Citrus Sinensis ID: 026342

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240
Protein Sequence
MAPQIDSARRRMTAVANHLVPVISSDSNSGFIGLNNASMNDSYHRIHGEVPSHDVVWRIACDESGTEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVSTVQQCLWWGLKKHVKCGF
Secondary Structure (PSIPRED)
ccccHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccEEcccccccccccEEEEEEccccEEEEEEccccccccccHHHHHHHHHHHHHHcccccccEEEEEcccccccccccccHHHcccccHHHHHHccccHHHHHHHHHcccccEEEEEccEEccHHHHHHHHHHHHHHccccccccccccEEccccccHHHHHHHHHcHHHHHHHHcHHccccccc
Secondary Structure Prediction (SSPRO)
ccccccHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccEEEcccccccccccEEEEEEEccccEEEEEEccHHHHHcccHHHHHHHHHHHHHHHcccccEEEEEEccccEEEEccccHHHHcccccccHHHHHHHcHHHHHHHHHHccccEEEEEccEEEcHHHHHHHHccEEEEEcccEEEcHHHHHccccccccccHHHHHHcccHHHHHHHHHHHccccc
Coil and Loop (DISEMBL)
MAPQIDSARRRMTAVANHLvpvissdsnsgfiglnnasmndsyhrihgevpshdvvwriacdesgtefTDIIYEKAVGEGIAkitinrpdrrnafrpHTVKELIRAFndarddssvGVIILTgkgteafcsggdqalrtrdgyadyenfgrlnvLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTiaadnaifgqtgpkvgsfdagygsSIMSRLVSTVQQCLWWGlkkhvkcgf
Flexible Loop (DISEMBL)
MAPQIDSARRRMTAVANHLVpvissdsnsgFIGLNNASMNDSYHRIHGEVPSHDVVWRIACDESGTEFTDIIYEKAVGEGIakitinrpdrrnafRPHTVKELIrafndarddssVGVIILtgkgteafcsggdQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVSTVQQCLWWGLKKHVKCGF
Low Complexity Region (SEG)
MAPQIDSARRRMTAVANHLVPVISSDSNSGFIGLNNASMNDSYHRIHGEVPSHDVVWRIACDESGTEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVSTVQQCLWWGLKKHVKCGF
Disordered region (IsUnstruct)
**************VANHLVPVIS****SGFIGLNNASMNDSYHRIHGEVPSHDVVWRIACDESGTEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVSTVQQCLWWGLKKHVKC**
Disordered Region (DISOPRED)
**********RMTAVANHL**********************************DVVWRIACDESGTEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVSTVQQCLWWGLKKHVKCGF
Disordered Region (DISEMBL)
**********RMTAVANHLVPVISSDSNSGFIGLNNASMNDSYHRIHGEVPSHDVVWRIACDESGTEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVSTVQQCLWWGLKKHVKCGF
Disordered Region (DISPRO)
***********************************************GEVPSHDVVWRIACDESGTEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVSTVQQCLWWGLKKHVKC*F
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAPQIDSARRRMTAVANHLVPVISSDSNSGFIGLNNASMNDSYHRIHGEVPSHDVVWRIACDESGTEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVSTVQQCLWWGLKKHVKCGF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	240	2.2.26 [Sep-21-2011]
Q8GYN9	337	1,4-Dihydroxy-2-naphthoyl	yes	no	0.962	0.685	0.714	2e-93
Q9CLV5	285	1,4-Dihydroxy-2-naphthoyl	yes	no	0.754	0.635	0.614	2e-57
P0ABU0	285	1,4-Dihydroxy-2-naphthoyl	N/A	no	0.75	0.631	0.602	4e-55
P0ABU1	285	1,4-Dihydroxy-2-naphthoyl	yes	no	0.75	0.631	0.602	4e-55
Q7CQ56	285	1,4-Dihydroxy-2-naphthoyl	yes	no	0.75	0.631	0.596	5e-55
P44960	285	1,4-Dihydroxy-2-naphthoyl	yes	no	0.683	0.575	0.644	5e-55
P23966	271	1,4-Dihydroxy-2-naphthoyl	yes	no	0.679	0.601	0.642	3e-54
Q5HQC3	272	1,4-Dihydroxy-2-naphthoyl	yes	no	0.7	0.617	0.629	2e-53
Q4L549	272	1,4-Dihydroxy-2-naphthoyl	yes	no	0.7	0.617	0.629	3e-53
Q49WG8	272	1,4-Dihydroxy-2-naphthoyl	yes	no	0.7	0.617	0.617	4e-53

>sp|Q8GYN9|MENB_ARATH 1,4-Dihydroxy-2-naphthoyl-CoA synthase, peroxisomal OS=Arabidopsis thaliana GN=MENB PE=1 SV=2

 Score =  342 bits (877), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 168/235 (71%), Positives = 196/235 (83%), Gaps = 4/235 (1%)

Query: 4   QIDSARRRMTAVANHLVPVISSDSNSGFIGLNNAS-MNDSYHRIHGEVPSHDVVWR---I 59
           ++ SA RR++ V NHL+P+  S + +  + L +AS M+D +H++HGEVP+H+VVW+    
Sbjct: 6   ELGSASRRLSVVTNHLIPIGFSPARADSVELCSASSMDDRFHKVHGEVPTHEVVWKKTDF 65

Query: 60  ACDESGTEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVI 119
             +    EF DIIYEKA+ EGIAKITINRP+RRNAFRP TVKEL+RAFNDARDDSSVGVI
Sbjct: 66  FGEGDNKEFVDIIYEKALDEGIAKITINRPERRNAFRPQTVKELMRAFNDARDDSSVGVI 125

Query: 120 ILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGG 179
           ILTGKGT+AFCSGGDQALRT+DGYAD  + GRLNVLDLQVQIRRLPKPVIAMVAGYAVGG
Sbjct: 126 ILTGKGTKAFCSGGDQALRTQDGYADPNDVGRLNVLDLQVQIRRLPKPVIAMVAGYAVGG 185

Query: 180 GHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVSTVQQCLWWGLKK 234
           GH+LHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLV   +    W + +
Sbjct: 186 GHILHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFMTR 240

Involved in the biosynthesis of phylloquinone (vitamin K1). Converts o-succinylbenzoyl-CoA (OSB-CoA) to 1,4-dihydroxy-2-naphthoyl-CoA (DHNA-CoA).
Arabidopsis thaliana (taxid: 3702)
EC: 4EC: .EC: 1EC: .EC: 3EC: .EC: 3EC: 6

>sp|Q9CLV5|MENB_PASMU 1,4-Dihydroxy-2-naphthoyl-CoA synthase OS=Pasteurella multocida (strain Pm70) GN=menB PE=3 SV=1

 Score =  222 bits (566), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 113/184 (61%), Positives = 137/184 (74%), Gaps = 3/184 (1%)

Query: 51  PSHDVVWR-IACDESGTEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFND 109
           P  DV++  I   +    +TDI+Y K++ +GIAKITINRP+ RNAFRP TVKE+I+AF D
Sbjct: 4   PKDDVLYAPIEWQDHSEGYTDILYHKSL-DGIAKITINRPEVRNAFRPQTVKEMIQAFAD 62

Query: 110 ARDDSSVGVIILTGKGTEAFCSGGDQALR-TRDGYADYENFGRLNVLDLQVQIRRLPKPV 168
           AR D  +GVI+LTG+G +AFCSGGDQ +R    GY D      LNVLD Q  IR  PKPV
Sbjct: 63  ARFDEQIGVIVLTGQGEKAFCSGGDQKVRGDYGGYQDESGVHHLNVLDFQRDIRTCPKPV 122

Query: 169 IAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVSTVQQCL 228
           +AMVAGYA+GGGHVLHM+CDLTIAADNAIFGQTGPKVGSFD G+G+S M+R+V   +   
Sbjct: 123 VAMVAGYAIGGGHVLHMICDLTIAADNAIFGQTGPKVGSFDGGWGASYMARIVGQKKARE 182

Query: 229 WWGL 232
            W L
Sbjct: 183 IWFL 186

Converts o-succinylbenzoyl-CoA (OSB-CoA) to 1,4-dihydroxy-2-naphthoyl-CoA (DHNA-CoA).

Pasteurella multocida (strain Pm70) (taxid: 272843)

EC: 4

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 3

EC: 6

>sp|P0ABU0|MENB_ECOLI 1,4-Dihydroxy-2-naphthoyl-CoA synthase OS=Escherichia coli (strain K12) GN=menB PE=1 SV=1

 Score =  214 bits (546), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 115/191 (60%), Positives = 135/191 (70%), Gaps = 11/191 (5%)

Query: 46  IHGEVPSHDVVWRIACDESGTEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIR 105
           ++  V  HD      C E    F DI YEK+  +GIAKITINRP  RNAFRP TVKE+I+
Sbjct: 9   LYAPVEWHD------CSEG---FEDIRYEKST-DGIAKITINRPQVRNAFRPLTVKEMIQ 58

Query: 106 AFNDARDDSSVGVIILTGKGTEAFCSGGDQALR-TRDGYADYENFGRLNVLDLQVQIRRL 164
           A  DAR D ++GVIILTG G +AFCSGGDQ +R    GY D      LNVLD Q QIR  
Sbjct: 59  ALADARYDDNIGVIILTGAGDKAFCSGGDQKVRGDYGGYKDDSGVHHLNVLDFQRQIRTC 118

Query: 165 PKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVSTV 224
           PKPV+AMVAGY++GGGHVLHM+CDLTIAADNAIFGQTGPKVGSFD G+G+S M+R+V   
Sbjct: 119 PKPVVAMVAGYSIGGGHVLHMMCDLTIAADNAIFGQTGPKVGSFDGGWGASYMARIVGQK 178

Query: 225 QQCLWWGLKKH 235
           +    W L + 
Sbjct: 179 KAREIWFLCRQ 189

Converts o-succinylbenzoyl-CoA (OSB-CoA) to 1,4-dihydroxy-2-naphthoyl-CoA (DHNA-CoA).

Escherichia coli (strain K12) (taxid: 83333)

EC: 4

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 3

EC: 6

>sp|P0ABU1|MENB_ECOL6 1,4-Dihydroxy-2-naphthoyl-CoA synthase OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=menB PE=3 SV=1

 Score =  214 bits (546), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 115/191 (60%), Positives = 135/191 (70%), Gaps = 11/191 (5%)

Query: 46  IHGEVPSHDVVWRIACDESGTEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIR 105
           ++  V  HD      C E    F DI YEK+  +GIAKITINRP  RNAFRP TVKE+I+
Sbjct: 9   LYAPVEWHD------CSEG---FEDIRYEKST-DGIAKITINRPQVRNAFRPLTVKEMIQ 58

Query: 106 AFNDARDDSSVGVIILTGKGTEAFCSGGDQALR-TRDGYADYENFGRLNVLDLQVQIRRL 164
           A  DAR D ++GVIILTG G +AFCSGGDQ +R    GY D      LNVLD Q QIR  
Sbjct: 59  ALADARYDDNIGVIILTGAGDKAFCSGGDQKVRGDYGGYKDDSGVHHLNVLDFQRQIRTC 118

Query: 165 PKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVSTV 224
           PKPV+AMVAGY++GGGHVLHM+CDLTIAADNAIFGQTGPKVGSFD G+G+S M+R+V   
Sbjct: 119 PKPVVAMVAGYSIGGGHVLHMMCDLTIAADNAIFGQTGPKVGSFDGGWGASYMARIVGQK 178

Query: 225 QQCLWWGLKKH 235
           +    W L + 
Sbjct: 179 KAREIWFLCRQ 189

Converts o-succinylbenzoyl-CoA (OSB-CoA) to 1,4-dihydroxy-2-naphthoyl-CoA (DHNA-CoA).

Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) (taxid: 199310)

EC: 4

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 3

EC: 6

>sp|Q7CQ56|MENB_SALTY 1,4-Dihydroxy-2-naphthoyl-CoA synthase OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=menB PE=1 SV=1

 Score =  214 bits (544), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 114/191 (59%), Positives = 137/191 (71%), Gaps = 11/191 (5%)

Query: 46  IHGEVPSHDVVWRIACDESGTEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIR 105
           ++  V  HD      C E    +TDI YEK+  +GIAKITINRP  RNAFRP TVKE+I+
Sbjct: 9   LYAPVEWHD------CSEG---YTDIRYEKST-DGIAKITINRPQVRNAFRPLTVKEMIQ 58

Query: 106 AFNDARDDSSVGVIILTGKGTEAFCSGGDQALR-TRDGYADYENFGRLNVLDLQVQIRRL 164
           A  DAR D +VGVIILTG+G +AFC+GGDQ +R    GY D      LNVLD Q QIR  
Sbjct: 59  ALADARYDDNVGVIILTGEGDKAFCAGGDQKVRGDYGGYQDDSGVHHLNVLDFQRQIRTC 118

Query: 165 PKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVSTV 224
           PKPV+AMVAGY++GGGHVLHM+CDLTIAA+NAIFGQTGPKVGSFD G+G+S M+R+V   
Sbjct: 119 PKPVVAMVAGYSIGGGHVLHMMCDLTIAAENAIFGQTGPKVGSFDGGWGASYMARIVGQK 178

Query: 225 QQCLWWGLKKH 235
           +    W L + 
Sbjct: 179 KAREIWFLCRQ 189

Converts o-succinylbenzoyl-CoA (OSB-CoA) to 1,4-dihydroxy-2-naphthoyl-CoA (DHNA-CoA).

Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) (taxid: 99287)

EC: 4

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 3

EC: 6

>sp|P44960|MENB_HAEIN 1,4-Dihydroxy-2-naphthoyl-CoA synthase OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=menB PE=3 SV=1

 Score =  214 bits (544), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 107/166 (64%), Positives = 129/166 (77%), Gaps = 2/166 (1%)

Query: 68  FTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTE 127
           ++DI Y K+  +GIAKITINRP+ RNAFRP TVKE++ AF+DAR D ++GVI+LTG+G +
Sbjct: 22  YSDIRYHKST-DGIAKITINRPEVRNAFRPQTVKEMMTAFSDARFDENIGVIVLTGEGEK 80

Query: 128 AFCSGGDQALR-TRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMV 186
           AFCSGGDQ +R    GY D      LNVLD Q  IR  PKPV+AMVAGYA+GGGHVLHM+
Sbjct: 81  AFCSGGDQKVRGDYGGYKDDSGVHHLNVLDFQRDIRSCPKPVVAMVAGYAIGGGHVLHML 140

Query: 187 CDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVSTVQQCLWWGL 232
           CDLTIAA+NAIFGQTGPKVGSFD G+G+S M+RLV   +    W L
Sbjct: 141 CDLTIAAENAIFGQTGPKVGSFDGGWGASYMARLVGQKKAREIWFL 186

Converts o-succinylbenzoyl-CoA (OSB-CoA) to 1,4-dihydroxy-2-naphthoyl-CoA (DHNA-CoA).

Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) (taxid: 71421)

EC: 4

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 3

EC: 6

>sp|P23966|MENB_BACSU 1,4-Dihydroxy-2-naphthoyl-CoA synthase OS=Bacillus subtilis (strain 168) GN=menB PE=1 SV=2

 Score =  211 bits (538), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 106/165 (64%), Positives = 125/165 (75%), Gaps = 2/165 (1%)

Query: 68  FTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTE 127
           + +I+YE     GIAKITINRP+  NAF P TV E+I AF DARDD +VGVI+L G G +
Sbjct: 10  YDEILYETY--NGIAKITINRPEVHNAFTPKTVAEMIDAFADARDDQNVGVIVLAGAGDK 67

Query: 128 AFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVC 187
           AFCSGGDQ +R   GY   +   RLNVLDLQ  IR +PKPV+AMV+GYA+GGGHVLH+VC
Sbjct: 68  AFCSGGDQKVRGHGGYVGDDQIPRLNVLDLQRLIRVIPKPVVAMVSGYAIGGGHVLHIVC 127

Query: 188 DLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVSTVQQCLWWGL 232
           DLTIAADNAIFGQTGPKVGSFDAGYGS  ++R+V   +    W L
Sbjct: 128 DLTIAADNAIFGQTGPKVGSFDAGYGSGYLARIVGHKKAREIWYL 172

Converts o-succinylbenzoyl-CoA (OSB-CoA) to 1,4-dihydroxy-2-naphthoyl-CoA (DHNA-CoA).

Bacillus subtilis (strain 168) (taxid: 224308)

EC: 4

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 3

EC: 6

>sp|Q5HQC3|MENB_STAEQ 1,4-Dihydroxy-2-naphthoyl-CoA synthase OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=menB PE=3 SV=1

 Score =  208 bits (530), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 107/170 (62%), Positives = 129/170 (75%), Gaps = 2/170 (1%)

Query: 63  ESGTEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILT 122
           E+  E+ +I YE    EGIAK+TINRP+ RNAF P TV E+I AF+ ARDD +V VI+LT
Sbjct: 6   ETLREYDEIKYE--FFEGIAKVTINRPEVRNAFTPKTVAEMIDAFSRARDDQNVSVIVLT 63

Query: 123 GKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHV 182
           G+G +AFCSGGDQ  R   GY   ++  RLNVLDLQ  IR +PKPVIAMV GYA+GGG+V
Sbjct: 64  GEGDKAFCSGGDQKKRGHGGYVGEDDIPRLNVLDLQRLIRVIPKPVIAMVRGYAIGGGNV 123

Query: 183 LHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVSTVQQCLWWGL 232
           L++VCDLTIAADNAIFGQTGPKVGSFDAGYGS  ++R+V   +    W L
Sbjct: 124 LNVVCDLTIAADNAIFGQTGPKVGSFDAGYGSGYLARIVGHKKAREIWYL 173

Converts o-succinylbenzoyl-CoA (OSB-CoA) to 1,4-dihydroxy-2-naphthoyl-CoA (DHNA-CoA).

Staphylococcus epidermidis (strain ATCC 35984 / RP62A) (taxid: 176279)

EC: 4

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 3

EC: 6

>sp|Q4L549|MENB_STAHJ 1,4-Dihydroxy-2-naphthoyl-CoA synthase OS=Staphylococcus haemolyticus (strain JCSC1435) GN=menB PE=3 SV=1

 Score =  208 bits (529), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 107/170 (62%), Positives = 128/170 (75%), Gaps = 2/170 (1%)

Query: 63  ESGTEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILT 122
           E+  E+ +I YE    EGIAK+TINRP+ RNAF P TV E+I AF+ ARDD ++ VIILT
Sbjct: 6   ETLREYDEIKYE--FYEGIAKVTINRPEVRNAFTPKTVAEMIDAFSRARDDQNISVIILT 63

Query: 123 GKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHV 182
           G+G +AFCSGGDQ  R   GY   +   RLNVLDLQ  IR +PKPVIAMV GYA+GGG+V
Sbjct: 64  GEGDKAFCSGGDQKKRGHGGYVGEDQIPRLNVLDLQRLIRVIPKPVIAMVRGYAIGGGNV 123

Query: 183 LHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVSTVQQCLWWGL 232
           L++VCDLTIAADNAIFGQTGPKVGSFDAGYGS  ++R+V   +    W L
Sbjct: 124 LNVVCDLTIAADNAIFGQTGPKVGSFDAGYGSGYLARIVGHKKAREIWYL 173

Converts o-succinylbenzoyl-CoA (OSB-CoA) to 1,4-dihydroxy-2-naphthoyl-CoA (DHNA-CoA).

Staphylococcus haemolyticus (strain JCSC1435) (taxid: 279808)

EC: 4

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 3

EC: 6

>sp|Q49WG8|MENB_STAS1 1,4-Dihydroxy-2-naphthoyl-CoA synthase OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=menB PE=3 SV=1

 Score =  207 bits (528), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 105/170 (61%), Positives = 130/170 (76%), Gaps = 2/170 (1%)

Query: 63  ESGTEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILT 122
           E+  E+ +I YE  + +GIAK+TINRP+ RNAF P+TV+E+I AF  ARDD  + VIILT
Sbjct: 6   ETIREYKEIKYE--LYDGIAKVTINRPEVRNAFTPNTVQEMIDAFTRARDDQRISVIILT 63

Query: 123 GKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHV 182
           G+G +AFCSGGDQ +R   GY   +   RLNVLDLQ  IR +PKPV+AMV GYA+GGG+V
Sbjct: 64  GEGDKAFCSGGDQKVRGHGGYVGDDQIPRLNVLDLQRLIRVIPKPVVAMVRGYAIGGGNV 123

Query: 183 LHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVSTVQQCLWWGL 232
           L++VCDLTIAADNAIFGQTGPKVGSFDAGYGS  ++R+V   +    W L
Sbjct: 124 LNVVCDLTIAADNAIFGQTGPKVGSFDAGYGSGYLARIVGHKKAREIWYL 173

Converts o-succinylbenzoyl-CoA (OSB-CoA) to 1,4-dihydroxy-2-naphthoyl-CoA (DHNA-CoA).

Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) (taxid: 342451)

EC: 4

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 3

EC: 6

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	240
225425573	336	PREDICTED: 1,4-Dihydroxy-2-naphthoyl-CoA	0.933	0.666	0.776	5e-99
147771137	336	hypothetical protein VITISV_034257 [Viti	0.933	0.666	0.776	8e-99
255568782	335	Naphthoate synthase, putative [Ricinus c	0.962	0.689	0.753	3e-97
307135970	333	naphthoate synthase [Cucumis melo subsp.	0.933	0.672	0.773	5e-97
449517563	333	PREDICTED: 1,4-Dihydroxy-2-naphthoyl-CoA	0.933	0.672	0.764	4e-96
449434935	333	PREDICTED: 1,4-Dihydroxy-2-naphthoyl-CoA	0.933	0.672	0.76	5e-95
359806589	339	uncharacterized protein LOC100807101 [Gl	0.962	0.681	0.722	3e-93
297837457	337	hypothetical protein ARALYDRAFT_475277 [	0.962	0.685	0.714	8e-92
30696431	337	naphthoate synthase [Arabidopsis thalian	0.962	0.685	0.714	9e-92
259490362	336	uncharacterized protein LOC100304279 [Ze	0.958	0.684	0.715	9e-92

>gi|225425573|ref|XP_002267500.1| PREDICTED: 1,4-Dihydroxy-2-naphthoyl-CoA synthase, peroxisomal [Vitis vinifera] gi|297739062|emb|CBI28551.3| unnamed protein product [Vitis vinifera]

 Score =  366 bits (939), Expect = 5e-99,   Method: Compositional matrix adjust.
 Identities = 174/224 (77%), Positives = 194/224 (86%)

Query: 7   SARRRMTAVANHLVPVISSDSNSGFIGLNNASMNDSYHRIHGEVPSHDVVWRIACDESGT 66
           +ARRR+ +VA+HL P+ S+  N   +G +  S  DSY R+HGEVP+HDV W  ACDESG 
Sbjct: 12  NARRRLASVAHHLTPLHSTTPNCSSLGFHTTSAPDSYRRVHGEVPTHDVTWNPACDESGK 71

Query: 67  EFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGT 126
            FTDIIYEKAVGE IAKITINRP+RRNAFRP+TVKELIRAFNDARDDSSVGVII TGKGT
Sbjct: 72  AFTDIIYEKAVGEAIAKITINRPERRNAFRPNTVKELIRAFNDARDDSSVGVIIFTGKGT 131

Query: 127 EAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMV 186
           +AFCSGGDQA R RDGYAD+++FGRLNVLDLQ+QIRRLPKPVIAMVAGYAVGGGHVLHMV
Sbjct: 132 KAFCSGGDQAFRGRDGYADHDDFGRLNVLDLQMQIRRLPKPVIAMVAGYAVGGGHVLHMV 191

Query: 187 CDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVSTVQQCLWW 230
           CDLTIAADNAIFGQTGPKVGSFD+GYGSSIMSRL+   +    W
Sbjct: 192 CDLTIAADNAIFGQTGPKVGSFDSGYGSSIMSRLIGPKKAREMW 235

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147771137|emb|CAN74179.1| hypothetical protein VITISV_034257 [Vitis vinifera]

 Score =  365 bits (937), Expect = 8e-99,   Method: Compositional matrix adjust.
 Identities = 174/224 (77%), Positives = 193/224 (86%)

Query: 7   SARRRMTAVANHLVPVISSDSNSGFIGLNNASMNDSYHRIHGEVPSHDVVWRIACDESGT 66
           +ARRR+ +VA+HL P+ S+  N   +G +  S  DSY R+HGEVP+HDV W  ACDESG 
Sbjct: 12  NARRRLASVAHHLTPLHSTTPNCSSLGFHTTSAPDSYRRVHGEVPTHDVTWNPACDESGK 71

Query: 67  EFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGT 126
            FTDIIYEKAVGE IAKITINRP+RRNAFRP+TVKELIRAFNDARDDSSVGVII TGKGT
Sbjct: 72  AFTDIIYEKAVGEAIAKITINRPERRNAFRPNTVKELIRAFNDARDDSSVGVIIFTGKGT 131

Query: 127 EAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMV 186
           +AFCSGGDQA R RDGYAD+++FGRLNVLDLQ+QIRRLPKPVIAMVAGYAVGGGHVLHMV
Sbjct: 132 KAFCSGGDQAFRGRDGYADHDDFGRLNVLDLQMQIRRLPKPVIAMVAGYAVGGGHVLHMV 191

Query: 187 CDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVSTVQQCLWW 230
           CDLTIAADNAIFGQTGPKVGSFD GYGSSIMSRL+   +    W
Sbjct: 192 CDLTIAADNAIFGQTGPKVGSFDXGYGSSIMSRLIGPKKAREMW 235

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255568782|ref|XP_002525362.1| Naphthoate synthase, putative [Ricinus communis] gi|223535325|gb|EEF37000.1| Naphthoate synthase, putative [Ricinus communis]

 Score =  360 bits (924), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 174/231 (75%), Positives = 196/231 (84%)

Query: 4   QIDSARRRMTAVANHLVPVISSDSNSGFIGLNNASMNDSYHRIHGEVPSHDVVWRIACDE 63
           ++D+  RR+  V NHL PV  S ++S     N +S+++SYHRIHGEV +  V+W+ ACDE
Sbjct: 8   EMDALGRRLATVTNHLNPVAPSSNHSPIDLSNTSSIDNSYHRIHGEVSNEQVIWKNACDE 67

Query: 64  SGTEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTG 123
            G EFTDIIYEKAVGEGIAKITINRP+RRNAFRP TVKE+IRAFNDARDDSS+GVIILTG
Sbjct: 68  YGKEFTDIIYEKAVGEGIAKITINRPERRNAFRPQTVKEMIRAFNDARDDSSIGVIILTG 127

Query: 124 KGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVL 183
           KGT+AFCSGGDQ+LRT DGYAD  + GRLNVLDLQVQIRRLPKP+IAMVAGYAVGGGHVL
Sbjct: 128 KGTKAFCSGGDQSLRTADGYADPNDMGRLNVLDLQVQIRRLPKPIIAMVAGYAVGGGHVL 187

Query: 184 HMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVSTVQQCLWWGLKK 234
           HMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLV   +    W L +
Sbjct: 188 HMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLAR 238

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|307135970|gb|ADN33829.1| naphthoate synthase [Cucumis melo subsp. melo]

 Score =  359 bits (922), Expect = 5e-97,   Method: Compositional matrix adjust.
 Identities = 174/225 (77%), Positives = 195/225 (86%), Gaps = 1/225 (0%)

Query: 10  RRMTAVANHLVPVISSDSNSGFIGLNNASMNDSYHRIHGEVPSHDVVWRIACDESGTEFT 69
           RR+ ++++HLVP I    N   I L++AS++DSYHR HG V +H VVW IA DE G EFT
Sbjct: 13  RRVASISSHLVP-IPQTPNPDSIHLSSASIDDSYHRKHGTVSTHPVVWSIAGDEFGKEFT 71

Query: 70  DIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAF 129
           DIIYEKAVGE IAKITINRP+RRNAFRP T+KELIRAFNDARDDSS+GVIILTGKGTEAF
Sbjct: 72  DIIYEKAVGEAIAKITINRPERRNAFRPQTIKELIRAFNDARDDSSIGVIILTGKGTEAF 131

Query: 130 CSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDL 189
           CSGGDQALR +DGY+DY++FGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGH+LHMVCDL
Sbjct: 132 CSGGDQALRKKDGYSDYDDFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHILHMVCDL 191

Query: 190 TIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVSTVQQCLWWGLKK 234
           TIAA+NAIFGQTGPKVGSFDAGYGSSIMSRLV   +    W L +
Sbjct: 192 TIAAENAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLTR 236

Source: Cucumis melo subsp. melo

Species: Cucumis melo

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449517563|ref|XP_004165815.1| PREDICTED: 1,4-Dihydroxy-2-naphthoyl-CoA synthase, peroxisomal-like [Cucumis sativus]

 Score =  356 bits (914), Expect = 4e-96,   Method: Compositional matrix adjust.
 Identities = 172/225 (76%), Positives = 194/225 (86%), Gaps = 1/225 (0%)

Query: 10  RRMTAVANHLVPVISSDSNSGFIGLNNASMNDSYHRIHGEVPSHDVVWRIACDESGTEFT 69
           RR+ ++++HLVP I    N   I L++AS++DSYHR HG V +H VVW  A DE G EFT
Sbjct: 13  RRVASISSHLVP-IPQTPNPDSIHLSSASIDDSYHRKHGTVSTHPVVWSKAGDEFGKEFT 71

Query: 70  DIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAF 129
           DIIYEKAVGE IAKITINRP+RRNAFRP T+KELIRAFNDARDDSS+GV+ILTGKGTEAF
Sbjct: 72  DIIYEKAVGEAIAKITINRPERRNAFRPQTIKELIRAFNDARDDSSIGVVILTGKGTEAF 131

Query: 130 CSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDL 189
           CSGGDQALR +DGY+DY++FGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGH+LHMVCDL
Sbjct: 132 CSGGDQALRKKDGYSDYDDFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHILHMVCDL 191

Query: 190 TIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVSTVQQCLWWGLKK 234
           TIAA+NAIFGQTGPKVGSFDAGYGSSIMSRLV   +    W L +
Sbjct: 192 TIAAENAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLTR 236

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449434935|ref|XP_004135251.1| PREDICTED: 1,4-Dihydroxy-2-naphthoyl-CoA synthase, peroxisomal-like [Cucumis sativus]

 Score =  353 bits (905), Expect = 5e-95,   Method: Compositional matrix adjust.
 Identities = 171/225 (76%), Positives = 193/225 (85%), Gaps = 1/225 (0%)

Query: 10  RRMTAVANHLVPVISSDSNSGFIGLNNASMNDSYHRIHGEVPSHDVVWRIACDESGTEFT 69
           RR+ ++++HLVP I    N   I L++AS++DSYHR HG V +  VVW  A DE G EFT
Sbjct: 13  RRVASISSHLVP-IPQTPNPDSIHLSSASIDDSYHRKHGTVSTLPVVWSKAGDEFGKEFT 71

Query: 70  DIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAF 129
           DIIYEKAVGE IAKITINRP+RRNAFRP T+KELIRAFNDARDDSS+GV+ILTGKGTEAF
Sbjct: 72  DIIYEKAVGEAIAKITINRPERRNAFRPQTIKELIRAFNDARDDSSIGVVILTGKGTEAF 131

Query: 130 CSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDL 189
           CSGGDQALR +DGY+DY++FGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGH+LHMVCDL
Sbjct: 132 CSGGDQALRKKDGYSDYDDFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHILHMVCDL 191

Query: 190 TIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVSTVQQCLWWGLKK 234
           TIAA+NAIFGQTGPKVGSFDAGYGSSIMSRLV   +    W L +
Sbjct: 192 TIAAENAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLTR 236

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359806589|ref|NP_001241269.1| uncharacterized protein LOC100807101 [Glycine max] gi|255639630|gb|ACU20109.1| unknown [Glycine max]

 Score =  347 bits (889), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 169/234 (72%), Positives = 191/234 (81%), Gaps = 3/234 (1%)

Query: 4   QIDSARRRMTAVANHLVPVISSDSNSGFIGLNNASMNDSYHRIHGEVPSHDVVWRIAC-- 61
            +++A RR+ +V NHL P    ++         +  N+S+ R+HGEVPSHDVVWRI    
Sbjct: 9   HLETATRRLASVTNHLTPSSYHNAPGELAPCLTSGGNNSFRRVHGEVPSHDVVWRIVASD 68

Query: 62  -DESGTEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVII 120
            D SG +FTDI+YEKAVGEGIAKI+INRP+RRNAFRPHTVKEL+RAF DARDDSS+GV+I
Sbjct: 69  HDNSGKDFTDIVYEKAVGEGIAKISINRPERRNAFRPHTVKELMRAFTDARDDSSIGVVI 128

Query: 121 LTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGG 180
           LTGKGTEAFCSGGDQALRT DGY+D  +F  LNVLDLQVQIRRLPKPVIAMVAGYAVGGG
Sbjct: 129 LTGKGTEAFCSGGDQALRTNDGYSDNGSFSSLNVLDLQVQIRRLPKPVIAMVAGYAVGGG 188

Query: 181 HVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVSTVQQCLWWGLKK 234
           HVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLV   +    W L +
Sbjct: 189 HVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLTR 242

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297837457|ref|XP_002886610.1| hypothetical protein ARALYDRAFT_475277 [Arabidopsis lyrata subsp. lyrata] gi|297332451|gb|EFH62869.1| hypothetical protein ARALYDRAFT_475277 [Arabidopsis lyrata subsp. lyrata]

 Score =  342 bits (877), Expect = 8e-92,   Method: Compositional matrix adjust.
 Identities = 168/235 (71%), Positives = 196/235 (83%), Gaps = 4/235 (1%)

Query: 4   QIDSARRRMTAVANHLVPVISSDSNSGFIGLNNAS-MNDSYHRIHGEVPSHDVVWRIA-- 60
           ++ SA RR++ V NHL+P+  + +    + L +AS M+DS+H++HGEVP+H+ VW+ A  
Sbjct: 6   ELGSASRRISVVTNHLIPIGFNPTRVDSVELCSASSMDDSFHKVHGEVPTHEAVWKKAEF 65

Query: 61  -CDESGTEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVI 119
             D    EF DIIYEKA+ EGIAKITINRP+RRNAFRP TVKEL+RAFNDARDDSSVGVI
Sbjct: 66  FVDGDNKEFVDIIYEKALDEGIAKITINRPERRNAFRPLTVKELMRAFNDARDDSSVGVI 125

Query: 120 ILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGG 179
           ILTGKGT+AFCSGGDQALRT+DGYAD  + GRLNVLDLQ+QIRRLPKPVIAMVAGYAVGG
Sbjct: 126 ILTGKGTKAFCSGGDQALRTQDGYADPNDVGRLNVLDLQIQIRRLPKPVIAMVAGYAVGG 185

Query: 180 GHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVSTVQQCLWWGLKK 234
           GH+LHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLV   +    W + +
Sbjct: 186 GHILHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFMTR 240

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30696431|ref|NP_176255.2| naphthoate synthase [Arabidopsis thaliana] gi|327488386|sp|Q8GYN9.2|MENB_ARATH RecName: Full=1,4-Dihydroxy-2-naphthoyl-CoA synthase, peroxisomal; Short=DHNS; AltName: Full=Enoyl-CoA hydratase/isomerase D; Short=ECHID; AltName: Full=Naphthoate synthase gi|192571726|gb|ACF04808.1| At1g60550 [Arabidopsis thaliana] gi|332195575|gb|AEE33696.1| naphthoate synthase [Arabidopsis thaliana]

 Score =  342 bits (877), Expect = 9e-92,   Method: Compositional matrix adjust.
 Identities = 168/235 (71%), Positives = 196/235 (83%), Gaps = 4/235 (1%)

Query: 4   QIDSARRRMTAVANHLVPVISSDSNSGFIGLNNAS-MNDSYHRIHGEVPSHDVVWR---I 59
           ++ SA RR++ V NHL+P+  S + +  + L +AS M+D +H++HGEVP+H+VVW+    
Sbjct: 6   ELGSASRRLSVVTNHLIPIGFSPARADSVELCSASSMDDRFHKVHGEVPTHEVVWKKTDF 65

Query: 60  ACDESGTEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVI 119
             +    EF DIIYEKA+ EGIAKITINRP+RRNAFRP TVKEL+RAFNDARDDSSVGVI
Sbjct: 66  FGEGDNKEFVDIIYEKALDEGIAKITINRPERRNAFRPQTVKELMRAFNDARDDSSVGVI 125

Query: 120 ILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGG 179
           ILTGKGT+AFCSGGDQALRT+DGYAD  + GRLNVLDLQVQIRRLPKPVIAMVAGYAVGG
Sbjct: 126 ILTGKGTKAFCSGGDQALRTQDGYADPNDVGRLNVLDLQVQIRRLPKPVIAMVAGYAVGG 185

Query: 180 GHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVSTVQQCLWWGLKK 234
           GH+LHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLV   +    W + +
Sbjct: 186 GHILHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFMTR 240

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|259490362|ref|NP_001159194.1| uncharacterized protein LOC100304279 [Zea mays] gi|223942561|gb|ACN25364.1| unknown [Zea mays] gi|414881113|tpg|DAA58244.1| TPA: hypothetical protein ZEAMMB73_624046 [Zea mays]

 Score =  342 bits (876), Expect = 9e-92,   Method: Compositional matrix adjust.
 Identities = 171/239 (71%), Positives = 189/239 (79%), Gaps = 9/239 (3%)

Query: 5   IDSARRRMTAVANHLVPVISSDSNSGFIGLNNASM---------NDSYHRIHGEVPSHDV 55
           +D+A RR+  VA HLVP       +G     + +           DSY R+HG+VPS   
Sbjct: 1   MDAAERRLARVAAHLVPSFPVPHATGPPLAPSPAAASSSSSSPAGDSYRRVHGDVPSEPP 60

Query: 56  VWRIACDESGTEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSS 115
            WR A DESG EF DIIYEKAVGEGIAKITINRPDRRNAFRP TVKEL+RAFNDARDDSS
Sbjct: 61  EWRTATDESGKEFVDIIYEKAVGEGIAKITINRPDRRNAFRPLTVKELMRAFNDARDDSS 120

Query: 116 VGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGY 175
           +GVIILTGKGT+AFCSGGDQALR  DGY D+++FGRLNVLDLQVQIRRLPKPVIAMVAGY
Sbjct: 121 IGVIILTGKGTKAFCSGGDQALRDSDGYVDFDSFGRLNVLDLQVQIRRLPKPVIAMVAGY 180

Query: 176 AVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVSTVQQCLWWGLKK 234
           AVGGGHVLHMVCD+TIAA+NAIFGQTGPKVGSFDAGYGSSIMSRLV   +    W L +
Sbjct: 181 AVGGGHVLHMVCDITIAAENAIFGQTGPKVGSFDAGYGSSIMSRLVGPKRAREMWFLSR 239

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	240
TAIR|locus:2036626	337	ECHID "enoyl-CoA hydratase/iso	0.945	0.673	0.727	8.9e-86
UNIPROTKB|P0ABU0	285	menB [Escherichia coli K-12 (t	0.675	0.568	0.666	1.7e-52
TIGR_CMR|BA_5109	272	BA_5109 "naphthoate synthase"	0.633	0.558	0.688	7.2e-52
UNIPROTKB|P23966	271	menB "1,4-Dihydroxy-2-naphthoy	0.633	0.560	0.675	1.9e-51
UNIPROTKB|Q9KQM5	296	VC_1973 "Naphthoate synthase"	0.675	0.547	0.648	2.5e-49
TIGR_CMR|VC_1973	296	VC_1973 "naphthoate synthase"	0.675	0.547	0.648	2.5e-49
TIGR_CMR|SO_4739	300	SO_4739 "naphthoate synthase"	0.658	0.526	0.508	1.5e-37
UNIPROTKB|A0QRD3	309	menB "1,4-Dihydroxy-2-naphthoy	0.570	0.443	0.493	2e-31
UNIPROTKB|O06414	314	menB "1,4-Dihydroxy-2-naphthoy	0.562	0.429	0.457	3.4e-29
TIGR_CMR|GSU_1377	260	GSU_1377 "3-hydroxybutyryl-CoA	0.6	0.553	0.406	5.7e-20

TAIR|locus:2036626 ECHID "enoyl-CoA hydratase/isomerase D" [Arabidopsis thaliana (taxid:3702)]

 Score = 858 (307.1 bits), Expect = 8.9e-86, P = 8.9e-86
 Identities = 168/231 (72%), Positives = 194/231 (83%)

Query:     4 QIDSARRRMTAVANHLVPVISSDSNSGFIGLNNAS-MNDSYHRIHGEVPSHDVVWR---I 59
             ++ SA RR++ V NHL+P+  S + +  + L +AS M+D +H++HGEVP+H+VVW+    
Sbjct:     6 ELGSASRRLSVVTNHLIPIGFSPARADSVELCSASSMDDRFHKVHGEVPTHEVVWKKTDF 65

Query:    60 ACDESGTEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVI 119
               +    EF DIIYEKA+ EGIAKITINRP+RRNAFRP TVKEL+RAFNDARDDSSVGVI
Sbjct:    66 FGEGDNKEFVDIIYEKALDEGIAKITINRPERRNAFRPQTVKELMRAFNDARDDSSVGVI 125

Query:   120 ILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGG 179
             ILTGKGT+AFCSGGDQALRT+DGYAD  + GRLNVLDLQVQIRRLPKPVIAMVAGYAVGG
Sbjct:   126 ILTGKGTKAFCSGGDQALRTQDGYADPNDVGRLNVLDLQVQIRRLPKPVIAMVAGYAVGG 185

Query:   180 GHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVSTVQQCLWW 230
             GH+LHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLV   +    W
Sbjct:   186 GHILHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMW 236

GO:0003824 "catalytic activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0008152 "metabolic process" evidence=IEA

GO:0008935 "1,4-dihydroxy-2-naphthoyl-CoA synthase activity" evidence=IEA;ISS

GO:0009234 "menaquinone biosynthetic process" evidence=IEA

GO:0042371 "vitamin K biosynthetic process" evidence=ISS

GO:0005777 "peroxisome" evidence=IDA

UNIPROTKB|P0ABU0 menB [Escherichia coli K-12 (taxid:83333)]

 Score = 544 (196.6 bits), Expect = 1.7e-52, P = 1.7e-52
 Identities = 112/168 (66%), Positives = 128/168 (76%)

Query:    55 VVWRIACDESGTEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDS 114
             V W   C E    F DI YEK+  +GIAKITINRP  RNAFRP TVKE+I+A  DAR D 
Sbjct:    13 VEWH-DCSEG---FEDIRYEKST-DGIAKITINRPQVRNAFRPLTVKEMIQALADARYDD 67

Query:   115 SVGVIILTGKGTEAFCSGGDQALR-TRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVA 173
             ++GVIILTG G +AFCSGGDQ +R    GY D      LNVLD Q QIR  PKPV+AMVA
Sbjct:    68 NIGVIILTGAGDKAFCSGGDQKVRGDYGGYKDDSGVHHLNVLDFQRQIRTCPKPVVAMVA 127

Query:   174 GYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLV 221
             GY++GGGHVLHM+CDLTIAADNAIFGQTGPKVGSFD G+G+S M+R+V
Sbjct:   128 GYSIGGGHVLHMMCDLTIAADNAIFGQTGPKVGSFDGGWGASYMARIV 175

GO:0008935 "1,4-dihydroxy-2-naphthoyl-CoA synthase activity" evidence=IEA;IDA

GO:0071890 "bicarbonate binding" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0009234 "menaquinone biosynthetic process" evidence=IEA;IMP

TIGR_CMR|BA_5109 BA_5109 "naphthoate synthase" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 538 (194.4 bits), Expect = 7.2e-52, P = 7.2e-52
 Identities = 106/154 (68%), Positives = 123/154 (79%)

Query:    68 FTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTE 127
             + DIIY  +   GIAKI+INRP+  NAFRP TV ELI AF  ARDD++VGVIILTG+G  
Sbjct:    11 YEDIIY--STYNGIAKISINRPEVHNAFRPKTVMELIDAFAHARDDANVGVIILTGEGGR 68

Query:   128 AFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVC 187
             AFCSGGDQ +R   GY   +   RLNVLDLQ  IR +PKPVIAMVAGYA+GGGHVLH+VC
Sbjct:    69 AFCSGGDQKVRGHGGYVGDDQIPRLNVLDLQRLIRAIPKPVIAMVAGYAIGGGHVLHIVC 128

Query:   188 DLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLV 221
             DLTIAADNA+FGQTGPKVGSFD GYG+  ++R+V
Sbjct:   129 DLTIAADNAVFGQTGPKVGSFDGGYGAGYLARMV 162

GO:0008935 "1,4-dihydroxy-2-naphthoyl-CoA synthase activity" evidence=ISS

GO:0009234 "menaquinone biosynthetic process" evidence=ISS

UNIPROTKB|P23966 menB "1,4-Dihydroxy-2-naphthoyl-CoA synthase" [Bacillus subtilis subsp. subtilis str. 168 (taxid:224308)]

 Score = 534 (193.0 bits), Expect = 1.9e-51, P = 1.9e-51
 Identities = 104/154 (67%), Positives = 122/154 (79%)

Query:    68 FTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTE 127
             + +I+YE     GIAKITINRP+  NAF P TV E+I AF DARDD +VGVI+L G G +
Sbjct:    10 YDEILYETY--NGIAKITINRPEVHNAFTPKTVAEMIDAFADARDDQNVGVIVLAGAGDK 67

Query:   128 AFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVC 187
             AFCSGGDQ +R   GY   +   RLNVLDLQ  IR +PKPV+AMV+GYA+GGGHVLH+VC
Sbjct:    68 AFCSGGDQKVRGHGGYVGDDQIPRLNVLDLQRLIRVIPKPVVAMVSGYAIGGGHVLHIVC 127

Query:   188 DLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLV 221
             DLTIAADNAIFGQTGPKVGSFDAGYGS  ++R+V
Sbjct:   128 DLTIAADNAIFGQTGPKVGSFDAGYGSGYLARIV 161

GO:0008935 "1,4-dihydroxy-2-naphthoyl-CoA synthase activity" evidence=IDA

GO:0009234 "menaquinone biosynthetic process" evidence=IGC

GO:0071890 "bicarbonate binding" evidence=IDA

UNIPROTKB|Q9KQM5 VC_1973 "Naphthoate synthase" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)]

 Score = 514 (186.0 bits), Expect = 2.5e-49, P = 2.5e-49
 Identities = 109/168 (64%), Positives = 126/168 (75%)

Query:    55 VVWRIACDESGTEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDS 114
             V+W+   D +G ++ DI Y K+  +GIAKITI RP  RNAFRP TVKE+I A  DAR D 
Sbjct:    24 VIWQ---DCTG-DYQDIHYHKS-DDGIAKITIARPQVRNAFRPLTVKEMIHALADARYDD 78

Query:   115 SVGVIILTGKGTEAFCSGGDQALR-TRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVA 173
              VGVIILTG G +AFCSGGDQ +R    GY D      LNVLD Q QIR  PKPVIA VA
Sbjct:    79 KVGVIILTGLGEDAFCSGGDQKIRGDYGGYRDDSGTHHLNVLDFQRQIRTCPKPVIAAVA 138

Query:   174 GYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLV 221
             G+AVGGGHVLHM+CDLTIAA+NA FGQTGPKVGSFD G+G+S M+R+V
Sbjct:   139 GWAVGGGHVLHMMCDLTIAAENAQFGQTGPKVGSFDGGWGASYMARIV 186

GO:0008935 "1,4-dihydroxy-2-naphthoyl-CoA synthase activity" evidence=ISS

GO:0009234 "menaquinone biosynthetic process" evidence=ISS

TIGR_CMR|VC_1973 VC_1973 "naphthoate synthase" [Vibrio cholerae O1 biovar El Tor (taxid:686)]

 Score = 514 (186.0 bits), Expect = 2.5e-49, P = 2.5e-49
 Identities = 109/168 (64%), Positives = 126/168 (75%)

Query:    55 VVWRIACDESGTEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDS 114
             V+W+   D +G ++ DI Y K+  +GIAKITI RP  RNAFRP TVKE+I A  DAR D 
Sbjct:    24 VIWQ---DCTG-DYQDIHYHKS-DDGIAKITIARPQVRNAFRPLTVKEMIHALADARYDD 78

Query:   115 SVGVIILTGKGTEAFCSGGDQALR-TRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVA 173
              VGVIILTG G +AFCSGGDQ +R    GY D      LNVLD Q QIR  PKPVIA VA
Sbjct:    79 KVGVIILTGLGEDAFCSGGDQKIRGDYGGYRDDSGTHHLNVLDFQRQIRTCPKPVIAAVA 138

Query:   174 GYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLV 221
             G+AVGGGHVLHM+CDLTIAA+NA FGQTGPKVGSFD G+G+S M+R+V
Sbjct:   139 GWAVGGGHVLHMMCDLTIAAENAQFGQTGPKVGSFDGGWGASYMARIV 186

GO:0008935 "1,4-dihydroxy-2-naphthoyl-CoA synthase activity" evidence=ISS

GO:0009234 "menaquinone biosynthetic process" evidence=ISS

TIGR_CMR|SO_4739 SO_4739 "naphthoate synthase" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 403 (146.9 bits), Expect = 1.5e-37, P = 1.5e-37
 Identities = 88/173 (50%), Positives = 114/173 (65%)

Query:    64 SGTEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTG 123
             +G  FTDI Y +A   G  +I INRPD  NAFRP TV EL  A + AR  S VG  +LTG
Sbjct:    18 NGFNFTDITYHRAKAHGTVRIAINRPDCLNAFRPKTVDELYIALDHARQWSDVGCALLTG 77

Query:   124 KGTEA-----FCSGGDQALRTRDGY---------ADYENFGRLNVLDLQVQIRRLPKPVI 169
              G  A     F SGGDQ +R +DGY         AD    GRL++L++Q  IR +PK VI
Sbjct:    78 NGPSAKGQYSFSSGGDQRIRGKDGYKYEGAEEGKADLARMGRLHILEVQRLIRFMPKVVI 137

Query:   170 AMVAGYAVGGGHVLHMVCDLTIAA-DNAIFGQTGPKVGSFDAGYGSSIMSRLV 221
             A+V G+AVGGGH LH+VCDLT+A+ ++AIF QT P V SFD+GYGS+ +++++
Sbjct:   138 AVVPGWAVGGGHSLHVVCDLTLASKEHAIFKQTDPDVASFDSGYGSAYLAKMI 190

GO:0008935 "1,4-dihydroxy-2-naphthoyl-CoA synthase activity" evidence=ISS

GO:0009234 "menaquinone biosynthetic process" evidence=ISS

UNIPROTKB|A0QRD3 menB "1,4-Dihydroxy-2-naphthoyl-CoA synthase" [Mycobacterium smegmatis str. MC2 155 (taxid:246196)]

 Score = 345 (126.5 bits), Expect = 2.0e-31, P = 2.0e-31
 Identities = 76/154 (49%), Positives = 99/154 (64%)

Query:    83 KITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTE------AFCSGGDQA 136
             ++  +RP+ RNAFRPHTV EL R  + AR  S VGVI+LTG G        AFCSGGDQ 
Sbjct:    44 RVAFDRPEVRNAFRPHTVDELYRVLDHARMSSDVGVILLTGNGPSPKDGGWAFCSGGDQR 103

Query:   137 LRTRDGY----------ADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMV 186
             +R R GY           D    GRL++L++Q  IR +PK VI +V G+A GGGH LH+ 
Sbjct:   104 IRGRTGYQYASGETAETVDPARAGRLHILEVQRLIRFMPKVVICLVNGWAAGGGHSLHVT 163

Query:   187 CDLTIAA-DNAIFGQTGPKVGSFDAGYGSSIMSR 219
             CDLT+A+ ++A F QT   VGSFD G+GS+ ++R
Sbjct:   164 CDLTLASREHARFKQTDADVGSFDGGFGSAYLAR 197

GO:0008935 "1,4-dihydroxy-2-naphthoyl-CoA synthase activity" evidence=ISS;IDA

GO:0009234 "menaquinone biosynthetic process" evidence=ISS

UNIPROTKB|O06414 menB "1,4-Dihydroxy-2-naphthoyl-CoA synthase" [Mycobacterium tuberculosis (taxid:1773)]

 Score = 324 (119.1 bits), Expect = 3.4e-29, P = 3.4e-29
 Identities = 70/153 (45%), Positives = 92/153 (60%)

Query:    57 WRIACDESGTEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSV 116
             WR+   +   + TDI Y + V +   ++  NRP+ RNAFRPHTV EL R  + AR    V
Sbjct:    25 WRLV--DGFDDLTDITYHRHVDDATVRVAFNRPEVRNAFRPHTVDELYRVLDHARMSPDV 82

Query:   117 GVIILTGKGTE------AFCSGGDQALRTRDGY----------ADYENFGRLNVLDLQVQ 160
             GV++LTG G        AFCSGGDQ +R R GY           D    GRL++L++Q  
Sbjct:    83 GVVLLTGNGPSPKDGGWAFCSGGDQRIRGRSGYQYASGDTADTVDVARAGRLHILEVQRL 142

Query:   161 IRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAA 193
             IR +PK VI +V G+A GGGH LH+VCDLT+A+
Sbjct:   143 IRFMPKVVICLVNGWAAGGGHSLHVVCDLTLAS 175

GO:0005886 "plasma membrane" evidence=IDA

GO:0008935 "1,4-dihydroxy-2-naphthoyl-CoA synthase activity" evidence=IDA

GO:0009234 "menaquinone biosynthetic process" evidence=IDA

GO:0034214 "protein hexamerization" evidence=IDA

GO:0051260 "protein homooligomerization" evidence=IPI

TIGR_CMR|GSU_1377 GSU_1377 "3-hydroxybutyryl-CoA dehydratase" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 237 (88.5 bits), Expect = 5.7e-20, P = 5.7e-20
 Identities = 59/145 (40%), Positives = 73/145 (50%)

Query:    77 VGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQA 136
             + EGIA ITINRP   NA  P T+ EL  A         V   ILTG GT+AF +G D A
Sbjct:    10 ISEGIAAITINRPSAMNAMTPATLDELAEAVRRVNGAPEVRAAILTGAGTKAFMAGADIA 69

Query:   137 LRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNA 196
                    A   +  R     +   I R PK  IA V GYA+GGG  L M CD+ +A++NA
Sbjct:    70 AMRDMTPAQARDLAR-QAHQIYADIERSPKTFIAAVNGYALGGGCELAMACDIRLASENA 128

Query:   197 IFGQTGPKVGSFDAGYGSSIMSRLV 221
              FGQ    +G      G+  + RLV
Sbjct:   129 KFGQPEINIGIIPGFGGTQRLPRLV 153

GO:0004300 "enoyl-CoA hydratase activity" evidence=ISS

GO:0006113 "fermentation" evidence=ISS

GO:0019605 "butyrate metabolic process" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q49WG8	MENB_STAS1	4, ., 1, ., 3, ., 3, 6	0.6176	0.7	0.6176	yes	no
Q8NXA0	MENB_STAAW	4, ., 1, ., 3, ., 3, 6	0.6352	0.7	0.6153	yes	no
Q6GAG7	MENB_STAAS	4, ., 1, ., 3, ., 3, 6	0.6352	0.7	0.6153	yes	no
Q9CLV5	MENB_PASMU	4, ., 1, ., 3, ., 3, 6	0.6141	0.7541	0.6350	yes	no
Q7A6A9	MENB_STAAN	4, ., 1, ., 3, ., 3, 6	0.6352	0.7	0.6153	yes	no
Q8CPQ4	MENB_STAES	4, ., 1, ., 3, ., 3, 6	0.6385	0.6833	0.6029	yes	no
Q6GI37	MENB_STAAR	4, ., 1, ., 3, ., 3, 6	0.6352	0.7	0.6153	yes	no
Q7CQ56	MENB_SALTY	4, ., 1, ., 3, ., 3, 6	0.5968	0.75	0.6315	yes	no
Q5HH38	MENB_STAAC	4, ., 1, ., 3, ., 3, 6	0.6352	0.7	0.6153	yes	no
Q99V48	MENB_STAAM	4, ., 1, ., 3, ., 3, 6	0.6352	0.7	0.6153	yes	no
Q8GYN9	MENB_ARATH	4, ., 1, ., 3, ., 3, 6	0.7148	0.9625	0.6854	yes	no
Q5HQC3	MENB_STAEQ	4, ., 1, ., 3, ., 3, 6	0.6294	0.7	0.6176	yes	no
P0ABU1	MENB_ECOL6	4, ., 1, ., 3, ., 3, 6	0.6020	0.75	0.6315	yes	no
P23966	MENB_BACSU	4, ., 1, ., 3, ., 3, 6	0.6424	0.6791	0.6014	yes	no
Q4L549	MENB_STAHJ	4, ., 1, ., 3, ., 3, 6	0.6294	0.7	0.6176	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	4.1.3	LOW CONFIDENCE prediction!
3rd Layer	4.1.3.36	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00002734001	SubName- Full=Chromosome chr1 scaffold_135, whole genome shotgun sequence; (336 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00021178001	SubName- Full=Chromosome chr1 scaffold_22, whole genome shotgun sequence; (587 aa)	•		•	•			•		0.974
	GSVIVG00029748001	SubName- Full=Chromosome chr10 scaffold_50, whole genome shotgun sequence; (565 aa)	•			•		•	•		0.928
	GSVIVG00000099001	SubName- Full=Chromosome chr17 scaffold_101, whole genome shotgun sequence; (511 aa)	•		•				•		0.916
	GSVIVG00027718001	SubName- Full=Chromosome chr19 scaffold_4, whole genome shotgun sequence; (296 aa)	•	•				•	•		0.856
	GSVIVG00019735001	SubName- Full=Chromosome chr5 scaffold_2, whole genome shotgun sequence; (172 aa)	•		•				•		0.774
	GSVIVG00024504001	SubName- Full=Chromosome chr6 scaffold_3, whole genome shotgun sequence; (403 aa)	•					•	•		0.715
	GSVIVG00036606001	SubName- Full=Chromosome chr3 scaffold_8, whole genome shotgun sequence; (570 aa)	•					•	•		0.629
	GSVIVG00002760001	SubName- Full=Chromosome chr1 scaffold_135, whole genome shotgun sequence; (258 aa)							•		0.595
	GSVIVG00034896001	SubName- Full=Chromosome chr4 scaffold_73, whole genome shotgun sequence; (407 aa)	•						•		0.551
	GSVIVG00029076001	SubName- Full=Chromosome chr12 scaffold_47, whole genome shotgun sequence; (381 aa)	•						•		0.547

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	240
PLN02921	327	PLN02921, PLN02921, naphthoate synthase	1e-143
PRK07396	273	PRK07396, PRK07396, dihydroxynaphthoic acid synthe	1e-108
COG0447	282	COG0447, MenB, Dihydroxynaphthoic acid synthase [C	6e-92
TIGR01929	259	TIGR01929, menB, naphthoate synthase (dihydroxynap	9e-84
PRK08321	302	PRK08321, PRK08321, naphthoate synthase; Validated	2e-67
TIGR03210	256	TIGR03210, badI, 2-ketocyclohexanecarboxyl-CoA hyd	7e-53
pfam00378	245	pfam00378, ECH, Enoyl-CoA hydratase/isomerase fami	6e-45
cd06558	195	cd06558, crotonase-like, Crotonase/Enoyl-Coenzyme	1e-44
COG1024	257	COG1024, CaiD, Enoyl-CoA hydratase/carnithine race	1e-36
PRK06688	259	PRK06688, PRK06688, enoyl-CoA hydratase; Provision	5e-30
PRK05995	262	PRK05995, PRK05995, enoyl-CoA hydratase; Provision	1e-28
PRK05809	260	PRK05809, PRK05809, 3-hydroxybutyryl-CoA dehydrata	2e-27
PRK06494	259	PRK06494, PRK06494, enoyl-CoA hydratase; Provision	2e-26
PRK05862	257	PRK05862, PRK05862, enoyl-CoA hydratase; Provision	3e-24
TIGR03200	360	TIGR03200, dearomat_oah, 6-oxocyclohex-1-ene-1-car	1e-23
PRK06127	269	PRK06127, PRK06127, enoyl-CoA hydratase; Provision	3e-23
PRK07511	260	PRK07511, PRK07511, enoyl-CoA hydratase; Provision	3e-23
PRK08290	288	PRK08290, PRK08290, enoyl-CoA hydratase; Provision	9e-23
PRK06144	262	PRK06144, PRK06144, enoyl-CoA hydratase; Provision	2e-22
PRK08260	296	PRK08260, PRK08260, enoyl-CoA hydratase; Provision	3e-22
PRK07657	260	PRK07657, PRK07657, enoyl-CoA hydratase; Provision	6e-22
PRK07468	262	PRK07468, PRK07468, enoyl-CoA hydratase; Provision	7e-22
PRK08140	262	PRK08140, PRK08140, enoyl-CoA hydratase; Provision	9e-22
PRK08138	261	PRK08138, PRK08138, enoyl-CoA hydratase; Provision	1e-21
PRK09120	275	PRK09120, PRK09120, p-hydroxycinnamoyl CoA hydrata	1e-21
PRK06210	272	PRK06210, PRK06210, enoyl-CoA hydratase; Provision	1e-21
PRK08139	266	PRK08139, PRK08139, enoyl-CoA hydratase; Validated	3e-21
PRK09245	266	PRK09245, PRK09245, enoyl-CoA hydratase; Provision	4e-21
PLN02888	265	PLN02888, PLN02888, enoyl-CoA hydratase	1e-20
PRK08272	302	PRK08272, PRK08272, enoyl-CoA hydratase; Provision	6e-20
PRK03580	261	PRK03580, PRK03580, carnitinyl-CoA dehydratase; Pr	2e-19
PRK07110	249	PRK07110, PRK07110, polyketide biosynthesis enoyl-	5e-19
PRK05870	249	PRK05870, PRK05870, enoyl-CoA hydratase; Provision	6e-19
PRK08259	254	PRK08259, PRK08259, enoyl-CoA hydratase; Provision	1e-18
PRK06190	258	PRK06190, PRK06190, enoyl-CoA hydratase; Provision	1e-18
TIGR02280	256	TIGR02280, PaaB1, phenylacetate degradation probab	2e-18
PRK09674	255	PRK09674, PRK09674, enoyl-CoA hydratase-isomerase;	3e-18
PRK05864	276	PRK05864, PRK05864, enoyl-CoA hydratase; Provision	7e-18
PRK07854	243	PRK07854, PRK07854, enoyl-CoA hydratase; Provision	1e-17
PRK08252	254	PRK08252, PRK08252, enoyl-CoA hydratase; Provision	3e-17
PRK08258	277	PRK08258, PRK08258, enoyl-CoA hydratase; Provision	3e-17
PRK05980	260	PRK05980, PRK05980, enoyl-CoA hydratase; Provision	6e-17
PRK06142	272	PRK06142, PRK06142, enoyl-CoA hydratase; Provision	1e-16
PRK05674	265	PRK05674, PRK05674, gamma-carboxygeranoyl-CoA hydr	5e-16
PRK07827	260	PRK07827, PRK07827, enoyl-CoA hydratase; Provision	1e-15
PRK07799	263	PRK07799, PRK07799, enoyl-CoA hydratase; Provision	2e-15
PRK07658	257	PRK07658, PRK07658, enoyl-CoA hydratase; Provision	2e-15
PRK07260	255	PRK07260, PRK07260, enoyl-CoA hydratase; Provision	7e-15
PRK11423	261	PRK11423, PRK11423, methylmalonyl-CoA decarboxylas	2e-14
PRK06495	257	PRK06495, PRK06495, enoyl-CoA hydratase; Provision	4e-14
PRK07509	262	PRK07509, PRK07509, enoyl-CoA hydratase; Provision	5e-14
PLN02600	251	PLN02600, PLN02600, enoyl-CoA hydratase	7e-14
PRK12478	298	PRK12478, PRK12478, enoyl-CoA hydratase; Provision	9e-14
PRK05981	266	PRK05981, PRK05981, enoyl-CoA hydratase; Provision	2e-13
PRK07327	268	PRK07327, PRK07327, enoyl-CoA hydratase; Provision	2e-13
PRK06143	256	PRK06143, PRK06143, enoyl-CoA hydratase; Provision	3e-12
PRK06563	255	PRK06563, PRK06563, enoyl-CoA hydratase; Provision	3e-12
PRK08150	255	PRK08150, PRK08150, enoyl-CoA hydratase; Provision	6e-12
PRK06023	251	PRK06023, PRK06023, enoyl-CoA hydratase; Provision	7e-12
PRK05869	222	PRK05869, PRK05869, enoyl-CoA hydratase; Validated	9e-12
PRK07659	260	PRK07659, PRK07659, enoyl-CoA hydratase; Provision	2e-11
PRK06072	248	PRK06072, PRK06072, enoyl-CoA hydratase; Provision	2e-11
PLN02664	275	PLN02664, PLN02664, enoyl-CoA hydratase/delta3,5-d	8e-11
PRK05617	342	PRK05617, PRK05617, 3-hydroxyisobutyryl-CoA hydrol	9e-11
PRK07938	249	PRK07938, PRK07938, enoyl-CoA hydratase; Provision	1e-10
PLN02988	381	PLN02988, PLN02988, 3-hydroxyisobutyryl-CoA hydrol	2e-10
PRK11154	708	PRK11154, fadJ, multifunctional fatty acid oxidati	9e-09
PLN02874	379	PLN02874, PLN02874, 3-hydroxyisobutyryl-CoA hydrol	3e-08
PRK07112	255	PRK07112, PRK07112, polyketide biosynthesis enoyl-	4e-08
TIGR02437	714	TIGR02437, FadB, fatty oxidation complex, alpha su	6e-08
PLN02157	401	PLN02157, PLN02157, 3-hydroxyisobutyryl-CoA hydrol	7e-08
PRK09076	258	PRK09076, PRK09076, enoyl-CoA hydratase; Provision	3e-07
PRK11730	715	PRK11730, fadB, multifunctional fatty acid oxidati	9e-07
PLN02851	407	PLN02851, PLN02851, 3-hydroxyisobutyryl-CoA hydrol	1e-06
TIGR02440	699	TIGR02440, FadJ, fatty oxidation complex, alpha su	6e-05

>gnl|CDD|178509 PLN02921, PLN02921, naphthoate synthase

 Score =  403 bits (1036), Expect = e-143
 Identities = 166/216 (76%), Positives = 184/216 (85%)

Query: 6   DSARRRMTAVANHLVPVISSDSNSGFIGLNNASMNDSYHRIHGEVPSHDVVWRIACDESG 65
           D+ARRR+  VANHLVP  +  S +     +  +  DSY R+HG+V S  VVWR   D SG
Sbjct: 2   DAARRRLARVANHLVPSANPASMAAARSSSATAPPDSYRRVHGDVSSEPVVWRKVPDGSG 61

Query: 66  TEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKG 125
            EFTDIIYEKAVGEGIAKITINRP+RRNAFRP TVKEL RAFNDARDDSSVGVIILTGKG
Sbjct: 62  KEFTDIIYEKAVGEGIAKITINRPERRNAFRPRTVKELQRAFNDARDDSSVGVIILTGKG 121

Query: 126 TEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHM 185
           T+AFCSGGDQA+R +DGY   ++ GRLNVLDLQ+QIRRLPKPVIAMVAGYAVGGGH+LHM
Sbjct: 122 TKAFCSGGDQAVRGKDGYVGPDDAGRLNVLDLQIQIRRLPKPVIAMVAGYAVGGGHILHM 181

Query: 186 VCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLV 221
           VCDLTIAADNA+FGQTGPKVGSFDAGYGSSIM+RLV
Sbjct: 182 VCDLTIAADNAVFGQTGPKVGSFDAGYGSSIMARLV 217

Length = 327

>gnl|CDD|180958 PRK07396, PRK07396, dihydroxynaphthoic acid synthetase; Validated

 Score =  313 bits (804), Expect = e-108
 Identities = 112/155 (72%), Positives = 129/155 (83%), Gaps = 2/155 (1%)

Query: 67  EFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGT 126
           E+ DI+Y+ A  +GIAKITINRP+ RNAFRP TVKE+I AF DARDD ++GVIILTG G 
Sbjct: 11  EYEDILYKSA--DGIAKITINRPEVRNAFRPKTVKEMIDAFADARDDDNIGVIILTGAGD 68

Query: 127 EAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMV 186
           +AFCSGGDQ +R   GY D +   RLNVLDLQ  IR  PKPVIAMVAGYA+GGGHVLH+V
Sbjct: 69  KAFCSGGDQKVRGYGGYVDDDGVPRLNVLDLQRLIRTCPKPVIAMVAGYAIGGGHVLHLV 128

Query: 187 CDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLV 221
           CDLTIAADNAIFGQTGPKVGSFD GYG+S ++R+V
Sbjct: 129 CDLTIAADNAIFGQTGPKVGSFDGGYGASYLARIV 163

Length = 273

>gnl|CDD|223524 COG0447, MenB, Dihydroxynaphthoic acid synthase [Coenzyme metabolism]

 Score =  271 bits (695), Expect = 6e-92
 Identities = 113/158 (71%), Positives = 128/158 (81%), Gaps = 4/158 (2%)

Query: 67  EFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGK-- 124
            + DI YEK+V  GIAKITINRP+ RNAFRP TV E+I AF DARDD +VGVI+LTG   
Sbjct: 16  GYEDITYEKSVD-GIAKITINRPEVRNAFRPKTVDEMIDAFADARDDPNVGVILLTGNGD 74

Query: 125 GTEAFCSGGDQALRTRD-GYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVL 183
           G +AFCSGGDQ +R    GY D +   RLNVLDLQ  IR +PKPVIAMVAGYA+GGGHVL
Sbjct: 75  GDKAFCSGGDQKVRGDSGGYVDDDGIPRLNVLDLQRLIRTMPKPVIAMVAGYAIGGGHVL 134

Query: 184 HMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLV 221
           H+VCDLTIAADNAIFGQTGPKVGSFD GYGSS ++R+V
Sbjct: 135 HVVCDLTIAADNAIFGQTGPKVGSFDGGYGSSYLARIV 172

Length = 282

>gnl|CDD|200143 TIGR01929, menB, naphthoate synthase (dihydroxynaphthoic acid synthetase)

 Score =  250 bits (639), Expect = 9e-84
 Identities = 109/154 (70%), Positives = 125/154 (81%), Gaps = 1/154 (0%)

Query: 68  FTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTE 127
           F DI YEK+  +GIAKITINRP  RNAFRP TVKE+I+A +DAR+D  +GV+ILTG G +
Sbjct: 1   FEDIRYEKST-DGIAKITINRPQVRNAFRPLTVKEIIQALDDAREDPDIGVVILTGAGDK 59

Query: 128 AFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVC 187
           AFCSGGDQ +R   GY D     RLNVLD+Q QIR  PKPVIAMV GYA+GGGHVLHM+C
Sbjct: 60  AFCSGGDQKVRGDYGYIDDSGVHRLNVLDVQRQIRTCPKPVIAMVNGYAIGGGHVLHMMC 119

Query: 188 DLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLV 221
           DLTIAA+NA FGQTGPKVGSFD GYGSS M+R+V
Sbjct: 120 DLTIAAENARFGQTGPKVGSFDGGYGSSYMARIV 153

This model represents an enzyme, naphthoate synthase (dihydroxynaphthoic acid synthetase), which is involved in the fifth step of the menaquinone biosynthesis pathway. Together with o-succinylbenzoate-CoA ligase (menE: TIGR01923), this enzyme takes 2-succinylbenzoate and converts it into 1,4-di-hydroxy-2-naphthoate. Included above the trusted cutoff are two enzymes from Arabadopsis thaliana and one from Staphylococcus aureus which are identified as putative enoyl-CoA hydratase/isomerases. These enzymes group with the naphthoate synthases when building a tree and when doing BLAST searches [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 259

>gnl|CDD|181386 PRK08321, PRK08321, naphthoate synthase; Validated

 Score =  209 bits (534), Expect = 2e-67
 Identities = 89/175 (50%), Positives = 113/175 (64%), Gaps = 17/175 (9%)

Query: 64  SGTEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTG 123
            G +FTDI Y +AV +G  +I  +RP+ RNAFRPHTV EL RA + AR    VG ++LTG
Sbjct: 18  PGFDFTDITYHRAVDQGTVRIAFDRPEVRNAFRPHTVDELYRALDHARMSPDVGCVLLTG 77

Query: 124 KGTE------AFCSGGDQALRTRDGY----------ADYENFGRLNVLDLQVQIRRLPKP 167
            G        AFCSGGDQ +R RDGY           D    GRL++L++Q  IR +PK 
Sbjct: 78  NGPSPKDGGWAFCSGGDQRIRGRDGYQYAEGDEADTVDPARAGRLHILEVQRLIRFMPKV 137

Query: 168 VIAMVAGYAVGGGHVLHMVCDLTIA-ADNAIFGQTGPKVGSFDAGYGSSIMSRLV 221
           VIA+V G+A GGGH LH+VCDLT+A  ++A F QT   VGSFD GYGS+ ++R V
Sbjct: 138 VIAVVPGWAAGGGHSLHVVCDLTLASREHARFKQTDADVGSFDGGYGSAYLARQV 192

Length = 302

>gnl|CDD|132254 TIGR03210, badI, 2-ketocyclohexanecarboxyl-CoA hydrolase

 Score =  171 bits (434), Expect = 7e-53
 Identities = 83/154 (53%), Positives = 105/154 (68%), Gaps = 4/154 (2%)

Query: 68  FTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTE 127
           + DI+YEK    GIA I INRP + NAFR  T  ELI A  DA  D  +GVI+L G G +
Sbjct: 1   YEDILYEKR--NGIAWIMINRPAKMNAFRGQTCDELIHALKDAGYDRQIGVIVLAGAGDK 58

Query: 128 AFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVC 187
           AFC+GGDQ+  T DG  D      L + +L   IR +PKPVIA V GYA+GGG+VL  +C
Sbjct: 59  AFCTGGDQS--THDGGYDGRGTIGLPMEELHSAIRDVPKPVIARVQGYAIGGGNVLVTIC 116

Query: 188 DLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLV 221
           DLTIA++ A FGQ GPKVGS D GYG+++++R+V
Sbjct: 117 DLTIASEKAQFGQVGPKVGSVDPGYGTALLARVV 150

Members of this protein family are 2-ketocyclohexanecarboxyl-CoA hydrolase, a ring-opening enzyme that acts in catabolism of molecules such as benzoyl-CoA and cyclohexane carboxylate. It converts -ketocyclohexanecarboxyl-CoA to pimelyl-CoA. It is not sensitive to oxygen. Length = 256

>gnl|CDD|201191 pfam00378, ECH, Enoyl-CoA hydratase/isomerase family

 Score =  150 bits (380), Expect = 6e-45
 Identities = 56/145 (38%), Positives = 75/145 (51%), Gaps = 2/145 (1%)

Query: 77  VGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQA 136
           +  G+A I ++RP+  NA     + ELI+A      D SV  I+LTG    AF +G D  
Sbjct: 4   LEAGVAVIKLDRPEAVNALSAELLTELIQALEKLEQDPSVKAIVLTGGP-GAFSAGADIK 62

Query: 137 LRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNA 196
               +  A    F  L   DL  ++  LPKPVIA V GYA+GGG  L + CD  IAADNA
Sbjct: 63  EMAAEPLAQQAQF-SLEAQDLWSRLEDLPKPVIAAVNGYALGGGLELALACDYRIAADNA 121

Query: 197 IFGQTGPKVGSFDAGYGSSIMSRLV 221
            FG    K+G      G+  + R++
Sbjct: 122 KFGLPEVKLGIIPGAGGTQRLPRII 146

This family contains a diverse set of enzymes including: Enoyl-CoA hydratase. Napthoate synthase. Carnitate racemase. 3-hydoxybutyryl-CoA dehydratase. Dodecanoyl-CoA delta-isomerase. Length = 245

>gnl|CDD|119339 cd06558, crotonase-like, Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily

 Score =  148 bits (375), Expect = 1e-44
 Identities = 59/152 (38%), Positives = 86/152 (56%), Gaps = 4/152 (2%)

Query: 71  IIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFC 130
           ++ E+    G+A IT+NRP++RNA     + EL  A ++A  D  V V++LTG G +AFC
Sbjct: 1   VLVER--DGGVATITLNRPEKRNALSLEMLDELAAALDEAEADPDVRVVVLTGAG-KAFC 57

Query: 131 SGGD-QALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDL 189
           +G D + L       +        + +L   + RLPKPVIA V G A+GGG  L + CD+
Sbjct: 58  AGADLKELAALSDAGEEARAFIRELQELLRALLRLPKPVIAAVNGAALGGGLELALACDI 117

Query: 190 TIAADNAIFGQTGPKVGSFDAGYGSSIMSRLV 221
            IAA++A FG    K+G    G G+  + RLV
Sbjct: 118 RIAAEDAKFGLPEVKLGLVPGGGGTQRLPRLV 149

This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase. Many of these play important roles in fatty acid metabolism. In addition to a conserved structural core and the formation of trimers (or dimers of trimers), a common feature in this superfamily is the stabilization of an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two conserved backbone NH groups in active sites that form an oxyanion hole. Length = 195

>gnl|CDD|223955 COG1024, CaiD, Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism]

 Score =  129 bits (326), Expect = 1e-36
 Identities = 62/182 (34%), Positives = 91/182 (50%), Gaps = 19/182 (10%)

Query: 66  TEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKG 125
           T +  I+ E    +GIA IT+NRP++ NA     + EL  A ++A  D  V V++LTG G
Sbjct: 2   TTYETILVE--REDGIAVITLNRPEKLNALNLEMLDELAEALDEAEADPDVRVVVLTGAG 59

Query: 126 TEAFCSGGD-QALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLH 184
             AF +G D + L + +     EN  +     L+  +  LPKPVIA V GYA+GGG  L 
Sbjct: 60  K-AFSAGADLKELLSPEDGNAAENLMQPGQDLLR-ALADLPKPVIAAVNGYALGGGLELA 117

Query: 185 MVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVS--------------TVQQCLWW 230
           + CD+ IAA++A FG     +G      G+  + RL+               +  + L  
Sbjct: 118 LACDIRIAAEDAKFGLPEVNLGLLPGDGGTQRLPRLLGRGRAKELLLTGEPISAAEALEL 177

Query: 231 GL 232
           GL
Sbjct: 178 GL 179

Length = 257

>gnl|CDD|235852 PRK06688, PRK06688, enoyl-CoA hydratase; Provisional

 Score =  112 bits (282), Expect = 5e-30
 Identities = 58/159 (36%), Positives = 81/159 (50%), Gaps = 17/159 (10%)

Query: 69  TDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEA 128
           TD++ E    +G+  ITINRPD++NA      + L  A   A  D +V V++LTG G  A
Sbjct: 5   TDLLVELE--DGVLTITINRPDKKNALTAAMYQALADALEAAATDPAVRVVVLTGAG-RA 61

Query: 129 FCSGGDQALRTRDGYADYENFGRLNVLDLQV-----QIRRLPKPVIAMVAGYAVGGGHVL 183
           F +GGD            +   +       V      I  LPKPV+A V G AVG G  L
Sbjct: 62  FSAGGDIK-------DFPKAPPKPPDELAPVNRFLRAIAALPKPVVAAVNGPAVGVGVSL 114

Query: 184 HMVCDLTIAADNAIFGQTGPKVGSF-DAGYGSSIMSRLV 221
            + CDL  A+++A F     K+G   DAG GS+++ RL+
Sbjct: 115 ALACDLVYASESAKFSLPFAKLGLCPDAG-GSALLPRLI 152

Length = 259

>gnl|CDD|235664 PRK05995, PRK05995, enoyl-CoA hydratase; Provisional

 Score =  108 bits (272), Expect = 1e-28
 Identities = 55/137 (40%), Positives = 74/137 (54%), Gaps = 3/137 (2%)

Query: 76  AVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGD- 134
                +A +T+NRPD RNAF    + EL  AF     D SV  ++L G G +AFC+G D 
Sbjct: 9   EQRGQVATVTLNRPDVRNAFNETVIAELTAAFRALDADDSVRAVVLAGAG-KAFCAGADL 67

Query: 135 QALRTRDGYADYENFGRLNVL-DLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAA 193
             ++   GY+D EN      L D+   I R PKPVIA V G A  GG  L   CD+ +AA
Sbjct: 68  NWMKKMAGYSDDENRADARRLADMLRAIYRCPKPVIARVHGDAYAGGMGLVAACDIAVAA 127

Query: 194 DNAIFGQTGPKVGSFDA 210
           D+A+F  +  ++G   A
Sbjct: 128 DHAVFCLSEVRLGLIPA 144

Length = 262

>gnl|CDD|180270 PRK05809, PRK05809, 3-hydroxybutyryl-CoA dehydratase; Validated

 Score =  105 bits (264), Expect = 2e-27
 Identities = 61/161 (37%), Positives = 89/161 (55%), Gaps = 11/161 (6%)

Query: 67  EFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGT 126
           E  ++I EK     IA +TINRP   NA    T+KEL    +D  +D +V  +ILTG G 
Sbjct: 2   ELKNVILEKE--GHIAVVTINRPKALNALNSETLKELDTVLDDIENDDNVYAVILTGAGE 59

Query: 127 EAFCSGGDQALRTRDGYADYENFGRLNVLDLQV--QIRRLPKPVIAMVAGYAVGGGHVLH 184
           +AF +G D +        +   FG   +L  +V  ++  L KPVIA + G+A+GGG  L 
Sbjct: 60  KAFVAGADISEMKDLNEEEGRKFG---LLGNKVFRKLENLDKPVIAAINGFALGGGCELS 116

Query: 185 MVCDLTIAADNAIFGQTGPKVG-SFDAGY-GSSIMSRLVST 223
           M CD+ IA++ A FGQ  P+VG     G+ G+  ++R+V  
Sbjct: 117 MACDIRIASEKAKFGQ--PEVGLGITPGFGGTQRLARIVGP 155

Length = 260

>gnl|CDD|180591 PRK06494, PRK06494, enoyl-CoA hydratase; Provisional

 Score =  102 bits (256), Expect = 2e-26
 Identities = 50/133 (37%), Positives = 65/133 (48%), Gaps = 14/133 (10%)

Query: 79  EGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGD---Q 135
             +  +T+NRP+  NA       EL   F+D   D    V I+TG G +AF +G D   Q
Sbjct: 12  GHVTIVTLNRPEVMNALHLDAHFELEEVFDDFAADPEQWVAIVTGAGDKAFSAGNDLKEQ 71

Query: 136 ALRTRDGYADYENFGRLNVLDLQVQIRR--LPKPVIAMVAGYAVGGGHVLHMVCDLTIAA 193
           A   + G      FG L          R  L KP+IA V G A+GGG  L + CDL +AA
Sbjct: 72  AAGGKRG-WPESGFGGLT--------SRFDLDKPIIAAVNGVAMGGGFELALACDLIVAA 122

Query: 194 DNAIFGQTGPKVG 206
           +NA F    P+VG
Sbjct: 123 ENATFALPEPRVG 135

Length = 259

>gnl|CDD|180295 PRK05862, PRK05862, enoyl-CoA hydratase; Provisional

 Score = 96.6 bits (241), Expect = 3e-24
 Identities = 57/145 (39%), Positives = 74/145 (51%), Gaps = 16/145 (11%)

Query: 84  ITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGD----QALRT 139
           IT+NRP   NA     + EL  A      D  +G I++TG   +AF +G D      L  
Sbjct: 17  ITLNRPKALNALNDALMDELGAALAAFDADEGIGAIVITGS-EKAFAAGADIKEMADLSF 75

Query: 140 RDGY-ADY-ENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAI 197
            D Y  DY  N+ +         + R+ KPVIA VAGYA+GGG  L M+CD+ IAAD A 
Sbjct: 76  MDVYKGDYITNWEK---------VARIRKPVIAAVAGYALGGGCELAMMCDIIIAADTAK 126

Query: 198 FGQTGPKVGSFDAGYGSSIMSRLVS 222
           FGQ   K+G      GS  ++R V 
Sbjct: 127 FGQPEIKLGVLPGMGGSQRLTRAVG 151

Length = 257

>gnl|CDD|132244 TIGR03200, dearomat_oah, 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase

 Score = 97.3 bits (242), Expect = 1e-23
 Identities = 56/160 (35%), Positives = 77/160 (48%), Gaps = 16/160 (10%)

Query: 62  DESGTEFTDIIYEK--------AVGEGI--AKITINRPDRRNAFRPHTVKELIRAFNDAR 111
           +   T    ++YEK         V  G+  A I ++ P + N++    VK +I AF  A 
Sbjct: 9   EHPETVCPGVLYEKRPAKRPDGNVVPGLYNAWIILDNPKQYNSYTTDMVKAIILAFRRAS 68

Query: 112 DDSSVGVIILTGKGTEAFCSGGDQALRTRDGYA----DYENFGRLNVLDLQVQIRRLPKP 167
            D  V  ++ T  G +AFC+GG+      + YA    +Y  + RL   D+   I    KP
Sbjct: 69  SDRDVVAVVFTAVGDKAFCTGGNTK-EYAEYYAGNPQEYRQYMRL-FNDMVSAILGCDKP 126

Query: 168 VIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGS 207
           VI  V G  +GGG  + M  D TIA D A FGQ GPK GS
Sbjct: 127 VICRVNGMRIGGGQEIGMAADFTIAQDLANFGQAGPKHGS 166

Members of this protein family are 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase, a ring-hydrolyzing enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA. Length = 360

>gnl|CDD|235705 PRK06127, PRK06127, enoyl-CoA hydratase; Provisional

 Score = 94.4 bits (235), Expect = 3e-23
 Identities = 54/159 (33%), Positives = 79/159 (49%), Gaps = 14/159 (8%)

Query: 71  IIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFC 130
           ++ EK    G+ +IT N P R NA      + L +A   A DD ++ V++LTG G +AF 
Sbjct: 13  LLAEKT--GGLGRITFNNPARHNAMSLDMWEALPQALAAAEDDDAIRVVVLTGAGEKAFV 70

Query: 131 SGGD----QALR-TRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHM 185
           SG D    +  R   +  A YE      V   Q  +    KP IA + GY +GGG  + +
Sbjct: 71  SGADISQFEESRSDAEAVAAYEQ----AVEAAQAALADYAKPTIACIRGYCIGGGMGIAL 126

Query: 186 VCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVSTV 224
            CD+ IAA+++ FG    ++G    GYG   +  LV  V
Sbjct: 127 ACDIRIAAEDSRFGIPAARLG---LGYGYDGVKNLVDLV 162

Length = 269

>gnl|CDD|181009 PRK07511, PRK07511, enoyl-CoA hydratase; Provisional

 Score = 93.9 bits (234), Expect = 3e-23
 Identities = 52/144 (36%), Positives = 70/144 (48%), Gaps = 9/144 (6%)

Query: 84  ITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGD----QALRT 139
           +T++ P  RNA  P      I A N A  D S+  ++LTG G   FC+GG+       R 
Sbjct: 16  LTLSNPGARNALHPDMYAAGIEALNTAERDPSIRAVVLTGAG-GFFCAGGNLNRLLENRA 74

Query: 140 RDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFG 199
           +       +   L+  D    IR  PKPVIA V G A G G  L + CDL +AA +A F 
Sbjct: 75  KPPSVQAASIDGLH--DWIRAIRAFPKPVIAAVEGAAAGAGFSLALACDLLVAARDAKFV 132

Query: 200 QTGPKVG-SFDAGYGSSIMSRLVS 222
               KVG + D G GS  ++R + 
Sbjct: 133 MAYVKVGLTPDGG-GSWFLARALP 155

Length = 260

>gnl|CDD|236220 PRK08290, PRK08290, enoyl-CoA hydratase; Provisional

 Score = 93.5 bits (233), Expect = 9e-23
 Identities = 55/154 (35%), Positives = 75/154 (48%), Gaps = 24/154 (15%)

Query: 66  TEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKG 125
            E+  + YE  V   IA+IT+NRP+ RNA     + EL  AF  A  D +V VI+L G G
Sbjct: 1   MEYEYVRYE--VAGRIARITLNRPEARNAQNRQMLYELDAAFRRAEADDAVRVIVLAGAG 58

Query: 126 TEAFCSGGD----QALRTRDGYAD------YENFGRLNV-----------LDLQVQIRRL 164
            + F +G D       R RD   D      ++   +  V           L +  + R L
Sbjct: 59  -KHFSAGHDLGSGTPGRDRDPGPDQHPTLWWDGATKPGVEQRYAREWEVYLGMCRRWRDL 117

Query: 165 PKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIF 198
           PKP IA V G  + GG +L  VCDL +A+D+A F
Sbjct: 118 PKPTIAQVQGACIAGGLMLAWVCDLIVASDDAFF 151

Length = 288

>gnl|CDD|180424 PRK06144, PRK06144, enoyl-CoA hydratase; Provisional

 Score = 92.0 bits (229), Expect = 2e-22
 Identities = 48/138 (34%), Positives = 65/138 (47%), Gaps = 10/138 (7%)

Query: 66  TEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKG 125
           T   +++ E  V  GIA+IT NRP  RNA      + L         D S+  ++L G G
Sbjct: 5   TSTDELLLE--VRGGIARITFNRPAARNAMTWAMYEGLAEICEAIAADPSIRAVVLRGAG 62

Query: 126 TEAFCSGGD----QALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGH 181
            +AF +G D    +A  T +    YE      VL     + +L  P IA +AG  VGGG 
Sbjct: 63  DKAFVAGTDIAQFRAFSTAEDAVAYERRID-RVLGA---LEQLRVPTIAAIAGACVGGGA 118

Query: 182 VLHMVCDLTIAADNAIFG 199
            +   CDL IA  +A FG
Sbjct: 119 AIAAACDLRIATPSARFG 136

Length = 262

>gnl|CDD|236206 PRK08260, PRK08260, enoyl-CoA hydratase; Provisional

 Score = 92.0 bits (229), Expect = 3e-22
 Identities = 53/154 (34%), Positives = 74/154 (48%), Gaps = 29/154 (18%)

Query: 67  EFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGT 126
            +  I Y+  V +GIA IT+NRPD+ NAF     +ELI AF+ A  D +V  +I+TG G 
Sbjct: 2   TYETIRYD--VADGIATITLNRPDKLNAFTVTMARELIEAFDAADADDAVRAVIVTGAG- 58

Query: 127 EAFCSGGD---------------QALRTRDGYADY------ENFGRLNVLDLQVQIRRLP 165
            AFC+G D                     +  AD       +  GR+      ++I    
Sbjct: 59  RAFCAGADLSAGGNTFDLDAPRTPVEADEEDRADPSDDGVRDGGGRVT-----LRIFDSL 113

Query: 166 KPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFG 199
           KPVIA V G AVG G  + +  D+ +A+  A FG
Sbjct: 114 KPVIAAVNGPAVGVGATMTLAMDIRLASTAARFG 147

Length = 296

>gnl|CDD|181069 PRK07657, PRK07657, enoyl-CoA hydratase; Provisional

 Score = 90.6 bits (225), Expect = 6e-22
 Identities = 50/146 (34%), Positives = 78/146 (53%), Gaps = 7/146 (4%)

Query: 79  EGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALR 138
             + KIT+NRP   NA     ++EL        ++++V V+ILTG G +AFC+G D  L+
Sbjct: 12  PHVVKITLNRPRAANALSLALLEELQNILTQINEEANVRVVILTGAGEKAFCAGAD--LK 69

Query: 139 TRDGYADYENFGRLNVLDLQ---VQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADN 195
            R G  + +   R  V  ++     + +LP+PVIA + G A+GGG  L + CD  IAA++
Sbjct: 70  ERAGMNEEQ--VRHAVSLIRTTMEMVEQLPQPVIAAINGIALGGGLELALACDFRIAAES 127

Query: 196 AIFGQTGPKVGSFDAGYGSSIMSRLV 221
           A  G T   +       G+  + RL+
Sbjct: 128 ASLGLTETTLAIIPGAGGTQRLPRLI 153

Length = 260

>gnl|CDD|180987 PRK07468, PRK07468, enoyl-CoA hydratase; Provisional

 Score = 90.5 bits (225), Expect = 7e-22
 Identities = 53/145 (36%), Positives = 80/145 (55%), Gaps = 7/145 (4%)

Query: 80  GIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGD----Q 135
           G+A +T+NRP++ NA     + EL  A      D++V V++LTG G ++FC+GGD    +
Sbjct: 14  GVATLTLNRPEKHNALSARMIAELTTAARRLAADAAVRVVVLTGAG-KSFCAGGDLGWMR 72

Query: 136 ALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADN 195
           A  T D     E   RL ++ L+  +  LPKP+I  + G A GGG  L  VCD+ IA   
Sbjct: 73  AQMTADRATRIEEARRLAMM-LKA-LNDLPKPLIGRIQGQAFGGGVGLISVCDVAIAVSG 130

Query: 196 AIFGQTGPKVGSFDAGYGSSIMSRL 220
           A FG T  ++G   A     +++R+
Sbjct: 131 ARFGLTETRLGLIPATISPYVVARM 155

Length = 262

>gnl|CDD|236163 PRK08140, PRK08140, enoyl-CoA hydratase; Provisional

 Score = 90.0 bits (224), Expect = 9e-22
 Identities = 55/152 (36%), Positives = 79/152 (51%), Gaps = 11/152 (7%)

Query: 76  AVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQ 135
           A+  G+A +T+NRPD+ N+F     +EL  A +   DD     ++LTG G   FC+G D 
Sbjct: 9   AIEAGVATLTLNRPDKLNSFTREMHRELREALDQVEDDG-ARALLLTGAG-RGFCAGQDL 66

Query: 136 ALRTRDGYADYENFGRLNVLD-----LQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLT 190
           A R         + G    ++     L  ++R LP PVIA V G A G G  L + CD+ 
Sbjct: 67  ADRDVTPGGAMPDLG--ESIETFYNPLVRRLRALPLPVIAAVNGVAAGAGANLALACDIV 124

Query: 191 IAADNAIFGQTGPKVGSF-DAGYGSSIMSRLV 221
           +AA +A F Q   K+G   D+G G+  + RLV
Sbjct: 125 LAARSASFIQAFVKIGLVPDSG-GTWFLPRLV 155

Length = 262

>gnl|CDD|236162 PRK08138, PRK08138, enoyl-CoA hydratase; Provisional

 Score = 90.1 bits (224), Expect = 1e-21
 Identities = 46/128 (35%), Positives = 69/128 (53%), Gaps = 4/128 (3%)

Query: 79  EGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALR 138
           +G+A + +NRP+ RNA      ++L   F +  +D  +  I+LTG G + F +G D  ++
Sbjct: 16  DGVALLRLNRPEARNALNMEVRQQLAEHFTELSEDPDIRAIVLTG-GEKVFAAGAD--IK 72

Query: 139 TRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIF 198
                   E + R +       I + PKPVIA V GYA+GGG  L M  D+ +A ++A F
Sbjct: 73  EFATAGAIEMYLR-HTERYWEAIAQCPKPVIAAVNGYALGGGCELAMHADIIVAGESASF 131

Query: 199 GQTGPKVG 206
           GQ   KVG
Sbjct: 132 GQPEIKVG 139

Length = 261

>gnl|CDD|236383 PRK09120, PRK09120, p-hydroxycinnamoyl CoA hydratase/lyase; Validated

 Score = 90.1 bits (224), Expect = 1e-21
 Identities = 52/134 (38%), Positives = 69/134 (51%), Gaps = 20/134 (14%)

Query: 77  VGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQA 136
           V +GIA +T+NRP++RNA  P   +E+I   +    D   GV++LTG G +A+ +G D  
Sbjct: 14  VEDGIAWVTLNRPEKRNAMSPTLNREMIDVLDALEFDDDAGVLVLTGAG-DAWSAGMDLK 72

Query: 137 LRTRDGYADYENFGRLNVLDLQVQIRR-----------LPKPVIAMVAGYAVGGGHVLHM 185
              R+  A  E         LQ +IRR             KP IAMV G+  GGG    +
Sbjct: 73  EYFRETDAQPE--------ILQERIRREAYGWWRRLRWYQKPTIAMVNGWCFGGGFSPLV 124

Query: 186 VCDLTIAADNAIFG 199
            CDL IAAD A FG
Sbjct: 125 ACDLAIAADEAQFG 138

Length = 275

>gnl|CDD|180472 PRK06210, PRK06210, enoyl-CoA hydratase; Provisional

 Score = 90.1 bits (224), Expect = 1e-21
 Identities = 61/170 (35%), Positives = 81/170 (47%), Gaps = 21/170 (12%)

Query: 67  EFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGT 126
            +  ++YE A   G+A IT+NRPDR NA+ P    E+  A + A  D +V VI+LTG G 
Sbjct: 3   AYDAVLYEVA-DSGVAVITLNRPDRLNAWTPVMEAEVYAAMDRAEADPAVRVIVLTGAG- 60

Query: 127 EAFCSGGD-QALRTRDGYADYENFGRLNVLDLQVQIRR------------LPKPVIAMVA 173
             FC+G D   L+T D         R   +   V  RR            L KPVIA + 
Sbjct: 61  RGFCAGADMGELQTIDPSDG----RRDTDVRPFVGNRRPDYQTRYHFLTALRKPVIAAIN 116

Query: 174 GYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSS-IMSRLVS 222
           G   G G    ++CD+  AAD A F     + G   A +G S I+ RLV 
Sbjct: 117 GACAGIGLTHALMCDVRFAADGAKFTTAFARRGLI-AEHGISWILPRLVG 165

Length = 272

>gnl|CDD|181249 PRK08139, PRK08139, enoyl-CoA hydratase; Validated

 Score = 88.8 bits (221), Expect = 3e-21
 Identities = 48/133 (36%), Positives = 64/133 (48%), Gaps = 9/133 (6%)

Query: 80  GIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGD----Q 135
           G+A +T+NRP   NA     +  L  A +    D SV V++L   G +AFC+G D    +
Sbjct: 20  GVATLTLNRPQAFNALSEAMLAALQAALDAIAADPSVRVVVLAAAG-KAFCAGHDLKEMR 78

Query: 136 ALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADN 195
           A R    +     F R +   +   I  LP+PVIA V G A   G  L   CDL +AAD 
Sbjct: 79  AARGLAYFRAL--FARCS--RVMQAIVALPQPVIARVHGIATAAGCQLVASCDLAVAADT 134

Query: 196 AIFGQTGPKVGSF 208
           A F   G  +G F
Sbjct: 135 ARFAVPGVNIGLF 147

Length = 266

>gnl|CDD|181723 PRK09245, PRK09245, enoyl-CoA hydratase; Provisional

 Score = 88.5 bits (220), Expect = 4e-21
 Identities = 53/149 (35%), Positives = 77/149 (51%), Gaps = 22/149 (14%)

Query: 71  IIYEKAVGEGIAKITINRPDRRNAF-RPHTVKELIRAFNDARDDSSVGVIILTGKGTEAF 129
           ++ E+     I  +T+NRP+ RNA      V  L+ A      D SV  +ILTG GT AF
Sbjct: 5   LLVERD--GHIVTLTMNRPETRNALSDNDAVDALVAACAAINADRSVRAVILTGAGT-AF 61

Query: 130 CSGGD-QALRTRDGYADYENFGRLNVLDLQVQ----IRRLPK-------PVIAMVAGYAV 177
            SGG+ + +R R G      FG  +  D++      I+R+P        PVIA V G A+
Sbjct: 62  SSGGNVKDMRARVG-----AFG-GSPADIRQGYRHGIQRIPLALYNLEVPVIAAVNGPAI 115

Query: 178 GGGHVLHMVCDLTIAADNAIFGQTGPKVG 206
           G G  L  +CD+ IA++ A F ++  K+G
Sbjct: 116 GAGCDLACMCDIRIASETARFAESFVKLG 144

Length = 266

>gnl|CDD|215480 PLN02888, PLN02888, enoyl-CoA hydratase

 Score = 87.5 bits (217), Expect = 1e-20
 Identities = 59/171 (34%), Positives = 77/171 (45%), Gaps = 19/171 (11%)

Query: 80  GIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRT 139
           GIA ITINRP   NA     + EL  AF    +D SV VIILTG G  AFCSG D     
Sbjct: 19  GIATITINRPKALNALTRPMMVELAAAFKRLDEDDSVKVIILTGSG-RAFCSGVDLTAAE 77

Query: 140 RDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFG 199
                D +        D   Q+ R  KP+I  + G+A+  G  + + CD+ +A+  A F 
Sbjct: 78  EVFKGDVK----DVETDPVAQMERCRKPIIGAINGFAITAGFEIALACDILVASRGAKFI 133

Query: 200 QTGPKVGSFDAGYGSSIMSRLVS--------------TVQQCLWWGLKKHV 236
            T  K G F +   S  +SR++               T +    WGL  HV
Sbjct: 134 DTHAKFGIFPSWGLSQKLSRIIGANRAREVSLTAMPLTAETAERWGLVNHV 184

Length = 265

>gnl|CDD|236213 PRK08272, PRK08272, enoyl-CoA hydratase; Provisional

 Score = 86.2 bits (214), Expect = 6e-20
 Identities = 50/158 (31%), Positives = 69/158 (43%), Gaps = 27/158 (17%)

Query: 66  TEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKG 125
                + YE  V   IA+IT+NRP++ NA    T  EL  A   A  D  V VI+++G G
Sbjct: 7   DNLKTMTYE--VTGRIARITLNRPEKGNAITADTPLELRAAVERADLDPGVHVILVSGAG 64

Query: 126 TEAFCSGGD------QALRTRDGYADYENFGRLN---------VLDLQVQIR-------- 162
            + FC+G D       +     G A       +N         ++D Q+  R        
Sbjct: 65  -KGFCAGYDLSAYAEGSSSGGGGGAYPGKRQAVNHLPDDPWDPMIDYQMMSRFVRGFMSL 123

Query: 163 -RLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFG 199
               KP +A V GY V GG  + + CD  IAAD+A  G
Sbjct: 124 WHAHKPTVAKVHGYCVAGGTDIALHCDQVIAADDAKIG 161

Length = 302

>gnl|CDD|179599 PRK03580, PRK03580, carnitinyl-CoA dehydratase; Provisional

 Score = 83.6 bits (207), Expect = 2e-19
 Identities = 51/134 (38%), Positives = 69/134 (51%), Gaps = 6/134 (4%)

Query: 80  GIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGD-QALR 138
            I +IT++RP + NA    T   +   F + RDD  + V I+TG G + F +G D +A  
Sbjct: 12  SILEITLDRP-KANAIDAKTSFAMGEVFLNFRDDPELRVAIITGAGEKFFSAGWDLKAAA 70

Query: 139 TRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIF 198
             +G A   +FG      L  +I  L KPVIA V GYA GGG  L +  D  + ADNA F
Sbjct: 71  --EGEAPDADFGPGGFAGLT-EIFDLDKPVIAAVNGYAFGGGFELALAADFIVCADNASF 127

Query: 199 GQTGPKVGSF-DAG 211
                K+G   D+G
Sbjct: 128 ALPEAKLGIVPDSG 141

Length = 261

>gnl|CDD|235936 PRK07110, PRK07110, polyketide biosynthesis enoyl-CoA hydratase; Validated

 Score = 82.7 bits (205), Expect = 5e-19
 Identities = 44/152 (28%), Positives = 70/152 (46%), Gaps = 10/152 (6%)

Query: 69  TDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEA 128
             ++  + V EGIA++T+     +NAF      +L  AF+    D    V+ILTG     
Sbjct: 3   MKVVELREVEEGIAQVTMQDRVNKNAFSDELCDQLHEAFDTIAQDPRYKVVILTGYPN-Y 61

Query: 129 FCSGGDQA--LRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMV 186
           F +GG Q   L  + G       G     +L       P PVIA + G+A+GGG VL + 
Sbjct: 62  FATGGTQEGLLSLQTGK------GTFTEANLYSLALNCPIPVIAAMQGHAIGGGLVLGLY 115

Query: 187 CDLTIAADNAIFGQTGPKVGSFDAGYGSSIMS 218
            D+ + +  +++     K G F  G G++ + 
Sbjct: 116 ADIVVLSRESVYTANFMKYG-FTPGMGATAIL 146

Length = 249

>gnl|CDD|180298 PRK05870, PRK05870, enoyl-CoA hydratase; Provisional

 Score = 82.5 bits (204), Expect = 6e-19
 Identities = 48/135 (35%), Positives = 64/135 (47%), Gaps = 4/135 (2%)

Query: 73  YEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSG 132
               V +G+A IT+N PDRRNA       +L  A   A  D  V  +++TG G  AFC+G
Sbjct: 5   VLLDVDDGVALITVNDPDRRNAVTAEMSAQLRAAVAAAEADPDVHALVVTGAGK-AFCAG 63

Query: 133 GD-QALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTI 191
            D  AL    G    +   R  + D  + +   P P IA V G AVG G  L +  D+ I
Sbjct: 64  ADLTALGAAPGRPAEDGLRR--IYDGFLAVASCPLPTIAAVNGAAVGAGLNLALAADVRI 121

Query: 192 AADNAIFGQTGPKVG 206
           A   A+F     K+G
Sbjct: 122 AGPKALFDARFQKLG 136

Length = 249

>gnl|CDD|236205 PRK08259, PRK08259, enoyl-CoA hydratase; Provisional

 Score = 81.5 bits (202), Expect = 1e-18
 Identities = 51/129 (39%), Positives = 65/129 (50%), Gaps = 22/129 (17%)

Query: 80  GIAKITINRPDRRNAFRPHTVKELIRAFN--DARDDSSVGVIILTGKGTEAFCSGGD-QA 136
            +  + +NRP+ RNA    T   L  AF   DA D +SV V  L G G   FC+G D +A
Sbjct: 12  PVTTVILNRPEVRNAVDGPTAAALADAFRAFDADDAASVAV--LWGAG-GTFCAGADLKA 68

Query: 137 LRTRDGYADYENFGRLNVLDLQ------VQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLT 190
           + T          GR N L             RL KPVIA V+GYAV GG  L + CDL 
Sbjct: 69  VGT----------GRGNRLHPSGDGPMGPSRMRLSKPVIAAVSGYAVAGGLELALWCDLR 118

Query: 191 IAADNAIFG 199
           +A ++A+FG
Sbjct: 119 VAEEDAVFG 127

Length = 254

>gnl|CDD|235733 PRK06190, PRK06190, enoyl-CoA hydratase; Provisional

 Score = 81.6 bits (202), Expect = 1e-18
 Identities = 46/143 (32%), Positives = 65/143 (45%), Gaps = 4/143 (2%)

Query: 79  EGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALR 138
           + +  +T+NRP+ RNA      + L  A  +A  D  V V++LTG    AFC+G D    
Sbjct: 12  DRVRTLTLNRPEARNALSAALRRALFAALAEADADDDVDVVVLTGAD-PAFCAGLDLKEL 70

Query: 139 TRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIF 198
             DG A        N          + KPVI  + G AV GG  L + CD+ IA++ A F
Sbjct: 71  GGDGSAYGAQDALPNPS---PAWPAMRKPVIGAINGAAVTGGLELALACDILIASERARF 127

Query: 199 GQTGPKVGSFDAGYGSSIMSRLV 221
             T  +VG       S  + + V
Sbjct: 128 ADTHARVGILPGWGLSVRLPQKV 150

Length = 258

>gnl|CDD|131333 TIGR02280, PaaB1, phenylacetate degradation probable enoyl-CoA hydratase paaB

 Score = 81.0 bits (200), Expect = 2e-18
 Identities = 51/148 (34%), Positives = 73/148 (49%), Gaps = 4/148 (2%)

Query: 76  AVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQ 135
           A+  G+A++T+NRPD+ N+F      EL  A      D     ++LTG G   FC+G D 
Sbjct: 4   ALEAGVARLTLNRPDKLNSFTAEMHLELREALERVERDD-ARALMLTGAG-RGFCAGQDL 61

Query: 136 ALR--TRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAA 193
           + R  T  G  D           L  ++R LP PV+  V G A G G  L + CD+ +AA
Sbjct: 62  SERNPTPGGAPDLGRTIETFYNPLVRRLRALPLPVVCAVNGVAAGAGANLALACDIVLAA 121

Query: 194 DNAIFGQTGPKVGSFDAGYGSSIMSRLV 221
           ++A F Q   K+G      G+  + RLV
Sbjct: 122 ESARFIQAFAKIGLIPDSGGTWSLPRLV 149

This family of proteins are found within apparent operons for the degradation of phenylacetic acid. These proteins contain the enoyl-CoA hydratase domain as detected by pfam00378. This activity is consistent with current hypotheses for the degradation pathway which involve the ligation of phenylacetate with coenzyme A (paaF), hydroxylation (paaGHIJK), ring-opening (paaN) and degradation of the resulting fatty acid-like compound to a Krebs cycle intermediate (paaABCDE). Length = 256

>gnl|CDD|182026 PRK09674, PRK09674, enoyl-CoA hydratase-isomerase; Provisional

 Score = 80.6 bits (199), Expect = 3e-18
 Identities = 43/129 (33%), Positives = 68/129 (52%), Gaps = 12/129 (9%)

Query: 76  AVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQ 135
           +  + +  +T+NRP+ RNA     + +L+     A  D+S+GV ++TG     F +G D 
Sbjct: 7   SRQQRVLLLTLNRPEARNALNNALLTQLVNELEAAATDTSIGVCVITGNA-RFFAAGAD- 64

Query: 136 ALRTRDGYADYENFGRLNVLDLQVQ----IRRLPKPVIAMVAGYAVGGGHVLHMVCDLTI 191
            L      A+ +    LN  D + Q    ++   KP+IA V GYA+G G  L ++CD+ I
Sbjct: 65  -LNE---MAEKDLAATLN--DPRPQLWQRLQAFNKPLIAAVNGYALGAGCELALLCDIVI 118

Query: 192 AADNAIFGQ 200
           A +NA FG 
Sbjct: 119 AGENARFGL 127

Length = 255

>gnl|CDD|168278 PRK05864, PRK05864, enoyl-CoA hydratase; Provisional

 Score = 79.9 bits (197), Expect = 7e-18
 Identities = 48/133 (36%), Positives = 68/133 (51%), Gaps = 15/133 (11%)

Query: 80  GIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALR- 138
            IA IT+NRP+R N+     +  L  A  +   D+SV V++LTG G   F SG D     
Sbjct: 19  EIALITLNRPERMNSMAFDVMVPLKEALAEVSYDNSVRVVVLTGAG-RGFSSGADHKSAG 77

Query: 139 --------TRDGYADYENFGRLNVLD-LQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDL 189
                   TR  YA       + +LD + + +RRL +PVIA V G A+GGG  L +  D+
Sbjct: 78  VVPHVEGLTRPTYA----LRSMELLDDVILALRRLHQPVIAAVNGPAIGGGLCLALAADI 133

Query: 190 TIAADNAIFGQTG 202
            +A+ +A F   G
Sbjct: 134 RVASSSAYFRAAG 146

Length = 276

>gnl|CDD|236115 PRK07854, PRK07854, enoyl-CoA hydratase; Provisional

 Score = 78.5 bits (194), Expect = 1e-17
 Identities = 46/120 (38%), Positives = 62/120 (51%), Gaps = 8/120 (6%)

Query: 79  EGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALR 138
             +  I + RP+RRNA      +EL  A   A  D S   I+LTG+GT  FC+G D +  
Sbjct: 8   GQVLTIELQRPERRNALNAELCEELREAVRKA-VDESARAIVLTGQGT-VFCAGADLS-- 63

Query: 139 TRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIF 198
             D YAD  +F    ++++   I   P PVIA + G A+G G  L M CDL + A  A F
Sbjct: 64  -GDVYAD--DFPD-ALIEMLHAIDAAPVPVIAAINGPAIGAGLQLAMACDLRVVAPEAYF 119

Length = 243

>gnl|CDD|181325 PRK08252, PRK08252, enoyl-CoA hydratase; Provisional

 Score = 78.1 bits (193), Expect = 3e-17
 Identities = 53/131 (40%), Positives = 65/131 (49%), Gaps = 26/131 (19%)

Query: 79  EGIAKITINRPDRRNAFRPHTVKELIRAFN--DARDDSSVGVIILTGKGTEAFCSGGDQA 136
             +  ITINRP+ RNA      + L  A +  DA  D SVG  ILTG G   FC+G D  
Sbjct: 11  GRVLIITINRPEARNAVNAAVAQGLAAALDELDADPDLSVG--ILTGAGG-TFCAGMD-- 65

Query: 137 LRTRDGYADYEN-------FGRLNVLDLQVQIRRLP-KPVIAMVAGYAVGGGHVLHMVCD 188
           L+    +A  E        FG L          R P KP+IA V GYA+ GG  L + CD
Sbjct: 66  LK---AFARGERPSIPGRGFGGLT--------ERPPRKPLIAAVEGYALAGGFELALACD 114

Query: 189 LTIAADNAIFG 199
           L +AA +A FG
Sbjct: 115 LIVAARDAKFG 125

Length = 254

>gnl|CDD|181329 PRK08258, PRK08258, enoyl-CoA hydratase; Provisional

 Score = 78.1 bits (193), Expect = 3e-17
 Identities = 48/155 (30%), Positives = 73/155 (47%), Gaps = 15/155 (9%)

Query: 76  AVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGD- 134
            V +G+A IT+NRP+R+N     +  EL   F +      V  ++LTG G   FCSGGD 
Sbjct: 22  EVDDGVATITLNRPERKNPLTFESYAELRDLFRELVYADDVKAVVLTGAG-GNFCSGGDV 80

Query: 135 -------QALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVC 187
                    +   +  A    F R+   DL   +R  P+P+IA V G   G G +L M  
Sbjct: 81  HEIIGPLTKMDMPELLA----FTRMTG-DLVKAMRACPQPIIAAVDGVCAGAGAILAMAS 135

Query: 188 DLTIAADNAIFGQTGPKVGSFDAGYGS-SIMSRLV 221
           DL +   +A       +VG   A  G+ +++ R++
Sbjct: 136 DLRLGTPSAKTAFLFTRVGLAGADMGACALLPRII 170

Length = 277

>gnl|CDD|180335 PRK05980, PRK05980, enoyl-CoA hydratase; Provisional

 Score = 77.1 bits (190), Expect = 6e-17
 Identities = 49/145 (33%), Positives = 69/145 (47%), Gaps = 3/145 (2%)

Query: 80  GIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRT 139
           GIA +T+NRP++ NA     +  L+   +    D SV  +ILTG G  AF +G D    +
Sbjct: 12  GIALLTLNRPEKLNALNYALIDRLLARLDAIEVDESVRAVILTGAGDRAFSAGADIHEFS 71

Query: 140 RDGYADYENFGRLNVLDLQVQIRRL---PKPVIAMVAGYAVGGGHVLHMVCDLTIAADNA 196
               A  +   R  V   Q    RL   PKPVIA V G A GGG  +     L IA++ A
Sbjct: 72  ASVAAGADVALRDFVRRGQAMTARLEAFPKPVIAAVNGLAFGGGCEITEAVHLAIASERA 131

Query: 197 IFGQTGPKVGSFDAGYGSSIMSRLV 221
           +F +   ++G      G+  + RL 
Sbjct: 132 LFAKPEIRLGMPPTFGGTQRLPRLA 156

Length = 260

>gnl|CDD|235714 PRK06142, PRK06142, enoyl-CoA hydratase; Provisional

 Score = 76.6 bits (189), Expect = 1e-16
 Identities = 44/146 (30%), Positives = 62/146 (42%), Gaps = 15/146 (10%)

Query: 64  SGTEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTG 123
             T +     E A  + +A++T+NRP + NA  P    EL   F     D  V  ++L+G
Sbjct: 1   MMTTYESFTVELA--DHVAQVTLNRPGKGNAMNPAFWSELPEIFRWLDADPEVRAVVLSG 58

Query: 124 KGTEAFCSGGD--------QALRTRDGYADYENFGRLNVLDLQVQIR---RLPKPVIAMV 172
            G + F  G D          L          +  R  +L LQ  I       KPVIA V
Sbjct: 59  SG-KHFSYGIDLPAMAGVFGQLGKDGLARPRTDLRRE-ILRLQAAINAVADCRKPVIAAV 116

Query: 173 AGYAVGGGHVLHMVCDLTIAADNAIF 198
            G+ +GGG  L   CD+  A+ +A F
Sbjct: 117 QGWCIGGGVDLISACDMRYASADAKF 142

Length = 272

>gnl|CDD|168168 PRK05674, PRK05674, gamma-carboxygeranoyl-CoA hydratase; Validated

 Score = 74.8 bits (184), Expect = 5e-16
 Identities = 44/135 (32%), Positives = 68/135 (50%), Gaps = 4/135 (2%)

Query: 66  TEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKG 125
           ++F  I   +    G A + ++R D+ NAF    ++ELI A +  + D+S+  ++L G+G
Sbjct: 2   SDFQTIELIRD-PRGFATLWLSRADKNNAFNAQMIRELILALDQVQSDASLRFLLLRGRG 60

Query: 126 TEAFCSGGDQALRTRDGYADYE-NFGRLNVL-DLQVQIRRLPKPVIAMVAGYAVGGGHVL 183
              F +G D A   +    DY  N      L +L   + RL  P +A+V G A GG   L
Sbjct: 61  RH-FSAGADLAWMQQSADLDYNTNLDDARELAELMYNLYRLKIPTLAVVQGAAFGGALGL 119

Query: 184 HMVCDLTIAADNAIF 198
              CD+ I AD+A F
Sbjct: 120 ISCCDMAIGADDAQF 134

Length = 265

>gnl|CDD|236109 PRK07827, PRK07827, enoyl-CoA hydratase; Provisional

 Score = 73.6 bits (181), Expect = 1e-15
 Identities = 42/133 (31%), Positives = 60/133 (45%), Gaps = 3/133 (2%)

Query: 76  AVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGD- 134
           AV  G+A +T++ P  RNA     V +L      A  D +V  ++LT  G   FC+G D 
Sbjct: 11  AVDGGVATLTLDSPHNRNALSARLVAQLHDGLRAAAADPAVRAVVLTHTGG-TFCAGADL 69

Query: 135 -QALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAA 193
            +A        D        +  L   I  LPKPVIA + G+   GG  L   CD+ +A 
Sbjct: 70  SEAGGGGGDPYDAAVARAREMTALLRAIVELPKPVIAAIDGHVRAGGFGLVGACDIVVAG 129

Query: 194 DNAIFGQTGPKVG 206
             + F  T  ++G
Sbjct: 130 PESTFALTEARIG 142

Length = 260

>gnl|CDD|181122 PRK07799, PRK07799, enoyl-CoA hydratase; Provisional

 Score = 72.8 bits (179), Expect = 2e-15
 Identities = 47/140 (33%), Positives = 73/140 (52%), Gaps = 6/140 (4%)

Query: 84  ITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGY 143
           +T+NRP+ RNA     ++ ++ A++   +D  +   ILTG G  AFC+G D    T+   
Sbjct: 18  VTMNRPEARNALSTEMLRIMVDAWDRVDNDPDIRSCILTGAGG-AFCAGMDLKAATKKPP 76

Query: 144 ADYENFGRLNVLDLQVQI--RRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQT 201
            D    G  +   +   +  RRL KP+IA V G A+ GG  +    D+ +A ++A FG +
Sbjct: 77  GDSFKDGSYDPSRIDALLKGRRLTKPLIAAVEGPAIAGGTEILQGTDIRVAGESAKFGIS 136

Query: 202 GPKVGSFDAGYGSSIMSRLV 221
             K   F  G GS++  RLV
Sbjct: 137 EAKWSLFPMG-GSAV--RLV 153

Length = 263

>gnl|CDD|181070 PRK07658, PRK07658, enoyl-CoA hydratase; Provisional

 Score = 72.7 bits (179), Expect = 2e-15
 Identities = 37/126 (29%), Positives = 59/126 (46%), Gaps = 6/126 (4%)

Query: 76  AVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQ 135
            V + +A IT+N P   NA     + EL    +    D +V V+++ G+G   F +G D 
Sbjct: 7   RVEDHVAVITLNHPPA-NALSSQVLHELSELLDQVEKDDNVRVVVIHGEG-RFFSAGAD- 63

Query: 136 ALRTRDGYADYENFGRLNVLDLQV--QIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAA 193
            ++      + E    L  L      ++ +  KPVIA + G A+GGG  L M C +  A 
Sbjct: 64  -IKEFTSVTEAEQATELAQLGQVTFERVEKFSKPVIAAIHGAALGGGLELAMSCHIRFAT 122

Query: 194 DNAIFG 199
           ++A  G
Sbjct: 123 ESAKLG 128

Length = 257

>gnl|CDD|180910 PRK07260, PRK07260, enoyl-CoA hydratase; Provisional

 Score = 71.3 bits (175), Expect = 7e-15
 Identities = 49/159 (30%), Positives = 75/159 (47%), Gaps = 10/159 (6%)

Query: 68  FTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTE 127
           F  IIYE  V + +A +T+NRP+  N F     +E++ A   A +D SV  +++   G +
Sbjct: 1   FEHIIYE--VEDDLATLTLNRPEVSNGFNIPMCQEILEALRLAEEDPSVRFLLINANG-K 57

Query: 128 AFCSGGD----QALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVL 183
            F  GGD    +     D          L V ++   I++LPKPVI  V G   G    +
Sbjct: 58  VFSVGGDLVEMKRAVDEDDVQSLVKIAEL-VNEISFAIKQLPKPVIMCVDGAVAGAAANM 116

Query: 184 HMVCDLTIAADNAIFGQTGPKVG-SFDAGYGSSIMSRLV 221
            +  D  IA+    F Q    VG + DAG G  +++R +
Sbjct: 117 AVAADFCIASTKTKFIQAFVGVGLAPDAG-GLFLLTRAI 154

Length = 255

>gnl|CDD|236908 PRK11423, PRK11423, methylmalonyl-CoA decarboxylase; Provisional

 Score = 70.4 bits (173), Expect = 2e-14
 Identities = 44/134 (32%), Positives = 60/134 (44%), Gaps = 18/134 (13%)

Query: 81  IAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGD-----Q 135
           IA IT N P +RNA     + +L++A +D        VI+    G++ + +G D      
Sbjct: 14  IATITFNNPAKRNALSKVLIDDLMQALSDLNRPEIRVVILRAPSGSKVWSAGHDIHELPS 73

Query: 136 ALRTRDGYADYENFGRLNVLDLQV---QIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIA 192
             R    Y D           L+     I++ PKPVIAMV G   GG   L M CDL IA
Sbjct: 74  GGRDPLSYDD----------PLRQILRMIQKFPKPVIAMVEGSVWGGAFELIMSCDLIIA 123

Query: 193 ADNAIFGQTGPKVG 206
           A  + F  T   +G
Sbjct: 124 ASTSTFAMTPANLG 137

Length = 261

>gnl|CDD|168580 PRK06495, PRK06495, enoyl-CoA hydratase; Provisional

 Score = 69.3 bits (170), Expect = 4e-14
 Identities = 45/128 (35%), Positives = 65/128 (50%), Gaps = 9/128 (7%)

Query: 76  AVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQ 135
            V + +A +T++ P   NA       ELI  F++  +   V V++LTG G + FC+G D 
Sbjct: 9   EVSDHVAVVTLDNPPV-NALSRELRDELIAVFDEISERPDVRVVVLTGAG-KVFCAGAD- 65

Query: 136 ALRTR----DGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTI 191
            L+ R     G  D     R    +    IR   KPVIA V G A+G G  L   CD+ +
Sbjct: 66  -LKGRPDVIKGPGDLRAHNRR-TRECFHAIRECAKPVIAAVNGPALGAGLGLVASCDIIV 123

Query: 192 AADNAIFG 199
           A++NA+FG
Sbjct: 124 ASENAVFG 131

Length = 257

>gnl|CDD|181008 PRK07509, PRK07509, enoyl-CoA hydratase; Provisional

 Score = 69.1 bits (170), Expect = 5e-14
 Identities = 46/125 (36%), Positives = 66/125 (52%), Gaps = 9/125 (7%)

Query: 79  EGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQA-L 137
           +GIA + +NRPD+ NA      +ELI      + D  +  +IL+G+G  AFC+G D   +
Sbjct: 11  DGIADVRLNRPDKMNALDFAMFEELIATIKRLKKDRGIRAVILSGEGG-AFCAGLDVKSV 69

Query: 138 RTRDGYADYENFGRL----NVLDLQVQI--RRLPKPVIAMVAGYAVGGGHVLHMVCDLTI 191
            +  G A    F RL    N L  +V +  RRLP PVIA + G   GGG  + +  D+ I
Sbjct: 70  ASSPGNAVKLLFKRLPGNAN-LAQRVSLGWRRLPVPVIAALEGVCFGGGLQIALGADIRI 128

Query: 192 AADNA 196
           AA + 
Sbjct: 129 AAPDT 133

Length = 262

>gnl|CDD|178210 PLN02600, PLN02600, enoyl-CoA hydratase

 Score = 68.7 bits (168), Expect = 7e-14
 Identities = 47/151 (31%), Positives = 73/151 (48%), Gaps = 19/151 (12%)

Query: 80  GIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRT 139
           GI ++ ++RP+ +NA     ++ L  AF   + D+S  V++L       FC+G D   R 
Sbjct: 4   GIVELRLDRPEAKNAIGKEMLRGLRSAFEKIQADASARVVMLRSSVPGVFCAGADLKERR 63

Query: 140 RDGYADYENFG---RLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNA 196
           +   ++ + F    R     L+     L  P IA+V G A+GGG  L + CDL I  + A
Sbjct: 64  KMSPSEVQKFVNSLRSTFSSLEA----LSIPTIAVVEGAALGGGLELALSCDLRICGEEA 119

Query: 197 IFG--QTG----PKVGSFDAGYGSSIMSRLV 221
           +FG  +TG    P  G      G+  + RLV
Sbjct: 120 VFGLPETGLAIIPGAG------GTQRLPRLV 144

Length = 251

>gnl|CDD|183548 PRK12478, PRK12478, enoyl-CoA hydratase; Provisional

 Score = 68.8 bits (168), Expect = 9e-14
 Identities = 45/148 (30%), Positives = 69/148 (46%), Gaps = 17/148 (11%)

Query: 66  TEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKG 125
            +F  ++Y  A    +A IT+NRP++ N   P    E+  A   A  D  + VI+L G G
Sbjct: 2   PDFQTLLYTTA--GPVATITLNRPEQLNTIVPPMPDEIEAAIGLAERDQDIKVIVLRGAG 59

Query: 126 TEAFCSGGD---------QALRTRDGYADYENFGRLNVLDLQ-----VQIRRLPKPVIAM 171
             AF  G D         +A+ T   +   ++F  +   +       + I R  KPVIA 
Sbjct: 60  -RAFSGGYDFGGGFQHWGEAMMTDGRWDPGKDFAMVTARETGPTQKFMAIWRASKPVIAQ 118

Query: 172 VAGYAVGGGHVLHMVCDLTIAADNAIFG 199
           V G+ VGG     +  D+ IA+D+A+ G
Sbjct: 119 VHGWCVGGASDYALCADIVIASDDAVIG 146

Length = 298

>gnl|CDD|235661 PRK05981, PRK05981, enoyl-CoA hydratase; Provisional

 Score = 67.5 bits (165), Expect = 2e-13
 Identities = 40/148 (27%), Positives = 66/148 (44%), Gaps = 7/148 (4%)

Query: 80  GIAKITINRPDRRNAFRPHTVKELIRAFNDARDD-SSVGVIILTGKGTEAFCSGGDQALR 138
           G+A +T++ P+  NA     +  L  A +   D  + V  ++LTG G   FC+G +   R
Sbjct: 13  GVAILTLDHPEVMNAVSIDMLGGLAEALDAIEDGKAEVRCLVLTGAG-RGFCTGANLQGR 71

Query: 139 TRDGYADYENFGRLNVLD-----LQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAA 193
              G            L+        ++R LP P++  V G A G G    ++ DL + A
Sbjct: 72  GSGGRESDSGGDAGAALETAYHPFLRRLRNLPCPIVTAVNGPAAGVGMSFALMGDLILCA 131

Query: 194 DNAIFGQTGPKVGSFDAGYGSSIMSRLV 221
            +A F Q   ++G    G  + ++ RLV
Sbjct: 132 RSAYFLQAFRRIGLVPDGGSTWLLPRLV 159

Length = 266

>gnl|CDD|235991 PRK07327, PRK07327, enoyl-CoA hydratase; Provisional

 Score = 67.4 bits (165), Expect = 2e-13
 Identities = 40/123 (32%), Positives = 63/123 (51%), Gaps = 8/123 (6%)

Query: 78  GEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQAL 137
             G+ +I +N P   NA      +EL   + D   D  V V+++ G+G +AF +GGD AL
Sbjct: 19  PPGVLEIVLNGPGALNAADARMHRELADIWRDVDRDPDVRVVLIRGEG-KAFSAGGDLAL 77

Query: 138 RTRDGYADYENFGRLNVL----DLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAA 193
              +   D+E   R  V     DL   +    KP+++ + G AVG G V  ++ D++IAA
Sbjct: 78  -VEEMADDFE--VRARVWREARDLVYNVINCDKPIVSAIHGPAVGAGLVAALLADISIAA 134

Query: 194 DNA 196
            +A
Sbjct: 135 KDA 137

Length = 268

>gnl|CDD|180423 PRK06143, PRK06143, enoyl-CoA hydratase; Provisional

 Score = 63.9 bits (156), Expect = 3e-12
 Identities = 46/128 (35%), Positives = 59/128 (46%), Gaps = 3/128 (2%)

Query: 80  GIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRT 139
           G+A +TI      N      +  L +A      D  V V++L G G +AF  G D     
Sbjct: 16  GVATLTIRNAGSLNILGTPVILALTQALRWLAADPDVRVLVLRGAGEKAFIGGADIKEMA 75

Query: 140 RDGYADYENF-GRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIF 198
               A  E F  RL   DL   +R  P PVIA + G+ +GGG  L   CDL IAA +A F
Sbjct: 76  TLDQASAEAFISRLR--DLCDAVRHFPVPVIARIPGWCLGGGLELAAACDLRIAAHDAQF 133

Query: 199 GQTGPKVG 206
           G    +VG
Sbjct: 134 GMPEVRVG 141

Length = 256

>gnl|CDD|180625 PRK06563, PRK06563, enoyl-CoA hydratase; Provisional

 Score = 63.8 bits (156), Expect = 3e-12
 Identities = 35/130 (26%), Positives = 52/130 (40%), Gaps = 21/130 (16%)

Query: 81  IAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSG-------- 132
           +  I ++RP +RNAF    + +L  A  +   D  + V +L   G E F +G        
Sbjct: 9   VLLIGLDRPAKRNAFDSAMLDDLALALGEYEADDELRVAVLFAHG-EHFTAGLDLADVAP 67

Query: 133 --GDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLT 190
                     +G  D                RRL KP++  V GY +  G  L +  D+ 
Sbjct: 68  KLAAGGFPFPEGGID----------PWGTVGRRLSKPLVVAVQGYCLTLGIELMLAADIV 117

Query: 191 IAADNAIFGQ 200
           +AADN  F Q
Sbjct: 118 VAADNTRFAQ 127

Length = 255

>gnl|CDD|181254 PRK08150, PRK08150, enoyl-CoA hydratase; Provisional

 Score = 63.1 bits (154), Expect = 6e-12
 Identities = 48/156 (30%), Positives = 69/156 (44%), Gaps = 28/156 (17%)

Query: 78  GEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQA- 136
             G+A I +NRP +RNA     +  L  AF    +   V  ++L G+G + FC+G D + 
Sbjct: 9   DGGVATIGLNRPAKRNALNDGLIAALRAAFARLPEG--VRAVVLHGEG-DHFCAGLDLSE 65

Query: 137 LRTRDGYAD-------YENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDL 189
           LR RD           +  F +         I+    PVIA + G  VGGG  L     +
Sbjct: 66  LRERDAGEGMHHSRRWHRVFDK---------IQYGRVPVIAALHGAVVGGGLELASAAHI 116

Query: 190 TIAADNAIF----GQTGPKVGSFDAGYGSSIMSRLV 221
            +A ++  F    GQ G  VG    G GS  + RL+
Sbjct: 117 RVADESTYFALPEGQRGIFVG----GGGSVRVPRLI 148

Length = 255

>gnl|CDD|168351 PRK06023, PRK06023, enoyl-CoA hydratase; Provisional

 Score = 62.9 bits (153), Expect = 7e-12
 Identities = 34/131 (25%), Positives = 60/131 (45%), Gaps = 9/131 (6%)

Query: 71  IIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTE-AF 129
           ++       G+  I  NRP+++NA        + +A   A  D ++   +  G  TE  F
Sbjct: 6   LVERPGAHPGVQVIRFNRPEKKNAITRAMYATMAKALKAADADDAIRAHVFLG--TEGCF 63

Query: 130 CSGGDQA--LRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVC 187
            +G D    L    G   + +     +LD  + +    KP+++ V G A+G G  +H+ C
Sbjct: 64  SAGNDMQDFLAAAMGGTSFGS----EILDFLIALAEAEKPIVSGVDGLAIGIGTTIHLHC 119

Query: 188 DLTIAADNAIF 198
           DLT A+  ++F
Sbjct: 120 DLTFASPRSLF 130

Length = 251

>gnl|CDD|235632 PRK05869, PRK05869, enoyl-CoA hydratase; Validated

 Score = 62.2 bits (151), Expect = 9e-12
 Identities = 50/162 (30%), Positives = 77/162 (47%), Gaps = 12/162 (7%)

Query: 67  EFTDIIYEKAVGE-GIAKITINRPDRRNAFRPHTVKELIRAFND--ARDDSSVGVIILTG 123
           EF +++      + G+A + ++RP   NA      +E++ A N+   RDD  V  +IL G
Sbjct: 3   EFVNVVVSDGSQDAGLATLLLSRPPT-NALTRQVYREIVAAANELGRRDD--VAAVILYG 59

Query: 124 KGTEAFCSGGD-QALRTRDG-YADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGH 181
            G E F +G D   LRT     AD     R   +D    +  +PKP +A + GYA+G G 
Sbjct: 60  -GHEIFSAGDDMPELRTLSAQEADTAARVRQQAVD---AVAAIPKPTVAAITGYALGAGL 115

Query: 182 VLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVST 223
            L +  D  ++ DN  FG T    G   +G G + ++R    
Sbjct: 116 TLALAADWRVSGDNVKFGATEILAGLAPSGDGMARLTRAAGP 157

Length = 222

>gnl|CDD|236073 PRK07659, PRK07659, enoyl-CoA hydratase; Provisional

 Score = 62.0 bits (151), Expect = 2e-11
 Identities = 43/174 (24%), Positives = 74/174 (42%), Gaps = 14/174 (8%)

Query: 66  TEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKG 125
           ++   ++ +      +A I +NRP+  NA     +KEL++A      +SS  +++L G G
Sbjct: 3   SKMESVVVKYE--GRVATIMLNRPEALNALDEPMLKELLQAL-KEVAESSAHIVVLRGNG 59

Query: 126 TEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQI----RRLPKPVIAMVAGYAVGGGH 181
              F +GGD  +       D   F    V++   +I      +PK  I+ + G A G G 
Sbjct: 60  -RGFSAGGDIKMMLSSN--DESKFDG--VMNTISEIVVTLYTMPKLTISAIHGPAAGLGL 114

Query: 182 VLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVSTV--QQCLWWGLK 233
            + +  D  IA  +A        +G    G G   + + V     +Q +W G K
Sbjct: 115 SIALTADYVIADISAKLAMNFIGIGLIPDGGGHFFLQKRVGENKAKQIIWEGKK 168

Length = 260

>gnl|CDD|168377 PRK06072, PRK06072, enoyl-CoA hydratase; Provisional

 Score = 61.3 bits (149), Expect = 2e-11
 Identities = 33/120 (27%), Positives = 50/120 (41%), Gaps = 5/120 (4%)

Query: 79  EGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALR 138
           EG A +T++RPD+ NA       E I        D  + V+I+TG+G  AFC G D +  
Sbjct: 8   EGYAIVTMSRPDKLNALNLEMRNEFISKLKQINADPKIRVVIVTGEG-RAFCVGADLSEF 66

Query: 139 TRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIF 198
             D   D           +  +IR   K  I+ + G   G    + +  D   A+ +  F
Sbjct: 67  APDFAIDLRE----TFYPIIREIRFSDKIYISAINGVTAGACIGIALSTDFKFASRDVKF 122

Length = 248

>gnl|CDD|178269 PLN02664, PLN02664, enoyl-CoA hydratase/delta3,5-delta2,4-dienoyl-CoA isomerase

 Score = 60.3 bits (146), Expect = 8e-11
 Identities = 41/137 (29%), Positives = 65/137 (47%), Gaps = 11/137 (8%)

Query: 72  IYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCS 131
           I +K+    +  + +NRP +RNA       E  +A +    + +V VIIL+G G + FCS
Sbjct: 9   IIQKSPNSSVFHLNLNRPSQRNALSLDFFTEFPKALSSLDQNPNVSVIILSGAG-DHFCS 67

Query: 132 GGD----QALRTRDGYADYENFG---RLNVLDLQ---VQIRRLPKPVIAMVAGYAVGGGH 181
           G D     ++  +    D    G   R  +  LQ     I +  KPVIA + G  +GGG 
Sbjct: 68  GIDLKTLNSISEQSSSGDRGRSGERLRRKIKFLQDAITAIEQCRKPVIAAIHGACIGGGV 127

Query: 182 VLHMVCDLTIAADNAIF 198
            +   CD+   +++A F
Sbjct: 128 DIVTACDIRYCSEDAFF 144

Length = 275

>gnl|CDD|235533 PRK05617, PRK05617, 3-hydroxyisobutyryl-CoA hydrolase; Provisional

 Score = 60.2 bits (147), Expect = 9e-11
 Identities = 41/119 (34%), Positives = 59/119 (49%), Gaps = 15/119 (12%)

Query: 70  DIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAF 129
           +++ E   G G+  IT+NRP   NA     ++ +  A +   DD +V  +++ G G   F
Sbjct: 4   EVLAEVEGGVGV--ITLNRPKALNALSLEMIRAIDAALDAWEDDDAVAAVVIEGAGERGF 61

Query: 130 CSGGD-----QALRTRDGYADYENFG---RLNVLDLQVQIRRLPKPVIAMVAGYAVGGG 180
           C+GGD     +A R  D  A    F    RLN L     I R PKP IA++ G  +GGG
Sbjct: 62  CAGGDIRALYEAARAGDPLAADRFFREEYRLNAL-----IARYPKPYIALMDGIVMGGG 115

Length = 342

>gnl|CDD|181174 PRK07938, PRK07938, enoyl-CoA hydratase; Provisional

 Score = 59.2 bits (144), Expect = 1e-10
 Identities = 37/137 (27%), Positives = 56/137 (40%), Gaps = 20/137 (14%)

Query: 72  IYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCS 131
           I       GIA++T++ P   NA        L  A   A  D    V++L  +G   F +
Sbjct: 3   ITSTTPEPGIAEVTVDYPPV-NALPSAGWFALADAITAAGADPDTRVVVLRAEG-RGFNA 60

Query: 132 GGD-QALRTRDGYA--------DYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHV 182
           G D + L+   G+          +  F           +     PVIA V G+ +GGG  
Sbjct: 61  GVDIKELQATPGFTALIDANRGCFAAFR---------AVYECAVPVIAAVHGFCLGGGIG 111

Query: 183 LHMVCDLTIAADNAIFG 199
           L    D+ +A+D+A FG
Sbjct: 112 LVGNADVIVASDDATFG 128

Length = 249

>gnl|CDD|178568 PLN02988, PLN02988, 3-hydroxyisobutyryl-CoA hydrolase

 Score = 59.3 bits (143), Expect = 2e-10
 Identities = 43/140 (30%), Positives = 65/140 (46%), Gaps = 4/140 (2%)

Query: 84  ITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGY 143
           +T+NRP + NA   H +  L++ F    +D SV ++IL G G  AFC+GGD A   RD  
Sbjct: 22  LTLNRPKQLNALSFHMISRLLQLFLAFEEDPSVKLVILKGHG-RAFCAGGDVAAVVRDIE 80

Query: 144 ADYENFGRLNVLD---LQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQ 200
                 G     D   L   +    K  ++++ G  +GGG  + +     IA +N +F  
Sbjct: 81  QGNWRLGANFFSDEYMLNYVMATYSKAQVSILNGIVMGGGAGVSVHGRFRIATENTVFAM 140

Query: 201 TGPKVGSFDAGYGSSIMSRL 220
               +G F     S  +SRL
Sbjct: 141 PETALGLFPDVGASYFLSRL 160

Length = 381

>gnl|CDD|236864 PRK11154, fadJ, multifunctional fatty acid oxidation complex subunit alpha; Reviewed

 Score = 54.9 bits (133), Expect = 9e-09
 Identities = 33/126 (26%), Positives = 57/126 (45%), Gaps = 15/126 (11%)

Query: 79  EGIAKITINRPDRR-NAFRPHTVKELIRAFNDARDDSSV-GVIILTGKGTEAFCSGGD-- 134
           + IA ITI+ P  + N  +    +++       R+D  + GV+ ++GK  + F +G D  
Sbjct: 14  DNIAVITIDVPGEKMNTLKAEFAEQVRAILKQLREDKELKGVVFISGK-PDNFIAGADIN 72

Query: 135 --QALRTRDGYADYENFGRL--NVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLT 190
              A +T     + E   R    +     +I  LP PV+A + G  +GGG  L + C   
Sbjct: 73  MLAACKTA---QEAEALARQGQQLFA---EIEALPIPVVAAIHGACLGGGLELALACHYR 126

Query: 191 IAADNA 196
           +  D+ 
Sbjct: 127 VCTDDP 132

Length = 708

>gnl|CDD|178462 PLN02874, PLN02874, 3-hydroxyisobutyryl-CoA hydrolase-like protein

 Score = 52.9 bits (127), Expect = 3e-08
 Identities = 45/143 (31%), Positives = 63/143 (44%), Gaps = 12/143 (8%)

Query: 84  ITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRT-RDG 142
           IT+NRP + N      V  L         D SV +II+ G G  AF +GGD  L+   DG
Sbjct: 24  ITLNRPRQLNVISLSVVSLLAEFLEQWEKDDSVELIIIKGAG-RAFSAGGD--LKMFYDG 80

Query: 143 YADYENFGRLNVLD----LQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIF 198
               ++   L V+     L   I    K  +A+V G  +GGG  L +     +  +  +F
Sbjct: 81  RESDDSC--LEVVYRMYWLCYHIHTYKKTQVALVHGLVMGGGAGLMVPMKFRVVTEKTVF 138

Query: 199 GQTGPKVG-SFDAGYGSSIMSRL 220
                 VG   D G+ S I+SRL
Sbjct: 139 ATPEASVGFHTDCGF-SYILSRL 160

Length = 379

>gnl|CDD|235938 PRK07112, PRK07112, polyketide biosynthesis enoyl-CoA hydratase; Validated

 Score = 52.0 bits (125), Expect = 4e-08
 Identities = 36/170 (21%), Positives = 67/170 (39%), Gaps = 21/170 (12%)

Query: 79  EGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGD-QAL 137
             +  + ++RP+ +N      + E +   +     +++  ++L G   E FC G D  A+
Sbjct: 12  GDVCFLQLHRPEAQNTINDRLIAECMDVLDRCEHAATI--VVLEGL-PEVFCFGADFSAI 68

Query: 138 RTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAI 197
             +      +      + DL  ++   P   IA V G    GG       D+ IA + A 
Sbjct: 69  AEKPDAGRADLIDAEPLYDLWHRLATGPYVTIAHVRGKVNAGGIGFVAASDIVIADETAP 128

Query: 198 FGQTG------P---------KVGSFDAGYGSSIMSRLVSTVQQCLWWGL 232
           F  +       P         ++G+  A Y  ++M++ V+  Q    WGL
Sbjct: 129 FSLSELLFGLIPACVLPFLIRRIGTQKAHY-MTLMTQPVTAQQAFS-WGL 176

Length = 255

>gnl|CDD|131490 TIGR02437, FadB, fatty oxidation complex, alpha subunit FadB

 Score = 52.5 bits (126), Expect = 6e-08
 Identities = 44/164 (26%), Positives = 70/164 (42%), Gaps = 23/164 (14%)

Query: 70  DIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAF 129
             I   A+ +GIA++  + P   N F   T+  L +A +  +  SS+  +ILT  G +AF
Sbjct: 6   KTIQVTALEDGIAELKFDAPGSVNKFDRATLASLDQALDAIKAQSSLKGVILT-SGKDAF 64

Query: 130 CSGGD---------QALRTRDGYADYEN--FGRLNVLDLQVQIRRLPKPVIAMVAGYAVG 178
             G D                 +  + N  F +L           LP P +A + G A+G
Sbjct: 65  IVGADITEFLGLFALPDAELIQWLLFANSIFNKL---------EDLPVPTVAAINGIALG 115

Query: 179 GGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSI-MSRLV 221
           GG    +  D  IA D A  G    K+G    G+G ++ + R++
Sbjct: 116 GGCECVLATDFRIADDTAKIGLPETKLGIM-PGFGGTVRLPRVI 158

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399 [Fatty acid and phospholipid metabolism, Degradation]. Length = 714

>gnl|CDD|177817 PLN02157, PLN02157, 3-hydroxyisobutyryl-CoA hydrolase-like protein

 Score = 52.0 bits (124), Expect = 7e-08
 Identities = 50/171 (29%), Positives = 74/171 (43%), Gaps = 17/171 (9%)

Query: 54  DVVWRIACDESGTEFT----DIIYEKAV-GEGIAKITI-NRPDRRNAFRPHTVKELIRAF 107
           D +WR     S         D+ Y+  V G G ++  I NRP   NA   H    L + +
Sbjct: 14  DKLWRFGYRRSFCSLKLTPEDLDYQVLVEGSGCSRTAILNRPPALNALTTHMGYRLQKLY 73

Query: 108 NDARDDSSVGVIILTGKGTEAFCSGGDQA----LRTRDGYAD--YENFGRLNVLDLQVQI 161
            +  +D ++G +++ G G  AFC+GGD      LR R G  D   E F  L        +
Sbjct: 74  KNWEEDPNIGFVMMKGSG-RAFCAGGDIVSLYHLRKR-GSPDAIREFFSSL--YSFIYLL 129

Query: 162 RRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSF-DAG 211
               KP +A++ G  +GGG  + +     +A D  IF      +G   DAG
Sbjct: 130 GTYLKPHVAILNGVTMGGGTGVSIPGTFRVATDRTIFATPETIIGFHPDAG 180

Length = 401

>gnl|CDD|236373 PRK09076, PRK09076, enoyl-CoA hydratase; Provisional

 Score = 49.5 bits (119), Expect = 3e-07
 Identities = 37/149 (24%), Positives = 61/149 (40%), Gaps = 18/149 (12%)

Query: 81  IAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTR 140
           +A +T+N P   N +   +++ L +   +   D  V  +++TG G + F +G D  L   
Sbjct: 13  VAILTLNNPPA-NTWTADSLQALKQLVLELNADKDVYALVITGDGEKFFSAGAD--LNL- 68

Query: 141 DGYADYENFGRLNVLDLQVQ--------IRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIA 192
             +AD    G   V     +        +       IA + GYA+GGG    + CD+ IA
Sbjct: 69  --FAD----GDKAVAREMARRFGEAFEALSAFRGVSIAAINGYAMGGGLECALACDIRIA 122

Query: 193 ADNAIFGQTGPKVGSFDAGYGSSIMSRLV 221
            + A        VG      G+  +  LV
Sbjct: 123 EEQAQMALPEASVGLLPCAGGTQNLPWLV 151

Length = 258

>gnl|CDD|183293 PRK11730, fadB, multifunctional fatty acid oxidation complex subunit alpha; Reviewed

 Score = 48.7 bits (117), Expect = 9e-07
 Identities = 38/165 (23%), Positives = 67/165 (40%), Gaps = 29/165 (17%)

Query: 72  IYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSV-GVIILTGKGTEAFC 130
           +    + +GIA++  + P   N     T+  L  A +     S + G+++ + K   AF 
Sbjct: 8   LQVDWLEDGIAELVFDAPGSVNKLDRATLASLGEALDALEAQSDLKGLLLTSAKD--AFI 65

Query: 131 SGGDQALRTRDGYADYENFGRLNVLDLQV-------------QIRRLPKPVIAMVAGYAV 177
            G           AD   F  L     +              ++  LP P +A + GYA+
Sbjct: 66  VG-----------ADITEFLSLFAAPEEELSQWLHFANSIFNRLEDLPVPTVAAINGYAL 114

Query: 178 GGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSI-MSRLV 221
           GGG    +  D  +A+ +A  G    K+G    G+G ++ + RL+
Sbjct: 115 GGGCECVLATDYRVASPDARIGLPETKLGIM-PGFGGTVRLPRLI 158

Length = 715

>gnl|CDD|178443 PLN02851, PLN02851, 3-hydroxyisobutyryl-CoA hydrolase-like protein

 Score = 48.1 bits (114), Expect = 1e-06
 Identities = 47/191 (24%), Positives = 76/191 (39%), Gaps = 28/191 (14%)

Query: 51  PSHDVVW-RIACDESGTEFT--------DIIYEKAVGEGIAK---ITINRPDRRNAFRPH 98
            +  + W R      G  F+        D + ++ + EG AK     +NRP   NA    
Sbjct: 10  VAVPLQWVRFGSVSYGRSFSALPNYAANDDLQDQVLVEGRAKSRAAILNRPSSLNALTIP 69

Query: 99  TVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGD--------QALRTRDGYADYENFG 150
            V  L R +    ++  +G +++ G G  AFCSG D              +    +EN  
Sbjct: 70  MVARLKRLYESWEENPDIGFVLMKGSG-RAFCSGADVVSLYHLINEGNVEECKLFFENLY 128

Query: 151 RLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSF-D 209
           +   L    Q   L KP +A++ G  +G G  + +     +  D  +F     ++G   D
Sbjct: 129 KFVYL----QGTYL-KPNVAIMDGITMGCGAGISIPGMFRVVTDKTVFAHPEVQMGFHPD 183

Query: 210 AGYGSSIMSRL 220
           AG  S  +SRL
Sbjct: 184 AG-ASYYLSRL 193

Length = 407

>gnl|CDD|131493 TIGR02440, FadJ, fatty oxidation complex, alpha subunit FadJ

 Score = 43.3 bits (102), Expect = 6e-05
 Identities = 36/151 (23%), Positives = 71/151 (47%), Gaps = 13/151 (8%)

Query: 79  EGIAKITINRP-DRRNAFRPHTVKELIRAFNDARDDSSV-GVIILTGKGTEAFCSGGD-- 134
           +GIA +TI+ P ++ N  +     ++    +  + D S+ G+++++GK  + F +G D  
Sbjct: 9   DGIAILTIDVPGEKMNTLKAEFADQVSEILSQLKRDKSIRGLVLVSGK-PDNFIAGADIS 67

Query: 135 --QALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIA 192
              A +T          G+     L  ++  LP PV+A + G  +GGG  L + C   + 
Sbjct: 68  MLAACQTAGEAKALAQQGQ----VLFAELEALPIPVVAAIHGACLGGGLELALACHSRVC 123

Query: 193 ADN--AIFGQTGPKVGSFDAGYGSSIMSRLV 221
           +D+   + G    ++G      G+  + RL+
Sbjct: 124 SDDDKTVLGLPEVQLGLLPGSGGTQRLPRLI 154

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog model [Fatty acid and phospholipid metabolism, Degradation]. Length = 699

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	240
PLN02921	327	naphthoate synthase	100.0
PRK07396	273	dihydroxynaphthoic acid synthetase; Validated	100.0
TIGR03210	256	badI 2-ketocyclohexanecarboxyl-CoA hydrolase. Memb	100.0
TIGR01929	259	menB naphthoate synthase (dihydroxynaphthoic acid	100.0
PRK09120	275	p-hydroxycinnamoyl CoA hydratase/lyase; Validated	100.0
PRK09076	258	enoyl-CoA hydratase; Provisional	100.0
COG1024	257	CaiD Enoyl-CoA hydratase/carnithine racemase [Lipi	100.0
PRK05809	260	3-hydroxybutyryl-CoA dehydratase; Validated	100.0
KOG1680	290	consensus Enoyl-CoA hydratase [Lipid transport and	100.0
PRK05980	260	enoyl-CoA hydratase; Provisional	100.0
PRK07657	260	enoyl-CoA hydratase; Provisional	100.0
PRK05862	257	enoyl-CoA hydratase; Provisional	100.0
PRK06143	256	enoyl-CoA hydratase; Provisional	100.0
PRK06142	272	enoyl-CoA hydratase; Provisional	100.0
PRK06563	255	enoyl-CoA hydratase; Provisional	100.0
PRK05870	249	enoyl-CoA hydratase; Provisional	100.0
PRK06190	258	enoyl-CoA hydratase; Provisional	100.0
PRK06144	262	enoyl-CoA hydratase; Provisional	100.0
PRK09674	255	enoyl-CoA hydratase-isomerase; Provisional	100.0
PRK07327	268	enoyl-CoA hydratase; Provisional	100.0
PRK08150	255	enoyl-CoA hydratase; Provisional	100.0
PRK07799	263	enoyl-CoA hydratase; Provisional	100.0
PLN02664	275	enoyl-CoA hydratase/delta3,5-delta2,4-dienoyl-CoA	100.0
PRK07658	257	enoyl-CoA hydratase; Provisional	100.0
PRK07659	260	enoyl-CoA hydratase; Provisional	100.0
PLN02600	251	enoyl-CoA hydratase	100.0
PRK08140	262	enoyl-CoA hydratase; Provisional	100.0
PRK05995	262	enoyl-CoA hydratase; Provisional	100.0
PRK06494	259	enoyl-CoA hydratase; Provisional	100.0
PRK08260	296	enoyl-CoA hydratase; Provisional	100.0
PRK08138	261	enoyl-CoA hydratase; Provisional	100.0
PRK06127	269	enoyl-CoA hydratase; Provisional	100.0
PRK05674	265	gamma-carboxygeranoyl-CoA hydratase; Validated	100.0
PRK06023	251	enoyl-CoA hydratase; Provisional	100.0
TIGR02280	256	PaaB1 phenylacetate degradation probable enoyl-CoA	100.0
PRK09245	266	enoyl-CoA hydratase; Provisional	100.0
PRK07511	260	enoyl-CoA hydratase; Provisional	100.0
PRK08321	302	naphthoate synthase; Validated	100.0
PRK05981	266	enoyl-CoA hydratase; Provisional	100.0
PRK07260	255	enoyl-CoA hydratase; Provisional	100.0
PRK07509	262	enoyl-CoA hydratase; Provisional	100.0
PRK06210	272	enoyl-CoA hydratase; Provisional	100.0
PRK05864	276	enoyl-CoA hydratase; Provisional	100.0
PRK05869	222	enoyl-CoA hydratase; Validated	100.0
PRK08139	266	enoyl-CoA hydratase; Validated	100.0
PRK06688	259	enoyl-CoA hydratase; Provisional	100.0
PRK11423	261	methylmalonyl-CoA decarboxylase; Provisional	100.0
PLN02888	265	enoyl-CoA hydratase	100.0
PRK07468	262	enoyl-CoA hydratase; Provisional	100.0
PRK08252	254	enoyl-CoA hydratase; Provisional	100.0
PRK07854	243	enoyl-CoA hydratase; Provisional	100.0
PRK03580	261	carnitinyl-CoA dehydratase; Provisional	100.0
PRK07110	249	polyketide biosynthesis enoyl-CoA hydratase; Valid	100.0
PRK08258	277	enoyl-CoA hydratase; Provisional	100.0
PRK06072	248	enoyl-CoA hydratase; Provisional	100.0
PRK08259	254	enoyl-CoA hydratase; Provisional	100.0
TIGR03189	251	dienoyl_CoA_hyt cyclohexa-1,5-dienecarbonyl-CoA hy	100.0
PLN02157	401	3-hydroxyisobutyryl-CoA hydrolase-like protein	100.0
PRK07827	260	enoyl-CoA hydratase; Provisional	100.0
PLN02851	407	3-hydroxyisobutyryl-CoA hydrolase-like protein	100.0
PRK06495	257	enoyl-CoA hydratase; Provisional	100.0
PRK08788	287	enoyl-CoA hydratase; Validated	100.0
PRK08290	288	enoyl-CoA hydratase; Provisional	100.0
PLN02874	379	3-hydroxyisobutyryl-CoA hydrolase-like protein	100.0
PF00378	245	ECH: Enoyl-CoA hydratase/isomerase family; InterPr	100.0
PRK05617	342	3-hydroxyisobutyryl-CoA hydrolase; Provisional	100.0
PRK07112	255	polyketide biosynthesis enoyl-CoA hydratase; Valid	100.0
PLN03214	278	probable enoyl-CoA hydratase/isomerase; Provisiona	100.0
PRK07938	249	enoyl-CoA hydratase; Provisional	100.0
TIGR03200	360	dearomat_oah 6-oxocyclohex-1-ene-1-carbonyl-CoA hy	100.0
PLN02988	381	3-hydroxyisobutyryl-CoA hydrolase	100.0
PRK08272	302	enoyl-CoA hydratase; Provisional	100.0
PRK12478	298	enoyl-CoA hydratase; Provisional	100.0
COG0447	282	MenB Dihydroxynaphthoic acid synthase [Coenzyme me	100.0
PLN02267	239	enoyl-CoA hydratase/isomerase family protein	100.0
PRK06213	229	enoyl-CoA hydratase; Provisional	100.0
PRK11730	715	fadB multifunctional fatty acid oxidation complex	100.0
KOG1679	291	consensus Enoyl-CoA hydratase [Lipid transport and	100.0
TIGR02437	714	FadB fatty oxidation complex, alpha subunit FadB.	100.0
PRK11154	708	fadJ multifunctional fatty acid oxidation complex	100.0
cd06558	195	crotonase-like Crotonase/Enoyl-Coenzyme A (CoA) hy	100.0
TIGR02441	737	fa_ox_alpha_mit fatty acid oxidation complex, alph	100.0
TIGR03222	546	benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the p	100.0
TIGR02440	699	FadJ fatty oxidation complex, alpha subunit FadJ.	100.0
PRK08184	550	benzoyl-CoA-dihydrodiol lyase; Provisional	100.0
TIGR03222	546	benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the p	100.0
KOG1681	292	consensus Enoyl-CoA isomerase [Lipid transport and	100.0
PRK08184	550	benzoyl-CoA-dihydrodiol lyase; Provisional	100.0
KOG0016	266	consensus Enoyl-CoA hydratase/isomerase [Lipid tra	100.0
KOG1684	401	consensus Enoyl-CoA hydratase [Lipid transport and	99.97
KOG1682	287	consensus Enoyl-CoA isomerase [Lipid transport and	99.96
cd07014	177	S49_SppA Signal peptide peptidase A. Signal peptid	99.69
cd07020	187	Clp_protease_NfeD_1 Nodulation formation efficienc	99.64
cd07019	211	S49_SppA_1 Signal peptide peptidase A (SppA), a se	99.52
cd07022	214	S49_Sppa_36K_type Signal peptide peptidase A (SppA	99.37
cd07023	208	S49_Sppa_N_C Signal peptide peptidase A (SppA), a	99.35
cd00394	161	Clp_protease_like Caseinolytic protease (ClpP) is	99.23
cd07016	160	S14_ClpP_1 Caseinolytic protease (ClpP) is an ATP-	99.14
TIGR00706	207	SppA_dom signal peptide peptidase SppA, 36K type.	99.13
TIGR00705	584	SppA_67K signal peptide peptidase SppA, 67K type.	99.08
cd07018	222	S49_SppA_67K_type Signal peptide peptidase A (SppA	98.96
cd07021	178	Clp_protease_NfeD_like Nodulation formation effici	98.88
cd07015	172	Clp_protease_NfeD Nodulation formation efficiency	97.85
KOG1683	380	consensus Hydroxyacyl-CoA dehydrogenase/enoyl-CoA	97.82
PRK10949	618	protease 4; Provisional	97.64
PF01972	285	SDH_sah: Serine dehydrogenase proteinase; InterPro	97.59
PRK07189	301	malonate decarboxylase subunit beta; Reviewed	97.55
cd07013	162	S14_ClpP Caseinolytic protease (ClpP) is an ATP-de	97.55
TIGR03133	274	malonate_beta malonate decarboxylase, beta subunit	97.48
CHL00198	322	accA acetyl-CoA carboxylase carboxyltransferase al	97.12
PF00574	182	CLP_protease: Clp protease; InterPro: IPR001907 In	97.12
PRK12319	256	acetyl-CoA carboxylase subunit alpha; Provisional	97.07
COG0616	317	SppA Periplasmic serine proteases (ClpP class) [Po	97.01
PRK00277	200	clpP ATP-dependent Clp protease proteolytic subuni	96.96
cd07017	171	S14_ClpP_2 Caseinolytic protease (ClpP) is an ATP-	96.89
PRK11778	330	putative inner membrane peptidase; Provisional	96.84
PRK12553	207	ATP-dependent Clp protease proteolytic subunit; Re	96.76
TIGR00705	584	SppA_67K signal peptide peptidase SppA, 67K type.	96.68
TIGR00513	316	accA acetyl-CoA carboxylase, carboxyl transferase,	96.67
PF01039	493	Carboxyl_trans: Carboxyl transferase domain; Inter	96.66
PLN03229	762	acetyl-coenzyme A carboxylase carboxyl transferase	96.62
PLN03230	431	acetyl-coenzyme A carboxylase carboxyl transferase	96.6
CHL00174	296	accD acetyl-CoA carboxylase beta subunit; Reviewed	96.52
PRK05724	319	acetyl-CoA carboxylase carboxyltransferase subunit	96.47
TIGR00515	285	accD acetyl-CoA carboxylase, carboxyl transferase,	96.45
PRK05654	292	acetyl-CoA carboxylase subunit beta; Validated	96.28
PRK14512	197	ATP-dependent Clp protease proteolytic subunit; Pr	96.25
PRK10949	618	protease 4; Provisional	95.84
PLN02820	569	3-methylcrotonyl-CoA carboxylase, beta chain	95.72
TIGR01117	512	mmdA methylmalonyl-CoA decarboxylase alpha subunit	95.53
CHL00028	200	clpP ATP-dependent Clp protease proteolytic subuni	95.48
TIGR01117	512	mmdA methylmalonyl-CoA decarboxylase alpha subunit	95.48
TIGR00493	191	clpP ATP-dependent Clp protease, proteolytic subun	95.25
COG1030	436	NfeD Membrane-bound serine protease (ClpP class) [	95.07
PF01343	154	Peptidase_S49: Peptidase family S49 peptidase clas	94.88
COG4799	526	Acetyl-CoA carboxylase, carboxyltransferase compon	94.77
PRK12551	196	ATP-dependent Clp protease proteolytic subunit; Re	94.32
PRK14514	221	ATP-dependent Clp protease proteolytic subunit; Pr	93.77
PRK14513	201	ATP-dependent Clp protease proteolytic subunit; Pr	93.7
COG0777	294	AccD Acetyl-CoA carboxylase beta subunit [Lipid me	93.51
TIGR03134	238	malonate_gamma malonate decarboxylase, gamma subun	93.1
PF01039	493	Carboxyl_trans: Carboxyl transferase domain; Inter	89.62
COG0074	293	SucD Succinyl-CoA synthetase, alpha subunit [Energ	86.99
PLN02820	569	3-methylcrotonyl-CoA carboxylase, beta chain	86.49
COG0740	200	ClpP Protease subunit of ATP-dependent Clp proteas	84.34
PF02601	319	Exonuc_VII_L: Exonuclease VII, large subunit; Inte	81.12
PRK12552	222	ATP-dependent Clp protease-like protein; Reviewed	80.61

>PLN02921 naphthoate synthase

Probab=100.00  E-value=3.3e-53  Score=377.84  Aligned_cols=234  Identities=72%  Similarity=1.104  Sum_probs=204.7

Q ss_pred             hHHHhHhHHHhhhccccCccCCCCCCccccCCCcCCCccccccCCcccCcccceeeccCCCCcceeEEEEEEeCCCEEEE
Q 026342            5 IDSARRRMTAVANHLVPVISSDSNSGFIGLNNASMNDSYHRIHGEVPSHDVVWRIACDESGTEFTDIIYEKAVGEGIAKI   84 (240)
Q Consensus         5 ~~~~~~r~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~v~~I   84 (240)
                      |+++.||++++++|+.|++..++..++...+..+.+++|++.|+.|+.+|..|..++.+++.+|++|.++++.+++|++|
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~Va~I   80 (327)
T PLN02921          1 MDAARRRLARVANHLVPSANPASMAAARSSSATAPPDSYRRVHGDVSSEPVVWRKVPDGSGKEFTDIIYEKAVGEGIAKI   80 (327)
T ss_pred             CchhhhHHHHHhcccCcccccccccccccccccCCCCchhhhccccCCCCccccccccCCccCCceEEEEEecCCCEEEE
Confidence            68899999999999998777666666545556688999999999999999999999888888999999987435899999


Q ss_pred             EEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccchhhhhhhhHHHHHHHHHcC
Q 026342           85 TINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRL  164 (240)
Q Consensus        85 tlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~i~~~  164 (240)
                      +||||+++|+||.+|+.+|.++|+.++.|+++++|||+|.|+++||+|+|++++.................+++.+|.++
T Consensus        81 tLnrP~~~Nal~~~~~~eL~~al~~~~~d~~vrvVVLtg~G~k~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~  160 (327)
T PLN02921         81 TINRPERRNAFRPRTVKELQRAFNDARDDSSVGVIILTGKGTKAFCSGGDQAVRGKDGYVGPDDAGRLNVLDLQIQIRRL  160 (327)
T ss_pred             EECCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEecCCCCceecCcChhhhhcccccchhHHHHHHHHHHHHHHHhC
Confidence            99999999999999999999999999999999999999999679999999987643211111111111234567789999


Q ss_pred             CCcEEEEECchhchhhHHHhhhcCEEEEeCCcEEecccccccccCCCchHHHHHhhcCHHHHHHHHhcCCcccc
Q 026342          165 PKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVSTVQQCLWWGLKKHVKC  238 (240)
Q Consensus       165 ~kP~IAav~G~a~GgG~~lal~~D~rias~~a~f~~pe~~~Gl~p~~g~~~~l~rlvG~~~a~ellltG~~i~A  238 (240)
                      ||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|+++++++|++++|.++|++|+++|+.|+|
T Consensus       161 ~kPvIAaVnG~a~GGG~~LalacD~riA~~~A~f~~pe~~~Gl~p~~gg~~~L~rliG~~~A~ellltG~~~~A  234 (327)
T PLN02921        161 PKPVIAMVAGYAVGGGHILHMVCDLTIAADNAVFGQTGPKVGSFDAGYGSSIMARLVGQKKAREMWFLARFYTA  234 (327)
T ss_pred             CCCEEEEECCEEecHHHHHHHhCCEEEEeCCCEEeCcccccCCCCCccHHHHHHHHhCHHHHHHHHHcCCcCCH
Confidence            99999999999999999999999999999999999999999999999899999999999999999999999987

>PRK07396 dihydroxynaphthoic acid synthetase; Validated

Probab=100.00  E-value=1.8e-42  Score=302.47  Aligned_cols=171  Identities=66%  Similarity=1.081  Sum_probs=149.2

Q ss_pred             CcceeEEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccc
Q 026342           66 TEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYAD  145 (240)
Q Consensus        66 ~~~~~v~~~~~~~~~v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~  145 (240)
                      ++++.|.+++  +++|++|+||||+++|+||.+|+.+|.++++.++.|+++|+|||+|.|+++||+|+|++++.......
T Consensus        10 ~~~~~i~~~~--~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~   87 (273)
T PRK07396         10 KEYEDILYKS--ADGIAKITINRPEVRNAFRPKTVKEMIDAFADARDDDNIGVIILTGAGDKAFCSGGDQKVRGYGGYVD   87 (273)
T ss_pred             CCCcceEEEe--cCCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCceEEEEEeCCCCceEeCcChhhhhcccccc
Confidence            4677788887  79999999999999999999999999999999999999999999999856999999998754221111


Q ss_pred             hhhhhhhhHHHHHHHHHcCCCcEEEEECchhchhhHHHhhhcCEEEEeCCcEEecccccccccCCCchHHHHHhhcCHHH
Q 026342          146 YENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVSTVQ  225 (240)
Q Consensus       146 ~~~~~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~a~f~~pe~~~Gl~p~~g~~~~l~rlvG~~~  225 (240)
                      ..........+++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|+++++++|++++|..+
T Consensus        88 ~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~~~~~~l~~~vG~~~  167 (273)
T PRK07396         88 DDGVPRLNVLDLQRLIRTCPKPVIAMVAGYAIGGGHVLHLVCDLTIAADNAIFGQTGPKVGSFDGGYGASYLARIVGQKK  167 (273)
T ss_pred             hhhhhhhHHHHHHHHHHhCCCCEEEEECCEEehHHHHHHHhCCEEEeeCCcEEecccccccccCCchHHHHHHHHhhHHH
Confidence            11111112345677899999999999999999999999999999999999999999999999999888999999999999


Q ss_pred             HHHHHhcCCcccc
Q 026342          226 QCLWWGLKKHVKC  238 (240)
Q Consensus       226 a~ellltG~~i~A  238 (240)
                      |++|+++|+.|+|
T Consensus       168 a~~l~ltg~~~~A  180 (273)
T PRK07396        168 AREIWFLCRQYDA  180 (273)
T ss_pred             HHHHHHhCCCcCH
Confidence            9999999999986

>TIGR03210 badI 2-ketocyclohexanecarboxyl-CoA hydrolase

Probab=100.00  E-value=2e-42  Score=299.60  Aligned_cols=167  Identities=49%  Similarity=0.853  Sum_probs=146.9

Q ss_pred             ceeEEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccchh
Q 026342           68 FTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYE  147 (240)
Q Consensus        68 ~~~v~~~~~~~~~v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~~  147 (240)
                      |++|.++.  +++|++||||||+++|+||.+|+.+|.++++.++.|+++|+|||+|.|+++||+|+|++++... .....
T Consensus         1 ~~~i~~~~--~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVl~g~g~~~F~aG~Dl~~~~~~-~~~~~   77 (256)
T TIGR03210         1 YEDILYEK--RNGIAWIMINRPAKMNAFRGQTCDELIHALKDAGYDRQIGVIVLAGAGDKAFCTGGDQSTHDGG-YDGRG   77 (256)
T ss_pred             CCceEEEe--eCCEEEEEEcCCccccCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCceecCcChHHHhcc-ccchh
Confidence            34577877  7999999999999999999999999999999999999999999999986799999999976321 11111


Q ss_pred             hhhhhhHHHHHHHHHcCCCcEEEEECchhchhhHHHhhhcCEEEEeCCcEEecccccccccCCCchHHHHHhhcCHHHHH
Q 026342          148 NFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVSTVQQC  227 (240)
Q Consensus       148 ~~~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~a~f~~pe~~~Gl~p~~g~~~~l~rlvG~~~a~  227 (240)
                      .. ...+.+++.++.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|+++++++|++++|..+|+
T Consensus        78 ~~-~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~G~~~~~~~~~~l~~~vG~~~A~  156 (256)
T TIGR03210        78 TI-GLPMEELHSAIRDVPKPVIARVQGYAIGGGNVLVTICDLTIASEKAQFGQVGPKVGSVDPGYGTALLARVVGEKKAR  156 (256)
T ss_pred             HH-HHHHHHHHHHHHhCCCCEEEEECCEEehhhHHHHHhCCEEEEeCCCEEecccccccccCCccHHHHHHHHhCHHHHH
Confidence            11 11235677889999999999999999999999999999999999999999999999998887899999999999999


Q ss_pred             HHHhcCCcccc
Q 026342          228 LWWGLKKHVKC  238 (240)
Q Consensus       228 ellltG~~i~A  238 (240)
                      +|+++|+.|+|
T Consensus       157 ~lll~g~~~~a  167 (256)
T TIGR03210       157 EIWYLCRRYTA  167 (256)
T ss_pred             HHHHhCCCcCH
Confidence            99999999986

Members of this protein family are 2-ketocyclohexanecarboxyl-CoA hydrolase, a ring-opening enzyme that acts in catabolism of molecules such as benzoyl-CoA and cyclohexane carboxylate. It converts -ketocyclohexanecarboxyl-CoA to pimelyl-CoA. It is not sensitive to oxygen.

>TIGR01929 menB naphthoate synthase (dihydroxynaphthoic acid synthetase)

Probab=100.00  E-value=2.4e-42  Score=299.63  Aligned_cols=169  Identities=65%  Similarity=1.038  Sum_probs=145.7

Q ss_pred             eeEEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccchhh
Q 026342           69 TDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYEN  148 (240)
Q Consensus        69 ~~v~~~~~~~~~v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~~~  148 (240)
                      ++|.+++. +++|++|+||||+++|+||.+|+.+|.++++.++.|+++|+|||||.|+++||+|+|++++..........
T Consensus         2 ~~i~~~~~-~~~v~~itlnrp~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~   80 (259)
T TIGR01929         2 TDIRYEKS-TDGIAKITINRPQVRNAFRPLTVKEIIQALDDAREDPDIGVVILTGAGDKAFCSGGDQKVRGDYGYIDDSG   80 (259)
T ss_pred             ceEEEEEc-CCCEEEEEecCCccccCCCHHHHHHHHHHHHHHhhCCCeEEEEEEeCCCCceEeCcChHhHhhccccchhh
Confidence            45667652 58999999999999999999999999999999999999999999999867999999998653211111111


Q ss_pred             hhhhhHHHHHHHHHcCCCcEEEEECchhchhhHHHhhhcCEEEEeCCcEEecccccccccCCCchHHHHHhhcCHHHHHH
Q 026342          149 FGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVSTVQQCL  228 (240)
Q Consensus       149 ~~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~a~f~~pe~~~Gl~p~~g~~~~l~rlvG~~~a~e  228 (240)
                      .....+.+++..+.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|+++++++|++++|+.+|++
T Consensus        81 ~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~p~~~~~~~l~~~vG~~~a~~  160 (259)
T TIGR01929        81 VHRLNVLDVQRQIRTCPKPVIAMVNGYAIGGGHVLHVVCDLTIAAENARFGQTGPKVGSFDGGYGSSYLARIVGQKKARE  160 (259)
T ss_pred             HHHHHHHHHHHHHHhCCCCEEEEEcCEEehHHHHHHHhCCEEEecCCCEecCcccccccCCCccHHHHHHHHhHHHHHHH
Confidence            11112345677899999999999999999999999999999999999999999999999999889999999999999999


Q ss_pred             HHhcCCcccc
Q 026342          229 WWGLKKHVKC  238 (240)
Q Consensus       229 llltG~~i~A  238 (240)
                      |+++|++++|
T Consensus       161 l~l~g~~~~a  170 (259)
T TIGR01929       161 IWFLCRQYDA  170 (259)
T ss_pred             HHHhCCccCH
Confidence            9999999986

This model represents an enzyme, naphthoate synthase (dihydroxynaphthoic acid synthetase), which is involved in the fifth step of the menaquinone biosynthesis pathway. Together with o-succinylbenzoate-CoA ligase (menE: TIGR01923), this enzyme takes 2-succinylbenzoate and converts it into 1,4-di-hydroxy-2-naphthoate. Included above the trusted cutoff are two enzymes from Arabadopsis thaliana and one from Staphylococcus aureus which are identified as putative enoyl-CoA hydratase/isomerases. These enzymes group with the naphthoate synthases when building a tree and when doing BLAST searches.

>PRK09120 p-hydroxycinnamoyl CoA hydratase/lyase; Validated

Probab=100.00  E-value=3.1e-42  Score=301.26  Aligned_cols=170  Identities=31%  Similarity=0.447  Sum_probs=149.0

Q ss_pred             CcceeEEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccc
Q 026342           66 TEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYAD  145 (240)
Q Consensus        66 ~~~~~v~~~~~~~~~v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~  145 (240)
                      .+|+.|.+++  +++|++|+||||+++|+||.+|+.+|.++++.++.|+++|+|||+|.| ++||+|+|++++.......
T Consensus         5 ~~~~~i~~~~--~~~va~itlnrp~~~Nal~~~m~~el~~al~~~~~d~~vr~vVl~g~g-~~F~aG~Dl~~~~~~~~~~   81 (275)
T PRK09120          5 NRWDTVKVEV--EDGIAWVTLNRPEKRNAMSPTLNREMIDVLDALEFDDDAGVLVLTGAG-DAWSAGMDLKEYFRETDAQ   81 (275)
T ss_pred             cccccEEEEE--ECCEEEEEecCcccccCCCHHHHHHHHHHHHHHHhCCCceEEEEEcCC-CceecCcCHHHHhhccccc
Confidence            3577889987  789999999999999999999999999999999999999999999999 7999999998753211111


Q ss_pred             -h--hhhhhhhHHHHHHHHHcCCCcEEEEECchhchhhHHHhhhcCEEEEeCCcEEecccccccccCCCchHHHHHhhcC
Q 026342          146 -Y--ENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVS  222 (240)
Q Consensus       146 -~--~~~~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~a~f~~pe~~~Gl~p~~g~~~~l~rlvG  222 (240)
                       .  .........+++.+|.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|+++++++|++++|
T Consensus        82 ~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG  161 (275)
T PRK09120         82 PEILQERIRREAYGWWRRLRWYQKPTIAMVNGWCFGGGFSPLVACDLAIAADEAQFGLSEINWGIPPGGGVSKAMADTVG  161 (275)
T ss_pred             hhHHHHHHHHHHHHHHHHHHhCCCCEEEEEcCEEechhHHHHHhCCEEEEeCCcEecCCccccCCCCCcchHHHHHHHcC
Confidence             1  0111112345678899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCcccc
Q 026342          223 TVQQCLWWGLKKHVKC  238 (240)
Q Consensus       223 ~~~a~ellltG~~i~A  238 (240)
                      ..+|++|+++|+.|+|
T Consensus       162 ~~~a~~llltg~~~~A  177 (275)
T PRK09120        162 HRDALYYIMTGETFTG  177 (275)
T ss_pred             HHHHHHHHhcCCccCH
Confidence            9999999999999986

>PRK09076 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=3.6e-42  Score=298.29  Aligned_cols=167  Identities=22%  Similarity=0.321  Sum_probs=146.6

Q ss_pred             ceeEEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccchh
Q 026342           68 FTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYE  147 (240)
Q Consensus        68 ~~~v~~~~~~~~~v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~~  147 (240)
                      +..|.+++  +++|++||||||++ |+||.+|+.+|.++++.+++|+++|+|||+|.|+++||+|+|++++.........
T Consensus         2 ~~~v~~~~--~~~v~~itlnrp~~-Nal~~~~~~~l~~al~~~~~d~~vrvvVl~g~g~~~F~aG~Dl~~~~~~~~~~~~   78 (258)
T PRK09076          2 MIELDLEI--DGHVAILTLNNPPA-NTWTADSLQALKQLVLELNADKDVYALVITGDGEKFFSAGADLNLFADGDKAVAR   78 (258)
T ss_pred             ceEEEEEE--ECCEEEEEECCCCc-CCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCceEeCcCHHHHhhcChhhHH
Confidence            34577877  78999999999985 9999999999999999999999999999999986799999999876432211111


Q ss_pred             hhhhhhHHHHHHHHHcCCCcEEEEECchhchhhHHHhhhcCEEEEeCCcEEecccccccccCCCchHHHHHhhcCHHHHH
Q 026342          148 NFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVSTVQQC  227 (240)
Q Consensus       148 ~~~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~a~f~~pe~~~Gl~p~~g~~~~l~rlvG~~~a~  227 (240)
                      .... .+.+++.++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|+++++++|++++|..+|+
T Consensus        79 ~~~~-~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~~~a~  157 (258)
T PRK09076         79 EMAR-RFGEAFEALSAFRGVSIAAINGYAMGGGLECALACDIRIAEEQAQMALPEASVGLLPCAGGTQNLPWLVGEGWAK  157 (258)
T ss_pred             HHHH-HHHHHHHHHHhCCCCEEEEECCEEecHHHHHHHhCCEEEecCCCEeeCcccccCCCCCccHHHHHHHHhCHHHHH
Confidence            1111 245677889999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCcccc
Q 026342          228 LWWGLKKHVKC  238 (240)
Q Consensus       228 ellltG~~i~A  238 (240)
                      +|+++|+.++|
T Consensus       158 ~l~l~g~~~~a  168 (258)
T PRK09076        158 RMILCGERVDA  168 (258)
T ss_pred             HHHHcCCcCCH
Confidence            99999999986

>COG1024 CaiD Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism]

Probab=100.00  E-value=3.1e-42  Score=298.51  Aligned_cols=168  Identities=35%  Similarity=0.539  Sum_probs=148.2

Q ss_pred             cceeEEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCcccccc-CCccc
Q 026342           67 EFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTR-DGYAD  145 (240)
Q Consensus        67 ~~~~v~~~~~~~~~v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~-~~~~~  145 (240)
                      .+..+.++.  +++|++|+||||+++|+||.+|+.+|.++++.++.|+++|+|||||.| ++||+|+|++.+.. .....
T Consensus         3 ~~~~~~~~~--~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vvltg~g-~~FsaG~Dl~~~~~~~~~~~   79 (257)
T COG1024           3 TYETILVER--EDGIAVITLNRPEKLNALNLEMLDELAEALDEAEADPDVRVVVLTGAG-KAFSAGADLKELLSPEDGNA   79 (257)
T ss_pred             CCCeeEEEe--eCCEEEEEecCcccccCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCC-CceecccCHHHHhcccchhH
Confidence            345677776  577999999999999999999999999999999999999999999999 89999999998764 11111


Q ss_pred             hhhhhhhhHHHHHHHHHcCCCcEEEEECchhchhhHHHhhhcCEEEEeCCcEEecccccccccCCCchHHHHHhhcCHHH
Q 026342          146 YENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVSTVQ  225 (240)
Q Consensus       146 ~~~~~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~a~f~~pe~~~Gl~p~~g~~~~l~rlvG~~~  225 (240)
                      .... ....+.++.++.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|..+
T Consensus        80 ~~~~-~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~eLal~~D~ria~~~a~f~~pe~~iGl~Pg~g~~~~l~r~~G~~~  158 (257)
T COG1024          80 AENL-MQPGQDLLRALADLPKPVIAAVNGYALGGGLELALACDIRIAAEDAKFGLPEVNLGLLPGDGGTQRLPRLLGRGR  158 (257)
T ss_pred             HHHH-HhHHHHHHHHHHhCCCCEEEEEcceEeechhhhhhcCCeEEecCCcEecCcccccccCCCCcHHHHHHHhcCHHH
Confidence            1111 113456788999999999999999999999999999999999999999999999999998789999999999999


Q ss_pred             HHHHHhcCCcccc
Q 026342          226 QCLWWGLKKHVKC  238 (240)
Q Consensus       226 a~ellltG~~i~A  238 (240)
                      |++|++||+.|+|
T Consensus       159 a~~l~ltg~~~~a  171 (257)
T COG1024         159 AKELLLTGEPISA  171 (257)
T ss_pred             HHHHHHcCCcCCH
Confidence            9999999999987

>PRK05809 3-hydroxybutyryl-CoA dehydratase; Validated

Probab=100.00  E-value=4.9e-42  Score=297.72  Aligned_cols=169  Identities=33%  Similarity=0.473  Sum_probs=149.1

Q ss_pred             cceeEEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccch
Q 026342           67 EFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADY  146 (240)
Q Consensus        67 ~~~~v~~~~~~~~~v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~  146 (240)
                      +|+.+.+++  +++|++|+||||++.|+||.+|+.+|.++++.++.|+++|+|||+|.|+++||+|+|++++........
T Consensus         2 ~~~~i~~~~--~~~v~~itlnrp~~~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~~F~aG~Dl~~~~~~~~~~~   79 (260)
T PRK05809          2 ELKNVILEK--EGHIAVVTINRPKALNALNSETLKELDTVLDDIENDDNVYAVILTGAGEKAFVAGADISEMKDLNEEEG   79 (260)
T ss_pred             CcceEEEEE--eCCEEEEEECCCcccCCCCHHHHHHHHHHHHHHhcCCCcEEEEEEcCCCCceeeCcChHhHhccChHHH
Confidence            356688887  789999999999999999999999999999999999999999999998679999999987643221111


Q ss_pred             hhhhhhhHHHHHHHHHcCCCcEEEEECchhchhhHHHhhhcCEEEEeCCcEEecccccccccCCCchHHHHHhhcCHHHH
Q 026342          147 ENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVSTVQQ  226 (240)
Q Consensus       147 ~~~~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~a~f~~pe~~~Gl~p~~g~~~~l~rlvG~~~a  226 (240)
                      ..+.. ...+++.+|.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|+.+++++|++++|..+|
T Consensus        80 ~~~~~-~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~va~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a  158 (260)
T PRK05809         80 RKFGL-LGNKVFRKLENLDKPVIAAINGFALGGGCELSMACDIRIASEKAKFGQPEVGLGITPGFGGTQRLARIVGPGKA  158 (260)
T ss_pred             HHHHH-HHHHHHHHHHcCCCCEEEEEcCeeecHHHHHHHhCCEEEeeCCCEEeCcccccCCCCCccHHHHHHHHhCHHHH
Confidence            11111 23467788999999999999999999999999999999999999999999999999999899999999999999


Q ss_pred             HHHHhcCCcccc
Q 026342          227 CLWWGLKKHVKC  238 (240)
Q Consensus       227 ~ellltG~~i~A  238 (240)
                      ++|+++|+.++|
T Consensus       159 ~~l~l~g~~~~a  170 (260)
T PRK05809        159 KELIYTGDMINA  170 (260)
T ss_pred             HHHHHhCCCCCH
Confidence            999999999986

>KOG1680 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]

Probab=100.00  E-value=6.7e-43  Score=296.42  Aligned_cols=158  Identities=36%  Similarity=0.558  Sum_probs=141.9

Q ss_pred             CCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccchhhhhhhhHHHH
Q 026342           78 GEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDL  157 (240)
Q Consensus        78 ~~~v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l  157 (240)
                      +++|+.|+||||+++|+|+..++.||.++|..+++|++++++||||.| +.||+|+||+++......+.....   +...
T Consensus        44 d~~I~lItlNRP~~~Nal~~~~m~eL~~A~~~~e~D~s~~viVltG~g-ksFcsG~Dl~e~~~~~~~~~~~~~---~~~~  119 (290)
T KOG1680|consen   44 DNGIALITLNRPKALNALCRATMLELAEAFKDFESDDSVGVIVLTGSG-KSFCSGADLKEMKKDEFQDVSDGI---FLRV  119 (290)
T ss_pred             CCCeEEEEeCChHHhccccHHHHHHHHHHHHHhhccCcccEEEEEcCC-CccccccCHHHHhhcccccccccc---ccch
Confidence            799999999999999999999999999999999999999999999999 899999999987654443322211   1122


Q ss_pred             HHHHHcCCCcEEEEECchhchhhHHHhhhcCEEEEeCCcEEecccccccccCCCchHHHHHhhcCHHHHHHHHhcCCccc
Q 026342          158 QVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVSTVQQCLWWGLKKHVK  237 (240)
Q Consensus       158 ~~~i~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~a~f~~pe~~~Gl~p~~g~~~~l~rlvG~~~a~ellltG~~i~  237 (240)
                      +..+.+.+||+||+|||+|+|||++|+++||+|||+++|+|++++.++|++|.+||+.+|+|.||..+|+||++||++++
T Consensus       120 ~~~~~~~~KPvIaainG~AlgGG~ELalmCDirva~~~Akfg~~~~~~Gi~p~~GGT~rl~r~vG~s~Ale~~ltg~~~~  199 (290)
T KOG1680|consen  120 WDLVSRLKKPVIAAINGFALGGGLELALMCDIRVAGEGAKFGFFEIRMGIIPSWGGTQRLPRIVGKSRALEMILTGRRLG  199 (290)
T ss_pred             hhhhhhcccceeEeeeceeeccchhhhhhcceEeccCCCeecccccccCCccCCCchhhHHHHhChHHHHHHHHhcCccc
Confidence            34455899999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             cC
Q 026342          238 CG  239 (240)
Q Consensus       238 A~  239 (240)
                      |.
T Consensus       200 Aq  201 (290)
T KOG1680|consen  200 AQ  201 (290)
T ss_pred             HH
Confidence            73

>PRK05980 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=4.4e-42  Score=298.05  Aligned_cols=166  Identities=28%  Similarity=0.417  Sum_probs=146.0

Q ss_pred             eEEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCc-cc---
Q 026342           70 DIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGY-AD---  145 (240)
Q Consensus        70 ~v~~~~~~~~~v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~-~~---  145 (240)
                      .|.++.  +++|++|+||||+++|+||.+|+.+|.++++.++.|+++|+|||+|.|+++||+|+|++++..... ..   
T Consensus         4 ~i~~~~--~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~   81 (260)
T PRK05980          4 TVLIEI--RDGIALLTLNRPEKLNALNYALIDRLLARLDAIEVDESVRAVILTGAGDRAFSAGADIHEFSASVAAGADVA   81 (260)
T ss_pred             eEEEEE--ECCEEEEEECCcccccCCCHHHHHHHHHHHHHHhhCCCcEEEEEEeCCCCceEcCcCHHHHhhhccccchhh
Confidence            477776  799999999999999999999999999999999999999999999998679999999987543211 01   


Q ss_pred             hhhhhhhhHHHHHHHHHcCCCcEEEEECchhchhhHHHhhhcCEEEEeCCcEEecccccccccCCCchHHHHHhhcCHHH
Q 026342          146 YENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVSTVQ  225 (240)
Q Consensus       146 ~~~~~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~a~f~~pe~~~Gl~p~~g~~~~l~rlvG~~~  225 (240)
                      ...+.. .+..++.++.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+|++|..+
T Consensus        82 ~~~~~~-~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~  160 (260)
T PRK05980         82 LRDFVR-RGQAMTARLEAFPKPVIAAVNGLAFGGGCEITEAVHLAIASERALFAKPEIRLGMPPTFGGTQRLPRLAGRKR  160 (260)
T ss_pred             HHHHHH-HHHHHHHHHHhCCCCEEEEEcCEEEhhhhHHhHhCCEEEecCCCEecCcccccCCCCCchHhhHHHhhcCHHH
Confidence            111111 2345677899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCcccc
Q 026342          226 QCLWWGLKKHVKC  238 (240)
Q Consensus       226 a~ellltG~~i~A  238 (240)
                      |++|+++|+.|+|
T Consensus       161 a~~l~l~g~~~~a  173 (260)
T PRK05980        161 ALELLLTGDAFSA  173 (260)
T ss_pred             HHHHHHcCCccCH
Confidence            9999999999986

>PRK07657 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=6.5e-42  Score=297.00  Aligned_cols=167  Identities=28%  Similarity=0.445  Sum_probs=147.0

Q ss_pred             eEEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccchhhh
Q 026342           70 DIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENF  149 (240)
Q Consensus        70 ~v~~~~~~~~~v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~~~~  149 (240)
                      .|.+++. +++|++|+||||++.|++|.+|+.+|.++++.++.|+++|+|||+|.|+++||+|+|++++...........
T Consensus         4 ~v~~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~   82 (260)
T PRK07657          4 NISVDYV-TPHVVKITLNRPRAANALSLALLEELQNILTQINEEANVRVVILTGAGEKAFCAGADLKERAGMNEEQVRHA   82 (260)
T ss_pred             eEEEEEc-cCCEEEEEEeCCcccCCCCHHHHHHHHHHHHHHHhCCCeEEEEEecCCCCceEcCcChHhhhcCChhhHHHH
Confidence            5777752 689999999999999999999999999999999999999999999999569999999987643221111111


Q ss_pred             hhhhHHHHHHHHHcCCCcEEEEECchhchhhHHHhhhcCEEEEeCCcEEecccccccccCCCchHHHHHhhcCHHHHHHH
Q 026342          150 GRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVSTVQQCLW  229 (240)
Q Consensus       150 ~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~a~f~~pe~~~Gl~p~~g~~~~l~rlvG~~~a~el  229 (240)
                      .. .+.+++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|+++++++|++++|..+|++|
T Consensus        83 ~~-~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~~~vG~~~a~~l  161 (260)
T PRK07657         83 VS-LIRTTMEMVEQLPQPVIAAINGIALGGGLELALACDFRIAAESASLGLTETTLAIIPGAGGTQRLPRLIGVGRAKEL  161 (260)
T ss_pred             HH-HHHHHHHHHHhCCCCEEEEEcCEeechHHHHHHhCCEEEeeCCCEEcCchhccCcCCCccHHHHHHHHhCHHHHHHH
Confidence            11 24567788999999999999999999999999999999999999999999999999999899999999999999999


Q ss_pred             HhcCCcccc
Q 026342          230 WGLKKHVKC  238 (240)
Q Consensus       230 lltG~~i~A  238 (240)
                      +++|++++|
T Consensus       162 ~l~g~~~~a  170 (260)
T PRK07657        162 IYTGRRISA  170 (260)
T ss_pred             HHhCCCCCH
Confidence            999999986

>PRK05862 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=7.7e-42  Score=296.07  Aligned_cols=165  Identities=32%  Similarity=0.488  Sum_probs=146.6

Q ss_pred             ceeEEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccchh
Q 026342           68 FTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYE  147 (240)
Q Consensus        68 ~~~v~~~~~~~~~v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~~  147 (240)
                      ++.+.+++  +++|++|+||||++.|++|.+|+.+|.+++++++.|+++|+|||+|.| ++||+|+|++++.....  .+
T Consensus         3 ~~~v~~~~--~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g-~~F~aG~Dl~~~~~~~~--~~   77 (257)
T PRK05862          3 YETILVET--RGRVGLITLNRPKALNALNDALMDELGAALAAFDADEGIGAIVITGSE-KAFAAGADIKEMADLSF--MD   77 (257)
T ss_pred             CceEEEEe--eCCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCeeEEEEECCC-CceECCcChHhHhccch--hH
Confidence            34578877  689999999999999999999999999999999999999999999999 79999999987643221  11


Q ss_pred             hhhhhhHHHHHHHHHcCCCcEEEEECchhchhhHHHhhhcCEEEEeCCcEEecccccccccCCCchHHHHHhhcCHHHHH
Q 026342          148 NFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVSTVQQC  227 (240)
Q Consensus       148 ~~~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~a~f~~pe~~~Gl~p~~g~~~~l~rlvG~~~a~  227 (240)
                      .... .+..++.+|.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+|++|..+|+
T Consensus        78 ~~~~-~~~~~~~~l~~~~kpvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~  156 (257)
T PRK05862         78 VYKG-DYITNWEKVARIRKPVIAAVAGYALGGGCELAMMCDIIIAADTAKFGQPEIKLGVLPGMGGSQRLTRAVGKAKAM  156 (257)
T ss_pred             HHHH-HHHHHHHHHHhCCCCEEEEEccEEeHHHHHHHHHCCEEEEeCCCEEeCchhccCcCCCccHHHHHHHHhCHHHHH
Confidence            1111 234467789999999999999999999999999999999999999999999999999998999999999999999


Q ss_pred             HHHhcCCcccc
Q 026342          228 LWWGLKKHVKC  238 (240)
Q Consensus       228 ellltG~~i~A  238 (240)
                      +|+++|+.++|
T Consensus       157 ~l~l~g~~~~a  167 (257)
T PRK05862        157 DLCLTGRMMDA  167 (257)
T ss_pred             HHHHhCCccCH
Confidence            99999999986

>PRK06143 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=5.8e-42  Score=296.71  Aligned_cols=166  Identities=28%  Similarity=0.410  Sum_probs=144.8

Q ss_pred             eEEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccchhhh
Q 026342           70 DIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENF  149 (240)
Q Consensus        70 ~v~~~~~~~~~v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~~~~  149 (240)
                      ++.+++. +++|++|+||||++.|+||.+|+.+|.++++.++.|+++|+|||||.|+++||+|+|++++..........+
T Consensus         7 ~~~~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~   85 (256)
T PRK06143          7 HAGVTRD-DRGVATLTIRNAGSLNILGTPVILALTQALRWLAADPDVRVLVLRGAGEKAFIGGADIKEMATLDQASAEAF   85 (256)
T ss_pred             cceeeec-CCCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhcCCCcEEEEEEeCCCCcccCCcCHHHHhhcChhhHHHH
Confidence            3566653 689999999999999999999999999999999999999999999998679999999987643221111111


Q ss_pred             hhhhHHHHHHHHHcCCCcEEEEECchhchhhHHHhhhcCEEEEeCCcEEecccccccccCCCchHHHHHhhcCHHHHHHH
Q 026342          150 GRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVSTVQQCLW  229 (240)
Q Consensus       150 ~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~a~f~~pe~~~Gl~p~~g~~~~l~rlvG~~~a~el  229 (240)
                      .. .+.+++..+.++||||||+|||+|+|||++|+++|||||++++++|++||+++|+ |+++++++|++++|..+|++|
T Consensus        86 ~~-~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~-p~~~~~~~l~~~iG~~~a~~l  163 (256)
T PRK06143         86 IS-RLRDLCDAVRHFPVPVIARIPGWCLGGGLELAAACDLRIAAHDAQFGMPEVRVGI-PSVIHAALLPRLIGWARTRWL  163 (256)
T ss_pred             HH-HHHHHHHHHHhCCCCEEEEECCEEeehhHHHHHhCCEEEecCCCEEeCCccccCC-CCccHHHHHHHhcCHHHHHHH
Confidence            11 3456778899999999999999999999999999999999999999999999997 777788999999999999999


Q ss_pred             HhcCCcccc
Q 026342          230 WGLKKHVKC  238 (240)
Q Consensus       230 lltG~~i~A  238 (240)
                      +++|+.|+|
T Consensus       164 ~l~g~~~~a  172 (256)
T PRK06143        164 LLTGETIDA  172 (256)
T ss_pred             HHcCCcCCH
Confidence            999999986

>PRK06142 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=6.2e-42  Score=298.94  Aligned_cols=169  Identities=23%  Similarity=0.313  Sum_probs=147.8

Q ss_pred             cceeEEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCc---
Q 026342           67 EFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGY---  143 (240)
Q Consensus        67 ~~~~v~~~~~~~~~v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~---  143 (240)
                      .++.|.+++  +++|++|+||||+++|++|.+|+.+|.++|++++.|+++|+|||+|.| ++||+|+|++++.....   
T Consensus         4 ~~~~v~~~~--~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVl~g~g-~~FcaG~Dl~~~~~~~~~~~   80 (272)
T PRK06142          4 TYESFTVEL--ADHVAQVTLNRPGKGNAMNPAFWSELPEIFRWLDADPEVRAVVLSGSG-KHFSYGIDLPAMAGVFGQLG   80 (272)
T ss_pred             CcceEEEEe--cCCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCC-CceecccCHHHHhhhccccc
Confidence            345688887  799999999999999999999999999999999999999999999999 79999999987643100   


Q ss_pred             -----cchhhhh--hhhHHHHHHHHHcCCCcEEEEECchhchhhHHHhhhcCEEEEeCCcEEecccccccccCCCchHHH
Q 026342          144 -----ADYENFG--RLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSI  216 (240)
Q Consensus       144 -----~~~~~~~--~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~a~f~~pe~~~Gl~p~~g~~~~  216 (240)
                           .......  ...+.+++..+..+||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|+.|++++
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kpvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~  160 (272)
T PRK06142         81 KDGLARPRTDLRREILRLQAAINAVADCRKPVIAAVQGWCIGGGVDLISACDMRYASADAKFSVREVDLGMVADVGSLQR  160 (272)
T ss_pred             ccccccchHHHHHHHHHHHHHHHHHHhCCCCEEEEecCccccchHHHHHhCCEEEecCCCeecchhhhhCCCCCchHHHH
Confidence                 0011111  112356778899999999999999999999999999999999999999999999999999989999


Q ss_pred             HHhhcCHHHHHHHHhcCCcccc
Q 026342          217 MSRLVSTVQQCLWWGLKKHVKC  238 (240)
Q Consensus       217 l~rlvG~~~a~ellltG~~i~A  238 (240)
                      |++++|..+|++|+++|+.|+|
T Consensus       161 l~~~~G~~~a~~l~l~g~~~~a  182 (272)
T PRK06142        161 LPRIIGDGHLRELALTGRDIDA  182 (272)
T ss_pred             HHHHhCHHHHHHHHHhCCCcCH
Confidence            9999999999999999999986

>PRK06563 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=5.8e-42  Score=296.51  Aligned_cols=164  Identities=24%  Similarity=0.284  Sum_probs=141.3

Q ss_pred             EEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccchhhhhh
Q 026342           72 IYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGR  151 (240)
Q Consensus        72 ~~~~~~~~~v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~~~~~~  151 (240)
                      .+++  +++|++|+||||++.|+||.+|+.+|.++++++++|+++|+|||+|.| ++||+|+|++++.............
T Consensus         2 ~~~~--~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vrvvvl~g~g-~~F~aG~Dl~~~~~~~~~~~~~~~~   78 (255)
T PRK06563          2 SRER--RGHVLLIGLDRPAKRNAFDSAMLDDLALALGEYEADDELRVAVLFAHG-EHFTAGLDLADVAPKLAAGGFPFPE   78 (255)
T ss_pred             eEEE--ECCEEEEEECCcccccCCCHHHHHHHHHHHHHHhhCCCcEEEEEECCC-CCCcCCcCHHHHhhccccchhhhhh
Confidence            4565  689999999999999999999999999999999999999999999999 7999999998764321111111111


Q ss_pred             hhHHHHHHHHHcCCCcEEEEECchhchhhHHHhhhcCEEEEeCCcEEecccccccccCCCchHHHHHhhcCHHHHHHHHh
Q 026342          152 LNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVSTVQQCLWWG  231 (240)
Q Consensus       152 ~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~a~f~~pe~~~Gl~p~~g~~~~l~rlvG~~~a~elll  231 (240)
                      .....+...+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|+++++++|++++|..+|++|++
T Consensus        79 ~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~l  158 (255)
T PRK06563         79 GGIDPWGTVGRRLSKPLVVAVQGYCLTLGIELMLAADIVVAADNTRFAQLEVQRGILPFGGATLRFPQAAGWGNAMRYLL  158 (255)
T ss_pred             hhhHHHHHHHhcCCCCEEEEEcCeeecHHHHHHHhCCEEEecCCCEEeChhhhcCCCCCccHHHHHHHHhhHHHHHHHHH
Confidence            11122233588999999999999999999999999999999999999999999999999988999999999999999999


Q ss_pred             cCCcccc
Q 026342          232 LKKHVKC  238 (240)
Q Consensus       232 tG~~i~A  238 (240)
                      +|+.|+|
T Consensus       159 tg~~~~a  165 (255)
T PRK06563        159 TGDEFDA  165 (255)
T ss_pred             cCCCcCH
Confidence            9999986

>PRK05870 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=6.3e-42  Score=295.36  Aligned_cols=165  Identities=29%  Similarity=0.401  Sum_probs=145.9

Q ss_pred             eEEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccchhhh
Q 026342           70 DIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENF  149 (240)
Q Consensus        70 ~v~~~~~~~~~v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~~~~  149 (240)
                      .|.+++  +++|++|+||||+++|+||.+|+.+|.++++.++.|+++|+|||+|.| ++||+|+|++++...........
T Consensus         4 ~i~~~~--~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g-~~F~aG~Dl~~~~~~~~~~~~~~   80 (249)
T PRK05870          4 PVLLDV--DDGVALITVNDPDRRNAVTAEMSAQLRAAVAAAEADPDVHALVVTGAG-KAFCAGADLTALGAAPGRPAEDG   80 (249)
T ss_pred             cEEEEc--cCCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCC-CCeecCcChHHHhcccccchHHH
Confidence            467776  799999999999999999999999999999999999999999999999 79999999997653221111111


Q ss_pred             hhhhHHHHHHHHHcCCCcEEEEECchhchhhHHHhhhcCEEEEeCCcEEecccccccccCCCchHHHHHhhcCHHHHHHH
Q 026342          150 GRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVSTVQQCLW  229 (240)
Q Consensus       150 ~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~a~f~~pe~~~Gl~p~~g~~~~l~rlvG~~~a~el  229 (240)
                      .. .+.+++..+.++||||||+|||+|+|||++|+++|||||++++++|++||+++|++|++|++++|++++|+++|++|
T Consensus        81 ~~-~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~~~~G~~~a~~l  159 (249)
T PRK05870         81 LR-RIYDGFLAVASCPLPTIAAVNGAAVGAGLNLALAADVRIAGPKALFDARFQKLGLHPGGGATWMLQRAVGPQVARAA  159 (249)
T ss_pred             HH-HHHHHHHHHHhCCCCEEEEECCEeEchhHHHHHhCCEEEEcCCCEEeCcccccCcCCCCcceeeHHhhhCHHHHHHH
Confidence            11 23456678999999999999999999999999999999999999999999999999999889999999999999999


Q ss_pred             HhcCCcccc
Q 026342          230 WGLKKHVKC  238 (240)
Q Consensus       230 lltG~~i~A  238 (240)
                      +++|+.++|
T Consensus       160 ~ltg~~~~a  168 (249)
T PRK05870        160 LLFGMRFDA  168 (249)
T ss_pred             HHhCCccCH
Confidence            999999986

>PRK06190 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.2e-41  Score=295.02  Aligned_cols=165  Identities=28%  Similarity=0.366  Sum_probs=147.3

Q ss_pred             ceeEEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccchh
Q 026342           68 FTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYE  147 (240)
Q Consensus        68 ~~~v~~~~~~~~~v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~~  147 (240)
                      ++.|.++.  +++|++|+||||++.|+||.+|+++|.+++++++.|+++|+|||+|.| ++||+|+|++++....... .
T Consensus         3 ~~~v~~~~--~~~va~Itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g-~~FcaG~Dl~~~~~~~~~~-~   78 (258)
T PRK06190          3 EPILLVET--HDRVRTLTLNRPEARNALSAALRRALFAALAEADADDDVDVVVLTGAD-PAFCAGLDLKELGGDGSAY-G   78 (258)
T ss_pred             CceEEEEe--eCCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCceEEEEECCC-CCccCCcCHHHHhcccchh-h
Confidence            34577777  799999999999999999999999999999999999999999999998 8999999999764321111 1


Q ss_pred             hhhhhhHHHHHHHHHcCCCcEEEEECchhchhhHHHhhhcCEEEEeCCcEEecccccccccCCCchHHHHHhhcCHHHHH
Q 026342          148 NFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVSTVQQC  227 (240)
Q Consensus       148 ~~~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~a~f~~pe~~~Gl~p~~g~~~~l~rlvG~~~a~  227 (240)
                      .  ...+.+++.++.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|+++++++|++++|+.+|+
T Consensus        79 ~--~~~~~~~~~~i~~~~kPvIAaV~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~  156 (258)
T PRK06190         79 A--QDALPNPSPAWPAMRKPVIGAINGAAVTGGLELALACDILIASERARFADTHARVGILPGWGLSVRLPQKVGIGRAR  156 (258)
T ss_pred             H--HHHHHHHHHHHHhCCCCEEEEECCEeecHHHHHHHhCCEEEEeCCCEEECcccccCcCCCccHHHHHHHHhCHHHHH
Confidence            1  11245677889999999999999999999999999999999999999999999999999998999999999999999


Q ss_pred             HHHhcCCcccc
Q 026342          228 LWWGLKKHVKC  238 (240)
Q Consensus       228 ellltG~~i~A  238 (240)
                      +|+++|++++|
T Consensus       157 ~l~ltg~~~~a  167 (258)
T PRK06190        157 RMSLTGDFLDA  167 (258)
T ss_pred             HHHHhCCccCH
Confidence            99999999986

>PRK06144 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1e-41  Score=296.15  Aligned_cols=169  Identities=26%  Similarity=0.329  Sum_probs=147.8

Q ss_pred             ceeEEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccchh
Q 026342           68 FTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYE  147 (240)
Q Consensus        68 ~~~v~~~~~~~~~v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~~  147 (240)
                      .+.|.++.  +++|++|+||||+++|+||.+|+++|.+++++++.|+++|+|||+|.|+++||+|+|++++.........
T Consensus         7 ~~~v~~~~--~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~   84 (262)
T PRK06144          7 TDELLLEV--RGGIARITFNRPAARNAMTWAMYEGLAEICEAIAADPSIRAVVLRGAGDKAFVAGTDIAQFRAFSTAEDA   84 (262)
T ss_pred             CCceEEEe--eCCEEEEEecCCcccCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCceecCcCHHHHhhccchhHH
Confidence            44578887  7999999999999999999999999999999999999999999999986799999999876432111111


Q ss_pred             hhhhhhHHHHHHHHHcCCCcEEEEECchhchhhHHHhhhcCEEEEeCCcEEeccccc-ccccCCCchHHHHHhhcCHHHH
Q 026342          148 NFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPK-VGSFDAGYGSSIMSRLVSTVQQ  226 (240)
Q Consensus       148 ~~~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~a~f~~pe~~-~Gl~p~~g~~~~l~rlvG~~~a  226 (240)
                      ......+.+++..+.++||||||+|||+|+|||++|+++||+|||+++++|++||++ +|++|+++++++|++++|.++|
T Consensus        85 ~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~~G~~p~~g~~~~l~~~vG~~~a  164 (262)
T PRK06144         85 VAYERRIDRVLGALEQLRVPTIAAIAGACVGGGAAIAAACDLRIATPSARFGFPIARTLGNCLSMSNLARLVALLGAARV  164 (262)
T ss_pred             HHHHHHHHHHHHHHHhCCCCEEEEECCeeeehHHHHHHhCCEEEecCCCEeechhHHhccCCCCccHHHHHHHHhCHHHH
Confidence            111112456778899999999999999999999999999999999999999999997 9999999999999999999999


Q ss_pred             HHHHhcCCcccc
Q 026342          227 CLWWGLKKHVKC  238 (240)
Q Consensus       227 ~ellltG~~i~A  238 (240)
                      ++++++|+.|+|
T Consensus       165 ~~l~l~g~~~~a  176 (262)
T PRK06144        165 KDMLFTARLLEA  176 (262)
T ss_pred             HHHHHcCCCcCH
Confidence            999999999986

>PRK09674 enoyl-CoA hydratase-isomerase; Provisional

Probab=100.00  E-value=1.3e-41  Score=294.47  Aligned_cols=164  Identities=26%  Similarity=0.447  Sum_probs=145.7

Q ss_pred             eeEEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccchhh
Q 026342           69 TDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYEN  148 (240)
Q Consensus        69 ~~v~~~~~~~~~v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~~~  148 (240)
                      ..|.+++  +++|++||||||++.|+||.+|+.+|.++++.++.|+++|+|||+|.| ++||+|+|++++.....  ...
T Consensus         2 ~~i~~~~--~~~v~~itlnrp~~~Nal~~~~~~~L~~~~~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~--~~~   76 (255)
T PRK09674          2 SELLVSR--QQRVLLLTLNRPEARNALNNALLTQLVNELEAAATDTSIGVCVITGNA-RFFAAGADLNEMAEKDL--AAT   76 (255)
T ss_pred             ceEEEEe--ECCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhhCCCcEEEEEECCC-CceecccChHhHhccch--hhh
Confidence            3467776  799999999999999999999999999999999999999999999999 89999999987643211  111


Q ss_pred             hhhhhHHHHHHHHHcCCCcEEEEECchhchhhHHHhhhcCEEEEeCCcEEecccccccccCCCchHHHHHhhcCHHHHHH
Q 026342          149 FGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVSTVQQCL  228 (240)
Q Consensus       149 ~~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~a~f~~pe~~~Gl~p~~g~~~~l~rlvG~~~a~e  228 (240)
                      . .....+++.++..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|+.+|++
T Consensus        77 ~-~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~ig~~~a~~  155 (255)
T PRK09674         77 L-NDPRPQLWQRLQAFNKPLIAAVNGYALGAGCELALLCDIVIAGENARFGLPEITLGIMPGAGGTQRLIRSVGKSLASQ  155 (255)
T ss_pred             H-HHHHHHHHHHHHhCCCCEEEEECCEeehHHHHHHHhCCEEEecCCCEEeCchhhcCCCCCccHHHHHHHHhCHHHHHH
Confidence            1 112345678899999999999999999999999999999999999999999999999999989999999999999999


Q ss_pred             HHhcCCcccc
Q 026342          229 WWGLKKHVKC  238 (240)
Q Consensus       229 llltG~~i~A  238 (240)
                      |+++|+.++|
T Consensus       156 l~l~g~~~~a  165 (255)
T PRK09674        156 MVLTGESITA  165 (255)
T ss_pred             HHHcCCccCH
Confidence            9999999986

>PRK07327 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.4e-41  Score=296.21  Aligned_cols=170  Identities=24%  Similarity=0.381  Sum_probs=148.7

Q ss_pred             CcceeEEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccc
Q 026342           66 TEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYAD  145 (240)
Q Consensus        66 ~~~~~v~~~~~~~~~v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~  145 (240)
                      ..|+.|.+++. +++|++|+||||++.|+++.+|+.+|.++|++++.|+++|+|||||.| ++||+|+|++++.......
T Consensus         8 ~~~~~i~~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~~~   85 (268)
T PRK07327          8 ADYPALRFDRP-PPGVLEIVLNGPGALNAADARMHRELADIWRDVDRDPDVRVVLIRGEG-KAFSAGGDLALVEEMADDF   85 (268)
T ss_pred             CCCCeEEEEec-CCCEEEEEEcCCCccCCCCHHHHHHHHHHHHHhhhCCCceEEEEECCC-CCcccccCHHHHhhccCcH
Confidence            35667888762 478999999999999999999999999999999999999999999999 8999999998764321111


Q ss_pred             --hhhhhhhhHHHHHHHHHcCCCcEEEEECchhchhhHHHhhhcCEEEEeCCcEEecccccccccCCCchHHHHHhhcCH
Q 026342          146 --YENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVST  223 (240)
Q Consensus       146 --~~~~~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~a~f~~pe~~~Gl~p~~g~~~~l~rlvG~  223 (240)
                        ...... ...+++..+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|.
T Consensus        86 ~~~~~~~~-~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~  164 (268)
T PRK07327         86 EVRARVWR-EARDLVYNVINCDKPIVSAIHGPAVGAGLVAALLADISIAAKDARIIDGHTRLGVAAGDHAAIVWPLLCGM  164 (268)
T ss_pred             HHHHHHHH-HHHHHHHHHHcCCCCEEEEEcCeeeehhhHHHHhCCEEEecCCCEEeCcccccCCCCCcchhhHHHHHhCH
Confidence              111111 23567788999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCcccc
Q 026342          224 VQQCLWWGLKKHVKC  238 (240)
Q Consensus       224 ~~a~ellltG~~i~A  238 (240)
                      .+|++|+++|++|+|
T Consensus       165 ~~a~~l~ltg~~~~a  179 (268)
T PRK07327        165 AKAKYYLLLCEPVSG  179 (268)
T ss_pred             HHHHHHHHcCCccCH
Confidence            999999999999986

>PRK08150 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.3e-41  Score=294.37  Aligned_cols=163  Identities=26%  Similarity=0.374  Sum_probs=143.7

Q ss_pred             eEEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccchhhh
Q 026342           70 DIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENF  149 (240)
Q Consensus        70 ~v~~~~~~~~~v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~~~~  149 (240)
                      .|.+++  +++|++|+||||++.|+||.+|+.+|.++++.++  +++|+|||||.| ++||+|+|++++...........
T Consensus         3 ~v~~~~--~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~--~~vr~vvltg~g-~~F~aG~Dl~~~~~~~~~~~~~~   77 (255)
T PRK08150          3 LVSYEL--DGGVATIGLNRPAKRNALNDGLIAALRAAFARLP--EGVRAVVLHGEG-DHFCAGLDLSELRERDAGEGMHH   77 (255)
T ss_pred             eEEEEe--eCCEEEEEEcCCccccCCCHHHHHHHHHHHHHhh--cCCeEEEEECCC-CceecCcCHHHHhhccchhHHHH
Confidence            467776  7899999999999999999999999999999997  789999999999 79999999997643221111111


Q ss_pred             hhhhHHHHHHHHHcCCCcEEEEECchhchhhHHHhhhcCEEEEeCCcEEecccccccccCCCchHHHHHhhcCHHHHHHH
Q 026342          150 GRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVSTVQQCLW  229 (240)
Q Consensus       150 ~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~a~f~~pe~~~Gl~p~~g~~~~l~rlvG~~~a~el  229 (240)
                      .. .+.+++.+|.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..+|++|
T Consensus        78 ~~-~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~~~a~~l  156 (255)
T PRK08150         78 SR-RWHRVFDKIQYGRVPVIAALHGAVVGGGLELASAAHIRVADESTYFALPEGQRGIFVGGGGSVRVPRLIGVARMTDM  156 (255)
T ss_pred             HH-HHHHHHHHHHhCCCCEEEEECCEEEcHHHHHHHhCCEEEEeCCCEEeccccccCCCCCccHHHHHHHHhCHHHHHHH
Confidence            11 24567788999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhcCCcccc
Q 026342          230 WGLKKHVKC  238 (240)
Q Consensus       230 lltG~~i~A  238 (240)
                      +++|+.|+|
T Consensus       157 ~ltg~~~~a  165 (255)
T PRK08150        157 MLTGRVYDA  165 (255)
T ss_pred             HHcCCcCCH
Confidence            999999986

>PRK07799 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.5e-41  Score=295.25  Aligned_cols=168  Identities=27%  Similarity=0.421  Sum_probs=144.7

Q ss_pred             cceeEEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccch
Q 026342           67 EFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADY  146 (240)
Q Consensus        67 ~~~~v~~~~~~~~~v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~  146 (240)
                      .++.+.+++  +++|++|+||||+++|++|.+|+++|.+++++++.|+++|+|||+|.| ++||+|+|++++........
T Consensus         3 ~~~~i~~~~--~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~~~~   79 (263)
T PRK07799          3 GGPHALVEQ--RGHTLIVTMNRPEARNALSTEMLRIMVDAWDRVDNDPDIRSCILTGAG-GAFCAGMDLKAATKKPPGDS   79 (263)
T ss_pred             CCceEEEEE--ECCEEEEEECCCcccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCC-CccccccCHHHHhhccccch
Confidence            345688887  789999999999999999999999999999999999999999999999 89999999997643221111


Q ss_pred             -h-h-hhhhhHHHHHHHHHcCCCcEEEEECchhchhhHHHhhhcCEEEEeCCcEEecccccccccCCCchHHHHHhhcCH
Q 026342          147 -E-N-FGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVST  223 (240)
Q Consensus       147 -~-~-~~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~a~f~~pe~~~Gl~p~~g~~~~l~rlvG~  223 (240)
                       . . +....+.. +.++..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|+++++++|+|++|.
T Consensus        80 ~~~~~~~~~~~~~-~~~~~~~~kpvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~  158 (263)
T PRK07799         80 FKDGSYDPSRIDA-LLKGRRLTKPLIAAVEGPAIAGGTEILQGTDIRVAGESAKFGISEAKWSLFPMGGSAVRLVRQIPY  158 (263)
T ss_pred             hhhhhhhhhHHHH-HHHHhcCCCCEEEEECCeEeccHHHHHHhCCEEEecCCCEecCcccccCcCCCccHHHHHHHHhCH
Confidence             0 0 00111222 335789999999999999999999999999999999999999999999999999889999999999


Q ss_pred             HHHHHHHhcCCcccc
Q 026342          224 VQQCLWWGLKKHVKC  238 (240)
Q Consensus       224 ~~a~ellltG~~i~A  238 (240)
                      .+|++|+++|+.|+|
T Consensus       159 ~~a~~l~ltg~~~~a  173 (263)
T PRK07799        159 TVACDLLLTGRHITA  173 (263)
T ss_pred             HHHHHHHHcCCCCCH
Confidence            999999999999986

>PLN02664 enoyl-CoA hydratase/delta3,5-delta2,4-dienoyl-CoA isomerase

Probab=100.00  E-value=1.7e-41  Score=296.58  Aligned_cols=168  Identities=23%  Similarity=0.309  Sum_probs=144.6

Q ss_pred             ceeEEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCcc---
Q 026342           68 FTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYA---  144 (240)
Q Consensus        68 ~~~v~~~~~~~~~v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~---  144 (240)
                      +..+.++.  +++|++|+||||+++|+||.+|+.+|.++++.++.|+++|+|||+|.| ++||+|+|++++......   
T Consensus         7 ~~~~~~~~--~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vrvvVltg~g-~~FcaG~Dl~~~~~~~~~~~~   83 (275)
T PLN02664          7 LEIIQKSP--NSSVFHLNLNRPSQRNALSLDFFTEFPKALSSLDQNPNVSVIILSGAG-DHFCSGIDLKTLNSISEQSSS   83 (275)
T ss_pred             eEEEEecC--CCCEEEEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCcEEEEEECCC-CceeeCcChHHhhhccccccc
Confidence            33344444  799999999999999999999999999999999999999999999999 799999999876431110   


Q ss_pred             -c----hhhhh--hhhHHHHHHHHHcCCCcEEEEECchhchhhHHHhhhcCEEEEeCCcEEecccccccccCCCchHHHH
Q 026342          145 -D----YENFG--RLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIM  217 (240)
Q Consensus       145 -~----~~~~~--~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~a~f~~pe~~~Gl~p~~g~~~~l  217 (240)
                       +    .....  ...+.+++..|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l  163 (275)
T PLN02664         84 GDRGRSGERLRRKIKFLQDAITAIEQCRKPVIAAIHGACIGGGVDIVTACDIRYCSEDAFFSVKEVDLAITADLGTLQRL  163 (275)
T ss_pred             ccchhhHHHHHHHHHHHHHHHHHHHhCCCCEEEEECCccccchHHHHHhCCEEEecCCCEeccHHHhhCCCCCccHHHHH
Confidence             0    01110  1123456778999999999999999999999999999999999999999999999999998889999


Q ss_pred             HhhcCHHHHHHHHhcCCcccc
Q 026342          218 SRLVSTVQQCLWWGLKKHVKC  238 (240)
Q Consensus       218 ~rlvG~~~a~ellltG~~i~A  238 (240)
                      ++++|.++|++|+++|+.|+|
T Consensus       164 ~~~vG~~~A~~l~ltg~~~~a  184 (275)
T PLN02664        164 PSIVGYGNAMELALTGRRFSG  184 (275)
T ss_pred             HHHhCHHHHHHHHHhCCCCCH
Confidence            999999999999999999986

>PRK07658 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.9e-41  Score=293.47  Aligned_cols=165  Identities=24%  Similarity=0.345  Sum_probs=145.5

Q ss_pred             eeEEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCcc-chh
Q 026342           69 TDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYA-DYE  147 (240)
Q Consensus        69 ~~v~~~~~~~~~v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~-~~~  147 (240)
                      +.+.+++  +++|++|+||||++ |+||.+|+.+|.++++.++.|+++|+|||+|.| ++||+|+|++++...... ...
T Consensus         2 ~~i~~~~--~~~v~~itl~rp~~-Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g-~~F~aG~Dl~~~~~~~~~~~~~   77 (257)
T PRK07658          2 KFLSVRV--EDHVAVITLNHPPA-NALSSQVLHELSELLDQVEKDDNVRVVVIHGEG-RFFSAGADIKEFTSVTEAEQAT   77 (257)
T ss_pred             ceEEEEe--eCCEEEEEECCCCC-CCCCHHHHHHHHHHHHHHHhCCCceEEEEECCC-CceEeCcCHHHHhccCchhhHH
Confidence            3577777  79999999999985 999999999999999999999999999999999 799999999876432211 111


Q ss_pred             hhhhhhHHHHHHHHHcCCCcEEEEECchhchhhHHHhhhcCEEEEeCCcEEecccccccccCCCchHHHHHhhcCHHHHH
Q 026342          148 NFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVSTVQQC  227 (240)
Q Consensus       148 ~~~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~a~f~~pe~~~Gl~p~~g~~~~l~rlvG~~~a~  227 (240)
                      .... ....++.++.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|+++++++|++++|..+|+
T Consensus        78 ~~~~-~~~~~~~~l~~~~kpvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~  156 (257)
T PRK07658         78 ELAQ-LGQVTFERVEKFSKPVIAAIHGAALGGGLELAMSCHIRFATESAKLGLPELNLGLIPGFAGTQRLPRYVGKAKAL  156 (257)
T ss_pred             HHHH-HHHHHHHHHHhCCCCEEEEEcCeeeeHHHHHHHhCCEEEecCCCcccCcccccCCCCCCcHHHHHHHHhCHHHHH
Confidence            1111 235677889999999999999999999999999999999999999999999999999998999999999999999


Q ss_pred             HHHhcCCcccc
Q 026342          228 LWWGLKKHVKC  238 (240)
Q Consensus       228 ellltG~~i~A  238 (240)
                      +|+++|+.++|
T Consensus       157 ~l~l~g~~~~a  167 (257)
T PRK07658        157 EMMLTSEPITG  167 (257)
T ss_pred             HHHHcCCCcCH
Confidence            99999999986

>PRK07659 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=2.3e-41  Score=293.63  Aligned_cols=167  Identities=22%  Similarity=0.357  Sum_probs=147.3

Q ss_pred             cceeEEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCcc-c
Q 026342           67 EFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYA-D  145 (240)
Q Consensus        67 ~~~~v~~~~~~~~~v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~-~  145 (240)
                      +++.|.++.  +++|++|+||||++.|++|.+|+.+|.++++.+ .|+++|+|||+|.| ++||+|+|++++...... .
T Consensus         4 ~~~~v~~~~--~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~-~d~~vrvvvl~g~g-~~F~aG~Dl~~~~~~~~~~~   79 (260)
T PRK07659          4 KMESVVVKY--EGRVATIMLNRPEALNALDEPMLKELLQALKEV-AESSAHIVVLRGNG-RGFSAGGDIKMMLSSNDESK   79 (260)
T ss_pred             CCceEEEEe--eCCEEEEEeCCcccccCCCHHHHHHHHHHHHHh-cCCCeeEEEEECCC-CCcccccCHHHHhhccCchh
Confidence            445688887  799999999999999999999999999999999 58899999999999 799999999976432111 1


Q ss_pred             hhhhhhhhHHHHHHHHHcCCCcEEEEECchhchhhHHHhhhcCEEEEeCCcEEecccccccccCCCchHHHHHhhcCHHH
Q 026342          146 YENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVSTVQ  225 (240)
Q Consensus       146 ~~~~~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~a~f~~pe~~~Gl~p~~g~~~~l~rlvG~~~  225 (240)
                      ..... ..+.+++.++..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|+.+
T Consensus        80 ~~~~~-~~~~~~~~~l~~~~~pvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~~~vg~~~  158 (260)
T PRK07659         80 FDGVM-NTISEIVVTLYTMPKLTISAIHGPAAGLGLSIALTADYVIADISAKLAMNFIGIGLIPDGGGHFFLQKRVGENK  158 (260)
T ss_pred             HHHHH-HHHHHHHHHHHhCCCCEEEEecCceecHHHHHHHhCCEEEEcCCCEEcCchhhcCCCCCCchhhhHHHhcCHHH
Confidence            11111 13456778899999999999999999999999999999999999999999999999999989999999999999


Q ss_pred             HHHHHhcCCcccc
Q 026342          226 QCLWWGLKKHVKC  238 (240)
Q Consensus       226 a~ellltG~~i~A  238 (240)
                      |++|+++|+.|+|
T Consensus       159 a~~l~ltg~~~~a  171 (260)
T PRK07659        159 AKQIIWEGKKLSA  171 (260)
T ss_pred             HHHHHHhCCccCH
Confidence            9999999999987

>PLN02600 enoyl-CoA hydratase

Probab=100.00  E-value=1.8e-41  Score=292.83  Aligned_cols=160  Identities=26%  Similarity=0.451  Sum_probs=142.0

Q ss_pred             CCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccchhhhhhhhHHHH
Q 026342           78 GEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDL  157 (240)
Q Consensus        78 ~~~v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l  157 (240)
                      +++|++||||||+++|+||.+|+.+|.+++++++.|+++|+|||+|.|+++||+|+|++++..........+.. .+..+
T Consensus         2 ~~~v~~itlnrp~~~Nal~~~~~~~l~~~~~~~~~d~~vr~vVl~g~~g~~F~aG~Dl~~~~~~~~~~~~~~~~-~~~~~   80 (251)
T PLN02600          2 DSGIVELRLDRPEAKNAIGKEMLRGLRSAFEKIQADASARVVMLRSSVPGVFCAGADLKERRKMSPSEVQKFVN-SLRST   80 (251)
T ss_pred             CCcEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCceEEEEecCCCCceeeCcCHHHHhccChHHHHHHHH-HHHHH
Confidence            57999999999999999999999999999999999999999999998557999999998764322111111221 24566


Q ss_pred             HHHHHcCCCcEEEEECchhchhhHHHhhhcCEEEEeCCcEEecccccccccCCCchHHHHHhhcCHHHHHHHHhcCCccc
Q 026342          158 QVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVSTVQQCLWWGLKKHVK  237 (240)
Q Consensus       158 ~~~i~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~a~f~~pe~~~Gl~p~~g~~~~l~rlvG~~~a~ellltG~~i~  237 (240)
                      +.++.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..+|++|+++|+.++
T Consensus        81 ~~~l~~~~kPvIAav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~G~~~a~~l~ltg~~~~  160 (251)
T PLN02600         81 FSSLEALSIPTIAVVEGAALGGGLELALSCDLRICGEEAVFGLPETGLAIIPGAGGTQRLPRLVGRSRAKELIFTGRRIG  160 (251)
T ss_pred             HHHHHhCCCCEEEEecCeecchhHHHHHhCCEEEeeCCCEEeCcccccCcCCCchHHHHHHHHhCHHHHHHHHHhCCccC
Confidence            77899999999999999999999999999999999999999999999999999989999999999999999999999998


Q ss_pred             c
Q 026342          238 C  238 (240)
Q Consensus       238 A  238 (240)
                      |
T Consensus       161 a  161 (251)
T PLN02600        161 A  161 (251)
T ss_pred             H
Confidence            6

>PRK08140 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=3e-41  Score=293.06  Aligned_cols=167  Identities=32%  Similarity=0.459  Sum_probs=145.5

Q ss_pred             ceeEEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCc---c
Q 026342           68 FTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGY---A  144 (240)
Q Consensus        68 ~~~v~~~~~~~~~v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~---~  144 (240)
                      |+.|.++.  +++|++|+||||++.|+||.+|+.+|.+++++++ |+++|+|||+|.| ++||+|+|++++.....   .
T Consensus         3 ~~~i~~~~--~~~v~~itlnrp~~~Nal~~~~~~~l~~~~~~~~-d~~v~~vVl~g~g-~~F~aG~Dl~~~~~~~~~~~~   78 (262)
T PRK08140          3 YETILLAI--EAGVATLTLNRPDKLNSFTREMHRELREALDQVE-DDGARALLLTGAG-RGFCAGQDLADRDVTPGGAMP   78 (262)
T ss_pred             CceEEEEe--ECCEEEEEecCCcccCCCCHHHHHHHHHHHHHhc-CCCceEEEEECCC-CCcccCcChHHHhccccccch
Confidence            45678887  7899999999999999999999999999999999 9999999999999 79999999987642211   0


Q ss_pred             chhhhhhhhHHHHHHHHHcCCCcEEEEECchhchhhHHHhhhcCEEEEeCCcEEecccccccccCCCchHHHHHhhcCHH
Q 026342          145 DYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVSTV  224 (240)
Q Consensus       145 ~~~~~~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~a~f~~pe~~~Gl~p~~g~~~~l~rlvG~~  224 (240)
                      .........+..++.++.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|+++++++|++++|..
T Consensus        79 ~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~~~vG~~  158 (262)
T PRK08140         79 DLGESIETFYNPLVRRLRALPLPVIAAVNGVAAGAGANLALACDIVLAARSASFIQAFVKIGLVPDSGGTWFLPRLVGMA  158 (262)
T ss_pred             hhHHHHHHHHHHHHHHHHhCCCCEEEEECCeeehhHHHHHHhCCEEEecCCCEEeccccccCCCCCccHHHHHHHHhCHH
Confidence            10111111123467789999999999999999999999999999999999999999999999999998999999999999


Q ss_pred             HHHHHHhcCCcccc
Q 026342          225 QQCLWWGLKKHVKC  238 (240)
Q Consensus       225 ~a~ellltG~~i~A  238 (240)
                      +|++|+++|+.|+|
T Consensus       159 ~a~~l~l~g~~~~a  172 (262)
T PRK08140        159 RALGLALLGEKLSA  172 (262)
T ss_pred             HHHHHHHcCCCcCH
Confidence            99999999999986

>PRK05995 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=2.9e-41  Score=293.19  Aligned_cols=167  Identities=32%  Similarity=0.495  Sum_probs=144.7

Q ss_pred             ceeEEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCc-cch
Q 026342           68 FTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGY-ADY  146 (240)
Q Consensus        68 ~~~v~~~~~~~~~v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~-~~~  146 (240)
                      |+.+.++.  +++|++||||||++.|+||.+|+.+|.++++.++.|+++|+|||||.| ++||+|+|++++..... ...
T Consensus         3 ~~~i~~~~--~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~~~~~   79 (262)
T PRK05995          3 YETLEIEQ--RGQVATVTLNRPDVRNAFNETVIAELTAAFRALDADDSVRAVVLAGAG-KAFCAGADLNWMKKMAGYSDD   79 (262)
T ss_pred             CceEEEEe--eCCEEEEEEcCcccccCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCC-CccccCcCHHHHhhhcccCch
Confidence            55688887  799999999999999999999999999999999999999999999999 89999999987632111 111


Q ss_pred             hhh-hhhhHHHHHHHHHcCCCcEEEEECchhchhhHHHhhhcCEEEEeCCcEEecccccccccCCCchHHHHHhhcCHHH
Q 026342          147 ENF-GRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVSTVQ  225 (240)
Q Consensus       147 ~~~-~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~a~f~~pe~~~Gl~p~~g~~~~l~rlvG~~~  225 (240)
                      ... ....+.+++.++.++|||+||+|||+|+|||++|+++|||||++++++|++||+++|++|++++ .+|++++|.++
T Consensus        80 ~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~-~~l~~~vg~~~  158 (262)
T PRK05995         80 ENRADARRLADMLRAIYRCPKPVIARVHGDAYAGGMGLVAACDIAVAADHAVFCLSEVRLGLIPATIS-PYVIRAMGERA  158 (262)
T ss_pred             hhhhHHHHHHHHHHHHHcCCCCEEEEECCEEEhhHHHHHHhCCEEEeeCCCEEeCcccccccCccchH-HHHHHHhCHHH
Confidence            111 1113456788899999999999999999999999999999999999999999999999997754 56899999999


Q ss_pred             HHHHHhcCCcccc
Q 026342          226 QCLWWGLKKHVKC  238 (240)
Q Consensus       226 a~ellltG~~i~A  238 (240)
                      |++|+++|+.|+|
T Consensus       159 a~~l~l~g~~~~a  171 (262)
T PRK05995        159 ARRYFLTAERFDA  171 (262)
T ss_pred             HHHHHHcCCccCH
Confidence            9999999999986

>PRK06494 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=2.8e-41  Score=292.89  Aligned_cols=166  Identities=30%  Similarity=0.377  Sum_probs=144.2

Q ss_pred             cceeEEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccch
Q 026342           67 EFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADY  146 (240)
Q Consensus        67 ~~~~v~~~~~~~~~v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~  146 (240)
                      +++.|.+++  +++|++|+||||++.|++|.+|+.+|.++++.++.|+++|+|||+|.|+++||+|+|++++....... 
T Consensus         2 ~~~~v~~~~--~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~~~~~~~~-   78 (259)
T PRK06494          2 ALPFSTVER--KGHVTIVTLNRPEVMNALHLDAHFELEEVFDDFAADPEQWVAIVTGAGDKAFSAGNDLKEQAAGGKRG-   78 (259)
T ss_pred             CCceeEEEe--ECCEEEEEEcCccccCCCCHHHHHHHHHHHHHHhhCCCcEEEEEEcCCCCceeccccHHhHhhcCcch-
Confidence            345678887  78999999999999999999999999999999999999999999999867999999998754321111 


Q ss_pred             hhhhhhhHHHHHHHHHcCCCcEEEEECchhchhhHHHhhhcCEEEEeCCcEEecccccccccCCCchHHHHHhhcCHHHH
Q 026342          147 ENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVSTVQQ  226 (240)
Q Consensus       147 ~~~~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~a~f~~pe~~~Gl~p~~g~~~~l~rlvG~~~a  226 (240)
                      ... . .+..+ ..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|+.+|
T Consensus        79 ~~~-~-~~~~~-~~~~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a  155 (259)
T PRK06494         79 WPE-S-GFGGL-TSRFDLDKPIIAAVNGVAMGGGFELALACDLIVAAENATFALPEPRVGLAALAGGLHRLPRQIGLKRA  155 (259)
T ss_pred             hhh-H-HHHHH-HHHhcCCCCEEEEECCEEecHHHHHHHhCCEEEEeCCCEEeCcccccCCCCCchHHHHHHHHcCHHHH
Confidence            101 1 12233 34568999999999999999999999999999999999999999999999999899999999999999


Q ss_pred             HHHHhcCCcccc
Q 026342          227 CLWWGLKKHVKC  238 (240)
Q Consensus       227 ~ellltG~~i~A  238 (240)
                      ++|+++|+.|+|
T Consensus       156 ~~lll~g~~~~a  167 (259)
T PRK06494        156 MGMILTGRRVTA  167 (259)
T ss_pred             HHHHHcCCcCCH
Confidence            999999999986

>PRK08260 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=2.8e-41  Score=298.16  Aligned_cols=168  Identities=33%  Similarity=0.475  Sum_probs=146.5

Q ss_pred             ceeEEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccC-Cc---
Q 026342           68 FTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRD-GY---  143 (240)
Q Consensus        68 ~~~v~~~~~~~~~v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~-~~---  143 (240)
                      |+.|.+++  +++|++|+||||++.|+||.+|+.+|.++|+.++.|+++|+|||+|.| ++||+|+|++++... ..   
T Consensus         3 ~~~v~~~~--~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~~~~~   79 (296)
T PRK08260          3 YETIRYDV--ADGIATITLNRPDKLNAFTVTMARELIEAFDAADADDAVRAVIVTGAG-RAFCAGADLSAGGNTFDLDAP   79 (296)
T ss_pred             cceEEEee--eCCEEEEEeCCCcccCCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCC-CCeecCcChHHhhhccccccc
Confidence            45688887  799999999999999999999999999999999999999999999999 899999999875320 00   


Q ss_pred             ----------c-c-hhhhhhhhHHHHHHHHHcCCCcEEEEECchhchhhHHHhhhcCEEEEeCCcEEecccccccccCCC
Q 026342          144 ----------A-D-YENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAG  211 (240)
Q Consensus       144 ----------~-~-~~~~~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~a~f~~pe~~~Gl~p~~  211 (240)
                                . . ..........+++.++..+||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pkPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~  159 (296)
T PRK08260         80 RTPVEADEEDRADPSDDGVRDGGGRVTLRIFDSLKPVIAAVNGPAVGVGATMTLAMDIRLASTAARFGFVFGRRGIVPEA  159 (296)
T ss_pred             ccccccccccccchhHHHHHHHHHHHHHHHHhCCCCEEEEECCeeehHhHHHHHhCCEEEeeCCCEEecchhhcCcCCCc
Confidence                      0 0 000111113456778999999999999999999999999999999999999999999999999999


Q ss_pred             chHHHHHhhcCHHHHHHHHhcCCcccc
Q 026342          212 YGSSIMSRLVSTVQQCLWWGLKKHVKC  238 (240)
Q Consensus       212 g~~~~l~rlvG~~~a~ellltG~~i~A  238 (240)
                      +++++|++++|..+|++|+++|+.|+|
T Consensus       160 g~~~~l~r~vG~~~A~~llltg~~~~a  186 (296)
T PRK08260        160 ASSWFLPRLVGLQTALEWVYSGRVFDA  186 (296)
T ss_pred             chhhhHHHhhCHHHHHHHHHcCCccCH
Confidence            999999999999999999999999986

>PRK08138 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=3.8e-41  Score=292.33  Aligned_cols=165  Identities=31%  Similarity=0.473  Sum_probs=146.1

Q ss_pred             eeEEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccchhh
Q 026342           69 TDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYEN  148 (240)
Q Consensus        69 ~~v~~~~~~~~~v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~~~  148 (240)
                      +.+.++.. +++|++|+||||+++|+||.+|+.+|.++++.+++|+++|+|||+|.| ++||+|+|++++....  ....
T Consensus         7 ~~~~~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vvl~g~g-~~F~aG~Dl~~~~~~~--~~~~   82 (261)
T PRK08138          7 DVVLLERP-ADGVALLRLNRPEARNALNMEVRQQLAEHFTELSEDPDIRAIVLTGGE-KVFAAGADIKEFATAG--AIEM   82 (261)
T ss_pred             CCEEEEEc-cCCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCeeEEEEECCC-CCeeCCcCHHHHhccc--hhHH
Confidence            44667653 689999999999999999999999999999999999999999999998 7999999998764321  1111


Q ss_pred             hhhhhHHHHHHHHHcCCCcEEEEECchhchhhHHHhhhcCEEEEeCCcEEecccccccccCCCchHHHHHhhcCHHHHHH
Q 026342          149 FGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVSTVQQCL  228 (240)
Q Consensus       149 ~~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~a~f~~pe~~~Gl~p~~g~~~~l~rlvG~~~a~e  228 (240)
                      ... ...+++..+.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..+|++
T Consensus        83 ~~~-~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~  161 (261)
T PRK08138         83 YLR-HTERYWEAIAQCPKPVIAAVNGYALGGGCELAMHADIIVAGESASFGQPEIKVGLMPGAGGTQRLVRAVGKFKAMR  161 (261)
T ss_pred             HHH-HHHHHHHHHHhCCCCEEEEEccEEEcHHHHHHHhCCEEEecCCCEeeCcccccccCCCCcHHHHHHHHhCHHHHHH
Confidence            111 2456778899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhcCCcccc
Q 026342          229 WWGLKKHVKC  238 (240)
Q Consensus       229 llltG~~i~A  238 (240)
                      |+++|+.++|
T Consensus       162 l~l~g~~~~a  171 (261)
T PRK08138        162 MALTGCMVPA  171 (261)
T ss_pred             HHHcCCCCCH
Confidence            9999999986

>PRK06127 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=3e-41  Score=294.24  Aligned_cols=166  Identities=28%  Similarity=0.459  Sum_probs=146.5

Q ss_pred             eEEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCcc-ch-h
Q 026342           70 DIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYA-DY-E  147 (240)
Q Consensus        70 ~v~~~~~~~~~v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~-~~-~  147 (240)
                      .|.+++  +++|++|+||||+++|+||.+|+.+|.++++.++.|+++++|||+|.|+++||+|+|++++...... .. .
T Consensus        12 ~v~~~~--~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~   89 (269)
T PRK06127         12 KLLAEK--TGGLGRITFNNPARHNAMSLDMWEALPQALAAAEDDDAIRVVVLTGAGEKAFVSGADISQFEESRSDAEAVA   89 (269)
T ss_pred             ceEEEE--ECCEEEEEecCCCccCCCCHHHHHHHHHHHHHHHhCCCcEEEEEEeCCCCceecCcCHHHHhhcccchHHHH
Confidence            377777  6899999999999999999999999999999999999999999999986799999999876432111 11 1


Q ss_pred             hhhhhhHHHHHHHHHcCCCcEEEEECchhchhhHHHhhhcCEEEEeCCcEEecccccccccCCCchHHHHHhhcCHHHHH
Q 026342          148 NFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVSTVQQC  227 (240)
Q Consensus       148 ~~~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~a~f~~pe~~~Gl~p~~g~~~~l~rlvG~~~a~  227 (240)
                      .+.. ....++.+|.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|+++++++|++++|..+|+
T Consensus        90 ~~~~-~~~~~~~~i~~~~kPvIaav~G~a~GgG~~LalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~  168 (269)
T PRK06127         90 AYEQ-AVEAAQAALADYAKPTIACIRGYCIGGGMGIALACDIRIAAEDSRFGIPAARLGLGYGYDGVKNLVDLVGPSAAK  168 (269)
T ss_pred             HHHH-HHHHHHHHHHhCCCCEEEEECCEEecHHHHHHHhCCEEEeeCCCEeeCchhhhCCCCCccHHHHHHHHhCHHHHH
Confidence            1111 234567889999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCcccc
Q 026342          228 LWWGLKKHVKC  238 (240)
Q Consensus       228 ellltG~~i~A  238 (240)
                      +|+++|+.|+|
T Consensus       169 ~l~ltg~~~~a  179 (269)
T PRK06127        169 DLFYTARRFDA  179 (269)
T ss_pred             HHHHcCCCCCH
Confidence            99999999986

>PRK05674 gamma-carboxygeranoyl-CoA hydratase; Validated

Probab=100.00  E-value=2.2e-41  Score=294.42  Aligned_cols=169  Identities=26%  Similarity=0.405  Sum_probs=144.9

Q ss_pred             cceeEEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccc-
Q 026342           67 EFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYAD-  145 (240)
Q Consensus        67 ~~~~v~~~~~~~~~v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~-  145 (240)
                      +|+++.++++ +++|++|+||||+++|+||.+|+.+|.++++.++.|+++|+|||+|.| ++||+|+|++++....... 
T Consensus         3 ~~~~l~~~~~-~~~v~~itlnrp~~~Nal~~~~~~el~~al~~~~~d~~vr~vVl~g~g-~~F~aG~Dl~~~~~~~~~~~   80 (265)
T PRK05674          3 DFQTIELIRD-PRGFATLWLSRADKNNAFNAQMIRELILALDQVQSDASLRFLLLRGRG-RHFSAGADLAWMQQSADLDY   80 (265)
T ss_pred             CcceEEEEEc-CCCEEEEEecCcccccCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCC-CCcccCcCHHHHhhcccccc
Confidence            3677888873 378999999999999999999999999999999999999999999999 8999999998754211100 


Q ss_pred             -hhhhhhhhHHHHHHHHHcCCCcEEEEECchhchhhHHHhhhcCEEEEeCCcEEecccccccccCCCchHHHHHhhcCHH
Q 026342          146 -YENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVSTV  224 (240)
Q Consensus       146 -~~~~~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~a~f~~pe~~~Gl~p~~g~~~~l~rlvG~~  224 (240)
                       ........+.+++..+.++||||||+|||+|+|||++|+++||||||+++++|++||+++|++|+++ +.++++++|.+
T Consensus        81 ~~~~~~~~~~~~~~~~l~~~~kPvIaaV~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gi~p~~~-~~~l~~~vG~~  159 (265)
T PRK05674         81 NTNLDDARELAELMYNLYRLKIPTLAVVQGAAFGGALGLISCCDMAIGADDAQFCLSEVRIGLAPAVI-SPFVVKAIGER  159 (265)
T ss_pred             hhhhHHHHHHHHHHHHHHcCCCCEEEEEcCEEEechhhHhhhcCEEEEeCCCEEeCcccccCCCcchh-HHHHHHHhCHH
Confidence             0000111245677889999999999999999999999999999999999999999999999999764 45699999999


Q ss_pred             HHHHHHhcCCcccc
Q 026342          225 QQCLWWGLKKHVKC  238 (240)
Q Consensus       225 ~a~ellltG~~i~A  238 (240)
                      +|++|+++|+.|+|
T Consensus       160 ~a~~l~ltg~~~~a  173 (265)
T PRK05674        160 AARRYALTAERFDG  173 (265)
T ss_pred             HHHHHHHhCcccCH
Confidence            99999999999986

>PRK06023 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=3.1e-41  Score=291.34  Aligned_cols=164  Identities=23%  Similarity=0.420  Sum_probs=144.8

Q ss_pred             eEEEEEEeCC---CEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccch
Q 026342           70 DIIYEKAVGE---GIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADY  146 (240)
Q Consensus        70 ~v~~~~~~~~---~v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~  146 (240)
                      .|.+++  ++   +|++|+||||+++|+||.+|+++|.++|+.+++|+++|+|||+|.| ++||+|+|++++....... 
T Consensus         4 ~i~~~~--~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~vr~vVl~g~g-~~FcaG~Dl~~~~~~~~~~-   79 (251)
T PRK06023          4 HILVER--PGAHPGVQVIRFNRPEKKNAITRAMYATMAKALKAADADDAIRAHVFLGTE-GCFSAGNDMQDFLAAAMGG-   79 (251)
T ss_pred             eEEEEe--ecCcCcEEEEEecCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCC-CCeecCcCHHHHhhccccc-
Confidence            477776  44   5999999999999999999999999999999999999999999998 7999999998764321111 


Q ss_pred             hhhhhhhHHHHHHHHHcCCCcEEEEECchhchhhHHHhhhcCEEEEeCCcEEecccccccccCCCchHHHHHhhcCHHHH
Q 026342          147 ENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVSTVQQ  226 (240)
Q Consensus       147 ~~~~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~a~f~~pe~~~Gl~p~~g~~~~l~rlvG~~~a  226 (240)
                      ..+.. .+.+++..|.++||||||+|||+|+|||++|+++||||||+++++|++||+++|++|++++++++++++|..+|
T Consensus        80 ~~~~~-~~~~~~~~l~~~~kPvIAav~G~a~GgG~~la~acD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~~a  158 (251)
T PRK06023         80 TSFGS-EILDFLIALAEAEKPIVSGVDGLAIGIGTTIHLHCDLTFASPRSLFRTPFVDLALVPEAGSSLLAPRLMGHQRA  158 (251)
T ss_pred             hhhHH-HHHHHHHHHHhCCCCEEEEeCCceecHHHHHHHhCCEEEEeCCCEecCcccccCCCCCchHHHHHHHHHhHHHH
Confidence            11111 24567788999999999999999999999999999999999999999999999999999899999999999999


Q ss_pred             HHHHhcCCcccc
Q 026342          227 CLWWGLKKHVKC  238 (240)
Q Consensus       227 ~ellltG~~i~A  238 (240)
                      ++|+++|+.++|
T Consensus       159 ~~l~l~g~~~~a  170 (251)
T PRK06023        159 FALLALGEGFSA  170 (251)
T ss_pred             HHHHHhCCCCCH
Confidence            999999999986

>TIGR02280 PaaB1 phenylacetate degradation probable enoyl-CoA hydratase paaB

Probab=100.00  E-value=3.2e-41  Score=292.02  Aligned_cols=163  Identities=29%  Similarity=0.437  Sum_probs=142.5

Q ss_pred             EEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccchh--hh
Q 026342           72 IYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYE--NF  149 (240)
Q Consensus        72 ~~~~~~~~~v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~~--~~  149 (240)
                      .+++  +++|++|+||||++.|+||.+|+.+|.++++++++|+ +|+|||+|.| ++||+|+|++++.........  ..
T Consensus         2 ~~e~--~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~-v~~vVltg~g-~~F~aG~Dl~~~~~~~~~~~~~~~~   77 (256)
T TIGR02280         2 LSAL--EAGVARLTLNRPDKLNSFTAEMHLELREALERVERDD-ARALMLTGAG-RGFCAGQDLSERNPTPGGAPDLGRT   77 (256)
T ss_pred             eEEE--ECCEEEEEecCcccccCCCHHHHHHHHHHHHHHhcCC-cEEEEEECCC-CCcccCcCHHHHhhccccchhHHHH
Confidence            4566  6999999999999999999999999999999999999 9999999999 799999999976432111111  11


Q ss_pred             hhhhHHHHHHHHHcCCCcEEEEECchhchhhHHHhhhcCEEEEeCCcEEecccccccccCCCchHHHHHhhcCHHHHHHH
Q 026342          150 GRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVSTVQQCLW  229 (240)
Q Consensus       150 ~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~a~f~~pe~~~Gl~p~~g~~~~l~rlvG~~~a~el  229 (240)
                      ....+..++.++..+||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|+++++++|++++|+.+|++|
T Consensus        78 ~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~ria~~~a~f~~pe~~lG~~p~~g~~~~l~~~vG~~~a~~l  157 (256)
T TIGR02280        78 IETFYNPLVRRLRALPLPVVCAVNGVAAGAGANLALACDIVLAAESARFIQAFAKIGLIPDSGGTWSLPRLVGRARAMGL  157 (256)
T ss_pred             HHHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEecCCCEEeChhhhcCCCCCccHHHHHHHHhCHHHHHHH
Confidence            11112356778999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhcCCcccc
Q 026342          230 WGLKKHVKC  238 (240)
Q Consensus       230 lltG~~i~A  238 (240)
                      +++|++|+|
T Consensus       158 ~l~g~~~~a  166 (256)
T TIGR02280       158 AMLGEKLDA  166 (256)
T ss_pred             HHcCCCCCH
Confidence            999999986

This family of proteins are found within apparent operons for the degradation of phenylacetic acid. These proteins contain the enoyl-CoA hydratase domain as detected by pfam00378. This activity is consistent with current hypotheses for the degradation pathway which involve the ligation of phenylacetate with coenzyme A (paaF), hydroxylation (paaGHIJK), ring-opening (paaN) and degradation of the resulting fatty acid-like compound to a Krebs cycle intermediate (paaABCDE).

>PRK09245 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=2.9e-41  Score=293.77  Aligned_cols=166  Identities=28%  Similarity=0.408  Sum_probs=145.1

Q ss_pred             eEEEEEEeCCCEEEEEEcCCCCCCCCCH-HHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCc----c
Q 026342           70 DIIYEKAVGEGIAKITINRPDRRNAFRP-HTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGY----A  144 (240)
Q Consensus        70 ~v~~~~~~~~~v~~Itlnrp~~~Nal~~-~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~----~  144 (240)
                      .|.+++  +++|++|+||||++.|++|. +|+.+|.++++.++.|+++|+|||+|.| ++||+|+|++++.....    .
T Consensus         4 ~v~~~~--~~~v~~itlnrp~~~Nal~~~~~~~~l~~~l~~~~~d~~vr~vVl~g~g-~~F~aG~Dl~~~~~~~~~~~~~   80 (266)
T PRK09245          4 FLLVER--DGHIVTLTMNRPETRNALSDNDAVDALVAACAAINADRSVRAVILTGAG-TAFSSGGNVKDMRARVGAFGGS   80 (266)
T ss_pred             ceEEEE--ECCEEEEEECCcccccCCChHHHHHHHHHHHHHHhcCCCceEEEEECCC-CCcccCcCHHHHhhcccccccc
Confidence            377777  68999999999999999995 9999999999999999999999999999 89999999987643111    0


Q ss_pred             chh--hhhhhhHHHHHHHHHcCCCcEEEEECchhchhhHHHhhhcCEEEEeCCcEEecccccccccCCCchHHHHHhhcC
Q 026342          145 DYE--NFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVS  222 (240)
Q Consensus       145 ~~~--~~~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~a~f~~pe~~~Gl~p~~g~~~~l~rlvG  222 (240)
                      ...  ......+.+++.++.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|
T Consensus        81 ~~~~~~~~~~~~~~~~~~l~~~~kpvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~~~vG  160 (266)
T PRK09245         81 PADIRQGYRHGIQRIPLALYNLEVPVIAAVNGPAIGAGCDLACMCDIRIASETARFAESFVKLGLIPGDGGAWLLPRIIG  160 (266)
T ss_pred             chhHHHHHHHHHHHHHHHHHcCCCCEEEEECCEeecHHHHHHHhCCEEEecCCCEEcccccccCcCCCcchhhhHHHHhh
Confidence            000  111112345678899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCcccc
Q 026342          223 TVQQCLWWGLKKHVKC  238 (240)
Q Consensus       223 ~~~a~ellltG~~i~A  238 (240)
                      ..+|++|+++|++++|
T Consensus       161 ~~~a~~l~l~g~~~~a  176 (266)
T PRK09245        161 MARAAEMAFTGDAIDA  176 (266)
T ss_pred             HHHHHHHHHcCCCcCH
Confidence            9999999999999986

>PRK07511 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=4.4e-41  Score=291.74  Aligned_cols=165  Identities=30%  Similarity=0.412  Sum_probs=146.2

Q ss_pred             eEEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCC---ccch
Q 026342           70 DIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDG---YADY  146 (240)
Q Consensus        70 ~v~~~~~~~~~v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~---~~~~  146 (240)
                      .+.++.  +++|++|+||||++.|+||.+|+.+|.++++++++|+++|+|||+|.| ++||+|+|++++....   ....
T Consensus         4 ~~~~~~--~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVl~g~g-~~F~~G~Dl~~~~~~~~~~~~~~   80 (260)
T PRK07511          4 ELLSRR--EGSTLVLTLSNPGARNALHPDMYAAGIEALNTAERDPSIRAVVLTGAG-GFFCAGGNLNRLLENRAKPPSVQ   80 (260)
T ss_pred             eeEEEe--ECCEEEEEECCcccccCCCHHHHHHHHHHHHHhccCCCeEEEEEECCC-CCcccCcCHHHHhhcccccchhH
Confidence            367776  799999999999999999999999999999999999999999999999 8999999998764311   1111


Q ss_pred             hhhhhhhHHHHHHHHHcCCCcEEEEECchhchhhHHHhhhcCEEEEeCCcEEecccccccccCCCchHHHHHhhcCHHHH
Q 026342          147 ENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVSTVQQ  226 (240)
Q Consensus       147 ~~~~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~a~f~~pe~~~Gl~p~~g~~~~l~rlvG~~~a  226 (240)
                      .... ..+.+++.++.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.+++
T Consensus        81 ~~~~-~~~~~~~~~l~~~~kpvIAav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a  159 (260)
T PRK07511         81 AASI-DGLHDWIRAIRAFPKPVIAAVEGAAAGAGFSLALACDLLVAARDAKFVMAYVKVGLTPDGGGSWFLARALPRQLA  159 (260)
T ss_pred             HHHH-HHHHHHHHHHHcCCCCEEEEECCeeehHHHHHHHhCCEEEeeCCCEEeccccccCcCCCchHHHHHHHHhCHHHH
Confidence            1111 134567888999999999999999999999999999999999999999999999999999899999999999999


Q ss_pred             HHHHhcCCcccc
Q 026342          227 CLWWGLKKHVKC  238 (240)
Q Consensus       227 ~ellltG~~i~A  238 (240)
                      ++|+++|+.++|
T Consensus       160 ~~l~ltg~~~~a  171 (260)
T PRK07511        160 TELLLEGKPISA  171 (260)
T ss_pred             HHHHHhCCCCCH
Confidence            999999999986

>PRK08321 naphthoate synthase; Validated

Probab=100.00  E-value=7.9e-41  Score=295.96  Aligned_cols=182  Identities=50%  Similarity=0.837  Sum_probs=152.3

Q ss_pred             cccceeeccCCCCcceeEEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCC------C
Q 026342           54 DVVWRIACDESGTEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGT------E  127 (240)
Q Consensus        54 ~~~~~~~~~~~~~~~~~v~~~~~~~~~v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~------~  127 (240)
                      +..|...+   .-.|++|.++++.+++|++||||||+++|+||.+|+.+|.++++.++.|+++|+|||+|.|+      +
T Consensus        11 ~~~~~~~~---~~~~~~i~~~~~~~~~va~itlnrP~~~Nal~~~~~~~l~~al~~~~~d~~vrvvVltg~g~~~~~~~~   87 (302)
T PRK08321         11 PDLWRPVP---GFDFTDITYHRAVDQGTVRIAFDRPEVRNAFRPHTVDELYRALDHARMSPDVGCVLLTGNGPSPKDGGW   87 (302)
T ss_pred             cccccCcC---CCCceeEEEEEecCCCEEEEEeCCcccccCCCHHHHHHHHHHHHHHhhCCCcEEEEEeCCCCCCCCCCC
Confidence            56676443   23577899988656899999999999999999999999999999999999999999999983      5


Q ss_pred             CcccCCCccccccCC-----cc--c-hh--hhhhhhHHHHHHHHHcCCCcEEEEECchhchhhHHHhhhcCEEEEe-CCc
Q 026342          128 AFCSGGDQALRTRDG-----YA--D-YE--NFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAA-DNA  196 (240)
Q Consensus       128 ~FcaG~Dl~~~~~~~-----~~--~-~~--~~~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~lal~~D~rias-~~a  196 (240)
                      +||+|+|++++....     ..  . ..  ........++...+.++||||||+|||+|+|||++|+++||+|||+ +++
T Consensus        88 ~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pkP~IAaV~G~a~GgG~~lalacD~ria~~~~a  167 (302)
T PRK08321         88 AFCSGGDQRIRGRDGYQYAEGDEADTVDPARAGRLHILEVQRLIRFMPKVVIAVVPGWAAGGGHSLHVVCDLTLASREHA  167 (302)
T ss_pred             eeecCcChhhhccccccccccccccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEcCeeehHHHHHHHhCCEEEEecCCC
Confidence            999999998643210     00  0 00  0111112345667899999999999999999999999999999999 689


Q ss_pred             EEecccccccccCCCchHHHHHhhcCHHHHHHHHhcCCcccc
Q 026342          197 IFGQTGPKVGSFDAGYGSSIMSRLVSTVQQCLWWGLKKHVKC  238 (240)
Q Consensus       197 ~f~~pe~~~Gl~p~~g~~~~l~rlvG~~~a~ellltG~~i~A  238 (240)
                      +|++||+++|++|+++++++|+|++|..+|++|+++|+.++|
T Consensus       168 ~f~~pe~~~Gl~p~~~~~~~L~r~vG~~~A~~l~ltG~~~~A  209 (302)
T PRK08321        168 RFKQTDADVGSFDGGYGSAYLARQVGQKFAREIFFLGRTYSA  209 (302)
T ss_pred             EEECCccccccCCCchHHHHHHHHhCHHHHHHHHHcCCccCH
Confidence            999999999999999899999999999999999999999986

>PRK05981 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=5.2e-41  Score=292.22  Aligned_cols=169  Identities=25%  Similarity=0.389  Sum_probs=147.3

Q ss_pred             cceeEEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCC-CeeEEEEeeCCCCCcccCCCccccccCCcc-
Q 026342           67 EFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDS-SVGVIILTGKGTEAFCSGGDQALRTRDGYA-  144 (240)
Q Consensus        67 ~~~~v~~~~~~~~~v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~-~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~-  144 (240)
                      +|+.+.+++  +++|++|+||||+++|++|.+|+.+|.++++.++.|+ ++|+|||+|.| ++||+|+|++++...... 
T Consensus         2 ~~~~v~~~~--~~~i~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~~v~vvvl~g~g-~~F~aG~Dl~~~~~~~~~~   78 (266)
T PRK05981          2 QFKKVTLDF--DGGVAILTLDHPEVMNAVSIDMLGGLAEALDAIEDGKAEVRCLVLTGAG-RGFCTGANLQGRGSGGRES   78 (266)
T ss_pred             CcceEEEEe--ECCEEEEEecCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCC-CCcccccCHHhhhcccccc
Confidence            466788887  7999999999999999999999999999999999876 49999999999 799999999976432110 


Q ss_pred             ----chhhhhhhhHHHHHHHHHcCCCcEEEEECchhchhhHHHhhhcCEEEEeCCcEEecccccccccCCCchHHHHHhh
Q 026342          145 ----DYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRL  220 (240)
Q Consensus       145 ----~~~~~~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~a~f~~pe~~~Gl~p~~g~~~~l~rl  220 (240)
                          .........+.+++.+|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+++
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~l~~~~kpvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~~e~~lG~~p~~g~~~~l~~~  158 (266)
T PRK05981         79 DSGGDAGAALETAYHPFLRRLRNLPCPIVTAVNGPAAGVGMSFALMGDLILCARSAYFLQAFRRIGLVPDGGSTWLLPRL  158 (266)
T ss_pred             cccchhHHHHHHHHHHHHHHHHhCCCCEEEEECCEeehHHHHHHHhCCEEEecCCCEEechHhhcCCCCCccHHHHHHHH
Confidence                0011111124567788999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCHHHHHHHHhcCCcccc
Q 026342          221 VSTVQQCLWWGLKKHVKC  238 (240)
Q Consensus       221 vG~~~a~ellltG~~i~A  238 (240)
                      +|..+|++|+++|+.++|
T Consensus       159 vg~~~a~~l~l~g~~~~a  176 (266)
T PRK05981        159 VGKARAMELSLLGEKLPA  176 (266)
T ss_pred             hHHHHHHHHHHhCCCcCH
Confidence            999999999999999986

>PRK07260 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=3.4e-41  Score=291.76  Aligned_cols=167  Identities=26%  Similarity=0.381  Sum_probs=146.7

Q ss_pred             eeEEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCC-ccchh
Q 026342           69 TDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDG-YADYE  147 (240)
Q Consensus        69 ~~v~~~~~~~~~v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~-~~~~~  147 (240)
                      +++.++.  +++|++|+||||++.|+||.+|+.+|.++++.++.|+++++|||+|.| ++||+|+|++++.... .....
T Consensus         2 ~~i~~~~--~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g-~~F~aG~Dl~~~~~~~~~~~~~   78 (255)
T PRK07260          2 EHIIYEV--EDDLATLTLNRPEVSNGFNIPMCQEILEALRLAEEDPSVRFLLINANG-KVFSVGGDLVEMKRAVDEDDVQ   78 (255)
T ss_pred             CceEEEE--ECCEEEEEeCCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCC-CCcccccCHHHHHhhccccchh
Confidence            4577776  689999999999999999999999999999999999999999999999 8999999998764311 11111


Q ss_pred             hh--hhhhHHHHHHHHHcCCCcEEEEECchhchhhHHHhhhcCEEEEeCCcEEecccccccccCCCchHHHHHhhcCHHH
Q 026342          148 NF--GRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVSTVQ  225 (240)
Q Consensus       148 ~~--~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~a~f~~pe~~~Gl~p~~g~~~~l~rlvG~~~  225 (240)
                      ..  ....+.+++.++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|+.+++++|++++|..+
T Consensus        79 ~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~  158 (255)
T PRK07260         79 SLVKIAELVNEISFAIKQLPKPVIMCVDGAVAGAAANMAVAADFCIASTKTKFIQAFVGVGLAPDAGGLFLLTRAIGLNR  158 (255)
T ss_pred             hHHHHHHHHHHHHHHHHcCCCCEEEEecCeeehhhHHHHHhCCEEEEeCCCEEechHhhcCCCCCCchhhhhHHhhCHHH
Confidence            11  1112456778899999999999999999999999999999999999999999999999999989999999999999


Q ss_pred             HHHHHhcCCcccc
Q 026342          226 QCLWWGLKKHVKC  238 (240)
Q Consensus       226 a~ellltG~~i~A  238 (240)
                      +++|+++|++++|
T Consensus       159 a~~l~l~g~~~sa  171 (255)
T PRK07260        159 ATHLAMTGEALTA  171 (255)
T ss_pred             HHHHHHhCCccCH
Confidence            9999999999986

>PRK07509 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=4.7e-41  Score=291.81  Aligned_cols=168  Identities=26%  Similarity=0.341  Sum_probs=146.2

Q ss_pred             ceeEEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccchh
Q 026342           68 FTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYE  147 (240)
Q Consensus        68 ~~~v~~~~~~~~~v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~~  147 (240)
                      ++.+.+++  +++|++|+||||++.|+||.+|+.+|.++++.++.|+++|+|||+|.| ++||+|+|++++.........
T Consensus         2 ~~~v~~~~--~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vvl~g~g-~~F~aG~Dl~~~~~~~~~~~~   78 (262)
T PRK07509          2 MDRVSVTI--EDGIADVRLNRPDKMNALDFAMFEELIATIKRLKKDRGIRAVILSGEG-GAFCAGLDVKSVASSPGNAVK   78 (262)
T ss_pred             CceEEEEe--eCCEEEEEecCcccccCCCHHHHHHHHHHHHHHhhCCCCeEEEEECCC-CCcCCCcCHHHHhcccchhhh
Confidence            34678887  799999999999999999999999999999999999999999999999 799999999876432111111


Q ss_pred             hhh------hhhHHHHHHHHHcCCCcEEEEECchhchhhHHHhhhcCEEEEeCCcEEecccccccccCCCchHHHHHhhc
Q 026342          148 NFG------RLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLV  221 (240)
Q Consensus       148 ~~~------~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~a~f~~pe~~~Gl~p~~g~~~~l~rlv  221 (240)
                      ...      ...+.+++..+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~kpvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~  158 (262)
T PRK07509         79 LLFKRLPGNANLAQRVSLGWRRLPVPVIAALEGVCFGGGLQIALGADIRIAAPDTKLSIMEAKWGLVPDMAGTVSLRGLV  158 (262)
T ss_pred             hHhhhhHHHHHHHHHHHHHHHhCCCCEEEEECCeeecchHHHHHhCCEEEecCCCEeecchhccCCCCCchHHHHHHHHh
Confidence            100      01123456678899999999999999999999999999999999999999999999999998999999999


Q ss_pred             CHHHHHHHHhcCCcccc
Q 026342          222 STVQQCLWWGLKKHVKC  238 (240)
Q Consensus       222 G~~~a~ellltG~~i~A  238 (240)
                      |..+|++|+++|+.++|
T Consensus       159 g~~~a~~l~ltg~~~~a  175 (262)
T PRK07509        159 RKDVARELTYTARVFSA  175 (262)
T ss_pred             CHHHHHHHHHcCCCcCH
Confidence            99999999999999986

>PRK06210 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=5.6e-41  Score=292.87  Aligned_cols=170  Identities=31%  Similarity=0.424  Sum_probs=147.4

Q ss_pred             CcceeEEEEEEeCC-CEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCcc
Q 026342           66 TEFTDIIYEKAVGE-GIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYA  144 (240)
Q Consensus        66 ~~~~~v~~~~~~~~-~v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~  144 (240)
                      +.|+.|.+++  ++ +|++|+||||+++|+||.+|+.+|.++|+.++.|+++|+|||+|.| ++||+|+|++++......
T Consensus         2 ~~~~~i~~~~--~~~~v~~itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~vr~vVl~g~g-~~FcaG~Dl~~~~~~~~~   78 (272)
T PRK06210          2 MAYDAVLYEV--ADSGVAVITLNRPDRLNAWTPVMEAEVYAAMDRAEADPAVRVIVLTGAG-RGFCAGADMGELQTIDPS   78 (272)
T ss_pred             CCcceEEEEE--CCCCEEEEEeCCcccccCCCHHHHHHHHHHHHHhccCCCeeEEEEECCC-CCcccccCHHHHhccCcc
Confidence            3456788887  67 9999999999999999999999999999999999999999999999 799999999876432111


Q ss_pred             ch------hhhhh---hhHHHHHHHHHcCCCcEEEEECchhchhhHHHhhhcCEEEEeCCcEEecccccccccCCCchHH
Q 026342          145 DY------ENFGR---LNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSS  215 (240)
Q Consensus       145 ~~------~~~~~---~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~a~f~~pe~~~Gl~p~~g~~~  215 (240)
                      ..      ..+..   ..+.+++.++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|+++
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~  158 (272)
T PRK06210         79 DGRRDTDVRPFVGNRRPDYQTRYHFLTALRKPVIAAINGACAGIGLTHALMCDVRFAADGAKFTTAFARRGLIAEHGISW  158 (272)
T ss_pred             cccccccchhhhhhhhhhHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEeCCCEEechHHhcCCCCCCchhh
Confidence            00      00100   0123456789999999999999999999999999999999999999999999999999998899


Q ss_pred             HHHhhcCHHHHHHHHhcCCcccc
Q 026342          216 IMSRLVSTVQQCLWWGLKKHVKC  238 (240)
Q Consensus       216 ~l~rlvG~~~a~ellltG~~i~A  238 (240)
                      +|++++|..+|++|+++|+.|+|
T Consensus       159 ~l~~~ig~~~a~~l~ltg~~~~a  181 (272)
T PRK06210        159 ILPRLVGHANALDLLLSARTFYA  181 (272)
T ss_pred             hhHhhhCHHHHHHHHHcCCccCH
Confidence            99999999999999999999987

>PRK05864 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=5.8e-41  Score=293.42  Aligned_cols=172  Identities=27%  Similarity=0.354  Sum_probs=147.0

Q ss_pred             CCcceeEEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCcc
Q 026342           65 GTEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYA  144 (240)
Q Consensus        65 ~~~~~~v~~~~~~~~~v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~  144 (240)
                      ..+++.|.+++. +++|++|+||||+++|+||.+|+.+|.++|++++.|+++|+|||+|.| ++||+|+|++++......
T Consensus         5 ~~~~~~v~~~~~-~~~v~~itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~vrvvVl~g~g-~~FcaG~Dl~~~~~~~~~   82 (276)
T PRK05864          5 RSTMSLVLVDHP-RPEIALITLNRPERMNSMAFDVMVPLKEALAEVSYDNSVRVVVLTGAG-RGFSSGADHKSAGVVPHV   82 (276)
T ss_pred             CCCCCceEEeee-cCCEEEEEecCCccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCC-CCeecCcchhhhhccccc
Confidence            456677888763 689999999999999999999999999999999999999999999999 799999999875321100


Q ss_pred             ----chhh--hhhhhHHHHHHHHHcCCCcEEEEECchhchhhHHHhhhcCEEEEeCCcEEecccccccccC-CCchHHHH
Q 026342          145 ----DYEN--FGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFD-AGYGSSIM  217 (240)
Q Consensus       145 ----~~~~--~~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~a~f~~pe~~~Gl~p-~~g~~~~l  217 (240)
                          ....  .....+.+++.++.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++| .+|++++|
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~~g~~~~l  162 (276)
T PRK05864         83 EGLTRPTYALRSMELLDDVILALRRLHQPVIAAVNGPAIGGGLCLALAADIRVASSSAYFRAAGINNGLTASELGLSYLL  162 (276)
T ss_pred             ccccchhHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeehhHHHHHHhCCEEEeeCCCEecCcccccCCCCCCcchheeh
Confidence                0010  0111234567788999999999999999999999999999999999999999999999997 66778899


Q ss_pred             HhhcCHHHHHHHHhcCCcccc
Q 026342          218 SRLVSTVQQCLWWGLKKHVKC  238 (240)
Q Consensus       218 ~rlvG~~~a~ellltG~~i~A  238 (240)
                      ++++|..+|++|+++|++++|
T Consensus       163 ~~~vG~~~A~~l~l~g~~~~a  183 (276)
T PRK05864        163 PRAIGSSRAFEIMLTGRDVDA  183 (276)
T ss_pred             HhhhCHHHHHHHHHcCCccCH
Confidence            999999999999999999986

>PRK05869 enoyl-CoA hydratase; Validated

Probab=100.00  E-value=5.3e-41  Score=285.01  Aligned_cols=158  Identities=24%  Similarity=0.371  Sum_probs=140.7

Q ss_pred             CCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccchhhhhhhhHHHH
Q 026342           78 GEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDL  157 (240)
Q Consensus        78 ~~~v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l  157 (240)
                      +++|++|+||||++ |+|+.+|+.+|.+++++++.|+++|+|||||.| ++||+|+|++++............. .+.++
T Consensus        15 ~~~i~~itlnrp~~-Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g-~~FcaG~Dl~~~~~~~~~~~~~~~~-~~~~~   91 (222)
T PRK05869         15 DAGLATLLLSRPPT-NALTRQVYREIVAAANELGRRDDVAAVILYGGH-EIFSAGDDMPELRTLSAQEADTAAR-VRQQA   91 (222)
T ss_pred             cCCEEEEEECCCCC-CCCCHHHHHHHHHHHHHHhcCCCceEEEEECCC-CCcCcCcCHHHHhccChhhHHHHHH-HHHHH
Confidence            58999999999985 999999999999999999999999999999998 7999999999764322211111111 24567


Q ss_pred             HHHHHcCCCcEEEEECchhchhhHHHhhhcCEEEEeCCcEEecccccccccCCCchHHHHHhhcCHHHHHHHHhcCCccc
Q 026342          158 QVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVSTVQQCLWWGLKKHVK  237 (240)
Q Consensus       158 ~~~i~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~a~f~~pe~~~Gl~p~~g~~~~l~rlvG~~~a~ellltG~~i~  237 (240)
                      +.++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|+++++.+|++++|..+|++++++|++++
T Consensus        92 ~~~i~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~ig~~~a~~l~ltg~~~~  171 (222)
T PRK05869         92 VDAVAAIPKPTVAAITGYALGAGLTLALAADWRVSGDNVKFGATEILAGLAPSGDGMARLTRAAGPSRAKELVFSGRFFD  171 (222)
T ss_pred             HHHHHhCCCCEEEEEcCEeecHHHHHHHhCCEEEecCCCEEcCchhccCCCCCccHHHHHHHHhCHHHHHHHHHcCCCcC
Confidence            88999999999999999999999999999999999999999999999999999988999999999999999999999998


Q ss_pred             c
Q 026342          238 C  238 (240)
Q Consensus       238 A  238 (240)
                      |
T Consensus       172 a  172 (222)
T PRK05869        172 A  172 (222)
T ss_pred             H
Confidence            6

>PRK08139 enoyl-CoA hydratase; Validated

Probab=100.00  E-value=8.3e-41  Score=291.01  Aligned_cols=165  Identities=30%  Similarity=0.412  Sum_probs=143.9

Q ss_pred             eeEEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccc-hh
Q 026342           69 TDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYAD-YE  147 (240)
Q Consensus        69 ~~v~~~~~~~~~v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~-~~  147 (240)
                      ..+.++.  +++|++|+||||+++|+||.+|+.+|.++++.++.|++||+|||+|.| ++||+|+|++++....... ..
T Consensus        11 ~~~~~~~--~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~~~~~~   87 (266)
T PRK08139         11 PLLLRED--RDGVATLTLNRPQAFNALSEAMLAALQAALDAIAADPSVRVVVLAAAG-KAFCAGHDLKEMRAARGLAYFR   87 (266)
T ss_pred             CceEEEe--eCCEEEEEeCCcccccCCCHHHHHHHHHHHHHHhcCCCeeEEEEecCC-CcceeccCHHHHhcccchhHHH
Confidence            4567776  799999999999999999999999999999999999999999999999 8999999998764321111 11


Q ss_pred             hhhhhhHHHHHHHHHcCCCcEEEEECchhchhhHHHhhhcCEEEEeCCcEEecccccccccCCCchHHHHHhhcCHHHHH
Q 026342          148 NFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVSTVQQC  227 (240)
Q Consensus       148 ~~~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~a~f~~pe~~~Gl~p~~g~~~~l~rlvG~~~a~  227 (240)
                      .... .+.+++.++.++||||||+|||+|+|||++|+++|||||++++++|++||+++|++|++ ++++|+|++|..+|+
T Consensus        88 ~~~~-~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~-~~~~l~r~vG~~~A~  165 (266)
T PRK08139         88 ALFA-RCSRVMQAIVALPQPVIARVHGIATAAGCQLVASCDLAVAADTARFAVPGVNIGLFCST-PMVALSRNVPRKQAM  165 (266)
T ss_pred             HHHH-HHHHHHHHHHhCCCCEEEEECceeeHHHHHHHHhCCEEEEeCCCEEeCcccCcCCCCCc-cHHHHHHHhCHHHHH
Confidence            1111 23567788999999999999999999999999999999999999999999999999876 567899999999999


Q ss_pred             HHHhcCCcccc
Q 026342          228 LWWGLKKHVKC  238 (240)
Q Consensus       228 ellltG~~i~A  238 (240)
                      +|+++|+.++|
T Consensus       166 ~l~ltg~~~~a  176 (266)
T PRK08139        166 EMLLTGEFIDA  176 (266)
T ss_pred             HHHHcCCccCH
Confidence            99999999986

>PRK06688 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=7.6e-41  Score=290.02  Aligned_cols=165  Identities=34%  Similarity=0.483  Sum_probs=147.6

Q ss_pred             eeEEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccchhh
Q 026342           69 TDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYEN  148 (240)
Q Consensus        69 ~~v~~~~~~~~~v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~~~  148 (240)
                      +.|.+++  +++|++|+||||++.|++|.+|+.+|.++++.++.|+++|+|||+|.| ++||+|+|++++....... ..
T Consensus         5 ~~i~~~~--~~~v~~i~lnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g-~~F~aG~Dl~~~~~~~~~~-~~   80 (259)
T PRK06688          5 TDLLVEL--EDGVLTITINRPDKKNALTAAMYQALADALEAAATDPAVRVVVLTGAG-RAFSAGGDIKDFPKAPPKP-PD   80 (259)
T ss_pred             CceEEEE--ECCEEEEEecCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCC-CCccCccCHHHHhccCcch-HH
Confidence            4577877  789999999999999999999999999999999999999999999999 8999999998765322111 11


Q ss_pred             hhhhhHHHHHHHHHcCCCcEEEEECchhchhhHHHhhhcCEEEEeCCcEEecccccccccCCCchHHHHHhhcCHHHHHH
Q 026342          149 FGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVSTVQQCL  228 (240)
Q Consensus       149 ~~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~a~f~~pe~~~Gl~p~~g~~~~l~rlvG~~~a~e  228 (240)
                      ... .+.+++.++.++|||+||+|||+|+|||++|+++||||||+++++|++||+++|++|++|++++|++++|..+|++
T Consensus        81 ~~~-~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~~~~G~~~a~~  159 (259)
T PRK06688         81 ELA-PVNRFLRAIAALPKPVVAAVNGPAVGVGVSLALACDLVYASESAKFSLPFAKLGLCPDAGGSALLPRLIGRARAAE  159 (259)
T ss_pred             HHH-HHHHHHHHHHcCCCCEEEEECCeeecHHHHHHHhCCEEEecCCCEecCchhhcCCCCCcchhhHHHHHhhHHHHHH
Confidence            111 3457788999999999999999999999999999999999999999999999999999989999999999999999


Q ss_pred             HHhcCCcccc
Q 026342          229 WWGLKKHVKC  238 (240)
Q Consensus       229 llltG~~i~A  238 (240)
                      |+++|+.++|
T Consensus       160 l~l~g~~~~a  169 (259)
T PRK06688        160 MLLLGEPLSA  169 (259)
T ss_pred             HHHhCCccCH
Confidence            9999999986

>PRK11423 methylmalonyl-CoA decarboxylase; Provisional

Probab=100.00  E-value=8.3e-41  Score=290.27  Aligned_cols=166  Identities=26%  Similarity=0.338  Sum_probs=145.6

Q ss_pred             ceeEEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCC-CCCcccCCCccccccCCccch
Q 026342           68 FTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKG-TEAFCSGGDQALRTRDGYADY  146 (240)
Q Consensus        68 ~~~v~~~~~~~~~v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g-~~~FcaG~Dl~~~~~~~~~~~  146 (240)
                      ++.+.++.  +++|++||||||+++|+||.+|+.+|.++++.++.|+ +|+|||+|.| +++||+|+|++++..... +.
T Consensus         3 ~~~~~~~~--~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~-v~~vvltg~~~~~~FcaG~Dl~~~~~~~~-~~   78 (261)
T PRK11423          3 MQYVNVVT--INKIATITFNNPAKRNALSKVLIDDLMQALSDLNRPE-IRVVILRAPSGSKVWSAGHDIHELPSGGR-DP   78 (261)
T ss_pred             ccceEEEe--ECCEEEEEEcCccccCCCCHHHHHHHHHHHHHHhcCC-ceEEEEECCCCCCeeECCcCHHHHhhccc-cH
Confidence            45678877  7999999999999999999999999999999999888 9999999963 479999999987632211 11


Q ss_pred             hhhhhhhHHHHHHHHHcCCCcEEEEECchhchhhHHHhhhcCEEEEeCCcEEecccccccccCCCchHHHHHhhcCHHHH
Q 026342          147 ENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVSTVQQ  226 (240)
Q Consensus       147 ~~~~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~a~f~~pe~~~Gl~p~~g~~~~l~rlvG~~~a  226 (240)
                      ..+.. .+.+++..+..+||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++++++++++++|+++|
T Consensus        79 ~~~~~-~~~~l~~~i~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~~~~g~~~~l~~~vg~~~a  157 (261)
T PRK11423         79 LSYDD-PLRQILRMIQKFPKPVIAMVEGSVWGGAFELIMSCDLIIAASTSTFAMTPANLGVPYNLSGILNFTNDAGFHIV  157 (261)
T ss_pred             HHHHH-HHHHHHHHHHhCCCCEEEEEecEEechHHHHHHhCCEEEecCCCEecCchhhcCCCCCccHHHHHHHHhHHHHH
Confidence            11111 34567888999999999999999999999999999999999999999999999999998889999999999999


Q ss_pred             HHHHhcCCcccc
Q 026342          227 CLWWGLKKHVKC  238 (240)
Q Consensus       227 ~ellltG~~i~A  238 (240)
                      ++|+++|++++|
T Consensus       158 ~~l~l~g~~~~a  169 (261)
T PRK11423        158 KEMFFTASPITA  169 (261)
T ss_pred             HHHHHcCCCcCH
Confidence            999999999986

>PLN02888 enoyl-CoA hydratase

Probab=100.00  E-value=1.2e-40  Score=289.77  Aligned_cols=166  Identities=33%  Similarity=0.420  Sum_probs=144.7

Q ss_pred             cceeEEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccch
Q 026342           67 EFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADY  146 (240)
Q Consensus        67 ~~~~v~~~~~~~~~v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~  146 (240)
                      ..+.|.++.. +++|++|+||||++.|+||.+|+.+|.++|+.++.|+++|+|||+|.| ++||+|+|++++........
T Consensus         7 ~~~~i~~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~~~~   84 (265)
T PLN02888          7 SENLILVPKS-RNGIATITINRPKALNALTRPMMVELAAAFKRLDEDDSVKVIILTGSG-RAFCSGVDLTAAEEVFKGDV   84 (265)
T ss_pred             CCCeEEEEec-cCCEEEEEEcCCCcccCCCHHHHHHHHHHHHHHhhCCCceEEEEECCC-CcccCCCCHHHHHhhccchh
Confidence            3345677642 689999999999999999999999999999999999999999999999 79999999986532111111


Q ss_pred             hhhhhhhHHHHHHHHHcCCCcEEEEECchhchhhHHHhhhcCEEEEeCCcEEecccccccccCCCchHHHHHhhcCHHHH
Q 026342          147 ENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVSTVQQ  226 (240)
Q Consensus       147 ~~~~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~a~f~~pe~~~Gl~p~~g~~~~l~rlvG~~~a  226 (240)
                      .   . ...+++..+.++|||+||+|||+|+|||++|+++||||||+++++|++||+++|++|++|++++|++++|+.+|
T Consensus        85 ~---~-~~~~~~~~i~~~~kPvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a  160 (265)
T PLN02888         85 K---D-VETDPVAQMERCRKPIIGAINGFAITAGFEIALACDILVASRGAKFIDTHAKFGIFPSWGLSQKLSRIIGANRA  160 (265)
T ss_pred             h---H-HHHHHHHHHHhCCCCEEEEECCeeechHHHHHHhCCEEEecCCCEecCccccccCCCCccHhhHHHHHhCHHHH
Confidence            0   1 12345668899999999999999999999999999999999999999999999999999899999999999999


Q ss_pred             HHHHhcCCcccc
Q 026342          227 CLWWGLKKHVKC  238 (240)
Q Consensus       227 ~ellltG~~i~A  238 (240)
                      ++|+++|++|+|
T Consensus       161 ~~l~ltg~~~~a  172 (265)
T PLN02888        161 REVSLTAMPLTA  172 (265)
T ss_pred             HHHHHhCCccCH
Confidence            999999999986

>PRK07468 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.3e-40  Score=289.22  Aligned_cols=168  Identities=28%  Similarity=0.448  Sum_probs=143.0

Q ss_pred             ceeEEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCc-cch
Q 026342           68 FTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGY-ADY  146 (240)
Q Consensus        68 ~~~v~~~~~~~~~v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~-~~~  146 (240)
                      |+.|.++++ +++|++|+||||++.|+||.+|+.+|.++++.++.|+++++|||+|.| ++||+|+|++++..... ...
T Consensus         3 ~~~~~~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g-~~F~aG~Dl~~~~~~~~~~~~   80 (262)
T PRK07468          3 FETIRIAVD-ARGVATLTLNRPEKHNALSARMIAELTTAARRLAADAAVRVVVLTGAG-KSFCAGGDLGWMRAQMTADRA   80 (262)
T ss_pred             cceEEEEEc-CCcEEEEEEcCcccccCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCC-CcccCCcCHHHHHhhcccchh
Confidence            445778762 368999999999999999999999999999999999999999999999 79999999987542111 111


Q ss_pred             hh-hhhhhHHHHHHHHHcCCCcEEEEECchhchhhHHHhhhcCEEEEeCCcEEecccccccccCCCchHHHHHhhcCHHH
Q 026342          147 EN-FGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVSTVQ  225 (240)
Q Consensus       147 ~~-~~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~a~f~~pe~~~Gl~p~~g~~~~l~rlvG~~~  225 (240)
                      .. .....+.+++.++..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++++++++ +++|..+
T Consensus        81 ~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~ria~~~a~f~~pe~~~Gl~p~~g~~~~~-~~vG~~~  159 (262)
T PRK07468         81 TRIEEARRLAMMLKALNDLPKPLIGRIQGQAFGGGVGLISVCDVAIAVSGARFGLTETRLGLIPATISPYVV-ARMGEAN  159 (262)
T ss_pred             hHHHHHHHHHHHHHHHHcCCCCEEEEECCEEEhHHHHHHHhCCEEEEeCCCEEeCchhccCCCcccchhhHH-hhccHHH
Confidence            10 011124567788999999999999999999999999999999999999999999999999988777644 5699999


Q ss_pred             HHHHHhcCCcccc
Q 026342          226 QCLWWGLKKHVKC  238 (240)
Q Consensus       226 a~ellltG~~i~A  238 (240)
                      |++|+++|++++|
T Consensus       160 a~~lll~g~~~~a  172 (262)
T PRK07468        160 ARRVFMSARLFDA  172 (262)
T ss_pred             HHHHHHhCCccCH
Confidence            9999999999986

>PRK08252 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.3e-40  Score=287.87  Aligned_cols=161  Identities=33%  Similarity=0.441  Sum_probs=140.7

Q ss_pred             eEEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccchhhh
Q 026342           70 DIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENF  149 (240)
Q Consensus        70 ~v~~~~~~~~~v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~~~~  149 (240)
                      .|.+++  +++|++|+||||+++|+||.+|+.+|.+++++++.|+++|+|||+|.| ++||+|+|++++.....  ....
T Consensus         4 ~v~~~~--~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g-~~F~aG~Dl~~~~~~~~--~~~~   78 (254)
T PRK08252          4 EVLVER--RGRVLIITINRPEARNAVNAAVAQGLAAALDELDADPDLSVGILTGAG-GTFCAGMDLKAFARGER--PSIP   78 (254)
T ss_pred             eEEEEE--ECCEEEEEECCCcccCCCCHHHHHHHHHHHHHHhhCCCceEEEEECCC-CceEcCcCHHHHhcccc--hhhh
Confidence            477777  789999999999999999999999999999999999999999999999 89999999987643211  1111


Q ss_pred             hhhhHHHHHHHHHcCCCcEEEEECchhchhhHHHhhhcCEEEEeCCcEEecccccccccCCCchHHHHHhhcCHHHHHHH
Q 026342          150 GRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVSTVQQCLW  229 (240)
Q Consensus       150 ~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~a~f~~pe~~~Gl~p~~g~~~~l~rlvG~~~a~el  229 (240)
                      .. .+..+.  ...+||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..+|++|
T Consensus        79 ~~-~~~~~~--~~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a~~l  155 (254)
T PRK08252         79 GR-GFGGLT--ERPPRKPLIAAVEGYALAGGFELALACDLIVAARDAKFGLPEVKRGLVAAGGGLLRLPRRIPYHIAMEL  155 (254)
T ss_pred             HH-HHHHHH--HhcCCCCEEEEECCEEehHHHHHHHhCCEEEEeCCCEEeCchhhcCCCCCchHHHHHHHHcCHHHHHHH
Confidence            11 122222  247999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhcCCcccc
Q 026342          230 WGLKKHVKC  238 (240)
Q Consensus       230 lltG~~i~A  238 (240)
                      +++|++|+|
T Consensus       156 ~l~g~~~~a  164 (254)
T PRK08252        156 ALTGDMLTA  164 (254)
T ss_pred             HHcCCccCH
Confidence            999999986

>PRK07854 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=2.1e-40  Score=284.95  Aligned_cols=158  Identities=30%  Similarity=0.437  Sum_probs=140.8

Q ss_pred             EEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccchhhhh
Q 026342           71 IIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFG  150 (240)
Q Consensus        71 v~~~~~~~~~v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~~~~~  150 (240)
                      |.+++  +++|++||||||+++|+||.+|+.+|.+++++++.+ ++|+|||+|.| ++||+|+|++...     ....+.
T Consensus         2 ~~~~~--~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~~-~vr~vvl~g~g-~~F~aG~Dl~~~~-----~~~~~~   72 (243)
T PRK07854          2 IGVTR--DGQVLTIELQRPERRNALNAELCEELREAVRKAVDE-SARAIVLTGQG-TVFCAGADLSGDV-----YADDFP   72 (243)
T ss_pred             ceEEE--eCCEEEEEeCCCccccCCCHHHHHHHHHHHHHHhcC-CceEEEEECCC-CceecccCCccch-----hHHHHH
Confidence            45666  689999999999999999999999999999999865 89999999999 8999999998421     011111


Q ss_pred             hhhHHHHHHHHHcCCCcEEEEECchhchhhHHHhhhcCEEEEeCCcEEecccccccccCCCchHHHHHhhcCHHHHHHHH
Q 026342          151 RLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVSTVQQCLWW  230 (240)
Q Consensus       151 ~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~a~f~~pe~~~Gl~p~~g~~~~l~rlvG~~~a~ell  230 (240)
                      . .+.+++.++.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|+++++++|++++|+.+|++|+
T Consensus        73 ~-~~~~~~~~l~~~~kP~Iaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~~~~G~~~a~~l~  151 (243)
T PRK07854         73 D-ALIEMLHAIDAAPVPVIAAINGPAIGAGLQLAMACDLRVVAPEAYFQFPVAKYGIALDNWTIRRLSSLVGGGRARAML  151 (243)
T ss_pred             H-HHHHHHHHHHhCCCCEEEEecCcccccHHHHHHhCCEEEEcCCCEEeccccccccCCCccHHHHHHHHhCHHHHHHHH
Confidence            1 245677889999999999999999999999999999999999999999999999999998899999999999999999


Q ss_pred             hcCCcccc
Q 026342          231 GLKKHVKC  238 (240)
Q Consensus       231 ltG~~i~A  238 (240)
                      ++|++|+|
T Consensus       152 ltg~~~~a  159 (243)
T PRK07854        152 LGAEKLTA  159 (243)
T ss_pred             HcCCCcCH
Confidence            99999986

>PRK03580 carnitinyl-CoA dehydratase; Provisional

Probab=100.00  E-value=2e-40  Score=287.88  Aligned_cols=164  Identities=29%  Similarity=0.404  Sum_probs=143.6

Q ss_pred             eEEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccchhhh
Q 026342           70 DIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENF  149 (240)
Q Consensus        70 ~v~~~~~~~~~v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~~~~  149 (240)
                      .|.+++  +++|++|+||||+ .|++|.+|+.+|.++++.++.|++||+|||+|.|+++||+|+|++++....... ..+
T Consensus         4 ~i~~~~--~~~v~~itlnrp~-~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~~F~aG~Dl~~~~~~~~~~-~~~   79 (261)
T PRK03580          4 SLHTTR--NGSILEITLDRPK-ANAIDAKTSFAMGEVFLNFRDDPELRVAIITGAGEKFFSAGWDLKAAAEGEAPD-ADF   79 (261)
T ss_pred             eEEEEE--ECCEEEEEECCcc-ccCCCHHHHHHHHHHHHHHHhCCCcEEEEEEeCCCCceecccCHHHHhccCcch-hhh
Confidence            377777  7899999999996 699999999999999999999999999999999867999999998764322111 111


Q ss_pred             hhhhHHHHHHHHHcCCCcEEEEECchhchhhHHHhhhcCEEEEeCCcEEecccccccccCCCchHHHHHhhcCHHHHHHH
Q 026342          150 GRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVSTVQQCLW  229 (240)
Q Consensus       150 ~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~a~f~~pe~~~Gl~p~~g~~~~l~rlvG~~~a~el  229 (240)
                      .. ....++.++..+|||+||+|||+|+|||++|+++|||||++++++|++||+++|++|+++++++|++++|+.+|+++
T Consensus        80 ~~-~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~~~vg~~~a~~l  158 (261)
T PRK03580         80 GP-GGFAGLTEIFDLDKPVIAAVNGYAFGGGFELALAADFIVCADNASFALPEAKLGIVPDSGGVLRLPKRLPPAIANEM  158 (261)
T ss_pred             hh-hhhHHHHHHHhCCCCEEEEECCeeehHHHHHHHHCCEEEecCCCEEeCcccccCcCCCccHHHHHHHHhCHHHHHHH
Confidence            11 12345678999999999999999999999999999999999999999999999999999889999999999999999


Q ss_pred             HhcCCcccc
Q 026342          230 WGLKKHVKC  238 (240)
Q Consensus       230 lltG~~i~A  238 (240)
                      +++|+.++|
T Consensus       159 ~l~g~~~~a  167 (261)
T PRK03580        159 VMTGRRMDA  167 (261)
T ss_pred             HHhCCccCH
Confidence            999999986

>PRK07110 polyketide biosynthesis enoyl-CoA hydratase; Validated

Probab=100.00  E-value=2.3e-40  Score=285.71  Aligned_cols=164  Identities=24%  Similarity=0.288  Sum_probs=146.4

Q ss_pred             ceeEEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccchh
Q 026342           68 FTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYE  147 (240)
Q Consensus        68 ~~~v~~~~~~~~~v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~~  147 (240)
                      ++.+.++.  +++|++|+||||++.|++|.+|+.+|.+++++++.|+++|+|||+|.| ++||+|+|++++...... ..
T Consensus         4 ~~~~~~~~--~~~v~~i~ln~p~~~Nal~~~~~~~L~~~l~~~~~d~~vr~vvl~g~g-~~F~aG~Dl~~~~~~~~~-~~   79 (249)
T PRK07110          4 KVVELREV--EEGIAQVTMQDRVNKNAFSDELCDQLHEAFDTIAQDPRYKVVILTGYP-NYFATGGTQEGLLSLQTG-KG   79 (249)
T ss_pred             CceEEEEe--eCCEEEEEecCCCccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCC-CCeeCCcChHHHhhccch-hh
Confidence            45677777  799999999999999999999999999999999999999999999999 799999999876432211 11


Q ss_pred             hhhhhhHHHHHHHHHcCCCcEEEEECchhchhhHHHhhhcCEEEEeCCcEEecccccccccCCCchHHHHHhhcCHHHHH
Q 026342          148 NFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVSTVQQC  227 (240)
Q Consensus       148 ~~~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~a~f~~pe~~~Gl~p~~g~~~~l~rlvG~~~a~  227 (240)
                      .+ . . .+++..+.++|||+||+|||+|+|||++|+++||+||++++++|++||.++|++|+++++++|++++|+.+|+
T Consensus        80 ~~-~-~-~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~~a~  156 (249)
T PRK07110         80 TF-T-E-ANLYSLALNCPIPVIAAMQGHAIGGGLVLGLYADIVVLSRESVYTANFMKYGFTPGMGATAILPEKLGLALGQ  156 (249)
T ss_pred             hH-h-h-HHHHHHHHcCCCCEEEEecCceechHHHHHHhCCEEEEeCCCEecCchhccCCCCCchHHHHHHHHhCHHHHH
Confidence            11 1 1 4677889999999999999999999999999999999999999999999999999998899999999999999


Q ss_pred             HHHhcCCcccc
Q 026342          228 LWWGLKKHVKC  238 (240)
Q Consensus       228 ellltG~~i~A  238 (240)
                      +|+++|++++|
T Consensus       157 ~llltg~~~~a  167 (249)
T PRK07110        157 EMLLTARYYRG  167 (249)
T ss_pred             HHHHcCCccCH
Confidence            99999999986

>PRK08258 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=2.8e-40  Score=289.22  Aligned_cols=166  Identities=27%  Similarity=0.420  Sum_probs=144.9

Q ss_pred             eeEEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCC----cc
Q 026342           69 TDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDG----YA  144 (240)
Q Consensus        69 ~~v~~~~~~~~~v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~----~~  144 (240)
                      +.+.++.  +++|++|+||||++.|+|+.+|+.+|.+++++++.|+++|+|||+|.| ++||+|+|++++....    ..
T Consensus        17 ~~~~~~~--~~~v~~itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~vr~vVltg~g-~~FsaG~Dl~~~~~~~~~~~~~   93 (277)
T PRK08258         17 RHFLWEV--DDGVATITLNRPERKNPLTFESYAELRDLFRELVYADDVKAVVLTGAG-GNFCSGGDVHEIIGPLTKMDMP   93 (277)
T ss_pred             cceEEEE--ECCEEEEEeCCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEeCCC-CCcccccCHHHHhccccccChh
Confidence            3577877  799999999999999999999999999999999999999999999999 7999999998763211    11


Q ss_pred             chhhhhhhhHHHHHHHHHcCCCcEEEEECchhchhhHHHhhhcCEEEEeCCcEEecccccccccC-CCchHHHHHhhcCH
Q 026342          145 DYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFD-AGYGSSIMSRLVST  223 (240)
Q Consensus       145 ~~~~~~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~a~f~~pe~~~Gl~p-~~g~~~~l~rlvG~  223 (240)
                      ....+.. .+.+++.+|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++| ++|++++|++++|.
T Consensus        94 ~~~~~~~-~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~~g~~~~l~~~vG~  172 (277)
T PRK08258         94 ELLAFTR-MTGDLVKAMRACPQPIIAAVDGVCAGAGAILAMASDLRLGTPSAKTAFLFTRVGLAGADMGACALLPRIIGQ  172 (277)
T ss_pred             HHHHHHH-HHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEecCCCEEeccccccCcCCCCchHHHHHHHHhCH
Confidence            1111111 234677889999999999999999999999999999999999999999999999995 56778999999999


Q ss_pred             HHHHHHHhcCCcccc
Q 026342          224 VQQCLWWGLKKHVKC  238 (240)
Q Consensus       224 ~~a~ellltG~~i~A  238 (240)
                      .+|++|+++|+.++|
T Consensus       173 ~~a~~l~ltg~~~~a  187 (277)
T PRK08258        173 GRASELLYTGRSMSA  187 (277)
T ss_pred             HHHHHHHHcCCCCCH
Confidence            999999999999986

>PRK06072 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.9e-40  Score=286.00  Aligned_cols=160  Identities=24%  Similarity=0.308  Sum_probs=142.4

Q ss_pred             EEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccchhhhh
Q 026342           71 IIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFG  150 (240)
Q Consensus        71 v~~~~~~~~~v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~~~~~  150 (240)
                      |.+++  +++|++|+||||++.|+||.+|+.+|.++++.++.|+++|+|||+|.| ++||+|+|++++....   .... 
T Consensus         2 i~~~~--~~~v~~itlnrp~~~Nal~~~~~~~l~~a~~~~~~d~~vr~vVl~g~g-~~F~aG~Dl~~~~~~~---~~~~-   74 (248)
T PRK06072          2 IKVES--REGYAIVTMSRPDKLNALNLEMRNEFISKLKQINADPKIRVVIVTGEG-RAFCVGADLSEFAPDF---AIDL-   74 (248)
T ss_pred             eEEEE--ECCEEEEEECCcccccCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCC-CCcccCcCHHHHhhhh---HHHH-
Confidence            45666  799999999999999999999999999999999999999999999999 7999999998764311   1111 


Q ss_pred             hhhHHHHHHHHHcCCCcEEEEECchhchhhHHHhhhcCEEEEeCCcEEecccccccccCCCchHHHHHhhcCHHHHHHHH
Q 026342          151 RLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVSTVQQCLWW  230 (240)
Q Consensus       151 ~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~a~f~~pe~~~Gl~p~~g~~~~l~rlvG~~~a~ell  230 (240)
                      ...+.+++..+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|+++++++++|. ++++++
T Consensus        75 ~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~~~~g~-~a~~ll  153 (248)
T PRK06072         75 RETFYPIIREIRFSDKIYISAINGVTAGACIGIALSTDFKFASRDVKFVTAFQRLGLASDTGVAYFLLKLTGQ-RFYEIL  153 (248)
T ss_pred             HHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEcCCCEEecchhhcCcCCCchHHHHHHHHhhH-HHHHHH
Confidence            1124567778999999999999999999999999999999999999999999999999998889999999996 899999


Q ss_pred             hcCCcccc
Q 026342          231 GLKKHVKC  238 (240)
Q Consensus       231 ltG~~i~A  238 (240)
                      ++|+.|+|
T Consensus       154 l~g~~~~a  161 (248)
T PRK06072        154 VLGGEFTA  161 (248)
T ss_pred             HhCCccCH
Confidence            99999986

>PRK08259 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=2.6e-40  Score=286.05  Aligned_cols=163  Identities=29%  Similarity=0.404  Sum_probs=140.7

Q ss_pred             eEEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccchhhh
Q 026342           70 DIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENF  149 (240)
Q Consensus        70 ~v~~~~~~~~~v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~~~~  149 (240)
                      .|.+++  +++|++|+||||+++|+||.+|+.+|.++++.++.|+++|+|||+|.| ++||+|+|++++.......... 
T Consensus         4 ~i~~~~--~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvltg~g-~~FcaG~Dl~~~~~~~~~~~~~-   79 (254)
T PRK08259          4 SVRVER--NGPVTTVILNRPEVRNAVDGPTAAALADAFRAFDADDAASVAVLWGAG-GTFCAGADLKAVGTGRGNRLHP-   79 (254)
T ss_pred             eEEEEE--ECCEEEEEecCCccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCC-CCccCCcChHHHhcccchhhhh-
Confidence            377776  789999999999999999999999999999999999999999999999 7999999998764321111110 


Q ss_pred             hhhhHHHHHHHHHcCCCcEEEEECchhchhhHHHhhhcCEEEEeCCcEEecccccccccCCCchHHHHHhhcCHHHHHHH
Q 026342          150 GRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVSTVQQCLW  229 (240)
Q Consensus       150 ~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~a~f~~pe~~~Gl~p~~g~~~~l~rlvG~~~a~el  229 (240)
                      ..  ...+...+.++|||+||+|||+|+|||++|+++|||||++++++|++||+++|++|.++++++|++++|..+|++|
T Consensus        80 ~~--~~~~~~~~~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~~~a~~l  157 (254)
T PRK08259         80 SG--DGPMGPSRMRLSKPVIAAVSGYAVAGGLELALWCDLRVAEEDAVFGVFCRRWGVPLIDGGTVRLPRLIGHSRAMDL  157 (254)
T ss_pred             hh--cchhhhHHhcCCCCEEEEECCEEEhHHHHHHHhCCEEEecCCCEecCcccccCCCCCccHHHHHHHHhCHHHHHHH
Confidence            00  0111223458999999999999999999999999999999999999999999999998899999999999999999


Q ss_pred             HhcCCcccc
Q 026342          230 WGLKKHVKC  238 (240)
Q Consensus       230 lltG~~i~A  238 (240)
                      +++|+.|+|
T Consensus       158 ll~g~~~~a  166 (254)
T PRK08259        158 ILTGRPVDA  166 (254)
T ss_pred             HHcCCccCH
Confidence            999999986

>TIGR03189 dienoyl_CoA_hyt cyclohexa-1,5-dienecarbonyl-CoA hydratase

Probab=100.00  E-value=4.9e-40  Score=283.92  Aligned_cols=159  Identities=20%  Similarity=0.336  Sum_probs=140.2

Q ss_pred             EEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccchhhhh
Q 026342           71 IIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFG  150 (240)
Q Consensus        71 v~~~~~~~~~v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~~~~~  150 (240)
                      |.+++  +++|++|+||||+ .|+||.+|+.+|.++++.++.|+++|+|||+|.| ++||+|+|++++...   ......
T Consensus         3 v~~~~--~~~v~~itlnrp~-~Nal~~~~~~~l~~~l~~~~~~~~vr~vVl~g~g-~~FcaG~Dl~~~~~~---~~~~~~   75 (251)
T TIGR03189         3 VWLER--DGKLLRLRLARPK-ANIVDAAMIAALSAALGEHLEDSALRAVLLDAEG-PHFSFGASVAEHMPD---QCAAML   75 (251)
T ss_pred             EEEEe--eCCEEEEEeCCCC-cCCCCHHHHHHHHHHHHHHHcCCCceEEEEECCC-CceecCcChhhhCch---hHHHHH
Confidence            66776  6899999999997 6999999999999999999999999999999999 799999999874321   111111


Q ss_pred             hhhHHHHHHHHHcCCCcEEEEECchhchhhHHHhhhcCEEEEeCCcEEecccccccccCCCchHHHHHhhcCHHHHHHHH
Q 026342          151 RLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVSTVQQCLWW  230 (240)
Q Consensus       151 ~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~a~f~~pe~~~Gl~p~~g~~~~l~rlvG~~~a~ell  230 (240)
                      . ...+++.++.++||||||+|||+|+|||++|+++|||||++++++|++||+++|++|++ ++++|++++|..+|++|+
T Consensus        76 ~-~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~-~~~~l~~~vg~~~a~~l~  153 (251)
T TIGR03189        76 A-SLHKLVIAMLDSPVPILVAVRGQCLGGGLEVAAAGNLMFAAPDAKLGQPEIVLGVFAPA-ASCLLPERMGRVAAEDLL  153 (251)
T ss_pred             H-HHHHHHHHHHhCCCCEEEEecCeeeeHHHHHHHhCCEEEEcCCCEEeCchhhcCCCCCc-hHHHHHHHhCHHHHHHHH
Confidence            1 23467788999999999999999999999999999999999999999999999999864 678999999999999999


Q ss_pred             hcCCcccc
Q 026342          231 GLKKHVKC  238 (240)
Q Consensus       231 ltG~~i~A  238 (240)
                      ++|++++|
T Consensus       154 ltg~~~~a  161 (251)
T TIGR03189       154 YSGRSIDG  161 (251)
T ss_pred             HcCCCCCH
Confidence            99999986

This enzyme, cyclohexa-1,5-dienecarbonyl-CoA hydratase, also called dienoyl-CoA hydratase, acts on the product of benzoyl-CoA reductase (EC 1.3.99.15). Benzoyl-CoA is a common intermediate in the degradation of many aromatic compounds, and this enzyme is part of an anaerobic pathway for dearomatization and degradation.

>PLN02157 3-hydroxyisobutyryl-CoA hydrolase-like protein

Probab=100.00  E-value=4e-40  Score=299.89  Aligned_cols=165  Identities=21%  Similarity=0.307  Sum_probs=144.3

Q ss_pred             eeEEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccc-h-
Q 026342           69 TDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYAD-Y-  146 (240)
Q Consensus        69 ~~v~~~~~~~~~v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~-~-  146 (240)
                      ..|.+++  +++|++||||||+++|+||.+|+.+|.++++.++.|+++++|||+|.| ++||+|+|++++....... . 
T Consensus        37 ~~V~~e~--~g~v~~ItLNRP~~lNALs~~m~~~L~~al~~~~~D~~vrvVVl~G~G-kaFcAGgDl~~l~~~~~~~~~~  113 (401)
T PLN02157         37 YQVLVEG--SGCSRTAILNRPPALNALTTHMGYRLQKLYKNWEEDPNIGFVMMKGSG-RAFCAGGDIVSLYHLRKRGSPD  113 (401)
T ss_pred             CceEEEE--ECCEEEEEECCCCccCCCCHHHHHHHHHHHHHHhhCCCCeEEEEECCC-CCccCCcCHHHHHhhccccchH
Confidence            4477877  689999999999999999999999999999999999999999999999 8999999998764311110 1 


Q ss_pred             --hhhhhhhHHHHHHHHHcCCCcEEEEECchhchhhHHHhhhcCEEEEeCCcEEecccccccccCCCchHHHHHhhcCHH
Q 026342          147 --ENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVSTV  224 (240)
Q Consensus       147 --~~~~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~a~f~~pe~~~Gl~p~~g~~~~l~rlvG~~  224 (240)
                        ..+.. ..+.+...|.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|+.|++++|+|++|. 
T Consensus       114 ~~~~~~~-~~~~l~~~i~~~pkPvIA~v~G~a~GGG~~Lal~cD~rvate~a~fa~PE~~iGl~Pd~G~s~~L~rl~G~-  191 (401)
T PLN02157        114 AIREFFS-SLYSFIYLLGTYLKPHVAILNGVTMGGGTGVSIPGTFRVATDRTIFATPETIIGFHPDAGASFNLSHLPGR-  191 (401)
T ss_pred             HHHHHHH-HHHHHHHHHHhCCCCEEEEEeCeEeehhHHHHHhCCEEEEeCCCEEEChhhhcCCCCCccHHHHHHHhhhH-
Confidence              11111 23345678999999999999999999999999999999999999999999999999999999999999995 


Q ss_pred             HHHHHHhcCCcccc
Q 026342          225 QQCLWWGLKKHVKC  238 (240)
Q Consensus       225 ~a~ellltG~~i~A  238 (240)
                      ++++|++||++|+|
T Consensus       192 ~a~~L~LTG~~i~A  205 (401)
T PLN02157        192 LGEYLGLTGLKLSG  205 (401)
T ss_pred             HHHHHHHcCCcCCH
Confidence            89999999999986

>PRK07827 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=4.9e-40  Score=285.24  Aligned_cols=166  Identities=28%  Similarity=0.433  Sum_probs=144.3

Q ss_pred             ceeEEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccch-
Q 026342           68 FTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADY-  146 (240)
Q Consensus        68 ~~~v~~~~~~~~~v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~-  146 (240)
                      ...+.++.  +++|++|+||||++.|+||.+|+.+|.++++.++.|+++|+|||+|.| ++||+|+|++++........ 
T Consensus         5 ~~~i~~~~--~~~v~~i~lnrp~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~~~~~   81 (260)
T PRK07827          5 DTLVRYAV--DGGVATLTLDSPHNRNALSARLVAQLHDGLRAAAADPAVRAVVLTHTG-GTFCAGADLSEAGGGGGDPYD   81 (260)
T ss_pred             CcceEEEe--eCCEEEEEEcCccccCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEcCC-CCccCCcChHHHhhcccCchh
Confidence            34577776  789999999999999999999999999999999999999999999999 89999999987643211111 


Q ss_pred             --hhhhhhhHHHHHHHHHcCCCcEEEEECchhchhhHHHhhhcCEEEEeCCcEEecccccccccCCCchHHHHHhhcCHH
Q 026342          147 --ENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVSTV  224 (240)
Q Consensus       147 --~~~~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~a~f~~pe~~~Gl~p~~g~~~~l~rlvG~~  224 (240)
                        ..+.. .+.++++.+..+||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++++++++++++ ..
T Consensus        82 ~~~~~~~-~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~l~-~~  159 (260)
T PRK07827         82 AAVARAR-EMTALLRAIVELPKPVIAAIDGHVRAGGFGLVGACDIVVAGPESTFALTEARIGVAPAIISLTLLPRLS-PR  159 (260)
T ss_pred             HHHHHHH-HHHHHHHHHHhCCCCEEEEEcCeeecchhhHHHhCCEEEEcCCCEEeCcccccCCCCCcccchhHHhhh-HH
Confidence              11111 345678889999999999999999999999999999999999999999999999999998899999875 57


Q ss_pred             HHHHHHhcCCcccc
Q 026342          225 QQCLWWGLKKHVKC  238 (240)
Q Consensus       225 ~a~ellltG~~i~A  238 (240)
                      +|++|+++|+.++|
T Consensus       160 ~a~~l~l~g~~~~a  173 (260)
T PRK07827        160 AAARYYLTGEKFGA  173 (260)
T ss_pred             HHHHHHHhCCccCH
Confidence            99999999999986

>PLN02851 3-hydroxyisobutyryl-CoA hydrolase-like protein

Probab=100.00  E-value=9.2e-40  Score=297.54  Aligned_cols=165  Identities=20%  Similarity=0.291  Sum_probs=145.1

Q ss_pred             eeEEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCc----c
Q 026342           69 TDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGY----A  144 (240)
Q Consensus        69 ~~v~~~~~~~~~v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~----~  144 (240)
                      +.|.+++  ++++++|+||||+++|+||.+|+.+|.++++.++.|+++++|||+|.| ++||+|+|++.+.....    .
T Consensus        42 ~~v~~e~--~~~~~~ItLNRP~~lNALs~~m~~eL~~al~~~~~D~~vrvVVL~G~G-kaFcAGgDl~~l~~~~~~~~~~  118 (407)
T PLN02851         42 DQVLVEG--RAKSRAAILNRPSSLNALTIPMVARLKRLYESWEENPDIGFVLMKGSG-RAFCSGADVVSLYHLINEGNVE  118 (407)
T ss_pred             CCeEEEE--ECCEEEEEECCCCcCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCC-CCccCCcCHHHHHhhccccchH
Confidence            4577887  689999999999999999999999999999999999999999999999 89999999987643211    1


Q ss_pred             chhhhhhhhHHHHHHHHHcCCCcEEEEECchhchhhHHHhhhcCEEEEeCCcEEecccccccccCCCchHHHHHhhcCHH
Q 026342          145 DYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVSTV  224 (240)
Q Consensus       145 ~~~~~~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~a~f~~pe~~~Gl~p~~g~~~~l~rlvG~~  224 (240)
                      ....+.+ ..+++...|.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|+.|++++|+|++|. 
T Consensus       119 ~~~~~f~-~~~~l~~~i~~~pKPvIA~v~G~amGGG~gLal~~D~rVate~a~famPE~~iGl~PdvG~s~~L~rl~g~-  196 (407)
T PLN02851        119 ECKLFFE-NLYKFVYLQGTYLKPNVAIMDGITMGCGAGISIPGMFRVVTDKTVFAHPEVQMGFHPDAGASYYLSRLPGY-  196 (407)
T ss_pred             HHHHHHH-HHHHHHHHHHhCCCCEEEEEcCEEeeHHHHHHHhCCEEEEeCCceEecchhccCCCCCccHHHHHHHhcCH-
Confidence            1111111 34566778899999999999999999999999999999999999999999999999999999999999997 


Q ss_pred             HHHHHHhcCCcccc
Q 026342          225 QQCLWWGLKKHVKC  238 (240)
Q Consensus       225 ~a~ellltG~~i~A  238 (240)
                      .+++|++||++|+|
T Consensus       197 ~g~~L~LTG~~i~a  210 (407)
T PLN02851        197 LGEYLALTGQKLNG  210 (407)
T ss_pred             HHHHHHHhCCcCCH
Confidence            49999999999986

>PRK06495 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.2e-39  Score=282.33  Aligned_cols=164  Identities=29%  Similarity=0.390  Sum_probs=141.5

Q ss_pred             ceeEEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccchh
Q 026342           68 FTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYE  147 (240)
Q Consensus        68 ~~~v~~~~~~~~~v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~~  147 (240)
                      |+.|.+++  +++|++|+||||+ .|+||.+|+.+|.++++.+++|+++|+|||+|.| ++||+|+|++++.........
T Consensus         3 ~~~i~~~~--~~~v~~itlnrp~-~Nal~~~~~~~l~~al~~~~~d~~vr~vVl~g~g-~~FcaG~Dl~~~~~~~~~~~~   78 (257)
T PRK06495          3 MSQLKLEV--SDHVAVVTLDNPP-VNALSRELRDELIAVFDEISERPDVRVVVLTGAG-KVFCAGADLKGRPDVIKGPGD   78 (257)
T ss_pred             cceEEEEe--eCCEEEEEECCCc-cccCCHHHHHHHHHHHHHHhhCCCceEEEEECCC-CCcccCcCHHhHhhccCCchh
Confidence            55688887  7899999999998 5999999999999999999999999999999999 899999999876432111111


Q ss_pred             -hhhhhhHHHHHHHHHcCCCcEEEEECchhchhhHHHhhhcCEEEEeCCcEEecccccccccCCCchHHHHHhhcCHHHH
Q 026342          148 -NFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVSTVQQ  226 (240)
Q Consensus       148 -~~~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~a~f~~pe~~~Gl~p~~g~~~~l~rlvG~~~a  226 (240)
                       ........+++.++.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++   +++++|++++|+.+|
T Consensus        79 ~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~---~~~~~l~~~~g~~~a  155 (257)
T PRK06495         79 LRAHNRRTRECFHAIRECAKPVIAAVNGPALGAGLGLVASCDIIVASENAVFGLPEIDVGLA---GGGKHAMRLFGHSLT  155 (257)
T ss_pred             HHHHHHHHHHHHHHHHhCCCCEEEEECCeeehhHHHHHHhCCEEEecCCCEeeChhhccCcc---ccHHHHHHHhCHHHH
Confidence             1111123567788999999999999999999999999999999999999999999999986   356789999999999


Q ss_pred             HHHHhcCCcccc
Q 026342          227 CLWWGLKKHVKC  238 (240)
Q Consensus       227 ~ellltG~~i~A  238 (240)
                      ++|+++|+.++|
T Consensus       156 ~~lll~g~~~~a  167 (257)
T PRK06495        156 RRMMLTGYRVPA  167 (257)
T ss_pred             HHHHHcCCeeCH
Confidence            999999999987

>PRK08788 enoyl-CoA hydratase; Validated

Probab=100.00  E-value=1.8e-39  Score=284.77  Aligned_cols=173  Identities=18%  Similarity=0.130  Sum_probs=143.0

Q ss_pred             CCcceeEEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhh-----CCCeeEEEEeeCCCCCcccCCCccccc
Q 026342           65 GTEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARD-----DSSVGVIILTGKGTEAFCSGGDQALRT  139 (240)
Q Consensus        65 ~~~~~~v~~~~~~~~~v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~-----d~~v~vvVltg~g~~~FcaG~Dl~~~~  139 (240)
                      ...+++++++.+.+++|++|+|| |+++|+||.+|+.+|.++++++++     |+++|+|||+|.++++||+|+|++++.
T Consensus        11 ~~~~~~~~i~~e~~~~ia~itl~-p~~~Nal~~~~~~eL~~al~~~~~~~~~~d~~vrvVVltg~~gk~FcaG~Dl~~~~   89 (287)
T PRK08788         11 AGELSQLRVYYEEERNVMWMYMR-AQPRPCFNLELLDDIMNLQRAIRQRLDDSGLPVDFWVLASDVPGVFNLGGDLALFA   89 (287)
T ss_pred             ccccCceEEEEEccCCEEEEEEC-CCCCCCCCHHHHHHHHHHHHHHHhhccCCCCCeEEEEEEcCCCCceEeCcCHHHHh
Confidence            34566666665558999999996 999999999999999999999998     899999999999438999999998754


Q ss_pred             cCC-ccchhhhh--hhhHHHHHHHHH---cCCCcEEEEECchhchhhHHHhhhcCEEEEeCCcEEecccccccccCCCch
Q 026342          140 RDG-YADYENFG--RLNVLDLQVQIR---RLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYG  213 (240)
Q Consensus       140 ~~~-~~~~~~~~--~~~~~~l~~~i~---~~~kP~IAav~G~a~GgG~~lal~~D~rias~~a~f~~pe~~~Gl~p~~g~  213 (240)
                      ... ........  ...+.+.+.++.   .+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|+
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~pkPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pev~lGl~p~~g~  169 (287)
T PRK08788         90 ELIRAGDRDALLAYARACVDGVHAFHRGFGAGAISIALVQGDALGGGFEAALSHHTIIAERGAKMGFPEILFNLFPGMGA  169 (287)
T ss_pred             hhccccchHHHHHHHHHHHHHHHHHHHhcCCCCCEEEEECCeeehHHHHHHHhCCEEEecCCCEeeCchhhhCcCCCchH
Confidence            210 11111110  001222333333   799999999999999999999999999999999999999999999999989


Q ss_pred             HHHHHhhcCHHHHHHHHhcCCcccc
Q 026342          214 SSIMSRLVSTVQQCLWWGLKKHVKC  238 (240)
Q Consensus       214 ~~~l~rlvG~~~a~ellltG~~i~A  238 (240)
                      +++|++++|..+|++|+++|+.|+|
T Consensus       170 ~~~l~~~vG~~~A~ellltG~~l~A  194 (287)
T PRK08788        170 YSFLARRVGPKLAEELILSGKLYTA  194 (287)
T ss_pred             HHHHHHHhhHHHHHHHHHcCCCCCH
Confidence            9999999999999999999999986

>PRK08290 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=2.2e-39  Score=285.01  Aligned_cols=167  Identities=31%  Similarity=0.431  Sum_probs=141.9

Q ss_pred             cceeEEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCc---
Q 026342           67 EFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGY---  143 (240)
Q Consensus        67 ~~~~v~~~~~~~~~v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~---  143 (240)
                      +++.|.++.  +++|++|+||||+++|+||.+|+.+|.+++++++.|+++|+|||||.| ++||+|+|++++.....   
T Consensus         2 ~~~~v~~~~--~~~Va~ItlnrP~~~Nal~~~~~~eL~~~l~~~~~d~~vrvvVltg~G-~~FcaG~Dl~~~~~~~~~~~   78 (288)
T PRK08290          2 EYEYVRYEV--AGRIARITLNRPEARNAQNRQMLYELDAAFRRAEADDAVRVIVLAGAG-KHFSAGHDLGSGTPGRDRDP   78 (288)
T ss_pred             CCceEEEEe--eCCEEEEEecCccccCCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCC-CccccCCCcccccccccccc
Confidence            355688887  799999999999999999999999999999999999999999999999 89999999987531110   


Q ss_pred             ---------------cchh-hhh--hhhHHHHHHHHHcCCCcEEEEECchhchhhHHHhhhcCEEEEeCCcEEecccccc
Q 026342          144 ---------------ADYE-NFG--RLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKV  205 (240)
Q Consensus       144 ---------------~~~~-~~~--~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~a~f~~pe~~~  205 (240)
                                     .... ...  ...+.+++..+.++|||+||+|||+|+|||++|+++||||||+++++|++||+++
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pkPvIAaVnG~a~GgG~~lalacD~ria~e~a~f~~pe~~l  158 (288)
T PRK08290         79 GPDQHPTLWWDGATKPGVEQRYAREWEVYLGMCRRWRDLPKPTIAQVQGACIAGGLMLAWVCDLIVASDDAFFSDPVVRM  158 (288)
T ss_pred             ccccccccccccccccchhhHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeeHHHHHHHHhCCEEEeeCCCEecCccccc
Confidence                           0000 010  1123456678899999999999999999999999999999999999999999999


Q ss_pred             cccCCCchHHHHHhhcCHHHHHHHHhcCCcccc
Q 026342          206 GSFDAGYGSSIMSRLVSTVQQCLWWGLKKHVKC  238 (240)
Q Consensus       206 Gl~p~~g~~~~l~rlvG~~~a~ellltG~~i~A  238 (240)
                      |+ |+ .+.+++++++|.++|++|++||+.|+|
T Consensus       159 Gl-~~-~~~~~l~~~iG~~~A~~llltG~~i~A  189 (288)
T PRK08290        159 GI-PG-VEYFAHPWELGPRKAKELLFTGDRLTA  189 (288)
T ss_pred             Cc-Cc-chHHHHHHHhhHHHHHHHHHcCCCCCH
Confidence            98 43 456778999999999999999999986

>PLN02874 3-hydroxyisobutyryl-CoA hydrolase-like protein

Probab=100.00  E-value=1.1e-39  Score=296.35  Aligned_cols=169  Identities=24%  Similarity=0.261  Sum_probs=145.2

Q ss_pred             CcceeEEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccc
Q 026342           66 TEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYAD  145 (240)
Q Consensus        66 ~~~~~v~~~~~~~~~v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~  145 (240)
                      +.+..|.++.  +++|++|+||||+++|+||.+|+.+|.++|+.++.|++||+|||+|.| ++||+|+|++++.......
T Consensus         8 ~~~~~v~~~~--~~~v~~ItLnrP~~~Nal~~~m~~eL~~al~~~~~d~~vrvvVl~g~g-~~FcaG~Dl~~~~~~~~~~   84 (379)
T PLN02874          8 PAEEVVLGEE--KGRVRVITLNRPRQLNVISLSVVSLLAEFLEQWEKDDSVELIIIKGAG-RAFSAGGDLKMFYDGRESD   84 (379)
T ss_pred             CCCCceEEEE--ECCEEEEEECCCccccCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCC-CCccCccCHHHHHhhcccc
Confidence            4455678876  799999999999999999999999999999999999999999999999 7999999998764221111


Q ss_pred             hh-hhhhhhHHHHHHHHHcCCCcEEEEECchhchhhHHHhhhcCEEEEeCCcEEecccccccccCCCchHHHHHhhcCHH
Q 026342          146 YE-NFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVSTV  224 (240)
Q Consensus       146 ~~-~~~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~a~f~~pe~~~Gl~p~~g~~~~l~rlvG~~  224 (240)
                      .. .........+..+|.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|. 
T Consensus        85 ~~~~~~~~~~~~l~~~i~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pe~~iGl~p~~g~~~~L~rl~g~-  163 (379)
T PLN02874         85 DSCLEVVYRMYWLCYHIHTYKKTQVALVHGLVMGGGAGLMVPMKFRVVTEKTVFATPEASVGFHTDCGFSYILSRLPGH-  163 (379)
T ss_pred             hHHHHHHHHHHHHHHHHHhCCCCEEEEecCeEEecHHHHHHhCCeEEEeCCeEEeccccccCcCCChhHHHHHHhhhHH-
Confidence            11 0011122345678899999999999999999999999999999999999999999999999999999999999885 


Q ss_pred             HHHHHHhcCCcccc
Q 026342          225 QQCLWWGLKKHVKC  238 (240)
Q Consensus       225 ~a~ellltG~~i~A  238 (240)
                      ++++|+|||++|+|
T Consensus       164 ~a~~l~ltG~~i~a  177 (379)
T PLN02874        164 LGEYLALTGARLNG  177 (379)
T ss_pred             HHHHHHHcCCcccH
Confidence            89999999999986

>PF00378 ECH: Enoyl-CoA hydratase/isomerase family; InterPro: IPR001753 The crotonase superfamily is comprised of mechanistically diverse proteins that share a conserved trimeric quaternary structure (sometimes a hexamer consisting of a dimer of trimers), the core of which consists of 4 turns of a (beta/beta/alpha)n superhelix

Probab=100.00  E-value=4.7e-40  Score=282.75  Aligned_cols=162  Identities=34%  Similarity=0.589  Sum_probs=145.1

Q ss_pred             EEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccchhhhhhh
Q 026342           73 YEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRL  152 (240)
Q Consensus        73 ~~~~~~~~v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~  152 (240)
                      |+.  +++|++|+||||++.|+||.+++.+|.++|+.++.|+++|+||++|.| ++||+|.|++++..........+. .
T Consensus         2 ~~~--~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvv~~~~~-~~F~~G~Dl~~~~~~~~~~~~~~~-~   77 (245)
T PF00378_consen    2 YEI--EDGVATITLNRPEKRNALNPEMLDELEEALDEAEADPDVKVVVISGGG-KAFCAGADLKEFLNSDEEEAREFF-R   77 (245)
T ss_dssp             EEE--ETTEEEEEEECGGGTTEBSHHHHHHHHHHHHHHHHSTTESEEEEEEST-SESBESB-HHHHHHHHHHHHHHHH-H
T ss_pred             EEE--ECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHhcCCccEEEEeecc-cccccccchhhhhccccccccccc-h
Confidence            455  799999999999999999999999999999999999999999999988 899999999877654111112222 2


Q ss_pred             hHHHHHHHHHcCCCcEEEEECchhchhhHHHhhhcCEEEEeCCcEEecccccccccCCCchHHHHHhhcCHHHHHHHHhc
Q 026342          153 NVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVSTVQQCLWWGL  232 (240)
Q Consensus       153 ~~~~l~~~i~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~a~f~~pe~~~Gl~p~~g~~~~l~rlvG~~~a~elllt  232 (240)
                      .+.+++.++..+|||+||+|||+|+|+|++|+++||+|||+++++|++||+++|++|+++++++|+|++|.++|++++++
T Consensus        78 ~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~r~~g~~~a~~l~l~  157 (245)
T PF00378_consen   78 RFQELLSRLANFPKPTIAAVNGHAVGGGFELALACDFRIAAEDAKFGFPEVRLGIFPGAGGTFRLPRLIGPSRARELLLT  157 (245)
T ss_dssp             HHHHHHHHHHHSSSEEEEEESSEEETHHHHHHHHSSEEEEETTTEEETGGGGGTSSSTSTHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhccccccchhhhhheeecccccccccccccccccceEEeecccceeeeecccCcccccccccccceeeecccccccccc
Confidence            46788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcccc
Q 026342          233 KKHVKC  238 (240)
Q Consensus       233 G~~i~A  238 (240)
                      |+.|+|
T Consensus       158 g~~~~a  163 (245)
T PF00378_consen  158 GEPISA  163 (245)
T ss_dssp             TCEEEH
T ss_pred             cccchh
Confidence            999986

Some enzymes in the superfamily have been shown to display dehalogenase, hydratase, and isomerase activities, while others have been implicated in carbon-carbon bond formation and cleavage as well as the hydrolysis of thioesters []. However, these different enzymes share the need to stabilise an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two structurally conserved peptidic NH groups that provide hydrogen bonds to the carbonyl moieties of the acyl-CoA substrates and form an "oxyanion hole". The CoA thioester derivatives bind in a characteristic hooked shape and a conserved tunnel binds the pantetheine group of CoA, which links the 3'-phosphate ADP binding site to the site of reaction []. Enzymes in the crotonase superfamily include: Enoyl-CoA hydratase (crotonase; 4.2.1.17 from EC), which catalyses the hydratation of 2-trans-enoyl-CoA into 3-hydroxyacyl-CoA []. 3-2trans-enoyl-CoA isomerase (or dodecenoyl-CoA isomerise; 5.3.3.8 from EC), which shifts the 3-double bond of the intermediates of unsaturated fatty acid oxidation to the 2-trans position []. 3-hydroxbutyryl-CoA dehydratase (crotonase; 4.2.1.55 from EC), a bacterial enzyme involved in the butyrate/butanol-producing pathway. 4-Chlorobenzoyl-CoA dehalogenase (3.8.1.6 from EC), a Pseudomonas enzyme which catalyses the conversion of 4-chlorobenzoate-CoA to 4-hydroxybenzoate-CoA []. Dienoyl-CoA isomerise, which catalyses the isomerisation of 3-trans,5-cis-dienoyl-CoA to 2-trans,4-trans-dienoyl-CoA []. Naphthoate synthase (MenB, or DHNA synthetase; 4.1.3.36 from EC), a bacterial enzyme involved in the biosynthesis of menaquinone (vitamin K2) []. Carnitine racemase (gene caiD), which catalyses the reversible conversion of crotonobetaine to L-carnitine in Escherichia coli []. Methylmalonyl CoA decarboxylase (MMCD; 4.1.1.41 from EC), which has a hexameric structure (dimer of trimers) []. Carboxymethylproline synthase (CarB), which is involved in carbapenem biosynthesis []. 6-oxo camphor hydrolase, which catalyses the desymmetrisation of bicyclic beta-diketones to optically active keto acids []. The alpha subunit of fatty oxidation complex, a multi-enzyme complex that catalyses the last three reactions in the fatty acid beta-oxidation cycle []. AUH protein, a bifunctional RNA-binding homologue of enoyl-CoA hydratase []. This entry represents the core domain found in crotonase superfamily members.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2VRE_B 3RSI_A 1HZD_F 2ZQR_E 2ZQQ_D 3R9S_C 1O8U_E 1SZO_C 3MOY_A 2UZF_A ....

>PRK05617 3-hydroxyisobutyryl-CoA hydrolase; Provisional

Probab=100.00  E-value=5.4e-40  Score=295.01  Aligned_cols=165  Identities=24%  Similarity=0.396  Sum_probs=144.4

Q ss_pred             eEEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCc-c-ch-
Q 026342           70 DIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGY-A-DY-  146 (240)
Q Consensus        70 ~v~~~~~~~~~v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~-~-~~-  146 (240)
                      .|.+++  +++|++|+||||+++|+||.+|+.+|.++++.++.|+++|+|||+|.|+++||+|+|++++..... . .. 
T Consensus         4 ~v~~~~--~~~v~~itLnrP~~~Nal~~~m~~~L~~~l~~~~~d~~vrvvVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~   81 (342)
T PRK05617          4 EVLAEV--EGGVGVITLNRPKALNALSLEMIRAIDAALDAWEDDDAVAAVVIEGAGERGFCAGGDIRALYEAARAGDPLA   81 (342)
T ss_pred             eEEEEE--ECCEEEEEECCCccccCCCHHHHHHHHHHHHHHhhCCCeEEEEEEcCCCCceeCCcCHHHHHhhhccCCchh
Confidence            477777  799999999999999999999999999999999999999999999998779999999987643111 0 11 


Q ss_pred             h-hhhhhhHHHHHHHHHcCCCcEEEEECchhchhhHHHhhhcCEEEEeCCcEEecccccccccCCCchHHHHHhhcCHHH
Q 026342          147 E-NFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVSTVQ  225 (240)
Q Consensus       147 ~-~~~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~a~f~~pe~~~Gl~p~~g~~~~l~rlvG~~~  225 (240)
                      . ...+ ...+++.++.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++| .+
T Consensus        82 ~~~~~~-~~~~~~~~i~~~~kPvIAaVnG~a~GgG~~LalacD~ria~~~a~f~~pe~~lGl~P~~g~~~~L~r~~g-~~  159 (342)
T PRK05617         82 ADRFFR-EEYRLNALIARYPKPYIALMDGIVMGGGVGISAHGSHRIVTERTKMAMPETGIGFFPDVGGTYFLSRAPG-AL  159 (342)
T ss_pred             HHHHHH-HHHHHHHHHHhCCCCEEEEEcCEEEccHhHHhhhCCEEEEcCCCEeeCCccccCcCCCccceeEehhccc-HH
Confidence            0 1111 2345678899999999999999999999999999999999999999999999999999999999999877 78


Q ss_pred             HHHHHhcCCcccc
Q 026342          226 QCLWWGLKKHVKC  238 (240)
Q Consensus       226 a~ellltG~~i~A  238 (240)
                      |++|++||+.|+|
T Consensus       160 a~~llltG~~i~A  172 (342)
T PRK05617        160 GTYLALTGARISA  172 (342)
T ss_pred             HHHHHHcCCCCCH
Confidence            9999999999986

>PRK07112 polyketide biosynthesis enoyl-CoA hydratase; Validated

Probab=100.00  E-value=1.9e-39  Score=280.92  Aligned_cols=165  Identities=19%  Similarity=0.268  Sum_probs=141.7

Q ss_pred             ceeEEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccchh
Q 026342           68 FTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYE  147 (240)
Q Consensus        68 ~~~v~~~~~~~~~v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~~  147 (240)
                      |+.+.++.  +++|++|+||||++.|+||.+|+.+|.++++.++  +++|+|||+|.| ++||+|+|++++.........
T Consensus         3 ~~~i~~~~--~~~i~~itlnrp~~~Nal~~~~~~~L~~~l~~~~--~~vr~vVl~g~g-~~FsaG~Dl~~~~~~~~~~~~   77 (255)
T PRK07112          3 YQTIRVRQ--QGDVCFLQLHRPEAQNTINDRLIAECMDVLDRCE--HAATIVVLEGLP-EVFCFGADFSAIAEKPDAGRA   77 (255)
T ss_pred             CceEEEEe--eCCEEEEEEcCCCccCCCCHHHHHHHHHHHHHhh--cCceEEEEEcCC-CCcccCcCHHHHhhccccchh
Confidence            55688887  7899999999999999999999999999999998  359999999999 799999999976432111111


Q ss_pred             -hhhhhhHHHHHHHHHcCCCcEEEEECchhchhhHHHhhhcCEEEEeCCcEEecccccccccCCCchHHHHHhhcCHHHH
Q 026342          148 -NFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVSTVQQ  226 (240)
Q Consensus       148 -~~~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~a~f~~pe~~~Gl~p~~g~~~~l~rlvG~~~a  226 (240)
                       ........+++.++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++ ++.+|++++|..+|
T Consensus        78 ~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~-~~~~l~~~vg~~~a  156 (255)
T PRK07112         78 DLIDAEPLYDLWHRLATGPYVTIAHVRGKVNAGGIGFVAASDIVIADETAPFSLSELLFGLIPAC-VLPFLIRRIGTQKA  156 (255)
T ss_pred             hhhhHHHHHHHHHHHHcCCCCEEEEEecEEEcchhHHHHcCCEEEEcCCCEEeCchhhhccCcch-hhHHHHHHhCHHHH
Confidence             1111123467788999999999999999999999999999999999999999999999999875 56789999999999


Q ss_pred             HHHHhcCCcccc
Q 026342          227 CLWWGLKKHVKC  238 (240)
Q Consensus       227 ~ellltG~~i~A  238 (240)
                      ++|+++|+.++|
T Consensus       157 ~~l~l~g~~~~a  168 (255)
T PRK07112        157 HYMTLMTQPVTA  168 (255)
T ss_pred             HHHHHhCCcccH
Confidence            999999999986

>PLN03214 probable enoyl-CoA hydratase/isomerase; Provisional

Probab=100.00  E-value=3.2e-39  Score=282.60  Aligned_cols=168  Identities=15%  Similarity=0.220  Sum_probs=143.4

Q ss_pred             ceeEEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCC-CCcccCCCccccccCCccc-
Q 026342           68 FTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGT-EAFCSGGDQALRTRDGYAD-  145 (240)
Q Consensus        68 ~~~v~~~~~~~~~v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~-~~FcaG~Dl~~~~~~~~~~-  145 (240)
                      .+.|.+++. +++|++||||||+ .|+||.+|+.+|.++++++++|+++|+|||||.|+ ++||+|+|++++....... 
T Consensus        10 ~~~i~~~~~-~~~Va~itlnr~~-~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~~~FcaG~Dl~~~~~~~~~~~   87 (278)
T PLN03214         10 TPGVRVDRR-PGGIAVVWLAKEP-VNSMTLAMWRSLDDALTALENDPTVRGVVFASGLRRDVFTAGNDIAELYAPKTSAA   87 (278)
T ss_pred             CCceEEEEc-CCCEEEEEECCCC-CCCCCHHHHHHHHHHHHHHHcCCCceEEEEeCCCCCCcccCccCHHHHhccccchH
Confidence            346777762 4899999999985 79999999999999999999999999999999873 6999999998764211111 


Q ss_pred             -hhhhhhhhHHHHHHHHHcCCCcEEEEECchhchhhHHHhhhcCEEEEeCCcEEecccccccc-cCCCchHHHHHhhcCH
Q 026342          146 -YENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGS-FDAGYGSSIMSRLVST  223 (240)
Q Consensus       146 -~~~~~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~a~f~~pe~~~Gl-~p~~g~~~~l~rlvG~  223 (240)
                       ...+.. ...+++.++.++||||||+|||+|+|||++|+++|||||++++++|++||+++|+ +|+.+++++|++++|+
T Consensus        88 ~~~~~~~-~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~lalacD~ria~~~a~f~~pe~~lGl~~p~~~~~~~l~~~~G~  166 (278)
T PLN03214         88 RYAEFWL-TQTTFLVRLLRSRLATVCAIRGACPAGGCAVSLCCDYRLQTTEGTMGLNEVALGIPVPKFWARLFMGRVIDR  166 (278)
T ss_pred             HHHHHHH-HHHHHHHHHHcCCCCEEEEEcCcccchHHHHHHhCCEEEecCCCEecCcHHHhCCCCCChhHHHHHHHhcCH
Confidence             111111 1245677899999999999999999999999999999999999999999999999 5888888999999999


Q ss_pred             HHHHHHHhcCCcccc
Q 026342          224 VQQCLWWGLKKHVKC  238 (240)
Q Consensus       224 ~~a~ellltG~~i~A  238 (240)
                      .+|++|+++|+.|+|
T Consensus       167 ~~a~~llltg~~~~a  181 (278)
T PLN03214        167 KVAESLLLRGRLVRP  181 (278)
T ss_pred             HHHHHHHHcCCccCH
Confidence            999999999999986

>PRK07938 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=2.6e-39  Score=279.07  Aligned_cols=156  Identities=24%  Similarity=0.275  Sum_probs=135.3

Q ss_pred             CCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccchhhhhhhhHHHH
Q 026342           78 GEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDL  157 (240)
Q Consensus        78 ~~~v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l  157 (240)
                      +++|++|+||||+ .|+|+.+|+.+|.++++.++.|+++|+|||+|.| ++||+|+|++++.................++
T Consensus         9 ~~~v~~itlnrp~-~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~G-~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~   86 (249)
T PRK07938          9 EPGIAEVTVDYPP-VNALPSAGWFALADAITAAGADPDTRVVVLRAEG-RGFNAGVDIKELQATPGFTALIDANRGCFAA   86 (249)
T ss_pred             CCCEEEEEECCCC-cccCCHHHHHHHHHHHHHhhcCCCeEEEEEECCC-CceecCcCHHHHhhccchhHHHHHHHHHHHH
Confidence            7899999999998 5999999999999999999999999999999999 8999999998754321111100011123466


Q ss_pred             HHHHHcCCCcEEEEECchhchhhHHHhhhcCEEEEeCCcEEecccccccccCCCchHHHHHhhcCHHHHHHHHhcCCccc
Q 026342          158 QVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVSTVQQCLWWGLKKHVK  237 (240)
Q Consensus       158 ~~~i~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~a~f~~pe~~~Gl~p~~g~~~~l~rlvG~~~a~ellltG~~i~  237 (240)
                      +..+.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|++   +++++|++++|+.+|++|+++|+.|+
T Consensus        87 ~~~i~~~~kPvIAav~G~a~GgG~~Lal~cD~ria~~~a~f~~pe~~~G~~---g~~~~l~~~vg~~~a~~l~ltg~~~~  163 (249)
T PRK07938         87 FRAVYECAVPVIAAVHGFCLGGGIGLVGNADVIVASDDATFGLPEVDRGAL---GAATHLQRLVPQHLMRALFFTAATIT  163 (249)
T ss_pred             HHHHHhCCCCEEEEEcCEEeehHHHHHHhCCEEEEeCCCEeeCccceecCc---hhHHHHHHhcCHHHHHHHHHhCCcCC
Confidence            778999999999999999999999999999999999999999999999986   35678999999999999999999998


Q ss_pred             c
Q 026342          238 C  238 (240)
Q Consensus       238 A  238 (240)
                      |
T Consensus       164 a  164 (249)
T PRK07938        164 A  164 (249)
T ss_pred             H
Confidence            6

>TIGR03200 dearomat_oah 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase

Probab=100.00  E-value=4.5e-39  Score=286.38  Aligned_cols=158  Identities=30%  Similarity=0.430  Sum_probs=138.3

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccchhhh--hhhhHHHHH
Q 026342           81 IAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENF--GRLNVLDLQ  158 (240)
Q Consensus        81 v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~~~~--~~~~~~~l~  158 (240)
                      +++|+||||+++|+|+.+|+.+|.++++.++.|+++++|||||.|+++||+|+|++++...........  ....+.+++
T Consensus        38 ~A~ItLNRP~k~NAls~~ml~eL~~al~~~~~D~dVrvVVLTG~G~kaFCAG~DLke~~~~~~~~~~~~~~~~~~~~~l~  117 (360)
T TIGR03200        38 NAWIILDNPKQYNSYTTDMVKAIILAFRRASSDRDVVAVVFTAVGDKAFCTGGNTKEYAEYYAGNPQEYRQYMRLFNDMV  117 (360)
T ss_pred             EEEEEECCCCccCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCCcccCCcCHHHHhhhcccChhHHHHHHHHHHHHH
Confidence            356999999999999999999999999999999999999999999669999999987643211011111  111234667


Q ss_pred             HHHHcCCCcEEEEECchhchhhHHHhhhcCEEEEeCCcEEecccccccccCCCchHHHHHhhcCHHHHHHHHhcCCcccc
Q 026342          159 VQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVSTVQQCLWWGLKKHVKC  238 (240)
Q Consensus       159 ~~i~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~a~f~~pe~~~Gl~p~~g~~~~l~rlvG~~~a~ellltG~~i~A  238 (240)
                      .++..++|||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..+|++|+++|+.|+|
T Consensus       118 ~~i~~~pKPVIAAVnG~AiGGGleLALaCDlrIAse~A~Fg~PE~rlGl~P~~Ggt~rLprlvG~~rA~~llltGe~~sA  197 (360)
T TIGR03200       118 SAILGCDKPVICRVNGMRIGGGQEIGMAADFTIAQDLANFGQAGPKHGSAPIGGATDFLPLMIGCEQAMVSGTLCEPWSA  197 (360)
T ss_pred             HHHHhCCCCEEEEECCEeeeHHHHHHHhCCEEEEcCCCEEeCchhccCCCCCccHHHHHHHhhCHHHHHHHHHhCCcCcH
Confidence            78999999999999999999999999999999999999999999999999999999999999999999999999999986

Members of this protein family are 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase, a ring-hydrolyzing enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.

>PLN02988 3-hydroxyisobutyryl-CoA hydrolase

Probab=100.00  E-value=5.4e-39  Score=291.34  Aligned_cols=164  Identities=27%  Similarity=0.393  Sum_probs=142.6

Q ss_pred             eEEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccc----
Q 026342           70 DIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYAD----  145 (240)
Q Consensus        70 ~v~~~~~~~~~v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~----  145 (240)
                      .|.++.  +++|++|+||||+++|+||.+|+.+|.++|+.++.|++|++|||+|.| ++||+|+|++++.......    
T Consensus        10 ~v~~~~--~~~i~~ItLnRP~~lNALs~~m~~~L~~al~~~~~d~~v~~VVl~G~G-~~FcAGgDl~~l~~~~~~~~~~~   86 (381)
T PLN02988         10 QVLVEE--KSSVRILTLNRPKQLNALSFHMISRLLQLFLAFEEDPSVKLVILKGHG-RAFCAGGDVAAVVRDIEQGNWRL   86 (381)
T ss_pred             ceEEEE--ECCEEEEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCeeEEEEECCC-CCcccCcCHHHHHhhhcccchhH
Confidence            477776  699999999999999999999999999999999999999999999999 7999999998764211111    


Q ss_pred             hhhhhhhhHHHHHHHHHcCCCcEEEEECchhchhhHHHhhhcCEEEEeCCcEEecccccccccCCCchHHHHHhhcCHHH
Q 026342          146 YENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVSTVQ  225 (240)
Q Consensus       146 ~~~~~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~a~f~~pe~~~Gl~p~~g~~~~l~rlvG~~~  225 (240)
                      ...+.. ..+.+...|.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|+.|++++|+|++|. .
T Consensus        87 ~~~~f~-~~~~l~~~i~~~pKPvIa~v~G~a~GGG~~Lal~~D~rvate~a~f~mPE~~iGl~Pd~G~s~~L~rl~G~-~  164 (381)
T PLN02988         87 GANFFS-DEYMLNYVMATYSKAQVSILNGIVMGGGAGVSVHGRFRIATENTVFAMPETALGLFPDVGASYFLSRLPGF-F  164 (381)
T ss_pred             HHHHHH-HHHHHHHHHHHCCCCEEEEecCeEeehhhHHhhcCCeEEEcCCcEEeChhhhcCcCCCccHHHHHHHHHHH-H
Confidence            011111 12234567899999999999999999999999999999999999999999999999999999999999997 6


Q ss_pred             HHHHHhcCCcccc
Q 026342          226 QCLWWGLKKHVKC  238 (240)
Q Consensus       226 a~ellltG~~i~A  238 (240)
                      +++|+|||++++|
T Consensus       165 ~~~l~LTG~~i~a  177 (381)
T PLN02988        165 GEYVGLTGARLDG  177 (381)
T ss_pred             HHHHHHcCCCCCH
Confidence            9999999999986

>PRK08272 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=9.5e-39  Score=282.75  Aligned_cols=167  Identities=27%  Similarity=0.401  Sum_probs=141.4

Q ss_pred             CcceeEEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCcc-
Q 026342           66 TEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYA-  144 (240)
Q Consensus        66 ~~~~~v~~~~~~~~~v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~-  144 (240)
                      .+++.|.++.  +++|++|+||||+++|+||.+|+.+|.++|++++.|+++|+|||+|.| ++||+|+|++++...... 
T Consensus         7 ~~~~~v~~e~--~~~V~~Itlnrp~~~Nal~~~m~~eL~~al~~~~~d~~vrvvVl~G~G-~~FcaG~Dl~~~~~~~~~~   83 (302)
T PRK08272          7 DNLKTMTYEV--TGRIARITLNRPEKGNAITADTPLELRAAVERADLDPGVHVILVSGAG-KGFCAGYDLSAYAEGSSSG   83 (302)
T ss_pred             CCCCeEEEEe--ECCEEEEEecCccccCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCC-CCcccCcCHHHHhhccccc
Confidence            4567788887  689999999999999999999999999999999999999999999999 899999999876432110 


Q ss_pred             ---c----------------hh---hh-hhhhHHHHHHHHHcCCCcEEEEECchhchhhHHHhhhcCEEEEeCCcEEecc
Q 026342          145 ---D----------------YE---NF-GRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQT  201 (240)
Q Consensus       145 ---~----------------~~---~~-~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~a~f~~p  201 (240)
                         .                ..   .+ ....+.+++.++.++|||+||+|||+|+|||++|+++||+|||+++++|++|
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~lalacD~~ias~~a~f~~p  163 (302)
T PRK08272         84 GGGGAYPGKRQAVNHLPDDPWDPMIDYQMMSRFVRGFMSLWHAHKPTVAKVHGYCVAGGTDIALHCDQVIAADDAKIGYP  163 (302)
T ss_pred             ccccccccccccccccccccccchhhHHHHHHHHHHHHHHHhCCCCEEEEEccEeehhhHHHHHhCCEEEEeCCCEecCc
Confidence               0                00   00 0112345677899999999999999999999999999999999999999999


Q ss_pred             cccccccCCCchHHHHHhhcCHHHHHHHHhcCCcccc
Q 026342          202 GPKVGSFDAGYGSSIMSRLVSTVQQCLWWGLKKHVKC  238 (240)
Q Consensus       202 e~~~Gl~p~~g~~~~l~rlvG~~~a~ellltG~~i~A  238 (240)
                      |+++|.+|+.   ..+++++|.++|++|++||+.|+|
T Consensus       164 e~~~gg~~~~---~~~~~~vG~~~A~~llltG~~i~a  197 (302)
T PRK08272        164 PTRVWGVPAT---GMWAYRLGPQRAKRLLFTGDCITG  197 (302)
T ss_pred             chhcccCChH---HHHHHHhhHHHHHHHHHcCCccCH
Confidence            9998666643   357889999999999999999986

>PRK12478 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.3e-38  Score=281.16  Aligned_cols=164  Identities=29%  Similarity=0.415  Sum_probs=135.5

Q ss_pred             ceeEEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccc-ccc---C--
Q 026342           68 FTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQAL-RTR---D--  141 (240)
Q Consensus        68 ~~~v~~~~~~~~~v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~-~~~---~--  141 (240)
                      ++.|.+++  +++|++|+||||+++|+||.+|+.+|.++|++++.|++||+|||||.| ++||+|+|+++ +..   .  
T Consensus         4 ~~~v~~~~--~~~Va~ItLnrP~~~NAl~~~~~~eL~~al~~~~~d~~vrvvVLtG~G-~~FcaG~Dl~~~~~~~~~~~~   80 (298)
T PRK12478          4 FQTLLYTT--AGPVATITLNRPEQLNTIVPPMPDEIEAAIGLAERDQDIKVIVLRGAG-RAFSGGYDFGGGFQHWGEAMM   80 (298)
T ss_pred             ceEEEEec--cCCEEEEEecCCcccCCCCHHHHHHHHHHHHHHhcCCCceEEEEECCC-CCcccCcCccccccccchhcc
Confidence            45678876  799999999999999999999999999999999999999999999999 89999999985 211   0  


Q ss_pred             --Cc-cchhhh----hh-hhHHHHHHHHHcCCCcEEEEECchhchhhHHHhhhcCEEEEeCCcEEecccccc-cccCCCc
Q 026342          142 --GY-ADYENF----GR-LNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKV-GSFDAGY  212 (240)
Q Consensus       142 --~~-~~~~~~----~~-~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~a~f~~pe~~~-Gl~p~~g  212 (240)
                        .. .....+    .. .....++.++.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++ |+++.  
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~A~f~~pe~~l~G~~~~--  158 (298)
T PRK12478         81 TDGRWDPGKDFAMVTARETGPTQKFMAIWRASKPVIAQVHGWCVGGASDYALCADIVIASDDAVIGTPYSRMWGAYLT--  158 (298)
T ss_pred             cccccCchhhhhhhhhhhcchHHHHHHHHhCCCCEEEEEccEEehhHHHHHHHCCEEEEcCCcEEeccccccccCCch--
Confidence              00 000111    00 011234567899999999999999999999999999999999999999999997 87752  


Q ss_pred             hHHHHHhhcCHHHHHHHHhcCCcccc
Q 026342          213 GSSIMSRLVSTVQQCLWWGLKKHVKC  238 (240)
Q Consensus       213 ~~~~l~rlvG~~~a~ellltG~~i~A  238 (240)
                      +++  .+++|..+|++|+++|++|+|
T Consensus       159 ~~~--~~~vG~~~A~~llltg~~i~A  182 (298)
T PRK12478        159 GMW--LYRLSLAKVKWHSLTGRPLTG  182 (298)
T ss_pred             hHH--HHHhhHHHHHHHHHcCCccCH
Confidence            333  356999999999999999987

>COG0447 MenB Dihydroxynaphthoic acid synthase [Coenzyme metabolism]

Probab=100.00  E-value=2.3e-39  Score=265.74  Aligned_cols=173  Identities=66%  Similarity=1.057  Sum_probs=159.1

Q ss_pred             CCcceeEEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeC--CCCCcccCCCcccccc-C
Q 026342           65 GTEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGK--GTEAFCSGGDQALRTR-D  141 (240)
Q Consensus        65 ~~~~~~v~~~~~~~~~v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~--g~~~FcaG~Dl~~~~~-~  141 (240)
                      ..+|++|.|++. -++|+.|+||||+++|||.+..+.||.++|..+..|++|.||||||.  |+++||+|+|.+.... .
T Consensus        14 ~~~y~dI~Y~~~-~~giakItinRPevrNAfrP~TV~Em~~Af~~Ar~d~~vGvi~lTG~~~G~~AFCsGGDQ~vRg~~~   92 (282)
T COG0447          14 FEGYEDITYEKS-VDGIAKITINRPEVRNAFRPKTVDEMIDAFADARDDPNVGVILLTGNGDGDKAFCSGGDQKVRGDSG   92 (282)
T ss_pred             cCCcceeEEeec-cCceEEEEecChhhhccCCCccHHHHHHHHHhhhcCCCccEEEEecCCCCCeeeecCCCceecccCC
Confidence            457999999994 38999999999999999999999999999999999999999999975  7799999999987665 4


Q ss_pred             CccchhhhhhhhHHHHHHHHHcCCCcEEEEECchhchhhHHHhhhcCEEEEeCCcEEecccccccccCCCchHHHHHhhc
Q 026342          142 GYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLV  221 (240)
Q Consensus       142 ~~~~~~~~~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~a~f~~pe~~~Gl~p~~g~~~~l~rlv  221 (240)
                      .+...+...++++.++.+.|+.+||||||.|+|+|+|||..|.+.||+.||+++|+|++..+++|.|.+++|+.+|.|.+
T Consensus        93 gY~~d~~~~rLnvLdlQrlIR~~PKpViA~V~G~AiGGGhvlhvvCDLTiAa~nA~FgQTgp~VGSFD~G~Gs~ylar~V  172 (282)
T COG0447          93 GYVDDDGIPRLNVLDLQRLIRTMPKPVIAMVAGYAIGGGHVLHVVCDLTIAADNAIFGQTGPKVGSFDGGYGSSYLARIV  172 (282)
T ss_pred             CccCCccCcccchhhHHHHHHhCCcceEEEEeeEeccCccEEEEEeeeeeehhcchhcCCCCCcccccCcccHHHHHHHh
Confidence            44444445566778999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHhcCCcccc
Q 026342          222 STVQQCLWWGLKKHVKC  238 (240)
Q Consensus       222 G~~~a~ellltG~~i~A  238 (240)
                      |.++|+|+++.++.++|
T Consensus       173 GqKkArEIwfLcR~Y~A  189 (282)
T COG0447         173 GQKKAREIWFLCRQYDA  189 (282)
T ss_pred             hhhhhHHhhhhhhhccH
Confidence            99999999999999987

>PLN02267 enoyl-CoA hydratase/isomerase family protein

Probab=100.00  E-value=8.9e-38  Score=268.00  Aligned_cols=164  Identities=19%  Similarity=0.263  Sum_probs=136.7

Q ss_pred             EEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCee-EEEEeeCCCCCcccCCCccccccCCccchh-h
Q 026342           71 IIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVG-VIILTGKGTEAFCSGGDQALRTRDGYADYE-N  148 (240)
Q Consensus        71 v~~~~~~~~~v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~-vvVltg~g~~~FcaG~Dl~~~~~~~~~~~~-~  148 (240)
                      +.++.  +++|++|+||||++ |+|+.+|+.+|.+++++++.|++++ +||++|.| ++||+|+|++++......... .
T Consensus         2 ~~~~~--~~~v~~i~Lnrp~~-Nal~~~~~~eL~~al~~~~~d~~~~~vVV~~g~g-~~FsaG~Dl~~~~~~~~~~~~~~   77 (239)
T PLN02267          2 CTLEK--RGNLFILTLTGDGE-HRLNPTLIDSIRSALRQVKSQATPGSVLITTAEG-KFFSNGFDLAWAQAAGSAPSRLH   77 (239)
T ss_pred             ceeEe--cCCEEEEEeCCCCc-CcCCHHHHHHHHHHHHHHHhCCCCceEEEEcCCC-CceeCCcCHHHHhccccCHHHHH
Confidence            45565  78999999999985 9999999999999999999998875 77789988 799999999875421111111 1


Q ss_pred             hhhhhHHHHHHHHHcCCCcEEEEECchhchhhHHHhhhcCEEEEe-CCcEEecccccccccCCCchHHHHHhhcCHHHH-
Q 026342          149 FGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAA-DNAIFGQTGPKVGSFDAGYGSSIMSRLVSTVQQ-  226 (240)
Q Consensus       149 ~~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~lal~~D~rias-~~a~f~~pe~~~Gl~p~~g~~~~l~rlvG~~~a-  226 (240)
                      .....+.+++.++.++||||||+|||+|+|||++|+++||+|||+ ++++|++||+++|+.++++++.+|++++|..++ 
T Consensus        78 ~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~lalacD~ria~~~~a~f~~pe~~~Gl~~p~~~~~~l~~~vG~~~a~  157 (239)
T PLN02267         78 LMVAKLRPLVADLISLPMPTIAAVTGHASAAGFILALSHDYVLMRKDRGVLYMSEVDIGLPLPDYFMALLRAKIGSPAAR  157 (239)
T ss_pred             HHHHHHHHHHHHHhcCCCCEEEEECCcchHHHHHHHHHCCEEEecCCCCeEeccccccCCCCChHHHHHHHHHcChHHHH
Confidence            111134567788999999999999999999999999999999998 568999999999997445568899999999999 


Q ss_pred             HHHHhcCCcccc
Q 026342          227 CLWWGLKKHVKC  238 (240)
Q Consensus       227 ~ellltG~~i~A  238 (240)
                      ++|+++|+.|+|
T Consensus       158 ~~llltG~~~~a  169 (239)
T PLN02267        158 RDVLLRAAKLTA  169 (239)
T ss_pred             HHHHHcCCcCCH
Confidence            699999999986

>PRK06213 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=2e-37  Score=264.25  Aligned_cols=161  Identities=20%  Similarity=0.216  Sum_probs=139.7

Q ss_pred             eEEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccchhhh
Q 026342           70 DIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENF  149 (240)
Q Consensus        70 ~v~~~~~~~~~v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~~~~  149 (240)
                      .|.+++  +++|++|+||||+ .|+||.+|+.+|.++++.++  +++|+||++|.| ++||+|+|++++... ......+
T Consensus         4 ~i~~~~--~~~v~~itln~~~-~Nal~~~~~~~l~~~l~~~~--~~~~vvvl~g~g-~~F~~G~Dl~~~~~~-~~~~~~~   76 (229)
T PRK06213          4 LVSYTL--EDGVATITLDDGK-VNALSPAMIDALNAALDQAE--DDRAVVVITGQP-GIFSGGFDLKVMTSG-AQAAIAL   76 (229)
T ss_pred             eEEEEe--cCCEEEEEeCCCC-CCCCCHHHHHHHHHHHHHhh--ccCcEEEEeCCC-CceEcCcCHHHHhcc-hHhHHHH
Confidence            477777  7899999999984 79999999999999999988  457999999999 899999999876432 1111111


Q ss_pred             hhhhHHHHHHHHHcCCCcEEEEECchhchhhHHHhhhcCEEEEeCC-cEEecccccccccCCCchHHHHHhhcCHHHHHH
Q 026342          150 GRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADN-AIFGQTGPKVGSFDAGYGSSIMSRLVSTVQQCL  228 (240)
Q Consensus       150 ~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~-a~f~~pe~~~Gl~p~~g~~~~l~rlvG~~~a~e  228 (240)
                      .. ...+++.++.++|||+||+|||+|+|||++|+++||||||+++ ++|++||+++|++|++++..++++++|..++++
T Consensus        77 ~~-~~~~l~~~l~~~~kPvIAav~G~a~GgG~~lal~~D~rva~~~~a~f~~pe~~~Gl~~~~~~~~~l~~~~g~~~a~~  155 (229)
T PRK06213         77 LT-AGSTLARRLLSHPKPVIVACTGHAIAKGAFLLLSADYRIGVHGPFKIGLNEVAIGMTMPHAAIELARDRLTPSAFQR  155 (229)
T ss_pred             HH-HHHHHHHHHHcCCCCEEEEEcCeeeHHHHHHHHhCCeeeEecCCcEEECchhhhCCcCChHHHHHHHHHcCHHHHHH
Confidence            11 2456778899999999999999999999999999999999999 999999999999888878888999999999999


Q ss_pred             HHhcCCcccc
Q 026342          229 WWGLKKHVKC  238 (240)
Q Consensus       229 llltG~~i~A  238 (240)
                      |+++|++++|
T Consensus       156 lll~g~~~~a  165 (229)
T PRK06213        156 AVINAEMFDP  165 (229)
T ss_pred             HHHcCcccCH
Confidence            9999999986

>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=100.00  E-value=1.6e-37  Score=302.13  Aligned_cols=166  Identities=23%  Similarity=0.326  Sum_probs=145.9

Q ss_pred             eEEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccch---
Q 026342           70 DIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADY---  146 (240)
Q Consensus        70 ~v~~~~~~~~~v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~---  146 (240)
                      .+.++.. +++|++|+||||+++|+||.+|+.+|.++++.++.|+++|+|||+|.| ++||+|+|++++........   
T Consensus         7 ~i~~~~~-~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g-~~FcaG~Dl~~~~~~~~~~~~~~   84 (715)
T PRK11730          7 TLQVDWL-EDGIAELVFDAPGSVNKLDRATLASLGEALDALEAQSDLKGLLLTSAK-DAFIVGADITEFLSLFAAPEEEL   84 (715)
T ss_pred             eEEEEEc-CCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCcEEEEEECCC-CccccCcCHHHHhhhccCCHHHH
Confidence            4666632 689999999999999999999999999999999999999999999999 79999999987643111111   


Q ss_pred             hhhhhhhHHHHHHHHHcCCCcEEEEECchhchhhHHHhhhcCEEEEeCCcEEecccccccccCCCchHHHHHhhcCHHHH
Q 026342          147 ENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVSTVQQ  226 (240)
Q Consensus       147 ~~~~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~a~f~~pe~~~Gl~p~~g~~~~l~rlvG~~~a  226 (240)
                      ..+.. ...+++.++.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|..+|
T Consensus        85 ~~~~~-~~~~~~~~i~~~~kPvIAav~G~a~GgG~~LAlacD~ria~~~a~f~~pe~~lGl~p~~g~~~~L~rlvG~~~A  163 (715)
T PRK11730         85 SQWLH-FANSIFNRLEDLPVPTVAAINGYALGGGCECVLATDYRVASPDARIGLPETKLGIMPGFGGTVRLPRLIGADNA  163 (715)
T ss_pred             HHHHH-HHHHHHHHHHcCCCCEEEEECCEeehHHHHHHHhCCEEEEcCCCEEeCchhhcCCCCCchHHHHHHHhcCHHHH
Confidence            11111 24567788999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCcccc
Q 026342          227 CLWWGLKKHVKC  238 (240)
Q Consensus       227 ~ellltG~~i~A  238 (240)
                      ++|+++|+.++|
T Consensus       164 ~~llltG~~~~A  175 (715)
T PRK11730        164 LEWIAAGKDVRA  175 (715)
T ss_pred             HHHHHcCCcCCH
Confidence            999999999986

>KOG1679 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]

Probab=100.00  E-value=4.6e-38  Score=257.78  Aligned_cols=169  Identities=27%  Similarity=0.445  Sum_probs=153.0

Q ss_pred             eeEEEEEE--eCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccch
Q 026342           69 TDIIYEKA--VGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADY  146 (240)
Q Consensus        69 ~~v~~~~~--~~~~v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~  146 (240)
                      ..|.+++-  .+.||..|-||||.++|+|+.-|+++|.++++++..|+.+|+|+|++.-+..||+|+||++....+....
T Consensus        27 ~Ev~v~~L~g~~~GItvl~mNRpa~kNsl~r~~~~~l~~~l~~lk~D~~~RvvilrS~vpgvFCaGADLKER~~Ms~~Ev  106 (291)
T KOG1679|consen   27 NEVFVRRLTGKDEGITILNMNRPAKKNSLGRVFVKQLREVLDELKYDNKVRVVILRSLVPGVFCAGADLKERKTMSPSEV  106 (291)
T ss_pred             ceeeeeeccCCCCCeEEEecCChhhhccHHHHHHHHHHHHHHHHhhCCceeEEEEecCCCceeecCcchHhhhcCCHHHH
Confidence            34555431  2689999999999999999999999999999999999999999999988889999999999877665554


Q ss_pred             hhhhhhhHHHHHHHHHcCCCcEEEEECchhchhhHHHhhhcCEEEEeCCcEEecccccccccCCCchHHHHHhhcCHHHH
Q 026342          147 ENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVSTVQQ  226 (240)
Q Consensus       147 ~~~~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~a~f~~pe~~~Gl~p~~g~~~~l~rlvG~~~a  226 (240)
                      ..|.. .+..++..|.++|.|+||+|+|.|+|||++|+++||+|+|+++++++++|.+++++|++||+++|+|.+|...|
T Consensus       107 ~~fV~-~lR~~~~dIe~Lp~P~IAAidG~ALGGGLElALACDiRva~s~akmGLvET~laiiPGaGGtQRLpR~vg~ala  185 (291)
T KOG1679|consen  107 TRFVN-GLRGLFNDIERLPQPVIAAIDGAALGGGLELALACDIRVAASSAKMGLVETKLAIIPGAGGTQRLPRIVGVALA  185 (291)
T ss_pred             HHHHH-HHHHHHHHHHhCCccceehhcchhcccchhhhhhccceehhhhccccccccceeeecCCCccchhHHHHhHHHH
Confidence            44444 46788999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCcccc
Q 026342          227 CLWWGLKKHVKC  238 (240)
Q Consensus       227 ~ellltG~~i~A  238 (240)
                      +|+++|++.+++
T Consensus       186 KELIftarvl~g  197 (291)
T KOG1679|consen  186 KELIFTARVLNG  197 (291)
T ss_pred             HhHhhhheeccc
Confidence            999999999875

>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB

Probab=100.00  E-value=6.2e-37  Score=297.63  Aligned_cols=166  Identities=24%  Similarity=0.309  Sum_probs=146.4

Q ss_pred             eEEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccch---
Q 026342           70 DIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADY---  146 (240)
Q Consensus        70 ~v~~~~~~~~~v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~---  146 (240)
                      .+.++.. +++|++|+||||++.|+||.+|+.+|.+++++++.|+++|+|||+|.| ++||+|+|++++........   
T Consensus         7 ~i~~~~~-~~gva~Itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~~~~~~~   84 (714)
T TIGR02437         7 TIQVTAL-EDGIAELKFDAPGSVNKFDRATLASLDQALDAIKAQSSLKGVILTSGK-DAFIVGADITEFLGLFALPDAEL   84 (714)
T ss_pred             eEEEEEc-cCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCC-CccccCcCHHHHhhcccCCHHHH
Confidence            5677643 689999999999999999999999999999999999999999999999 79999999998643211111   


Q ss_pred             hhhhhhhHHHHHHHHHcCCCcEEEEECchhchhhHHHhhhcCEEEEeCCcEEecccccccccCCCchHHHHHhhcCHHHH
Q 026342          147 ENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVSTVQQ  226 (240)
Q Consensus       147 ~~~~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~a~f~~pe~~~Gl~p~~g~~~~l~rlvG~~~a  226 (240)
                      ..+.+ ...+++.+|.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|..+|
T Consensus        85 ~~~~~-~~~~~~~~i~~~pkPvIAai~G~alGGGleLalacD~ria~~~a~fglPEv~lGl~Pg~Ggt~rL~rliG~~~A  163 (714)
T TIGR02437        85 IQWLL-FANSIFNKLEDLPVPTVAAINGIALGGGCECVLATDFRIADDTAKIGLPETKLGIMPGFGGTVRLPRVIGADNA  163 (714)
T ss_pred             HHHHH-HHHHHHHHHHhCCCCEEEEECCeeecHHHHHHHhCCEEEEeCCCEEecchhhcCCCCCccHHHHHHHHhCHHHH
Confidence            11111 24567889999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCcccc
Q 026342          227 CLWWGLKKHVKC  238 (240)
Q Consensus       227 ~ellltG~~i~A  238 (240)
                      ++|+++|+.++|
T Consensus       164 ~~llltG~~~~A  175 (714)
T TIGR02437       164 LEWIASGKENRA  175 (714)
T ss_pred             HHHHHcCCcCCH
Confidence            999999999986

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.

>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=100.00  E-value=1.8e-36  Score=294.60  Aligned_cols=167  Identities=20%  Similarity=0.367  Sum_probs=144.4

Q ss_pred             eEEEEEEeCCCEEEEEEcCC-CCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccc-hh
Q 026342           70 DIIYEKAVGEGIAKITINRP-DRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYAD-YE  147 (240)
Q Consensus        70 ~v~~~~~~~~~v~~Itlnrp-~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~-~~  147 (240)
                      .+.+++. +++|++|+|||| ++.|+||.+|+.+|.+++++++.|+++|+|||+|.++++||+|+|++++....... ..
T Consensus         6 ~~~~~~~-~~~va~itlnrp~~~~Nal~~~~~~~L~~~l~~~~~d~~vr~vVl~~~~~~~F~aG~Dl~~~~~~~~~~~~~   84 (708)
T PRK11154          6 AFTLNVR-EDNIAVITIDVPGEKMNTLKAEFAEQVRAILKQLREDKELKGVVFISGKPDNFIAGADINMLAACKTAQEAE   84 (708)
T ss_pred             eEEEEEc-CCCEEEEEECCCCCCCcCCCHHHHHHHHHHHHHHHhCCCceEEEEecCCCCCcccCcChHHhhccCCHHHHH
Confidence            3556653 689999999999 68999999999999999999999999999999997657999999998764321111 11


Q ss_pred             hhhhhhHHHHHHHHHcCCCcEEEEECchhchhhHHHhhhcCEEEEeCC--cEEecccccccccCCCchHHHHHhhcCHHH
Q 026342          148 NFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADN--AIFGQTGPKVGSFDAGYGSSIMSRLVSTVQ  225 (240)
Q Consensus       148 ~~~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~--a~f~~pe~~~Gl~p~~g~~~~l~rlvG~~~  225 (240)
                      .+ .....+++.+|.++||||||+|||+|+|||++|+++||+|||+++  ++|++||+++|++|++|++++|++++|..+
T Consensus        85 ~~-~~~~~~~~~~i~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~a~fg~pe~~lGl~p~~gg~~~L~r~vG~~~  163 (708)
T PRK11154         85 AL-ARQGQQLFAEIEALPIPVVAAIHGACLGGGLELALACHYRVCTDDPKTVLGLPEVQLGLLPGSGGTQRLPRLIGVST  163 (708)
T ss_pred             HH-HHHHHHHHHHHHhCCCCEEEEECCeeechHHHHHHhCCEEEEeCCCCceEeCccccCCCCCCccHHhHHHhhcCHHH
Confidence            11 112456778999999999999999999999999999999999987  489999999999999999999999999999


Q ss_pred             HHHHHhcCCcccc
Q 026342          226 QCLWWGLKKHVKC  238 (240)
Q Consensus       226 a~ellltG~~i~A  238 (240)
                      |++|+++|+.|+|
T Consensus       164 A~~llltG~~i~a  176 (708)
T PRK11154        164 ALDMILTGKQLRA  176 (708)
T ss_pred             HHHHHHhCCcCCH
Confidence            9999999999986

>cd06558 crotonase-like Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily

Probab=100.00  E-value=3.1e-36  Score=249.79  Aligned_cols=163  Identities=37%  Similarity=0.599  Sum_probs=146.0

Q ss_pred             EEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccc--hhhh
Q 026342           72 IYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYAD--YENF  149 (240)
Q Consensus        72 ~~~~~~~~~v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~--~~~~  149 (240)
                      .+++  +++|++|+||+|++.|++|.+|+++|.++++.++.|+++++|||+|.| +.||+|+|++++.......  ...+
T Consensus         2 ~~~~--~~~i~~i~l~~~~~~N~~~~~~~~~l~~~l~~~~~d~~~~~vvl~~~~-~~Fs~G~dl~~~~~~~~~~~~~~~~   78 (195)
T cd06558           2 LVER--DGGVATITLNRPEKRNALSLEMLDELAAALDEAEADPDVRVVVLTGAG-KAFCAGADLKELAALSDAGEEARAF   78 (195)
T ss_pred             EEEE--ECCEEEEEECCccccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCC-CceEeCcCHHHHhcccccchhHHHH
Confidence            4555  689999999999999999999999999999999999999999999997 8999999999875543222  1122


Q ss_pred             hhhhHHHHHHHHHcCCCcEEEEECchhchhhHHHhhhcCEEEEeCCcEEecccccccccCCCchHHHHHhhcCHHHHHHH
Q 026342          150 GRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVSTVQQCLW  229 (240)
Q Consensus       150 ~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~a~f~~pe~~~Gl~p~~g~~~~l~rlvG~~~a~el  229 (240)
                      .+ .+.+++.++..++||+||+|||+|+|+|++++++||+||++++++|++||+++|++|+.+++++|++++|.++++++
T Consensus        79 ~~-~~~~~~~~i~~~~~p~Ia~v~G~a~g~G~~la~~~D~~i~~~~~~~~~pe~~~G~~p~~g~~~~l~~~~g~~~a~~~  157 (195)
T cd06558          79 IR-ELQELLRALLRLPKPVIAAVNGAALGGGLELALACDIRIAAEDAKFGLPEVKLGLVPGGGGTQRLPRLVGPARAREL  157 (195)
T ss_pred             HH-HHHHHHHHHHcCCCCEEEEECCeeecHHHHHHHhCCEEEecCCCEEechhhhcCCCCCCcHHHHHHHHhCHHHHHHH
Confidence            22 45678889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhcCCcccc
Q 026342          230 WGLKKHVKC  238 (240)
Q Consensus       230 lltG~~i~A  238 (240)
                      +++|+.++|
T Consensus       158 ~l~g~~~~a  166 (195)
T cd06558         158 LLTGRRISA  166 (195)
T ss_pred             HHcCCccCH
Confidence            999999985

This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase. Many of these play important roles in fatty acid metabolism. In addition to a conserved structural core and the formation of trimers (or dimers of trimers), a common feature in this superfamily is the stabilization of an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two conserved backbone NH groups in active sites that form an oxyanion hole.

>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial

Probab=100.00  E-value=1.6e-36  Score=295.43  Aligned_cols=168  Identities=19%  Similarity=0.344  Sum_probs=145.4

Q ss_pred             cceeEEEEEEeCCCEEEEEEcCCC-CCCCCCHHHHHHHHHHHHHhhhCCCeeEE-EEeeCCCCCcccCCCccccccCCcc
Q 026342           67 EFTDIIYEKAVGEGIAKITINRPD-RRNAFRPHTVKELIRAFNDARDDSSVGVI-ILTGKGTEAFCSGGDQALRTRDGYA  144 (240)
Q Consensus        67 ~~~~v~~~~~~~~~v~~Itlnrp~-~~Nal~~~~~~~L~~~l~~~~~d~~v~vv-Vltg~g~~~FcaG~Dl~~~~~~~~~  144 (240)
                      .++.+.++.  +++|++|+||||+ +.|+||.+++.+|.+++++++.|+++|++ |++|.| ++||+|+|++++......
T Consensus        11 ~~~~~~~~~--~~gVa~itlnrP~~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVvltg~g-~~F~aG~Dl~~~~~~~~~   87 (737)
T TIGR02441        11 ARTHRHYEV--KGDVAVVKIDSPNSKVNTLSKELFAEFKEVMNELWTNEAIKSAVLISGKP-GSFVAGADIQMIAACKTA   87 (737)
T ss_pred             CCCeEEEEE--ECCEEEEEEcCCCCCCCCCCHHHHHHHHHHHHHHhhCCCCEEEEEEECCC-CcceeCcCHHHHhccCCh
Confidence            345577877  7999999999998 58999999999999999999999999965 679998 899999999987532111


Q ss_pred             c-hhhhhhhhHHHHHHHHHcCCCcEEEEECchhchhhHHHhhhcCEEEEeCC--cEEecccccccccCCCchHHHHHhhc
Q 026342          145 D-YENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADN--AIFGQTGPKVGSFDAGYGSSIMSRLV  221 (240)
Q Consensus       145 ~-~~~~~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~--a~f~~pe~~~Gl~p~~g~~~~l~rlv  221 (240)
                      . ...+. ....+++.+|.++||||||+|||+|+|||++|+++||||||+++  ++|++||+++|++|++|++++|+|++
T Consensus        88 ~~~~~~~-~~~~~l~~~i~~~~kPvIAav~G~a~GgG~eLALacD~ria~~~a~a~fglpEv~lGl~Pg~Ggt~rLprli  166 (737)
T TIGR02441        88 QEVTQLS-QEGQEMFERIEKSQKPIVAAISGSCLGGGLELALACHYRIATKDRKTLLGLPEVMLGLLPGAGGTQRLPKLT  166 (737)
T ss_pred             HHHHHHH-HHHHHHHHHHHhCCCCEEEEECCEeecHHHHHHHhCCEEEEcCCCCCeEecchhhhCCCCCccHhhhHHHhh
Confidence            1 11111 13456788999999999999999999999999999999999987  58999999999999999999999999


Q ss_pred             CHHHHHHHHhcCCcccc
Q 026342          222 STVQQCLWWGLKKHVKC  238 (240)
Q Consensus       222 G~~~a~ellltG~~i~A  238 (240)
                      |..+|++|+++|++++|
T Consensus       167 G~~~A~~l~ltG~~i~a  183 (737)
T TIGR02441       167 GVPAALDMMLTGKKIRA  183 (737)
T ss_pred             CHHHHHHHHHcCCcCCH
Confidence            99999999999999986

Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).

>TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase

Probab=100.00  E-value=5.1e-36  Score=281.84  Aligned_cols=174  Identities=14%  Similarity=0.178  Sum_probs=145.4

Q ss_pred             CCCCcceeEEEEEEeCCCEEEEEEcCCCCC-------------CCCCHHHHHHHHHHHHHhh-hCCCeeEEEEeeCCCCC
Q 026342           63 ESGTEFTDIIYEKAVGEGIAKITINRPDRR-------------NAFRPHTVKELIRAFNDAR-DDSSVGVIILTGKGTEA  128 (240)
Q Consensus        63 ~~~~~~~~v~~~~~~~~~v~~Itlnrp~~~-------------Nal~~~~~~~L~~~l~~~~-~d~~v~vvVltg~g~~~  128 (240)
                      +.+..|.+|.+..+++++|++||||||+++             |+|+.+|+.+|.+++++++ +|++||+|||||.| +.
T Consensus       250 ~~~~~~~~~~v~~~~~~~va~itlnrP~~~~~~~~~~~~~~~~Nal~~~~~~~L~~a~~~~~~~d~~vr~vVl~g~G-~~  328 (546)
T TIGR03222       250 EDGVRYPTVDVAIDRAARTATITLKGPKAAQPADIAAIVAQGANWWPLKLARELDDAILHLRTNELDIGLWVFRTQG-DA  328 (546)
T ss_pred             cCCcceeeEEEEEeccCCEEEEEecChhhcCccccccccccccCcCCHHHHHHHHHHHHHHhhCCCCeEEEEEEcCC-CC
Confidence            334556666665544799999999999999             9999999999999999998 45999999999998 66


Q ss_pred             -cccCCCccccccCCccchhhhhhhhHHHHHHHHHcCCCcEEEEE-Cchhchhh-HHHhhhcCEEEE-------eCCcEE
Q 026342          129 -FCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMV-AGYAVGGG-HVLHMVCDLTIA-------ADNAIF  198 (240)
Q Consensus       129 -FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~IAav-~G~a~GgG-~~lal~~D~ria-------s~~a~f  198 (240)
                       ||+|+|++............... ....++.+|.++|||+||+| ||+|+||| ++|+++||+|||       +++++|
T Consensus       329 ~F~aG~Dl~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~kpviAav~~G~a~GgG~~eLalacD~~ia~~~~~~~~~~a~f  407 (546)
T TIGR03222       329 ELVLAADALLEAHKDHWFVRETIG-YLRRTLARLDVSSRSLFALIEPGSCFAGTLAELAFAADRSYMLAFPDNNDPEPAI  407 (546)
T ss_pred             ceecCcCccccccccchhHHHHHH-HHHHHHHHHHcCCCCEEEEECCCeEeHHHHHHHHHhCceeeecCCCCCCCCCCEE
Confidence             99999997422111101111111 23456788999999999999 89999999 999999999999       899999


Q ss_pred             ecccccccccCCCchHHHHHhhc-CHHHH--HHHHhcCCcccc
Q 026342          199 GQTGPKVGSFDAGYGSSIMSRLV-STVQQ--CLWWGLKKHVKC  238 (240)
Q Consensus       199 ~~pe~~~Gl~p~~g~~~~l~rlv-G~~~a--~ellltG~~i~A  238 (240)
                      ++||+++|++|+++++++|++++ |..++  ++|+++|+.|+|
T Consensus       408 ~~~e~~lGl~p~~gg~~~L~~~v~G~~~a~~~~~~ltg~~i~A  450 (546)
T TIGR03222       408 TLSELNFGLYPMVNGLSRLATRFYAEPAPVAAVRDKIGQALDA  450 (546)
T ss_pred             eCCccccccCCCcCcHHHHHHHhcCchhHHHHHHHHhCCCCCH
Confidence            99999999999999999999998 99999  569999999987

In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH.

>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ

Probab=100.00  E-value=6.6e-36  Score=290.19  Aligned_cols=159  Identities=22%  Similarity=0.423  Sum_probs=139.4

Q ss_pred             CCCEEEEEEcCC-CCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEE-eeCCCCCcccCCCccccccCCcc-chhhhhhhhH
Q 026342           78 GEGIAKITINRP-DRRNAFRPHTVKELIRAFNDARDDSSVGVIIL-TGKGTEAFCSGGDQALRTRDGYA-DYENFGRLNV  154 (240)
Q Consensus        78 ~~~v~~Itlnrp-~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVl-tg~g~~~FcaG~Dl~~~~~~~~~-~~~~~~~~~~  154 (240)
                      +++|++|+|||| ++.|+||.+|+.+|.++|++++.|+++|+||| +|.| ++||+|+|++++...... ....... ..
T Consensus         8 ~~~Va~itlnrp~~~~Nal~~~~~~eL~~~l~~~~~d~~vr~VVl~~g~g-~~FcaG~Dl~~~~~~~~~~~~~~~~~-~~   85 (699)
T TIGR02440         8 EDGIAILTIDVPGEKMNTLKAEFADQVSEILSQLKRDKSIRGLVLVSGKP-DNFIAGADISMLAACQTAGEAKALAQ-QG   85 (699)
T ss_pred             CCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCC-CceeeccCchhhhccCChhHHHHHHH-HH
Confidence            689999999999 68999999999999999999999999999986 5677 799999999986432111 1111111 24


Q ss_pred             HHHHHHHHcCCCcEEEEECchhchhhHHHhhhcCEEEEeCC--cEEecccccccccCCCchHHHHHhhcCHHHHHHHHhc
Q 026342          155 LDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADN--AIFGQTGPKVGSFDAGYGSSIMSRLVSTVQQCLWWGL  232 (240)
Q Consensus       155 ~~l~~~i~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~--a~f~~pe~~~Gl~p~~g~~~~l~rlvG~~~a~elllt  232 (240)
                      .+++.++.++||||||+|||+|+|||++|+++||+|||+++  ++|++||+++|++|++|++++|+|++|..+|++|+++
T Consensus        86 ~~~~~~l~~~~kPvIAaVnG~a~GgG~~LaLacD~ria~~~~~a~fg~pev~lGl~p~~g~~~~L~r~vG~~~A~~lllt  165 (699)
T TIGR02440        86 QVLFAELEALPIPVVAAIHGACLGGGLELALACHSRVCSDDDKTVLGLPEVQLGLLPGSGGTQRLPRLIGVSTALDMILT  165 (699)
T ss_pred             HHHHHHHHhCCCCEEEEECCEeecHHHHHHHhCCEEEEcCCCCcEEechhhcccCCCCccHHHHHHHhcCHHHHHHHHHc
Confidence            56778899999999999999999999999999999999986  7999999999999999999999999999999999999


Q ss_pred             CCcccc
Q 026342          233 KKHVKC  238 (240)
Q Consensus       233 G~~i~A  238 (240)
                      |+.|+|
T Consensus       166 G~~~~a  171 (699)
T TIGR02440       166 GKQLRA  171 (699)
T ss_pred             CCcCCH
Confidence            999986

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.

>PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional

Probab=100.00  E-value=6.4e-36  Score=281.85  Aligned_cols=173  Identities=14%  Similarity=0.148  Sum_probs=145.1

Q ss_pred             CCcceeEEEEEEeCCCEEEEEEcCCCCC-------------CCCCHHHHHHHHHHHHHhhh-CCCeeEEEEeeCCCCCcc
Q 026342           65 GTEFTDIIYEKAVGEGIAKITINRPDRR-------------NAFRPHTVKELIRAFNDARD-DSSVGVIILTGKGTEAFC  130 (240)
Q Consensus        65 ~~~~~~v~~~~~~~~~v~~Itlnrp~~~-------------Nal~~~~~~~L~~~l~~~~~-d~~v~vvVltg~g~~~Fc  130 (240)
                      +-.|.++.++.+.+++|++||||||+++             |+|+.+|+.+|.+++++++. |+++|+|||||.|+++||
T Consensus       256 ~~~~~~~~v~~~~~~~va~itlnrP~~~Na~~~~~~~~~~~Nal~~~~~~eL~~al~~~~~~d~~vr~vVltg~G~~~F~  335 (550)
T PRK08184        256 GLRYRHVDVEIDRAARTATITVKAPTAAQPADIAGIVAAGAAWWPLQMARELDDAILHLRTNELDIGTWVLKTEGDAAAV  335 (550)
T ss_pred             ceeeEEEEEEEEccCCEEEEEEeCcccccccccccccccccccCCHHHHHHHHHHHHHHHhcCCCeEEEEEEcCCCCcEE
Confidence            4467777776655789999999999988             68999999999999999986 799999999999834899


Q ss_pred             cCCCccccccCCccchhhhhhhhHHHHHHHHHcCCCcEEEEEC-chhchhh-HHHhhhcCEEEEe-------CCcEEecc
Q 026342          131 SGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVA-GYAVGGG-HVLHMVCDLTIAA-------DNAIFGQT  201 (240)
Q Consensus       131 aG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~IAav~-G~a~GgG-~~lal~~D~rias-------~~a~f~~p  201 (240)
                      +|+|++.............. .....++.+|.++||||||+|| |+|+||| ++|+++||+|||+       ++++|++|
T Consensus       336 aG~Dl~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~kPvIAaV~~G~a~GgG~~eLalacD~~ia~~~~~~~~~~a~f~~p  414 (550)
T PRK08184        336 LAADATLLAHKDHWLVRETR-GYLRRTLKRLDVTSRSLFALIEPGSCFAGTLAELALAADRSYMLALPDDNDPAPAITLS  414 (550)
T ss_pred             eCCChhhhcccchHHHHHHH-HHHHHHHHHHHhCCCCEEEEECCCceehhHHHHHHHHCChhhhcCCCCCCCCCCEEECc
Confidence            99998733211110011111 1234567889999999999997 9999999 9999999999999       99999999


Q ss_pred             cccccccCCCchHHHHHhh-cCHHHHHHH--HhcCCcccc
Q 026342          202 GPKVGSFDAGYGSSIMSRL-VSTVQQCLW--WGLKKHVKC  238 (240)
Q Consensus       202 e~~~Gl~p~~g~~~~l~rl-vG~~~a~el--lltG~~i~A  238 (240)
                      |+++|++|++|++++|+|+ +|..+|++|  +++|+.|+|
T Consensus       415 e~~~Gl~p~~gg~~~L~r~~vG~~~A~~~~l~~tg~~i~A  454 (550)
T PRK08184        415 ALNFGLYPMVNGLSRLARRFYGEPDPLAAVRAKIGQPLDA  454 (550)
T ss_pred             cccccCCCCCCcHHHhHHHhcChHHHHHHHHHHhCCcCCH
Confidence            9999999999999999988 699999997  599999986

>TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase

Probab=100.00  E-value=1.7e-35  Score=278.28  Aligned_cols=173  Identities=18%  Similarity=0.257  Sum_probs=144.9

Q ss_pred             CCCcceeEEEEEEeCCCEEEEEEcCCC----------CCCCCCHHHHHHHHHHHHHhh-hCCCeeEEEEeeCCCCCcccC
Q 026342           64 SGTEFTDIIYEKAVGEGIAKITINRPD----------RRNAFRPHTVKELIRAFNDAR-DDSSVGVIILTGKGTEAFCSG  132 (240)
Q Consensus        64 ~~~~~~~v~~~~~~~~~v~~Itlnrp~----------~~Nal~~~~~~~L~~~l~~~~-~d~~v~vvVltg~g~~~FcaG  132 (240)
                      ++++|++|.+++  +++|++|+||||+          |+|+||.+|+.+|.++|+.++ .|+++|+|||||.++++||+|
T Consensus         6 ~~~~~~~v~~~~--~g~Va~ItLnrpe~~~~~p~~~~k~Nal~~~~l~eL~~al~~~~~~d~~vRvVVLtg~~Gk~FcaG   83 (546)
T TIGR03222         6 EPSQYRHWKLTF--DGPVATLTMDVDEDGGLRPGYKLKLNSYDLGVDIELHDAVQRIRFEHPEVRTVVMTSGKDRVFCSG   83 (546)
T ss_pred             CCCCCceEEEEe--eCCEEEEEEecccccccCccccccCCCCCHHHHHHHHHHHHHHHhcCCCeeEEEEecCCCCCCcCC
Confidence            355678899988  6899999999976          899999999999999999999 789999999999754899999


Q ss_pred             CCccccccCCccchhhh---hhhhHHHHHHHHHcCCCcEEEEECchhchhhHHHhhhcCEEEEeCC--cEEeccccc-cc
Q 026342          133 GDQALRTRDGYADYENF---GRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADN--AIFGQTGPK-VG  206 (240)
Q Consensus       133 ~Dl~~~~~~~~~~~~~~---~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~--a~f~~pe~~-~G  206 (240)
                      +|++++...........   .......+...+.++|||+||+|||+|+|||++|+++||+||++++  ++|++||++ +|
T Consensus        84 ~DL~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~pkPvIAAVnG~a~GGG~~LALacD~rvAs~~a~a~f~~pEv~~lG  163 (546)
T TIGR03222        84 ANIFMLGLSTHAWKVNFCKFTNETRNGIEDSSRHSGLKFLAAVNGTCAGGGYELALACDEIMLVDDRSSSVSLPEVPLLG  163 (546)
T ss_pred             cCHHHHhccccchhhhHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeehHHHHHHHhCCEEEEecCCCcEEEccchhccC
Confidence            99987643211111111   1101123455678999999999999999999999999999999986  799999997 99


Q ss_pred             ccCCCchHHHHH--hhcCHHHHHHHHhcCCcccc
Q 026342          207 SFDAGYGSSIMS--RLVSTVQQCLWWGLKKHVKC  238 (240)
Q Consensus       207 l~p~~g~~~~l~--rlvG~~~a~ellltG~~i~A  238 (240)
                      ++|++++..+++  +++|..+|++|+++|+.|+|
T Consensus       164 l~P~~gg~~~l~~~~~vg~~~A~~llltG~~i~A  197 (546)
T TIGR03222       164 VLPGTGGLTRVTDKRRVRRDHADIFCTIEEGVRG  197 (546)
T ss_pred             cCCccchhhhccccchhCHHHHHHHHHcCCCccH
Confidence            999998888887  79999999999999999986

In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH.

>KOG1681 consensus Enoyl-CoA isomerase [Lipid transport and metabolism]

Probab=100.00  E-value=3e-36  Score=249.03  Aligned_cols=173  Identities=25%  Similarity=0.342  Sum_probs=145.3

Q ss_pred             CcceeEEEE-EEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccC---
Q 026342           66 TEFTDIIYE-KAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRD---  141 (240)
Q Consensus        66 ~~~~~v~~~-~~~~~~v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~---  141 (240)
                      ..|+.+.+. +..+.-|..+.||||.|+|+|+..|+.|+.++|+.+..||++|+|||+|+| |+||+|+|+..+...   
T Consensus        16 ~s~ksl~v~vk~~~~~V~hv~lnRPsk~Nal~~~~w~E~~~cf~~l~~dpdcr~iilsg~G-KhFcaGIDl~~~~~~~~~   94 (292)
T KOG1681|consen   16 HSYKSLEVSVKSAQPFVYHVQLNRPSKLNALNKVFWREFKECFDSLDRDPDCRAIILSGAG-KHFCAGIDLNDMASDRIL   94 (292)
T ss_pred             cccceeeeeecCCCCeEEEEEecCcchhhhhhHHHHHHHHHHHHhhccCCCceEEEEecCC-cceecccCcchhhhhhcc
Confidence            345544433 223678999999999999999999999999999999999999999999999 999999997643221   


Q ss_pred             --Cccchhhhh---h---hhHHHHHHHHHcCCCcEEEEECchhchhhHHHhhhcCEEEEeCCcEEecccccccccCCCch
Q 026342          142 --GYADYENFG---R---LNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYG  213 (240)
Q Consensus       142 --~~~~~~~~~---~---~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~a~f~~pe~~~Gl~p~~g~  213 (240)
                        ...+.....   +   ..+++-+..|.+||||+|++|+|+|+|+|+.|..+||+|+|+++|.|..-|+.+|+..+.|.
T Consensus        95 ~~~~dd~aR~g~~lrr~Ik~~Q~~~t~ie~CpKPVIaavHg~CiGagvDLiTAcDIRycsqDAffsvkEVDvglaADvGT  174 (292)
T KOG1681|consen   95 QPEGDDVARKGRSLRRIIKRYQDTFTAIERCPKPVIAAVHGACIGAGVDLITACDIRYCSQDAFFSVKEVDVGLAADVGT  174 (292)
T ss_pred             ccccchHhhhhHHHHHHHHHHHHHHHHHHhCChhHHHHHHhhhccccccceeecceeeecccceeeeeeeeeehhhchhh
Confidence              111111111   1   12456677899999999999999999999999999999999999999999999999988888


Q ss_pred             HHHHHhhcC-HHHHHHHHhcCCccccC
Q 026342          214 SSIMSRLVS-TVQQCLWWGLKKHVKCG  239 (240)
Q Consensus       214 ~~~l~rlvG-~~~a~ellltG~~i~A~  239 (240)
                      ..+||..+| ...++|+.||++.|.|+
T Consensus       175 L~RlpkvVGn~s~~~elafTar~f~a~  201 (292)
T KOG1681|consen  175 LNRLPKVVGNQSLARELAFTARKFSAD  201 (292)
T ss_pred             HhhhhHHhcchHHHHHHHhhhhhcchh
Confidence            899999999 89999999999999885

>PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional

Probab=100.00  E-value=1.6e-34  Score=272.42  Aligned_cols=171  Identities=19%  Similarity=0.265  Sum_probs=143.1

Q ss_pred             CcceeEEEEEEeCCCEEEEEEcCC-------C---CCCCCCHHHHHHHHHHHHHhh-hCCCeeEEEEeeCCCCCcccCCC
Q 026342           66 TEFTDIIYEKAVGEGIAKITINRP-------D---RRNAFRPHTVKELIRAFNDAR-DDSSVGVIILTGKGTEAFCSGGD  134 (240)
Q Consensus        66 ~~~~~v~~~~~~~~~v~~Itlnrp-------~---~~Nal~~~~~~~L~~~l~~~~-~d~~v~vvVltg~g~~~FcaG~D  134 (240)
                      ..++.+.++.  +++|++|+||||       +   +.|+|+.+|+.+|.+++++++ +|+++|+|||+|.++++||+|+|
T Consensus        12 ~~~~~~~~e~--~~~Va~ItLnrpe~~~~rP~~~~~~Nal~~~m~~eL~~al~~~~~~d~~vrvVVLtg~ggk~FcaG~D   89 (550)
T PRK08184         12 SQYRHWKLSF--DGPVATLTMDVDEDGGLRPGYKLKLNSYDLGVDIELHDALQRIRFEHPEVRTVVVTSAKDRVFCSGAN   89 (550)
T ss_pred             CCCceEEEEe--eCCEEEEEEcCccccccCcccccCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEEecCCCCCCCCccC
Confidence            4577889987  699999999965       3   899999999999999999999 78999999999986589999999


Q ss_pred             ccccccCCccchhhhh---hhhHHHHHHHHHcCCCcEEEEECchhchhhHHHhhhcCEEEEeCC--cEEeccccc-cccc
Q 026342          135 QALRTRDGYADYENFG---RLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADN--AIFGQTGPK-VGSF  208 (240)
Q Consensus       135 l~~~~~~~~~~~~~~~---~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~--a~f~~pe~~-~Gl~  208 (240)
                      ++.+............   +.....+...+.++||||||+|||+|+|||++|+++|||||++++  ++|++||++ +|++
T Consensus        90 L~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~pkPvIAAVnG~a~GGG~~LALacD~rIas~~~~a~fg~pEv~~~Gl~  169 (550)
T PRK08184         90 IFMLGGSSHAWKVNFCKFTNETRNGIEDSSRHSGLKFIAAVNGTCAGGGYELALACDEIVLVDDRSSAVSLPEVPLLGVL  169 (550)
T ss_pred             HHhHhccccchhhhHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeehHHHHHHHhCCEEEEecCCCcEEEccchhccccC
Confidence            9876432111111111   101122445778999999999999999999999999999999987  899999997 9999


Q ss_pred             CCCchHHHHH--hhcCHHHHHHHHhcCCcccc
Q 026342          209 DAGYGSSIMS--RLVSTVQQCLWWGLKKHVKC  238 (240)
Q Consensus       209 p~~g~~~~l~--rlvG~~~a~ellltG~~i~A  238 (240)
                      |++++.++|+  +++|..+|++|+++|+.|+|
T Consensus       170 P~~gg~~rl~~~~~vg~~~A~~llltG~~i~A  201 (550)
T PRK08184        170 PGTGGLTRVTDKRKVRRDLADIFCTIEEGVRG  201 (550)
T ss_pred             CCcchHHHhhhhhhcCHHHHHHHHHhCCcccH
Confidence            9998888888  78999999999999999986

>KOG0016 consensus Enoyl-CoA hydratase/isomerase [Lipid transport and metabolism]

Probab=100.00  E-value=4.7e-33  Score=234.28  Aligned_cols=172  Identities=26%  Similarity=0.386  Sum_probs=150.5

Q ss_pred             CCcceeEEEEEEeCCCEEEEEEc-CCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCc
Q 026342           65 GTEFTDIIYEKAVGEGIAKITIN-RPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGY  143 (240)
Q Consensus        65 ~~~~~~v~~~~~~~~~v~~Itln-rp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~  143 (240)
                      ...+..+.+++  ++|+.+|.+| ||++.|+++.+++.++.++|+.+.+|+++..++++|.| ++||+|.|+..+.....
T Consensus         3 ~~~~~~~vv~~--~~g~~~I~~~~~Pkk~Nal~~e~y~~i~~al~~a~~dds~~~tv~s~~G-~~f~sG~Df~~~~~~~~   79 (266)
T KOG0016|consen    3 AMRYREIVVTR--ENGPFFIALNIRPKKKNALNREDYVYIQRALEEANDDDSVSITVLSSNG-SYFCSGLDFSPFAKALD   79 (266)
T ss_pred             cccccceEEEe--cCCcEEEEecCCCcccccccHHHHHHHHHHHHHhhcccceEEEEEecCc-cEEeeccccchhhhcCC
Confidence            34667788888  8999999999 99999999999999999999999999999999999999 89999999986543222


Q ss_pred             cchhhh------hhhhHHHHHHHHHcCCCcEEEEECchhchhhHHHhhhcCEEEEeCCcEEecccccccccCCCchHHHH
Q 026342          144 ADYENF------GRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIM  217 (240)
Q Consensus       144 ~~~~~~------~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~a~f~~pe~~~Gl~p~~g~~~~l  217 (240)
                      .+..+.      ....+..+.+.+..+|||+||.|||+|+|.|..+...||+++|+|+++|..|++++|+.|++|.++.+
T Consensus        80 ~d~~~~~~~~~~~v~~~~~~v~~fi~f~Kplia~vNGPAIGlgasil~lcD~V~A~Dka~F~TPfa~lGq~PEG~Ss~t~  159 (266)
T KOG0016|consen   80 DDANEESDKASKFVKNVSCFVNTFINFPKPLVALVNGPAIGLGASILPLCDYVWASDKAWFQTPFAKLGQSPEGCSSVTL  159 (266)
T ss_pred             CcccccchhhHHHHHHHHHHHHHHhcCCCCEEEEecCCccchhhHHhhhhheEEeccceEEeccchhcCCCCCcceeeee
Confidence            111111      01123346788999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhcCHHHHHHHHhcCCccccC
Q 026342          218 SRLVSTVQQCLWWGLKKHVKCG  239 (240)
Q Consensus       218 ~rlvG~~~a~ellltG~~i~A~  239 (240)
                      |+++|...|.||++.|++++|.
T Consensus       160 p~imG~~~A~E~ll~~~kltA~  181 (266)
T KOG0016|consen  160 PKIMGSASANEMLLFGEKLTAQ  181 (266)
T ss_pred             hHhhchhhHHHHHHhCCcccHH
Confidence            9999999999999999999874

>KOG1684 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]

Probab=99.97  E-value=4.5e-32  Score=237.13  Aligned_cols=166  Identities=24%  Similarity=0.344  Sum_probs=147.2

Q ss_pred             eeEEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCcccccc---CCcc-
Q 026342           69 TDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTR---DGYA-  144 (240)
Q Consensus        69 ~~v~~~~~~~~~v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~---~~~~-  144 (240)
                      .+|.++.  .+....||||||+.+||||.+|+..+.-.|..++.++.+++||+.|.|+++||+|+|+.....   +... 
T Consensus        38 ~~VL~e~--~~~~r~itLNRPKaLNAlnleMv~~~~~~L~~we~s~~~k~vIlkgs~~raFCAGgDI~~~ae~~~d~~~~  115 (401)
T KOG1684|consen   38 DQVLVEG--KGCARVITLNRPKALNALNLEMVLSIYPKLVEWEKSPLVKLVILKGSGGRAFCAGGDIKAVAESIKDKETP  115 (401)
T ss_pred             CceEEec--CCceeEEEecCchhhccccHHHHHHHHHHHHhhccCCCceEEEEecCCCceeecCccHHHHHHHhhcCCch
Confidence            4688887  789999999999999999999999999999999999999999999998899999999874332   1111 


Q ss_pred             chhhhhhhhHHHHHHHHHcCCCcEEEEECchhchhhHHHhhhcCEEEEeCCcEEecccccccccCCCchHHHHHhhcCHH
Q 026342          145 DYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVSTV  224 (240)
Q Consensus       145 ~~~~~~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~a~f~~pe~~~Gl~p~~g~~~~l~rlvG~~  224 (240)
                      ....+.+ ..+.+...|.++.||.||.+||..+|||++|++..-||||+|++.|++||..+|++|+.|++++|+|+.| .
T Consensus       116 ~~~~fF~-~eYsl~~~igtY~KP~ValmdGITMGgG~GLS~hg~fRVATerT~~AmPEt~IGlfPDVG~Sy~lsrlpg-~  193 (401)
T KOG1684|consen  116 EVKKFFT-EEYSLNHLIGTYLKPYVALMDGITMGGGVGLSVHGRFRVATERTVFAMPETGIGLFPDVGASYFLSRLPG-Y  193 (401)
T ss_pred             HHHHHHH-HHHHHHHHHHHhcCceEEEeeceeecCCcceeecceeEEeeccceecccccccccccCccceeehhhCcc-H
Confidence            1222333 3567778999999999999999999999999999999999999999999999999999999999999999 8


Q ss_pred             HHHHHHhcCCcccc
Q 026342          225 QQCLWWGLKKHVKC  238 (240)
Q Consensus       225 ~a~ellltG~~i~A  238 (240)
                      ...++.|||++++.
T Consensus       194 lg~YLgLTG~rl~G  207 (401)
T KOG1684|consen  194 LGLYLGLTGQRLSG  207 (401)
T ss_pred             HHHhhhhccceecc
Confidence            99999999999864

>KOG1682 consensus Enoyl-CoA isomerase [Lipid transport and metabolism]

Probab=99.96  E-value=4.6e-29  Score=203.44  Aligned_cols=159  Identities=27%  Similarity=0.390  Sum_probs=141.7

Q ss_pred             CCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccchhhhhhhhHHHH
Q 026342           78 GEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDL  157 (240)
Q Consensus        78 ~~~v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l  157 (240)
                      +++|..|+||+|+|+|.|+.+|+.+|.+.+....++.++|+|||+..| +.||+|.||+++..+...+..........++
T Consensus        39 ~~gvR~i~l~npKk~NtLSLaM~~~Lq~~ll~d~d~~dlr~viita~G-kifSaGH~LKELt~e~g~d~haevFqtc~dv  117 (287)
T KOG1682|consen   39 HNGVREITLNNPKKLNTLSLAMMCALQDALLKDKDNLDLRCVIITAQG-KIFSAGHNLKELTNEPGSDIHAEVFQTCTDV  117 (287)
T ss_pred             ccceeeeeecCccccchhhHHHHHHHHHHHhhcccccceeEEEEecCC-ccccccccHHHhhcCccchHHHHHHHHHHHH
Confidence            689999999999999999999999999999999999999999999999 8999999999987765443332222246788


Q ss_pred             HHHHHcCCCcEEEEECchhchhhHHHhhhcCEEEEeCCcEEecccccccccCCCchHHHHHhhcCHHHHHHHHhcCCccc
Q 026342          158 QVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVSTVQQCLWWGLKKHVK  237 (240)
Q Consensus       158 ~~~i~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~a~f~~pe~~~Gl~p~~g~~~~l~rlvG~~~a~ellltG~~i~  237 (240)
                      ++.|+++|+|+||.|||+|..+|+.|...||++||+++++|..|...+|+|....| .-|.|.+.+..|.+|++||.+|+
T Consensus       118 mn~Irn~pVPVia~VNG~AaAAGcQLVaSCD~vVa~k~SkF~tPG~~vGlFCSTPG-vAlaRavpRkva~~ML~Tg~Pi~  196 (287)
T KOG1682|consen  118 MNDIRNLPVPVIAKVNGYAAAAGCQLVASCDMVVATKNSKFSTPGAGVGLFCSTPG-VALARAVPRKVAAYMLMTGLPIT  196 (287)
T ss_pred             HHHHhcCCCceEEEecchhhhccceEEEeeeEEEEecCccccCCCCceeeEecCcc-hhHhhhcchhHHHHHHHhCCCCc
Confidence            99999999999999999999999999999999999999999999999999854422 45899999999999999999997


Q ss_pred             c
Q 026342          238 C  238 (240)
Q Consensus       238 A  238 (240)
                      +
T Consensus       197 ~  197 (287)
T KOG1682|consen  197 G  197 (287)
T ss_pred             h
Confidence            5

>cd07014 S49_SppA Signal peptide peptidase A

Probab=99.69  E-value=1.5e-16  Score=130.60  Aligned_cols=123  Identities=19%  Similarity=0.131  Sum_probs=97.1

Q ss_pred             HHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccchhhhhhhhHHHHHHHHHcCCCcEEEEECchhc
Q 026342           98 HTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAV  177 (240)
Q Consensus        98 ~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~IAav~G~a~  177 (240)
                      -.+.+|.++++++++|+++|+|||++     +|.|+|+....             .+.+++.++.+++||+||+++|.|.
T Consensus        22 ~~~~~l~~~l~~a~~d~~v~~vvl~~-----~~~gg~~~~~~-------------~~~~~i~~~~~~~kpVia~v~G~a~   83 (177)
T cd07014          22 VSGDTTAAQIRDARLDPKVKAIVLRV-----NSPGGSVTASE-------------VIRAELAAARAAGKPVVASGGGNAA   83 (177)
T ss_pred             cCHHHHHHHHHHHhcCCCceEEEEEe-----eCCCcCHHHHH-------------HHHHHHHHHHhCCCCEEEEECCchh
Confidence            45789999999999999999999986     57888765321             1334566788899999999999999


Q ss_pred             hhhHHHhhhcCEEEEeCCcEEecccccccccCCCchHH--------HHHhhcC--HHHHHHHHhcCCcccc
Q 026342          178 GGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSS--------IMSRLVS--TVQQCLWWGLKKHVKC  238 (240)
Q Consensus       178 GgG~~lal~~D~rias~~a~f~~pe~~~Gl~p~~g~~~--------~l~rlvG--~~~a~ellltG~~i~A  238 (240)
                      |+|+.|+++||+++++++++|+.+.+..+..+......        .+++..|  ..+.++++..|+.++|
T Consensus        84 g~g~~la~a~D~i~a~~~a~~~~~G~~~~~~~~~~~l~~~~~~~~~~v~~~rg~~~~~~~~~l~~g~~~~a  154 (177)
T cd07014          84 SGGYWISTPANYIVANPSTLVGSIGIFGVQLADQLSIENGYKRFITLVADNRHSTPEQQIDKIAQGGVWTG  154 (177)
T ss_pred             HHHHHHHHhCCEEEECCCCeEEEechHhhHHHHHHHHHHHHHHHHHHHHHhCCCCHHHhHHHhcCcCeEeH
Confidence            99999999999999999999999987766332211111        4455555  8889999988887765

Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is an intramembrane enzyme found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be ClpP-like serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain, cleaving peptide bonds in the plane of the lipid bilayer. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal p

>cd07020 Clp_protease_NfeD_1 Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease

Probab=99.64  E-value=3e-15  Score=123.97  Aligned_cols=130  Identities=18%  Similarity=0.177  Sum_probs=99.4

Q ss_pred             EEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccchhhhhhhhHHHHHHHH
Q 026342           82 AKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQI  161 (240)
Q Consensus        82 ~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~i  161 (240)
                      ++|.|+     ..++..+...+.++|+.+++++ ++.|+|.=.     |.|+++..                ...++.+|
T Consensus         2 ~vv~i~-----g~I~~~~~~~l~~~l~~a~~~~-~~~vvl~In-----SpGG~v~~----------------~~~i~~~l   54 (187)
T cd07020           2 YVLEIN-----GAITPATADYLERAIDQAEEGG-ADALIIELD-----TPGGLLDS----------------TREIVQAI   54 (187)
T ss_pred             EEEEEe-----eEEChHHHHHHHHHHHHHHhCC-CCEEEEEEE-----CCCCCHHH----------------HHHHHHHH
Confidence            456665     2366777888999999998765 677777521     33444321                12345677


Q ss_pred             HcCCCcEEEEEC---chhchhhHHHhhhcCEEEEeCCcEEecccccccccCCC--------------chHHHHHhhcCH-
Q 026342          162 RRLPKPVIAMVA---GYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAG--------------YGSSIMSRLVST-  223 (240)
Q Consensus       162 ~~~~kP~IAav~---G~a~GgG~~lal~~D~rias~~a~f~~pe~~~Gl~p~~--------------g~~~~l~rlvG~-  223 (240)
                      ..+|||+|++|+   |+|.|+|+.|+++||+++++++++|+.+++..+..+..              .....+++..|. 
T Consensus        55 ~~~~kPvia~v~~~~G~AasgG~~iala~D~iva~p~a~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~  134 (187)
T cd07020          55 LASPVPVVVYVYPSGARAASAGTYILLAAHIAAMAPGTNIGAAHPVAIGGGGGSDPVMEKKILNDAVAYIRSLAELRGRN  134 (187)
T ss_pred             HhCCCCEEEEEecCCCCchhHHHHHHHhCCceeECCCCcEEeccccccCCCCcchHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            899999999999   99999999999999999999999999999985544432              134468888898 


Q ss_pred             -HHHHHHHhcCCcccc
Q 026342          224 -VQQCLWWGLKKHVKC  238 (240)
Q Consensus       224 -~~a~ellltG~~i~A  238 (240)
                       .++++++++|+.|+|
T Consensus       135 ~~~a~~~l~~g~~~~a  150 (187)
T cd07020         135 AEWAEKAVRESLSLTA  150 (187)
T ss_pred             HHHHHHHHHcCCeecH
Confidence             799999999999876

Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially c

>cd07019 S49_SppA_1 Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad

Probab=99.52  E-value=7.5e-14  Score=117.69  Aligned_cols=89  Identities=21%  Similarity=0.249  Sum_probs=76.0

Q ss_pred             CCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccchhhhhhhhHHHHHHHHHcCCCcEEEEEC
Q 026342           94 AFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVA  173 (240)
Q Consensus        94 al~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~IAav~  173 (240)
                      ..+...+.+|.++|+++..|+++++|||+     .||.|+|+....             .+.+.+..+..++||+||+++
T Consensus        17 ~~~~~~~~~l~~~l~~a~~d~~v~~ivL~-----~~s~Gg~~~~~~-------------~~~~~l~~~~~~~kpVia~v~   78 (211)
T cd07019          17 TQGNVGGDTTAAQIRDARLDPKVKAIVLR-----VNSPGGSVTASE-------------VIRAELAAARAAGKPVVVSAG   78 (211)
T ss_pred             CCCccCHHHHHHHHHHHhhCCCceEEEEE-----EcCCCcCHHHHH-------------HHHHHHHHHHhCCCCEEEEEC
Confidence            33455789999999999999999999997     689999986531             123445678889999999999


Q ss_pred             chhchhhHHHhhhcCEEEEeCCcEEec
Q 026342          174 GYAVGGGHVLHMVCDLTIAADNAIFGQ  200 (240)
Q Consensus       174 G~a~GgG~~lal~~D~rias~~a~f~~  200 (240)
                      |.|.|+|+.|+++||++++++++.|+.
T Consensus        79 g~a~s~gy~la~~aD~i~a~~~a~~gs  105 (211)
T cd07019          79 GAAASGGYWISTPANYIVANPSTLTGS  105 (211)
T ss_pred             CeehhHHHHHHHhCCEEEEcCCCEEEE
Confidence            999999999999999999999999873

Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppAs in this subfamily are found in all three domains of life and are involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members, the E. coli SppA contains an amino-te

>cd07022 S49_Sppa_36K_type Signal peptide peptidase A (SppA) 36K type, a serine protease, has catalytic Ser-Lys dyad

Probab=99.37  E-value=4.7e-12  Score=106.96  Aligned_cols=96  Identities=23%  Similarity=0.216  Sum_probs=73.9

Q ss_pred             cCCCCCCCC-CHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccchhhhhhhhHHHHHHHHHcCC
Q 026342           87 NRPDRRNAF-RPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLP  165 (240)
Q Consensus        87 nrp~~~Nal-~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~  165 (240)
                      +++...|++ +..++.+|.++|+.+++|+++++|||+.     +|.|+++...        .     .+.+.+..+.. +
T Consensus        13 ~~~~~~~~~~~~~~~~~l~~~l~~a~~d~~i~~Vvl~~-----~s~gg~~~~~--------~-----~l~~~l~~~~~-~   73 (214)
T cd07022          13 PRGSWLEASSGLTSYEGIAAAIRAALADPDVRAIVLDI-----DSPGGEVAGV--------F-----ELADAIRAARA-G   73 (214)
T ss_pred             CCCCcccCCCCcccHHHHHHHHHHHhhCCCCcEEEEEE-----eCCCCcHHHH--------H-----HHHHHHHHHhc-C
Confidence            455555654 5689999999999999999999999975     3556554321        0     12222333334 5


Q ss_pred             CcEEEEECchhchhhHHHhhhcCEEEEeCCcEEecc
Q 026342          166 KPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQT  201 (240)
Q Consensus       166 kP~IAav~G~a~GgG~~lal~~D~rias~~a~f~~p  201 (240)
                      |||||+++|.|.|+|+.|+++||+++|++.+.|+..
T Consensus        74 KpViA~v~g~a~s~gy~lA~~aD~i~a~~~a~~g~i  109 (214)
T cd07022          74 KPIVAFVNGLAASAAYWIASAADRIVVTPTAGVGSI  109 (214)
T ss_pred             CCEEEEECCchhhHHHHHHhcCCEEEEcCCCeEEee
Confidence            999999999999999999999999999999998764

Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 36K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily are all bacterial and include sohB peptidase and protein C. These are sometimes referred to as 36K type since they contain only one domain, unlike E. coli SppA that also contains an amino-terminal domain. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases.

>cd07023 S49_Sppa_N_C Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad

Probab=99.35  E-value=4.4e-12  Score=106.60  Aligned_cols=87  Identities=26%  Similarity=0.386  Sum_probs=74.4

Q ss_pred             HHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccchhhhhhhhHHHHHHHHHcCCCcEEEEECchh
Q 026342           97 PHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYA  176 (240)
Q Consensus        97 ~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~IAav~G~a  176 (240)
                      ..++.+|.++|+.++.|+++++|||++     +|.|+|+...        .     .+.+.+..+..++||+||+++|.|
T Consensus        16 ~~~~~~l~~~l~~a~~d~~i~~ivl~~-----~s~Gg~~~~~--------~-----~i~~~i~~~~~~~kpvia~v~g~~   77 (208)
T cd07023          16 GIGADSLIEQLRKAREDDSVKAVVLRI-----NSPGGSVVAS--------E-----EIYREIRRLRKAKKPVVASMGDVA   77 (208)
T ss_pred             CCCHHHHHHHHHHHHhCCCCcEEEEEE-----ECCCCCHHHH--------H-----HHHHHHHHHHhcCCcEEEEECCcc
Confidence            679999999999999999999999987     3678887531        0     123456678888999999999999


Q ss_pred             chhhHHHhhhcCEEEEeCCcEEecc
Q 026342          177 VGGGHVLHMVCDLTIAADNAIFGQT  201 (240)
Q Consensus       177 ~GgG~~lal~~D~rias~~a~f~~p  201 (240)
                      .|+|+.|+++||++++++.+.|+..
T Consensus        78 ~s~g~~lA~aaD~i~a~~~s~~g~i  102 (208)
T cd07023          78 ASGGYYIAAAADKIVANPTTITGSI  102 (208)
T ss_pred             hhHHHHHHhhCCEEEECCCCeEEeC
Confidence            9999999999999999999998764

Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. This subfamily contains members with either a single domain (sometimes referred to as 36K type), such as sohB peptidase, protein C and archaeal signal peptide peptidase, or an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad

>cd00394 Clp_protease_like Caseinolytic protease (ClpP) is an ATP-dependent protease

Probab=99.23  E-value=4.7e-11  Score=96.12  Aligned_cols=93  Identities=25%  Similarity=0.304  Sum_probs=78.4

Q ss_pred             CCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccchhhhhhhhHHHHHHHHHcCCCcEEEEECc
Q 026342           95 FRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAG  174 (240)
Q Consensus        95 l~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~IAav~G  174 (240)
                      ++..++.+|.+.|+.++.|++++.|+|..     .|.|+|+..                ...+...+..++||+|+.++|
T Consensus         8 I~~~~~~~l~~~l~~a~~d~~~~~ivl~~-----~s~Gg~~~~----------------~~~i~~~l~~~~kpvva~~~g   66 (161)
T cd00394           8 IEDVSADQLAAQIRFAEADNSVKAIVLEV-----NTPGGRVDA----------------GMNIVDALQASRKPVIAYVGG   66 (161)
T ss_pred             EccchHHHHHHHHHHHHhCCCCceEEEEE-----ECCCcCHHH----------------HHHHHHHHHHhCCCEEEEECC
Confidence            55688999999999999999999999976     356666432                224556778889999999999


Q ss_pred             hhchhhHHHhhhcCEEEEeCCcEEeccccccccc
Q 026342          175 YAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSF  208 (240)
Q Consensus       175 ~a~GgG~~lal~~D~rias~~a~f~~pe~~~Gl~  208 (240)
                      .|.++|+.|+++||.|++.+++.|++..+..+..
T Consensus        67 ~~~s~g~~la~~~d~~~~~~~a~~~~~g~~~~~~  100 (161)
T cd00394          67 QAASAGYYIATAANKIVMAPGTRVGSHGPIGGYG  100 (161)
T ss_pred             hhHHHHHHHHhCCCEEEECCCCEEEEeeeEEecC
Confidence            9999999999999999999999999988876644

Clp protease (caseinolytic protease; ClpP; endopeptidase Clp; Peptidase S14; ATP-dependent protease, ClpAP)-like enzymes are highly conserved serine proteases and belong to the ClpP/Crotonase superfamily. Included in this family are Clp proteases that are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. The functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activity in the presence of ATP. Active site consists of the triad Ser, His and Asp, preferring hydrophobic or non-polar residues at P1 or P1' positions. The protease exists as a tetradec

>cd07016 S14_ClpP_1 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease

Probab=99.14  E-value=3.1e-10  Score=91.45  Aligned_cols=117  Identities=19%  Similarity=0.226  Sum_probs=85.4

Q ss_pred             HHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccchhhhhhhhHHHHHHHHHcCCCcEEEEECchhc
Q 026342           98 HTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAV  177 (240)
Q Consensus        98 ~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~IAav~G~a~  177 (240)
                      .+..++.+.|+.++.+..+ .+.|.+.|       +++.                ....+...|..++||+|+.++|.|.
T Consensus        15 ~~~~~~~~~l~~~~~~~~i-~l~inspG-------G~~~----------------~~~~i~~~i~~~~~pvi~~v~g~a~   70 (160)
T cd07016          15 VTAKEFKDALDALGDDSDI-TVRINSPG-------GDVF----------------AGLAIYNALKRHKGKVTVKIDGLAA   70 (160)
T ss_pred             cCHHHHHHHHHhccCCCCE-EEEEECCC-------CCHH----------------HHHHHHHHHHhcCCCEEEEEcchHH
Confidence            4677888888888877444 34445544       2221                1124567788899999999999999


Q ss_pred             hhhHHHhhhcCEEEEeCCcEEecccccccccCCCc---------------hHHHHHhhcC--HHHHHHHHhcCCcccc
Q 026342          178 GGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGY---------------GSSIMSRLVS--TVQQCLWWGLKKHVKC  238 (240)
Q Consensus       178 GgG~~lal~~D~rias~~a~f~~pe~~~Gl~p~~g---------------~~~~l~rlvG--~~~a~ellltG~~i~A  238 (240)
                      |+|+.|+++||+|+++++++|++.+...+..+...               ....+.+..|  ....++++..+..++|
T Consensus        71 s~g~~ia~a~d~~~~~~~a~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~~i~~~~~~~~~l~a  148 (160)
T cd07016          71 SAASVIAMAGDEVEMPPNAMLMIHNPSTGAAGNADDLRKAADLLDKIDESIANAYAEKTGLSEEEISALMDAETWLTA  148 (160)
T ss_pred             hHHHHHHhcCCeEEECCCcEEEEECCccccCcCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhCCeECcH
Confidence            99999999999999999999999877766443321               1223777788  6777888777766654

Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. This subfamily only contains bacterial sequences. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which a

>TIGR00706 SppA_dom signal peptide peptidase SppA, 36K type

Probab=99.13  E-value=3.1e-10  Score=95.43  Aligned_cols=84  Identities=25%  Similarity=0.455  Sum_probs=69.0

Q ss_pred             HHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccchhhhhhhhHHHHHHHHHcCC--CcEEEEECchh
Q 026342           99 TVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLP--KPVIAMVAGYA  176 (240)
Q Consensus        99 ~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~--kP~IAav~G~a  176 (240)
                      ...+|.++|+.+.+|+++++|||+..     |.|+|+..                ..++..+|.+++  ||+||.++|.|
T Consensus        14 s~~~l~~~l~~a~~d~~i~~vvl~~~-----s~Gg~~~~----------------~~~l~~~i~~~~~~kpvia~v~g~a   72 (207)
T TIGR00706        14 SPEDFDKKIKRIKDDKSIKALLLRIN-----SPGGTVVA----------------SEEIYEKLKKLKAKKPVVASMGGVA   72 (207)
T ss_pred             CHHHHHHHHHHHhhCCCccEEEEEec-----CCCCCHHH----------------HHHHHHHHHHhcCCCCEEEEECCcc
Confidence            35788999999999999999999974     66766542                123455677776  99999999999


Q ss_pred             chhhHHHhhhcCEEEEeCCcEEecccc
Q 026342          177 VGGGHVLHMVCDLTIAADNAIFGQTGP  203 (240)
Q Consensus       177 ~GgG~~lal~~D~rias~~a~f~~pe~  203 (240)
                      .|+|+.|+++||.++|++++.|+...+
T Consensus        73 ~s~g~~la~aaD~i~a~p~a~vg~iGv   99 (207)
T TIGR00706        73 ASGGYYIAMAADEIVANPGTITGSIGV   99 (207)
T ss_pred             chHHHHHHhcCCEEEECCCCeEEeeeE
Confidence            999999999999999999998876433

The member of this family from Bacillus subtilis was shown to have properties consistent with a role in degrading signal peptides after cleavage from precursor proteins, although it was not demonstrated conclusively.

>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type

Probab=99.08  E-value=5.1e-10  Score=107.38  Aligned_cols=143  Identities=18%  Similarity=0.198  Sum_probs=101.3

Q ss_pred             CCCEEEEEEcCCC--CCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccchhhhhhhhHH
Q 026342           78 GEGIAKITINRPD--RRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVL  155 (240)
Q Consensus        78 ~~~v~~Itlnrp~--~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~  155 (240)
                      ++.|++|.++.+=  ..|..+....+.+.+.++.+..|++||+|||+-..+     |++...        .+     .+.
T Consensus       307 ~~~vavI~~~G~I~~~~~~~~~~~~~~~~~~l~~a~~D~~VkaIVLrinSp-----GGs~~a--------se-----~i~  368 (584)
T TIGR00705       307 QDKIGIVHLEGPIADGRDTEGNTGGDTVAALLRVARSDPDIKAVVLRINSP-----GGSVFA--------SE-----IIR  368 (584)
T ss_pred             CCeEEEEEEEEEEcCCCCcccccCHHHHHHHHHHHhhCCCceEEEEEecCC-----CCCHHH--------HH-----HHH
Confidence            6789999998653  234444445677889999999999999999996432     222110        00     122


Q ss_pred             HHHHHHHcCCCcEEEEECchhchhhHHHhhhcCEEEEeCCcEE------eccc------ccccccCCCchHHHHHh----
Q 026342          156 DLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIF------GQTG------PKVGSFDAGYGSSIMSR----  219 (240)
Q Consensus       156 ~l~~~i~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~a~f------~~pe------~~~Gl~p~~g~~~~l~r----  219 (240)
                      +.+.++...+|||||.++|.|.+||+.++++||.++|++.+.+      +.+.      .++|+.+....+..+.+    
T Consensus       369 ~~i~~~~~~gKPVva~~~g~aaSggY~iA~aaD~I~a~p~t~~GSIGv~~~~~~~~~~l~klGi~~~~~~t~~~~~~s~~  448 (584)
T TIGR00705       369 RELARAQARGKPVIVSMGAMAASGGYWIASAADYIVASPNTITGSIGVFSVLPTFENSLDRIGVHVDGVSTHELANVSLL  448 (584)
T ss_pred             HHHHHHHhCCCcEEEEECCccccHHHHHHHhCCEEEECCCCeeecCEEEEEccCHHHHHHhcCCceEEEeccCcCCCCCC
Confidence            3345566778999999999999999999999999999999877      5553      57887765444333322    


Q ss_pred             ------------------------hcCHHH-----HHHHHhcCCcccc
Q 026342          220 ------------------------LVSTVQ-----QCLWWGLKKHVKC  238 (240)
Q Consensus       220 ------------------------lvG~~~-----a~ellltG~~i~A  238 (240)
                                              .|+..|     +.+.+..|+.+++
T Consensus       449 ~~~t~~~~~~~~~~l~~~y~~F~~~Va~~R~l~~e~v~~ia~Grv~tg  496 (584)
T TIGR00705       449 RPLTAEDQAIMQLSVEAGYRRFLSVVSAGRNLTPTQVDKVAQGRVWTG  496 (584)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHhCCCcCH
Confidence                                    566665     7778888887764

E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.

>cd07018 S49_SppA_67K_type Signal peptide peptidase A (SppA) 67K type, a serine protease, has catalytic Ser-Lys dyad

Probab=98.96  E-value=1.8e-09  Score=91.72  Aligned_cols=89  Identities=21%  Similarity=0.198  Sum_probs=72.7

Q ss_pred             CCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccchhhhhhhhHHHHHHHHHcCCCcEEEEECc
Q 026342           95 FRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAG  174 (240)
Q Consensus        95 l~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~IAav~G  174 (240)
                      -+..++.+|.++|+++..|++|++|||+..++ .| ++.+++++                .+.+..+...+|||||.++|
T Consensus        26 ~~~~~~~~l~~~l~~a~~d~~ik~vvL~~~s~-gg-~~~~~~el----------------~~~i~~~~~~~kpVia~~~~   87 (222)
T cd07018          26 SSELSLRDLLEALEKAAEDDRIKGIVLDLDGL-SG-GLAKLEEL----------------RQALERFRASGKPVIAYADG   87 (222)
T ss_pred             cCCccHHHHHHHHHHHhcCCCeEEEEEECCCC-CC-CHHHHHHH----------------HHHHHHHHHhCCeEEEEeCC
Confidence            45678899999999999999999999999884 45 55544432                23345566689999999998


Q ss_pred             hhchhhHHHhhhcCEEEEeCCcEEeccc
Q 026342          175 YAVGGGHVLHMVCDLTIAADNAIFGQTG  202 (240)
Q Consensus       175 ~a~GgG~~lal~~D~rias~~a~f~~pe  202 (240)
                       |.++|+.|+++||.+++.+.+.|+...
T Consensus        88 -~~sggy~lasaad~I~a~p~~~vg~iG  114 (222)
T cd07018          88 -YSQGQYYLASAADEIYLNPSGSVELTG  114 (222)
T ss_pred             -CCchhhhhhhhCCEEEECCCceEEeec
Confidence             889999999999999999999998743

Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 67K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily contain an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown that members in this subfamily, mostly bacterial, are serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys

>cd07021 Clp_protease_NfeD_like Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease

Probab=98.88  E-value=1.9e-08  Score=82.69  Aligned_cols=96  Identities=24%  Similarity=0.361  Sum_probs=73.9

Q ss_pred             EEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccchhhhhhhhHHHHHHHH
Q 026342           82 AKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQI  161 (240)
Q Consensus        82 ~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~i  161 (240)
                      .+|.++.     .+++.....|.++|+++++++ ++.|||.=.     |.|+++.                ....+...|
T Consensus         2 ~vi~i~g-----~I~~~~~~~l~~~l~~a~~~~-~~~ivl~in-----spGG~v~----------------~~~~I~~~l   54 (178)
T cd07021           2 YVIPIEG-----EIDPGLAAFVERALKEAKEEG-ADAVVLDID-----TPGGRVD----------------SALEIVDLI   54 (178)
T ss_pred             EEEEEee-----EECHHHHHHHHHHHHHHHhCC-CCeEEEEEE-----CcCCCHH----------------HHHHHHHHH
Confidence            3455542     366778888999999998886 566666532     2233332                123467788


Q ss_pred             HcCCCcEEEEECchhchhhHHHhhhcCEEEEeCCcEEeccccc
Q 026342          162 RRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPK  204 (240)
Q Consensus       162 ~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~a~f~~pe~~  204 (240)
                      .++++|+|+.|+|.|.++|+.++++||++++++++.|+.+++-
T Consensus        55 ~~~~~pvva~V~g~AaSaG~~ia~a~d~i~m~p~a~iG~~~~v   97 (178)
T cd07021          55 LNSPIPTIAYVNDRAASAGALIALAADEIYMAPGATIGAAEPI   97 (178)
T ss_pred             HhCCCCEEEEECCchHHHHHHHHHhCCeEEECCCCeEecCeeE
Confidence            9999999999999999999999999999999999999987553

Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentiall

>cd07015 Clp_protease_NfeD Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease

Probab=97.85  E-value=0.00017  Score=59.00  Aligned_cols=91  Identities=22%  Similarity=0.279  Sum_probs=69.9

Q ss_pred             CCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccchhhhhhhhHHHHHHHHHcCCCcEEEEEC
Q 026342           94 AFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVA  173 (240)
Q Consensus        94 al~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~IAav~  173 (240)
                      .+++.+...|.++++.+++| .++.|+|.=.     |.|+++..                ...+...|...++||++.|+
T Consensus         9 ~I~~~~~~~l~~~l~~A~~~-~~~~i~l~in-----SPGG~v~~----------------~~~I~~~i~~~~~pvv~~v~   66 (172)
T cd07015           9 QITSYTYDQFDRYITIAEQD-NAEAIIIELD-----TPGGRADA----------------AGNIVQRIQQSKIPVIIYVY   66 (172)
T ss_pred             EECHhHHHHHHHHHHHHhcC-CCCeEEEEEE-----CCCCCHHH----------------HHHHHHHHHhcCcCEEEEEe
Confidence            36677888889999998866 4677766532     33444321                12345677788999999999


Q ss_pred             ---chhchhhHHHhhhcCEEEEeCCcEEeccccccc
Q 026342          174 ---GYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVG  206 (240)
Q Consensus       174 ---G~a~GgG~~lal~~D~rias~~a~f~~pe~~~G  206 (240)
                         |.|..+|.-++++||.+++.+++.++...+-.|
T Consensus        67 p~g~~AaSag~~I~~a~~~i~m~p~s~iG~~~pi~~  102 (172)
T cd07015          67 PPGASAASAGTYIALGSHLIAMAPGTSIGACRPILG  102 (172)
T ss_pred             cCCCeehhHHHHHHHhcCceEECCCCEEEEcccccc
Confidence               999999999999999999999999998777543

Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially cle

>KOG1683 consensus Hydroxyacyl-CoA dehydrogenase/enoyl-CoA hydratase [Lipid transport and metabolism]

Probab=97.82  E-value=3.5e-06  Score=75.43  Aligned_cols=125  Identities=10%  Similarity=0.087  Sum_probs=100.4

Q ss_pred             CCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccchhhhhhhhHHHHH
Q 026342           79 EGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQ  158 (240)
Q Consensus        79 ~~v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~  158 (240)
                      .++..+.|+ |+ .|..|.++..+|..-++.+..+..+++.++++...+.|++|.|..+...... .........+++++
T Consensus        65 ~~~~~~dmv-ie-av~edl~Lk~~l~~~le~v~~~~~i~gsntSs~~~~~isa~ld~~e~vvg~h-~fspa~~m~LlEii  141 (380)
T KOG1683|consen   65 TGFANADMV-IE-AVFEDLELKHELFKSLEKVEPPKCIRGSNTSSLDINVISAGLDRPEMVVGMH-FFSPAHWMQLLEII  141 (380)
T ss_pred             cccccccee-cc-chhhhHHHHHHHHHHHHhhcCCcceeeeccccCChHHHhhccCchhhhcccc-ccCHHHHHHHHHHH
Confidence            477888888 66 6999999999999999999999999999999988889999999876543222 11122233577889


Q ss_pred             HHHHcCCCcEEEEECchhchhh--HHHhhhcCEEEEeC--CcEEeccccccc
Q 026342          159 VQIRRLPKPVIAMVAGYAVGGG--HVLHMVCDLTIAAD--NAIFGQTGPKVG  206 (240)
Q Consensus       159 ~~i~~~~kP~IAav~G~a~GgG--~~lal~~D~rias~--~a~f~~pe~~~G  206 (240)
                      ...+.++.|+.+|+||++--++  +-++.+|+|++.-.  .-..+..+...+
T Consensus       142 ~~~~tS~~~iA~Ain~~~~~gk~~vvVg~c~gf~v~r~l~~y~~~~~~~l~e  193 (380)
T KOG1683|consen  142 LALYTSKLTIATAINGGSPAGKLPVVVGNCCGFRVNRLLPPYTIGLNELLLE  193 (380)
T ss_pred             HhcCCCchHHHHHHhcccccCCccEEeccCCceEEEecccHHHHHHHHHHHH
Confidence            9999999999999999999998  88999999999973  333355666666

>PRK10949 protease 4; Provisional

Probab=97.64  E-value=0.001  Score=64.59  Aligned_cols=102  Identities=25%  Similarity=0.322  Sum_probs=72.3

Q ss_pred             CCCEEEEEEcC-----CCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccchhhhhhh
Q 026342           78 GEGIAKITINR-----PDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRL  152 (240)
Q Consensus        78 ~~~v~~Itlnr-----p~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~  152 (240)
                      ++.|++|.++-     ....+.++.   +.+.+.|+++.+|++||+|||+-..+     |+...        ..+     
T Consensus       325 ~~~Iavi~~~G~I~~g~~~~g~~~~---~~~~~~l~~a~~D~~vkaVvLrInSp-----GGs~~--------ase-----  383 (618)
T PRK10949        325 GGSIAVIFANGAIMDGEETPGNVGG---DTTAAQIRDARLDPKVKAIVLRVNSP-----GGSVT--------ASE-----  383 (618)
T ss_pred             CCeEEEEEEEEEEcCCCCcCCCcCH---HHHHHHHHHHHhCCCCcEEEEEecCC-----CCcHH--------HHH-----
Confidence            46677777752     222233444   46778889999999999999987643     32211        011     


Q ss_pred             hHHHHHHHHHcCCCcEEEEECchhchhhHHHhhhcCEEEEeCCcEEec
Q 026342          153 NVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQ  200 (240)
Q Consensus       153 ~~~~l~~~i~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~a~f~~  200 (240)
                      .+.+.+.++....||+||.+.+.|.-||.-++++||.++|.+.+..+.
T Consensus       384 ~i~~~i~~~r~~gKPVvas~~~~aASggY~iA~aad~I~a~p~t~tGS  431 (618)
T PRK10949        384 VIRAELAAARAAGKPVVVSMGGMAASGGYWISTPANYIVASPSTLTGS  431 (618)
T ss_pred             HHHHHHHHHHhcCCcEEEEECCCCccHHHHHHHhcCEEEECCCCceee
Confidence            122334455667899999999999999999999999999999877665

>PF01972 SDH_sah: Serine dehydrogenase proteinase; InterPro: IPR002825 This family of archaebacterial proteins, formerly known as DUF114, has been found to be a serine dehydrogenase proteinase distantly related to ClpP proteinases that belong to the serine proteinase superfamily

Probab=97.59  E-value=0.00096  Score=57.95  Aligned_cols=96  Identities=21%  Similarity=0.420  Sum_probs=76.7

Q ss_pred             CCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccchhhhhhhhHHHHHHHHHcCCCcEEEE
Q 026342           92 RNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAM  171 (240)
Q Consensus        92 ~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~IAa  171 (240)
                      .+-++.+..+++.++++....+..+- ++|...|       +++.                .-.++.+.+.+.+.++++.
T Consensus        69 ~~~I~i~dse~v~raI~~~~~~~~Id-Lii~TpG-------G~v~----------------AA~~I~~~l~~~~~~v~v~  124 (285)
T PF01972_consen   69 YRYIDIDDSEFVLRAIREAPKDKPID-LIIHTPG-------GLVD----------------AAEQIARALREHPAKVTVI  124 (285)
T ss_pred             ceeEcHhhHHHHHHHHHhcCCCCceE-EEEECCC-------CcHH----------------HHHHHHHHHHhCCCCEEEE
Confidence            35688889999999999888776653 4444333       2221                1124566788999999999


Q ss_pred             ECchhchhhHHHhhhcCEEEEeCCcEEecccccccccCCC
Q 026342          172 VAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAG  211 (240)
Q Consensus       172 v~G~a~GgG~~lal~~D~rias~~a~f~~pe~~~Gl~p~~  211 (240)
                      |+..|+-+|.-++++||-.++.+.+.+|--++++|-.|..
T Consensus       125 VP~~A~SAGTlIALaADeIvM~p~a~LGpiDPqi~~~pA~  164 (285)
T PF01972_consen  125 VPHYAMSAGTLIALAADEIVMGPGAVLGPIDPQIGQYPAA  164 (285)
T ss_pred             ECcccccHHHHHHHhCCeEEECCCCccCCCCccccCCChH
Confidence            9999999999999999999999999999999999988754

The family belong to MEROPS peptidase family S49; they are mostly unassigned peptidases but include the archaean signal peptide peptidase 1 []. The family has a catalytic triad of Ser, Asp, His residues, which shows an altered residue ordering compared with the ClpP proteinases but similar to that of the carboxypeptidase clan []. ; GO: 0016021 integral to membrane

>PRK07189 malonate decarboxylase subunit beta; Reviewed

Probab=97.55  E-value=0.0017  Score=57.44  Aligned_cols=111  Identities=20%  Similarity=0.320  Sum_probs=73.0

Q ss_pred             CEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCC----CeeEEEEeeCCCCCcccCCCccccccCCccchhhhhhhhHH
Q 026342           80 GIAKITINRPDRRNAFRPHTVKELIRAFNDARDDS----SVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVL  155 (240)
Q Consensus        80 ~v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~----~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~  155 (240)
                      .|+.+-.+..=..-++.......+.++++.+.++.    .+-+|.|.-.|      |+.+.+-    ........  ...
T Consensus        69 ~v~v~a~D~tf~GGS~G~~~g~Ki~r~~e~A~~~~~~~~~~PvV~l~dSG------GaRlqEg----~~~L~~~a--~i~  136 (301)
T PRK07189         69 PVVVAAQEGRFMGGSVGEVHGAKLAGALELAAEDNRNGIPTAVLLLFETG------GVRLQEA----NAGLAAIA--EIM  136 (301)
T ss_pred             EEEEEEECCCccCcCcCHHHHHHHHHHHHHHHHhCCCCCCCCEEEEecCC------CcCccch----HHHHHHHH--HHH
Confidence            35555555555678899999999999999887765    13455554433      3333321    00000001  111


Q ss_pred             HHHHHHHcCCCcEEEEECch--hchhhHHHhhhcCEEEEeCCcEEecccc
Q 026342          156 DLQVQIRRLPKPVIAMVAGY--AVGGGHVLHMVCDLTIAADNAIFGQTGP  203 (240)
Q Consensus       156 ~l~~~i~~~~kP~IAav~G~--a~GgG~~lal~~D~rias~~a~f~~pe~  203 (240)
                      ..+..+... +|+|+++-|.  |+||+..++.+||++|+++++.+++..+
T Consensus       137 ~~~~~ls~~-VP~I~vv~G~~gc~GG~a~~a~l~D~iIm~~~a~iglaGP  185 (301)
T PRK07189        137 RAIVDLRAA-VPVIGLIGGRVGCFGGMGIAAALCSYLIVSEEGRLGLSGP  185 (301)
T ss_pred             HHHHHHhCC-CCEEEEEcCCCCCcHHHHHHHhcCCEEEEECCcEEeccCH
Confidence            122234444 9999999999  9999999999999999999998888543

>cd07013 S14_ClpP Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease

Probab=97.55  E-value=0.00051  Score=55.55  Aligned_cols=89  Identities=17%  Similarity=0.154  Sum_probs=67.0

Q ss_pred             CCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccchhhhhhhhHHHHHHHHHcCCCcEEEEECc
Q 026342           95 FRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAG  174 (240)
Q Consensus        95 l~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~IAav~G  174 (240)
                      ++..+.+++.+.|..++.++.++.|+|.=.     |.|+++.                ....++..|..+++|+++.+.|
T Consensus         9 I~~~~~~~~~~~L~~l~~~~~~~~i~l~In-----SpGG~v~----------------~~~~i~~~i~~~~~~v~~~~~g   67 (162)
T cd07013           9 VEDISANQFAAQLLFLGAVNPEKDIYLYIN-----SPGGDVF----------------AGMAIYDTIKFIKADVVTIIDG   67 (162)
T ss_pred             ECcHHHHHHHHHHHHHhcCCCCCCEEEEEE-----CCCCcHH----------------HHHHHHHHHHhcCCCceEEEEe
Confidence            457888999999999998876666655432     3344321                1224566778889999999999


Q ss_pred             hhchhhHHHhhhcC--EEEEeCCcEEeccccc
Q 026342          175 YAVGGGHVLHMVCD--LTIAADNAIFGQTGPK  204 (240)
Q Consensus       175 ~a~GgG~~lal~~D--~rias~~a~f~~pe~~  204 (240)
                      .|.++|.-++++||  .|++.++++|.+....
T Consensus        68 ~aaS~~~~i~~a~~~g~r~~~p~a~~~ih~~~   99 (162)
T cd07013          68 LAASMGSVIAMAGAKGKRFILPNAMMMIHQPW   99 (162)
T ss_pred             ehhhHHHHHHHcCCCCcEEEecCEEEEEccCc
Confidence            99999999999999  6888888888765543

Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. Additionally, they are implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of proteas

>TIGR03133 malonate_beta malonate decarboxylase, beta subunit

Probab=97.48  E-value=0.0021  Score=56.21  Aligned_cols=110  Identities=18%  Similarity=0.303  Sum_probs=70.1

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCC----eeEEEEeeCCCCCcccCCCccccccCCccchhhhhhhhHHH
Q 026342           81 IAKITINRPDRRNAFRPHTVKELIRAFNDARDDSS----VGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLD  156 (240)
Q Consensus        81 v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~----v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~  156 (240)
                      |+.+-.+..=..-++....-+.+.++++.+.+|..    +-+|.|.-.|      |+.+.+-    ........  ....
T Consensus        61 v~v~a~D~t~~GGS~G~~~g~Ki~r~~e~A~~~~~~~~~~PvV~l~dSg------GaRlqEg----~~~L~~~a--~i~~  128 (274)
T TIGR03133        61 VVVAAQEGRFQGGSVGEVHGAKIVGALRLAIEDNRKGQPTAVVLLLDTG------GVRLQEA----NAGLIAIA--EIMR  128 (274)
T ss_pred             EEEEEECCCccCcCCCHHHHHHHHHHHHHHHhhhhccCCCCEEEEEcCC------CcChhhh----HHHHHHHH--HHHH
Confidence            45555555445678888888999999998876221    2355554333      3343321    00000001  1111


Q ss_pred             HHHHHHcCCCcEEEEECch--hchhhHHHhhhcCEEEEeCCcEEecccc
Q 026342          157 LQVQIRRLPKPVIAMVAGY--AVGGGHVLHMVCDLTIAADNAIFGQTGP  203 (240)
Q Consensus       157 l~~~i~~~~kP~IAav~G~--a~GgG~~lal~~D~rias~~a~f~~pe~  203 (240)
                      -..++... .|+|+++-|+  |.||+..++.+||++|+++++++++..+
T Consensus       129 ~~~~ls~~-vP~Isvv~Gp~gc~GG~a~~a~l~D~vim~~~a~i~~aGP  176 (274)
T TIGR03133       129 AILDARAA-VPVIGVIGGRVGCFGGMGIAAGLCSYLIMTEEGRLGLSGP  176 (274)
T ss_pred             HHHHHhCC-CCEEEEEeCCCCcchHHHHHHhcCCEEEEeCCcEEeccCH
Confidence            12334444 9999999999  8999999999999999999998888544

Members of this protein family are the beta subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase.

>CHL00198 accA acetyl-CoA carboxylase carboxyltransferase alpha subunit; Provisional

Probab=97.12  E-value=0.012  Score=52.63  Aligned_cols=96  Identities=15%  Similarity=0.168  Sum_probs=64.7

Q ss_pred             CCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccchhhhhhhhHHHHHHHHHcCCCcEEEE
Q 026342           92 RNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAM  171 (240)
Q Consensus        92 ~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~IAa  171 (240)
                      .-+++++-.....+.++.++...-.=+-++-+.|  +++ |.+-.+.         .... .+......+....+|+|++
T Consensus       132 ~G~~~p~g~rKa~Rlm~lA~~f~lPIItlvDTpG--A~~-G~~AE~~---------G~~~-aiar~l~~~a~~~VP~IsV  198 (322)
T CHL00198        132 FGMPSPGGYRKALRLMKHANKFGLPILTFIDTPG--AWA-GVKAEKL---------GQGE-AIAVNLREMFSFEVPIICT  198 (322)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHcCCCEEEEEeCCC--cCc-CHHHHHH---------hHHH-HHHHHHHHHHcCCCCEEEE
Confidence            5678899999999999988876433233334333  343 3221110         0011 2333455678899999999


Q ss_pred             ECchhchhhHHHhhhcCEEEEeCCcEEec
Q 026342          172 VAGYAVGGGHVLHMVCDLTIAADNAIFGQ  200 (240)
Q Consensus       172 v~G~a~GgG~~lal~~D~rias~~a~f~~  200 (240)
                      |-|.|.|||.-....||++++.+++.|+.
T Consensus       199 ViGeggsGGAlal~~aD~V~m~e~a~~sV  227 (322)
T CHL00198        199 IIGEGGSGGALGIGIGDSIMMLEYAVYTV  227 (322)
T ss_pred             EeCcccHHHHHhhhcCCeEEEeCCeEEEe
Confidence            99999888865556699999999999875

>PF00574 CLP_protease: Clp protease; InterPro: IPR001907 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.12  E-value=0.003  Score=51.76  Aligned_cols=91  Identities=23%  Similarity=0.300  Sum_probs=65.5

Q ss_pred             CCHHHHHHHHHHHHHhhhCCCee--EEEEeeCCCCCcccCCCccccccCCccchhhhhhhhHHHHHHHHHcCCCcEEEEE
Q 026342           95 FRPHTVKELIRAFNDARDDSSVG--VIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMV  172 (240)
Q Consensus        95 l~~~~~~~L~~~l~~~~~d~~v~--vvVltg~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~IAav  172 (240)
                      +|.++...+.+.|..++.++..+  .|.|.+.|       +|+.                ....+...|..++.|+++.+
T Consensus        25 I~~~~~~~~~~~L~~l~~~~~~~~i~i~INSpG-------G~v~----------------~g~~i~~~i~~~~~~v~t~~   81 (182)
T PF00574_consen   25 IDEESANRLISQLLYLENEDKNKPINIYINSPG-------GDVD----------------AGLAIYDAIRSSKAPVTTVV   81 (182)
T ss_dssp             BSHHHHHHHHHHHHHHHHHTSSSEEEEEEEECE-------BCHH----------------HHHHHHHHHHHSSSEEEEEE
T ss_pred             cCHHHHHHHHHHHHHHhccCCCceEEEEEcCCC-------CccH----------------HHHHHHHHHHhcCCCeEEEE
Confidence            78899999988887774322222  23345444       3321                12345678889999999999


Q ss_pred             CchhchhhHHHhhhcCE--EEEeCCcEEeccccccccc
Q 026342          173 AGYAVGGGHVLHMVCDL--TIAADNAIFGQTGPKVGSF  208 (240)
Q Consensus       173 ~G~a~GgG~~lal~~D~--rias~~a~f~~pe~~~Gl~  208 (240)
                      .|.|.+.|..++++||.  |++.+++.|.+.++..+..
T Consensus        82 ~G~aaSaa~~i~~ag~~~~R~~~~~s~~m~H~p~~~~~  119 (182)
T PF00574_consen   82 LGLAASAATLIFLAGDKGKRYASPNSRFMIHQPSTGSG  119 (182)
T ss_dssp             EEEEETHHHHHHHTSSTTTEEE-TT-EEEES-CEEEEE
T ss_pred             eCccccceehhhhcCCcCceeeeecCEEEeecceeecc
Confidence            99999999999999999  8999999999988876643

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase family S14 (ClpP endopeptidase family, clan SK). ClpP is an ATP-dependent protease that cleaves a number of proteins, such as casein and albumin []. It exists as a heterodimer of ATP-binding regulatory A and catalytic P subunits, both of which are required for effective levels of protease activity in the presence of ATP [], although the P subunit alone does possess some catalytic activity. This family of sequences represent the P subunit. Proteases highly similar to ClpP have been found to be encoded in the genome of bacteria, metazoa, some viruses and in the chloroplast of plants. A number of the proteins in this family are classified as non-peptidase homologues as they have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for catalytic activity. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2ZL3_L 2ZL0_F 2ZL2_M 2ZL4_C 1TG6_D 2F6I_D 3V5I_b 3V5E_M 3QWD_D 2DEO_A ....

>PRK12319 acetyl-CoA carboxylase subunit alpha; Provisional

Probab=97.07  E-value=0.016  Score=50.34  Aligned_cols=96  Identities=19%  Similarity=0.288  Sum_probs=66.5

Q ss_pred             CCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccchhhhhhhhHHHHHHHHHcCCCcEEEE
Q 026342           92 RNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAM  171 (240)
Q Consensus        92 ~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~IAa  171 (240)
                      .-+++++-.....+.++.+++..-.=+-++-+.|  ++. |.+-++         ....+ .+...+..+....+|+|++
T Consensus        76 ~G~~~~~g~rKa~R~~~lA~~~~lPvV~lvDtpG--a~~-g~~aE~---------~G~~~-~ia~~~~~~s~~~VP~IsV  142 (256)
T PRK12319         76 FGQPHPEGYRKALRLMKQAEKFGRPVVTFINTAG--AYP-GVGAEE---------RGQGE-AIARNLMEMSDLKVPIIAI  142 (256)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHcCCCEEEEEECCC--cCC-CHhHHh---------ccHHH-HHHHHHHHHhCCCCCEEEE
Confidence            4678899999999999988766433233334333  332 332110         00111 2334556778899999999


Q ss_pred             ECchhchhhHHHhhhcCEEEEeCCcEEec
Q 026342          172 VAGYAVGGGHVLHMVCDLTIAADNAIFGQ  200 (240)
Q Consensus       172 v~G~a~GgG~~lal~~D~rias~~a~f~~  200 (240)
                      |-|.|.|||......||++++.+++.|+.
T Consensus       143 I~G~~~gGgA~a~~~~D~v~m~~~a~~~v  171 (256)
T PRK12319        143 IIGEGGSGGALALAVADQVWMLENTMYAV  171 (256)
T ss_pred             EeCCcCcHHHHHhhcCCEEEEecCceEEE
Confidence            99999999888888999999999998875

>COG0616 SppA Periplasmic serine proteases (ClpP class) [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]

Probab=97.01  E-value=0.0037  Score=55.98  Aligned_cols=89  Identities=27%  Similarity=0.415  Sum_probs=62.7

Q ss_pred             HHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccchhhhhhhhHHHHHHHHHcCCCcEEEEECchhch
Q 026342           99 TVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVG  178 (240)
Q Consensus        99 ~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~IAav~G~a~G  178 (240)
                      -.+.+.+.|+.+..|+.++.|+|.=.     |.|+....        ..     .+.+.+.++..-. |+++.|++.|.-
T Consensus        81 ~~~~~~~~l~~~~~~~~vk~vvL~in-----SPGG~v~a--------s~-----~i~~~l~~l~~~~-PV~v~v~~~AAS  141 (317)
T COG0616          81 GGDDIEEILRAARADPSVKAVVLRIN-----SPGGSVVA--------SE-----LIARALKRLRAKK-PVVVSVGGYAAS  141 (317)
T ss_pred             cHHHHHHHHHHHhcCCCCceEEEEEE-----CcCCchhH--------HH-----HHHHHHHHHhhcC-CEEEEECCeecc
Confidence            35566777888889999999888643     22333211        00     1222233444433 999999999999


Q ss_pred             hhHHHhhhcCEEEEeCCcEEeccccccc
Q 026342          179 GGHVLHMVCDLTIAADNAIFGQTGPKVG  206 (240)
Q Consensus       179 gG~~lal~~D~rias~~a~f~~pe~~~G  206 (240)
                      ||.-++++||.+||++.+..|--.+..+
T Consensus       142 GGY~IA~aAd~I~a~p~si~GSIGVi~~  169 (317)
T COG0616         142 GGYYIALAADKIVADPSSITGSIGVISG  169 (317)
T ss_pred             hhhhhhccCCEEEecCCceeeeceeEEe
Confidence            9999999999999999999886555444

>PRK00277 clpP ATP-dependent Clp protease proteolytic subunit; Reviewed

Probab=96.96  E-value=0.0035  Score=52.44  Aligned_cols=88  Identities=15%  Similarity=0.125  Sum_probs=60.3

Q ss_pred             CCCHHHHHHHHHHHHHhhhCCCeeEE--EEeeCCCCCcccCCCccccccCCccchhhhhhhhHHHHHHHHHcCCCcEEEE
Q 026342           94 AFRPHTVKELIRAFNDARDDSSVGVI--ILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAM  171 (240)
Q Consensus        94 al~~~~~~~L~~~l~~~~~d~~v~vv--Vltg~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~IAa  171 (240)
                      .++..+...+...|..++.++..+-|  .|.+.|       +|+.                ....++..|...+.|+++.
T Consensus        39 ~I~~~~~~~i~~~L~~l~~~~~~~~I~l~InSpG-------G~v~----------------~g~~I~d~i~~~~~~v~t~   95 (200)
T PRK00277         39 EVEDHMANLIVAQLLFLEAEDPDKDIYLYINSPG-------GSVT----------------AGLAIYDTMQFIKPDVSTI   95 (200)
T ss_pred             EECHHHHHHHHHHHHHhhccCCCCCEEEEEECCC-------CcHH----------------HHHHHHHHHHhcCCCEEEE
Confidence            36788899999998888765433333  333333       3321                1123456677888899999


Q ss_pred             ECchhchhhHHHhhhcC--EEEEeCCcEEeccccc
Q 026342          172 VAGYAVGGGHVLHMVCD--LTIAADNAIFGQTGPK  204 (240)
Q Consensus       172 v~G~a~GgG~~lal~~D--~rias~~a~f~~pe~~  204 (240)
                      +.|.|.+.|..++++++  .|++.++++|.+..+.
T Consensus        96 ~~G~aaS~a~~I~~ag~~~~r~~~p~s~imih~p~  130 (200)
T PRK00277         96 CIGQAASMGAFLLAAGAKGKRFALPNSRIMIHQPL  130 (200)
T ss_pred             EEeEeccHHHHHHhcCCCCCEEEcCCceEEeccCc
Confidence            99999999999998754  5777777777665543

>cd07017 S14_ClpP_2 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease

Probab=96.89  E-value=0.0041  Score=50.63  Aligned_cols=92  Identities=17%  Similarity=0.161  Sum_probs=68.7

Q ss_pred             CCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccchhhhhhhhHHHHHHHHHcCCCcEEEEECc
Q 026342           95 FRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAG  174 (240)
Q Consensus        95 l~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~IAav~G  174 (240)
                      ++.+...++...+..++.++..+.|+|.=.     |.|+|+..                ...+...|...+.|+++.+.|
T Consensus        18 I~~~~~~~i~~~l~~~~~~~~~~~i~l~in-----SpGG~v~~----------------~~~i~~~l~~~~~~v~t~~~g   76 (171)
T cd07017          18 IDDEVANLIIAQLLYLESEDPKKPIYLYIN-----SPGGSVTA----------------GLAIYDTMQYIKPPVSTICLG   76 (171)
T ss_pred             EcHHHHHHHHHHHHHHHccCCCCceEEEEE-----CCCCCHHH----------------HHHHHHHHHhcCCCEEEEEEe
Confidence            567888899999999888765444444322     22333221                123455677789999999999


Q ss_pred             hhchhhHHHhhhcC--EEEEeCCcEEecccccccc
Q 026342          175 YAVGGGHVLHMVCD--LTIAADNAIFGQTGPKVGS  207 (240)
Q Consensus       175 ~a~GgG~~lal~~D--~rias~~a~f~~pe~~~Gl  207 (240)
                      .|.++|.-+++++|  .|++.+++.|.+.++..+.
T Consensus        77 ~aaS~~~~i~~~g~~~~r~~~~~a~~~~h~~~~~~  111 (171)
T cd07017          77 LAASMGALLLAAGTKGKRYALPNSRIMIHQPLGGA  111 (171)
T ss_pred             EehhHHHHHHHcCCCCCEEEccchHHHHcCCCccC
Confidence            99999999999999  7999999999888876553

Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activ

>PRK11778 putative inner membrane peptidase; Provisional

Probab=96.84  E-value=0.011  Score=53.10  Aligned_cols=104  Identities=19%  Similarity=0.179  Sum_probs=65.5

Q ss_pred             CCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccchhhhhhhhHHHH
Q 026342           78 GEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDL  157 (240)
Q Consensus        78 ~~~v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l  157 (240)
                      .+.|++|.++-+=..+ ....+.+++...++.+..+   ..|||+-..|     |+.+...        . .    ....
T Consensus        89 ~~~v~VI~~~G~I~~~-~~~~l~e~i~a~l~~A~~~---~aVvLridSp-----GG~v~~s--------~-~----a~~~  146 (330)
T PRK11778         89 KPRLFVLDFKGDIDAS-EVESLREEITAILAVAKPG---DEVLLRLESP-----GGVVHGY--------G-L----AASQ  146 (330)
T ss_pred             CCeEEEEEEEEEECCC-cchhhHHHHHHHHHhccCC---CeEEEEEeCC-----CCchhHH--------H-H----HHHH
Confidence            3568888887542111 1123445666656555433   4666665432     3332110        0 0    0111


Q ss_pred             HHHHHcCCCcEEEEECchhchhhHHHhhhcCEEEEeCCcEEecccc
Q 026342          158 QVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGP  203 (240)
Q Consensus       158 ~~~i~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~a~f~~pe~  203 (240)
                      +.++....||+|+.+++.|.-||.-|+++||-++|.+.+.++.-.+
T Consensus       147 l~~lr~~~kpVva~v~~~AASggY~iAsaAD~I~A~P~a~vGSIGV  192 (330)
T PRK11778        147 LQRLRDAGIPLTVAVDKVAASGGYMMACVADKIIAAPFAIVGSIGV  192 (330)
T ss_pred             HHHHHhcCCCEEEEECCchhhHHHHHHHhCCEEEECCCCeEEeeee
Confidence            3456778899999999999999999999999999999988876443

>PRK12553 ATP-dependent Clp protease proteolytic subunit; Reviewed

Probab=96.76  E-value=0.0066  Score=51.06  Aligned_cols=89  Identities=17%  Similarity=0.099  Sum_probs=66.1

Q ss_pred             CCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccchhhhhhhhHHHHHHHHHcCCCcEEEEECc
Q 026342           95 FRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAG  174 (240)
Q Consensus        95 l~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~IAav~G  174 (240)
                      ++..+..++.+.|..++.++..+.|+|.=.     |.|+++..                ...++..|..++.|+++.+.|
T Consensus        44 I~~~~~~~i~~~L~~l~~~~~~~~I~l~IN-----SpGG~v~~----------------g~~I~d~i~~~~~~v~t~~~G  102 (207)
T PRK12553         44 VDDASANDVMAQLLVLESIDPDRDITLYIN-----SPGGSVTA----------------GDAIYDTIQFIRPDVQTVCTG  102 (207)
T ss_pred             ECHHHHHHHHHHHHHHHhCCCCCCEEEEEe-----CCCCcHHH----------------HHHHHHHHHhcCCCcEEEEEe
Confidence            778999999999999887543333333211     22333221                224566778888999999999


Q ss_pred             hhchhhHHHhhhcC--EEEEeCCcEEeccccc
Q 026342          175 YAVGGGHVLHMVCD--LTIAADNAIFGQTGPK  204 (240)
Q Consensus       175 ~a~GgG~~lal~~D--~rias~~a~f~~pe~~  204 (240)
                      .|.+.|.-++++||  .|++.+++.|.+..+.
T Consensus       103 ~aaSaa~lI~~ag~~~~R~~~p~s~imiH~p~  134 (207)
T PRK12553        103 QAASAGAVLLAAGTPGKRFALPNARILIHQPS  134 (207)
T ss_pred             ehhhHHHHHHHcCCcCcEEECCCchhhhcCcc
Confidence            99999999999999  5999999999887765

>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type

Probab=96.68  E-value=0.0085  Score=58.01  Aligned_cols=85  Identities=19%  Similarity=0.199  Sum_probs=62.6

Q ss_pred             HHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccchhhhhhhhHHHHHHHHHcCCCcEEEEECchhc
Q 026342           98 HTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAV  177 (240)
Q Consensus        98 ~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~IAav~G~a~  177 (240)
                      ..+.++.++++.+.+|+.|++|||.-.+    +.|.++...        +     .+.+.+..+....|||||..++++ 
T Consensus        76 ~~l~~i~~~i~~A~~D~~IkgIvL~i~~----~~g~~~~~~--------~-----ei~~ai~~fk~sgKpVvA~~~~~~-  137 (584)
T TIGR00705        76 ISLFDIVNAIRQAADDRRIEGLVFDLSN----FSGWDSPHL--------V-----EIGSALSEFKDSGKPVYAYGTNYS-  137 (584)
T ss_pred             cCHHHHHHHHHHHhcCCCceEEEEEccC----CCCCCHHHH--------H-----HHHHHHHHHHhcCCeEEEEEcccc-
Confidence            4667899999999999999999999753    123332211        0     122334455567899999998876 


Q ss_pred             hhhHHHhhhcCEEEEeCCcEEec
Q 026342          178 GGGHVLHMVCDLTIAADNAIFGQ  200 (240)
Q Consensus       178 GgG~~lal~~D~rias~~a~f~~  200 (240)
                      -+|.-|+.+||-+++.+.+.+++
T Consensus       138 s~~YylAs~AD~I~~~p~G~v~~  160 (584)
T TIGR00705       138 QGQYYLASFADEIILNPMGSVDL  160 (584)
T ss_pred             chhhhhhhhCCEEEECCCceEEe
Confidence            57899999999999998877755

E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.

>TIGR00513 accA acetyl-CoA carboxylase, carboxyl transferase, alpha subunit

Probab=96.67  E-value=0.055  Score=48.33  Aligned_cols=96  Identities=19%  Similarity=0.175  Sum_probs=64.2

Q ss_pred             CCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccchhhhhhhhHHHHHHHHHcCCCcEEEE
Q 026342           92 RNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAM  171 (240)
Q Consensus        92 ~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~IAa  171 (240)
                      .-+++++-.....+.++.++.-.-.=+-++-+.|  +++ |.+.++.         ...+ .+...+..+....+|+|++
T Consensus       129 ~G~~~p~g~rKa~R~m~lA~~f~iPvVtlvDTpG--a~~-g~~aE~~---------G~~~-aia~~l~a~s~~~VP~IsV  195 (316)
T TIGR00513       129 FGMPAPEGYRKALRLMKMAERFKMPIITFIDTPG--AYP-GIGAEER---------GQSE-AIARNLREMARLGVPVICT  195 (316)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHcCCCEEEEEECCC--CCC-CHHHHHH---------HHHH-HHHHHHHHHHcCCCCEEEE
Confidence            4678899999999999988766433233333333  332 3222111         0011 2334566678999999999


Q ss_pred             ECchhchhhHHHhhhcCEEEEeCCcEEec
Q 026342          172 VAGYAVGGGHVLHMVCDLTIAADNAIFGQ  200 (240)
Q Consensus       172 v~G~a~GgG~~lal~~D~rias~~a~f~~  200 (240)
                      |-|.|.|||......||++++.+++.++.
T Consensus       196 ViGeggsGGAla~~~aD~v~m~~~a~~sV  224 (316)
T TIGR00513       196 VIGEGGSGGALAIGVGDKVNMLEYSTYSV  224 (316)
T ss_pred             EecccccHHHhhhccCCEEEEecCceEEe
Confidence            99999777775555699999999998875

The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the alpha chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.

>PF01039 Carboxyl_trans: Carboxyl transferase domain; InterPro: IPR000022 Members in this domain include biotin dependent carboxylases [, ]

Probab=96.66  E-value=0.015  Score=55.14  Aligned_cols=108  Identities=19%  Similarity=0.265  Sum_probs=71.6

Q ss_pred             EEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCC--CccccccCCccchhhhhhhhHHHHHH
Q 026342           82 AKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGG--DQALRTRDGYADYENFGRLNVLDLQV  159 (240)
Q Consensus        82 ~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~--Dl~~~~~~~~~~~~~~~~~~~~~l~~  159 (240)
                      .++..+.--...++.......+.++++.+.++.- -+|.|.-      |.|+  ++++-    ........+  ...-..
T Consensus        60 ~v~a~D~t~~gGs~g~~~~~Ki~ra~~~A~~~~~-P~v~l~d------sgGa~~r~~eg----~~~l~~~g~--i~~~~~  126 (493)
T PF01039_consen   60 VVIAQDFTVLGGSVGEVHGEKIARAIELALENGL-PLVYLVD------SGGAFLRMQEG----VESLMGMGR--IFRAIA  126 (493)
T ss_dssp             EEEEEETTSGGGTBSHHHHHHHHHHHHHHHHHTE-EEEEEEE------ESSBCGGGGGH----HHHHHHHHH--HHHHHH
T ss_pred             EEEEeccceecCCCCcccceeeehHHHHHHHcCC-CcEEecc------ccccccccchh----hhhhhhhHH--HHHHHH
Confidence            3444444445788999999999999999887754 3444433      2233  33321    111111111  222234


Q ss_pred             HHHcCCCcEEEEECchhchhhHHHhhhcCEEEEeCC-cEEecccc
Q 026342          160 QIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADN-AIFGQTGP  203 (240)
Q Consensus       160 ~i~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~-a~f~~pe~  203 (240)
                      ++.. ..|+|+++.|+|.|||..++..||++|+.++ +.+++..+
T Consensus       127 ~~~~-~iP~I~vv~G~~~Gg~A~~~~~~d~~i~~~~~a~i~l~GP  170 (493)
T PF01039_consen  127 RLSG-GIPQISVVTGPCTGGGAYLAALSDFVIMVKGTARIFLAGP  170 (493)
T ss_dssp             HHHT-TS-EEEEEESEEEGGGGHHHHHSSEEEEETTTCEEESSTH
T ss_pred             HHhc-CCCeEEEEccccccchhhcccccCccccCccceEEEeccc
Confidence            5566 9999999999999999999999999999998 88887443

The carboxyl transferase domain carries out the following reaction; transcarboxylation from biotin to an acceptor molecule. There are two recognised types of carboxyl transferase. One of them uses acyl-CoA and the other uses 2-oxo acid as the acceptor molecule of carbon dioxide. All of the members in this family utilise acyl-CoA as the acceptor molecule.; GO: 0016874 ligase activity; PDB: 2F9Y_B 1XO6_B 1XNV_B 3MFM_C 3IBB_A 1XNW_F 3IAV_B 1XNY_A 3IB9_A 3U9S_F ....

>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional

Probab=96.62  E-value=0.048  Score=53.45  Aligned_cols=96  Identities=18%  Similarity=0.205  Sum_probs=65.6

Q ss_pred             CCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccchhhhhhhhHHHHHHHHHcCCCcEEEE
Q 026342           92 RNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAM  171 (240)
Q Consensus        92 ~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~IAa  171 (240)
                      .-+++++-.....+.++.++...-.=+-++-+.|  +++ |.+.+..         ...+ .+......+....+|+|++
T Consensus       220 fG~~~peGyRKAlRlmkLAekfgLPIVtLVDTpG--A~p-G~~AEe~---------Gq~~-aIArnl~amasl~VP~ISV  286 (762)
T PLN03229        220 FGMPTPHGYRKALRMMYYADHHGFPIVTFIDTPG--AYA-DLKSEEL---------GQGE-AIAHNLRTMFGLKVPIVSI  286 (762)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHcCCCEEEEEECCC--cCC-CchhHHH---------hHHH-HHHHHHHHHhCCCCCEEEE
Confidence            5578888899999999888766433233344443  333 3222211         0111 2334456778999999999


Q ss_pred             ECchhchhhHHHhhhcCEEEEeCCcEEec
Q 026342          172 VAGYAVGGGHVLHMVCDLTIAADNAIFGQ  200 (240)
Q Consensus       172 v~G~a~GgG~~lal~~D~rias~~a~f~~  200 (240)
                      |-|.|.|||......||+++|.+++.|+.
T Consensus       287 ViGeggSGGAlA~g~aD~VlMle~A~~sV  315 (762)
T PLN03229        287 VIGEGGSGGALAIGCANKLLMLENAVFYV  315 (762)
T ss_pred             EeCCcchHHHHHhhcCCEEEEecCCeEEe
Confidence            99999888887777899999999988765

>PLN03230 acetyl-coenzyme A carboxylase carboxyl transferase; Provisional

Probab=96.60  E-value=0.047  Score=50.32  Aligned_cols=95  Identities=18%  Similarity=0.190  Sum_probs=63.1

Q ss_pred             CCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccchhhhhhhhHHHHHHHHHcCCCcEEEEE
Q 026342           93 NAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMV  172 (240)
Q Consensus        93 Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~IAav  172 (240)
                      .+++++-.....+.++.++...-.=+-++-..|  ++ .|.+-++.         .... .+......+..+.+|+|+.|
T Consensus       200 G~~~peGyRKAlR~mklAekf~lPIVtLVDTpG--A~-pG~~AEe~---------Gqa~-aIAr~l~ams~l~VPiISVV  266 (431)
T PLN03230        200 AMPQPNGYRKALRFMRHAEKFGFPILTFVDTPG--AY-AGIKAEEL---------GQGE-AIAFNLREMFGLRVPIIATV  266 (431)
T ss_pred             CCCCHHHHHHHHHHHHHHHHcCCCEEEEEeCCC--cC-CCHHHHHH---------hHHH-HHHHHHHHHhcCCCCEEEEE
Confidence            568899999999999988876433233333333  22 33222110         0111 23344667789999999999


Q ss_pred             CchhchhhHHHhhhcCEEEEeCCcEEec
Q 026342          173 AGYAVGGGHVLHMVCDLTIAADNAIFGQ  200 (240)
Q Consensus       173 ~G~a~GgG~~lal~~D~rias~~a~f~~  200 (240)
                      -|.+.+||.....+||+++|.+++.++.
T Consensus       267 iGeGgSGGAlalg~aD~VlMle~A~ysV  294 (431)
T PLN03230        267 IGEGGSGGALAIGCGNRMLMMENAVYYV  294 (431)
T ss_pred             eCCCCcHHHHHhhcCCEEEEecCCEEEe
Confidence            9999666655555799999999998765

>CHL00174 accD acetyl-CoA carboxylase beta subunit; Reviewed

Probab=96.52  E-value=0.064  Score=47.44  Aligned_cols=110  Identities=17%  Similarity=0.197  Sum_probs=71.1

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccchhhhhhhhHHHHHHH
Q 026342           81 IAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQ  160 (240)
Q Consensus        81 v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~  160 (240)
                      |+...++..=..-++....-+.+.++++.+.+.. +=+|++...|      |+.+.+    .........+  ....+..
T Consensus       135 v~v~a~Dftf~gGSmG~v~geKi~ra~e~A~~~r-lPlV~l~~SG------GARmQE----g~~sL~qmak--~saa~~~  201 (296)
T CHL00174        135 VALGVMDFQFMGGSMGSVVGEKITRLIEYATNES-LPLIIVCASG------GARMQE----GSLSLMQMAK--ISSALYD  201 (296)
T ss_pred             EEEEEECCcccccCcCHHHHHHHHHHHHHHHHcC-CCEEEEECCC------Cccccc----cchhhhhhHH--HHHHHHH
Confidence            4555555444577899999999999999887664 4466665544      344332    1100001111  1111222


Q ss_pred             -HHcCCCcEEEEECchhchhhHHH-hhhcCEEEEeCCcEEecccc
Q 026342          161 -IRRLPKPVIAMVAGYAVGGGHVL-HMVCDLTIAADNAIFGQTGP  203 (240)
Q Consensus       161 -i~~~~kP~IAav~G~a~GgG~~l-al~~D~rias~~a~f~~pe~  203 (240)
                       ...-..|.|+++.|+|.||+... ++.||++|+.+++.+++..+
T Consensus       202 ~~~~~~vP~Isvl~gPt~GG~aas~a~l~Diiiae~~A~IgfAGP  246 (296)
T CHL00174        202 YQSNKKLFYISILTSPTTGGVTASFGMLGDIIIAEPNAYIAFAGK  246 (296)
T ss_pred             HHHcCCCCEEEEEcCCCchHHHHHHHHcccEEEEeCCeEEEeeCH
Confidence             22457999999999999998776 67799999988998888554

>PRK05724 acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated

Probab=96.47  E-value=0.087  Score=47.13  Aligned_cols=95  Identities=20%  Similarity=0.256  Sum_probs=64.5

Q ss_pred             CCCCCHHHHHHHHHHHHHhhhCCCeeEEEE-eeCCCCCcccCCCccccccCCccchhhhhhhhHHHHHHHHHcCCCcEEE
Q 026342           92 RNAFRPHTVKELIRAFNDARDDSSVGVIIL-TGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIA  170 (240)
Q Consensus        92 ~Nal~~~~~~~L~~~l~~~~~d~~v~vvVl-tg~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~IA  170 (240)
                      .-+++++-.....+.++.++.-. +=+|-| -..|  +++ |.+-++.         ...+ .+...+..+....+|+|+
T Consensus       129 ~G~~~peg~rKa~R~m~lA~~f~-lPIVtlvDTpG--a~~-G~~aE~~---------G~~~-aia~~l~~~a~~~VP~Is  194 (319)
T PRK05724        129 FGMPRPEGYRKALRLMKMAEKFG-LPIITFIDTPG--AYP-GIGAEER---------GQSE-AIARNLREMARLKVPIIC  194 (319)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHcC-CCEEEEEeCCC--CCC-CHHHHhc---------cHHH-HHHHHHHHHhCCCCCEEE
Confidence            46788999999999998887654 334433 3333  333 4332210         0011 233456678899999999


Q ss_pred             EECchhchhhHHHhhhcCEEEEeCCcEEec
Q 026342          171 MVAGYAVGGGHVLHMVCDLTIAADNAIFGQ  200 (240)
Q Consensus       171 av~G~a~GgG~~lal~~D~rias~~a~f~~  200 (240)
                      +|-|.|.|||......||++++.+++.|+.
T Consensus       195 VIiGeg~sGGAla~~~aD~v~m~~~A~~sv  224 (319)
T PRK05724        195 TVIGEGGSGGALAIGVGDRVLMLEYSTYSV  224 (319)
T ss_pred             EEeCCccHHHHHHHhccCeeeeecCceEee
Confidence            999999887775555699999999998865

>TIGR00515 accD acetyl-CoA carboxylase, carboxyl transferase, beta subunit

Probab=96.45  E-value=0.073  Score=46.95  Aligned_cols=110  Identities=20%  Similarity=0.313  Sum_probs=72.2

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccchhhhhhhhHHHHHHH
Q 026342           81 IAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQ  160 (240)
Q Consensus        81 v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~  160 (240)
                      |+.+..|..-..-+++....+.+.++++.+.+.. +=+|.|.-.|      |+-+.+    .........  .......+
T Consensus       122 V~v~a~D~~f~gGSmg~~~geKi~r~~e~A~~~~-lPlV~l~dSg------GaRmqE----g~~sL~~~a--k~~~~~~~  188 (285)
T TIGR00515       122 IVVAVFDFAFMGGSMGSVVGEKFVRAIEKALEDN-CPLIIFSASG------GARMQE----ALLSLMQMA--KTSAALAK  188 (285)
T ss_pred             EEEEEEeccccCCCccHHHHHHHHHHHHHHHHcC-CCEEEEEcCC------Cccccc----chhHHHhHH--HHHHHHHH
Confidence            3444444444578899999999999999887653 4566665544      222221    110000111  11222345


Q ss_pred             HHcCCCcEEEEECchhchhhHH-HhhhcCEEEEeCCcEEecccc
Q 026342          161 IRRLPKPVIAMVAGYAVGGGHV-LHMVCDLTIAADNAIFGQTGP  203 (240)
Q Consensus       161 i~~~~kP~IAav~G~a~GgG~~-lal~~D~rias~~a~f~~pe~  203 (240)
                      +.....|.|+++-|+|.||+.. +++.+|++||.+++.+++...
T Consensus       189 ~~~~~vP~IsVv~gpt~GG~aas~a~~~D~iia~p~A~ig~aGp  232 (285)
T TIGR00515       189 MSERGLPYISVLTDPTTGGVSASFAMLGDLNIAEPKALIGFAGP  232 (285)
T ss_pred             HHcCCCCEEEEEeCCcchHHHHHHHhCCCEEEEECCeEEEcCCH
Confidence            6667899999999999999655 568999999999999888554

The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the beta chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.

>PRK05654 acetyl-CoA carboxylase subunit beta; Validated

Probab=96.28  E-value=0.095  Score=46.43  Aligned_cols=114  Identities=17%  Similarity=0.288  Sum_probs=73.8

Q ss_pred             CCCEEEEEEcCCC-CCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccchhhhhhhhHHH
Q 026342           78 GEGIAKITINRPD-RRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLD  156 (240)
Q Consensus        78 ~~~v~~Itlnrp~-~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~  156 (240)
                      ++.-..|.-|++. ..-+++....+.+.++++.+.+.. +=+|.|.-.|      |+.+.+    .........  ....
T Consensus       119 ~G~~V~v~a~D~~f~gGS~g~~~~eKi~r~~e~A~~~~-lPlV~l~dsg------GarmqE----gi~sL~~~a--k~~~  185 (292)
T PRK05654        119 EGMPVVLAVMDFSFMGGSMGSVVGEKIVRAVERAIEEK-CPLVIFSASG------GARMQE----GLLSLMQMA--KTSA  185 (292)
T ss_pred             CCEEEEEEEEecccccCCccHHHHHHHHHHHHHHHHcC-CCEEEEEcCC------Ccchhh----hhhHHHhHH--HHHH
Confidence            3433444444443 578999999999999999887764 5566666444      322221    110000011  1122


Q ss_pred             HHHHHHcCCCcEEEEECchhchhhHH-HhhhcCEEEEeCCcEEeccccc
Q 026342          157 LQVQIRRLPKPVIAMVAGYAVGGGHV-LHMVCDLTIAADNAIFGQTGPK  204 (240)
Q Consensus       157 l~~~i~~~~kP~IAav~G~a~GgG~~-lal~~D~rias~~a~f~~pe~~  204 (240)
                      .+.++.....|.|+++-|+|.||+.. +++.+|++||.+++.+++...+
T Consensus       186 a~~~~~~a~vP~IsVv~gpt~GG~aas~a~~~D~iia~p~A~ig~aGpr  234 (292)
T PRK05654        186 ALKRLSEAGLPYISVLTDPTTGGVSASFAMLGDIIIAEPKALIGFAGPR  234 (292)
T ss_pred             HHHHHHcCCCCEEEEEeCCCchHHHHHHHHcCCEEEEecCcEEEecCHH
Confidence            23455667899999999999999755 5778999999999988885543

>PRK14512 ATP-dependent Clp protease proteolytic subunit; Provisional

Probab=96.25  E-value=0.031  Score=46.65  Aligned_cols=89  Identities=13%  Similarity=0.103  Sum_probs=62.6

Q ss_pred             CCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccchhhhhhhhHHHHHHHHHcCCCcEEEEECc
Q 026342           95 FRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAG  174 (240)
Q Consensus        95 l~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~IAav~G  174 (240)
                      ++..+...+.+.|..++..+..+.|+|.=.     |.|+++.                ....++..|...+.||++.+.|
T Consensus        32 I~~~~~~~i~~~L~~l~~~~~~~~I~l~IN-----SpGG~v~----------------ag~aI~d~i~~~~~~V~t~v~G   90 (197)
T PRK14512         32 INKDLSELFQEKILLLEALDSKKPIFVYID-----SEGGDID----------------AGFAIFNMIRFVKPKVFTIGVG   90 (197)
T ss_pred             EcHHHHHHHHHHHHHHHhcCCCCCEEEEEE-----CCCCCHH----------------HHHHHHHHHHhCCCCEEEEEEe
Confidence            667888888888877776222233333211     2233321                1224566778899999999999


Q ss_pred             hhchhhHHHhhhcCE--EEEeCCcEEeccccc
Q 026342          175 YAVGGGHVLHMVCDL--TIAADNAIFGQTGPK  204 (240)
Q Consensus       175 ~a~GgG~~lal~~D~--rias~~a~f~~pe~~  204 (240)
                      .|.+.|.-++++||-  |++.+++.|.+..+.
T Consensus        91 ~AaSaaslIl~ag~~~~R~~~p~s~imiHqP~  122 (197)
T PRK14512         91 LVASAAALIFLAAKKESRFSLPNARYLLHQPL  122 (197)
T ss_pred             eeHhHHHHHHhcCCcCceeECCCCcEEEEcCc
Confidence            999999999999985  999999988765554

>PRK10949 protease 4; Provisional

Probab=95.84  E-value=0.039  Score=53.73  Aligned_cols=85  Identities=20%  Similarity=0.301  Sum_probs=60.6

Q ss_pred             HHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccchhhhhhhhHHHHHHHHHcCCCcEEEEECchhc
Q 026342           98 HTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAV  177 (240)
Q Consensus        98 ~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~IAav~G~a~  177 (240)
                      -.+.++.++++.+..|+.|++|||.-.++   . |..+.        ..+     .+.+.+..+....||+||.-+.++ 
T Consensus        95 ~~l~div~~i~~Aa~D~rIkgivL~i~s~---g-G~~~a--------~~~-----eI~~ai~~fk~sGKpVvA~~~~~~-  156 (618)
T PRK10949         95 NSLFDIVNTIRQAKDDRNITGIVLDLKNF---A-GADQP--------SMQ-----YIGKALREFRDSGKPVYAVGDSYS-  156 (618)
T ss_pred             ccHHHHHHHHHHHhcCCCceEEEEEeCCC---C-CccHH--------HHH-----HHHHHHHHHHHhCCeEEEEecCcc-
Confidence            45678999999999999999999998652   1 22111        000     122334455667899999755554 


Q ss_pred             hhhHHHhhhcCEEEEeCCcEEec
Q 026342          178 GGGHVLHMVCDLTIAADNAIFGQ  200 (240)
Q Consensus       178 GgG~~lal~~D~rias~~a~f~~  200 (240)
                      -++.-||.+||-+++.+.+.+++
T Consensus       157 s~~YyLASaAD~I~l~P~G~v~~  179 (618)
T PRK10949        157 QGQYYLASFANKIYLSPQGVVDL  179 (618)
T ss_pred             chhhhhhhhCCEEEECCCceEEE
Confidence            56899999999999998877765

>PLN02820 3-methylcrotonyl-CoA carboxylase, beta chain

Probab=95.72  E-value=0.23  Score=48.01  Aligned_cols=111  Identities=23%  Similarity=0.343  Sum_probs=69.1

Q ss_pred             EEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccchhhhhhhhHHHHHHHH
Q 026342           82 AKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQI  161 (240)
Q Consensus        82 ~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~i  161 (240)
                      +.+-.|..=+..+++....+.+.++++.+.+.. +-+|.|.-.|      |+.+.+ ............+  ...-..++
T Consensus       132 ~v~a~D~tv~GGs~g~~~~~Ki~r~~elA~~~~-lPlV~l~DSg------Garl~~-q~e~~~~~~~~g~--if~~~~~l  201 (569)
T PLN02820        132 MFVANDPTVKGGTYYPITVKKHLRAQEIAAQCR-LPCIYLVDSG------GANLPR-QAEVFPDRDHFGR--IFYNQARM  201 (569)
T ss_pred             EEEEECCCccCCCCCHHHHHHHHHHHHHHHHcC-CCEEEEEeCC------CcCCcc-cccccchHhHHHH--HHHHHHHH
Confidence            334334333578999999999999999887764 3455554333      333321 0000000001111  11112335


Q ss_pred             HcCCCcEEEEECchhchhhHHHhhhcCEEEEeCC-cEEeccc
Q 026342          162 RRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADN-AIFGQTG  202 (240)
Q Consensus       162 ~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~-a~f~~pe  202 (240)
                      ....+|.|++|-|.|.|||..+..+||++|++++ +.+++..
T Consensus       202 s~~~VP~Isvv~G~~~gGgAy~~a~~D~vim~~~~a~i~~aG  243 (569)
T PLN02820        202 SSAGIPQIALVLGSCTAGGAYVPAMADESVIVKGNGTIFLAG  243 (569)
T ss_pred             hCCCCCEEEEEeCCCChHHHHHHHhCCceEEecCCcEEEecC
Confidence            5567999999999999999999999999999975 6666643

>TIGR01117 mmdA methylmalonyl-CoA decarboxylase alpha subunit

Probab=95.53  E-value=0.22  Score=47.52  Aligned_cols=108  Identities=16%  Similarity=0.198  Sum_probs=66.9

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccchhhhhhhhHHHHHHH
Q 026342           81 IAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQ  160 (240)
Q Consensus        81 v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~  160 (240)
                      |+.+-.+..=+.-++.....+.+.++++.+.++.- -+|.|.-.|      |+.+.+-    ......+.+. +..  ..
T Consensus        84 v~v~a~D~t~~gGS~g~~~~~K~~r~~e~A~~~~l-PlV~l~dSg------Garm~eg----~~~l~~~~~~-~~~--~~  149 (512)
T TIGR01117        84 VYAFAQDFTVMGGSLGEMHAAKIVKIMDLAMKMGA-PVVGLNDSG------GARIQEA----VDALKGYGDI-FYR--NT  149 (512)
T ss_pred             EEEEEECCcccccCCCHHHHHHHHHHHHHHHHcCC-CEEEEecCC------CCCcccc----chhhhhHHHH-HHH--HH
Confidence            34444443335778999999999999998877654 344444322      3333221    0000011110 111  12


Q ss_pred             HHcCCCcEEEEECchhchhhHHHhhhcCEEEEeCC-cEEeccc
Q 026342          161 IRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADN-AIFGQTG  202 (240)
Q Consensus       161 i~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~-a~f~~pe  202 (240)
                      ..+-..|.|+++-|+|.||+......||++|+.++ +.+++..
T Consensus       150 ~~s~~iP~Isvv~G~~~GG~a~~~al~D~vim~~~~a~i~~aG  192 (512)
T TIGR01117       150 IASGVVPQISAIMGPCAGGAVYSPALTDFIYMVDNTSQMFITG  192 (512)
T ss_pred             HHcCCCcEEEEEecCCCcHHHHHHHhcCceEEeccceEEEecC
Confidence            23345899999999999999888889999999987 4566643

This model describes methymalonyl-CoA decarboxylase aplha subunit in archaea and bacteria. Metylmalonyl-CoA decarboxylase Na+ pump is a representative of a class of Na+ transport decarboxylases that couples the energy derived by decarboxylation of carboxylic acid substrates to drive the extrusion of Na+ ion across the membrane.

>CHL00028 clpP ATP-dependent Clp protease proteolytic subunit

Probab=95.48  E-value=0.18  Score=42.26  Aligned_cols=89  Identities=12%  Similarity=0.085  Sum_probs=66.8

Q ss_pred             CCHHHHHHHHHHHHHhhhCCCeeEE--EEeeCCCCCcccCCCccccccCCccchhhhhhhhHHHHHHHHHcCCCcEEEEE
Q 026342           95 FRPHTVKELIRAFNDARDDSSVGVI--ILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMV  172 (240)
Q Consensus        95 l~~~~~~~L~~~l~~~~~d~~v~vv--Vltg~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~IAav  172 (240)
                      +|.++..++...|-.++.++..+-|  .|.+.|       +|+..                ...++..|...+.||...+
T Consensus        39 i~~~~a~~ii~~ll~L~~~~~~~~I~l~INSpG-------G~v~~----------------g~aIyd~m~~~~~~V~Tv~   95 (200)
T CHL00028         39 VDDEIANQLIGLMVYLSIEDDTKDLYLFINSPG-------GSVIS----------------GLAIYDTMQFVKPDVHTIC   95 (200)
T ss_pred             ecHHHHHHHHHHHHHHhccCCCCCEEEEEeCCC-------cchhh----------------HHHHHHHHHhcCCCEEEEE
Confidence            8889999999998888754333333  334433       33211                1235667888899999999


Q ss_pred             CchhchhhHHHhhhcC--EEEEeCCcEEeccccccc
Q 026342          173 AGYAVGGGHVLHMVCD--LTIAADNAIFGQTGPKVG  206 (240)
Q Consensus       173 ~G~a~GgG~~lal~~D--~rias~~a~f~~pe~~~G  206 (240)
                      .|.|.+.|.-|++++|  -|++.++++|.+..+..|
T Consensus        96 ~G~AaS~aslIl~aG~kg~R~~~p~s~imiHqp~~~  131 (200)
T CHL00028         96 LGLAASMASFILAGGEITKRLAFPHARVMIHQPASS  131 (200)
T ss_pred             EEehHHHHHHHHhCCCCCCEEecCCCeEEEecCccC
Confidence            9999999999999999  699999999988777655

>TIGR01117 mmdA methylmalonyl-CoA decarboxylase alpha subunit

Probab=95.48  E-value=0.27  Score=47.00  Aligned_cols=106  Identities=15%  Similarity=0.180  Sum_probs=69.9

Q ss_pred             EEEEEcCCC-CCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccchhhhhhhhHHHHHHH
Q 026342           82 AKITINRPD-RRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQ  160 (240)
Q Consensus        82 ~~Itlnrp~-~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~  160 (240)
                      .-|.=|+|. ..-+++++..+...+.++.+.+. ++=+|.|.-.+  .|..|.+-+         .....+ ...+++.+
T Consensus       317 V~vvAnd~~~~~G~~~~~~~~K~~r~i~~a~~~-~lPlV~lvDs~--G~~~g~~~E---------~~g~~~-~~a~~~~a  383 (512)
T TIGR01117       317 VGIIANQPKVMAGCLDIDSSDKIARFIRFCDAF-NIPIVTFVDVP--GFLPGVNQE---------YGGIIR-HGAKVLYA  383 (512)
T ss_pred             EEEEEeccccccCCCCHHHHHHHHHHHHHHHHc-CCCEEEEEeCc--CccccHHHH---------HHHHHH-HHHHHHHH
Confidence            333344443 35679999999999999988765 34555555443  255443311         011111 23456778


Q ss_pred             HHcCCCcEEEEECchhchhhHHHhh----hcCEEEEeCCcEEec
Q 026342          161 IRRLPKPVIAMVAGYAVGGGHVLHM----VCDLTIAADNAIFGQ  200 (240)
Q Consensus       161 i~~~~kP~IAav~G~a~GgG~~lal----~~D~rias~~a~f~~  200 (240)
                      +.+..+|.|+.|-|.+.|||+.-+.    .+|+++|.+++.++.
T Consensus       384 ~~~~~vP~isvi~g~~~Gga~~am~~~~~~~d~~~a~p~a~~~v  427 (512)
T TIGR01117       384 YSEATVPKVTIITRKAYGGAYLAMCSKHLGADQVYAWPTAEIAV  427 (512)
T ss_pred             HHhCCCCEEEEEcCCCchHHHHHhccccCCCCEEEEcCCCeEee
Confidence            8889999999999999888654333    289999988888765

This model describes methymalonyl-CoA decarboxylase aplha subunit in archaea and bacteria. Metylmalonyl-CoA decarboxylase Na+ pump is a representative of a class of Na+ transport decarboxylases that couples the energy derived by decarboxylation of carboxylic acid substrates to drive the extrusion of Na+ ion across the membrane.

>TIGR00493 clpP ATP-dependent Clp protease, proteolytic subunit ClpP

Probab=95.25  E-value=0.14  Score=42.50  Aligned_cols=91  Identities=14%  Similarity=0.092  Sum_probs=62.4

Q ss_pred             CCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccchhhhhhhhHHHHHHHHHcCCCcEEEEECc
Q 026342           95 FRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAG  174 (240)
Q Consensus        95 l~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~IAav~G  174 (240)
                      ++..+..++...|..++.++..+-|+|.=.     |.|+|+.                ....++..|...+.|+...+.|
T Consensus        35 I~~~~~~~ii~~L~~l~~~~~~~~i~l~In-----SpGG~v~----------------~g~~I~d~l~~~~~~v~t~~~G   93 (191)
T TIGR00493        35 VNDSVANLIVAQLLFLEAEDPEKDIYLYIN-----SPGGSIT----------------AGLAIYDTMQFIKPDVSTICIG   93 (191)
T ss_pred             EChHHHHHHHHHHHHhhccCCCCCEEEEEE-----CCCCCHH----------------HHHHHHHHHHhcCCCEEEEEEE
Confidence            667778888888888876554343333221     2244431                1123455677777788888889


Q ss_pred             hhchhhHHHhhhcC--EEEEeCCcEEeccccccc
Q 026342          175 YAVGGGHVLHMVCD--LTIAADNAIFGQTGPKVG  206 (240)
Q Consensus       175 ~a~GgG~~lal~~D--~rias~~a~f~~pe~~~G  206 (240)
                      .|.+.|.-+++++|  .|++.+++.|.+.++..|
T Consensus        94 ~AaSaaslI~~aG~~~~r~~~p~s~imiH~p~~~  127 (191)
T TIGR00493        94 QAASMGAFLLSAGAKGKRFSLPNSRIMIHQPLGG  127 (191)
T ss_pred             eeccHHHHHHhcCCCCcEEecCCceEEEecCccc
Confidence            99999999998766  599999999988776544

This model for the proteolytic subunit ClpP has been rebuilt to a higher stringency. In every bacterial genome with the ClpXP machine, a ClpP protein will be found that scores with this model. In general, this ClpP member will be encoded adjacent to the clpX gene, as were all examples used in the seed alignment. A large fraction of genomes have one or more additional ClpP paralogs, sometimes encoded nearby and sometimes elsewhere. The stringency of the trusted cutoff used here excludes the more divergent ClpP paralogs from being called authentic ClpP by this model.

>COG1030 NfeD Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones]

Probab=95.07  E-value=0.2  Score=46.51  Aligned_cols=101  Identities=22%  Similarity=0.305  Sum_probs=74.8

Q ss_pred             CCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccchhhhhhhhHHHH
Q 026342           78 GEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDL  157 (240)
Q Consensus        78 ~~~v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l  157 (240)
                      +..|..+.++     +++++.+.+.+.+.++.++++.. .++||.=.-|.    |.+                 ....++
T Consensus        25 ~~~v~vi~i~-----g~I~~~s~~~l~r~l~~A~~~~a-~~vvl~ldTPG----Gl~-----------------~sm~~i   77 (436)
T COG1030          25 EKKVYVIEID-----GAIDPASADYLQRALQSAEEENA-AAVVLELDTPG----GLL-----------------DSMRQI   77 (436)
T ss_pred             CCeEEEEEec-----CccCHHHHHHHHHHHHHHHhCCC-cEEEEEecCCC----chH-----------------HHHHHH
Confidence            4567778885     56999999999999999988763 34444322110    110                 024467


Q ss_pred             HHHHHcCCCcEEEEEC---chhchhhHHHhhhcCEEEEeCCcEEecccccc
Q 026342          158 QVQIRRLPKPVIAMVA---GYAVGGGHVLHMVCDLTIAADNAIFGQTGPKV  205 (240)
Q Consensus       158 ~~~i~~~~kP~IAav~---G~a~GgG~~lal~~D~rias~~a~f~~pe~~~  205 (240)
                      .++|.+.+.|++..+.   +.|.-+|.-++++||+..|++.+.++-..+-.
T Consensus        78 v~~i~~s~vPV~~yv~p~ga~AaSAGtyI~m~~hiaaMAPgT~iGaa~Pi~  128 (436)
T COG1030          78 VRAILNSPVPVIGYVVPDGARAASAGTYILMATHIAAMAPGTNIGAATPIA  128 (436)
T ss_pred             HHHHHcCCCCEEEEEcCCCcchhchhhHHHHhcChhhhCCCCcccccceec
Confidence            8899999999888883   46999999999999999999999988755443

>PF01343 Peptidase_S49: Peptidase family S49 peptidase classification

Probab=94.88  E-value=0.035  Score=44.31  Aligned_cols=44  Identities=30%  Similarity=0.418  Sum_probs=32.9

Q ss_pred             HcCCCcEEEEECchhchhhHHHhhhcCEEEEeCCcEEecccccc
Q 026342          162 RRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKV  205 (240)
Q Consensus       162 ~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~a~f~~pe~~~  205 (240)
                      .+..|||||.++|.+..+|.-|+.+||-+++.+.+.++...+..
T Consensus         3 ~~~~KpV~a~~~~~~~S~~Y~lAs~ad~I~~~p~s~vgsiGv~~   46 (154)
T PF01343_consen    3 KASGKPVVAYAEGYAASGAYYLASAADEIYANPSSSVGSIGVSA   46 (154)
T ss_dssp             HHTT--EEEEEEEEEETHHHHHHTTSSEEEE-TT-EEE---EEE
T ss_pred             cccCCeEEEEECCcchhHHHHHHHcCCEEEecCCCEEEEeChhh
Confidence            46789999999999999999999999999999998887754443

; InterPro: IPR002142 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S49 (protease IV family, clan S-). The predicted active site serine for members of this family occurs in a transmembrane domain. The domain defines sequences in viruses, archaea, bacteria and plants. These sequences are variously annotated in the different taxonomic groups, examples are: Viruses: capsid protein Archaea: proteinase IV homolog Bacteria: proteinase IV, sohB, SppA, pfaP, putative protease Plants: SppA, protease IV This group also contains proteins classified as non-peptidase homologues that either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity of peptidases. Related proteins, non-peptidase homologs and unclassified S49 members are also to be found in IPR002810 from INTERPRO.; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 3RST_B 3BEZ_D 3BF0_A.

>COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism]

Probab=94.77  E-value=0.13  Score=48.90  Aligned_cols=103  Identities=17%  Similarity=0.216  Sum_probs=67.6

Q ss_pred             EEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccchhhhhhhhHHHHHHHHHc
Q 026342           84 ITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRR  163 (240)
Q Consensus        84 Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~i~~  163 (240)
                      ..-+.+.+.-++.+-..+.+.++.+.+.++..-.+.+..+.       |+.+.+-    ......+.+  ...-..++..
T Consensus        96 ~a~D~TV~gGt~~~~~~~Ki~r~~~~A~~~g~P~i~l~dsg-------Gari~~~----v~~l~g~g~--iF~~~a~~Sg  162 (526)
T COG4799          96 FANDFTVKGGTLGEMTAKKILRAQELAIENGLPVIGLNDSG-------GARIQEG----VPSLAGYGR--IFYRNARASG  162 (526)
T ss_pred             EEecCceecccccccccchHHHHHHHHHHcCCCEEEEEccc-------ccccccC----ccccccchH--HHHHHHHhcc
Confidence            33344556888888888888999888887765555555544       4444321    111111111  1111223444


Q ss_pred             CCCcEEEEECchhchhhHHHhhhcCEEEEeCC-cEEec
Q 026342          164 LPKPVIAMVAGYAVGGGHVLHMVCDLTIAADN-AIFGQ  200 (240)
Q Consensus       164 ~~kP~IAav~G~a~GgG~~lal~~D~rias~~-a~f~~  200 (240)
                      . +|.|++|-|.|.|||.-+-..||++|+.++ +++.+
T Consensus       163 ~-IPqIsvv~G~c~gGgaY~pal~D~~imv~~~~~mfl  199 (526)
T COG4799         163 V-IPQISVVMGPCAGGGAYSPALTDFVIMVRDQSYMFL  199 (526)
T ss_pred             C-CCEEEEEEecCcccccccccccceEEEEcCCccEEe
Confidence            4 999999999999999999999999999988 54444

>PRK12551 ATP-dependent Clp protease proteolytic subunit; Reviewed

Probab=94.32  E-value=0.33  Score=40.47  Aligned_cols=89  Identities=12%  Similarity=0.110  Sum_probs=65.1

Q ss_pred             CCHHHHHHHHHHHHHhhhCCCeeEE--EEeeCCCCCcccCCCccccccCCccchhhhhhhhHHHHHHHHHcCCCcEEEEE
Q 026342           95 FRPHTVKELIRAFNDARDDSSVGVI--ILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMV  172 (240)
Q Consensus        95 l~~~~~~~L~~~l~~~~~d~~v~vv--Vltg~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~IAav  172 (240)
                      ++.+...++...|..++.++..+-|  .|-+.       |+|+..                ...++..|...+.||...+
T Consensus        34 i~~~~a~~ii~~Ll~l~~~~~~~~I~l~INSp-------GG~v~~----------------g~aIyd~m~~~~~~V~t~~   90 (196)
T PRK12551         34 VTSDSANRIVAQLLFLEAEDPEKDIYLYINSP-------GGSVYD----------------GLGIFDTMQHVKPDVHTVC   90 (196)
T ss_pred             ecHHHHHHHHHHHHHhhccCCCCCEEEEEeCC-------Ccchhh----------------HHHHHHHHHhcCCCEEEEE
Confidence            8889999999999888754322322  23333       333321                1234667788889999999


Q ss_pred             CchhchhhHHHhhhcCE--EEEeCCcEEeccccccc
Q 026342          173 AGYAVGGGHVLHMVCDL--TIAADNAIFGQTGPKVG  206 (240)
Q Consensus       173 ~G~a~GgG~~lal~~D~--rias~~a~f~~pe~~~G  206 (240)
                      .|.|.+.|.-|++++|.  |++.++++|.+..+..|
T Consensus        91 ~G~AaS~AslIl~aG~~~~R~~~p~a~iMIHqP~~~  126 (196)
T PRK12551         91 VGLAASMGAFLLCAGAKGKRSSLQHSRIMIHQPLGG  126 (196)
T ss_pred             EEEehhHHHHHHhCCCCCceecCCCCEEEEecCCcc
Confidence            99999999999999985  88999999887766543

>PRK14514 ATP-dependent Clp protease proteolytic subunit; Provisional

Probab=93.77  E-value=0.53  Score=40.04  Aligned_cols=88  Identities=14%  Similarity=0.129  Sum_probs=63.3

Q ss_pred             CCHHHHHHHHHHHHHhhh---CCCeeEEEEeeCCCCCcccCCCccccccCCccchhhhhhhhHHHHHHHHHcCCCcEEEE
Q 026342           95 FRPHTVKELIRAFNDARD---DSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAM  171 (240)
Q Consensus        95 l~~~~~~~L~~~l~~~~~---d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~IAa  171 (240)
                      +|..+...+...|..++.   +..+.+. |-+.|       +++..                ...++..|...+.||...
T Consensus        63 Idd~~a~~i~aqLl~L~~~~~~~~I~ly-INSpG-------Gsv~a----------------GlaIyd~m~~~~~~V~tv  118 (221)
T PRK14514         63 IDDYTANTIQAQLLYLDSVDPGKDISIY-INSPG-------GSVYA----------------GLGIYDTMQFISSDVATI  118 (221)
T ss_pred             EcHHHHHHHHHHHHHHhccCCCCCEEEE-EECCC-------cchhh----------------HHHHHHHHHhcCCCEEEE
Confidence            777888888887666654   3334333 34443       33211                123456778889999999


Q ss_pred             ECchhchhhHHHhhhcCE--EEEeCCcEEeccccccc
Q 026342          172 VAGYAVGGGHVLHMVCDL--TIAADNAIFGQTGPKVG  206 (240)
Q Consensus       172 v~G~a~GgG~~lal~~D~--rias~~a~f~~pe~~~G  206 (240)
                      +.|.|.+.|.-|++++|.  |++.+++.|.+..+..|
T Consensus       119 ~~G~AAS~AslIl~aG~~gkR~~~pna~iMiHqP~~~  155 (221)
T PRK14514        119 CTGMAASMASVLLVAGTKGKRSALPHSRVMIHQPLGG  155 (221)
T ss_pred             EEEEehhHHHHHHhcCCCCceeeCCCCEEEeccCCcc
Confidence            999999999999999996  99999999988776544

>PRK14513 ATP-dependent Clp protease proteolytic subunit; Provisional

Probab=93.70  E-value=0.56  Score=39.31  Aligned_cols=89  Identities=18%  Similarity=0.249  Sum_probs=65.5

Q ss_pred             CCCHHHHHHHHHHHHHhhhCC---CeeEEEEeeCCCCCcccCCCccccccCCccchhhhhhhhHHHHHHHHHcCCCcEEE
Q 026342           94 AFRPHTVKELIRAFNDARDDS---SVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIA  170 (240)
Q Consensus        94 al~~~~~~~L~~~l~~~~~d~---~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~IA  170 (240)
                      .++.++...+...|-.++.++   .+.+. |.+.|       +|+..                ...++..|...+-||..
T Consensus        35 ~i~~~~a~~ii~~Ll~L~~~~~~~~I~l~-INSpG-------G~v~~----------------GlaIyd~m~~~~~~V~T   90 (201)
T PRK14513         35 PIESQMANTIVAQLLLLDSQNPEQEIQMY-INCPG-------GEVYA----------------GLAIYDTMRYIKAPVST   90 (201)
T ss_pred             EEcHHHHHHHHHHHHHhhccCCCCCEEEE-EECCC-------Cchhh----------------HHHHHHHHHhcCCCEEE
Confidence            378888888888777776533   34333 34433       33211                12456678888999999


Q ss_pred             EECchhchhhHHHhhhcCE--EEEeCCcEEeccccccc
Q 026342          171 MVAGYAVGGGHVLHMVCDL--TIAADNAIFGQTGPKVG  206 (240)
Q Consensus       171 av~G~a~GgG~~lal~~D~--rias~~a~f~~pe~~~G  206 (240)
                      .+.|.|.+.|.-|++++|-  |++.++++|-+..+..|
T Consensus        91 i~~G~AaS~As~il~aG~kgkR~~~pna~iMIHqp~~~  128 (201)
T PRK14513         91 ICVGIAMSMGSVLLMAGDKGKRMALPNSRIMIHQGSAG  128 (201)
T ss_pred             EEEeeehhhHHHHHhcCCCCcEEecCCeEEEEecCCCC
Confidence            9999999999999999996  99999999988777655

>COG0777 AccD Acetyl-CoA carboxylase beta subunit [Lipid metabolism]

Probab=93.51  E-value=0.98  Score=39.46  Aligned_cols=112  Identities=17%  Similarity=0.275  Sum_probs=77.0

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccchhhhhhhhHHHHHHH
Q 026342           81 IAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQ  160 (240)
Q Consensus        81 v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~  160 (240)
                      ++...++-.=-.-.|..-.=+.+.++++.+-++. +.+|+++..|      |+-.++-    .  ....+-......+.+
T Consensus       124 vv~av~df~FmgGSmGsVvGeki~ra~E~A~e~k-~P~v~f~aSG------GARMQEg----~--lSLMQMaktsaAl~~  190 (294)
T COG0777         124 VVLAVMDFAFMGGSMGSVVGEKITRAIERAIEDK-LPLVLFSASG------GARMQEG----I--LSLMQMAKTSAALKR  190 (294)
T ss_pred             EEEEEEeccccccchhHHHHHHHHHHHHHHHHhC-CCEEEEecCc------chhHhHH----H--HHHHHHHHHHHHHHH
Confidence            4555555443456788888888999999887664 6788888877      3332220    0  000011112233456


Q ss_pred             HHcCCCcEEEEECchhchhh-HHHhhhcCEEEEeCCcEEecccccc
Q 026342          161 IRRLPKPVIAMVAGYAVGGG-HVLHMVCDLTIAADNAIFGQTGPKV  205 (240)
Q Consensus       161 i~~~~kP~IAav~G~a~GgG-~~lal~~D~rias~~a~f~~pe~~~  205 (240)
                      +.+...|.|+.+..+..||= ..+++..|+.||.++|.+||...++
T Consensus       191 l~ea~lpyIsVLt~PTtGGVsASfA~lGDi~iAEP~AlIGFAGpRV  236 (294)
T COG0777         191 LSEAGLPYISVLTDPTTGGVSASFAMLGDIIIAEPGALIGFAGPRV  236 (294)
T ss_pred             HHhcCCceEEEecCCCccchhHhHHhccCeeecCcccccccCcchh
Confidence            77889999999999999884 6699999999999999999976553

>TIGR03134 malonate_gamma malonate decarboxylase, gamma subunit

Probab=93.10  E-value=2.5  Score=36.37  Aligned_cols=108  Identities=19%  Similarity=0.225  Sum_probs=63.5

Q ss_pred             CCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHh-hhCCCeeEEEEeeCCCCCcccCCCccccccCCccchhhhhhhhHHHH
Q 026342           79 EGIAKITINRPDRRNAFRPHTVKELIRAFNDA-RDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDL  157 (240)
Q Consensus        79 ~~v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~-~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l  157 (240)
                      +.-..|.=|+|..  .|+.+-...+.+.+..+ +++.++=+|.|.=..  .|-.|.+-++..          ......++
T Consensus        31 G~~V~vIa~~~~~--~~g~~~~~k~A~~v~~~~d~~f~~PIv~lvDtp--G~~~g~~aE~~G----------~~~a~A~l   96 (238)
T TIGR03134        31 GGKVTVIGVVPDA--EVGLDEALALAQAVLDVIEADDKRPIVVLVDTP--SQAYGRREELLG----------INQALAHL   96 (238)
T ss_pred             CEEEEEEEECCCC--cCChHHHHHHHHHHHHHHHhcCCCCEEEEEeCC--CCCCCHHHHHHH----------HHHHHHHH
Confidence            3334444455542  78878888888888775 455555555554332  233333221110          11123333


Q ss_pred             HHHHH---cCCCcEEEEECchhchhhHH-HhhhcCEEEEeCCcEEec
Q 026342          158 QVQIR---RLPKPVIAMVAGYAVGGGHV-LHMVCDLTIAADNAIFGQ  200 (240)
Q Consensus       158 ~~~i~---~~~kP~IAav~G~a~GgG~~-lal~~D~rias~~a~f~~  200 (240)
                      +..+.   ..+.|+|+.|-|.++|||+. +.+.+|.++|-+++.++.
T Consensus        97 ~~a~a~a~~~~vP~IsvI~g~a~ggg~lamg~~ad~v~Alp~A~i~v  143 (238)
T TIGR03134        97 AKALALARLAGHPVIGLIYGKAISGAFLAHGLQADRIIALPGAMVHV  143 (238)
T ss_pred             HHHHHHhhcCCCCEEEEEeCCccHHHHHHHccCcCeEEEcCCcEEEe
Confidence            44444   55699999999999988765 444588888877776654

Members of this protein family are the gamma subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase, while the gamma subunit appears either to mediate subunit interaction or to act as a co-decarboxylase with the beta subunit. The beta and gamma subunits exhibit some local sequence similarity.

>PF01039 Carboxyl_trans: Carboxyl transferase domain; InterPro: IPR000022 Members in this domain include biotin dependent carboxylases [, ]

Probab=89.62  E-value=2.5  Score=40.21  Aligned_cols=110  Identities=19%  Similarity=0.219  Sum_probs=67.2

Q ss_pred             CCCEEEEEEcCCCC-CCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccchhhhhhhhHHH
Q 026342           78 GEGIAKITINRPDR-RNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLD  156 (240)
Q Consensus        78 ~~~v~~Itlnrp~~-~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~  156 (240)
                      ++.-.-|.=|+|.. .-+++.+-.....+.++.++.. ++=+|.|.-.  ..|-.|-+-+.         ....+ ...+
T Consensus       292 ~G~pVGiian~~~~~~G~~~~~~a~K~arfi~lcd~~-~iPlv~l~dt--pGf~~g~~~E~---------~g~~~-~ga~  358 (493)
T PF01039_consen  292 GGRPVGIIANNPRQRAGALDPDGARKAARFIRLCDAF-NIPLVTLVDT--PGFMPGPEAER---------AGIIR-AGAR  358 (493)
T ss_dssp             TTEEEEEEEE-TTCGGGEB-HHHHHHHHHHHHHHHHT-T--EEEEEEE--CEB--SHHHHH---------TTHHH-HHHH
T ss_pred             CCcceEEEEeccccccccCChHHHHHHHHHHHHHHhh-CCceEEEeec--ccccccchhhh---------cchHH-HHHH
Confidence            34334444566642 2269999999999999999874 4566666543  23544432211         11111 3456


Q ss_pred             HHHHHHcCCCcEEEEECchhchhhHHHhhhc----CEEEEeCCcEEec
Q 026342          157 LQVQIRRLPKPVIAMVAGYAVGGGHVLHMVC----DLTIAADNAIFGQ  200 (240)
Q Consensus       157 l~~~i~~~~kP~IAav~G~a~GgG~~lal~~----D~rias~~a~f~~  200 (240)
                      ++.++.++..|.|..|-|.+.|+|.......    |+++|.++++++.
T Consensus       359 ~~~a~~~~~vP~itvi~~~~~Gga~~am~~~~~~~~~~~Awp~a~~~v  406 (493)
T PF01039_consen  359 LLYALAEATVPKITVIVRKAYGGAYYAMCGRGYGPDFVFAWPTAEIGV  406 (493)
T ss_dssp             HHHHHHHH-S-EEEEEEEEEEHHHHHHTTGGGGTTSEEEEETT-EEES
T ss_pred             HHHHHHcCCCCEEEEEeCCccCcchhhhcccccchhhhhhhhcceeee
Confidence            7889999999999999999999887555555    7888777777764

The carboxyl transferase domain carries out the following reaction; transcarboxylation from biotin to an acceptor molecule. There are two recognised types of carboxyl transferase. One of them uses acyl-CoA and the other uses 2-oxo acid as the acceptor molecule of carbon dioxide. All of the members in this family utilise acyl-CoA as the acceptor molecule.; GO: 0016874 ligase activity; PDB: 2F9Y_B 1XO6_B 1XNV_B 3MFM_C 3IBB_A 1XNW_F 3IAV_B 1XNY_A 3IB9_A 3U9S_F ....

>COG0074 SucD Succinyl-CoA synthetase, alpha subunit [Energy production and conversion]

Probab=86.99  E-value=2  Score=37.80  Aligned_cols=52  Identities=23%  Similarity=0.342  Sum_probs=35.2

Q ss_pred             HHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccchhhhhhhhHHHHHHHHHcCCCcEEEEECchhc
Q 026342          104 IRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAV  177 (240)
Q Consensus       104 ~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~IAav~G~a~  177 (240)
                      .++|+.+++||+.++||+-|.-+      .+-+           +    ...++..+ ....||+||.+-|.+-
T Consensus       189 id~L~~fe~Dp~T~~ivmiGEiG------G~aE-----------e----~AA~~i~~-~~~~KPVVa~iaG~ta  240 (293)
T COG0074         189 IDALEMFEADPETEAIVMIGEIG------GPAE-----------E----EAAEYIKA-NATRKPVVAYIAGRTA  240 (293)
T ss_pred             HHHHHHHhcCccccEEEEEecCC------CcHH-----------H----HHHHHHHH-hccCCCEEEEEeccCC
Confidence            47888999999999999999731      1100           0    11233444 4455999999999865

>PLN02820 3-methylcrotonyl-CoA carboxylase, beta chain

Probab=86.49  E-value=6.6  Score=38.09  Aligned_cols=95  Identities=12%  Similarity=0.153  Sum_probs=64.1

Q ss_pred             CCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccchhhhhhhhHHHHHHHHHcCCCcEEEEE
Q 026342           93 NAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMV  172 (240)
Q Consensus        93 Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~IAav  172 (240)
                      -+++.+-.....+.++.+++- ++=+|.|.=..  .|-.|.+-+.         ....+ ....++.++....+|.|++|
T Consensus       380 g~l~~~~a~Kaarfi~lc~~~-~iPlv~l~D~p--Gf~~G~~~E~---------~G~~~-~~a~l~~A~a~~~VP~isvi  446 (569)
T PLN02820        380 GILFTESALKGAHFIELCAQR-GIPLLFLQNIT--GFMVGSRSEA---------SGIAK-AGAKMVMAVACAKVPKITII  446 (569)
T ss_pred             CccCHHHHHHHHHHHHHHHhc-CCCEEEEEECC--CCCCCHHHHH---------hhHHH-HHHHHHHHHHhCCCCEEEEE
Confidence            458888899988888888754 45556555432  3666654332         11111 34567788899999999999


Q ss_pred             CchhchhhHHHhh----hcCEEEEeCCcEEec
Q 026342          173 AGYAVGGGHVLHM----VCDLTIAADNAIFGQ  200 (240)
Q Consensus       173 ~G~a~GgG~~lal----~~D~rias~~a~f~~  200 (240)
                      -|.++|+|..-++    ..|++++.+++.++.
T Consensus       447 ~g~a~G~g~~aM~g~~~~~d~~~awp~A~i~v  478 (569)
T PLN02820        447 VGGSFGAGNYGMCGRAYSPNFLFMWPNARIGV  478 (569)
T ss_pred             ECCcchHHHHHhcCcCCCCCEEEECCCCeEEe
Confidence            9999998765443    567777776666653

>COG0740 ClpP Protease subunit of ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]

Probab=84.34  E-value=9.5  Score=31.92  Aligned_cols=49  Identities=27%  Similarity=0.269  Sum_probs=42.2

Q ss_pred             HHHHHHHcCCCcEEEEECchhchhhHHHhhhcCEE--EEeCCcEEeccccc
Q 026342          156 DLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLT--IAADNAIFGQTGPK  204 (240)
Q Consensus       156 ~l~~~i~~~~kP~IAav~G~a~GgG~~lal~~D~r--ias~~a~f~~pe~~  204 (240)
                      .++..+...++||...+.|.|...|.-|++++|..  ++.+++++-...+.
T Consensus        76 AIydtm~~ik~~V~ti~~G~AaSmgs~l~~aG~~g~r~~lPnsrimIHqP~  126 (200)
T COG0740          76 AIYDTMQFIKPPVSTICMGQAASMGSVLLMAGDKGKRFALPNARIMIHQPS  126 (200)
T ss_pred             HHHHHHHhcCCCeEEEEecHHHhHHHHHHhcCCCCCceeCCCceEEEecCC
Confidence            35667889999999999999999999999999986  88888888765555

>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3

Probab=81.12  E-value=4.5  Score=35.93  Aligned_cols=76  Identities=24%  Similarity=0.359  Sum_probs=46.8

Q ss_pred             HHHHHHHHHHHHhhhCC---CeeEEEE-eeCCCCCcccCCCccccccCCccchhhhhhhhHHHHHHHHHcCCCcEEEEEC
Q 026342           98 HTVKELIRAFNDARDDS---SVGVIIL-TGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVA  173 (240)
Q Consensus        98 ~~~~~L~~~l~~~~~d~---~v~vvVl-tg~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~IAav~  173 (240)
                      ....++.++++.+....   .+-+||| +|.|.  +   -||..|              +-..+.++|+.++.|||++| 
T Consensus        55 ~A~~~I~~al~~~~~~~~~~~~Dviii~RGGGs--~---eDL~~F--------------N~e~varai~~~~~PvisaI-  114 (319)
T PF02601_consen   55 GAAASIVSALRKANEMGQADDFDVIIIIRGGGS--I---EDLWAF--------------NDEEVARAIAASPIPVISAI-  114 (319)
T ss_pred             chHHHHHHHHHHHHhccccccccEEEEecCCCC--h---HHhccc--------------ChHHHHHHHHhCCCCEEEec-
Confidence            45677788888887654   4555555 55441  1   122222              12356789999999999987 


Q ss_pred             chhchhhHHHh-hhcCEEEEeCC
Q 026342          174 GYAVGGGHVLH-MVCDLTIAADN  195 (240)
Q Consensus       174 G~a~GgG~~la-l~~D~rias~~  195 (240)
                      ||-.=  +.|+ +.||+|..|+.
T Consensus       115 GHe~D--~ti~D~vAd~ra~TPt  135 (319)
T PF02601_consen  115 GHETD--FTIADFVADLRAPTPT  135 (319)
T ss_pred             CCCCC--chHHHHHHHhhCCCHH
Confidence            33322  2333 77888887766

1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity

>PRK12552 ATP-dependent Clp protease-like protein; Reviewed

Probab=80.61  E-value=21  Score=30.39  Aligned_cols=98  Identities=14%  Similarity=0.207  Sum_probs=64.2

Q ss_pred             CCCHHHHHHHHHHHHHhhhCC---CeeEEEEeeCCCCCcccCCCccccccCCccchhhhhhhhHHHHHHHHHcCCCcEEE
Q 026342           94 AFRPHTVKELIRAFNDARDDS---SVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIA  170 (240)
Q Consensus        94 al~~~~~~~L~~~l~~~~~d~---~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~IA  170 (240)
                      ..+.++.+.+...|-.++.++   .+. +-|-+.|+..| +|-=+...    .         ....++..+...+-+|..
T Consensus        48 ~~~~~~a~~iiaqLl~L~~~~~~k~I~-lyINSpGGsv~-~G~~iG~v----~---------~glaIyD~m~~ik~~V~T  112 (222)
T PRK12552         48 QVGMDVTELIIAQLLYLEFDDPEKPIY-FYINSTGTSWY-TGDAIGFE----T---------EAFAICDTMRYIKPPVHT  112 (222)
T ss_pred             chhHhHHHHHHHHHHHHhccCCCCCEE-EEEeCCCCCcc-cccccccc----c---------cHHHHHHHHHhcCCCeEE
Confidence            344557777777776665433   343 44455553223 33000000    0         122456677788889999


Q ss_pred             EECchhchhhHHHhhhcCE--EEEeCCcEEeccccccc
Q 026342          171 MVAGYAVGGGHVLHMVCDL--TIAADNAIFGQTGPKVG  206 (240)
Q Consensus       171 av~G~a~GgG~~lal~~D~--rias~~a~f~~pe~~~G  206 (240)
                      .+.|.|.+.+.-|++++|-  |++.++++|-+..+..|
T Consensus       113 v~~G~AaS~AslIl~aG~kg~R~alpns~iMIHqP~~~  150 (222)
T PRK12552        113 ICIGQAMGTAAMILSAGTKGQRASLPHATIVLHQPRSG  150 (222)
T ss_pred             EEEeehhhHHHHHHhCCCCCceecCCCcEEEeccCCcc
Confidence            9999999999999999996  99999999988776655

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	240
2iex_A	272	Crystal Structure Of Dihydroxynapthoic Acid Synthet		1e-57
3t88_A	289	Crystal Structure Of Escherichia Coli Menb In Compl		3e-56
4els_A	285	Structure Of E. Coli. 1,4-Dihydroxy-2- Naphthoyl Co		3e-56
2uzf_A	273	Crystal Structure Of Staphylococcus Aureus 1,4-Dihy		4e-54
4eml_A	275	Synechocystis Sp. Pcc 6803 1,4-Dihydroxy-2-Naphthoy		1e-53
3h02_A	288	2.15 Angstrom Resolution Crystal Structure Of Napht		2e-53
1rjm_A	339	Crystal Structure Of Menb (rv0548c) From Mycobacter		3e-38
1q51_A	314	Crystal Structure Of Mycobacterium Tuberculosis Men		3e-38
3t8a_A	334	Crystal Structure Of Mycobacterium Tuberculosis Men		4e-38
1dub_A	261	2-Enoyl-Coa Hydratase, Data Collected At 100 K, Ph		1e-16
1ey3_A	258	Structure Of Enoyl-Coa Hydratase Complexed With The		4e-16
3h81_A	278	Crystal Structure Of Enoyl-Coa Hydratase From Mycob		4e-16
3q0j_A	258	Crystal Structure Of The Mycobacterium Tuberculosis		4e-16
1mj3_A	260	Crystal Structure Analysis Of Rat Enoyl-Coa Hydrata		4e-16
3pzk_A	257	Crystal Structure Of The Mycobacterium Tuberculosis		4e-16
2vsu_F	276	A Ternary Complex Of Hydroxycinnamoyl-Coa Hydratase		1e-15
2vss_F	276	Wild-Type Hydroxycinnamoyl-Coa Hydratase Lyase In C		2e-15
3moy_A	263	Crystal Structure Of Probable Enoyl-Coa Hydratase F		2e-15
2vsu_C	275	A Ternary Complex Of Hydroxycinnamoyl-Coa Hydratase		3e-15
2vsu_A	276	A Ternary Complex Of Hydroxycinnamoyl-Coa Hydratase		3e-15
2vsu_E	276	A Ternary Complex Of Hydroxycinnamoyl-Coa Hydratase		3e-15
2hw5_A	286	The Crystal Structure Of Human Enoyl-Coenzyme A (Co		4e-15
2j5i_A	276	Crystal Structure Of Hydroxycinnamoyl-Coa Hydratase		4e-15
2j5i_B	276	Crystal Structure Of Hydroxycinnamoyl-Coa Hydratase		4e-15
2j5i_I	276	Crystal Structure Of Hydroxycinnamoyl-Coa Hydratase		4e-15
3myb_A	286	Crystal Structure Of Enoyl-Coa Hydratase Mycobacter		4e-15
2vss_E	276	Wild-Type Hydroxycinnamoyl-Coa Hydratase Lyase In C		5e-15
1uiy_A	253	Crystal Structure Of Enoyl-Coa Hydratase From Therm		9e-15
3p5m_A	255	Crystal Structure Of An Enoyl-Coa HydrataseISOMERAS		3e-14
3he2_A	264	Crystal Structure Of Enoyl-Coa Hydratase From Mycob		3e-14
3kqf_A	265	1.8 Angstrom Resolution Crystal Structure Of Enoyl-		2e-13
3tlf_A	274	Crystal Structure Of An Enoyl-Coa HydrataseISOMERAS		3e-13
3t3w_A	279	Crystal Structure Of Probable Enoyl-Coa Hydratase F		4e-13
1jxz_A	269	Structure Of The H90q Mutant Of 4-Chlorobenzoyl-Coe		5e-13
3ome_A	282	Crystal Structure Of A Probable Enoyl-Coa Hydratase		9e-13
3qka_A	261	Crystal Structure Of Enoyl-Coa Hydratase Echa5 From		1e-12
1nzy_A	269	4-Chlorobenzoyl Coenzyme A Dehalogenase From Pseudo		2e-12
1nzy_B	269	4-Chlorobenzoyl Coenzyme A Dehalogenase From Pseudo		2e-12
3p85_A	270	Crystal Structure Enoyl-Coa Hydratase From Mycobact		3e-12
3qyr_A	253	Crystal Structure Of Enoyl-Coa Hydratase Echa16_2 M		3e-12
3r0o_A	273	Crystal Structure Of Carnitinyl-Coa Hydratase From		4e-12
4f47_A	278	The Structure Of Enoyl-Coa Hydratase Echa19 From My		4e-12
2pbp_A	258	Crystal Structure Of Enoyl-Coa Hydrates Subunit I (		8e-12
4fzw_A	258	Crystal Structure Of The Paaf-paag Hydratase-isomer		2e-11
3r9t_A	267	Structure Of Echa1_1 From Mycobacterium Paratubercu		2e-11
3sll_A	290	Crystal Structure Of A Probable Enoyl-Coa Hydratase		2e-11
3r9s_A	267	Structure Of A Carnitinyl-Coa Dehydratase From Myco		3e-11
2vx2_A	287	Crystal Structure Of Human Enoyl Coenzyme A Hydrata		2e-10
4di1_A	277	Crystal Structure Of Enoyl-Coa Hydratase Echa17 Fro		3e-10
3i47_A	268	Crystal Structure Of Putative Enoyl Coa HydrataseIS		8e-10
3pe8_A	256	Crystal Structure Of Enoyl-Coa Hydratase From Mycob		9e-10
3trr_A	256	Crystal Structure Of A Probable Enoyl-Coa Hydratase		1e-09
3rsi_A	265	The Structure Of A Putative Enoyl-Coa HydrataseISOM		1e-09
3qxi_A	265	Crystal Structure Of Enoyl-Coa Hydratase Echa1 From		3e-09
2f6q_A	280	The Crystal Structure Of Human Peroxisomal Delta3,		4e-09
3qre_A	298	Crystal Structure Of An Enoyl-Coa Hydratase Echa12_		5e-09
3qxz_A	265	Crystal Structure Of A Probable Enoyl-Coa Hydratase		8e-09
2vre_A	296	Crystal Structure Of Human Peroxisomal Delta3,5, De		1e-08
3oc7_A	267	Crystal Structure Of An Enoyl-Coa Hydratase From My		3e-08
3hrx_A	254	Crystal Structure Of Phenylacetic Acid Degradation		3e-08
3qmj_A	256	Crystal Structure Of Enoyl-Coa Hydratase Echa8_6 Fr		7e-08
2ej5_A	257	Crystal Structure Of Gk2038 Protein (Enoyl-Coa Hydr		1e-07
4fzw_C	274	Crystal Structure Of The Paaf-paag Hydratase-isomer		1e-07
1dci_A	275	Dienoyl-Coa Isomerase Length = 275		1e-07
3r9q_A	262	Structure Of A Probable Enoyl-Coa HydrataseISOMERAS		2e-07
3bpt_A	363	Crystal Structure Of Human Beta-Hydroxyisobutyryl-C		2e-07
3lke_A	263	Crystal Structure Of Enoyl-Coa Hydratase From Bacil		4e-07
3swx_A	265	Crystal Structure Of A Probable Enoyl-Coa Hydratase		5e-07
2q35_A	243	Crystal Structure Of The Y82f Variant Of Ech2 Decar		8e-07
2fbm_A	291	Acetyltransferase Domain Of Cdy1 Length = 291		9e-07
3fdu_A	266	Crystal Structure Of A Putative Enoyl-Coa Hydratase		1e-06
2a7k_A	250	Carboxymethylproline Synthase (carb) From Pectobact		1e-06
4j2u_A	365	Crystal Structure Of An Enoyl-coa Hydratase From Rh		2e-06
2fw2_A	260	Catalytic Domain Of Cdy Length = 260		2e-06
1ef8_A	261	Crystal Structure Of Methylmalonyl Coa Decarboxylas		3e-06
3qk8_A	272	Crystal Structure Of Enoyl-Coa Hydratase Echa15 Fro		4e-06
2q2x_A	243	Crystal Structure Of The Ech2 Decarboxylase Domain		4e-06
3l3s_A	263	Crystal Structure Of An Enoyl-Coa HydrotaseISOMERAS		5e-06
3njb_A	333	Crystal Structure Of Enoyl-Coa Hydratase From Mycob		7e-06
3rrv_A	276	Crystal Structure Of An Enoyl-Coa HydrataseISOMERAS		2e-05
1hzd_A	272	Crystal Structure Of Human Auh Protein, An Rna-Bind		2e-05
1wdk_A	715	Fatty Acid Beta-Oxidation Multienzyme Complex From		4e-05
2ppy_A	265	Crystal Structure Of Enoyl-Coa Hydrates (Gk_1992) F		4e-05
4hdt_A	353	Crystal Structure Of A Carnitinyl-Coa Dehydratase F		7e-05
2pg8_A	417	Crystal Structure Of R254k Mutanat Of Dpgc With Bou		8e-05
2np9_A	440	Crystal Structure Of A Dioxygenase In The Crotonase		1e-04
3hin_A	275	Crystal Structure Of Putative Enoyl-Coa Hydratase F		5e-04

>pdb|2IEX|A Chain A, Crystal Structure Of Dihydroxynapthoic Acid Synthetase (Gk2873) From Geobacillus Kaustophilus Hta426 Length = 272

Iteration: 1
 Score =  219 bits (557), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 110/166 (66%), Positives = 127/166 (76%), Gaps = 2/166 (1%)
Query: 67  EFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGT 126
           ++ DIIYE     GIAKITINRP+  NAFRP TV E+I AF  ARDDS++GVIILTG G 
Sbjct: 10  DYEDIIYETY--NGIAKITINRPEVHNAFRPKTVNEMIDAFTKARDDSNIGVIILTGAGG 67
Query: 127 EAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMV 186
           +AFCSGGDQ +R   GY   +   RLNVLDLQ  IR +PKPVIAMVAGYA+GGGHVLH+V
Sbjct: 68  KAFCSGGDQKVRGHGGYVGEDEIPRLNVLDLQRLIRVIPKPVIAMVAGYAIGGGHVLHVV 127
Query: 187 CDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVSTVQQCLWWGL 232
           CDLTIAADNAIFGQTGPKVGSFD GYG+  ++R+V   +    W L
Sbjct: 128 CDLTIAADNAIFGQTGPKVGSFDGGYGAGYLARIVGHKKAREIWYL 173

>pdb|3T88|A Chain A, Crystal Structure Of Escherichia Coli Menb In Complex With Substrate Analogue, Osb-Ncoa Length = 289

Iteration: 1
 Score =  214 bits (546), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 110/166 (66%), Positives = 127/166 (76%), Gaps = 2/166 (1%)
Query: 68  FTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTE 127
           F DI YEK+  +GIAKITINRP  RNAFRP TVKE+I+A  DAR D ++GVIILTG G +
Sbjct: 26  FEDIRYEKST-DGIAKITINRPQVRNAFRPLTVKEMIQALADARYDDNIGVIILTGAGDK 84
Query: 128 AFCSGGDQALR-TRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMV 186
           AFCSGGDQ +R    GY D      LNVLD Q QIR  PKPV+AMVAGY++GGGHVLHM+
Sbjct: 85  AFCSGGDQKVRGDYGGYKDDSGVHHLNVLDFQRQIRTCPKPVVAMVAGYSIGGGHVLHMM 144
Query: 187 CDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVSTVQQCLWWGL 232
           CDLTIAADNAIFGQTGPKVGSFD G+G+S M+R+V   +    W L
Sbjct: 145 CDLTIAADNAIFGQTGPKVGSFDGGWGASYMARIVGQKKAREIWFL 190

>pdb|4ELS|A Chain A, Structure Of E. Coli. 1,4-Dihydroxy-2- Naphthoyl Coenzyme A Synthases (Menb) In Complex With Bicarbonate Length = 285

Iteration: 1
 Score =  214 bits (546), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 115/191 (60%), Positives = 135/191 (70%), Gaps = 11/191 (5%)
Query: 46  IHGEVPSHDVVWRIACDESGTEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIR 105
           ++  V  HD      C E    F DI YEK+  +GIAKITINRP  RNAFRP TVKE+I+
Sbjct: 9   LYAPVEWHD------CSEG---FEDIRYEKST-DGIAKITINRPQVRNAFRPLTVKEMIQ 58
Query: 106 AFNDARDDSSVGVIILTGKGTEAFCSGGDQALR-TRDGYADYENFGRLNVLDLQVQIRRL 164
           A  DAR D ++GVIILTG G +AFCSGGDQ +R    GY D      LNVLD Q QIR  
Sbjct: 59  ALADARYDDNIGVIILTGAGDKAFCSGGDQKVRGDYGGYKDDSGVHHLNVLDFQRQIRTC 118
Query: 165 PKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVSTV 224
           PKPV+AMVAGY++GGGHVLHM+CDLTIAADNAIFGQTGPKVGSFD G+G+S M+R+V   
Sbjct: 119 PKPVVAMVAGYSIGGGHVLHMMCDLTIAADNAIFGQTGPKVGSFDGGWGASYMARIVGQK 178
Query: 225 QQCLWWGLKKH 235
           +    W L + 
Sbjct: 179 KAREIWFLCRQ 189

>pdb|2UZF|A Chain A, Crystal Structure Of Staphylococcus Aureus 1,4-Dihydroxy-2- Naphthoyl Coa Synthase (Menb) In Complex With Acetoacetyl Coa Length = 273

Iteration: 1
 Score =  207 bits (527), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 108/170 (63%), Positives = 127/170 (74%), Gaps = 2/170 (1%)
Query: 63  ESGTEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILT 122
           E+  E+ +I YE    EGIAK+TINRP+ RNAF P TV E+I AF+ ARDD +V VI+LT
Sbjct: 7   ETLREYDEIKYE--FYEGIAKVTINRPEVRNAFTPKTVAEMIDAFSRARDDQNVSVIVLT 64
Query: 123 GKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHV 182
           G+G  AFCSGGDQ  R   GY   +   RLNVLDLQ  IR +PKPVIAMV GYAVGGG+V
Sbjct: 65  GEGDLAFCSGGDQKKRGHGGYVGEDQIPRLNVLDLQRLIRIIPKPVIAMVKGYAVGGGNV 124
Query: 183 LHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVSTVQQCLWWGL 232
           L++VCDLTIAADNAIFGQTGPKVGSFDAGYGS  ++R+V   +    W L
Sbjct: 125 LNVVCDLTIAADNAIFGQTGPKVGSFDAGYGSGYLARIVGHKKAREIWYL 174

>pdb|4EML|A Chain A, Synechocystis Sp. Pcc 6803 1,4-Dihydroxy-2-Naphthoyl-Coenzyme A Synthase (Menb) In Complex With Bicarbonate Length = 275

Iteration: 1
 Score =  206 bits (523), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 109/181 (60%), Positives = 130/181 (71%), Gaps = 12/181 (6%)
Query: 57  WRIACDESGTEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSV 116
           W IA       + DI+Y KA   GIAKI INRP +RNAFRP TV EL  AF +AR+D+ +
Sbjct: 3   WHIA-----KHYDDILYYKA--GGIAKIVINRPHKRNAFRPQTVFELYDAFCNAREDNRI 55
Query: 117 GVIILTGKGTE-----AFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAM 171
           GV++LTG G       AFCSGGDQ++R   GY D +   RLNVLDLQ  IR +PK VIA+
Sbjct: 56  GVVLLTGAGPHSDGKYAFCSGGDQSVRGEGGYIDDQGTPRLNVLDLQRLIRSMPKVVIAL 115
Query: 172 VAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVSTVQQCLWWG 231
           VAGYA+GGGHVLH+VCDLTIAADNAIFGQTGPKVGSFD G+GSS ++R+V   +    W 
Sbjct: 116 VAGYAIGGGHVLHLVCDLTIAADNAIFGQTGPKVGSFDGGFGSSYLARIVGQKKAREIWY 175
Query: 232 L 232
           L
Sbjct: 176 L 176

>pdb|3H02|A Chain A, 2.15 Angstrom Resolution Crystal Structure Of Naphthoate Synthase From Salmonella Typhimurium. Length = 288

Iteration: 1
 Score =  205 bits (521), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 113/202 (55%), Positives = 136/202 (67%), Gaps = 11/202 (5%)
Query: 35  NNASMNDSYHRIHGEVPSHDVVWRIACDESGTEFTDIIYEKAVGEGIAKITINRPDRRNA 94
           +NA +      ++  V  HD      C E    +TDI YEK+  +GIAKITINRP  RNA
Sbjct: 1   SNAXIYPDETXLYAPVEWHD------CSEG---YTDIRYEKST-DGIAKITINRPQVRNA 50
Query: 95  FRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALR-TRDGYADYENFGRLN 153
           FRP TVKE I+A  DAR D +VGVIILTG+G +AFC+GGDQ +R    GY D      LN
Sbjct: 51  FRPLTVKEXIQALADARYDDNVGVIILTGEGDKAFCAGGDQKVRGDYGGYQDDSGVHHLN 110
Query: 154 VLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYG 213
           VLD Q QIR  PKPV+A VAGY++GGGHVLH  CDLTIAA+NAIFGQTGPKVGSFD G+G
Sbjct: 111 VLDFQRQIRTCPKPVVAXVAGYSIGGGHVLHXXCDLTIAAENAIFGQTGPKVGSFDGGWG 170
Query: 214 SSIMSRLVSTVQQCLWWGLKKH 235
           +S  +R+V   +    W L + 
Sbjct: 171 ASYXARIVGQKKAREIWFLCRQ 192

>pdb|1RJM|A Chain A, Crystal Structure Of Menb (rv0548c) From Mycobacterium Tuberculosis Length = 339

Iteration: 1
 Score =  155 bits (391), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 86/188 (45%), Positives = 112/188 (59%), Gaps = 19/188 (10%)
Query: 51  PSHDVVWRIACDESGTEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDA 110
           P     WR+   +   + TDI Y + V +   ++  NRP+ RNAFRPHTV EL R  + A
Sbjct: 44  PFDAKAWRLV--DGFDDLTDITYHRHVDDATVRVAFNRPEVRNAFRPHTVDELYRVLDHA 101
Query: 111 RDDSSVGVIILTGKGTE------AFCSGGDQALRTRDGY----------ADYENFGRLNV 154
           R    VGV++LTG G        AFCSGGDQ +R R GY           D    GRL++
Sbjct: 102 RMSPDVGVVLLTGNGPSPKDGGWAFCSGGDQRIRGRSGYQYASGDTADTVDVARAGRLHI 161
Query: 155 LDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAA-DNAIFGQTGPKVGSFDAGYG 213
           L++Q  IR +PK VI +V G+A GGGH LH+VCDLT+A+ + A F QT   VGSFD GYG
Sbjct: 162 LEVQRLIRFMPKVVICLVNGWAAGGGHSLHVVCDLTLASREYARFKQTDADVGSFDGGYG 221
Query: 214 SSIMSRLV 221
           S+ ++R V
Sbjct: 222 SAYLARQV 229

>pdb|1Q51|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Menb In Complex With Acetoacetyl-Coenzyme A, A Key Enzyme In Vitamin K2 Biosynthesis Length = 314

Iteration: 1
 Score =  154 bits (390), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 86/188 (45%), Positives = 112/188 (59%), Gaps = 19/188 (10%)
Query: 51  PSHDVVWRIACDESGTEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDA 110
           P     WR+   +   + TDI Y + V +   ++  NRP+ RNAFRPHTV EL R  + A
Sbjct: 19  PFDAKAWRLV--DGFDDLTDITYHRHVDDATVRVAFNRPEVRNAFRPHTVDELYRVLDHA 76
Query: 111 RDDSSVGVIILTGKGTE------AFCSGGDQALRTRDGY----------ADYENFGRLNV 154
           R    VGV++LTG G        AFCSGGDQ +R R GY           D    GRL++
Sbjct: 77  RMSPDVGVVLLTGNGPSPKDGGWAFCSGGDQRIRGRSGYQYASGDTADTVDVARAGRLHI 136
Query: 155 LDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAA-DNAIFGQTGPKVGSFDAGYG 213
           L++Q  IR +PK VI +V G+A GGGH LH+VCDLT+A+ + A F QT   VGSFD GYG
Sbjct: 137 LEVQRLIRFMPKVVICLVNGWAAGGGHSLHVVCDLTLASREYARFKQTDADVGSFDGGYG 196
Query: 214 SSIMSRLV 221
           S+ ++R V
Sbjct: 197 SAYLARQV 204

>pdb|3T8A|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Menb In Complex With Substrate Analogue, Osb-Ncoa Length = 334

Iteration: 1
 Score =  154 bits (390), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 86/188 (45%), Positives = 112/188 (59%), Gaps = 19/188 (10%)
Query: 51  PSHDVVWRIACDESGTEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDA 110
           P     WR+   +   + TDI Y + V +   ++  NRP+ RNAFRPHTV EL R  + A
Sbjct: 39  PFDAKAWRLV--DGFDDLTDITYHRHVDDATVRVAFNRPEVRNAFRPHTVDELYRVLDHA 96
Query: 111 RDDSSVGVIILTGKGTE------AFCSGGDQALRTRDGY----------ADYENFGRLNV 154
           R    VGV++LTG G        AFCSGGDQ +R R GY           D    GRL++
Sbjct: 97  RMSPDVGVVLLTGNGPSPKDGGWAFCSGGDQRIRGRSGYQYASGDTADTVDVARAGRLHI 156
Query: 155 LDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAA-DNAIFGQTGPKVGSFDAGYG 213
           L++Q  IR +PK VI +V G+A GGGH LH+VCDLT+A+ + A F QT   VGSFD GYG
Sbjct: 157 LEVQRLIRFMPKVVICLVNGWAAGGGHSLHVVCDLTLASREYARFKQTDADVGSFDGGYG 216
Query: 214 SSIMSRLV 221
           S+ ++R V
Sbjct: 217 SAYLARQV 224

>pdb|1DUB|A Chain A, 2-Enoyl-Coa Hydratase, Data Collected At 100 K, Ph 6.5 Length = 261

Iteration: 1
 Score = 82.8 bits (203), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 57/158 (36%), Positives = 80/158 (50%), Gaps = 5/158 (3%)
Query: 65  GTEFTDIIYEK-AVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTG 123
           G  F  II EK      +  I +NRP   NA     ++EL +A     +D +VG I+LTG
Sbjct: 1   GANFQYIITEKKGKNSSVGLIQLNRPKALNALCNGLIEELNQALETFEEDPAVGAIVLTG 60
Query: 124 KGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVL 183
            G +AF +G D        + D  +   L+  D    I R+ KPVIA V GYA+GGG  L
Sbjct: 61  -GEKAFAAGADIKEMQNRTFQDCYSGKFLSHWD---HITRIKKPVIAAVNGYALGGGCEL 116
Query: 184 HMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLV 221
            M+CD+  A + A FGQ    +G+     G+  ++R V
Sbjct: 117 AMMCDIIYAGEKAQFGQPEILLGTIPGAGGTQRLTRAV 154

>pdb|1EY3|A Chain A, Structure Of Enoyl-Coa Hydratase Complexed With The Substrate Dac-Coa Length = 258

Iteration: 1
 Score = 81.6 bits (200), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 56/155 (36%), Positives = 79/155 (50%), Gaps = 5/155 (3%)
Query: 68  FTDIIYEK-AVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGT 126
           F  II EK      +  I +NRP   NA     ++EL +A     +D +VG I+LTG G 
Sbjct: 1   FQYIITEKKGKNSSVGLIQLNRPKALNALCNGLIEELNQALETFEEDPAVGAIVLTG-GE 59
Query: 127 EAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMV 186
           +AF +G D        + D  +   L+  D    I R+ KPVIA V GYA+GGG  L M+
Sbjct: 60  KAFAAGADIKEMQNRTFQDCYSGKFLSHWD---HITRIKKPVIAAVNGYALGGGCELAMM 116
Query: 187 CDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLV 221
           CD+  A + A FGQ    +G+     G+  ++R V
Sbjct: 117 CDIIYAGEKAQFGQPEILLGTIPGAGGTQRLTRAV 151

>pdb|3H81|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase From Mycobacterium Tuberculosis Length = 278

Iteration: 1
 Score = 81.3 bits (199), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 56/160 (35%), Positives = 79/160 (49%), Gaps = 18/160 (11%)
Query: 68  FTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTE 127
           +  I+ E+    GI  IT+NRP   NA     + E+  A  +  DD  +G II+TG   +
Sbjct: 24  YETILVERDQRVGI--ITLNRPQALNALNSQVMNEVTSAATELDDDPDIGAIIITGSA-K 80
Query: 128 AFCSGGDQALRTRDGYAD------YENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGH 181
           AF +G D        +AD      +  +G+L  +           P IA VAGYA+GGG 
Sbjct: 81  AFAAGADIKEMADLTFADAFTADFFATWGKLAAVR---------TPTIAAVAGYALGGGC 131
Query: 182 VLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLV 221
            L M+CD+ IAAD A FGQ   K+G      GS  ++R +
Sbjct: 132 ELAMMCDVLIAADTAKFGQPEIKLGVLPGMGGSQRLTRAI 171

>pdb|3Q0J|A Chain A, Crystal Structure Of The Mycobacterium Tuberculosis Crotonase In Complex With The Inhibitor Acetoacetylcoa Length = 258

Iteration: 1
 Score = 81.3 bits (199), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 56/160 (35%), Positives = 79/160 (49%), Gaps = 18/160 (11%)
Query: 68  FTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTE 127
           +  I+ E+    GI  IT+NRP   NA     + E+  A  +  DD  +G II+TG   +
Sbjct: 4   YETILVERDQRVGI--ITLNRPQALNALNSQVMNEVTSAATELDDDPDIGAIIITGSA-K 60
Query: 128 AFCSGGDQALRTRDGYAD------YENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGH 181
           AF +G D        +AD      +  +G+L  +           P IA VAGYA+GGG 
Sbjct: 61  AFAAGADIKEMADLTFADAFTADFFATWGKLAAVR---------TPTIAAVAGYALGGGC 111
Query: 182 VLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLV 221
            L M+CD+ IAAD A FGQ   K+G      GS  ++R +
Sbjct: 112 ELAMMCDVLIAADTAKFGQPEIKLGVLPGMGGSQRLTRAI 151

>pdb|1MJ3|A Chain A, Crystal Structure Analysis Of Rat Enoyl-Coa Hydratase In Complex With Hexadienoyl-Coa Length = 260

Iteration: 1
 Score = 81.3 bits (199), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 56/155 (36%), Positives = 79/155 (50%), Gaps = 5/155 (3%)
Query: 68  FTDIIYEK-AVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGT 126
           F  II EK      +  I +NRP   NA     ++EL +A     +D +VG I+LTG G 
Sbjct: 3   FQYIITEKKGKNSSVGLIQLNRPKALNALCNGLIEELNQALETFEEDPAVGAIVLTG-GE 61
Query: 127 EAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMV 186
           +AF +G D        + D  +   L+  D    I R+ KPVIA V GYA+GGG  L M+
Sbjct: 62  KAFAAGADIKEMQNRTFQDCYSGKFLSHWD---HITRIKKPVIAAVNGYALGGGCELAMM 118
Query: 187 CDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLV 221
           CD+  A + A FGQ    +G+     G+  ++R V
Sbjct: 119 CDIIYAGEKAQFGQPEILLGTIPGAGGTQRLTRAV 153

>pdb|3PZK|A Chain A, Crystal Structure Of The Mycobacterium Tuberculosis Crotonase In Apo Form Length = 257

Iteration: 1
 Score = 81.3 bits (199), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 56/160 (35%), Positives = 79/160 (49%), Gaps = 18/160 (11%)
Query: 68  FTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTE 127
           +  I+ E+    GI  IT+NRP   NA     + E+  A  +  DD  +G II+TG   +
Sbjct: 3   YETILVERDQRVGI--ITLNRPQALNALNSQVMNEVTSAATELDDDPDIGAIIITGSA-K 59
Query: 128 AFCSGGDQALRTRDGYAD------YENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGH 181
           AF +G D        +AD      +  +G+L  +           P IA VAGYA+GGG 
Sbjct: 60  AFAAGADIKEMADLTFADAFTADFFATWGKLAAVR---------TPTIAAVAGYALGGGC 110
Query: 182 VLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLV 221
            L M+CD+ IAAD A FGQ   K+G      GS  ++R +
Sbjct: 111 ELAMMCDVLIAADTAKFGQPEIKLGVLPGMGGSQRLTRAI 150

>pdb|2VSU|F Chain F, A Ternary Complex Of Hydroxycinnamoyl-Coa Hydratase-Lyase ( Hchl) With Acetyl-Coenzyme A And Vanillin Gives Insights Into Substrate Specificity And Mechanism Length = 276

Iteration: 1
 Score = 80.1 bits (196), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 49/127 (38%), Positives = 67/127 (52%), Gaps = 5/127 (3%)
Query: 77  VGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQA 136
           + +GIA + +NRP+RRNA  P   +E+I        D + GV++LTG G EA+ +G D  
Sbjct: 15  IEDGIAFVILNRPERRNAMSPTLNREMIDVLETLEQDPAAGVLVLTGAG-EAWTAGMDLK 73
Query: 137 LRTRDGYADYENFG---RLNVLDLQVQIRRL-PKPVIAMVAGYAVGGGHVLHMVCDLTIA 192
              R+  A  E      R      Q ++ R+  KP IAMV G+  GGG    + CDL I 
Sbjct: 74  EYFREVDAGPEILQEKIRREASQWQWKLLRMYAKPTIAMVNGWCFGGGFAPLVACDLAIC 133
Query: 193 ADNAIFG 199
           AD A FG
Sbjct: 134 ADEATFG 140

>pdb|2VSS|F Chain F, Wild-Type Hydroxycinnamoyl-Coa Hydratase Lyase In Complex With Acetyl-Coa And Vanillin Length = 276

Iteration: 1
 Score = 79.3 bits (194), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 49/127 (38%), Positives = 67/127 (52%), Gaps = 5/127 (3%)
Query: 77  VGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQA 136
           + +GIA + +NRP+RRNA  P   +E+I        D + GV++LTG G EA+ +G D  
Sbjct: 15  IEDGIAFVILNRPERRNAMSPTLNREMIDVLETLEQDPAAGVLVLTGAG-EAWTAGMDLK 73
Query: 137 LRTRDGYADYENFG---RLNVLDLQVQIRRL-PKPVIAMVAGYAVGGGHVLHMVCDLTIA 192
              R+  A  E      R      Q ++ R+  KP IAMV G+  GGG    + CDL I 
Sbjct: 74  EYFREVDAGPEILQEKIRREASQWQWKLLRMYAKPTIAMVNGWCFGGGFSPLVACDLAIC 133
Query: 193 ADNAIFG 199
           AD A FG
Sbjct: 134 ADEATFG 140

>pdb|3MOY|A Chain A, Crystal Structure Of Probable Enoyl-Coa Hydratase From Mycob Smegmatis Length = 263

Iteration: 1
 Score = 79.0 bits (193), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 57/158 (36%), Positives = 78/158 (49%), Gaps = 5/158 (3%)
Query: 64  SGTEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTG 123
           S T +T I   + V  G+  I ++RPD  NA       E++ A  D   D  +G I++TG
Sbjct: 4   SMTTYTTIATSRPVA-GVGLIRLDRPDALNALNQTLEAEVLDAARDFDADLEIGAIVVTG 62
Query: 124 KGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVL 183
               AF +G D A               L+  D   Q+R   KP++A VAGYA+GGG  L
Sbjct: 63  S-ERAFAAGADIAEMVTLTPHQARERNLLSGWDSLTQVR---KPIVAAVAGYALGGGCEL 118
Query: 184 HMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLV 221
            M+CDL IAAD A FGQ    +G      G+  ++R V
Sbjct: 119 AMLCDLVIAADTARFGQPEITLGILPGLGGTQRLTRAV 156

>pdb|2VSU|C Chain C, A Ternary Complex Of Hydroxycinnamoyl-Coa Hydratase-Lyase ( Hchl) With Acetyl-Coenzyme A And Vanillin Gives Insights Into Substrate Specificity And Mechanism Length = 275

Iteration: 1
 Score = 78.6 bits (192), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 48/127 (37%), Positives = 67/127 (52%), Gaps = 5/127 (3%)
Query: 77  VGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQA 136
           + +GIA + +NRP++RNA  P   +E+I        D + GV++LTG G EA+ +G D  
Sbjct: 15  IEDGIAFVILNRPEKRNAMSPTLNREMIDVLETLEQDPAAGVLVLTGAG-EAWTAGMDLK 73
Query: 137 LRTRDGYADYENFG---RLNVLDLQVQIRRL-PKPVIAMVAGYAVGGGHVLHMVCDLTIA 192
              R+  A  E      R      Q ++ R+  KP IAMV G+  GGG    + CDL I 
Sbjct: 74  EYFREVDAGPEILQEKIRREASQWQWKLLRMYAKPTIAMVNGWCFGGGFAPLVACDLAIC 133
Query: 193 ADNAIFG 199
           AD A FG
Sbjct: 134 ADEATFG 140

>pdb|2VSU|A Chain A, A Ternary Complex Of Hydroxycinnamoyl-Coa Hydratase-Lyase ( Hchl) With Acetyl-Coenzyme A And Vanillin Gives Insights Into Substrate Specificity And Mechanism. Length = 276

Iteration: 1
 Score = 78.6 bits (192), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 48/127 (37%), Positives = 67/127 (52%), Gaps = 5/127 (3%)
Query: 77  VGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQA 136
           + +GIA + +NRP++RNA  P   +E+I        D + GV++LTG G EA+ +G D  
Sbjct: 15  IEDGIAFVILNRPEKRNAMSPTLNREMIDVLETLEQDPAAGVLVLTGAG-EAWTAGMDLK 73
Query: 137 LRTRDGYADYENFG---RLNVLDLQVQIRRL-PKPVIAMVAGYAVGGGHVLHMVCDLTIA 192
              R+  A  E      R      Q ++ R+  KP IAMV G+  GGG    + CDL I 
Sbjct: 74  EYFREVDAGPEILQEKIRREASQWQWKLLRMYAKPTIAMVNGWCFGGGFAPLVACDLAIC 133
Query: 193 ADNAIFG 199
           AD A FG
Sbjct: 134 ADEATFG 140

>pdb|2VSU|E Chain E, A Ternary Complex Of Hydroxycinnamoyl-Coa Hydratase-Lyase ( Hchl) With Acetyl-Coenzyme A And Vanillin Gives Insights Into Substrate Specificity And Mechanism Length = 276

Iteration: 1
 Score = 78.2 bits (191), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 48/127 (37%), Positives = 67/127 (52%), Gaps = 5/127 (3%)
Query: 77  VGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQA 136
           + +GIA + +NRP++RNA  P   +E+I        D + GV++LTG G EA+ +G D  
Sbjct: 15  IEDGIAFVILNRPEKRNAMSPTLNREMIDVLETLEQDPAAGVLVLTGAG-EAWTAGMDLK 73
Query: 137 LRTRDGYADYENFG---RLNVLDLQVQIRRL-PKPVIAMVAGYAVGGGHVLHMVCDLTIA 192
              R+  A  E      R      Q ++ R+  KP IAMV G+  GGG    + CDL I 
Sbjct: 74  EYFREVDAGPEILQEKIRREASQWQWKLLRMYAKPTIAMVNGWCFGGGFAPLVACDLAIC 133
Query: 193 ADNAIFG 199
           AD A FG
Sbjct: 134 ADEATFG 140

>pdb|2HW5|A Chain A, The Crystal Structure Of Human Enoyl-Coenzyme A (Coa) Hydratase Short Chain 1, Echs1 Length = 286

Iteration: 1
 Score = 78.2 bits (191), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 57/163 (34%), Positives = 79/163 (48%), Gaps = 13/163 (7%)
Query: 64  SGTEFTDIIYEK-AVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILT 122
           SG  F  II EK      +  I +NRP   NA     + EL +A     +D +VG I+LT
Sbjct: 25  SGANFEYIIAEKRGKNNTVGLIQLNRPKALNALCDGLIDELNQALKIFEEDPAVGAIVLT 84
Query: 123 GKGTEAFCSGGD----QALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVG 178
           G G +AF +G D    Q L  +D Y+          L     + ++ KPVIA V GYA G
Sbjct: 85  G-GDKAFAAGADIKEMQNLSFQDCYSS-------KFLKHWDHLTQVKKPVIAAVNGYAFG 136
Query: 179 GGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLV 221
           GG  L M+CD+  A + A F Q    +G+     G+  ++R V
Sbjct: 137 GGCELAMMCDIIYAGEKAQFAQPEILIGTIPGAGGTQRLTRAV 179

>pdb|2J5I|A Chain A, Crystal Structure Of Hydroxycinnamoyl-Coa Hydratase-Lyase Length = 276

Iteration: 1
 Score = 78.2 bits (191), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 48/127 (37%), Positives = 67/127 (52%), Gaps = 5/127 (3%)
Query: 77  VGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQA 136
           + +GIA + +NRP++RNA  P   +E+I        D + GV++LTG G EA+ +G D  
Sbjct: 15  IEDGIAFVILNRPEKRNAMSPTLNREMIDVLETLEQDPAAGVLVLTGAG-EAWTAGMDLK 73
Query: 137 LRTRDGYADYENFG---RLNVLDLQVQIRRL-PKPVIAMVAGYAVGGGHVLHMVCDLTIA 192
              R+  A  E      R      Q ++ R+  KP IAMV G+  GGG    + CDL I 
Sbjct: 74  EYFREVDAGPEILQEKIRREASQWQWKLLRMYAKPTIAMVNGWCFGGGFSPLVACDLAIC 133
Query: 193 ADNAIFG 199
           AD A FG
Sbjct: 134 ADEATFG 140

>pdb|2J5I|B Chain B, Crystal Structure Of Hydroxycinnamoyl-Coa Hydratase-Lyase Length = 276

Iteration: 1
 Score = 78.2 bits (191), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 48/127 (37%), Positives = 67/127 (52%), Gaps = 5/127 (3%)
Query: 77  VGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQA 136
           + +GIA + +NRP++RNA  P   +E+I        D + GV++LTG G EA+ +G D  
Sbjct: 15  IEDGIAFVILNRPEKRNAMSPTLNREMIDVLETLEQDPAAGVLVLTGAG-EAWTAGMDLK 73
Query: 137 LRTRDGYADYENFG---RLNVLDLQVQIRRL-PKPVIAMVAGYAVGGGHVLHMVCDLTIA 192
              R+  A  E      R      Q ++ R+  KP IAMV G+  GGG    + CDL I 
Sbjct: 74  EYFREVDAGPEILQEKIRREASQWQWKLLRMYAKPTIAMVNGWCFGGGFSPLVACDLAIC 133
Query: 193 ADNAIFG 199
           AD A FG
Sbjct: 134 ADEATFG 140

>pdb|2J5I|I Chain I, Crystal Structure Of Hydroxycinnamoyl-Coa Hydratase-Lyase Length = 276

Iteration: 1
 Score = 78.2 bits (191), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 48/127 (37%), Positives = 67/127 (52%), Gaps = 5/127 (3%)
Query: 77  VGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQA 136
           + +GIA + +NRP++RNA  P   +E+I        D + GV++LTG G EA+ +G D  
Sbjct: 15  IEDGIAFVILNRPEKRNAMSPTLNREMIDVLETLEQDPAAGVLVLTGAG-EAWTAGMDLK 73
Query: 137 LRTRDGYADYENFG---RLNVLDLQVQIRRL-PKPVIAMVAGYAVGGGHVLHMVCDLTIA 192
              R+  A  E      R      Q ++ R+  KP IAMV G+  GGG    + CDL I 
Sbjct: 74  EYFREVDAGPEILQEKIRREASQWQWKLLRMYAKPTIAMVNGWCFGGGFSPLVACDLAIC 133
Query: 193 ADNAIFG 199
           AD A FG
Sbjct: 134 ADEATFG 140

>pdb|3MYB|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase Mycobacterium Smegm Length = 286

Iteration: 1
 Score = 78.2 bits (191), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 50/139 (35%), Positives = 71/139 (51%), Gaps = 5/139 (3%)
Query: 80  GIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGD-QALR 138
           G+  +T+NRP   NA     +  L  AF    +D SV  ++L   G +AFC+G D + +R
Sbjct: 35  GVVTLTLNRPQAFNALSEAMLAALGEAFGTLAEDESVRAVVLAASG-KAFCAGHDLKEMR 93
Query: 139 TRDGYADYEN-FGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAI 197
                  YE  F R    D+ + I+RLP PVIA V G A   G  L  +CDL +A  +A 
Sbjct: 94  AEPSREYYEKLFARCT--DVMLAIQRLPAPVIARVHGIATAAGCQLVAMCDLAVATRDAR 151
Query: 198 FGQTGPKVGSFDAGYGSSI 216
           F  +G  VG F +  G ++
Sbjct: 152 FAVSGINVGLFCSTPGVAL 170

>pdb|2VSS|E Chain E, Wild-Type Hydroxycinnamoyl-Coa Hydratase Lyase In Complex With Acetyl-Coa And Vanillin Length = 276

Iteration: 1
 Score = 77.8 bits (190), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 48/127 (37%), Positives = 67/127 (52%), Gaps = 5/127 (3%)
Query: 77  VGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQA 136
           + +GIA + +NRP++RNA  P   +E+I        D + GV++LTG G EA+ +G D  
Sbjct: 15  IEDGIAFVILNRPEKRNAMSPTLNREMIDVLETLEQDPAAGVLVLTGAG-EAWTAGMDLK 73
Query: 137 LRTRDGYADYENFG---RLNVLDLQVQIRRL-PKPVIAMVAGYAVGGGHVLHMVCDLTIA 192
              R+  A  E      R      Q ++ R+  KP IAMV G+  GGG    + CDL I 
Sbjct: 74  EYFREVDAGPEILQEKIRREASQWQWKLLRMYAKPTIAMVNGWCFGGGFSPLVACDLAIC 133
Query: 193 ADNAIFG 199
           AD A FG
Sbjct: 134 ADEATFG 140

>pdb|1UIY|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase From Thermus Thermophilus Hb8 Length = 253

Iteration: 1
 Score = 77.0 bits (188), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 51/143 (35%), Positives = 73/143 (51%), Gaps = 4/143 (2%)
Query: 81  IAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTR 140
           +A + +N P+RRN   P     L++A +D   D  V  ++LTG+G +AF +G D A   R
Sbjct: 9   VAVVFLNDPERRNPLSPEXALSLLQALDDLEADPGVRAVVLTGRG-KAFSAGADLAFLER 67
Query: 141 DGYADYENFGR--LNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIF 198
                 E   R  L++  L  ++   PKP +A V G AV GG  L + CDL +  + A  
Sbjct: 68  VTELGAEENYRHSLSLXRLFHRVYTYPKPTVAAVNGPAVAGGAGLALACDLVVXDEEARL 127
Query: 199 GQTGPKVGSFDAGYGSSIMSRLV 221
           G T  K+G F A   S I+ R V
Sbjct: 128 GYTEVKIG-FVAALVSVILVRAV 149

>pdb|3P5M|A Chain A, Crystal Structure Of An Enoyl-Coa HydrataseISOMERASE FROM Mycobacterium Avium Length = 255

Iteration: 1
 Score = 75.1 bits (183), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 58/170 (34%), Positives = 81/170 (47%), Gaps = 22/170 (12%)
Query: 81  IAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTR 140
           + +I ++RP++ NA     ++EL     DA  D SV  ++LTG G  AFCSGGD      
Sbjct: 16  VLRIRLDRPEKLNAVDTPMLEELSVHIRDAEADESVRAVLLTGAG-RAFCSGGDLTGGDT 74
Query: 141 DGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQ 200
            G AD  N        +   I  LPKPVIA V G AVG G  L + CDL +AA  + F  
Sbjct: 75  AGAADAAN-------RVVRAITSLPKPVIAGVHGAAVGFGCSLALACDLVVAAPASYFQL 127
Query: 201 TGPKVGSFDAGYGSSIM---------SRLVSTVQQ-----CLWWGLKKHV 236
              +VG    G  S+++         SR+  T ++        WG+  H+
Sbjct: 128 AFTRVGLMPDGGASALLPLLIGRARTSRMAMTAEKISAATAFEWGMISHI 177

>pdb|3HE2|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase From Mycobacterium Tuberculosis Length = 264

Iteration: 1
 Score = 75.1 bits (183), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 46/122 (37%), Positives = 66/122 (54%), Gaps = 10/122 (8%)
Query: 78  GEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQAL 137
            E +  I + RP+RRNA     V+EL +A   A  D S   I+LTG+GT AFC+G D   
Sbjct: 28  AEAVLTIELQRPERRNALNSQLVEELTQAIRKA-GDGSARAIVLTGQGT-AFCAGAD--- 82
Query: 138 RTRDGYA-DYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNA 196
            + D +A DY +     +++L   +   P PV+  + G A+G G  L M CDL + A +A
Sbjct: 83  LSGDAFAADYPD----RLIELHKAMDASPMPVVGAINGPAIGAGLQLAMQCDLRVVAPDA 138
Query: 197 IF 198
            F
Sbjct: 139 FF 140

>pdb|3KQF|A Chain A, 1.8 Angstrom Resolution Crystal Structure Of Enoyl-Coa Hydratase From Bacillus Anthracis. Length = 265

Iteration: 1
 Score = 72.4 bits (176), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 44/142 (30%), Positives = 77/142 (54%), Gaps = 3/142 (2%)
Query: 81  IAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTR 140
           + KI++NR  + N+     ++EL        ++++  V+ILTG G +AFC+G D  L+ R
Sbjct: 19  VVKISLNRERQANSLSLALLEELQNILTQINEEANTRVVILTGAGEKAFCAGAD--LKER 76
Query: 141 DGYADYENFGRLNVLDLQVQ-IRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFG 199
            G  + +    ++ +    + + +LP+PVIA + G A+GGG  L + CD  IAA++A  G
Sbjct: 77  AGXNEEQVRHAVSXIRTTXEXVEQLPQPVIAAINGIALGGGTELSLACDFRIAAESASLG 136
Query: 200 QTGPKVGSFDAGYGSSIMSRLV 221
            T   +       G+  + RL+
Sbjct: 137 LTETTLAIIPGAGGTQRLPRLI 158

>pdb|3TLF|A Chain A, Crystal Structure Of An Enoyl-Coa HydrataseISOMERASE FROM Mycobacterium Paratuberculosis Length = 274

Iteration: 1
 Score = 71.6 bits (174), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 50/138 (36%), Positives = 66/138 (47%), Gaps = 11/138 (7%)
Query: 68  FTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTE 127
           F  I YE  V    A IT+NRPD  NA  PH + EL  A+++A +D  V ++++TG G  
Sbjct: 10  FDTIKYE--VDGHTATITLNRPDALNALSPHMITELRAAYHEAENDDRVWLLVVTGTG-R 66
Query: 128 AFCSGGDQALRTRDGYADYENFGRLNVLDL-------QVQIRRLPKPVIAMVAGYAVGGG 180
           AFCSG D      DG   YE    L+  D            R + KPV+  V G   G G
Sbjct: 67  AFCSGADVKEIPEDGKVIYER-PYLSTYDQWEAPQEGTPPFRTMAKPVLTAVNGICCGAG 125
Query: 181 HVLHMVCDLTIAADNAIF 198
                  D+ IA++ A F
Sbjct: 126 MDWVTTTDIVIASEQATF 143

>pdb|3T3W|A Chain A, Crystal Structure Of Probable Enoyl-Coa Hydratase From Mycobacterium Thermoresistibile Length = 279

Iteration: 1
 Score = 71.6 bits (174), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 50/137 (36%), Positives = 72/137 (52%), Gaps = 11/137 (8%)
Query: 69  TDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEA 128
           T++  +  V + IA IT+NRP+  NA  P  + EL  A+  A +D+ V VI+L   G   
Sbjct: 18  TEMYIDYDVSDRIATITLNRPEAANAQNPELLDELDAAWTRAAEDNDVSVIVLRANGKH- 76
Query: 129 FCSGGDQALRTRDGYAD-------YENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGH 181
           F +G D  LR      D       Y +  R   L+  ++ R +PKP IA V G  + GG 
Sbjct: 77  FSAGHD--LRGGGPVPDKLTLEFIYAHESR-RYLEYSLRWRNVPKPSIAAVQGRCISGGL 133
Query: 182 VLHMVCDLTIAADNAIF 198
           +L   CDL IAA++A+F
Sbjct: 134 LLCWPCDLIIAAEDALF 150

>pdb|1JXZ|A Chain A, Structure Of The H90q Mutant Of 4-Chlorobenzoyl-Coenzyme A Dehalogenase Complexed With 4-Hydroxybenzoyl-Coenzyme A (Product) Length = 269

Iteration: 1
 Score = 71.2 bits (173), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 49/149 (32%), Positives = 78/149 (52%), Gaps = 5/149 (3%)
Query: 77  VGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGD-Q 135
           V +G+A+ITI  P  RNA     ++E+  A N A +D SVG +++TG   +AFC+G   +
Sbjct: 9   VEDGVAEITIKLPRHRNALSVKAMQEVTDALNRAEEDDSVGAVMITG-AEDAFCAGFYLR 67
Query: 136 ALRTRDGYADYENFGRLNVLDLQVQIR---RLPKPVIAMVAGYAVGGGHVLHMVCDLTIA 192
            +    G A   +  R+  L  Q  I    R+ +PV+A + G A GGG  + +  D+ I 
Sbjct: 68  EIPLDKGVAGVRDHFRIAALWWQQMIHKIIRVKRPVLAAINGVAAGGGLGISLASDMAIC 127
Query: 193 ADNAIFGQTGPKVGSFDAGYGSSIMSRLV 221
           AD+A F      +G  +    S  ++R+V
Sbjct: 128 ADSAKFVCAWHTIGIGNDTATSYSLARIV 156

>pdb|3OME|A Chain A, Crystal Structure Of A Probable Enoyl-Coa Hydratase From Mycobacterium Smegmatis Length = 282

Iteration: 1
 Score = 70.5 bits (171), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 48/130 (36%), Positives = 66/130 (50%), Gaps = 13/130 (10%)
Query: 77  VGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQA 136
           V + IA IT+NRP+  NA  P  + EL  A+  A +D+ V VIIL   G   F +G D  
Sbjct: 29  VADSIATITLNRPEAANAQNPELLDELDAAWTRAAEDNEVKVIILRANGKH-FSAGHD-- 85
Query: 137 LRTRDGYADYENFGRLNV--------LDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCD 188
              R G    E      +        LD  ++ R +PKP IA V G  + GG +L   CD
Sbjct: 86  --LRGGGEVPEKISLEFIIQHEARRYLDYTLRWRNVPKPSIAAVQGRCISGGLLLCWPCD 143
Query: 189 LTIAADNAIF 198
           L +A+D+A+F
Sbjct: 144 LILASDDALF 153

>pdb|3QKA|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase Echa5 From Mycobacterium Marinum Length = 261

Iteration: 1
 Score = 70.1 bits (170), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 49/135 (36%), Positives = 67/135 (49%), Gaps = 5/135 (3%)
Query: 65  GTEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGK 124
           G+  +D++  +  G  +  + INRP  RNA    T   L  AF +   D S  V +L G 
Sbjct: 3   GSMVSDLVQVERNGP-VTTVIINRPQARNAVNGPTAAALYSAFAEFDRDESASVAVLCGN 61
Query: 125 GTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLH 184
           G   FC+G D  L+   G A+     R     +      L KPVIA V+GYAV GG  L 
Sbjct: 62  GGT-FCAGAD--LKAF-GTAEANAVHRTGPGPMGPSRMMLSKPVIAAVSGYAVAGGLELA 117
Query: 185 MVCDLTIAADNAIFG 199
           + CDL +A  +A+FG
Sbjct: 118 LWCDLRVAEQDAVFG 132

>pdb|1NZY|A Chain A, 4-Chlorobenzoyl Coenzyme A Dehalogenase From Pseudomonas Sp. Strain Cbs-3 Length = 269

Iteration: 1
 Score = 69.7 bits (169), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 48/149 (32%), Positives = 79/149 (53%), Gaps = 5/149 (3%)
Query: 77  VGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGD-Q 135
           V +G+A+ITI  P  RNA     ++E+  A N A +D SVG +++TG   +AFC+G   +
Sbjct: 9   VEDGVAEITIKLPRHRNALSVKAMQEVTDALNRAEEDDSVGAVMITG-AEDAFCAGFYLR 67
Query: 136 ALRTRDGYADYENFGRLNVL---DLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIA 192
            +    G A   +  R+  L    +  +I R+ +PV+A + G A GGG  + +  D+ I 
Sbjct: 68  EIPLDKGVAGVRDHFRIAALWWHQMIHKIIRVKRPVLAAINGVAAGGGLGISLASDMAIC 127
Query: 193 ADNAIFGQTGPKVGSFDAGYGSSIMSRLV 221
           AD+A F      +G  +    S  ++R+V
Sbjct: 128 ADSAKFVCAWHTIGIGNDTATSYSLARIV 156

>pdb|1NZY|B Chain B, 4-Chlorobenzoyl Coenzyme A Dehalogenase From Pseudomonas Sp. Strain Cbs-3 Length = 269

Iteration: 1
 Score = 69.7 bits (169), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 48/149 (32%), Positives = 79/149 (53%), Gaps = 5/149 (3%)
Query: 77  VGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGD-Q 135
           V +G+A+ITI  P  RNA     ++E+  A N A +D SVG +++TG   +AFC+G   +
Sbjct: 9   VEDGVAEITIKLPRHRNALSVKAMQEVTDALNRAEEDDSVGAVMITG-AEDAFCAGFYLR 67
Query: 136 ALRTRDGYADYENFGRLNVL---DLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIA 192
            +    G A   +  R+  L    +  +I R+ +PV+A + G A GGG  + +  D+ I 
Sbjct: 68  EIPLDKGVAGVRDHFRIAALWWHQMIHKIIRVKRPVLAAINGVAAGGGLGISLASDMAIC 127
Query: 193 ADNAIFGQTGPKVGSFDAGYGSSIMSRLV 221
           AD+A F      +G  +    S  ++R+V
Sbjct: 128 ADSAKFVCAWHTIGIGNDTATSYSLARIV 156

>pdb|3P85|A Chain A, Crystal Structure Enoyl-Coa Hydratase From Mycobacterium Avium Length = 270

Iteration: 1
 Score = 68.6 bits (166), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 48/140 (34%), Positives = 64/140 (45%), Gaps = 13/140 (9%)
Query: 68  FTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTE 127
            TD I      E +  +T+NRP  RNA           A  DA  D  V V+I+TG    
Sbjct: 22  MTDEILLSNTEERVRTLTLNRPQARNALSAALRDRFFGALADAETDDDVDVVIITG-ADP 80
Query: 128 AFCSGGDQALRTRDGYADYENFGRLNVL-DLQVQIRRLPKPVIAMVAGYAVGGGHVLHMV 186
            FC+G            D +  G  + L D+  +   L KPVI  + G AV GG  L + 
Sbjct: 81  VFCAG-----------LDLKELGGSSALPDISPRWPALTKPVIGAINGAAVTGGLELALY 129
Query: 187 CDLTIAADNAIFGQTGPKVG 206
           CD+ IA++NA F  T  +VG
Sbjct: 130 CDILIASENARFADTHARVG 149

>pdb|3QYR|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase Echa16_2 Mycobacterium Paratuberculosis Atcc Baa-968 K-10 Length = 253

Iteration: 1
 Score = 68.6 bits (166), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 48/140 (34%), Positives = 64/140 (45%), Gaps = 13/140 (9%)
Query: 68  FTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTE 127
            TD I      E +  +T+NRP  RNA           A  DA  D  V V+I+TG    
Sbjct: 5   MTDEILLSNTEERVRTLTLNRPQARNALSAALRDRFFGALADAETDDDVDVVIITG-ADP 63
Query: 128 AFCSGGDQALRTRDGYADYENFGRLNVL-DLQVQIRRLPKPVIAMVAGYAVGGGHVLHMV 186
            FC+G            D +  G  + L D+  +   L KPVI  + G AV GG  L + 
Sbjct: 64  VFCAG-----------LDLKELGGSSALPDISPRWPALTKPVIGAINGAAVTGGLELALY 112
Query: 187 CDLTIAADNAIFGQTGPKVG 206
           CD+ IA++NA F  T  +VG
Sbjct: 113 CDILIASENARFADTHARVG 132

>pdb|3R0O|A Chain A, Crystal Structure Of Carnitinyl-Coa Hydratase From Mycobacterium Avium Length = 273

Iteration: 1
 Score = 68.2 bits (165), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 46/138 (33%), Positives = 71/138 (51%), Gaps = 11/138 (7%)
Query: 68  FTDIIYEKAVGE---GIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGK 124
            T++  + AV E    +A ITI+RPD RNA        +  A  +A+ D  V  +++TG 
Sbjct: 9   LTEVTRQAAVVERRGNVALITIDRPDARNAVNGAVSTAVGDALEEAQRDPEVWAVVITGA 68
Query: 125 GTEAFCSGGDQALRTRDG---YADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGH 181
           G ++FC+G D    +R     +A++  +G    +   +      KP IA V G A+GGG 
Sbjct: 69  GDKSFCAGADLKAISRGENLYHAEHPEWGFAGYVHHFID-----KPTIAAVNGTALGGGS 123
Query: 182 VLHMVCDLTIAADNAIFG 199
            L +  DL IA ++A FG
Sbjct: 124 ELALASDLVIACESASFG 141

>pdb|4F47|A Chain A, The Structure Of Enoyl-Coa Hydratase Echa19 From Mycobacterium Marinum Length = 278

Iteration: 1
 Score = 68.2 bits (165), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 46/155 (29%), Positives = 76/155 (49%), Gaps = 3/155 (1%)
Query: 84  ITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGY 143
           +T+NRP RRNA     ++ ++ A++   +D  +   ILTG G   FC+G D    T+   
Sbjct: 33  VTMNRPSRRNALSGEMMQIMVEAWDRVDNDPDIRCCILTGAGG-YFCAGMDLKAATKKPP 91
Query: 144 ADYENFGRLNV--LDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQT 201
            D    G  +   +D  ++ RRL KP+IA V G A+ GG  +    D+ +AA++A FG +
Sbjct: 92  GDSFKDGSYDPSRIDALLKGRRLKKPLIAAVEGPAIAGGTEILQGTDIRVAAESAKFGIS 151
Query: 202 GPKVGSFDAGYGSSIMSRLVSTVQQCLWWGLKKHV 236
             K   +  G  +  + R +     C      +H+
Sbjct: 152 EAKWSLYPMGGSAVRLVRQIPYTVACDLLLTGRHI 186

>pdb|2PBP|A Chain A, Crystal Structure Of Enoyl-Coa Hydrates Subunit I (Gk_2039) From Geobacillus Kaustophilus Hta426 Length = 258

Iteration: 1
 Score = 67.0 bits (162), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 52/174 (29%), Positives = 80/174 (45%), Gaps = 8/174 (4%)
Query: 66  TEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKG 125
           +EF  I   +    GI  I + RPD  NA     V E++ A      +  V VI+LTG+G
Sbjct: 2   SEFVSIAARQEGAVGI--IELARPDVLNALSRQMVAEIVAAVEAFDRNEKVRVIVLTGRG 59
Query: 126 TEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHM 185
             AF +G D     +D     E   +    D   ++  +  P+IA V G A+GGG  L +
Sbjct: 60  -RAFAAGADIQEMAKDDPIRLEWLNQFADWD---RLSIVKTPMIAAVNGLALGGGFELAL 115
Query: 186 VCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVSTVQ--QCLWWGLKKHVK 237
            CDL +A+  A FG     +G      G+  +++L+   +  + LW G +   K
Sbjct: 116 SCDLIVASSAAEFGFPEVNLGVMPGAGGTQRLTKLIGPKRALEWLWTGARMSAK 169

>pdb|4FZW|A Chain A, Crystal Structure Of The Paaf-paag Hydratase-isomerase Complex From E.coli Length = 258

Iteration: 1
 Score = 65.9 bits (159), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 45/145 (31%), Positives = 70/145 (48%), Gaps = 7/145 (4%)
Query: 84  ITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGY 143
           +T+NRP  RNA     + +L+     A  D+S+ V ++TG     F +G D         
Sbjct: 18  LTLNRPAARNALNNALLMQLVNELEAAATDTSISVCVITGNA-RFFAAGADLNEMAEKDL 76
Query: 144 ADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGP 203
           A   N  R     L  +++   KP+IA V GYA+G G  L ++CD+ +A +NA FG    
Sbjct: 77  AATLNDTRPQ---LWARLQAFNKPLIAAVNGYALGAGCELALLCDVVVAGENARFGLPEI 133
Query: 204 KVGSFDAGYGSSIMSRLVSTVQQCL 228
            +G      G+    RL+ +V + L
Sbjct: 134 TLGIMPGAGGT---QRLIRSVGKSL 155

>pdb|3R9T|A Chain A, Structure Of Echa1_1 From Mycobacterium Paratuberculosis Atcc Baa-968 K-10 Length = 267

Iteration: 1
 Score = 65.5 bits (158), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 46/133 (34%), Positives = 67/133 (50%), Gaps = 8/133 (6%)
Query: 84  ITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGD-QALRTRDG 142
           ITINRP+ RNA        +  A  +A+ D  V  ++LTG G ++FC+G D +A+  R+ 
Sbjct: 22  ITINRPEARNAINAAVSIGVGDALEEAQHDPEVRAVVLTGAGDKSFCAGADLKAIARREN 81
Query: 143 --YADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQ 200
             + D+  +G    +   +      KP IA V G A+GGG  L +  DL +A + A FG 
Sbjct: 82  LYHPDHPEWGFAGYVRHFID-----KPTIAAVNGTALGGGTELALASDLVVADERAQFGL 136
Query: 201 TGPKVGSFDAGYG 213
              K G   A  G
Sbjct: 137 PEVKRGLIAAAGG 149

>pdb|3SLL|A Chain A, Crystal Structure Of A Probable Enoyl-Coa HydrataseISOMERASE FROM Mycobacterium Abscessus Length = 290

Iteration: 1
 Score = 65.5 bits (158), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 49/162 (30%), Positives = 78/162 (48%), Gaps = 32/162 (19%)
Query: 81  IAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQ----- 135
           IA +T+NRP+R NA     +    +   D   D+ V  +++TG G + FCSG DQ     
Sbjct: 34  IALVTLNRPERMNAMAFDVMLPFKQMLVDISHDNDVRAVVITGAG-KGFCSGADQKSAGP 92
Query: 136 ------------ALRTRDGYADYENFGRLNVLD-LQVQIRRLPKPVIAMVAGYAVGGGHV 182
                       ALR+            + +LD + + +RR+ +PVIA + G A+GGG  
Sbjct: 93  IPHIGGLTQPTIALRS------------MELLDEVILTLRRMHQPVIAAINGAAIGGGLC 140
Query: 183 LHMVCDLTIAADNAIFGQTGPKVGSFDAGYG-SSIMSRLVST 223
           L + CD+ +A+ +A F   G   G   +  G S ++ R + T
Sbjct: 141 LALACDVRVASQDAYFRAAGINNGLTASELGLSYLLPRAIGT 182

>pdb|3R9S|A Chain A, Structure Of A Carnitinyl-Coa Dehydratase From Mycobacterium Avium 104 Length = 267

Iteration: 1
 Score = 65.5 bits (158), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 46/133 (34%), Positives = 67/133 (50%), Gaps = 8/133 (6%)
Query: 84  ITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGD-QALRTRDG 142
           ITINRP+ RNA        +  A  +A+ D  V  ++LTG G ++FC+G D +A+  R+ 
Sbjct: 22  ITINRPEARNAVNAAVSIGVGDALEEAQHDPEVRAVVLTGAGDKSFCAGADLKAIARREN 81
Query: 143 --YADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQ 200
             + D+  +G    +   +      KP IA V G A+GGG  L +  DL +A + A FG 
Sbjct: 82  LYHPDHPEWGFAGYVRHFID-----KPTIAAVNGTALGGGTELALASDLVVADERAQFGL 136
Query: 201 TGPKVGSFDAGYG 213
              K G   A  G
Sbjct: 137 PEVKRGLIAAAGG 149

>pdb|2VX2|A Chain A, Crystal Structure Of Human Enoyl Coenzyme A Hydratase Domain-Containing Protein 3 (Echdc3) Length = 287

Iteration: 1
 Score = 62.8 bits (151), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 43/138 (31%), Positives = 63/138 (45%), Gaps = 1/138 (0%)
Query: 79  EGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALR 138
           +GI  I ++ P +RN      +K L        D + + VII++ +G   F SG D    
Sbjct: 41  DGIRNIVLSNPKKRNTLSLAMLKSLQSDILHDADSNDLKVIIISAEGP-VFSSGHDLKEL 99
Query: 139 TRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIF 198
           T +   DY          + + IR  P PVIAMV G A   G  L   CD+ +A+D + F
Sbjct: 100 TEEQGRDYHAEVFQTCSKVMMHIRNHPVPVIAMVNGLATAAGCQLVASCDIAVASDKSSF 159
Query: 199 GQTGPKVGSFDAGYGSSI 216
              G  VG F +  G ++
Sbjct: 160 ATPGVNVGLFCSTPGVAL 177

>pdb|4DI1|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase Echa17 From Mycobacterium Marinum Length = 277

Iteration: 1
 Score = 62.0 bits (149), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 44/140 (31%), Positives = 70/140 (50%), Gaps = 11/140 (7%)
Query: 64  SGTEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTG 123
           S  EF  ++ ++    G+A + ++RP   NA      +E++ A ++      +G ++L G
Sbjct: 21  SMNEFVSVVADQ----GLATLVVSRPPT-NAMTRQVYREIVAAADELGRRDDIGAVVLFG 75
Query: 124 KGTEAFCSGGDQA-LRTRDG-YADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGH 181
            G E F +G D   LRT +   AD     RL  +D    +  +PKP +A V GYA+G G 
Sbjct: 76  -GHEIFSAGDDMPELRTLNAPEADTAARVRLEAID---AVAAIPKPTVAAVTGYALGAGL 131
Query: 182 VLHMVCDLTIAADNAIFGQT 201
            L +  D  ++ DN  FG T
Sbjct: 132 TLALAADWRVSGDNVKFGAT 151

>pdb|3I47|A Chain A, Crystal Structure Of Putative Enoyl Coa HydrataseISOMERASE (Crotonase) From Legionella Pneumophila Subsp. Pneumophila Str. Philadelphia 1 Length = 268

Iteration: 1
 Score = 60.5 bits (145), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 47/141 (33%), Positives = 76/141 (53%), Gaps = 5/141 (3%)
Query: 68  FTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTE 127
            +D++YE  + + +  +T+NR  + NAF    + E+    + A +D++V VI+L   G  
Sbjct: 3   LSDLLYE--IQDKVGLLTMNRISKHNAFDNQLLTEMRIRLDSAINDTNVRVIVLKANGKH 60
Query: 128 AFCSGGDQA-LRTRDGYADYENFGRLNVL-DLQVQIRRLPKPVIAMVAGYAVGGGHVLHM 185
            F +G D   +++   + + EN     VL +L   I + PKP IAMV G A GGG  L  
Sbjct: 61  -FSAGADLTWMQSMANFTEEENLEDSLVLGNLMYSISQSPKPTIAMVQGAAFGGGAGLAA 119
Query: 186 VCDLTIAADNAIFGQTGPKVG 206
            CD+ IA+ +A F  +  K+G
Sbjct: 120 ACDIAIASTSARFCFSEVKLG 140

>pdb|3PE8|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase From Mycobacterium Smegmatis Length = 256

Iteration: 1
 Score = 60.5 bits (145), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 44/127 (34%), Positives = 63/127 (49%), Gaps = 13/127 (10%)
Query: 81  IAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTR 140
           +  +T+NRP  RNA          RA +DA++D  V V+I+TG     FC+G        
Sbjct: 19  VRTLTLNRPQSRNALSAELRSTFFRALSDAQNDDDVDVVIVTG-ADPVFCAG-------- 69
Query: 141 DGYADYENFGRLNVL-DLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFG 199
               D +  G    L D+  +   + KPVI  + G AV GG  L + CD+ IA++NA F 
Sbjct: 70  ---LDLKELGDTTELPDISPKWPDMTKPVIGAINGAAVTGGLELALYCDILIASENAKFA 126
Query: 200 QTGPKVG 206
            T  +VG
Sbjct: 127 DTHARVG 133

>pdb|3TRR|A Chain A, Crystal Structure Of A Probable Enoyl-Coa HydrataseISOMERASE FROM Mycobacterium Abscessus Length = 256

Iteration: 1
 Score = 60.1 bits (144), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 42/117 (35%), Positives = 57/117 (48%), Gaps = 10/117 (8%)
Query: 84  ITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGD-QALRTRDG 142
           ITINRPD RNA      + L  A +     + + V I+TG G   FC+G D +A  + + 
Sbjct: 20  ITINRPDARNAVNRAVSQGLAAAADQLDSSADLSVAIITGAGGN-FCAGMDLKAFVSGEA 78
Query: 143 YADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFG 199
                  G  NV           KP+IA V G+A+ GG  L + CDL +A  +A FG
Sbjct: 79  VLSERGLGFTNVPPR--------KPIIAAVEGFALAGGTELVLSCDLVVAGRSAKFG 127

>pdb|3RSI|A Chain A, The Structure Of A Putative Enoyl-Coa HydrataseISOMERASE FROM Mycobacterium Abscessus Atcc 19977 DSM 44196 Length = 265

Iteration: 1
 Score = 59.7 bits (143), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 42/121 (34%), Positives = 62/121 (51%), Gaps = 11/121 (9%)
Query: 84  ITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGD--QALRTRD 141
           +T+NRP RRNA   + V +   A+++   D  +   ILTG G+ A+C GGD       RD
Sbjct: 22  LTMNRPHRRNALSTNMVSQFAAAWDEIDHDDGIRAAILTGAGS-AYCVGGDLSDGWMVRD 80
Query: 142 GYA---DYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIF 198
           G A   D    G+  +L        L KP+IA V G  +GGG  +    D+ ++ ++A F
Sbjct: 81  GSAPPLDPATIGKGLLLS-----HTLTKPLIAAVNGACLGGGCEMLQQTDIRVSDEHATF 135
Query: 199 G 199
           G
Sbjct: 136 G 136

>pdb|3QXI|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase Echa1 From Mycobacterium Marinum Length = 265

Iteration: 1
 Score = 58.5 bits (140), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 42/116 (36%), Positives = 56/116 (48%), Gaps = 7/116 (6%)
Query: 84  ITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGY 143
           ITINRP  +N+      + L  A +    D+ + V ILTG G  +FC+G D     R   
Sbjct: 28  ITINRPKAKNSVNAAVSRALADAMDRLDADAGLSVGILTGAGG-SFCAGMDLKAFARGEN 86
Query: 144 ADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFG 199
              E  G      L    R   KP+IA V GYA+ GG  L +  DL +AA ++ FG
Sbjct: 87  VVVEGRG------LGFTERPPAKPLIAAVEGYALAGGTELALATDLIVAARDSAFG 136

>pdb|2F6Q|A Chain A, The Crystal Structure Of Human Peroxisomal Delta3, Delta2 Enoyl Coa Isomerase (Peci) Length = 280

Iteration: 1
 Score = 58.5 bits (140), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 49/160 (30%), Positives = 72/160 (45%), Gaps = 7/160 (4%)
Query: 79  EGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALR 138
           +GI KI  NRP ++NA       E+ RA   A  D S+ + +LTG G + + SG D    
Sbjct: 34  DGITKIXFNRPKKKNAINTEXYHEIXRALKAASKDDSI-ITVLTGNG-DYYSSGNDLTNF 91
Query: 139 TRDGYADYENFGRLNVLDLQVQIR---RLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADN 195
           T       E   + N + L+  +      PKP+IA+V G AVG    L  + D   A+D 
Sbjct: 92  TDIPPGGVEEKAKNNAVLLREFVGCFIDFPKPLIAVVNGPAVGISVTLLGLFDAVYASDR 151
Query: 196 AIFGQTGPKVGSFDAGYGSSIMSRLVSTVQ--QCLWWGLK 233
           A F      +G    G  S    ++ S  +  + L +G K
Sbjct: 152 ATFHTPFSHLGQSPEGCSSYTFPKIXSPAKATEXLIFGKK 191

>pdb|3QRE|A Chain A, Crystal Structure Of An Enoyl-Coa Hydratase Echa12_1 From Mycobacterium Marinum Length = 298

Iteration: 1
 Score = 57.8 bits (138), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 45/128 (35%), Positives = 63/128 (49%), Gaps = 13/128 (10%)
Query: 71  IIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFC 130
           ++YE   G G+A IT NR DR NA+ P        A + A  D  + VI+LTG+G   FC
Sbjct: 31  VLYEATPG-GVAIITFNRADRLNAWGPDLAAGFYAAIDRAEADPGIRVIVLTGRG-RGFC 88
Query: 131 SGGDQALRTRDGYADYENF----GRLNVLDLQVQ-----IRRLPKPVIAMVAGYAVGGGH 181
           +G    L + D  A Y+         N+ DL  +     +  L KPVIA + G  VG G 
Sbjct: 89  AGA--YLGSADAAAGYDKTMAKAKDANLADLVGERPPHFVTMLRKPVIAAINGPCVGIGL 146
Query: 182 VLHMVCDL 189
              ++CD+
Sbjct: 147 TQALMCDV 154

>pdb|3QXZ|A Chain A, Crystal Structure Of A Probable Enoyl-Coa HydrataseISOMERASE FROM Mycobacterium Abscessus Length = 265

Iteration: 1
 Score = 57.4 bits (137), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 49/161 (30%), Positives = 76/161 (47%), Gaps = 9/161 (5%)
Query: 65  GTEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGK 124
           G+  T++  E  + +G+A +T++ P  RN+F     ++L  A+    DD +V VI+LTG 
Sbjct: 3   GSMVTELHEE--IRDGVAVLTLHGPSTRNSFTVELGRQLGAAYQRLDDDPAVRVIVLTG- 59
Query: 125 GTEAFCSGGDQALRTRDGYADYEN--FGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHV 182
              AFCSG  Q     + +A   N  F    V     ++R    PVIA V G+A+G G  
Sbjct: 60  APPAFCSGA-QISAAAETFAAPRNPDFSASPVQPAAFELR---TPVIAAVNGHAIGIGMT 115
Query: 183 LHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVST 223
           L +  D+ I A+   +     + G          + RLV T
Sbjct: 116 LALHADIRILAEEGRYAIPQVRFGVAPDALAHWTLPRLVGT 156

>pdb|2VRE|A Chain A, Crystal Structure Of Human Peroxisomal Delta3,5, Delta2,4-Dienoyl Coa Isomerase Length = 296

Iteration: 1
 Score = 56.6 bits (135), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 44/154 (28%), Positives = 66/154 (42%), Gaps = 32/154 (20%)
Query: 81  IAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSG-------- 132
           +  + +NRP++RNA      +E++  FN    D+    ++++G G + F +G        
Sbjct: 41  VLHVQLNRPNKRNAMNKVFWREMVECFNKISRDADCRAVVISGAG-KMFTAGIDLMDMAS 99
Query: 133 ------GDQALRT----RDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHV 182
                 GD   R     RD    Y+     NV      I R PKPVIA V G  +GGG  
Sbjct: 100 DILQPKGDDVARISWYLRDIITRYQE--TFNV------IERCPKPVIAAVHGGCIGGGVD 151
Query: 183 LHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSI 216
           L   CD+   A +A F     +V   D G  + +
Sbjct: 152 LVTACDIRYCAQDAFF-----QVKEVDVGLAADV 180

>pdb|3OC7|A Chain A, Crystal Structure Of An Enoyl-Coa Hydratase From Mycobacterium Avium Length = 267

Iteration: 1
 Score = 55.5 bits (132), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 44/159 (27%), Positives = 68/159 (42%), Gaps = 9/159 (5%)
Query: 68  FTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTE 127
             D     A G  +A++T+N P  RNA     V +L +   DA  D +V V++L   G  
Sbjct: 8   LVDYAGPAATGGPVARLTLNSPHNRNALSTALVSQLHQGLRDASSDPAVRVVVLAHTGG- 66
Query: 128 AFCSGGDQALRTRDGYAD------YENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGH 181
            FC+G D +     G          E    +  L   +   RL  PVIA + G+   GG 
Sbjct: 67  TFCAGADLSEAGSGGSPSSAYDMAVERAREMAALMRAIVESRL--PVIAAIDGHVRAGGF 124
Query: 182 VLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRL 220
            L   CD+ +A   + F  T  ++G   A    +++ +L
Sbjct: 125 GLVGACDIAVAGPRSSFALTEARIGVAPAIISLTLLPKL 163

>pdb|3HRX|A Chain A, Crystal Structure Of Phenylacetic Acid Degradation Protein Paag Length = 254

Iteration: 1
 Score = 55.1 bits (131), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 48/156 (30%), Positives = 74/156 (47%), Gaps = 9/156 (5%)
Query: 79  EGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALR 138
           +G+  +T+NRP++ NA     +  L  A  +  +D  V  ++LTG G  AF +G D    
Sbjct: 8   DGVLVLTLNRPEKLNAITGELLDALYAALKEGEEDREVRALLLTGAG-RAFSAGQDLT-E 65
Query: 139 TRDGYADYE-NFGRLN-VLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNA 196
             D   DYE +  R N V++    +  L KP++  V G A G G  L +  DL +AA  A
Sbjct: 66  FGDRKPDYEAHLRRYNRVVE---ALSGLEKPLVVAVNGVAAGAGMSLALWGDLRLAAVGA 122
Query: 197 IFGQTGPKVGSFDAGYGSSIMSRLV--STVQQCLWW 230
            F     ++G       S ++ RLV  +  Q+ L  
Sbjct: 123 SFTTAFVRIGLVPDSGLSFLLPRLVGLAKAQELLLL 158

>pdb|3QMJ|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase Echa8_6 From Mycobacterium Marinum Length = 256

Iteration: 1
 Score = 53.9 bits (128), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 43/150 (28%), Positives = 64/150 (42%), Gaps = 4/150 (2%)
Query: 81  IAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQA-LRT 139
           +  +T+NRP+  NAF         +A  DA DD  V V++LTG G   F +G D A ++ 
Sbjct: 16  VRTLTLNRPEALNAFNEALYDATAQALLDAADDPQVAVVLLTGSG-RGFSAGTDLAEMQA 74
Query: 140 RDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFG 199
           R    ++   G+     L   +   PKP+I  V G  VG G  +    DL   +  A   
Sbjct: 75  RITDPNFSE-GKFGFRGLIKALAGFPKPLICAVNGLGVGIGATILGYADLAFMSSTARLK 133
Query: 200 QTGPKVGSFDAGYGSSIMSRLVSTVQQCLW 229
                +G       S ++ +LV   Q   W
Sbjct: 134 CPFTSLGVAPEAASSYLLPQLVGR-QNAAW 162

>pdb|2EJ5|A Chain A, Crystal Structure Of Gk2038 Protein (Enoyl-Coa Hydratase Subunit Ii) From Geobacillus Kaustophilus Length = 257

Iteration: 1
 Score = 53.5 bits (127), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 49/146 (33%), Positives = 73/146 (50%), Gaps = 6/146 (4%)
Query: 68  FTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTE 127
           +  I YE  V   +A +T+NRPD+ NAF      E+ +A   A  D +V  +++TG G  
Sbjct: 2   YETIRYE--VKGQVAWLTLNRPDQLNAFTEQMNAEVTKALKQAGADPNVRCVVITGAG-R 58
Query: 128 AFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVC 187
           AFC+G D +  T +   D+ +  R     +   +  L KPV+A V G A G G  L + C
Sbjct: 59  AFCAGEDLSGVTEE--MDHGDVLRSRYAPMMKALHHLEKPVVAAVNGAAAGAGMSLALAC 116
Query: 188 DLTIAADNAIFGQTGPKVGSF-DAGY 212
           D  + ++ A F      VG   DAG+
Sbjct: 117 DFRLLSEKASFAPAFIHVGLVPDAGH 142

>pdb|4FZW|C Chain C, Crystal Structure Of The Paaf-paag Hydratase-isomerase Complex From E.coli Length = 274

Iteration: 1
 Score = 53.1 bits (126), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 46/147 (31%), Positives = 68/147 (46%), Gaps = 4/147 (2%)
Query: 77  VGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQA 136
           V +G+  +T+NRP+R N+F      +L         D ++  ++LTG G   FC+G D  
Sbjct: 21  VEKGVMTLTLNRPERLNSFNDEMHAQLAECLKQVERDDTIRCLLLTGAG-RGFCAGQDLN 79
Query: 137 LRTRDGYADYENFGRLNVLDLQVQIRRL---PKPVIAMVAGYAVGGGHVLHMVCDLTIAA 193
            R  D      + G          +RRL   PKPVI  V G A G G  L +  D+ IAA
Sbjct: 80  DRNVDPTGPAPDLGMSVERFYNPLVRRLAKLPKPVICAVNGVAAGAGATLALGGDIVIAA 139
Query: 194 DNAIFGQTGPKVGSFDAGYGSSIMSRL 220
            +A F     K+G      G+ ++ R+
Sbjct: 140 RSAKFVMAFSKLGLIPDCGGTWLLPRV 166

>pdb|1DCI|A Chain A, Dienoyl-Coa Isomerase Length = 275

Iteration: 1
 Score = 53.1 bits (126), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 41/151 (27%), Positives = 63/151 (41%), Gaps = 32/151 (21%)
Query: 84  ITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSG----------- 132
           + +NRP++RNA      +EL+  F     DS    ++++G G + F SG           
Sbjct: 17  VQLNRPEKRNAMNRAFWRELVECFQKISKDSDCRAVVVSGAG-KMFTSGIDLMDMASDIL 75
Query: 133 ---GDQALRT----RDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHM 185
              GD   R     RD  + Y+    +        I + PKPVIA + G  +GGG  L  
Sbjct: 76  QPPGDDVARIAWYLRDLISRYQKTFTV--------IEKCPKPVIAAIHGGCIGGGVDLIS 127
Query: 186 VCDLTIAADNAIFGQTGPKVGSFDAGYGSSI 216
            CD+     +A F     +V   D G  + +
Sbjct: 128 ACDIRYCTQDAFF-----QVKEVDVGLAADV 153

>pdb|3R9Q|A Chain A, Structure Of A Probable Enoyl-Coa HydrataseISOMERASE FROM Mycobacterium Abscessus Atcc 19977 DSM 44196 Length = 262

Iteration: 1
 Score = 52.8 bits (125), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 40/120 (33%), Positives = 59/120 (49%), Gaps = 6/120 (5%)
Query: 81  IAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTG-KGTEAFCSGGDQALRT 139
           +  + +NRP  RNA    T   L+ AF +   D    V +L G  GT  FC+G D     
Sbjct: 21  VTTVILNRPHARNAVDGPTAAALLAAFTEFDADPEASVAVLWGDNGT--FCAGADLKAMG 78
Query: 140 RDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFG 199
            D   +    G   +   ++   RL KPVIA ++G+AV GG  L + CDL +  ++A+ G
Sbjct: 79  TDRGNELHPHGPGPMGPSRL---RLSKPVIAAISGHAVAGGIELALWCDLRVVEEDAVLG 135

>pdb|3BPT|A Chain A, Crystal Structure Of Human Beta-Hydroxyisobutyryl-Coa Hydrolase In Complex With Quercetin Length = 363

Iteration: 1
 Score = 52.4 bits (124), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 38/142 (26%), Positives = 61/142 (42%), Gaps = 8/142 (5%)
Query: 84  ITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGD-----QALR 138
           IT+NRP   NA   + ++++         D    +II+ G G +AFC+GGD     +A +
Sbjct: 19  ITLNRPKFLNALTLNXIRQIYPQLKKWEQDPETFLIIIKGAGGKAFCAGGDIRVISEAEK 78
Query: 139 TRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIF 198
            +   A    F R     L   +    KP +A++ G   GGG  L +     +A +  +F
Sbjct: 79  AKQKIAPV--FFR-EEYXLNNAVGSCQKPYVALIHGITXGGGVGLSVHGQFRVATEKCLF 135
Query: 199 GQTGPKVGSFDAGYGSSIMSRL 220
                 +G F    G   + RL
Sbjct: 136 AXPETAIGLFPDVGGGYFLPRL 157

>pdb|3LKE|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase From Bacillus Halodurans Length = 263

Iteration: 1
 Score = 51.2 bits (121), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 44/146 (30%), Positives = 69/146 (47%), Gaps = 5/146 (3%)
Query: 84  ITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGG--DQALRTRD 141
           IT++ P+++N         L+ A     +++S+  IIL  K    F SG   +  L    
Sbjct: 17  ITLDYPEKKNGLDAELGTSLLEAIRAGNNETSIHSIILQSKHRAYFSSGPRLEDLLICAS 76
Query: 142 GYADYENFGRLNVLDLQV-QIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQ 200
             +D      L+VL+  V +I   PK  +A++ GYA GGG  + + CD  IA   A F +
Sbjct: 77  DQSDVRLREVLHVLNHCVLEIFTSPKVTVALINGYAYGGGFNMMLACDRRIALRRAKFLE 136
Query: 201 TGPKVG-SFDAGYGSSIMSRLVSTVQ 225
              K+G S D G  S  + R++   Q
Sbjct: 137 NFHKMGISPDLG-ASYFLPRIIGYEQ 161

>pdb|3SWX|A Chain A, Crystal Structure Of A Probable Enoyl-Coa HydrataseISOMERASE FROM Mycobacterium Abscessus Length = 265

Iteration: 1
 Score = 51.2 bits (121), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 39/119 (32%), Positives = 58/119 (48%), Gaps = 5/119 (4%)
Query: 84  ITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRD-- 141
           I +NRP +RNAF    ++EL  A  +   D+ +   +L G+G   F +G D A    +  
Sbjct: 22  IGLNRPAKRNAFDKTMLEELALALGEYETDTDLRAAVLYGEGP-LFTAGLDLASVAAEIQ 80
Query: 142 GYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQ 200
           G A     G +N    QV  R+L KP++  V G  +  G  L +  D+ IA + A F Q
Sbjct: 81  GGASLTPEGGIN--PWQVDGRQLSKPLLVAVHGKVLTLGIELALAADIVIADETATFAQ 137

>pdb|2Q35|A Chain A, Crystal Structure Of The Y82f Variant Of Ech2 Decarboxylase Domain Of Curf From Lyngbya Majuscula Length = 243

Iteration: 1
 Score = 50.4 bits (119), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 44/155 (28%), Positives = 71/155 (45%), Gaps = 8/155 (5%)
Query: 77  VGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQA 136
           +G G+ +IT+     RN F P  V+ L   F+    +    V+ILTG G   F SG  + 
Sbjct: 9   LGNGVVQITMKDESSRNGFSPSIVEGLRHCFSVVAQNQQYKVVILTGYGN-YFSSGASKE 67
Query: 137 LRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNA 196
              R      +  G + VLDL   I     P+IA + G++ GGG +L +  D  + +  +
Sbjct: 68  FLIR------KTRGEVEVLDLSGLILDCEIPIIAAMQGHSFGGGLLLGLYADFVVFSQES 121
Query: 197 IFGQTGPKVGSFDAGYGSSIM-SRLVSTVQQCLWW 230
           ++     K G    G  S I+  +L S + Q + +
Sbjct: 122 VYATNFMKYGFTPVGATSLILREKLGSELAQEMIY 156

>pdb|2FBM|A Chain A, Acetyltransferase Domain Of Cdy1 Length = 291

Iteration: 1
 Score = 50.4 bits (119), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 39/140 (27%), Positives = 68/140 (48%), Gaps = 14/140 (10%)
Query: 66  TEFTDIIYEKAVGEGIAKITIN-RPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGK 124
           + + DI+ +K   +G  +I ++ R   +NA     +KE++ A N A  D S  +++ +  
Sbjct: 20  STYRDIVVKKE--DGFTQIVLSTRSTEKNALNTEVIKEIVNALNSAAADDS-KLVLFSAA 76
Query: 125 GTEAFCSGGD-----QALRTRDGYADYENFGRL-NVLDLQVQIRRLPKPVIAMVAGYAVG 178
           G+  FC G D     + LR     A  E    + N ++  +Q +   KP++  V G A+G
Sbjct: 77  GS-VFCCGLDFGYFVKHLRNNRNTASLEMVDTIKNFVNTFIQFK---KPIVVSVNGPAIG 132
Query: 179 GGHVLHMVCDLTIAADNAIF 198
            G  +  +CDL  A + A F
Sbjct: 133 LGASILPLCDLVWANEKAWF 152

>pdb|3FDU|A Chain A, Crystal Structure Of A Putative Enoyl-Coa HydrataseISOMERASE FROM Acinetobacter Baumannii Length = 266

Iteration: 1
 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 38/143 (26%), Positives = 66/143 (46%), Gaps = 6/143 (4%)
Query: 80  GIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRT 139
           G+  + INRP+ +NA        + +A ++A  +  V V++L G     F +G D  ++ 
Sbjct: 14  GVLTLAINRPEAKNALYGELYLWIAKALDEADQNKDVRVVVLRG-AEHDFTAGND--MKD 70
Query: 140 RDGYADYENFGRLNVLDLQVQIR---RLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNA 196
             G+    N G    +   V ++   RL KP+I  V G A+G G  + +  DL  A + A
Sbjct: 71  FMGFVQNPNAGPAGQVPPFVLLKSAARLSKPLIIAVKGVAIGIGVTILLQADLVFADNTA 130
Query: 197 IFGQTGPKVGSFDAGYGSSIMSR 219
           +F      +G    G  S ++ +
Sbjct: 131 LFQIPFVSLGLSPEGGASQLLVK 153

>pdb|2A7K|A Chain A, Carboxymethylproline Synthase (carb) From Pectobacterium Carotovora, Apo Enzyme Length = 250

Iteration: 1
 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/162 (26%), Positives = 76/162 (46%), Gaps = 6/162 (3%)
Query: 71  IIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFC 130
           +++E+   E +  IT++ P++ N F       +  A   A  D SV  +++ G    +F 
Sbjct: 1   MVFEENSDE-VRVITLDHPNKHNPFSRTLETSVKDALARANADDSVRAVVVYGGAERSFS 59
Query: 131 SGGD-QALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDL 189
           +GGD   ++      D E +    V+DL   +  + KP IA V GYA+G G    ++ D 
Sbjct: 60  AGGDFNEVKQLSRSEDIEEWID-RVIDLYQAVLNVNKPTIAAVDGYAIGMGFQFALMFDQ 118
Query: 190 TIAADNAIFGQTGPKVGSFDAGYGSSIM--SRLVSTVQQCLW 229
            + A  A F     K G      G++I+  +   ST+Q+ ++
Sbjct: 119 RLMASTANFVMPELKHG-IGCSVGAAILGFTHGFSTMQEIIY 159

>pdb|4J2U|A Chain A, Crystal Structure Of An Enoyl-coa Hydratase From Rhodobacter Sphaeroides 2.4.1 Length = 365

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/116 (30%), Positives = 59/116 (50%), Gaps = 7/116 (6%)
Query: 69  TDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEA 128
           +D++  K    G  +IT++RP   NA     V+E+  A      D  V ++++  +G  A
Sbjct: 24  SDVLIRKVRRAG--RITLSRPAALNALTCAXVQEIDAALRGWIGDPEVELVVIDAEGPRA 81
Query: 129 FCSGGDQA-LRTRDGYADY---ENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGG 180
           FC+GGD A L  R    D+   ++F R+       +I   PKP++++  G+  GGG
Sbjct: 82  FCAGGDIAELHGRGVAGDHAFGQDFWRVEY-RXNDRIAAFPKPIVSLXQGFTXGGG 136

>pdb|2FW2|A Chain A, Catalytic Domain Of Cdy Length = 260

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 39/138 (28%), Positives = 67/138 (48%), Gaps = 14/138 (10%)
Query: 68  FTDIIYEKAVGEGIAKITIN-RPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGT 126
           + DI+ +K   +G  +I ++ R   +NA     +KE++ A N A  D S  +++ +  G+
Sbjct: 3   YRDIVVKKE--DGFTQIVLSTRSTEKNALNTEVIKEMVNALNSAAADDS-KLVLFSAAGS 59
Query: 127 EAFCSGGD-----QALRTRDGYADYENFGRL-NVLDLQVQIRRLPKPVIAMVAGYAVGGG 180
             FC G D     + LR     A  E    + N ++  +Q +   KP++  V G A+G G
Sbjct: 60  -VFCCGLDFGYFVRHLRNDRNTASLEMVDTIKNFVNTFIQFK---KPIVVSVNGPAIGLG 115
Query: 181 HVLHMVCDLTIAADNAIF 198
             +  +CDL  A + A F
Sbjct: 116 ASILPLCDLVWANEKAWF 133

>pdb|1EF8|A Chain A, Crystal Structure Of Methylmalonyl Coa Decarboxylase Length = 261

Iteration: 1
 Score = 48.9 bits (115), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 48/175 (27%), Positives = 78/175 (44%), Gaps = 26/175 (14%)
Query: 81  IAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGD-QALRT 139
           +A I  N   + NA     + +L++A +D        +I+    G++ F +G D   L +
Sbjct: 14  VAVIEFNYGRKLNALSKVFIDDLMQALSDLNRPEIRCIILRAPSGSKVFSAGHDIHELPS 73
Query: 140 --RDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAI 197
             RD  + Y++  R     +   I++ PKP+I+MV G   GG   + M  DL IAA  + 
Sbjct: 74  GGRDPLS-YDDPLR----QITRMIQKFPKPIISMVEGSVWGGAFEMIMSSDLIIAASTST 128
Query: 198 FGQTGPKVG-----------SFDAGYGSSIMSRLVS-----TVQQCLWWGLKKHV 236
           F  T   +G           + DAG+   I+  L+      T Q+ L  G+  HV
Sbjct: 129 FSMTPVNLGVPYNLVGIHNLTRDAGF--HIVKELIFTASPITAQRALAVGILNHV 181

>pdb|3QK8|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase Echa15 From Mycobacterium Marinum In Complex With An Unknown Ligand Length = 272

Iteration: 1
 Score = 48.5 bits (114), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 40/135 (29%), Positives = 72/135 (53%), Gaps = 12/135 (8%)
Query: 67  EFTDIIYEKAVGE-GIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKG 125
           +F  + +E   GE G+  + ++ P   N+  P   ++L   +     D  V V+++ G+G
Sbjct: 11  DFPSLRFEP--GEHGVLNLVLDSPGL-NSVGPQMHRDLADVWPVIDRDPDVRVVLVRGEG 67
Query: 126 TEAFCSGGDQALRTRDGYADYENFGRLNVL----DLQVQIRRLPKPVIAMVAGYAVGGGH 181
            +AF SGG   L   +   DYE  GR+ ++    DL + +  L KPV++ + G AVG G 
Sbjct: 68  -KAFSSGGSFEL-IDETIGDYE--GRIRIMREARDLVLNLVNLDKPVVSAIRGPAVGAGL 123
Query: 182 VLHMVCDLTIAADNA 196
           V+ ++ D+++A+  A
Sbjct: 124 VVALLADISVASATA 138

>pdb|2Q2X|A Chain A, Crystal Structure Of The Ech2 Decarboxylase Domain Of Curf From Lyngbya Majuscula Length = 243

Iteration: 1
 Score = 48.1 bits (113), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 43/157 (27%), Positives = 69/157 (43%), Gaps = 9/157 (5%)
Query: 77  VGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQA 136
           +G G+ +IT      RN F P  V+ L   F+    +    V+ILTG G   F SG  + 
Sbjct: 9   LGNGVVQITXKDESSRNGFSPSIVEGLRHCFSVVAQNQQYKVVILTGYGN-YFSSGASKE 67
Query: 137 LRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNA 196
              R      +  G + VLDL   I     P+IA   G++ GGG +L +  D  + +  +
Sbjct: 68  YLIR------KTRGEVEVLDLSGLILDCEIPIIAAXQGHSFGGGLLLGLYADFVVFSQES 121
Query: 197 IFGQTGPKVGSFDAGYGSSIMSRLVST--VQQCLWWG 231
           ++     K G    G  S I+   + +   Q+ ++ G
Sbjct: 122 VYATNFXKYGFTPVGATSLILREKLGSELAQEXIYTG 158

>pdb|3L3S|A Chain A, Crystal Structure Of An Enoyl-Coa HydrotaseISOMERASE FAMILY Protein From Silicibacter Pomeroyi Length = 263

Iteration: 1
 Score = 47.8 bits (112), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 43/146 (29%), Positives = 62/146 (42%), Gaps = 11/146 (7%)
Query: 70  DIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAF 129
           D +  + + EG+  +T+ R       R   +  L  A   A  D  V V+++ G G   F
Sbjct: 6   DGLLGEVLSEGVLTLTLGRAPAHPLSRA-XIAALHDALRRAXGDDHVHVLVIHGPG-RIF 63
Query: 130 CSGGDQALRTRDGYADYENFGRLNVLDL-------QVQIRRLPKPVIAMVAGYAVGGGHV 182
           C+G D  L+    +    + GR  V DL        + +   PKP IA+V G A   G  
Sbjct: 64  CAGHD--LKEIGRHRADPDEGRAFVTDLFEACSALXLDLAHCPKPTIALVEGIATAAGLQ 121
Query: 183 LHMVCDLTIAADNAIFGQTGPKVGSF 208
           L   CDL  A+  A F   G + G F
Sbjct: 122 LXAACDLAYASPAARFCLPGVQNGGF 147

>pdb|3NJB|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase From Mycobacterium Smegmatis, Iodide Soak Length = 333

Iteration: 1
 Score = 47.4 bits (111), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 56/204 (27%), Positives = 77/204 (37%), Gaps = 47/204 (23%)
Query: 71  IIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFC 130
           + YE  V + +A+IT NRP++ NA    T  EL      A  D  V VI+++G+G E FC
Sbjct: 37  MTYE--VTDRVARITFNRPEKGNAIVADTPLELSALVERADLDPDVHVILVSGRG-EGFC 93
Query: 131 SGGD--------------------------QAL-----RTRDGYADYENFGRLNVLDLQV 159
           +G D                          QAL        D   DY+   R   +    
Sbjct: 94  AGFDLSAYAEGSSSAGGGSPYEGTVLSGKTQALNHLPDEPWDPMVDYQMMSRF--VRGFA 151
Query: 160 QIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTG------PKVGSFDAGYG 213
            +    KP +  + GY V GG  + +  D  IAA +A  G         P  G +    G
Sbjct: 152 SLMHCDKPTVVKIHGYCVAGGTDIALHADQVIAAADAKIGYPPMRVWGVPAAGLWAHRLG 211
Query: 214 SSIMSRLVSTVQ-----QCLWWGL 232
                RL+ T       Q   WGL
Sbjct: 212 DQRAKRLLFTGDCITGAQAAEWGL 235

>pdb|3RRV|A Chain A, Crystal Structure Of An Enoyl-Coa HydrataseISOMERASE FROM Mycobacterium Paratuberculosis Length = 276

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/131 (31%), Positives = 59/131 (45%), Gaps = 2/131 (1%)
Query: 84  ITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQA-LRTRDG 142
           IT+NRPD  N+        L R +    DD +    ++TG G  AF +GGD   L+    
Sbjct: 41  ITLNRPDSLNSVNDDLHVGLARLWQRLTDDPTARAAVITGAG-RAFSAGGDFGYLKELSA 99
Query: 143 YADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTG 202
            AD       +  ++ + + R   PV+A V G AVG G  L  + D+   A+NA      
Sbjct: 100 DADLRAKTIRDGREIVLGMARCRIPVVAAVNGPAVGLGCSLVALSDIVYIAENAYLADPH 159
Query: 203 PKVGSFDAGYG 213
            +VG   A  G
Sbjct: 160 VQVGLVAADGG 170

>pdb|1HZD|A Chain A, Crystal Structure Of Human Auh Protein, An Rna-Binding Homologue Of Enoyl-Coa Hydratase Length = 272

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/142 (28%), Positives = 67/142 (47%), Gaps = 1/142 (0%)
Query: 80  GIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRT 139
           GI  + INR   +N+   + +K L +A +  + D  V  II+  +    FC+G D   R 
Sbjct: 21  GIVVLGINRAYGKNSLSKNLIKMLSKAVDALKSDKKVRTIIIRSEVPGIFCAGADLKERA 80
Query: 140 RDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFG 199
           +   ++   F    +  +   I  LP P IA + G A+GGG  L + CD+ +AA +A  G
Sbjct: 81  KMSSSEVGPFVS-KIRAVINDIANLPVPTIAAIDGLALGGGLELALACDIRVAASSAKMG 139
Query: 200 QTGPKVGSFDAGYGSSIMSRLV 221
               K+     G G+  + R +
Sbjct: 140 LVETKLAIIPGGGGTQRLPRAI 161

>pdb|1WDK|A Chain A, Fatty Acid Beta-Oxidation Multienzyme Complex From Pseudomonas Fragi, Form I (Native2) Length = 715

Iteration: 1
 Score = 45.1 bits (105), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 47/170 (27%), Positives = 78/170 (45%), Gaps = 14/170 (8%)
Query: 71  IIYE------KAVGEGIAKITIN-RPDRRNAFRPHTVKELIRAFNDARDDSSV-GVIILT 122
           +IYE       A+  GI ++  + + +  N F   T+ EL +A +  + D+SV GVI+ +
Sbjct: 1   MIYEGKAITVTALESGIVELKFDLKGESVNKFNRLTLNELRQAVDAIKADASVKGVIVSS 60
Query: 123 GKGTEAFCSGGDQALRTRD-GYADYENF-GRLNVLDLQVQIRRLPKPVIAMVAGYAVGGG 180
           GK  + F  G D      +    D E   G L    +      L  P +A + G A+GGG
Sbjct: 61  GK--DVFIVGADITEFVENFKLPDAELIAGNLEANKIFSDFEDLNVPTVAAINGIALGGG 118
Query: 181 HVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSI-MSRLVSTVQQCLW 229
             + +  D  + AD+A  G    K+G +  G+G ++ + RL+       W
Sbjct: 119 LEMCLAADFRVMADSAKIGLPEVKLGIY-PGFGGTVRLPRLIGVDNAVEW 167

>pdb|2PPY|A Chain A, Crystal Structure Of Enoyl-Coa Hydrates (Gk_1992) From Geobacillus Kaustophilus Hta426 Length = 265

Iteration: 1
 Score = 44.7 bits (104), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 45/148 (30%), Positives = 72/148 (48%), Gaps = 11/148 (7%)
Query: 79  EGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGD-QAL 137
           +GIA+I ++  ++ N++     KE   A +D R D  + V+I+     + F +G D   L
Sbjct: 17  DGIAEIHLH-INKSNSYDLEFYKEFNAAIDDIRFDPDIKVVIVXSDVPKFFSAGADINFL 75
Query: 138 RTRDGYADYENFGRLN-VLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNA 196
           R+ D     +     N  LD   +I R P+  IA + G+ VGGG    + CDL    D A
Sbjct: 76  RSADPRFKTQFCLFCNETLD---KIARSPQVYIACLEGHTVGGGLEXALACDLRFXGDEA 132
Query: 197 IFGQTG-PKV--GSFDAGYGSSIMSRLV 221
             G+ G P+V  G      G+  ++RL+
Sbjct: 133 --GKIGLPEVSLGVLAGTGGTQRLARLI 158

>pdb|4HDT|A Chain A, Crystal Structure Of A Carnitinyl-Coa Dehydratase From Mycobacterium Thermoresistibile Length = 353

Iteration: 1
 Score = 44.3 bits (103), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 27/95 (28%), Positives = 41/95 (43%), Gaps = 2/95 (2%)
Query: 80  GIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRT 139
           G+  +T+NRP   N+     V  +        +D SV  ++LTG G    C+GGD     
Sbjct: 18  GVGLLTLNRPKAINSLTHGMVTTMAERLAAWENDDSVRAVLLTGAGERGLCAGGDVVAIY 77
Query: 140 RDGYADYENFGR--LNVLDLQVQIRRLPKPVIAMV 172
               AD     R   +   L   I R PKP ++++
Sbjct: 78  HSAKADGAEARRFWFDEYRLNAHIGRYPKPYVSIM 112

>pdb|2PG8|A Chain A, Crystal Structure Of R254k Mutanat Of Dpgc With Bound Substrate Analog Length = 417

Iteration: 1
 Score = 43.9 bits (102), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 40/151 (26%), Positives = 67/151 (44%), Gaps = 23/151 (15%)
Query: 79  EGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTG--------KGTEAFC 130
           +G+A++T+ R DR NA     V ++  A + A  D  V V +L G        +G   F 
Sbjct: 164 DGVARLTMCRDDRLNAEDGQQVDDMETAVDLALLDPGVRVGLLRGGVMSHPRYRGKRVFS 223
Query: 131 SGGDQALRTRDGYADYENFGRLNVLDLQVQIR---------------RLPKPVIAMVAGY 175
           +G +    ++ G +  +   R  +  +   +R               R+ KP +A V G+
Sbjct: 224 AGINLKYLSQGGISLVDFLMRKELGYIHKLVRGVLTNDDRPGWWHSPRIEKPWVAAVDGF 283
Query: 176 AVGGGHVLHMVCDLTIAADNAIFGQTGPKVG 206
           A+GGG  L +V D  +A+ +A F     K G
Sbjct: 284 AIGGGAQLLLVFDRVLASSDAYFSLPAAKEG 314

>pdb|2NP9|A Chain A, Crystal Structure Of A Dioxygenase In The Crotonase Superfamily Length = 440

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 40/151 (26%), Positives = 67/151 (44%), Gaps = 23/151 (15%)
Query: 79  EGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTG--------KGTEAFC 130
           +G+A++T+ R DR NA     V ++  A + A  D  V V +L G        +G   F 
Sbjct: 175 DGVARLTMCRDDRLNAEDGQQVDDMETAVDLALLDPGVRVGLLRGGVMSHPRYRGKRVFS 234
Query: 131 SGGDQALRTRDGYADYENFGRLNVLDLQVQIR---------------RLPKPVIAMVAGY 175
           +G +    ++ G +  +   R  +  +   +R               R+ KP +A V G+
Sbjct: 235 AGINLKYLSQGGISLVDFLMRRELGYIHKLVRGVLTNDDRPGWWHSPRIEKPWVAAVDGF 294
Query: 176 AVGGGHVLHMVCDLTIAADNAIFGQTGPKVG 206
           A+GGG  L +V D  +A+ +A F     K G
Sbjct: 295 AIGGGAQLLLVFDRVLASSDAYFSLPAAKEG 325

>pdb|3HIN|A Chain A, Crystal Structure Of Putative Enoyl-Coa Hydratase From Rhodopseudomonas Palustris Cga009 Length = 275

Iteration: 1
 Score = 41.2 bits (95), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 43/145 (29%), Positives = 67/145 (46%), Gaps = 12/145 (8%)
Query: 81  IAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQA-LRT 139
           +  I +NRP +RNA     +  L     D  D   +  +++ G G + F +G D + LR 
Sbjct: 26  VLTIGLNRPKKRNALNDGLMAALKDCLTDIPDQ--IRAVVIHGIG-DHFSAGLDLSELRE 82
Query: 140 RD---GYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNA 196
           RD   G    + + R  V D ++Q  R+P  VIA + G  +GGG  L     + +A  +A
Sbjct: 83  RDATEGLVHSQTWHR--VFD-KIQYCRVP--VIAALKGAVIGGGLELACAAHIRVAEASA 137
Query: 197 IFGQTGPKVGSFDAGYGSSIMSRLV 221
            +       G F  G GS  + RL+
Sbjct: 138 YYALPEGSRGIFVGGGGSVRLPRLI 162

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	240
2uzf_A	273	Naphthoate synthase; lyase, menaquinone biosynthes	8e-92
3t89_A	289	1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase	5e-91
4eml_A	275	Naphthoate synthase; 1,4-dihydroxy-2-naphthoyl-coe	1e-90
3t8b_A	334	1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase	9e-84
3t3w_A	279	Probable enoyl-COA hydratase; ssgcid, structural g	2e-72
2j5i_A	276	P-hydroxycinnamoyl COA hydratase/lyase; vanillin,	9e-66
3njd_A	333	Enoyl-COA hydratase; ssgcid, mycobacerium smegmati	4e-45
3i47_A	268	Enoyl COA hydratase/isomerase (crotonase); structu	9e-45
2a7k_A	250	CARB; crotonase, antibiotic, beta-lactam, biosynth	1e-44
3myb_A	286	Enoyl-COA hydratase; ssgcid, struct genomics, seat	5e-44
3qmj_A	256	Enoyl-COA hydratase, ECHA8_6; ssgcid, NIH, niaid,	6e-44
3lke_A	263	Enoyl-COA hydratase; nysgrc, target 11251J, struct	8e-44
2ej5_A	257	Enoyl-COA hydratase subunit II; structural genomic	4e-43
3sll_A	290	Probable enoyl-COA hydratase/isomerase; structural	5e-43
1uiy_A	253	Enoyl-COA hydratase; lyase, beta-oxidation, croton	7e-43
3r9t_A	267	ECHA1_1; ssgcid, seattle structural genomics cente	1e-42
1nzy_A	269	Dehalogenase, 4-chlorobenzoyl coenzyme A dehalogen	1e-42
3hp0_A	267	Putative polyketide biosynthesis enoyl-COA hydrata	1e-42
3kqf_A	265	Enoyl-COA hydratase/isomerase family protein; IDP0	2e-42
3g64_A	279	Putative enoyl-COA hydratase; alpha-beta structure	2e-42
3rrv_A	276	Enoyl-COA hydratase/isomerase; structural genomics	3e-42
3swx_A	265	Probable enoyl-COA hydratase/isomerase; structural	3e-42
3gow_A	254	PAAG, probable enoyl-COA hydratase; the spiral fol	4e-42
2q35_A	243	CURF; crotonase, lyase; 1.65A {Lyngbya majuscula}	4e-42
3p5m_A	255	Enoyl-COA hydratase/isomerase; seattle structural	5e-42
3qk8_A	272	Enoyl-COA hydratase ECHA15; ssgcid, NIH, niaid, SB	5e-42
2vx2_A	287	Enoyl-COA hydratase domain-containing protein 3; i	6e-42
3qxz_A	265	Enoyl-COA hydratase/isomerase; structural genomics	6e-42
3isa_A	254	Putative enoyl-COA hydratase/isomerase; structural	9e-42
3fdu_A	266	Putative enoyl-COA hydratase/isomerase; structural	1e-41
1szo_A	257	6-oxocamphor hydrolase; enzyme-product complex; HE	2e-41
2j5g_A	263	ALR4455 protein; enzyme evolution, C-C bond hydrol	4e-41
3qre_A	298	Enoyl-COA hydratase, ECHA12_1; structural genomics	4e-41
3tlf_A	274	Enoyl-COA hydratase/isomerase; structural genomics	5e-41
3l3s_A	263	Enoyl-COA hydratase/isomerase family protein; crot	6e-41
3he2_A	264	Enoyl-COA hydratase ECHA6; fatty acid metabolism,	9e-41
4f47_A	278	Enoyl-COA hydratase ECHA19; ssgcid, seattle struct	1e-40
3rsi_A	265	Putative enoyl-COA hydratase/isomerase; structural	1e-40
3pe8_A	256	Enoyl-COA hydratase; emerald biostructures, struct	1e-40
2pbp_A	258	Enoyl-COA hydratase subunit I; B-oxidation, struct	2e-40
3qxi_A	265	Enoyl-COA hydratase ECHA1; structural genomics, se	3e-40
1wz8_A	264	Enoyl-COA hydratase; lyase, crotonase, hexamer, st	3e-40
3lao_A	258	Enoyl-COA hydratase/isomerase; alpha-beta sandwich	3e-40
1hzd_A	272	AUH, AU-binding protein/enoyl-COA hydratase; RNA-b	5e-40
3oc7_A	267	Enoyl-COA hydratase; seattle structural genomics c	2e-39
3moy_A	263	Probable enoyl-COA hydratase; ssgcid, seattle stru	2e-39
2gtr_A	261	CDY-like, chromodomain Y-like protein; structural	1e-38
2f6q_A	280	Peroxisomal 3,2-trans-enoyl-COA isomerase; peroxis	1e-38
1mj3_A	260	Enoyl-COA hydratase, mitochondrial; homohexamer, l	3e-38
3r9q_A	262	Enoyl-COA hydratase/isomerase; ssgcid, lyase,isome	4e-38
3hin_A	275	Putative 3-hydroxybutyryl-COA dehydratase; structu	4e-38
3gkb_A	287	Putative enoyl-COA hydratase; structural genomics,	7e-38
3trr_A	256	Probable enoyl-COA hydratase/isomerase; ssgcid, st	1e-37
3h81_A	278	Enoyl-COA hydratase ECHA8; niaid, decode, infectio	1e-37
2fbm_A	291	Y chromosome chromodomain protein 1, telomeric IS;	1e-37
1ef8_A	261	Methylmalonyl COA decarboxylase; lyase; 1.85A {Esc	5e-37
2ppy_A	265	Enoyl-COA hydratase; beta-oxidation, fatty acid me	6e-37
3pea_A	261	Enoyl-COA hydratase/isomerase family protein; stru	3e-36
3h0u_A	289	Putative enoyl-COA hydratase; structural genomics,	5e-36
1pjh_A	280	Enoyl-COA isomerase; ECI1P; beta-BETA-alpha spiral	2e-35
4di1_A	277	Enoyl-COA hydratase ECHA17; structural genomics, s	2e-35
2np9_A	440	DPGC; protein inhibitor complex, oxidoreductase; H	1e-34
1dci_A	275	Dienoyl-COA isomerase; lyase; 1.50A {Rattus norveg	5e-34
1sg4_A	260	3,2-trans-enoyl-COA isomerase, mitochondrial; crot	6e-34
3r6h_A	233	Enoyl-COA hydratase, ECHA3; ssgcid, mycobacerium m	3e-33
3m6n_A	305	RPFF protein; enoyl-COA hydratase, lyase; 1.80A {X	1e-29
3ot6_A	232	Enoyl-COA hydratase/isomerase family protein; stru	4e-29
2w3p_A	556	Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ri	1e-26
3bpt_A	363	3-hydroxyisobutyryl-COA hydrolase; coenzyme A, bet	1e-18
3ju1_A	407	Enoyl-COA hydratase/isomerase family protein; alph	4e-18
2wtb_A	725	MFP2, fatty acid multifunctional protein (ATMFP2);	9e-17
1wdk_A	715	Fatty oxidation complex alpha subunit; alpha2BETA2	2e-16
3zwc_A	742	Peroxisomal bifunctional enzyme; beta oxidation pa	5e-14

>2uzf_A Naphthoate synthase; lyase, menaquinone biosynthesis; HET: CAA; 2.9A {Staphylococcus aureus} Length = 273

 Score =  270 bits (692), Expect = 8e-92
 Identities = 106/159 (66%), Positives = 124/159 (77%), Gaps = 2/159 (1%)

Query: 63  ESGTEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILT 122
           E+  E+ +I YE    EGIAK+TINRP+ RNAF P TV E+I AF+ ARDD +V VI+LT
Sbjct: 7   ETLREYDEIKYEFY--EGIAKVTINRPEVRNAFTPKTVAEMIDAFSRARDDQNVSVIVLT 64

Query: 123 GKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHV 182
           G+G  AFCSGGDQ  R   GY   +   RLNVLDLQ  IR +PKPVIAMV GYAVGGG+V
Sbjct: 65  GEGDLAFCSGGDQKKRGHGGYVGEDQIPRLNVLDLQRLIRIIPKPVIAMVKGYAVGGGNV 124

Query: 183 LHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLV 221
           L++VCDLTIAADNAIFGQTGPKVGSFDAGYGS  ++R+V
Sbjct: 125 LNVVCDLTIAADNAIFGQTGPKVGSFDAGYGSGYLARIV 163

>3t89_A 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase superfamily, lyase; 1.95A {Escherichia coli} PDB: 3t88_A 3h02_A 2iex_A Length = 289

 Score =  268 bits (688), Expect = 5e-91
 Identities = 107/161 (66%), Positives = 124/161 (77%), Gaps = 2/161 (1%)

Query: 62  DESGTEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIIL 121
            +    F DI YEK+  +GIAKITINRP  RNAFRP TVKE+I+A  DAR D ++GVIIL
Sbjct: 20  HDCSEGFEDIRYEKS-TDGIAKITINRPQVRNAFRPLTVKEMIQALADARYDDNIGVIIL 78

Query: 122 TGKGTEAFCSGGDQALRTRDGYA-DYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGG 180
           TG G +AFCSGGDQ +R   G   D      LNVLD Q QIR  PKPV+AMVAGY++GGG
Sbjct: 79  TGAGDKAFCSGGDQKVRGDYGGYKDDSGVHHLNVLDFQRQIRTCPKPVVAMVAGYSIGGG 138

Query: 181 HVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLV 221
           HVLHM+CDLTIAADNAIFGQTGPKVGSFD G+G+S M+R+V
Sbjct: 139 HVLHMMCDLTIAADNAIFGQTGPKVGSFDGGWGASYMARIV 179

>4eml_A Naphthoate synthase; 1,4-dihydroxy-2-naphthoyl-coenzyme A, lyase; 2.04A {Synechocystis SP} Length = 275

 Score =  267 bits (685), Expect = 1e-90
 Identities = 104/164 (63%), Positives = 124/164 (75%), Gaps = 7/164 (4%)

Query: 63  ESGTEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILT 122
                + DI+Y KA   GIAKI INRP +RNAFRP TV EL  AF +AR+D+ +GV++LT
Sbjct: 4   HIAKHYDDILYYKA--GGIAKIVINRPHKRNAFRPQTVFELYDAFCNAREDNRIGVVLLT 61

Query: 123 GKGTE-----AFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAV 177
           G G       AFCSGGDQ++R   GY D +   RLNVLDLQ  IR +PK VIA+VAGYA+
Sbjct: 62  GAGPHSDGKYAFCSGGDQSVRGEGGYIDDQGTPRLNVLDLQRLIRSMPKVVIALVAGYAI 121

Query: 178 GGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLV 221
           GGGHVLH+VCDLTIAADNAIFGQTGPKVGSFD G+GSS ++R+V
Sbjct: 122 GGGHVLHLVCDLTIAADNAIFGQTGPKVGSFDGGFGSSYLARIV 165

>3t8b_A 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase superfamily, lyase; 1.65A {Mycobacterium tuberculosis} PDB: 3t8a_A 1rjm_A* 1rjn_A* 1q52_A 1q51_A Length = 334

 Score =  252 bits (644), Expect = 9e-84
 Identities = 89/222 (40%), Positives = 121/222 (54%), Gaps = 23/222 (10%)

Query: 17  NHLVPVISSDSNSGFIGLNNASMNDSYHRIHGEVPSHDVVWRIACDESGTEFTDIIYEKA 76
           +H   ++   S+     +  A           + P     WR+   +   + TDI Y + 
Sbjct: 9   HHSSGLVPRGSHM----VAPAGEQGRSSTALSDNPFDAKAWRLV--DGFDDLTDITYHRH 62

Query: 77  VGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKG------TEAFC 130
           V +   ++  NRP+ RNAFRPHTV EL R  + AR    VGV++LTG G        AFC
Sbjct: 63  VDDATVRVAFNRPEVRNAFRPHTVDELYRVLDHARMSPDVGVVLLTGNGPSPKDGGWAFC 122

Query: 131 SGGDQALRTRDGY----------ADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGG 180
           SGGDQ +R R GY           D    GRL++L++Q  IR +PK VI +V G+A GGG
Sbjct: 123 SGGDQRIRGRSGYQYASGDTADTVDVARAGRLHILEVQRLIRFMPKVVICLVNGWAAGGG 182

Query: 181 HVLHMVCDLTIAA-DNAIFGQTGPKVGSFDAGYGSSIMSRLV 221
           H LH+VCDLT+A+ + A F QT   VGSFD GYGS+ ++R V
Sbjct: 183 HSLHVVCDLTLASREYARFKQTDADVGSFDGGYGSAYLARQV 224

>3t3w_A Probable enoyl-COA hydratase; ssgcid, structural genomics, seattle ST genomics center for infectious disease, lyase; 1.80A {Mycobacterium thermoresistibile} PDB: 3ome_A Length = 279

 Score =  221 bits (565), Expect = 2e-72
 Identities = 50/169 (29%), Positives = 75/169 (44%), Gaps = 9/169 (5%)

Query: 57  WRIACDESGTEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSV 116
           WR            I Y+ +  + IA IT+NRP+  NA  P  + EL  A+  A +D+ V
Sbjct: 8   WRRPSRPEQRTEMYIDYDVS--DRIATITLNRPEAANAQNPELLDELDAAWTRAAEDNDV 65

Query: 117 GVIILTGKGTEAFCSGGD----QALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMV 172
            VI+L   G + F +G D      +  +              L+  ++ R +PKP IA V
Sbjct: 66  SVIVLRANG-KHFSAGHDLRGGGPVPDKLTLEFIYAHESRRYLEYSLRWRNVPKPSIAAV 124

Query: 173 AGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLV 221
            G  + GG +L   CDL IAA++A+F    P V     G      +  +
Sbjct: 125 QGRCISGGLLLCWPCDLIIAAEDALFSD--PVVLMDIGGVEYHGHTWEL 171

>2j5i_A P-hydroxycinnamoyl COA hydratase/lyase; vanillin, aldolase, crotonase, coenzyme-A; 1.8A {Pseudomonas fluorescens} PDB: 2j5i_B 2vss_A* 2j5i_I 2vss_F* 2vsu_A* 2vss_E* 2vsu_F* 2vsu_E* 2vsu_C* Length = 276

 Score =  204 bits (521), Expect = 9e-66
 Identities = 50/159 (31%), Positives = 69/159 (43%), Gaps = 7/159 (4%)

Query: 67  EFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGT 126
            +  +  E    +GIA + +NRP++RNA  P   +E+I        D + GV++LTG G 
Sbjct: 7   RWKTVKVEIE--DGIAFVILNRPEKRNAMSPTLNREMIDVLETLEQDPAAGVLVLTGAG- 63

Query: 127 EAFCSGGDQA----LRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHV 182
           EA+ +G D                E   R         +R   KP IAMV G+  GGG  
Sbjct: 64  EAWTAGMDLKEYFREVDAGPEILQEKIRREASQWQWKLLRMYAKPTIAMVNGWCFGGGFS 123

Query: 183 LHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLV 221
             + CDL I AD A FG +    G       S  M+  V
Sbjct: 124 PLVACDLAICADEATFGLSEINWGIPPGNLVSKAMADTV 162

>3njd_A Enoyl-COA hydratase; ssgcid, mycobacerium smegmatis, structu genomics, seattle structural genomics center for infectious lyase; 1.75A {Mycobacterium smegmatis} PDB: 3njb_A Length = 333

 Score =  153 bits (387), Expect = 4e-45
 Identities = 41/179 (22%), Positives = 62/179 (34%), Gaps = 33/179 (18%)

Query: 64  SGTEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTG 123
                  + YE    + +A+IT NRP++ NA    T  EL      A  D  V VI+++G
Sbjct: 30  DFDNLKTMTYEVT--DRVARITFNRPEKGNAIVADTPLELSALVERADLDPDVHVILVSG 87

Query: 124 KGTEAFCSGGDQALRTRDGYADYENFGRLN-----------------------------V 154
           +G E FC+G D +       +                                       
Sbjct: 88  RG-EGFCAGFDLSAYAEGSSSAGGGSPYEGTVLSGKTQALNHLPDEPWDPMVDYQMMSRF 146

Query: 155 LDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSF-DAGY 212
           +     +    KP +  + GY V GG  + +  D  IAA +A  G    +V     AG 
Sbjct: 147 VRGFASLMHCDKPTVVKIHGYCVAGGTDIALHADQVIAAADAKIGYPPMRVWGVPAAGL 205

>3i47_A Enoyl COA hydratase/isomerase (crotonase); structural genomics; 1.58A {Legionella pneumophila subsp} Length = 268

 Score =  149 bits (380), Expect = 9e-45
 Identities = 50/157 (31%), Positives = 81/157 (51%), Gaps = 6/157 (3%)

Query: 67  EFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGT 126
             +D++YE    + +  +T+NR  + NAF    + E+    + A +D++V VI+L   G 
Sbjct: 2   SLSDLLYEIQ--DKVGLLTMNRISKHNAFDNQLLTEMRIRLDSAINDTNVRVIVLKANG- 58

Query: 127 EAFCSGGD-QALRTRDGYADYENFGRLNVL-DLQVQIRRLPKPVIAMVAGYAVGGGHVLH 184
           + F +G D   +++   + + EN     VL +L   I + PKP IAMV G A GGG  L 
Sbjct: 59  KHFSAGADLTWMQSMANFTEEENLEDSLVLGNLMYSISQSPKPTIAMVQGAAFGGGAGLA 118

Query: 185 MVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLV 221
             CD+ IA+ +A F  +  K+G   A   S  + R +
Sbjct: 119 AACDIAIASTSARFCFSEVKLGLIPAV-ISPYVVRAI 154

>2a7k_A CARB; crotonase, antibiotic, beta-lactam, biosynthetic protein; 2.24A {Pectobacterium carotovorum} SCOP: c.14.1.3 PDB: 2a81_A* Length = 250

 Score =  149 bits (378), Expect = 1e-44
 Identities = 39/152 (25%), Positives = 66/152 (43%), Gaps = 5/152 (3%)

Query: 71  IIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFC 130
           +  E +  + +  IT++ P++ N F       +  A   A  D SV  +++ G    +F 
Sbjct: 2   VFEENS--DEVRVITLDHPNKHNPFSRTLETSVKDALARANADDSVRAVVVYGGAERSFS 59

Query: 131 SGGD-QALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDL 189
           +GGD   ++      D E +    V+DL   +  + KP IA V GYA+G G    ++ D 
Sbjct: 60  AGGDFNEVKQLSRSEDIEEWID-RVIDLYQAVLNVNKPTIAAVDGYAIGMGFQFALMFDQ 118

Query: 190 TIAADNAIFGQTGPKVGSFDAGYGSSIMSRLV 221
            + A  A F     K G      G++I+    
Sbjct: 119 RLMASTANFVMPELKHGIG-CSVGAAILGFTH 149

>3myb_A Enoyl-COA hydratase; ssgcid, struct genomics, seattle structural genomics center for infectious lyase; 1.55A {Mycobacterium smegmatis} Length = 286

 Score =  148 bits (376), Expect = 5e-44
 Identities = 51/161 (31%), Positives = 74/161 (45%), Gaps = 4/161 (2%)

Query: 63  ESGTEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILT 122
             G+    ++ +     G+  +T+NRP   NA     +  L  AF    +D SV  ++L 
Sbjct: 18  GPGSMSEPLLLQDRDERGVVTLTLNRPQAFNALSEAMLAALGEAFGTLAEDESVRAVVLA 77

Query: 123 GKGTEAFCSGGD-QALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGH 181
             G +AFC+G D + +R       YE        D+ + I+RLP PVIA V G A   G 
Sbjct: 78  ASG-KAFCAGHDLKEMRAEPSREYYEKLFAR-CTDVMLAIQRLPAPVIARVHGIATAAGC 135

Query: 182 VLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVS 222
            L  +CDL +A  +A F  +G  VG F        +SR V 
Sbjct: 136 QLVAMCDLAVATRDARFAVSGINVGLF-CSTPGVALSRNVG 175

>3qmj_A Enoyl-COA hydratase, ECHA8_6; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.20A {Mycobacterium marinum} Length = 256

 Score =  147 bits (374), Expect = 6e-44
 Identities = 41/156 (26%), Positives = 62/156 (39%), Gaps = 5/156 (3%)

Query: 67  EFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGT 126
               +  +      +  +T+NRP+  NAF         +A  DA DD  V V++LTG G 
Sbjct: 4   SMVTLQIDDD--NRVRTLTLNRPEALNAFNEALYDATAQALLDAADDPQVAVVLLTGSG- 60

Query: 127 EAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMV 186
             F +G D A           + G+     L   +   PKP+I  V G  VG G  +   
Sbjct: 61  RGFSAGTDLAEMQARITDPNFSEGKFGFRGLIKALAGFPKPLICAVNGLGVGIGATILGY 120

Query: 187 CDLTIAADNAIFGQTGPKVGSF-DAGYGSSIMSRLV 221
            DL   +  A        +G   +A   S ++ +LV
Sbjct: 121 ADLAFMSSTARLKCPFTSLGVAPEAA-SSYLLPQLV 155

>3lke_A Enoyl-COA hydratase; nysgrc, target 11251J, structural genomics, PSI-2, protein structure initiative; 1.70A {Bacillus halodurans} Length = 263

 Score =  147 bits (373), Expect = 8e-44
 Identities = 39/159 (24%), Positives = 65/159 (40%), Gaps = 7/159 (4%)

Query: 67  EFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGT 126
             + +  E         IT++ P+++N         L+ A     +++S+  IIL  K  
Sbjct: 2   SLSYVHTEIQ--NDALYITLDYPEKKNGLDAELGTSLLEAIRAGNNETSIHSIILQSKHR 59

Query: 127 EAFCSGGDQALRTRDGYADYENFGRLNVLDLQ---VQIRRLPKPVIAMVAGYAVGGGHVL 183
             F SG              +   R  +  L    ++I   PK  +A++ GYA GGG  +
Sbjct: 60  AYFSSGPRLEDLLICASDQSDVRLREVLHVLNHCVLEIFTSPKVTVALINGYAYGGGFNM 119

Query: 184 HMVCDLTIAADNAIFGQTGPKVGSF-DAGYGSSIMSRLV 221
            + CD  IA   A F +   K+G   D G  S  + R++
Sbjct: 120 MLACDRRIALRRAKFLENFHKMGISPDLG-ASYFLPRII 157

>2ej5_A Enoyl-COA hydratase subunit II; structural genomics, GK2038, NPPSFA, national project on prote structural and functional analyses; 2.00A {Geobacillus kaustophilus} Length = 257

 Score =  145 bits (368), Expect = 4e-43
 Identities = 51/155 (32%), Positives = 73/155 (47%), Gaps = 7/155 (4%)

Query: 68  FTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTE 127
           +  I YE      +A +T+NRPD+ NAF      E+ +A   A  D +V  +++TG G  
Sbjct: 2   YETIRYEVK--GQVAWLTLNRPDQLNAFTEQMNAEVTKALKQAGADPNVRCVVITGAG-R 58

Query: 128 AFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVC 187
           AFC+G D  L       D+ +  R     +   +  L KPV+A V G A G G  L + C
Sbjct: 59  AFCAGED--LSGVTEEMDHGDVLRSRYAPMMKALHHLEKPVVAAVNGAAAGAGMSLALAC 116

Query: 188 DLTIAADNAIFGQTGPKVGSF-DAGYGSSIMSRLV 221
           D  + ++ A F      VG   DAG     + RLV
Sbjct: 117 DFRLLSEKASFAPAFIHVGLVPDAG-HLYYLPRLV 150

>3sll_A Probable enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.35A {Mycobacterium abscessus} Length = 290

 Score =  146 bits (370), Expect = 5e-43
 Identities = 43/167 (25%), Positives = 79/167 (47%), Gaps = 11/167 (6%)

Query: 63  ESGTEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILT 122
           +     + ++ ++     IA +T+NRP+R NA     +    +   D   D+ V  +++T
Sbjct: 17  QGPGSMSFVLVDR-PRPEIALVTLNRPERMNAMAFDVMLPFKQMLVDISHDNDVRAVVIT 75

Query: 123 GKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQV------QIRRLPKPVIAMVAGYA 176
           G G   FCSG DQ       +        + +  +++       +RR+ +PVIA + G A
Sbjct: 76  GAGK-GFCSGADQKSAGPIPHIGGLTQPTIALRSMELLDEVILTLRRMHQPVIAAINGAA 134

Query: 177 VGGGHVLHMVCDLTIAADNAIFGQTGPKVG--SFDAGYGSSIMSRLV 221
           +GGG  L + CD+ +A+ +A F   G   G  + + G  S ++ R +
Sbjct: 135 IGGGLCLALACDVRVASQDAYFRAAGINNGLTASELG-LSYLLPRAI 180

>1uiy_A Enoyl-COA hydratase; lyase, beta-oxidation, crotonase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.85A {Thermus thermophilus} SCOP: c.14.1.3 Length = 253

 Score =  144 bits (366), Expect = 7e-43
 Identities = 49/153 (32%), Positives = 76/153 (49%), Gaps = 6/153 (3%)

Query: 71  IIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFC 130
           ++  +     +A + +N P+RRN   P     L++A +D   D  V  ++LTG+G +AF 
Sbjct: 1   MVQVEK--GHVAVVFLNDPERRNPLSPEMALSLLQALDDLEADPGVRAVVLTGRG-KAFS 57

Query: 131 SGGD-QALRTRDGYADYENFG-RLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCD 188
           +G D   L         EN+   L+++ L  ++   PKP +A V G AV GG  L + CD
Sbjct: 58  AGADLAFLERVTELGAEENYRHSLSLMRLFHRVYTYPKPTVAAVNGPAVAGGAGLALACD 117

Query: 189 LTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLV 221
           L +  + A  G T  K+G   A   S I+ R V
Sbjct: 118 LVVMDEEARLGYTEVKIGFVAAL-VSVILVRAV 149

>3r9t_A ECHA1_1; ssgcid, seattle structural genomics center for infectious DI enoyl-COA hydratase, lyase; 1.75A {Mycobacterium avium subsp} PDB: 3r9s_A 3r0o_A Length = 267

 Score =  144 bits (366), Expect = 1e-42
 Identities = 47/158 (29%), Positives = 68/158 (43%), Gaps = 7/158 (4%)

Query: 63  ESGTEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILT 122
            S T+    + E+     +  ITINRP+ RNA        +  A  +A+ D  V  ++LT
Sbjct: 3   GSMTDAPGALAERR--GNVMVITINRPEARNAINAAVSIGVGDALEEAQHDPEVRAVVLT 60

Query: 123 GKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHV 182
           G G ++FC+G D     R     + +               + KP IA V G A+GGG  
Sbjct: 61  GAGDKSFCAGADLKAIARRENLYHPDHPEWGFAGY--VRHFIDKPTIAAVNGTALGGGTE 118

Query: 183 LHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRL 220
           L +  DL +A + A FG    K G   A  G     R+
Sbjct: 119 LALASDLVVADERAQFGLPEVKRGLI-AAAGGVF--RI 153

>1nzy_A Dehalogenase, 4-chlorobenzoyl coenzyme A dehalogenase; lyase; HET: BCA; 1.80A {Pseudomonas SP} SCOP: c.14.1.3 PDB: 1jxz_A* 1nzy_B* Length = 269

 Score =  144 bits (365), Expect = 1e-42
 Identities = 48/159 (30%), Positives = 78/159 (49%), Gaps = 9/159 (5%)

Query: 68  FTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTE 127
           +  I +     +G+A+ITI  P  RNA     ++E+  A N A +D SVG +++TG   +
Sbjct: 2   YEAIGHRVE--DGVAEITIKLPRHRNALSVKAMQEVTDALNRAEEDDSVGAVMITGAE-D 58

Query: 128 AFCSGGD----QALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVL 183
           AFC+G         +   G  D+     L    +  +I R+ +PV+A + G A GGG  +
Sbjct: 59  AFCAGFYLREIPLDKGVAGVRDHFRIAALWWHQMIHKIIRVKRPVLAAINGVAAGGGLGI 118

Query: 184 HMVCDLTIAADNAIFGQTGPKVGSF-DAGYGSSIMSRLV 221
            +  D+ I AD+A F      +G   D    S  ++R+V
Sbjct: 119 SLASDMAICADSAKFVCAWHTIGIGNDTA-TSYSLARIV 156

>3hp0_A Putative polyketide biosynthesis enoyl-COA hydratase homolog PKSH; polyketide synthase, enoyl COA hydratase,isomerase; 2.32A {Bacillus subtilis} Length = 267

 Score =  144 bits (365), Expect = 1e-42
 Identities = 35/159 (22%), Positives = 61/159 (38%), Gaps = 9/159 (5%)

Query: 64  SGTEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTG 123
           S   +  I         +  IT +RP+  N      ++E ++  N     + V V++L G
Sbjct: 2   SLVTYQTIKVRFQ--ASVCYITFHRPEANNTINDTLIEECLQVLNQCETST-VTVVVLEG 58

Query: 124 KGTEAFCSGGD-QALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHV 182
              E FC G D Q +         +   +  + DL ++++  P   I+ V G    GG  
Sbjct: 59  LP-EVFCFGADFQEIYQEMKRGRKQASSQEPLYDLWMKLQTGPYVTISHVRGKVNAGGLG 117

Query: 183 LHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLV 221
                D+ IA   A F  +    G + A     ++  L+
Sbjct: 118 FVSATDIAIADQTASFSLSELLFGLYPAC----VLPFLI 152

>3kqf_A Enoyl-COA hydratase/isomerase family protein; IDP02329, structural genomic for structural genomics of infectious diseases, csgid; HET: MSE; 1.80A {Bacillus anthracis} Length = 265

 Score =  144 bits (365), Expect = 2e-42
 Identities = 41/136 (30%), Positives = 68/136 (50%), Gaps = 2/136 (1%)

Query: 66  TEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKG 125
            +  +I  + A    + KI++NR  + N+     ++EL        ++++  V+ILTG G
Sbjct: 5   LQLQNISVDYA-TPHVVKISLNRERQANSLSLALLEELQNILTQINEEANTRVVILTGAG 63

Query: 126 TEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHM 185
            +AFC+G D   R         +     +      + +LP+PVIA + G A+GGG  L +
Sbjct: 64  EKAFCAGADLKERAGMNEEQVRHAVS-MIRTTMEMVEQLPQPVIAAINGIALGGGTELSL 122

Query: 186 VCDLTIAADNAIFGQT 201
            CD  IAA++A  G T
Sbjct: 123 ACDFRIAAESASLGLT 138

>3g64_A Putative enoyl-COA hydratase; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; 2.05A {Streptomyces coelicolor A3} Length = 279

 Score =  144 bits (365), Expect = 2e-42
 Identities = 45/162 (27%), Positives = 71/162 (43%), Gaps = 13/162 (8%)

Query: 67  EFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGT 126
           E+  +  E    +G+A +T+ RPD+ NA       +L     +     +V  ++L G+G 
Sbjct: 15  EWRHLRVEIT--DGVATVTLARPDKLNALTFEAYADLRDLLAELSRRRAVRALVLAGEG- 71

Query: 127 EAFCSGGDQALRTRDGYADYENFGRLNVL-----DLQVQIRRLPKPVIAMVAGYAVGGGH 181
             FCSGGD  +    G     +  RL         +   +R  P PVIA + G A G G 
Sbjct: 72  RGFCSGGD--VDEIIGATLSMDTARLLDFNRMTGQVVRAVRECPFPVIAALHGVAAGAGA 129

Query: 182 VLHMVCDLTIAADNAIFGQTGPKVG--SFDAGYGSSIMSRLV 221
           VL +  D  +A  +  F     +VG    D G  + ++ R+V
Sbjct: 130 VLALAADFRVADPSTRFAFLFTRVGLSGGDMG-AAYLLPRVV 170

>3rrv_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.45A {Mycobacterium avium subsp} Length = 276

 Score =  143 bits (364), Expect = 3e-42
 Identities = 43/156 (27%), Positives = 64/156 (41%), Gaps = 6/156 (3%)

Query: 68  FTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTE 127
            T+I         +  IT+NRPD  N+        L R +    DD +    ++TG G  
Sbjct: 27  PTEIDVRAD--GALRIITLNRPDSLNSVNDDLHVGLARLWQRLTDDPTARAAVITGAGR- 83

Query: 128 AFCSGGD-QALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMV 186
           AF +GGD   L+     AD       +  ++ + + R   PV+A V G AVG G  L  +
Sbjct: 84  AFSAGGDFGYLKELSADADLRAKTIRDGREIVLGMARCRIPVVAAVNGPAVGLGCSLVAL 143

Query: 187 CDLTIAADNAIFGQTGPKVGSF-DAGYGSSIMSRLV 221
            D+   A+NA       +VG     G G       +
Sbjct: 144 SDIVYIAENAYLADPHVQVGLVAADG-GPLTWPLHI 178

>3swx_A Probable enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.10A {Mycobacterium abscessus} Length = 265

 Score =  143 bits (363), Expect = 3e-42
 Identities = 41/163 (25%), Positives = 69/163 (42%), Gaps = 6/163 (3%)

Query: 62  DESGTEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIIL 121
             S +++  +   +     +  I +NRP +RNAF    ++EL  A  +   D+ +   +L
Sbjct: 2   PGSMSDYETLRIRRD--GYVLVIGLNRPAKRNAFDKTMLEELALALGEYETDTDLRAAVL 59

Query: 122 TGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGH 181
            G+G   F +G D A    +            +   QV  R+L KP++  V G  +  G 
Sbjct: 60  YGEG-PLFTAGLDLASVAAEIQGGASLTPEGGINPWQVDGRQLSKPLLVAVHGKVLTLGI 118

Query: 182 VLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVSTV 224
            L +  D+ IA + A F Q     G +    G++I  R   T 
Sbjct: 119 ELALAADIVIADETATFAQLEVNRGIY-PFGGATI--RFPRTA 158

>2q35_A CURF; crotonase, lyase; 1.65A {Lyngbya majuscula} PDB: 2q34_A 2q2x_A Length = 243

 Score =  142 bits (360), Expect = 4e-42
 Identities = 38/152 (25%), Positives = 61/152 (40%), Gaps = 11/152 (7%)

Query: 71  IIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFC 130
            + E     G+ +IT+     RN F P  V+ L   F+    +    V+ILTG G   F 
Sbjct: 5   QLTELG--NGVVQITMKDESSRNGFSPSIVEGLRHCFSVVAQNQQYKVVILTGYG-NYFS 61

Query: 131 SGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLT 190
           SG  +    R    + E        DL   I     P+IA + G++ GGG +L +  D  
Sbjct: 62  SGASKEFLIRKTRGEVEVL------DLSGLILDCEIPIIAAMQGHSFGGGLLLGLYADFV 115

Query: 191 IAADNAIFGQTGPKVGSF-DAGYGSSIMSRLV 221
           + +  +++     K G        S I+   +
Sbjct: 116 VFSQESVYATNFMKYGFTPVGA-TSLILREKL 146

>3p5m_A Enoyl-COA hydratase/isomerase; seattle structural genomics center for infectious disease, S coenzyme A, tuberculosis; 2.05A {Mycobacterium avium} Length = 255

 Score =  142 bits (361), Expect = 5e-42
 Identities = 56/155 (36%), Positives = 75/155 (48%), Gaps = 12/155 (7%)

Query: 68  FTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTE 127
              I  E      + +I ++RP++ NA     ++EL     DA  D SV  ++LTG G  
Sbjct: 5   MNGISVEHD--GAVLRIRLDRPEKLNAVDTPMLEELSVHIRDAEADESVRAVLLTGAG-R 61

Query: 128 AFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVC 187
           AFCSGGD       G AD  N        +   I  LPKPVIA V G AVG G  L + C
Sbjct: 62  AFCSGGDLTGGDTAGAADAAN-------RVVRAITSLPKPVIAGVHGAAVGFGCSLALAC 114

Query: 188 DLTIAADNAIFGQTGPKVG-SFDAGYGSSIMSRLV 221
           DL +AA  + F     +VG   D G  S+++  L+
Sbjct: 115 DLVVAAPASYFQLAFTRVGLMPDGG-ASALLPLLI 148

>3qk8_A Enoyl-COA hydratase ECHA15; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 1.60A {Mycobacterium marinum M} PDB: 3q1t_A Length = 272

 Score =  143 bits (362), Expect = 5e-42
 Identities = 37/158 (23%), Positives = 69/158 (43%), Gaps = 6/158 (3%)

Query: 66  TEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKG 125
            +F  + +E     G+  + ++ P   N+  P   ++L   +     D  V V+++ G+G
Sbjct: 10  QDFPSLRFEPGEH-GVLNLVLDSPGL-NSVGPQMHRDLADVWPVIDRDPDVRVVLVRGEG 67

Query: 126 TEAFCSGGD-QALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLH 184
             AF SGG  + +    G  +          DL + +  L KPV++ + G AVG G V+ 
Sbjct: 68  K-AFSSGGSFELIDETIGDYEGRIRIMREARDLVLNLVNLDKPVVSAIRGPAVGAGLVVA 126

Query: 185 MVCDLTIAADNAIFGQTGPKVGSF-DAGYGSSIMSRLV 221
           ++ D+++A+  A       K+G        +     LV
Sbjct: 127 LLADISVASATAKIIDGHTKLGVAAGDH-AAICWPLLV 163

>2vx2_A Enoyl-COA hydratase domain-containing protein 3; isomerase, fatty acid metabolism, transit peptide, lipid Met crontonase, mitochondrion, CAsp; 2.3A {Homo sapiens} Length = 287

 Score =  143 bits (362), Expect = 6e-42
 Identities = 50/187 (26%), Positives = 74/187 (39%), Gaps = 14/187 (7%)

Query: 44  HRIHGEVPSHDVVWR------IACDESGTEFTDIIYEKAVGEGIAKITINRPDRRNAFRP 97
           H  H      D+         +      +E       +   +GI  I ++ P +RN    
Sbjct: 2   HHHHHHSSGVDLGTENLYFQSMGAGRRESEPRPTSARQL--DGIRNIVLSNPKKRNTLSL 59

Query: 98  HTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADY--ENFGRLNVL 155
             +K L        D + + VII++ +G   F SG D    T +   DY  E F   +  
Sbjct: 60  AMLKSLQSDILHDADSNDLKVIIISAEG-PVFSSGHDLKELTEEQGRDYHAEVFQTCS-- 116

Query: 156 DLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSS 215
            + + IR  P PVIAMV G A   G  L   CD+ +A+D + F   G  VG F       
Sbjct: 117 KVMMHIRNHPVPVIAMVNGLATAAGCQLVASCDIAVASDKSSFATPGVNVGLF-CSTPGV 175

Query: 216 IMSRLVS 222
            ++R V 
Sbjct: 176 ALARAVP 182

>3qxz_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.35A {Mycobacterium abscessus} Length = 265

 Score =  142 bits (361), Expect = 6e-42
 Identities = 44/157 (28%), Positives = 69/157 (43%), Gaps = 5/157 (3%)

Query: 65  GTEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGK 124
           G+  T++  E    +G+A +T++ P  RN+F     ++L  A+    DD +V VI+LTG 
Sbjct: 3   GSMVTELHEEIR--DGVAVLTLHGPSTRNSFTVELGRQLGAAYQRLDDDPAVRVIVLTGA 60

Query: 125 GTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLH 184
              AFCSG    +               +   +Q     L  PVIA V G+A+G G  L 
Sbjct: 61  P-PAFCSGAQ--ISAAAETFAAPRNPDFSASPVQPAAFELRTPVIAAVNGHAIGIGMTLA 117

Query: 185 MVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLV 221
           +  D+ I A+   +     + G          + RLV
Sbjct: 118 LHADIRILAEEGRYAIPQVRFGVAPDALAHWTLPRLV 154

>3isa_A Putative enoyl-COA hydratase/isomerase; structural genomics, PSI-2, protein structure initiative, EN hydratase; 1.76A {Bordetella parapertussis} Length = 254

 Score =  141 bits (359), Expect = 9e-42
 Identities = 34/157 (21%), Positives = 56/157 (35%), Gaps = 10/157 (6%)

Query: 66  TEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKG 125
           +    +  E+         T++RP++RNA     V+ LI   + A  +  V +++  G G
Sbjct: 4   SASLPLAIERR--PAAWTFTLSRPEKRNALSAELVEALIDGVDAAHREQ-VPLLVFAGAG 60

Query: 126 TEAFCSGGD-QALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLH 184
              F +G D     T+          R+    L  ++   P   +A+  G   G G  L 
Sbjct: 61  -RNFSAGFDFTDYETQSEGDLLLRMVRIE--MLLQRVAGSPSLTLALAHGRNFGAGVDLF 117

Query: 185 MVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLV 221
             C        A F   G K G      G+     +V
Sbjct: 118 AACKWRYCTPEAGFRMPGLKFGLV---LGTRRFRDIV 151

>3fdu_A Putative enoyl-COA hydratase/isomerase; structural genomics, PSI-2; 2.00A {Acinetobacter baumannii} Length = 266

 Score =  141 bits (359), Expect = 1e-41
 Identities = 36/158 (22%), Positives = 65/158 (41%), Gaps = 6/158 (3%)

Query: 66  TEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKG 125
           +    +        G+  + INRP+ +NA        + +A ++A  +  V V++L G  
Sbjct: 2   SLHPHLNANLE--GGVLTLAINRPEAKNALYGELYLWIAKALDEADQNKDVRVVVLRGAE 59

Query: 126 TEAFCSGGD-QALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLH 184
              F +G D +         +    G++    L     RL KP+I  V G A+G G  + 
Sbjct: 60  -HDFTAGNDMKDFMGFVQNPNAGPAGQVPPFVLLKSAARLSKPLIIAVKGVAIGIGVTIL 118

Query: 185 MVCDLTIAADNAIFGQTGPKVGSF-DAGYGSSIMSRLV 221
           +  DL  A + A+F      +G   + G  S ++ +  
Sbjct: 119 LQADLVFADNTALFQIPFVSLGLSPEGG-ASQLLVKQA 155

>1szo_A 6-oxocamphor hydrolase; enzyme-product complex; HET: CAX; 1.90A {Rhodococcus SP} SCOP: c.14.1.3 PDB: 1o8u_A Length = 257

 Score =  140 bits (356), Expect = 2e-41
 Identities = 36/163 (22%), Positives = 64/163 (39%), Gaps = 10/163 (6%)

Query: 62  DESGTEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIIL 121
            E   ++ +I  E+    G+  +T++   +   +      EL   F+D   D    V+IL
Sbjct: 9   QEYSQKYENIRLERD--GGVLLVTVHTEGKSLVWTSTAHDELAYCFHDIACDRENKVVIL 66

Query: 122 TGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGH 181
           TG G  +FC+  D          D++         L   +  +  PVIA V G       
Sbjct: 67  TGTG-PSFCNEIDFTSFNLGTPHDWDEIIFE-GQRLLNNLLSIEVPVIAAVNGPVTNAPE 124

Query: 182 VLHMVCDLTIAADNAIFGQTGP--KVGSF-DAGYGSSIMSRLV 221
            + ++ D+ +AA++A F   GP    G     G    +   ++
Sbjct: 125 -IPVMSDIVLAAESATFQD-GPHFPSGIVPGDG-AHVVWPHVL 164

>2j5g_A ALR4455 protein; enzyme evolution, C-C bond hydrolase, hydrolase, lyase, crotonase, biocatalysis, beta-diketone; 1.46A {Anabaena SP} PDB: 2j5s_A* 2j5g_D Length = 263

 Score =  140 bits (355), Expect = 4e-41
 Identities = 34/163 (20%), Positives = 65/163 (39%), Gaps = 8/163 (4%)

Query: 62  DESGTEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIIL 121
            E  T++ ++ + +    GI ++ ++       F   T +E   AF D   D    V+IL
Sbjct: 16  PEYFTKYENLHFHRDEN-GILEVRMHTNGSSLVFTGKTHREFPDAFYDISRDRDNRVVIL 74

Query: 122 TGKGTEAFCSGGD-QALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGG 180
           TG G +A+ +  D  +L       +++         +   +  +  PVI+ V G A+   
Sbjct: 75  TGSG-DAWMAEIDFPSLGDVTNPREWDKTYWEG-KKVLQNLLDIEVPVISAVNGAALLHS 132

Query: 181 HVLHMVCDLTIAADNAIF-GQTGPKVGSFDAGYGSSI-MSRLV 221
               +  D+ +A++N +F        G    G G  I     +
Sbjct: 133 E-YILTTDIILASENTVFQDMPHLNAGIV-PGDGVHILWPLAL 173

>3qre_A Enoyl-COA hydratase, ECHA12_1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.40A {Mycobacterium marinum M} Length = 298

 Score =  141 bits (357), Expect = 4e-41
 Identities = 55/191 (28%), Positives = 76/191 (39%), Gaps = 13/191 (6%)

Query: 39  MNDSYHRIHGEVPSHDVVWRIACDESGTEFTDIIYEKAVGEGIAKITINRPDRRNAFRPH 98
           M   +H   G + +           +      ++YE   G G+A IT NR DR NA+ P 
Sbjct: 1   MAHHHHHHMGTLEAQTQG--PGSMSAADAQDAVLYEATPG-GVAIITFNRADRLNAWGPD 57

Query: 99  TVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGD-------QALRTRDGYADYENFGR 151
                  A + A  D  + VI+LTG+G   FC+G                  A   N   
Sbjct: 58  LAAGFYAAIDRAEADPGIRVIVLTGRGR-GFCAGAYLGSADAAAGYDKTMAKAKDANLAD 116

Query: 152 LNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAG 211
           L        +  L KPVIA + G  VG G    ++CD+  AA  A F     + G   A 
Sbjct: 117 LVGERPPHFVTMLRKPVIAAINGPCVGIGLTQALMCDVRFAAAGAKFAAVFARRGLI-AE 175

Query: 212 YGSS-IMSRLV 221
           +G S I+ RL 
Sbjct: 176 FGISWILPRLT 186

>3tlf_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, otholog; 2.15A {Mycobacterium avium subsp} Length = 274

 Score =  140 bits (355), Expect = 5e-41
 Identities = 52/164 (31%), Positives = 72/164 (43%), Gaps = 10/164 (6%)

Query: 64  SGTEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTG 123
               F  I YE       A IT+NRPD  NA  PH + EL  A+++A +D  V ++++TG
Sbjct: 6   PVDSFDTIKYEVD--GHTATITLNRPDALNALSPHMITELRAAYHEAENDDRVWLLVVTG 63

Query: 124 KGTEAFCSGGDQALRTRDGYADYENFGRL------NVLDLQVQIRRLPKPVIAMVAGYAV 177
            G  AFCSG D      DG   YE              +     R + KPV+  V G   
Sbjct: 64  TG-RAFCSGADVKEIPEDGKVIYERPYLSTYDQWEAPQEGTPPFRTMAKPVLTAVNGICC 122

Query: 178 GGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLV 221
           G G       D+ IA++ A F      +G   AG     +SR++
Sbjct: 123 GAGMDWVTTTDIVIASEQATFFDPHVSIGLV-AGRELVRVSRVL 165

>3l3s_A Enoyl-COA hydratase/isomerase family protein; crotonase superfamily, dimer of trimers, PSI-2, NYSGXRC, structural genomics; 2.32A {Ruegeria pomeroyi} Length = 263

 Score =  139 bits (353), Expect = 6e-41
 Identities = 41/163 (25%), Positives = 65/163 (39%), Gaps = 10/163 (6%)

Query: 66  TEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKG 125
           +   D +  + + EG+  +T+ R    +      +  L  A   A  D  V V+++ G G
Sbjct: 2   SLSQDGLLGEVLSEGVLTLTLGRAPA-HPLSRAMIAALHDALRRAMGDDHVHVLVIHGPG 60

Query: 126 TEAFCSGGD------QALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGG 179
              FC+G D            +G A   +        L + +   PKP IA+V G A   
Sbjct: 61  -RIFCAGHDLKEIGRHRADPDEGRAFVTDLFEA-CSALMLDLAHCPKPTIALVEGIATAA 118

Query: 180 GHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVS 222
           G  L   CDL  A+  A F   G + G F     +  +SR++ 
Sbjct: 119 GLQLMAACDLAYASPAARFCLPGVQNGGF-CTTPAVAVSRVIG 160

>3he2_A Enoyl-COA hydratase ECHA6; fatty acid metabolism, lipid metabolism, lyase, structural genomics; HET: PGE; 2.30A {Mycobacterium tuberculosis} Length = 264

 Score =  139 bits (353), Expect = 9e-41
 Identities = 54/161 (33%), Positives = 75/161 (46%), Gaps = 12/161 (7%)

Query: 62  DESGTEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIIL 121
            ++    + I   +A  E +  I + RP+RRNA     V+EL +A   A D S    I+L
Sbjct: 14  AQTQGPGSMIGITQA--EAVLTIELQRPERRNALNSQLVEELTQAIRKAGDGS-ARAIVL 70

Query: 122 TGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGH 181
           TG+GT AFC+G D  L      ADY +       +L   +   P PV+  + G A+G G 
Sbjct: 71  TGQGT-AFCAGAD--LSGDAFAADYPDRLI----ELHKAMDASPMPVVGAINGPAIGAGL 123

Query: 182 VLHMVCDLTIAADNAIFGQTGPKVGSF-DAGYGSSIMSRLV 221
            L M CDL + A +A F     K G   D       +S LV
Sbjct: 124 QLAMQCDLRVVAPDAFFQFPTSKYGLALDNW-SIRRLSSLV 163

>4f47_A Enoyl-COA hydratase ECHA19; ssgcid, seattle structural genomics center for infectious DI niaid; 1.75A {Mycobacterium marinum} Length = 278

 Score =  139 bits (353), Expect = 1e-40
 Identities = 49/165 (29%), Positives = 82/165 (49%), Gaps = 8/165 (4%)

Query: 62  DESGTEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIIL 121
             +G    D + E+        +T+NRP RRNA     ++ ++ A++   +D  +   IL
Sbjct: 13  PANGESGPDALVEQR--GHTLIVTMNRPSRRNALSGEMMQIMVEAWDRVDNDPDIRCCIL 70

Query: 122 TGKGTEAFCSGGD--QALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGG 179
           TG G   FC+G D   A +   G +  +     + +D  ++ RRL KP+IA V G A+ G
Sbjct: 71  TGAG-GYFCAGMDLKAATKKPPGDSFKDGSYDPSRIDALLKGRRLKKPLIAAVEGPAIAG 129

Query: 180 GHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVSTV 224
           G  +    D+ +AA++A FG +  K   +    GS++  RLV  +
Sbjct: 130 GTEILQGTDIRVAAESAKFGISEAKWSLY-PMGGSAV--RLVRQI 171

>3rsi_A Putative enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.00A {Mycobacterium abscessus} Length = 265

 Score =  139 bits (352), Expect = 1e-40
 Identities = 43/161 (26%), Positives = 72/161 (44%), Gaps = 6/161 (3%)

Query: 64  SGTEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTG 123
           S +   +++ E+     +  +T+NRP RRNA   + V +   A+++   D  +   ILTG
Sbjct: 4   SMSAARELLVERD--GPVVILTMNRPHRRNALSTNMVSQFAAAWDEIDHDDGIRAAILTG 61

Query: 124 KGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVL 183
            G  A+C GGD +                 +    +    L KP+IA V G  +GGG  +
Sbjct: 62  AG-SAYCVGGDLSDGWMVRDGSAPPLDPATIGKGLLLSHTLTKPLIAAVNGACLGGGCEM 120

Query: 184 HMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVSTV 224
               D+ ++ ++A FG    + G    G GS +  RL   +
Sbjct: 121 LQQTDIRVSDEHATFGLPEVQRGLV-PGAGSMV--RLKRQI 158

>3pe8_A Enoyl-COA hydratase; emerald biostructures, structural genomics, seattle structur genomics center for infectious disease, ssgcid, lyase; 1.60A {Mycobacterium smegmatis} PDB: 3p85_A* 3qyr_A Length = 256

 Score =  138 bits (351), Expect = 1e-40
 Identities = 46/159 (28%), Positives = 73/159 (45%), Gaps = 15/159 (9%)

Query: 64  SGTEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTG 123
           S  +   ++ +    + +  +T+NRP  RNA          RA +DA++D  V V+I+TG
Sbjct: 4   SMADSPVLLVDTT--DRVRTLTLNRPQSRNALSAELRSTFFRALSDAQNDDDVDVVIVTG 61

Query: 124 KGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVL 183
                FC+G D                     D+  +   + KPVI  + G AV GG  L
Sbjct: 62  AD-PVFCAGLDLKELGDTTELP----------DISPKWPDMTKPVIGAINGAAVTGGLEL 110

Query: 184 HMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSI-MSRLV 221
            + CD+ IA++NA F  T  +VG     +G S+ + + V
Sbjct: 111 ALYCDILIASENAKFADTHARVGLM-PTWGLSVRLPQKV 148

>2pbp_A Enoyl-COA hydratase subunit I; B-oxidation, structural genomics, NPPSFA, nationa on protein structural and functional analyses; 1.80A {Geobacillus kaustophilus} PDB: 2qq3_A Length = 258

 Score =  138 bits (351), Expect = 2e-40
 Identities = 43/135 (31%), Positives = 63/135 (46%), Gaps = 6/135 (4%)

Query: 66  TEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKG 125
           +EF  I   +     +  I + RPD  NA     V E++ A      +  V VI+LTG+G
Sbjct: 2   SEFVSIAARQE--GAVGIIELARPDVLNALSRQMVAEIVAAVEAFDRNEKVRVIVLTGRG 59

Query: 126 TEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHM 185
             AF +G D     +D     E   +    D   ++  +  P+IA V G A+GGG  L +
Sbjct: 60  -RAFAAGADIQEMAKDDPIRLEWLNQFADWD---RLSIVKTPMIAAVNGLALGGGFELAL 115

Query: 186 VCDLTIAADNAIFGQ 200
            CDL +A+  A FG 
Sbjct: 116 SCDLIVASSAAEFGF 130

>3qxi_A Enoyl-COA hydratase ECHA1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.20A {Mycobacterium marinum} Length = 265

 Score =  138 bits (350), Expect = 3e-40
 Identities = 50/165 (30%), Positives = 75/165 (45%), Gaps = 16/165 (9%)

Query: 62  DESGTEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIIL 121
           + +G    +++ E+   + I  ITINRP  +N+      + L  A +    D+ + V IL
Sbjct: 8   ELNGDTEPEVLVEQR--DRILIITINRPKAKNSVNAAVSRALADAMDRLDADAGLSVGIL 65

Query: 122 TGKGTEAFCSGGD--QALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGG 179
           TG G  +FC+G D     R  +   +    G           R   KP+IA V GYA+ G
Sbjct: 66  TGAG-GSFCAGMDLKAFARGENVVVEGRGLGF--------TERPPAKPLIAAVEGYALAG 116

Query: 180 GHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVSTV 224
           G  L +  DL +AA ++ FG    K G   AG G  +  RL   +
Sbjct: 117 GTELALATDLIVAARDSAFGIPEVKRGLV-AGGGGLL--RLPERI 158

>1wz8_A Enoyl-COA hydratase; lyase, crotonase, hexamer, structural genomics, riken S genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.14.1.3 Length = 264

 Score =  138 bits (349), Expect = 3e-40
 Identities = 33/158 (20%), Positives = 57/158 (36%), Gaps = 6/158 (3%)

Query: 66  TEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKG 125
             +  + +      G+ +IT  R ++ NA  P   + L R + D      V  ++L G+G
Sbjct: 7   ARYPGLAFAWP-RPGVLEITF-RGEKLNAMPPALHRGLARVWRDLEAVEGVRAVLLRGEG 64

Query: 126 TEAFCSGGD-QALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLH 184
              F +GG    +       +          DL +     P+PV+A V   AVG G  L 
Sbjct: 65  -GVFSAGGSFGLIEEMRASHEALLRVFWEARDLVLGPLNFPRPVVAAVEKVAVGAGLALA 123

Query: 185 MVCDLTIAADNAIFGQTGPKVGSF-DAGYGSSIMSRLV 221
           +  D+ +            ++G          +   LV
Sbjct: 124 LAADIAVVGKGTRLLDGHLRLGVAAGDH-AVLLWPLLV 160

>3lao_A Enoyl-COA hydratase/isomerase; alpha-beta sandwich, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.40A {Pseudomonas aeruginosa} Length = 258

 Score =  137 bits (348), Expect = 3e-40
 Identities = 34/162 (20%), Positives = 55/162 (33%), Gaps = 6/162 (3%)

Query: 63  ESGTEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILT 122
           E+ +    +  E+     +  I ++R  +RNAF    + +L  A  +          +L 
Sbjct: 6   EANSGPGRVTREQR--GHLFLIGLDRAGKRNAFDSAMLADLALAMGEYERSEESRCAVLF 63

Query: 123 GKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHV 182
             G E F +G D         A    +    V    V   R  KP++  V G     G  
Sbjct: 64  AHG-EHFTAGLDLMELAPKLAASGFRYPDGGVDPWGVVQPRRSKPLVVAVQGTCWTAGIE 122

Query: 183 LHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVSTV 224
           L +  D+ +AA    F       G      GS++  R     
Sbjct: 123 LMLNADIAVAARGTRFAHLEVLRGIP-PLGGSTV--RFPRAA 161

>1hzd_A AUH, AU-binding protein/enoyl-COA hydratase; RNA-binding protein,enoyl-COA hydratase, riken structural genomics/proteomics initiative, RSGI; 2.20A {Homo sapiens} SCOP: c.14.1.3 PDB: 2zqq_A 2zqr_A Length = 272

 Score =  137 bits (348), Expect = 5e-40
 Identities = 37/123 (30%), Positives = 59/123 (47%), Gaps = 1/123 (0%)

Query: 79  EGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALR 138
            GI  + INR   +N+   + +K L +A +  + D  V  II+  +    FC+G D   R
Sbjct: 20  RGIVVLGINRAYGKNSLSKNLIKMLSKAVDALKSDKKVRTIIIRSEVPGIFCAGADLKER 79

Query: 139 TRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIF 198
            +   ++   F    +  +   I  LP P IA + G A+GGG  L + CD+ +AA +A  
Sbjct: 80  AKMSSSEVGPFVS-KIRAVINDIANLPVPTIAAIDGLALGGGLELALACDIRVAASSAKM 138

Query: 199 GQT 201
           G  
Sbjct: 139 GLV 141

>3oc7_A Enoyl-COA hydratase; seattle structural genomics center for infectious disease, S non-pathogenic mycobacterium species, ortholog; 1.50A {Mycobacterium avium} Length = 267

 Score =  136 bits (345), Expect = 2e-39
 Identities = 40/161 (24%), Positives = 63/161 (39%), Gaps = 6/161 (3%)

Query: 63  ESGTEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILT 122
            S     D     A G  +A++T+N P  RNA     V +L +   DA  D +V V++L 
Sbjct: 3   GSMDALVDYAGPAATGGPVARLTLNSPHNRNALSTALVSQLHQGLRDASSDPAVRVVVLA 62

Query: 123 GKGTEAFCSGGD-QALRTRDGYADYENFGRLNVLDLQV---QIRRLPKPVIAMVAGYAVG 178
             G   FC+G D     +    +   +       ++      I     PVIA + G+   
Sbjct: 63  HTG-GTFCAGADLSEAGSGGSPSSAYDMAVERAREMAALMRAIVESRLPVIAAIDGHVRA 121

Query: 179 GGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSR 219
           GG  L   CD+ +A   + F  T  ++G       S  +  
Sbjct: 122 GGFGLVGACDIAVAGPRSSFALTEARIGVA-PAIISLTLLP 161

>3moy_A Probable enoyl-COA hydratase; ssgcid, seattle structural genomics center for infectious DI enoyl COA, actinobacteria, lyase; 1.50A {Mycobacterium smegmatis} Length = 263

 Score =  136 bits (344), Expect = 2e-39
 Identities = 50/138 (36%), Positives = 70/138 (50%), Gaps = 7/138 (5%)

Query: 64  SGTEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTG 123
           S T +T I   +    G+  I ++RPD  NA       E++ A  D   D  +G I++TG
Sbjct: 4   SMTTYTTIATSR-PVAGVGLIRLDRPDALNALNQTLEAEVLDAARDFDADLEIGAIVVTG 62

Query: 124 KGTEAFCSGGD-QALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHV 182
               AF +G D   + T            L+  D    + ++ KP++A VAGYA+GGG  
Sbjct: 63  SE-RAFAAGADIAEMVTLT-PHQARERNLLSGWD---SLTQVRKPIVAAVAGYALGGGCE 117

Query: 183 LHMVCDLTIAADNAIFGQ 200
           L M+CDL IAAD A FGQ
Sbjct: 118 LAMLCDLVIAADTARFGQ 135

>2gtr_A CDY-like, chromodomain Y-like protein; structural genomics, structural genomics consortium, SGC, unknown function; 1.90A {Homo sapiens} PDB: 2fw2_A Length = 261

 Score =  134 bits (339), Expect = 1e-38
 Identities = 34/161 (21%), Positives = 62/161 (38%), Gaps = 12/161 (7%)

Query: 67  EFTDIIYEKAVGEGIAKI-TINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKG 125
            + DI+  K   +G   I    +    N+  P  ++E+  A + A  D    +++L+  G
Sbjct: 3   RYRDIVVRKQ--DGFTHILLSTKSSENNSLNPEVMREVQSALSTAAADD-SKLVLLSAVG 59

Query: 126 TEAFCSGGD----QALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGH 181
              FC G D        T D   +        + +      +  KP+I  V G A+G G 
Sbjct: 60  -SVFCCGLDFIYFIRRLTDDRKRESTKMAEA-IRNFVNTFIQFKKPIIVAVNGPAIGLGA 117

Query: 182 VLHMVCDLTIAADNAIFGQTGPKVGSF-DAGYGSSIMSRLV 221
            +  +CD+  A + A F       G   D    + +  +++
Sbjct: 118 SILPLCDVVWANEKAWFQTPYTTFGQSPDGC-STVMFPKIM 157

>2f6q_A Peroxisomal 3,2-trans-enoyl-COA isomerase; peroxisomes, fatty acid metabolism, STR genomics, structural genomics consortium, SGC; 1.95A {Homo sapiens} SCOP: c.14.1.3 Length = 280

 Score =  134 bits (339), Expect = 1e-38
 Identities = 40/142 (28%), Positives = 60/142 (42%), Gaps = 7/142 (4%)

Query: 62  DESGTEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIIL 121
                 F  ++      +GI KI  NRP ++NA       E++RA   A  D S+ + +L
Sbjct: 19  YFQSMGFETLVVTSE--DGITKIMFNRPKKKNAINTEMYHEIMRALKAASKDDSI-ITVL 75

Query: 122 TGKGTEAFCSGGD---QALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVG 178
           TG G + + SG D          G  +      + + +        PKP+IA+V G AVG
Sbjct: 76  TGNG-DYYSSGNDLTNFTDIPPGGVEEKAKNNAVLLREFVGCFIDFPKPLIAVVNGPAVG 134

Query: 179 GGHVLHMVCDLTIAADNAIFGQ 200
               L  + D   A+D A F  
Sbjct: 135 ISVTLLGLFDAVYASDRATFHT 156

>1mj3_A Enoyl-COA hydratase, mitochondrial; homohexamer, lyase; HET: HXC; 2.10A {Rattus norvegicus} SCOP: c.14.1.3 PDB: 2dub_A* 1dub_A* 1ey3_A* 2hw5_A* Length = 260

 Score =  132 bits (335), Expect = 3e-38
 Identities = 53/135 (39%), Positives = 74/135 (54%), Gaps = 7/135 (5%)

Query: 68  FTDIIYEKAVGE-GIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGT 126
           F  II EK      +  I +NRP   NA     ++EL +A     +D +VG I+LTG G 
Sbjct: 3   FQYIITEKKGKNSSVGLIQLNRPKALNALCNGLIEELNQALETFEEDPAVGAIVLTG-GE 61

Query: 127 EAFCSGGD-QALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHM 185
           +AF +G D + ++ R  + D  +   L+  D    I R+ KPVIA V GYA+GGG  L M
Sbjct: 62  KAFAAGADIKEMQNRT-FQDCYSGKFLSHWD---HITRIKKPVIAAVNGYALGGGCELAM 117

Query: 186 VCDLTIAADNAIFGQ 200
           +CD+  A + A FGQ
Sbjct: 118 MCDIIYAGEKAQFGQ 132

>3r9q_A Enoyl-COA hydratase/isomerase; ssgcid, lyase,isomerase; 2.10A {Mycobacterium abscessus} PDB: 3qka_A Length = 262

 Score =  132 bits (335), Expect = 4e-38
 Identities = 46/150 (30%), Positives = 66/150 (44%), Gaps = 9/150 (6%)

Query: 71  IIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFC 130
           +  EKA    +  + +NRP  RNA    T   L+ AF +   D    V +L G     FC
Sbjct: 13  VRVEKA--GPVTTVILNRPHARNAVDGPTAAALLAAFTEFDADPEASVAVLWGDN-GTFC 69

Query: 131 SGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLT 190
           +G D      D   +    G   +        RL KPVIA ++G+AV GG  L + CDL 
Sbjct: 70  AGADLKAMGTDRGNELHPHGPGPMGP---SRLRLSKPVIAAISGHAVAGGIELALWCDLR 126

Query: 191 IAADNAIFGQTGPKVGSFDAGYGSSIMSRL 220
           +  ++A+ G    + G      G +I  RL
Sbjct: 127 VVEEDAVLGVFCRRWGVP-LIDGGTI--RL 153

>3hin_A Putative 3-hydroxybutyryl-COA dehydratase; structural genomics, protein structure INI NEW YORK structural genomix research consortium; 2.00A {Rhodopseudomonas palustris} Length = 275

 Score =  133 bits (336), Expect = 4e-38
 Identities = 28/137 (20%), Positives = 54/137 (39%), Gaps = 10/137 (7%)

Query: 66  TEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKG 125
            + + ++ +      +  I +NRP +RNA     +  L     D      +  +++ G G
Sbjct: 13  ADPSTLVVDTV--GPVLTIGLNRPKKRNALNDGLMAALKDCLTDI--PDQIRAVVIHGIG 68

Query: 126 TEAFCSGGDQALRTRDGYADYENFGRL--NVLDLQVQIRRLPKPVIAMVAGYAVGGGHVL 183
            + F +G D +        +     +    V D   +I+    PVIA + G  +GGG  L
Sbjct: 69  -DHFSAGLDLSELRERDATEGLVHSQTWHRVFD---KIQYCRVPVIAALKGAVIGGGLEL 124

Query: 184 HMVCDLTIAADNAIFGQ 200
                + +A  +A +  
Sbjct: 125 ACAAHIRVAEASAYYAL 141

>3gkb_A Putative enoyl-COA hydratase; structural genomics, unknown function, PSI-2, protein struct initiative; 1.80A {Streptomyces avermitilis} Length = 287

 Score =  132 bits (335), Expect = 7e-38
 Identities = 34/141 (24%), Positives = 53/141 (37%), Gaps = 8/141 (5%)

Query: 66  TEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKG 125
             ++ +        G+A+I ++ P   N      ++EL        DDSSV VI+ +   
Sbjct: 6   DAYSTLRVSSE--HGVARIILDNPPV-NVIGATMMRELRTVLTTLADDSSVRVIVFSSAD 62

Query: 126 TEAFCSGGD----QALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGH 181
            E F +  D    + +      A            +   IR  P+  I  +AG A GGG 
Sbjct: 63  PEFFLAHVDMRIGEKMDALQELAASAPADVNVFQAVGELIRHQPQVTIVKLAGKARGGGA 122

Query: 182 VLHMVCDLTIAA-DNAIFGQT 201
                 D+  AA + A  GQ 
Sbjct: 123 EFVAAADMAFAAAETAGLGQI 143

>3trr_A Probable enoyl-COA hydratase/isomerase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.09A {Mycobacterium abscessus} Length = 256

 Score =  131 bits (331), Expect = 1e-37
 Identities = 47/150 (31%), Positives = 65/150 (43%), Gaps = 13/150 (8%)

Query: 71  IIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFC 130
           ++ E+   + +  ITINRPD RNA      + L  A +     + + V I+TG G   FC
Sbjct: 9   VLIEQR--DRVLLITINRPDARNAVNRAVSQGLAAAADQLDSSADLSVAIITGAG-GNFC 65

Query: 131 SGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLT 190
           +G D            E                  KP+IA V G+A+ GG  L + CDL 
Sbjct: 66  AGMDLKAFVSGEAVLSERGLGFT-------NVPPRKPIIAAVEGFALAGGTELVLSCDLV 118

Query: 191 IAADNAIFGQTGPKVGSFDAGYGSSIMSRL 220
           +A  +A FG    K G   AG G  +  RL
Sbjct: 119 VAGRSAKFGIPEVKRGLV-AGAGGLL--RL 145

>3h81_A Enoyl-COA hydratase ECHA8; niaid, decode, infectious disease, MPCS, fatty acid metaboli metabolism, lyase, structural genomics; 1.80A {Mycobacterium tuberculosis} PDB: 3q0j_A* 3pzk_A 3q0g_A* Length = 278

 Score =  131 bits (333), Expect = 1e-37
 Identities = 48/154 (31%), Positives = 69/154 (44%), Gaps = 6/154 (3%)

Query: 47  HGEVPSHDVVWRIACDESGTEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRA 106
           H        +           +  I+ E+   + +  IT+NRP   NA     + E+  A
Sbjct: 3   HHHHHHMGTLEAQTQGPGSMTYETILVERD--QRVGIITLNRPQALNALNSQVMNEVTSA 60

Query: 107 FNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPK 166
             +  DD  +G II+TG   +AF +G D        +AD              ++  +  
Sbjct: 61  ATELDDDPDIGAIIITGSA-KAFAAGADIKEMADLTFADAFTADFFATWG---KLAAVRT 116

Query: 167 PVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQ 200
           P IA VAGYA+GGG  L M+CD+ IAAD A FGQ
Sbjct: 117 PTIAAVAGYALGGGCELAMMCDVLIAADTAKFGQ 150

>2fbm_A Y chromosome chromodomain protein 1, telomeric IS; acetyltransferase, structural genomics, structural genomics consortium, SGC, unknown function; 2.28A {Homo sapiens} SCOP: c.14.1.3 Length = 291

 Score =  132 bits (333), Expect = 1e-37
 Identities = 36/164 (21%), Positives = 63/164 (38%), Gaps = 10/164 (6%)

Query: 63  ESGTEFTDIIYEKAVGEGIAKIT-INRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIIL 121
              + + DI+ +K   +G  +I    R   +NA     +KE++ A N A  D    +++ 
Sbjct: 17  RGSSTYRDIVVKKE--DGFTQIVLSTRSTEKNALNTEVIKEIVNALNSAAADD-SKLVLF 73

Query: 122 TGKGTEAFCSGGD---QALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVG 178
           +  G   FC G D        R+            + +      +  KP++  V G A+G
Sbjct: 74  SAAG-SVFCCGLDFGYFVKHLRNNRNTASLEMVDTIKNFVNTFIQFKKPIVVSVNGPAIG 132

Query: 179 GGHVLHMVCDLTIAADNAIFGQTGPKVGSF-DAGYGSSIMSRLV 221
            G  +  +CDL  A + A F       G   D    S    +++
Sbjct: 133 LGASILPLCDLVWANEKAWFQTPYTTFGQSPDGC-SSITFPKMM 175

>1ef8_A Methylmalonyl COA decarboxylase; lyase; 1.85A {Escherichia coli} SCOP: c.14.1.3 PDB: 1ef9_A* Length = 261

 Score =  129 bits (327), Expect = 5e-37
 Identities = 35/138 (25%), Positives = 55/138 (39%), Gaps = 10/138 (7%)

Query: 67  EFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGT 126
            +  +         +A I  N   + NA     + +L++A +D      +  IIL     
Sbjct: 2   SYQYVNVVTI--NKVAVIEFNYGRKLNALSKVFIDDLMQALSDLNRPE-IRCIILRAPSG 58

Query: 127 E-AFCSGGDQALRTRDGYAD--YENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVL 183
              F +G D       G     Y++  R     +   I++ PKP+I+MV G   GG   +
Sbjct: 59  SKVFSAGHDIHELPSGGRDPLSYDDPLR----QITRMIQKFPKPIISMVEGSVWGGAFEM 114

Query: 184 HMVCDLTIAADNAIFGQT 201
            M  DL IAA  + F  T
Sbjct: 115 IMSSDLIIAASTSTFSMT 132

>2ppy_A Enoyl-COA hydratase; beta-oxidation, fatty acid metabol lyase, structural genomics, NPPSFA; 2.16A {Geobacillus kaustophilus} Length = 265

 Score =  129 bits (327), Expect = 6e-37
 Identities = 35/140 (25%), Positives = 57/140 (40%), Gaps = 5/140 (3%)

Query: 63  ESGTEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILT 122
              T+   +   K   +GIA+I ++   + N++     KE   A +D R D  + V+I+ 
Sbjct: 3   AVETKKQYLTVFKE--DGIAEIHLHIN-KSNSYDLEFYKEFNAAIDDIRFDPDIKVVIVM 59

Query: 123 GKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHV 182
               + F +G D              F      +   +I R P+  IA + G+ VGGG  
Sbjct: 60  SDVPKFFSAGADINFLRSADPRFKTQFCLF-CNETLDKIARSPQVYIACLEGHTVGGGLE 118

Query: 183 LHMVCDLTIAADNAI-FGQT 201
           + + CDL    D A   G  
Sbjct: 119 MALACDLRFMGDEAGKIGLP 138

>3pea_A Enoyl-COA hydratase/isomerase family protein; structural genomics, center for structural genomics of infec diseases, csgid; HET: FLC PG4; 1.82A {Bacillus anthracis} Length = 261

 Score =  127 bits (322), Expect = 3e-36
 Identities = 30/138 (21%), Positives = 57/138 (41%), Gaps = 6/138 (4%)

Query: 64  SGTEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTG 123
           S      +       + IA  T+N     NA     + ++    +    D ++ V+++ G
Sbjct: 1   SNAMLKFLSVRVE--DHIAVATLNHAPA-NAMSSQVMHDVTELIDQVEKDDNIRVVVIHG 57

Query: 124 KGTEAFCSGGD-QALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHV 182
           +G   F +G D +   +           +L  +  + ++ +  KPVIA + G A+GGG  
Sbjct: 58  EG-RFFSAGADIKEFTSVTEAKQATELAQLGQVTFE-RVEKCSKPVIAAIHGAALGGGLE 115

Query: 183 LHMVCDLTIAADNAIFGQ 200
             M C +  A ++A  G 
Sbjct: 116 FAMSCHMRFATESAKLGL 133

>3h0u_A Putative enoyl-COA hydratase; structural genomics, isomerase, PSI-2, protein structure initiative; 1.50A {Streptomyces avermitilis} Length = 289

 Score =  128 bits (323), Expect = 5e-36
 Identities = 29/138 (21%), Positives = 50/138 (36%), Gaps = 6/138 (4%)

Query: 66  TEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKG 125
             +  I         +   T N P   N   P  V++L+    +    ++  V+I     
Sbjct: 5   ASYETIKARLD--GTVLSATFNAPPM-NLIGPEVVRDLVALLEELAHPTAPRVVIFDSAD 61

Query: 126 TEAFCSGGDQALRTRDGYADYENFGRLNVLDLQV--QIRRLPKPVIAMVAGYAVGGGHVL 183
            + F    D            +  G  +     +  ++ +LP   IA + G A G G   
Sbjct: 62  ADFFFPHVDMTKVPEYTAEAAKAGGPGDASLGMLFRKLSQLPAVTIAKLRGRARGAGSEF 121

Query: 184 HMVCDLTIAA-DNAIFGQ 200
            + CD+  A+ +NAI GQ
Sbjct: 122 LLACDMRFASRENAILGQ 139

>1pjh_A Enoyl-COA isomerase; ECI1P; beta-BETA-alpha spiral fold, inter-trimer contacts; 2.10A {Saccharomyces cerevisiae} SCOP: c.14.1.3 PDB: 1hno_A 1k39_A* 1hnu_A Length = 280

 Score =  125 bits (317), Expect = 2e-35
 Identities = 25/145 (17%), Positives = 42/145 (28%), Gaps = 14/145 (9%)

Query: 67  EFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGT 126
           +   I Y          I +  PD  NA        L      A  +  V   I+   G 
Sbjct: 7   QNEKISYRIE--GPFFIIHLINPDNLNALEGEDYIYLGELLELADRNRDVYFTIIQSSG- 63

Query: 127 EAFCSGGD----------QALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYA 176
             F SG D             +     + + +      + +     +  K +I  + G A
Sbjct: 64  RFFSSGADFKGIAKAQGDDTNKYPSETSKWVSNFVARNVYVTDAFIKHSKVLICCLNGPA 123

Query: 177 VGGGHVLHMVCDLTIAA-DNAIFGQ 200
           +G    L  +CD+  +  D      
Sbjct: 124 IGLSAALVALCDIVYSINDKVYLLY 148

>4di1_A Enoyl-COA hydratase ECHA17; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis, ortholog; 2.25A {Mycobacterium marinum} Length = 277

 Score =  125 bits (317), Expect = 2e-35
 Identities = 36/138 (26%), Positives = 62/138 (44%), Gaps = 5/138 (3%)

Query: 64  SGTEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTG 123
            G+    +       +G+A + ++RP   NA      +E++ A ++      +G ++L G
Sbjct: 19  PGSMNEFVSVVAD--QGLATLVVSRPPT-NAMTRQVYREIVAAADELGRRDDIGAVVLFG 75

Query: 124 KGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVL 183
            G E F +G D          + +   R   L+    +  +PKP +A V GYA+G G  L
Sbjct: 76  -GHEIFSAGDDMPELRTLNAPEADTAAR-VRLEAIDAVAAIPKPTVAAVTGYALGAGLTL 133

Query: 184 HMVCDLTIAADNAIFGQT 201
            +  D  ++ DN  FG T
Sbjct: 134 ALAADWRVSGDNVKFGAT 151

>2np9_A DPGC; protein inhibitor complex, oxidoreductase; HET: YE1; 2.45A {Streptomyces toyocaensis} PDB: 2pg8_A* Length = 440

 Score =  127 bits (320), Expect = 1e-34
 Identities = 47/182 (25%), Positives = 72/182 (39%), Gaps = 26/182 (14%)

Query: 63  ESGTEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILT 122
               E   +  E+   +G+A++T+ R DR NA     V ++  A + A  D  V V +L 
Sbjct: 161 TGEVEMEAVHLERR--DGVARLTMCRDDRLNAEDGQQVDDMETAVDLALLDPGVRVGLLR 218

Query: 123 G--------KGTEAFCSGGD-------------QALRTRDGYADYENFGRLNVLDLQV-- 159
           G        +G   F +G +               +R   GY      G L   D     
Sbjct: 219 GGVMSHPRYRGKRVFSAGINLKYLSQGGISLVDFLMRRELGYIHKLVRGVLTNDDRPGWW 278

Query: 160 QIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSR 219
              R+ KP +A V G+A+GGG  L +V D  +A+ +A F     K G    G  +  + R
Sbjct: 279 HSPRIEKPWVAAVDGFAIGGGAQLLLVFDRVLASSDAYFSLPAAKEGII-PGAANLRLGR 337

Query: 220 LV 221
             
Sbjct: 338 FA 339

>1dci_A Dienoyl-COA isomerase; lyase; 1.50A {Rattus norvegicus} SCOP: c.14.1.3 PDB: 2vre_A Length = 275

 Score =  122 bits (308), Expect = 5e-34
 Identities = 37/134 (27%), Positives = 57/134 (42%), Gaps = 11/134 (8%)

Query: 77  VGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGD-- 134
             + +  + +NRP++RNA      +EL+  F     DS    ++++G G + F SG D  
Sbjct: 10  AQKHVLHVQLNRPEKRNAMNRAFWRELVECFQKISKDSDCRAVVVSGAG-KMFTSGIDLM 68

Query: 135 -----QALRTRDGYADYENFGRLNVLDLQV---QIRRLPKPVIAMVAGYAVGGGHVLHMV 186
                      D  A    + R  +   Q     I + PKPVIA + G  +GGG  L   
Sbjct: 69  DMASDILQPPGDDVARIAWYLRDLISRYQKTFTVIEKCPKPVIAAIHGGCIGGGVDLISA 128

Query: 187 CDLTIAADNAIFGQ 200
           CD+     +A F  
Sbjct: 129 CDIRYCTQDAFFQV 142

>1sg4_A 3,2-trans-enoyl-COA isomerase, mitochondrial; crotonase fold; HET: CO8; 1.30A {Homo sapiens} SCOP: c.14.1.3 PDB: 1xx4_A Length = 260

 Score =  121 bits (307), Expect = 6e-34
 Identities = 30/132 (22%), Positives = 56/132 (42%), Gaps = 4/132 (3%)

Query: 71  IIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFC 130
           ++ E   G G+A +    P   N+     + EL+ +     +D S   +ILT      F 
Sbjct: 5   VLVEPDAGAGVAVMKFKNP-PVNSLSLEFLTELVISLEKLENDKSFRGVILTSDRPGVFS 63

Query: 131 SGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLT 190
           +G D         A Y  + +  V +L +++ +    +++ + G    GG ++ + CD  
Sbjct: 64  AGLDLTEMCGRSPAHYAGYWKA-VQELWLRLYQSNLVLVSAINGACPAGGCLVALTCDYR 122

Query: 191 IAADNAIF--GQ 200
           I ADN  +  G 
Sbjct: 123 ILADNPRYCIGL 134

>3r6h_A Enoyl-COA hydratase, ECHA3; ssgcid, mycobacerium marinum, structura genomics, seattle structural genomics center for infectious lyase; 1.75A {Mycobacterium marinum M} Length = 233

 Score =  118 bits (299), Expect = 3e-33
 Identities = 30/151 (19%), Positives = 54/151 (35%), Gaps = 6/151 (3%)

Query: 71  IIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFC 130
           + Y     + I  I ++   + N   P   + L  A + A  D+ VG +++ G     F 
Sbjct: 7   VTYTHD--DAIGVIRMDDG-KVNVLGPTMQQALNEAIDAADRDN-VGALVIAGNH-RVFS 61

Query: 131 SGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLT 190
            G D  + T        +  R    +L  ++   PKPV+    G+A+  G  L    D  
Sbjct: 62  GGFDLKVLTSGEAKPAIDMLR-GGFELSYRLLSYPKPVVIACTGHAIAMGAFLLCSGDHR 120

Query: 191 IAADNAIFGQTGPKVGSFDAGYGSSIMSRLV 221
           +AA           +G         ++   +
Sbjct: 121 VAAHAYNVQANEVAIGMTIPYAAMEVLKLRL 151

>3m6n_A RPFF protein; enoyl-COA hydratase, lyase; 1.80A {Xanthomonas campestris PV} PDB: 3m6m_A Length = 305

 Score =  111 bits (279), Expect = 1e-29
 Identities = 33/197 (16%), Positives = 60/197 (30%), Gaps = 19/197 (9%)

Query: 40  NDSYHRIHGEVPSHDVVWRIACDESGTEFTDIIYEKAVGEGIAKITINRPDR----RNAF 95
           +  +H    +  S   V +     +      II E      +  I ++        R  F
Sbjct: 4   SHHHHHHSQDPNSMSAV-QPFIRTNIGSTLRIIEEPQ--RDVYWIHMHADLAINPGRACF 60

Query: 96  RPHTVKELIRAFN----DARDDSSVGVIILTGKGTEAFCSGGD----QALRTRDGYADYE 147
               V ++                +   ++    ++ F  GGD      L      A   
Sbjct: 61  STRLVDDITGYQTNLGQRLNTAGVLAPHVVLASDSDVFNLGGDLALFCQLIREGDRARLL 120

Query: 148 NFGR--LNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKV 205
           ++ +  +  +             IA+V G A+GGG    + C   IA +  + G      
Sbjct: 121 DYAQRCVRGVHAFHVGLGARAHSIALVQGNALGGGFEAALSCHTIIAEEGVMMGLPEVLF 180

Query: 206 GSFDAGYG-SSIMSRLV 221
             F  G G  S M + +
Sbjct: 181 DLF-PGMGAYSFMCQRI 196

>3ot6_A Enoyl-COA hydratase/isomerase family protein; structural genomics, PSI-2, protein structure initiative; 2.50A {Pseudomonas syringae PV} Length = 232

 Score =  108 bits (271), Expect = 4e-29
 Identities = 33/152 (21%), Positives = 57/152 (37%), Gaps = 9/152 (5%)

Query: 71  IIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFC 130
           + Y     +G+A +T+N   + NA  P  +     A + A  D    ++I+TG+      
Sbjct: 8   VSYHLD--DGVATLTLNNG-KVNAISPDVIIAFNAALDQAEKD--RAIVIVTGQPG-ILS 61

Query: 131 SGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLT 190
            G D  + T    A      + +   L  ++   P P+I    G+AV  G  L +  D  
Sbjct: 62  GGYDLKVMTSSAEAAINLVAQGS--TLARRMLSHPFPIIVACPGHAVAKGAFLLLSADYR 119

Query: 191 IA-ADNAIFGQTGPKVGSFDAGYGSSIMSRLV 221
           I  A     G    ++G      G  +    +
Sbjct: 120 IGVAGPFSIGLNEVQIGMTMHHAGIELARDRL 151

>2w3p_A Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ring cleaving, burkholderia xenovorans LB400 crotonase; 1.50A {Burkholderia xenovorans} Length = 556

 Score =  106 bits (266), Expect = 1e-26
 Identities = 31/172 (18%), Positives = 55/172 (31%), Gaps = 18/172 (10%)

Query: 58  RIACDESGTEFTDIIYEKAVGEGIAKITINRPDRR----------NAFRPHTVKELIRAF 107
            +      +++            +A + I+  +            N++      EL  A 
Sbjct: 10  PVDYRTDPSQYKHWKLS--FNGPVATLGIDIAEDGGIRDGYKLKLNSYDLGVDIELHDAI 67

Query: 108 NDAR-DDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRL---NVLDLQVQIRR 163
              R +   V  ++LT      FCSG +  +     +A   NF +        L+   R 
Sbjct: 68  QRIRFEHPEVRTVVLTSLKDRVFCSGANIFMLGLSTHAWKVNFCKFTNETRNGLEDSSRH 127

Query: 164 LPKPVIAMVAGYAVGGGHVLHMVCDLTIAAD--NAIFGQTGPKVGSFDAGYG 213
                +A V G   GGG+ L + CD     D  ++        +     G G
Sbjct: 128 SGLKFLAAVNGACAGGGYELALACDEIYLVDDRSSSVSLPEVPLLGVLPGTG 179

>3bpt_A 3-hydroxyisobutyryl-COA hydrolase; coenzyme A, beta-hydroxyisobutyryl acid, querceti structural genomics consortium, SGC; HET: QUE; 1.50A {Homo sapiens} Length = 363

 Score = 82.4 bits (204), Expect = 1e-18
 Identities = 39/149 (26%), Positives = 63/149 (42%), Gaps = 14/149 (9%)

Query: 80  GIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGD-QALR 138
               IT+NRP   NA   + ++++         D    +II+ G G +AFC+GGD + + 
Sbjct: 15  CTGVITLNRPKFLNALTLNMIRQIYPQLKKWEQDPETFLIIIKGAGGKAFCAGGDIRVIS 74

Query: 139 --TRDGYADYENFGR----LNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIA 192
              +        F R    LN       +    KP +A++ G  +GGG  L +     +A
Sbjct: 75  EAEKAKQKIAPVFFREEYMLNNA-----VGSCQKPYVALIHGITMGGGVGLSVHGQFRVA 129

Query: 193 ADNAIFGQTGPKVGSF-DAGYGSSIMSRL 220
            +  +F      +G F D G G   + RL
Sbjct: 130 TEKCLFAMPETAIGLFPDVG-GGYFLPRL 157

>3ju1_A Enoyl-COA hydratase/isomerase family protein; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; HET: MSE; 2.30A {Shewanella oneidensis} Length = 407

 Score = 81.3 bits (201), Expect = 4e-18
 Identities = 40/201 (19%), Positives = 77/201 (38%), Gaps = 16/201 (7%)

Query: 32  IGLNNASMNDSYHRIHGEVPSHDVVWRIACDESGTEFTDIIYEK---AVGEGIAKITINR 88
           +G ++   + S  R +     H          S     +++++    A G+ +  +T+N 
Sbjct: 1   MGSSHHHHHHSSGRENLYFQGHMTNLVDKAAHSFAT-QNVVFQTLATASGKLVGVVTLNV 59

Query: 89  PDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGD------QALRTRDG 142
               NA     V+ +    N  + D  +  ++L G G +AFC+GGD       ++  +  
Sbjct: 60  EKALNALDLDMVRAMTVQLNLWKKDPLIACVVLDGSGEKAFCAGGDVRALYHASVAAKGQ 119

Query: 143 YADY--ENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQ 200
             +     F     LD    +    KPV+    G  +GGG  L       +  + +    
Sbjct: 120 VTEVAKVFFEEEYRLDY--LLHTYGKPVLVWGDGIVMGGGLGLMAGASHKVVTETSRIAM 177

Query: 201 TGPKVGSF-DAGYGSSIMSRL 220
               +G + D G GS  ++R+
Sbjct: 178 PEVTIGLYPDVG-GSYFLNRM 197

>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana} Length = 725

 Score = 78.1 bits (193), Expect = 9e-17
 Identities = 32/135 (23%), Positives = 55/135 (40%), Gaps = 9/135 (6%)

Query: 69  TDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEA 128
              + E   G+G+A IT+  P   N+     +  L   + +A   + V  I++TG     
Sbjct: 7   GKTVMEV-GGDGVAVITLINP-PVNSLSFDVLYNLKSNYEEALSRNDVKAIVITGAK-GR 63

Query: 129 FCSGGD----QALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLH 184
           F  G D      ++  +       +  ++   +   +    KP +A + G A+GGG  L 
Sbjct: 64  FSGGFDISGFGEMQKGNVKEPKAGYISID--IITDLLEAARKPSVAAIDGLALGGGLELA 121

Query: 185 MVCDLTIAADNAIFG 199
           M C   I+A  A  G
Sbjct: 122 MACHARISAPAAQLG 136

>1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A* Length = 715

 Score = 76.9 bits (190), Expect = 2e-16
 Identities = 30/131 (22%), Positives = 51/131 (38%), Gaps = 10/131 (7%)

Query: 75  KAVGEGIAKITINRPDRR-NAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGG 133
            A+  GI ++  +      N F   T+ EL +A +  + D+SV  +I++    + F  G 
Sbjct: 11  TALESGIVELKFDLKGESVNKFNRLTLNELRQAVDAIKADASVKGVIVSSGK-DVFIVGA 69

Query: 134 D----QALRTRDGYADYENFGRLN-VLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCD 188
           D                      N +         L  P +A + G A+GGG  + +  D
Sbjct: 70  DITEFVENFKLPDAELIAGNLEANKIFS---DFEDLNVPTVAAINGIALGGGLEMCLAAD 126

Query: 189 LTIAADNAIFG 199
             + AD+A  G
Sbjct: 127 FRVMADSAKIG 137

>3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A* Length = 742

 Score = 70.0 bits (172), Expect = 5e-14
 Identities = 35/138 (25%), Positives = 53/138 (38%), Gaps = 17/138 (12%)

Query: 66  TEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKG 125
              + +     +   +A I +  P   NA  P  ++E+      A  D +V  I++ G  
Sbjct: 16  PRGSHMAEYLRLPHSLAMIRLCNP-PVNAVSPTVIREVRNGLQKAGSDHTVKAIVICGAN 74

Query: 126 TEAFCSGGDQALRTRDGYADYENFGRLNV-LDLQVQIRRL---PKPVIAMVAGYAVGGGH 181
              FC+G           AD   F      L L   +  +    KPV+A + G A+GGG 
Sbjct: 75  -GNFCAG-----------ADIHGFSAFTPGLALGSLVDEIQRYQKPVLAAIQGVALGGGL 122

Query: 182 VLHMVCDLTIAADNAIFG 199
            L + C   IA   A  G
Sbjct: 123 ELALGCHYRIANAKARVG 140

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	240
3hrx_A	254	Probable enoyl-COA hydratase; the spiral fold, the	100.0
4fzw_C	274	1,2-epoxyphenylacetyl-COA isomerase; structural ge	100.0
4fzw_A	258	2,3-dehydroadipyl-COA hydratase; structural genomi	100.0
3pea_A	261	Enoyl-COA hydratase/isomerase family protein; stru	100.0
3kqf_A	265	Enoyl-COA hydratase/isomerase family protein; IDP0	100.0
3t8b_A	334	1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase	100.0
4eml_A	275	Naphthoate synthase; 1,4-dihydroxy-2-naphthoyl-coe	100.0
3t89_A	289	1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase	100.0
3fdu_A	266	Putative enoyl-COA hydratase/isomerase; structural	100.0
3hin_A	275	Putative 3-hydroxybutyryl-COA dehydratase; structu	100.0
4hdt_A	353	3-hydroxyisobutyryl-COA hydrolase; ssgcid, carniti	100.0
3lke_A	263	Enoyl-COA hydratase; nysgrc, target 112 structural	100.0
3i47_A	268	Enoyl COA hydratase/isomerase (crotonase); structu	100.0
3gkb_A	287	Putative enoyl-COA hydratase; structural genomics,	100.0
3qmj_A	256	Enoyl-COA hydratase, ECHA8_6; ssgcid, NIH, niaid,	100.0
2uzf_A	273	Naphthoate synthase; lyase, menaquinone biosynthes	100.0
3gow_A	254	PAAG, probable enoyl-COA hydratase; the spiral fol	100.0
3g64_A	279	Putative enoyl-COA hydratase; alpha-beta structure	100.0
2ej5_A	257	Enoyl-COA hydratase subunit II; structural genomic	100.0
4di1_A	277	Enoyl-COA hydratase ECHA17; structural genomics, s	100.0
3he2_A	264	Enoyl-COA hydratase ECHA6; fatty acid metabolism,	100.0
3sll_A	290	Probable enoyl-COA hydratase/isomerase; structural	100.0
3lao_A	258	Enoyl-COA hydratase/isomerase; alpha-beta sandwich	100.0
3p5m_A	255	Enoyl-COA hydratase/isomerase; seattle structural	100.0
2j5i_A	276	P-hydroxycinnamoyl COA hydratase/lyase; vanillin,	100.0
1nzy_A	269	Dehalogenase, 4-chlorobenzoyl coenzyme A dehalogen	100.0
2f6q_A	280	Peroxisomal 3,2-trans-enoyl-COA isomerase; peroxis	100.0
3r9q_A	262	Enoyl-COA hydratase/isomerase; ssgcid, lyase,isome	100.0
3qxz_A	265	Enoyl-COA hydratase/isomerase; structural genomics	100.0
3qre_A	298	Enoyl-COA hydratase, ECHA12_1; structural genomics	100.0
2pbp_A	258	Enoyl-COA hydratase subunit I; B-oxidation, struct	100.0
3h81_A	278	Enoyl-COA hydratase ECHA8; niaid, decode, infectio	100.0
3hp0_A	267	Putative polyketide biosynthesis enoyl-COA hydrata	100.0
3moy_A	263	Probable enoyl-COA hydratase; ssgcid, seattle stru	100.0
2a7k_A	250	CARB; crotonase, antibiotic, beta-lactam, biosynth	100.0
3rrv_A	276	Enoyl-COA hydratase/isomerase; structural genomics	100.0
2vx2_A	287	Enoyl-COA hydratase domain-containing protein 3; i	100.0
1pjh_A	280	Enoyl-COA isomerase; ECI1P; beta-BETA-alpha spiral	100.0
3njd_A	333	Enoyl-COA hydratase; ssgcid, mycobacerium smegmati	100.0
3h0u_A	289	Putative enoyl-COA hydratase; structural genomics,	100.0
2ppy_A	265	Enoyl-COA hydratase; beta-oxidation, fatty acid me	100.0
3r9t_A	267	ECHA1_1; ssgcid, seattle structural genomics cente	100.0
3myb_A	286	Enoyl-COA hydratase; ssgcid, struct genomics, seat	100.0
4f47_A	278	Enoyl-COA hydratase ECHA19; ssgcid, seattle struct	100.0
1ef8_A	261	Methylmalonyl COA decarboxylase; lyase; 1.85A {Esc	100.0
3swx_A	265	Probable enoyl-COA hydratase/isomerase; structural	100.0
3l3s_A	263	Enoyl-COA hydratase/isomerase family protein; crot	100.0
3pe8_A	256	Enoyl-COA hydratase; emerald biostructures, struct	100.0
1hzd_A	272	AUH, AU-binding protein/enoyl-COA hydratase; RNA-b	100.0
1dci_A	275	Dienoyl-COA isomerase; lyase; 1.50A {Rattus norveg	100.0
3rsi_A	265	Putative enoyl-COA hydratase/isomerase; structural	100.0
3tlf_A	274	Enoyl-COA hydratase/isomerase; structural genomics	100.0
3r6h_A	233	Enoyl-COA hydratase, ECHA3; ssgcid, mycobacerium m	100.0
3qk8_A	272	Enoyl-COA hydratase ECHA15; ssgcid, NIH, niaid, SB	100.0
2fbm_A	291	Y chromosome chromodomain protein 1, telomeric IS;	100.0
3oc7_A	267	Enoyl-COA hydratase; seattle structural genomics c	100.0
2gtr_A	261	CDY-like, chromodomain Y-like protein; structural	100.0
1wz8_A	264	Enoyl-COA hydratase; lyase, crotonase, hexamer, st	100.0
3isa_A	254	Putative enoyl-COA hydratase/isomerase; structural	100.0
2j5g_A	263	ALR4455 protein; enzyme evolution, C-C bond hydrol	100.0
3t3w_A	279	Enoyl-COA hydratase; ssgcid, structural genomics,	100.0
1szo_A	257	6-oxocamphor hydrolase; enzyme-product complex; HE	100.0
3bpt_A	363	3-hydroxyisobutyryl-COA hydrolase; coenzyme A, bet	100.0
1sg4_A	260	3,2-trans-enoyl-COA isomerase, mitochondrial; crot	100.0
3qxi_A	265	Enoyl-COA hydratase ECHA1; structural genomics, se	100.0
2q35_A	243	CURF; crotonase, lyase; 1.65A {Lyngbya majuscula}	100.0
1uiy_A	253	Enoyl-COA hydratase; lyase, beta-oxidation, croton	100.0
3ju1_A	407	Enoyl-COA hydratase/isomerase family protein; alph	100.0
3trr_A	256	Probable enoyl-COA hydratase/isomerase; ssgcid, st	100.0
3m6n_A	305	RPFF protein; enoyl-COA hydratase, lyase; 1.80A {X	100.0
3ot6_A	232	Enoyl-COA hydratase/isomerase family protein; stru	100.0
1mj3_A	260	Enoyl-COA hydratase, mitochondrial; homohexamer, l	100.0
2np9_A	440	DPGC; protein inhibitor complex, oxidoreductase; H	100.0
3zwc_A	742	Peroxisomal bifunctional enzyme; beta oxidation pa	100.0
2w3p_A	556	Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ri	100.0
1wdk_A	715	Fatty oxidation complex alpha subunit; alpha2BETA2	100.0
2wtb_A	725	MFP2, fatty acid multifunctional protein (ATMFP2);	100.0
3bf0_A	593	Protease 4; bacterial, hydrolase, inner membrane,	99.76
3rst_A	240	Signal peptide peptidase SPPA; alpha/beta protein	99.67
3viv_A	230	441AA long hypothetical NFED protein; protein-pept	99.66
2f9y_B	304	Acetyl-coenzyme A carboxylase carboxyl transferas	99.26
1y7o_A	218	ATP-dependent CLP protease proteolytic subunit; hy	99.21
2f9i_A	327	Acetyl-coenzyme A carboxylase carboxyl transferase	99.06
2f9y_A	339	Acetyl-COA carboxylase, carboxyltransferase alpha;	99.02
2cby_A	208	ATP-dependent CLP protease proteolytic subunit 1;	98.07
1yg6_A	193	ATP-dependent CLP protease proteolytic subunit; en	97.63
3qwd_A	203	ATP-dependent CLP protease proteolytic subunit; ca	97.6
2f6i_A	215	ATP-dependent CLP protease, putative; structural g	97.44
3p2l_A	201	ATP-dependent CLP protease proteolytic subunit; st	97.25
1pix_A	587	Glutaconyl-COA decarboxylase A subunit; biotin-dep	97.19
1tg6_A	277	Putative ATP-dependent CLP protease proteolytic S;	97.06
1on3_A	523	Methylmalonyl-COA carboxyltransferase 12S subunit;	96.62
3iav_A	530	Propionyl-COA carboxylase complex B subunit; accas	96.61
2bzr_A	548	Propionyl-COA carboxylase beta chain 5; fatty acid	96.46
1x0u_A	522	Hypothetical methylmalonyl-COA decarboxylase ALPH;	96.36
2f9i_B	285	Acetyl-coenzyme A carboxylase carboxyl transferase	96.34
3n6r_B	531	Propionyl-COA carboxylase, beta subunit; protein c	96.22
3bf0_A	593	Protease 4; bacterial, hydrolase, inner membrane,	96.19
1vrg_A	527	Propionyl-COA carboxylase, beta subunit; TM0716, s	95.74
1x0u_A	522	Hypothetical methylmalonyl-COA decarboxylase ALPH;	95.62
3gf3_A	588	Glutaconyl-COA decarboxylase subunit A; sodium ION	95.33
3u9r_B	555	MCC beta, methylcrotonyl-COA carboxylase, beta-sub	95.23
4gm2_A	205	ATP-dependent CLP protease proteolytic subunit; st	94.8
2bzr_A	548	Propionyl-COA carboxylase beta chain 5; fatty acid	94.1
1vrg_A	527	Propionyl-COA carboxylase, beta subunit; TM0716, s	94.01
3iav_A	530	Propionyl-COA carboxylase complex B subunit; accas	93.88
3k8x_A	758	Acetyl-COA carboxylase; transferase, carboxyltrans	93.73
1on3_A	523	Methylmalonyl-COA carboxyltransferase 12S subunit;	93.57
3n6r_B	531	Propionyl-COA carboxylase, beta subunit; protein c	93.47
2x24_A	793	Acetyl-COA carboxylase; fatty acid biosynthesis, l	92.47
2w3p_A	556	Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ri	91.76
3u9r_B	555	MCC beta, methylcrotonyl-COA carboxylase, beta-sub	90.4
1pix_A	587	Glutaconyl-COA decarboxylase A subunit; biotin-dep	89.43
3k8x_A	758	Acetyl-COA carboxylase; transferase, carboxyltrans	84.43
2x24_A	793	Acetyl-COA carboxylase; fatty acid biosynthesis, l	82.84

>3hrx_A Probable enoyl-COA hydratase; the spiral fold, the crotonase superfamily, lyase; 1.85A {Thermus thermophilus}

Probab=100.00  E-value=2.3e-46  Score=322.47  Aligned_cols=163  Identities=26%  Similarity=0.359  Sum_probs=148.6

Q ss_pred             EEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccchhhhh
Q 026342           71 IIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFG  150 (240)
Q Consensus        71 v~~~~~~~~~v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~~~~~  150 (240)
                      |++|+  +|+|++||||||+++|+||.+|+.+|.++|+++++|+++|+|||||.| ++||+|+|++++....... ....
T Consensus         2 vl~E~--~dgVa~itlnrP~~~NAl~~~m~~~L~~al~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~~~-~~~~   77 (254)
T 3hrx_A            2 VLKER--QDGVLVLTLNRPEKLNAITGELLDALYAALKEGEEDREVRALLLTGAG-RAFSAGQDLTEFGDRKPDY-EAHL   77 (254)
T ss_dssp             EEEEE--ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEEST-TCSBCCBCGGGTTTSCCCH-HHHT
T ss_pred             eEEEE--ECCEEEEEEcCCCcCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEeCCC-CCcccCccHHHhcccchhh-HHHH
Confidence            67787  799999999999999999999999999999999999999999999999 8999999999875433222 2222


Q ss_pred             hhhHHHHHHHHHcCCCcEEEEECchhchhhHHHhhhcCEEEEeCCcEEecccccccccCCCchHHHHHhhcCHHHHHHHH
Q 026342          151 RLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVSTVQQCLWW  230 (240)
Q Consensus       151 ~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~a~f~~pe~~~Gl~p~~g~~~~l~rlvG~~~a~ell  230 (240)
                      . .+..++..|.++||||||+|||+|+|||++|+++||||||+++++|++||+++|++|++|++++|+|++|.++|++|+
T Consensus        78 ~-~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~lGl~p~~g~~~~L~r~vG~~~A~~ll  156 (254)
T 3hrx_A           78 R-RYNRVVEALSGLEKPLVVAVNGVAAGAGMSLALWGDLRLAAVGASFTTAFVRIGLVPDSGLSFLLPRLVGLAKAQELL  156 (254)
T ss_dssp             H-HHHHHHHHHHTCSSCEEEEECSEEETHHHHHHTTCSEEEEETTCEEECCGGGGTCCCCTTHHHHHHHHHCHHHHHHHH
T ss_pred             H-HHHHHHHHHHhCCCCEEEEECCEeeehhhhhhhccceeeEcCCCEEEchhhCcCcCCcccHHHHHHHHhCcchHHHHh
Confidence            2 356778899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCCcccc
Q 026342          231 GLKKHVKC  238 (240)
Q Consensus       231 ltG~~i~A  238 (240)
                      +||+.|+|
T Consensus       157 ltg~~i~A  164 (254)
T 3hrx_A          157 LLSPRLSA  164 (254)
T ss_dssp             HHCCCEEH
T ss_pred             hcCcccCH
Confidence            99999986

>4fzw_C 1,2-epoxyphenylacetyl-COA isomerase; structural genomics, montreal-kingston bacterial structural initiative, BSGI, crotonase fold; 2.55A {Escherichia coli}

Probab=100.00  E-value=1.6e-45  Score=320.70  Aligned_cols=171  Identities=27%  Similarity=0.403  Sum_probs=145.8

Q ss_pred             CCcceeEEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCcc
Q 026342           65 GTEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYA  144 (240)
Q Consensus        65 ~~~~~~v~~~~~~~~~v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~  144 (240)
                      +..++.|.++.  ++||++||||||+++|+||.+|+.+|.++|+++++|++||+|||||.| ++||+|+|++++......
T Consensus        11 GsM~e~il~~~--~~gVa~itlnRP~~~NAl~~~m~~~L~~al~~~~~d~~vr~vVltg~G-~~FcaG~Dl~~~~~~~~~   87 (274)
T 4fzw_C           11 GSMMEFILSHV--EKGVMTLTLNRPERLNSFNDEMHAQLAECLKQVERDDTIRCLLLTGAG-RGFCAGQDLNDRNVDPTG   87 (274)
T ss_dssp             -----CEEEEE--ETTEEEEEECCTTTTSCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESS-SCSBCCBCCC--------
T ss_pred             ccccccEEEEE--ECCEEEEEEcCcCccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCC-CceeCCcChHhhhccccc
Confidence            55667788887  799999999999999999999999999999999999999999999999 899999999876432221


Q ss_pred             ---chhhhhhhhHHHHHHHHHcCCCcEEEEECchhchhhHHHhhhcCEEEEeCCcEEecccccccccCCCchHHHHHhhc
Q 026342          145 ---DYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLV  221 (240)
Q Consensus       145 ---~~~~~~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~a~f~~pe~~~Gl~p~~g~~~~l~rlv  221 (240)
                         +........+..++..|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++
T Consensus        88 ~~~~~~~~~~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~v  167 (274)
T 4fzw_C           88 PAPDLGMSVERFYNPLVRRLAKLPKPVICAVNGVAAGAGATLALGGDIVIAARSAKFVMAFSKLGLIPDCGGTWLLPRVA  167 (274)
T ss_dssp             -CCCHHHHHHHTHHHHHHHHHHCSSCEEEEECSCEETHHHHHHHTSSEEEEETTCEEECCGGGTTCCCTTTHHHHHHHHT
T ss_pred             cchHHHHHHHHHHHHHHHHHHHCCCCEEEEECCceeecCceeeeccceEEECCCCEEECcccCcccCCCccHHHHHHHHh
Confidence               11111122355678899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHhcCCcccc
Q 026342          222 STVQQCLWWGLKKHVKC  238 (240)
Q Consensus       222 G~~~a~ellltG~~i~A  238 (240)
                      |..+|++|++||+.|+|
T Consensus       168 G~~~A~~llltg~~i~A  184 (274)
T 4fzw_C          168 GRARAMGLALLGNQLSA  184 (274)
T ss_dssp             CHHHHHHHHHHCCCEEH
T ss_pred             hHHHHHHHHHhCCcCCH
Confidence            99999999999999986

>4fzw_A 2,3-dehydroadipyl-COA hydratase; structural genomics, montreal-kingston bacterial structural initiative, BSGI, crotonase fold; 2.55A {Escherichia coli}

Probab=100.00  E-value=1.7e-45  Score=317.89  Aligned_cols=166  Identities=25%  Similarity=0.435  Sum_probs=149.3

Q ss_pred             cceeEEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccch
Q 026342           67 EFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADY  146 (240)
Q Consensus        67 ~~~~v~~~~~~~~~v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~  146 (240)
                      .+++|.+++  +++|++||||||+++|+||.+|+.+|.+++++++.|+++|+|||||.| ++||+|+|++++......  
T Consensus         3 ~ms~l~ve~--~~~Va~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g-~~FcaG~Dl~~~~~~~~~--   77 (258)
T 4fzw_A            3 SMSELIVSR--QQRVLLLTLNRPAARNALNNALLMQLVNELEAAATDTSISVCVITGNA-RFFAAGADLNEMAEKDLA--   77 (258)
T ss_dssp             --CEEEEEE--ETTEEEEEEECGGGTTCBCHHHHHHHHHHHHHHHTCTTCCEEEEECCS-SEEEECBCHHHHHTCCHH--
T ss_pred             CCCcEEEEE--ECCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhhCCCeEEEEEeCCC-CceeCCCchhhhccchhh--
Confidence            456789998  799999999999999999999999999999999999999999999999 899999999876543221  


Q ss_pred             hhhhhhhHHHHHHHHHcCCCcEEEEECchhchhhHHHhhhcCEEEEeCCcEEecccccccccCCCchHHHHHhhcCHHHH
Q 026342          147 ENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVSTVQQ  226 (240)
Q Consensus       147 ~~~~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~a~f~~pe~~~Gl~p~~g~~~~l~rlvG~~~a  226 (240)
                      ... ......++.++.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..+|
T Consensus        78 ~~~-~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~A  156 (258)
T 4fzw_A           78 ATL-NDTRPQLWARLQAFNKPLIAAVNGYALGAGCELALLCDVVVAGENARFGLPEITLGIMPGAGGTQRLIRSVGKSLA  156 (258)
T ss_dssp             HHH-TCSHHHHHHHHHTCCSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCGGGGTCCCCSSHHHHHHHHHCHHHH
T ss_pred             hHH-HhHHHHHHHHHHHCCCCEEEEEcCcceeeeeEeecccceEEECCCCEEECcccCCCcCCCchHHHHHHHHhCHHHH
Confidence            111 1134567889999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCcccc
Q 026342          227 CLWWGLKKHVKC  238 (240)
Q Consensus       227 ~ellltG~~i~A  238 (240)
                      ++|++||+.|+|
T Consensus       157 ~~llltg~~i~a  168 (258)
T 4fzw_A          157 SKMVLSGESITA  168 (258)
T ss_dssp             HHHHHHCCCEEH
T ss_pred             HHHHHcCCcCcH
Confidence            999999999986

>3pea_A Enoyl-COA hydratase/isomerase family protein; structural genomics, center for structural genomics of infec diseases, csgid; HET: FLC PG4; 1.82A {Bacillus anthracis}

Probab=100.00  E-value=6e-44  Score=308.68  Aligned_cols=168  Identities=21%  Similarity=0.291  Sum_probs=149.4

Q ss_pred             cceeEEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccch
Q 026342           67 EFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADY  146 (240)
Q Consensus        67 ~~~~v~~~~~~~~~v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~  146 (240)
                      .++.|.+++  +++|++|+||||++ |+||.+|+.+|.++++.++.|+++|+|||+|.| ++||+|+|++++........
T Consensus         4 m~~~v~~~~--~~~v~~itlnrp~~-Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~~~~   79 (261)
T 3pea_A            4 MLKFLSVRV--EDHIAVATLNHAPA-NAMSSQVMHDVTELIDQVEKDDNIRVVVIHGEG-RFFSAGADIKEFTSVTEAKQ   79 (261)
T ss_dssp             CCSSEEEEE--ETTEEEEEECCTTT-TCBCHHHHHHHHHHHHHHHHCTTCCEEEEEEST-TCSBCCBCGGGSSTTCCHHH
T ss_pred             cccceEEEE--ECCEEEEEECCCCC-CCCCHHHHHHHHHHHHHHHhCCCceEEEEECCC-CceeCCcCHHHHhhcCchhH
Confidence            356788888  79999999999998 999999999999999999999999999999999 89999999998754322111


Q ss_pred             hhhhhhhHHHHHHHHHcCCCcEEEEECchhchhhHHHhhhcCEEEEeCCcEEecccccccccCCCchHHHHHhhcCHHHH
Q 026342          147 ENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVSTVQQ  226 (240)
Q Consensus       147 ~~~~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~a~f~~pe~~~Gl~p~~g~~~~l~rlvG~~~a  226 (240)
                      ..........++.++.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|..+|
T Consensus        80 ~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~a  159 (261)
T 3pea_A           80 ATELAQLGQVTFERVEKCSKPVIAAIHGAALGGGLEFAMSCHMRFATESAKLGLPELTLGLIPGFAGTQRLPRYVGKAKA  159 (261)
T ss_dssp             HHHHHHHHHHHHHHHHTCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCGGGGTCCCCSSHHHHHHHHHCHHHH
T ss_pred             HHHHHHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEcCCCEEECcccccCcCCCccHHHHHHHHhCHHHH
Confidence            11111123457788999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCcccc
Q 026342          227 CLWWGLKKHVKC  238 (240)
Q Consensus       227 ~ellltG~~i~A  238 (240)
                      ++|+++|+.|+|
T Consensus       160 ~~l~ltg~~~~a  171 (261)
T 3pea_A          160 CEMMLTSTPITG  171 (261)
T ss_dssp             HHHHHHCCCEEH
T ss_pred             HHHHHcCCCCCH
Confidence            999999999986

>3kqf_A Enoyl-COA hydratase/isomerase family protein; IDP02329, structural genomic for structural genomics of infectious diseases, csgid; HET: MSE; 1.80A {Bacillus anthracis}

Probab=100.00  E-value=2.7e-44  Score=311.52  Aligned_cols=169  Identities=25%  Similarity=0.433  Sum_probs=151.4

Q ss_pred             cceeEEEE-EEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccc
Q 026342           67 EFTDIIYE-KAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYAD  145 (240)
Q Consensus        67 ~~~~v~~~-~~~~~~v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~  145 (240)
                      +|+.|.++ .  +++|++|+||||+++|+||.+|+.+|.+++++++.|+++|+|||+|.|+++||+|+|++++.......
T Consensus         6 ~~~~v~~~~~--~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~   83 (265)
T 3kqf_A            6 QLQNISVDYA--TPHVVKISLNRERQANSLSLALLEELQNILTQINEEANTRVVILTGAGEKAFCAGADLKERAGMNEEQ   83 (265)
T ss_dssp             -CCSEEEECC--STTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHTCTTCCEEEEEESSSSEEECCBCHHHHTTCCHHH
T ss_pred             cCCeEEEEEe--eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCeeeeCcChHHHhccCHHH
Confidence            46778998 6  79999999999999999999999999999999999999999999999978999999999875432221


Q ss_pred             hhhhhhhhHHHHHHHHHcCCCcEEEEECchhchhhHHHhhhcCEEEEeCCcEEecccccccccCCCchHHHHHhhcCHHH
Q 026342          146 YENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVSTVQ  225 (240)
Q Consensus       146 ~~~~~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~a~f~~pe~~~Gl~p~~g~~~~l~rlvG~~~  225 (240)
                      ...+.. ...+++.++.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|..+
T Consensus        84 ~~~~~~-~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~  162 (265)
T 3kqf_A           84 VRHAVS-MIRTTMEMVEQLPQPVIAAINGIALGGGTELSLACDFRIAAESASLGLTETTLAIIPGAGGTQRLPRLIGVGR  162 (265)
T ss_dssp             HHHHHH-HHHHHHHHHHTCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCGGGGTCCCCSSHHHHHHHHHCHHH
T ss_pred             HHHHHH-HHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEcCCcEEECcccccCcCCCccHHHHHHHHhCHHH
Confidence            111222 3567788999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCcccc
Q 026342          226 QCLWWGLKKHVKC  238 (240)
Q Consensus       226 a~ellltG~~i~A  238 (240)
                      |++|+++|+.|+|
T Consensus       163 A~~l~ltg~~~~a  175 (265)
T 3kqf_A          163 AKELIYTGRRISA  175 (265)
T ss_dssp             HHHHHHHCCCEEH
T ss_pred             HHHHHHcCCCCCH
Confidence            9999999999986

>3t8b_A 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase superfamily, lyase; 1.65A {Mycobacterium tuberculosis} PDB: 3t8a_A 1rjm_A* 1rjn_A* 1q52_A 1q51_A

Probab=100.00  E-value=4.2e-44  Score=319.24  Aligned_cols=184  Identities=47%  Similarity=0.815  Sum_probs=156.7

Q ss_pred             CcccceeeccCCCCcceeEEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCC-----
Q 026342           53 HDVVWRIACDESGTEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTE-----  127 (240)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~-----  127 (240)
                      .|..|....  ...+|++|.++++++++|++|+||||+++|+||.+|+.+|.++|+.++.|++||+|||||.|++     
T Consensus        41 ~p~~w~~~~--~~~~~~~i~~~~~~~~gVa~ItlnrP~~~NAl~~~~~~eL~~al~~~~~d~~vrvVVltG~G~~~~~~~  118 (334)
T 3t8b_A           41 DAKAWRLVD--GFDDLTDITYHRHVDDATVRVAFNRPEVRNAFRPHTVDELYRVLDHARMSPDVGVVLLTGNGPSPKDGG  118 (334)
T ss_dssp             CGGGEEECT--TCTTCSSEEEEEESSSSEEEEEECCGGGTTCCCHHHHHHHHHHHHHHHHCTTCCEEEEEECCCCTTTCC
T ss_pred             Ccccccccc--ccCCCceEEEEEeccCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEeCCCCCcCCCC
Confidence            568887543  2346889999985459999999999999999999999999999999999999999999999954     


Q ss_pred             -CcccCCCccccccCCc--c--------chhhhhhhhHHHHHHHHHcCCCcEEEEECchhchhhHHHhhhcCEEEEe-CC
Q 026342          128 -AFCSGGDQALRTRDGY--A--------DYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAA-DN  195 (240)
Q Consensus       128 -~FcaG~Dl~~~~~~~~--~--------~~~~~~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~lal~~D~rias-~~  195 (240)
                       +||+|+|++++.....  .        +........+.+++.+|.++||||||+|||+|+|||++|+++||+|||+ ++
T Consensus       119 ~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIAaV~G~A~GgG~~LalacD~riAs~~~  198 (334)
T 3t8b_A          119 WAFCSGGDQRIRGRSGYQYASGDTADTVDVARAGRLHILEVQRLIRFMPKVVICLVNGWAAGGGHSLHVVCDLTLASREY  198 (334)
T ss_dssp             CEEECCSCTTTTC----------------------CCHHHHHHHHHHSSSEEEEEECSEEETHHHHHHHHSSEEEEETTT
T ss_pred             CcccCCCCHHHhhcccccccccccchhhhHHHHHHHHHHHHHHHHHhCCCCEEEEECCccccCcchhHhhCCEEEEeCCC
Confidence             8999999987643211  0        0000112234567889999999999999999999999999999999999 99


Q ss_pred             cEEecccccccccCCCchHHHHHhhcCHHHHHHHHhcCCcccc
Q 026342          196 AIFGQTGPKVGSFDAGYGSSIMSRLVSTVQQCLWWGLKKHVKC  238 (240)
Q Consensus       196 a~f~~pe~~~Gl~p~~g~~~~l~rlvG~~~a~ellltG~~i~A  238 (240)
                      ++|++||+++|++|++|++++|+|++|..+|++|+++|+.|+|
T Consensus       199 A~f~~pe~~lGl~p~~gg~~~L~r~vG~~~A~ellltG~~i~A  241 (334)
T 3t8b_A          199 ARFKQTDADVGSFDGGYGSAYLARQVGQKFAREIFFLGRTYTA  241 (334)
T ss_dssp             CEEECCCTTCSSSSCCSCHHHHHHHHHHHHHHHHHHHCCEEEH
T ss_pred             cEEECcccccCCCCcccHHHHHHHHhhHHHHHHHHHhCCcCCH
Confidence            9999999999999999999999999999999999999999987

>4eml_A Naphthoate synthase; 1,4-dihydroxy-2-naphthoyl-coenzyme A, lyase; 2.04A {Synechocystis SP}

Probab=100.00  E-value=3.4e-44  Score=312.44  Aligned_cols=170  Identities=62%  Similarity=1.016  Sum_probs=146.2

Q ss_pred             cceeEEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEee-----CCCCCcccCCCccccccC
Q 026342           67 EFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTG-----KGTEAFCSGGDQALRTRD  141 (240)
Q Consensus        67 ~~~~v~~~~~~~~~v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg-----~g~~~FcaG~Dl~~~~~~  141 (240)
                      +|+.|.+++  +++|++|+||||+++|+||.+|+.+|.++++.++.|+++|+|||||     .|+++||+|+|++++...
T Consensus         8 ~~~~v~~~~--~~~va~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~~~~~~G~~~F~aG~Dl~~~~~~   85 (275)
T 4eml_A            8 HYDDILYYK--AGGIAKIVINRPHKRNAFRPQTVFELYDAFCNAREDNRIGVVLLTGAGPHSDGKYAFCSGGDQSVRGEG   85 (275)
T ss_dssp             ECSSEEEEE--ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEECCCCTTSCCEEECCBCCC-----
T ss_pred             CCceEEEEE--ECCEEEEEecCCCccCCCCHHHHHHHHHHHHHHHhCCCceEEEEeCCCcCcCCCCceeCCcChhhhhcc
Confidence            466789988  7999999999999999999999999999999999999999999999     886699999999987542


Q ss_pred             CccchhhhhhhhHHHHHHHHHcCCCcEEEEECchhchhhHHHhhhcCEEEEeCCcEEecccccccccCCCchHHHHHhhc
Q 026342          142 GYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLV  221 (240)
Q Consensus       142 ~~~~~~~~~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~a~f~~pe~~~Gl~p~~g~~~~l~rlv  221 (240)
                      ..............+++.++.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|+++++++|+|++
T Consensus        86 ~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~~g~~~L~r~v  165 (275)
T 4eml_A           86 GYIDDQGTPRLNVLDLQRLIRSMPKVVIALVAGYAIGGGHVLHLVCDLTIAADNAIFGQTGPKVGSFDGGFGSSYLARIV  165 (275)
T ss_dssp             ---------CCCHHHHHHHHHHSSSEEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCHHHHTCCCCSTTTHHHHHHH
T ss_pred             cccchhhHHHHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEcCCCEEECcccccCCCCCccHHHHHHHHh
Confidence            21111111112355778899999999999999999999999999999999999999999999999998888899999999


Q ss_pred             CHHHHHHHHhcCCcccc
Q 026342          222 STVQQCLWWGLKKHVKC  238 (240)
Q Consensus       222 G~~~a~ellltG~~i~A  238 (240)
                      |..+|++|+++|+.|+|
T Consensus       166 G~~~A~~llltg~~i~A  182 (275)
T 4eml_A          166 GQKKAREIWYLCRQYSA  182 (275)
T ss_dssp             CHHHHHHHHHHCCCEEH
T ss_pred             HHHHHHHHHHhCCCcCH
Confidence            99999999999999987

>3t89_A 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase superfamily, lyase; 1.95A {Escherichia coli} PDB: 3t88_A 4elx_A 4elw_A 4els_A 3h02_A 2iex_A

Probab=100.00  E-value=6.3e-44  Score=312.73  Aligned_cols=180  Identities=62%  Similarity=0.975  Sum_probs=151.6

Q ss_pred             CcccceeeccCCCCcceeEEEEEEeC-CCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCccc
Q 026342           53 HDVVWRIACDESGTEFTDIIYEKAVG-EGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCS  131 (240)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~v~~~~~~~-~~v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~Fca  131 (240)
                      .|..|-.    ....++.|.+++  + ++|++|+||||+++|+||.+|+.+|.+++++++.|+++|+|||||.|+++||+
T Consensus        15 ~p~~~~~----~~~~~~~v~~~~--~~~~va~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~G~~~Fca   88 (289)
T 3t89_A           15 APVEWHD----CSEGFEDIRYEK--STDGIAKITINRPQVRNAFRPLTVKEMIQALADARYDDNIGVIILTGAGDKAFCS   88 (289)
T ss_dssp             SCCCEEE----CCTTCSSEEEEE--ETTSEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSSEEEC
T ss_pred             CCccccc----cCCCCCeEEEEE--ecCCEEEEEECCCCcCCCCCHHHHHHHHHHHHHHHhCCCceEEEEEcCCCCCccC
Confidence            4566664    245677899988  6 89999999999999999999999999999999999999999999999669999


Q ss_pred             CCCccccccCCc-cchhhhhhhhHHHHHHHHHcCCCcEEEEECchhchhhHHHhhhcCEEEEeCCcEEecccccccccCC
Q 026342          132 GGDQALRTRDGY-ADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDA  210 (240)
Q Consensus       132 G~Dl~~~~~~~~-~~~~~~~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~a~f~~pe~~~Gl~p~  210 (240)
                      |+|++++..... .+..........+++.++.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|+
T Consensus        89 G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~~~  168 (289)
T 3t89_A           89 GGDQKVRGDYGGYKDDSGVHHLNVLDFQRQIRTCPKPVVAMVAGYSIGGGHVLHMMCDLTIAADNAIFGQTGPKVGSFDG  168 (289)
T ss_dssp             CBCCC----------------CTHHHHHHHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCHHHHTCCCC
T ss_pred             CCChhhhhccccchhhhHHHHHHHHHHHHHHHcCCCCEEEEECCEeehHHHHHHHhCCEEEEeCCCEEeccccccCCCCC
Confidence            999997643211 1111111123557788999999999999999999999999999999999999999999999998888


Q ss_pred             CchHHHHHhhcCHHHHHHHHhcCCcccc
Q 026342          211 GYGSSIMSRLVSTVQQCLWWGLKKHVKC  238 (240)
Q Consensus       211 ~g~~~~l~rlvG~~~a~ellltG~~i~A  238 (240)
                      ++++++|+|++|..+|++|+++|+.|+|
T Consensus       169 ~~g~~~L~r~vG~~~A~~llltG~~i~A  196 (289)
T 3t89_A          169 GWGASYMARIVGQKKAREIWFLCRQYDA  196 (289)
T ss_dssp             STTTHHHHHHHCHHHHHHHHHHCCCEEH
T ss_pred             chHHHHHHHhcCHHHHHHHHHcCCcccH
Confidence            8889999999999999999999999986

>3fdu_A Putative enoyl-COA hydratase/isomerase; structural genomics, PSI-2; 2.00A {Acinetobacter baumannii}

Probab=100.00  E-value=1.1e-43  Score=307.84  Aligned_cols=166  Identities=22%  Similarity=0.292  Sum_probs=149.3

Q ss_pred             ceeEEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccc---cCCcc
Q 026342           68 FTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRT---RDGYA  144 (240)
Q Consensus        68 ~~~v~~~~~~~~~v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~---~~~~~  144 (240)
                      ++.|.+++  +++|++|+||||+++|+||.+|+.+|.++++.+++|+++|+|||||.| ++||+|+|++++.   .....
T Consensus         4 ~~~v~~~~--~~~v~~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~~~~~   80 (266)
T 3fdu_A            4 HPHLNANL--EGGVLTLAINRPEAKNALYGELYLWIAKALDEADQNKDVRVVVLRGAE-HDFTAGNDMKDFMGFVQNPNA   80 (266)
T ss_dssp             CTTEEEEE--ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESS-SCSBCCBCHHHHHHHHHSCCC
T ss_pred             CCeEEEEE--ECCEEEEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCcEEEEEECCC-CCeECCcCHHHHhhhccccch
Confidence            45688888  799999999999999999999999999999999999999999999999 8999999998765   32221


Q ss_pred             chhhhhhhhHHHHHHHHHcCCCcEEEEECchhchhhHHHhhhcCEEEEeCCcEEecccccccccCCCchHHHHHhhcCHH
Q 026342          145 DYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVSTV  224 (240)
Q Consensus       145 ~~~~~~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~a~f~~pe~~~Gl~p~~g~~~~l~rlvG~~  224 (240)
                      .. .. .....+++.++.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|..
T Consensus        81 ~~-~~-~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~  158 (266)
T 3fdu_A           81 GP-AG-QVPPFVLLKSAARLSKPLIIAVKGVAIGIGVTILLQADLVFADNTALFQIPFVSLGLSPEGGASQLLVKQAGYH  158 (266)
T ss_dssp             SC-GG-GSHHHHHHHHHHHCCSCEEEEECSEEETHHHHGGGGCSEEEECTTCEEECCTTTTTCCCCTTHHHHHHHHHCHH
T ss_pred             hh-HH-HHHHHHHHHHHHhCCCCEEEEECCEEehHHHHHHHhCCEEEEcCCCEEECchhhhCCCCcchHHHHHHHHhCHH
Confidence            11 11 11355778899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCcccc
Q 026342          225 QQCLWWGLKKHVKC  238 (240)
Q Consensus       225 ~a~ellltG~~i~A  238 (240)
                      +|++|+++|+.|+|
T Consensus       159 ~A~~l~ltg~~i~A  172 (266)
T 3fdu_A          159 KAAELLFTAKKFNA  172 (266)
T ss_dssp             HHHHHHHHCCEECH
T ss_pred             HHHHHHHhCCCcCH
Confidence            99999999999987

>3hin_A Putative 3-hydroxybutyryl-COA dehydratase; structural genomics, protein structure INI NEW YORK structural genomix research consortium; 2.00A {Rhodopseudomonas palustris}

Probab=100.00  E-value=1.1e-43  Score=309.14  Aligned_cols=167  Identities=20%  Similarity=0.286  Sum_probs=149.0

Q ss_pred             CcceeEEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccc
Q 026342           66 TEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYAD  145 (240)
Q Consensus        66 ~~~~~v~~~~~~~~~v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~  145 (240)
                      .+++.|.+++  +++|++|+||||+++|+||.+|+.+|.++|+++  |+++|+|||+|.| ++||+|+|++++.......
T Consensus        13 m~~~~v~~~~--~~~va~itlnrP~~~Nal~~~~~~~L~~al~~~--d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~~~   87 (275)
T 3hin_A           13 ADPSTLVVDT--VGPVLTIGLNRPKKRNALNDGLMAALKDCLTDI--PDQIRAVVIHGIG-DHFSAGLDLSELRERDATE   87 (275)
T ss_dssp             CCGGGEEEEE--ETTEEEEEECCGGGTTCBCHHHHHHHHHHTSSC--CTTCCEEEEEESS-SCSBCCBCGGGCCCCCHHH
T ss_pred             CCCCeEEEEE--ECCEEEEEEcCCCcCCCCCHHHHHHHHHHHHHh--CcCceEEEEECCC-CCccCCCCHHHHhccChhh
Confidence            4567799988  799999999999999999999999999999999  6789999999999 7999999999875432211


Q ss_pred             hhhhhhhhHHHHHHHHHcCCCcEEEEECchhchhhHHHhhhcCEEEEeCCcEEecccccccccCCCchHHHHHhhcCHHH
Q 026342          146 YENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVSTVQ  225 (240)
Q Consensus       146 ~~~~~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~a~f~~pe~~~Gl~p~~g~~~~l~rlvG~~~  225 (240)
                      .... ...+.+++.++.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|..+
T Consensus        88 ~~~~-~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~  166 (275)
T 3hin_A           88 GLVH-SQTWHRVFDKIQYCRVPVIAALKGAVIGGGLELACAAHIRVAEASAYYALPEGSRGIFVGGGGSVRLPRLIGVAR  166 (275)
T ss_dssp             HHHH-HHHHHHHHHHHHTCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECGGGGGTCCCCSSHHHHHHHHHCHHH
T ss_pred             HHHH-HHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEcCCCEEECchhccCCCCCccHHHHHHHHhCHHH
Confidence            1111 123567788999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCcccc
Q 026342          226 QCLWWGLKKHVKC  238 (240)
Q Consensus       226 a~ellltG~~i~A  238 (240)
                      |++|+++|+.|+|
T Consensus       167 A~~l~ltG~~i~A  179 (275)
T 3hin_A          167 MADMMLTGRVYSA  179 (275)
T ss_dssp             HHHHHHHCCCEEH
T ss_pred             HHHHHHcCCCCCH
Confidence            9999999999986

>4hdt_A 3-hydroxyisobutyryl-COA hydrolase; ssgcid, carnitinyl-COA dehydratase, enoyl-COA hydratase/ISOM mycobacterium thermoresistibIle; 1.60A {Mycobacterium thermoresistibile}

Probab=100.00  E-value=4.5e-44  Score=321.51  Aligned_cols=168  Identities=21%  Similarity=0.328  Sum_probs=149.2

Q ss_pred             cceeEEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCcc--
Q 026342           67 EFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYA--  144 (240)
Q Consensus        67 ~~~~v~~~~~~~~~v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~--  144 (240)
                      .+++|++++  +++|++||||||+++|+||.+|+.+|.++|+.+++|++||+|||||.|+++||+|+|++++......  
T Consensus         7 ~~e~vl~e~--~~~Va~itLnrP~~~NAl~~~m~~~l~~al~~~~~d~~vr~vvltg~G~~~FcaG~Dl~~~~~~~~~~~   84 (353)
T 4hdt_A            7 KNEDVLVNV--EGGVGLLTLNRPKAINSLTHGMVTTMAERLAAWENDDSVRAVLLTGAGERGLCAGGDVVAIYHSAKADG   84 (353)
T ss_dssp             -CCSEEEEE--ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHTCTTCCEEEEEESSSSBSBCCBCHHHHHHHHHTTS
T ss_pred             CCCcEEEEE--ECCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHHhCCCceEEEEEeCCCCCEecCcCHHHHhhccchhh
Confidence            456799998  7999999999999999999999999999999999999999999999998899999999876432111  


Q ss_pred             -chhhhhhhhHHHHHHHHHcCCCcEEEEECchhchhhHHHhhhcCEEEEeCCcEEecccccccccCCCchHHHHHhhcCH
Q 026342          145 -DYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVST  223 (240)
Q Consensus       145 -~~~~~~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~a~f~~pe~~~Gl~p~~g~~~~l~rlvG~  223 (240)
                       ....+.. ..+.++..|.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++| 
T Consensus        85 ~~~~~~~~-~~~~~~~~i~~~~kPvIAav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~iGl~p~~g~~~~l~rl~g-  162 (353)
T 4hdt_A           85 AEARRFWF-DEYRLNAHIGRYPKPYVSIMDGIVMGGGVGVGAHGNVRVVTDTTKMAMPEVGIGFIPDVGGTYLLSRAPG-  162 (353)
T ss_dssp             HHHHHHHH-HHHHHHHHHHHCSSCEEEEECBEEETHHHHHHTTSSEEEECTTCEEECCGGGGTCCCCTTHHHHHHTSST-
T ss_pred             HHHHHHHH-HHHHHHHHHHHCCCCEEEEeECceeecCccccCCcCeeccchhccccCcccccccCCCccceehhhhhhh-
Confidence             1111111 3456788999999999999999999999999999999999999999999999999999999999999999 


Q ss_pred             HHHHHHHhcCCcccc
Q 026342          224 VQQCLWWGLKKHVKC  238 (240)
Q Consensus       224 ~~a~ellltG~~i~A  238 (240)
                      ++|++|+|||++|+|
T Consensus       163 ~~a~~l~ltG~~i~A  177 (353)
T 4hdt_A          163 KLGLHAALTGAPFSG  177 (353)
T ss_dssp             THHHHHHHHCCCBCH
T ss_pred             HHHHHHHhcCCCCCH
Confidence            699999999999986

>3lke_A Enoyl-COA hydratase; nysgrc, target 112 structural genomics, PSI-2, protein structure initiative; 1.70A {Bacillus halodurans}

Probab=100.00  E-value=9.8e-44  Score=307.67  Aligned_cols=167  Identities=22%  Similarity=0.263  Sum_probs=149.5

Q ss_pred             ceeEEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCc-ccCCCcccccc----CC
Q 026342           68 FTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAF-CSGGDQALRTR----DG  142 (240)
Q Consensus        68 ~~~v~~~~~~~~~v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~F-caG~Dl~~~~~----~~  142 (240)
                      ++.|.+++  +++|++|+||||+++|+||.+|+.+|.++++.++.|+++|+|||||.| +.| |+|+|++++..    ..
T Consensus         3 ~~~v~~~~--~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g-~~FF~aG~Dl~~~~~~~~~~~   79 (263)
T 3lke_A            3 LSYVHTEI--QNDALYITLDYPEKKNGLDAELGTSLLEAIRAGNNETSIHSIILQSKH-RAYFSSGPRLEDLLICASDQS   79 (263)
T ss_dssp             CCSEEEEE--CSSEEEEEECCGGGTTBCCHHHHHHHHHHHHHHHHCSSCCEEEEEESC-TTEEECBSCHHHHHHHHHCSS
T ss_pred             CcEEEEEE--ECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHhcCCCeEEEEEEcCC-CceEecCcCHHHHHhhcccCC
Confidence            45688888  899999999999999999999999999999999999999999999999 688 99999987654    11


Q ss_pred             ccchhhhhhhhHHHHHHHHHcCCCcEEEEECchhchhhHHHhhhcCEEEEeCCcEEecccccccccCCCchHHHHHhhcC
Q 026342          143 YADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVS  222 (240)
Q Consensus       143 ~~~~~~~~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~a~f~~pe~~~Gl~p~~g~~~~l~rlvG  222 (240)
                      ......+.. .+.+++.++.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|
T Consensus        80 ~~~~~~~~~-~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~~~vG  158 (263)
T 3lke_A           80 DVRLREVLH-VLNHCVLEIFTSPKVTVALINGYAYGGGFNMMLACDRRIALRRAKFLENFHKMGISPDLGASYFLPRIIG  158 (263)
T ss_dssp             SHHHHHHHH-HHHHHHHHHHTCSSEEEEEECSEEETHHHHGGGGSSEEEEETTCEEECCHHHHTCCCCTTHHHHHHHHHC
T ss_pred             HHHHHHHHH-HHHHHHHHHHhCCCCEEEEECCEeeHHHHHHHHHCCEEEEcCCCEEeCchHhhCCCCCccHHHHHHHHhC
Confidence            111111122 3567888999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCcccc
Q 026342          223 TVQQCLWWGLKKHVKC  238 (240)
Q Consensus       223 ~~~a~ellltG~~i~A  238 (240)
                      ..+|++|+++|+.|+|
T Consensus       159 ~~~A~~l~ltg~~~~a  174 (263)
T 3lke_A          159 YEQTMNLLLEGKLFTS  174 (263)
T ss_dssp             HHHHHHHHHHCCCEEH
T ss_pred             HHHHHHHHHhCCCcCH
Confidence            9999999999999986

>3i47_A Enoyl COA hydratase/isomerase (crotonase); structural genomics; 1.58A {Legionella pneumophila subsp} SCOP: c.14.1.0

Probab=100.00  E-value=2.4e-43  Score=306.07  Aligned_cols=167  Identities=28%  Similarity=0.418  Sum_probs=147.2

Q ss_pred             ceeEEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccchh
Q 026342           68 FTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYE  147 (240)
Q Consensus        68 ~~~v~~~~~~~~~v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~~  147 (240)
                      ++.|.+++  +++|++|+||||+++|+||.+|+.+|.++++.++.|+++|+|||||.| ++||+|+|++++.........
T Consensus         3 ~~~v~~~~--~~~va~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~~~~~   79 (268)
T 3i47_A            3 LSDLLYEI--QDKVGLLTMNRISKHNAFDNQLLTEMRIRLDSAINDTNVRVIVLKANG-KHFSAGADLTWMQSMANFTEE   79 (268)
T ss_dssp             CCSEEEEE--ETTEEEEEECCTTTTTCBCHHHHHHHHHHHHHHHHCTTCSEEEEEECS-SCSBCSBCHHHHHHHHTCCHH
T ss_pred             CCEEEEEE--ECCEEEEEECCCCcCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEECCC-CCeeCCCChhhhhccccccHH
Confidence            56788888  799999999999999999999999999999999999999999999999 899999999876432111111


Q ss_pred             h--hhhhhHHHHHHHHHcCCCcEEEEECchhchhhHHHhhhcCEEEEeCCcEEecccccccccCCCchHHHHHhhcCHHH
Q 026342          148 N--FGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVSTVQ  225 (240)
Q Consensus       148 ~--~~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~a~f~~pe~~~Gl~p~~g~~~~l~rlvG~~~  225 (240)
                      .  .....+.+++.++.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|+++++ +|++++|..+
T Consensus        80 ~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~-~l~~~vG~~~  158 (268)
T 3i47_A           80 ENLEDSLVLGNLMYSISQSPKPTIAMVQGAAFGGGAGLAAACDIAIASTSARFCFSEVKLGLIPAVISP-YVVRAIGERA  158 (268)
T ss_dssp             HHHHHHHHHHHHHHHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCGGGGTCCCTTTHH-HHHHHHCHHH
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCEEEEECCEEEhHhHHHHHhCCEEEEcCCCEEECcccccCCCcccHHH-HHHHHhCHHH
Confidence            1  111135577889999999999999999999999999999999999999999999999999988766 8999999999


Q ss_pred             HHHHHhcCCcccc
Q 026342          226 QCLWWGLKKHVKC  238 (240)
Q Consensus       226 a~ellltG~~i~A  238 (240)
                      |++|+++|+.|+|
T Consensus       159 A~~llltg~~i~A  171 (268)
T 3i47_A          159 AKMLFMSAEVFDA  171 (268)
T ss_dssp             HHHHHHHCCEEEH
T ss_pred             HHHHHHcCCccCH
Confidence            9999999999986

>3gkb_A Putative enoyl-COA hydratase; structural genomics, unknown function, PSI-2, protein struct initiative; 1.80A {Streptomyces avermitilis}

Probab=100.00  E-value=1.2e-43  Score=310.76  Aligned_cols=170  Identities=22%  Similarity=0.268  Sum_probs=149.2

Q ss_pred             CcceeEEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCcc-
Q 026342           66 TEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYA-  144 (240)
Q Consensus        66 ~~~~~v~~~~~~~~~v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~-  144 (240)
                      ..|+.|.+++  +++|++||||||+ +|+||.+|+.+|.++|+++++|+++|+|||||.|+++||+|+|++++...... 
T Consensus         6 ~~~~~i~~~~--~~~va~itlnrP~-~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~~FcaG~Dl~~~~~~~~~~   82 (287)
T 3gkb_A            6 DAYSTLRVSS--EHGVARIILDNPP-VNVIGATMMRELRTVLTTLADDSSVRVIVFSSADPEFFLAHVDMRIGEKMDALQ   82 (287)
T ss_dssp             -CCSSEEEEE--ETTEEEEEECCTT-TTCBCHHHHHHHHHHHHHHHTCTTCCEEEEEESSSSEEECCBCTTGGGSHHHHH
T ss_pred             CCCCeEEEEE--ECCEEEEEECCCC-CCCCCHHHHHHHHHHHHHHHcCCCeeEEEEecCCCCceeCCcCHHHHhhccccc
Confidence            4567799988  7999999999998 79999999999999999999999999999999987899999999976432100 


Q ss_pred             c-hh--hhhhhhHHHHHHHHHcCCCcEEEEECchhchhhHHHhhhcCEEEEeC-CcEEecccccccccCCCchHHHHHhh
Q 026342          145 D-YE--NFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAAD-NAIFGQTGPKVGSFDAGYGSSIMSRL  220 (240)
Q Consensus       145 ~-~~--~~~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~lal~~D~rias~-~a~f~~pe~~~Gl~p~~g~~~~l~rl  220 (240)
                      . ..  ......+.+++.+|.++||||||+|||+|+|||++|+++||+|||++ +++|++||+++|++|++|++++|+|+
T Consensus        83 ~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~lalacD~ria~~~~a~f~~pe~~lGl~p~~g~~~~L~r~  162 (287)
T 3gkb_A           83 ELAASAPADVNVFQAVGELIRHQPQVTIVKLAGKARGGGAEFVAAADMAFAAAETAGLGQIEALMGIIPGGGGTQYLRGR  162 (287)
T ss_dssp             HHHHTSCTTCCTTHHHHHHHHHCSSEEEEEECSEEETHHHHHHHHSSEEEEETTTCEEECGGGGGTSCCCSSHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHHCCEEEEeCCCcEEECcccccCCCCCchHHHHHHHH
Confidence            0 00  00011245678899999999999999999999999999999999999 99999999999999999999999999


Q ss_pred             cCHHHHHHHHhcCCcccc
Q 026342          221 VSTVQQCLWWGLKKHVKC  238 (240)
Q Consensus       221 vG~~~a~ellltG~~i~A  238 (240)
                      +|..+|++|++||+.|+|
T Consensus       163 vG~~~A~ellltG~~i~A  180 (287)
T 3gkb_A          163 VGRNRALEVVLTADLFDA  180 (287)
T ss_dssp             HCHHHHHHHHHHCCCEEH
T ss_pred             hCHHHHHHHHHcCCCCCH
Confidence            999999999999999987

>3qmj_A Enoyl-COA hydratase, ECHA8_6; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.20A {Mycobacterium marinum}

Probab=100.00  E-value=5.1e-44  Score=308.27  Aligned_cols=169  Identities=24%  Similarity=0.331  Sum_probs=145.4

Q ss_pred             cceeEEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccch
Q 026342           67 EFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADY  146 (240)
Q Consensus        67 ~~~~v~~~~~~~~~v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~  146 (240)
                      .+..|.+++  +++|++|+||||+++|+||.+|+.+|.+++++++.|+++|+|||+|.| ++||+|+|++++........
T Consensus         4 ~~~~v~~~~--~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~~~~   80 (256)
T 3qmj_A            4 SMVTLQIDD--DNRVRTLTLNRPEALNAFNEALYDATAQALLDAADDPQVAVVLLTGSG-RGFSAGTDLAEMQARITDPN   80 (256)
T ss_dssp             --CCEEEEE--ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEEST-TEEECCBCHHHHHHHHHSSS
T ss_pred             CcceEEEEE--ECCEEEEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCC-CCcccCcCHHHHhhcccchh
Confidence            456788888  799999999999999999999999999999999999999999999999 89999999987643211100


Q ss_pred             hhhhhhhHHHHHHHHHcCCCcEEEEECchhchhhHHHhhhcCEEEEeCCcEEecccccccccCCCchHHHHHhhcCHHHH
Q 026342          147 ENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVSTVQQ  226 (240)
Q Consensus       147 ~~~~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~a~f~~pe~~~Gl~p~~g~~~~l~rlvG~~~a  226 (240)
                      .......+.+++.++.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|..+|
T Consensus        81 ~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~A  160 (256)
T 3qmj_A           81 FSEGKFGFRGLIKALAGFPKPLICAVNGLGVGIGATILGYADLAFMSSTARLKCPFTSLGVAPEAASSYLLPQLVGRQNA  160 (256)
T ss_dssp             CCCCSSHHHHHHHHHHHCCSCEEEEECSEEETHHHHGGGGCSEEEEETTCEEECCGGGC---CCTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhCCCCEEEEECCeehhHHHHHHHhCCEEEEeCCCEEECcccccCCCCCccHHHHHHHHhCHHHH
Confidence            00011134577889999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCcccc
Q 026342          227 CLWWGLKKHVKC  238 (240)
Q Consensus       227 ~ellltG~~i~A  238 (240)
                      ++|+++|+.|+|
T Consensus       161 ~~l~ltg~~~~a  172 (256)
T 3qmj_A          161 AWLLMSSEWIDA  172 (256)
T ss_dssp             HHHHHSCCCEEH
T ss_pred             HHHHHcCCCCCH
Confidence            999999999986

>2uzf_A Naphthoate synthase; lyase, menaquinone biosynthesis; HET: CAA; 2.9A {Staphylococcus aureus}

Probab=100.00  E-value=1.5e-43  Score=308.12  Aligned_cols=170  Identities=63%  Similarity=1.004  Sum_probs=146.1

Q ss_pred             CcceeEEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCC-CcccCCCccccccCCcc
Q 026342           66 TEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTE-AFCSGGDQALRTRDGYA  144 (240)
Q Consensus        66 ~~~~~v~~~~~~~~~v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~-~FcaG~Dl~~~~~~~~~  144 (240)
                      ..|+.|.+++  +++|++|+||||+++|+||.+|+.+|.++|++++.|+++|+|||||.| + +||+|+|++++......
T Consensus        10 ~~~~~i~~~~--~~~va~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g-~~~FcaG~Dl~~~~~~~~~   86 (273)
T 2uzf_A           10 REYDEIKYEF--YEGIAKVTINRPEVRNAFTPKTVAEMIDAFSRARDDQNVSVIVLTGEG-DLAFCSGGDQKKRGHGGYV   86 (273)
T ss_dssp             BCCSSEEEEE--ETTEEEEEECCGGGTTCCCHHHHHHHHHHHHHHHHCTTCCEEEEEESS-SEEEECCCCCC--------
T ss_pred             CCCceEEEEE--ECCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHhCCCcEEEEEecCC-CCceecCcCcHhhhccccc
Confidence            3456788887  689999999999999999999999999999999999999999999999 6 99999999876431111


Q ss_pred             chhhhhhhhHHHHHHHHHcCCCcEEEEECchhchhhHHHhhhcCEEEEeCCcEEecccccccccCCCchHHHHHhhcCHH
Q 026342          145 DYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVSTV  224 (240)
Q Consensus       145 ~~~~~~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~a~f~~pe~~~Gl~p~~g~~~~l~rlvG~~  224 (240)
                      .........+.+++..+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..
T Consensus        87 ~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~  166 (273)
T 2uzf_A           87 GEDQIPRLNVLDLQRLIRIIPKPVIAMVKGYAVGGGNVLNVVCDLTIAADNAIFGQTGPKVGSFDAGYGSGYLARIVGHK  166 (273)
T ss_dssp             CCSSSCCCTHHHHHHHHHHSSSCEEEEECEEEETHHHHHHHHSSEEEEETTCEEECCGGGTTCCCCSTTTHHHHHHHCHH
T ss_pred             hhhhHHHhhHHHHHHHHHhCCCCEEEEECCEEeehhHHHHHhCCEEEEcCCCEEECchhhhCCCCchhHHHHHHHHhCHH
Confidence            11111011244677889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCcccc
Q 026342          225 QQCLWWGLKKHVKC  238 (240)
Q Consensus       225 ~a~ellltG~~i~A  238 (240)
                      +|++|+++|+.|+|
T Consensus       167 ~A~~l~ltg~~~~a  180 (273)
T 2uzf_A          167 KAREIWYLCRQYNA  180 (273)
T ss_dssp             HHHHHHHTCCCEEH
T ss_pred             HHHHHHHhCCCCCH
Confidence            99999999999986

>3g64_A Putative enoyl-COA hydratase; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; 2.05A {Streptomyces coelicolor A3}

Probab=100.00  E-value=2.8e-43  Score=307.20  Aligned_cols=171  Identities=25%  Similarity=0.339  Sum_probs=151.5

Q ss_pred             CCcceeEEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCcc
Q 026342           65 GTEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYA  144 (240)
Q Consensus        65 ~~~~~~v~~~~~~~~~v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~  144 (240)
                      .++|+.|.+++  +++|++|+||||+++|+||.+|+.+|.++++++++|+++|+|||+|.| ++||+|+|++++......
T Consensus        13 ~~~~~~v~~~~--~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~~   89 (279)
T 3g64_A           13 TPEWRHLRVEI--TDGVATVTLARPDKLNALTFEAYADLRDLLAELSRRRAVRALVLAGEG-RGFCSGGDVDEIIGATLS   89 (279)
T ss_dssp             CSCCSSEEEEE--ETTEEEEEESCGGGTTCBCHHHHHHHHHHHHHHHHTTCCSEEEEEECS-SCSBCCBCTTTTHHHHTT
T ss_pred             CCCCCeEEEEE--ECCEEEEEECCCcccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCC-CceecCcCHHHHhhcccc
Confidence            35677899998  799999999999999999999999999999999999999999999999 899999999986532111


Q ss_pred             c-hhh--hhhhhHHHHHHHHHcCCCcEEEEECchhchhhHHHhhhcCEEEEeCCcEEeccccccccc-CCCchHHHHHhh
Q 026342          145 D-YEN--FGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSF-DAGYGSSIMSRL  220 (240)
Q Consensus       145 ~-~~~--~~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~a~f~~pe~~~Gl~-p~~g~~~~l~rl  220 (240)
                      . ...  .....+.+++.++.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++ |++|++++|+|+
T Consensus        90 ~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~~p~~g~~~~l~r~  169 (279)
T 3g64_A           90 MDTARLLDFNRMTGQVVRAVRECPFPVIAALHGVAAGAGAVLALAADFRVADPSTRFAFLFTRVGLSGGDMGAAYLLPRV  169 (279)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHSSSCEEEEECSEEETHHHHHHHHSSEEEECTTCEEECCGGGGTCCSCCTTHHHHHHHH
T ss_pred             chhhHHHHHHHHHHHHHHHHHhCCCCEEEEEcCeeccccHHHHHhCCEEEEeCCCEEeCchhhcCCCCCchhHHHHHHHH
Confidence            1 111  111134577889999999999999999999999999999999999999999999999999 999899999999


Q ss_pred             cCHHHHHHHHhcCCcccc
Q 026342          221 VSTVQQCLWWGLKKHVKC  238 (240)
Q Consensus       221 vG~~~a~ellltG~~i~A  238 (240)
                      +|..+|++|+++|+.|+|
T Consensus       170 vG~~~A~~l~ltg~~~~a  187 (279)
T 3g64_A          170 VGLGHATRLLMLGDTVRA  187 (279)
T ss_dssp             HCHHHHHHHHHHCCCEEH
T ss_pred             hCHHHHHHHHHcCCCcCH
Confidence            999999999999999986

>2ej5_A Enoyl-COA hydratase subunit II; structural genomics, GK2038, NPPSFA, national project on prote structural and functional analyses; 2.00A {Geobacillus kaustophilus}

Probab=100.00  E-value=4.6e-43  Score=302.43  Aligned_cols=165  Identities=30%  Similarity=0.419  Sum_probs=143.9

Q ss_pred             eeEEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccchhh
Q 026342           69 TDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYEN  148 (240)
Q Consensus        69 ~~v~~~~~~~~~v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~~~  148 (240)
                      +.|.+++  +++|++|+||||+++|+||.+|+.+|.++|++++.|+++|+|||||.| ++||+|+|++++.....  ...
T Consensus         3 ~~v~~~~--~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~--~~~   77 (257)
T 2ej5_A            3 ETIRYEV--KGQVAWLTLNRPDQLNAFTEQMNAEVTKALKQAGADPNVRCVVITGAG-RAFCAGEDLSGVTEEMD--HGD   77 (257)
T ss_dssp             SSEEEEE--ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESS-SCSBCCBCC-------C--HHH
T ss_pred             CceEEEe--ECCEEEEEECCCCccCCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCC-CCccCCcCHHHHhhccc--hhH
Confidence            4577887  699999999999999999999999999999999999999999999999 89999999987653221  111


Q ss_pred             hhhhhHHHHHHHHHcCCCcEEEEECchhchhhHHHhhhcCEEEEeCCcEEecccccccccCCCchHHHHHhhcCHHHHHH
Q 026342          149 FGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVSTVQQCL  228 (240)
Q Consensus       149 ~~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~a~f~~pe~~~Gl~p~~g~~~~l~rlvG~~~a~e  228 (240)
                      .....+.+++.++.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..+|++
T Consensus        78 ~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~  157 (257)
T 2ej5_A           78 VLRSRYAPMMKALHHLEKPVVAAVNGAAAGAGMSLALACDFRLLSEKASFAPAFIHVGLVPDAGHLYYLPRLVGRAKALE  157 (257)
T ss_dssp             HHHHTHHHHHHHHHHCCSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCGGGGTCCCCTTHHHHHHHHHCHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCCCEEEEECccccchhHHHHHhCCEEEEcCCCEEeCcccccCCCCcchHHHHHHHHhCHHHHHH
Confidence            11112456788999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhcCCcccc
Q 026342          229 WWGLKKHVKC  238 (240)
Q Consensus       229 llltG~~i~A  238 (240)
                      |+++|+.|+|
T Consensus       158 l~ltg~~~~a  167 (257)
T 2ej5_A          158 LAVLGEKVTA  167 (257)
T ss_dssp             HHHHCCCEEH
T ss_pred             HHHhCCccCH
Confidence            9999999986

>4di1_A Enoyl-COA hydratase ECHA17; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis, ortholog; 2.25A {Mycobacterium marinum}

Probab=100.00  E-value=3.4e-43  Score=306.30  Aligned_cols=166  Identities=23%  Similarity=0.378  Sum_probs=149.2

Q ss_pred             ceeEEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccchh
Q 026342           68 FTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYE  147 (240)
Q Consensus        68 ~~~v~~~~~~~~~v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~~  147 (240)
                      ++.|.+++  +++|++|+||||++ |+||.+|+.+|.++|+.++.|+++|+|||+|.| ++||+|+|++++.........
T Consensus        23 ~~~v~~~~--~~~Va~ItlnrP~~-Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g-~~FcaG~Dl~~~~~~~~~~~~   98 (277)
T 4di1_A           23 NEFVSVVA--DQGLATLVVSRPPT-NAMTRQVYREIVAAADELGRRDDIGAVVLFGGH-EIFSAGDDMPELRTLNAPEAD   98 (277)
T ss_dssp             CCSEEEEE--ETTEEEEEECCTTT-TCBCHHHHHHHHHHHHHHHHCTTCCEEEEECCS-SCSBCCBCHHHHHTCCHHHHH
T ss_pred             CceEEEEE--ECCEEEEEECCCCC-CCCCHHHHHHHHHHHHHHHhCCCcEEEEEECCC-CCEecCcCcccccccChHHHH
Confidence            35688888  79999999999999 999999999999999999999999999999998 899999999987543221111


Q ss_pred             hhhhhhHHHHHHHHHcCCCcEEEEECchhchhhHHHhhhcCEEEEeCCcEEecccccccccCCCchHHHHHhhcCHHHHH
Q 026342          148 NFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVSTVQQC  227 (240)
Q Consensus       148 ~~~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~a~f~~pe~~~Gl~p~~g~~~~l~rlvG~~~a~  227 (240)
                      .+.. .+.+++.++.++||||||+|||+|+|||++|+++||||||+++++|++||+++|++|++|++++|++++|..+|+
T Consensus        99 ~~~~-~~~~~~~~l~~~~kPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~lGl~p~~g~~~~L~r~vG~~~A~  177 (277)
T 4di1_A           99 TAAR-VRLEAIDAVAAIPKPTVAAVTGYALGAGLTLALAADWRVSGDNVKFGATEILAGLIPGGGGMGRLTRVVGSSRAK  177 (277)
T ss_dssp             HHHH-HHHHHHHHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECGGGGGTCCCCTTHHHHHHHHHCHHHHH
T ss_pred             HHHH-HHHHHHHHHHhCCCCEEEEECCeEehhHHHHHHhCCEEEEcCCCEEECcccccCCCCCchHHHHHHHHhCHHHHH
Confidence            1221 356778899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCcccc
Q 026342          228 LWWGLKKHVKC  238 (240)
Q Consensus       228 ellltG~~i~A  238 (240)
                      +|+++|+.|+|
T Consensus       178 ~llltG~~i~A  188 (277)
T 4di1_A          178 ELVFSGRFFDA  188 (277)
T ss_dssp             HHHHHCCCEEH
T ss_pred             HHHHcCCCCCH
Confidence            99999999986

>3he2_A Enoyl-COA hydratase ECHA6; fatty acid metabolism, lipid metabolism, lyase, structural genomics; HET: PGE; 2.30A {Mycobacterium tuberculosis}

Probab=100.00  E-value=2.6e-43  Score=305.07  Aligned_cols=164  Identities=29%  Similarity=0.436  Sum_probs=141.8

Q ss_pred             CCcceeEEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCcc
Q 026342           65 GTEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYA  144 (240)
Q Consensus        65 ~~~~~~v~~~~~~~~~v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~  144 (240)
                      ...++.|.+++  +++|++|+||||+++|+||.+|+.+|.++++++++| ++|+|||||.| ++||+|+|++...     
T Consensus        17 ~~~~~~i~~~~--~~~v~~itlnrP~~~Nal~~~~~~~L~~al~~~~~d-~vr~vVltg~G-~~FcaG~Dl~~~~-----   87 (264)
T 3he2_A           17 QGPGSMIGITQ--AEAVLTIELQRPERRNALNSQLVEELTQAIRKAGDG-SARAIVLTGQG-TAFCAGADLSGDA-----   87 (264)
T ss_dssp             -----CEEEEE--ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHCC----CCSEEEEEESS-SCSBCCBCCTTCT-----
T ss_pred             CCCCCeEEEEE--ECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHhhC-CceEEEEECCC-CCccCCcCCccch-----
Confidence            45667799988  799999999999999999999999999999999988 99999999999 8999999998311     


Q ss_pred             chhhhhhhhHHHHHHHHHcCCCcEEEEECchhchhhHHHhhhcCEEEEeCCcEEecccccccccCCCchHHHHHhhcCHH
Q 026342          145 DYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVSTV  224 (240)
Q Consensus       145 ~~~~~~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~a~f~~pe~~~Gl~p~~g~~~~l~rlvG~~  224 (240)
                      ....+.. .+.+++.++.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|..
T Consensus        88 ~~~~~~~-~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~  166 (264)
T 3he2_A           88 FAADYPD-RLIELHKAMDASPMPVVGAINGPAIGAGLQLAMQCDLRVVAPDAFFQFPTSKYGLALDNWSIRRLSSLVGHG  166 (264)
T ss_dssp             TGGGHHH-HHHHHHHHHHHCSSCEEEEECSCEETHHHHHHHHSSEEEECTTCEEECTHHHHTCCCCHHHHHHHHHHHCHH
T ss_pred             hhHHHHH-HHHHHHHHHHhCCCCEEEEECCcEEcchhHHHHhCCEEEEcCCCEEECcccccCcCCcchHHHHHHHHhCHH
Confidence            1111111 345678899999999999999999999999999999999999999999999999999998999999999999


Q ss_pred             HHHHHHhcCCcccc
Q 026342          225 QQCLWWGLKKHVKC  238 (240)
Q Consensus       225 ~a~ellltG~~i~A  238 (240)
                      +|++|+++|+.|+|
T Consensus       167 ~A~~llltG~~i~A  180 (264)
T 3he2_A          167 RARAMLLSAEKLTA  180 (264)
T ss_dssp             HHHHHHHHCCCEEH
T ss_pred             HHHHHHHcCCCccH
Confidence            99999999999986

>3sll_A Probable enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.35A {Mycobacterium abscessus}

Probab=100.00  E-value=1e-42  Score=305.21  Aligned_cols=167  Identities=26%  Similarity=0.373  Sum_probs=143.1

Q ss_pred             eeEEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccch--
Q 026342           69 TDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADY--  146 (240)
Q Consensus        69 ~~v~~~~~~~~~v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~--  146 (240)
                      ..|.++.  +++|++|+||||+++|+||.+|+.+|.++|+.++.|+++|+|||+|.| ++||+|+|++++........  
T Consensus        24 ~~v~~~~--~~~va~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~G-~~F~aG~Dl~~~~~~~~~~~~~  100 (290)
T 3sll_A           24 FVLVDRP--RPEIALVTLNRPERMNAMAFDVMLPFKQMLVDISHDNDVRAVVITGAG-KGFCSGADQKSAGPIPHIGGLT  100 (290)
T ss_dssp             CEEEEEE--ETTEEEEEECCGGGTTCCCHHHHHHHHHHHHHHHTCTTCCEEEEEEST-TCSBCC------CCCSSCTTCC
T ss_pred             eEEEEEE--ECCEEEEEECCCCcCCCCCHHHHHHHHHHHHHHHcCCCeeEEEEECCC-CCeeCCcChHHHhccccccccc
Confidence            4577777  799999999999999999999999999999999999999999999999 89999999998754322110  


Q ss_pred             ----hhhhhhhHHHHHHHHHcCCCcEEEEECchhchhhHHHhhhcCEEEEeCCcEEecccccccccCC-CchHHHHHhhc
Q 026342          147 ----ENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDA-GYGSSIMSRLV  221 (240)
Q Consensus       147 ----~~~~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~a~f~~pe~~~Gl~p~-~g~~~~l~rlv  221 (240)
                          .......+.+++.+|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|+ +|++++|+|++
T Consensus       101 ~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~~g~~~~L~r~v  180 (290)
T 3sll_A          101 QPTIALRSMELLDEVILTLRRMHQPVIAAINGAAIGGGLCLALACDVRVASQDAYFRAAGINNGLTASELGLSYLLPRAI  180 (290)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECTTTTTTSCSCCTTHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHHHHhCCCCEEEEECCeehHHHHHHHHHCCEEEEeCCCEEECchhccCcCCCcccHHHHHHHHh
Confidence                0111113567788999999999999999999999999999999999999999999999999998 88999999999


Q ss_pred             CHHHHHHHHhcCCcccc
Q 026342          222 STVQQCLWWGLKKHVKC  238 (240)
Q Consensus       222 G~~~a~ellltG~~i~A  238 (240)
                      |..+|++|+++|+.|+|
T Consensus       181 G~~~A~~llltG~~i~A  197 (290)
T 3sll_A          181 GTSRASDIMLTGRDVDA  197 (290)
T ss_dssp             CHHHHHHHHHHCCCEEH
T ss_pred             CHHHHHHHHHcCCCCCH
Confidence            99999999999999986

>3lao_A Enoyl-COA hydratase/isomerase; alpha-beta sandwich, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.40A {Pseudomonas aeruginosa}

Probab=100.00  E-value=4.2e-44  Score=309.18  Aligned_cols=170  Identities=18%  Similarity=0.179  Sum_probs=148.3

Q ss_pred             CCcceeEEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCcc
Q 026342           65 GTEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYA  144 (240)
Q Consensus        65 ~~~~~~v~~~~~~~~~v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~  144 (240)
                      ...++.|.+++  +++|++|+||||+++|+||.+|+.+|.++++++++|+++|+|||+|.| +.||+|+|++++......
T Consensus         8 ~~~~~~v~~~~--~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~~   84 (258)
T 3lao_A            8 NSGPGRVTREQ--RGHLFLIGLDRAGKRNAFDSAMLADLALAMGEYERSEESRCAVLFAHG-EHFTAGLDLMELAPKLAA   84 (258)
T ss_dssp             CCSSCCEEEEE--ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESS-SCSBCCBCHHHHGGGCBT
T ss_pred             CCCCCeEEEEE--ECCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhhCCCcEEEEEECCC-CCeecCcCHHHHhhccch
Confidence            34566788988  799999999999999999999999999999999999999999999999 689999999876543221


Q ss_pred             chhhhhhhhHHHHHHHH-HcCCCcEEEEECchhchhhHHHhhhcCEEEEeCCcEEecccccccccCCCchHHHHHhhcCH
Q 026342          145 DYENFGRLNVLDLQVQI-RRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVST  223 (240)
Q Consensus       145 ~~~~~~~~~~~~l~~~i-~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~a~f~~pe~~~Gl~p~~g~~~~l~rlvG~  223 (240)
                      ....+.. .+.+++.++ .++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|.
T Consensus        85 ~~~~~~~-~~~~~~~~l~~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~  163 (258)
T 3lao_A           85 SGFRYPD-GGVDPWGVVQPRRSKPLVVAVQGTCWTAGIELMLNADIAVAARGTRFAHLEVLRGIPPLGGSTVRFPRAAGW  163 (258)
T ss_dssp             TBCCCCT-TCCCTTSCSSSCCCSCEEEEECSEEETHHHHHHHTSSEEEEETTCEEECGGGGTCCCSSCCCCSHHHHHHCH
T ss_pred             hhHHHHH-HHHHHHHHHHHhCCCCEEEEECCEeEhHHHHHHHhCCEEEEcCCCEEeCcccccCCCCCccHHHHHHHHhCH
Confidence            1111111 122345677 89999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCcccc
Q 026342          224 VQQCLWWGLKKHVKC  238 (240)
Q Consensus       224 ~~a~ellltG~~i~A  238 (240)
                      .+|++|+++|+.|+|
T Consensus       164 ~~A~~l~ltg~~~~a  178 (258)
T 3lao_A          164 TDAMRYILTGDEFDA  178 (258)
T ss_dssp             HHHHHHHTTCCCEEH
T ss_pred             HHHHHHHHcCCCCCH
Confidence            999999999999986

>3p5m_A Enoyl-COA hydratase/isomerase; seattle structural genomics center for infectious disease, S coenzyme A, tuberculosis; 2.05A {Mycobacterium avium}

Probab=100.00  E-value=3.7e-43  Score=302.82  Aligned_cols=162  Identities=31%  Similarity=0.452  Sum_probs=146.5

Q ss_pred             cceeEEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccch
Q 026342           67 EFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADY  146 (240)
Q Consensus        67 ~~~~v~~~~~~~~~v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~  146 (240)
                      .++.|.+++  +++|++|+||||+++|+||.+|+.+|.++++++++|+++|+|||+|.| ++||+|+|++++..     .
T Consensus         4 ~~~~i~~~~--~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~-----~   75 (255)
T 3p5m_A            4 SMNGISVEH--DGAVLRIRLDRPEKLNAVDTPMLEELSVHIRDAEADESVRAVLLTGAG-RAFCSGGDLTGGDT-----A   75 (255)
T ss_dssp             CBTTEEEEE--ETTEEEEEECCGGGTTEECHHHHHHHHHHHHHHHHCTTCCEEEEEESS-SCSBCEECC---CH-----H
T ss_pred             CCceEEEEE--ECCEEEEEECCCCcCCCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCC-CCccCCCChhhhcc-----h
Confidence            445688888  799999999999999999999999999999999999999999999999 89999999997652     1


Q ss_pred             hhhhhhhHHHHHHHHHcCCCcEEEEECchhchhhHHHhhhcCEEEEeCCcEEecccccccccCCCchHHHHHhhcCHHHH
Q 026342          147 ENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVSTVQQ  226 (240)
Q Consensus       147 ~~~~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~a~f~~pe~~~Gl~p~~g~~~~l~rlvG~~~a  226 (240)
                       .+ ...+.+++.++.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|..+|
T Consensus        76 -~~-~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~A  153 (255)
T 3p5m_A           76 -GA-ADAANRVVRAITSLPKPVIAGVHGAAVGFGCSLALACDLVVAAPASYFQLAFTRVGLMPDGGASALLPLLIGRART  153 (255)
T ss_dssp             -HH-HHHHHHHHHHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEECTTCEEECGGGGGTCCCCTTHHHHTHHHHCHHHH
T ss_pred             -HH-HHHHHHHHHHHHhCCCCEEEEeCCeehhhHHHHHHHCCEEEEcCCcEEeCcccccCcCCCccHHHHHHHHhCHHHH
Confidence             12 2235577889999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCcccc
Q 026342          227 CLWWGLKKHVKC  238 (240)
Q Consensus       227 ~ellltG~~i~A  238 (240)
                      ++|+++|+.|+|
T Consensus       154 ~~l~ltg~~~~a  165 (255)
T 3p5m_A          154 SRMAMTAEKISA  165 (255)
T ss_dssp             HHHHHHCCCEEH
T ss_pred             HHHHHcCCCcCH
Confidence            999999999986

>2j5i_A P-hydroxycinnamoyl COA hydratase/lyase; vanillin, aldolase, crotonase, coenzyme-A; 1.8A {Pseudomonas fluorescens} PDB: 2j5i_B 2vss_A* 2j5i_I 2vss_F* 2vsu_A* 2vss_E* 2vsu_F* 2vsu_E* 2vsu_C*

Probab=100.00  E-value=4.1e-43  Score=305.77  Aligned_cols=170  Identities=31%  Similarity=0.450  Sum_probs=147.3

Q ss_pred             CCcceeEEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCC--
Q 026342           65 GTEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDG--  142 (240)
Q Consensus        65 ~~~~~~v~~~~~~~~~v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~--  142 (240)
                      ..+|+.|.+++  +++|++|+||||+++|+||.+|+.+|.++|++++.|+++|+|||+|.| ++||+|+|++++....  
T Consensus         5 ~~~~~~i~~~~--~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g-~~FcaG~Dl~~~~~~~~~   81 (276)
T 2j5i_A            5 EGRWKTVKVEI--EDGIAFVILNRPEKRNAMSPTLNREMIDVLETLEQDPAAGVLVLTGAG-EAWTAGMDLKEYFREVDA   81 (276)
T ss_dssp             TTCCSSEEEEE--ETEEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHTCTTEEEEEEEEST-TCSBCCBCHHHHHHHHHH
T ss_pred             cCCCceEEEEE--eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCC-CCCcCCcChhhHhhcccc
Confidence            35677788888  689999999999999999999999999999999999999999999999 8999999998753211  


Q ss_pred             -ccc-hhhhhhhhHHHH-HHHHHcCCCcEEEEECchhchhhHHHhhhcCEEEEeCCcEEecccccccccCCCchHHHHHh
Q 026342          143 -YAD-YENFGRLNVLDL-QVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSR  219 (240)
Q Consensus       143 -~~~-~~~~~~~~~~~l-~~~i~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~a~f~~pe~~~Gl~p~~g~~~~l~r  219 (240)
                       ... ...+.. ....+ +.++.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++
T Consensus        82 ~~~~~~~~~~~-~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r  160 (276)
T 2j5i_A           82 GPEILQEKIRR-EASQWQWKLLRMYAKPTIAMVNGWCFGGGFSPLVACDLAICADEATFGLSEINWGIPPGNLVSKAMAD  160 (276)
T ss_dssp             SCTTHHHHHHH-HHHHHHTTTTTTCSSCEEEEECSCEEGGGHHHHHHSSEEEEETTCEEECGGGGGTCCCCTTHHHHHHH
T ss_pred             chhHHHHHHHH-HHHHHHHHHHHhCCCCEEEEECCeeehhHHHHHHhCCEEEEcCCCEEeCcccccCCCCcchHHHHHHH
Confidence             000 011111 12232 55788999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCHHHHHHHHhcCCcccc
Q 026342          220 LVSTVQQCLWWGLKKHVKC  238 (240)
Q Consensus       220 lvG~~~a~ellltG~~i~A  238 (240)
                      ++|..+|++|+++|+.|+|
T Consensus       161 ~vG~~~A~~l~ltg~~~~A  179 (276)
T 2j5i_A          161 TVGHRQSLMYIMTGKTFGG  179 (276)
T ss_dssp             HSCHHHHHHHHHHCCEEEH
T ss_pred             HhCHHHHHHHHHhCCcccH
Confidence            9999999999999999986

>1nzy_A Dehalogenase, 4-chlorobenzoyl coenzyme A dehalogenase; lyase; HET: BCA; 1.80A {Pseudomonas SP} SCOP: c.14.1.3 PDB: 1jxz_A* 1nzy_B*

Probab=100.00  E-value=5.5e-43  Score=303.81  Aligned_cols=166  Identities=28%  Similarity=0.362  Sum_probs=147.1

Q ss_pred             eEEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCc---cch
Q 026342           70 DIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGY---ADY  146 (240)
Q Consensus        70 ~v~~~~~~~~~v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~---~~~  146 (240)
                      .|.+++  +++|++|+||||+++|+||.+|+.+|.++|++++.|+++|+|||+|.| ++||+|+|++++.....   ...
T Consensus         4 ~i~~~~--~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~~~~~~~   80 (269)
T 1nzy_A            4 AIGHRV--EDGVAEITIKLPRHRNALSVKAMQEVTDALNRAEEDDSVGAVMITGAE-DAFCAGFYLREIPLDKGVAGVRD   80 (269)
T ss_dssp             SEEEEE--ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEEST-TCSBCCBCGGGSCSSSHHHHHHH
T ss_pred             eEEEEE--ECCEEEEEECCCCccCCCCHHHHHHHHHHHHHHhhCCCeeEEEEECCC-CCcccCcCHHHHhhcccccChHH
Confidence            477777  699999999999999999999999999999999999999999999999 89999999998654210   111


Q ss_pred             h-hhhhhhHHHHHHHHHcCCCcEEEEECchhchhhHHHhhhcCEEEEeCCcEEecccccccccCCCchHHHHHhhcCHHH
Q 026342          147 E-NFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVSTVQ  225 (240)
Q Consensus       147 ~-~~~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~a~f~~pe~~~Gl~p~~g~~~~l~rlvG~~~  225 (240)
                      . ......+.+++.++.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..+
T Consensus        81 ~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~  160 (269)
T 1nzy_A           81 HFRIAALWWHQMIHKIIRVKRPVLAAINGVAAGGGLGISLASDMAICADSAKFVCAWHTIGIGNDTATSYSLARIVGMRR  160 (269)
T ss_dssp             HHHHHHHHHHHHHHHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCHHHHTCCCCTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCEEEEECCeeecHHHHHHHhCCEEEecCCCEEeCcccccCCCCCccHHHHHHHHhhHHH
Confidence            0 011112456788999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCcccc
Q 026342          226 QCLWWGLKKHVKC  238 (240)
Q Consensus       226 a~ellltG~~i~A  238 (240)
                      |++|+++|+.|+|
T Consensus       161 a~~l~ltg~~~~a  173 (269)
T 1nzy_A          161 AMELMLTNRTLYP  173 (269)
T ss_dssp             HHHHHHHCCCBCH
T ss_pred             HHHHHHcCCCCCH
Confidence            9999999999987

>2f6q_A Peroxisomal 3,2-trans-enoyl-COA isomerase; peroxisomes, fatty acid metabolism, STR genomics, structural genomics consortium, SGC; 1.95A {Homo sapiens} SCOP: c.14.1.3

Probab=100.00  E-value=1.4e-42  Score=302.91  Aligned_cols=168  Identities=27%  Similarity=0.394  Sum_probs=145.9

Q ss_pred             cceeEEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccch
Q 026342           67 EFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADY  146 (240)
Q Consensus        67 ~~~~v~~~~~~~~~v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~  146 (240)
                      .++.|.+++  +++|++|+||||+++|+||.+|+.+|.+++++++.|+++ +|||+|.| ++||+|+|++++........
T Consensus        24 ~~~~i~~~~--~~~va~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~v-~vVltg~g-~~FcaG~Dl~~~~~~~~~~~   99 (280)
T 2f6q_A           24 GFETLVVTS--EDGITKIMFNRPKKKNAINTEMYHEIMRALKAASKDDSI-ITVLTGNG-DYYSSGNDLTNFTDIPPGGV   99 (280)
T ss_dssp             ECSSEEEEE--ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHSSCS-EEEEEEST-TCSBCCBCC----CCCTTHH
T ss_pred             CCCeEEEEE--ECCEEEEEECCCCcCCCCCHHHHHHHHHHHHHHhhCCCE-EEEEeCCC-CCcccCCCHHHHhhcCcchh
Confidence            566788887  689999999999999999999999999999999999999 99999999 89999999998654222111


Q ss_pred             hhh---hhhhHHHHHHHHHcCCCcEEEEECchhchhhHHHhhhcCEEEEeCCcEEecccccccccCCCchHHHHHhhcCH
Q 026342          147 ENF---GRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVST  223 (240)
Q Consensus       147 ~~~---~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~a~f~~pe~~~Gl~p~~g~~~~l~rlvG~  223 (240)
                      ...   ....+.+++.++.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|.
T Consensus       100 ~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~  179 (280)
T 2f6q_A          100 EEKAKNNAVLLREFVGCFIDFPKPLIAVVNGPAVGISVTLLGLFDAVYASDRATFHTPFSHLGQSPEGCSSYTFPKIMSP  179 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSCCSCEEEEECSCEETHHHHGGGGCSEEEEETTCEEECCTGGGTCCCCTTHHHHHHHHHCH
T ss_pred             hHHHHHHHHHHHHHHHHHHcCCCCEEEEECCeeehHHHHHHHhCCEEEECCCcEEECchHhhCCCCcccHHHHHHHHhCH
Confidence            111   11124567789999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCcccc
Q 026342          224 VQQCLWWGLKKHVKC  238 (240)
Q Consensus       224 ~~a~ellltG~~i~A  238 (240)
                      .+|++|+++|+.|+|
T Consensus       180 ~~A~~l~ltg~~~~A  194 (280)
T 2f6q_A          180 AKATEMLIFGKKLTA  194 (280)
T ss_dssp             HHHHHHHTTCCCEEH
T ss_pred             HHHHHHHHcCCCCCH
Confidence            999999999999986

>3r9q_A Enoyl-COA hydratase/isomerase; ssgcid, lyase,isomerase; 2.10A {Mycobacterium abscessus} PDB: 3qka_A

Probab=100.00  E-value=1.3e-43  Score=306.68  Aligned_cols=167  Identities=26%  Similarity=0.365  Sum_probs=145.4

Q ss_pred             CcceeEEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccc
Q 026342           66 TEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYAD  145 (240)
Q Consensus        66 ~~~~~v~~~~~~~~~v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~  145 (240)
                      ..++.|.+++  +++|++|+||||+++|+||.+|+.+|.++++.+++|+++|+|||||.| ++||+|+|++++.......
T Consensus         8 ~~m~~v~~~~--~~~va~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~~~   84 (262)
T 3r9q_A            8 EMQPAVRVEK--AGPVTTVILNRPHARNAVDGPTAAALLAAFTEFDADPEASVAVLWGDN-GTFCAGADLKAMGTDRGNE   84 (262)
T ss_dssp             --CCSEEEEE--ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEEST-TCSBCCBCTTTTTSTTSCC
T ss_pred             ccCCEEEEEE--ECCEEEEEECCCCcCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCC-CCccCCcCHHHHhccChhh
Confidence            3456688988  799999999999999999999999999999999999999999999999 8999999999875432211


Q ss_pred             hhhhhhhhHHHHHHHHHcCCCcEEEEECchhchhhHHHhhhcCEEEEeCCcEEecccccccccCCCchHHHHHhhcCHHH
Q 026342          146 YENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVSTVQ  225 (240)
Q Consensus       146 ~~~~~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~a~f~~pe~~~Gl~p~~g~~~~l~rlvG~~~  225 (240)
                      ....   ....+...+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|..+
T Consensus        85 ~~~~---~~~~~~~~~~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~  161 (262)
T 3r9q_A           85 LHPH---GPGPMGPSRLRLSKPVIAAISGHAVAGGIELALWCDLRVVEEDAVLGVFCRRWGVPLIDGGTIRLPRLIGHSR  161 (262)
T ss_dssp             CCTT---SSCTTSSTTCCCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECTHHHHTCCCCSSHHHHHHHHHCHHH
T ss_pred             HHHh---hhhHHHHHHHhCCCCEEEEECCeeehhhhHHHHhCCEEEEeCCCEEecchhccCCCCCccHHHHHHHHhCHHH
Confidence            1100   0111233567999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCcccc
Q 026342          226 QCLWWGLKKHVKC  238 (240)
Q Consensus       226 a~ellltG~~i~A  238 (240)
                      |++|+++|+.|+|
T Consensus       162 A~~l~ltG~~~~A  174 (262)
T 3r9q_A          162 AMDLILTGRPVHA  174 (262)
T ss_dssp             HHHHHHHCCCEEH
T ss_pred             HHHHHHcCCcCCH
Confidence            9999999999986

>3qxz_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.35A {Mycobacterium abscessus} SCOP: c.14.1.0

Probab=100.00  E-value=9.4e-44  Score=308.11  Aligned_cols=168  Identities=27%  Similarity=0.325  Sum_probs=147.8

Q ss_pred             CcceeEEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccc
Q 026342           66 TEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYAD  145 (240)
Q Consensus        66 ~~~~~v~~~~~~~~~v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~  145 (240)
                      ..++.|.+++  +++|++|+||||+++|+||.+|+.+|.++++.+++|+++|+|||+|.| ++||+|+|++++.......
T Consensus         4 ~m~~~v~~~~--~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~~~   80 (265)
T 3qxz_A            4 SMVTELHEEI--RDGVAVLTLHGPSTRNSFTVELGRQLGAAYQRLDDDPAVRVIVLTGAP-PAFCSGAQISAAAETFAAP   80 (265)
T ss_dssp             --CCEEEEEE--ETTEEEEEEECGGGTSCBCHHHHHHHHHHHHHHHHCTTCCEEEEEEST-TEEECCBCSTTCTTCCCCC
T ss_pred             CccceEEEEE--ECCEEEEEEcCCccCCCCCHHHHHHHHHHHHHHhhCCCceEEEEECCC-CccccCcChHHHhhccchh
Confidence            3466788888  799999999999999999999999999999999999999999999999 8999999999865432211


Q ss_pred             hhhhhhhhHHHHHHHHHcCCCcEEEEECchhchhhHHHhhhcCEEEEeCCcEEecccccccccCCCchHHHHHhhcCHHH
Q 026342          146 YENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVSTVQ  225 (240)
Q Consensus       146 ~~~~~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~a~f~~pe~~~Gl~p~~g~~~~l~rlvG~~~  225 (240)
                      ...... . .+++.++.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|..+
T Consensus        81 ~~~~~~-~-~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~  158 (265)
T 3qxz_A           81 RNPDFS-A-SPVQPAAFELRTPVIAAVNGHAIGIGMTLALHADIRILAEEGRYAIPQVRFGVAPDALAHWTLPRLVGTAV  158 (265)
T ss_dssp             CSSCCC-S-CCSSSCGGGSSSCEEEEECSEEETHHHHHHTTSSEEEEETTCCEECCGGGGTSCCCTTHHHHTHHHHHHHH
T ss_pred             HHHHHH-H-HHHHHHHHhCCCCEEEEECCEEehHhHHHHHHCCEEEEcCCCEEECcccccCcCCCccHHHHHHHHhCHHH
Confidence            111111 1 34566789999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCcccc
Q 026342          226 QCLWWGLKKHVKC  238 (240)
Q Consensus       226 a~ellltG~~i~A  238 (240)
                      |++|+++|+.|+|
T Consensus       159 A~~l~ltg~~~~A  171 (265)
T 3qxz_A          159 AAELLLTGASFSA  171 (265)
T ss_dssp             HHHHHHHCCCBCH
T ss_pred             HHHHHHcCCCcCH
Confidence            9999999999987

>3qre_A Enoyl-COA hydratase, ECHA12_1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.40A {Mycobacterium marinum M}

Probab=100.00  E-value=2.2e-43  Score=310.52  Aligned_cols=169  Identities=29%  Similarity=0.345  Sum_probs=139.9

Q ss_pred             cceeEEEEEEeCC-CEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCcccccc---CC
Q 026342           67 EFTDIIYEKAVGE-GIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTR---DG  142 (240)
Q Consensus        67 ~~~~v~~~~~~~~-~v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~---~~  142 (240)
                      .++.|.+++  ++ +|++|+||||+++|+||.+|+.+|.++|+.++.|+++|+|||||.| ++||+|+|++++..   ..
T Consensus        27 ~~~~v~~~~--~~~~Va~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~G-~~FcaG~Dl~~~~~~~~~~  103 (298)
T 3qre_A           27 AQDAVLYEA--TPGGVAIITFNRADRLNAWGPDLAAGFYAAIDRAEADPGIRVIVLTGRG-RGFCAGAYLGSADAAAGYD  103 (298)
T ss_dssp             -CCSEEEEE--CTTSEEEEEECCGGGTTCCCHHHHHHHHHHHHHHHHCTTCCEEEEEEST-TCSEECC------------
T ss_pred             CCCeEEEEE--eCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCC-CCcccCcCHHHHhhccccc
Confidence            456789988  67 9999999999999999999999999999999999999999999999 89999999998653   11


Q ss_pred             ccc----hhhhhhhhHHHHHHHHHcCCCcEEEEECchhchhhHHHhhhcCEEEEeCCcEEecccccccccCCCchHHHHH
Q 026342          143 YAD----YENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMS  218 (240)
Q Consensus       143 ~~~----~~~~~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~a~f~~pe~~~Gl~p~~g~~~~l~  218 (240)
                      ...    ...........++..+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+
T Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~  183 (298)
T 3qre_A          104 KTMAKAKDANLADLVGERPPHFVTMLRKPVIAAINGPCVGIGLTQALMCDVRFAAAGAKFAAVFARRGLIAEFGISWILP  183 (298)
T ss_dssp             -----------------CCTTGGGGSSSCEEEEECSCEETHHHHHHHHSSEEEEETTCEEECCCCHHHHHCTTSHHHHHH
T ss_pred             cccccchhHHHHHHHHHHHHHHHHhCCCCEEEEECCceeecchHHHhhCCEEEEcCCCEEECcccccCCCcchhHHHHHH
Confidence            110    0011111123455678999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhcCHHHHHHHHhcCCcccc
Q 026342          219 RLVSTVQQCLWWGLKKHVKC  238 (240)
Q Consensus       219 rlvG~~~a~ellltG~~i~A  238 (240)
                      |++|..+|++|+++|+.|+|
T Consensus       184 r~vG~~~A~ellltg~~i~A  203 (298)
T 3qre_A          184 RLTSWAVALDLLLSGRTFLA  203 (298)
T ss_dssp             HHSCHHHHHHHHHHCCEEEH
T ss_pred             HhcCHHHHHHHHHcCCCCCH
Confidence            99999999999999999986

>2pbp_A Enoyl-COA hydratase subunit I; B-oxidation, structural genomics, NPPSFA, nationa on protein structural and functional analyses; 1.80A {Geobacillus kaustophilus} PDB: 2qq3_A

Probab=100.00  E-value=8.9e-43  Score=300.82  Aligned_cols=165  Identities=27%  Similarity=0.437  Sum_probs=147.1

Q ss_pred             ceeEEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccchh
Q 026342           68 FTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYE  147 (240)
Q Consensus        68 ~~~v~~~~~~~~~v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~~  147 (240)
                      +..|.+++  +++|++|+||||+++|+||.+|+.+|.++|++++.|+++|+|||+|.| ++||+|+|++++...... ..
T Consensus         4 ~~~v~~~~--~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~~-~~   79 (258)
T 2pbp_A            4 FVSIAARQ--EGAVGIIELARPDVLNALSRQMVAEIVAAVEAFDRNEKVRVIVLTGRG-RAFAAGADIQEMAKDDPI-RL   79 (258)
T ss_dssp             CCSEEEEE--ETTEEEEEECCGGGTTCCCHHHHHHHHHHHHHHHHCTTCCEEEEEEST-TEEECCCCHHHHHTCCHH-HH
T ss_pred             cceEEEEe--eCCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhhCCCceEEEEECCC-CCccCCcCHHHHhcccch-hH
Confidence            45688887  689999999999999999999999999999999999999999999998 899999999876432211 11


Q ss_pred             hhhhhhHHHHHHHHHcCCCcEEEEECchhchhhHHHhhhcCEEEEeCCcEEecccccccccCCCchHHHHHhhcCHHHHH
Q 026342          148 NFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVSTVQQC  227 (240)
Q Consensus       148 ~~~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~a~f~~pe~~~Gl~p~~g~~~~l~rlvG~~~a~  227 (240)
                      .... .+ +++.++.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..+|+
T Consensus        80 ~~~~-~~-~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~  157 (258)
T 2pbp_A           80 EWLN-QF-ADWDRLSIVKTPMIAAVNGLALGGGFELALSCDLIVASSAAEFGFPEVNLGVMPGAGGTQRLTKLIGPKRAL  157 (258)
T ss_dssp             HHHC-TT-HHHHHHHTCCSCEEEEECSEEETHHHHHHHTSSEEEEETTCEEECGGGGGTCCCCSSHHHHHHHHHCHHHHH
T ss_pred             HHHH-HH-HHHHHHHhCCCCEEEEEcCEEEhHHHHHHHhCCEEEEcCCCEEECcccccCCCCcccHHHHHHHHhCHHHHH
Confidence            1111 23 567789999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCcccc
Q 026342          228 LWWGLKKHVKC  238 (240)
Q Consensus       228 ellltG~~i~A  238 (240)
                      +|+++|+.|+|
T Consensus       158 ~l~ltg~~~~a  168 (258)
T 2pbp_A          158 EWLWTGARMSA  168 (258)
T ss_dssp             HHHHHCCCEEH
T ss_pred             HHHHcCCccCH
Confidence            99999999986

>3h81_A Enoyl-COA hydratase ECHA8; niaid, decode, infectious disease, MPCS, fatty acid metaboli metabolism, lyase, structural genomics; 1.80A {Mycobacterium tuberculosis} PDB: 3q0j_A* 3pzk_A 3q0g_A*

Probab=100.00  E-value=6.3e-43  Score=304.80  Aligned_cols=166  Identities=32%  Similarity=0.491  Sum_probs=147.5

Q ss_pred             cceeEEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccch
Q 026342           67 EFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADY  146 (240)
Q Consensus        67 ~~~~v~~~~~~~~~v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~  146 (240)
                      .++.|.+++  +++|++|+||||+++|+||.+|+.+|.++++.++.|+++|+|||+|.| ++||+|+|++++....... 
T Consensus        23 ~~~~v~~~~--~~~va~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~~~-   98 (278)
T 3h81_A           23 TYETILVER--DQRVGIITLNRPQALNALNSQVMNEVTSAATELDDDPDIGAIIITGSA-KAFAAGADIKEMADLTFAD-   98 (278)
T ss_dssp             CCSSEEEEE--ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHTCTTCCEEEEECCS-SEEECCBCSHHHHTCCHHH-
T ss_pred             CCCeEEEEE--ECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCC-CCeecCcCHHHHhccChhh-
Confidence            456799988  689999999999999999999999999999999999999999999987 8999999999875432211 


Q ss_pred             hhhhhhhHHHHHHHHHcCCCcEEEEECchhchhhHHHhhhcCEEEEeCCcEEecccccccccCCCchHHHHHhhcCHHHH
Q 026342          147 ENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVSTVQQ  226 (240)
Q Consensus       147 ~~~~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~a~f~~pe~~~Gl~p~~g~~~~l~rlvG~~~a  226 (240)
                       ......+.. +.++.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|..+|
T Consensus        99 -~~~~~~~~~-~~~l~~~~kPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~lGl~p~~g~~~~L~r~vG~~~A  176 (278)
T 3h81_A           99 -AFTADFFAT-WGKLAAVRTPTIAAVAGYALGGGCELAMMCDVLIAADTAKFGQPEIKLGVLPGMGGSQRLTRAIGKAKA  176 (278)
T ss_dssp             -HHHHTTTGG-GHHHHTCCSCEEEEECBEEETHHHHHHHHSSEEEEETTCEEECGGGGGTCCCCSSHHHHHHHHHCHHHH
T ss_pred             -HHHHHHHHH-HHHHHhCCCCEEEEECCeeehHHHHHHHHCCEEEEcCCCEEECchhhcCcCCCccHHHHHHHHhCHHHH
Confidence             111111122 678999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCcccc
Q 026342          227 CLWWGLKKHVKC  238 (240)
Q Consensus       227 ~ellltG~~i~A  238 (240)
                      ++|+++|+.|+|
T Consensus       177 ~~l~ltG~~~~A  188 (278)
T 3h81_A          177 MDLILTGRTMDA  188 (278)
T ss_dssp             HHHHHHCCCEEH
T ss_pred             HHHHHhCCCcCH
Confidence            999999999986

>3hp0_A Putative polyketide biosynthesis enoyl-COA hydratase homolog PKSH; polyketide synthase, enoyl COA hydratase,isomerase; 2.32A {Bacillus subtilis}

Probab=100.00  E-value=6.4e-43  Score=303.19  Aligned_cols=166  Identities=20%  Similarity=0.284  Sum_probs=145.9

Q ss_pred             cceeEEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCC--cc
Q 026342           67 EFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDG--YA  144 (240)
Q Consensus        67 ~~~~v~~~~~~~~~v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~--~~  144 (240)
                      +++.|.+++  +++|++||||||+++|+||.+|+.+|.++++++++| ++|+|||||.| ++||+|+|++++....  ..
T Consensus         5 ~~~~i~~~~--~~~v~~itlnrP~~~Nal~~~~~~~L~~al~~~~~d-~vr~vVltg~g-~~F~aG~Dl~~~~~~~~~~~   80 (267)
T 3hp0_A            5 TYQTIKVRF--QASVCYITFHRPEANNTINDTLIEECLQVLNQCETS-TVTVVVLEGLP-EVFCFGADFQEIYQEMKRGR   80 (267)
T ss_dssp             CCSSEEEEE--ETTEEEEEECCGGGTTCBCSHHHHHHHHHHHHHHHS-SCCEEEEECCS-SCSBCCBCHHHHHHTTTTTC
T ss_pred             CCceEEEEE--ECCEEEEEECCCCccCCCCHHHHHHHHHHHHHHhcC-CCEEEEEECCC-CceecCcCHHHHHhcccChH
Confidence            456788988  799999999999999999999999999999999987 59999999999 8999999998765421  11


Q ss_pred             chhhhhhhhHHHHHHHHHcCCCcEEEEECchhchhhHHHhhhcCEEEEeCCcEEecccccccccCCCchHHHHHhhcCHH
Q 026342          145 DYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVSTV  224 (240)
Q Consensus       145 ~~~~~~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~a~f~~pe~~~Gl~p~~g~~~~l~rlvG~~  224 (240)
                      ....... .+.+++.++.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++ ++++|+|++|..
T Consensus        81 ~~~~~~~-~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~-g~~~l~r~vG~~  158 (267)
T 3hp0_A           81 KQASSQE-PLYDLWMKLQTGPYVTISHVRGKVNAGGLGFVSATDIAIADQTASFSLSELLFGLYPAC-VLPFLIRRIGRQ  158 (267)
T ss_dssp             CSCCCCH-HHHHHHHHHHHSSSEEEEEECSEEETTHHHHHHHSSEEEECTTCEEECCGGGGTCCCTT-THHHHHHHHCHH
T ss_pred             HHHHHHH-HHHHHHHHHHcCCCCEEEEECCEEeehHHHHHHhCCEEEEcCCCEEECchhccCcCchh-HHHHHHHHhCHH
Confidence            1111111 34577889999999999999999999999999999999999999999999999999977 578999999999


Q ss_pred             HHHHHHhcCCcccc
Q 026342          225 QQCLWWGLKKHVKC  238 (240)
Q Consensus       225 ~a~ellltG~~i~A  238 (240)
                      +|++|++||+.|+|
T Consensus       159 ~A~ellltg~~i~A  172 (267)
T 3hp0_A          159 KAHYMTLMTKPISV  172 (267)
T ss_dssp             HHHHHHHHCCCBCH
T ss_pred             HHHHHHHcCCCCCH
Confidence            99999999999987

>3moy_A Probable enoyl-COA hydratase; ssgcid, seattle structural genomics center for infectious DI enoyl COA, actinobacteria, lyase; 1.50A {Mycobacterium smegmatis}

Probab=100.00  E-value=4.2e-43  Score=303.72  Aligned_cols=166  Identities=31%  Similarity=0.433  Sum_probs=148.5

Q ss_pred             cceeEEEEEEeCCC-EEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccc
Q 026342           67 EFTDIIYEKAVGEG-IAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYAD  145 (240)
Q Consensus        67 ~~~~v~~~~~~~~~-v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~  145 (240)
                      .++.|.+++  +++ |++|+||||+++|+||.+|+.+|.+++++++.|+++|+|||||.| ++||+|+|++++.......
T Consensus         7 ~~~~i~~~~--~~~gv~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~~~   83 (263)
T 3moy_A            7 TYTTIATSR--PVAGVGLIRLDRPDALNALNQTLEAEVLDAARDFDADLEIGAIVVTGSE-RAFAAGADIAEMVTLTPHQ   83 (263)
T ss_dssp             CCSSEEEEC--CSTTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEECCS-SEEEESBCHHHHTTCCHHH
T ss_pred             CCCeEEEEE--eCCeEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhcCCCceEEEEECCC-CCeeCCcChHHHhccCchh
Confidence            356788887  566 999999999999999999999999999999999999999999987 8999999999875432211


Q ss_pred             hhhhhhhhHHHHHHHHHcCCCcEEEEECchhchhhHHHhhhcCEEEEeCCcEEecccccccccCCCchHHHHHhhcCHHH
Q 026342          146 YENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVSTVQ  225 (240)
Q Consensus       146 ~~~~~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~a~f~~pe~~~Gl~p~~g~~~~l~rlvG~~~  225 (240)
                        .. ...+..++.++.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..+
T Consensus        84 --~~-~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~  160 (263)
T 3moy_A           84 --AR-ERNLLSGWDSLTQVRKPIVAAVAGYALGGGCELAMLCDLVIAADTARFGQPEITLGILPGLGGTQRLTRAVGKAK  160 (263)
T ss_dssp             --HH-HTTTTHHHHHHTTCCSCEEEEECBEEETHHHHHHHHSSEEEEETTCEEECGGGGGTCCCSSSTTTHHHHHHCHHH
T ss_pred             --HH-HHHHHHHHHHHHhCCCCEEEEECCEeehHHHHHHHHCCEEEecCCCEEeCcccccCCCCchhHHHHHHHHhCHHH
Confidence              11 222446678999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCcccc
Q 026342          226 QCLWWGLKKHVKC  238 (240)
Q Consensus       226 a~ellltG~~i~A  238 (240)
                      |++|+++|+.|+|
T Consensus       161 A~~l~ltg~~~~a  173 (263)
T 3moy_A          161 AMDLCLTGRSLTA  173 (263)
T ss_dssp             HHHHHHHCCEEEH
T ss_pred             HHHHHHcCCCCCH
Confidence            9999999999986

>2a7k_A CARB; crotonase, antibiotic, beta-lactam, biosynthetic protein; 2.24A {Pectobacterium carotovorum} SCOP: c.14.1.3 PDB: 2a81_A*

Probab=100.00  E-value=1.6e-42  Score=297.96  Aligned_cols=163  Identities=23%  Similarity=0.278  Sum_probs=144.5

Q ss_pred             EEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEee-CCCCCcccCCCccccccCCccch-hh
Q 026342           71 IIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTG-KGTEAFCSGGDQALRTRDGYADY-EN  148 (240)
Q Consensus        71 v~~~~~~~~~v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg-~g~~~FcaG~Dl~~~~~~~~~~~-~~  148 (240)
                      |.+++  +++|++|+||||+++|+||.+|+.+|.+++++++.|+++|+|||+| .| ++||+|+|++++........ ..
T Consensus         2 v~~~~--~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~~g-~~F~aG~Dl~~~~~~~~~~~~~~   78 (250)
T 2a7k_A            2 VFEEN--SDEVRVITLDHPNKHNPFSRTLETSVKDALARANADDSVRAVVVYGGAE-RSFSAGGDFNEVKQLSRSEDIEE   78 (250)
T ss_dssp             EEEEE--ETTEEEEEECCSSTTCBCCHHHHHHHHHHHHHHHHCTTCCEEEEECCTT-SCSBCBSCHHHHHTC-CHHHHHH
T ss_pred             eEEEe--eCCEEEEEecCCCccCCCCHHHHHHHHHHHHHHHhCCCcEEEEEECCCC-CCccCCcCHHHHhhcCchhhHHH
Confidence            55666  6899999999999999999999999999999999999999999999 88 89999999987654221111 11


Q ss_pred             hhhhhHHHHHHHHHcCCCcEEEEECchhchhhHHHhhhcCEEEEeCCcEEecccccccccCCCchHHHHHhhcCHHHHHH
Q 026342          149 FGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVSTVQQCL  228 (240)
Q Consensus       149 ~~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~a~f~~pe~~~Gl~p~~g~~~~l~rlvG~~~a~e  228 (240)
                      +. ..+.+++.++.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++ +|++++|..+|++
T Consensus        79 ~~-~~~~~~~~~i~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~-~l~~~vG~~~a~~  156 (250)
T 2a7k_A           79 WI-DRVIDLYQAVLNVNKPTIAAVDGYAIGMGFQFALMFDQRLMASTANFVMPELKHGIGCSVGAA-ILGFTHGFSTMQE  156 (250)
T ss_dssp             HH-HHHHHHHHHHHTCCSCEEEEECSEEETHHHHHHTTSSEEEEETTCEEECCGGGGTCCCHHHHH-HHHHHHCHHHHHH
T ss_pred             HH-HHHHHHHHHHHcCCCCEEEEECCeEeHHHHHHHHhCCEEEEcCCCEEeCcccccCCCCCcHHH-HHHHHhHHHHHHH
Confidence            11 124567889999999999999999999999999999999999999999999999999999888 9999999999999


Q ss_pred             HHhcCCcccc
Q 026342          229 WWGLKKHVKC  238 (240)
Q Consensus       229 llltG~~i~A  238 (240)
                      |+++|+.|+|
T Consensus       157 l~ltg~~~~a  166 (250)
T 2a7k_A          157 IIYQCQSLDA  166 (250)
T ss_dssp             HHHHCCCBCH
T ss_pred             HHHcCCcccH
Confidence            9999999987

>3rrv_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.45A {Mycobacterium avium subsp}

Probab=100.00  E-value=5.6e-43  Score=304.86  Aligned_cols=167  Identities=25%  Similarity=0.282  Sum_probs=148.3

Q ss_pred             eeEEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccch-h
Q 026342           69 TDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADY-E  147 (240)
Q Consensus        69 ~~v~~~~~~~~~v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~-~  147 (240)
                      +.|.+++  +++|++|+||||++.|+||.+|+.+|.++++.++.|+++|+|||+|.| ++||+|+|++++........ .
T Consensus        28 ~~v~~~~--~~~v~~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~~~~~~  104 (276)
T 3rrv_A           28 TEIDVRA--DGALRIITLNRPDSLNSVNDDLHVGLARLWQRLTDDPTARAAVITGAG-RAFSAGGDFGYLKELSADADLR  104 (276)
T ss_dssp             TTEEEEE--ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEEST-TCSBCCBCHHHHHHHHHCHHHH
T ss_pred             CeEEEEE--ECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCC-CcccCCcCHHHHhhcccchHHH
Confidence            4688888  799999999999999999999999999999999999999999999999 89999999987643211110 0


Q ss_pred             hhhhhhHHHHHHHHHcCCCcEEEEECchhchhhHHHhhhcCEEEEeCCcEEecccccccccCCCchHHHHHhhcCHHHHH
Q 026342          148 NFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVSTVQQC  227 (240)
Q Consensus       148 ~~~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~a~f~~pe~~~Gl~p~~g~~~~l~rlvG~~~a~  227 (240)
                      ......+.+++.++.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..+|+
T Consensus       105 ~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~A~  184 (276)
T 3rrv_A          105 AKTIRDGREIVLGMARCRIPVVAAVNGPAVGLGCSLVALSDIVYIAENAYLADPHVQVGLVAADGGPLTWPLHISLLLAK  184 (276)
T ss_dssp             HHHHHHHHHHHHHHHHCSSCEEEEECSCEETHHHHHHHTSSEEEEETTCEEECCHHHHTCCCCSSHHHHGGGTSCHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCCCEEEEECceeeHHHHHHHHHCCEEEEeCCCEEECchhccCcCCCccHHHHHHHHhCHHHHH
Confidence            11111345778899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCcccc
Q 026342          228 LWWGLKKHVKC  238 (240)
Q Consensus       228 ellltG~~i~A  238 (240)
                      +|+++|+.|+|
T Consensus       185 ellltG~~i~A  195 (276)
T 3rrv_A          185 EYALTGTRISA  195 (276)
T ss_dssp             HHHHHCCCEEH
T ss_pred             HHHHcCCCCCH
Confidence            99999999986

>2vx2_A Enoyl-COA hydratase domain-containing protein 3; isomerase, fatty acid metabolism, transit peptide, lipid Met crontonase, mitochondrion, CAsp; 2.3A {Homo sapiens}

Probab=100.00  E-value=1e-42  Score=304.81  Aligned_cols=168  Identities=27%  Similarity=0.380  Sum_probs=146.7

Q ss_pred             cceeEEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccch
Q 026342           67 EFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADY  146 (240)
Q Consensus        67 ~~~~v~~~~~~~~~v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~  146 (240)
                      +...|.++.  +++|++|+||||+++|+||.+|+.+|.++|+.++.|+++|+|||+|.| ++||+|+|++++........
T Consensus        31 ~~~~v~~~~--~~~V~~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g-~~FcaG~Dl~~~~~~~~~~~  107 (287)
T 2vx2_A           31 EPRPTSARQ--LDGIRNIVLSNPKKRNTLSLAMLKSLQSDILHDADSNDLKVIIISAEG-PVFSSGHDLKELTEEQGRDY  107 (287)
T ss_dssp             -CCSEEEEE--ETTEEEEEECCGGGTTCCCHHHHHHHHHHHHTTTTCTTCCEEEEEESS-SEEECCSCCC-CCGGGCHHH
T ss_pred             CCcceEEEE--ECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEECCC-CCccCCcCHHHHhcccchhH
Confidence            445788888  799999999999999999999999999999999999999999999999 89999999987643211111


Q ss_pred             hhhhhhhHHHHHHHHHcCCCcEEEEECchhchhhHHHhhhcCEEEEeCCcEEecccccccccCCCchHHHHHhhcCHHHH
Q 026342          147 ENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVSTVQQ  226 (240)
Q Consensus       147 ~~~~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~a~f~~pe~~~Gl~p~~g~~~~l~rlvG~~~a  226 (240)
                      .......+.+++.++.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|+++ |+|++|..+|
T Consensus       108 ~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~lGl~p~~g~~~-L~r~vG~~~A  186 (287)
T 2vx2_A          108 HAEVFQTCSKVMMHIRNHPVPVIAMVNGLATAAGCQLVASCDIAVASDKSSFATPGVNVGLFCSTPGVA-LARAVPRKVA  186 (287)
T ss_dssp             HHHHHHHHHHHHHHHHTCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCGGGGTCCCHHHHHH-HHTTSCHHHH
T ss_pred             HHHHHHHHHHHHHHHHhCCCCEEEEECCEEEcHHHHHHHhCCEEEEcCCCEEECchhhhCCCCchHHHH-HHHHhhHHHH
Confidence            111111345678899999999999999999999999999999999999999999999999999998888 9999999999


Q ss_pred             HHHHhcCCcccc
Q 026342          227 CLWWGLKKHVKC  238 (240)
Q Consensus       227 ~ellltG~~i~A  238 (240)
                      ++|+++|+.|+|
T Consensus       187 ~~llltg~~i~A  198 (287)
T 2vx2_A          187 LEMLFTGEPISA  198 (287)
T ss_dssp             HHHHHHCCCEEH
T ss_pred             HHHHHhCCCCCH
Confidence            999999999986

>1pjh_A Enoyl-COA isomerase; ECI1P; beta-BETA-alpha spiral fold, inter-trimer contacts; 2.10A {Saccharomyces cerevisiae} SCOP: c.14.1.3 PDB: 1hno_A 1k39_A* 1hnu_A

Probab=100.00  E-value=1.2e-42  Score=303.36  Aligned_cols=169  Identities=18%  Similarity=0.153  Sum_probs=147.6

Q ss_pred             cceeEEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCc-c-
Q 026342           67 EFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGY-A-  144 (240)
Q Consensus        67 ~~~~v~~~~~~~~~v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~-~-  144 (240)
                      .|+.|.+++  +++|++|+||||+++|+||.+|+.+|.++|+.++.|+++|+|||||.| ++||+|+|++++..... . 
T Consensus         7 ~~~~i~~~~--~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g-~~FcaG~Dl~~~~~~~~~~~   83 (280)
T 1pjh_A            7 QNEKISYRI--EGPFFIIHLINPDNLNALEGEDYIYLGELLELADRNRDVYFTIIQSSG-RFFSSGADFKGIAKAQGDDT   83 (280)
T ss_dssp             CBTTEEEEE--ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEECBT-TBSBCCBCHHHHHC------
T ss_pred             cCCceEEEE--ECCEEEEEECCCcccCCCCHHHHHHHHHHHHHHhcCCCceEEEEECCC-CCccCCcCHHHHhhcccccc
Confidence            456788888  699999999999999999999999999999999999999999999999 89999999987542110 0 


Q ss_pred             ----c-hhhhhh---hhHHHHHHHHHcCCCcEEEEECchhchhhHHHhhhcCEEEEe-CCcEEecccccccccCCCchHH
Q 026342          145 ----D-YENFGR---LNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAA-DNAIFGQTGPKVGSFDAGYGSS  215 (240)
Q Consensus       145 ----~-~~~~~~---~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~lal~~D~rias-~~a~f~~pe~~~Gl~p~~g~~~  215 (240)
                          . ...+..   ....+++.+|.++||||||+|||+|+|||++|+++||+|||+ ++++|++||+++|++|++|+++
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~LalacD~~ia~~~~a~f~~pe~~lGl~p~~g~~~  163 (280)
T 1pjh_A           84 NKYPSETSKWVSNFVARNVYVTDAFIKHSKVLICCLNGPAIGLSAALVALCDIVYSINDKVYLLYPFANLGLITEGGTTV  163 (280)
T ss_dssp             -CCSSHHHHHHHHTHHHHHHHHHHHHHCCSEEEEEECSCEEHHHHHHHHHSSEEEESSTTCEEECCHHHHTCCCCTTHHH
T ss_pred             cchhhhHHHHHHHHHHHHHHHHHHHHhCCCCEEEEECCeeeeHHHHHHHHCCEEEEeCCCCEEeCchhhcCCCCCccHHH
Confidence                1 001111   012466788999999999999999999999999999999999 9999999999999999999999


Q ss_pred             HHHhhcCHHHHHHHHhcCCcccc
Q 026342          216 IMSRLVSTVQQCLWWGLKKHVKC  238 (240)
Q Consensus       216 ~l~rlvG~~~a~ellltG~~i~A  238 (240)
                      +|+|++|..+|++|++||+.|+|
T Consensus       164 ~l~r~vG~~~A~~llltg~~~~a  186 (280)
T 1pjh_A          164 SLPLKFGTNTTYECLMFNKPFKY  186 (280)
T ss_dssp             HHHHHHCHHHHHHHHHTTCCEEH
T ss_pred             HHHHHhCHHHHHHHHHhCCCCCH
Confidence            99999999999999999999986

>3njd_A Enoyl-COA hydratase; ssgcid, mycobacerium smegmatis, structu genomics, seattle structural genomics center for infectious lyase; 1.75A {Mycobacterium smegmatis} PDB: 3njb_A

Probab=100.00  E-value=1.1e-42  Score=310.40  Aligned_cols=168  Identities=24%  Similarity=0.305  Sum_probs=140.9

Q ss_pred             CCcceeEEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCcc
Q 026342           65 GTEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYA  144 (240)
Q Consensus        65 ~~~~~~v~~~~~~~~~v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~  144 (240)
                      ..+|+.|.+++  +++|++|+||||+++|+||.+|+.+|.++|+.++.|++||+|||+|.| ++||+|+|++++......
T Consensus        31 ~~~~~~i~~e~--~~~Va~ItLnrP~~~NAl~~~m~~eL~~al~~~~~d~~vrvvVltG~G-~~FcaG~Dl~~~~~~~~~  107 (333)
T 3njd_A           31 FDNLKTMTYEV--TDRVARITFNRPEKGNAIVADTPLELSALVERADLDPDVHVILVSGRG-EGFCAGFDLSAYAEGSSS  107 (333)
T ss_dssp             TTSCSSEEEEE--ETTEEEEEECCGGGTTCBCTHHHHHHHHHHHHHHHCTTCCEEEEEEST-TSSBCCBC----------
T ss_pred             CCCCCeEEEEE--ECCEEEEEeCCCCccCCCCHHHHHHHHHHHHHHhhCCCcEEEEEECCC-CceecCcCHHHHhhcccc
Confidence            45678899998  799999999999999999999999999999999999999999999999 899999999876432111


Q ss_pred             ch-----------------------------hhhhhhhHHHHHHHHHcCCCcEEEEECchhchhhHHHhhhcCEEEEeCC
Q 026342          145 DY-----------------------------ENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADN  195 (240)
Q Consensus       145 ~~-----------------------------~~~~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~  195 (240)
                      ..                             .......+.+++..|.++||||||+|||+|+|||++|+++||+|||+++
T Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~LalacD~rias~~  187 (333)
T 3njd_A          108 AGGGSPYEGTVLSGKTQALNHLPDEPWDPMVDYQMMSRFVRGFASLMHCDKPTVVKIHGYCVAGGTDIALHADQVIAAAD  187 (333)
T ss_dssp             -----CCTTSTTCHHHHHHTTCSSSCCCHHHHHHHHHHHHHHHTHHHHSSSCEEEEECSEEETHHHHHHTTSSEEEECTT
T ss_pred             cccccccccccccccccccccccccccchhhHHHHHHHHHHHHHHHHhCCCCEEEEECCEEeHHHHHHHHhCCEEEECCC
Confidence            00                             0000112345667899999999999999999999999999999999999


Q ss_pred             cEEecccccccccCCCchHHHHHhhcCHHHHHHHHhcCCcccc
Q 026342          196 AIFGQTGPKVGSFDAGYGSSIMSRLVSTVQQCLWWGLKKHVKC  238 (240)
Q Consensus       196 a~f~~pe~~~Gl~p~~g~~~~l~rlvG~~~a~ellltG~~i~A  238 (240)
                      ++|++||+++|++|+++   +|++++|..+|++|++||+.|+|
T Consensus       188 a~f~~pe~~lG~~P~~g---~l~~~vG~~~A~ellltG~~i~A  227 (333)
T 3njd_A          188 AKIGYPPMRVWGVPAAG---LWAHRLGDQRAKRLLFTGDCITG  227 (333)
T ss_dssp             CEEECGGGGTTCCCTTC---CHHHHHCHHHHHHHHTTCCEEEH
T ss_pred             CeeechhhceeccCHHH---HHHHHHHHHHHHHHHhcCCCCCH
Confidence            99999999999998775   58999999999999999999986

>3h0u_A Putative enoyl-COA hydratase; structural genomics, isomerase, PSI-2, protein structure initiative; 1.50A {Streptomyces avermitilis}

Probab=100.00  E-value=1e-42  Score=305.00  Aligned_cols=170  Identities=19%  Similarity=0.247  Sum_probs=149.4

Q ss_pred             CcceeEEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccc
Q 026342           66 TEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYAD  145 (240)
Q Consensus        66 ~~~~~v~~~~~~~~~v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~  145 (240)
                      .+|+.|.+++  +++|++|+||||+ .|+||.+|+.+|.++++.++.|+++|+|||||.|+++||+|+|++++.......
T Consensus         5 ~~~~~v~~~~--~~~Va~itlnrP~-~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~G~~ff~~G~Dl~~~~~~~~~~   81 (289)
T 3h0u_A            5 ASYETIKARL--DGTVLSATFNAPP-MNLIGPEVVRDLVALLEELAHPTAPRVVIFDSADADFFFPHVDMTKVPEYTAEA   81 (289)
T ss_dssp             CCCSSEEEEE--ETTEEEEEECCTT-TCCBCHHHHHHHHHHHHHTTSTTSCSEEEEEECSSSEEECSBCTTCHHHHHHHH
T ss_pred             CCCCeEEEEE--ECCEEEEEECCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCceeCCcCHHHHhhcCcch
Confidence            4567899988  7999999999998 799999999999999999999999999999999966777888998765321111


Q ss_pred             hhh--hhhhhHHHHHHHHHcCCCcEEEEECchhchhhHHHhhhcCEEEEeCC-cEEecccccccccCCCchHHHHHhhcC
Q 026342          146 YEN--FGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADN-AIFGQTGPKVGSFDAGYGSSIMSRLVS  222 (240)
Q Consensus       146 ~~~--~~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~-a~f~~pe~~~Gl~p~~g~~~~l~rlvG  222 (240)
                      ...  .....+.+++.++.++||||||+|||+|+|||++|+++||+|||+++ ++|++||+++|++|++|++++|+|++|
T Consensus        82 ~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~~a~f~~pe~~lGl~p~~g~~~~L~r~vG  161 (289)
T 3h0u_A           82 AKAGGPGDASLGMLFRKLSQLPAVTIAKLRGRARGAGSEFLLACDMRFASRENAILGQPEVGIGAPPGAGAIQHLTRLLG  161 (289)
T ss_dssp             HTTSSTTCCSHHHHHHHHHTCSSEEEEEECSEEETHHHHHHHHSSEEEEETTTCEEECTHHHHTSCCCSSHHHHHHHHHC
T ss_pred             hhhHHHHHHHHHHHHHHHHhCCCCEEEEECCEeehhhHHHHHhCCEEEEeCCCcEEeCchhhcCCCCCccHHHHHHHHhC
Confidence            000  11113567888999999999999999999999999999999999998 999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCcccc
Q 026342          223 TVQQCLWWGLKKHVKC  238 (240)
Q Consensus       223 ~~~a~ellltG~~i~A  238 (240)
                      ..+|++|+++|+.|+|
T Consensus       162 ~~~A~ellltG~~i~A  177 (289)
T 3h0u_A          162 RGRALEAVLTSSDFDA  177 (289)
T ss_dssp             HHHHHHHHHHCCCEEH
T ss_pred             HHHHHHHHHcCCCCCH
Confidence            9999999999999987

>2ppy_A Enoyl-COA hydratase; beta-oxidation, fatty acid metabol lyase, structural genomics, NPPSFA; 2.16A {Geobacillus kaustophilus}

Probab=100.00  E-value=2.5e-42  Score=299.08  Aligned_cols=165  Identities=22%  Similarity=0.299  Sum_probs=147.3

Q ss_pred             ceeEEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEee-CCCCCcccCCCccccccCCccch
Q 026342           68 FTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTG-KGTEAFCSGGDQALRTRDGYADY  146 (240)
Q Consensus        68 ~~~v~~~~~~~~~v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg-~g~~~FcaG~Dl~~~~~~~~~~~  146 (240)
                      ++.|.+++  +++|++|+|||| ++|+||.+|+.+|.++|+++++|+++|+|||+| .| ++||+|+|++++.. .....
T Consensus         8 ~~~i~~~~--~~~v~~itlnrp-~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~~g-~~F~aG~Dl~~~~~-~~~~~   82 (265)
T 2ppy_A            8 KQYLTVFK--EDGIAEIHLHIN-KSNSYDLEFYKEFNAAIDDIRFDPDIKVVIVMSDVP-KFFSAGADINFLRS-ADPRF   82 (265)
T ss_dssp             CSSEEEEE--ETTEEEEEECSS-TTCCBCHHHHHHHHHHHHHHHTCTTCCEEEEEECST-TEEECCBCHHHHTT-SCHHH
T ss_pred             CCeEEEEe--eCCEEEEEECCC-CCCCCCHHHHHHHHHHHHHHHhCCCcEEEEEEcCCC-CeeeeCcCHHHHhc-cchhH
Confidence            45688887  699999999999 899999999999999999999999999999999 87 89999999987654 11111


Q ss_pred             hhhhhhhH-HHHHHHHHcCCCcEEEEECchhchhhHHHhhhcCEEEEeCCc-EEecccccccccCCCchHHHHHhhcCHH
Q 026342          147 ENFGRLNV-LDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNA-IFGQTGPKVGSFDAGYGSSIMSRLVSTV  224 (240)
Q Consensus       147 ~~~~~~~~-~~l~~~i~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~a-~f~~pe~~~Gl~p~~g~~~~l~rlvG~~  224 (240)
                      ..+ ...+ .+++.+|.++||||||+|||+|+|||++|+++||+|||++++ +|++||+++|++|++|++++|+|++|..
T Consensus        83 ~~~-~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~ag~f~~pe~~~Gl~p~~g~~~~l~~~vG~~  161 (265)
T 2ppy_A           83 KTQ-FCLFCNETLDKIARSPQVYIACLEGHTVGGGLEMALACDLRFMGDEAGKIGLPEVSLGVLAGTGGTQRLARLIGYS  161 (265)
T ss_dssp             HHH-HHHHHHHHHHHHHHSSSEEEEEECSEEETHHHHHHHTSSEEEEETTCCCEECCGGGGTCCCTTTHHHHHHHHHCHH
T ss_pred             HHH-HHHHHHHHHHHHHcCCCCEEEEECCEEeeHHHHHHHhCCEEEEeCCCCEEECcccccCCCCCchHHHHHHHHhCHH
Confidence            111 1124 567889999999999999999999999999999999999999 9999999999999999999999999999


Q ss_pred             HHHHHHhcCCcccc
Q 026342          225 QQCLWWGLKKHVKC  238 (240)
Q Consensus       225 ~a~ellltG~~i~A  238 (240)
                      +|++|+++|+.|+|
T Consensus       162 ~a~~l~ltg~~~~a  175 (265)
T 2ppy_A          162 RALDMNITGETITP  175 (265)
T ss_dssp             HHHHHHHHCCCBCH
T ss_pred             HHHHHHHhCCccCH
Confidence            99999999999986

>3r9t_A ECHA1_1; ssgcid, seattle structural genomics center for infectious DI enoyl-COA hydratase, lyase; 1.75A {Mycobacterium avium subsp} SCOP: c.14.1.0 PDB: 3r9s_A 3r0o_A

Probab=100.00  E-value=5.7e-43  Score=303.51  Aligned_cols=168  Identities=26%  Similarity=0.362  Sum_probs=143.9

Q ss_pred             cceeEEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccch
Q 026342           67 EFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADY  146 (240)
Q Consensus        67 ~~~~v~~~~~~~~~v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~  146 (240)
                      +++.|.+++  +++|++|+||||+++|+||.+|+.+|.+++++++.|+++|+|||||.|+++||+|+|++++........
T Consensus         7 ~~~~v~~~~--~~~v~~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~   84 (267)
T 3r9t_A            7 DAPGALAER--RGNVMVITINRPEARNAINAAVSIGVGDALEEAQHDPEVRAVVLTGAGDKSFCAGADLKAIARRENLYH   84 (267)
T ss_dssp             -CCSEEEEE--ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSSEEECCBCHHHHHTTCCCSC
T ss_pred             CCCcEEEEE--ECCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCceeCCcChHHHhcccchhh
Confidence            456788888  799999999999999999999999999999999999999999999999669999999987654222111


Q ss_pred             hhhhhhhHHHHHHHHHcCCCcEEEEECchhchhhHHHhhhcCEEEEeCCcEEecccccccccCCCchHHHHHhhcCHHHH
Q 026342          147 ENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVSTVQQ  226 (240)
Q Consensus       147 ~~~~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~a~f~~pe~~~Gl~p~~g~~~~l~rlvG~~~a  226 (240)
                      ..........+  .+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|..+|
T Consensus        85 ~~~~~~~~~~~--~~~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~A  162 (267)
T 3r9t_A           85 PDHPEWGFAGY--VRHFIDKPTIAAVNGTALGGGTELALASDLVVADERAQFGLPEVKRGLIAAAGGVFRIAEQLPRKVA  162 (267)
T ss_dssp             TTCGGGCGGGT--TTCCCSSCEEEEECSEECTHHHHHHHHSSEEEEETTCEECCGGGGTTCCCTTTHHHHHHHHSCHHHH
T ss_pred             HHHHhHHHHHH--HHHhCCCCEEEEECCEEEhHHHHHHHhCCEEEEcCCCEEECcccccCCCCCccHHHHHHHHcCHHHH
Confidence            11000000111  2248999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCcccc
Q 026342          227 CLWWGLKKHVKC  238 (240)
Q Consensus       227 ~ellltG~~i~A  238 (240)
                      ++|+++|+.|+|
T Consensus       163 ~~l~ltg~~i~A  174 (267)
T 3r9t_A          163 MRLLLTGEPLSA  174 (267)
T ss_dssp             HHHHHHCCCEEH
T ss_pred             HHHHHcCCCCCH
Confidence            999999999986

>3myb_A Enoyl-COA hydratase; ssgcid, struct genomics, seattle structural genomics center for infectious lyase; 1.55A {Mycobacterium smegmatis}

Probab=100.00  E-value=1.3e-42  Score=304.03  Aligned_cols=164  Identities=30%  Similarity=0.451  Sum_probs=146.4

Q ss_pred             EEEEEEeC--CCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccchhh
Q 026342           71 IIYEKAVG--EGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYEN  148 (240)
Q Consensus        71 v~~~~~~~--~~v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~~~  148 (240)
                      |.+++  +  ++|++|+||||+++|+||.+|+.+|.++|+.++.|+++|+|||+|.| ++||+|+|++++..........
T Consensus        26 v~~~~--~~~~~va~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~G-~~F~aG~Dl~~~~~~~~~~~~~  102 (286)
T 3myb_A           26 LLLQD--RDERGVVTLTLNRPQAFNALSEAMLAALGEAFGTLAEDESVRAVVLAASG-KAFCAGHDLKEMRAEPSREYYE  102 (286)
T ss_dssp             SEEEE--ECTTSEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHTCTTCCEEEEEECS-SCSBCCBCHHHHHSSCCHHHHH
T ss_pred             EEEEE--ecCCCEEEEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCeEEEEEECCC-CCccCCcChhhhhccccHHHHH
Confidence            88887  6  99999999999999999999999999999999999999999999999 8999999999875422111111


Q ss_pred             hhhhhHHHHHHHHHcCCCcEEEEECchhchhhHHHhhhcCEEEEeCCcEEecccccccccCCCchHHHHHhhcCHHHHHH
Q 026342          149 FGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVSTVQQCL  228 (240)
Q Consensus       149 ~~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~a~f~~pe~~~Gl~p~~g~~~~l~rlvG~~~a~e  228 (240)
                      .....+.+++.++.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++ +++++++|+|++|..+|++
T Consensus       103 ~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~lGl~-~~g~~~~L~r~vG~~~A~~  181 (286)
T 3myb_A          103 KLFARCTDVMLAIQRLPAPVIARVHGIATAAGCQLVAMCDLAVATRDARFAVSGINVGLF-CSTPGVALSRNVGRKAAFE  181 (286)
T ss_dssp             HHHHHHHHHHHHHHHSSSCEEEEECSCEETHHHHHHHHSSEEEEETTCEEECGGGGGTCC-CHHHHHHHTTTSCHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCCCEEEEECCeehHHHHHHHHhCCEEEEcCCCEEECcccccCCC-CchHHHHHHHHcCHHHHHH
Confidence            111235677889999999999999999999999999999999999999999999999999 7778999999999999999


Q ss_pred             HHhcCCcccc
Q 026342          229 WWGLKKHVKC  238 (240)
Q Consensus       229 llltG~~i~A  238 (240)
                      |+++|+.|+|
T Consensus       182 llltG~~i~A  191 (286)
T 3myb_A          182 MLVTGEFVSA  191 (286)
T ss_dssp             HHHHCCCEEH
T ss_pred             HHHcCCCCCH
Confidence            9999999986

>4f47_A Enoyl-COA hydratase ECHA19; ssgcid, seattle structural genomics center for infectious DI niaid; 1.75A {Mycobacterium marinum}

Probab=100.00  E-value=4.6e-43  Score=305.67  Aligned_cols=168  Identities=27%  Similarity=0.387  Sum_probs=135.1

Q ss_pred             cceeEEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccch
Q 026342           67 EFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADY  146 (240)
Q Consensus        67 ~~~~v~~~~~~~~~v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~  146 (240)
                      ....|.+++  +++|++|+||||+++|+||.+|+.+|.++++++++|+++|+|||+|.| ++||+|+|++++........
T Consensus        18 ~~~~v~~~~--~~~v~~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~~~~   94 (278)
T 4f47_A           18 SGPDALVEQ--RGHTLIVTMNRPSRRNALSGEMMQIMVEAWDRVDNDPDIRCCILTGAG-GYFCAGMDLKAATKKPPGDS   94 (278)
T ss_dssp             -CCSEEEEE--ETTEEEEEECCGGGTTCCCHHHHHHHHHHHHHHHHCTTCCEEEEEEST-TCCC----------------
T ss_pred             CCCceEEEE--ECCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCC-CcccCCcChHhhhccchhhh
Confidence            345688888  799999999999999999999999999999999999999999999999 79999999998654321111


Q ss_pred             hhhhhhhHHHHHHHHH---cCCCcEEEEECchhchhhHHHhhhcCEEEEeCCcEEecccccccccCCCchHHHHHhhcCH
Q 026342          147 ENFGRLNVLDLQVQIR---RLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVST  223 (240)
Q Consensus       147 ~~~~~~~~~~l~~~i~---~~~kP~IAav~G~a~GgG~~lal~~D~rias~~a~f~~pe~~~Gl~p~~g~~~~l~rlvG~  223 (240)
                      ..... ....++..+.   ++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|.
T Consensus        95 ~~~~~-~~~~~~~~l~~~~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~  173 (278)
T 4f47_A           95 FKDGS-YDPSRIDALLKGRRLKKPLIAAVEGPAIAGGTEILQGTDIRVAAESAKFGISEAKWSLYPMGGSAVRLVRQIPY  173 (278)
T ss_dssp             -------CTTCBTTTTBSCCCSSCEEEEECSEEETHHHHHHTTCSEEEEETTCEEECCGGGGTCCCTTSHHHHHHHHSCH
T ss_pred             HHHHH-HHHHHHHHHHHhcCCCCCEEEEECCEEehHHHHHHHhCCEEEEcCCCEEECcccccCCCCCccHHHHHHHHhCH
Confidence            00000 0112334556   9999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCcccc
Q 026342          224 VQQCLWWGLKKHVKC  238 (240)
Q Consensus       224 ~~a~ellltG~~i~A  238 (240)
                      .+|++|+++|+.|+|
T Consensus       174 ~~a~~l~ltg~~~~a  188 (278)
T 4f47_A          174 TVACDLLLTGRHITA  188 (278)
T ss_dssp             HHHHHHHHHCCCEEH
T ss_pred             HHHHHHHHcCCcCCH
Confidence            999999999999986

>1ef8_A Methylmalonyl COA decarboxylase; lyase; 1.85A {Escherichia coli} SCOP: c.14.1.3 PDB: 1ef9_A*

Probab=100.00  E-value=6.8e-43  Score=302.01  Aligned_cols=166  Identities=22%  Similarity=0.280  Sum_probs=146.3

Q ss_pred             ceeEEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEee-CCCCCcccCCCccccccCCccch
Q 026342           68 FTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTG-KGTEAFCSGGDQALRTRDGYADY  146 (240)
Q Consensus        68 ~~~v~~~~~~~~~v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg-~g~~~FcaG~Dl~~~~~~~~~~~  146 (240)
                      |+.|.+++  +++|++|+||||+++|+||.+|+.+|.++|++++.|+ +|+|||+| .|+++||+|+|++++........
T Consensus         3 ~~~v~~~~--~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~-vr~vVltg~~g~~~F~aG~Dl~~~~~~~~~~~   79 (261)
T 1ef8_A            3 YQYVNVVT--INKVAVIEFNYGRKLNALSKVFIDDLMQALSDLNRPE-IRCIILRAPSGSKVFSAGHDIHELPSGGRDPL   79 (261)
T ss_dssp             CSSEEEEE--ETTEEEEEECCGGGTTCCCHHHHHHHHHHHHHTCSTT-CCEEEEECCTTCSEEECCSCSTTC-----CTT
T ss_pred             cceEEEEE--eCCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhhCC-ceEEEEECCCCCCeeecCcChHhhhccCchhH
Confidence            45688888  6899999999999999999999999999999999999 99999999 88679999999987643211111


Q ss_pred             hhhhhhhHHHHHHHHHcCCCcEEEEECchhchhhHHHhhhcCEEEEeCCcEEecccccccccCCCchHHHHHhhcCHHHH
Q 026342          147 ENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVSTVQQ  226 (240)
Q Consensus       147 ~~~~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~a~f~~pe~~~Gl~p~~g~~~~l~rlvG~~~a  226 (240)
                      . .. ..+.+++.++.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..+|
T Consensus        80 ~-~~-~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a  157 (261)
T 1ef8_A           80 S-YD-DPLRQITRMIQKFPKPIISMVEGSVWGGAFEMIMSSDLIIAASTSTFSMTPVNLGVPYNLVGIHNLTRDAGFHIV  157 (261)
T ss_dssp             C-TT-SHHHHHHHHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCHHHHTCCCCHHHHHTTSSSSCHHHH
T ss_pred             H-HH-HHHHHHHHHHHhCCCCEEEEECCEEEeHhHHHHHhCCEEEecCCCEEeCchhccCCCCCccHHHHHHHHhCHHHH
Confidence            1 11 124567889999999999999999999999999999999999999999999999999999899999999999999


Q ss_pred             HHHHhcCCcccc
Q 026342          227 CLWWGLKKHVKC  238 (240)
Q Consensus       227 ~ellltG~~i~A  238 (240)
                      ++|+++|+.|+|
T Consensus       158 ~~l~ltg~~~~a  169 (261)
T 1ef8_A          158 KELIFTASPITA  169 (261)
T ss_dssp             HHHHHHCCCEEH
T ss_pred             HHHHHcCCccCH
Confidence            999999999986

>3swx_A Probable enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.10A {Mycobacterium abscessus}

Probab=100.00  E-value=1.8e-43  Score=306.33  Aligned_cols=168  Identities=22%  Similarity=0.296  Sum_probs=145.7

Q ss_pred             cceeEEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccch
Q 026342           67 EFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADY  146 (240)
Q Consensus        67 ~~~~v~~~~~~~~~v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~  146 (240)
                      +++.|.+++  +++|++|+||||+++|+||.+|+.+|.++++.+++|+++|+|||||.| +.||+|+|++++........
T Consensus         7 ~~~~v~~~~--~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~~~~   83 (265)
T 3swx_A            7 DYETLRIRR--DGYVLVIGLNRPAKRNAFDKTMLEELALALGEYETDTDLRAAVLYGEG-PLFTAGLDLASVAAEIQGGA   83 (265)
T ss_dssp             CCSSEEEEE--ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEEST-TCSBCCBCHHHHHHHHC--C
T ss_pred             CCceEEEEE--ECCEEEEEECCCcccCCCCHHHHHHHHHHHHHHhhCCCceEEEEECCC-CCcccCcChHHHhhcccchh
Confidence            456789988  799999999999999999999999999999999999999999999999 67999999987643211100


Q ss_pred             hhhhhhhHHHHHHHH-HcCCCcEEEEECchhchhhHHHhhhcCEEEEeCCcEEecccccccccCCCchHHHHHhhcCHHH
Q 026342          147 ENFGRLNVLDLQVQI-RRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVSTVQ  225 (240)
Q Consensus       147 ~~~~~~~~~~l~~~i-~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~a~f~~pe~~~Gl~p~~g~~~~l~rlvG~~~  225 (240)
                      ..+.. ...+++.++ .++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|..+
T Consensus        84 ~~~~~-~~~~~~~~l~~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~  162 (265)
T 3swx_A           84 SLTPE-GGINPWQVDGRQLSKPLLVAVHGKVLTLGIELALAADIVIADETATFAQLEVNRGIYPFGGATIRFPRTAGWGN  162 (265)
T ss_dssp             CCCCT-TCCCTTCCSSCCCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECGGGGGTSCCCSSHHHHHHHHHCHHH
T ss_pred             HHHHH-HHHHHHHHHHHhCCCCEEEEEcCeeehHHHHHHHHCCEEEEcCCCEEECcccccccCCCccHHHHHHHHhhHHH
Confidence            00000 112234567 8999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCcccc
Q 026342          226 QCLWWGLKKHVKC  238 (240)
Q Consensus       226 a~ellltG~~i~A  238 (240)
                      |++|+++|+.|+|
T Consensus       163 A~~l~ltg~~~~a  175 (265)
T 3swx_A          163 AMRWMLTADTFDA  175 (265)
T ss_dssp             HHHHHTTCCCEEH
T ss_pred             HHHHHHcCCcCCH
Confidence            9999999999986

>3l3s_A Enoyl-COA hydratase/isomerase family protein; crotonase superfamily, dimer of trimers, PSI-2, NYSGXRC, structural genomics; 2.32A {Ruegeria pomeroyi}

Probab=100.00  E-value=4.5e-42  Score=297.26  Aligned_cols=166  Identities=24%  Similarity=0.313  Sum_probs=143.6

Q ss_pred             eeEEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCC---ccc
Q 026342           69 TDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDG---YAD  145 (240)
Q Consensus        69 ~~v~~~~~~~~~v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~---~~~  145 (240)
                      +.+.++.. +++|++|+||||++ |+||.+|+.+|.++++.++.|+++|+|||||.| ++||+|+|++++....   ...
T Consensus         6 ~~~~~~~~-~~~v~~itlnrP~~-Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~~~~~~   82 (263)
T 3l3s_A            6 DGLLGEVL-SEGVLTLTLGRAPA-HPLSRAMIAALHDALRRAMGDDHVHVLVIHGPG-RIFCAGHDLKEIGRHRADPDEG   82 (263)
T ss_dssp             --CEEEEE-SSSEEEEEECSTTT-CCCCHHHHHHHHHHHHHHHTCTTCCEEEEECCS-SEEECCSCSCCCCC-----CCS
T ss_pred             cceEEEEe-eCCEEEEEECCCCC-CCCCHHHHHHHHHHHHHHHhCCCceEEEEECCC-CCccCCcChHHHhhcccccccc
Confidence            34566653 79999999999999 999999999999999999999999999999999 8999999999875431   001


Q ss_pred             hhh--hhhhhHHHHHHHHHcCCCcEEEEECchhchhhHHHhhhcCEEEEeCCcEEecccccccccCCCchHHHHHhhcCH
Q 026342          146 YEN--FGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVST  223 (240)
Q Consensus       146 ~~~--~~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~a~f~~pe~~~Gl~p~~g~~~~l~rlvG~  223 (240)
                      ...  .....+.+++.++.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++ +++++++|+|++|.
T Consensus        83 ~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~-~~g~~~~l~r~vG~  161 (263)
T 3l3s_A           83 RAFVTDLFEACSALMLDLAHCPKPTIALVEGIATAAGLQLMAACDLAYASPAARFCLPGVQNGGF-CTTPAVAVSRVIGR  161 (263)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTCSSCEEEEESSEEETHHHHHHHHSSEEEECTTCEEECCTTTTTSC-CHHHHHHHHTTSCH
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCCEEEEECCEEEHHHHHHHHHCCEEEecCCCEEeCchhccCCC-CccHHHHHHHHcCH
Confidence            111  111135677889999999999999999999999999999999999999999999999999 56789999999999


Q ss_pred             HHHHHHHhcCCcccc
Q 026342          224 VQQCLWWGLKKHVKC  238 (240)
Q Consensus       224 ~~a~ellltG~~i~A  238 (240)
                      .+|++|+++|+.|+|
T Consensus       162 ~~A~~l~ltg~~~~A  176 (263)
T 3l3s_A          162 RAVTEMALTGATYDA  176 (263)
T ss_dssp             HHHHHHHHHCCEEEH
T ss_pred             HHHHHHHHcCCCCCH
Confidence            999999999999986

>3pe8_A Enoyl-COA hydratase; emerald biostructures, structural genomics, seattle structur genomics center for infectious disease, ssgcid, lyase; 1.60A {Mycobacterium smegmatis} PDB: 3p85_A* 3qyr_A

Probab=100.00  E-value=7.6e-43  Score=301.01  Aligned_cols=159  Identities=28%  Similarity=0.406  Sum_probs=142.5

Q ss_pred             cceeEEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccch
Q 026342           67 EFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADY  146 (240)
Q Consensus        67 ~~~~v~~~~~~~~~v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~  146 (240)
                      +++.|.+++  +++|++|+||||+++|+||.+|+.+|.+++++++.|+++|+|||+|.| ++||+|+|++++...     
T Consensus         7 ~~~~v~~~~--~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vvltg~g-~~F~aG~Dl~~~~~~-----   78 (256)
T 3pe8_A            7 DSPVLLVDT--TDRVRTLTLNRPQSRNALSAELRSTFFRALSDAQNDDDVDVVIVTGAD-PVFCAGLDLKELGDT-----   78 (256)
T ss_dssp             -CCSEEEEE--ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCSEEEEEEST-TCSBCCBCTTTC--------
T ss_pred             CCCcEEEEE--ECCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEECCC-CCccCCcCHHHHhhh-----
Confidence            456688888  799999999999999999999999999999999999999999999999 799999999976532     


Q ss_pred             hhhhhhhHHHHHHHHHcCCCcEEEEECchhchhhHHHhhhcCEEEEeCCcEEecccccccccCCCchHHHHHhhcCHHHH
Q 026342          147 ENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVSTVQQ  226 (240)
Q Consensus       147 ~~~~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~a~f~~pe~~~Gl~p~~g~~~~l~rlvG~~~a  226 (240)
                      .     .+..+...+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..+|
T Consensus        79 ~-----~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~A  153 (256)
T 3pe8_A           79 T-----ELPDISPKWPDMTKPVIGAINGAAVTGGLELALYCDILIASENAKFADTHARVGLMPTWGLSVRLPQKVGVGLA  153 (256)
T ss_dssp             -----------CCCCCCCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCHHHHTCCCCSSHHHHHHHHHCHHHH
T ss_pred             H-----HHHHHHHHHHhCCCCEEEEECCeeechHHHHHHhCCEEEEcCCCEEECchhhhCCCCcccHHHHHHHhcCHHHH
Confidence            0     11223356789999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCcccc
Q 026342          227 CLWWGLKKHVKC  238 (240)
Q Consensus       227 ~ellltG~~i~A  238 (240)
                      ++|+++|+.|+|
T Consensus       154 ~~l~ltg~~~~a  165 (256)
T 3pe8_A          154 RRMSLTGDYLSA  165 (256)
T ss_dssp             HHHHHHCCCEEH
T ss_pred             HHHHHcCCCCCH
Confidence            999999999986

>1hzd_A AUH, AU-binding protein/enoyl-COA hydratase; RNA-binding protein,enoyl-COA hydratase, riken structural genomics/proteomics initiative, RSGI; 2.20A {Homo sapiens} SCOP: c.14.1.3 PDB: 2zqq_A 2zqr_A

Probab=100.00  E-value=1.6e-42  Score=301.34  Aligned_cols=168  Identities=24%  Similarity=0.392  Sum_probs=146.6

Q ss_pred             eEEEEE--EeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccchh
Q 026342           70 DIIYEK--AVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYE  147 (240)
Q Consensus        70 ~v~~~~--~~~~~v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~~  147 (240)
                      ++.+++  ..+++|++|+||||+++|+||.+|+.+|.++|+.+++|+++|+|||+|.|+++||+|+|++++.........
T Consensus         9 ~~~~~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~   88 (272)
T 1hzd_A            9 ELRVRHLEEENRGIVVLGINRAYGKNSLSKNLIKMLSKAVDALKSDKKVRTIIIRSEVPGIFCAGADLKERAKMSSSEVG   88 (272)
T ss_dssp             SEEEEECCGGGTTEEEEEECCGGGTTCBCTTHHHHHHHHHHHHHHCSSCSEEEEEESBTEEEECCBCHHHHTTSCHHHHH
T ss_pred             cEEEEecccccCCEEEEEEcCCCcCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEecCCCCCCcCCCChhhhhccChHHHH
Confidence            355543  226899999999999999999999999999999999999999999999986799999999876432211111


Q ss_pred             hhhhhhHHHHHHHHHcCCCcEEEEECchhchhhHHHhhhcCEEEEeCCcEEecccccccccCCCchHHHHHhhcCHHHHH
Q 026342          148 NFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVSTVQQC  227 (240)
Q Consensus       148 ~~~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~a~f~~pe~~~Gl~p~~g~~~~l~rlvG~~~a~  227 (240)
                      .+.. .+.+++.+|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|..+|+
T Consensus        89 ~~~~-~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~A~  167 (272)
T 1hzd_A           89 PFVS-KIRAVINDIANLPVPTIAAIDGLALGGGLELALACDIRVAASSAKMGLVETKLAIIPGGGGTQRLPRAIGMSLAK  167 (272)
T ss_dssp             HHHH-HHHHHHHHHHTCSSCEEEEESEEEETHHHHHHHHSSEEEEETTCEEECCGGGGTCCCCSSHHHHHHHHHCHHHHH
T ss_pred             HHHH-HHHHHHHHHHhCCCCEEEEeCceEEecHHHHHHhCCEEEEcCCCEEeCchhccCCCCCchHHHHHHHHhCHHHHH
Confidence            1111 345678899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCcccc
Q 026342          228 LWWGLKKHVKC  238 (240)
Q Consensus       228 ellltG~~i~A  238 (240)
                      +|+++|+.|+|
T Consensus       168 ~l~ltg~~~~a  178 (272)
T 1hzd_A          168 ELIFSARVLDG  178 (272)
T ss_dssp             HHHHHTCEEEH
T ss_pred             HHHHcCCcCCH
Confidence            99999999986

>1dci_A Dienoyl-COA isomerase; lyase; 1.50A {Rattus norvegicus} SCOP: c.14.1.3 PDB: 2vre_A

Probab=100.00  E-value=1.5e-42  Score=301.97  Aligned_cols=169  Identities=23%  Similarity=0.318  Sum_probs=146.8

Q ss_pred             ceeEEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccC-C-c--
Q 026342           68 FTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRD-G-Y--  143 (240)
Q Consensus        68 ~~~v~~~~~~~~~v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~-~-~--  143 (240)
                      |+.|.+++. +++|++|+||||+++|+||.+|+.+|.++|+++++|+++|+|||+|.| ++||+|+|++++... . .  
T Consensus         2 ~~~v~~~~~-~~~v~~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g-~~FcaG~Dl~~~~~~~~~~~~   79 (275)
T 1dci_A            2 YESIQVTSA-QKHVLHVQLNRPEKRNAMNRAFWRELVECFQKISKDSDCRAVVVSGAG-KMFTSGIDLMDMASDILQPPG   79 (275)
T ss_dssp             CSSEEEEEE-ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHTCTTCCEEEEEEST-TCSBCCBCHHHHHHHHTSCCC
T ss_pred             CceEEEEEc-CCCEEEEEECCCcccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCC-CCccCCcChHHHhhccccccc
Confidence            346788763 578999999999999999999999999999999999999999999999 899999999876431 0 0  


Q ss_pred             cch----hhhh--hhhHHHHHHHHHcCCCcEEEEECchhchhhHHHhhhcCEEEEeCCcEEecccccccccCCCchHHHH
Q 026342          144 ADY----ENFG--RLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIM  217 (240)
Q Consensus       144 ~~~----~~~~--~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~a~f~~pe~~~Gl~p~~g~~~~l  217 (240)
                      .+.    ....  ...+.+++.+|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l  159 (275)
T 1dci_A           80 DDVARIAWYLRDLISRYQKTFTVIEKCPKPVIAAIHGGCIGGGVDLISACDIRYCTQDAFFQVKEVDVGLAADVGTLQRL  159 (275)
T ss_dssp             SSHHHHHHHHHHHHHHHHHHHHHHHHSSSCEEEEECSEEETHHHHHHTTSSEEEEETTCEEECCGGGGTSCCCSSHHHHG
T ss_pred             chhhhhhHHHHHHHHHHHHHHHHHHhCCCCEEEEECCeeeHHHHHHHHhCCEEEEeCCCEEeCcccccCCCCCccHHHHH
Confidence            010    0010  1124567788999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhcCH-HHHHHHHhcCCcccc
Q 026342          218 SRLVST-VQQCLWWGLKKHVKC  238 (240)
Q Consensus       218 ~rlvG~-~~a~ellltG~~i~A  238 (240)
                      ++++|. .+|++|++||+.|+|
T Consensus       160 ~r~vG~~~~A~~l~ltg~~~~a  181 (275)
T 1dci_A          160 PKVIGNRSLVNELTFTARKMMA  181 (275)
T ss_dssp             GGTCSCHHHHHHHHHHCCEEEH
T ss_pred             HHHhCcHHHHHHHHHcCCCCCH
Confidence            999999 999999999999986

>3rsi_A Putative enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.00A {Mycobacterium abscessus}

Probab=100.00  E-value=3e-42  Score=298.59  Aligned_cols=165  Identities=23%  Similarity=0.368  Sum_probs=140.8

Q ss_pred             cceeEEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccch
Q 026342           67 EFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADY  146 (240)
Q Consensus        67 ~~~~v~~~~~~~~~v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~  146 (240)
                      +++.|.+++  +++|++|+||||+++|+||.+|+.+|.++|+.++.|+++|+|||||.| ++||+|+|++ ...  ....
T Consensus         7 ~~~~v~~~~--~~~v~~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g-~~F~aG~Dl~-~~~--~~~~   80 (265)
T 3rsi_A            7 AARELLVER--DGPVVILTMNRPHRRNALSTNMVSQFAAAWDEIDHDDGIRAAILTGAG-SAYCVGGDLS-DGW--MVRD   80 (265)
T ss_dssp             --CCEEEEE--ETTEEEEEECCGGGTTCCCHHHHHHHHHHHHHHHHCTTCCEEEEEEST-TCSEECC-------------
T ss_pred             CCCcEEEEE--ECCEEEEEEcCcccccCCCHHHHHHHHHHHHHHHhCCCceEEEEECCC-CCcccCcCCC-ccc--ccch
Confidence            456788988  799999999999999999999999999999999999999999999999 8999999998 221  1111


Q ss_pred             hhhhhhhHHH-HHHHH-H--cCCCcEEEEECchhchhhHHHhhhcCEEEEeCCcEEecccccccccCCCchHHHHHhhcC
Q 026342          147 ENFGRLNVLD-LQVQI-R--RLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVS  222 (240)
Q Consensus       147 ~~~~~~~~~~-l~~~i-~--~~~kP~IAav~G~a~GgG~~lal~~D~rias~~a~f~~pe~~~Gl~p~~g~~~~l~rlvG  222 (240)
                      ..+.. ...+ ++.++ .  ++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|
T Consensus        81 ~~~~~-~~~~~~~~~l~~~~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG  159 (265)
T 3rsi_A           81 GSAPP-LDPATIGKGLLLSHTLTKPLIAAVNGACLGGGCEMLQQTDIRVSDEHATFGLPEVQRGLVPGAGSMVRLKRQIP  159 (265)
T ss_dssp             ----C-CCHHHHHHHTTSSCCCSSCEEEEECSCEETHHHHHHTTCSEEEEETTCEEECGGGGGTCCCTTTHHHHHHHHSC
T ss_pred             HHHHH-HhHHHHHHHHHHhcCCCCCEEEEECCeeeHHHHHHHHHCCEEEecCCCEEECchhccCCCCCccHHHHHHHHhC
Confidence            11111 1234 67788 8  999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCcccc
Q 026342          223 TVQQCLWWGLKKHVKC  238 (240)
Q Consensus       223 ~~~a~ellltG~~i~A  238 (240)
                      ..+|++|+++|+.|+|
T Consensus       160 ~~~a~~l~ltg~~~~a  175 (265)
T 3rsi_A          160 YTKAMEMILTGEPLTA  175 (265)
T ss_dssp             HHHHHHHHHHCCCEEH
T ss_pred             HHHHHHHHHcCCCCCH
Confidence            9999999999999986

>3tlf_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, otholog; 2.15A {Mycobacterium avium subsp} SCOP: c.14.1.0

Probab=100.00  E-value=5.3e-43  Score=304.66  Aligned_cols=166  Identities=30%  Similarity=0.428  Sum_probs=141.0

Q ss_pred             ceeEEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCc----
Q 026342           68 FTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGY----  143 (240)
Q Consensus        68 ~~~v~~~~~~~~~v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~----  143 (240)
                      ++.|.+++  +++|++|+||||+++|+||.+|+.+|.++++.+++|+++|+|||||.| ++||+|+|++++.....    
T Consensus        10 ~~~v~~~~--~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~~~~~   86 (274)
T 3tlf_A           10 FDTIKYEV--DGHTATITLNRPDALNALSPHMITELRAAYHEAENDDRVWLLVVTGTG-RAFCSGADVKEIPEDGKVIYE   86 (274)
T ss_dssp             CSSEEEEE--ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEEST-TEEECCBC-------------
T ss_pred             CCceEEEE--ECCEEEEEECCccccCCCCHHHHHHHHHHHHHHhcCCCeEEEEEeCCC-CCcccCcCHHHHhhccccccc
Confidence            35688888  799999999999999999999999999999999999999999999999 89999999997654222    


Q ss_pred             ---cchhhhhhhhHHHHHHHHHcCCCcEEEEECchhchhhHHHhhhcCEEEEeCCcEEecccccccccCCCchHHHHHhh
Q 026342          144 ---ADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRL  220 (240)
Q Consensus       144 ---~~~~~~~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~a~f~~pe~~~Gl~p~~g~~~~l~rl  220 (240)
                         ........ .+.+++.++.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++| +|++++|+|+
T Consensus        87 ~~~~~~~~~~~-~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p-~g~~~~L~r~  164 (274)
T 3tlf_A           87 RPYLSTYDQWE-APQEGTPPFRTMAKPVLTAVNGICCGAGMDWVTTTDIVIASEQATFFDPHVSIGLVA-GRELVRVSRV  164 (274)
T ss_dssp             -CTTCSGGGGS-CCCTTCCCTTSCCSCEEEEECSEEEGGGHHHHHHSSEEEEETTCEEECCGGGGTCCC-CHHHHHHTTT
T ss_pred             cchhhHHHHHH-HHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEcCCCEEECcccccCccc-chHHHHHHHH
Confidence               00011111 223456678999999999999999999999999999999999999999999999999 8899999999


Q ss_pred             cCHHHHHHHHhcCC--cccc
Q 026342          221 VSTVQQCLWWGLKK--HVKC  238 (240)
Q Consensus       221 vG~~~a~ellltG~--~i~A  238 (240)
                      +|..+|++|+++|+  .|+|
T Consensus       165 vG~~~A~~l~ltg~~~~~~A  184 (274)
T 3tlf_A          165 LPRSIALRMALMGKHERMSA  184 (274)
T ss_dssp             SCHHHHHHHHHHGGGCCEEH
T ss_pred             hCHHHHHHHHHcCCCCccCH
Confidence            99999999999999  9876

>3r6h_A Enoyl-COA hydratase, ECHA3; ssgcid, mycobacerium marinum, structura genomics, seattle structural genomics center for infectious lyase; 1.75A {Mycobacterium marinum M} PDB: 4hc8_A*

Probab=100.00  E-value=4.2e-42  Score=292.53  Aligned_cols=164  Identities=20%  Similarity=0.244  Sum_probs=144.1

Q ss_pred             eeEEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccchhh
Q 026342           69 TDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYEN  148 (240)
Q Consensus        69 ~~v~~~~~~~~~v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~~~  148 (240)
                      +.|.+++  +++|++|+||||+ .|+||.+|+.+|.++++++++| ++|+|||||.| ++||+|+|++++..........
T Consensus         5 ~~v~~~~--~~~v~~itlnrp~-~Nal~~~~~~~L~~al~~~~~d-~vr~vvltg~g-~~F~aG~Dl~~~~~~~~~~~~~   79 (233)
T 3r6h_A            5 GPVTYTH--DDAIGVIRMDDGK-VNVLGPTMQQALNEAIDAADRD-NVGALVIAGNH-RVFSGGFDLKVLTSGEAKPAID   79 (233)
T ss_dssp             CCEEEEE--ETTEEEEEECCSS-SCCCSHHHHHHHHHHHHHHHHH-TCSEEEEECCS-SEEECCSCHHHHC---CHHHHH
T ss_pred             CceEEEE--ECCEEEEEECCCC-CCCCCHHHHHHHHHHHHHHHhC-CCeEEEEECCC-CCccCCcChHHHhccChHHHHH
Confidence            3578887  7999999999985 7999999999999999999988 58999999999 8999999999875432211112


Q ss_pred             hhhhhHHHHHHHHHcCCCcEEEEECchhchhhHHHhhhcCEEEEeCCcEEecccccccccCCCchHHHHHhhcCHHHHHH
Q 026342          149 FGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVSTVQQCL  228 (240)
Q Consensus       149 ~~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~a~f~~pe~~~Gl~p~~g~~~~l~rlvG~~~a~e  228 (240)
                      +.. ...+++.++.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|+++++++|++++|..+|++
T Consensus        80 ~~~-~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~~~~~g~~~l~~~~g~~~a~~  158 (233)
T 3r6h_A           80 MLR-GGFELSYRLLSYPKPVVIACTGHAIAMGAFLLCSGDHRVAAHAYNVQANEVAIGMTIPYAAMEVLKLRLTPSAYQQ  158 (233)
T ss_dssp             HHH-HHHHHHHHHHTCSSCEEEEECSEEETHHHHHHTTSSEEEECTTCCEECCGGGGTCCCCHHHHHHHHHHSCHHHHHH
T ss_pred             HHH-HHHHHHHHHHhCCCCEEEEECCcchHHHHHHHHhCCEEEEeCCcEEECchhhhCCCCCccHHHHHHHHhCHHHHHH
Confidence            222 3467788999999999999999999999999999999999999999999999999988889999999999999999


Q ss_pred             HHhcCCcccc
Q 026342          229 WWGLKKHVKC  238 (240)
Q Consensus       229 llltG~~i~A  238 (240)
                      |+++|+.|+|
T Consensus       159 l~ltg~~~~a  168 (233)
T 3r6h_A          159 AAGLAKTFFG  168 (233)
T ss_dssp             HHHSCCEECH
T ss_pred             HHHcCCcCCH
Confidence            9999999986

>3qk8_A Enoyl-COA hydratase ECHA15; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 1.60A {Mycobacterium marinum M} SCOP: c.14.1.0 PDB: 3q1t_A

Probab=100.00  E-value=7.6e-43  Score=303.46  Aligned_cols=170  Identities=22%  Similarity=0.328  Sum_probs=148.9

Q ss_pred             CcceeEEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccc
Q 026342           66 TEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYAD  145 (240)
Q Consensus        66 ~~~~~v~~~~~~~~~v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~  145 (240)
                      ++++.|.++++ +++|++|+||||+ +|+||.+|+.+|.++++.+++|+++|+|||||.| ++||+|+|++++.......
T Consensus        10 ~~~~~v~~~~~-~~~v~~itlnrp~-~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~~~   86 (272)
T 3qk8_A           10 QDFPSLRFEPG-EHGVLNLVLDSPG-LNSVGPQMHRDLADVWPVIDRDPDVRVVLVRGEG-KAFSSGGSFELIDETIGDY   86 (272)
T ss_dssp             GGCTTEEEEEC-STTEEEEEECCHH-HHEECHHHHHHHHHHHHHHHHCTTCSEEEEEESS-SCSBCEECHHHHHHHHHCH
T ss_pred             CCCCeEEEEEe-CCCEEEEEECCCC-cCCCCHHHHHHHHHHHHHHhhCCCceEEEEECCC-CCeeCCcCHHHHhccccch
Confidence            45677999883 3489999999999 9999999999999999999999999999999999 8999999998764321110


Q ss_pred             hh-hhhhhhHHHHHHHHHcCCCcEEEEECchhchhhHHHhhhcCEEEEeCCcEEecccccccccCCCchHHHHHhhcCHH
Q 026342          146 YE-NFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVSTV  224 (240)
Q Consensus       146 ~~-~~~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~a~f~~pe~~~Gl~p~~g~~~~l~rlvG~~  224 (240)
                      .. ......+.+++.++.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|..
T Consensus        87 ~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~  166 (272)
T 3qk8_A           87 EGRIRIMREARDLVLNLVNLDKPVVSAIRGPAVGAGLVVALLADISVASATAKIIDGHTKLGVAAGDHAAICWPLLVGMA  166 (272)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCCSCEEEEECSEEEHHHHHHHHHSSEEEEETTCEEECCHHHHTSCSCSSHHHHTHHHHCHH
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEcCCCEEECchhccCCCCCccHHHHHHHHhCHH
Confidence            00 01111345778899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCcccc
Q 026342          225 QQCLWWGLKKHVKC  238 (240)
Q Consensus       225 ~a~ellltG~~i~A  238 (240)
                      +|++|+++|+.|+|
T Consensus       167 ~A~~l~ltg~~~~A  180 (272)
T 3qk8_A          167 KAKYYLLTCETLSG  180 (272)
T ss_dssp             HHHHHHHHCCCEEH
T ss_pred             HHHHHHHcCCCCCH
Confidence            99999999999986

>2fbm_A Y chromosome chromodomain protein 1, telomeric IS; acetyltransferase, structural genomics, structural genomics consortium, SGC, unknown function; 2.28A {Homo sapiens} SCOP: c.14.1.3

Probab=100.00  E-value=4.9e-42  Score=300.96  Aligned_cols=169  Identities=21%  Similarity=0.387  Sum_probs=147.3

Q ss_pred             CCcceeEEEEEEeCCCEEEEEEc-CCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCc
Q 026342           65 GTEFTDIIYEKAVGEGIAKITIN-RPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGY  143 (240)
Q Consensus        65 ~~~~~~v~~~~~~~~~v~~Itln-rp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~  143 (240)
                      ..+|+.|.+++  +++|++|+|| ||+++|+||.+|+.+|.++|++++.|+. |+|||||.| ++||+|+|++++.....
T Consensus        19 ~~~~~~v~~~~--~~~v~~itln~rp~~~Nal~~~m~~~L~~al~~~~~d~~-r~vVltg~G-~~FcaG~Dl~~~~~~~~   94 (291)
T 2fbm_A           19 SSTYRDIVVKK--EDGFTQIVLSTRSTEKNALNTEVIKEIVNALNSAAADDS-KLVLFSAAG-SVFCCGLDFGYFVKHLR   94 (291)
T ss_dssp             --CCSSEEEEE--CSSEEEEEECCSSSSTTCBCHHHHHHHHHHHHHHHHSSC-SEEEEEECS-SCSBCCBCHHHHHHHHH
T ss_pred             CCCcceEEEEE--eCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHhcCCC-eEEEEECCC-CCccCCcCHHHHHhccc
Confidence            45777899988  7999999999 6999999999999999999999999875 999999999 89999999987642110


Q ss_pred             cc----hhhhhhhhHHHHHHHHHcCCCcEEEEECchhchhhHHHhhhcCEEEEeCCcEEecccccccccCCCchHHHHHh
Q 026342          144 AD----YENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSR  219 (240)
Q Consensus       144 ~~----~~~~~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~a~f~~pe~~~Gl~p~~g~~~~l~r  219 (240)
                      ..    ...+. ..+.+++.++.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++
T Consensus        95 ~~~~~~~~~~~-~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pe~~lGl~p~~g~~~~L~r  173 (291)
T 2fbm_A           95 NNRNTASLEMV-DTIKNFVNTFIQFKKPIVVSVNGPAIGLGASILPLCDLVWANEKAWFQTPYTTFGQSPDGCSSITFPK  173 (291)
T ss_dssp             HCHHHHHHHHH-HHHHHHHHHHHHCCSCEEEEECSCEETHHHHTGGGSSEEEEETTCEEECCHHHHTCCCCTTHHHHHHH
T ss_pred             ccchhHHHHHH-HHHHHHHHHHHhCCCCEEEEECCeeecHHHHHHHhCCEEEEeCCCEEECcHHhcCCCCcccHHHHHHH
Confidence            00    01111 12456778899999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCHHHHHHHHhcCCcccc
Q 026342          220 LVSTVQQCLWWGLKKHVKC  238 (240)
Q Consensus       220 lvG~~~a~ellltG~~i~A  238 (240)
                      ++|..+|++|++||+.|+|
T Consensus       174 ~vG~~~A~el~ltg~~i~A  192 (291)
T 2fbm_A          174 MMGKASANEMLIAGRKLTA  192 (291)
T ss_dssp             HHCHHHHHHHHTSCCEEEH
T ss_pred             HHhHHHHHHHHHcCCccCH
Confidence            9999999999999999986

>3oc7_A Enoyl-COA hydratase; seattle structural genomics center for infectious disease, S non-pathogenic mycobacterium species, ortholog; 1.50A {Mycobacterium avium} SCOP: c.14.1.0

Probab=100.00  E-value=6.2e-42  Score=296.91  Aligned_cols=166  Identities=24%  Similarity=0.364  Sum_probs=141.8

Q ss_pred             eeEEEE----EEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCcccccc-CCc
Q 026342           69 TDIIYE----KAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTR-DGY  143 (240)
Q Consensus        69 ~~v~~~----~~~~~~v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~-~~~  143 (240)
                      ..+.|+    .  +++|++|+||||+++|+||.+|+.+|.++++.++.|+++|+|||||.| ++||+|+|++++.. ...
T Consensus         7 ~~v~~~~~~~~--~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~~   83 (267)
T 3oc7_A            7 ALVDYAGPAAT--GGPVARLTLNSPHNRNALSTALVSQLHQGLRDASSDPAVRVVVLAHTG-GTFCAGADLSEAGSGGSP   83 (267)
T ss_dssp             SSEEEECHHHH--SSSEEEEEECCGGGTSCBCHHHHHHHHHHHHHHHHCTTCCEEEEEECS-SEEECCBC----------
T ss_pred             cccCCCCccce--eCCEEEEEecCCCccCCCCHHHHHHHHHHHHHHhcCCCceEEEEECCC-CceeCCcCchhhhhccCc
Confidence            457777    5  799999999999999999999999999999999999999999999999 79999999998751 111


Q ss_pred             cchh---hhhhhhHHHHHHHHHcCCCcEEEEECchhchhhHHHhhhcCEEEEeCCcEEecccccccccCCCchHHHHHhh
Q 026342          144 ADYE---NFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRL  220 (240)
Q Consensus       144 ~~~~---~~~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~a~f~~pe~~~Gl~p~~g~~~~l~rl  220 (240)
                      ....   ......+.+++.++.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|+++++++|+ +
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~-~  162 (267)
T 3oc7_A           84 SSAYDMAVERAREMAALMRAIVESRLPVIAAIDGHVRAGGFGLVGACDIAVAGPRSSFALTEARIGVAPAIISLTLLP-K  162 (267)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHHHCSSCEEEEECSEEETTHHHHHHHSSEEEECTTCEEECCGGGGTCCCTTTHHHHTT-T
T ss_pred             hhhhhhHHHHHHHHHHHHHHHHhCCCCEEEEEcCeecccchHHHHHCCEEEEcCCCEEeCcccccCCCcchhHHHHHH-H
Confidence            1110   01112356778899999999999999999999999999999999999999999999999999999999999 9


Q ss_pred             cCHHHHHHHHhcCCcccc
Q 026342          221 VSTVQQCLWWGLKKHVKC  238 (240)
Q Consensus       221 vG~~~a~ellltG~~i~A  238 (240)
                      +|..+|++|+++|+.|+|
T Consensus       163 vG~~~A~~l~ltg~~~~a  180 (267)
T 3oc7_A          163 LSARAAARYYLTGEKFDA  180 (267)
T ss_dssp             SCHHHHHHHHHHCCCBCH
T ss_pred             hCHHHHHHHHHcCCccCH
Confidence            999999999999999986

>2gtr_A CDY-like, chromodomain Y-like protein; structural genomics, structural genomics consortium, SGC, unknown function; 1.90A {Homo sapiens} PDB: 2fw2_A

Probab=100.00  E-value=5.4e-42  Score=296.37  Aligned_cols=167  Identities=21%  Similarity=0.383  Sum_probs=146.1

Q ss_pred             cceeEEEEEEeCCCEEEEEEc-CCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccc
Q 026342           67 EFTDIIYEKAVGEGIAKITIN-RPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYAD  145 (240)
Q Consensus        67 ~~~~v~~~~~~~~~v~~Itln-rp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~  145 (240)
                      .|+.|.+++  +++|++|+|| ||+++|+||.+|+.+|.++|++++.|+. |+|||+|.| ++||+|+|++++.......
T Consensus         3 ~~~~i~~~~--~~~v~~itln~rp~~~Nal~~~~~~~L~~al~~~~~d~~-r~vvltg~g-~~F~aG~Dl~~~~~~~~~~   78 (261)
T 2gtr_A            3 RYRDIVVRK--QDGFTHILLSTKSSENNSLNPEVMREVQSALSTAAADDS-KLVLLSAVG-SVFCCGLDFIYFIRRLTDD   78 (261)
T ss_dssp             CCSSEEEEE--ETTEEEEEECCSSSSTTEECHHHHHHHHHHHHHHHHSSC-SCEEEEESS-SCSBCEECHHHHHHHHHHC
T ss_pred             ccceEEEEE--eCCEEEEEECCCCccCCCCCHHHHHHHHHHHHHHhcCCC-EEEEEecCC-CccccccCchhhhhccccc
Confidence            456688887  7999999999 6999999999999999999999999874 999999999 8999999998764211000


Q ss_pred             ----hhhhhhhhHHHHHHHHHcCCCcEEEEECchhchhhHHHhhhcCEEEEeCCcEEecccccccccCCCchHHHHHhhc
Q 026342          146 ----YENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLV  221 (240)
Q Consensus       146 ----~~~~~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~a~f~~pe~~~Gl~p~~g~~~~l~rlv  221 (240)
                          ...+. ..+.+++.++.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++
T Consensus        79 ~~~~~~~~~-~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~v  157 (261)
T 2gtr_A           79 RKRESTKMA-EAIRNFVNTFIQFKKPIIVAVNGPAIGLGASILPLCDVVWANEKAWFQTPYTTFGQSPDGCSTVMFPKIM  157 (261)
T ss_dssp             HHHHHHHHH-HHHHHHHHHHHHCCSCEEEEECSCEETHHHHTGGGSSEEEEETTCEEECCTTTTTCCCCTTHHHHHHHHH
T ss_pred             hhhHHHHHH-HHHHHHHHHHHhCCCCEEEEECCeEeeHHHHHHHhCCEEEEcCCCEEeCchhccCCCccchHHHHHHHHc
Confidence                01111 1245677889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHhcCCcccc
Q 026342          222 STVQQCLWWGLKKHVKC  238 (240)
Q Consensus       222 G~~~a~ellltG~~i~A  238 (240)
                      |..+|++|++||+.|+|
T Consensus       158 G~~~a~~l~ltg~~~~a  174 (261)
T 2gtr_A          158 GGASANEMLLSGRKLTA  174 (261)
T ss_dssp             CHHHHHHHHHHCCCEEH
T ss_pred             CHHHHHHHHHcCCCCCH
Confidence            99999999999999986

>1wz8_A Enoyl-COA hydratase; lyase, crotonase, hexamer, structural genomics, riken S genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.14.1.3

Probab=100.00  E-value=4.2e-42  Score=297.58  Aligned_cols=166  Identities=20%  Similarity=0.304  Sum_probs=145.6

Q ss_pred             ceeEEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccC-C-ccc
Q 026342           68 FTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRD-G-YAD  145 (240)
Q Consensus        68 ~~~v~~~~~~~~~v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~-~-~~~  145 (240)
                      |+.|.+++. +++|++|+||||+ +|+||.+|+.+|.+++++++.|+++|+|||+|.| ++||+|+|++ +... . ...
T Consensus         9 ~~~v~~~~~-~~~v~~itlnrp~-~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g-~~F~aG~Dl~-~~~~~~~~~~   84 (264)
T 1wz8_A            9 YPGLAFAWP-RPGVLEITFRGEK-LNAMPPALHRGLARVWRDLEAVEGVRAVLLRGEG-GVFSAGGSFG-LIEEMRASHE   84 (264)
T ss_dssp             CTTEEEEEE-ETTEEEEEECCSG-GGCBCHHHHHHHHHHHHHHTTCTTCSEEEEEEGG-GCCBCCBCHH-HHHHHHHCHH
T ss_pred             CCeEEEEEc-cCCEEEEEeCCCC-cCCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCC-CCCcccCccc-cccccccchH
Confidence            345777762 4899999999999 9999999999999999999999999999999999 8999999998 6431 1 000


Q ss_pred             h-hhhhhhhHHHHHHHHHcCCCcEEEEECchhchhhHHHhhhcCEEEEeCCcEEecccccccccCCCchHHHHHhhcCHH
Q 026342          146 Y-ENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVSTV  224 (240)
Q Consensus       146 ~-~~~~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~a~f~~pe~~~Gl~p~~g~~~~l~rlvG~~  224 (240)
                      . ..+. ..+.+++.++.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|..
T Consensus        85 ~~~~~~-~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~  163 (264)
T 1wz8_A           85 ALLRVF-WEARDLVLGPLNFPRPVVAAVEKVAVGAGLALALAADIAVVGKGTRLLDGHLRLGVAAGDHAVLLWPLLVGMA  163 (264)
T ss_dssp             HHHHHH-HHHHHHHHHHHHSSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCHHHHTSCCTTTHHHHTHHHHCHH
T ss_pred             HHHHHH-HHHHHHHHHHHcCCCCEEEEECCeeechhHHHHHhCCEEEecCCCEEeCchhhcCcCCCccHHHHHHHHhCHH
Confidence            0 1111 1345778899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCcccc
Q 026342          225 QQCLWWGLKKHVKC  238 (240)
Q Consensus       225 ~a~ellltG~~i~A  238 (240)
                      +|++|+++|+.|+|
T Consensus       164 ~a~~l~ltg~~~~a  177 (264)
T 1wz8_A          164 KAKYHLLLNEPLTG  177 (264)
T ss_dssp             HHHHHHHHTCCEEH
T ss_pred             HHHHHHHcCCCCCH
Confidence            99999999999986

>3isa_A Putative enoyl-COA hydratase/isomerase; structural genomics, PSI-2, protein structure initiative, EN hydratase; 1.76A {Bordetella parapertussis}

Probab=100.00  E-value=2.5e-41  Score=291.18  Aligned_cols=160  Identities=22%  Similarity=0.309  Sum_probs=142.0

Q ss_pred             EEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccchhhhh
Q 026342           71 IIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFG  150 (240)
Q Consensus        71 v~~~~~~~~~v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~~~~~  150 (240)
                      |.+++  +++|++|+||||+++|+||.+|+.+|.++++.+++ +++|+|||+|.| ++||+|+|++++............
T Consensus         9 v~~~~--~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~-~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~~~~~~~~   84 (254)
T 3isa_A            9 LAIER--RPAAWTFTLSRPEKRNALSAELVEALIDGVDAAHR-EQVPLLVFAGAG-RNFSAGFDFTDYETQSEGDLLLRM   84 (254)
T ss_dssp             EEEEE--CSSEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHH-TTCSEEEEEEST-TCSCCCBCCTTCTTSCHHHHHHHH
T ss_pred             EEEEE--ECCEEEEEECCCCcCCCCCHHHHHHHHHHHHHhhc-CCcEEEEEECCC-CceeeCcChHHhhccCchhHHHHH
Confidence            88887  79999999999999999999999999999999987 589999999999 899999999987543221111111


Q ss_pred             hhhHHHHHHHHHcCCCcEEEEECchhchhhHHHhhhcCEEEEeCCcEEecccccccccCCCchHHHHHhhcCHHHHHHHH
Q 026342          151 RLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVSTVQQCLWW  230 (240)
Q Consensus       151 ~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~a~f~~pe~~~Gl~p~~g~~~~l~rlvG~~~a~ell  230 (240)
                       ..+.+++.++.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|   ++++|++++|..+|++|+
T Consensus        85 -~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p---g~~~l~~~vG~~~A~~l~  160 (254)
T 3isa_A           85 -VRIEMLLQRVAGSPSLTLALAHGRNFGAGVDLFAACKWRYCTPEAGFRMPGLKFGLVL---GTRRFRDIVGADQALSIL  160 (254)
T ss_dssp             -HHHHHHHHHHHTCSSEEEEEECSEEETHHHHHHHHSSEEEECTTCEEECCGGGGTCCC---SHHHHHHHHCHHHHHHHH
T ss_pred             -HHHHHHHHHHHhCCCCEEEEECCeEeecchhHHHhCCEEEEcCCCEEECchhccCccH---HHHHHHHHcCHHHHHHHH
Confidence             1345678899999999999999999999999999999999999999999999999997   478999999999999999


Q ss_pred             hcCCcccc
Q 026342          231 GLKKHVKC  238 (240)
Q Consensus       231 ltG~~i~A  238 (240)
                      ++|+.|+|
T Consensus       161 ltg~~~~a  168 (254)
T 3isa_A          161 GSARAFDA  168 (254)
T ss_dssp             TTTCEEEH
T ss_pred             HhCCCCcH
Confidence            99999986

>2j5g_A ALR4455 protein; enzyme evolution, C-C bond hydrolase, hydrolase, lyase, crotonase, biocatalysis, beta-diketone; 1.46A {Anabaena SP} PDB: 2j5s_A* 2j5g_D

Probab=100.00  E-value=7e-42  Score=296.02  Aligned_cols=169  Identities=18%  Similarity=0.223  Sum_probs=148.5

Q ss_pred             CCcceeEEEEEEeCC-CEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCc
Q 026342           65 GTEFTDIIYEKAVGE-GIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGY  143 (240)
Q Consensus        65 ~~~~~~v~~~~~~~~-~v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~  143 (240)
                      ...|+.|.+++  ++ +|++|+||||++.|+||.+|+.+|.++|++++.|+++|+|||+|.| ++||+|+|++++.....
T Consensus        19 ~~~~~~i~~~~--~~~~Va~ItLnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g-~~FcaG~Dl~~~~~~~~   95 (263)
T 2j5g_A           19 FTKYENLHFHR--DENGILEVRMHTNGSSLVFTGKTHREFPDAFYDISRDRDNRVVILTGSG-DAWMAEIDFPSLGDVTN   95 (263)
T ss_dssp             GGSCTTEEEEE--CTTCEEEEEECBTTBSCEECHHHHHHHHHHHHHHHHCTTCCEEEEECBT-TEEECEECSGGGCCTTS
T ss_pred             cCCCCeEEEEE--cCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHhCCCcEEEEEECCC-CCcccCcCHHHHhccCC
Confidence            34566788888  67 9999999999999999999999999999999999999999999999 89999999998653211


Q ss_pred             cch-hhhhhhhHHHHHHHHHcCCCcEEEEECchhchhhHHHhhhcCEEEEeCCcEEec-ccccccccCCCchHHHHHhhc
Q 026342          144 ADY-ENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQ-TGPKVGSFDAGYGSSIMSRLV  221 (240)
Q Consensus       144 ~~~-~~~~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~a~f~~-pe~~~Gl~p~~g~~~~l~rlv  221 (240)
                      ... ..+.. .+.+++.++.++||||||+|||+|+ ||++|+++||+|||+++++|++ ||+++|++|++|++++|+|++
T Consensus        96 ~~~~~~~~~-~~~~~~~~l~~~~kPvIAav~G~a~-GG~~LalacD~ria~~~a~f~~~pe~~lGl~p~~g~~~~L~r~v  173 (263)
T 2j5g_A           96 PREWDKTYW-EGKKVLQNLLDIEVPVISAVNGAAL-LHSEYILTTDIILASENTVFQDMPHLNAGIVPGDGVHILWPLAL  173 (263)
T ss_dssp             HHHHHHHHH-HHHHHHHHHHTCCSCEEEEECSEEC-SCGGGGGGCSEEEEETTCEECCCHHHHHTCCCCSSHHHHHHHHH
T ss_pred             HHHHHHHHH-HHHHHHHHHHhCCCCEEEEECCcch-HHHHHHHhCCEEEEcCCCEEecCcccccccCCCccHHHHHHHHc
Confidence            111 11111 2456778899999999999999999 5999999999999999999999 999999999999999999999


Q ss_pred             CHHHHHHHHhcCCcccc
Q 026342          222 STVQQCLWWGLKKHVKC  238 (240)
Q Consensus       222 G~~~a~ellltG~~i~A  238 (240)
                      |..+|++|+++|+.|+|
T Consensus       174 G~~~A~~llltG~~~~A  190 (263)
T 2j5g_A          174 GLYRGRYFLFTQEKLTA  190 (263)
T ss_dssp             HHHHHHHHHHTTCCEEH
T ss_pred             CHHHHHHHHHcCCCCCH
Confidence            99999999999999986

>3t3w_A Enoyl-COA hydratase; ssgcid, structural genomics, seattle ST genomics center for infectious disease, lyase; 1.80A {Mycobacterium thermoresistibile} PDB: 3ome_A

Probab=100.00  E-value=9.4e-42  Score=297.60  Aligned_cols=168  Identities=27%  Similarity=0.345  Sum_probs=139.6

Q ss_pred             CcceeEEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCcc-
Q 026342           66 TEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYA-  144 (240)
Q Consensus        66 ~~~~~v~~~~~~~~~v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~-  144 (240)
                      .+++.|.+++  +++|++|+||||+++|+||.+|+.+|.++|+.++.|+++|+|||+|.| ++||+|+|++++...... 
T Consensus        17 ~~~~~v~~~~--~~~v~~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~G-~~F~aG~Dl~~~~~~~~~~   93 (279)
T 3t3w_A           17 RTEMYIDYDV--SDRIATITLNRPEAANAQNPELLDELDAAWTRAAEDNDVSVIVLRANG-KHFSAGHDLRGGGPVPDKL   93 (279)
T ss_dssp             --CCSEEEEE--ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEECS-SCSBCCBCCC--------C
T ss_pred             ccCCeEEEEE--ECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCC-CceeeccChHhhhhccccc
Confidence            4567899998  799999999999999999999999999999999999999999999999 899999999976543211 


Q ss_pred             chh-hh--hhhhHHHHHHHHHcCCCcEEEEECchhchhhHHHhhhcCEEEEeCCcEEecccccccccCCCchHHHHHhhc
Q 026342          145 DYE-NF--GRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLV  221 (240)
Q Consensus       145 ~~~-~~--~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~a~f~~pe~~~Gl~p~~g~~~~l~rlv  221 (240)
                      ... ..  ....+.+++.++.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|+. +.++.. +++++
T Consensus        94 ~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~-~~~~~~-~~~~v  171 (279)
T 3t3w_A           94 TLEFIYAHESRRYLEYSLRWRNVPKPSIAAVQGRCISGGLLLCWPCDLIIAAEDALFSDPVVLMDIG-GVEYHG-HTWEL  171 (279)
T ss_dssp             CHHHHHHHHHHHTHHHHHHHHHCSSCEEEEECSEEEGGGHHHHTTSSEEEEETTCEEECCGGGGTCS-SCSSCC-HHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHHhCCCCEEEEECCeEhHHHHHHHHhCCEEEecCCCEEeCcHHhcCCC-CchHHH-HHhhc
Confidence            111 11  11123456788999999999999999999999999999999999999999999999994 443433 39999


Q ss_pred             CHHHHHHHHhcCCcccc
Q 026342          222 STVQQCLWWGLKKHVKC  238 (240)
Q Consensus       222 G~~~a~ellltG~~i~A  238 (240)
                      |..+|++|+++|++|+|
T Consensus       172 G~~~A~~llltG~~i~A  188 (279)
T 3t3w_A          172 GPRKAKEILFTGRAMTA  188 (279)
T ss_dssp             CHHHHHHHHHHCCCEEH
T ss_pred             CHHHHHHHHHcCCccCH
Confidence            99999999999999986

>1szo_A 6-oxocamphor hydrolase; enzyme-product complex; HET: CAX; 1.90A {Rhodococcus SP} SCOP: c.14.1.3 PDB: 1o8u_A

Probab=100.00  E-value=1.7e-41  Score=292.72  Aligned_cols=166  Identities=19%  Similarity=0.281  Sum_probs=146.4

Q ss_pred             ceeEEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccchh
Q 026342           68 FTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYE  147 (240)
Q Consensus        68 ~~~v~~~~~~~~~v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~~  147 (240)
                      |+.|.+++  +++|++|+||||++.|+||.+|+.+|.++|+.++.|+++|+|||||.| ++||+|+|++++.........
T Consensus        15 ~~~i~~~~--~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~~~~~   91 (257)
T 1szo_A           15 YENIRLER--DGGVLLVTVHTEGKSLVWTSTAHDELAYCFHDIACDRENKVVILTGTG-PSFCNEIDFTSFNLGTPHDWD   91 (257)
T ss_dssp             CTTEEEEE--ETTEEEEEECBTTBSCEECHHHHHHHHHHHHHHHHCTTCCEEEEECBT-TBSBCEECGGGSCCSSHHHHH
T ss_pred             CceEEEEE--ECCEEEEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCceEEEEEcCC-CccccCcCchhhhcCCHHHHH
Confidence            34688887  689999999999999999999999999999999999999999999999 799999999886432111111


Q ss_pred             hhhhhhHHHHHHHHHcCCCcEEEEECchhchhhHHHhhhcCEEEEeCCcEEec-ccccccccCCCchHHHHHhhcCHHHH
Q 026342          148 NFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQ-TGPKVGSFDAGYGSSIMSRLVSTVQQ  226 (240)
Q Consensus       148 ~~~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~a~f~~-pe~~~Gl~p~~g~~~~l~rlvG~~~a  226 (240)
                      .... .+.+++.++.++||||||+|||+|+| |++|+++||+|||+++++|++ ||+++|++|++|++++|++++|..+|
T Consensus        92 ~~~~-~~~~~~~~l~~~~kPvIAav~G~a~G-G~~LalacD~ria~~~a~f~~~pe~~lGl~p~~g~~~~l~r~vG~~~A  169 (257)
T 1szo_A           92 EIIF-EGQRLLNNLLSIEVPVIAAVNGPVTN-APEIPVMSDIVLAAESATFQDGPHFPSGIVPGDGAHVVWPHVLGSNRG  169 (257)
T ss_dssp             HHHH-HHHHHHHHHHHCCSCEEEEECSCBCS-STHHHHTSSEEEEETTCEEECTTSGGGTCCCTTTHHHHHHHHHCHHHH
T ss_pred             HHHH-HHHHHHHHHHcCCCcEEEEECCchHH-HHHHHHHCCEEEEeCCCEEecCcccccccCCCccHHHHHHHHcCHHHH
Confidence            1111 24567788999999999999999995 999999999999999999999 99999999999999999999999999


Q ss_pred             HHHHhcCCcccc
Q 026342          227 CLWWGLKKHVKC  238 (240)
Q Consensus       227 ~ellltG~~i~A  238 (240)
                      ++|+++|+.|+|
T Consensus       170 ~~llltG~~~~A  181 (257)
T 1szo_A          170 RYFLLTGQELDA  181 (257)
T ss_dssp             HHHHHTTCEEEH
T ss_pred             HHHHHcCCCCCH
Confidence            999999999986

>3bpt_A 3-hydroxyisobutyryl-COA hydrolase; coenzyme A, beta-hydroxyisobutyryl acid, querceti structural genomics consortium, SGC; HET: QUE; 1.50A {Homo sapiens}

Probab=100.00  E-value=1.1e-41  Score=307.28  Aligned_cols=165  Identities=23%  Similarity=0.356  Sum_probs=145.6

Q ss_pred             eEEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccC---Cccch
Q 026342           70 DIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRD---GYADY  146 (240)
Q Consensus        70 ~v~~~~~~~~~v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~---~~~~~  146 (240)
                      .|.+++  +++|++|+||||+++|+||.+|+.+|.++|+.++.|+++|+|||||.|+++||+|+|++++...   .....
T Consensus         7 ~v~~~~--~~~v~~itLnrP~~~Nal~~~m~~~L~~al~~~~~d~~vr~vVltG~g~~~FcaG~Dl~~~~~~~~~~~~~~   84 (363)
T 3bpt_A            7 EVLLGK--KGCTGVITLNRPKFLNALTLNMIRQIYPQLKKWEQDPETFLIIIKGAGGKAFCAGGDIRVISEAEKAKQKIA   84 (363)
T ss_dssp             SEEEEE--ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEETTSSEEECCBCHHHHHHHHTSSCCCH
T ss_pred             ceEEEE--ECCEEEEEEcCCCcCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEECCCCCcccCCcCHHHHHhhcccccHHH
Confidence            477877  7999999999999999999999999999999999999999999999986899999999876421   11111


Q ss_pred             hhhhhhhHHHHHHHHHcCCCcEEEEECchhchhhHHHhhhcCEEEEeCCcEEecccccccccCCCchHHHHHhhcCHHHH
Q 026342          147 ENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVSTVQQ  226 (240)
Q Consensus       147 ~~~~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~a~f~~pe~~~Gl~p~~g~~~~l~rlvG~~~a  226 (240)
                      ..+.. ...+++.++.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|. +|
T Consensus        85 ~~~~~-~~~~~~~~l~~~~kPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~~g~-~a  162 (363)
T 3bpt_A           85 PVFFR-EEYMLNNAVGSCQKPYVALIHGITMGGGVGLSVHGQFRVATEKCLFAMPETAIGLFPDVGGGYFLPRLQGK-LG  162 (363)
T ss_dssp             HHHHH-HHHHHHHHHHTCSSCEEEEECSEEETHHHHTTTTSSEEEECTTCEEECCGGGTTSCCCTTHHHHHHHSSTT-HH
T ss_pred             HHHHH-HHHHHHHHHHhCCCCEEEEECCEEehHHHHHHHhCCEEEEcCCeEEeCCccccCCCCCchHHHHHHHhhHH-HH
Confidence            11111 23466788999999999999999999999999999999999999999999999999999999999999997 99


Q ss_pred             HHHHhcCCcccc
Q 026342          227 CLWWGLKKHVKC  238 (240)
Q Consensus       227 ~ellltG~~i~A  238 (240)
                      ++|++||+.|+|
T Consensus       163 ~~l~ltg~~i~A  174 (363)
T 3bpt_A          163 YFLALTGFRLKG  174 (363)
T ss_dssp             HHHHHHCCCEET
T ss_pred             HHHHHcCCCCCH
Confidence            999999999987

>1sg4_A 3,2-trans-enoyl-COA isomerase, mitochondrial; crotonase fold; HET: CO8; 1.30A {Homo sapiens} SCOP: c.14.1.3 PDB: 1xx4_A

Probab=100.00  E-value=1.5e-41  Score=293.48  Aligned_cols=164  Identities=18%  Similarity=0.263  Sum_probs=144.0

Q ss_pred             EEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccchhhhh
Q 026342           71 IIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFG  150 (240)
Q Consensus        71 v~~~~~~~~~v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~~~~~  150 (240)
                      |.++.  +++|++|+||||+ .|+||.+|+.+|.++|++++.|+++|+|||+|.|+++||+|+|++++..........+.
T Consensus         7 v~~~~--~~~v~~itlnrp~-~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~~g~~F~aG~Dl~~~~~~~~~~~~~~~   83 (260)
T 1sg4_A            7 VEPDA--GAGVAVMKFKNPP-VNSLSLEFLTELVISLEKLENDKSFRGVILTSDRPGVFSAGLDLTEMCGRSPAHYAGYW   83 (260)
T ss_dssp             EEEET--TTTEEEEEECCTT-TTEECHHHHHHHHHHHHHHHHCTTCCEEEEEESSTEESCCEECGGGGSSCCHHHHHHHH
T ss_pred             EEEEe--cCCEEEEEECCCC-CCCCCHHHHHHHHHHHHHHHhCCCceEEEEEcCCCCceEcCcCHHHHhccCHHHHHHHH
Confidence            44544  7899999999997 79999999999999999999999999999999944899999999986532211111111


Q ss_pred             hhhHHHHHHHHHcCCCcEEEEECchhchhhHHHhhhcCEEEEe--CCcEEecccccccccCCCchHHHHHhhcCHHHHHH
Q 026342          151 RLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAA--DNAIFGQTGPKVGSFDAGYGSSIMSRLVSTVQQCL  228 (240)
Q Consensus       151 ~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~lal~~D~rias--~~a~f~~pe~~~Gl~p~~g~~~~l~rlvG~~~a~e  228 (240)
                      . .+.+++.+|.++||||||+|||+|+|||++|+++||+|||+  ++++|++||+++|++|++|++++|++++|..+|++
T Consensus        84 ~-~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~  162 (260)
T 1sg4_A           84 K-AVQELWLRLYQSNLVLVSAINGACPAGGCLVALTCDYRILADNPRYCIGLNETQLGIIAPFWLKDTLENTIGHRAAER  162 (260)
T ss_dssp             H-HHHHHHHHHHTCSSEEEEEECEEBCHHHHHHHTTSSEEEEECCTTCCBSCCGGGGTCCCCHHHHHHHHHHHCHHHHHH
T ss_pred             H-HHHHHHHHHHcCCCCEEEEECCeeehHHHHHHHhCCEEEEecCCCCEEeCchhhhCCCCchhHHHHHHHHhCHHHHHH
Confidence            1 34577889999999999999999999999999999999999  89999999999999999999999999999999999


Q ss_pred             HHhcCCcccc
Q 026342          229 WWGLKKHVKC  238 (240)
Q Consensus       229 llltG~~i~A  238 (240)
                      |+++|+.|+|
T Consensus       163 llltg~~~~a  172 (260)
T 1sg4_A          163 ALQLGLLFPP  172 (260)
T ss_dssp             HHHHTCCBCH
T ss_pred             HHHcCCcCCH
Confidence            9999999986

>3qxi_A Enoyl-COA hydratase ECHA1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.20A {Mycobacterium marinum}

Probab=100.00  E-value=5.1e-42  Score=297.21  Aligned_cols=165  Identities=29%  Similarity=0.419  Sum_probs=137.5

Q ss_pred             CCcceeEEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCcc
Q 026342           65 GTEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYA  144 (240)
Q Consensus        65 ~~~~~~v~~~~~~~~~v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~  144 (240)
                      ...++.|.+++  +++|++|+||||+++|+||.+|+.+|.+++++++.|+++|+|||+|.| ++||+|+|++++......
T Consensus        11 ~~~~~~v~~~~--~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~~   87 (265)
T 3qxi_A           11 GDTEPEVLVEQ--RDRILIITINRPKAKNSVNAAVSRALADAMDRLDADAGLSVGILTGAG-GSFCAGMDLKAFARGENV   87 (265)
T ss_dssp             ----CCEEEEE--ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEEST-TCCCCSBC-------CCC
T ss_pred             CCCCCeEEEEE--ECCEEEEEECCCCcCCCCCHHHHHHHHHHHHHHHhCCCcEEEEEECCC-CCeeCCCChhhhhccchh
Confidence            34677899988  799999999999999999999999999999999999999999999999 799999999986543221


Q ss_pred             chhhhhhhhHHHHHHHHHcCCCcEEEEECchhchhhHHHhhhcCEEEEeCCcEEecccccccccCCCchHHHHHhhcCHH
Q 026342          145 DYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVSTV  224 (240)
Q Consensus       145 ~~~~~~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~a~f~~pe~~~Gl~p~~g~~~~l~rlvG~~  224 (240)
                      ...  .. .+ . +..+.. |||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..
T Consensus        88 ~~~--~~-~~-~-~~~~~~-~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~  161 (265)
T 3qxi_A           88 VVE--GR-GL-G-FTERPP-AKPLIAAVEGYALAGGTELALATDLIVAARDSAFGIPEVKRGLVAGGGGLLRLPERIPYA  161 (265)
T ss_dssp             EET--TT-EE-T-TTTSCC-SSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECGGGGGTCCCCSSHHHHHHHHSCHH
T ss_pred             hhh--hh-hh-h-HHHhhC-CCCEEEEECCceeHHHHHHHHhCCEEEEcCCCEEECcccccCcCCcccHHHHHHHHhCHH
Confidence            111  01 11 0 223344 999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCcccc
Q 026342          225 QQCLWWGLKKHVKC  238 (240)
Q Consensus       225 ~a~ellltG~~i~A  238 (240)
                      +|++|+++|+.|+|
T Consensus       162 ~a~~l~ltg~~~~a  175 (265)
T 3qxi_A          162 IAMELALTGDNLSA  175 (265)
T ss_dssp             HHHHHHHHCCCEEH
T ss_pred             HHHHHHHcCCCcCH
Confidence            99999999999986

>2q35_A CURF; crotonase, lyase; 1.65A {Lyngbya majuscula} PDB: 2q34_A 2q2x_A

Probab=100.00  E-value=3.1e-42  Score=295.03  Aligned_cols=158  Identities=26%  Similarity=0.388  Sum_probs=141.4

Q ss_pred             EEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccchhhhhh
Q 026342           72 IYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGR  151 (240)
Q Consensus        72 ~~~~~~~~~v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~~~~~~  151 (240)
                      .+++  +++|++|+||||+++|+||.+|+.+|.+++++++.|+++|+|||||.| ++||+|+|++++........    .
T Consensus         6 ~~~~--~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~~~~----~   78 (243)
T 2q35_A            6 LTEL--GNGVVQITMKDESSRNGFSPSIVEGLRHCFSVVAQNQQYKVVILTGYG-NYFSSGASKEFLIRKTRGEV----E   78 (243)
T ss_dssp             EEEE--ETTEEEEEECCGGGTSBSCHHHHHHHHHHHHHHHHCTTCCEEEEECBT-TEEECBSCHHHHHHHHTTCC----C
T ss_pred             EEEe--eCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCC-CCeeCCCChHHHhhccchhh----H
Confidence            4555  689999999999999999999999999999999999999999999999 89999999987532110000    0


Q ss_pred             hhHHHHHHHHHcCCCcEEEEECchhchhhHHHhhhcCEEEEeCCcEEecccccccccCCCchHHHHHhhcCHHHHHHHHh
Q 026342          152 LNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVSTVQQCLWWG  231 (240)
Q Consensus       152 ~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~a~f~~pe~~~Gl~p~~g~~~~l~rlvG~~~a~elll  231 (240)
                        ..+++.++.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..+|++|++
T Consensus        79 --~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~l  156 (243)
T 2q35_A           79 --VLDLSGLILDCEIPIIAAMQGHSFGGGLLLGLYADFVVFSQESVYATNFMKYGFTPVGATSLILREKLGSELAQEMIY  156 (243)
T ss_dssp             --CCCCHHHHHTCCSCEEEEECSEEETHHHHHHHTSSEEEEESSSEEECCHHHHTSCCCSSHHHHHHHHHCHHHHHHHHH
T ss_pred             --HHHHHHHHHhCCCCEEEEEcCccccchHHHHHhCCEEEEeCCCEEECCccccCCCCcchHHHHHHHHhCHHHHHHHHH
Confidence              123567899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCcccc
Q 026342          232 LKKHVKC  238 (240)
Q Consensus       232 tG~~i~A  238 (240)
                      +|+.|+|
T Consensus       157 tg~~~~a  163 (243)
T 2q35_A          157 TGENYRG  163 (243)
T ss_dssp             HCCCEEH
T ss_pred             cCCCCCH
Confidence            9999986

>1uiy_A Enoyl-COA hydratase; lyase, beta-oxidation, crotonase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.85A {Thermus thermophilus} SCOP: c.14.1.3

Probab=100.00  E-value=8.6e-42  Score=293.80  Aligned_cols=159  Identities=31%  Similarity=0.464  Sum_probs=140.6

Q ss_pred             CCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCc-cchhhhhhhh-HH
Q 026342           78 GEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGY-ADYENFGRLN-VL  155 (240)
Q Consensus        78 ~~~v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~-~~~~~~~~~~-~~  155 (240)
                      +++|++|+||||+++|+||.+|+.+|.++++.++.|+++|+|||+|.| ++||+|+|++++..... .......... +.
T Consensus         6 ~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~   84 (253)
T 1uiy_A            6 KGHVAVVFLNDPERRNPLSPEMALSLLQALDDLEADPGVRAVVLTGRG-KAFSAGADLAFLERVTELGAEENYRHSLSLM   84 (253)
T ss_dssp             CSSEEEEEECCGGGTCCCCHHHHHHHHHHHHHHHHCTTCCEEEEEESS-SCSBCCCCHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred             eCCEEEEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCC-CCcccCcChHHHHhcccCCchhHHHHHHHHH
Confidence            489999999999999999999999999999999999999999999999 89999999987643200 0111111111 45


Q ss_pred             HHHHHHHcCCCcEEEEECchhchhhHHHhhhcCEEEEeCCcEEecccccccccCCCchHHHHHhhcCHHHHHHHHhcCCc
Q 026342          156 DLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVSTVQQCLWWGLKKH  235 (240)
Q Consensus       156 ~l~~~i~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~a~f~~pe~~~Gl~p~~g~~~~l~rlvG~~~a~ellltG~~  235 (240)
                      +++.++.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++| +++|+|++|..+|++|+++|+.
T Consensus        85 ~~~~~i~~~~kPvIAav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g-~~~l~r~vG~~~a~~l~ltg~~  163 (253)
T 1uiy_A           85 RLFHRVYTYPKPTVAAVNGPAVAGGAGLALACDLVVMDEEARLGYTEVKIGFVAALV-SVILVRAVGEKAAKDLLLTGRL  163 (253)
T ss_dssp             HHHHHHHHCSSCEEEEECSCEETHHHHHHHTSSEEEEETTCEEECCHHHHTCCCHHH-HHHHHHHSCHHHHHHHHHHCCE
T ss_pred             HHHHHHHhCCCCEEEEECCeeeHHHHHHHHhCCEEEEcCCcEEeCcccccCcCCchH-HHHHHHHhCHHHHHHHHHhCCc
Confidence            678899999999999999999999999999999999999999999999999999888 9999999999999999999999


Q ss_pred             ccc
Q 026342          236 VKC  238 (240)
Q Consensus       236 i~A  238 (240)
                      |+|
T Consensus       164 ~~a  166 (253)
T 1uiy_A          164 VEA  166 (253)
T ss_dssp             EEH
T ss_pred             cCH
Confidence            986

>3ju1_A Enoyl-COA hydratase/isomerase family protein; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; HET: MSE; 2.30A {Shewanella oneidensis}

Probab=100.00  E-value=5.2e-42  Score=313.10  Aligned_cols=168  Identities=20%  Similarity=0.287  Sum_probs=148.9

Q ss_pred             cceeEEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCc---
Q 026342           67 EFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGY---  143 (240)
Q Consensus        67 ~~~~v~~~~~~~~~v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~---  143 (240)
                      .++.|.+++  +++|++||||||+++|+||.+|+.+|.++|+.++.|+++|+|||+|.|+++||+|+|++++.....   
T Consensus        40 ~~~~v~~~~--~~~V~~ItLnrP~~~NAl~~~m~~~L~~al~~~~~d~~vr~vVltG~G~~~FcaG~Dl~~~~~~~~~~~  117 (407)
T 3ju1_A           40 VFQTLATAS--GKLVGVVTLNVEKALNALDLDMVRAMTVQLNLWKKDPLIACVVLDGSGEKAFCAGGDVRALYHASVAAK  117 (407)
T ss_dssp             EEEEEECTT--SCEEEEEEECCGGGTSCBCHHHHHHHHHHHHHHHHCTTEEEEEEEESSSSEEECCBCCHHHHHHHHHHT
T ss_pred             ccceEEEEE--ECCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHhCCCcEEEEEecCCCCcccCCCChhhhhhcccccc
Confidence            467788876  799999999999999999999999999999999999999999999999779999999987643210   


Q ss_pred             ----cchhhhhhhhHHHHHHHHHcCCCcEEEEECchhchhhHHHhhhcCEEEEeCCcEEecccccccccCCCchHHHHHh
Q 026342          144 ----ADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSR  219 (240)
Q Consensus       144 ----~~~~~~~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~a~f~~pe~~~Gl~p~~g~~~~l~r  219 (240)
                          .....+.. ..++++.+|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|
T Consensus       118 ~~~~~~~~~~~~-~~~~l~~~i~~~~kPvIAaVnG~a~GgG~~LalacD~ria~~~a~f~~pe~~lGl~P~~G~t~~L~r  196 (407)
T 3ju1_A          118 GQVTEVAKVFFE-EEYRLDYLLHTYGKPVLVWGDGIVMGGGLGLMAGASHKVVTETSRIAMPEVTIGLYPDVGGSYFLNR  196 (407)
T ss_dssp             SSCCHHHHHHHH-HHHHHHHHHHTCSSCEEEECCSEEETHHHHHHHHCSEEEECTTCEEECGGGGGTCCSCTTHHHHTTT
T ss_pred             cccHHHHHHHHH-HHHHHHHHHHHCCCCEEEEECCccccCcchHHhcCCEEEEcCCCEEeChHhhcCCCCCchHHHHHhh
Confidence                00111111 2456788999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCHHHHHHHHhcCCcccc
Q 026342          220 LVSTVQQCLWWGLKKHVKC  238 (240)
Q Consensus       220 lvG~~~a~ellltG~~i~A  238 (240)
                      ++| .+|++|++||++|+|
T Consensus       197 l~g-~~A~~l~ltG~~i~A  214 (407)
T 3ju1_A          197 MPG-KMGLFLGLTAYHMNA  214 (407)
T ss_dssp             SST-THHHHHHHHCCCBCH
T ss_pred             hhH-HHHHHHHHcCCcCcH
Confidence            999 999999999999987

>3trr_A Probable enoyl-COA hydratase/isomerase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.09A {Mycobacterium abscessus}

Probab=100.00  E-value=6.2e-42  Score=295.29  Aligned_cols=160  Identities=27%  Similarity=0.376  Sum_probs=142.2

Q ss_pred             eeEEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccchhh
Q 026342           69 TDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYEN  148 (240)
Q Consensus        69 ~~v~~~~~~~~~v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~~~  148 (240)
                      +.|.+++  +++|++|+||||+++|+||.+|+.+|.+++++++.|+++|+|||+|.| ++||+|+|++++..........
T Consensus         7 ~~v~~~~--~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~~~~~~   83 (256)
T 3trr_A            7 DEVLIEQ--RDRVLLITINRPDARNAVNRAVSQGLAAAADQLDSSADLSVAIITGAG-GNFCAGMDLKAFVSGEAVLSER   83 (256)
T ss_dssp             CSEEEEE--ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEEGG-GCCCCCBCHHHHHHTCCCEETT
T ss_pred             CceEEEE--ECCEEEEEEcCCCcCCCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCC-CceecCcCHHHhccccchhhhh
Confidence            4588888  799999999999999999999999999999999999999999999999 8999999998765422111110


Q ss_pred             hhhhhHHHHHHHHHcCCCcEEEEECchhchhhHHHhhhcCEEEEeCCcEEecccccccccCCCchHHHHHhhcCHHHHHH
Q 026342          149 FGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVSTVQQCL  228 (240)
Q Consensus       149 ~~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~a~f~~pe~~~Gl~p~~g~~~~l~rlvG~~~a~e  228 (240)
                        .  + . +..+ ++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|..+|++
T Consensus        84 --~--~-~-~~~~-~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~  156 (256)
T 3trr_A           84 --G--L-G-FTNV-PPRKPIIAAVEGFALAGGTELVLSCDLVVAGRSAKFGIPEVKRGLVAGAGGLLRLPNRIPYQVAME  156 (256)
T ss_dssp             --E--E-T-TSSS-CCSSCEEEEECSBCCTHHHHHHHTSSEEEEETTCEECCCGGGGTCCCCSSHHHHHHHHSCHHHHHH
T ss_pred             --h--h-h-HHHh-cCCCCEEEEECCeeeechhHHHHhCCEEEECCCCEEEehhhccCCCCCccHHHHHHHHhCHHHHHH
Confidence              1  0 1 1234 899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhcCCcccc
Q 026342          229 WWGLKKHVKC  238 (240)
Q Consensus       229 llltG~~i~A  238 (240)
                      |+++|+.|+|
T Consensus       157 l~ltg~~~~a  166 (256)
T 3trr_A          157 LALTGESFTA  166 (256)
T ss_dssp             HHHHCCCEEH
T ss_pred             HHHhCCCcCH
Confidence            9999999986

>3m6n_A RPFF protein; enoyl-COA hydratase, lyase; 1.80A {Xanthomonas campestris PV} PDB: 3m6m_A

Probab=100.00  E-value=3e-41  Score=297.83  Aligned_cols=171  Identities=16%  Similarity=0.151  Sum_probs=141.3

Q ss_pred             CcceeEEEEEEeCCCEEEEEEcCCCC----CCCCCHHHHHHHHHHHHHhhh-----CCCeeEEEEeeCCCCCcccCCCcc
Q 026342           66 TEFTDIIYEKAVGEGIAKITINRPDR----RNAFRPHTVKELIRAFNDARD-----DSSVGVIILTGKGTEAFCSGGDQA  136 (240)
Q Consensus        66 ~~~~~v~~~~~~~~~v~~Itlnrp~~----~Nal~~~~~~~L~~~l~~~~~-----d~~v~vvVltg~g~~~FcaG~Dl~  136 (240)
                      ..|+.+.+..+.+++|++|+||||+|    +|+||.+|+.+|.++|+.++.     |+++|+|||+|.| ++||+|+|++
T Consensus        27 ~~y~~i~v~~~~~~~V~~itLnrp~k~n~~rpal~~~m~~eL~~al~~~~~d~~~~d~~vr~vVltg~G-~~FcaG~Dl~  105 (305)
T 3m6n_A           27 NIGSTLRIIEEPQRDVYWIHMHADLAINPGRACFSTRLVDDITGYQTNLGQRLNTAGVLAPHVVLASDS-DVFNLGGDLA  105 (305)
T ss_dssp             --CTTEEEEEETTTTEEEEEECTTC-----CCSBCHHHHHHHHHHHHHHHHHHHHHTCSSCEEEEEESS-SSSBCCBCHH
T ss_pred             cCCceEEEEEEEECCEEEEEECCccccCCCCCCCCHHHHHHHHHHHHHHHhcccccCCCeEEEEEECCC-CCeecCcCHH
Confidence            34666666554589999999999998    559999999999999999987     5899999999998 8999999998


Q ss_pred             ccccCCcc-chh---hhhhhhHHHHHHHH---HcCCCcEEEEECchhchhhHHHhhhcCEEEEeCCcEEecccccccccC
Q 026342          137 LRTRDGYA-DYE---NFGRLNVLDLQVQI---RRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFD  209 (240)
Q Consensus       137 ~~~~~~~~-~~~---~~~~~~~~~l~~~i---~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~a~f~~pe~~~Gl~p  209 (240)
                      ++...... ...   .+.. .+.+.+..+   .++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|
T Consensus       106 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p  184 (305)
T 3m6n_A          106 LFCQLIREGDRARLLDYAQ-RCVRGVHAFHVGLGARAHSIALVQGNALGGGFEAALSCHTIIAEEGVMMGLPEVLFDLFP  184 (305)
T ss_dssp             HHHHHHHHTCHHHHHHHHH-HHHHHHHHHHTGGGTTCEEEEEECSCEETHHHHHHHHSSEEEEETTCEEECGGGGGTCCC
T ss_pred             HHHhccccccHHHHHHHHH-HHHHHHHHHHHhcCCCCCEEEEECCEeehHHHHHHHhCCEEEEcCCCEEECchhccCcCC
Confidence            76432110 111   1111 122333333   468999999999999999999999999999999999999999999999


Q ss_pred             CCchHHHHHhhcCHHHHHHHHhcCCcccc
Q 026342          210 AGYGSSIMSRLVSTVQQCLWWGLKKHVKC  238 (240)
Q Consensus       210 ~~g~~~~l~rlvG~~~a~ellltG~~i~A  238 (240)
                      ++|++++|+|++|..+|++|++||+.|+|
T Consensus       185 ~~g~~~~L~r~vG~~~A~~llltG~~i~A  213 (305)
T 3m6n_A          185 GMGAYSFMCQRISAHLAQKIMLEGNLYSA  213 (305)
T ss_dssp             CSSHHHHHTTTSCHHHHHHHHHHCCEEEH
T ss_pred             CccHHHHHHHHhcHHHHHHHHHcCCCCCH
Confidence            99999999999999999999999999986

>3ot6_A Enoyl-COA hydratase/isomerase family protein; structural genomics, PSI-2, protein structure initiative; 2.50A {Pseudomonas syringae PV}

Probab=100.00  E-value=4.2e-41  Score=286.19  Aligned_cols=162  Identities=20%  Similarity=0.226  Sum_probs=142.5

Q ss_pred             eeEEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccchhh
Q 026342           69 TDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYEN  148 (240)
Q Consensus        69 ~~v~~~~~~~~~v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~~~  148 (240)
                      +.|.+++  +++|++|+||||+ .|+||.+|+.+|.+++++++.|+  |+|||||.| ++||+|+|++++... ......
T Consensus         6 ~~v~~~~--~~~v~~itlnrp~-~Nal~~~~~~~L~~al~~~~~d~--~~vvltg~g-~~F~aG~Dl~~~~~~-~~~~~~   78 (232)
T 3ot6_A            6 DLVSYHL--DDGVATLTLNNGK-VNAISPDVIIAFNAALDQAEKDR--AIVIVTGQP-GILSGGYDLKVMTSS-AEAAIN   78 (232)
T ss_dssp             HHEEEEE--ETTEEEEEECCTT-TTCBCHHHHHHHHHHHHHHHHTT--CEEEEECBT-EEEECCBCHHHHHHC-HHHHHH
T ss_pred             cceEEEE--ECCEEEEEECCCC-CCCCCHHHHHHHHHHHHHHhcCC--CEEEEECCC-CCccCCcCHHHHhhC-hHHHHH
Confidence            3588887  7999999999985 79999999999999999999874  899999999 899999999987542 111111


Q ss_pred             hhhhhHHHHHHHHHcCCCcEEEEECchhchhhHHHhhhcCEEEEeCC-cEEecccccccccCCCchHHHHHhhcCHHHHH
Q 026342          149 FGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADN-AIFGQTGPKVGSFDAGYGSSIMSRLVSTVQQC  227 (240)
Q Consensus       149 ~~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~-a~f~~pe~~~Gl~p~~g~~~~l~rlvG~~~a~  227 (240)
                      +.. ...+++.++.++|||+||+|||+|+|||++|+++||+|||+++ ++|++||+++|++|++++++++++++|..+|+
T Consensus        79 ~~~-~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~~a~f~~pe~~~Gl~p~~~g~~~l~~~ig~~~a~  157 (232)
T 3ot6_A           79 LVA-QGSTLARRMLSHPFPIIVACPGHAVAKGAFLLLSADYRIGVAGPFSIGLNEVQIGMTMHHAGIELARDRLRKSAFN  157 (232)
T ss_dssp             HHH-HHHHHHHHHHTCSSCEEEECCEEEETHHHHHHTTSSEEEEECSSCCEECCTTTTTCCCCHHHHHHHHHHSCHHHHH
T ss_pred             HHH-HHHHHHHHHHcCCCCEEEEECCEeehHHHHHHHHCCEEEEeCCCcEEECcccccCCCCchhHHHHHHHHhCHHHHH
Confidence            111 3457788999999999999999999999999999999999998 89999999999998888899999999999999


Q ss_pred             HHHhcCCcccc
Q 026342          228 LWWGLKKHVKC  238 (240)
Q Consensus       228 ellltG~~i~A  238 (240)
                      +|+++|+.|+|
T Consensus       158 ~l~ltg~~i~A  168 (232)
T 3ot6_A          158 RSVINAEMFDP  168 (232)
T ss_dssp             HHHTSCCEECH
T ss_pred             HHHHcCCccCH
Confidence            99999999987

>1mj3_A Enoyl-COA hydratase, mitochondrial; homohexamer, lyase; HET: HXC; 2.10A {Rattus norvegicus} SCOP: c.14.1.3 PDB: 2dub_A* 1dub_A* 1ey3_A* 2hw5_A*

Probab=100.00  E-value=1.4e-41  Score=293.58  Aligned_cols=167  Identities=32%  Similarity=0.484  Sum_probs=143.3

Q ss_pred             ceeEEEEEE-eCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccch
Q 026342           68 FTDIIYEKA-VGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADY  146 (240)
Q Consensus        68 ~~~v~~~~~-~~~~v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~  146 (240)
                      |+.+.++.. ..++|++|+||||+++|+||.+|+.+|.++|+.+++|+++|+|||+|.| ++||+|+|++++.....  .
T Consensus         3 ~~~~~~~~~v~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~--~   79 (260)
T 1mj3_A            3 FQYIITEKKGKNSSVGLIQLNRPKALNALCNGLIEELNQALETFEEDPAVGAIVLTGGE-KAFAAGADIKEMQNRTF--Q   79 (260)
T ss_dssp             CSSEEEEEESGGGCEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEECCS-SEEECCBCHHHHTTCCH--H
T ss_pred             cccceeecccCcCCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHHhCCCeeEEEEECCC-CCccCCcChHhhhcccc--h
Confidence            344666541 1578999999999999999999999999999999999999999999999 89999999987643211  1


Q ss_pred             hhhhhhhHHHHHHHHHcCCCcEEEEECchhchhhHHHhhhcCEEEEeCCcEEecccccccccCCCchHHHHHhhcCHHHH
Q 026342          147 ENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVSTVQQ  226 (240)
Q Consensus       147 ~~~~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~a~f~~pe~~~Gl~p~~g~~~~l~rlvG~~~a  226 (240)
                      ..... .+...+.++.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|..+|
T Consensus        80 ~~~~~-~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a  158 (260)
T 1mj3_A           80 DCYSG-KFLSHWDHITRIKKPVIAAVNGYALGGGCELAMMCDIIYAGEKAQFGQPEILLGTIPGAGGTQRLTRAVGKSLA  158 (260)
T ss_dssp             HHHHC---CCGGGGGGGCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECGGGGGTCCCCSSTTTHHHHHHCHHHH
T ss_pred             HHHHH-HHHHHHHHHHhCCCCEEEEECCEEEeHHHHHHHhCCEEEEcCCCEEeCcccccCCCCCccHHHHHHHHhCHHHH
Confidence            11111 11123457889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCcccc
Q 026342          227 CLWWGLKKHVKC  238 (240)
Q Consensus       227 ~ellltG~~i~A  238 (240)
                      ++|+++|+.|+|
T Consensus       159 ~~l~ltg~~~~a  170 (260)
T 1mj3_A          159 MEMVLTGDRISA  170 (260)
T ss_dssp             HHHHHHCCCEEH
T ss_pred             HHHHHcCCcCCH
Confidence            999999999986

>2np9_A DPGC; protein inhibitor complex, oxidoreductase; HET: YE1; 2.45A {Streptomyces toyocaensis} PDB: 2pg8_A*

Probab=100.00  E-value=3.8e-40  Score=301.89  Aligned_cols=168  Identities=24%  Similarity=0.316  Sum_probs=141.8

Q ss_pred             ceeEEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeC--------CCCCcccCCCccccc
Q 026342           68 FTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGK--------GTEAFCSGGDQALRT  139 (240)
Q Consensus        68 ~~~v~~~~~~~~~v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~--------g~~~FcaG~Dl~~~~  139 (240)
                      ++.|.+++  +++|++|+||||+++|+||.+|+.+|.++|++++.|++||+|||||.        |+++||+|+|++++.
T Consensus       166 ~~~v~~e~--~~gVa~ItLNRP~k~NALs~~m~~eL~~al~~~~~D~~VRvVVLtG~~~~~p~~aG~~~FcAG~DL~~~~  243 (440)
T 2np9_A          166 MEAVHLER--RDGVARLTMCRDDRLNAEDGQQVDDMETAVDLALLDPGVRVGLLRGGVMSHPRYRGKRVFSAGINLKYLS  243 (440)
T ss_dssp             CSSEEEEE--ETTEEEEEECCTTTTTCBCHHHHHHHHHHHHHHHHCTTCSEEEEEECBCCSTTTTTCBCCBCCBCHHHHH
T ss_pred             CceEEEEE--ECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEEcCCccccccCCCccccCCcchhhhh
Confidence            45688887  79999999999999999999999999999999999999999999995        547999999998764


Q ss_pred             cCCccchhh---hhhhhHHHHHHHH------------HcCCCcEEEEECchhchhhHHHhhhcCEEEEeCCcEEeccccc
Q 026342          140 RDGYADYEN---FGRLNVLDLQVQI------------RRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPK  204 (240)
Q Consensus       140 ~~~~~~~~~---~~~~~~~~l~~~i------------~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~a~f~~pe~~  204 (240)
                      .........   .....+..++..+            .++||||||+|||+|+|||++|+++||||||+++++|++||++
T Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~pkPvIAAVnG~A~GGG~eLALaCDirIAae~A~Fglpev~  323 (440)
T 2np9_A          244 QGGISLVDFLMRRELGYIHKLVRGVLTNDDRPGWWHSPRIEKPWVAAVDGFAIGGGAQLLLVFDRVLASSDAYFSLPAAK  323 (440)
T ss_dssp             TTCCCTTTTHHHHHHTHHHHHHHCEECCSCSTTTTTCCEECCCEEEEECSEEETHHHHHGGGCSEEEEETTCEEECCCTT
T ss_pred             ccCcchhhhhhHHHHHHHHHHHHHHHhhcccchhhhhhcCCCCEEEEECCcccccchHHHhhCCEEEEcCCCEEECchhc
Confidence            322111110   0000123344433            4799999999999999999999999999999999999999999


Q ss_pred             ccccCCCchHHHHHhhcCHHHHHHHHhcCCcccc
Q 026342          205 VGSFDAGYGSSIMSRLVSTVQQCLWWGLKKHVKC  238 (240)
Q Consensus       205 ~Gl~p~~g~~~~l~rlvG~~~a~ellltG~~i~A  238 (240)
                      +|++|++| +++|+|++|..+|++|++||+.|+|
T Consensus       324 lGl~P~~g-~~~L~rlvG~~~A~ellLtG~~i~A  356 (440)
T 2np9_A          324 EGIIPGAA-NLRLGRFAGPRVSRQVILEGRRIWA  356 (440)
T ss_dssp             TCCCCTTH-HHHHHHHHHHHHHHHHHHHCCCEET
T ss_pred             cCcCcchH-HHHHHHHhhHHHHHHHHHcCCCCCH
Confidence            99999775 7899999999999999999999987

>3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A*

Probab=100.00  E-value=2.5e-39  Score=313.94  Aligned_cols=152  Identities=26%  Similarity=0.382  Sum_probs=141.6

Q ss_pred             CCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccchhhhhhhhHHHH
Q 026342           78 GEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDL  157 (240)
Q Consensus        78 ~~~v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l  157 (240)
                      +|+|++||||||+ .|+||.+|+.+|.++++++++|++||+|||||.| +.||+|+||+++.......       .+.++
T Consensus        28 ~~~Va~itlnrP~-~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g-~~F~aGaDl~~~~~~~~~~-------~~~~~   98 (742)
T 3zwc_A           28 PHSLAMIRLCNPP-VNAVSPTVIREVRNGLQKAGSDHTVKAIVICGAN-GNFCAGADIHGFSAFTPGL-------ALGSL   98 (742)
T ss_dssp             STTEEEEEECCTT-TTCBCHHHHHHHHHHHHHHHTCTTCCEEEEEEST-TCSBCCBCSSSCCSSCSCS-------HHHHH
T ss_pred             eCCEEEEEeCCCc-ccCCCHHHHHHHHHHHHHHhhCCCCeEEEEECCC-CccccCcChHhhhccChhH-------HHHHH
Confidence            7999999999997 7999999999999999999999999999999999 8999999999875433211       24467


Q ss_pred             HHHHHcCCCcEEEEECchhchhhHHHhhhcCEEEEeCCcEEecccccccccCCCchHHHHHhhcCHHHHHHHHhcCCccc
Q 026342          158 QVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVSTVQQCLWWGLKKHVK  237 (240)
Q Consensus       158 ~~~i~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~a~f~~pe~~~Gl~p~~g~~~~l~rlvG~~~a~ellltG~~i~  237 (240)
                      +.+|.+++|||||+|||+|+|||++|+++||||||+++++|++||+++|++|++|++++|+|++|..+|++|++||+.|+
T Consensus        99 ~~~i~~~~kPvIAai~G~a~GGG~elalacD~ria~~~a~fg~pev~lGl~Pg~ggt~rL~rlvG~~~A~~l~ltG~~i~  178 (742)
T 3zwc_A           99 VDEIQRYQKPVLAAIQGVALGGGLELALGCHYRIANAKARVGLPEVTLGILPGARGTQLLPRVVGVPVALDLITSGKYLS  178 (742)
T ss_dssp             HHHHHHCSSCEEEEECSEEETHHHHHHHTSSEEEEETTCEEECGGGGGTCCCTTTHHHHHHHHHCHHHHHHHHHHCCCEE
T ss_pred             HHHHHhCCCCEEEEECccchHHHHHHHHhcCEEEEcCCCEEECcccCcccCCCccHHHHHHHhhhHHHHHHHHHcCCchh
Confidence            88999999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             c
Q 026342          238 C  238 (240)
Q Consensus       238 A  238 (240)
                      |
T Consensus       179 a  179 (742)
T 3zwc_A          179 A  179 (742)
T ss_dssp             H
T ss_pred             H
Confidence            6

>2w3p_A Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ring cleaving, burkholderia xenovorans LB400 crotonase; 1.50A {Burkholderia xenovorans}

Probab=100.00  E-value=1.1e-38  Score=295.83  Aligned_cols=168  Identities=20%  Similarity=0.264  Sum_probs=148.3

Q ss_pred             cceeEEEEEEeCCCEEEEEEcCCC----------CCCCCCHHHHHHHHHHHHHhhhC-CCeeEEEEee-CCCCCcccCCC
Q 026342           67 EFTDIIYEKAVGEGIAKITINRPD----------RRNAFRPHTVKELIRAFNDARDD-SSVGVIILTG-KGTEAFCSGGD  134 (240)
Q Consensus        67 ~~~~v~~~~~~~~~v~~Itlnrp~----------~~Nal~~~~~~~L~~~l~~~~~d-~~v~vvVltg-~g~~~FcaG~D  134 (240)
                      .|+.|.+++  +++|++|+||||+          ++|+||.+|+.+|.++|+.++.| +++|+|||+| .| ++||+|+|
T Consensus        19 ~~~~v~ve~--~ggVA~ITLNRPed~~l~~g~~~k~NALs~~ml~eL~~AL~~~~~D~~~VRaVVLTGa~G-~~FcAGaD   95 (556)
T 2w3p_A           19 QYKHWKLSF--NGPVATLGIDIAEDGGIRDGYKLKLNSYDLGVDIELHDAIQRIRFEHPEVRTVVLTSLKD-RVFCSGAN   95 (556)
T ss_dssp             GCSSEEEEE--ETTEEEEEECCCTTCCSSSSCCCCTTEECHHHHHHHHHHHHHHHHHCTTCCEEEEEESSS-SEEECEEC
T ss_pred             cCceEEEEe--eCCEEEEEEecccccccccccCCCCCCCCHHHHHHHHHHHHHHHhCCCCceEEEEeCCCC-CcccCCcC
Confidence            456788887  6999999999998          89999999999999999999999 9999999999 77 89999999


Q ss_pred             ccccccCCccchhhhhhhhHHHHHHHH----HcCCCcEEEEECchhchhhHHHhhhcCEEEEeCC--cEEeccccc-ccc
Q 026342          135 QALRTRDGYADYENFGRLNVLDLQVQI----RRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADN--AIFGQTGPK-VGS  207 (240)
Q Consensus       135 l~~~~~~~~~~~~~~~~~~~~~l~~~i----~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~--a~f~~pe~~-~Gl  207 (240)
                      ++++..........+.. .+.+++.+|    .++||||||+|||+|+|||++|+++||+|||+++  ++|++||++ +|+
T Consensus        96 L~el~~~~~~~~~~~~~-~~~~l~~~L~~a~~~~pKPVIAAVnG~AlGGGleLALACD~rIAse~~~A~FglPEv~~LGL  174 (556)
T 2w3p_A           96 IFMLGLSTHAWKVNFCK-FTNETRNGLEDSSRHSGLKFLAAVNGACAGGGYELALACDEIYLVDDRSSSVSLPEVPLLGV  174 (556)
T ss_dssp             HHHHHHSCHHHHHHHHH-HHHHHHHHHHHHHHHTSCEEEEEECSEEETHHHHHHHHSSEEEEECSSSCEEECCHHHHHSS
T ss_pred             HHHHhhcccHHHHHHHH-HHHHHHHHHHHHHhcCCCCEEEEECCeechhhHHHHHhCCEEEEcCCCCcEEecccccccCC
Confidence            98765432111111111 245667788    9999999999999999999999999999999999  999999999 999


Q ss_pred             cCCCchHHHHH--hhcCHHHHHHHHhcCCcccc
Q 026342          208 FDAGYGSSIMS--RLVSTVQQCLWWGLKKHVKC  238 (240)
Q Consensus       208 ~p~~g~~~~l~--rlvG~~~a~ellltG~~i~A  238 (240)
                      +|++|++++|+  |++|..+|++|+++|+.|+|
T Consensus       175 ~Pg~Ggt~rLp~~RlVG~~rA~eLlLTGr~isA  207 (556)
T 2w3p_A          175 LPGTGGLTRVTDKRKVRHDRADIFCTVVEGVRG  207 (556)
T ss_dssp             CCTTTHHHHHHHTSCCCHHHHHHHTTCSSCEEH
T ss_pred             CCCccHHHHHHhhccCCHHHHHHHHHcCCCCCH
Confidence            99999999999  99999999999999999986

>1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A*

Probab=100.00  E-value=1.2e-37  Score=302.34  Aligned_cols=167  Identities=23%  Similarity=0.346  Sum_probs=146.1

Q ss_pred             eeEEEEEEeCCCEEEEEEcCCC-CCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCc-c--
Q 026342           69 TDIIYEKAVGEGIAKITINRPD-RRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGY-A--  144 (240)
Q Consensus        69 ~~v~~~~~~~~~v~~Itlnrp~-~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~-~--  144 (240)
                      +.+.+++. +++|++||||||+ +.|+||.+|+.+|.++++++++|+++|+||||| |+++||+|+|++++..... .  
T Consensus         6 ~~i~~~~~-~~~va~itlnrp~~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg-g~~~F~aG~Dl~~~~~~~~~~~~   83 (715)
T 1wdk_A            6 KAITVTAL-ESGIVELKFDLKGESVNKFNRLTLNELRQAVDAIKADASVKGVIVSS-GKDVFIVGADITEFVENFKLPDA   83 (715)
T ss_dssp             SSEEEEEC-GGGEEEEEECCTTSSSCBCCHHHHHHHHHHHHHHHHCTTCCEEEEEE-SSSSSBBCCCHHHHHHHTTSCHH
T ss_pred             CeEEEEEe-eCCEEEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEEC-CCCeEeCCcCHHHHhhcccCCHH
Confidence            34777722 7899999999998 899999999999999999999999999999999 7349999999987643211 1  


Q ss_pred             chhhhhhhhHHHHHHHHHcCCCcEEEEECchhchhhHHHhhhcCEEEEeCCcEEecccccccccCCCchHHHHHhhcCHH
Q 026342          145 DYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVSTV  224 (240)
Q Consensus       145 ~~~~~~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~a~f~~pe~~~Gl~p~~g~~~~l~rlvG~~  224 (240)
                      ....+. ..+.+++.+|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|..
T Consensus        84 ~~~~~~-~~~~~~~~~l~~~~kPvIAav~G~a~GgG~elalacD~ria~~~a~fglpev~lGl~P~~ggt~~L~r~vG~~  162 (715)
T 1wdk_A           84 ELIAGN-LEANKIFSDFEDLNVPTVAAINGIALGGGLEMCLAADFRVMADSAKIGLPEVKLGIYPGFGGTVRLPRLIGVD  162 (715)
T ss_dssp             HHHHHH-HHHHHHHHHHHTCSSCEEEEECSCEETHHHHHHHTSSEEEEETTCEEECGGGGGTCCCCSSHHHHHHHHHCHH
T ss_pred             HHHHHH-HHHHHHHHHHHhCCCCEEEEECCEeeHHHHHHHHHCCEEEEeCCCEEeChhhccCCCCCccHHHHHHHHhCHH
Confidence            111111 1356778899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCcccc
Q 026342          225 QQCLWWGLKKHVKC  238 (240)
Q Consensus       225 ~a~ellltG~~i~A  238 (240)
                      +|++|+++|+.|+|
T Consensus       163 ~A~~l~ltG~~~~a  176 (715)
T 1wdk_A          163 NAVEWIASGKENRA  176 (715)
T ss_dssp             HHHHHHHHCCCEEH
T ss_pred             HHHHHHHcCCCCCH
Confidence            99999999999986

>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana}

Probab=100.00  E-value=1e-37  Score=303.02  Aligned_cols=168  Identities=24%  Similarity=0.284  Sum_probs=139.7

Q ss_pred             cceeEEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccc-
Q 026342           67 EFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYAD-  145 (240)
Q Consensus        67 ~~~~v~~~~~~~~~v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~-  145 (240)
                      ++..+.+++. +++|++|||||| +.|+||.+|+.+|.+++++++.|+++|+||||| |+++||+|+|++++....... 
T Consensus         5 ~~~~i~~~~~-~~~va~itlnrp-~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg-g~~~F~aG~Dl~~~~~~~~~~~   81 (725)
T 2wtb_A            5 TKGKTVMEVG-GDGVAVITLINP-PVNSLSFDVLYNLKSNYEEALSRNDVKAIVITG-AKGRFSGGFDISGFGEMQKGNV   81 (725)
T ss_dssp             --CEEEEEEC-TTSEEEEEEECT-TTTCCCHHHHHHHHHHHHHHTTCTTCCEEEEEE-SSSCCBCSSCC-----------
T ss_pred             cCCeEEEEEe-eCCEEEEEECCC-CCCCCCHHHHHHHHHHHHHHHhCCCceEEEEEC-CCCcccCCcCHHHHhcccchhh
Confidence            4456788732 789999999999 799999999999999999999999999999999 734999999998874321100 


Q ss_pred             --hhhhhhhhHHHHHHHHHcCCCcEEEEECchhchhhHHHhhhcCEEEEeCCcEEecccccccccCCCchHHHHHhhcCH
Q 026342          146 --YENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVST  223 (240)
Q Consensus       146 --~~~~~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~a~f~~pe~~~Gl~p~~g~~~~l~rlvG~  223 (240)
                        ...+.. .+.+++.+|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|.
T Consensus        82 ~~~~~~~~-~~~~~~~~l~~~~kPvIAav~G~a~GgG~elalacD~ria~~~a~fglpev~lGl~P~~Ggt~~L~rlvG~  160 (725)
T 2wtb_A           82 KEPKAGYI-SIDIITDLLEAARKPSVAAIDGLALGGGLELAMACHARISAPAAQLGLPELQLGVIPGFGGTQRLPRLVGL  160 (725)
T ss_dssp             -CCSSSHH-HHHCCCCCCCTSSSCEEEEECSEEETHHHHHHHHSSEEEECTTCEEECCGGGGTCCCCSSHHHHHHHHHCH
T ss_pred             hhHHHHHH-HHHHHHHHHHhCcCcEEEEECCccCcccHHHHHhCCEEEEcCCCEEeCchhccCCCCCccHHHHHHHhcCH
Confidence              011111 23345567889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCcccc
Q 026342          224 VQQCLWWGLKKHVKC  238 (240)
Q Consensus       224 ~~a~ellltG~~i~A  238 (240)
                      .+|++|+++|+.|+|
T Consensus       161 ~~A~~l~ltG~~~~a  175 (725)
T 2wtb_A          161 TKALEMILTSKPVKA  175 (725)
T ss_dssp             HHHHHHHHHCCCEEH
T ss_pred             HHHHHHHHcCCCCCH
Confidence            999999999999986

>3bf0_A Protease 4; bacterial, hydrolase, inner membrane, membrane, transmembrane; 2.55A {Escherichia coli} PDB: 3bez_A

Probab=99.76  E-value=1.7e-19  Score=171.60  Aligned_cols=143  Identities=20%  Similarity=0.206  Sum_probs=120.1

Q ss_pred             CCCEEEEEEcCCCCCCC--CCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccchhhhhhhhHH
Q 026342           78 GEGIAKITINRPDRRNA--FRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVL  155 (240)
Q Consensus        78 ~~~v~~Itlnrp~~~Na--l~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~  155 (240)
                      +++|++|+||+|.+.|+  ++..+.++|.++|+.++.|+++|+|||++.+     .|+|+...        .     .+.
T Consensus       300 ~~~VavI~l~g~i~~n~~~~~~~~~~~l~~~L~~a~~d~~vkaVVL~i~s-----pGG~~~~~--------~-----~i~  361 (593)
T 3bf0_A          300 GDSIGVVFANGAIMDGEETQGNVGGDTTAAQIRDARLDPKVKAIVLRVNS-----PGGSVTAS--------E-----VIR  361 (593)
T ss_dssp             SCEEEEEEEEEEEESSSSCTTSEEHHHHHHHHHHHHHCTTEEEEEEEEEE-----EEECHHHH--------H-----HHH
T ss_pred             CCCEEEEEEeeeecCCccccchhHHHHHHHHHHHHHhCCCCCEEEEEecC-----CCCCHHHH--------H-----HHH
Confidence            67899999999988888  6889999999999999999999999999975     37776421        0     134


Q ss_pred             HHHHHHHcCCCcEEEEECchhchhhHHHhhhcCEEEEeCCcEEecccc------------cccccCCC------------
Q 026342          156 DLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGP------------KVGSFDAG------------  211 (240)
Q Consensus       156 ~l~~~i~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~a~f~~pe~------------~~Gl~p~~------------  211 (240)
                      +.+.++..++|||||+|+|.|.|||+.|+++||++||++++.|+.+++            ++|+.|..            
T Consensus       362 ~~i~~l~~~~kPVia~v~g~AasgG~~iA~aaD~iva~p~a~~Gsigv~~~~~~~~~~~~klGi~~~~~~~g~~k~~~~~  441 (593)
T 3bf0_A          362 AELAAARAAGKPVVVSMGGMAASGGYWISTPANYIVANPSTLTGSIGIFGVITTVENSLDSIGVHTDGVSTSPLADVSIT  441 (593)
T ss_dssp             HHHHHHHHTTCCEEEEEEEEEETHHHHTTTTCSEEEECTTCEEECCCEEEEEEECHHHHHHTTCEEECCBSCGGGCCCTT
T ss_pred             HHHHHHHhCCCCEEEEECCChHHHHHHHHHhCCEEEECCCCEeecceeEEecCchHHHHHhcCceeeeeecccccccCcC
Confidence            456778889999999999999999999999999999999999999875            58876532            


Q ss_pred             -chH---------------HHHHhhcCHHH-----HHHHHhcCCcccc
Q 026342          212 -YGS---------------SIMSRLVSTVQ-----QCLWWGLKKHVKC  238 (240)
Q Consensus       212 -g~~---------------~~l~rlvG~~~-----a~ellltG~~i~A  238 (240)
                       +.+               ..+.+.++..+     +.+++++|+.++|
T Consensus       442 ~~~t~~~~~~l~~~l~~~~~~f~~~V~~~Rg~~~~a~~~l~~G~~~ta  489 (593)
T 3bf0_A          442 RALPPEAQLMMQLSIENGYKRFITLVADARHSTPEQIDKIAQGHVWTG  489 (593)
T ss_dssp             SCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHTTCTTCEEEH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhcCCCcCH
Confidence             122               46788889888     9999999998875

>3rst_A Signal peptide peptidase SPPA; alpha/beta protein fold, signal peptide digestion, bacterial membrane, hydrolase; 2.37A {Bacillus subtilis}

Probab=99.67  E-value=4.3e-16  Score=132.59  Aligned_cols=106  Identities=19%  Similarity=0.316  Sum_probs=83.3

Q ss_pred             CCCEEEEEEcCCCCCCC-----CC--HHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccchhhhh
Q 026342           78 GEGIAKITINRPDRRNA-----FR--PHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFG  150 (240)
Q Consensus        78 ~~~v~~Itlnrp~~~Na-----l~--~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~~~~~  150 (240)
                      +++|++|.++.+=..+.     ++  .-.+.+|.++|+++++|+++|+|||++.     |.|+|+....           
T Consensus         2 ~~~iavi~i~G~I~~~~~~~~~~~~~~~~~~~l~~~l~~a~~d~~v~~ivL~~~-----s~Gg~~~~~~-----------   65 (240)
T 3rst_A            2 SSKIAVLEVSGTIQDNGDSSSLLGADGYNHRTFLKNLERAKDDKTVKGIVLKVN-----SPGGGVYESA-----------   65 (240)
T ss_dssp             CCEEEEEEEESCBCCC---------CCCCHHHHHHHHHHHHHCTTEEEEEEEEE-----ECCBCHHHHH-----------
T ss_pred             CCeEEEEEEEEEEcCCCCcCcccccCCcCHHHHHHHHHHHHhCCCcEEEEEEec-----CCCCCHHHHH-----------
Confidence            46788899986632221     10  0135889999999999999999999986     4688765310           


Q ss_pred             hhhHHHHHHHHHc-CCCcEEEEECchhchhhHHHhhhcCEEEEeCCcEEecc
Q 026342          151 RLNVLDLQVQIRR-LPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQT  201 (240)
Q Consensus       151 ~~~~~~l~~~i~~-~~kP~IAav~G~a~GgG~~lal~~D~rias~~a~f~~p  201 (240)
                        .+.+.+.++.. ++|||||+|+|.|.|||+.|+++||++||++++.|+.+
T Consensus        66 --~i~~~l~~~~~~~~kPVia~v~g~a~~gG~~lA~a~D~i~a~~~a~~g~~  115 (240)
T 3rst_A           66 --EIHKKLEEIKKETKKPIYVSMGSMAASGGYYISTAADKIFATPETLTGSL  115 (240)
T ss_dssp             --HHHHHHHHHHHHHCCCEEEEEEEEEETHHHHHHTTSSEEEECTTCEEECC
T ss_pred             --HHHHHHHHHHHhCCCeEEEEECCeehHhHHHHHHhCCeeEECCCCeEecc
Confidence              23345566777 89999999999999999999999999999999999999

>3viv_A 441AA long hypothetical NFED protein; protein-peptide complex, alpha / beta motif, protease, membr protein stomatin, hydrolase-protein binding complex; 2.25A {Pyrococcus horikoshii} PDB: 3bpp_A 2deo_A

Probab=99.66  E-value=9.6e-16  Score=129.47  Aligned_cols=133  Identities=16%  Similarity=0.171  Sum_probs=109.5

Q ss_pred             CCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccchhhhhhhhHHHH
Q 026342           78 GEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDL  157 (240)
Q Consensus        78 ~~~v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l  157 (240)
                      .+.|++|+++     ++++..+.+.|.++|+.++++ ++++|||+..     |.|+|+..                ...+
T Consensus         7 ~~~V~vI~i~-----g~I~~~~~~~l~~~l~~a~~~-~~~~Ivl~in-----spGG~v~~----------------~~~i   59 (230)
T 3viv_A            7 KNIVYVAQIK-----GQITSYTYDQFDRYITIAEQD-NAEAIIIELD-----TPGGRADA----------------MMNI   59 (230)
T ss_dssp             CCEEEEEEEE-----SCBCHHHHHHHHHHHHHHHHT-TCSEEEEEEE-----BSCEEHHH----------------HHHH
T ss_pred             CCeEEEEEEe-----CEECHHHHHHHHHHHHHHhcC-CCCEEEEEEe-----CCCcCHHH----------------HHHH
Confidence            4678999998     479999999999999999865 5899999875     56766531                2346


Q ss_pred             HHHHHcCCCcEEEEE---CchhchhhHHHhhhcCEEEEeCCcEEecccccccccCCCchH---------------HHHHh
Q 026342          158 QVQIRRLPKPVIAMV---AGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGS---------------SIMSR  219 (240)
Q Consensus       158 ~~~i~~~~kP~IAav---~G~a~GgG~~lal~~D~rias~~a~f~~pe~~~Gl~p~~g~~---------------~~l~r  219 (240)
                      +..|..++||||++|   +|.|.|+|+.|+++||+++|+++++|+.+++..+. |..|..               ..+++
T Consensus        60 ~~~i~~~~~PVia~v~p~~G~AasaG~~ia~a~d~~~a~p~a~ig~~~p~~~~-~~~G~~~~~~~k~~~~~~~~~~~la~  138 (230)
T 3viv_A           60 VQRIQQSKIPVIIYVYPPGASAASAGTYIALGSHLIAMAPGTSIGACRPILGY-SQNGSIIEAPPAITNYFIAYIKSLAQ  138 (230)
T ss_dssp             HHHHHTCSSCEEEEECSTTCEEETHHHHHHHTSSEEEECTTCEEECCCEEEEE-CTTSCEEECCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhCCCCEEEEEecCCCEEhHHHHHHHHhcCceeECCCCEEEeccceecC-CCCCCchHHHHHHHHHHHHHHHHHHH
Confidence            678889999999999   99999999999999999999999999999987532 333321               24778


Q ss_pred             hcCH--HHHHHHHhcCCcccc
Q 026342          220 LVST--VQQCLWWGLKKHVKC  238 (240)
Q Consensus       220 lvG~--~~a~ellltG~~i~A  238 (240)
                      ..|.  .++++++..++.++|
T Consensus       139 ~~Gr~~~~a~~~~~~~~~ltA  159 (230)
T 3viv_A          139 ESGRNATIAEEFITKDLSLTP  159 (230)
T ss_dssp             HTTCCHHHHHHHHHTCCEECH
T ss_pred             HhCcCHHHHHHHHhcCCeecH
Confidence            8885  899999999998876

>2f9y_B Acetyl-coenzyme A carboxylase carboxyl transferas beta; zinc ribbon, crotonase superfamily, spiral domain, ligase; 3.20A {Escherichia coli} SCOP: c.14.1.4

Probab=99.26  E-value=9.7e-12  Score=109.01  Aligned_cols=105  Identities=17%  Similarity=0.271  Sum_probs=83.3

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccchhhhhhhhHHHHHHH
Q 026342           81 IAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQ  160 (240)
Q Consensus        81 v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~  160 (240)
                      |+.+..|..-..|+|+..+.+++.++++.+.++ .+.+|+|++.|      |+|+.+...       ..  .....++.+
T Consensus       120 V~v~a~d~~~~ggslg~~~~~Ki~r~~e~A~~~-~~PvI~l~~sG------Garlqeg~~-------~l--~~~~~i~~a  183 (304)
T 2f9y_B          120 VVAAAFEFAFMGGSMGSVVGARFVRAVEQALED-NCPLICFSASG------GARMQEALM-------SL--MQMAKTSAA  183 (304)
T ss_dssp             CBEEEECTTSTTTCBCTHHHHHHHHHHHHHHHH-TCCEEEEEEES------SBCGGGTHH-------HH--HHHHHHHHH
T ss_pred             EEEEEEcCccccCCCCHHHHHHHHHHHHHHHhC-CCCEEEEECCC------CcCHHHHHH-------HH--HHHHHHHHH
Confidence            455556655568999999999999999999988 89999999876      788754321       11  122344555


Q ss_pred             HH---cCCCcEEEEECchhchhh-HHHhhhcCEEEEeCCcEEecc
Q 026342          161 IR---RLPKPVIAMVAGYAVGGG-HVLHMVCDLTIAADNAIFGQT  201 (240)
Q Consensus       161 i~---~~~kP~IAav~G~a~GgG-~~lal~~D~rias~~a~f~~p  201 (240)
                      +.   ..++|+|++|+|+|.||| +.++++||++||.++|+|++.
T Consensus       184 l~~~~~~~vP~IavV~G~~~GGg~a~~a~~~D~via~~~A~i~v~  228 (304)
T 2f9y_B          184 LAKMQERGLPYISVLTDPTMGGVSASFAMLGDLNIAEPKALIGFA  228 (304)
T ss_dssp             HHHHHHTTCCEEEEEEEEEEHHHHTTGGGCCSEEEECTTCBEESS
T ss_pred             HHHHhcCCCCEEEEEECCCccHHHHHHHhcCCEEEEeCCcEEEee
Confidence            54   459999999999999999 778999999999999999885

>1y7o_A ATP-dependent CLP protease proteolytic subunit; hydrolase; 2.51A {Streptococcus pneumoniae} SCOP: c.14.1.1

Probab=99.21  E-value=4.2e-11  Score=100.26  Aligned_cols=122  Identities=16%  Similarity=0.086  Sum_probs=92.6

Q ss_pred             CCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccchhhhhhhhHHHHHHHHHcCCCcEEEEECc
Q 026342           95 FRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAG  174 (240)
Q Consensus        95 l~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~IAav~G  174 (240)
                      ++.++.+++.+.|..++.|+.++.|+|.-     .|.|+++..                ...++..|..+++||++.++|
T Consensus        54 I~~~~a~~i~~~L~~l~~~~~~k~I~l~I-----nSPGG~v~a----------------g~~I~~~i~~~~~pV~t~v~G  112 (218)
T 1y7o_A           54 VEDNMANSVIAQLLFLDAQDSTKDIYLYV-----NTPGGSVSA----------------GLAIVDTMNFIKADVQTIVMG  112 (218)
T ss_dssp             BCHHHHHHHHHHHHHHHHHCTTSCEEEEE-----EECCBCHHH----------------HHHHHHHHHHSSSCEEEEEEE
T ss_pred             ECHHHHHHHHHHHHHHHhcCCCCCEEEEE-----ECcCCCHHH----------------HHHHHHHHHhcCCCEEEEEcc
Confidence            88899999999999999877777776653     244544321                224566788899999999999


Q ss_pred             hhchhhHHHhhhcCE--EEEeCCcEEecccccccccCCCch------------------HHHHHhhcCH--HHHHHHHhc
Q 026342          175 YAVGGGHVLHMVCDL--TIAADNAIFGQTGPKVGSFDAGYG------------------SSIMSRLVST--VQQCLWWGL  232 (240)
Q Consensus       175 ~a~GgG~~lal~~D~--rias~~a~f~~pe~~~Gl~p~~g~------------------~~~l~rlvG~--~~a~elllt  232 (240)
                      .|.++|+.|+++||.  |+|.++++|++.++.-| ++..|.                  ...+++..|.  .++++++..
T Consensus       113 ~AaS~G~~Ia~a~d~g~r~a~p~a~igih~p~~g-~~~~G~~~di~~~~~~i~~~~~~~~~~~a~~~G~~~~~i~~~~~~  191 (218)
T 1y7o_A          113 MAASMGTVIASSGAKGKRFMLPNAEYMIHQPMGG-TGGGTQQTDMAIAPEHLLKTRNTLEKILAENSGQSMEKVHADAER  191 (218)
T ss_dssp             EEETHHHHHHTTSCTTCEEECTTCEEECCCCC---------------CHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHS
T ss_pred             EeHHHHHHHHHcCCcCcEEEcCCcEEEEeccccc-ccCcCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhC
Confidence            999999999999999  99999999999998743 332222                  2457777776  588999999


Q ss_pred             CCcccc
Q 026342          233 KKHVKC  238 (240)
Q Consensus       233 G~~i~A  238 (240)
                      |+.++|
T Consensus       192 ~~~~ta  197 (218)
T 1y7o_A          192 DNWMSA  197 (218)
T ss_dssp             CCCBCH
T ss_pred             CCEEcH
Confidence            988875

>2f9i_A Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; zinc ribbon, crotonase superfamily, spiral domain; 1.98A {Staphylococcus aureus}

Probab=99.06  E-value=2.7e-10  Score=100.80  Aligned_cols=132  Identities=14%  Similarity=0.177  Sum_probs=87.9

Q ss_pred             CCCEEEEEEcCCC---------CCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccchhh
Q 026342           78 GEGIAKITINRPD---------RRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYEN  148 (240)
Q Consensus        78 ~~~v~~Itlnrp~---------~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~~~  148 (240)
                      ++.-..|.-|++.         ..++++++......+.++.+++..-.=+.++.+.|  ++. |.+....         .
T Consensus       115 ~G~~V~Via~d~~~~~~~~~~~~~G~~~~~~~~Ka~r~~~~A~~~~~PlI~lvdt~G--a~~-g~~ae~~---------g  182 (327)
T 2f9i_A          115 NGRAVTVIGQQRGKDTKDNIYRNFGMAHPEGYRKALRLMKQAEKFNRPIFTFIDTKG--AYP-GKAAEER---------G  182 (327)
T ss_dssp             TTEEEEEEEECCCSSHHHHHHTGGGCCCHHHHHHHHHHHHHHHHTTCCEEEEEEESC--SCC-CHHHHHT---------T
T ss_pred             CCEEEEEEEEcCCCchhhhhhhhcCCCCHHHHHHHHHHHHHHhhcCCCEEEEEeCCC--CCc-chhhhhh---------h
Confidence            4444555556654         34789999999999999999877544333334433  221 2211110         0


Q ss_pred             hhhhhHHHHHHHHHcCCCcEEEEECchhchhhHHHhhhcCEEEEeCCcEEecccccccccCCCchHHHHHh-hcCHHHHH
Q 026342          149 FGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSR-LVSTVQQC  227 (240)
Q Consensus       149 ~~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~a~f~~pe~~~Gl~p~~g~~~~l~r-lvG~~~a~  227 (240)
                      ... ....++.++.++++|+|++|+|.|.|||+.++++||++||.++++|++      +.|.+ ++..+.+ ..+...|.
T Consensus       183 ~~~-~~a~~l~al~~~~vPvIavV~G~a~GGGa~~~~~~D~via~~~A~~~v------~~peg-~a~il~~~~~~a~~A~  254 (327)
T 2f9i_A          183 QSE-SIATNLIEMASLKVPVIAIVIGEGGSGGALGIGIANKVLMLENSTYSV------ISPEG-AAALLWKDSNLAKIAA  254 (327)
T ss_dssp             HHH-HHHHHHHHHHTCSSCEEEEEEEEEBHHHHHTTCCCSEEEEETTCBCBS------SCHHH-HHHHHSSCGGGHHHHH
T ss_pred             hHH-HHHHHHHHHHhCCCCEEEEEECCcChHHHHHHHCCCEEEEcCCceEee------cCchH-HHHHHHHHhcchHHHH
Confidence            011 234556788999999999999999999999999999999999999985      23444 4444444 34446666


Q ss_pred             HH
Q 026342          228 LW  229 (240)
Q Consensus       228 el  229 (240)
                      ++
T Consensus       255 e~  256 (327)
T 2f9i_A          255 ET  256 (327)
T ss_dssp             HH
T ss_pred             HH
Confidence            54

>2f9y_A Acetyl-COA carboxylase, carboxyltransferase alpha; zinc ribbon, crotonase superfamily, spiral domain, ligase; 3.20A {Escherichia coli} SCOP: c.14.1.4

Probab=99.02  E-value=5.6e-10  Score=99.09  Aligned_cols=120  Identities=16%  Similarity=0.112  Sum_probs=84.9

Q ss_pred             CCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccchhhhhhhhHHHHHHHHHcCCCcEEE
Q 026342           91 RRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIA  170 (240)
Q Consensus        91 ~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~IA  170 (240)
                      ..++++++......++++.+++..-.=+.++.+.|  ++. |.+....         .... ....++.++.++++|+|+
T Consensus       151 ~~G~~~~~~~~Ka~r~~~~A~~~~lPlI~lvDt~G--a~~-g~~aE~~---------g~~~-~~a~~l~al~~~~vPvIa  217 (339)
T 2f9y_A          151 NFGMPAPEGYRKALRLMQMAERFKMPIITFIDTPG--AYP-GVGAEER---------GQSE-AIARNLREMSRLGVPVVC  217 (339)
T ss_dssp             GGGCCCHHHHHHHHHHHHHHHHTTCCEEEEEEESC--SCC-SHHHHHT---------THHH-HHHHHHHHHHTCSSCEEE
T ss_pred             hcCCCCHHHHHHHHHHHHHHhhcCCCEEEEEeCCC--Ccc-chHHHHH---------HHHH-HHHHHHHHHHhCCCCEEE
Confidence            34789999999999999998877543333334433  222 2211110         0011 234556788999999999


Q ss_pred             EECchhchhhHHHhhhcCEEEEeCCcEEecccccccccCCCchHHHHHhhcCHHHHHHH
Q 026342          171 MVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVSTVQQCLW  229 (240)
Q Consensus       171 av~G~a~GgG~~lal~~D~rias~~a~f~~pe~~~Gl~p~~g~~~~l~rlvG~~~a~el  229 (240)
                      +|+|.|.|||+.++++||++||.++++|++      +.|.++++.++.+..+...|.++
T Consensus       218 vV~G~a~GGGa~~~~~~D~via~p~A~~~v------~~Peg~asil~~~~~~~~~Aae~  270 (339)
T 2f9y_A          218 TVIGEGGSGGALAIGVGDKVNMLQYSTYSV------ISPEGCASILWKSADKAPLAAEA  270 (339)
T ss_dssp             EEEEEEEHHHHHTTCCCSEEEECTTCEEES------SCHHHHHHHHSSCSTTHHHHHHH
T ss_pred             EEeCCcCcHHHHHHhccCeeeecCCCEEEe------eccchHHHHHHHhhccHHHHHHH
Confidence            999999999999999999999999999996      34555555556666676777765

>2cby_A ATP-dependent CLP protease proteolytic subunit 1; serine protease, endopept mycobacterium tuberculosis, ATP-dependent protease; 2.6A {Mycobacterium tuberculosis} SCOP: c.14.1.1 PDB: 2c8t_A 2ce3_A

Probab=98.07  E-value=1.3e-05  Score=66.16  Aligned_cols=90  Identities=14%  Similarity=0.062  Sum_probs=68.7

Q ss_pred             CCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccchhhhhhhhHHHHHHHHHcCCCcEEEEECc
Q 026342           95 FRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAG  174 (240)
Q Consensus        95 l~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~IAav~G  174 (240)
                      ++..+.+.+.+.|..++.++.++.|+|.=.     |.|+++.                ....+++.|..+++||++.+.|
T Consensus        36 I~~~~a~~i~~~L~~~~~~~~~k~I~l~In-----SPGG~v~----------------a~~~I~~~i~~~~~pV~~~v~g   94 (208)
T 2cby_A           36 VNDEIANRLCAQILLLAAEDASKDISLYIN-----SPGGSIS----------------AGMAIYDTMVLAPCDIATYAMG   94 (208)
T ss_dssp             BCHHHHHHHHHHHHHHHHHCSSSCEEEEEE-----ECCBCHH----------------HHHHHHHHHHHCSSCEEEEEEE
T ss_pred             ECHHHHHHHHHHHHHHHhCCCCCCEEEEEE-----CCCCCHH----------------HHHHHHHHHHhcCCCEEEEECc
Confidence            678899999999999987766665555321     2233221                1224567788899999999999


Q ss_pred             hhchhhHHHhhhcCE--EEEeCCcEEecccccc
Q 026342          175 YAVGGGHVLHMVCDL--TIAADNAIFGQTGPKV  205 (240)
Q Consensus       175 ~a~GgG~~lal~~D~--rias~~a~f~~pe~~~  205 (240)
                      .|..+|..++++||.  |++.+++.+++..+.-
T Consensus        95 ~AaS~g~~Ia~agd~~~~~a~p~a~igih~p~~  127 (208)
T 2cby_A           95 MAASMGEFLLAAGTKGKRYALPHARILMHQPLG  127 (208)
T ss_dssp             EEETHHHHHHHTSCTTCEEECTTCEEECCCC--
T ss_pred             EeHHHHHHHHhCCCcCCEEEcCCcEEEEecccc
Confidence            999999999999998  9999999998877653

>1yg6_A ATP-dependent CLP protease proteolytic subunit; endopeptidase CLP, caseinolytic protease, protease TI, heat shock protein F21.5, hydrolase; 1.90A {Escherichia coli} SCOP: c.14.1.1 PDB: 1tyf_A 2fzs_A* 3mt6_R 1yg8_A 3hln_A 2zl2_A 2zl0_A 2zl4_A 2zl3_A 3tt7_A* 3tt6_A 3ktg_A 3kth_A 3kti_A* 3ktj_A* 3ktk_A* 3q7h_A

Probab=97.63  E-value=0.00014  Score=59.17  Aligned_cols=91  Identities=14%  Similarity=0.097  Sum_probs=69.8

Q ss_pred             CCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccchhhhhhhhHHHHHHHHHcCCCcEEEEECc
Q 026342           95 FRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAG  174 (240)
Q Consensus        95 l~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~IAav~G  174 (240)
                      ++..+.+.+.+.|..++.++.++.|+|.=.     |.|+++.                ....+++.|..+++|+++.+.|
T Consensus        35 I~~~~a~~i~~~L~~l~~~~~~~~I~l~In-----SPGG~v~----------------a~~~I~~~i~~~~~pV~~~v~g   93 (193)
T 1yg6_A           35 VEDHMANLIVAQMLFLEAENPEKDIYLYIN-----SPGGVIT----------------AGMSIYDTMQFIKPDVSTICMG   93 (193)
T ss_dssp             BCHHHHHHHHHHHHHHHHHCSSSCEEEEEE-----ECCBCHH----------------HHHHHHHHHHHSSSCEEEEEEE
T ss_pred             EcHHHHHHHHHHHHHHHhcCCCCCEEEEEE-----CcCCCHH----------------HHHHHHHHHHhcCCCEEEEEee
Confidence            778899999999998887666666655432     2233321                1224566788889999999999


Q ss_pred             hhchhhHHHhhhcCE--EEEeCCcEEeccccccc
Q 026342          175 YAVGGGHVLHMVCDL--TIAADNAIFGQTGPKVG  206 (240)
Q Consensus       175 ~a~GgG~~lal~~D~--rias~~a~f~~pe~~~G  206 (240)
                      .|..+|.-++++||.  |++.+++.++...+..|
T Consensus        94 ~AaS~g~~Ia~ag~~~~r~a~p~s~i~ih~p~~~  127 (193)
T 1yg6_A           94 QAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGG  127 (193)
T ss_dssp             EEETHHHHHHHTSCTTCEEECTTCEEEECCCEEE
T ss_pred             eHHHHHHHHHHCCCcCcEEEecCcEEEEEecccc
Confidence            999999999999999  99999999988665543

>3qwd_A ATP-dependent CLP protease proteolytic subunit; caseinolytic protease, serin-protease, hydrolase; 2.10A {Staphylococcus aureus subsp} SCOP: c.14.1.1 PDB: 3v5e_A 3v5i_A 3sta_V 3st9_A

Probab=97.60  E-value=0.00032  Score=57.62  Aligned_cols=90  Identities=18%  Similarity=0.164  Sum_probs=69.3

Q ss_pred             CCCHHHHHHHHHHHHHhhhCCCeeEEEE--eeCCCCCcccCCCccccccCCccchhhhhhhhHHHHHHHHHcCCCcEEEE
Q 026342           94 AFRPHTVKELIRAFNDARDDSSVGVIIL--TGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAM  171 (240)
Q Consensus        94 al~~~~~~~L~~~l~~~~~d~~v~vvVl--tg~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~IAa  171 (240)
                      .++..+.+.+.+.|..++.++..+.|+|  .+.|       +++.                ....+...|..+++||++.
T Consensus        35 ~I~~~~a~~i~~~L~~l~~~~~~~~I~l~InSPG-------G~v~----------------~~~~I~~~i~~~~~~V~t~   91 (203)
T 3qwd_A           35 QIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPG-------GSVT----------------AGFAIYDTIQHIKPDVQTI   91 (203)
T ss_dssp             CBCHHHHHHHHHHHHHHHHHCSSSCEEEEEEECC-------BCHH----------------HHHHHHHHHHHSSSCEEEE
T ss_pred             EECHHHHHHHHHHHHHHHhcCCCCCEEEEEeCCC-------CCHH----------------HHHHHHHHHHHhcCCcEEE
Confidence            3888999999999999987665554444  4433       3321                1224566788889999999


Q ss_pred             ECchhchhhHHHhhhcC--EEEEeCCcEEeccccccc
Q 026342          172 VAGYAVGGGHVLHMVCD--LTIAADNAIFGQTGPKVG  206 (240)
Q Consensus       172 v~G~a~GgG~~lal~~D--~rias~~a~f~~pe~~~G  206 (240)
                      +.|.|.++|.-++++||  .|++.+++.|.+..+.-|
T Consensus        92 ~~G~AaSag~~i~~ag~~g~r~~~p~a~imiHqP~~~  128 (203)
T 3qwd_A           92 CIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGG  128 (203)
T ss_dssp             EEEEEETHHHHHHHTSCTTCEEECTTCEEECCCCSSS
T ss_pred             EeeeehhHHHHHHHcCCcCeEEEcCCceEEEeccccc
Confidence            99999999999999999  699999999988665433

>2f6i_A ATP-dependent CLP protease, putative; structural genomics, structural genomics conso SGC, hydrolase; 2.45A {Plasmodium falciparum} SCOP: c.14.1.1

Probab=97.44  E-value=0.00063  Score=56.36  Aligned_cols=88  Identities=14%  Similarity=0.085  Sum_probs=67.3

Q ss_pred             CCHHHHHHHHHHHHHhhhCCCeeEEEE--eeCCCCCcccCCCccccccCCccchhhhhhhhHHHHHHHHHcCCCcEEEEE
Q 026342           95 FRPHTVKELIRAFNDARDDSSVGVIIL--TGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMV  172 (240)
Q Consensus        95 l~~~~~~~L~~~l~~~~~d~~v~vvVl--tg~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~IAav  172 (240)
                      ++..+...+.+.|..++.++. +.|+|  -+.|       +++.                .-..+++.|..+++|+++.+
T Consensus        48 I~~~~a~~i~~~L~~l~~~~~-k~I~l~INSPG-------Gsv~----------------a~~~I~~~i~~~~~pV~t~v  103 (215)
T 2f6i_A           48 INKKTADELISQLLYLDNINH-NDIKIYINSPG-------GSIN----------------EGLAILDIFNYIKSDIQTIS  103 (215)
T ss_dssp             BCHHHHHHHHHHHHHHHHHCC-SCEEEEEEECC-------BCHH----------------HHHHHHHHHHHSSSCEEEEE
T ss_pred             ECHHHHHHHHHHHHHHHhCCC-CcEEEEEECCC-------CCHH----------------HHHHHHHHHHhcCCCEEEEE
Confidence            678888999999988876554 55554  4433       3321                12245667888899999999


Q ss_pred             CchhchhhHHHhhhcCE--EEEeCCcEEeccccccc
Q 026342          173 AGYAVGGGHVLHMVCDL--TIAADNAIFGQTGPKVG  206 (240)
Q Consensus       173 ~G~a~GgG~~lal~~D~--rias~~a~f~~pe~~~G  206 (240)
                      .|.|..+|.-++++||.  |+|.+++.+++..+..|
T Consensus       104 ~g~AAS~g~~Ia~agd~g~i~a~p~s~i~ih~p~~~  139 (215)
T 2f6i_A          104 FGLVASMASVILASGKKGKRKSLPNCRIMIHQPLGN  139 (215)
T ss_dssp             EEEECHHHHHHHHTSCTTCEEECTTCEEESSCTTCS
T ss_pred             eeEhHhHHHHHHHcCCcccEEEcCCCEEEEeccccc
Confidence            99999999999999999  99999999987665433

>3p2l_A ATP-dependent CLP protease proteolytic subunit; structural genomics, center for structural genomics of infec diseases, csgid; 2.29A {Francisella tularensis subsp} SCOP: c.14.1.1

Probab=97.25  E-value=0.0012  Score=54.14  Aligned_cols=90  Identities=12%  Similarity=0.060  Sum_probs=68.4

Q ss_pred             CCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccchhhhhhhhHHHHHHHHHcCCCcEEEEECc
Q 026342           95 FRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAG  174 (240)
Q Consensus        95 l~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~IAav~G  174 (240)
                      ++..+.+.+.+.|..++.++..+.|+|.=.     |.|+++.                ....+++.|..+++|+++.+.|
T Consensus        39 I~~~~a~~i~~~L~~l~~~~~~~~I~l~IN-----SpGG~v~----------------~~~~I~~~i~~~~~~v~t~~~G   97 (201)
T 3p2l_A           39 VNDHSANLVIAQLLFLESEDPDKDIYFYIN-----SPGGMVT----------------AGMGVYDTMQFIKPDVSTICIG   97 (201)
T ss_dssp             BCHHHHHHHHHHHHHHHHHCSSSCEEEEEE-----ECCBCHH----------------HHHHHHHHHHHSSSCEEEEEEE
T ss_pred             ECHHHHHHHHHHHHHHHhcCCCCCEEEEEE-----CCCCCHH----------------HHHHHHHHHHHhCCCeEEEEcC
Confidence            788899999999998887655555544321     2233321                1224566788889999999999


Q ss_pred             hhchhhHHHhhhcCE--EEEeCCcEEecccccc
Q 026342          175 YAVGGGHVLHMVCDL--TIAADNAIFGQTGPKV  205 (240)
Q Consensus       175 ~a~GgG~~lal~~D~--rias~~a~f~~pe~~~  205 (240)
                      .|..+|.-+++++|.  |++.+++.+.+..+.-
T Consensus        98 ~AaS~g~~i~~ag~~g~r~~~p~a~imiH~p~~  130 (201)
T 3p2l_A           98 LAASMGSLLLAGGAKGKRYSLPSSQIMIHQPLG  130 (201)
T ss_dssp             EEETHHHHHHHTSSTTCEEECTTCEEEECCCEE
T ss_pred             EehhHHHHHHHcCccCCEEEcCCCeEEEecccc
Confidence            999999999999998  9999999998776653

>1pix_A Glutaconyl-COA decarboxylase A subunit; biotin-dependent ION pump, carboxyltransferase, lyase; 2.20A {Acidaminococcus fermentans} SCOP: c.14.1.4 c.14.1.4

Probab=97.19  E-value=0.0016  Score=61.46  Aligned_cols=141  Identities=17%  Similarity=0.149  Sum_probs=90.1

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccchhhhhhhhHHHHHHH
Q 026342           81 IAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQ  160 (240)
Q Consensus        81 v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~  160 (240)
                      |.++-.+..-+.-++.+...+.+.++++.+.+.. +=+|.|.-      |+|+.+.+-...- .+...+.+  ...-..+
T Consensus       107 v~v~a~D~t~~gGs~g~~~~~Ki~r~~e~A~~~~-lPvI~l~d------SgGArlqe~~~~l-~~~~~~g~--i~~~~~~  176 (587)
T 1pix_A          107 CVVVASDNKKLAGAWVPGQAECLLRASDTAKTLH-VPLVYVLN------CSGVKFDEQEKVY-PNRRGGGT--PFFRNAE  176 (587)
T ss_dssp             EEEEEECTTTTTTEECTTHHHHHHHHHHHHHHHT-CCEEEEEC------CCEECGGGHHHHS-SSTTSTTH--HHHHHHH
T ss_pred             EEEEEECCccccCCCCHHHHHHHHHHHHHHHHcC-CCEEEEEe------CCCCCccccchhc-cccccHHH--HHHHHHH
Confidence            3444444444567889999999999999888764 34555553      4466654311100 00000111  1122446


Q ss_pred             HHcCCCcEEEEECchhchhhHHHhhhcCEEEEeCC-cEEecccccccccCCCchHHHHHhhcCHHHHHHHH-hcCCcccc
Q 026342          161 IRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADN-AIFGQTGPKVGSFDAGYGSSIMSRLVSTVQQCLWW-GLKKHVKC  238 (240)
Q Consensus       161 i~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~-a~f~~pe~~~Gl~p~~g~~~~l~rlvG~~~a~ell-ltG~~i~A  238 (240)
                      +....+|+|++|.|+|.|||... ..||++|++++ +.+++..+.+  +-...    -.-.+|..+|.+++ .+|+.+++
T Consensus       177 ls~~giP~Isvv~G~~~GGga~~-a~~d~vim~e~~a~i~~~GP~v--i~~~~----~~~~~d~~~A~el~~~tge~v~~  249 (587)
T 1pix_A          177 LNQLGIPVIVGIYGTNPAGGGYH-SISPTVIIAHEKANMAVGGAGI--MGGMN----PKGHVDLEYANEIADMVDRTGKT  249 (587)
T ss_dssp             HHHTTCCEEEEECSEEETHHHHH-HHSSSEEEEETTCEEESCCCTT--CCSCC----SSSSCCHHHHHHHHHHHHTTCCC
T ss_pred             HhCCCCCEEEEEecCCcHHHHHH-HhcCceEEecCCcEEEecCHHH--Hhhhc----cccccchhHHHHHHHHhCCccCh
Confidence            67888999999999999999999 99999999875 9888744321  11000    00126889999999 88888763

>1tg6_A Putative ATP-dependent CLP protease proteolytic S; mitochondrial CLPP, CLP/HSP 100, ATP-dependent protease, HYD; HET: FME; 2.10A {Homo sapiens} SCOP: c.14.1.1

Probab=97.06  E-value=0.0025  Score=54.69  Aligned_cols=91  Identities=15%  Similarity=0.123  Sum_probs=67.9

Q ss_pred             CCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccchhhhhhhhHHHHHHHHHcCCCcEEEEECc
Q 026342           95 FRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAG  174 (240)
Q Consensus        95 l~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~IAav~G  174 (240)
                      ++..+.+.+.+.|..++.++..+.|+|.=.     |-|+++.                ....+++.|...++||++.+.|
T Consensus        91 I~d~~a~~iiaqL~~l~~ed~~k~I~L~IN-----SPGGsV~----------------ag~aIyd~I~~~k~pV~t~v~G  149 (277)
T 1tg6_A           91 IDDSVASLVIAQLLFLQSESNKKPIHMYIN-----SPGGVVT----------------AGLAIYDTMQYILNPICTWCVG  149 (277)
T ss_dssp             BCHHHHHHHHHHHHHHHHHCSSSCEEEEEE-----ECCBCHH----------------HHHHHHHHHHHSCSCEEEEEEE
T ss_pred             ECHHHHHHHHHHHHHHHhcCCCCCEEEEEE-----CCCCCHH----------------HHHHHHHHHHhcCCCEEEEEcc
Confidence            788899999999988766444566555432     2233321                1224566788889999999999


Q ss_pred             hhchhhHHHhhhcCE--EEEeCCcEEeccccccc
Q 026342          175 YAVGGGHVLHMVCDL--TIAADNAIFGQTGPKVG  206 (240)
Q Consensus       175 ~a~GgG~~lal~~D~--rias~~a~f~~pe~~~G  206 (240)
                      .|..+|.-|+++||.  |+|.+++.++...+..|
T Consensus       150 ~AASaG~~Ia~Agd~gkr~a~P~S~ImihqP~~g  183 (277)
T 1tg6_A          150 QAASMGSLLLAAGTPGMRHSLPNSRIMIHQPSGG  183 (277)
T ss_dssp             EEETHHHHHHHTSCTTCEEECTTCEEEECCCCCC
T ss_pred             EeHHHHHHHHHCCCcCCEEEecCCEEEEeccccc
Confidence            999999999999999  99999999987665433

>1on3_A Methylmalonyl-COA carboxyltransferase 12S subunit; domain duplication, multienzyme complex, transcarboxylase; HET: MCA; 1.90A {Propionibacterium freudenreichii} SCOP: c.14.1.4 c.14.1.4 PDB: 1on9_A*

Probab=96.62  E-value=0.012  Score=54.88  Aligned_cols=109  Identities=16%  Similarity=0.215  Sum_probs=72.9

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccchhhhhhhhHHHHHHH
Q 026342           81 IAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQ  160 (240)
Q Consensus        81 v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~  160 (240)
                      |+.+..+-.=..-++.....+.+.++++.+.+.. +-+|.|.-      |.|+.+.+-.    .....+.+ -+..+ ..
T Consensus        97 v~v~a~D~t~~gGS~g~~~~~Ki~ra~e~A~~~~-lP~I~l~~------SGGARmqeg~----~sl~~~~~-i~~~~-~~  163 (523)
T 1on3_A           97 VHAASQDFTVMGGSAGETQSTKVVETMEQALLTG-TPFLFFYD------SGGARIQEGI----DSLSGYGK-MFFAN-VK  163 (523)
T ss_dssp             EEEEEECTTTGGGCBCHHHHHHHHHHHHHHHHHT-CCEEEEEE------ECSBCGGGTH----HHHHHHHH-HHHHH-HH
T ss_pred             EEEEEEcCCccCCcCcHHHHHHHHHHHHHHHHcC-CCEEEEEc------CCCCChhhHH----HHHHHHHH-HHHHH-HH
Confidence            3444444444578899999999999999887764 45666664      3355554311    01111111 01111 12


Q ss_pred             HHcCCCcEEEEECchhchhhHHHhhhcCEEEEeCCcEEecccc
Q 026342          161 IRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGP  203 (240)
Q Consensus       161 i~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~a~f~~pe~  203 (240)
                      + .-..|.|+++.|+|.||+......||++|+.+++.+++...
T Consensus       164 ~-s~~iP~Isvv~gp~~GG~a~s~~l~D~ii~~~~a~i~~aGP  205 (523)
T 1on3_A          164 L-SGVVPQIAIIAGPCAGGASYSPALTDFIIMTKKAHMFITGP  205 (523)
T ss_dssp             H-TTTSCEEEEEEEEEESGGGHHHHHSSEEEEETTCEEESSCH
T ss_pred             h-cCCCCEEEEEcCCCchHHHHHHhhCCeEEEeCCCEEEecCH
Confidence            2 34599999999999999999999999999999999988554

>3iav_A Propionyl-COA carboxylase complex B subunit; accase, pccase, ACC, PCC, CT, carboxyltransfe polyketide, fatty acid, PKS, FAS; 1.75A {Streptomyces coelicolor} PDB: 1xnw_A 3ib9_A* 3ibb_A 3mfm_C 1xny_A* 1xnv_A* 1xo6_A

Probab=96.61  E-value=0.016  Score=54.13  Aligned_cols=105  Identities=18%  Similarity=0.195  Sum_probs=70.1

Q ss_pred             EEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccchhhhhhhhHHHHHHHH
Q 026342           82 AKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQI  161 (240)
Q Consensus        82 ~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~i  161 (240)
                      ..+..|..-+.-++.....+.+.++++.+.+.. +=+|.|.-.|      |+.+.+    ......     .+..++.++
T Consensus       100 ~v~a~D~tv~gGS~g~~~~~Ki~ra~e~A~~~~-lP~I~l~dSg------GaRmqE----g~~~l~-----~~~~i~~~~  163 (530)
T 3iav_A          100 AVFSQDFTVFGGALGEVYGQKIVKVMDFALKTG-CPVVGINDSG------GARIQE----GVASLG-----AYGEIFRRN  163 (530)
T ss_dssp             EEEEECTTSGGGCBCHHHHHHHHHHHHHHHHHT-CCEEEEECCC------SBCGGG----THHHHH-----HHHHHHHHH
T ss_pred             EEEEECCCcceEeccHHHHHHHHHHHHHHHHcC-CCEEEEEcCC------Ccchhh----hhhhHH-----HHHHHHHHH
Confidence            344444434578899999999999999888764 4466665433      444432    111111     112223333


Q ss_pred             HcC--CCcEEEEECchhchhhHHHhhhcCEEEEeCC-cEEeccc
Q 026342          162 RRL--PKPVIAMVAGYAVGGGHVLHMVCDLTIAADN-AIFGQTG  202 (240)
Q Consensus       162 ~~~--~kP~IAav~G~a~GgG~~lal~~D~rias~~-a~f~~pe  202 (240)
                      .++  -+|+|++|.|+|.|||......||++|++++ +.+++..
T Consensus       164 ~~~s~~iP~Isvv~G~~~GG~a~~~al~D~~im~~~~a~i~~aG  207 (530)
T 3iav_A          164 THASGVIPQISLVVGPCAGGAVYSPAITDFTVMVDQTSHMFITG  207 (530)
T ss_dssp             HHTTTTSCEEEEECSEEEGGGGHHHHHSSEEEEETTTCEEESSC
T ss_pred             HHHcCCCCEEEEEecCcchHHHHHHHhCCEEEEecCCcEEEecC
Confidence            222  3999999999999999999999999999986 8888743

>2bzr_A Propionyl-COA carboxylase beta chain 5; fatty acid biosynthesis, accase, ligase, transferase; 2.2A {Mycobacterium tuberculosis} PDB: 2a7s_A

Probab=96.46  E-value=0.024  Score=53.06  Aligned_cols=106  Identities=14%  Similarity=0.095  Sum_probs=72.5

Q ss_pred             EEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccchhhhhhhhHHHHHHHH
Q 026342           82 AKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQI  161 (240)
Q Consensus        82 ~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~i  161 (240)
                      ..+..+-.=+.-++.....+.+.++++.+.+.. +-+|.|.-      |.|+.+.+-.    .....     +.+++.++
T Consensus       111 ~v~a~D~t~~gGS~g~~~~~Ki~ra~e~A~~~~-lP~I~l~d------SGGARmqeg~----~sl~~-----~~~i~~~~  174 (548)
T 2bzr_A          111 CIFSQDATVFGGSLGEVYGEKIVKVQELAIKTG-RPLIGIND------GAGARIQEGV----VSLGL-----YSRIFRNN  174 (548)
T ss_dssp             EEEEECTTSGGGCCCHHHHHHHHHHHHHHHHHT-CCEEEEEC------CCSCCGGGTT----HHHHH-----HHHHHHHH
T ss_pred             EEEEEcCccccCCCChhHHHHHHHHHHHHHHcC-CCEEEEEc------CCCCCchhHH----HHHHH-----HHHHHHHH
Confidence            344444333577999999999999999887764 45666664      3466654311    11111     12223333


Q ss_pred             H--cCCCcEEEEECchhchhhHHHhhhcCEEEEeCC-cEEecccc
Q 026342          162 R--RLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADN-AIFGQTGP  203 (240)
Q Consensus       162 ~--~~~kP~IAav~G~a~GgG~~lal~~D~rias~~-a~f~~pe~  203 (240)
                      .  .-..|.|+++.|+|.||+......||++|+.++ +.+++...
T Consensus       175 ~~~s~~iP~Isvv~gp~~GG~a~s~al~D~ii~~~~~a~i~~aGP  219 (548)
T 2bzr_A          175 ILASGVIPQISLIMGAAAGGHVYSPALTDFVIMVDQTSQMFITGP  219 (548)
T ss_dssp             HHTTTTSCEEEEECSEEESGGGHHHHHSSEEEEETTTCEEESSCH
T ss_pred             HHhcCCCcEEEEecCCCchHHHHHHHhCCeEEeccCceeEEeccH
Confidence            3  334999999999999999998889999999997 98888543

>1x0u_A Hypothetical methylmalonyl-COA decarboxylase ALPH; lyase; 2.20A {Sulfolobus tokodaii}

Probab=96.36  E-value=0.022  Score=53.03  Aligned_cols=109  Identities=18%  Similarity=0.187  Sum_probs=72.5

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccchhhhhhhhHHHHHHH
Q 026342           81 IAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQ  160 (240)
Q Consensus        81 v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~  160 (240)
                      |+.+..|-.=..-++.....+.+.++++.+.+.. +-+|.|.-      |.|+.+.+-.    .....+.+ -+..+. .
T Consensus        93 v~v~a~D~t~~gGS~g~~~~~Ki~ra~e~A~~~~-~P~I~l~~------SGGaRmqeg~----~sl~~~~~-i~~~~~-~  159 (522)
T 1x0u_A           93 VFAYAQDFTVLGGSLGETHANKIVRAYELALKVG-APVVGIND------SGGARIQEGA----LSLEGYGA-VFKMNV-M  159 (522)
T ss_dssp             EEEEEECTTTGGGCBCHHHHHHHHHHHHHHHHHT-CCEEEEEC------CCSBCGGGTH----HHHHHHHH-HHHHHH-H
T ss_pred             EEEEEecCceeCccccHHHHHHHHHHHHHHHHcC-CCEEEEEc------CCCCChhHHH----HHHHHHHH-HHHHHH-H
Confidence            3444444333577899999999999999887763 45677664      3466654311    01111111 011111 2


Q ss_pred             HHcCCCcEEEEECchhchhhHHHhhhcCEEEEeCC-c-EEecccc
Q 026342          161 IRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADN-A-IFGQTGP  203 (240)
Q Consensus       161 i~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~-a-~f~~pe~  203 (240)
                      + .-..|.|+++.|+|.||+......||++|+.++ + .+++..+
T Consensus       160 ~-s~~iP~Isvv~gp~~GG~a~s~~l~D~~i~~~~~a~~i~~aGP  203 (522)
T 1x0u_A          160 A-SGVIPQITIMAGPAAGGAVYSPALTDFIIMIKGDAYYMFVTGP  203 (522)
T ss_dssp             H-TTTSCEEEEECSEEEGGGGHHHHHSSEEEEECSTTCEEESSCH
T ss_pred             h-CCCCcEEEEEcCCCchHHHHHHhcCCeEEEecCCccEEEecCH
Confidence            2 445999999999999999999999999999998 8 8888543

>2f9i_B Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta; zinc ribbon, crotonase superfamily, spiral domain; 1.98A {Staphylococcus aureus}

Probab=96.34  E-value=0.027  Score=48.43  Aligned_cols=109  Identities=12%  Similarity=0.136  Sum_probs=72.2

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccchhhh-hhhhHHHHHH
Q 026342           81 IAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENF-GRLNVLDLQV  159 (240)
Q Consensus        81 v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~~~~-~~~~~~~l~~  159 (240)
                      |+.+..|..-..-+++....+.+.++++.+.+.. +=+|.|.-.|      |+-..+       ..... .-......+.
T Consensus       123 V~v~a~d~~~~gGs~g~~~~~K~~r~ie~A~~~~-lPlI~l~dsg------Gar~qE-------Gi~sl~q~aki~~~l~  188 (285)
T 2f9i_B          123 FGVAVMDSRFRMGSMGSVIGEKICRIIDYCTENR-LPFILFSASG------GARMQE-------GIISLMQMGKTSVSLK  188 (285)
T ss_dssp             EEEEEECTTTGGGCCCHHHHHHHHHHHHHHHHTT-CCEEEEEEEC------SCCGGG-------HHHHHHHHHHHHHHHH
T ss_pred             EEEEEEccccccCcCCHHHHHHHHHHHHHHHHcC-CCEEEEEeCC------Ccchhh-------hhhhHhHHHHHHHHHH
Confidence            3444443332457899999999999999888775 4566665544      221111       10100 0011223445


Q ss_pred             HHHcCCCcEEEEECchhchhhHHH-hhhcCEEEEeCCcEEecccc
Q 026342          160 QIRRLPKPVIAMVAGYAVGGGHVL-HMVCDLTIAADNAIFGQTGP  203 (240)
Q Consensus       160 ~i~~~~kP~IAav~G~a~GgG~~l-al~~D~rias~~a~f~~pe~  203 (240)
                      ++.....|.|+.+-|+|.||+... ++.+|+++|.++|.+++-.+
T Consensus       189 ~~s~~~vP~Isvv~g~~~GG~~as~a~~~D~i~a~p~A~i~~aGP  233 (285)
T 2f9i_B          189 RHSDAGLLYISYLTHPTTGGVSASFASVGDINLSEPKALIGFAGR  233 (285)
T ss_dssp             HHHHTTCCEEEEEEEEEEHHHHTTGGGCCSEEEECTTCBEESSCH
T ss_pred             HHHcCCCCEEEEEeCCccHHHHHHhhhCCCEEEEeCCcEEEEcCH
Confidence            666788999999999999998654 89999999999999887433

>3n6r_B Propionyl-COA carboxylase, beta subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Roseobacter denitrificans}

Probab=96.22  E-value=0.03  Score=52.18  Aligned_cols=106  Identities=15%  Similarity=0.163  Sum_probs=69.6

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccchhhhhhhhHHHHHHH
Q 026342           81 IAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQ  160 (240)
Q Consensus        81 v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~  160 (240)
                      |..+..+..-+.-++.....+.+.++++.+.+.. +=+|.|.-.|      |+.+.+    .......     +.+++.+
T Consensus       107 v~v~a~D~t~~gGS~g~~~~~Ki~ra~e~A~~~~-lPvI~l~dSG------GARmqe----g~~sl~~-----~~~i~~~  170 (531)
T 3n6r_B          107 VYVFSQDFTVLGGSVSETHSKKICKIMDMAMQNG-APVIGINDSG------GARIQE----GVDSLAG-----YGEVFQR  170 (531)
T ss_dssp             EEEEEECTTSGGGCBCHHHHHHHHHHHHHHHHHT-CCEEEEECCC------CBCGGG----THHHHHH-----HHHHHHH
T ss_pred             EEEEEECCCcccccccHHHHHHHHHHHHHHHHcC-CCEEEEeCCC------ccccCc----ccchhhh-----HHHHHHH
Confidence            3444444444568899999999999999887664 3456665433      555443    1111111     1122222


Q ss_pred             HH--cCCCcEEEEECchhchhhHHHhhhcCEEEEeCC-cEEeccc
Q 026342          161 IR--RLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADN-AIFGQTG  202 (240)
Q Consensus       161 i~--~~~kP~IAav~G~a~GgG~~lal~~D~rias~~-a~f~~pe  202 (240)
                      +.  .-..|+|++|.|+|.|||......||++|+.++ +.+++..
T Consensus       171 ~~~~s~~iP~Isvv~Gp~~GG~a~s~a~~D~vi~~~~~a~i~~aG  215 (531)
T 3n6r_B          171 NIMASGVVPQISMIMGPCAGGAVYSPAMTDFIFMVKDSSYMFVTG  215 (531)
T ss_dssp             HHHTTTTSCEEEEECSCCBGGGGHHHHHSSEEEEETTTCBCBSSC
T ss_pred             HHHHhCCCCEEEEEeCCcchHHHHHhhhCCEEEEecCCceEeecC
Confidence            22  235899999999999999998888999999986 8777643

>3bf0_A Protease 4; bacterial, hydrolase, inner membrane, membrane, transmembrane; 2.55A {Escherichia coli} PDB: 3bez_A

Probab=96.19  E-value=0.0093  Score=56.47  Aligned_cols=87  Identities=18%  Similarity=0.213  Sum_probs=64.2

Q ss_pred             HHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccC-CCccccccCCccchhhhhhhhHHHHHHHHHcCCCcEEEEECchhc
Q 026342           99 TVKELIRAFNDARDDSSVGVIILTGKGTEAFCSG-GDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAV  177 (240)
Q Consensus        99 ~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG-~Dl~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~IAav~G~a~  177 (240)
                      ...++.+.|+.+++|+.++.|+|.-..     .| +++...             ..+.+.+..+....|||||.+++ +.
T Consensus        71 ~~~~i~~~L~~a~~d~~ik~I~L~ins-----pGgG~v~~~-------------~~I~~~i~~~k~~gkpvva~~~~-aa  131 (593)
T 3bf0_A           71 SLFDIVNTIRQAKDDRNITGIVMDLKN-----FAGGDQPSM-------------QYIGKALKEFRDSGKPVYAVGEN-YS  131 (593)
T ss_dssp             EHHHHHHHHHHHHHCTTCCCEEEECTE-----EEECCHHHH-------------HHHHHHHHHHHHTTCCEEEEESC-EE
T ss_pred             CHHHHHHHHHHHHhCCCceEEEEEeCC-----CCCCcHHHH-------------HHHHHHHHHHHhcCCeEEEEEcc-ch
Confidence            467788999999999999999998643     23 343211             12334445555557999999887 55


Q ss_pred             hhhHHHhhhcCEEEEeCCcEEeccccc
Q 026342          178 GGGHVLHMVCDLTIAADNAIFGQTGPK  204 (240)
Q Consensus       178 GgG~~lal~~D~rias~~a~f~~pe~~  204 (240)
                      -+|.-|+++||-+++.+.+.++...+.
T Consensus       132 s~~y~lAsaad~i~~~P~~~vg~~g~~  158 (593)
T 3bf0_A          132 QGQYYLASFANKIWLSPQGVVDLHGFA  158 (593)
T ss_dssp             HHHHHHHTTSSEEEECTTCCEECCCCB
T ss_pred             hHHHHHHHhCCEEEECCCceEEEeccc
Confidence            678999999999999999988876554

>1vrg_A Propionyl-COA carboxylase, beta subunit; TM0716, structural joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE; 2.30A {Thermotoga maritima} SCOP: c.14.1.4 c.14.1.4

Probab=95.74  E-value=0.071  Score=49.70  Aligned_cols=108  Identities=19%  Similarity=0.219  Sum_probs=69.9

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccchhhhhhhhHHHHHHH
Q 026342           81 IAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQ  160 (240)
Q Consensus        81 v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~  160 (240)
                      |.++-.+..=+.-++.....+.+.++++.+.+..- =+|.|.-.|      |+.+.+-.    .....+.+ .+...  .
T Consensus       100 v~v~a~D~t~~gGS~g~~~~~Ki~r~~e~A~~~~l-PvI~l~dSg------GAR~qeg~----~~l~g~~~-~~~~~--~  165 (527)
T 1vrg_A          100 VAVFSQDFTVMGGSLGEMHAKKIVKLLDLALKMGI-PVIGINDSG------GARIQEGV----DALAGYGE-IFLRN--T  165 (527)
T ss_dssp             EEEEEECTTTGGGCBCHHHHHHHHHHHHHHHHHTC-CEEEEEEEC------SBCGGGTH----HHHHHHHH-HHHHH--H
T ss_pred             EEEEEEeccccCccccHHHHHHHHHHHHHHHHcCC-CEEEEECCC------CCCccchh----HHHHHHHH-HHHHH--H
Confidence            34444443335778999999999999998877643 355554433      33333210    00011111 11111  2


Q ss_pred             HHcCCCcEEEEECchhchhhHHHhhhcCEEEEeCC-cEEeccc
Q 026342          161 IRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADN-AIFGQTG  202 (240)
Q Consensus       161 i~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~-a~f~~pe  202 (240)
                      ......|+|++|.|+|.|||......||++|+.++ +.+++..
T Consensus       166 ~~s~~iP~Isvv~Gp~~GG~a~s~al~D~vi~~~~~a~i~~aG  208 (527)
T 1vrg_A          166 LASGVVPQITVIAGPCAGGAVYSPALTDFIVMVDQTARMFITG  208 (527)
T ss_dssp             HHTTTSCEEEEEEEEEBGGGGHHHHHSSEEEEETTTCBCBSSC
T ss_pred             HhCCCCCEEEEEeCCCchHHHHHHHcCCeEEEecCceEEEecC
Confidence            23556999999999999999998889999999998 8777643

>1x0u_A Hypothetical methylmalonyl-COA decarboxylase ALPH; lyase; 2.20A {Sulfolobus tokodaii}

Probab=95.62  E-value=0.081  Score=49.28  Aligned_cols=106  Identities=18%  Similarity=0.220  Sum_probs=71.9

Q ss_pred             EEEEEcCCC-CCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccchhhhhhhhHHHHHHH
Q 026342           82 AKITINRPD-RRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQ  160 (240)
Q Consensus        82 ~~Itlnrp~-~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~  160 (240)
                      ..|.-|++. ..-+++.+..+.+.+.++.+.+.. +=+|.|.-.+  .|-.|.+-+..         ...+ ....++.+
T Consensus       327 V~via~d~~~~gG~l~~~~~~K~ar~i~~a~~~~-~Plv~l~ds~--G~~~G~~~E~~---------G~~~-~~Ak~l~~  393 (522)
T 1x0u_A          327 VGIVANNPEEFGGSIDIDAADKAARFIRFCDAFN-IPLISLVDTP--GYVPGTDQEYK---------GIIR-HGAKMLYA  393 (522)
T ss_dssp             EEEEEECTTTGGGCBCHHHHHHHHHHHHHHHHTT-CCEEEEEEEC--CBCCSHHHHHT---------THHH-HHHHHHHH
T ss_pred             EEEEEECCCccCCCcCHHHHHHHHHHHHHHhhCC-CCEEEEecCC--CCCCchHHHHH---------HHHH-HHHHHHHH
Confidence            333444443 345799999999999999887654 4566665543  24444322110         0011 23345677


Q ss_pred             HHcCCCcEEEEECchhchhhHHHhh----hcCEEEEeCCcEEec
Q 026342          161 IRRLPKPVIAMVAGYAVGGGHVLHM----VCDLTIAADNAIFGQ  200 (240)
Q Consensus       161 i~~~~kP~IAav~G~a~GgG~~lal----~~D~rias~~a~f~~  200 (240)
                      +.+...|.|+.|-|.|.|||+....    .+|+++|.+++.+++
T Consensus       394 ~~~~~vP~Isvi~g~~~GGg~~~~a~~a~~~D~v~a~p~A~i~v  437 (522)
T 1x0u_A          394 FAEATVPKITVIVRKSYGGAHIAMSIKSLGADLVYAWPTAEIAV  437 (522)
T ss_dssp             HHHCCSCEEEEEEEEEEHHHHHHTCCGGGTCSEEEECTTCEEES
T ss_pred             HHhCCCCEEEEEeCCcccHHHHHhcccccCCCEEEEeCCCEEEe
Confidence            8889999999999999999875544    499999999998876

>3gf3_A Glutaconyl-COA decarboxylase subunit A; sodium ION transport, biotin, glutamate fermentation, lyase; HET: COO; 1.75A {Clostridium symbiosum} PDB: 3gf7_A 3glm_A* 3gma_A*

Probab=95.33  E-value=0.086  Score=49.72  Aligned_cols=113  Identities=19%  Similarity=0.222  Sum_probs=71.3

Q ss_pred             EEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccchhhhhhhhHHHHHHHH
Q 026342           82 AKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQI  161 (240)
Q Consensus        82 ~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~i  161 (240)
                      .++-.+..-+.-++.+...+.+.++++.+.+.. +=+|.|.-.|      |+.+.+- .........+.+  ...-...+
T Consensus       109 ~V~a~D~tv~gGS~g~~~~~Ki~Ra~e~A~~~~-lPvI~l~dSg------GArl~~q-e~~~~~l~~~g~--if~~~~~l  178 (588)
T 3gf3_A          109 YIVASDNKKMAGAWVPGQAENLIRCSDAAKMMH-LPLIYLLNCS------GVEFPNQ-DKVYPNRRGGGT--PFFRNSEL  178 (588)
T ss_dssp             EEEEECTTSGGGCBCTTHHHHHHHHHHHHHHHT-CCEEEEECCC------CBCGGGH-HHHSSSTTSTTH--HHHHHHHH
T ss_pred             EEEEECCcccCCCCCHHHHHHHHHHHHHHHHcC-CCEEEEEcCC------CcCcccc-cccccchhhHHH--HHHHHHHH
Confidence            344444333567889999999999999887764 3455555433      3333210 000000000111  11112345


Q ss_pred             HcCCCcEEEEECchhchhhHHHhhhcCEEEEeCCcEEeccccc
Q 026342          162 RRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPK  204 (240)
Q Consensus       162 ~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~a~f~~pe~~  204 (240)
                      .....|+|++|-|.|.|||...++++|+.++.+++.+++....
T Consensus       179 s~~~iP~Isvv~Gp~~gGgAy~a~~~~vim~~~~a~i~~aGP~  221 (588)
T 3gf3_A          179 NQLGIPVIVGIYGTNPAGGGYHSISPTILIAHQDANMAVGGAG  221 (588)
T ss_dssp             HHTTCCEEEEECSEEETHHHHHHHSSSEEEEETTCEEESSCCC
T ss_pred             hcCCCCEEEEEeCCCCchhhhHhhCCeEEEEECCcEEEecChh
Confidence            5678999999999999999877889999999999998886554

>3u9r_B MCC beta, methylcrotonyl-COA carboxylase, beta-subunit; carboxyltransferase, beta-BETA-alpha superhelix, ligase; HET: 1PE; 1.50A {Pseudomonas aeruginosa} PDB: 3u9s_B* 3u9t_B

Probab=95.23  E-value=0.095  Score=49.08  Aligned_cols=112  Identities=25%  Similarity=0.350  Sum_probs=70.2

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccchhhhhhhhHHHHHHH
Q 026342           81 IAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQ  160 (240)
Q Consensus        81 v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~  160 (240)
                      |..+..+..-+.-++.+...+.+.++++.+.+.. +=+|.|.-.|      |+.+.+- .........+.+  ...-...
T Consensus       123 v~V~a~D~tv~gGS~g~~~~~Ki~ra~e~A~~~~-lPvI~l~dSg------GARl~~q-~~~~~~~~~~~~--i~~~~~~  192 (555)
T 3u9r_B          123 CMIVGNDATVKGGTYYPLTVKKHLRAQAIALENR-LPCIYLVDSG------GANLPRQ-DEVFPDREHFGR--IFFNQAN  192 (555)
T ss_dssp             EEEEEECTTTGGGCBCHHHHHHHHHHHHHHHHHT-CCEEEEECCC------CBCGGGG-GGTSSSTTSTTH--HHHHHHH
T ss_pred             EEEEEECCccccCCCCHHHHHHHHHHHHHHHHcC-CCEEEEECCC------CCCCCCc-ceeecccccHHH--HHHHHHH
Confidence            3444444444577899999999999999988764 4455555433      3333210 000000000111  1111334


Q ss_pred             HHcCCCcEEEEECchhchhhHHHhhhcCEEEEeC-CcEEeccc
Q 026342          161 IRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAAD-NAIFGQTG  202 (240)
Q Consensus       161 i~~~~kP~IAav~G~a~GgG~~lal~~D~rias~-~a~f~~pe  202 (240)
                      +.....|+|++|.|+|.|||......||++|+.+ ++.+++..
T Consensus       193 ls~~giP~Isvv~G~~~GGga~~~a~~d~vim~e~~a~i~~aG  235 (555)
T 3u9r_B          193 MSARGIPQIAVVMGSCTAGGAYVPAMSDETVMVREQATIFLAG  235 (555)
T ss_dssp             HHHTTCCEEEEECSCCBGGGGHHHHTSSEEEEETTTCBCBSSC
T ss_pred             HhcCCCCEEEEEecCCCccHHHHHHhCCceEEecCCceEEEcc
Confidence            5667899999999999999999999999998876 47666643

>4gm2_A ATP-dependent CLP protease proteolytic subunit; structural genomics, structural genomics consortium, SGC, PR hydrolase; 2.80A {Plasmodium falciparum} PDB: 4hnk_A

Probab=94.80  E-value=0.15  Score=41.65  Aligned_cols=100  Identities=14%  Similarity=0.108  Sum_probs=67.8

Q ss_pred             CCHHHHHHHHHHHHHhhhCCCee--EEEEeeCCCCCcccCCCccccccCCccchhhhhhhhHHHHHHHHHcCCCcEEEEE
Q 026342           95 FRPHTVKELIRAFNDARDDSSVG--VIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMV  172 (240)
Q Consensus        95 l~~~~~~~L~~~l~~~~~d~~v~--vvVltg~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~IAav  172 (240)
                      ++.++.+.+...|..++.++..+  .+.|-+.|. .-   .|..      .......   ....++..|...+.||...+
T Consensus        37 I~d~~a~~iiaqLl~L~~ed~~k~I~lyINSpG~-~~---~~~~------~~~G~v~---aglaIyd~m~~~~~~V~t~~  103 (205)
T 4gm2_A           37 IYPHISEQIISQLLYLEYESKRKPIHLYINSTGD-ID---NNKI------INLNGIT---DVISIVDVINYISSDVYTYC  103 (205)
T ss_dssp             CCHHHHHHHHHHHHHHHHHCTTCCEEEEEEECTT-EE---TTEE------SCTTHHH---HHHHHHHHHHHSSSCEEEEE
T ss_pred             EcHHHHHHHHHHHHHHHhcCCCCCEEEEEeCCCC-CC---cCCC------CCCCCHH---HHHHHHHHHHhcCCCEEEEE
Confidence            88999999999998887533222  344455551 00   0000      0000000   12345677888899999999


Q ss_pred             CchhchhhHHHhhhcC--EEEEeCCcEEecccccccc
Q 026342          173 AGYAVGGGHVLHMVCD--LTIAADNAIFGQTGPKVGS  207 (240)
Q Consensus       173 ~G~a~GgG~~lal~~D--~rias~~a~f~~pe~~~Gl  207 (240)
                      -|.|.+.|.-|++++|  .|++.+++++.+-.+..|.
T Consensus       104 ~G~AaS~as~il~aG~~gkR~~lP~a~iMIHqP~~~~  140 (205)
T 4gm2_A          104 LGKAYGIACILASSGKKGYRFSLKNSSFCLNQSYSII  140 (205)
T ss_dssp             EEEEETHHHHHHTTSCTTCEEECTTCEEEECCCCCCC
T ss_pred             EeeehhHHHHHHhcCCCCCEEecCCCEEEEecCcccc
Confidence            9999999999999999  5999999999876666553

>2bzr_A Propionyl-COA carboxylase beta chain 5; fatty acid biosynthesis, accase, ligase, transferase; 2.2A {Mycobacterium tuberculosis} PDB: 2a7s_A

Probab=94.10  E-value=0.31  Score=45.61  Aligned_cols=106  Identities=19%  Similarity=0.229  Sum_probs=70.2

Q ss_pred             EEEEEcCCC-CCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccchhhhhhhhHHHHHHH
Q 026342           82 AKITINRPD-RRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQ  160 (240)
Q Consensus        82 ~~Itlnrp~-~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~  160 (240)
                      .-|.=|++. ..-+++.+-.....+.++.+++.. +=+|.|-=..  .|..|.+-++..         ..+ ....++..
T Consensus       349 Vgvian~~~~~~G~l~~~~a~Kaar~i~~a~~~~-iPlv~lvDt~--Gf~~G~~~E~~G---------i~~-~ga~~l~a  415 (548)
T 2bzr_A          349 VGIVANQPTHFAGCLDINASEKAARFVRTCDCFN-IPIVMLVDVP--GFLPGTDQEYNG---------IIR-RGAKLLYA  415 (548)
T ss_dssp             EEEEEECTTSGGGCBCHHHHHHHHHHHHHHHHTT-CCEEEEEEEC--CBCCCHHHHHTT---------HHH-HHHHHHHH
T ss_pred             EEEEEECCcccCCCCCHHHHHHHHHHHHHHHhcC-CCEEEEeecc--CCCCChHHHHhh---------HHH-HHHHHHHH
Confidence            333344543 245799999999999999887653 4455444322  355554432210         011 23455677


Q ss_pred             HHcCCCcEEEEECchhchhhHHHhh----hcCEEEEeCCcEEec
Q 026342          161 IRRLPKPVIAMVAGYAVGGGHVLHM----VCDLTIAADNAIFGQ  200 (240)
Q Consensus       161 i~~~~kP~IAav~G~a~GgG~~lal----~~D~rias~~a~f~~  200 (240)
                      +.+...|+|+.|-|.|.|||+.-..    .+|+++|.++++++.
T Consensus       416 ~~~~~VP~isvI~g~~~Ggg~~am~~~~~~~d~~~awp~a~i~V  459 (548)
T 2bzr_A          416 YGEATVPKITVITRKAYGGAYCVMGSKDMGCDVNLAWPTAQIAV  459 (548)
T ss_dssp             HHHCCSCEEEEEEEEEEHHHHHHTTCGGGTCSEEEECTTCEEES
T ss_pred             HhCCCCCEEEEEeCCcchHHHHHhccccCCCCEEEEcCCCEEEe
Confidence            8889999999999999998875443    389999988888865

>1vrg_A Propionyl-COA carboxylase, beta subunit; TM0716, structural joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE; 2.30A {Thermotoga maritima} SCOP: c.14.1.4 c.14.1.4

Probab=94.01  E-value=0.4  Score=44.60  Aligned_cols=109  Identities=15%  Similarity=0.135  Sum_probs=69.7

Q ss_pred             CCEEEEEEcCCC-CCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccchhhhhhhhHHHH
Q 026342           79 EGIAKITINRPD-RRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDL  157 (240)
Q Consensus        79 ~~v~~Itlnrp~-~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l  157 (240)
                      +.-..|.=|++. ..-.++++-.....+.++.+++.. +=+|.|.=..  .|..|.+-+...         ..+ ....+
T Consensus       329 G~~V~via~~~~~~~G~~~~~~~~Kaar~i~~a~~~~-~Plv~lvDtp--G~~~G~~~E~~g---------~~~-~~A~~  395 (527)
T 1vrg_A          329 GKTVGIVANQPSVLAGVLDIDSSDKAARFIRFLDAFN-IPILTFVDTP--GYLPGVAQEHGG---------IIR-HGAKL  395 (527)
T ss_dssp             TEEEEEEEECTTSGGGCBCHHHHHHHHHHHHHHHHTT-CCEEEEEEEC--CBCCCHHHHHTT---------HHH-HHHHH
T ss_pred             CEEEEEEEEcCcccCCCCCHHHHHHHHHHHHHHhhcC-CCeEEEecCC--CCcCchhhHHhH---------HHH-HHHHH
Confidence            333334444543 235799999999999998886543 4455554322  254443322110         111 23456


Q ss_pred             HHHHHcCCCcEEEEECchhchhhHHHhhh----cCEEEEeCCcEEec
Q 026342          158 QVQIRRLPKPVIAMVAGYAVGGGHVLHMV----CDLTIAADNAIFGQ  200 (240)
Q Consensus       158 ~~~i~~~~kP~IAav~G~a~GgG~~lal~----~D~rias~~a~f~~  200 (240)
                      +.++.+...|+|+.|-|.|.|||+.-...    +|+++|.+++.++.
T Consensus       396 ~~a~~~~~vP~isvI~g~~~gGg~~am~~~~~~~d~~~a~p~a~~~V  442 (527)
T 1vrg_A          396 LYAYSEATVPKITVILRKAYGGAYIAMGSKHLGADMVLAWPSAEIAV  442 (527)
T ss_dssp             HHHHHHCCSCEEEEEEEEEEHHHHHHTTCGGGTCSEEEECTTCEEES
T ss_pred             HHHHhcCCCCEEEEEeCCcccHHHHHhcCCCCCCCEEEEcCCCeEEe
Confidence            67888899999999999999888744433    89988888888764

>3iav_A Propionyl-COA carboxylase complex B subunit; accase, pccase, ACC, PCC, CT, carboxyltransfe polyketide, fatty acid, PKS, FAS; 1.75A {Streptomyces coelicolor} PDB: 1xnw_A 3ib9_A* 3ibb_A 3mfm_C 1xny_A* 1xnv_A* 1xo6_A

Probab=93.88  E-value=0.45  Score=44.29  Aligned_cols=109  Identities=20%  Similarity=0.200  Sum_probs=73.4

Q ss_pred             CCCEEEEEEcCCC-CCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccchhhhhhhhHHH
Q 026342           78 GEGIAKITINRPD-RRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLD  156 (240)
Q Consensus        78 ~~~v~~Itlnrp~-~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~  156 (240)
                      ++.-.-|.=|+|. ..-+++++......+.++.+++.. +=+|.|.=..  .|-.|.+-+.         ....+ ....
T Consensus       330 ~G~~Vgvian~~~~~~G~l~~~~a~Kaarfi~~c~~~~-iPlv~lvDtp--Gf~~G~~~E~---------~gi~~-~~Ak  396 (530)
T 3iav_A          330 EGRPVGIVANQPMQFAGCLDITASEKAARFVRTCDAFN-VPVLTFVDVP--GFLPGVDQEH---------DGIIR-RGAK  396 (530)
T ss_dssp             TTEEEEEEEECTTSGGGCBCHHHHHHHHHHHHHHHHTT-CCEEEEEEEC--CBCCCHHHHH---------TTHHH-HHHH
T ss_pred             CCEEEEEEEecCcccCCCCCHHHHHHHHHHHHHHHhcC-CCEEEEeeCC--CCCccHHHHH---------hhHHH-HHHH
Confidence            3443444445654 235799999999999998887654 4555554332  2555544221         11111 3456


Q ss_pred             HHHHHHcCCCcEEEEECchhchhhHHHhhh-----cCEEEEeCCcEEec
Q 026342          157 LQVQIRRLPKPVIAMVAGYAVGGGHVLHMV-----CDLTIAADNAIFGQ  200 (240)
Q Consensus       157 l~~~i~~~~kP~IAav~G~a~GgG~~lal~-----~D~rias~~a~f~~  200 (240)
                      ++.++.+...|+|+.|-|.+.|||+ ++++     +|+++|.+++.++.
T Consensus       397 ~l~a~a~a~vP~itvI~g~~~GGa~-~am~~~~~~~d~~~awp~a~~~V  444 (530)
T 3iav_A          397 LIFAYAEATVPLITVITRKAFGGAY-VVMGSKHLGADLNLAWPTAQIAV  444 (530)
T ss_dssp             HHHHHHHCCSCEEEEEEEEEEHHHH-HHTTCGGGTCSEEEECTTCEEES
T ss_pred             HHHHHHhCCCCEEEEEeCCcchHHH-HHhcCCCCCCCEEEEcCCceEec
Confidence            7788899999999999999998776 5554     79999988888875

>3k8x_A Acetyl-COA carboxylase; transferase, carboxyltransferase, AC tepraloxydim, ATP-binding, biotin, fatty acid biosynthesis; HET: B89; 2.30A {Saccharomyces cerevisiae} PDB: 1w2x_A* 3h0s_A* 3h0j_A* 3h0q_A* 1od2_A* 1od4_A* 3pgq_A* 3tvu_A* 3tv5_A* 3tvw_A* 3tz3_A* 1uyr_A* 1uys_A* 1uyt_A 1uyv_A

Probab=93.73  E-value=0.041  Score=53.16  Aligned_cols=38  Identities=21%  Similarity=0.102  Sum_probs=34.2

Q ss_pred             CCCcEEEEECchhchhhHHHhhhcCEEEEeCCcEEecc
Q 026342          164 LPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQT  201 (240)
Q Consensus       164 ~~kP~IAav~G~a~GgG~~lal~~D~rias~~a~f~~p  201 (240)
                      -..|+|++|.|+|.|||..+...||++|+.+++.+.+.
T Consensus       245 ~~IPqIsvV~G~c~GGgAY~paL~D~vImv~~s~iflt  282 (758)
T 3k8x_A          245 HDIFTITLVTCRSVGIGAYLVRLGQRAIQVEGQPIILT  282 (758)
T ss_dssp             TTSCEEEEECSCEETHHHHHHHHTCEEEEETTCCEESS
T ss_pred             cCCCEEEEEccCCchHHHHHHhhCCEEEEECCceEEEe
Confidence            36799999999999999999999999999999876653

>1on3_A Methylmalonyl-COA carboxyltransferase 12S subunit; domain duplication, multienzyme complex, transcarboxylase; HET: MCA; 1.90A {Propionibacterium freudenreichii} SCOP: c.14.1.4 c.14.1.4 PDB: 1on9_A*

Probab=93.57  E-value=0.49  Score=44.01  Aligned_cols=106  Identities=17%  Similarity=0.144  Sum_probs=69.9

Q ss_pred             EEEEEcCCC-CCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccchhhhhhhhHHHHHHH
Q 026342           82 AKITINRPD-RRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQ  160 (240)
Q Consensus        82 ~~Itlnrp~-~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~  160 (240)
                      .-|.=|+|. ..-.++++-.....+.++.++.. ++=+|.|.=.  ..|..|.+-+..         ...+ ....++..
T Consensus       328 Vgvian~~~~~~G~~~~~~a~Kaar~i~~~~~~-~iPlv~lvDt--pGf~~G~~~E~~---------Gi~~-~~A~~l~a  394 (523)
T 1on3_A          328 VGIVANQPSVMSGCLDINASDKAAEFVNFCDSF-NIPLVQLVDV--PGFLPGVQQEYG---------GIIR-HGAKMLYA  394 (523)
T ss_dssp             EEEEEECTTSGGGCBCHHHHHHHHHHHHHHHHT-TCCEEEEEEE--CCBCCCHHHHHT---------THHH-HHHHHHHH
T ss_pred             EEEEEecCCccCCCCCHHHHHHHHHHHHHHHhc-CCCeEEEEeC--CCcCcchHHHHh---------hHHH-HHHHHHHH
Confidence            334445553 23579999999999999888754 3445555432  236555442211         0111 23456778


Q ss_pred             HHcCCCcEEEEECchhchhhHHHhhh----cCEEEEeCCcEEec
Q 026342          161 IRRLPKPVIAMVAGYAVGGGHVLHMV----CDLTIAADNAIFGQ  200 (240)
Q Consensus       161 i~~~~kP~IAav~G~a~GgG~~lal~----~D~rias~~a~f~~  200 (240)
                      +.+...|+|+.|-|.+.|||+.-...    +|+++|.+++.++.
T Consensus       395 ~a~~~vP~itvI~g~~~Ggg~~am~~~~~~~d~~~a~p~a~~~V  438 (523)
T 1on3_A          395 YSEATVPKITVVLRKAYGGSYLAMCNRDLGADAVYAWPSAEIAV  438 (523)
T ss_dssp             HHHCCSCEEEEEEEEEEHHHHHTTTCGGGTCSEEEECTTCEEES
T ss_pred             HhcCCCCEEEEEeCCcccHHHHHhcccCCCCCEEEEcCCCeEEe
Confidence            88999999999999999988754444    88888888877764

>3n6r_B Propionyl-COA carboxylase, beta subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Roseobacter denitrificans}

Probab=93.47  E-value=0.59  Score=43.53  Aligned_cols=110  Identities=15%  Similarity=0.146  Sum_probs=72.8

Q ss_pred             CCCEEEEEEcCCCC-CCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccchhhhhhhhHHH
Q 026342           78 GEGIAKITINRPDR-RNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLD  156 (240)
Q Consensus        78 ~~~v~~Itlnrp~~-~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~  156 (240)
                      ++.-.-|.=|+|.. .-.++++......+.++.+++.. +=+|.|.=..  .|-.|.+-+..         ...+ ....
T Consensus       336 ~G~~Vgvian~~~~~~G~l~~~~a~Kaarfi~lcd~~~-iPlv~lvDtp--Gf~~G~~~E~~---------Gi~~-~gAk  402 (531)
T 3n6r_B          336 EGRTVGVVANQPLVLAGCLDIDSSRKAARFVRFCDAFE-IPLLTLIDVP--GFLPGTSQEYG---------GVIK-HGAK  402 (531)
T ss_dssp             TTEEEEEEEECTTTGGGCBCHHHHHHHHHHHHHHHHTT-CCEEEEEEEC--SBCCSHHHHHT---------THHH-HHHH
T ss_pred             CCEEEEEEEecccccCCCCCHHHHHHHHHHHHHhhccC-CCEEEEeCCC--CCCCCHHHHHh---------hHHH-HHHH
Confidence            34334444456542 35799999999999998887653 4455554332  35555432211         0111 3456


Q ss_pred             HHHHHHcCCCcEEEEECchhchhhHHHhhh----cCEEEEeCCcEEec
Q 026342          157 LQVQIRRLPKPVIAMVAGYAVGGGHVLHMV----CDLTIAADNAIFGQ  200 (240)
Q Consensus       157 l~~~i~~~~kP~IAav~G~a~GgG~~lal~----~D~rias~~a~f~~  200 (240)
                      ++.++.++..|+|+.|-|.+.|||+.-...    +|+++|.+++.++.
T Consensus       403 ~l~a~a~a~VP~itvI~g~~~Ggg~~am~~~~~~~d~~~awp~A~i~V  450 (531)
T 3n6r_B          403 LLYAYGEATVPMVTVITRKAYGGAYVVMSSKHLRADFNYAWPTAEVAV  450 (531)
T ss_dssp             HHHHHHHCCSCEEEEEEEEEEHHHHHHTTCGGGTCSEEEECTTCEEES
T ss_pred             HHHHHHhCCCCEEEEEcCCccchhhhhccCccCCCCeEEEcCCceEec
Confidence            778899999999999999999988743332    99999988888875

>2x24_A Acetyl-COA carboxylase; fatty acid biosynthesis, ligase, lipid synthesis; HET: X24; 2.40A {Bos taurus} PDB: 3ff6_A* 3tdc_A*

Probab=92.47  E-value=0.079  Score=51.53  Aligned_cols=39  Identities=28%  Similarity=0.214  Sum_probs=35.4

Q ss_pred             CCCcEEEEECchhchhhHHHhhhcCEEEEeCCcEEeccc
Q 026342          164 LPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTG  202 (240)
Q Consensus       164 ~~kP~IAav~G~a~GgG~~lal~~D~rias~~a~f~~pe  202 (240)
                      ...|+|++|.|.|.|||..++..||++|+.+++.+.+..
T Consensus       258 ~~iP~IsvV~G~~~GGgAy~~~lgD~vI~~~~a~i~ltG  296 (793)
T 2x24_A          258 DEIVTISMVSCRALGIGAYLVRLGQRVIQVENSHIILTG  296 (793)
T ss_dssp             HHSCEEEEECSEEETHHHHHHHHTCCEEEETTCEEESSC
T ss_pred             CCCCEEEEEecCCchHHHHHHhhCCeEEEeccccEEecC
Confidence            369999999999999999999999999999998877643

>2w3p_A Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ring cleaving, burkholderia xenovorans LB400 crotonase; 1.50A {Burkholderia xenovorans}

Probab=91.76  E-value=1.4  Score=41.12  Aligned_cols=171  Identities=13%  Similarity=0.106  Sum_probs=100.7

Q ss_pred             cceeEEEEEEeCCCEEEEEEcCCCCCC-------------CCCHHHHHHHHHHHHHh-hhCCCeeEEEEeeCCCCCcccC
Q 026342           67 EFTDIIYEKAVGEGIAKITINRPDRRN-------------AFRPHTVKELIRAFNDA-RDDSSVGVIILTGKGTEAFCSG  132 (240)
Q Consensus        67 ~~~~v~~~~~~~~~v~~Itlnrp~~~N-------------al~~~~~~~L~~~l~~~-~~d~~v~vvVltg~g~~~FcaG  132 (240)
                      .|..+....+...+++.++...|....             ..-..|..||.+++-.+ -++.++...++...|+..---.
T Consensus       264 ~y~~~~~ai~ra~r~a~~~~~g~~~a~~~~ld~i~aa~~~~~~l~~~~el~~All~l~~ne~~~~~~~~~t~g~~~~~~~  343 (556)
T 2w3p_A          264 TYKTLDVTIDRAKRIATFTAKAPQTEPPASIDAIVAAGANWWPLKFAREFDDAILSMRTNELAVGTWVFRTEGDARHLLA  343 (556)
T ss_dssp             EETTEEEEEETTTTEEEEEEECCSSCCCCSHHHHHHHGGGSHHHHHHHHHHHHHHHHHHHCSSCCEEEEEEESCHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHhcCCCCCchhhHHHHHHhhhcchhhhhhhHHHHHHHhhhhccHHHhHhhhhccCCHHHHhh
Confidence            344444444446789999998875322             22245778885555544 4678888888888873110000


Q ss_pred             CCccccccCCccchhhhhhhhHHHHHHHHHcCCCcEEEEE-Cchhchhh-HHHhhhcCEEEEeC-------CcEEecccc
Q 026342          133 GDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMV-AGYAVGGG-HVLHMVCDLTIAAD-------NAIFGQTGP  203 (240)
Q Consensus       133 ~Dl~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~IAav-~G~a~GgG-~~lal~~D~rias~-------~a~f~~pe~  203 (240)
                      .|-- +........-.....++.+.+.++--...-++|.| .|.|+.|- +||+++||..++-+       .+.+.+.+.
T Consensus       344 ~~~~-~~~~~~~~~~~~~~~~~~~~~~r~d~~~~~~~~~~~~~~~~~g~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~  422 (556)
T 2w3p_A          344 ADAS-LMQHKDHWFVRETIGLLRRTLARIDVSSRSLFALIEPGSCFAGTFAELAFAADRTYMAALPANEDEEPAITLSEV  422 (556)
T ss_dssp             HHHH-HHHTTTSHHHHHHHHHHHHHHHHHHTCSSEEEEEECTTCCEEGGGHHHHHTSSEEEECCCTTCTTTSCCEECCGG
T ss_pred             hHHH-HHhccchHHHHHHHHHHHHHHHHhcccchhheeeecCCcchHHHHHHHHHHhhhhhhhcCCCCCCCCceeEeecc
Confidence            1100 00000000000011123445556666777789988 57888765 78999999999963       278999999


Q ss_pred             cccccCCCchHHHHHhh-cCHHHHHH--HHhcCCcccc
Q 026342          204 KVGSFDAGYGSSIMSRL-VSTVQQCL--WWGLKKHVKC  238 (240)
Q Consensus       204 ~~Gl~p~~g~~~~l~rl-vG~~~a~e--llltG~~i~A  238 (240)
                      ++|.+|-.-+..+|.++ .|.....+  -...|+.++|
T Consensus       423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  460 (556)
T 2w3p_A          423 NFGLYPMVTHQSRLARRFYEETEPLDAVRSRIGQAIKP  460 (556)
T ss_dssp             GGTTSCCTTSSCHHHHHTTTCHHHHHHHHTTTTSCBCH
T ss_pred             ccCcccCCCchhHHHHHhcCCcchHHHHHHHhCCCCCH
Confidence            99999977777777644 45433332  1233666554

>3u9r_B MCC beta, methylcrotonyl-COA carboxylase, beta-subunit; carboxyltransferase, beta-BETA-alpha superhelix, ligase; HET: 1PE; 1.50A {Pseudomonas aeruginosa} PDB: 3u9s_B* 3u9t_B

Probab=90.40  E-value=1.8  Score=40.40  Aligned_cols=94  Identities=14%  Similarity=0.156  Sum_probs=66.1

Q ss_pred             CCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccchhhhhhhhHHHHHHHHHcCCCcEEEEE
Q 026342           93 NAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMV  172 (240)
Q Consensus        93 Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~IAav  172 (240)
                      -.++++......+.++.+++. ++=+|.|.=..  .|..|.+-+..         ...+ ....++.++.++..|+|+.|
T Consensus       366 G~l~~~~a~Kaarfi~~c~~~-~iPlv~lvDtp--Gf~~G~~~E~~---------Gi~~-~gAk~~~a~~~a~vP~itvi  432 (555)
T 3u9r_B          366 GILFAEAAQKGAHFIELACQR-GIPLLFLQNIT--GFMVGQKYEAG---------GIAK-HGAKLVTAVACARVPKFTVL  432 (555)
T ss_dssp             SSBCHHHHHHHHHHHHHHHHH-TCCEEEEEEEC--CBCCSHHHHHT---------THHH-HHHHHHHHHHHCCSCEEEEE
T ss_pred             CccCHHHHHHHHHHHHHHhcC-CCCEEEEecCc--CCCCCHHHHHH---------HHHH-HHHHHHHHHHhCCCCEEEEE
Confidence            579999999999999988764 35566665543  35555442211         0111 24466778999999999999


Q ss_pred             CchhchhhHHHhhh-----cCEEEEeCCcEEec
Q 026342          173 AGYAVGGGHVLHMV-----CDLTIAADNAIFGQ  200 (240)
Q Consensus       173 ~G~a~GgG~~lal~-----~D~rias~~a~f~~  200 (240)
                      -|.+.|||. ++++     +|+++|.+++.++.
T Consensus       433 ~g~~~Ggg~-~am~~~~~~~d~~~a~p~A~i~V  464 (555)
T 3u9r_B          433 IGGSFGAGN-YGMCGRAYDPRFLWMWPNARIGV  464 (555)
T ss_dssp             EEEEETTHH-HHTTCGGGCCSEEEECTTCEEES
T ss_pred             eCCccchhh-HhhcCccCCCCeEEEcCCcEEEc
Confidence            999888764 4444     79999988888875

>1pix_A Glutaconyl-COA decarboxylase A subunit; biotin-dependent ION pump, carboxyltransferase, lyase; 2.20A {Acidaminococcus fermentans} SCOP: c.14.1.4 c.14.1.4

Probab=89.43  E-value=2.3  Score=40.00  Aligned_cols=95  Identities=8%  Similarity=0.061  Sum_probs=67.2

Q ss_pred             CCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccchhhhhhhhHHHHHHHHHcCCCcEEEE
Q 026342           92 RNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAM  171 (240)
Q Consensus        92 ~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~IAa  171 (240)
                      .-.++++-.....+.++.++.. ++=+|.|.=.  ..|..|.+-+..         ...+ ....++.++.++..|+|+.
T Consensus       384 ~G~l~~~~a~Kaarfi~~c~~~-~iPlv~lvDt--pGf~~G~~~E~~---------Gi~~-~gA~~~~a~a~a~vP~itv  450 (587)
T 1pix_A          384 GGKLYRQGLVKMNEFVTLCARD-RLPIVWIQDT--TGIDVGNDAEKA---------ELLG-LGQSLIYSIQTSHIPQFEI  450 (587)
T ss_dssp             TTEECHHHHHHHHHHHHHHHHT-TCCEEEEECC--CEECCSHHHHHT---------THHH-HHHHHHHHHHTCCCCEEEE
T ss_pred             CCCcCHHHHHHHHHHHHHhhcC-CCCeEEEecC--CCCCCcHHHHHH---------HHHH-HHHHHHHHHHhCCCCEEEE
Confidence            4579999999999999877654 4556666543  246655442211         0111 3456788899999999999


Q ss_pred             ECchhchhhHHHhhh-----c--CEEEEeCCcEEec
Q 026342          172 VAGYAVGGGHVLHMV-----C--DLTIAADNAIFGQ  200 (240)
Q Consensus       172 v~G~a~GgG~~lal~-----~--D~rias~~a~f~~  200 (240)
                      |-|.+.|||+ ++++     +  |+++|.+++.++.
T Consensus       451 I~g~~~Ggg~-~am~~~~~~~~~d~~~a~p~A~~~V  485 (587)
T 1pix_A          451 TLRKGTAAAH-YVLGGPQGNDTNAFSIGTAATEIAV  485 (587)
T ss_dssp             ECSEEETTHH-HHTTCTTCTTTEEEEEECTTCEEES
T ss_pred             EcCCCccHHH-HHhcCcccCcccceeeeccCCeEec
Confidence            9999998875 5555     4  9988888888764

>3k8x_A Acetyl-COA carboxylase; transferase, carboxyltransferase, AC tepraloxydim, ATP-binding, biotin, fatty acid biosynthesis; HET: B89; 2.30A {Saccharomyces cerevisiae} PDB: 1w2x_A* 3h0s_A* 3h0j_A* 3h0q_A* 1od2_A* 1od4_A* 3pgq_A* 3tvu_A* 3tv5_A* 3tvw_A* 3tz3_A* 1uyr_A* 1uys_A* 1uyt_A 1uyv_A

Probab=84.43  E-value=2.3  Score=41.17  Aligned_cols=95  Identities=19%  Similarity=0.269  Sum_probs=64.1

Q ss_pred             CCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccchhhhhhhhHHHHHHHHHcCCCcEEEEE
Q 026342           93 NAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMV  172 (240)
Q Consensus        93 Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~IAav  172 (240)
                      ..++++-.....+.++.+++..++=+|.|.=.  ..|..|.+-+..         ...+ ....++.++.++..|+|+.|
T Consensus       447 G~l~pe~a~KaArfI~lcd~~f~iPLv~LvDt--pGf~~G~~aE~~---------Gi~k-~gAkll~A~a~a~VP~itVI  514 (758)
T 3k8x_A          447 QVWHPNSAFKTAQAINDFNNGEQLPMMILANW--RGFSGGQRDMFN---------EVLK-YGSFIVDALVDYKQPIIIYI  514 (758)
T ss_dssp             TEECHHHHHHHHHHHHHHHHTSCCCEEECCCC--CEECCSHHHHHT---------THHH-HHHHHHHHHHTCCSCEEEEE
T ss_pred             CCCCHHHHHHHHHHHHHhhhccCCCEEEEecC--CCCCCCHHHHHc---------cHHH-HHHHHHHHHHhCCCCEEEEE
Confidence            46889999999999999887344556666533  346666542211         1111 34567889999999999999


Q ss_pred             C--chhchhhHHHhhh----cCE--EEEeCCcEEec
Q 026342          173 A--GYAVGGGHVLHMV----CDL--TIAADNAIFGQ  200 (240)
Q Consensus       173 ~--G~a~GgG~~lal~----~D~--rias~~a~f~~  200 (240)
                      -  |.+.||++ ++++    +|+  ++|-+++.++.
T Consensus       515 ~RkGe~~GGA~-~am~~~~~ad~~~v~Awp~A~isV  549 (758)
T 3k8x_A          515 PPTGELRGGSW-VVVDPTINADQMEMYADVNARAGV  549 (758)
T ss_dssp             CTTCEEETHHH-HTTCGGGSTTTEEEEEETTCEEES
T ss_pred             ecCCccchHHH-HHhCcccCCCHHHHhcCCCCEEEc
Confidence            8  88988877 5555    454  66655555543

>2x24_A Acetyl-COA carboxylase; fatty acid biosynthesis, ligase, lipid synthesis; HET: X24; 2.40A {Bos taurus} PDB: 3ff6_A* 3tdc_A*

Probab=82.84  E-value=5.3  Score=38.88  Aligned_cols=95  Identities=13%  Similarity=0.167  Sum_probs=63.5

Q ss_pred             CCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccchhhhhhhhHHHHHHHHHcCCCcEEEEE
Q 026342           93 NAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMV  172 (240)
Q Consensus        93 Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~IAav  172 (240)
                      -.++++-.....+.++.++.. ++=+|.|.=.  ..|..|.+-+..         ...+ ....++.++.++.+|+|+.|
T Consensus       462 G~l~~~~a~KaarfI~~cd~f-~iPlv~LvDt--pGf~~G~~aE~~---------Gi~~-~gAkll~A~a~a~VP~itvI  528 (793)
T 2x24_A          462 QVWFPDSAYKTAQAIKDFNRE-KLPLMIFANW--RGFSGGMKDMYD---------QVLK-FGAYIVDGLRKYRQPVLIYI  528 (793)
T ss_dssp             TEECHHHHHHHHHHHHHHHTT-TCCEEEECCB--CEECCSHHHHHT---------THHH-HHHHHHHHHHTCCSCEEEEE
T ss_pred             CcccHHHHHHHHHHHHHhccC-CCCEEEEecC--CCCCCCHHHHHh---------hHHH-HHHHHHHHHHhcCCCEEEEE
Confidence            469999999999999999754 4556666543  346666542211         1111 34567889999999999999


Q ss_pred             --CchhchhhHHHh---hhcCE--EEEeCCcEEec
Q 026342          173 --AGYAVGGGHVLH---MVCDL--TIAADNAIFGQ  200 (240)
Q Consensus       173 --~G~a~GgG~~la---l~~D~--rias~~a~f~~  200 (240)
                        .|-+.||++.+.   +..|+  ++|.++++++.
T Consensus       529 ~r~Ge~~GGa~~~~~~~~~~d~~ev~Awp~A~~~V  563 (793)
T 2x24_A          529 PPYAEVRGGSWAVMDTSINPLCIEMYADRESRASV  563 (793)
T ss_dssp             CTTCEEEHHHHHTTCGGGSTTTEEEEEETTCEEES
T ss_pred             ecCCcccchhHHhhhcccCccHHHHhhhccCEEEe
Confidence              898877665433   34565  56666666654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	240
d1mj3a_	260	c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {Rat	5e-36
d1q52a_	297	c.14.1.3 (A:) Naphthoate synthase MenB {Mycobacter	7e-28
d1dcia_	275	c.14.1.3 (A:) Dienoyl-CoA isomerase (delta3-delta2	8e-24
d1uiya_	253	c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {The	3e-22
d1nzya_	269	c.14.1.3 (A:) 4-Chlorobenzoyl-CoA dehalogenase {Ps	9e-20
d2f6qa1	245	c.14.1.3 (A:108-352) Peroxisomal 3,2-trans-enoyl-C	5e-17
d1hzda_	266	c.14.1.3 (A:) AUH protein {Human (Homo sapiens) [T	7e-17
d1wdka4	310	c.14.1.3 (A:1-310) Fatty oxidation complex alpha s	4e-15
d1ef8a_	261	c.14.1.3 (A:) Methylmalonyl CoA decarboxylase {Esc	2e-13
d1pjha_	266	c.14.1.3 (A:) Dienoyl-CoA isomerase (delta3-delta2	5e-13
d1szoa_	249	c.14.1.3 (A:) 6-oxo camphor hydrolase {Rhodococcus	1e-11
d1wz8a1	263	c.14.1.3 (A:2-264) Probable enoyl-CoA hydratase TT	6e-11
d2fw2a1	258	c.14.1.3 (A:3-260) Chromodomain protein CDY2A {Hum	7e-11
d2a7ka1	230	c.14.1.3 (A:1-230) Carbapenem biosynthes protein C	1e-09
d1sg4a1	249	c.14.1.3 (A:2-250) Dienoyl-CoA isomerase (delta3-d	7e-09
d1uyra1	333	c.14.1.4 (A:1482-1814) Acetyl-coenzyme A carboxyla	0.001

>d1mj3a_ c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 260

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Enoyl-CoA hydratase (crotonase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  126 bits (316), Expect = 5e-36
 Identities = 51/155 (32%), Positives = 72/155 (46%), Gaps = 5/155 (3%)

Query: 68  FTDIIYEK-AVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGT 126
           F  II EK      +  I +NRP   NA     ++EL +A     +D +VG I+LTG   
Sbjct: 3   FQYIITEKKGKNSSVGLIQLNRPKALNALCNGLIEELNQALETFEEDPAVGAIVLTGGEK 62

Query: 127 EAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMV 186
                   + ++ R     Y        L     I R+ KPVIA V GYA+GGG  L M+
Sbjct: 63  AFAAGADIKEMQNRTFQDCYSG----KFLSHWDHITRIKKPVIAAVNGYALGGGCELAMM 118

Query: 187 CDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLV 221
           CD+  A + A FGQ    +G+     G+  ++R V
Sbjct: 119 CDIIYAGEKAQFGQPEILLGTIPGAGGTQRLTRAV 153

>d1q52a_ c.14.1.3 (A:) Naphthoate synthase MenB {Mycobacterium tuberculosis [TaxId: 1773]} Length = 297

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Naphthoate synthase MenB
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score =  105 bits (262), Expect = 7e-28
 Identities = 78/205 (38%), Positives = 105/205 (51%), Gaps = 19/205 (9%)

Query: 51  PSHDVVWRIACDESGTEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDA 110
           P     WR+   +   + TDI Y + V +   ++  NRP+ RNAFRPHTV EL R  + A
Sbjct: 2   PFDAKAWRLV--DGFDDLTDITYHRHVDDATVRVAFNRPEVRNAFRPHTVDELYRVLDHA 59

Query: 111 RDDSSVGVIILTGKGTEAFC----------------SGGDQALRTRDGYADYENFGRLNV 154
           R    VGV++LTG G                     SG   A        D    GRL++
Sbjct: 60  RMSPDVGVVLLTGNGPSPKDGGWAFCSGGDQRIRGRSGYQYASGDTADTVDVARAGRLHI 119

Query: 155 LDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAA-DNAIFGQTGPKVGSFDAGYG 213
           L++Q  IR +PK VI +V G+A GGGH LH+VCDLT+A+ + A F QT   VGSFD GYG
Sbjct: 120 LEVQRLIRFMPKVVICLVNGWAAGGGHSLHVVCDLTLASREYARFKQTDADVGSFDGGYG 179

Query: 214 SSIMSRLVSTVQQCLWWGLKKHVKC 238
           S+ ++R V        + L +    
Sbjct: 180 SAYLARQVGQKFAREIFFLGRTYTA 204

>d1dcia_ c.14.1.3 (A:) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 275

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 94.4 bits (233), Expect = 8e-24
 Identities = 34/181 (18%), Positives = 58/181 (32%), Gaps = 10/181 (5%)

Query: 68  FTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTE 127
           +  I       + +  + +NRP++RNA      +EL+  F     DS    ++++G G  
Sbjct: 2   YESIQVTS-AQKHVLHVQLNRPEKRNAMNRAFWRELVECFQKISKDSDCRAVVVSGAGKM 60

Query: 128 AFCSGGDQALRTRDG---------YADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVG 178
                    + +             A Y              I + PKPVIA + G  +G
Sbjct: 61  FTSGIDLMDMASDILQPPGDDVARIAWYLRDLISRYQKTFTVIEKCPKPVIAAIHGGCIG 120

Query: 179 GGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVSTVQQCLWWGLKKHVKC 238
           GG  L   CD+     +A F      VG          + +++                 
Sbjct: 121 GGVDLISACDIRYCTQDAFFQVKEVDVGLAADVGTLQRLPKVIGNRSLVNELTFTARKMM 180

Query: 239 G 239
            
Sbjct: 181 A 181

>d1uiya_ c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {Thermus thermophilus [TaxId: 274]} Length = 253

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Enoyl-CoA hydratase (crotonase)
species: Thermus thermophilus [TaxId: 274]

 Score = 89.8 bits (221), Expect = 3e-22
 Identities = 37/122 (30%), Positives = 58/122 (47%), Gaps = 1/122 (0%)

Query: 80  GIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQAL-R 138
            +A + +N P+RRN   P     L++A +D   D  V  ++LTG+G           L R
Sbjct: 8   HVAVVFLNDPERRNPLSPEMALSLLQALDDLEADPGVRAVVLTGRGKAFSAGADLAFLER 67

Query: 139 TRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIF 198
             +  A+      L+++ L  ++   PKP +A V G AV GG  L + CDL +  + A  
Sbjct: 68  VTELGAEENYRHSLSLMRLFHRVYTYPKPTVAAVNGPAVAGGAGLALACDLVVMDEEARL 127

Query: 199 GQ 200
           G 
Sbjct: 128 GY 129

>d1nzya_ c.14.1.3 (A:) 4-Chlorobenzoyl-CoA dehalogenase {Pseudomonas sp., strain CBS-3 [TaxId: 306]} Length = 269

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: 4-Chlorobenzoyl-CoA dehalogenase
species: Pseudomonas sp., strain CBS-3 [TaxId: 306]

 Score = 83.3 bits (204), Expect = 9e-20
 Identities = 45/174 (25%), Positives = 78/174 (44%), Gaps = 5/174 (2%)

Query: 68  FTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTE 127
           +  I +   V +G+A+ITI  P  RNA     ++E+  A N A +D SVG +++TG    
Sbjct: 2   YEAIGHR--VEDGVAEITIKLPRHRNALSVKAMQEVTDALNRAEEDDSVGAVMITGAEDA 59

Query: 128 AFCSGGDQALRTRDGYADYENFGRLNVLDLQ---VQIRRLPKPVIAMVAGYAVGGGHVLH 184
                  + +    G A   +  R+  L       +I R+ +PV+A + G A GGG  + 
Sbjct: 60  FCAGFYLREIPLDKGVAGVRDHFRIAALWWHQMIHKIIRVKRPVLAAINGVAAGGGLGIS 119

Query: 185 MVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVSTVQQCLWWGLKKHVKC 238
           +  D+ I AD+A F      +G  +    S  ++R+V   +        + +  
Sbjct: 120 LASDMAICADSAKFVCAWHTIGIGNDTATSYSLARIVGMRRAMELMLTNRTLYP 173

>d2f6qa1 c.14.1.3 (A:108-352) Peroxisomal 3,2-trans-enoyl-CoA isomerase {Human (Homo sapiens) [TaxId: 9606]} Length = 245

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Peroxisomal 3,2-trans-enoyl-CoA isomerase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 75.6 bits (184), Expect = 5e-17
 Identities = 41/165 (24%), Positives = 65/165 (39%), Gaps = 5/165 (3%)

Query: 68  FTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTE 127
           F  ++      +GI KI  NRP ++NA       E++RA   A  D S+ + +LTG G  
Sbjct: 2   FETLVVTSE--DGITKIMFNRPKKKNAINTEMYHEIMRALKAASKDDSI-ITVLTGNGDY 58

Query: 128 AFCSG--GDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHM 185
                   +       G  +      + + +        PKP+IA+V G AVG    L  
Sbjct: 59  YSSGNDLTNFTDIPPGGVEEKAKNNAVLLREFVGCFIDFPKPLIAVVNGPAVGISVTLLG 118

Query: 186 VCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVSTVQQCLWW 230
           + D   A+D A F      +G    G  S    +++S  +     
Sbjct: 119 LFDAVYASDRATFHTPFSHLGQSPEGCSSYTFPKIMSPAKATEML 163

>d1hzda_ c.14.1.3 (A:) AUH protein {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: AUH protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 75.6 bits (184), Expect = 7e-17
 Identities = 42/152 (27%), Positives = 66/152 (43%), Gaps = 4/152 (2%)

Query: 79  EGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALR 138
            GI  + INR   +N+   + +K L +A +  + D  V  II+  +    FC+G D   R
Sbjct: 14  RGIVVLGINRAYGKNSLSKNLIKMLSKAVDALKSDKKVRTIIIRSEVPGIFCAGADLKER 73

Query: 139 TRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIF 198
            +   ++   F    +  +   I  LP P IA + G A+GGG  L + CD+ +AA +A  
Sbjct: 74  AKMSSSEVGPFVS-KIRAVINDIANLPVPTIAAIDGLALGGGLELALACDIRVAASSAKM 132

Query: 199 GQTGPKVGSFDAGYGSSIMSRLVSTVQQCLWW 230
           G    K+       G     RL   +   L  
Sbjct: 133 GLVETKLAII---PGGGGTQRLPRAIGMSLAK 161

>d1wdka4 c.14.1.3 (A:1-310) Fatty oxidation complex alpha subunit, N-terminal domain {Pseudomonas fragi [TaxId: 296]} Length = 310

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Fatty oxidation complex alpha subunit, N-terminal domain
species: Pseudomonas fragi [TaxId: 296]

 Score = 71.3 bits (173), Expect = 4e-15
 Identities = 34/164 (20%), Positives = 63/164 (38%), Gaps = 2/164 (1%)

Query: 77  VGEGIAKITIN-RPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQ 135
           +  GI ++  + + +  N F   T+ EL +A +  + D+SV  +I++             
Sbjct: 13  LESGIVELKFDLKGESVNKFNRLTLNELRQAVDAIKADASVKGVIVSSGKDVFIVGADIT 72

Query: 136 A-LRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAAD 194
             +            G L    +      L  P +A + G A+GGG  + +  D  + AD
Sbjct: 73  EFVENFKLPDAELIAGNLEANKIFSDFEDLNVPTVAAINGIALGGGLEMCLAADFRVMAD 132

Query: 195 NAIFGQTGPKVGSFDAGYGSSIMSRLVSTVQQCLWWGLKKHVKC 238
           +A  G    K+G +    G+  + RL+       W    K  + 
Sbjct: 133 SAKIGLPEVKLGIYPGFGGTVRLPRLIGVDNAVEWIASGKENRA 176

>d1ef8a_ c.14.1.3 (A:) Methylmalonyl CoA decarboxylase {Escherichia coli [TaxId: 562]} Length = 261

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Methylmalonyl CoA decarboxylase
species: Escherichia coli [TaxId: 562]

 Score = 65.6 bits (158), Expect = 2e-13
 Identities = 36/170 (21%), Positives = 61/170 (35%), Gaps = 4/170 (2%)

Query: 67  EFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGT 126
            +  +         +A I  N   + NA     + +L++A +D        +I+    G+
Sbjct: 2   SYQYVNVVTI--NKVAVIEFNYGRKLNALSKVFIDDLMQALSDLNRPEIRCIILRAPSGS 59

Query: 127 EAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMV 186
           + F +G D       G         L    +   I++ PKP+I+MV G   GG   + M 
Sbjct: 60  KVFSAGHDIHELPSGGRDPLSYDDPLR--QITRMIQKFPKPIISMVEGSVWGGAFEMIMS 117

Query: 187 CDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVSTVQQCLWWGLKKHV 236
            DL IAA  + F  T   +G      G   ++R                +
Sbjct: 118 SDLIIAASTSTFSMTPVNLGVPYNLVGIHNLTRDAGFHIVKELIFTASPI 167

>d1pjha_ c.14.1.3 (A:) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 266

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 64.7 bits (156), Expect = 5e-13
 Identities = 21/135 (15%), Positives = 37/135 (27%), Gaps = 11/135 (8%)

Query: 67  EFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGT 126
           +   I Y          I +  PD  NA        L      A  +  V   I+   G 
Sbjct: 3   QNEKISYRIE--GPFFIIHLINPDNLNALEGEDYIYLGELLELADRNRDVYFTIIQSSGR 60

Query: 127 EAFCSGGDQALRTRDGYADYENFGRL---------NVLDLQVQIRRLPKPVIAMVAGYAV 177
                   + +    G    +                + +     +  K +I  + G A+
Sbjct: 61  FFSSGADFKGIAKAQGDDTNKYPSETSKWVSNFVARNVYVTDAFIKHSKVLICCLNGPAI 120

Query: 178 GGGHVLHMVCDLTIA 192
           G    L  +CD+  +
Sbjct: 121 GLSAALVALCDIVYS 135

>d1szoa_ c.14.1.3 (A:) 6-oxo camphor hydrolase {Rhodococcus erythropolis [TaxId: 1833]} Length = 249

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: 6-oxo camphor hydrolase
species: Rhodococcus erythropolis [TaxId: 1833]

 Score = 60.5 bits (145), Expect = 1e-11
 Identities = 27/169 (15%), Positives = 51/169 (30%), Gaps = 4/169 (2%)

Query: 62  DESGTEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIIL 121
            E   ++ +I  E+    G+  +T++   +   +      EL   F+D   D    V+IL
Sbjct: 6   QEYSQKYENIRLERD--GGVLLVTVHTEGKSLVWTSTAHDELAYCFHDIACDRENKVVIL 63

Query: 122 TGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGH 181
           TG G          +     G     +        L   +  +  PVIA V G       
Sbjct: 64  TGTGPSFCNEIDFTS--FNLGTPHDWDEIIFEGQRLLNNLLSIEVPVIAAVNGPVTNAPE 121

Query: 182 VLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVSTVQQCLWW 230
           +  M   +  A             G         +   ++ + +   + 
Sbjct: 122 IPVMSDIVLAAESATFQDGPHFPSGIVPGDGAHVVWPHVLGSNRGRYFL 170

>d1wz8a1 c.14.1.3 (A:2-264) Probable enoyl-CoA hydratase TTHA0218 {Thermus thermophilus [TaxId: 274]} Length = 263

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Probable enoyl-CoA hydratase TTHA0218
species: Thermus thermophilus [TaxId: 274]

 Score = 58.7 bits (140), Expect = 6e-11
 Identities = 27/121 (22%), Positives = 45/121 (37%), Gaps = 2/121 (1%)

Query: 67  EFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGT 126
            +  + +      G+ +IT  R ++ NA  P   + L R + D      V  ++L G+G 
Sbjct: 7   RYPGLAFAW-PRPGVLEITF-RGEKLNAMPPALHRGLARVWRDLEAVEGVRAVLLRGEGG 64

Query: 127 EAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMV 186
                G    +       +          DL +     P+PV+A V   AVG G  L + 
Sbjct: 65  VFSAGGSFGLIEEMRASHEALLRVFWEARDLVLGPLNFPRPVVAAVEKVAVGAGLALALA 124

Query: 187 C 187
            
Sbjct: 125 A 125

>d2fw2a1 c.14.1.3 (A:3-260) Chromodomain protein CDY2A {Human (Homo sapiens) [TaxId: 9606]} Length = 258

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Chromodomain protein CDY2A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.4 bits (139), Expect = 7e-11
 Identities = 35/165 (21%), Positives = 61/165 (36%), Gaps = 4/165 (2%)

Query: 68  FTDIIYEKAVGEGIAKITIN-RPDRRNAFRPHTVKELIRAFNDA-RDDSSVGVIILTGKG 125
           + DI+ +K   +G  +I ++ R   +NA     +KE++ A N A  DDS + +    G  
Sbjct: 1   YRDIVVKKE--DGFTQIVLSTRSTEKNALNTEVIKEMVNALNSAAADDSKLVLFSAAGSV 58

Query: 126 TEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHM 185
                  G      R+            + +      +  KP++  V G A+G G  +  
Sbjct: 59  FCCGLDFGYFVRHLRNDRNTASLEMVDTIKNFVNTFIQFKKPIVVSVNGPAIGLGASILP 118

Query: 186 VCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVSTVQQCLWW 230
           +CDL  A + A F       G    G  S    +++         
Sbjct: 119 LCDLVWANEKAWFQTPYTTFGQSPDGCSSITFPKMMGKASANEML 163

>d2a7ka1 c.14.1.3 (A:1-230) Carbapenem biosynthes protein CarB {Pectobacterium carotovorum [TaxId: 554]} Length = 230

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Carbapenem biosynthes protein CarB
species: Pectobacterium carotovorum [TaxId: 554]

 Score = 54.5 bits (129), Expect = 1e-09
 Identities = 11/46 (23%), Positives = 22/46 (47%), Gaps = 1/46 (2%)

Query: 71  IIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSV 116
           +++E+   + +  IT++ P++ N F       +  A   A  D SV
Sbjct: 1   MVFEE-NSDEVRVITLDHPNKHNPFSRTLETSVKDALARANADDSV 45

>d1sg4a1 c.14.1.3 (A:2-250) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Human (Homo sapiens), mitochondrial [TaxId: 9606]} Length = 249

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase)
species: Human (Homo sapiens), mitochondrial [TaxId: 9606]

 Score = 52.5 bits (124), Expect = 7e-09
 Identities = 15/62 (24%), Positives = 26/62 (41%), Gaps = 1/62 (1%)

Query: 71  IIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFC 130
           ++ E   G G+A +    P   N+     + EL+ +     +D S   +ILT      F 
Sbjct: 4   VLVEPDAGAGVAVMKFKNPP-VNSLSLEFLTELVISLEKLENDKSFRGVILTSDRPGVFS 62

Query: 131 SG 132
           +G
Sbjct: 63  AG 64

>d1uyra1 c.14.1.4 (A:1482-1814) Acetyl-coenzyme A carboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 333

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Acetyl-coenzyme A carboxylase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.3 bits (86), Expect = 0.001
 Identities = 9/39 (23%), Positives = 13/39 (33%)

Query: 167 PVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKV 205
             I +V   +VG G  L  +    I  +      TG   
Sbjct: 242 FTITLVTCRSVGIGAYLVRLGQRAIQVEGQPIILTGAPA 280

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	240
d1mj3a_	260	Enoyl-CoA hydratase (crotonase) {Rat (Rattus norve	100.0
d1pjha_	266	Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA iso	100.0
d2a7ka1	230	Carbapenem biosynthes protein CarB {Pectobacterium	100.0
d2f6qa1	245	Peroxisomal 3,2-trans-enoyl-CoA isomerase {Human (	100.0
d1wdka4	310	Fatty oxidation complex alpha subunit, N-terminal	100.0
d1hzda_	266	AUH protein {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1sg4a1	249	Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA iso	100.0
d2fw2a1	258	Chromodomain protein CDY2A {Human (Homo sapiens) [	100.0
d1nzya_	269	4-Chlorobenzoyl-CoA dehalogenase {Pseudomonas sp.,	100.0
d1q52a_	297	Naphthoate synthase MenB {Mycobacterium tuberculos	100.0
d1wz8a1	263	Probable enoyl-CoA hydratase TTHA0218 {Thermus the	100.0
d1ef8a_	261	Methylmalonyl CoA decarboxylase {Escherichia coli	100.0
d1uiya_	253	Enoyl-CoA hydratase (crotonase) {Thermus thermophi	100.0
d1dcia_	275	Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA iso	100.0
d1szoa_	249	6-oxo camphor hydrolase {Rhodococcus erythropolis	100.0
d1on3a1	253	Methylmalonyl-CoA carboxyltransferase (transcarbox	97.09
d2f9yb1	263	Acetyl-coenzyme A carboxylase carboxyl transferase	96.63
d1xnya1	258	Propionyl-CoA carboxylase complex B subunit, PccB	96.62
d2a7sa1	258	Propionyl-CoA carboxylase complex B subunit, PccB	96.59
d1yg6a1	183	Clp protease, ClpP subunit {Escherichia coli [TaxI	96.46
d1pixa2	287	Glutaconyl-CoA decarboxylase A subunit {Acidaminoc	96.39
d1vrga1	251	Propionyl-CoA carboxylase complex B subunit, PccB	96.24
d2cbya1	179	Clp protease, ClpP subunit {Mycobacterium tubercul	95.86
d1uyra1	333	Acetyl-coenzyme A carboxylase {Baker's yeast (Sacc	94.97
d2f9ya1	316	Acetyl-coenzyme A carboxylase carboxyl transferase	94.96
d1y7oa1	192	Clp protease, ClpP subunit {Streptococcus pneumoni	94.66
d2f6ia1	190	Clp protease, ClpP subunit {Plasmodium falciparum	94.58
d2a7sa2	271	Propionyl-CoA carboxylase complex B subunit, PccB	94.52
d1tg6a1	193	Clp protease, ClpP subunit {Human (Homo sapiens),	94.23
d1vrga2	264	Propionyl-CoA carboxylase complex B subunit, PccB	94.16
d1xnya2	263	Propionyl-CoA carboxylase complex B subunit, PccB	93.8
d1on3a2	264	Methylmalonyl-CoA carboxyltransferase (transcarbox	93.2
d1pixa3	299	Glutaconyl-CoA decarboxylase A subunit {Acidaminoc	82.0
d1uyra2	404	Acetyl-coenzyme A carboxylase {Baker's yeast (Sacc	81.68

>d1mj3a_ c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Enoyl-CoA hydratase (crotonase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=8.1e-44  Score=304.50  Aligned_cols=168  Identities=32%  Similarity=0.457  Sum_probs=148.4

Q ss_pred             cceeEEEEEEe-CCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccc
Q 026342           67 EFTDIIYEKAV-GEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYAD  145 (240)
Q Consensus        67 ~~~~v~~~~~~-~~~v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~  145 (240)
                      +|+.|.+|+.. +++|++||||||+++|+||.+|+.+|.++|+.++.|+++++|||+|.| ++||+|+|++++...... 
T Consensus         2 ~~~~i~~e~~g~~~~I~~itlnrP~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g-~~F~aG~Dl~~~~~~~~~-   79 (260)
T d1mj3a_           2 NFQYIITEKKGKNSSVGLIQLNRPKALNALCNGLIEELNQALETFEEDPAVGAIVLTGGE-KAFAAGADIKEMQNRTFQ-   79 (260)
T ss_dssp             CCSSEEEEEESGGGCEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEECCS-SEEECCBCHHHHTTCCHH-
T ss_pred             CCeEEEEEEEcCCCCEEEEEEcCCCcCCCCCHHHHHHHHHHHHHHHhCCCcceEEEeccc-ccccccchhhhhhccchh-
Confidence            57889999841 368999999999999999999999999999999999999999999998 899999999876542211 


Q ss_pred             hhhhhhhhHHHHHHHHHcCCCcEEEEECchhchhhHHHhhhcCEEEEeCCcEEecccccccccCCCchHHHHHhhcCHHH
Q 026342          146 YENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVSTVQ  225 (240)
Q Consensus       146 ~~~~~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~a~f~~pe~~~Gl~p~~g~~~~l~rlvG~~~  225 (240)
                       .. ....+.+++..+.++|||+||+|||+|+|||++|+++||||||+++++|++||+++|++|+++++++|++++|.++
T Consensus        80 -~~-~~~~~~~~~~~~~~~~kPvIaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~~~~~~l~~~ig~~~  157 (260)
T d1mj3a_          80 -DC-YSGKFLSHWDHITRIKKPVIAAVNGYALGGGCELAMMCDIIYAGEKAQFGQPEILLGTIPGAGGTQRLTRAVGKSL  157 (260)
T ss_dssp             -HH-HHC--CCGGGGGGGCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECGGGGGTCCCCSSTTTHHHHHHCHHH
T ss_pred             -hh-hHHHHHHHHHHhccCCCeEEEEEcCeEeHHHHHHHHHCCEEEEcCCCEEECchhccCcCCcccHHHHHHHHhCHHH
Confidence             11 1112345567889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCcccc
Q 026342          226 QCLWWGLKKHVKC  238 (240)
Q Consensus       226 a~ellltG~~i~A  238 (240)
                      |++|+++|++|+|
T Consensus       158 a~~l~l~g~~~~a  170 (260)
T d1mj3a_         158 AMEMVLTGDRISA  170 (260)
T ss_dssp             HHHHHHHCCCEEH
T ss_pred             HHHHHHcCcccCc
Confidence            9999999999986

>d1pjha_ c.14.1.3 (A:) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=5.2e-43  Score=301.09  Aligned_cols=169  Identities=18%  Similarity=0.153  Sum_probs=147.0

Q ss_pred             cceeEEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccch
Q 026342           67 EFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADY  146 (240)
Q Consensus        67 ~~~~v~~~~~~~~~v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~  146 (240)
                      +++.|.++.  +++|++|+||||+++|+||.+|+.+|.++|+++++|+++++|||+|.| ++||+|+||+++........
T Consensus         3 ~~e~i~~~~--~~~v~~Itlnrp~~~Na~~~~~~~el~~al~~~~~d~~v~~vVl~g~g-~~FsaG~Dl~~~~~~~~~~~   79 (266)
T d1pjha_           3 QNEKISYRI--EGPFFIIHLINPDNLNALEGEDYIYLGELLELADRNRDVYFTIIQSSG-RFFSSGADFKGIAKAQGDDT   79 (266)
T ss_dssp             CBTTEEEEE--ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEECBT-TBSBCCBCHHHHHC------
T ss_pred             CCCeEEEEE--ECCEEEEEEcCCCcCCCCCHHHHHHHHHHHHHHHhCCCceEEEEeccc-cccccchhHHHHHhcccccc
Confidence            456799988  799999999999999999999999999999999999999999999999 89999999987654322111


Q ss_pred             -------hhhh---hhhHHHHHHHHHcCCCcEEEEECchhchhhHHHhhhcCEEEEeC-CcEEecccccccccCCCchHH
Q 026342          147 -------ENFG---RLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAAD-NAIFGQTGPKVGSFDAGYGSS  215 (240)
Q Consensus       147 -------~~~~---~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~lal~~D~rias~-~a~f~~pe~~~Gl~p~~g~~~  215 (240)
                             ....   ......++..+.++|||+||+|||+|+|||++|+++||+|||++ .++|++||+++|++|++|+++
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kP~IAav~G~a~GgG~~lal~~D~~ia~~~~~~~~~pe~~lGl~p~~g~~~  159 (266)
T d1pjha_          80 NKYPSETSKWVSNFVARNVYVTDAFIKHSKVLICCLNGPAIGLSAALVALCDIVYSINDKVYLLYPFANLGLITEGGTTV  159 (266)
T ss_dssp             -CCSSHHHHHHHHTHHHHHHHHHHHHHCCSEEEEEECSCEEHHHHHHHHHSSEEEESSTTCEEECCHHHHTCCCCTTHHH
T ss_pred             ccccchhhHHHHHHHHHHHHHHHHHHhcchhhhhhhhcccccccccchhccchhhhhhcccccccccccccccccccccc
Confidence                   0000   11245677889999999999999999999999999999999974 589999999999999999999


Q ss_pred             HHHhhcCHHHHHHHHhcCCcccc
Q 026342          216 IMSRLVSTVQQCLWWGLKKHVKC  238 (240)
Q Consensus       216 ~l~rlvG~~~a~ellltG~~i~A  238 (240)
                      +|+|++|.++|++|+++|+.|+|
T Consensus       160 ~l~r~~g~~~a~~llltg~~~~a  182 (266)
T d1pjha_         160 SLPLKFGTNTTYECLMFNKPFKY  182 (266)
T ss_dssp             HHHHHHCHHHHHHHHHTTCCEEH
T ss_pred             ccccccccchhhhhhccCCcCCH
Confidence            99999999999999999999976

>d2a7ka1 c.14.1.3 (A:1-230) Carbapenem biosynthes protein CarB {Pectobacterium carotovorum [TaxId: 554]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Carbapenem biosynthes protein CarB
species: Pectobacterium carotovorum [TaxId: 554]

Probab=100.00  E-value=1.2e-42  Score=293.26  Aligned_cols=165  Identities=22%  Similarity=0.281  Sum_probs=144.2

Q ss_pred             EEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccchhhhhh
Q 026342           72 IYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGR  151 (240)
Q Consensus        72 ~~~~~~~~~v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~~~~~~  151 (240)
                      +++.+ +|+|++||||||+++|+||.+|+.+|.+++++++.|+++|+|||+|.|+++||+|+|++++.............
T Consensus         2 ~~~~~-~d~I~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~i~~vVl~~~g~~~F~aG~Dl~~~~~~~~~~~~~~~~   80 (230)
T d2a7ka1           2 VFEEN-SDEVRVITLDHPNKHNPFSRTLETSVKDALARANADDSVRAVVVYGGAERSFSAGGDFNEVKQLSRSEDIEEWI   80 (230)
T ss_dssp             EEEEE-ETTEEEEEECCSSTTCBCCHHHHHHHHHHHHHHHHCTTCCEEEEECCTTSCSBCBSCHHHHHTC-CHHHHHHHH
T ss_pred             EEEEe-cCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHhCCcccccceeccchhhhhhhcccccccccccccccccch
Confidence            34444 78999999999999999999999999999999999999999999998878999999999875433222111122


Q ss_pred             hhHHHHHHHHHcCCCcEEEEECchhchhhHHHhhhcCEEEEeCCcEEecccccccccCCCchHHHHHhhcCHHHHHHHHh
Q 026342          152 LNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVSTVQQCLWWG  231 (240)
Q Consensus       152 ~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~a~f~~pe~~~Gl~p~~g~~~~l~rlvG~~~a~elll  231 (240)
                      ..+.+++.++.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++ ++.+|++++|.++|++|++
T Consensus        81 ~~~~~~~~~i~~~~kpvIaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~G~~p~~-g~~~l~~~iG~~~a~~l~l  159 (230)
T d2a7ka1          81 DRVIDLYQAVLNVNKPTIAAVDGYAIGMGFQFALMFDQRLMASTANFVMPELKHGIGCSV-GAAILGFTHGFSTMQEIIY  159 (230)
T ss_dssp             HHHHHHHHHHHTCCSCEEEEECSEEETHHHHHHTTSSEEEEETTCEEECCGGGGTCCCHH-HHHHHHHHHCHHHHHHHHH
T ss_pred             hhhhhhhhcccchhcceeeecccccccccccchhccchhhccccchhhhccccccccccc-ccccccccccccccccccc
Confidence            246678889999999999999999999999999999999999999999999999998765 5678999999999999999


Q ss_pred             cCCcccc
Q 026342          232 LKKHVKC  238 (240)
Q Consensus       232 tG~~i~A  238 (240)
                      +|+.|+|
T Consensus       160 ~g~~~~a  166 (230)
T d2a7ka1         160 QCQSLDA  166 (230)
T ss_dssp             HCCCBCH
T ss_pred             ccccchH
Confidence            9999986

>d2f6qa1 c.14.1.3 (A:108-352) Peroxisomal 3,2-trans-enoyl-CoA isomerase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Peroxisomal 3,2-trans-enoyl-CoA isomerase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.4e-42  Score=291.69  Aligned_cols=167  Identities=28%  Similarity=0.398  Sum_probs=145.8

Q ss_pred             ceeEEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccchh
Q 026342           68 FTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYE  147 (240)
Q Consensus        68 ~~~v~~~~~~~~~v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~~  147 (240)
                      |++|.+++  +++|++|+||||+++|+||.+|+.+|.++++.++.|+.+ +||++|.| ++||+|+|++++.........
T Consensus         2 ~~~i~~~~--~~gi~~Itlnrp~~~Nals~~~~~~l~~~l~~~~~d~~v-~vvl~g~g-~~F~aG~Dl~~~~~~~~~~~~   77 (245)
T d2f6qa1           2 FETLVVTS--EDGITKIMFNRPKKKNAINTEMYHEIMRALKAASKDDSI-ITVLTGNG-DYYSSGNDLTNFTDIPPGGVE   77 (245)
T ss_dssp             CSSEEEEE--ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHSSCS-EEEEEEST-TCSBCCBCC----CCCTTHHH
T ss_pred             cceEEEEE--ECCEEEEEEcCCCcCCCCCHHHHHHHHHHHHHHhcCCce-EEeecCCC-ccccCCccchhhhcccccccc
Confidence            67899998  799999999999999999999999999999999999887 89999998 799999999987654332221


Q ss_pred             hhh---hhhHHHHHHHHHcCCCcEEEEECchhchhhHHHhhhcCEEEEeCCcEEecccccccccCCCchHHHHHhhcCHH
Q 026342          148 NFG---RLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVSTV  224 (240)
Q Consensus       148 ~~~---~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~a~f~~pe~~~Gl~p~~g~~~~l~rlvG~~  224 (240)
                      ...   ...+.+++.+|.++|||+||+|||+|+|||++|+++|||||++++++|++||+++|++|++|++++|++++|..
T Consensus        78 ~~~~~~~~~~~~~~~~i~~~~kpvIa~v~G~a~GgG~~la~~~D~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~~~~g~~  157 (245)
T d2f6qa1          78 EKAKNNAVLLREFVGCFIDFPKPLIAVVNGPAVGISVTLLGLFDAVYASDRATFHTPFSHLGQSPEGCSSYTFPKIMSPA  157 (245)
T ss_dssp             HHHHHHHHHHHHHHHHHHSCCSCEEEEECSCEETHHHHGGGGCSEEEEETTCEEECCTGGGTCCCCTTHHHHHHHHHCHH
T ss_pred             cccchhhhHHHHHHhhhhhcCCceEEEECCccccccccchhhhhhhhhhccCeEecccccCCCCccccchhhcccccccc
Confidence            111   11245778899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCcccc
Q 026342          225 QQCLWWGLKKHVKC  238 (240)
Q Consensus       225 ~a~ellltG~~i~A  238 (240)
                      +|++|+++|+.++|
T Consensus       158 ~a~~l~l~g~~~~a  171 (245)
T d2f6qa1         158 KATEMLIFGKKLTA  171 (245)
T ss_dssp             HHHHHHTTCCCEEH
T ss_pred             hhhhhccccccccc
Confidence            99999999999986

>d1wdka4 c.14.1.3 (A:1-310) Fatty oxidation complex alpha subunit, N-terminal domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Fatty oxidation complex alpha subunit, N-terminal domain
species: Pseudomonas fragi [TaxId: 296]

Probab=100.00  E-value=1.3e-41  Score=298.73  Aligned_cols=169  Identities=22%  Similarity=0.346  Sum_probs=149.0

Q ss_pred             ceeEEEEEEeCCCEEEEEEc-CCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccch
Q 026342           68 FTDIIYEKAVGEGIAKITIN-RPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADY  146 (240)
Q Consensus        68 ~~~v~~~~~~~~~v~~Itln-rp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~  146 (240)
                      ++.|.+++. ++||++|+|| ||++.|+||.+|+.+|.++++.++.|+++++|||+|.| ++||+|+|++++........
T Consensus         5 ~~~i~~~~~-~~gva~i~ln~~p~~~Nal~~~~~~el~~al~~~~~d~~v~~vVl~g~g-~~F~aG~Dl~~~~~~~~~~~   82 (310)
T d1wdka4           5 GKAITVTAL-ESGIVELKFDLKGESVNKFNRLTLNELRQAVDAIKADASVKGVIVSSGK-DVFIVGADITEFVENFKLPD   82 (310)
T ss_dssp             CSSEEEEEC-GGGEEEEEECCTTSSSCBCCHHHHHHHHHHHHHHHHCTTCCEEEEEESS-SSSBBCCCHHHHHHHTTSCH
T ss_pred             CceEEEEEe-cCCEEEEEECCCCcccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCC-CCccchhhhhhhhhcccccc
Confidence            346777764 7899999998 89999999999999999999999999999999999998 79999999998654322211


Q ss_pred             hhh--hhhhHHHHHHHHHcCCCcEEEEECchhchhhHHHhhhcCEEEEeCCcEEecccccccccCCCchHHHHHhhcCHH
Q 026342          147 ENF--GRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVSTV  224 (240)
Q Consensus       147 ~~~--~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~a~f~~pe~~~Gl~p~~g~~~~l~rlvG~~  224 (240)
                      ...  ....+.+++..|.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+|++|..
T Consensus        83 ~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~elal~cD~ria~~~a~f~~pe~~~Gl~P~~gg~~~L~r~iG~~  162 (310)
T d1wdka4          83 AELIAGNLEANKIFSDFEDLNVPTVAAINGIALGGGLEMCLAADFRVMADSAKIGLPEVKLGIYPGFGGTVRLPRLIGVD  162 (310)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCSSCEEEEECSCEETHHHHHHHTSSEEEEETTCEEECGGGGGTCCCCSSHHHHHHHHHCHH
T ss_pred             hhhhhhhhHHHHHHHHhhcCCccceeeccccccccccccchhhhhhhccccceecccccccCCCccccchhhhhhhhhhh
Confidence            111  111356788899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCcccc
Q 026342          225 QQCLWWGLKKHVKC  238 (240)
Q Consensus       225 ~a~ellltG~~i~A  238 (240)
                      ++++|+++|+.|+|
T Consensus       163 ~a~~lll~g~~~~a  176 (310)
T d1wdka4         163 NAVEWIASGKENRA  176 (310)
T ss_dssp             HHHHHHHHCCCEEH
T ss_pred             hhhhhhccccccCH
Confidence            99999999999976

>d1hzda_ c.14.1.3 (A:) AUH protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: AUH protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.6e-42  Score=295.34  Aligned_cols=160  Identities=26%  Similarity=0.410  Sum_probs=145.4

Q ss_pred             CCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccchhhhhhhhHHHH
Q 026342           78 GEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDL  157 (240)
Q Consensus        78 ~~~v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l  157 (240)
                      ++||++|+||||+++|+||.+|+.+|.++++.++.|+++++|||+|.|+++||+|.|++.+............. .+.++
T Consensus        13 ~~gI~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~f~~g~d~~~~~~~~~~~~~~~~~-~~~~~   91 (266)
T d1hzda_          13 NRGIVVLGINRAYGKNSLSKNLIKMLSKAVDALKSDKKVRTIIIRSEVPGIFCAGADLKERAKMSSSEVGPFVS-KIRAV   91 (266)
T ss_dssp             GTTEEEEEECCGGGTTCBCTTHHHHHHHHHHHHHHCSSCSEEEEEESBTEEEECCBCHHHHTTSCHHHHHHHHH-HHHHH
T ss_pred             cCCEEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHhCCCcceEEEeccccccccccccccccccccchhhhhhhh-HHHHH
Confidence            57899999999999999999999999999999999999999999999977999999998775543322222222 46678


Q ss_pred             HHHHHcCCCcEEEEECchhchhhHHHhhhcCEEEEeCCcEEecccccccccCCCchHHHHHhhcCHHHHHHHHhcCCccc
Q 026342          158 QVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVSTVQQCLWWGLKKHVK  237 (240)
Q Consensus       158 ~~~i~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~a~f~~pe~~~Gl~p~~g~~~~l~rlvG~~~a~ellltG~~i~  237 (240)
                      +..+.++|||+||+|||+|+|||++|+++||||||+++++|++||+++|++|+++++++|++++|.++|++|+++|+.|+
T Consensus        92 ~~~i~~~~kpvIaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~~~ig~~~a~~l~ltg~~~~  171 (266)
T d1hzda_          92 INDIANLPVPTIAAIDGLALGGGLELALACDIRVAASSAKMGLVETKLAIIPGGGGTQRLPRAIGMSLAKELIFSARVLD  171 (266)
T ss_dssp             HHHHHTCSSCEEEEESEEEETHHHHHHHHSSEEEEETTCEEECCGGGGTCCCCSSHHHHHHHHHCHHHHHHHHHHTCEEE
T ss_pred             HHHHhcCCcccccccccccccccceeccccceeeecCCcEEeecccceeecCCccceeeehhhhHHHHHHhhhccCCccC
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             c
Q 026342          238 C  238 (240)
Q Consensus       238 A  238 (240)
                      |
T Consensus       172 a  172 (266)
T d1hzda_         172 G  172 (266)
T ss_dssp             H
T ss_pred             H
Confidence            6

>d1sg4a1 c.14.1.3 (A:2-250) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Human (Homo sapiens), mitochondrial [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase)
species: Human (Homo sapiens), mitochondrial [TaxId: 9606]

Probab=100.00  E-value=1.1e-41  Score=290.39  Aligned_cols=168  Identities=19%  Similarity=0.300  Sum_probs=149.3

Q ss_pred             eeEEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccchhh
Q 026342           69 TDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYEN  148 (240)
Q Consensus        69 ~~v~~~~~~~~~v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~~~  148 (240)
                      ++|.++.+.++||++|+||||+ .|+||.+|+.+|.++++.+++|+++++|||+|.|+++||+|+|++++..........
T Consensus         2 ~~ilve~~~~~gIa~itln~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~~Fs~G~Dl~~~~~~~~~~~~~   80 (249)
T d1sg4a1           2 QRVLVEPDAGAGVAVMKFKNPP-VNSLSLEFLTELVISLEKLENDKSFRGVILTSDRPGVFSAGLDLTEMCGRSPAHYAG   80 (249)
T ss_dssp             CSEEEEEETTTTEEEEEECCTT-TTEECHHHHHHHHHHHHHHHHCTTCCEEEEEESSTEESCCEECGGGGSSCCHHHHHH
T ss_pred             CcEEEEEECCCCEEEEEECCCC-cCCCCHHHHHHHHHHHHHHHhCCCccEEEEEeccceeEecccccccccccccccccc
Confidence            4578888767899999999996 699999999999999999999999999999999866899999999875433322222


Q ss_pred             hhhhhHHHHHHHHHcCCCcEEEEECchhchhhHHHhhhcCEEEEeCCcEE--ecccccccccCCCchHHHHHhhcCHHHH
Q 026342          149 FGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIF--GQTGPKVGSFDAGYGSSIMSRLVSTVQQ  226 (240)
Q Consensus       149 ~~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~a~f--~~pe~~~Gl~p~~g~~~~l~rlvG~~~a  226 (240)
                      +.. .+.+++.++.++|||+||+|||+|+|||++|+++||+||++++++|  ++||+++|++|+++++++|++++|+.++
T Consensus        81 ~~~-~~~~~~~~l~~~~kpvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~pe~~~Gl~p~~g~~~~l~~~iG~~~a  159 (249)
T d1sg4a1          81 YWK-AVQELWLRLYQSNLVLVSAINGACPAGGCLVALTCDYRILADNPRYCIGLNETQLGIIAPFWLKDTLENTIGHRAA  159 (249)
T ss_dssp             HHH-HHHHHHHHHHTCSSEEEEEECEEBCHHHHHHHTTSSEEEEECCTTCCBSCCGGGGTCCCCHHHHHHHHHHHCHHHH
T ss_pred             cch-hhHHHHHhhhcCccccchhhcccccccccccccccccceeeccccccccccccccccccccccccccccccccccc
Confidence            222 4667888999999999999999999999999999999999999976  7899999999999999999999999999


Q ss_pred             HHHHhcCCcccc
Q 026342          227 CLWWGLKKHVKC  238 (240)
Q Consensus       227 ~ellltG~~i~A  238 (240)
                      ++|+++|++|+|
T Consensus       160 ~~lll~g~~~~a  171 (249)
T d1sg4a1         160 ERALQLGLLFPP  171 (249)
T ss_dssp             HHHHHHTCCBCH
T ss_pred             cccccccccccH
Confidence            999999999986

>d2fw2a1 c.14.1.3 (A:3-260) Chromodomain protein CDY2A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Chromodomain protein CDY2A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.8e-41  Score=290.43  Aligned_cols=167  Identities=22%  Similarity=0.374  Sum_probs=147.0

Q ss_pred             ceeEEEEEEeCCCEEEEEEc-CCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccch
Q 026342           68 FTDIIYEKAVGEGIAKITIN-RPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADY  146 (240)
Q Consensus        68 ~~~v~~~~~~~~~v~~Itln-rp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~  146 (240)
                      |++|.+++  +++|++|+|| ||+++|+||.+|+.+|.++|+.++.|+ +++|||+|.| ++||+|+|++++........
T Consensus         1 y~~i~v~~--~~gi~~i~l~~rp~~~Nals~~~~~el~~al~~~~~d~-~~~vvl~g~g-~~FsaG~Dl~~~~~~~~~~~   76 (258)
T d2fw2a1           1 YRDIVVKK--EDGFTQIVLSTRSTEKNALNTEVIKEMVNALNSAAADD-SKLVLFSAAG-SVFCCGLDFGYFVRHLRNDR   76 (258)
T ss_dssp             CCSEEEEE--ETTEEEEEECCSSSSTTCBCHHHHHHHHHHHHHHHHSS-CSEEEEEECS-SCSBCCBCHHHHHHHHHHCH
T ss_pred             CceEEEEE--ECCEEEEEECCCCcccCCCCHHHHHHHHHHHHHHHcCC-CEEEEEecCc-cccccccccchhhhcccccc
Confidence            57899988  7999999997 799999999999999999999999874 6999999999 89999999987643211111


Q ss_pred             ---hhhhhhhHHHHHHHHHcCCCcEEEEECchhchhhHHHhhhcCEEEEeCCcEEecccccccccCCCchHHHHHhhcCH
Q 026342          147 ---ENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVST  223 (240)
Q Consensus       147 ---~~~~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~a~f~~pe~~~Gl~p~~g~~~~l~rlvG~  223 (240)
                         .......+.+++..+.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|+++++++|+|++|.
T Consensus        77 ~~~~~~~~~~~~~~~~~i~~~~kP~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~ig~  156 (258)
T d2fw2a1          77 NTASLEMVDTIKNFVNTFIQFKKPIVVSVNGPAIGLGASILPLCDLVWANEKAWFQTPYTTFGQSPDGCSSITFPKMMGK  156 (258)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCCSCEEEEECSCEETHHHHTGGGSSEEEEETTCEEECCHHHHTCCCCTTHHHHHHHHHCH
T ss_pred             cchhhHHHHHHHHHHHhhhccceeeeeecccccccccccccccccccceecccceeeccccccccccccccccchhhcCc
Confidence               11111135678889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCcccc
Q 026342          224 VQQCLWWGLKKHVKC  238 (240)
Q Consensus       224 ~~a~ellltG~~i~A  238 (240)
                      .++++|+++|+.|+|
T Consensus       157 ~~a~~l~l~g~~~~a  171 (258)
T d2fw2a1         157 ASANEMLIAGRKLTA  171 (258)
T ss_dssp             HHHHHHHTTCCEEEH
T ss_pred             cccchhhccCccccc
Confidence            999999999999986

>d1nzya_ c.14.1.3 (A:) 4-Chlorobenzoyl-CoA dehalogenase {Pseudomonas sp., strain CBS-3 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: 4-Chlorobenzoyl-CoA dehalogenase
species: Pseudomonas sp., strain CBS-3 [TaxId: 306]

Probab=100.00  E-value=3.4e-41  Score=290.23  Aligned_cols=168  Identities=27%  Similarity=0.363  Sum_probs=150.1

Q ss_pred             ceeEEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccchh
Q 026342           68 FTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYE  147 (240)
Q Consensus        68 ~~~v~~~~~~~~~v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~~  147 (240)
                      |+.|.++.  ++||++|+||||+++|+||.+|+.+|.++++.+++|+++++|||+|.| +.||+|+|++++.........
T Consensus         2 y~~i~~~i--~dgVa~Itlnrp~~~Nal~~~~~~el~~~l~~~~~d~~i~~vvltg~g-~~F~aG~Dl~~~~~~~~~~~~   78 (269)
T d1nzya_           2 YEAIGHRV--EDGVAEITIKLPRHRNALSVKAMQEVTDALNRAEEDDSVGAVMITGAE-DAFCAGFYLREIPLDKGVAGV   78 (269)
T ss_dssp             CSSEEEEE--ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEEST-TCSBCCBCGGGSCSSSHHHHH
T ss_pred             CCceEEEE--ECCEEEEEEcCCCcCCCCCHHHHHHHHHHHHHHHhCCCceEEEEeCCc-ccccchhhHHHHhhcccccch
Confidence            66788888  799999999999999999999999999999999999999999999999 899999999987543322111


Q ss_pred             --h--hhhhhHHHHHHHHHcCCCcEEEEECchhchhhHHHhhhcCEEEEeCCcEEecccccccccCCCchHHHHHhhcCH
Q 026342          148 --N--FGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVST  223 (240)
Q Consensus       148 --~--~~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~a~f~~pe~~~Gl~p~~g~~~~l~rlvG~  223 (240)
                        .  .....+.+++.++.++|||+||+|||+|+|||++|+++|||||++++++|++||.++|++|++++++++++++|.
T Consensus        79 ~~~~~~~~~~~~~~~~~i~~~~kPvIaav~G~a~GgG~~lal~~D~ria~~~a~~~~~~~~~g~~~~~g~~~~l~~~ig~  158 (269)
T d1nzya_          79 RDHFRIAALWWHQMIHKIIRVKRPVLAAINGVAAGGGLGISLASDMAICADSAKFVCAWHTIGIGNDTATSYSLARIVGM  158 (269)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCHHHHTCCCCTTHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHhhcchhehhhhhhcCCCceeeeecccHhhhhhhhhhcccccccccccccccccccccccCh
Confidence              1  111134578889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCcccc
Q 026342          224 VQQCLWWGLKKHVKC  238 (240)
Q Consensus       224 ~~a~ellltG~~i~A  238 (240)
                      .+|++++++|+.|+|
T Consensus       159 ~~a~~l~ltg~~i~a  173 (269)
T d1nzya_         159 RRAMELMLTNRTLYP  173 (269)
T ss_dssp             HHHHHHHHHCCCBCH
T ss_pred             hhhhhccccccccch
Confidence            999999999999986

>d1q52a_ c.14.1.3 (A:) Naphthoate synthase MenB {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Naphthoate synthase MenB
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=100.00  E-value=5.3e-41  Score=292.86  Aligned_cols=184  Identities=46%  Similarity=0.797  Sum_probs=149.5

Q ss_pred             CcccceeeccCCCCcceeEEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCC------
Q 026342           53 HDVVWRIACDESGTEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGT------  126 (240)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~------  126 (240)
                      .|..|+..  +.-+++++|.|++++++||++||||||+++|+||.+|+.+|.++|+++++|+++|+|||+|.|+      
T Consensus         4 ~~~~~~~~--~~~~~~~~i~~~~~~~~gi~~ItlnRP~~~NAl~~~m~~eL~~~l~~~~~d~~vr~vVltg~~~~f~~gG   81 (297)
T d1q52a_           4 DAKAWRLV--DGFDDLTDITYHRHVDDATVRVAFNRPEVRNAFRPHTVDELYRVLDHARMSPDVGVVLLTGNGPSPKDGG   81 (297)
T ss_dssp             CGGGEEEC--TTCTTCSSEEEEEESSSSEEEEEECCGGGTTCCCHHHHHHHHHHHHHHHHCTTCCEEEEEECCCCTTTCC
T ss_pred             CHHHCccc--CCcCCCcceEEEEEccCCEEEEEECCCCcCCCCCHHHHHHHHHHHHHHHhCCCccEEEEecCCCcccchh
Confidence            46778755  3467889999998778999999999999999999999999999999999999999999999853      


Q ss_pred             CCcccCCCccccccCCccc-------h---hhhhhhhHHHHHHHHHcCCCcEEEEECchhchhhHHHhhhcCEEEEeCC-
Q 026342          127 EAFCSGGDQALRTRDGYAD-------Y---ENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADN-  195 (240)
Q Consensus       127 ~~FcaG~Dl~~~~~~~~~~-------~---~~~~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~-  195 (240)
                      +.||+|.|++.........       .   .......+.++...|.++||||||+|||+|+|||++|+++||+||++++ 
T Consensus        82 ~~f~ag~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIaav~G~a~GGG~~lal~~D~~ia~~~~  161 (297)
T d1q52a_          82 WAFCSGGDQRIRGRSGYQYASGDTADTVDVARAGRLHILEVQRLIRFMPKVVICLVNGWAAGGGHSLHVVCDLTLASREY  161 (297)
T ss_dssp             CEEECCC-----------------------------CHHHHHHHHHHSSSEEEEEECSEEETHHHHHHHHSSEEEEETTT
T ss_pred             hhhhhcchhhhhcccccccccccccchhhhHHHHHHHHHHHHHHHHhcCCeEEEEEcceeeeccchhhhhhhcccccccc
Confidence            4566667776443221110       0   0111113557788999999999999999999999999999999999876 


Q ss_pred             cEEecccccccccCCCchHHHHHhhcCHHHHHHHHhcCCcccc
Q 026342          196 AIFGQTGPKVGSFDAGYGSSIMSRLVSTVQQCLWWGLKKHVKC  238 (240)
Q Consensus       196 a~f~~pe~~~Gl~p~~g~~~~l~rlvG~~~a~ellltG~~i~A  238 (240)
                      ++|++||+++|++|+++++++|+|++|.++|++++++|+.|+|
T Consensus       162 ~~f~~pe~~~Gl~p~~~~~~~L~r~iG~~~a~~llltg~~~~a  204 (297)
T d1q52a_         162 ARFKQTDADVGSFDGGYGSAYLARQVGQKFAREIFFLGRTYTA  204 (297)
T ss_dssp             CEEECCGGGGTCCCCSTTTHHHHHHHCHHHHHHHHHHCCEECH
T ss_pred             ccceeeeeccccccccccccccccccCccceeeccccccccch
Confidence            5799999999999999899999999999999999999999986

>d1wz8a1 c.14.1.3 (A:2-264) Probable enoyl-CoA hydratase TTHA0218 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Probable enoyl-CoA hydratase TTHA0218
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=1.1e-41  Score=292.65  Aligned_cols=168  Identities=21%  Similarity=0.316  Sum_probs=149.5

Q ss_pred             cceeEEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCcc--
Q 026342           67 EFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYA--  144 (240)
Q Consensus        67 ~~~~v~~~~~~~~~v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~--  144 (240)
                      .|+.+.++.. ++||++|+| ||+++|+||.+|+.+|.+++++++.|+++|+|||+|.| ++||+|+|++++......  
T Consensus         7 ~~~~i~~~~~-~~gV~~itl-rp~~~Nal~~~m~~el~~~~~~~~~d~~vr~vvl~g~g-~~FsaG~Dl~~~~~~~~~~~   83 (263)
T d1wz8a1           7 RYPGLAFAWP-RPGVLEITF-RGEKLNAMPPALHRGLARVWRDLEAVEGVRAVLLRGEG-GVFSAGGSFGLIEEMRASHE   83 (263)
T ss_dssp             HCTTEEEEEE-ETTEEEEEE-CCSGGGCBCHHHHHHHHHHHHHHTTCTTCSEEEEEEGG-GCCBCCBCHHHHHHHHHCHH
T ss_pred             CCCeEEEEEc-CCCEEEEEE-CCCCCCCCCHHHHHHHHHHHHHHhhCCCCeEEEEeccc-ccccccchhhhhhhhccccc
Confidence            4677888875 688999999 89999999999999999999999999999999999999 899999999876432111  


Q ss_pred             chhhhhhhhHHHHHHHHHcCCCcEEEEECchhchhhHHHhhhcCEEEEeCCcEEecccccccccCCCchHHHHHhhcCHH
Q 026342          145 DYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVSTV  224 (240)
Q Consensus       145 ~~~~~~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~a~f~~pe~~~Gl~p~~g~~~~l~rlvG~~  224 (240)
                      ....... ...+++..+.++|||+||+|||+|+|||++|+++||||||+++++|++||+++|++|++++++++++++|..
T Consensus        84 ~~~~~~~-~~~~~~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~~~~~~l~~~~G~~  162 (263)
T d1wz8a1          84 ALLRVFW-EARDLVLGPLNFPRPVVAAVEKVAVGAGLALALAADIAVVGKGTRLLDGHLRLGVAAGDHAVLLWPLLVGMA  162 (263)
T ss_dssp             HHHHHHH-HHHHHHHHHHHSSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCHHHHTSCCTTTHHHHTHHHHCHH
T ss_pred             ccccchh-hhhHHHHHhhhhhcceeeeccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            1111112 356788899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCcccc
Q 026342          225 QQCLWWGLKKHVKC  238 (240)
Q Consensus       225 ~a~ellltG~~i~A  238 (240)
                      +|++|+++|+.|+|
T Consensus       163 ~a~~l~l~g~~i~a  176 (263)
T d1wz8a1         163 KAKYHLLLNEPLTG  176 (263)
T ss_dssp             HHHHHHHHTCCEEH
T ss_pred             hhhhhcccccccch
Confidence            99999999999986

>d1ef8a_ c.14.1.3 (A:) Methylmalonyl CoA decarboxylase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Methylmalonyl CoA decarboxylase
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1.3e-41  Score=291.72  Aligned_cols=167  Identities=22%  Similarity=0.281  Sum_probs=146.0

Q ss_pred             cceeEEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeC-CCCCcccCCCccccccCCccc
Q 026342           67 EFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGK-GTEAFCSGGDQALRTRDGYAD  145 (240)
Q Consensus        67 ~~~~v~~~~~~~~~v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~-g~~~FcaG~Dl~~~~~~~~~~  145 (240)
                      +|++|.++.  +++|++|+||||+++|+||.+|+.+|.++|+++++ +++++|||+|. |+++||+|+||+++.......
T Consensus         2 ~~~~i~~~~--~~~v~~Itlnrp~~~Nal~~~~~~~l~~al~~~~~-~~~~~vVl~g~~g~~~F~aG~Dl~~~~~~~~~~   78 (261)
T d1ef8a_           2 SYQYVNVVT--INKVAVIEFNYGRKLNALSKVFIDDLMQALSDLNR-PEIRCIILRAPSGSKVFSAGHDIHELPSGGRDP   78 (261)
T ss_dssp             CCSSEEEEE--ETTEEEEEECCGGGTTCCCHHHHHHHHHHHHHTCS-TTCCEEEEECCTTCSEEECCSCSTTC-----CT
T ss_pred             CCCEEEEEE--ECCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhC-CCCEEEEEeccccchhhcccccccccccCCccc
Confidence            467899988  79999999999999999999999999999999984 57899999985 448999999999875433222


Q ss_pred             hhhhhhhhHHHHHHHHHcCCCcEEEEECchhchhhHHHhhhcCEEEEeCCcEEecccccccccCCCchHHHHHhhcCHHH
Q 026342          146 YENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVSTVQ  225 (240)
Q Consensus       146 ~~~~~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~a~f~~pe~~~Gl~p~~g~~~~l~rlvG~~~  225 (240)
                      . .+. ..+.+++..+.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|+++++++++|++|..+
T Consensus        79 ~-~~~-~~~~~~~~~i~~~~kPvIAav~G~a~GgG~~lal~cD~ria~~~a~~~~pe~~~Gl~~~~~~~~~l~r~~g~~~  156 (261)
T d1ef8a_          79 L-SYD-DPLRQITRMIQKFPKPIISMVEGSVWGGAFEMIMSSDLIIAASTSTFSMTPVNLGVPYNLVGIHNLTRDAGFHI  156 (261)
T ss_dssp             T-CTT-SHHHHHHHHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCHHHHTCCCCHHHHHTTSSSSCHHH
T ss_pred             c-ccc-cchhhhHHHHHhCchhhhhcccccccchhhhhhhhhhhhhhhHhHHHhhhhcccccccccccccccccccCccc
Confidence            1 111 13567889999999999999999999999999999999999999999999999999999989999999999999


Q ss_pred             HHHHHhcCCcccc
Q 026342          226 QCLWWGLKKHVKC  238 (240)
Q Consensus       226 a~ellltG~~i~A  238 (240)
                      +++++++|+.|+|
T Consensus       157 a~~~~l~g~~~~a  169 (261)
T d1ef8a_         157 VKELIFTASPITA  169 (261)
T ss_dssp             HHHHHHHCCCEEH
T ss_pred             cccccccCceEcH
Confidence            9999999999976

>d1uiya_ c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Enoyl-CoA hydratase (crotonase)
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=6.7e-41  Score=285.22  Aligned_cols=159  Identities=31%  Similarity=0.458  Sum_probs=139.8

Q ss_pred             CCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccchhh--hhhhhHH
Q 026342           78 GEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYEN--FGRLNVL  155 (240)
Q Consensus        78 ~~~v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~~~--~~~~~~~  155 (240)
                      +++|++||||||+++|+||.+|+.+|.++++.++.|+++++|||+|.| +.||+|+|++.+..........  .......
T Consensus         6 ~G~va~Itlnrp~~~Nal~~~~~~el~~~l~~~~~d~~v~~vvl~g~g-~~f~aG~dl~~~~~~~~~~~~~~~~~~~~~~   84 (253)
T d1uiya_           6 KGHVAVVFLNDPERRNPLSPEMALSLLQALDDLEADPGVRAVVLTGRG-KAFSAGADLAFLERVTELGAEENYRHSLSLM   84 (253)
T ss_dssp             CSSEEEEEECCGGGTCCCCHHHHHHHHHHHHHHHHCTTCCEEEEEESS-SCSBCCCCHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred             eCCEEEEEEcCCCcCCCCCHHHHHHHHHHHHHHHhCCCceEEEEeccc-ccccccchhHHhhhccccCcccccchhhhhh
Confidence            478999999999999999999999999999999999999999999999 7999999998654332222111  1112356


Q ss_pred             HHHHHHHcCCCcEEEEECchhchhhHHHhhhcCEEEEeCCcEEecccccccccCCCchHHHHHhhcCHHHHHHHHhcCCc
Q 026342          156 DLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVSTVQQCLWWGLKKH  235 (240)
Q Consensus       156 ~l~~~i~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~a~f~~pe~~~Gl~p~~g~~~~l~rlvG~~~a~ellltG~~  235 (240)
                      .++..+.++|||+||+|||+|+|||++|+++|||||++++++|++||.++|++| ++++++|++++|..+|++|+++|+.
T Consensus        85 ~~~~~i~~~~kpvIaav~G~a~GgG~~lal~~D~ria~~~a~~~~~e~~~g~~~-~~~~~~l~~~~g~~~a~~l~l~g~~  163 (253)
T d1uiya_          85 RLFHRVYTYPKPTVAAVNGPAVAGGAGLALACDLVVMDEEARLGYTEVKIGFVA-ALVSVILVRAVGEKAAKDLLLTGRL  163 (253)
T ss_dssp             HHHHHHHHCSSCEEEEECSCEETHHHHHHHTSSEEEEETTCEEECCHHHHTCCC-HHHHHHHHHHSCHHHHHHHHHHCCE
T ss_pred             hhhhHHhcCCCCEEEEeCeEEehhhHHHHhhhhhhhhhhhhHHhhhhccccccc-ccchhhhhcccCHHHHHHHhhcCcC
Confidence            778899999999999999999999999999999999999999999999999776 4578899999999999999999999


Q ss_pred             ccc
Q 026342          236 VKC  238 (240)
Q Consensus       236 i~A  238 (240)
                      |+|
T Consensus       164 ~~a  166 (253)
T d1uiya_         164 VEA  166 (253)
T ss_dssp             EEH
T ss_pred             CCH
Confidence            986

>d1dcia_ c.14.1.3 (A:) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=1.1e-40  Score=287.35  Aligned_cols=169  Identities=23%  Similarity=0.335  Sum_probs=145.1

Q ss_pred             ceeEEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCcc---
Q 026342           68 FTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYA---  144 (240)
Q Consensus        68 ~~~v~~~~~~~~~v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~---  144 (240)
                      |+++.+++. +++|++||||||+++|+||.+|+.+|.++|+.+++|+++++|||+|.| ++||+|+|+.++......   
T Consensus         2 y~~l~~~~~-~~~I~~itlnrP~~~Nals~~m~~el~~~l~~~~~d~~v~~vvltg~~-~~F~aG~dl~~~~~~~~~~~~   79 (275)
T d1dcia_           2 YESIQVTSA-QKHVLHVQLNRPEKRNAMNRAFWRELVECFQKISKDSDCRAVVVSGAG-KMFTSGIDLMDMASDILQPPG   79 (275)
T ss_dssp             CSSEEEEEE-ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHTCTTCCEEEEEEST-TCSBCCBCHHHHHHHHTSCCC
T ss_pred             CceEEEEEc-cCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEeccc-cccccCccHHHhhhccccccc
Confidence            667877654 789999999999999999999999999999999999999999999998 899999999865432111   


Q ss_pred             -chhh---h---hhhhHHHHHHHHHcCCCcEEEEECchhchhhHHHhhhcCEEEEeCCcEEecccccccccCCCchHHHH
Q 026342          145 -DYEN---F---GRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIM  217 (240)
Q Consensus       145 -~~~~---~---~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~a~f~~pe~~~Gl~p~~g~~~~l  217 (240)
                       ....   .   ....+..++..+.++|||+||+|||+|+|||++|+++|||||++++++|++||+++|++|++++++++
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIaav~G~a~GgG~~lal~~D~ria~~~a~f~~pe~~~Gl~p~~~~~~~~  159 (275)
T d1dcia_          80 DDVARIAWYLRDLISRYQKTFTVIEKCPKPVIAAIHGGCIGGGVDLISACDIRYCTQDAFFQVKEVDVGLAADVGTLQRL  159 (275)
T ss_dssp             SSHHHHHHHHHHHHHHHHHHHHHHHHSSSCEEEEECSEEETHHHHHHTTSSEEEEETTCEEECCGGGGTSCCCSSHHHHG
T ss_pred             ccccchhhhhccchhhhHHHHHHHHhcCCCEEEEEeeEeehhhHHHHhhcCchhhccCccccchhccccccccccccccc
Confidence             0000   0   01124567788999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhcCH-HHHHHHHhcCCcccc
Q 026342          218 SRLVST-VQQCLWWGLKKHVKC  238 (240)
Q Consensus       218 ~rlvG~-~~a~ellltG~~i~A  238 (240)
                      ++++|. .++++++++|+.++|
T Consensus       160 ~~~~g~~~~~~~ll~~g~~~~a  181 (275)
T d1dcia_         160 PKVIGNRSLVNELTFTARKMMA  181 (275)
T ss_dssp             GGTCSCHHHHHHHHHHCCEEEH
T ss_pred             ccccccccccccccccccccch
Confidence            999995 556789999999876

>d1szoa_ c.14.1.3 (A:) 6-oxo camphor hydrolase {Rhodococcus erythropolis [TaxId: 1833]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: 6-oxo camphor hydrolase
species: Rhodococcus erythropolis [TaxId: 1833]

Probab=100.00  E-value=3.9e-40  Score=280.85  Aligned_cols=169  Identities=19%  Similarity=0.276  Sum_probs=150.6

Q ss_pred             CCcceeEEEEEEeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCcc
Q 026342           65 GTEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYA  144 (240)
Q Consensus        65 ~~~~~~v~~~~~~~~~v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~  144 (240)
                      .++|++|.+++  +++|++|+||||++.|+||.+|+.+|.++++++++|+++|+|||+|.| ++||+|+|++++......
T Consensus         9 ~~~y~~i~~~~--~~~v~~itln~p~~~Nal~~~~~~el~~al~~~~~d~~v~~vvl~g~g-~~FsaG~Dl~~~~~~~~~   85 (249)
T d1szoa_           9 SQKYENIRLER--DGGVLLVTVHTEGKSLVWTSTAHDELAYCFHDIACDRENKVVILTGTG-PSFCNEIDFTSFNLGTPH   85 (249)
T ss_dssp             TTSCTTEEEEE--ETTEEEEEECBTTBSCEECHHHHHHHHHHHHHHHHCTTCCEEEEECBT-TBSBCEECGGGSCCSSHH
T ss_pred             hCCCCeEEEEE--ECCEEEEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCcceEeeeccc-ccccccchhhhhhccccc
Confidence            46789999998  799999999999999999999999999999999999999999999999 799999999987544333


Q ss_pred             chhhhhhhhHHHHHHHHHcCCCcEEEEECchhchhhHHHhhhcCEEEEeCCcEEe-cccccccccCCCchHHHHHhhcCH
Q 026342          145 DYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFG-QTGPKVGSFDAGYGSSIMSRLVST  223 (240)
Q Consensus       145 ~~~~~~~~~~~~l~~~i~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~a~f~-~pe~~~Gl~p~~g~~~~l~rlvG~  223 (240)
                      +...... .+..++.++.++|||+||+|||+|.| |++|+++||+||++++++|. +||.++|++|+.+++++|+|++|.
T Consensus        86 ~~~~~~~-~~~~l~~~i~~~~~pvIa~v~g~~~G-G~~l~l~~D~ria~~~a~f~~~pe~~~g~~p~~g~~~~l~r~ig~  163 (249)
T d1szoa_          86 DWDEIIF-EGQRLLNNLLSIEVPVIAAVNGPVTN-APEIPVMSDIVLAAESATFQDGPHFPSGIVPGDGAHVVWPHVLGS  163 (249)
T ss_dssp             HHHHHHH-HHHHHHHHHHHCCSCEEEEECSCBCS-STHHHHTSSEEEEETTCEEECTTSGGGTCCCTTTHHHHHHHHHCH
T ss_pred             chhhhhh-hhhhhhhhcccCcccceeeecccccc-ccccccccccccccCCcEEEEeeccccccccccccccccccccCc
Confidence            2222222 35678889999999999999998855 77999999999999999995 799999999999999999999999


Q ss_pred             HHHHHHHhcCCcccc
Q 026342          224 VQQCLWWGLKKHVKC  238 (240)
Q Consensus       224 ~~a~ellltG~~i~A  238 (240)
                      .++++|+++|+.++|
T Consensus       164 ~~a~~l~ltg~~~~a  178 (249)
T d1szoa_         164 NRGRYFLLTGQELDA  178 (249)
T ss_dssp             HHHHHHHHTTCEEEH
T ss_pred             cceeeecccCCCCCH
Confidence            999999999999975

>d1on3a1 c.14.1.4 (A:8-260) Methylmalonyl-CoA carboxyltransferase (transcarboxylase 12S) {Propionibacterium freudenreichii [TaxId: 1744]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Methylmalonyl-CoA carboxyltransferase (transcarboxylase 12S)
species: Propionibacterium freudenreichii [TaxId: 1744]

Probab=97.09  E-value=0.0028  Score=51.68  Aligned_cols=108  Identities=16%  Similarity=0.211  Sum_probs=70.3

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccchhhhhhhhHHHHHHH
Q 026342           81 IAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQ  160 (240)
Q Consensus        81 v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~  160 (240)
                      |..+-.|-.=+.-+++....+.+..+.+.+.++.-.-+.++.|.       |+.+.+    .........+ .+.. ..+
T Consensus        91 v~v~a~Dftv~GGS~g~~~~~K~~~a~e~A~~~~lPlV~l~~sg-------G~r~~e----g~~~l~~~~~-~~~~-~~~  157 (253)
T d1on3a1          91 VHAASQDFTVMGGSAGETQSTKVVETMEQALLTGTPFLFFYDSG-------GARIQE----GIDSLSGYGK-MFFA-NVK  157 (253)
T ss_dssp             EEEEEECTTTGGGCBCHHHHHHHHHHHHHHHHHTCCEEEEEEEC-------SBCGGG----THHHHHHHHH-HHHH-HHH
T ss_pred             chhhhchhhhhcccceecccchhhhhHHHHhhcCCCeEEEEecC-------CCcccc----cceeccccce-ehHH-HHH
Confidence            44444454446788999999999999998877654333333433       344432    1111111111 1111 223


Q ss_pred             HHcCCCcEEEEECchhchhhHHHhhhcCEEEEeCCcEEeccc
Q 026342          161 IRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTG  202 (240)
Q Consensus       161 i~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~a~f~~pe  202 (240)
                      +. -.+|+|+++.|+|.||+.....+||++|+.+++.+++..
T Consensus       158 ls-~~vP~i~vv~Gp~~GG~a~~~~~~d~vi~~~~a~i~~aG  198 (253)
T d1on3a1         158 LS-GVVPQIAIIAGPCAGGASYSPALTDFIIMTKKAHMFITG  198 (253)
T ss_dssp             HT-TTSCEEEEEEEEEESGGGHHHHHSSEEEEETTCEEESSC
T ss_pred             Hh-ccceEEEEEecCcccceeeccchhhheeccccceEEecC
Confidence            33 359999999999999999999999999999999988743

>d2f9yb1 c.14.1.4 (B:23-285) Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, AccD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, AccD
species: Escherichia coli [TaxId: 562]

Probab=96.63  E-value=0.0039  Score=51.03  Aligned_cols=111  Identities=18%  Similarity=0.302  Sum_probs=72.5

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccchhhhhhhhHHHHHHH
Q 026342           81 IAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQ  160 (240)
Q Consensus        81 v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~  160 (240)
                      |+.+-.|-.=..-+++....+.+.++.+.+.++.- =+|.++-.|      |+.+.+-    ........  ........
T Consensus        98 v~v~a~Dftv~gGS~g~~~~~Ki~~a~e~A~~~~l-PlI~~~~sg------G~r~~e~----~~sl~~~~--~~~~~~~~  164 (263)
T d2f9yb1          98 VVAAAFEFAFMGGSMGSVVGARFVRAVEQALEDNC-PLICFSASG------GARMQEA----LMSLMQMA--KTSAALAK  164 (263)
T ss_dssp             CBEEEECTTSTTTCBCTHHHHHHHHHHHHHHHHTC-CEEEEEEES------SBCGGGT----HHHHHHHH--HHHHHHHH
T ss_pred             EEEEeeeehhhccccccchhhHHhHHHHHHHHcCC-CeEEEecCC------Ccccccc----cchhhcch--hHHHHHHH
Confidence            44455555546788999999999999998876643 355554333      4444321    10111111  12222344


Q ss_pred             HHcCCCcEEEEECchhchhhHH-HhhhcCEEEEeCCcEEeccccc
Q 026342          161 IRRLPKPVIAMVAGYAVGGGHV-LHMVCDLTIAADNAIFGQTGPK  204 (240)
Q Consensus       161 i~~~~kP~IAav~G~a~GgG~~-lal~~D~rias~~a~f~~pe~~  204 (240)
                      +.....|+|+++.|+|.||+.. +++++|++++.+.+.+++...+
T Consensus       165 ~~~~~vP~I~v~~g~~~GG~aa~~~~~~d~i~~~~~s~i~~aGP~  209 (263)
T d2f9yb1         165 MQERGLPYISVLTDPTMGGVSASFAMLGDLNIAEPKALIGFAGPR  209 (263)
T ss_dssp             HHHTTCCEEEEEEEEEEHHHHTTGGGCCSEEEECTTCBEESSCHH
T ss_pred             HHhCCCceEEEecCCcchHHHhhhhhcCceEeeecceeeeccCHH
Confidence            5567799999999999999865 7888899998888988885543

>d1xnya1 c.14.1.4 (A:10-267) Propionyl-CoA carboxylase complex B subunit, PccB {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Propionyl-CoA carboxylase complex B subunit, PccB
species: Streptomyces coelicolor [TaxId: 1902]

Probab=96.62  E-value=0.0099  Score=48.39  Aligned_cols=109  Identities=18%  Similarity=0.246  Sum_probs=69.9

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccchhhhhhhhHHHHHHH
Q 026342           81 IAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQ  160 (240)
Q Consensus        81 v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~  160 (240)
                      |+.+..|..=+.-+++....+.+.++++.+.++. +=+|.|.-.|      |+.+.+-.    .......  ...... .
T Consensus        90 v~v~a~Dftv~gGS~g~~~~~K~~r~~e~A~~~~-lPlI~l~dsg------Garm~e~~----~~~~~~~--~~~~~~-~  155 (258)
T d1xnya1          90 VAVFSQDFTVFGGALGEVYGQKIVKVMDFALKTG-CPVVGINDSG------GARIQEGV----ASLGAYG--EIFRRN-T  155 (258)
T ss_dssp             EEEEEECTTSGGGCBCHHHHHHHHHHHHHHHHHT-CCEEEEECCC------SBCGGGTH----HHHHHHH--HHHHHH-H
T ss_pred             EEEEechhhhhcCccchhhHHHHHHHHHHHHHcC-CceEEEecCC------CcccCccc----ccccchh--HHHHHH-H
Confidence            4555555555678899999999999999887764 3455555433      44443211    0111111  111111 2


Q ss_pred             HHcCCCcEEEEECchhchhhHHHhhhcCEEEEeC-CcEEecccc
Q 026342          161 IRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAAD-NAIFGQTGP  203 (240)
Q Consensus       161 i~~~~kP~IAav~G~a~GgG~~lal~~D~rias~-~a~f~~pe~  203 (240)
                      ...-.+|+|+++.|+|.||+.....+||++|+.+ .+.+++..+
T Consensus       156 ~~s~~vP~I~vv~G~~~gG~a~~~~~~~~vim~~~~a~i~~aGP  199 (258)
T d1xnya1         156 HASGVIPQISLVVGPCAGGAVYSPAITDFTVMVDQTSHMFITGP  199 (258)
T ss_dssp             HTTTTSCEEEEECSEEEGGGGHHHHHSSEEEEETTTCEEESSCH
T ss_pred             HHcCCCCEEEEEcCCcChhHHHHHHhccchhhcccceEEEecCH
Confidence            2344699999999999999999999999988875 577776433

>d2a7sa1 c.14.1.4 (A:20-277) Propionyl-CoA carboxylase complex B subunit, PccB {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Propionyl-CoA carboxylase complex B subunit, PccB
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.59  E-value=0.0089  Score=48.71  Aligned_cols=106  Identities=12%  Similarity=0.117  Sum_probs=69.5

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccchhhhhhhhHHHHHHH
Q 026342           81 IAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQ  160 (240)
Q Consensus        81 v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~  160 (240)
                      |..+..|..-+.-+++....+.+.++.+.+.++.- -+|.+.-      |+|+.+.+-    .........  .... ..
T Consensus        91 v~v~a~Dft~~gGS~g~~~g~K~~ra~e~A~~~~l-P~I~l~d------sgGar~~eg----~~~~~~~~~--~~~~-~~  156 (258)
T d2a7sa1          91 VCIFSQDATVFGGSLGEVYGEKIVKVQELAIKTGR-PLIGIND------GAGARIQEG----VVSLGLYSR--IFRN-NI  156 (258)
T ss_dssp             EEEEEECTTSGGGCBCHHHHHHHHHHHHHHHHHTC-CEEEEEC------CCSBCGGGC----THHHHHHHH--HHHH-HH
T ss_pred             EEEecccceEeCCccchhhhhHHHHHHHHHHhcCC-ceEEEec------cCCcccccc----cccccchhh--HHHH-HH
Confidence            45555555556788999999999999998877653 3555442      334554321    111111111  1121 23


Q ss_pred             HHcCCCcEEEEECchhchhhHHHhhhcCEEEEeC-CcEEec
Q 026342          161 IRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAAD-NAIFGQ  200 (240)
Q Consensus       161 i~~~~kP~IAav~G~a~GgG~~lal~~D~rias~-~a~f~~  200 (240)
                      ...-..|+|+++.|+|.||+......||++|+.+ .+.+++
T Consensus       157 ~~~~~vP~I~~v~G~~~gG~a~~~~~~d~~vm~~~~a~i~~  197 (258)
T d2a7sa1         157 LASGVIPQISLIMGAAAGGHVYSPALTDFVIMVDQTSQMFI  197 (258)
T ss_dssp             HHTTTSCEEEEECSCCBSGGGHHHHHSSEEEEEBTTBBCBS
T ss_pred             HHcCCCCEEEEEecCcccHHHHHHHhccceEeecCceEEEc
Confidence            3455799999999999999999999999999865 477666

>d1yg6a1 c.14.1.1 (A:11-193) Clp protease, ClpP subunit {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Clp protease, ClpP subunit
domain: Clp protease, ClpP subunit
species: Escherichia coli [TaxId: 562]

Probab=96.46  E-value=0.0069  Score=46.60  Aligned_cols=89  Identities=12%  Similarity=0.122  Sum_probs=66.9

Q ss_pred             CCHHHHHHHHHHHHHhhhCC---CeeEEEEeeCCCCCcccCCCccccccCCccchhhhhhhhHHHHHHHHHcCCCcEEEE
Q 026342           95 FRPHTVKELIRAFNDARDDS---SVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAM  171 (240)
Q Consensus        95 l~~~~~~~L~~~l~~~~~d~---~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~IAa  171 (240)
                      ++.++..++...+..++.++   .+. |.|.+.|       +|+.                ....+...|..++.|+...
T Consensus        25 I~~~~~~~~i~~l~~l~~~~~~~~I~-l~InS~G-------G~v~----------------~g~~i~d~i~~~~~~v~tv   80 (183)
T d1yg6a1          25 VEDHMANLIVAQMLFLEAENPEKDIY-LYINSPG-------GVIT----------------AGMSIYDTMQFIKPDVSTI   80 (183)
T ss_dssp             BCHHHHHHHHHHHHHHHHHCSSSCEE-EEEEECC-------BCHH----------------HHHHHHHHHHHSSSCEEEE
T ss_pred             ECHHHHHHHHHHHHHhhhhccCCceE-EEEeCCC-------ccHH----------------HHHHHHHHHHhCCCCEEEE
Confidence            67888888888887766432   333 4445544       3321                1234567888999999999


Q ss_pred             ECchhchhhHHHhhhcC--EEEEeCCcEEecccccccc
Q 026342          172 VAGYAVGGGHVLHMVCD--LTIAADNAIFGQTGPKVGS  207 (240)
Q Consensus       172 v~G~a~GgG~~lal~~D--~rias~~a~f~~pe~~~Gl  207 (240)
                      +.|.|.+.|.-+.+++|  .|++.++++|-+.++..|.
T Consensus        81 ~~G~aaS~a~~I~~ag~~~~R~~~~ns~~miH~~~~~~  118 (183)
T d1yg6a1          81 CMGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGY  118 (183)
T ss_dssp             EEEEEETHHHHHHHTSCTTCEEECTTCEEEECCCEEEE
T ss_pred             EEEEeHHHHHHHHHcCCCCceeeCCCceEEeccccccc
Confidence            99999999999999998  7999999999888776653

>d1pixa2 c.14.1.4 (A:1-287) Glutaconyl-CoA decarboxylase A subunit {Acidaminococcus fermentans [TaxId: 905]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Glutaconyl-CoA decarboxylase A subunit
species: Acidaminococcus fermentans [TaxId: 905]

Probab=96.39  E-value=0.0062  Score=50.47  Aligned_cols=112  Identities=20%  Similarity=0.262  Sum_probs=69.5

Q ss_pred             EEEEEcCCC-CCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccchhhhhhhhHHHHHHH
Q 026342           82 AKITINRPD-RRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQ  160 (240)
Q Consensus        82 ~~Itlnrp~-~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~  160 (240)
                      +.|.-|.+. +.-++++...+.+.++++.+.+..- =+|.|.-      |.|+.+.+-... ........+  ...-...
T Consensus       106 v~v~a~D~t~~gGs~~~~~~~K~~r~~~lA~~~~l-P~I~l~d------s~Ga~~~~~~e~-~~~~~~~g~--~~~~~a~  175 (287)
T d1pixa2         106 CVVVASDNKKLAGAWVPGQAECLLRASDTAKTLHV-PLVYVLN------CSGVKFDEQEKV-YPNRRGGGT--PFFRNAE  175 (287)
T ss_dssp             EEEEEECTTTTTTEECTTHHHHHHHHHHHHHHHTC-CEEEEEC------CCEECGGGHHHH-SSSTTSTTH--HHHHHHH
T ss_pred             EEEEEeccccccccchhhHHHHHHHHHHhhhhcCC-CEEEEec------CCcccCCcchhh-ccchhhHHH--HHHHHHH
Confidence            333344443 4578899999999999988876643 3454433      233443321000 000011111  1111335


Q ss_pred             HHcCCCcEEEEECchhchhhHHHhhhcCEEEEeCCcEEecccc
Q 026342          161 IRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGP  203 (240)
Q Consensus       161 i~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~a~f~~pe~  203 (240)
                      +....+|+|++|-|.|.|||.-.+++||++++.+++.+.+..+
T Consensus       176 ls~~~VP~Isvv~G~~~gGgAy~~~~~~~i~~~~~a~i~~~Gp  218 (287)
T d1pixa2         176 LNQLGIPVIVGIYGTNPAGGGYHSISPTVIIAHEKANMAVGGA  218 (287)
T ss_dssp             HHHTTCCEEEEECSEEETHHHHHHHSSSEEEEETTCEEESCCC
T ss_pred             HhhcCCCeEEEecCCccccceeccccceeEEecCCeEEEEECH
Confidence            6667899999999999999988888888888889998877443

>d1vrga1 c.14.1.4 (A:1-251) Propionyl-CoA carboxylase complex B subunit, PccB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Propionyl-CoA carboxylase complex B subunit, PccB
species: Thermotoga maritima [TaxId: 2336]

Probab=96.24  E-value=0.02  Score=46.27  Aligned_cols=106  Identities=16%  Similarity=0.187  Sum_probs=67.2

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccchhhhhhhhHHHHHHH
Q 026342           81 IAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQ  160 (240)
Q Consensus        81 v~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~  160 (240)
                      |+.+..|..-..-+++....+.+.++.+.+.+..- =+|.+.-.|      |..+.+-    ........+  .... ..
T Consensus        88 v~v~a~D~t~~gGs~g~~~~~K~~r~~e~A~~~~~-P~I~~~dsg------G~r~~e~----~~~l~~~~~--~~~~-~~  153 (251)
T d1vrga1          88 VAVFSQDFTVMGGSLGEMHAKKIVKLLDLALKMGI-PVIGINDSG------GARIQEG----VDALAGYGE--IFLR-NT  153 (251)
T ss_dssp             EEEEEECTTTGGGCBCHHHHHHHHHHHHHHHHHTC-CEEEEEEEC------SBCGGGT----HHHHHHHHH--HHHH-HH
T ss_pred             EEEeeehhhhhhcccchHHHHHHHHHHHHHHHcCC-CEEEEEcCC------Ccccccc----ccccccchH--HHHH-HH
Confidence            44444444446788999999999999998876643 344444323      4444321    111111111  1111 22


Q ss_pred             HHcCCCcEEEEECchhchhhHHHhhhcCEEEEeCC-cEEec
Q 026342          161 IRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADN-AIFGQ  200 (240)
Q Consensus       161 i~~~~kP~IAav~G~a~GgG~~lal~~D~rias~~-a~f~~  200 (240)
                      ...-..|+|+++.|+|.||+.....+||++|+.++ +.+.+
T Consensus       154 ~~s~~iP~I~vv~G~~~gG~a~~~~~~d~~im~~~~a~i~~  194 (251)
T d1vrga1         154 LASGVVPQITVIAGPCAGGAVYSPALTDFIVMVDQTARMFI  194 (251)
T ss_dssp             HHTTTSCEEEEEEEEEBGGGGHHHHHSSEEEEETTTCBCBS
T ss_pred             HHCCCCCEEEEEccCccccceehhhhCceEEEEccceeEEe
Confidence            33557999999999999999999999999998755 66555

>d2cbya1 c.14.1.1 (A:15-193) Clp protease, ClpP subunit {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Clp protease, ClpP subunit
domain: Clp protease, ClpP subunit
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.86  E-value=0.025  Score=43.24  Aligned_cols=89  Identities=13%  Similarity=0.115  Sum_probs=63.3

Q ss_pred             CCHHHHHHHHHHHHHhhh---CCCeeEEEEeeCCCCCcccCCCccccccCCccchhhhhhhhHHHHHHHHHcCCCcEEEE
Q 026342           95 FRPHTVKELIRAFNDARD---DSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAM  171 (240)
Q Consensus        95 l~~~~~~~L~~~l~~~~~---d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~IAa  171 (240)
                      +|.++..++...|..++.   ++.+.+ .|.+.|       +|+.                ....++..|..++.|+...
T Consensus        22 I~~~~~~~~i~~l~~l~~~~~~~~I~l-~InS~G-------G~v~----------------~gl~i~d~i~~~~~~v~t~   77 (179)
T d2cbya1          22 VNDEIANRLCAQILLLAAEDASKDISL-YINSPG-------GSIS----------------AGMAIYDTMVLAPCDIATY   77 (179)
T ss_dssp             BCHHHHHHHHHHHHHHHHHCSSSCEEE-EEEECC-------BCHH----------------HHHHHHHHHHHCSSCEEEE
T ss_pred             ECHHHHHHHHHHHHHHhccCCCCeEEE-EeeCCC-------CCHH----------------HHHHHHHHHHhhccceeee
Confidence            788888888877655443   333433 445444       3321                1224566788899999999


Q ss_pred             ECchhchhhHHHhhhcC--EEEEeCCcEEecccccccc
Q 026342          172 VAGYAVGGGHVLHMVCD--LTIAADNAIFGQTGPKVGS  207 (240)
Q Consensus       172 v~G~a~GgG~~lal~~D--~rias~~a~f~~pe~~~Gl  207 (240)
                      +.|.|.+.|.-+.+++|  .|++.++++|-+.++..|.
T Consensus        78 ~~G~aaS~a~~il~ag~k~~R~~~~~s~~miH~~~~~~  115 (179)
T d2cbya1          78 AMGMAASMGEFLLAAGTKGKRYALPHARILMHQPLGGV  115 (179)
T ss_dssp             EEEEEETHHHHHHHTSCTTCEEECTTCEEECCCC----
T ss_pred             hhhhhhhHHHHHHHcCCCCceEECCchHhhcCCCchhc
Confidence            99999999999999999  7999999999887776553

>d1uyra1 c.14.1.4 (A:1482-1814) Acetyl-coenzyme A carboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Acetyl-coenzyme A carboxylase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.97  E-value=0.0067  Score=51.18  Aligned_cols=39  Identities=23%  Similarity=0.156  Sum_probs=35.2

Q ss_pred             CCCcEEEEECchhchhhHHHhhhcCEEEEeCCcEEeccc
Q 026342          164 LPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTG  202 (240)
Q Consensus       164 ~~kP~IAav~G~a~GgG~~lal~~D~rias~~a~f~~pe  202 (240)
                      -..|+|++|.|.|+|+|.-++..||++|+.+++.+.+..
T Consensus       239 ~~iptis~v~G~~vG~gAyl~~L~d~vIm~~~s~i~ltG  277 (333)
T d1uyra1         239 HDIFTITLVTCRSVGIGAYLVRLGQRAIQVEGQPIILTG  277 (333)
T ss_dssp             HHSCEEEEESSCEETHHHHHHHHTCCEEEETTCCEESSC
T ss_pred             CCCCEEEEEeCCccccceeecccccEEEEeCCceEEeeC
Confidence            369999999999999999999999999999998876643

>d2f9ya1 c.14.1.4 (A:4-319) Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha, AccA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha, AccA
species: Escherichia coli [TaxId: 562]

Probab=94.96  E-value=0.044  Score=45.70  Aligned_cols=95  Identities=17%  Similarity=0.160  Sum_probs=66.6

Q ss_pred             CCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccchhhhhhhhHHHHHHHHHcCCCcEEEEE
Q 026342           93 NAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMV  172 (240)
Q Consensus        93 Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~IAav  172 (240)
                      -+++++-...-.+.++.++.-. +=+|-|-=..  .|-.|.+-++..          ........+.++.++.+|+|+.|
T Consensus       130 G~~~p~~~rKa~r~~~~a~~~~-~Pii~~vDtp--G~~~g~~~E~~g----------~~~~~a~~~~~~~~~~vP~i~vv  196 (316)
T d2f9ya1         130 GMPAPEGYRKALRLMQMAERFK-MPIITFIDTP--GAYPGVGAEERG----------QSEAIARNLREMSRLGVPVVCTV  196 (316)
T ss_dssp             GCCCHHHHHHHHHHHHHHHHTT-CCEEEEEEES--CSCCSHHHHHTT----------HHHHHHHHHHHHHTCSSCEEEEE
T ss_pred             ccccHHHHHHHHHHHHHHHHcC-cceEEEEecC--cccCCccccccc----------HHHHHHHHHHHHHhCCCceEEEE
Confidence            4578888888888888887654 3343333222  132333222111          11124456778999999999999


Q ss_pred             CchhchhhHHHhhhcCEEEEeCCcEEec
Q 026342          173 AGYAVGGGHVLHMVCDLTIAADNAIFGQ  200 (240)
Q Consensus       173 ~G~a~GgG~~lal~~D~rias~~a~f~~  200 (240)
                      -|-+.|||..-...+|.+++-++|+|+.
T Consensus       197 ~g~g~~gga~a~~~~d~v~m~~~a~~sv  224 (316)
T d2f9ya1         197 IGEGGSGGALAIGVGDKVNMLQYSTYSV  224 (316)
T ss_dssp             EEEEEHHHHHTTCCCSEEEECTTCEEES
T ss_pred             EhhhhchhhhhhhhhhHHHHHhhhHHhh
Confidence            9999999998888999999999999984

>d1y7oa1 c.14.1.1 (A:2-193) Clp protease, ClpP subunit {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Clp protease, ClpP subunit
domain: Clp protease, ClpP subunit
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=94.66  E-value=0.085  Score=40.55  Aligned_cols=90  Identities=18%  Similarity=0.166  Sum_probs=63.4

Q ss_pred             CCHHHHHHHHHHHHHhhh-CC--CeeEEEEeeCCCCCcccCCCccccccCCccchhhhhhhhHHHHHHHHHcCCCcEEEE
Q 026342           95 FRPHTVKELIRAFNDARD-DS--SVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAM  171 (240)
Q Consensus        95 l~~~~~~~L~~~l~~~~~-d~--~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~IAa  171 (240)
                      ++.++...+...|..++. |+  .+. +.|.+.|       +|+.                ....++..+..++.|+...
T Consensus        33 I~~~~~~~~~~~l~~l~~~~~~~~I~-l~InS~G-------G~v~----------------~glai~d~i~~~~~~v~t~   88 (192)
T d1y7oa1          33 VEDNMANSVIAQLLFLDAQDSTKDIY-LYVNTPG-------GSVS----------------AGLAIVDTMNFIKADVQTI   88 (192)
T ss_dssp             BCHHHHHHHHHHHHHHHHHCTTSCEE-EEEEECC-------BCHH----------------HHHHHHHHHHHSSSCEEEE
T ss_pred             EchHHHHHHHHHHHHhhhhcccCcee-eeecCCC-------CCHH----------------HHHHHHHHHHhcCcceEEE
Confidence            688888888887766543 22  343 4446555       2221                1234567788899999999


Q ss_pred             ECchhchhhHHHhhh--cCEEEEeCCcEEeccccccccc
Q 026342          172 VAGYAVGGGHVLHMV--CDLTIAADNAIFGQTGPKVGSF  208 (240)
Q Consensus       172 v~G~a~GgG~~lal~--~D~rias~~a~f~~pe~~~Gl~  208 (240)
                      +.|.|.+.|..|.++  +|.|++.++++|-+.++..|..
T Consensus        89 ~~G~aaS~as~il~aG~~g~R~~~pns~~miHq~~~~~~  127 (192)
T d1y7oa1          89 VMGMAASMGTVIASSGAKGKRFMLPNAEYMIHQPMGGTG  127 (192)
T ss_dssp             EEEEEETHHHHHHTTSCTTCEEECTTCEEECCCCC----
T ss_pred             eccccCCccceeeeecCCCccccchHHHHHhhccccccc
Confidence            999999999888776  5799999999999988776643

>d2f6ia1 c.14.1.1 (A:177-366) Clp protease, ClpP subunit {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Clp protease, ClpP subunit
domain: Clp protease, ClpP subunit
species: Plasmodium falciparum [TaxId: 5833]

Probab=94.58  E-value=0.16  Score=38.78  Aligned_cols=89  Identities=13%  Similarity=0.113  Sum_probs=66.7

Q ss_pred             CCHHHHHHHHHHHHHhhhC--CCeeEEEEeeCCCCCcccCCCccccccCCccchhhhhhhhHHHHHHHHHcCCCcEEEEE
Q 026342           95 FRPHTVKELIRAFNDARDD--SSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMV  172 (240)
Q Consensus        95 l~~~~~~~L~~~l~~~~~d--~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~IAav  172 (240)
                      +|.++..++...+..++..  +.+. +.|.+.|       +|+.                ....++..+..++.|+...+
T Consensus        27 Id~~~~~~~i~~l~~l~~~~~~~I~-l~INS~G-------G~v~----------------~g~ai~d~i~~~~~~v~tv~   82 (190)
T d2f6ia1          27 INKKTADELISQLLYLDNINHNDIK-IYINSPG-------GSIN----------------EGLAILDIFNYIKSDIQTIS   82 (190)
T ss_dssp             BCHHHHHHHHHHHHHHHHHCCSCEE-EEEEECC-------BCHH----------------HHHHHHHHHHHSSSCEEEEE
T ss_pred             eCHHHHHHHHHHHHHHhccCCCCeE-EEEeCch-------hhhh----------------HHHHHHHHHHhhCCceEEEE
Confidence            7888888888887776542  3343 3344444       3322                12345667888999999999


Q ss_pred             CchhchhhHHHhhhcC--EEEEeCCcEEecccccccc
Q 026342          173 AGYAVGGGHVLHMVCD--LTIAADNAIFGQTGPKVGS  207 (240)
Q Consensus       173 ~G~a~GgG~~lal~~D--~rias~~a~f~~pe~~~Gl  207 (240)
                      .|.|.+.|..+++++|  .|++.++++|-+..+..|.
T Consensus        83 ~G~aaS~a~~i~~aG~kg~R~~~pns~imiH~~s~~~  119 (190)
T d2f6ia1          83 FGLVASMASVILASGKKGKRKSLPNCRIMIHQPLGNA  119 (190)
T ss_dssp             EEEECHHHHHHHHTSCTTCEEECTTCEEESSCTTCSC
T ss_pred             eccccchhHHHHHhCCCCccccCCCcEEEEccccccc
Confidence            9999999999999998  6999999999988887664

>d2a7sa2 c.14.1.4 (A:278-548) Propionyl-CoA carboxylase complex B subunit, PccB {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Propionyl-CoA carboxylase complex B subunit, PccB
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=94.52  E-value=0.17  Score=41.05  Aligned_cols=110  Identities=19%  Similarity=0.247  Sum_probs=76.1

Q ss_pred             CCCEEEEEEcCCCC-CCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccchhhhhhhhHHH
Q 026342           78 GEGIAKITINRPDR-RNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLD  156 (240)
Q Consensus        78 ~~~v~~Itlnrp~~-~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~  156 (240)
                      ++.-.-|.-|++.. ...++.+-.....+.++.++.. ++=+|.|.-..  .|..|.+.+..         ...+ ...+
T Consensus        68 ~G~~vgvian~~~~~~G~~~~~~~~Ka~rfi~lc~~~-~iPlv~l~dtp--Gf~~G~~~E~~---------g~~~-~ga~  134 (271)
T d2a7sa2          68 DGRPVGIVANQPTHFAGCLDINASEKAARFVRTCDCF-NIPIVMLVDVP--GFLPGTDQEYN---------GIIR-RGAK  134 (271)
T ss_dssp             SSCEEEEEEECTTTGGGCBCHHHHHHHHHHHHHHHHT-TCCEEEEEEEC--CBCCCHHHHHH---------CHHH-HHHH
T ss_pred             CCeEEEEEeccccccCCCcCHHHHHHHHHHHHHHHHh-CCceEEeechh--hhhhhccHHHh---------hHHH-HHHH
Confidence            44444455566643 3589999999999999988765 35566665543  46655443211         0111 3456


Q ss_pred             HHHHHHcCCCcEEEEECchhchhhHHHh----hhcCEEEEeCCcEEec
Q 026342          157 LQVQIRRLPKPVIAMVAGYAVGGGHVLH----MVCDLTIAADNAIFGQ  200 (240)
Q Consensus       157 l~~~i~~~~kP~IAav~G~a~GgG~~la----l~~D~rias~~a~f~~  200 (240)
                      ++.++.++..|.|+.|-|.+.|+|....    +.+|+++|.++++++.
T Consensus       135 ~~~a~a~~~vP~isvi~~~~~G~~~~am~~~~~~~d~~~AwP~A~igv  182 (271)
T d2a7sa2         135 LLYAYGEATVPKITVITRKAYGGAYCVMGSKDMGCDVNLAWPTAQIAV  182 (271)
T ss_dssp             HHHHHHHCCSCEEEEEEEEEEHHHHHHTTCGGGTCSEEEECTTCEEES
T ss_pred             HHHHHHhCCCCeEEEEeCCccchhhhhhcccccccceEEEecceeEee
Confidence            7889999999999999999999875433    2479998888888876

>d1tg6a1 c.14.1.1 (A:1-193) Clp protease, ClpP subunit {Human (Homo sapiens), mitochondrial [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Clp protease, ClpP subunit
domain: Clp protease, ClpP subunit
species: Human (Homo sapiens), mitochondrial [TaxId: 9606]

Probab=94.23  E-value=0.095  Score=40.38  Aligned_cols=89  Identities=15%  Similarity=0.176  Sum_probs=65.5

Q ss_pred             CCHHHHHHHHHHHHHhhh---CCCeeEEEEeeCCCCCcccCCCccccccCCccchhhhhhhhHHHHHHHHHcCCCcEEEE
Q 026342           95 FRPHTVKELIRAFNDARD---DSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAM  171 (240)
Q Consensus        95 l~~~~~~~L~~~l~~~~~---d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~IAa  171 (240)
                      ++.++..++...+..++.   +..+.+.| .+.|       +|+.                ....++..|..++.|+...
T Consensus        35 I~~~~~~~~i~~l~~l~~~~~~~~I~l~I-nS~G-------G~v~----------------~g~~i~d~i~~~~~~V~tv   90 (193)
T d1tg6a1          35 IDDSVASLVIAQLLFLQSESNKKPIHMYI-NSPG-------GVVT----------------AGLAIYDTMQYILNPICTW   90 (193)
T ss_dssp             BCHHHHHHHHHHHHHHHHHCSSSCEEEEE-EECC-------BCHH----------------HHHHHHHHHHHSCSCEEEE
T ss_pred             EchHHHHHHHHHHHHhcccCCCcEEEEEe-ecCc-------ccHH----------------HHHHHHHHHHhhcCceEEE
Confidence            677888887776665553   23454443 5554       2211                1224566788899999999


Q ss_pred             ECchhchhhHHHhhhcC--EEEEeCCcEEecccccccc
Q 026342          172 VAGYAVGGGHVLHMVCD--LTIAADNAIFGQTGPKVGS  207 (240)
Q Consensus       172 v~G~a~GgG~~lal~~D--~rias~~a~f~~pe~~~Gl  207 (240)
                      +.|.|.+.|..+.+++|  .|++.++++|-+.++..|.
T Consensus        91 ~~G~aaS~a~~il~aG~~g~R~~~pns~~miHq~~~~~  128 (193)
T d1tg6a1          91 CVGQAASMGSLLLAAGTPGMRHSLPNSRIMIHQPSGGA  128 (193)
T ss_dssp             EEEEEETHHHHHHHTSCTTCEEECTTCEEEECCCCCCC
T ss_pred             EccchHHHHHHHhhcCccCccccCcccHHHhcCCccCC
Confidence            99999999999999999  5999999999998887664

>d1vrga2 c.14.1.4 (A:252-515) Propionyl-CoA carboxylase complex B subunit, PccB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Propionyl-CoA carboxylase complex B subunit, PccB
species: Thermotoga maritima [TaxId: 2336]

Probab=94.16  E-value=0.23  Score=40.03  Aligned_cols=110  Identities=15%  Similarity=0.128  Sum_probs=74.9

Q ss_pred             CCCEEEEEEcCCC-CCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccchhhhhhhhHHH
Q 026342           78 GEGIAKITINRPD-RRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLD  156 (240)
Q Consensus        78 ~~~v~~Itlnrp~-~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~  156 (240)
                      ++...-+.-|+|. ...+++.+-.....+.++.++... +=.|.|.=..  .|-.|.+-+..         ...+ ...+
T Consensus        65 ~G~~vgvian~~~~~~G~~~~~~a~Kaa~fi~lc~~~~-iPli~l~Dtp--Gf~~G~~~E~~---------g~~~-~ga~  131 (264)
T d1vrga2          65 QGKTVGIVANQPSVLAGVLDIDSSDKAARFIRFLDAFN-IPILTFVDTP--GYLPGVAQEHG---------GIIR-HGAK  131 (264)
T ss_dssp             TTEEEEEEEECTTSGGGCBCHHHHHHHHHHHHHHHHTT-CCEEEEEEEC--CBCCCHHHHHT---------THHH-HHHH
T ss_pred             cCceEEEEeccccccccchhhhhHHHHHHHHHHHHHhC-CceEEEeecc--cccccHHHHHH---------hHHH-HHHH
Confidence            4444445556664 246799999999999999888753 5566665442  36555443211         1111 2456


Q ss_pred             HHHHHHcCCCcEEEEECchhchhhHHHhh----hcCEEEEeCCcEEec
Q 026342          157 LQVQIRRLPKPVIAMVAGYAVGGGHVLHM----VCDLTIAADNAIFGQ  200 (240)
Q Consensus       157 l~~~i~~~~kP~IAav~G~a~GgG~~lal----~~D~rias~~a~f~~  200 (240)
                      ++.++.++.+|.|..|=|.+.|+|..-..    .+|++++-+++.++.
T Consensus       132 ~~~a~a~~~vP~i~viir~~yG~g~~am~~~~~~~d~~~awP~a~~~v  179 (264)
T d1vrga2         132 LLYAYSEATVPKITVILRKAYGGAYIAMGSKHLGADMVLAWPSAEIAV  179 (264)
T ss_dssp             HHHHHHHCCSCEEEEEEEEEEHHHHHHTTCGGGTCSEEEECTTCEEES
T ss_pred             HHHHHhcCCCCEEEEEeCCcccHHhhhccCCccCCCeeeeccceeEEe
Confidence            78899999999999999999998763322    489988888877765

>d1xnya2 c.14.1.4 (A:268-530) Propionyl-CoA carboxylase complex B subunit, PccB {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Propionyl-CoA carboxylase complex B subunit, PccB
species: Streptomyces coelicolor [TaxId: 1902]

Probab=93.80  E-value=0.3  Score=39.29  Aligned_cols=110  Identities=19%  Similarity=0.159  Sum_probs=75.2

Q ss_pred             CCCEEEEEEcCCC-CCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccchhhhhhhhHHH
Q 026342           78 GEGIAKITINRPD-RRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLD  156 (240)
Q Consensus        78 ~~~v~~Itlnrp~-~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~  156 (240)
                      ++.-.-|.-|+|. ...+++.+......+.++.++... +=+|.|.-..  .|-.|.+-+..         ...+ ...+
T Consensus        63 ~G~~vgvia~~~~~~~G~~~~~~a~Ka~~fi~lc~~~~-iPli~l~d~p--Gf~~G~~~E~~---------g~~~-~ga~  129 (263)
T d1xnya2          63 EGRPVGIVANQPMQFAGCLDITASEKAARFVRTCDAFN-VPVLTFVDVP--GFLPGVDQEHD---------GIIR-RGAK  129 (263)
T ss_dssp             TTEEEEEEEECTTTGGGCBCHHHHHHHHHHHHHHHHTT-CCEEEEEEEC--CBCCCHHHHHT---------THHH-HHHH
T ss_pred             ccceEEEEecccceecCCcchhhHHHHHHHHHHHHHhC-CceEEeeccc--ccccchhHHHH---------hHHH-HHHH
Confidence            4443444445554 356899999999999999888763 5566665543  36555443211         1111 3456


Q ss_pred             HHHHHHcCCCcEEEEECchhchhhHHHhh----hcCEEEEeCCcEEec
Q 026342          157 LQVQIRRLPKPVIAMVAGYAVGGGHVLHM----VCDLTIAADNAIFGQ  200 (240)
Q Consensus       157 l~~~i~~~~kP~IAav~G~a~GgG~~lal----~~D~rias~~a~f~~  200 (240)
                      ++.++.++..|.|+.|-|.+.|+|.....    ..|+++|.+++.++.
T Consensus       130 ~~~a~a~~~vPkitvi~~~~~Gga~~~m~~~~~~~d~~~awP~a~~gv  177 (263)
T d1xnya2         130 LIFAYAEATVPLITVITRKAFGGAYDVMGSKHLGADLNLAWPTAQIAV  177 (263)
T ss_dssp             HHHHHHHCCSCEEEEEEEEEEHHHHHHTTCGGGTCSEEEECTTCEEES
T ss_pred             HHHHHHccCCCeEEEEecCccccceeccCCcccCCcEEEEcchhhhhc
Confidence            78899999999999999999998765432    368998888888875

>d1on3a2 c.14.1.4 (A:261-524) Methylmalonyl-CoA carboxyltransferase (transcarboxylase 12S) {Propionibacterium freudenreichii [TaxId: 1744]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Methylmalonyl-CoA carboxyltransferase (transcarboxylase 12S)
species: Propionibacterium freudenreichii [TaxId: 1744]

Probab=93.20  E-value=0.31  Score=39.28  Aligned_cols=110  Identities=16%  Similarity=0.122  Sum_probs=73.3

Q ss_pred             CCCEEEEEEcCCC-CCCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccchhhhhhhhHHH
Q 026342           78 GEGIAKITINRPD-RRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLD  156 (240)
Q Consensus        78 ~~~v~~Itlnrp~-~~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~  156 (240)
                      ++.-.-|.=|+|. ...+++.+-.....+.++.++.- ++=+|.|.=..  .|..|-+-+..         ...+ ...+
T Consensus        65 ~G~~vgvian~~~~~~G~~~~~~a~Kaarfi~lc~~~-~iPlv~l~D~p--Gf~~G~~~E~~---------g~i~-~ga~  131 (264)
T d1on3a2          65 NGRSVGIVANQPSVMSGCLDINASDKAAEFVNFCDSF-NIPLVQLVDVP--GFLPGVQQEYG---------GIIR-HGAK  131 (264)
T ss_dssp             TTEEEEEEEECTTSGGGCBCHHHHHHHHHHHHHHHHT-TCCEEEEEEEC--CBCCCHHHHHT---------THHH-HHHH
T ss_pred             ecceEEEEeccchhcccccChHHHHHHHHHHHHHHhc-CCceEEEeccc--cccccHHHHHH---------HHHH-HHHH
Confidence            3433334445554 36789999999999999988875 45566665442  46666543211         1111 3456


Q ss_pred             HHHHHHcCCCcEEEEECchhchhhHHHhh----hcCEEEEeCCcEEec
Q 026342          157 LQVQIRRLPKPVIAMVAGYAVGGGHVLHM----VCDLTIAADNAIFGQ  200 (240)
Q Consensus       157 l~~~i~~~~kP~IAav~G~a~GgG~~lal----~~D~rias~~a~f~~  200 (240)
                      ++.++.++.+|.|+.|=|.++|+|..-..    .+|++++-+++.++.
T Consensus       132 ~~~a~a~~~vP~itvi~rkayG~g~~am~g~~~~~d~~~aWP~A~~~v  179 (264)
T d1on3a2         132 MLYAYSEATVPKITVVLRKAYGGSYLAMCNRDLGADAVYAWPSAEIAV  179 (264)
T ss_dssp             HHHHHHHCCSCEEEEEEEEEEHHHHHTTTCGGGTCSEEEECTTCEEES
T ss_pred             HHHHHHcCCCCEEEEEeccccCccccccccccCChhheeeHHhhHhhh
Confidence            78899999999999999999998764332    367777777766654

>d1pixa3 c.14.1.4 (A:288-586) Glutaconyl-CoA decarboxylase A subunit {Acidaminococcus fermentans [TaxId: 905]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Glutaconyl-CoA decarboxylase A subunit
species: Acidaminococcus fermentans [TaxId: 905]

Probab=82.00  E-value=5.7  Score=31.99  Aligned_cols=79  Identities=9%  Similarity=0.078  Sum_probs=54.1

Q ss_pred             CCCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccchhhhhhhhHHHHHHHHHcCCCcEEEE
Q 026342           92 RNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAM  171 (240)
Q Consensus        92 ~Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~IAa  171 (240)
                      .-+++.+......+.++.+++.. +=+|.|.=.  ..|-.|-+-+.         ....+ ...+++.++.++.+|.|+.
T Consensus        96 ~G~l~~~~a~K~~rfi~lc~~~~-iPlv~l~D~--pGf~~g~~~E~---------~g~~r-~ga~~~~a~~~~~VP~isv  162 (299)
T d1pixa3          96 GGKLYRQGLVKMNEFVTLCARDR-LPIVWIQDT--TGIDVGNDAEK---------AELLG-LGQSLIYSIQTSHIPQFEI  162 (299)
T ss_dssp             TTEECHHHHHHHHHHHHHHHHTT-CCEEEEECC--CEECCSHHHHH---------TTHHH-HHHHHHHHHHTCCCCEEEE
T ss_pred             CCccCHHHHHHHHHHHHHHHHcC-CeEEEEEeC--CCcccchHHHh---------hhHHH-HHHHHHHHHHhhcceeEEE
Confidence            45688999999999999988764 445555432  23555543221         11111 3456788999999999999


Q ss_pred             ECchhchhhHHH
Q 026342          172 VAGYAVGGGHVL  183 (240)
Q Consensus       172 v~G~a~GgG~~l  183 (240)
                      |=|.+.|+|...
T Consensus       163 i~r~~~G~a~~a  174 (299)
T d1pixa3         163 TLRKGTAAAHYV  174 (299)
T ss_dssp             ECSEEETTHHHH
T ss_pred             Eecccccccccc
Confidence            999999988543

>d1uyra2 c.14.1.4 (A:1815-2218) Acetyl-coenzyme A carboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Acetyl-coenzyme A carboxylase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=81.68  E-value=4.6  Score=34.00  Aligned_cols=107  Identities=16%  Similarity=0.284  Sum_probs=63.4

Q ss_pred             CCCCHHHHHHHHHHHHHhhhCCCeeEEEEeeCCCCCcccCCCccccccCCccchhhhhhhhHHHHHHHHHcCCCcEEEEE
Q 026342           93 NAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMV  172 (240)
Q Consensus        93 Nal~~~~~~~L~~~l~~~~~d~~v~vvVltg~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~IAav  172 (240)
                      -.+.++-.....+.+.++.+..++=+|+|.-.  ..|+.|-+-..-      .   ..+ ....++.++.++..|+|..|
T Consensus       108 gv~~p~sA~K~A~~i~d~cd~~~lPLi~l~D~--pGF~~G~~~E~~------g---ilr-~GA~iv~A~~~~~vP~i~vI  175 (404)
T d1uyra2         108 QVWHPNSAFKTAQAINDFNNGEQLPMMILANW--RGFSGGQRDMFN------E---VLK-YGSFIVDALVDYKQPIIIYI  175 (404)
T ss_dssp             TCBCHHHHHHHHHHHHHHHTTSCCCEEECCCC--CCBCC------C------T---HHH-HHHHHHHHHHTCCSCEEEEE
T ss_pred             CccCchHHHHHHHHHHHhhhccccceEEeecC--CcccCcHHHHHH------H---HHH-HHHHHHHHHHhcCCCEEEEE
Confidence            35677888888888877766556667777654  468888653211      1   111 23467889999999999999


Q ss_pred             --CchhchhhHHHhh---hcCEEEEeCCcEEecccccccccCCCchHHH
Q 026342          173 --AGYAVGGGHVLHM---VCDLTIAADNAIFGQTGPKVGSFDAGYGSSI  216 (240)
Q Consensus       173 --~G~a~GgG~~lal---~~D~rias~~a~f~~pe~~~Gl~p~~g~~~~  216 (240)
                        .|.+.||.+.+.-   ..|..     ..|+.|..+.|..++.|+...
T Consensus       176 ~~~g~~~GGa~vv~~~~~~~~~~-----~~yAwP~a~~gVm~pEGav~I  219 (404)
T d1uyra2         176 PPTGELRGGSWVVVDPTINADQM-----EMYADVNARAGVLEPQGMVGI  219 (404)
T ss_dssp             CTTCEEEHHHHHTTCGGGGTTTE-----EEEEETTCEEESSCHHHHHHH
T ss_pred             eCCcccchhhhhcccCccCCccc-----eEEECCccccccCChhhhhhh
Confidence              7877776665432   11211     124455555565655544433