Citrus Sinensis ID: 026365

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------24
Protein Sequence
MSCNGCRVLRKGCSESCILRPCLQWIESPESQGHATVFVAKFFGRAGLMSFISAVPESQRPALFQSLLYEACGRTVNPVNGAVGLLWTGNWHVCQAAVETVLRGGTLRPVPELLNSCGGSPTPTSDEVSEAEVTCTDMSRLQDRSFPSSHCRFSSSRSKVSPAKRKRVEESAMKLQQSDLDLRLTPRFTGKVPPEVRRRPGTPSMNSEESGTTTCFESGLTDHRYLNGAEERKLLNLFV
Secondary Structure (PSIPRED)
ccccHHHHccccccccccccccccccccccccccHHHHHHHHHccccHHHHHHccccccHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccHHHHHcccccccccccccccccccccccccccccccccHHHHHHHcccccccccccccccccccccccccccccccccccccccEEcccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHccccccccEcccEEEcccccccccHEEEEEEHccHHHHHHHHHHccHHHcHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHccccccccccccccccccccccHHccccccccccccccccccccccccccccccccccccccccccEEcccccccccccccccccccccccccccEEEEcccccccccccccccccEEEEEcc
Coil and Loop (DISEMBL)
mscngcrvlrkgcsescilrpclqwiespesqghATVFVAKFFGRAGLMSFisavpesqrpaLFQSLLYEACgrtvnpvngavgllWTGNWHVCQAAVETVlrggtlrpvpellnscggsptptsdevseaevtctdmsrlqdrsfpsshcrfsssrskvspakrKRVEESAMKLQQSdldlrltprftgkvppevrrrpgtpsmnseesgtttcfesgltdhrylnGAEERKLLNLFV
Flexible Loop (DISEMBL)
mscngcrvlrkgcsesCILRPCLQWIESPESQGHATVFVAKFFGRAGLMSFISAVPESQRPALFQSLLYEACGRTVNPVNGAVGLLWTGNWHVCQAAVETVLRGGTLRPVPELLNscggsptptsdevsEAEVTCTDmsrlqdrsfpsshcrfsssrskvspakrkrveesamklqqsdldlrltprftgkvppevrrrpgtpsmnseesgttTCFESGLTDhrylngaeerkllnlfv
Low Complexity Region (SEG)
MSCNGCRVLRKGCSESCILRPCLQWIESPESQGHATVFVAKFFGRAGLMSFISAVPESQRPALFQSLLYEACGRTVNPVNGAVGLLWTGNWHVCQAAVETVLRGGTLRPVPELLNSCGGSPTPTSDEVSEAEVTCTDMSRLQDrsfpsshcrfsssrskvspakrkrvEESAMKLQQSDLDLRLTPRFTGKVPPEVRRRPGTPSMNSEESGTTTCFESGLTDHRYLNGAEERKLLNLFV
Disordered region (IsUnstruct)
****GCRVLRKGCSESCILRPCLQWIESPESQGHATVFVAKFFGRAGLMSFISAVPESQRPALFQSLLYEACGRTVNPVNGAVGLLWTGNWHVCQAAVETVLRGGTLRPVPELL*****************************************************************************************************************************
Disordered Region (DISOPRED)
MSCNGCRVLRKGCSESCILRPCLQWIESPESQGHATVFVAKFFGRAGLMSFISAVPESQRPALFQSLLYEACGRTVNPVNGAVGLLWTGNWHVCQAAVETVLRGGTLR***********************************************************************************************************************GAEERKLLNLFV
Disordered Region (DISEMBL)
MSCNGCRVLRKGCSESCILRPCLQWIESPESQGHATVFVAKFFGRAGLMSFISAVPESQRPALFQSLLYEACGRTVNPVNGAVGLLWTGNWHVCQAAVETVLRGGTLRPVPELLNSC*****************CTDMSRL**********************************QQSDLDLRLTPRFTGKVPPE*******************CFESGLTDHRYLNGAEERKLLNLFV
Disordered Region (DISPRO)
*SCNGCRVLRKGCSESCILRPCLQWIESPESQGHATVFVAKFFGRAGLMSFISAVPESQRPALFQSLLYEACGRTVNPVNGAVGLLWTGNWHVCQAAVETVLRGGTLRPVPELLNSCG************************************************************DLDLRLTPRFT**********************TTTCFESGLTD****NGAEERKLLNLFV
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSCNGCRVLRKGCSESCILRPCLQWIESPESQGHATVFVAKFFGRAGLMSFISAVPESQRPALFQSLLYEACGRTVNPVNGAVGLLWTGNWHVCQAAVETVLRGGTLRPVPELLNSCGGSPTPTSDEVSEAEVTCTDMSRLQDRSFPSSHCRFSSSRSKVSPAKRKRVEESAMKLQQSDLDLRLTPRFTGKVPPEVRRRPGTPSMNSEESGTTTCFESGLTDHRYLNGAEERKLLNLFV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	239	2.2.26 [Sep-21-2011]
Q9SN23	247	LOB domain-containing pro	yes	no	0.962	0.931	0.652	1e-76
Q9FN11	250	LOB domain-containing pro	no	no	0.979	0.936	0.631	9e-74
Q9SZE8	240	LOB domain-containing pro	no	no	0.924	0.920	0.608	4e-71
Q9ZW96	233	LOB domain-containing pro	no	no	0.460	0.472	0.7	4e-44
Q9M886	263	LOB domain-containing pro	no	no	0.506	0.460	0.611	2e-42
Q9CA30	233	LOB domain-containing pro	no	no	0.464	0.476	0.630	3e-40
Q9LQR0	190	LOB domain-containing pro	no	no	0.564	0.710	0.266	9e-09
Q9SK08	232	LOB domain-containing pro	no	no	0.334	0.344	0.305	3e-08
O64836	311	LOB domain-containing pro	no	no	0.330	0.254	0.309	6e-08
Q9FKZ3	313	LOB domain-containing pro	no	no	0.330	0.252	0.333	2e-07

>sp|Q9SN23|LBD38_ARATH LOB domain-containing protein 38 OS=Arabidopsis thaliana GN=LBD38 PE=2 SV=1

 Score =  285 bits (730), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 167/256 (65%), Positives = 188/256 (73%), Gaps = 26/256 (10%)

Query: 1   MSCNGCRVLRKGCSESCILRPCLQWIESPESQGHATVFVAKFFGRAGLMSFISAVPESQR 60
           MSCNGCRVLRKGCSE+CILRPC+QWIESPE+QGHATVFVAKFFGRAGLMSFISAVPESQ 
Sbjct: 1   MSCNGCRVLRKGCSENCILRPCIQWIESPEAQGHATVFVAKFFGRAGLMSFISAVPESQC 60

Query: 61  PALFQSLLYEACGRTVNPVNGAVGLLWTGNWHVCQAAVETVLRGGTLRPVPELLNSCG-- 118
           PALFQSLLYEACGRTVNPVNGAVGLLWTGNW+VCQAAVETVLRGG+L+P+PELLN  G  
Sbjct: 61  PALFQSLLYEACGRTVNPVNGAVGLLWTGNWNVCQAAVETVLRGGSLKPIPELLNGGGFA 120

Query: 119 GSPTPTSDEVSEAEVTCTDMSRLQ------DRSFPSSHCRFSSSRSK----VSPAKRKRV 168
           G P+PTSDE SE    CT+M  L+      DR+    HCRFSSSRS+     SP KRKR+
Sbjct: 121 GFPSPTSDEASE---ICTEMLNLRKADDSGDRNI-YHHCRFSSSRSRSRSTASPPKRKRL 176

Query: 169 EESAMKLQQSDLDLRLTPRFTGKVPPEVRRRPGTPSMNSEESGTTTCFESGLTDHRYL-- 226
             S+ +   S+LDL L P +  K  P    +  TPSM SEES TT  F++     RY+  
Sbjct: 177 --SSEQQPSSELDLSLIPIYPIKTLP---FKEDTPSMYSEESVTTVSFQNNNAGDRYVRC 231

Query: 227 ---NGAEERKLLNLFV 239
               G    KLLNLF 
Sbjct: 232 GGGGGGATTKLLNLFA 247

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FN11|LBD37_ARATH LOB domain-containing protein 37 OS=Arabidopsis thaliana GN=LBD37 PE=2 SV=1

 Score =  276 bits (706), Expect = 9e-74,   Method: Compositional matrix adjust.
 Identities = 161/255 (63%), Positives = 183/255 (71%), Gaps = 21/255 (8%)

Query: 1   MSCNGCRVLRKGCSESCILRPCLQWIESPESQGHATVFVAKFFGRAGLMSFISAVPESQR 60
           MSCNGCRVLRKGCSE+CILRPC+QWIE+ ++QGHATVFVAKFFGRAGLMSFISAVP+SQR
Sbjct: 1   MSCNGCRVLRKGCSENCILRPCIQWIETADAQGHATVFVAKFFGRAGLMSFISAVPDSQR 60

Query: 61  PALFQSLLYEACGRTVNPVNGAVGLLWTGNWHVCQAAVETVLRGGTLRPVPELLNSCG-- 118
           PALFQSLLYEACGRTVNPVNGA+G+LWTGNW++CQAAVETVLRGG+LRP+PELL   G  
Sbjct: 61  PALFQSLLYEACGRTVNPVNGAIGMLWTGNWNICQAAVETVLRGGSLRPIPELLTHGGGF 120

Query: 119 -GSPTPTSDEVSEAEVTCTDMSRLQ-----DRSF----PSSHCRFSSSRSKVSPAKRKRV 168
            G P+PTS+E SE    CT+M  LQ     DR+       S  R  S+    SP KRKR+
Sbjct: 121 AGFPSPTSEEASE---ICTEMLNLQQNDSTDRNIYHHSRFSSSRSRSTMDSSSPTKRKRL 177

Query: 169 EESAMKLQQSDLDLRLTPRFTGK--VPPEVRRRPGTPSMNSEESGTTTCFES--GLTDHR 224
             S+     S+LDL L P F  K   P   RRR  TPSMNSE+SGTTT   +     D  
Sbjct: 178 --SSEDQPSSELDLSLIPNFPIKQATPSSTRRRSVTPSMNSEDSGTTTTTTAFCDKGDVY 235

Query: 225 YLNGAEERKLLNLFV 239
              G E  KLLNLFV
Sbjct: 236 GNGGGETTKLLNLFV 250

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SZE8|LBD39_ARATH LOB domain-containing protein 39 OS=Arabidopsis thaliana GN=LBD39 PE=2 SV=1

 Score =  267 bits (683), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 157/258 (60%), Positives = 182/258 (70%), Gaps = 37/258 (14%)

Query: 1   MSCNGCRVLRKGCSESCILRPCLQWIESPESQGHATVFVAKFFGRAGLMSFISAVPESQR 60
           MSCNGCRVLRKGCSE+CILRPCLQWIES ESQGHATVFVAKFFGRAGLMSFIS+VPE QR
Sbjct: 1   MSCNGCRVLRKGCSETCILRPCLQWIESAESQGHATVFVAKFFGRAGLMSFISSVPELQR 60

Query: 61  PALFQSLLYEACGRTVNPVNGAVGLLWTGNWHVCQAAVETVLRGGTLRPVPELLNSCGGS 120
           PALFQSLL+EACGRTVNPVNGAVG+LWT NWHVCQAAVETVLRGGTLRP+ +LL S   S
Sbjct: 61  PALFQSLLFEACGRTVNPVNGAVGMLWTRNWHVCQAAVETVLRGGTLRPISDLLES--PS 118

Query: 121 PTPTSDEVSEAEVTCTDMSRLQDRSFPSSHCRFSSSRS----KVSPAKRKRVEESAMKLQ 176
              + DE S  E+   D+SR Q     + HCRFS+SRS    K S   RKR++       
Sbjct: 119 LMISCDESS--EIWHQDVSRNQ-----THHCRFSTSRSTTEMKDSLVNRKRLK------S 165

Query: 177 QSDLDLRLTPRFTGKVPP------------EVRR--RPGTPSMNSEESGTTTCFESGLT- 221
            SDLDL++    T   P             +V +  RPG+P   SEES TT+C+E+G+  
Sbjct: 166 DSDLDLQVNHGLTLTAPAVPVPFLPPSSFCKVVKGDRPGSP---SEESVTTSCWENGMRG 222

Query: 222 DHRYLNGAEERKLLNLFV 239
           D++      E+KLLNLFV
Sbjct: 223 DNKQKRNKGEKKLLNLFV 240

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZW96|LBD40_ARATH LOB domain-containing protein 40 OS=Arabidopsis thaliana GN=LBD40 PE=2 SV=1

 Score =  178 bits (451), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 77/110 (70%), Positives = 96/110 (87%)

Query: 1   MSCNGCRVLRKGCSESCILRPCLQWIESPESQGHATVFVAKFFGRAGLMSFISAVPESQR 60
           MSCNGCRVLRKGCSE+C +RPCLQWI+S ESQ +ATVF+AKF+GRAGLM+ ++  P+  R
Sbjct: 3   MSCNGCRVLRKGCSENCSIRPCLQWIKSAESQANATVFLAKFYGRAGLMNLLNTGPDHLR 62

Query: 61  PALFQSLLYEACGRTVNPVNGAVGLLWTGNWHVCQAAVETVLRGGTLRPV 110
           PA+F+SLLYEACGR VNP+ G+VGLLW+GNWH+CQAAVE V+RG  + P+
Sbjct: 63  PAIFRSLLYEACGRIVNPIYGSVGLLWSGNWHLCQAAVEAVMRGSPVTPI 112

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M886|LBD41_ARATH LOB domain-containing protein 41 OS=Arabidopsis thaliana GN=LBD41 PE=2 SV=1

 Score =  172 bits (436), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 74/121 (61%), Positives = 95/121 (78%)

Query: 1   MSCNGCRVLRKGCSESCILRPCLQWIESPESQGHATVFVAKFFGRAGLMSFISAVPESQR 60
           MSCNGCRVLRKGCSE C +RPCL WI+SPE+Q +ATVF+AKF+GRAGLM+ I+A P   R
Sbjct: 3   MSCNGCRVLRKGCSEDCSIRPCLAWIKSPEAQANATVFLAKFYGRAGLMNLINAGPNHLR 62

Query: 61  PALFQSLLYEACGRTVNPVNGAVGLLWTGNWHVCQAAVETVLRGGTLRPVPELLNSCGGS 120
           P +F+SLL+EACGR VNP+ G+VGLLW+GNW +CQ AVE V++G  ++ +     + G  
Sbjct: 63  PGIFRSLLHEACGRIVNPIYGSVGLLWSGNWQLCQDAVEAVMKGEPVKEIATDAATIGQG 122

Query: 121 P 121
           P
Sbjct: 123 P 123

Arabidopsis thaliana (taxid: 3702)

>sp|Q9CA30|LBD42_ARATH LOB domain-containing protein 42 OS=Arabidopsis thaliana GN=LBD42 PE=2 SV=1

 Score =  164 bits (416), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 70/111 (63%), Positives = 92/111 (82%)

Query: 1   MSCNGCRVLRKGCSESCILRPCLQWIESPESQGHATVFVAKFFGRAGLMSFISAVPESQR 60
           +SCNGCRVLRKGC++ C +RPCLQWI+S +SQ +AT+F+AKF+GRAGL++ I + P+  R
Sbjct: 3   ISCNGCRVLRKGCNQDCTIRPCLQWIKSADSQANATLFLAKFYGRAGLLNLIESGPDHLR 62

Query: 61  PALFQSLLYEACGRTVNPVNGAVGLLWTGNWHVCQAAVETVLRGGTLRPVP 111
           PA+F+SLLYEACGR VNPV+G+VGL+W+GNW  CQAAV+ VL G  +   P
Sbjct: 63  PAIFRSLLYEACGRIVNPVDGSVGLMWSGNWAQCQAAVDAVLNGLPITHTP 113

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LQR0|LBD1_ARATH LOB domain-containing protein 1 OS=Arabidopsis thaliana GN=LBD1 PE=2 SV=1

 Score = 60.5 bits (145), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 40/150 (26%), Positives = 65/150 (43%), Gaps = 15/150 (10%)

Query: 3   CNGCRVLRKGCSESCILRPCLQWIESPESQGHATVFVAKFFGRAGLMSFISAVPESQRPA 62
           C  C++LR+ C+E C+L P       P +         + FG + ++ F+  +PESQR  
Sbjct: 34  CAACKILRRRCAERCVLAPYF-----PPTDPAKFTIAHRVFGASNIIKFLQELPESQRTD 88

Query: 63  LFQSLLYEACGRTVNPVNGAVGLLWTGNWHV-------CQAAVETVLRGGTLRPVPELLN 115
              S++YEA  R  +PV G  G ++     V        +A VE V        + EL+ 
Sbjct: 89  AVNSMVYEAEARIRDPVYGCAGAIYHLQRQVSELQAQLAKAQVEMVNMQFQRSNLLELIY 148

Query: 116 SCGGSPTPTSDEVSEAEVTCTDMSRLQDRS 145
           +         D +S       D+  L+D+S
Sbjct: 149 NMDQQQKQEQDNMS---FESNDLGFLEDKS 175

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SK08|LBD11_ARATH LOB domain-containing protein 11 OS=Arabidopsis thaliana GN=LBD11 PE=2 SV=2

 Score = 58.9 bits (141), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 26/85 (30%), Positives = 44/85 (51%), Gaps = 5/85 (5%)

Query: 3   CNGCRVLRKGCSESCILRPCLQWIESPESQGHATVFVAKFFGRAGLMSFISAVPESQRPA 62
           C  C++LR+ C++ C+L P       P +         + FG + ++ F+  +PESQR  
Sbjct: 56  CAACKILRRRCADKCVLAPYF-----PPTDPAKFTIAHRVFGASNIIKFLQELPESQRTD 110

Query: 63  LFQSLLYEACGRTVNPVNGAVGLLW 87
              S++YEA  R  +PV G  G ++
Sbjct: 111 AVNSMVYEAGARMRDPVYGCAGAIY 135

Arabidopsis thaliana (taxid: 3702)

>sp|O64836|LBD10_ARATH LOB domain-containing protein 10 OS=Arabidopsis thaliana GN=LBD10 PE=2 SV=1

 Score = 57.8 bits (138), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 43/84 (51%), Gaps = 5/84 (5%)

Query: 3  CNGCRVLRKGCSESCILRPCLQWIESPESQGHATVFVAKFFGRAGLMSFISAVPESQRPA 62
          C  C++LR+ C++ C+  P       P +     +FV + FG + +   ++ +P  QR  
Sbjct: 6  CAACKLLRRKCTQECVFAPYF-----PPTNPQKFIFVHRVFGASNVTKILNDLPPDQRED 60

Query: 63 LFQSLLYEACGRTVNPVNGAVGLL 86
             SL YEA  R  +P+ G VGL+
Sbjct: 61 TVNSLFYEAEARIRDPIYGCVGLI 84

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FKZ3|LBD36_ARATH LOB domain-containing protein 36 OS=Arabidopsis thaliana GN=LBD36 PE=2 SV=1

 Score = 56.6 bits (135), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 41/84 (48%), Gaps = 5/84 (5%)

Query: 3  CNGCRVLRKGCSESCILRPCLQWIESPESQGHATVFVAKFFGRAGLMSFISAVPESQRPA 62
          C  C+ LR+ C++ C+  P       P  Q     FV K FG + +   ++ +  +QR  
Sbjct: 8  CAACKFLRRKCTQECVFAPYF-----PPDQPQKFAFVHKVFGASNVAKLLNELASNQRED 62

Query: 63 LFQSLLYEACGRTVNPVNGAVGLL 86
             SL YEA  R  +PV G VGL+
Sbjct: 63 AVNSLFYEAEARLRDPVYGCVGLI 86

Controls the proximal-distal patterning in petals and the adaxial-abaxial determination of leaves. Involved in the repression of the homeobox gene BP.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	239
337733632	239	hypothetical protein [Citrus trifoliata]	0.995	0.995	0.978	1e-132
255568563	246	LOB domain-containing protein, putative	0.970	0.943	0.743	3e-96
449448242	233	PREDICTED: LOB domain-containing protein	0.958	0.982	0.720	1e-90
225438968	228	PREDICTED: LOB domain-containing protein	0.912	0.956	0.734	3e-86
224074243	238	predicted protein [Populus trichocarpa]	0.970	0.974	0.734	1e-85
356496973	243	PREDICTED: LOB domain-containing protein	0.974	0.958	0.686	3e-84
224081821	242	predicted protein [Populus trichocarpa]	0.995	0.983	0.695	5e-84
356541649	240	PREDICTED: LOB domain-containing protein	0.970	0.966	0.684	6e-84
118489971	242	unknown [Populus trichocarpa x Populus d	0.995	0.983	0.691	2e-83
110749713	231	lateral organ boundaries domain protein	0.953	0.987	0.673	3e-78

>gi|337733632|gb|AEI72265.1| hypothetical protein [Citrus trifoliata]

 Score =  476 bits (1226), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 233/238 (97%), Positives = 237/238 (99%)

Query: 1   MSCNGCRVLRKGCSESCILRPCLQWIESPESQGHATVFVAKFFGRAGLMSFISAVPESQR 60
           MSCNGCRVLRKGCSESCILRPCLQWIESPESQGHATVFVAKFFGRAGLMSFISAVPESQR
Sbjct: 1   MSCNGCRVLRKGCSESCILRPCLQWIESPESQGHATVFVAKFFGRAGLMSFISAVPESQR 60

Query: 61  PALFQSLLYEACGRTVNPVNGAVGLLWTGNWHVCQAAVETVLRGGTLRPVPELLNSCGGS 120
           PALFQSLLYEACGRTVNPVNGAVGLLWTGNWHVCQAAVETVLRGGTLRPV ELL+SCGGS
Sbjct: 61  PALFQSLLYEACGRTVNPVNGAVGLLWTGNWHVCQAAVETVLRGGTLRPVLELLSSCGGS 120

Query: 121 PTPTSDEVSEAEVTCTDMSRLQDRSFPSSHCRFSSSRSKVSPAKRKRVEESAMKLQQSDL 180
           PTPTSDE+SEAEVTCTDMSRLQDRSFPSSHCRFSSSRSKVSPAKRKRVEESAMKLQQSDL
Sbjct: 121 PTPTSDELSEAEVTCTDMSRLQDRSFPSSHCRFSSSRSKVSPAKRKRVEESAMKLQQSDL 180

Query: 181 DLRLTPRFTGKVPPEVRRRPGTPSMNSEESGTTTCFESGLTDHRYLNGAEERKLLNLF 238
           DLRLTPRFTGKVPP+VRRRPGTPSMNSEESGTTTCFESGLTDHR+LNGAEERKLLNLF
Sbjct: 181 DLRLTPRFTGKVPPDVRRRPGTPSMNSEESGTTTCFESGLTDHRHLNGAEERKLLNLF 238

Source: Citrus trifoliata

Species: Citrus trifoliata

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255568563|ref|XP_002525255.1| LOB domain-containing protein, putative [Ricinus communis] gi|223535413|gb|EEF37083.1| LOB domain-containing protein, putative [Ricinus communis]

 Score =  357 bits (915), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 188/253 (74%), Positives = 204/253 (80%), Gaps = 21/253 (8%)

Query: 1   MSCNGCRVLRKGCSESCILRPCLQWIESPESQGHATVFVAKFFGRAGLMSFISAVPESQR 60
           MSCNGCRVLRKGCSE+CILRPCLQWIESPE+QGHATVFVAKFFGRAGLMSFISAVPE+QR
Sbjct: 1   MSCNGCRVLRKGCSETCILRPCLQWIESPEAQGHATVFVAKFFGRAGLMSFISAVPETQR 60

Query: 61  PALFQSLLYEACGRTVNPVNGAVGLLWTGNWHVCQAAVETVLRGGTLRPVPELLNSCGGS 120
           PALFQSLL+EACGRTVNPVNGAVGLLWTGNWHVCQAAVETVLRGGTLRP+PELL   G S
Sbjct: 61  PALFQSLLFEACGRTVNPVNGAVGLLWTGNWHVCQAAVETVLRGGTLRPMPELL--AGSS 118

Query: 121 PTPTSDEVSEAEVTCTDMSRLQDRSFPSSHCRFSSSRSKVSPAKRKRVEES--------- 171
           P+P SDE SEAEVTCTDM +LQD   P+ H RFS+SRSK SP KRKR+  +         
Sbjct: 119 PSPASDETSEAEVTCTDMWKLQD---PNPHSRFSNSRSKSSP-KRKRINNNETLTINKQQ 174

Query: 172 ---AMKLQQSDLDLRLTPRFTGKVPPEV--RRRPGTPSMNSEESGTTTCFESGLTDHRYL 226
               + L  +DLDLRLTP F+ K  P     RRPGTPSMNSEES TTTCF+SG  D  Y 
Sbjct: 175 LPKPLYLPSNDLDLRLTPSFSPKNSPRKPELRRPGTPSMNSEESVTTTCFDSGFGDQ-YG 233

Query: 227 NGAEERKLLNLFV 239
           NG  +RKLLNLFV
Sbjct: 234 NGGGDRKLLNLFV 246

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449448242|ref|XP_004141875.1| PREDICTED: LOB domain-containing protein 38-like [Cucumis sativus] gi|449519096|ref|XP_004166571.1| PREDICTED: LOB domain-containing protein 38-like [Cucumis sativus]

 Score =  338 bits (867), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 175/243 (72%), Positives = 200/243 (82%), Gaps = 14/243 (5%)

Query: 1   MSCNGCRVLRKGCSESCILRPCLQWIESPESQGHATVFVAKFFGRAGLMSFISAVPESQR 60
           MSCNGCRVLRKGCSESCILRPCLQWI++ E+QGHATVFVAKFFGRAGLMSFISAVPESQR
Sbjct: 1   MSCNGCRVLRKGCSESCILRPCLQWIDTSEAQGHATVFVAKFFGRAGLMSFISAVPESQR 60

Query: 61  PALFQSLLYEACGRTVNPVNGAVGLLWTGNWHVCQAAVETVLRGGTLRPVPELLNSCGGS 120
           P+LFQSLL+EACGRTVNPVNGAVGLLWTGNWHVCQAAV+TVLRGGTLRP+ + L    GS
Sbjct: 61  PSLFQSLLFEACGRTVNPVNGAVGLLWTGNWHVCQAAVDTVLRGGTLRPINDFL--AAGS 118

Query: 121 PTPTSDEVSEAEVTCTDMSRLQDRSFPSSHCRFSSSRSKVSPAKRKRVEESAMKLQQSDL 180
           P   SD+ SE EV CTDM +++D S+P+S  RFS+SRS++SP KRKR EE++ K Q +DL
Sbjct: 119 PNLASDDTSETEVGCTDMWKIRD-SYPNS--RFSNSRSRLSP-KRKRSEEASTKHQLNDL 174

Query: 181 DLRLTPRFTGKVPPEVRRRPGTPSMNSEESGTTTCFESGLTDHRYLN----GAEERKLLN 236
           DLRLTP F    P +   R  TPSMNSEES TTTCFESGL D+ + +    G  +RKLLN
Sbjct: 175 DLRLTPTF----PAKSTLRAATPSMNSEESETTTCFESGLGDNHHHHYPEEGVAQRKLLN 230

Query: 237 LFV 239
           LFV
Sbjct: 231 LFV 233

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225438968|ref|XP_002284296.1| PREDICTED: LOB domain-containing protein 38 [Vitis vinifera] gi|296087336|emb|CBI33710.3| unnamed protein product [Vitis vinifera]

 Score =  323 bits (828), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 183/249 (73%), Positives = 196/249 (78%), Gaps = 31/249 (12%)

Query: 1   MSCNGCRVLRKGCSESCILRPCLQWIESPESQGHATVFVAKFFGRAGLMSFISAVPESQR 60
           MSCNGCRVLRKGCSESCILRPCLQWIES ESQGHATVFVAKFFGRAGLMSFISAVPE+QR
Sbjct: 1   MSCNGCRVLRKGCSESCILRPCLQWIESAESQGHATVFVAKFFGRAGLMSFISAVPENQR 60

Query: 61  PALFQSLLYEACGRTVNPVNGAVGLLWTGNWHVCQAAVETVLRGGTLRPVPELLNSCGGS 120
           PALF+SLLYEACGRTVNPVNGAVGLL TGNWHVCQAA+ETVLRGGTLR +PELLN   G 
Sbjct: 61  PALFRSLLYEACGRTVNPVNGAVGLLGTGNWHVCQAAMETVLRGGTLRAMPELLN---GV 117

Query: 121 PTPTSDEVSEAEVTCTDMSRLQDRSFPSSHCRFSSSRSKVSPAKRKRVEESAMKLQQSDL 180
            TP  DE SEAEVTCTDM +L+D +        SSSRSKV   KRKR+EE A K+Q +DL
Sbjct: 118 STPECDEASEAEVTCTDMFKLRDPN--------SSSRSKV--PKRKRLEE-ASKVQCTDL 166

Query: 181 DLRLTPRFTGKVP----------PEVRRRPGTPSMNSEESGTTTCFESGLTDHRYLNGAE 230
           DLRLTP  TGK+           PE  RRPGTPSMNSEES TTTCFE   T H   +   
Sbjct: 167 DLRLTPGLTGKISSRGLGAMSYLPET-RRPGTPSMNSEESVTTTCFE---TPH---SPEG 219

Query: 231 ERKLLNLFV 239
           ERKLLNLF+
Sbjct: 220 ERKLLNLFL 228

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224074243|ref|XP_002304317.1| predicted protein [Populus trichocarpa] gi|222841749|gb|EEE79296.1| predicted protein [Populus trichocarpa]

 Score =  322 bits (824), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 180/245 (73%), Positives = 202/245 (82%), Gaps = 13/245 (5%)

Query: 1   MSCNGCRVLRKGCSESCILRPCLQWIESPESQGHATVFVAKFFGRAGLMSFISAVPESQR 60
           MSCNGCRVLRKGCSE+CILRPCLQWIESPE+QGHATVFVAKFFGRAGLMSFISAVPE+QR
Sbjct: 1   MSCNGCRVLRKGCSENCILRPCLQWIESPEAQGHATVFVAKFFGRAGLMSFISAVPENQR 60

Query: 61  PALFQSLLYEACGRTVNPVNGAVGLLWTGNWHVCQAAVETVLRGGTLRPVPELLNSCGGS 120
           P+LFQSLL+EACGRTVNPVNGA GLLWTGNWHVCQAAVETVLRGGTL+P+PELL   GGS
Sbjct: 61  PSLFQSLLFEACGRTVNPVNGAAGLLWTGNWHVCQAAVETVLRGGTLQPMPELLTGGGGS 120

Query: 121 PTPTSDEVSEAEVTCTDMSRLQDRSFPSSHCRFSSSRSKVSPAKRKRVEES-AMKLQQSD 179
           P+P+SDE SE EV CTD+ +LQD + P+ H RFS SRS++SP KRKR EE  A+K+Q +D
Sbjct: 121 PSPSSDEASEVEVACTDIWKLQDPN-PNHHPRFSISRSRLSP-KRKRTEEPVAVKVQHND 178

Query: 180 LDLRLTPRFTGKVPPEVR--RRPGTPSMNSEESGTTT--CFES-GLTDHRYLNGAEERKL 234
           LDL LTP F+ K  P  +  RRPGTPSMNS ES TT   CF+S GL D        E KL
Sbjct: 179 LDLGLTPSFSLKGFPYKQQIRRPGTPSMNSAESVTTNTACFDSAGLGDE-----GGETKL 233

Query: 235 LNLFV 239
           LNLF+
Sbjct: 234 LNLFL 238

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356496973|ref|XP_003517339.1| PREDICTED: LOB domain-containing protein 38-like [Glycine max]

 Score =  317 bits (811), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 171/249 (68%), Positives = 195/249 (78%), Gaps = 16/249 (6%)

Query: 1   MSCNGCRVLRKGCSESCILRPCLQWIESPESQGHATVFVAKFFGRAGLMSFISAVPESQR 60
           MSCNGCRVLRKGCSESCILRPCLQWI++PE+QGHATVFVAKFFGRA LMSFIS VPE QR
Sbjct: 1   MSCNGCRVLRKGCSESCILRPCLQWIDTPEAQGHATVFVAKFFGRADLMSFISNVPEPQR 60

Query: 61  PALFQSLLYEACGRTVNPVNGAVGLLWTGNWHVCQAAVETVLRGGTLRPVPELLNSCGGS 120
           PALFQSLL+EACGRTVNPVNGAVGLLWTGNWHVCQAAVETVLRGGT+RP+PELL     +
Sbjct: 61  PALFQSLLFEACGRTVNPVNGAVGLLWTGNWHVCQAAVETVLRGGTVRPMPELLGL--DA 118

Query: 121 PTPTSDEVSEAEVTCTDMSRLQD--RSFPSSHCRFSSSRSKV--SPAKRKRVEESA-MKL 175
           PTPT+D+ SE EVTCTD  R++D   +FP +  RF  SRS    S  KRKR EE A ++ 
Sbjct: 119 PTPTADDASEGEVTCTDKWRVRDPNPNFPGT--RFPGSRSDKAGSGGKRKRFEELAKLQT 176

Query: 176 QQSDLDLRLTPRFTGKVPP----EVRRRPGTPSMNSEESGTTT-CFESGLTDHRYLNGAE 230
             +DL+LRLTP F          +  R PG+PSMNSEESGTTT C ESG+ DH   +G  
Sbjct: 177 ATTDLNLRLTPSFLQNAASYGCRQEIRWPGSPSMNSEESGTTTACLESGIGDHYAHDG-- 234

Query: 231 ERKLLNLFV 239
           +RK+LNLF+
Sbjct: 235 DRKVLNLFI 243

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224081821|ref|XP_002306497.1| predicted protein [Populus trichocarpa] gi|222855946|gb|EEE93493.1| predicted protein [Populus trichocarpa]

 Score =  316 bits (810), Expect = 5e-84,   Method: Compositional matrix adjust.
 Identities = 169/243 (69%), Positives = 191/243 (78%), Gaps = 5/243 (2%)

Query: 1   MSCNGCRVLRKGCSESCILRPCLQWIESPESQGHATVFVAKFFGRAGLMSFISAVPESQR 60
           MSCNGCRVLRKGCSE+CILRPCLQWIESPE+QGHATVFVAKFFGRAGLMSFIS+VPE QR
Sbjct: 1   MSCNGCRVLRKGCSENCILRPCLQWIESPEAQGHATVFVAKFFGRAGLMSFISSVPEDQR 60

Query: 61  PALFQSLLYEACGRTVNPVNGAVGLLWTGNWHVCQAAVETVLRGGTLRPVPELLN-SCGG 119
           P+LFQSLL+EACGRTVNPVNGAVGLLWTGNWHVCQAAVETVLRGGTLRP+P+LL      
Sbjct: 61  PSLFQSLLFEACGRTVNPVNGAVGLLWTGNWHVCQAAVETVLRGGTLRPMPDLLTGGGSP 120

Query: 120 SPTPTSDEVSEAEVTCTDMSRLQD-RSFPSSHCRFSSSRSKVSPAKRKRVEESAMKLQQS 178
           S +P SDE SE EV CTD+ +LQD    P  H RFS+SRS+VS  ++   E   + ++  
Sbjct: 121 SSSPPSDEASEFEVACTDIWKLQDPNPNPIHHSRFSNSRSRVSSKRKGTEEPMVVNMRHD 180

Query: 179 DLDLRLTPRFTGKVPPEVRRRPGTPSMNSEESGTT--TCFESGLTDHRYLNGAEERKLLN 236
           DLDL LTP  + K   E+  RPGTPSMNSEES TT  TCF+S     +Y NG  E KLLN
Sbjct: 181 DLDLLLTPSTSQKGFAEI-CRPGTPSMNSEESVTTNATCFDSAGFGDQYGNGGGETKLLN 239

Query: 237 LFV 239
           LF+
Sbjct: 240 LFL 242

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356541649|ref|XP_003539286.1| PREDICTED: LOB domain-containing protein 38-like [Glycine max]

 Score =  316 bits (809), Expect = 6e-84,   Method: Compositional matrix adjust.
 Identities = 169/247 (68%), Positives = 193/247 (78%), Gaps = 15/247 (6%)

Query: 1   MSCNGCRVLRKGCSESCILRPCLQWIESPESQGHATVFVAKFFGRAGLMSFISAVPESQR 60
           MSCNGCRVLRKGCSESCILRPCLQWI++PE+QGHATVFVAKFFGRA LMSFIS VPE QR
Sbjct: 1   MSCNGCRVLRKGCSESCILRPCLQWIDTPEAQGHATVFVAKFFGRADLMSFISNVPEPQR 60

Query: 61  PALFQSLLYEACGRTVNPVNGAVGLLWTGNWHVCQAAVETVLRGGTLRPVPELLNSCGGS 120
           PALFQSLL+EACGRTVNPVNGAVGLLWTGNWHVCQAAVETVLRGGT+RP+PEL      +
Sbjct: 61  PALFQSLLFEACGRTVNPVNGAVGLLWTGNWHVCQAAVETVLRGGTVRPMPELFGL--DA 118

Query: 121 PTPTSDEVSEAEVTCTDMSRLQDRSFPSSHCRFSSSRSK--VSPAKRKRVEESA-MKLQQ 177
           PTPT+D+ SE EVTCTD  R++D   P+ + RF  SRS    S  KRKR EE A ++   
Sbjct: 119 PTPTTDDASEGEVTCTDKWRVRD---PNPNFRFPGSRSDKGSSGGKRKRFEELAKLQTAT 175

Query: 178 SDLDLRLTPRFTGKVPP----EVRRRPGTPSMNSEESGTTT-CFESGLTDHRYLNGAEER 232
           +DL+LRLTP F          +  R PG+PSMNSEESGTTT C ESG+ DH   +G  +R
Sbjct: 176 TDLNLRLTPSFLQNAANFGCRQEIRWPGSPSMNSEESGTTTACLESGIGDHYAPDG--DR 233

Query: 233 KLLNLFV 239
           K+LNLF+
Sbjct: 234 KVLNLFI 240

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118489971|gb|ABK96782.1| unknown [Populus trichocarpa x Populus deltoides]

 Score =  314 bits (804), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 168/243 (69%), Positives = 191/243 (78%), Gaps = 5/243 (2%)

Query: 1   MSCNGCRVLRKGCSESCILRPCLQWIESPESQGHATVFVAKFFGRAGLMSFISAVPESQR 60
           MSCNGCRVLRKGCSE+CILRPCLQWIESPE+QGHATVFVAKFFGRAGLMSFIS+VPE QR
Sbjct: 1   MSCNGCRVLRKGCSENCILRPCLQWIESPEAQGHATVFVAKFFGRAGLMSFISSVPEDQR 60

Query: 61  PALFQSLLYEACGRTVNPVNGAVGLLWTGNWHVCQAAVETVLRGGTLRPVPELLN-SCGG 119
           P+LFQSLL+EACGRTVNPVNGAVGLLWTGNWHVCQAAVETVLRGGTLRP+P+LL      
Sbjct: 61  PSLFQSLLFEACGRTVNPVNGAVGLLWTGNWHVCQAAVETVLRGGTLRPMPDLLTGGGSP 120

Query: 120 SPTPTSDEVSEAEVTCTDMSRLQD-RSFPSSHCRFSSSRSKVSPAKRKRVEESAMKLQQS 178
           S +P SDE SE EV CTD+ +LQD    P  H RFS+SRS+VS  ++   E   + ++ +
Sbjct: 121 SSSPPSDEASEFEVACTDIWKLQDPNPNPIHHSRFSNSRSRVSSKRKGTEEPMVVNMRHN 180

Query: 179 DLDLRLTPRFTGKVPPEVRRRPGTPSMNSEESGTT--TCFESGLTDHRYLNGAEERKLLN 236
           DLDL LT   + K   E+  RPGTPSMNSEES TT  TCF+S     +Y NG  E KLLN
Sbjct: 181 DLDLLLTSSTSQKGFAEI-CRPGTPSMNSEESVTTNATCFDSAGFGDQYGNGGGETKLLN 239

Query: 237 LFV 239
           LF+
Sbjct: 240 LFL 242

Source: Populus trichocarpa x Populus deltoides

Species: Populus trichocarpa x Populus deltoides

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|110749713|gb|ABG90382.1| lateral organ boundaries domain protein [Caragana korshinskii]

 Score =  297 bits (760), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 163/242 (67%), Positives = 188/242 (77%), Gaps = 14/242 (5%)

Query: 1   MSCNGCRVLRKGCSESCILRPCLQWIESPESQGHATVFVAKFFGRAGLMSFISAVPESQR 60
           MSCNGCRVLRKGCSESCILRPCLQW+E+PE+QGHATVFVAKFFGRAGLMSF+S VPE+QR
Sbjct: 1   MSCNGCRVLRKGCSESCILRPCLQWLENPEAQGHATVFVAKFFGRAGLMSFLSNVPETQR 60

Query: 61  PALFQSLLYEACGRTVNPVNGAVGLLWTGNWHVCQAAVETVLRGGTLRPVPELLNSCGGS 120
           PALFQSLL+EACGRTVNPVNGAVGLLWTGNWHVCQAAVETVL+GGTLRP+PE  ++   +
Sbjct: 61  PALFQSLLFEACGRTVNPVNGAVGLLWTGNWHVCQAAVETVLQGGTLRPLPE--HTLLDA 118

Query: 121 PTPTSDEVSEAEVTCTDMSRLQDRSFPSSHCRFSSSRS--KVSP-AKRKRVEESAMKLQQ 177
           P   +DE SEAE  CT + R++D   P+ +CR + SRS  KVS   KRKR EE       
Sbjct: 119 PPAATDEASEAEDACTGIWRIRD---PNPNCRPNGSRSNNKVSTGGKRKRSEELVKIPAA 175

Query: 178 SDLDLRLTPRFTGKVPPEVRRRPGTPSMNSEESGTTTCFESGLTDHRYLNGAEERKLLNL 237
           ++LDLRLTP F  K      RRPG+PSMN+EES TTT   +GL D     G  ERK+LNL
Sbjct: 176 TNLDLRLTPIFLQK--ESESRRPGSPSMNTEESVTTTA--TGLGDSWGHGG--ERKVLNL 229

Query: 238 FV 239
           F+
Sbjct: 230 FI 231

Source: Caragana korshinskii

Species: Caragana korshinskii

Genus: Caragana

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	239
TAIR|locus:2158247	250	LBD37 "LOB domain-containing p	0.983	0.94	0.602	2.1e-70
TAIR|locus:2083063	247	LBD38 "LOB domain-containing p	0.970	0.939	0.607	1e-68
TAIR|locus:2120071	240	LBD39 "AT4G37540" [Arabidopsis	0.966	0.962	0.588	6.9e-63
TAIR|locus:2019698	233	LBD40 "AT1G67100" [Arabidopsis	0.460	0.472	0.7	1.2e-42
TAIR|locus:2076829	263	LBD41 "LOB domain-containing p	0.460	0.418	0.663	1.4e-39
TAIR|locus:2201267	233	LBD42 "AT1G68510" [Arabidopsis	0.464	0.476	0.630	3.4e-38
TAIR|locus:2026611	190	LBD1 "LOB domain-containing pr	0.334	0.421	0.329	7.5e-09
TAIR|locus:2056578	232	LBD11 "LOB domain-containing p	0.334	0.344	0.317	1.2e-07
TAIR|locus:2074648	165	LBD21 "LOB domain-containing p	0.334	0.484	0.341	1.3e-07
TAIR|locus:2126866	220	LBD31 "LOB domain-containing p	0.497	0.540	0.3	3.3e-07

TAIR|locus:2158247 LBD37 "LOB domain-containing protein 37" [Arabidopsis thaliana (taxid:3702)]

 Score = 713 (256.0 bits), Expect = 2.1e-70, P = 2.1e-70
 Identities = 153/254 (60%), Positives = 171/254 (67%)

Query:     1 MSCNGCRVLRKGCSESCILRPCLQWIESPESQGHATVFVAKFFGRAGLMSFISAVPESQR 60
             MSCNGCRVLRKGCSE+CILRPC+QWIE+ ++QGHATVFVAKFFGRAGLMSFISAVP+SQR
Sbjct:     1 MSCNGCRVLRKGCSENCILRPCIQWIETADAQGHATVFVAKFFGRAGLMSFISAVPDSQR 60

Query:    61 PALFQSLLYEACGRTVNPVNGAVGLLWTGNWHVCQAAVETVLRGGTLRPVPELLNSCGGS 120
             PALFQSLLYEACGRTVNPVNGA+G+LWTGNW++CQAAVETVLRGG+LRP+PELL   GG 
Sbjct:    61 PALFQSLLYEACGRTVNPVNGAIGMLWTGNWNICQAAVETVLRGGSLRPIPELLTHGGGF 120

Query:   121 ---PTPTSDEVSEAEVTCTDMSRLQ--DXXXXXXXXXXXXXXXXXXXXXXXXXEESAMKL 175
                P+PTS+E SE    CT+M  LQ  D                              +L
Sbjct:   121 AGFPSPTSEEASEI---CTEMLNLQQNDSTDRNIYHHSRFSSSRSRSTMDSSSPTKRKRL 177

Query:   176 QQSD-----LDLRLTPRFTGK--VPPEVRRRPGTPSMNSEESGTTTCFESGLTDHR--YL 226
                D     LDL L P F  K   P   RRR  TPSMNSE+SGTTT   +   D    Y 
Sbjct:   178 SSEDQPSSELDLSLIPNFPIKQATPSSTRRRSVTPSMNSEDSGTTTT-TTAFCDKGDVYG 236

Query:   227 NGA-EERKLLNLFV 239
             NG  E  KLLNLFV
Sbjct:   237 NGGGETTKLLNLFV 250

GO:0005634 "nucleus" evidence=ISM

GO:0006807 "nitrogen compound metabolic process" evidence=IMP

GO:0060776 "simple leaf morphogenesis" evidence=IMP

TAIR|locus:2083063 LBD38 "LOB domain-containing protein 38" [Arabidopsis thaliana (taxid:3702)]

 Score = 697 (250.4 bits), Expect = 1.0e-68, P = 1.0e-68
 Identities = 153/252 (60%), Positives = 170/252 (67%)

Query:     1 MSCNGCRVLRKGCSESCILRPCLQWIESPESQGHATVFVAKFFGRAGLMSFISAVPESQR 60
             MSCNGCRVLRKGCSE+CILRPC+QWIESPE+QGHATVFVAKFFGRAGLMSFISAVPESQ 
Sbjct:     1 MSCNGCRVLRKGCSENCILRPCIQWIESPEAQGHATVFVAKFFGRAGLMSFISAVPESQC 60

Query:    61 PALFQSLLYEACGRTVNPVNGAVGLLWTGNWHVCQAAVETVLRGGTLRPVPELLNSCG-- 118
             PALFQSLLYEACGRTVNPVNGAVGLLWTGNW+VCQAAVETVLRGG+L+P+PELLN  G  
Sbjct:    61 PALFQSLLYEACGRTVNPVNGAVGLLWTGNWNVCQAAVETVLRGGSLKPIPELLNGGGFA 120

Query:   119 GSPTPTSDEVSEAEVTCTDMSRLQ--DXXXXXXXXXXXXXXXXXXXXXXXXXEESAMKL- 175
             G P+PTSDE SE    CT+M  L+  D                              +L 
Sbjct:   121 GFPSPTSDEASEI---CTEMLNLRKADDSGDRNIYHHCRFSSSRSRSRSTASPPKRKRLS 177

Query:   176 --QQ--SDLDLRLTPRFTGKVPPEVRRRPGTPSMNSEESGTTTCFESGLTDHRYLN---- 227
               QQ  S+LDL L P +  K  P    +  TPSM SEES TT  F++     RY+     
Sbjct:   178 SEQQPSSELDLSLIPIYPIKTLPF---KEDTPSMYSEESVTTVSFQNNNAGDRYVRCGGG 234

Query:   228 -GAEERKLLNLF 238
              G    KLLNLF
Sbjct:   235 GGGATTKLLNLF 246

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0010167 "response to nitrate" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

TAIR|locus:2120071 LBD39 "AT4G37540" [Arabidopsis thaliana (taxid:3702)]

 Score = 642 (231.1 bits), Expect = 6.9e-63, P = 6.9e-63
 Identities = 146/248 (58%), Positives = 168/248 (67%)

Query:     1 MSCNGCRVLRKGCSESCILRPCLQWIESPESQGHATVFVAKFFGRAGLMSFISAVPESQR 60
             MSCNGCRVLRKGCSE+CILRPCLQWIES ESQGHATVFVAKFFGRAGLMSFIS+VPE QR
Sbjct:     1 MSCNGCRVLRKGCSETCILRPCLQWIESAESQGHATVFVAKFFGRAGLMSFISSVPELQR 60

Query:    61 PALFQSLLYEACGRTVNPVNGAVGLLWTGNWHVCQAAVETVLRGGTLRPVPELLNSCGGS 120
             PALFQSLL+EACGRTVNPVNGAVG+LWT NWHVCQAAVETVLRGGTLRP+ +LL S   S
Sbjct:    61 PALFQSLLFEACGRTVNPVNGAVGMLWTRNWHVCQAAVETVLRGGTLRPISDLLES--PS 118

Query:   121 PTPTSDEVSEAEVTCTDMSRLQDXXXXXXXXXXXXXXXXXXXXXXXXXEESAMKLQQSDL 180
                + DE SE  +   D+SR Q                           +S + LQ +  
Sbjct:   119 LMISCDESSE--IWHQDVSRNQTHHCRFSTSRSTTEMKDSLVNRKRLKSDSDLDLQVNH- 175

Query:   181 DLRLT-PRFTGK-VPPE-----VRR-RPGTPSMNSEESGTTTCFESGLT-DHRYLNGAEE 231
              L LT P      +PP      V+  RPG+PS   EES TT+C+E+G+  D++      E
Sbjct:   176 GLTLTAPAVPVPFLPPSSFCKVVKGDRPGSPS---EESVTTSCWENGMRGDNKQKRNKGE 232

Query:   232 RKLLNLFV 239
             +KLLNLFV
Sbjct:   233 KKLLNLFV 240

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0016126 "sterol biosynthetic process" evidence=RCA

TAIR|locus:2019698 LBD40 "AT1G67100" [Arabidopsis thaliana (taxid:3702)]

 Score = 451 (163.8 bits), Expect = 1.2e-42, P = 1.2e-42
 Identities = 77/110 (70%), Positives = 96/110 (87%)

Query:     1 MSCNGCRVLRKGCSESCILRPCLQWIESPESQGHATVFVAKFFGRAGLMSFISAVPESQR 60
             MSCNGCRVLRKGCSE+C +RPCLQWI+S ESQ +ATVF+AKF+GRAGLM+ ++  P+  R
Sbjct:     3 MSCNGCRVLRKGCSENCSIRPCLQWIKSAESQANATVFLAKFYGRAGLMNLLNTGPDHLR 62

Query:    61 PALFQSLLYEACGRTVNPVNGAVGLLWTGNWHVCQAAVETVLRGGTLRPV 110
             PA+F+SLLYEACGR VNP+ G+VGLLW+GNWH+CQAAVE V+RG  + P+
Sbjct:    63 PAIFRSLLYEACGRIVNPIYGSVGLLWSGNWHLCQAAVEAVMRGSPVTPI 112

GO:0009739 "response to gibberellin stimulus" evidence=IEP

GO:0009686 "gibberellin biosynthetic process" evidence=RCA

GO:0009740 "gibberellic acid mediated signaling pathway" evidence=RCA

TAIR|locus:2076829 LBD41 "LOB domain-containing protein 41" [Arabidopsis thaliana (taxid:3702)]

 Score = 422 (153.6 bits), Expect = 1.4e-39, P = 1.4e-39
 Identities = 75/113 (66%), Positives = 93/113 (82%)

Query:     1 MSCNGCRVLRKGCSESCILRPCLQWIESPESQGHATVFVAKFFGRAGLMSFISAVPESQR 60
             MSCNGCRVLRKGCSE C +RPCL WI+SPE+Q +ATVF+AKF+GRAGLM+ I+A P   R
Sbjct:     3 MSCNGCRVLRKGCSEDCSIRPCLAWIKSPEAQANATVFLAKFYGRAGLMNLINAGPNHLR 62

Query:    61 PALFQSLLYEACGRTVNPVNGAVGLLWTGNWHVCQAAVETVLRGGTLRPVPEL 113
             P +F+SLL+EACGR VNP+ G+VGLLW+GNW +CQ AVE V++G    PV E+
Sbjct:    63 PGIFRSLLHEACGRIVNPIYGSVGLLWSGNWQLCQDAVEAVMKG---EPVKEI 112

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IDA

GO:0001666 "response to hypoxia" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

TAIR|locus:2201267 LBD42 "AT1G68510" [Arabidopsis thaliana (taxid:3702)]

 Score = 409 (149.0 bits), Expect = 3.4e-38, P = 3.4e-38
 Identities = 70/111 (63%), Positives = 92/111 (82%)

Query:     1 MSCNGCRVLRKGCSESCILRPCLQWIESPESQGHATVFVAKFFGRAGLMSFISAVPESQR 60
             +SCNGCRVLRKGC++ C +RPCLQWI+S +SQ +AT+F+AKF+GRAGL++ I + P+  R
Sbjct:     3 ISCNGCRVLRKGCNQDCTIRPCLQWIKSADSQANATLFLAKFYGRAGLLNLIESGPDHLR 62

Query:    61 PALFQSLLYEACGRTVNPVNGAVGLLWTGNWHVCQAAVETVLRGGTLRPVP 111
             PA+F+SLLYEACGR VNPV+G+VGL+W+GNW  CQAAV+ VL G  +   P
Sbjct:    63 PAIFRSLLYEACGRIVNPVDGSVGLMWSGNWAQCQAAVDAVLNGLPITHTP 113

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2026611 LBD1 "LOB domain-containing protein 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 137 (53.3 bits), Expect = 7.5e-09, P = 7.5e-09
 Identities = 28/85 (32%), Positives = 45/85 (52%)

Query:     3 CNGCRVLRKGCSESCILRPCLQWIESPESQGHATVFVAKFFGRAGLMSFISAVPESQRPA 62
             C  C++LR+ C+E C+L P       P      T+   + FG + ++ F+  +PESQR  
Sbjct:    34 CAACKILRRRCAERCVLAPYFP----PTDPAKFTI-AHRVFGASNIIKFLQELPESQRTD 88

Query:    63 LFQSLLYEACGRTVNPVNGAVGLLW 87
                S++YEA  R  +PV G  G ++
Sbjct:    89 AVNSMVYEAEARIRDPVYGCAGAIY 113

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005739 "mitochondrion" evidence=IDA

TAIR|locus:2056578 LBD11 "LOB domain-containing protein 11" [Arabidopsis thaliana (taxid:3702)]

 Score = 136 (52.9 bits), Expect = 1.2e-07, P = 1.2e-07
 Identities = 27/85 (31%), Positives = 45/85 (52%)

Query:     3 CNGCRVLRKGCSESCILRPCLQWIESPESQGHATVFVAKFFGRAGLMSFISAVPESQRPA 62
             C  C++LR+ C++ C+L P       P      T+   + FG + ++ F+  +PESQR  
Sbjct:    56 CAACKILRRRCADKCVLAPYFP----PTDPAKFTI-AHRVFGASNIIKFLQELPESQRTD 110

Query:    63 LFQSLLYEACGRTVNPVNGAVGLLW 87
                S++YEA  R  +PV G  G ++
Sbjct:   111 AVNSMVYEAGARMRDPVYGCAGAIY 135

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2074648 LBD21 "LOB domain-containing protein 21" [Arabidopsis thaliana (taxid:3702)]

 Score = 122 (48.0 bits), Expect = 1.3e-07, P = 1.3e-07
 Identities = 29/85 (34%), Positives = 43/85 (50%)

Query:     2 SCNGCRVLRKGCSESCILRPCLQWIESPESQGHATVFVAKFFGRAGLMSFISAVPESQRP 61
             SC  C++L++ C+ +CI  P   +  S +    A V   K FG + +   +  VPE QR 
Sbjct:    11 SCAACKLLKRRCTPTCIFAP---YFRSSDLITFAKVH--KVFGASNVSKLLGEVPEEQRQ 65

Query:    62 ALFQSLLYEACGRTVNPVNGAVGLL 86
                 SL YEA  R  +PV G +G +
Sbjct:    66 ETVNSLAYEAEVRLKDPVYGCIGAI 90

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2126866 LBD31 "LOB domain-containing protein 31" [Arabidopsis thaliana (taxid:3702)]

 Score = 132 (51.5 bits), Expect = 3.3e-07, P = 3.3e-07
 Identities = 39/130 (30%), Positives = 54/130 (41%)

Query:     3 CNGCRVLRKGCSESCILRPCLQWIESPESQGHATVFVAKFFGRAGLMSFISAVPESQRPA 62
             C  C+ LR+ C   C+  P   + +S E   H T  V K FG +     +  +P S+R  
Sbjct:    12 CGACKFLRRKCVADCVFAP---YFDSVEGTSHFTA-VHKVFGASNASKLLMMIPASRRLD 67

Query:    63 LFQSLLYEACGRTVNPVNGAVGLLWTGNWHVCQAAVETVLRGGTLRPVPELLNSCGGSPT 122
                +L YEA  R  +PV G VG ++     V     E       L  V   L++  G P 
Sbjct:    68 AVVTLTYEALARLRDPVYGCVGHIFALQHQVMNLQAE-------LAYVQTQLSTLQGLPP 120

Query:   123 PTSDEVSEAE 132
             P S   S  E
Sbjct:   121 PNSQNNSRTE 130

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9SN23	LBD38_ARATH	No assigned EC number	0.6523	0.9623	0.9311	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	239
pfam03195	101	pfam03195, DUF260, Protein of unknown function DUF	3e-38

>gnl|CDD|190559 pfam03195, DUF260, Protein of unknown function DUF260

 Score =  128 bits (324), Expect = 3e-38
 Identities = 35/106 (33%), Positives = 48/106 (45%), Gaps = 5/106 (4%)

Query: 2   SCNGCRVLRKGCSESCILRPCLQWIESPESQGHATVFVAKFFGRAGLMSFISAVPESQRP 61
            C  C+ LR+ C   C+L P       P  Q      V K FG + +   + A+P  QR 
Sbjct: 1   PCAACKHLRRKCPPDCVLAPYF-----PAEQPARFANVHKLFGASNVTKLLKALPPEQRD 55

Query: 62  ALFQSLLYEACGRTVNPVNGAVGLLWTGNWHVCQAAVETVLRGGTL 107
              +SLLYEA  R  +PV G VG++W+    + Q   E  L    L
Sbjct: 56  DAMRSLLYEADARARDPVYGCVGVIWSLQQQLEQLQAELALVKAQL 101

Length = 101

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	239
PF03195	101	DUF260: Protein of unknown function DUF260; InterP	100.0

>PF03195 DUF260: Protein of unknown function DUF260; InterPro: IPR004883 The lateral organ boundaries (LOB) gene is expressed at the adaxial base of initiating lateral organs and encodes a plant-specific protein of unknown function

Probab=100.00  E-value=1.5e-45  Score=290.85  Aligned_cols=101  Identities=33%  Similarity=0.593  Sum_probs=96.5

Q ss_pred             CccchhhcccCCCCCCcccccCCCCCCCcccchhhHHHHhhhccccHHHHhhcCCCCChHHHHHHHHHHHhccccCCCCc
Q 026365            2 SCNGCRVLRKGCSESCILRPCLQWIESPESQGHATVFVAKFFGRAGLMSFISAVPESQRPALFQSLLYEACGRTVNPVNG   81 (239)
Q Consensus         2 ~CAACK~lRRrC~~dCilAPYFp~ipa~~~q~fa~~~VhKvFG~sNV~kmL~~lp~~qR~da~~SLlYEA~aR~rDPVyG   81 (239)
                      +|||||||||+|+++|+|||||   |++++++|.  +||||||++||+|||+++|+++|+++|+||+|||++|.+|||||
T Consensus         1 ~CaaCk~lRr~C~~~C~laPyF---P~~~~~~F~--~vhkvFG~sni~k~L~~~~~~~R~~a~~Sl~yEA~~R~~dPv~G   75 (101)
T PF03195_consen    1 PCAACKHLRRRCSPDCVLAPYF---PADQPQRFA--NVHKVFGVSNISKMLQELPPEQREDAMRSLVYEANARARDPVYG   75 (101)
T ss_pred             CChHHHHHhCCCCCCCcCCCCC---ChhHHHHHH--HHHHHHchhHHHHHHHhCCccchhhHHHHHHHHHHhhccCCCcc
Confidence            7999999999999999999999   678888876  79999999999999999999999999999999999999999999


Q ss_pred             hhhhhhhhHHHHHHHHHHHHHcCCCC
Q 026365           82 AVGLLWTGNWHVCQAAVETVLRGGTL  107 (239)
Q Consensus        82 cvGiI~~Lq~qI~q~avE~vL~g~~l  107 (239)
                      |+|+||.|+|||+++++|+++.+..|
T Consensus        76 c~G~i~~L~~ql~~~~~el~~~~~~l  101 (101)
T PF03195_consen   76 CVGIISQLQQQLQQLQAELALVRAQL  101 (101)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHccC
Confidence            99999999999999999999888765

The N-terminal one half of the LOB protein contains a conserved approximately 100-amino acid domain (the LOB domain) that is present in 42 other Arabidopsis thaliana proteins and in proteins from a variety of other plant species. Genes encoding LOB domain (LBD) proteins are expressed in a variety of temporal- and tissue-specific patterns, suggesting that they may function in diverse processes [] The LOB domain contains conserved blocks of amino acids that identify the LBD gene family. In particular, a conserved C-x(2)-C-x(6)-C-x(3)-C motif, which is defining feature of the LOB domain, is present in all LBD proteins. It is possible that this motif forms a new zinc finger [].

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00