Citrus Sinensis ID: 026375

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------24
Protein Sequence
MKNLDLFACVYPEGTHLMVPWFERPVIYDVRARPHLVESTSGSRDLQMVKIGLRVLTRPVADKLPTVYRALGENYNERVLPSIIHETLKAVVAQYNASQLITQRETVSREIRKILTERAANFNIALDDVSITSLTFGKEFTSAIEAKQVAAQEAERAKYIVEKAEQDKRSAIIRAQGEATSAQLIGQAIANNPAFITLRKIEAAREIAQTIAHSANKVFLNSDDLLLNLQEMKLEGAKK
Secondary Structure (PSIPRED)
ccccccccccccccEEEEccccccEEEEEEEEEEEEEccccccccccEEEEEEEEEEEEccccHHHHHHHHccccccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHccEEEEEEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHcccccEEEEcccccccccHHHHHHcccc
Secondary Structure Prediction (SSPRO)
ccccccEcEEcccccEEEEEccEccEEEEEcccccccccccccccHHEEEEEEEEcccccHHHcHHHHHHcccccHHcHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHcccEEcccEEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccccEEEEccccEEEEccccccccccc
Coil and Loop (DISEMBL)
mknldlfacvypegthlmvpwferpviydvrarphlvestsgsrdlqMVKIGLRvltrpvadklPTVYRALGenynervlpSIIHETLKAVVAQYNASQLITQRETVSREIRKILTERAAnfnialddvsitsltfgkeFTSAIEAKQVAAQEAERAKYIVEKAEQDKRSAIIRAQGEATSAQLIGQAIANNPAFITLRKIEAAREIAQTIAHSANKVFLNSDDLLLNLQEMKLEGAKK
Flexible Loop (DISEMBL)
MKNLDLFACVYPEGTHLMVPWFERPVIYDVRARPHLvestsgsrdlqmVKIGlrvltrpvadklPTVYRALGENYNERVLPSIIHETLKAVVAQYnasqlitqretvSREIRKILTeraanfnialddVSITSLTFGKEFTSAIEAKQVAAQEAERAKYIVEKAEQDKRSAIIRAQGEATSAQLIGQAIANNPAFITLRKIEAAREIAQTIAHSANKVFLNSDDLLLNLQEmklegakk
Low Complexity Region (SEG)
MKNLDLFACVYPEGTHLMVPWFERPVIYDVRARPHLVESTSGSRDLQMVKIGLRVLTRPVADKLPTVYRALGENYNERVLPSIIHETLKAVVAQYNASQLITQRETVSREIRKILTERAANFNIALDDVSITSLTFGKEFTSAIEAKQVAAQEAERAKYIVEKAEQDKRSAIIRAQGEATSAQLIGQAIANNPAFITLRKIEAAREIAQTIAHSANKVFLNSDDLLLNLQEMKLEGAKK
Disordered region (IsUnstruct)
***LDLFACVYPEGTHLMVPWFERPVIYDVRARPHLVESTSGSRDLQMVKIGLRVLTRPVADKLPTVYRALGENYNERVLPSIIHETLKAVVAQYNASQLITQRETVSREIRKILTERAANFNIALDDVSITSLTFGKEFTSAIEAKQVAA*****AKYIV**********IIR****ATSAQLIGQAIANNPAFITLRKIEAAREIAQTIAHSANKVFLNSDDLLLNL**********
Disordered Region (DISOPRED)
MKNLDLFACVYPEGTHLMVPWFERPVIYDVRARPHLVESTSGSRDLQMVKIGLRVLTRPVADKLPTVYRALGENYNERVLPSIIHETLKAVVAQYNASQLITQRETVSREIRKILTERAANFNIALDDVSITSLTFGKEFT***********************************************IANNPAFITLRKIEAAREIA***A**A*KVFLNSDDL**************
Disordered Region (DISEMBL)
MKNLDLFACVYPEGTHLMVPWFERPVIYDVRARPHLVESTSGSRDLQMVKIGLRVLTRPVADKLPTVYRALGENYNERVLPSIIHETLKAVVAQYNASQLITQRETVSREIRKILTERAANFNIALDDVSITSLTFGKEFTSAIEAKQVAAQEAERAKYIVEKAEQDKRSAIIRAQGEATSAQLIGQAIANNPAFITLRKIEAAREIAQTIAHSANKVFLNSDDLLLNLQEMKLEGAKK
Disordered Region (DISPRO)
*KNLDLFACVYPEGTHLMVPWFERPVIYDVRARPHLVESTSGSRDLQMVKIGLRVLTRPVADKLPTVYRALGENYNERVLPSIIHETLKAVVAQYNASQLITQRETVSREIRKILTERAANFNIALDDVSITSLTFGKEFTSAIEAKQVAAQEAERAKYIVEKAEQDKRSAIIRAQGEATSAQLIGQAIANNPAFITLRKIEAAREIAQTIAHSANKVFLNSDDLLLNLQE********
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKNLDLFACVYPEGTHLMVPWFERPVIYDVRARPHLVESTSGSRDLQMVKIGLRVLTRPVADKLPTVYRALGENYNERVLPSIIHETLKAVVAQYNASQLITQRETVSREIRKILTERAANFNIALDDVSITSLTFGKEFTSAIEAxxxxxxxxxxxxxxxxxxxxxKRSAIIRAQGEATSAQLIGQAIANNPAFITLRKIEAAREIAQTIAHSANKVFLNSDDLLLNLQEMKLEGAKK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	239	2.2.26 [Sep-21-2011]
O49460	288	Prohibitin-1, mitochondri	yes	no	0.945	0.784	0.898	1e-110
Q9ZNT7	286	Prohibitin-2, mitochondri	no	no	0.958	0.800	0.873	1e-109
Q9SIL6	286	Prohibitin-6, mitochondri	no	no	0.945	0.790	0.871	1e-107
Q9FFH5	278	Prohibitin-7, mitochondri	no	no	0.924	0.794	0.805	1e-99
Q54Q31	293	Prohibitin-2 OS=Dictyoste	yes	no	0.916	0.747	0.611	6e-76
A9UMS3	301	Prohibitin-2 OS=Xenopus t	yes	no	0.933	0.740	0.573	2e-75
Q5ZMN3	301	Prohibitin-2 OS=Gallus ga	yes	no	0.933	0.740	0.573	4e-75
Q5XIH7	299	Prohibitin-2 OS=Rattus no	yes	no	0.933	0.745	0.565	1e-74
O35129	299	Prohibitin-2 OS=Mus muscu	yes	no	0.933	0.745	0.565	2e-74
Q99623	299	Prohibitin-2 OS=Homo sapi	yes	no	0.933	0.745	0.565	2e-74

>sp|O49460|PHB1_ARATH Prohibitin-1, mitochondrial OS=Arabidopsis thaliana GN=PHB1 PE=1 SV=1

 Score =  396 bits (1017), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 203/226 (89%), Positives = 220/226 (97%)

Query: 10  VYPEGTHLMVPWFERPVIYDVRARPHLVESTSGSRDLQMVKIGLRVLTRPVADKLPTVYR 69
           VYPEGTHLM+PWFERPVIYDVRARP+LVESTSGSRDLQMVKIGLRVLTRP+AD+LP +YR
Sbjct: 58  VYPEGTHLMIPWFERPVIYDVRARPYLVESTSGSRDLQMVKIGLRVLTRPMADQLPEIYR 117

Query: 70  ALGENYNERVLPSIIHETLKAVVAQYNASQLITQRETVSREIRKILTERAANFNIALDDV 129
           +LGENY+ERVLPSII+ETLKAVVAQYNASQLITQRE VSREIRKILTERAANFN+ALDDV
Sbjct: 118 SLGENYSERVLPSIINETLKAVVAQYNASQLITQREAVSREIRKILTERAANFNVALDDV 177

Query: 130 SITSLTFGKEFTSAIEAKQVAAQEAERAKYIVEKAEQDKRSAIIRAQGEATSAQLIGQAI 189
           SIT+LTFGKEFT+AIEAKQVAAQEAERAK+IVEKAEQDKRSA+IRAQGEA SAQLIGQAI
Sbjct: 178 SITNLTFGKEFTAAIEAKQVAAQEAERAKFIVEKAEQDKRSAVIRAQGEAKSAQLIGQAI 237

Query: 190 ANNPAFITLRKIEAAREIAQTIAHSANKVFLNSDDLLLNLQEMKLE 235
           ANN AFITLRKIEAAREIAQTIA+SANKV+L+SDDLLLNLQ M L+
Sbjct: 238 ANNQAFITLRKIEAAREIAQTIANSANKVYLSSDDLLLNLQGMNLD 283

Prohibitin probably acts as a holdase/unfoldase for the stabilization of newly synthesized mitochondrial proteins.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZNT7|PHB2_ARATH Prohibitin-2, mitochondrial OS=Arabidopsis thaliana GN=PHB2 PE=1 SV=1

 Score =  393 bits (1010), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 200/229 (87%), Positives = 217/229 (94%)

Query: 10  VYPEGTHLMVPWFERPVIYDVRARPHLVESTSGSRDLQMVKIGLRVLTRPVADKLPTVYR 69
           VYPEGTH MVPWFERP+IYDVRARP+LVEST+GS DLQMVKIGLRVLTRP+ D+LP +YR
Sbjct: 58  VYPEGTHFMVPWFERPIIYDVRARPYLVESTTGSHDLQMVKIGLRVLTRPMGDRLPQIYR 117

Query: 70  ALGENYNERVLPSIIHETLKAVVAQYNASQLITQRETVSREIRKILTERAANFNIALDDV 129
            LGENY+ERVLPSIIHETLKAVVAQYNASQLITQRE VSREIRKILTERA+NF+IALDDV
Sbjct: 118 TLGENYSERVLPSIIHETLKAVVAQYNASQLITQREAVSREIRKILTERASNFDIALDDV 177

Query: 130 SITSLTFGKEFTSAIEAKQVAAQEAERAKYIVEKAEQDKRSAIIRAQGEATSAQLIGQAI 189
           SIT+LTFGKEFT+AIEAKQVAAQEAERAK+IVEKAEQD+RSA+IRAQGEA SAQLIGQAI
Sbjct: 178 SITTLTFGKEFTAAIEAKQVAAQEAERAKFIVEKAEQDRRSAVIRAQGEAKSAQLIGQAI 237

Query: 190 ANNPAFITLRKIEAAREIAQTIAHSANKVFLNSDDLLLNLQEMKLEGAK 238
           ANN AFITLRKIEAAREIAQTIA SANKV+L+S+DLLLNLQEM LE  K
Sbjct: 238 ANNQAFITLRKIEAAREIAQTIAQSANKVYLSSNDLLLNLQEMNLEPKK 286

Prohibitin probably acts as a holdase/unfoldase for the stabilization of newly synthesized mitochondrial proteins.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SIL6|PHB6_ARATH Prohibitin-6, mitochondrial OS=Arabidopsis thaliana GN=PHB6 PE=1 SV=1

 Score =  387 bits (994), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 197/226 (87%), Positives = 216/226 (95%)

Query: 10  VYPEGTHLMVPWFERPVIYDVRARPHLVESTSGSRDLQMVKIGLRVLTRPVADKLPTVYR 69
           VYPEGTHLM+PWFERP+IYDVRA+P+LVESTSGSRDLQMVKIGLRVLTRP+AD+LP VYR
Sbjct: 56  VYPEGTHLMIPWFERPIIYDVRAKPYLVESTSGSRDLQMVKIGLRVLTRPMADQLPEVYR 115

Query: 70  ALGENYNERVLPSIIHETLKAVVAQYNASQLITQRETVSREIRKILTERAANFNIALDDV 129
           +LGENY ERVLPSIIHETLKAVVAQYNASQLITQRE+VSREIRKILT RAANF+IALDDV
Sbjct: 116 SLGENYRERVLPSIIHETLKAVVAQYNASQLITQRESVSREIRKILTLRAANFHIALDDV 175

Query: 130 SITSLTFGKEFTSAIEAKQVAAQEAERAKYIVEKAEQDKRSAIIRAQGEATSAQLIGQAI 189
           SIT LTFGKEFT+AIE KQVAAQEAERAK+IVEKAEQDKRSA+IRA+GEA SAQLIGQAI
Sbjct: 176 SITGLTFGKEFTAAIEGKQVAAQEAERAKFIVEKAEQDKRSAVIRAEGEAKSAQLIGQAI 235

Query: 190 ANNPAFITLRKIEAAREIAQTIAHSANKVFLNSDDLLLNLQEMKLE 235
           ANN AF+TLRKIEAAREIAQTI+ SANKV+L+S+DLLLNLQ M L+
Sbjct: 236 ANNQAFLTLRKIEAAREIAQTISRSANKVYLSSNDLLLNLQAMDLD 281

Prohibitin probably acts as a holdase/unfoldase for the stabilization of newly synthesized mitochondrial proteins.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FFH5|PHB7_ARATH Prohibitin-7, mitochondrial OS=Arabidopsis thaliana GN=PHB7 PE=1 SV=1

 Score =  362 bits (929), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 178/221 (80%), Positives = 196/221 (88%)

Query: 10  VYPEGTHLMVPWFERPVIYDVRARPHLVESTSGSRDLQMVKIGLRVLTRPVADKLPTVYR 69
           VYPEGTH  +P FER +IYDVR+RP++  S +GS DLQ V IGLRVLTRP+ D+LP +YR
Sbjct: 58  VYPEGTHFKIPLFERAIIYDVRSRPYVENSQTGSNDLQTVTIGLRVLTRPMGDRLPEIYR 117

Query: 70  ALGENYNERVLPSIIHETLKAVVAQYNASQLITQRETVSREIRKILTERAANFNIALDDV 129
            LG+NY ERVLPSII+ETLKAVVAQYNAS LITQRE VSREIRKI+TERAA FNIALDDV
Sbjct: 118 TLGQNYGERVLPSIINETLKAVVAQYNASHLITQREAVSREIRKIVTERAAKFNIALDDV 177

Query: 130 SITSLTFGKEFTSAIEAKQVAAQEAERAKYIVEKAEQDKRSAIIRAQGEATSAQLIGQAI 189
           SIT+L FGKEFT AIE KQVAAQEAERAK+IVEKAEQDK+SAIIRAQGEA SAQLIGQAI
Sbjct: 178 SITNLKFGKEFTEAIEKKQVAAQEAERAKFIVEKAEQDKKSAIIRAQGEAKSAQLIGQAI 237

Query: 190 ANNPAFITLRKIEAAREIAQTIAHSANKVFLNSDDLLLNLQ 230
           ANN AFITLRKIEAAREIAQTIA SANKV+LNS DLL++ Q
Sbjct: 238 ANNEAFITLRKIEAAREIAQTIAKSANKVYLNSSDLLISKQ 278

Prohibitin probably acts as a holdase/unfoldase for the stabilization of newly synthesized mitochondrial proteins.

Arabidopsis thaliana (taxid: 3702)

>sp|Q54Q31|PHB2_DICDI Prohibitin-2 OS=Dictyostelium discoideum GN=phbB PE=3 SV=1

 Score =  283 bits (725), Expect = 6e-76,   Method: Compositional matrix adjust.
 Identities = 134/219 (61%), Positives = 176/219 (80%)

Query: 10  VYPEGTHLMVPWFERPVIYDVRARPHLVESTSGSRDLQMVKIGLRVLTRPVADKLPTVYR 69
           VY EGTH +VPWFER  IYDVRA+P  + S +GS+DLQMV I +RVL++P   +LP +YR
Sbjct: 63  VYNEGTHFIVPWFERAEIYDVRAKPRSISSLTGSKDLQMVNITIRVLSKPKVSQLPAIYR 122

Query: 70  ALGENYNERVLPSIIHETLKAVVAQYNASQLITQRETVSREIRKILTERAANFNIALDDV 129
            LG++Y+ERVLPSI++E LK++VAQ+NASQLITQRE VSR I K L +RA +FNI LDDV
Sbjct: 123 TLGKDYDERVLPSIVNEILKSIVAQFNASQLITQREQVSRLIFKRLVDRAKDFNIELDDV 182

Query: 130 SITSLTFGKEFTSAIEAKQVAAQEAERAKYIVEKAEQDKRSAIIRAQGEATSAQLIGQAI 189
           SIT L FG+E+ +AIEAKQVA QEAERA+++VEKA QDKRS I++A+GEA SAQLI  AI
Sbjct: 183 SITHLNFGREYAAAIEAKQVAQQEAERARFLVEKALQDKRSIIVKAEGEAQSAQLINDAI 242

Query: 190 ANNPAFITLRKIEAAREIAQTIAHSANKVFLNSDDLLLN 228
             +P  + LR +EA++EIA  ++ S NK++++++ LLLN
Sbjct: 243 KQSPYLVQLRTLEASKEIAHILSKSPNKLYISNETLLLN 281

Prohibitin probably acts as a holdase/unfoldase for the stabilization of newly synthesized mitochondrial proteins.

Dictyostelium discoideum (taxid: 44689)

>sp|A9UMS3|PHB2_XENTR Prohibitin-2 OS=Xenopus tropicalis GN=phb2 PE=2 SV=1

 Score =  281 bits (720), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 128/223 (57%), Positives = 182/223 (81%)

Query: 9   CVYPEGTHLMVPWFERPVIYDVRARPHLVESTSGSRDLQMVKIGLRVLTRPVADKLPTVY 68
            +  EG H   PWF+ P+IYD+RARP  + S +GS+DLQMV I LRVL+RP+A +LP +Y
Sbjct: 62  TILAEGLHFRFPWFQYPIIYDIRARPRKISSPTGSKDLQMVNITLRVLSRPLASELPFMY 121

Query: 69  RALGENYNERVLPSIIHETLKAVVAQYNASQLITQRETVSREIRKILTERAANFNIALDD 128
           + LG +Y+ERVLPSI++E LK+VVA++NASQLITQR  VS  IR+ LTERA +F+I LDD
Sbjct: 122 QRLGLDYDERVLPSIVNEVLKSVVAKFNASQLITQRAQVSLLIRRELTERAKDFSIILDD 181

Query: 129 VSITSLTFGKEFTSAIEAKQVAAQEAERAKYIVEKAEQDKRSAIIRAQGEATSAQLIGQA 188
           V+IT L+F +E+T+A+E+KQVA QEA+RA+++VEKA+QD++  I++A+GEA +A++IG A
Sbjct: 182 VAITELSFSREYTAAVESKQVAQQEAQRAQFLVEKAKQDQKQKIVQAEGEAAAAKMIGDA 241

Query: 189 IANNPAFITLRKIEAAREIAQTIAHSANKVFLNSDDLLLNLQE 231
           ++ NP ++ LR+I AA+ IA+TIA S N+V+LN+D L+LNLQ+
Sbjct: 242 LSKNPGYLKLRRIRAAQSIAKTIASSQNRVYLNADSLVLNLQD 284

Acts as a mediator of transcriptional repression by nuclear hormone receptors via recruitment of histone deacetylases. Functions as an estrogen receptor (ER)-selective coregulator that potentiates the inhibitory activities of antiestrogens and represses the activity of estrogens. Competes with NCOA1 for modulation of ER transcriptional activity. Probably involved in regulating mitochondrial respiration activity and in aging.

Xenopus tropicalis (taxid: 8364)

>sp|Q5ZMN3|PHB2_CHICK Prohibitin-2 OS=Gallus gallus GN=PHB2 PE=2 SV=1

 Score =  281 bits (718), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 128/223 (57%), Positives = 184/223 (82%)

Query: 9   CVYPEGTHLMVPWFERPVIYDVRARPHLVESTSGSRDLQMVKIGLRVLTRPVADKLPTVY 68
            +  EG H  +PWF+ P+IYD+RARP  + S +GS+DLQMV I LRVLTRP A +LP++Y
Sbjct: 62  TILAEGLHFRIPWFQYPIIYDIRARPRKISSPTGSKDLQMVNISLRVLTRPNAAELPSMY 121

Query: 69  RALGENYNERVLPSIIHETLKAVVAQYNASQLITQRETVSREIRKILTERAANFNIALDD 128
           + LG +Y ERVLPSI++E LK+VVA++NASQLITQR  VS  IR+ LTERA +F++ LDD
Sbjct: 122 QRLGLDYEERVLPSIVNEVLKSVVAKFNASQLITQRAQVSLLIRRELTERAKDFSLILDD 181

Query: 129 VSITSLTFGKEFTSAIEAKQVAAQEAERAKYIVEKAEQDKRSAIIRAQGEATSAQLIGQA 188
           V+IT L+F +E+T+A+EAKQVA QEA+RA+++VEKA+Q+++  I++A+GEAT+A+++G+A
Sbjct: 182 VAITELSFSREYTAAVEAKQVAQQEAQRAQFLVEKAKQEQKQKIVQAEGEATAAKMLGEA 241

Query: 189 IANNPAFITLRKIEAAREIAQTIAHSANKVFLNSDDLLLNLQE 231
           ++ NP +I LRKI AA+ I++TIA S N+V+L +D+L+LNLQ+
Sbjct: 242 LSRNPGYIKLRKIRAAQNISKTIAGSQNRVYLTADNLVLNLQD 284

Acts as a mediator of transcriptional repression by nuclear hormone receptors via recruitment of histone deacetylases. Functions as an estrogen receptor (ER)-selective coregulator that potentiates the inhibitory activities of antiestrogens and represses the activity of estrogens. Competes with NCOA1 for modulation of ER transcriptional activity. Probably involved in regulating mitochondrial respiration activity and in aging.

Gallus gallus (taxid: 9031)

>sp|Q5XIH7|PHB2_RAT Prohibitin-2 OS=Rattus norvegicus GN=Phb2 PE=1 SV=1

 Score =  279 bits (713), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 126/223 (56%), Positives = 183/223 (82%)

Query: 9   CVYPEGTHLMVPWFERPVIYDVRARPHLVESTSGSRDLQMVKIGLRVLTRPVADKLPTVY 68
            +  EG H  +PWF+ P+IYD+RARP  + S +GS+DLQMV I LRVL+RP A +LP++Y
Sbjct: 62  TILAEGLHFRIPWFQYPIIYDIRARPRKISSPTGSKDLQMVNISLRVLSRPNAQELPSMY 121

Query: 69  RALGENYNERVLPSIIHETLKAVVAQYNASQLITQRETVSREIRKILTERAANFNIALDD 128
           + LG +Y ERVLPSI++E LK+VVA++NASQLITQR  VS  IR+ LTERA +F++ LDD
Sbjct: 122 QRLGLDYEERVLPSIVNEVLKSVVAKFNASQLITQRAQVSLLIRRELTERAKDFSLILDD 181

Query: 129 VSITSLTFGKEFTSAIEAKQVAAQEAERAKYIVEKAEQDKRSAIIRAQGEATSAQLIGQA 188
           V+IT L+F +E+T+A+EAKQVA QEA+RA+++VEKA+Q++R  I++A+GEA +A+++G+A
Sbjct: 182 VAITELSFSREYTAAVEAKQVAQQEAQRAQFLVEKAKQEQRQKIVQAEGEAEAAKMLGEA 241

Query: 189 IANNPAFITLRKIEAAREIAQTIAHSANKVFLNSDDLLLNLQE 231
           ++ NP +I LRKI AA+ I++TIA S N+++L +D+L+LNLQ+
Sbjct: 242 LSKNPGYIKLRKIRAAQNISKTIATSQNRIYLTADNLVLNLQD 284

Acts as a mediator of transcriptional repression by nuclear hormone receptors via recruitment of histone deacetylases. Functions as an estrogen receptor (ER)-selective coregulator that potentiates the inhibitory activities of antiestrogens and represses the activity of estrogens. Competes with NCOA1 for modulation of ER transcriptional activity. Probably involved in regulating mitochondrial respiration activity and in aging.

Rattus norvegicus (taxid: 10116)

>sp|O35129|PHB2_MOUSE Prohibitin-2 OS=Mus musculus GN=Phb2 PE=1 SV=1

 Score =  278 bits (712), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 126/223 (56%), Positives = 183/223 (82%)

Query: 9   CVYPEGTHLMVPWFERPVIYDVRARPHLVESTSGSRDLQMVKIGLRVLTRPVADKLPTVY 68
            +  EG H  +PWF+ P+IYD+RARP  + S +GS+DLQMV I LRVL+RP A +LP++Y
Sbjct: 62  TILAEGLHFRIPWFQYPIIYDIRARPRKISSPTGSKDLQMVNISLRVLSRPNAQELPSMY 121

Query: 69  RALGENYNERVLPSIIHETLKAVVAQYNASQLITQRETVSREIRKILTERAANFNIALDD 128
           + LG +Y ERVLPSI++E LK+VVA++NASQLITQR  VS  IR+ LTERA +F++ LDD
Sbjct: 122 QRLGLDYEERVLPSIVNEVLKSVVAKFNASQLITQRAQVSLLIRRELTERAKDFSLILDD 181

Query: 129 VSITSLTFGKEFTSAIEAKQVAAQEAERAKYIVEKAEQDKRSAIIRAQGEATSAQLIGQA 188
           V+IT L+F +E+T+A+EAKQVA QEA+RA+++VEKA+Q++R  I++A+GEA +A+++G+A
Sbjct: 182 VAITELSFSREYTAAVEAKQVAQQEAQRAQFLVEKAKQEQRQKIVQAEGEAEAAKMLGEA 241

Query: 189 IANNPAFITLRKIEAAREIAQTIAHSANKVFLNSDDLLLNLQE 231
           ++ NP +I LRKI AA+ I++TIA S N+++L +D+L+LNLQ+
Sbjct: 242 LSKNPGYIKLRKIRAAQNISKTIATSQNRIYLTADNLVLNLQD 284

Acts as a mediator of transcriptional repression by nuclear hormone receptors via recruitment of histone deacetylases. Functions as an estrogen receptor (ER)-selective coregulator that potentiates the inhibitory activities of antiestrogens and represses the activity of estrogens. Competes with NCOA1 for modulation of ER transcriptional activity. Probably involved in regulating mitochondrial respiration activity and in aging.

Mus musculus (taxid: 10090)

>sp|Q99623|PHB2_HUMAN Prohibitin-2 OS=Homo sapiens GN=PHB2 PE=1 SV=2

 Score =  278 bits (712), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 126/223 (56%), Positives = 183/223 (82%)

Query: 9   CVYPEGTHLMVPWFERPVIYDVRARPHLVESTSGSRDLQMVKIGLRVLTRPVADKLPTVY 68
            +  EG H  +PWF+ P+IYD+RARP  + S +GS+DLQMV I LRVL+RP A +LP++Y
Sbjct: 62  TILAEGLHFRIPWFQYPIIYDIRARPRKISSPTGSKDLQMVNISLRVLSRPNAQELPSMY 121

Query: 69  RALGENYNERVLPSIIHETLKAVVAQYNASQLITQRETVSREIRKILTERAANFNIALDD 128
           + LG +Y ERVLPSI++E LK+VVA++NASQLITQR  VS  IR+ LTERA +F++ LDD
Sbjct: 122 QRLGLDYEERVLPSIVNEVLKSVVAKFNASQLITQRAQVSLLIRRELTERAKDFSLILDD 181

Query: 129 VSITSLTFGKEFTSAIEAKQVAAQEAERAKYIVEKAEQDKRSAIIRAQGEATSAQLIGQA 188
           V+IT L+F +E+T+A+EAKQVA QEA+RA+++VEKA+Q++R  I++A+GEA +A+++G+A
Sbjct: 182 VAITELSFSREYTAAVEAKQVAQQEAQRAQFLVEKAKQEQRQKIVQAEGEAEAAKMLGEA 241

Query: 189 IANNPAFITLRKIEAAREIAQTIAHSANKVFLNSDDLLLNLQE 231
           ++ NP +I LRKI AA+ I++TIA S N+++L +D+L+LNLQ+
Sbjct: 242 LSKNPGYIKLRKIRAAQNISKTIATSQNRIYLTADNLVLNLQD 284

Acts as a mediator of transcriptional repression by nuclear hormone receptors via recruitment of histone deacetylases (By similarity). Functions as an estrogen receptor (ER)-selective coregulator that potentiates the inhibitory activities of antiestrogens and represses the activity of estrogens. Competes with NCOA1 for modulation of ER transcriptional activity. Probably involved in regulating mitochondrial respiration activity and in aging.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	239
255553601	290	prohibitin, putative [Ricinus communis]	0.945	0.779	0.920	1e-118
224095604	290	predicted protein [Populus trichocarpa]	0.962	0.793	0.904	1e-117
357474343	293	Prohibitin 1-like protein [Medicago trun	0.962	0.784	0.895	1e-116
116785563	297	unknown [Picea sitchensis]	0.953	0.767	0.877	1e-114
388507410	287	unknown [Medicago truncatula]	0.962	0.801	0.878	1e-113
77416945	296	unknown [Solanum tuberosum]	0.953	0.770	0.863	1e-113
296089030	363	unnamed protein product [Vitis vinifera]	0.953	0.628	0.912	1e-112
147771517	291	hypothetical protein VITISV_005691 [Viti	0.953	0.783	0.912	1e-111
71370259	290	PHB2 [Nicotiana benthamiana]	0.878	0.724	0.928	1e-111
359494682	290	PREDICTED: prohibitin-2 isoform 2 [Vitis	0.953	0.786	0.899	1e-111

>gi|255553601|ref|XP_002517841.1| prohibitin, putative [Ricinus communis] gi|223542823|gb|EEF44359.1| prohibitin, putative [Ricinus communis]

 Score =  431 bits (1108), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 208/226 (92%), Positives = 222/226 (98%)

Query: 10  VYPEGTHLMVPWFERPVIYDVRARPHLVESTSGSRDLQMVKIGLRVLTRPVADKLPTVYR 69
           VYPEGTH MVPWFERPVIYDVRARPHLVESTSGSRDLQMVKIGLRVLTRPVA++LPT+YR
Sbjct: 60  VYPEGTHFMVPWFERPVIYDVRARPHLVESTSGSRDLQMVKIGLRVLTRPVANELPTIYR 119

Query: 70  ALGENYNERVLPSIIHETLKAVVAQYNASQLITQRETVSREIRKILTERAANFNIALDDV 129
            LGENYNERVLPSIIHETLKAVVAQYNASQLITQRE VSREIRKILTERAANFN+ALDDV
Sbjct: 120 TLGENYNERVLPSIIHETLKAVVAQYNASQLITQREAVSREIRKILTERAANFNLALDDV 179

Query: 130 SITSLTFGKEFTSAIEAKQVAAQEAERAKYIVEKAEQDKRSAIIRAQGEATSAQLIGQAI 189
           SIT+LTFGKEFT+AIEAKQVAAQEAERAK+IVEKAEQDK+SA+IRA+GEATSAQLIGQAI
Sbjct: 180 SITTLTFGKEFTAAIEAKQVAAQEAERAKFIVEKAEQDKKSAVIRAEGEATSAQLIGQAI 239

Query: 190 ANNPAFITLRKIEAAREIAQTIAHSANKVFLNSDDLLLNLQEMKLE 235
           ANNPAFITLRKIEAAREIA TIA+SANKVFLNS+DLLLNLQ+M+LE
Sbjct: 240 ANNPAFITLRKIEAAREIAHTIANSANKVFLNSEDLLLNLQKMELE 285

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224095604|ref|XP_002310417.1| predicted protein [Populus trichocarpa] gi|118484973|gb|ABK94351.1| unknown [Populus trichocarpa] gi|222853320|gb|EEE90867.1| predicted protein [Populus trichocarpa]

 Score =  427 bits (1099), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 208/230 (90%), Positives = 220/230 (95%)

Query: 10  VYPEGTHLMVPWFERPVIYDVRARPHLVESTSGSRDLQMVKIGLRVLTRPVADKLPTVYR 69
           VYPEGTH MVPWFERPVIYDVRARPHLVESTSGSRDLQMVKIGLRVLTRPVAD+LP +YR
Sbjct: 60  VYPEGTHFMVPWFERPVIYDVRARPHLVESTSGSRDLQMVKIGLRVLTRPVADQLPEIYR 119

Query: 70  ALGENYNERVLPSIIHETLKAVVAQYNASQLITQRETVSREIRKILTERAANFNIALDDV 129
            LGENYNERVLPSIIHETLKAVVAQYNASQLITQRE VSREIRKILTERA NFNIALDDV
Sbjct: 120 TLGENYNERVLPSIIHETLKAVVAQYNASQLITQREAVSREIRKILTERAVNFNIALDDV 179

Query: 130 SITSLTFGKEFTSAIEAKQVAAQEAERAKYIVEKAEQDKRSAIIRAQGEATSAQLIGQAI 189
           SITSLTFGKEFT+AIEAKQVAAQEAERAK+IVEKAEQDK+SA+IRA+GEATSAQLIGQAI
Sbjct: 180 SITSLTFGKEFTAAIEAKQVAAQEAERAKFIVEKAEQDKKSAVIRAEGEATSAQLIGQAI 239

Query: 190 ANNPAFITLRKIEAAREIAQTIAHSANKVFLNSDDLLLNLQEMKLEGAKK 239
           ANNPAFITLRKIEAAREIA TI++SANKVFL+S DLLLNLQ+M+LE   K
Sbjct: 240 ANNPAFITLRKIEAAREIAHTISNSANKVFLDSGDLLLNLQKMELETTGK 289

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357474343|ref|XP_003607456.1| Prohibitin 1-like protein [Medicago truncatula] gi|355508511|gb|AES89653.1| Prohibitin 1-like protein [Medicago truncatula]

 Score =  423 bits (1088), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 206/230 (89%), Positives = 219/230 (95%)

Query: 10  VYPEGTHLMVPWFERPVIYDVRARPHLVESTSGSRDLQMVKIGLRVLTRPVADKLPTVYR 69
           VYPEGTH+M+PWFERPVIYDVRARPHLVESTSGSRDLQMVKIGLRVLTRPV D+LPTVYR
Sbjct: 63  VYPEGTHIMIPWFERPVIYDVRARPHLVESTSGSRDLQMVKIGLRVLTRPVPDQLPTVYR 122

Query: 70  ALGENYNERVLPSIIHETLKAVVAQYNASQLITQRETVSREIRKILTERAANFNIALDDV 129
            LGENYNERVLPSIIHETLK+VVAQYNASQLITQRE VSREIRKILTERA+ FNIALDDV
Sbjct: 123 TLGENYNERVLPSIIHETLKSVVAQYNASQLITQREAVSREIRKILTERASQFNIALDDV 182

Query: 130 SITSLTFGKEFTSAIEAKQVAAQEAERAKYIVEKAEQDKRSAIIRAQGEATSAQLIGQAI 189
           SITSLTFG+EFT+AIEAKQVAAQEAERAK++VEKAEQDKRSAIIRAQGEATSAQLIGQAI
Sbjct: 183 SITSLTFGREFTAAIEAKQVAAQEAERAKFVVEKAEQDKRSAIIRAQGEATSAQLIGQAI 242

Query: 190 ANNPAFITLRKIEAAREIAQTIAHSANKVFLNSDDLLLNLQEMKLEGAKK 239
           ANNPAFI LRKIEAAREIA  IA+SANKVFLNS+DLLLNLQE+  E + K
Sbjct: 243 ANNPAFIDLRKIEAAREIAVLIANSANKVFLNSEDLLLNLQELTSESSGK 292

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|116785563|gb|ABK23774.1| unknown [Picea sitchensis]

 Score =  417 bits (1073), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 200/228 (87%), Positives = 221/228 (96%)

Query: 10  VYPEGTHLMVPWFERPVIYDVRARPHLVESTSGSRDLQMVKIGLRVLTRPVADKLPTVYR 69
           VYPEGTHLM+PWF+RPVIYDVRARPHLVESTSGSRDLQMVKIGLRVLTRP+ D+LPT+YR
Sbjct: 61  VYPEGTHLMMPWFDRPVIYDVRARPHLVESTSGSRDLQMVKIGLRVLTRPMPDQLPTIYR 120

Query: 70  ALGENYNERVLPSIIHETLKAVVAQYNASQLITQRETVSREIRKILTERAANFNIALDDV 129
           ALGENYNERVLPSIIHETLKAVVAQYNASQLITQRE VSREIR+ILTERA NFNIALDDV
Sbjct: 121 ALGENYNERVLPSIIHETLKAVVAQYNASQLITQREAVSREIRRILTERATNFNIALDDV 180

Query: 130 SITSLTFGKEFTSAIEAKQVAAQEAERAKYIVEKAEQDKRSAIIRAQGEATSAQLIGQAI 189
           SITSLTFG+EFT+AIEAKQVAAQEAERAK++VEKAEQDK+SAIIRAQGEATSAQLIG+AI
Sbjct: 181 SITSLTFGREFTAAIEAKQVAAQEAERAKFVVEKAEQDKKSAIIRAQGEATSAQLIGEAI 240

Query: 190 ANNPAFITLRKIEAAREIAQTIAHSANKVFLNSDDLLLNLQEMKLEGA 237
           +NNPAFITLRKIEA+REIA TI++S+N+VFL+SD LLLNLQ+M L+ A
Sbjct: 241 SNNPAFITLRKIEASREIAHTISNSSNRVFLSSDALLLNLQDMSLDDA 288

Source: Picea sitchensis

Species: Picea sitchensis

Genus: Picea

Family: Pinaceae

Order: Coniferales

Class: Coniferopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388507410|gb|AFK41771.1| unknown [Medicago truncatula]

 Score =  414 bits (1065), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 202/230 (87%), Positives = 216/230 (93%)

Query: 10  VYPEGTHLMVPWFERPVIYDVRARPHLVESTSGSRDLQMVKIGLRVLTRPVADKLPTVYR 69
           VYPEGTH ++PWFERPVIYDVRARPHLVESTSGSRDLQMVKIGLRVLTRP+  +LPTVYR
Sbjct: 58  VYPEGTHFVIPWFERPVIYDVRARPHLVESTSGSRDLQMVKIGLRVLTRPLPGQLPTVYR 117

Query: 70  ALGENYNERVLPSIIHETLKAVVAQYNASQLITQRETVSREIRKILTERAANFNIALDDV 129
            LGENYNERVLPSIIHETLKAVVAQYNASQLITQRE VSREIRKILTERAANFNIALDDV
Sbjct: 118 TLGENYNERVLPSIIHETLKAVVAQYNASQLITQREAVSREIRKILTERAANFNIALDDV 177

Query: 130 SITSLTFGKEFTSAIEAKQVAAQEAERAKYIVEKAEQDKRSAIIRAQGEATSAQLIGQAI 189
           SITS TFGKEFT+AIEAKQVAAQEAERAK++VEKAEQDKRSA+IRAQGEA SAQLIGQAI
Sbjct: 178 SITSPTFGKEFTAAIEAKQVAAQEAERAKFVVEKAEQDKRSAVIRAQGEAKSAQLIGQAI 237

Query: 190 ANNPAFITLRKIEAAREIAQTIAHSANKVFLNSDDLLLNLQEMKLEGAKK 239
           ANNPAFITLRKIEAAREIA  IA+SANKV+L + DLLLNLQ + L+ +KK
Sbjct: 238 ANNPAFITLRKIEAAREIAHVIANSANKVYLEAGDLLLNLQGINLDPSKK 287

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|77416945|gb|ABA81868.1| unknown [Solanum tuberosum]

 Score =  412 bits (1059), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 203/235 (86%), Positives = 217/235 (92%), Gaps = 7/235 (2%)

Query: 10  VYPEGTHLMVPWFERPVIYDVRARPHLVESTSGSRDLQMVKIGLRVLTRPVADKLPTVYR 69
           VYPEGTH M+PWFERPVIYDVRARPHLVESTSGSRDLQMVKIGLRVLTRPV+D+LPTVYR
Sbjct: 60  VYPEGTHFMIPWFERPVIYDVRARPHLVESTSGSRDLQMVKIGLRVLTRPVSDQLPTVYR 119

Query: 70  ALGENYNERVLPSIIHETLKAVVAQYNASQLITQRETVSREIRKILTERAANFNIALDDV 129
           +LGENYNERVLPSIIHETLKAVVAQYNASQLITQRE VSREIRKILTERAANFNIALDDV
Sbjct: 120 SLGENYNERVLPSIIHETLKAVVAQYNASQLITQRENVSREIRKILTERAANFNIALDDV 179

Query: 130 SITSLTFGKEFTSAIEAKQVAAQEAERAKYIVEKAEQDKRSAIIRAQGEATSAQLIGQAI 189
           SITSLTFGKEFT+AIEAKQVAAQEAERAK++VEKAEQDKRSA+IRAQGEA SAQLIGQAI
Sbjct: 180 SITSLTFGKEFTAAIEAKQVAAQEAERAKFVVEKAEQDKRSAVIRAQGEAKSAQLIGQAI 239

Query: 190 ANNPAFITLRKIEAAREIAQTIAHSANKVFLNSDDLLL-------NLQEMKLEGA 237
           ANNPAFITLRKIEAAREIAQTI+H+ANKV+L++    L        LQE  L+ A
Sbjct: 240 ANNPAFITLRKIEAAREIAQTISHAANKVYLSAMICCLTFRTSTWTLQESDLDSA 294

Source: Solanum tuberosum

Species: Solanum tuberosum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296089030|emb|CBI38733.3| unnamed protein product [Vitis vinifera]

 Score =  408 bits (1049), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 208/228 (91%), Positives = 220/228 (96%)

Query: 10  VYPEGTHLMVPWFERPVIYDVRARPHLVESTSGSRDLQMVKIGLRVLTRPVADKLPTVYR 69
           VYPEGTHLM+PWFERPVIYDVRARPHLVESTSGSRDLQMVKIGLRVLTRPV D+LP +YR
Sbjct: 132 VYPEGTHLMIPWFERPVIYDVRARPHLVESTSGSRDLQMVKIGLRVLTRPVPDQLPAIYR 191

Query: 70  ALGENYNERVLPSIIHETLKAVVAQYNASQLITQRETVSREIRKILTERAANFNIALDDV 129
            LGENYNERVLPSIIHETLKAVVAQYNASQLITQRE VSREIRKILTERAANFNIALDDV
Sbjct: 192 TLGENYNERVLPSIIHETLKAVVAQYNASQLITQREAVSREIRKILTERAANFNIALDDV 251

Query: 130 SITSLTFGKEFTSAIEAKQVAAQEAERAKYIVEKAEQDKRSAIIRAQGEATSAQLIGQAI 189
           SITSLTFGKEFT+AIEAKQVAAQEAERAK++VEKAEQDK+SAIIRAQGEA SAQLIGQAI
Sbjct: 252 SITSLTFGKEFTAAIEAKQVAAQEAERAKFVVEKAEQDKKSAIIRAQGEAKSAQLIGQAI 311

Query: 190 ANNPAFITLRKIEAAREIAQTIAHSANKVFLNSDDLLLNLQEMKLEGA 237
           ANNPAFITLRKIEA+REIA TI++SAN+VFLNS+DLLLNLQEM LE A
Sbjct: 312 ANNPAFITLRKIEASREIAHTISNSANRVFLNSNDLLLNLQEMNLESA 359

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147771517|emb|CAN66748.1| hypothetical protein VITISV_005691 [Vitis vinifera]

 Score =  408 bits (1048), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 208/228 (91%), Positives = 220/228 (96%)

Query: 10  VYPEGTHLMVPWFERPVIYDVRARPHLVESTSGSRDLQMVKIGLRVLTRPVADKLPTVYR 69
           VYPEGTHLM+PWFERPVIYDVRARPHLVESTSGSRDLQMVKIGLRVLTRPV D+LP +YR
Sbjct: 60  VYPEGTHLMIPWFERPVIYDVRARPHLVESTSGSRDLQMVKIGLRVLTRPVPDQLPAIYR 119

Query: 70  ALGENYNERVLPSIIHETLKAVVAQYNASQLITQRETVSREIRKILTERAANFNIALDDV 129
            LGENYNERVLPSIIHETLKAVVAQYNASQLITQRE VSREIRKILTERAANFNIALDDV
Sbjct: 120 TLGENYNERVLPSIIHETLKAVVAQYNASQLITQREAVSREIRKILTERAANFNIALDDV 179

Query: 130 SITSLTFGKEFTSAIEAKQVAAQEAERAKYIVEKAEQDKRSAIIRAQGEATSAQLIGQAI 189
           SITSLTFGKEFT+AIEAKQVAAQEAERAK++VEKAEQDK+SAIIRAQGEA SAQLIGQAI
Sbjct: 180 SITSLTFGKEFTAAIEAKQVAAQEAERAKFVVEKAEQDKKSAIIRAQGEAKSAQLIGQAI 239

Query: 190 ANNPAFITLRKIEAAREIAQTIAHSANKVFLNSDDLLLNLQEMKLEGA 237
           ANNPAFITLRKIEA+REIA TI++SAN+VFLNS+DLLLNLQEM LE A
Sbjct: 240 ANNPAFITLRKIEASREIAHTISNSANRVFLNSNDLLLNLQEMNLESA 287

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|71370259|gb|AAZ30377.1| PHB2 [Nicotiana benthamiana]

 Score =  405 bits (1042), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 195/210 (92%), Positives = 205/210 (97%)

Query: 10  VYPEGTHLMVPWFERPVIYDVRARPHLVESTSGSRDLQMVKIGLRVLTRPVADKLPTVYR 69
           VYPEGTH M+PWFERPVIYDVRARPHLVESTSGSRDLQMVKIGLRVLTRPV D+LPTVYR
Sbjct: 60  VYPEGTHFMIPWFERPVIYDVRARPHLVESTSGSRDLQMVKIGLRVLTRPVPDQLPTVYR 119

Query: 70  ALGENYNERVLPSIIHETLKAVVAQYNASQLITQRETVSREIRKILTERAANFNIALDDV 129
            LGENYNERVLPSIIHETLKAVVAQYNASQLITQRE VSREIRKILTERAANFNIALDDV
Sbjct: 120 TLGENYNERVLPSIIHETLKAVVAQYNASQLITQRENVSREIRKILTERAANFNIALDDV 179

Query: 130 SITSLTFGKEFTSAIEAKQVAAQEAERAKYIVEKAEQDKRSAIIRAQGEATSAQLIGQAI 189
           SITSLTFGKEFT+AIEAKQVAAQEAERAK++VEKAEQDKRSAIIRAQGEA SAQLIGQ+I
Sbjct: 180 SITSLTFGKEFTAAIEAKQVAAQEAERAKFVVEKAEQDKRSAIIRAQGEAKSAQLIGQSI 239

Query: 190 ANNPAFITLRKIEAAREIAQTIAHSANKVF 219
           ANNPAFITLRKIEAAREIAQT++H+ANKV+
Sbjct: 240 ANNPAFITLRKIEAAREIAQTMSHAANKVY 269

Source: Nicotiana benthamiana

Species: Nicotiana benthamiana

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359494682|ref|XP_003634822.1| PREDICTED: prohibitin-2 isoform 2 [Vitis vinifera]

 Score =  405 bits (1040), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 205/228 (89%), Positives = 220/228 (96%)

Query: 10  VYPEGTHLMVPWFERPVIYDVRARPHLVESTSGSRDLQMVKIGLRVLTRPVADKLPTVYR 69
           VYPEGTHLM+PWF+RPVIYDVR RPHLVESTSGS DLQMVKIGLRVLTRP+ D+LPT+YR
Sbjct: 62  VYPEGTHLMIPWFDRPVIYDVRTRPHLVESTSGSHDLQMVKIGLRVLTRPLPDQLPTIYR 121

Query: 70  ALGENYNERVLPSIIHETLKAVVAQYNASQLITQRETVSREIRKILTERAANFNIALDDV 129
            LGENYNERVLPSIIHETLKAVVAQYNASQLITQRETVSREIRK+LTERAANFNIALDDV
Sbjct: 122 TLGENYNERVLPSIIHETLKAVVAQYNASQLITQRETVSREIRKLLTERAANFNIALDDV 181

Query: 130 SITSLTFGKEFTSAIEAKQVAAQEAERAKYIVEKAEQDKRSAIIRAQGEATSAQLIGQAI 189
           SITSLTFG+EFT+AIEAKQVAAQEAERAK++VEKAEQDKRSAIIRAQGEA SAQLIGQAI
Sbjct: 182 SITSLTFGREFTAAIEAKQVAAQEAERAKFVVEKAEQDKRSAIIRAQGEAKSAQLIGQAI 241

Query: 190 ANNPAFITLRKIEAAREIAQTIAHSANKVFLNSDDLLLNLQEMKLEGA 237
           ANNPAFITLRKIEA+REIA TI++SANKVFLNS+DLLLNLQEM L+ A
Sbjct: 242 ANNPAFITLRKIEASREIAHTISNSANKVFLNSNDLLLNLQEMNLQSA 289

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	239
TAIR|locus:2121392	288	PHB1 "prohibitin 1" [Arabidops	0.945	0.784	0.898	4.2e-102
TAIR|locus:2024142	286	PHB2 "prohibitin 2" [Arabidops	0.958	0.800	0.873	1e-100
TAIR|locus:2054779	286	PHB6 "AT2G20530" [Arabidopsis	0.945	0.790	0.871	3.1e-99
TAIR|locus:2167588	278	PHB7 "AT5G44140" [Arabidopsis	0.924	0.794	0.805	8.6e-88
ZFIN|ZDB-GENE-030131-3141	302	phb2 "prohibitin 2" [Danio rer	0.928	0.735	0.603	8.9e-70
DICTYBASE|DDB_G0284117	293	phbB "prohibitin" [Dictyosteli	0.916	0.747	0.611	7.2e-68
UNIPROTKB|Q5ZMN3	301	PHB2 "Prohibitin-2" [Gallus ga	0.928	0.737	0.576	1.2e-67
UNIPROTKB|J3KPX7	299	PHB2 "Prohibitin-2" [Homo sapi	0.928	0.742	0.567	5.1e-67
UNIPROTKB|Q99623	299	PHB2 "Prohibitin-2" [Homo sapi	0.928	0.742	0.567	5.1e-67
MGI|MGI:102520	299	Phb2 "prohibitin 2" [Mus muscu	0.928	0.742	0.567	5.1e-67

TAIR|locus:2121392 PHB1 "prohibitin 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 1012 (361.3 bits), Expect = 4.2e-102, P = 4.2e-102
 Identities = 203/226 (89%), Positives = 220/226 (97%)

Query:    10 VYPEGTHLMVPWFERPVIYDVRARPHLVESTSGSRDLQMVKIGLRVLTRPVADKLPTVYR 69
             VYPEGTHLM+PWFERPVIYDVRARP+LVESTSGSRDLQMVKIGLRVLTRP+AD+LP +YR
Sbjct:    58 VYPEGTHLMIPWFERPVIYDVRARPYLVESTSGSRDLQMVKIGLRVLTRPMADQLPEIYR 117

Query:    70 ALGENYNERVLPSIIHETLKAVVAQYNASQLITQRETVSREIRKILTERAANFNIALDDV 129
             +LGENY+ERVLPSII+ETLKAVVAQYNASQLITQRE VSREIRKILTERAANFN+ALDDV
Sbjct:   118 SLGENYSERVLPSIINETLKAVVAQYNASQLITQREAVSREIRKILTERAANFNVALDDV 177

Query:   130 SITSLTFGKEFTSAIEAKQVAAQEAERAKYIVEKAEQDKRSAIIRAQGEATSAQLIGQAI 189
             SIT+LTFGKEFT+AIEAKQVAAQEAERAK+IVEKAEQDKRSA+IRAQGEA SAQLIGQAI
Sbjct:   178 SITNLTFGKEFTAAIEAKQVAAQEAERAKFIVEKAEQDKRSAVIRAQGEAKSAQLIGQAI 237

Query:   190 ANNPAFITLRKIEAAREIAQTIAHSANKVFLNSDDLLLNLQEMKLE 235
             ANN AFITLRKIEAAREIAQTIA+SANKV+L+SDDLLLNLQ M L+
Sbjct:   238 ANNQAFITLRKIEAAREIAQTIANSANKVYLSSDDLLLNLQGMNLD 283

GO:0016020 "membrane" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0005747 "mitochondrial respiratory chain complex I" evidence=IDA

TAIR|locus:2024142 PHB2 "prohibitin 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 999 (356.7 bits), Expect = 1.0e-100, P = 1.0e-100
 Identities = 200/229 (87%), Positives = 217/229 (94%)

Query:    10 VYPEGTHLMVPWFERPVIYDVRARPHLVESTSGSRDLQMVKIGLRVLTRPVADKLPTVYR 69
             VYPEGTH MVPWFERP+IYDVRARP+LVEST+GS DLQMVKIGLRVLTRP+ D+LP +YR
Sbjct:    58 VYPEGTHFMVPWFERPIIYDVRARPYLVESTTGSHDLQMVKIGLRVLTRPMGDRLPQIYR 117

Query:    70 ALGENYNERVLPSIIHETLKAVVAQYNASQLITQRETVSREIRKILTERAANFNIALDDV 129
              LGENY+ERVLPSIIHETLKAVVAQYNASQLITQRE VSREIRKILTERA+NF+IALDDV
Sbjct:   118 TLGENYSERVLPSIIHETLKAVVAQYNASQLITQREAVSREIRKILTERASNFDIALDDV 177

Query:   130 SITSLTFGKEFTSAIEAKQVAAQEAERAKYIVEKAEQDKRSAIIRAQGEATSAQLIGQAI 189
             SIT+LTFGKEFT+AIEAKQVAAQEAERAK+IVEKAEQD+RSA+IRAQGEA SAQLIGQAI
Sbjct:   178 SITTLTFGKEFTAAIEAKQVAAQEAERAKFIVEKAEQDRRSAVIRAQGEAKSAQLIGQAI 237

Query:   190 ANNPAFITLRKIEAAREIAQTIAHSANKVFLNSDDLLLNLQEMKLEGAK 238
             ANN AFITLRKIEAAREIAQTIA SANKV+L+S+DLLLNLQEM LE  K
Sbjct:   238 ANNQAFITLRKIEAAREIAQTIAQSANKVYLSSNDLLLNLQEMNLEPKK 286

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0016020 "membrane" evidence=IEA

GO:0005773 "vacuole" evidence=IDA

GO:0005618 "cell wall" evidence=IDA

GO:0009536 "plastid" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0005747 "mitochondrial respiratory chain complex I" evidence=IDA

GO:0000741 "karyogamy" evidence=RCA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=RCA

GO:0009165 "nucleotide biosynthetic process" evidence=RCA

GO:0009560 "embryo sac egg cell differentiation" evidence=RCA

GO:0009853 "photorespiration" evidence=RCA

GO:0051788 "response to misfolded protein" evidence=RCA

GO:0080129 "proteasome core complex assembly" evidence=RCA

TAIR|locus:2054779 PHB6 "AT2G20530" [Arabidopsis thaliana (taxid:3702)]

 Score = 985 (351.8 bits), Expect = 3.1e-99, P = 3.1e-99
 Identities = 197/226 (87%), Positives = 216/226 (95%)

Query:    10 VYPEGTHLMVPWFERPVIYDVRARPHLVESTSGSRDLQMVKIGLRVLTRPVADKLPTVYR 69
             VYPEGTHLM+PWFERP+IYDVRA+P+LVESTSGSRDLQMVKIGLRVLTRP+AD+LP VYR
Sbjct:    56 VYPEGTHLMIPWFERPIIYDVRAKPYLVESTSGSRDLQMVKIGLRVLTRPMADQLPEVYR 115

Query:    70 ALGENYNERVLPSIIHETLKAVVAQYNASQLITQRETVSREIRKILTERAANFNIALDDV 129
             +LGENY ERVLPSIIHETLKAVVAQYNASQLITQRE+VSREIRKILT RAANF+IALDDV
Sbjct:   116 SLGENYRERVLPSIIHETLKAVVAQYNASQLITQRESVSREIRKILTLRAANFHIALDDV 175

Query:   130 SITSLTFGKEFTSAIEAKQVAAQEAERAKYIVEKAEQDKRSAIIRAQGEATSAQLIGQAI 189
             SIT LTFGKEFT+AIE KQVAAQEAERAK+IVEKAEQDKRSA+IRA+GEA SAQLIGQAI
Sbjct:   176 SITGLTFGKEFTAAIEGKQVAAQEAERAKFIVEKAEQDKRSAVIRAEGEAKSAQLIGQAI 235

Query:   190 ANNPAFITLRKIEAAREIAQTIAHSANKVFLNSDDLLLNLQEMKLE 235
             ANN AF+TLRKIEAAREIAQTI+ SANKV+L+S+DLLLNLQ M L+
Sbjct:   236 ANNQAFLTLRKIEAAREIAQTISRSANKVYLSSNDLLLNLQAMDLD 281

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA;IDA

GO:0005739 "mitochondrion" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0005747 "mitochondrial respiratory chain complex I" evidence=IDA

TAIR|locus:2167588 PHB7 "AT5G44140" [Arabidopsis thaliana (taxid:3702)]

 Score = 877 (313.8 bits), Expect = 8.6e-88, P = 8.6e-88
 Identities = 178/221 (80%), Positives = 196/221 (88%)

Query:    10 VYPEGTHLMVPWFERPVIYDVRARPHLVESTSGSRDLQMVKIGLRVLTRPVADKLPTVYR 69
             VYPEGTH  +P FER +IYDVR+RP++  S +GS DLQ V IGLRVLTRP+ D+LP +YR
Sbjct:    58 VYPEGTHFKIPLFERAIIYDVRSRPYVENSQTGSNDLQTVTIGLRVLTRPMGDRLPEIYR 117

Query:    70 ALGENYNERVLPSIIHETLKAVVAQYNASQLITQRETVSREIRKILTERAANFNIALDDV 129
              LG+NY ERVLPSII+ETLKAVVAQYNAS LITQRE VSREIRKI+TERAA FNIALDDV
Sbjct:   118 TLGQNYGERVLPSIINETLKAVVAQYNASHLITQREAVSREIRKIVTERAAKFNIALDDV 177

Query:   130 SITSLTFGKEFTSAIEAKQVAAQEAERAKYIVEKAEQDKRSAIIRAQGEATSAQLIGQAI 189
             SIT+L FGKEFT AIE KQVAAQEAERAK+IVEKAEQDK+SAIIRAQGEA SAQLIGQAI
Sbjct:   178 SITNLKFGKEFTEAIEKKQVAAQEAERAKFIVEKAEQDKKSAIIRAQGEAKSAQLIGQAI 237

Query:   190 ANNPAFITLRKIEAAREIAQTIAHSANKVFLNSDDLLLNLQ 230
             ANN AFITLRKIEAAREIAQTIA SANKV+LNS DLL++ Q
Sbjct:   238 ANNEAFITLRKIEAAREIAQTIAKSANKVYLNSSDLLISKQ 278

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0016020 "membrane" evidence=IEA;IDA

GO:0005739 "mitochondrion" evidence=IDA

GO:0005747 "mitochondrial respiratory chain complex I" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

ZFIN|ZDB-GENE-030131-3141 phb2 "prohibitin 2" [Danio rerio (taxid:7955)]

 Score = 707 (253.9 bits), Expect = 8.9e-70, P = 8.9e-70
 Identities = 134/222 (60%), Positives = 183/222 (82%)

Query:    10 VYPEGTHLMVPWFERPVIYDVRARPHLVESTSGSRDLQMVKIGLRVLTRPVADKLPTVYR 69
             V  EG H  +PWF+ P+IYD+RARP  + S +GS+DLQMV IGLRVL+RPVA +LP +Y+
Sbjct:    71 VLAEGLHFRMPWFQYPIIYDIRARPRKISSLTGSKDLQMVNIGLRVLSRPVASQLPIMYQ 130

Query:    70 ALGENYNERVLPSIIHETLKAVVAQYNASQLITQRETVSREIRKILTERAANFNIALDDV 129
              LG++Y+ERVLPSI++E LK+VVA++NASQLITQR  VS  IR+ L ERA +FNI LDDV
Sbjct:   131 QLGKDYDERVLPSIVNEVLKSVVAKFNASQLITQRAQVSLLIRRDLIERAKDFNIILDDV 190

Query:   130 SITSLTFGKEFTSAIEAKQVAAQEAERAKYIVEKAEQDKRSAIIRAQGEATSAQLIGQAI 189
             +IT L+F KE+T+A+EAKQVA QEA+RA++ VEKA+QD+R  II+A+GEA +A+++GQA+
Sbjct:   191 AITELSFSKEYTAAVEAKQVAQQEAQRAQFFVEKAKQDQRQKIIQAEGEAEAAKMLGQAV 250

Query:   190 ANNPAFITLRKIEAAREIAQTIAHSANKVFLNSDDLLLNLQE 231
               NP ++ LR+I AA+ IA+T+A S NKV+L++D L+LNLQ+
Sbjct:   251 TKNPGYLKLRRIRAAQNIAKTVAASQNKVYLSADSLVLNLQD 292

GO:0016020 "membrane" evidence=IEA

DICTYBASE|DDB_G0284117 phbB "prohibitin" [Dictyostelium discoideum (taxid:44689)]

 Score = 689 (247.6 bits), Expect = 7.2e-68, P = 7.2e-68
 Identities = 134/219 (61%), Positives = 176/219 (80%)

Query:    10 VYPEGTHLMVPWFERPVIYDVRARPHLVESTSGSRDLQMVKIGLRVLTRPVADKLPTVYR 69
             VY EGTH +VPWFER  IYDVRA+P  + S +GS+DLQMV I +RVL++P   +LP +YR
Sbjct:    63 VYNEGTHFIVPWFERAEIYDVRAKPRSISSLTGSKDLQMVNITIRVLSKPKVSQLPAIYR 122

Query:    70 ALGENYNERVLPSIIHETLKAVVAQYNASQLITQRETVSREIRKILTERAANFNIALDDV 129
              LG++Y+ERVLPSI++E LK++VAQ+NASQLITQRE VSR I K L +RA +FNI LDDV
Sbjct:   123 TLGKDYDERVLPSIVNEILKSIVAQFNASQLITQREQVSRLIFKRLVDRAKDFNIELDDV 182

Query:   130 SITSLTFGKEFTSAIEAKQVAAQEAERAKYIVEKAEQDKRSAIIRAQGEATSAQLIGQAI 189
             SIT L FG+E+ +AIEAKQVA QEAERA+++VEKA QDKRS I++A+GEA SAQLI  AI
Sbjct:   183 SITHLNFGREYAAAIEAKQVAQQEAERARFLVEKALQDKRSIIVKAEGEAQSAQLINDAI 242

Query:   190 ANNPAFITLRKIEAAREIAQTIAHSANKVFLNSDDLLLN 228
               +P  + LR +EA++EIA  ++ S NK++++++ LLLN
Sbjct:   243 KQSPYLVQLRTLEASKEIAHILSKSPNKLYISNETLLLN 281

GO:0016020 "membrane" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

GO:0016021 "integral to membrane" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

UNIPROTKB|Q5ZMN3 PHB2 "Prohibitin-2" [Gallus gallus (taxid:9031)]

 Score = 687 (246.9 bits), Expect = 1.2e-67, P = 1.2e-67
 Identities = 128/222 (57%), Positives = 184/222 (82%)

Query:    10 VYPEGTHLMVPWFERPVIYDVRARPHLVESTSGSRDLQMVKIGLRVLTRPVADKLPTVYR 69
             +  EG H  +PWF+ P+IYD+RARP  + S +GS+DLQMV I LRVLTRP A +LP++Y+
Sbjct:    63 ILAEGLHFRIPWFQYPIIYDIRARPRKISSPTGSKDLQMVNISLRVLTRPNAAELPSMYQ 122

Query:    70 ALGENYNERVLPSIIHETLKAVVAQYNASQLITQRETVSREIRKILTERAANFNIALDDV 129
              LG +Y ERVLPSI++E LK+VVA++NASQLITQR  VS  IR+ LTERA +F++ LDDV
Sbjct:   123 RLGLDYEERVLPSIVNEVLKSVVAKFNASQLITQRAQVSLLIRRELTERAKDFSLILDDV 182

Query:   130 SITSLTFGKEFTSAIEAKQVAAQEAERAKYIVEKAEQDKRSAIIRAQGEATSAQLIGQAI 189
             +IT L+F +E+T+A+EAKQVA QEA+RA+++VEKA+Q+++  I++A+GEAT+A+++G+A+
Sbjct:   183 AITELSFSREYTAAVEAKQVAQQEAQRAQFLVEKAKQEQKQKIVQAEGEATAAKMLGEAL 242

Query:   190 ANNPAFITLRKIEAAREIAQTIAHSANKVFLNSDDLLLNLQE 231
             + NP +I LRKI AA+ I++TIA S N+V+L +D+L+LNLQ+
Sbjct:   243 SRNPGYIKLRKIRAAQNISKTIAGSQNRVYLTADNLVLNLQD 284

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

UNIPROTKB|J3KPX7 PHB2 "Prohibitin-2" [Homo sapiens (taxid:9606)]

 Score = 681 (244.8 bits), Expect = 5.1e-67, P = 5.1e-67
 Identities = 126/222 (56%), Positives = 183/222 (82%)

Query:    10 VYPEGTHLMVPWFERPVIYDVRARPHLVESTSGSRDLQMVKIGLRVLTRPVADKLPTVYR 69
             +  EG H  +PWF+ P+IYD+RARP  + S +GS+DLQMV I LRVL+RP A +LP++Y+
Sbjct:    63 ILAEGLHFRIPWFQYPIIYDIRARPRKISSPTGSKDLQMVNISLRVLSRPNAQELPSMYQ 122

Query:    70 ALGENYNERVLPSIIHETLKAVVAQYNASQLITQRETVSREIRKILTERAANFNIALDDV 129
              LG +Y ERVLPSI++E LK+VVA++NASQLITQR  VS  IR+ LTERA +F++ LDDV
Sbjct:   123 RLGLDYEERVLPSIVNEVLKSVVAKFNASQLITQRAQVSLLIRRELTERAKDFSLILDDV 182

Query:   130 SITSLTFGKEFTSAIEAKQVAAQEAERAKYIVEKAEQDKRSAIIRAQGEATSAQLIGQAI 189
             +IT L+F +E+T+A+EAKQVA QEA+RA+++VEKA+Q++R  I++A+GEA +A+++G+A+
Sbjct:   183 AITELSFSREYTAAVEAKQVAQQEAQRAQFLVEKAKQEQRQKIVQAEGEAEAAKMLGEAL 242

Query:   190 ANNPAFITLRKIEAAREIAQTIAHSANKVFLNSDDLLLNLQE 231
             + NP +I LRKI AA+ I++TIA S N+++L +D+L+LNLQ+
Sbjct:   243 SKNPGYIKLRKIRAAQNISKTIATSQNRIYLTADNLVLNLQD 284

GO:0016020 "membrane" evidence=IEA

UNIPROTKB|Q99623 PHB2 "Prohibitin-2" [Homo sapiens (taxid:9606)]

 Score = 681 (244.8 bits), Expect = 5.1e-67, P = 5.1e-67
 Identities = 126/222 (56%), Positives = 183/222 (82%)

Query:    10 VYPEGTHLMVPWFERPVIYDVRARPHLVESTSGSRDLQMVKIGLRVLTRPVADKLPTVYR 69
             +  EG H  +PWF+ P+IYD+RARP  + S +GS+DLQMV I LRVL+RP A +LP++Y+
Sbjct:    63 ILAEGLHFRIPWFQYPIIYDIRARPRKISSPTGSKDLQMVNISLRVLSRPNAQELPSMYQ 122

Query:    70 ALGENYNERVLPSIIHETLKAVVAQYNASQLITQRETVSREIRKILTERAANFNIALDDV 129
              LG +Y ERVLPSI++E LK+VVA++NASQLITQR  VS  IR+ LTERA +F++ LDDV
Sbjct:   123 RLGLDYEERVLPSIVNEVLKSVVAKFNASQLITQRAQVSLLIRRELTERAKDFSLILDDV 182

Query:   130 SITSLTFGKEFTSAIEAKQVAAQEAERAKYIVEKAEQDKRSAIIRAQGEATSAQLIGQAI 189
             +IT L+F +E+T+A+EAKQVA QEA+RA+++VEKA+Q++R  I++A+GEA +A+++G+A+
Sbjct:   183 AITELSFSREYTAAVEAKQVAQQEAQRAQFLVEKAKQEQRQKIVQAEGEAEAAKMLGEAL 242

Query:   190 ANNPAFITLRKIEAAREIAQTIAHSANKVFLNSDDLLLNLQE 231
             + NP +I LRKI AA+ I++TIA S N+++L +D+L+LNLQ+
Sbjct:   243 SKNPGYIKLRKIRAAQNISKTIATSQNRIYLTADNLVLNLQD 284

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0033147 "negative regulation of intracellular estrogen receptor signaling pathway" evidence=IEA

GO:0033600 "negative regulation of mammary gland epithelial cell proliferation" evidence=IEA

GO:0060744 "mammary gland branching involved in thelarche" evidence=IEA

GO:0060749 "mammary gland alveolus development" evidence=IEA

GO:0060762 "regulation of branching involved in mammary gland duct morphogenesis" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IDA

GO:0005634 "nucleus" evidence=ISS

GO:0005743 "mitochondrial inner membrane" evidence=ISS

GO:0030331 "estrogen receptor binding" evidence=NAS

GO:0005739 "mitochondrion" evidence=IDA

MGI|MGI:102520 Phb2 "prohibitin 2" [Mus musculus (taxid:10090)]

 Score = 681 (244.8 bits), Expect = 5.1e-67, P = 5.1e-67
 Identities = 126/222 (56%), Positives = 183/222 (82%)

Query:    10 VYPEGTHLMVPWFERPVIYDVRARPHLVESTSGSRDLQMVKIGLRVLTRPVADKLPTVYR 69
             +  EG H  +PWF+ P+IYD+RARP  + S +GS+DLQMV I LRVL+RP A +LP++Y+
Sbjct:    63 ILAEGLHFRIPWFQYPIIYDIRARPRKISSPTGSKDLQMVNISLRVLSRPNAQELPSMYQ 122

Query:    70 ALGENYNERVLPSIIHETLKAVVAQYNASQLITQRETVSREIRKILTERAANFNIALDDV 129
              LG +Y ERVLPSI++E LK+VVA++NASQLITQR  VS  IR+ LTERA +F++ LDDV
Sbjct:   123 RLGLDYEERVLPSIVNEVLKSVVAKFNASQLITQRAQVSLLIRRELTERAKDFSLILDDV 182

Query:   130 SITSLTFGKEFTSAIEAKQVAAQEAERAKYIVEKAEQDKRSAIIRAQGEATSAQLIGQAI 189
             +IT L+F +E+T+A+EAKQVA QEA+RA+++VEKA+Q++R  I++A+GEA +A+++G+A+
Sbjct:   183 AITELSFSREYTAAVEAKQVAQQEAQRAQFLVEKAKQEQRQKIVQAEGEAEAAKMLGEAL 242

Query:   190 ANNPAFITLRKIEAAREIAQTIAHSANKVFLNSDDLLLNLQE 231
             + NP +I LRKI AA+ I++TIA S N+++L +D+L+LNLQ+
Sbjct:   243 SKNPGYIKLRKIRAAQNISKTIATSQNRIYLTADNLVLNLQD 284

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0005743 "mitochondrial inner membrane" evidence=IDA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0033147 "negative regulation of intracellular estrogen receptor signaling pathway" evidence=IGI;IMP

GO:0033600 "negative regulation of mammary gland epithelial cell proliferation" evidence=IMP

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=ISO;IDA

GO:0060744 "mammary gland branching involved in thelarche" evidence=IMP

GO:0060749 "mammary gland alveolus development" evidence=IMP

GO:0060762 "regulation of branching involved in mammary gland duct morphogenesis" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
A9UMS3	PHB2_XENTR	No assigned EC number	0.5739	0.9330	0.7408	yes	no
Q99623	PHB2_HUMAN	No assigned EC number	0.5650	0.9330	0.7458	yes	no
Q5XIH7	PHB2_RAT	No assigned EC number	0.5650	0.9330	0.7458	yes	no
O35129	PHB2_MOUSE	No assigned EC number	0.5650	0.9330	0.7458	yes	no
P50085	PHB2_YEAST	No assigned EC number	0.5541	0.9623	0.7419	yes	no
O49460	PHB1_ARATH	No assigned EC number	0.8982	0.9456	0.7847	yes	no
Q9ZNT7	PHB2_ARATH	No assigned EC number	0.8733	0.9581	0.8006	no	no
Q2HJ97	PHB2_BOVIN	No assigned EC number	0.5650	0.9330	0.7458	yes	no
Q5RB19	PHB2_PONAB	No assigned EC number	0.5605	0.9330	0.7458	yes	no
O94550	PHB2_SCHPO	No assigned EC number	0.5745	0.9330	0.7743	yes	no
Q5ZMN3	PHB2_CHICK	No assigned EC number	0.5739	0.9330	0.7408	yes	no
P50093	PHB2_CAEEL	No assigned EC number	0.5636	0.9205	0.7482	yes	no
Q54Q31	PHB2_DICDI	No assigned EC number	0.6118	0.9163	0.7474	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	239
cd03401	196	cd03401, Band_7_prohibitin, Band_7_prohibitin	1e-100
smart00244	160	smart00244, PHB, prohibitin homologues	9e-30
pfam01145	177	pfam01145, Band_7, SPFH domain / Band 7 family	1e-20
COG0330	291	COG0330, HflC, Membrane protease subunits, stomati	3e-20
cd02106	121	cd02106, Band_7, The band 7 domain of flotillin (r	2e-18
cd03405	242	cd03405, Band_7_HflC, Band_7_HflC: The band 7 doma	3e-10
cd03403	215	cd03403, Band_7_stomatin_like, Band_7_stomatin_lik	5e-10
cd03400	124	cd03400, Band_7_1, A subgroup of the band 7 domain	2e-07
cd03407	262	cd03407, Band_7_4, A subgroup of the band 7 domain	6e-06

>gnl|CDD|239495 cd03401, Band_7_prohibitin, Band_7_prohibitin

 Score =  288 bits (739), Expect = e-100
 Identities = 118/173 (68%), Positives = 145/173 (83%)

Query: 10  VYPEGTHLMVPWFERPVIYDVRARPHLVESTSGSRDLQMVKIGLRVLTRPVADKLPTVYR 69
           VY EG H  +PWF++P+I+DVRARP  +EST+GS+DLQMV I LRVL RP A +LP +Y+
Sbjct: 24  VYGEGLHFRIPWFQKPIIFDVRARPRNIESTTGSKDLQMVNITLRVLFRPDASQLPRIYQ 83

Query: 70  ALGENYNERVLPSIIHETLKAVVAQYNASQLITQRETVSREIRKILTERAANFNIALDDV 129
            LGE+Y+ERVLPSII+E LKAVVAQ+ A +LITQRE VS  IR+ LTERA +F I LDDV
Sbjct: 84  NLGEDYDERVLPSIINEVLKAVVAQFTAEELITQREEVSALIREALTERAKDFGIILDDV 143

Query: 130 SITSLTFGKEFTSAIEAKQVAAQEAERAKYIVEKAEQDKRSAIIRAQGEATSA 182
           SIT LTF KEFT A+EAKQVA QEAERAK++VEKAEQ+K++A+IRA+GEA +A
Sbjct: 144 SITHLTFSKEFTKAVEAKQVAQQEAERAKFVVEKAEQEKQAAVIRAEGEAEAA 196

A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup group includes proteins similar to prohibitin (a lipid raft-associated integral membrane protein). Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. These microdomains in addition to being stable scaffolds may also be also dynamic units with their own regulatory functions. Prohibitin is a mitochondrial inner-membrane protein which may act as a chaperone for the stabilization of mitochondrial proteins. Human prohibitin forms a heter-oligomeric complex with Bap-37 (prohibitin 2, a band 7 domain carrying homologue). This complex may protect non-assembled membrane proteins against proteolysis by the m-AAA protease. Prohibitin and Bap-37 yeast homologues have been implicated in yeast longevity and, in the maintenance of mitochondrial morphology. Length = 196

>gnl|CDD|214581 smart00244, PHB, prohibitin homologues

 Score =  108 bits (272), Expect = 9e-30
 Identities = 41/138 (29%), Positives = 70/138 (50%), Gaps = 5/138 (3%)

Query: 13  EGTHLMVPWFERPVIYDVRARPHLV-ESTSGSRDLQMVKIGLRVLTRPVADKLPTVYRAL 71
            G H ++P+ +     D+RA+   V    + ++D   V +   V  R V D L  VYR  
Sbjct: 26  PGLHFLIPFIDDVKKVDLRAQTDDVPPQETITKDNVKVSVDAVVYYR-VLDPLRAVYRV- 83

Query: 72  GENYNERVLPSIIHETLKAVVAQYNASQLIT-QRETVSREIRKILTERAANFNIALDDVS 130
             + +  V+  +   TL++V+ +    +L+T QRE +S  IR+ L E A  + I ++DV 
Sbjct: 84  -LDADYAVIEQLAQTTLRSVIGKRTLDELLTDQREKISENIREELNEAAEAWGIKVEDVE 142

Query: 131 ITSLTFGKEFTSAIEAKQ 148
           I  +   +E   A+EA+Q
Sbjct: 143 IKDIRLPEEIKEAMEAQQ 160

prohibitin homologues. Length = 160

>gnl|CDD|216327 pfam01145, Band_7, SPFH domain / Band 7 family

 Score = 85.1 bits (211), Expect = 1e-20
 Identities = 47/161 (29%), Positives = 81/161 (50%), Gaps = 5/161 (3%)

Query: 10  VYPEGTHLMVPWFERPVIYDVRARPHLVE--STSGSRDLQMVKIGLRVLTRPVADKLPTV 67
           V   G H  +P+ +   + D R +   V    T  ++D   V + + V  R V D    V
Sbjct: 20  VLGPGLHFKLPFIQTITVVDTRLQTLEVTVDITVLTKDGVPVNVDVTVQYR-VEDPAKLV 78

Query: 68  YRALGENYNERVLPSIIHETLKAVVAQYNASQLITQRETVSREIRKILTERAANFNIALD 127
               GE   + +L  ++   L+ V+A+Y   +L++ RE +++E+++ L E    + + ++
Sbjct: 79  ANYTGEEDLQELLRPLVRSALREVIARYTLDELLSNREEIAQEVKEALQEELEKYGLEIE 138

Query: 128 DVSITSLTFGKEFTSAIEAKQVAAQEAERAKYIVEKAEQDK 168
           DV IT +    E   AIE KQ A QEAE A+  +E+AE + 
Sbjct: 139 DVQITDIDPPPEIAEAIEEKQAAEQEAEEAE--IERAEAEA 177

This family has been called SPFH, Band 7 or PHB domain. Recent phylogenetic analysis has shown this domain to be a slipin or Stomatin-like integral membrane domain conserved from protozoa to mammals. Length = 177

>gnl|CDD|223407 COG0330, HflC, Membrane protease subunits, stomatin/prohibitin homologs [Posttranslational modification, protein turnover, chaperones]

 Score = 86.7 bits (215), Expect = 3e-20
 Identities = 61/251 (24%), Positives = 110/251 (43%), Gaps = 41/251 (16%)

Query: 13  EGTHLMVPWFERPVIYDVR--ARPHLVESTS----GSRDLQMVKIGLRVLTRPVADKLPT 66
            G H  +P+ E      VR   R   ++        ++D  +V +   V  R V D    
Sbjct: 45  PGLHFKIPFPEAIEEVVVRVDLRERTLDVGPPQEVITKDNVIVSVDAVVQYR-VTDPQKA 103

Query: 67  VYRALGENYNERVLPSIIHETLKAVVAQYNASQLITQRET-VSREIRKILTERAANFNIA 125
           VY        E  L  ++   L++V+ +    +L+T+R   ++ +IR+IL E A  + I 
Sbjct: 104 VYNVENA---EAALRQLVQSALRSVIGRMTLDELLTERRAEINAKIREILDEAADPWGIK 160

Query: 126 LDDVSITSLTFGKEFTSAIEAKQVAAQEAERAKYIVEKAEQDKRSAIIRAQGEATSAQLI 185
           + DV I  +   +E  +A+E KQ+AA+  +RA+  + +AE + ++AI+RA+GEA +A ++
Sbjct: 161 VVDVEIKDIDPPEEVQAAME-KQMAAERDKRAE--ILEAEGEAQAAILRAEGEAEAAIIL 217

Query: 186 GQAIA------------------------NNPAFITLRKIEAAREIAQTIAHSANKVFLN 221
            +A A                          P  +  R +E   EIA       +KV + 
Sbjct: 218 AEAEAEAEVIARAEADAAKIIAAALREAPAAPQALAQRYLEELLEIALA---GNSKVVVV 274

Query: 222 SDDLLLNLQEM 232
            +     +  +
Sbjct: 275 PNSAGGAILGL 285

Length = 291

>gnl|CDD|239024 cd02106, Band_7, The band 7 domain of flotillin (reggie) like proteins

 Score = 77.8 bits (192), Expect = 2e-18
 Identities = 27/123 (21%), Positives = 52/123 (42%), Gaps = 2/123 (1%)

Query: 26  VIYDVRARPHLVESTSGSRDLQMVKIGLRVLTRPVADKLPTVYRALGENYNERVLPSIIH 85
            I   R    +      ++D   V++   V  R V D +  +Y        E  L  +  
Sbjct: 1   RIDLRRQTLDVPPQEVLTKDNVPVRVDAVVQYR-VVDPVKALYNVRDPED-EEALRQLAQ 58

Query: 86  ETLKAVVAQYNASQLITQRETVSREIRKILTERAANFNIALDDVSITSLTFGKEFTSAIE 145
             L++V+ +    +L+  R+ ++ E+R+ L E    + I + DV I  +   +E   A+E
Sbjct: 59  SALRSVIGKMTLDELLEDRDEIAAEVREALQEDLDKYGIEVVDVRIKDIDPPEEVQEAME 118

Query: 146 AKQ 148
            +Q
Sbjct: 119 DRQ 121

This group contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic HflK/C plays a role in the decision between lysogenic and lytic cycle growth during lambda phage infection. Flotillins have been implicated in the progression of prion disease, in the pathogenesis of neurodegenerative diseases such as Parkinson's and Alzheimer's disease and, in cancer invasion and metastasis. Mutations in the podicin gene give rise to autosomal recessive steroid resistant nephritic syndrome. Length = 121

>gnl|CDD|239499 cd03405, Band_7_HflC, Band_7_HflC: The band 7 domain of flotillin (reggie) like proteins

 Score = 58.0 bits (141), Expect = 3e-10
 Identities = 35/150 (23%), Positives = 68/150 (45%), Gaps = 22/150 (14%)

Query: 68  YRALG--ENYNERVLPSIIHETLKAVVAQYNASQLI-TQRETVSREIRKILTERAANFNI 124
           Y+A+G  E   E  L  I++  L+A   +    +L+  +R  +  EIR+ + E A    I
Sbjct: 79  YQAVGGEERAAETRLDQIVNSALRAEFGKRTLIELVSGERGELMEEIRRAVAEEAKELGI 138

Query: 125 ALDDVSITSLTFGKEFTSAI----------EAKQVAAQEAERAKYIVEKAEQD------- 167
            + DV I  +   +E + ++           A +  A+  E A+ I   A+++       
Sbjct: 139 EVVDVRIKRIDLPEEVSESVYRRMRAERERIAAEFRAEGEEEAERIRADADRERTVILAE 198

Query: 168 --KRSAIIRAQGEATSAQLIGQAIANNPAF 195
             + +  IR +G+A +A++  +A   +P F
Sbjct: 199 AYREAQEIRGEGDAEAARIYAEAYGKDPEF 228

This group includes proteins similar to prokaryotic HlfC (High frequency of lysogenization C). Although many members of the band 7 family are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflC is an integral membrane protein which may localize to the plasma membrane. HflC associates with another band 7 family member (HflK) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during lambda phage infection. Length = 242

>gnl|CDD|239497 cd03403, Band_7_stomatin_like, Band_7_stomatin_like: A subgroup of the band 7 domain of flotillin (reggie) like proteins similar to stomatin and podicin (two lipid raft-associated integral membrane proteins)

 Score = 57.2 bits (139), Expect = 5e-10
 Identities = 41/131 (31%), Positives = 71/131 (54%), Gaps = 17/131 (12%)

Query: 87  TLKAVVAQYNASQLITQRETVSREIRKILTERAANFNIALDDVSITSLTFGKEFTSAIEA 146
           TL++V+ +    +L+++RE ++ E+ +IL E    + + ++ V I  +   +E   A+  
Sbjct: 93  TLRSVIGKMELDELLSEREEINAELVEILDEATDPWGVKVERVEIKDIILPQEIQEAMA- 151

Query: 147 KQVAAQEAERAKYIVEKAEQDKRSAIIRAQGEATSAQLIGQA---IANNPAFITLRKIEA 203
           KQ    EAER          +KR+ II A+GE  +A L+ +A    A NPA + LR++E 
Sbjct: 152 KQA---EAER----------EKRAKIIEAEGERQAAILLAEAAKQAAINPAALQLRELET 198

Query: 204 AREIAQTIAHS 214
             EIA+  A +
Sbjct: 199 LEEIAKEAAST 209

Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Stomatin is widely expressed and, highly expressed in red blood cells. It localizes predominantly to the plasma membrane and to intracellular vesicles of the endocytic pathway, where it is present in higher order homo-oligomeric complexes (of between 9 and 12 monomers). Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and, is implicated in trafficking of Glut1 glucose transporters. Prohibitin is a mitochondrial inner-membrane protein hypothesized to act as a chaperone for the stabilization of mitochondrial proteins. Podicin localizes to the plasma membrane of podocyte foot processes and, is found in higher order oligomers. Podocin plays a role in regulating glomerular permeability. Mutations in the podicin gene give rise to autosomal recessive steroid resistant nephritic syndrome. This group also contains proteins similar to three Caenorhabditis elegans proteins: UNC-1, UNC-24 and, MEC-2. Mutations in the unc-1 and unc-24 genes result in abnormal motion and altered patterns of sensitivity to volatile anesthetics. MEC-2 and UNC-24 proteins interact with MEC-4 which is part of the degenerin channel complex required for response to gentle body touch. Length = 215

>gnl|CDD|239494 cd03400, Band_7_1, A subgroup of the band 7 domain of flotillin (reggie) like proteins

 Score = 48.5 bits (116), Expect = 2e-07
 Identities = 24/101 (23%), Positives = 47/101 (46%), Gaps = 1/101 (0%)

Query: 49  VKIGLRVLTRPVADKLPTVYRALGENYNERVLPSIIHETLKAVVAQYNASQLI-TQRETV 107
           +   + V  R   +K   V+  LG +Y  +++       ++ V  +Y A Q+  T+R+ +
Sbjct: 24  INADVSVQYRINPNKAAAVHSKLGTDYARKIVRPTFRSLVREVTGRYTAEQIYSTKRKEI 83

Query: 108 SREIRKILTERAANFNIALDDVSITSLTFGKEFTSAIEAKQ 148
              I+K L E      + L++V + ++    +   AIEAK 
Sbjct: 84  ESAIKKELIEEFVGDGLILEEVLLRNIKLPDQIADAIEAKL 124

This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic HflK/C plays a role in the decision between lysogenic and lytic cycle growth during lambda phage infection. Flotillins have been implicated in the progression of prion disease, in the pathogenesis of neurodegenerative diseases such as Parkinson's and Alzheimer's disease and, in cancer invasion and metastasis. Mutations in the podicin gene give rise to autosomal recessive steroid resistant nephritic syndrome. Length = 124

>gnl|CDD|239501 cd03407, Band_7_4, A subgroup of the band 7 domain of flotillin (reggie) like proteins

 Score = 45.8 bits (109), Expect = 6e-06
 Identities = 27/128 (21%), Positives = 52/128 (40%), Gaps = 14/128 (10%)

Query: 87  TLKAVVAQYNASQLITQRETVSREIRKILTERAANFNIALDDVSITSLTFGKEFTSAIEA 146
            L+A + +    +L  Q++ +++ + + L E  + +   +    IT +    E   A+  
Sbjct: 92  VLRARIPKLTLDELFEQKDEIAKAVEEELREAMSRYGFEIVATLITDIDPDAEVKRAMNE 151

Query: 147 KQVAAQEAERAKYIVEKAEQDKRSAIIRAQGEATSAQLIGQAIANNPAFITLRKIEAARE 206
              A ++   A   V KAE +K   I  A+ +A + +L G   A           E  + 
Sbjct: 152 INAAQRQRVAA---VHKAEAEKIKDIKAAEADAEAKRLQGVGAA-----------EQRQA 197

Query: 207 IAQTIAHS 214
           IA  +  S
Sbjct: 198 IADGLRES 205

This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic HflK/C plays a role in the decision between lysogenic and lytic cycle growth during lambda phage infection. Flotillins have been implicated in the progression of prion disease, in the pathogenesis of neurodegenerative diseases such as Parkinson's and Alzheimer's disease and, in cancer invasion and metastasis. Mutations in the podicin gene give rise to autosomal recessive steroid resistant nephritic syndrome. Length = 262

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	239
KOG3090	290	consensus Prohibitin-like protein [Posttranslation	100.0
cd03407	262	Band_7_4 A subgroup of the band 7 domain of flotil	100.0
PRK11029	334	FtsH protease regulator HflC; Provisional	100.0
TIGR01932	317	hflC HflC protein. HflK and HflC are paralogs enco	100.0
TIGR01933	261	hflK HflK protein. HflK and HflC are paralogs enco	100.0
cd03405	242	Band_7_HflC Band_7_HflC: The band 7 domain of flot	100.0
cd03401	196	Band_7_prohibitin Band_7_prohibitin. A subgroup of	100.0
PRK10930	419	FtsH protease regulator HflK; Provisional	100.0
cd03403	215	Band_7_stomatin_like Band_7_stomatin_like: A subgr	100.0
KOG3083	271	consensus Prohibitin [Posttranslational modificati	100.0
cd03404	266	Band_7_HflK Band_7_HflK: The band 7 domain of flot	100.0
cd03406	280	Band_7_3 A subgroup of the band 7 domain of flotil	100.0
COG0330	291	HflC Membrane protease subunits, stomatin/prohibit	99.98
KOG2621	288	consensus Prohibitins and stomatins of the PID sup	99.98
KOG2620	301	consensus Prohibitins and stomatins of the PID sup	99.97
cd03402	219	Band_7_2 A subgroup of the band 7 domain of flotil	99.97
PF01145	179	Band_7: SPFH domain / Band 7 family; InterPro: IPR	99.96
smart00244	160	PHB prohibitin homologues. prohibitin homologues	99.95
cd03400	124	Band_7_1 A subgroup of the band 7 domain of flotil	99.9
KOG2962	322	consensus Prohibitin-related membrane protease sub	99.85
cd03399	128	Band_7_flotillin Band_7_flotillin: a subgroup of t	99.8
cd03408	207	Band_7_5 A subgroup of the band 7 domain of flotil	99.79
KOG2668	428	consensus Flotillins [Intracellular trafficking, s	99.75
COG2268	548	Uncharacterized protein conserved in bacteria [Fun	99.68
cd02106	121	Band_7 The band 7 domain of flotillin (reggie) lik	99.67
PF13421	211	Band_7_1: SPFH domain-Band 7 family	99.08
PTZ00491	850	major vault protein; Provisional	98.32
COG4260	345	Membrane protease subunit, stomatin/prohibitin fam	98.25
PF12127	316	YdfA_immunity: SigmaW regulon antibacterial; Inter	97.85
PRK13665	316	hypothetical protein; Provisional	97.5
COG1580	159	FliL Flagellar basal body-associated protein [Cell	96.38
PF11978	118	MVP_shoulder: Shoulder domain; InterPro: IPR021870	95.12
COG4864	328	Uncharacterized protein conserved in bacteria [Fun	93.66
cd03405	242	Band_7_HflC Band_7_HflC: The band 7 domain of flot	93.29
PRK12785	166	fliL flagellar basal body-associated protein FliL;	93.25
PF03748	99	FliL: Flagellar basal body-associated protein FliL	92.55
PRK07718	142	fliL flagellar basal body-associated protein FliL;	92.49
cd03404	266	Band_7_HflK Band_7_HflK: The band 7 domain of flot	92.37
PRK11029	334	FtsH protease regulator HflC; Provisional	91.07
PRK08455	182	fliL flagellar basal body-associated protein FliL;	91.06
PRK05697	137	flagellar basal body-associated protein FliL-like	90.26
PRK06654	181	fliL flagellar basal body-associated protein FliL;	90.16
PRK07021	162	fliL flagellar basal body-associated protein FliL;	89.75
TIGR01932	317	hflC HflC protein. HflK and HflC are paralogs enco	89.57
cd03407	262	Band_7_4 A subgroup of the band 7 domain of flotil	86.87
PLN03086	567	PRLI-interacting factor K; Provisional	83.72
PRK05696	170	fliL flagellar basal body-associated protein FliL;	81.34
cd03403	215	Band_7_stomatin_like Band_7_stomatin_like: A subgr	81.23

>KOG3090 consensus Prohibitin-like protein [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=8.9e-43  Score=276.00  Aligned_cols=234  Identities=79%  Similarity=1.134  Sum_probs=226.4

Q ss_pred             CcCCCC-ccccCCcceEEcccccceEEEEeeeeeEeeeecccccCceeEEEEEEEEEeeCCCCHHHHHHHhCcccccccc
Q 026375            2 KNLDLF-ACVYPEGTHLMVPWFERPVIYDVRARPHLVESTSGSRDLQMVKIGLRVLTRPVADKLPTVYRALGENYNERVL   80 (239)
Q Consensus         2 ~rfG~~-~~~~~pG~~~~~P~~~~v~~v~~~~~~~~~~~~~~T~D~~~v~v~~~v~y~i~~~~~~~~~~~~~~~~~~~~l   80 (239)
                      -|+|-+ .++++.|+||.+||+++...||+|.++..+.....|+|-+.|++...|.-|++.+..+.+|+++|.+|.+..|
T Consensus        51 nRi~Gik~~iy~EGtHf~iPwfe~pIiYDvRarP~~i~S~tGskDLQmVnI~lRVLsRP~~~~Lp~iyrtLG~~y~ERVL  130 (290)
T KOG3090|consen   51 NRIGGIKDDIYPEGTHFRIPWFERPIIYDVRARPRLISSPTGSKDLQMVNIGLRVLSRPMADQLPEIYRTLGQNYDERVL  130 (290)
T ss_pred             eccccchhccccCCceEeeeccccceeeeeccCcccccCCCCCcceeEEEeeeEEecCCChhhhHHHHHHhccCcchhhh
Confidence            366665 5789999999999999999999999999999889999999999999999999999999999999999999999


Q ss_pred             chHHHHHHHHHHhhcCHhHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEEeecccCCHHHHHHHHHHHHHHHHHHHHHHH
Q 026375           81 PSIIHETLKAVVAQYNASQLITQRETVSREIRKILTERAANFNIALDDVSITSLTFGKEFTSAIEAKQVAAQEAERAKYI  160 (239)
Q Consensus        81 ~~~v~~~lr~~~~~~~~~ei~~~R~~i~~~i~~~l~~~l~~~Gi~i~~v~i~~i~~p~~~~~ai~~k~~A~q~ae~~~~~  160 (239)
                      .+++.+.++.++++|+..++++.|++.+..+++.|-++..++.|.+++|.|+++.|.+++..++|+||+|+|+++|+++-
T Consensus       131 PSIinEvLKaVVAqfNASqLITQRe~VSrliRk~L~eRA~~Fni~LDDVSiT~l~F~~efTaAiEaKQvA~QeAqRA~F~  210 (290)
T KOG3090|consen  131 PSIINEVLKAVVAQFNASQLITQREQVSRLIRKILTERAADFNIALDDVSITELTFGKEFTAAIEAKQVAAQEAQRAKFI  210 (290)
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhccceEeecceeeeeecCHHHHHHHHHHHHHHHHHhhhhhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHHhhcChhhHHHHHHHHHHHHHHHhcCCCCEEEEcCCcccccccccccc
Q 026375          161 VEKAEQDKRSAIIRAQGEATSAQLIGQAIANNPAFITLRKIEAAREIAQTIAHSANKVFLNSDDLLLNLQEMKLE  235 (239)
Q Consensus       161 ~~~Aeaea~a~~~~Aegea~a~~~~a~a~~~~p~~~~~~~le~~~~~a~~~~~~~~~i~l~~~~~~~~~~~~~~~  235 (239)
                      ++.|+.+++..+++|||||++.+++++|+.++|.++.+|++|+-+++|+.+++++|++||++++.++|+.++.++
T Consensus       211 VekA~qek~~~ivrAqGEaksAqliGeAi~nn~~fi~Lrki~aAr~IA~tia~S~NkvyL~~~~LlLn~q~~~~~  285 (290)
T KOG3090|consen  211 VEKAEQEKQSAIVRAQGEAKSAQLIGEAIKNNPAFITLRKIEAAREIAQTIASSANKVYLSSDDLLLNLQDMDLD  285 (290)
T ss_pred             hHHHHHhhhhhhhhhccchHHHHHHHHHHhCCccceeehhHHHHHHHHHHHhcCCCeEEecccceeeeehhhccc
Confidence            999999999999999999999999999999999999999999999999999999999999999999999988876

>cd03407 Band_7_4 A subgroup of the band 7 domain of flotillin (reggie) like proteins

Probab=100.00  E-value=2.3e-41  Score=286.40  Aligned_cols=219  Identities=17%  Similarity=0.263  Sum_probs=188.1

Q ss_pred             CCcCCCCccccCCcceEEcccccce-EEEEeeeeeEeeeecccccCceeEEEEEEEEEeeCCCCHHHHHHHhCccccccc
Q 026375            1 MKNLDLFACVYPEGTHLMVPWFERP-VIYDVRARPHLVESTSGSRDLQMVKIGLRVLTRPVADKLPTVYRALGENYNERV   79 (239)
Q Consensus         1 ~~rfG~~~~~~~pG~~~~~P~~~~v-~~v~~~~~~~~~~~~~~T~D~~~v~v~~~v~y~i~~~~~~~~~~~~~~~~~~~~   79 (239)
                      ++|||++.++++||+||++||++++ ..+|++.++++++.++.|+||+.|+++++|+|||.+..+..+|.+++  .+...
T Consensus         7 v~rfGk~~~~l~pGlhf~~P~i~~v~~~~~~r~~~~~~~~~~lTkD~~~V~vd~~v~yrI~d~~~~~~~~~~~--~~~~~   84 (262)
T cd03407           7 IERFGKFFKVAWPGCHFVIPLVETVAGRLSLRVQQLDVRVETKTKDNVFVTVVGQIQYRVSEENATDAFYKLG--NPEEQ   84 (262)
T ss_pred             EeecCcccccCCCCeEEEeccccceeeEEeeeEEEecCCCceEcCCCCEEEEEEEEEEEECCcHHHHHHHHcC--CHHHH
Confidence            5799999999999999999999998 48999999999888889999999999999999997766556666554  34568


Q ss_pred             cchHHHHHHHHHHhhcCHhHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEEeecccCCHHHHHHHHHHHHHHHHHHHH--
Q 026375           80 LPSIIHETLKAVVAQYNASQLITQRETVSREIRKILTERAANFNIALDDVSITSLTFGKEFTSAIEAKQVAAQEAERA--  157 (239)
Q Consensus        80 l~~~v~~~lr~~~~~~~~~ei~~~R~~i~~~i~~~l~~~l~~~Gi~i~~v~i~~i~~p~~~~~ai~~k~~A~q~ae~~--  157 (239)
                      |.+.+++++|+++|+|++++++++|++|++.+.+.+++.+++|||.|++|.|++++||+++.++|++++.|+++.++.  
T Consensus        85 l~~~~~s~lR~vig~~~l~eil~~R~~I~~~i~~~l~~~l~~~GI~V~~v~I~~i~~p~~v~~A~~~~~~A~~~~~a~~~  164 (262)
T cd03407          85 IQSYVFDVLRARIPKLTLDELFEQKDEIAKAVEEELREAMSRYGFEIVATLITDIDPDAEVKRAMNEINAAQRQRVAAVH  164 (262)
T ss_pred             HHHHHHHHHHHHhcCccHHHHHhhHHHHHHHHHHHHHHHHHhcCcEEEEEEEEecCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999999888888875533  


Q ss_pred             --H----HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhc-------------ChhhH----HHHHHHHHHHHHHHhcCC
Q 026375          158 --K----YIVEKAEQDKRSAIIRAQGEATSAQLIGQAIAN-------------NPAFI----TLRKIEAAREIAQTIAHS  214 (239)
Q Consensus       158 --~----~~~~~Aeaea~a~~~~Aegea~a~~~~a~a~~~-------------~p~~~----~~~~le~~~~~a~~~~~~  214 (239)
                        +    ..+..|++++++.+++|+|+|++..++++++..             .|+..    ..+|+|++++++.   ++
T Consensus       165 ~Aea~~~~~i~~A~~ea~a~~~~Aeg~a~a~~~~A~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~e~~~~~~~---~~  241 (262)
T cd03407         165 KAEAEKIKDIKAAEADAEAKRLQGVGAAEQRQAIADGLRESILSLADAVPGMTAKDVMDLLLVNQYFDTLKAYGR---SS  241 (262)
T ss_pred             HhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHHHHHHHHh---CC
Confidence              1    356788999999999999999988888777521             23332    3489999999875   55


Q ss_pred             CCEEEEcCCc
Q 026375          215 ANKVFLNSDD  224 (239)
Q Consensus       215 ~~~i~l~~~~  224 (239)
                      ++++++|++.
T Consensus       242 ~kviv~p~~~  251 (262)
T cd03407         242 STVVFRPHGP  251 (262)
T ss_pred             CCEEEecCCC
Confidence            6778898763

This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H

>PRK11029 FtsH protease regulator HflC; Provisional

Probab=100.00  E-value=3e-41  Score=291.83  Aligned_cols=228  Identities=20%  Similarity=0.330  Sum_probs=195.3

Q ss_pred             CCcCCCCcc-------ccCCcceEEcccccceEEEEeeeeeEeeeec-ccccCceeEEEEEEEEEeeCCCCHHHHHHHhC
Q 026375            1 MKNLDLFAC-------VYPEGTHLMVPWFERPVIYDVRARPHLVEST-SGSRDLQMVKIGLRVLTRPVADKLPTVYRALG   72 (239)
Q Consensus         1 ~~rfG~~~~-------~~~pG~~~~~P~~~~v~~v~~~~~~~~~~~~-~~T~D~~~v~v~~~v~y~i~~~~~~~~~~~~~   72 (239)
                      ++|||++.+       +++|||||++||++++..||++.+.++++.+ +.|+|+..|.||++|+|+|  .++..+|..++
T Consensus        31 V~rFGk~~~~~~~~~~~l~PGLhf~iPfid~V~~vdvR~q~~d~~~~~vlT~D~~~V~VD~~V~yrI--~Dp~~~~~~~~  108 (334)
T PRK11029         31 VLRFGKVLRDDDNKPLVYAPGLHFKIPFIETVKMLDARIQTMDNQADRFVTKEKKDLIVDSYIKWRI--SDFSRYYLATG  108 (334)
T ss_pred             EEECCceeccccccccccCCceEEEcCCceEEEEEeeEEEEeeCCCceEEcCCCCEEEEEEEEEEEE--CCHHHHHHHhc
Confidence            368999976       4899999999999999999999999998865 9999999999999999998  45666665554


Q ss_pred             -c--cccccccchHHHHHHHHHHhhcCHhHHHH-HHHHHHHHHHHHHHHH------------------------------
Q 026375           73 -E--NYNERVLPSIIHETLKAVVAQYNASQLIT-QRETVSREIRKILTER------------------------------  118 (239)
Q Consensus        73 -~--~~~~~~l~~~v~~~lr~~~~~~~~~ei~~-~R~~i~~~i~~~l~~~------------------------------  118 (239)
                       .  ......|.+.+++++|+++|+++++++++ +|++|..++++.+++.                              
T Consensus       109 ~~n~~~a~~~l~~~v~salR~viG~~tldei~~~~R~~i~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (334)
T PRK11029        109 GGDISQAEVLLKRKFSDRLRSEIGRLDVKDIVTDSRGRLTLDVRDALNSGSAGTEDEVATPAADDAIASAAERVEAETKG  188 (334)
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHcccCHHHHHHhhHHHHHHHHHHHHHHhhhcccccccccccccccccchhhccccccc
Confidence             2  23457789999999999999999999996 7999999999999964                              


Q ss_pred             ---------HhcCCeEEEEEEeecccCCHHHHHHHHHHHHHHHHHHHH----H---------------HHHHHHHHHHHH
Q 026375          119 ---------AANFNIALDDVSITSLTFGKEFTSAIEAKQVAAQEAERA----K---------------YIVEKAEQDKRS  170 (239)
Q Consensus       119 ---------l~~~Gi~i~~v~i~~i~~p~~~~~ai~~k~~A~q~ae~~----~---------------~~~~~Aeaea~a  170 (239)
                               +.+|||+|.+|.|+++.||+++.++|.+++.|++++..+    +               .....|++++++
T Consensus       189 ~~~~~~~~~~~~~GI~V~~V~i~~i~~P~~v~~ai~~~~~Aere~~a~~~~aege~~a~~~~a~A~~e~~~~~AeA~~~a  268 (334)
T PRK11029        189 KVPVINPNSMAALGIEVVDVRIKQINLPTEVSDAIYNRMRAEREAVARRHRSQGQEEAEKLRATADYEVTRTLAEAERQG  268 (334)
T ss_pred             ccccccccccccCCcEEEEEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence                     468999999999999999999999999888888764411    0               123458899999


Q ss_pred             HHHHHhhHHHHHHHHHHHhhcChhhHHH-HHHHHHHHHHHHhcCCCCEEEEcCCcccccccccc
Q 026375          171 AIIRAQGEATSAQLIGQAIANNPAFITL-RKIEAAREIAQTIAHSANKVFLNSDDLLLNLQEMK  233 (239)
Q Consensus       171 ~~~~Aegea~a~~~~a~a~~~~p~~~~~-~~le~~~~~a~~~~~~~~~i~l~~~~~~~~~~~~~  233 (239)
                      .+++|+|+|+++++++++|+++|+++.+ ++||+++++.+   ++++++|||+++.+|.+.+.|
T Consensus       269 ~i~~aegeA~a~~~~~~a~~~~p~~~~~~~~lea~~~~~~---~~~~~~vl~~~~~~~~~l~~~  329 (334)
T PRK11029        269 RIMRGEGDAEAAKLFADAFSQDPDFYAFIRSLRAYENSFS---GNQDVMVLSPDSDFFRYMKTP  329 (334)
T ss_pred             HHHHhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhc---CCCcEEEECCChHHHHHhhcc
Confidence            9999999999999999999999999997 99999999653   555789999999888877533

>TIGR01932 hflC HflC protein

Probab=100.00  E-value=3e-41  Score=292.24  Aligned_cols=225  Identities=17%  Similarity=0.304  Sum_probs=192.4

Q ss_pred             CCcCCCCcccc-------CCcceEEcccccceEEEEeeeeeEeeeec-ccccCceeEEEEEEEEEeeCCCCHHHHHHHhC
Q 026375            1 MKNLDLFACVY-------PEGTHLMVPWFERPVIYDVRARPHLVEST-SGSRDLQMVKIGLRVLTRPVADKLPTVYRALG   72 (239)
Q Consensus         1 ~~rfG~~~~~~-------~pG~~~~~P~~~~v~~v~~~~~~~~~~~~-~~T~D~~~v~v~~~v~y~i~~~~~~~~~~~~~   72 (239)
                      ++|||++.++.       +||+||++||++++..+|++.+.++.+.. +.|+|++++.|+++|+|||.  ++..+|..+|
T Consensus        31 v~~fGk~~~~~~~~~~v~~pGlhf~~P~i~~v~~vd~r~q~~~~~~~~vlTkD~~~V~Vd~~V~yrV~--d~~~~~~~~~  108 (317)
T TIGR01932        31 ITRFGKILKDNNHHVLVYEPGLHFKIPFIEHVKIFDAKIQTMDGRPDRIPTKEKKDIIIDTYIRWRIE--DFKKYYLSTG  108 (317)
T ss_pred             EEecCceeccccccccccCCCeEEEeccccEEEEeeeeEEEecCCcceeECCCCCEEEEEEEEEEEEC--CHHHHHHHhc
Confidence            36899987654       79999999999999999999999998764 99999999999999999984  5777887777


Q ss_pred             ---ccccccccchHHHHHHHHHHhhcCHhHHHH-HHHHH-----------------------------HHHHHHHHHHHH
Q 026375           73 ---ENYNERVLPSIIHETLKAVVAQYNASQLIT-QRETV-----------------------------SREIRKILTERA  119 (239)
Q Consensus        73 ---~~~~~~~l~~~v~~~lr~~~~~~~~~ei~~-~R~~i-----------------------------~~~i~~~l~~~l  119 (239)
                         .++.+..|.+.+++++|+++|+|+++|+++ +|++|                             +..+.+.+.+.+
T Consensus       109 ~~~~~~~~~~l~~~~~~~lR~vig~~tl~eil~~~r~~i~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~i~~~~~~~~  188 (317)
T TIGR01932       109 GGTISAAEVLIKRKIDDRLRSEIGVLGLKEIVRSSNDQLDTLVSKLALNRGGKINKIAMTITKGREILAREISQIANSQL  188 (317)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHccCcHHHHHhcchHHhhhhhchhhccccccccccccccchhhhhHHHHHHHHHHHHH
Confidence               335678899999999999999999999995 45555                             567888888899


Q ss_pred             hcCCeEEEEEEeecccCCHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHhhHHH
Q 026375          120 ANFNIALDDVSITSLTFGKEFTSAIEAKQVAAQEAERA-------------------KYIVEKAEQDKRSAIIRAQGEAT  180 (239)
Q Consensus       120 ~~~Gi~i~~v~i~~i~~p~~~~~ai~~k~~A~q~ae~~-------------------~~~~~~Aeaea~a~~~~Aegea~  180 (239)
                      .+|||+|++|.|++++||+++.++|.+++.|+++++.+                   +.....|+|++++.+++|+|||+
T Consensus       189 ~~~Gi~V~~V~I~~i~~p~~v~~Ai~~~~~aere~~a~~~r~ege~~a~~i~a~A~~e~~~~~aeA~a~a~~~~Aegea~  268 (317)
T TIGR01932       189 KDIGIEVVDVRIKKINYSDELSESIYNRMRSEREQIARMHRSQGEEKAEEILGKAEYEVRKILSEAYRTARIIKGEGDAE  268 (317)
T ss_pred             hcCCcEEEEEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence            99999999999999999999999998888877653111                   11345678888899999999999


Q ss_pred             HHHHHHHHhhcChhhHHH-HHHHHHHHHHHHhcCCCCEEEEcCCccccccc
Q 026375          181 SAQLIGQAIANNPAFITL-RKIEAAREIAQTIAHSANKVFLNSDDLLLNLQ  230 (239)
Q Consensus       181 a~~~~a~a~~~~p~~~~~-~~le~~~~~a~~~~~~~~~i~l~~~~~~~~~~  230 (239)
                      ++++++++|+++|+++++ ++||+++++.+   ++++++++|+|+.||.+.
T Consensus       269 a~~~~~~a~~~~p~~~~~~~~le~~~~~~~---~~~~~~vl~~~~~~~~~~  316 (317)
T TIGR01932       269 AAKIYSDAYGKDPEFYSFWRSLEAYEKSFK---DNQDEKVLSTDSEFFQYM  316 (317)
T ss_pred             HHHHHHHHHccCHHHHHHHHHHHHHHHHhC---CCCCEEEECCCcHHHHhh
Confidence            999999999999999986 99999999653   566689999999998764

HflK and HflC are paralogs encoded by tandem genes in Proteobacteria, spirochetes, and some other bacterial lineages. The HflKC complex is anchored in the membrane and exposed to the periplasm. The complex is not active as a protease, but rather binds to and appears to modulate the ATP-dependent protease FtsH. The overall function of HflKC is not fully described.//Regulation of FtsH protease appears to be negative (PubMed:8947034, PubMed:96367)

>TIGR01933 hflK HflK protein

Probab=100.00  E-value=1.4e-39  Score=275.52  Aligned_cols=224  Identities=17%  Similarity=0.213  Sum_probs=189.5

Q ss_pred             CCcCCCCccccCCcceEEcccccceEEEEeeeeeEeeee-cccccCceeEEEEEEEEEeeCCCCHHHHHHHhCccccccc
Q 026375            1 MKNLDLFACVYPEGTHLMVPWFERPVIYDVRARPHLVES-TSGSRDLQMVKIGLRVLTRPVADKLPTVYRALGENYNERV   79 (239)
Q Consensus         1 ~~rfG~~~~~~~pG~~~~~P~~~~v~~v~~~~~~~~~~~-~~~T~D~~~v~v~~~v~y~i~~~~~~~~~~~~~~~~~~~~   79 (239)
                      ++|||++.++++||+||++||+++++.+|++.+....+. .+.|+||..|.+++++.|||.  ++..++  |+.+.++..
T Consensus        12 v~~fGk~~~~l~pGl~~~~P~i~~v~~~~~~~~~~~~~~~~v~T~D~~~v~vd~~v~yrI~--d~~~~~--~~~~~~~~~   87 (261)
T TIGR01933        12 VLRFGKYHRTVDPGLNWKPPFIEEVYPVNVTAVRNLRKQGLMLTGDENIVNVEMNVQYRIT--DPYKYL--FSVENPEDS   87 (261)
T ss_pred             EEEcCccccccCCcceEECCCceEEEEeeeEEEEecCCcCeEEeCCCCEEEEEEEEEEEEC--CHHHHH--HhCCCHHHH
Confidence            468999999999999999999999999999764422222 378999999999999999985  333333  355677788


Q ss_pred             cchHHHHHHHHHHhhcCHhHHHH-HHHHHHHHHHHHHHHHHhcC--CeEEEEEEeecccCCHHHHHHHHHHHHHHHHHHH
Q 026375           80 LPSIIHETLKAVVAQYNASQLIT-QRETVSREIRKILTERAANF--NIALDDVSITSLTFGKEFTSAIEAKQVAAQEAER  156 (239)
Q Consensus        80 l~~~v~~~lr~~~~~~~~~ei~~-~R~~i~~~i~~~l~~~l~~~--Gi~i~~v~i~~i~~p~~~~~ai~~k~~A~q~ae~  156 (239)
                      |.+.+++++|+++|+++++++++ +|++|++.+.+.+++.++.|  ||+|++|.|+++.||+++.++|++++.|+|++++
T Consensus        88 l~~~~~s~lR~vig~~~l~eil~~~R~~i~~~i~~~l~~~~~~~~~GI~V~~v~I~~i~~p~~v~~a~~~~~~a~q~~~~  167 (261)
T TIGR01933        88 LRQATDSALRGVIGDSTMDDILTEGRSQIREDTKERLNEIIDNYDLGITVTDVNFQSARPPEEVKEAFDDVIIAREDEER  167 (261)
T ss_pred             HHHHHHHHHHHHHhhCcHHHHHHhCHHHHHHHHHHHHHHHHhhhcCCcEEEEEEEEecCCCHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999997 89999999999999999965  9999999999999999999999988888776433


Q ss_pred             HH-------------------HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhcChhhHHH-HHHHHHHHHHHHhcCCCC
Q 026375          157 AK-------------------YIVEKAEQDKRSAIIRAQGEATSAQLIGQAIANNPAFITL-RKIEAAREIAQTIAHSAN  216 (239)
Q Consensus       157 ~~-------------------~~~~~Aeaea~a~~~~Aegea~a~~~~a~a~~~~p~~~~~-~~le~~~~~a~~~~~~~~  216 (239)
                      ..                   ..+..|++++++.+++|+|+|++..+++++|+.+|+++.+ +++|+++++.   ++.++
T Consensus       168 ~~~~ae~~~~~~~~~a~~~a~~~~~~Aea~~~~~~~~a~g~a~~~~~~~~ay~~~p~~~~~~~~le~~~~~~---~~~~~  244 (261)
T TIGR01933       168 YINEAEAYANEVVPKARGDAQRIIEEARGYKERRINRAKGDVARFTKLLAEYKKAPDVTRERLYLETMEKVL---SNTRK  244 (261)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhChHHHHHHHHHHHHHHHH---ccCCe
Confidence            21                   1357788889999999999999999999999999999987 9999999865   24555


Q ss_pred             EEEEcCCcccccccc
Q 026375          217 KVFLNSDDLLLNLQE  231 (239)
Q Consensus       217 ~i~l~~~~~~~~~~~  231 (239)
                      ++++++++.+|.+-+
T Consensus       245 ~~~~~~~~~~~~~~~  259 (261)
T TIGR01933       245 VLLDDKKGNNLLYLP  259 (261)
T ss_pred             EEEECCCCCeeeeec
Confidence            678888887776544

HflK and HflC are paralogs encoded by tandem genes in Proteobacteria, spirochetes, and some other bacterial lineages. The HflKC complex is anchored in the membrane and exposed to the periplasm. The complex is not active as a protease, but rather binds to and appears to modulate the ATP-dependent protease FtsH. The overall function of HflKC is not fully described.//Regulation of FtsH by HflKC appears to be negative (PubMed:8947034,PubMed:96367)

>cd03405 Band_7_HflC Band_7_HflC: The band 7 domain of flotillin (reggie) like proteins

Probab=100.00  E-value=1.4e-39  Score=272.59  Aligned_cols=204  Identities=23%  Similarity=0.329  Sum_probs=180.2

Q ss_pred             CCcCCCCcc-ccCCcceEEcccccceEEEEeeeeeEeeeec-ccccCceeEEEEEEEEEeeCCCCHHHHHHHhCcc--cc
Q 026375            1 MKNLDLFAC-VYPEGTHLMVPWFERPVIYDVRARPHLVEST-SGSRDLQMVKIGLRVLTRPVADKLPTVYRALGEN--YN   76 (239)
Q Consensus         1 ~~rfG~~~~-~~~pG~~~~~P~~~~v~~v~~~~~~~~~~~~-~~T~D~~~v~v~~~v~y~i~~~~~~~~~~~~~~~--~~   76 (239)
                      ++|||++.+ +++||+||++||+++++.||++.+.++++.. +.|+|++++++++++.|||.  ++..+|.+++..  ..
T Consensus        12 v~~~Gk~~~~~~~pG~~~~~P~i~~v~~v~~r~~~~~~~~~~v~T~D~~~v~v~~~v~yrI~--d~~~~~~~~~~~~~~~   89 (242)
T cd03405          12 VLRFGEVVRVVTEPGLHFKLPFIQQVKKFDKRILTLDSDPQRVLTKDKKRLIVDAYAKWRIT--DPLRFYQAVGGEERAA   89 (242)
T ss_pred             EEEcCccccccCCCCeeEEcCCcceEEEEcCEEEeccCCcceEEccCCcEEEEEEEEEEEEc--CHHHHHHHhcChHHHH
Confidence            368999976 6899999999999999999999998887654 89999999999999999984  466788877732  23


Q ss_pred             ccccchHHHHHHHHHHhhcCHhHHHHH-HHHHHHHHHHHHHHHHhcCCeEEEEEEeecccCCHHHHHHHHHHHHHHHHHH
Q 026375           77 ERVLPSIIHETLKAVVAQYNASQLITQ-RETVSREIRKILTERAANFNIALDDVSITSLTFGKEFTSAIEAKQVAAQEAE  155 (239)
Q Consensus        77 ~~~l~~~v~~~lr~~~~~~~~~ei~~~-R~~i~~~i~~~l~~~l~~~Gi~i~~v~i~~i~~p~~~~~ai~~k~~A~q~ae  155 (239)
                      +..|.+.+++++|+++|+|+++|++++ |++|++.+.+.|++.+.+|||+|.+|.|++|.||+++.++|+.++.|+++..
T Consensus        90 ~~~i~~~~~~~lr~vi~~~~~~el~~~~R~~i~~~i~~~l~~~l~~~Gi~i~~v~i~~i~~p~~i~~ai~~~~~ae~~~~  169 (242)
T cd03405          90 ETRLDQIVNSALRAEFGKRTLIELVSGERGELMEEIRRAVAEEAKELGIEVVDVRIKRIDLPEEVSESVYRRMRAERERI  169 (242)
T ss_pred             HHHHHHHHHHHHHHHHccCCHHHHHHhHHHHHHHHHHHHHHHHHHccCcEEEEEEEEeccCCHHHHHHHHHHHHHHHHHH
Confidence            478999999999999999999999976 9999999999999999999999999999999999999999987777766432


Q ss_pred             HH-------------------HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhcChhhHHH-HHHHHHHH
Q 026375          156 RA-------------------KYIVEKAEQDKRSAIIRAQGEATSAQLIGQAIANNPAFITL-RKIEAARE  206 (239)
Q Consensus       156 ~~-------------------~~~~~~Aeaea~a~~~~Aegea~a~~~~a~a~~~~p~~~~~-~~le~~~~  206 (239)
                      .+                   +..+..|++++++.+++|+|+|+++++++++++++|+++.+ ++||+++.
T Consensus       170 a~~~~ae~~~~a~~~~aea~~~~~~~~Aea~a~a~~~~a~gea~a~~~~~~a~~~~p~~~~~~~~l~~~~~  240 (242)
T cd03405         170 AAEFRAEGEEEAERIRADADRERTVILAEAYREAQEIRGEGDAEAARIYAEAYGKDPEFYAFYRSLEAYRN  240 (242)
T ss_pred             HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence            11                   12467899999999999999999999999999999999997 99999975

This group includes proteins similar to prokaryotic HlfC (High frequency of lysogenization C). Although many members of the band 7 family are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflC is an integral membrane protein which may localize to the plasma membrane. HflC associates with another band 7 family member (HflK) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during la

>cd03401 Band_7_prohibitin Band_7_prohibitin

Probab=100.00  E-value=1.1e-39  Score=265.17  Aligned_cols=180  Identities=66%  Similarity=0.958  Sum_probs=171.2

Q ss_pred             CcCCCCcc--ccCCcceEEcccccceEEEEeeeeeEeeeecccccCceeEEEEEEEEEeeCCCCHHHHHHHhCccccccc
Q 026375            2 KNLDLFAC--VYPEGTHLMVPWFERPVIYDVRARPHLVESTSGSRDLQMVKIGLRVLTRPVADKLPTVYRALGENYNERV   79 (239)
Q Consensus         2 ~rfG~~~~--~~~pG~~~~~P~~~~v~~v~~~~~~~~~~~~~~T~D~~~v~v~~~v~y~i~~~~~~~~~~~~~~~~~~~~   79 (239)
                      .|||+...  +++||+||++||+++++.+|++.+++++...+.|+|++.|++++++.|++++++++.+|..+|.++.+..
T Consensus        14 ~~~g~~~~~~~~~pG~h~~~P~~~~v~~~~~r~~~~~~~~~~~t~d~~~V~v~~~v~y~v~~~~~~~~~~~~~~~~~~~~   93 (196)
T cd03401          14 FNRGGGVKDLVYGEGLHFRIPWFQKPIIFDVRARPRNIESTTGSKDLQMVNITLRVLFRPDASQLPRIYQNLGEDYDERV   93 (196)
T ss_pred             EEecCccccCccCCceEEEccccceeEEEEeeeeEEEEeecccCCCCeEEEEEEEEEEEeCHHHHHHHHHHhCcchHhhh
Confidence            47887643  8999999999999999999999999988877889999999999999999988888899999998777888


Q ss_pred             cchHHHHHHHHHHhhcCHhHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEEeecccCCHHHHHHHHHHHHHHHHHHHHHH
Q 026375           80 LPSIIHETLKAVVAQYNASQLITQRETVSREIRKILTERAANFNIALDDVSITSLTFGKEFTSAIEAKQVAAQEAERAKY  159 (239)
Q Consensus        80 l~~~v~~~lr~~~~~~~~~ei~~~R~~i~~~i~~~l~~~l~~~Gi~i~~v~i~~i~~p~~~~~ai~~k~~A~q~ae~~~~  159 (239)
                      |.+.+++++|+++|+|+++|++++|++|++.+.+.+++.+.+|||.|++|.|++|++|+++.++|+++++|+|+++++++
T Consensus        94 i~~~v~~~lR~vi~~~~~~ei~~~R~~i~~~i~~~l~~~l~~~Gi~i~~v~i~~i~~p~~~~~ai~~k~~a~q~~~~a~~  173 (196)
T cd03401          94 LPSIINEVLKAVVAQFTAEELITQREEVSALIREALTERAKDFGIILDDVSITHLTFSKEFTKAVEAKQVAQQEAERAKF  173 (196)
T ss_pred             hcHHHHHHHHHHHccCCHHHHHhhHHHHHHHHHHHHHHHHHhCCeEEEEEEEEeccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhHHHH
Q 026375          160 IVEKAEQDKRSAIIRAQGEATS  181 (239)
Q Consensus       160 ~~~~Aeaea~a~~~~Aegea~a  181 (239)
                      ++..|+++|++++++|+|||+|
T Consensus       174 ~~~~a~~ea~~~~~~A~gea~a  195 (196)
T cd03401         174 VVEKAEQEKQAAVIRAEGEAEA  195 (196)
T ss_pred             HHHHHHHHHHHHHHHhhhhhhc
Confidence            9999999999999999999987

A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup group includes proteins similar to prohibitin (a lipid raft-associated integral membrane protein). Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. These microdomains in addition to being stable scaffolds may also be also dynamic units with their own regulatory functions. Prohibitin is a mitochondrial inner-membrane protein which may act as a chaperone for the stabilization of mitochondrial proteins. Human prohibitin forms a heter-oligomeric complex with Bap-37 (prohibitin 2, a band 7 domain carrying homologue). This complex may protect non-assembled membrane proteins against proteolysis by the m-AAA protease. Prohibitin and Bap-37 yeast homologues have been implicated in yeast longevity and, in the maintenance of mitochondrial morphology.

>PRK10930 FtsH protease regulator HflK; Provisional

Probab=100.00  E-value=6.1e-37  Score=271.72  Aligned_cols=222  Identities=19%  Similarity=0.299  Sum_probs=183.3

Q ss_pred             CCcCCCCccccCCcceEEcccccceEEEEeeeeeEeee-ecccccCceeEEEEEEEEEeeCCCCHHHHHHHhCccccccc
Q 026375            1 MKNLDLFACVYPEGTHLMVPWFERPVIYDVRARPHLVE-STSGSRDLQMVKIGLRVLTRPVADKLPTVYRALGENYNERV   79 (239)
Q Consensus         1 ~~rfG~~~~~~~pG~~~~~P~~~~v~~v~~~~~~~~~~-~~~~T~D~~~v~v~~~v~y~i~~~~~~~~~~~~~~~~~~~~   79 (239)
                      ++|||++.++++||+||++||+++|..+|++.+..... ..++|+|+..|.|+++|+|||.  ++..++.  ....++..
T Consensus       108 V~rFGk~~~~l~PGLhfk~PfId~V~~vdv~~~~~~~~~~~mLT~D~n~V~Vd~~VqYrI~--Dp~~~lf--~v~~~~~~  183 (419)
T PRK10930        108 VTRFGKFSHLVEPGLNWKPTFIDEVKPVNVEAVRELAASGVMLTSDENVVRVEMNVQYRVT--DPEKYLF--SVTSPDDS  183 (419)
T ss_pred             EEECCcCcceeCCceEEecCceEEEEEEEeEEEEEccCcceeECCCCCEEEEEEEEEEEEC--CHHHHHH--hccCHHHH
Confidence            47999999999999999999999999999887643322 3489999999999999999984  4444443  45677888


Q ss_pred             cchHHHHHHHHHHhhcCHhHHHH-HHHHHHHHHHHHHHHHHhcC--CeEEEEEEeecccCCHHHHHHHHHHHHHHHHHHH
Q 026375           80 LPSIIHETLKAVVAQYNASQLIT-QRETVSREIRKILTERAANF--NIALDDVSITSLTFGKEFTSAIEAKQVAAQEAER  156 (239)
Q Consensus        80 l~~~v~~~lr~~~~~~~~~ei~~-~R~~i~~~i~~~l~~~l~~~--Gi~i~~v~i~~i~~p~~~~~ai~~k~~A~q~ae~  156 (239)
                      |.+.+++++|+++|+++++++++ +|++|..++.+.+++.+++|  ||+|.+|.|+++.||+++.+++++.+.|+++.++
T Consensus       184 L~~~~~SAlR~vIG~~tldevLt~~R~~I~~~i~~~l~e~l~~y~~GI~V~~V~I~di~pP~eV~~Af~~v~~Are~~~~  263 (419)
T PRK10930        184 LRQATDSALRGVIGKYTMDRILTEGRTVIRSDTQRELEETIRPYDMGITLLDVNFQAARPPEEVKAAFDDAIAARENEQQ  263 (419)
T ss_pred             HHHHHHHHHHHHHccCCHHHHhhccHHHHHHHHHHHHHHHHhhcCCCeEEEEEEEeecCCCHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999996 69999999999999999987  9999999999999999999999876666654221


Q ss_pred             H-------------------HHHHHHHHHHHHHHHHHHhhHHHH-HHHHHHHhhcChhhHHH-HHHHHHHHHHHHhcCCC
Q 026375          157 A-------------------KYIVEKAEQDKRSAIIRAQGEATS-AQLIGQAIANNPAFITL-RKIEAAREIAQTIAHSA  215 (239)
Q Consensus       157 ~-------------------~~~~~~Aeaea~a~~~~Aegea~a-~~~~a~a~~~~p~~~~~-~~le~~~~~a~~~~~~~  215 (239)
                      .                   +..+..|+|++++.+++|+|||++ .+++ .+|.++|++.+. .|||+++++   | ++.
T Consensus       264 ~i~eAeayan~iip~A~gea~~ii~~AeAyr~~~i~~AeGda~rF~~i~-~~Y~kaP~vtr~RlYletme~v---l-~~~  338 (419)
T PRK10930        264 YIREAEAYTNEVQPRANGQAQRILEEARAYKAQTILEAQGEVARFAKLL-PEYKAAPEITRERLYIETMEKV---L-GHT  338 (419)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH-HHHhhCHHHHHHHHHHHHHHHH---H-ccC
Confidence            1                   123566899999999999999977 5555 589999999986 999999995   4 456


Q ss_pred             CEEEEcCCc---ccccccc
Q 026375          216 NKVFLNSDD---LLLNLQE  231 (239)
Q Consensus       216 ~~i~l~~~~---~~~~~~~  231 (239)
                      ++++++.++   .+|+|++
T Consensus       339 ~kvivd~~~~~~~~lpl~~  357 (419)
T PRK10930        339 RKVLVNDKGGNLMVLPLDQ  357 (419)
T ss_pred             CEEEEeCCCCeeEEeechH
Confidence            778887652   3555554

>cd03403 Band_7_stomatin_like Band_7_stomatin_like: A subgroup of the band 7 domain of flotillin (reggie) like proteins similar to stomatin and podicin (two lipid raft-associated integral membrane proteins)

Probab=100.00  E-value=2.3e-36  Score=248.91  Aligned_cols=201  Identities=25%  Similarity=0.409  Sum_probs=173.9

Q ss_pred             CcCCCCccccCCcceEEcccccce-EEEEeeeeeEeeeec-ccccCceeEEEEEEEEEeeCCCCHHHHHHHhCccccccc
Q 026375            2 KNLDLFACVYPEGTHLMVPWFERP-VIYDVRARPHLVEST-SGSRDLQMVKIGLRVLTRPVADKLPTVYRALGENYNERV   79 (239)
Q Consensus         2 ~rfG~~~~~~~pG~~~~~P~~~~v-~~v~~~~~~~~~~~~-~~T~D~~~v~v~~~v~y~i~~~~~~~~~~~~~~~~~~~~   79 (239)
                      .|||++.++++||+||++||++++ +.||++.++++++.. +.|+|++++.+++++.|||.  ++..++.  ..+.++..
T Consensus        10 ~~~G~~~~~~~pG~~f~~P~~~~v~~~v~~r~~~~~~~~~~v~T~D~~~v~v~~~v~yrI~--d~~~~~~--~~~~~~~~   85 (215)
T cd03403          10 ERLGKYHRTLGPGLHFIIPFIDRIAYKVDLREQVLDVPPQEVITKDNVTVRVDAVLYYRVV--DPVKAVY--GVEDYRYA   85 (215)
T ss_pred             EEcCcCccccCCcEEEEeccceEEEEEEeeEEEEEccCCceeEcCCCCEEEEEEEEEEEEe--cHHHHHh--cCCCHHHH
Confidence            589999999999999999999999 999999999999765 89999999999999999983  3334443  33556678


Q ss_pred             cchHHHHHHHHHHhhcCHhHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEEeecccCCHHHHHHHHHHHHHHHHHHHHHH
Q 026375           80 LPSIIHETLKAVVAQYNASQLITQRETVSREIRKILTERAANFNIALDDVSITSLTFGKEFTSAIEAKQVAAQEAERAKY  159 (239)
Q Consensus        80 l~~~v~~~lr~~~~~~~~~ei~~~R~~i~~~i~~~l~~~l~~~Gi~i~~v~i~~i~~p~~~~~ai~~k~~A~q~ae~~~~  159 (239)
                      |.+.+++++|+++++++++|++++|++|++.+.+.|++.+.+|||+|++|.|+++++|+++.++|++++.          
T Consensus        86 l~~~~~~~lr~~i~~~~~~el~~~R~~i~~~i~~~l~~~l~~~Gi~v~~v~i~~i~~p~~~~~ai~~~~~----------  155 (215)
T cd03403          86 ISQLAQTTLRSVIGKMELDELLSEREEINAELVEILDEATDPWGVKVERVEIKDIILPQEIQEAMAKQAE----------  155 (215)
T ss_pred             HHHHHHHHHHHHHccccHHHHHhhHHHHHHHHHHHHHHHHhccCeEEEEEEEeeecCCHHHHHHHHHHHH----------
Confidence            9999999999999999999999999999999999999999999999999999999999999999986543          


Q ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHHHHhh---cChhhHHHHHHHHHHHHHHHhcCCCCEEEEcCC
Q 026375          160 IVEKAEQDKRSAIIRAQGEATSAQLIGQAIA---NNPAFITLRKIEAAREIAQTIAHSANKVFLNSD  223 (239)
Q Consensus       160 ~~~~Aeaea~a~~~~Aegea~a~~~~a~a~~---~~p~~~~~~~le~~~~~a~~~~~~~~~i~l~~~  223 (239)
                          |+.++++.+++|+|++++.+++++|.+   .+|.++.++++|+++.+++   ..+.+++++++
T Consensus       156 ----A~~~~~a~i~~A~ge~~a~~~~aea~~~~~~~~~~~~~~~~e~~~~~~~---~~~~~~~~~~~  215 (215)
T cd03403         156 ----AEREKRAKIIEAEGERQAAILLAEAAKQAAINPAALQLRELETLEEIAK---EAASTVVFPAP  215 (215)
T ss_pred             ----HHHHHHHHHHHhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHh---ccCCeEEeeCC
Confidence                445566778888888888888888864   2689999999999999997   45566666653

Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Stomatin is widely expressed and, highly expressed in red blood cells. It localizes predominantly to the plasma membrane and to intracellular vesicles of the endocytic pathway, where it is present in higher order homo-oligomeric complexes (of between 9 and 12 monomers). Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and, is implicated in trafficking of Glut1 glucose transporters. Prohibitin is a mitochondrial inner-membrane protein hypothesized to act as a chaperone for the stabilization of mitochondrial proteins. Podicin local

>KOG3083 consensus Prohibitin [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=8.2e-37  Score=241.84  Aligned_cols=225  Identities=53%  Similarity=0.857  Sum_probs=212.7

Q ss_pred             CCCccccCCcceEEcccccceEEEEeeeeeEeeeecccccCceeEEEEEEEEEeeCCCCHHHHHHHhCccccccccchHH
Q 026375            5 DLFACVYPEGTHLMVPWFERPVIYDVRARPHLVESTSGSRDLQMVKIGLRVLTRPVADKLPTVYRALGENYNERVLPSII   84 (239)
Q Consensus         5 G~~~~~~~pG~~~~~P~~~~v~~v~~~~~~~~~~~~~~T~D~~~v~v~~~v~y~i~~~~~~~~~~~~~~~~~~~~l~~~v   84 (239)
                      |....+++.|.||.+||.++.+.||.+.++..++....|||-+.|++...+.|+...+.+|.+|.++|.+|.+..|.++.
T Consensus        44 gv~~~vvgegthflipw~qk~~i~d~rs~p~~v~~itGskdLQ~VniTlril~rp~~sqLP~If~~~G~dyDErVLpsI~  123 (271)
T KOG3083|consen   44 GVQDQVVGEGTHFLIPWVQKPIIFDCRSRPRNVPVITGSKDLQNVNITLRILFRPVVSQLPCIFTSIGEDYDERVLPSIT  123 (271)
T ss_pred             chhhhcccCCceeeeeeccCcEEEeccCCCcccccccCchhhhcccceEEEEecccccccchHHHhhcccccccccccch
Confidence            33456889999999999999999999999999988889999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhcCHhHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEEeecccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026375           85 HETLKAVVAQYNASQLITQRETVSREIRKILTERAANFNIALDDVSITSLTFGKEFTSAIEAKQVAAQEAERAKYIVEKA  164 (239)
Q Consensus        85 ~~~lr~~~~~~~~~ei~~~R~~i~~~i~~~l~~~l~~~Gi~i~~v~i~~i~~p~~~~~ai~~k~~A~q~ae~~~~~~~~A  164 (239)
                      ...+++++++++..|+++.|+.+++.+.+.|.++...+|+.+++|.|+++.+..++.+++++||+|+||+||+++.++.|
T Consensus       124 ~eiLKsVVa~FdA~eliTqRe~vS~~v~~~lt~rA~~Fgl~LddvsiThltfGkEFt~AvE~KQVAQQEAErarFvVeKA  203 (271)
T KOG3083|consen  124 TEILKSVVARFDAGELITQRELVSRQVSNDLTERAATFGLILDDVSITHLTFGKEFTEAVEAKQVAQQEAERARFVVEKA  203 (271)
T ss_pred             HHHHHHHHHhccccchhhhhHHHHHHHHHHHHHHHHhhCeeechhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHhhc-ChhhHHHHHHHHHHHHHHHhcCCCCEEEEcCC-cccccc
Q 026375          165 EQDKRSAIIRAQGEATSAQLIGQAIAN-NPAFITLRKIEAAREIAQTIAHSANKVFLNSD-DLLLNL  229 (239)
Q Consensus       165 eaea~a~~~~Aegea~a~~~~a~a~~~-~p~~~~~~~le~~~~~a~~~~~~~~~i~l~~~-~~~~~~  229 (239)
                      ++++.+.+|.||||++|.+++++++.. ...+++++.+|+-++++..|+++.|+.|+|++ +.++++
T Consensus       204 eQqk~aavIsAEGds~aA~li~~sla~aG~gLielrrlEAa~dia~~Ls~s~nv~YLp~g~s~l~~l  270 (271)
T KOG3083|consen  204 EQQKKAAVISAEGDSKAAELIANSLATAGDGLIELRRLEAAEDIAYQLSRSRNVTYLPAGQSMLLQL  270 (271)
T ss_pred             hhhhhhheeecccchHHHHHHHHHHhhcCCceeeehhhhhHHHHHHHHhcCCCceeccCCcceeccC
Confidence            999999999999999999999999864 55689999999999999999999999999986 456554

>cd03404 Band_7_HflK Band_7_HflK: The band 7 domain of flotillin (reggie) like proteins

Probab=100.00  E-value=2.5e-34  Score=244.14  Aligned_cols=203  Identities=21%  Similarity=0.235  Sum_probs=165.4

Q ss_pred             CCcCCCCccccCCcceEEcccccceEEE-Eeeee----------eEe-e--eecccccCceeEEEEEEEEEeeCCCCHHH
Q 026375            1 MKNLDLFACVYPEGTHLMVPWFERPVIY-DVRAR----------PHL-V--ESTSGSRDLQMVKIGLRVLTRPVADKLPT   66 (239)
Q Consensus         1 ~~rfG~~~~~~~pG~~~~~P~~~~v~~v-~~~~~----------~~~-~--~~~~~T~D~~~v~v~~~v~y~i~~~~~~~   66 (239)
                      ++|||++.++++||+||++||++++..+ +++.+          ... .  +..+.|+||+.|.+++++.|||.+  +..
T Consensus        26 V~~fGk~~~~~~pGlh~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~T~D~~~v~vd~~v~yrI~d--~~~  103 (266)
T cd03404          26 VLRFGKYSRTVEPGLHWKLPYPIEVVEVVPVFQLRSVGIPVRVGSVRSVPGESLMLTGDENIVDVEFAVQYRISD--PYD  103 (266)
T ss_pred             eEEcCccccccCCceeEecCCCcEEEEEecceeEEeeccccccccccCCCcccceEeCCCCEEEEEEEEEEEECC--HHH
Confidence            4689999999999999999999887544 33211          111 1  124789999999999999999853  333


Q ss_pred             HHHHhCccccccccchHHHHHHHHHHhhcCHhHHHHH-HHHHHHHHHHHHHHHHhcC--CeEEEEEEeecccCCHHHHHH
Q 026375           67 VYRALGENYNERVLPSIIHETLKAVVAQYNASQLITQ-RETVSREIRKILTERAANF--NIALDDVSITSLTFGKEFTSA  143 (239)
Q Consensus        67 ~~~~~~~~~~~~~l~~~v~~~lr~~~~~~~~~ei~~~-R~~i~~~i~~~l~~~l~~~--Gi~i~~v~i~~i~~p~~~~~a  143 (239)
                      ++.  +...++..|.+.+++++|+++|+|+++|++++ |++|.+.+.+.+++.+..|  ||+|.+|.|+++.||+++.++
T Consensus       104 ~~~--~~~~~~~~l~~~~~~~lr~~i~~~~~~eil~~~R~~i~~~i~~~l~~~~~~~~~Gi~v~~v~i~~i~~p~~i~~a  181 (266)
T cd03404         104 YLF--NVRDPEGTLRQAAESAMREVVGRSTLDDVLTEGREEIAQDVRELLQAILDAYKAGIEIVGVNLQDADPPEEVQDA  181 (266)
T ss_pred             HHh--hCCCHHHHHHHHHHHHHHHHHhhCcHHHHHHhCHHHHHHHHHHHHHHHhhccCCCeEEEEEEEEeCCCCHHHHHH
Confidence            332  34556778999999999999999999999986 9999999999999999976  999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhcChhhHH-HHHHHH
Q 026375          144 IEAKQVAAQEAERAK-------------------YIVEKAEQDKRSAIIRAQGEATSAQLIGQAIANNPAFIT-LRKIEA  203 (239)
Q Consensus       144 i~~k~~A~q~ae~~~-------------------~~~~~Aeaea~a~~~~Aegea~a~~~~a~a~~~~p~~~~-~~~le~  203 (239)
                      |+++..|+|++++++                   .....|++++++.+++|+|++++.++++++|+++|.++. ..|+++
T Consensus       182 ~~~~~~A~q~~~~~~~eae~~a~~~~~~A~~ea~~~~~~A~a~~~~~~~~ae~~a~~~~~~~~a~~~~~~~~~~~~~~~~  261 (266)
T cd03404         182 FDDVNKARQDRERLINEAEAYANEVVPKARGEAARIIQEAEAYKEEVIAEAQGEAARFESLLAEYKKAPDVTRERLYLET  261 (266)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHH
Confidence            998888887644332                   134567777778888888888888999999999999765 499999


Q ss_pred             HHHH
Q 026375          204 AREI  207 (239)
Q Consensus       204 ~~~~  207 (239)
                      +.++
T Consensus       262 ~~~~  265 (266)
T cd03404         262 MEEV  265 (266)
T ss_pred             HHHh
Confidence            8863

This group includes proteins similar to prokaryotic HlfK (High frequency of lysogenization K). Although many members of the band 7 family are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflK is an integral membrane protein which may localize to the plasma membrane. HflK associates with another band 7 family member (HflC) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during la

>cd03406 Band_7_3 A subgroup of the band 7 domain of flotillin (reggie) like proteins

Probab=100.00  E-value=5.7e-34  Score=241.01  Aligned_cols=183  Identities=15%  Similarity=0.262  Sum_probs=159.4

Q ss_pred             CCcCCCC-ccccCCcceEEcccccceEEEEeeeeeEeeee-cccccCceeEEEE-EEEEEeeCCCCHHHHHHHhCccccc
Q 026375            1 MKNLDLF-ACVYPEGTHLMVPWFERPVIYDVRARPHLVES-TSGSRDLQMVKIG-LRVLTRPVADKLPTVYRALGENYNE   77 (239)
Q Consensus         1 ~~rfG~~-~~~~~pG~~~~~P~~~~v~~v~~~~~~~~~~~-~~~T~D~~~v~v~-~~v~y~i~~~~~~~~~~~~~~~~~~   77 (239)
                      ++|||++ ..+++|||||++||++++..++++.++.+.+. .+.|+||+.|++| +.+.|++++..+...+.+|+.++..
T Consensus        16 V~RfGkv~~~~l~PGLHfkiPfId~V~~v~vrlq~~~~~~~~v~TkDg~~ItvD~i~v~~ivdp~~~~~~~~~y~~~~~~   95 (280)
T cd03406          16 YYRGGALLTSTSGPGFHLMLPFITTYKSVQVTLQTDEVKNVPCGTSGGVMIYFDRIEVVNFLIPDSVYDIVKNYTADYDK   95 (280)
T ss_pred             EEECCcccccccCCceEEecCCceEEEEEEeEEEEeccCCcccccCCCcEEEEEEEEEEEecCHHHHHHHHHHHhHhhHH
Confidence            4699998 56889999999999999999999999888753 4889999999999 5688888888777777777878889


Q ss_pred             cccchHHHHHHHHHHhhcCHhHHHH-HHHHHHHHHHHHHHHHHhcC--CeEEEEEEeecccCCHHHHHHHHHHHHHHHHH
Q 026375           78 RVLPSIIHETLKAVVAQYNASQLIT-QRETVSREIRKILTERAANF--NIALDDVSITSLTFGKEFTSAIEAKQVAAQEA  154 (239)
Q Consensus        78 ~~l~~~v~~~lr~~~~~~~~~ei~~-~R~~i~~~i~~~l~~~l~~~--Gi~i~~v~i~~i~~p~~~~~ai~~k~~A~q~a  154 (239)
                      ..|.+.+++++|+++|+++++|+++ +|+++.+.+.+.+++.+..|  ||+|.+|.|++++||+++.++++ ++.|+.+.
T Consensus        96 ~~I~~~Vrsavr~vig~~tldeVis~~Rd~I~~~I~~~l~e~l~~y~~GI~I~dV~I~~id~P~~V~~afe-rM~aER~k  174 (280)
T cd03406          96 TLIFNKIHHELNQFCSVHTLQEVYIDLFDQIDENLKLALQKDLTRMAPGLEIQAVRVTKPKIPEAIRRNYE-LMEAEKTK  174 (280)
T ss_pred             HHHHHHHHHHHHHHhhhCCHHHHHhccHHHHHHHHHHHHHHHHhccCCCcEEEEEEEEecCCCHHHHHHHH-HHHHHHHh
Confidence            9999999999999999999999996 89999999999999999987  99999999999999999999994 55555443


Q ss_pred             -----HHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 026375          155 -----ERAKYIVEKAEQDKRSAIIRAQGEATSAQL  184 (239)
Q Consensus       155 -----e~~~~~~~~Aeaea~a~~~~Aegea~a~~~  184 (239)
                           ++++.....||+++.+.+++|+|+|...++
T Consensus       175 ~~~~~~~~~~~~~~ae~~~~~~~~~a~~~~~~~~~  209 (280)
T cd03406         175 LLIAIQKQKVVEKEAETERKKAVIEAEKVAQVAKI  209 (280)
T ss_pred             hhhccchhHHHHHHhhHHHHHHHHHHHHHhhHHHH
Confidence                 244556788999999999999998887665

This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H

>COG0330 HflC Membrane protease subunits, stomatin/prohibitin homologs [Posttranslational modification, protein turnover, chaperones]

Probab=99.98  E-value=8e-31  Score=225.36  Aligned_cols=213  Identities=25%  Similarity=0.359  Sum_probs=164.5

Q ss_pred             CCcCCCCccccC-CcceEEcccc----cceEEEEeeeeeEee-eec-ccccCceeEEEEEEEEEeeCCCCHHHHHHHhCc
Q 026375            1 MKNLDLFACVYP-EGTHLMVPWF----ERPVIYDVRARPHLV-EST-SGSRDLQMVKIGLRVLTRPVADKLPTVYRALGE   73 (239)
Q Consensus         1 ~~rfG~~~~~~~-pG~~~~~P~~----~~v~~v~~~~~~~~~-~~~-~~T~D~~~v~v~~~v~y~i~~~~~~~~~~~~~~   73 (239)
                      +.|||++.++++ ||+||++||.    .....++.+.++++. +.+ +.|+|+..|++|++|.|||.+.  ..++.  ..
T Consensus        32 v~r~G~~~~~~~~pGl~f~iP~~~~~~~~~~~~~~~~~~~d~~~~q~viT~D~~~V~vd~~v~~rv~d~--~~~~~--~v  107 (291)
T COG0330          32 VLRFGRYTRTLGEPGLHFKIPFPEAIEEVVVRVDLRERTLDVGPPQEVITKDNVIVSVDAVVQYRVTDP--QKAVY--NV  107 (291)
T ss_pred             EEEecceeeecCCCceEEEcCCccceeeeeeeeeeEEEEeccCCcceEEecCCCEEEEEEEEEEEEcCH--HHHHH--hc
Confidence            369999999998 9999999993    333677888888888 565 9999999999999999998533  33333  34


Q ss_pred             cccccccchHHHHHHHHHHhhcCHhHHHHHHH-HHHHHHHHHHHHHHhcCCeEEEEEEeecccCCHHHHHHHHHHHHHHH
Q 026375           74 NYNERVLPSIIHETLKAVVAQYNASQLITQRE-TVSREIRKILTERAANFNIALDDVSITSLTFGKEFTSAIEAKQVAAQ  152 (239)
Q Consensus        74 ~~~~~~l~~~v~~~lr~~~~~~~~~ei~~~R~-~i~~~i~~~l~~~l~~~Gi~i~~v~i~~i~~p~~~~~ai~~k~~A~q  152 (239)
                      +.++..|.+.+++.+|+++|+++++++++.|. .|...+.+.|++.+++|||.|.+|.|+++.||+++..++..++.|++
T Consensus       108 ~~~~~~l~~~~~~~lR~vig~~~~~e~~~~~~~~i~~~i~~~l~~~~~~~Gi~V~~V~i~~i~~p~ev~~a~~~~~~Aer  187 (291)
T COG0330         108 ENAEAALRQLVQSALRSVIGRMTLDELLTERRAEINAKIREILDEAADPWGIKVVDVEIKDIDPPEEVQAAMEKQMAAER  187 (291)
T ss_pred             CCHHHHHHHHHHHHHHHHHccccHHHHhhCchHHHHHHHHHHHHHhhhhcCcEEEEEEEeecCCCHHHHHHHHHHHHHHH
Confidence            55888899999999999999999999999888 99999999999999999999999999999999999999986666655


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHh---------------------hcC---hhhHHHHHHHHHHHHH
Q 026375          153 EAERAKYIVEKAEQDKRSAIIRAQGEATSAQLIGQAI---------------------ANN---PAFITLRKIEAAREIA  208 (239)
Q Consensus       153 ~ae~~~~~~~~Aeaea~a~~~~Aegea~a~~~~a~a~---------------------~~~---p~~~~~~~le~~~~~a  208 (239)
                      +...   .+..|++++++.+++|+|++++..++++|.                     ...   |.+..+++++.+.+.+
T Consensus       188 ~~ra---~i~~Ae~~~~~~~~~a~g~~~a~~i~aea~~~a~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~  264 (291)
T COG0330         188 DKRA---EILEAEGEAQAAILRAEGEAEAAIILAEAEAEAEVIARAEADAAKIIAAALREAPAAPQALAQRYLEELLEIA  264 (291)
T ss_pred             HHHH---HHHHhHhHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhccHHHHHHHhhcccccchhHHHHHHHHHHHHHHh
Confidence            5333   345555555555555555555555544443                     333   3566679999998876


Q ss_pred             HHhcCCCCE-EEEcCC
Q 026375          209 QTIAHSANK-VFLNSD  223 (239)
Q Consensus       209 ~~~~~~~~~-i~l~~~  223 (239)
                      .   .++++ +++|.+
T Consensus       265 ~---~~~~~~v~~p~~  277 (291)
T COG0330         265 L---AGNSKVVVVPNS  277 (291)
T ss_pred             h---CCCCeEEEecCC
Confidence            4   33444 455544

>KOG2621 consensus Prohibitins and stomatins of the PID superfamily [Energy production and conversion]

Probab=99.98  E-value=1.9e-31  Score=218.56  Aligned_cols=203  Identities=18%  Similarity=0.274  Sum_probs=178.4

Q ss_pred             CcCCCCcc--ccCCcceEEcccccceEEEEeeeeeEeeeec-ccccCceeEEEEEEEEEeeCCCCHHHHHHHhCcccccc
Q 026375            2 KNLDLFAC--VYPEGTHLMVPWFERPVIYDVRARPHLVEST-SGSRDLQMVKIGLRVLTRPVADKLPTVYRALGENYNER   78 (239)
Q Consensus         2 ~rfG~~~~--~~~pG~~~~~P~~~~v~~v~~~~~~~~~~~~-~~T~D~~~v~v~~~v~y~i~~~~~~~~~~~~~~~~~~~   78 (239)
                      -|+|++..  .-|||+.|.+||+++.+++|+|+++++++.+ +.|+|.+.+.||+.|+|||.  ++..-+.  +.++...
T Consensus        67 fRLGRl~~~~~rGPGi~fvlPCIDt~~kVDLRt~sfnVPpqeIltkDsvtvsVdAvVyyri~--dpi~sv~--~V~Da~~  142 (288)
T KOG2621|consen   67 FRLGRLRTGGARGPGLFFLLPCIDTFRKVDLRTQSFNVPPQEILTKDSVTISVDAVVYYRIS--DPIIAVN--NVGDADN  142 (288)
T ss_pred             eeeeeccccCCCCCCeEEEecccceeeeeeeeEEeecCCHHHHhcccceEEEeceEEEEEec--CHHHHHH--hccCHHH
Confidence            38899865  6799999999999999999999999999987 99999999999999999973  3332333  4566666


Q ss_pred             ccchHHHHHHHHHHhhcCHhHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEEeecccCCHHHHHHHHHHHHHHHHHHHHH
Q 026375           79 VLPSIIHETLKAVVAQYNASQLITQRETVSREIRKILTERAANFNIALDDVSITSLTFGKEFTSAIEAKQVAAQEAERAK  158 (239)
Q Consensus        79 ~l~~~v~~~lr~~~~~~~~~ei~~~R~~i~~~i~~~l~~~l~~~Gi~i~~v~i~~i~~p~~~~~ai~~k~~A~q~ae~~~  158 (239)
                      ..+-..++.+|+++|+.++.|++++|+.|+.+++..|++....|||+|++|.|.||++|.+.+.++.+      ++    
T Consensus       143 sTr~lAqttLrn~lgtk~L~eils~r~~is~~~~~~Ld~~T~~WGvkVeRVEikDvrlp~qlqramaa------eA----  212 (288)
T KOG2621|consen  143 ATRLLAQTTLRNYLGTKTLSEILSSREVIAQEAQKALDEATEPWGVKVERVEIKDVRLPAQLQRAMAA------EA----  212 (288)
T ss_pred             HHHHHHHHHHHHHHccCcHHHHHHhHHHHHHHHHHHhhhcccccceEEEEEEEeeeechHhhhhhhhc------hh----
Confidence            67889999999999999999999999999999999999999999999999999999999999999842      11    


Q ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHh---hcChhhHHHHHHHHHHHHHHHhcCCCCEEEEcCCcc
Q 026375          159 YIVEKAEQDKRSAIIRAQGEATSAQLIGQAI---ANNPAFITLRKIEAAREIAQTIAHSANKVFLNSDDL  225 (239)
Q Consensus       159 ~~~~~Aeaea~a~~~~Aegea~a~~~~a~a~---~~~p~~~~~~~le~~~~~a~~~~~~~~~i~l~~~~~  225 (239)
                          .|.+++.++++.||||..|.+.+++|.   +.+|..++++||+++..++.   ..++++++|-.-+
T Consensus       213 ----eA~reA~Akviaaege~~as~al~~aa~v~~~sp~alqLryLqtl~sia~---e~~~tivfP~p~e  275 (288)
T KOG2621|consen  213 ----EATREARAKVIAAEGEKKASEALKEAADVISESPIALQLRYLQTLNSIAA---EKNSTIVFPLPID  275 (288)
T ss_pred             ----hhhhhhhhhHHHHHhhhHHHHHHHHhhccccCCchhhhhhhhhcchhhhc---CCCCCcccCCCHH
Confidence                277888999999999999999998874   68999999999999998885   6778899996543

>KOG2620 consensus Prohibitins and stomatins of the PID superfamily [Energy production and conversion]

Probab=99.97  E-value=5.4e-32  Score=219.36  Aligned_cols=176  Identities=16%  Similarity=0.250  Sum_probs=142.2

Q ss_pred             CCcCCCCccccCCcceEEcccccceEE-EEeeeeeEeeeec-ccccCceeEEEEEEEEEeeCCCCHHHHHHHhCcccccc
Q 026375            1 MKNLDLFACVYPEGTHLMVPWFERPVI-YDVRARPHLVEST-SGSRDLQMVKIGLRVLTRPVADKLPTVYRALGENYNER   78 (239)
Q Consensus         1 ~~rfG~~~~~~~pG~~~~~P~~~~v~~-v~~~~~~~~~~~~-~~T~D~~~v~v~~~v~y~i~~~~~~~~~~~~~~~~~~~   78 (239)
                      +||||+|.++++||+||..|+++++.. .+++...+..+.+ ..|+||+.+.++.+++||+..+.+...  .||.++++.
T Consensus        20 vER~GkF~~iLePG~~fl~p~~d~i~~v~~lkeia~~~~~q~aiTkDNV~v~idgvly~rv~dp~~~dA--sYgvenp~~   97 (301)
T KOG2620|consen   20 VERFGKFHRILEPGLHFLPPVIDKIAYVHSLKEIAILDPKQEAITKDNVFVQIDGVLYYRVVDPYADDA--SYGVENPEY   97 (301)
T ss_pred             HHHhhhhhhhcCCcceechhhhhhHHHHHHHHHHhhcccccceeecccEEEEEEEEEEEEEeccccccc--ccccCCHHH
Confidence            479999999999999999999988854 3444444555544 899999999999999999854444222  248899999


Q ss_pred             ccchHHHHHHHHHHhhcCHhHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEEeecccCCHHHHHHHHHHHHHHHHHHHHH
Q 026375           79 VLPSIIHETLKAVVAQYNASQLITQRETVSREIRKILTERAANFNIALDDVSITSLTFGKEFTSAIEAKQVAAQEAERAK  158 (239)
Q Consensus        79 ~l~~~v~~~lr~~~~~~~~~ei~~~R~~i~~~i~~~l~~~l~~~Gi~i~~v~i~~i~~p~~~~~ai~~k~~A~q~ae~~~  158 (239)
                      .|.+.+++.+|+.+++++++.++..|+.|+..+.+.+++.+..||++|....|+||.||+.+..+|+ .+.+.++..++ 
T Consensus        98 aI~qlaqttmRsevgkltLD~vFeer~~ln~sI~eainkA~~~wG~~clr~eIrDI~pp~~V~~AM~-~q~~AeR~krA-  175 (301)
T KOG2620|consen   98 AIQQLAQTTMRSEVGKLTLDKVFEERNSLNKSIVEAINKAMEAWGYECLRYEIRDIEPPPSVKRAMN-MQNEAERMKRA-  175 (301)
T ss_pred             HHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhcCCCHHHHHHHH-HHHHHHHHHHH-
Confidence            9999999999999999999999999999999999999999999999999999999999999999996 44443333333 


Q ss_pred             HHHHHHHHHHHHHHHHHhhHHHH
Q 026375          159 YIVEKAEQDKRSAIIRAQGEATS  181 (239)
Q Consensus       159 ~~~~~Aeaea~a~~~~Aegea~a  181 (239)
                       .+..+|+++.+.+.+|||++++
T Consensus       176 -ailesEger~~~InrAEGek~s  197 (301)
T KOG2620|consen  176 -AILESEGERIAQINRAEGEKES  197 (301)
T ss_pred             -HHhhhhhhhHHhhhhhcchhhh
Confidence             2455555555555555555444

>cd03402 Band_7_2 A subgroup of the band 7 domain of flotillin (reggie) like proteins

Probab=99.97  E-value=3e-29  Score=206.32  Aligned_cols=148  Identities=20%  Similarity=0.249  Sum_probs=129.5

Q ss_pred             CCcCCCCcccc-CCcceEEcccccceEEEEeeeeeEeeeec-ccccCceeEEEEEEEEEeeCCCCHHHHHHHhCcccccc
Q 026375            1 MKNLDLFACVY-PEGTHLMVPWFERPVIYDVRARPHLVEST-SGSRDLQMVKIGLRVLTRPVADKLPTVYRALGENYNER   78 (239)
Q Consensus         1 ~~rfG~~~~~~-~pG~~~~~P~~~~v~~v~~~~~~~~~~~~-~~T~D~~~v~v~~~v~y~i~~~~~~~~~~~~~~~~~~~   78 (239)
                      ++|||++.++. +||+||++||++ ...+|++.++++.+.. +.|+||.++.+++.+.|||. +...++|   +.+.+..
T Consensus        13 v~rfGk~~~t~~~pGL~~~~P~~~-~~~vd~R~~~~~~~~~~v~T~D~~~v~V~~~V~~rV~-Dp~ka~~---~v~~~~~   87 (219)
T cd03402          13 LVLFGRYIGTIRRTGLRWVNPFSS-KKRVSLRVRNFESEKLKVNDANGNPIEIAAVIVWRVV-DTAKAVF---NVDDYEE   87 (219)
T ss_pred             EEEcCcCcccccCCceEEEeccce-EEEEeeEEEEecCCCceeEcCCCCEEEEEEEEEEEEc-CHHHHHH---HcCCHHH
Confidence            46999998765 999999999985 5889999999988876 99999999999999999984 3333334   4466688


Q ss_pred             ccchHHHHHHHHHHhhcCHhHHHH-------HHHHHHHHHHHHHHHHHhcCCeEEEEEEeecccCCHHHHHHHHHHHHHH
Q 026375           79 VLPSIIHETLKAVVAQYNASQLIT-------QRETVSREIRKILTERAANFNIALDDVSITSLTFGKEFTSAIEAKQVAA  151 (239)
Q Consensus        79 ~l~~~v~~~lr~~~~~~~~~ei~~-------~R~~i~~~i~~~l~~~l~~~Gi~i~~v~i~~i~~p~~~~~ai~~k~~A~  151 (239)
                      .|.+.+++++|+++|+|+++++++       +|++|.+++.+.+++.++.|||+|.++.|+++.||+++.++|.++++|+
T Consensus        88 ~l~~~~~salR~vig~~~~d~il~~~~~l~~~r~~I~~~l~~~l~~~l~~~GI~V~~v~I~~l~~p~ei~~am~~R~~Ae  167 (219)
T cd03402          88 FVHIQSESALRHVASQYPYDDPVNKETSLRGNSDEVSDELARELQERLAVAGVEVVEARITHLAYAPEIAQAMLQRQQAS  167 (219)
T ss_pred             HHHHHHHHHHHHHHccCcHHHHhccccccccCHHHHHHHHHHHHHHHHHhhCcEEEEEEEEeecCCHHHHHHHHHHHHHH
Confidence            999999999999999999999985       5799999999999999999999999999999999999999998776544


Q ss_pred             HH
Q 026375          152 QE  153 (239)
Q Consensus       152 q~  153 (239)
                      .+
T Consensus       168 ~~  169 (219)
T cd03402         168 AI  169 (219)
T ss_pred             HH
Confidence            33

This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H

>PF01145 Band_7: SPFH domain / Band 7 family; InterPro: IPR001107 Band 7 protein is an integral membrane protein which is thought to regulate cation conductance

Probab=99.96  E-value=5.9e-29  Score=198.43  Aligned_cols=152  Identities=26%  Similarity=0.430  Sum_probs=112.5

Q ss_pred             CcCCCCccccCCcceEEcccccceEEEEeeeeeEeeee---cccccCceeEEEEEEEEEeeCCCCHHHHHHHh--Ccccc
Q 026375            2 KNLDLFACVYPEGTHLMVPWFERPVIYDVRARPHLVES---TSGSRDLQMVKIGLRVLTRPVADKLPTVYRAL--GENYN   76 (239)
Q Consensus         2 ~rfG~~~~~~~pG~~~~~P~~~~v~~v~~~~~~~~~~~---~~~T~D~~~v~v~~~v~y~i~~~~~~~~~~~~--~~~~~   76 (239)
                      .+||++..+++||+||++||+++++.||++.+++++..   .+.|+|++++.+++++.|+|  ++++.++.++  +.+..
T Consensus        12 ~~~G~~~~~~~~G~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~t~D~~~v~v~~~v~y~i--~~~~~~~~~~~~~~~~~   89 (179)
T PF01145_consen   12 VRFGKVKDVLGPGLHFVIPFIQKVYVYPTRVQTIEFTREPITVRTKDGVPVDVDVTVTYRI--EDPPKFVQNYEGGEEDP   89 (179)
T ss_dssp             --------------------EEE--S--SS-EEEEEEE--EEEE-TTS-EEEEEEEEEEEE--S-CCCCCCCCSS-HCHH
T ss_pred             EECCeEeEEECCCeEEEeCCcCeEEEEeCEEEecccchhhhhhhhcccceeeeeEEEEEEe--chHHHHHHhhhcchhhh
Confidence            46999999999999999999999999999999999998   69999999999999999998  5556677777  35788


Q ss_pred             ccccchHHHHHHHHHHhhcCHhHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEEeecccCCHHHHHHHHHHHHHHHHHH
Q 026375           77 ERVLPSIIHETLKAVVAQYNASQLITQRETVSREIRKILTERAANFNIALDDVSITSLTFGKEFTSAIEAKQVAAQEAE  155 (239)
Q Consensus        77 ~~~l~~~v~~~lr~~~~~~~~~ei~~~R~~i~~~i~~~l~~~l~~~Gi~i~~v~i~~i~~p~~~~~ai~~k~~A~q~ae  155 (239)
                      +..|++.+++++|+++++|++++++++|.++.+.+.+.|++.+.+|||+|.+|.|.++.+|+++.++|..++.++++++
T Consensus        90 ~~~l~~~~~~~~r~~~~~~~~~~~~~~r~~~~~~v~~~l~~~~~~~Gi~i~~v~i~~~~~~~~~~~~i~~~~~a~~~~~  168 (179)
T PF01145_consen   90 ENLLRQIVESALREVISSYSLEEIYSNREEIADEVREQLQEALEEYGIEITSVQITDIDPPQEVEEAIEEKQRAEQEAQ  168 (179)
T ss_dssp             HHHHHHHHHHHHHHHHHCS-HHHHHHTHHHHHHHHHHHHHHHHGGGTEEEEEEEEEEEEECTTHHHHHHHHHHHHHHH-
T ss_pred             hhhhhhhhhhhhheEeeeeehHHhhhhhhhhhHhHHHHHhhhccccEEEEEEEEEeecCCCHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999999988877776653

A variety of proteins belong to this family. These include the prohibitins, cytoplasmic anti-proliferative proteins and stomatin, an erythrocyte membrane protein. Bacterial HflC protein also belongs to this family. Note: Band 4.1 (IPR021187 from INTERPRO) and Band 7 proteins refer to human erythrocyte membrane proteins separated by SDS polyacrylamide gels and stained with coomassie blue [].; PDB: 2RPB_A 3BK6_B 1WIN_A.

>smart00244 PHB prohibitin homologues

Probab=99.95  E-value=5.9e-27  Score=183.69  Aligned_cols=143  Identities=29%  Similarity=0.475  Sum_probs=127.3

Q ss_pred             CcCCCCccccCCcceEEcccccceEEEEeeeeeEeeeec-ccccCceeEEEEEEEEEeeCCCCHHHHHHHhCcccccccc
Q 026375            2 KNLDLFACVYPEGTHLMVPWFERPVIYDVRARPHLVEST-SGSRDLQMVKIGLRVLTRPVADKLPTVYRALGENYNERVL   80 (239)
Q Consensus         2 ~rfG~~~~~~~pG~~~~~P~~~~v~~v~~~~~~~~~~~~-~~T~D~~~v~v~~~v~y~i~~~~~~~~~~~~~~~~~~~~l   80 (239)
                      ++||++.++++||+||++||+++++.+|++.+.++.+.. +.|+|++++.+++++.|||. +....++...|.+  ...|
T Consensus        15 ~~~G~~~~~~~pG~~~~~P~~~~~~~~~~~~~~~~~~~~~~~t~d~~~v~v~~~v~~rv~-d~~~~~~~~~~~~--~~~l   91 (160)
T smart00244       15 ERLGRVLRVLGPGLHFLIPFIDRVKKVDLRAQTDDVPPQEIITKDNVKVSVDAVVYYRVL-DPLKAVYRVLDAD--YAVI   91 (160)
T ss_pred             EecCccccccCCCEEEEecceeEEEEEeeEEEeecCCceEEEecCCcEEEEeEEEEEEEc-cHHHHhhhcCCHH--HHHH
Confidence            589999989999999999999999999999999988764 89999999999999999974 3344444433332  2589


Q ss_pred             chHHHHHHHHHHhhcCHhHHHH-HHHHHHHHHHHHHHHHHhcCCeEEEEEEeecccCCHHHHHHHHHH
Q 026375           81 PSIIHETLKAVVAQYNASQLIT-QRETVSREIRKILTERAANFNIALDDVSITSLTFGKEFTSAIEAK  147 (239)
Q Consensus        81 ~~~v~~~lr~~~~~~~~~ei~~-~R~~i~~~i~~~l~~~l~~~Gi~i~~v~i~~i~~p~~~~~ai~~k  147 (239)
                      .+.+++++|+++++++++++++ +|++|++.+.+.+++.+++||++|.++.|+++++|+++.++|++|
T Consensus        92 ~~~i~~~ir~~i~~~~~~~i~~~~r~~i~~~v~~~l~~~~~~~Gi~i~~v~i~~i~~p~~i~~ai~~k  159 (160)
T smart00244       92 EQLAQTTLRSVIGKMTLDELLTDEREKISENIREELNERAEAWGIEVEDVEIKDIRLPEEIQEAMEQQ  159 (160)
T ss_pred             HHHHHHHHHHHHccccHHHHHHhhHHHHHHHHHHHHHHHHHhCCCEEEEEEEEecCCCHHHHHHHHhh
Confidence            9999999999999999999998 799999999999999999999999999999999999999999765

prohibitin homologues

>cd03400 Band_7_1 A subgroup of the band 7 domain of flotillin (reggie) like proteins

Probab=99.90  E-value=9.1e-23  Score=153.93  Aligned_cols=120  Identities=22%  Similarity=0.343  Sum_probs=112.8

Q ss_pred             EEeeeeeEeeeecccccCceeEEEEEEEEEeeCCCCHHHHHHHhCccccccccchHHHHHHHHHHhhcCHhHHHH-HHHH
Q 026375           28 YDVRARPHLVESTSGSRDLQMVKIGLRVLTRPVADKLPTVYRALGENYNERVLPSIIHETLKAVVAQYNASQLIT-QRET  106 (239)
Q Consensus        28 v~~~~~~~~~~~~~~T~D~~~v~v~~~v~y~i~~~~~~~~~~~~~~~~~~~~l~~~v~~~lr~~~~~~~~~ei~~-~R~~  106 (239)
                      ||++.++.+.+..+.|+||+.+.+++++.|||++.++..+|.++|.++.+..|.+.+++++|+++|+|+++++++ +|++
T Consensus         3 ~~~r~~~~~~~~~v~T~D~~~v~vd~~v~y~V~~~~~~~~~~~~~~~~~~~~i~~~~~~~lR~~~~~~~~~e~i~~~R~~   82 (124)
T cd03400           3 YSTRLQEVDEKIDVLSKEGLSINADVSVQYRINPNKAAAVHSKLGTDYARKIVRPTFRSLVREVTGRYTAEQIYSTKRKE   82 (124)
T ss_pred             ccceeeecccceEEECCCCCEEEEEEEEEEEEChhhHHHHHHHhCcchhheeechhHHHHHHHHhcCCCHHHHhhhhHHH
Confidence            678888888777899999999999999999999888888999998777888999999999999999999999995 8999


Q ss_pred             HHHHHHHHHHHHHhcCCeEEEEEEeecccCCHHHHHHHHHH
Q 026375          107 VSREIRKILTERAANFNIALDDVSITSLTFGKEFTSAIEAK  147 (239)
Q Consensus       107 i~~~i~~~l~~~l~~~Gi~i~~v~i~~i~~p~~~~~ai~~k  147 (239)
                      |++.+.+.+++.+.+|||+|.+|.|+++.||+++.++|++|
T Consensus        83 i~~~i~~~l~~~~~~~Gi~v~~v~i~~i~~P~~v~~aI~~k  123 (124)
T cd03400          83 IESAIKKELIEEFVGDGLILEEVLLRNIKLPDQIADAIEAK  123 (124)
T ss_pred             HHHHHHHHHHHHhccCCeEEEEEEEecccCCHHHHHHHHhc
Confidence            99999999999999999999999999999999999999865

This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H

>KOG2962 consensus Prohibitin-related membrane protease subunits [General function prediction only]

Probab=99.85  E-value=1.8e-19  Score=144.25  Aligned_cols=177  Identities=16%  Similarity=0.274  Sum_probs=140.9

Q ss_pred             cCCCC-ccccCCcceEEcccccceEEEEeeeeeEeeeec-ccccCceeEEEE-EEEEEeeCCCCHHHHHHHhCccccccc
Q 026375            3 NLDLF-ACVYPEGTHLMVPWFERPVIYDVRARPHLVEST-SGSRDLQMVKIG-LRVLTRPVADKLPTVYRALGENYNERV   79 (239)
Q Consensus         3 rfG~~-~~~~~pG~~~~~P~~~~v~~v~~~~~~~~~~~~-~~T~D~~~v~v~-~~v~y~i~~~~~~~~~~~~~~~~~~~~   79 (239)
                      |-|.. ..+.+||+|+.+||+.++..+.++.|+-++..- |.|+.|+.+.+| +-|.-.+.++-+.++..+|+.+|...+
T Consensus        36 RGGALL~~~t~PG~Hl~lPFiTt~ksVQvTLQTDev~nvPCGTsGGVlIyfdrIEVVN~L~~d~Vydiv~NYtvdYD~~l  115 (322)
T KOG2962|consen   36 RGGALLTSITGPGFHLMLPFITTYKSVQVTLQTDEVKNVPCGTSGGVLIYFDRIEVVNFLRPDAVYDIVKNYTVDYDKTL  115 (322)
T ss_pred             ecceeeeccCCCCcEEEeeeeeceeeeEEEeeccccccCCCCCCCcEEEEEehhhhhhhhchhHHHHHHHHcccCCcchh
Confidence            45554 457899999999999999999999999888765 999999999887 444445567777888999999999999


Q ss_pred             cchHHHHHHHHHHhhcCHhHHH-HHHHHHHHHHHHHHHHHHhcC--CeEEEEEEeecccCCHHHHHHHHHHHHHHH----
Q 026375           80 LPSIIHETLKAVVAQYNASQLI-TQRETVSREIRKILTERAANF--NIALDDVSITSLTFGKEFTSAIEAKQVAAQ----  152 (239)
Q Consensus        80 l~~~v~~~lr~~~~~~~~~ei~-~~R~~i~~~i~~~l~~~l~~~--Gi~i~~v~i~~i~~p~~~~~ai~~k~~A~q----  152 (239)
                      |.+.+...+...+|.+++.|+| .--++|.+.+++.|++.+..+  |+.|..|.++....|+.+...++ .+.++.    
T Consensus       116 IfnKiHHE~NQFCS~HtLQeVYIdlFDqIDE~lK~ALQ~Dl~~mAPGl~iqaVRVTKPkIPEaiRrN~E-~ME~EkTKlL  194 (322)
T KOG2962|consen  116 IFNKIHHELNQFCSVHTLQEVYIDLFDQIDENLKDALQADLTRMAPGLEIQAVRVTKPKIPEAIRRNFE-LMEAEKTKLL  194 (322)
T ss_pred             hhhHHHHHHHhHhhhhHHHHHHHHHHHHHhHHHHHHHHHHHHhhCCCcEEEEEEecCCCChHHHHHhHH-HHHHHhhhhH
Confidence            9999999999999999999999 678999999999999999887  99999999999999999999985 322221    


Q ss_pred             -HHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 026375          153 -EAERAKYIVEKAEQDKRSAIIRAQGEAT  180 (239)
Q Consensus       153 -~ae~~~~~~~~Aeaea~a~~~~Aegea~  180 (239)
                       .+++++..-..||.++...+++||-.|.
T Consensus       195 iA~ekQkVvEKeAETerkkAviEAEK~Aq  223 (322)
T KOG2962|consen  195 IAAEKQKVVEKEAETERKKAVIEAEKNAQ  223 (322)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence             1223333333455555555555554333

>cd03399 Band_7_flotillin Band_7_flotillin: a subgroup of the band 7 domain of flotillin (reggie) like proteins

Probab=99.80  E-value=4.1e-19  Score=134.66  Aligned_cols=118  Identities=14%  Similarity=0.225  Sum_probs=103.8

Q ss_pred             EEeeeeeEeeeec-ccccCceeEEEEEEEEEeeCCCC--HHHHHHHhC---ccccccccchHHHHHHHHHHhhcCHhHHH
Q 026375           28 YDVRARPHLVEST-SGSRDLQMVKIGLRVLTRPVADK--LPTVYRALG---ENYNERVLPSIIHETLKAVVAQYNASQLI  101 (239)
Q Consensus        28 v~~~~~~~~~~~~-~~T~D~~~v~v~~~v~y~i~~~~--~~~~~~~~~---~~~~~~~l~~~v~~~lr~~~~~~~~~ei~  101 (239)
                      +|++.+.++++.+ +.|+|++++.+++++.|||.++.  ...++.+|+   .+.....+.+.+++++|+++|+|+++|++
T Consensus         2 ~~lr~~~~~~~~q~v~TkD~~~v~vd~~~~~rV~d~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~lR~~ig~~tl~el~   81 (128)
T cd03399           2 LSLTSMVLRVGSEAVITRDGVRVDVTAVFQVKVGGTEEAIATAAERFLGKSEEEIEELVKEVLEGHLRAVVGTMTVEEIY   81 (128)
T ss_pred             ccccceeeeccccceecCCCcEEEEEEEEEEEeCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhCCHHHHH
Confidence            4678888888876 89999999999999999986554  334455553   25678889999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCeEEEEEEeecccCCHHHHHHHH
Q 026375          102 TQRETVSREIRKILTERAANFNIALDDVSITSLTFGKEFTSAIE  145 (239)
Q Consensus       102 ~~R~~i~~~i~~~l~~~l~~~Gi~i~~v~i~~i~~p~~~~~ai~  145 (239)
                      ++|++|.+.+.+.++..+++|||+|.++.|++|.+|+++.+++-
T Consensus        82 ~~R~~i~~~i~~~v~~~~~~~Gi~i~~v~I~~i~~~~~~~~~~~  125 (128)
T cd03399          82 EDRDKFAEQVQEVVAPDLNKMGLELDSFTIKDITDTDGYLNNLG  125 (128)
T ss_pred             HhHHHHHHHHHHHHHHHHHHCCCEEEEEeeEEecCCCCCHHHcC
Confidence            99999999999999999999999999999999999999988763

This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. These two proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and, interact with a variety of proteins. Flotillins may play a role in the progression of prion disease, in the pathogenesis of neurodegenerative diseases such as Parkinson's and Alzheimer's disease and, in cancer invasion and metastasis.

>cd03408 Band_7_5 A subgroup of the band 7 domain of flotillin (reggie) like proteins

Probab=99.79  E-value=1.6e-18  Score=141.84  Aligned_cols=143  Identities=16%  Similarity=0.196  Sum_probs=119.1

Q ss_pred             CcCCCCccccCCcceEEc----cccc---------------ceEEEEeeeeeEee-------eecccccCceeEEEEEEE
Q 026375            2 KNLDLFACVYPEGTHLMV----PWFE---------------RPVIYDVRARPHLV-------ESTSGSRDLQMVKIGLRV   55 (239)
Q Consensus         2 ~rfG~~~~~~~pG~~~~~----P~~~---------------~v~~v~~~~~~~~~-------~~~~~T~D~~~v~v~~~v   55 (239)
                      .|+|++.++++||.|+.+    |++.               .++.++.+.+....       .....|+|++++.+++++
T Consensus        28 ~~~Gk~~~~~~~g~~~~~~~~~p~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~  107 (207)
T cd03408          28 VNEGKVADVFAPGGYYLTTNNLPVLAFLLSGDKGFSSPFKGEVYFFNTRVFTDLLWGTPAPVFGRDSEFGGVPLRAFGTY  107 (207)
T ss_pred             EECCEEEEEecCCcceeeecCccHHHHhcChhhhCcCCceeEEEEEECEEEeccccCCCCCeeeeCCccceEEEEeeEEE
Confidence            589999999988888665    4432               36677777665421       123568899999999999


Q ss_pred             EEeeCCCCHHHHHHHhCcc-------ccccccchHHHHHHHHHHhhcCHhHHHHH--HHHHHHHHHHHHHHHHhcCCeEE
Q 026375           56 LTRPVADKLPTVYRALGEN-------YNERVLPSIIHETLKAVVAQYNASQLITQ--RETVSREIRKILTERAANFNIAL  126 (239)
Q Consensus        56 ~y~i~~~~~~~~~~~~~~~-------~~~~~l~~~v~~~lr~~~~~~~~~ei~~~--R~~i~~~i~~~l~~~l~~~Gi~i  126 (239)
                      .|||  .++..++.+++..       .....|.+.+++++|++++++++++++.+  |++|++.+.+.+++.+.+||++|
T Consensus       108 ~~kI--~Dp~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~lr~~i~~~~~~~l~~~~~r~~i~~~v~~~l~~~~~~~Gi~i  185 (207)
T cd03408         108 SLKV--TDPVLFVTNIVGTRGLFTVEDLEKSLRALIVAALSSALSESGLAVMLLAANRDELSKAVREALAPWFASFGLEL  185 (207)
T ss_pred             EEEE--cCHHHHHHHhcCCCcceeHHHHHHHHHHHHHHHHHHHHHhcCCeeEEhhhhHHHHHHHHHHHHHHHHHhcCcEE
Confidence            9997  4667888888531       35678999999999999999999999976  99999999999999999999999


Q ss_pred             EEEEeecccCCHHHHHHHHH
Q 026375          127 DDVSITSLTFGKEFTSAIEA  146 (239)
Q Consensus       127 ~~v~i~~i~~p~~~~~ai~~  146 (239)
                      .+|.|++|.+|+++.++|.+
T Consensus       186 ~~v~I~~i~~p~e~~~ai~~  205 (207)
T cd03408         186 VSVYIESISYPDEVQKLIDK  205 (207)
T ss_pred             EEEEEEeecCCHHHHHHHHh
Confidence            99999999999999999864

This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H

>KOG2668 consensus Flotillins [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]

Probab=99.75  E-value=6.9e-16  Score=130.32  Aligned_cols=140  Identities=12%  Similarity=0.172  Sum_probs=118.0

Q ss_pred             cCCCCccccCCcceEEcccccceEEEEeeeeeEeeeec-ccccCceeEEEEEEEEEeeCCCCHHHHHH-----HhC--cc
Q 026375            3 NLDLFACVYPEGTHLMVPWFERPVIYDVRARPHLVEST-SGSRDLQMVKIGLRVLTRPVADKLPTVYR-----ALG--EN   74 (239)
Q Consensus         3 rfG~~~~~~~pG~~~~~P~~~~v~~v~~~~~~~~~~~~-~~T~D~~~v~v~~~v~y~i~~~~~~~~~~-----~~~--~~   74 (239)
                      -+|.-...+-+| .|.+|| +++..||+.+.++++..+ +.|+.|+++.|....+.+|..+++..+..     ..|  .+
T Consensus        15 g~g~~~~~lv~~-~wvf~w-q~~q~~~ln~mtl~~~~e~v~tsegvP~~vtgVaqvki~~~~~~elL~~A~e~flgK~~~   92 (428)
T KOG2668|consen   15 GGGIEDIKLVKK-SWVFPW-QQCTVFDVSPMTLTFKVENVMTSEGVPFVVTGVAQVKIRVDDADELLLYACEQFLGKSSN   92 (428)
T ss_pred             cccccCceeccc-ceeeee-eeeeEEeecceeeeeecchhhcccCCceEeeeeEEEeeccCCHHHHHHHHHHHhcCCCHH
Confidence            355554445554 377788 899999999999999887 99999999999999999988787544322     123  34


Q ss_pred             ccccccchHHHHHHHHHHhhcCHhHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEEeecccCCH--HHHHHH
Q 026375           75 YNERVLPSIIHETLKAVVAQYNASQLITQRETVSREIRKILTERAANFNIALDDVSITSLTFGK--EFTSAI  144 (239)
Q Consensus        75 ~~~~~l~~~v~~~lr~~~~~~~~~ei~~~R~~i~~~i~~~l~~~l~~~Gi~i~~v~i~~i~~p~--~~~~ai  144 (239)
                      ....++...+.+..|.++++||++|||.+|.+|...+++..+..+.++||.|.+..|+|+...+  +|..++
T Consensus        93 eIn~~vl~tlEGh~Rai~asmTvEEIyKdrk~F~k~Vfeva~~dl~~mGi~I~s~tiKdl~D~~g~~YlssL  164 (428)
T KOG2668|consen   93 EINELVLGTLEGHTRAILASMTVEEIYKDRKEFKKEVFEVAQLDLGQMGIVIYSATIKDLVDVPGHEYLSSL  164 (428)
T ss_pred             HHHHHHHHHhhhHHHHHHHhccHHHHHhhHHHHHHHHHHHhhhhhhhcceEEEEeEhhhhhcccchHHHHHh
Confidence            5567777889999999999999999999999999999999999999999999999999998877  698888

>COG2268 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=99.68  E-value=1.9e-15  Score=136.35  Aligned_cols=146  Identities=15%  Similarity=0.213  Sum_probs=126.5

Q ss_pred             CCCccccCCcceEEcccccceEEEEeeeeeEeeeec-ccccCceeEEEEEEEEEeeCCC--CHHHHHHHhCcc----ccc
Q 026375            5 DLFACVYPEGTHLMVPWFERPVIYDVRARPHLVEST-SGSRDLQMVKIGLRVLTRPVAD--KLPTVYRALGEN----YNE   77 (239)
Q Consensus         5 G~~~~~~~pG~~~~~P~~~~v~~v~~~~~~~~~~~~-~~T~D~~~v~v~~~v~y~i~~~--~~~~~~~~~~~~----~~~   77 (239)
                      |.-.+++.+|+||++|+++...++|++..++++... +.|+||.++++++..+.+|.++  +...+..++|..    ...
T Consensus        58 g~~~~vV~gGg~~v~Pi~q~~~r~~l~~i~l~v~~~~v~t~Dg~p~~v~~~a~v~i~~~~~dI~~aae~~g~Kg~~~~l~  137 (548)
T COG2268          58 GGGQKVVRGGGAIVMPIFQTIERMSLTTIKLEVEIDNVYTKDGMPLNVEAVAYVKIGDTFQDIATAAERFGGKGSREDLE  137 (548)
T ss_pred             cCCccEEecCceEEecceeeeEEeeeeeeeeeeeeeeeEecCCCccceeEEEEEEecCCHHHHHHHHHHhccccCHHHHH
Confidence            444678899999999999999999999999998854 9999999999999999888533  344555666643    556


Q ss_pred             cccchHHHHHHHHHHhhcCHhHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEEeecccCC-------HHHHHHHHHHHHH
Q 026375           78 RVLPSIIHETLKAVVAQYNASQLITQRETVSREIRKILTERAANFNIALDDVSITSLTFG-------KEFTSAIEAKQVA  150 (239)
Q Consensus        78 ~~l~~~v~~~lr~~~~~~~~~ei~~~R~~i~~~i~~~l~~~l~~~Gi~i~~v~i~~i~~p-------~~~~~ai~~k~~A  150 (239)
                      ..+...+.+++|.+++++|+++++++|..|.+.+.+.+...|++.|+.|+++.|.++..+       ..|.++.-.+.++
T Consensus       138 ~~~~~~l~~~lR~i~a~~t~~el~edR~~F~~~V~~~v~~dL~k~Gl~l~s~~I~~i~d~~~~~~d~~~yLda~G~r~i~  217 (548)
T COG2268         138 QLAEDTLEGALRAVLAQMTVEELNEDRLGFAQVVQEVVGDDLSKMGLVLDSLAINDINDTSKENQDPNNYLDALGRRRIA  217 (548)
T ss_pred             HHHHHHHHHHHHHHHHhcCHHHHhhHHhhHHHHHHHHHHHHHHhcCeeeeeeeecccccccccccChhhhhhhcChHHHH
Confidence            778889999999999999999999999999999999999999999999999999999999       8999999655443

>cd02106 Band_7 The band 7 domain of flotillin (reggie) like proteins

Probab=99.67  E-value=9.4e-16  Score=113.89  Aligned_cols=106  Identities=22%  Similarity=0.353  Sum_probs=93.3

Q ss_pred             cccccCceeEEEEEEEEEeeCCCCHHHHHHHhCccccccccchHHHHHHHHHHhhcCHhHHHHHHHHHHHHHHHHHHHHH
Q 026375           40 TSGSRDLQMVKIGLRVLTRPVADKLPTVYRALGENYNERVLPSIIHETLKAVVAQYNASQLITQRETVSREIRKILTERA  119 (239)
Q Consensus        40 ~~~T~D~~~v~v~~~v~y~i~~~~~~~~~~~~~~~~~~~~l~~~v~~~lr~~~~~~~~~ei~~~R~~i~~~i~~~l~~~l  119 (239)
                      .+.|+||+++.+++++.|+|.+.. ..++...+.+. ...|.+.+.+++|+++++++++++.++|++|++.+++.+...+
T Consensus        15 ~~~t~d~~~i~~~~~~~~~v~~~~-~~~~~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~i~~~v~~~l~~~~   92 (121)
T cd02106          15 EVLTKDNVPVRVDAVVQYRVVDPV-KALYNVRDPED-EEALRQLAQSALRSVIGKMTLDELLEDRDEIAAEVREALQEDL   92 (121)
T ss_pred             eEEecCCCEEEEEEEEEEEEeCHH-HHHHhcCCccH-HHHHHHHHHHHHHHHHccccHHHHHhhHHHHHHHHHHHHHHHH
Confidence            378999999999999999986544 34443333333 6789999999999999999999999999999999999999999


Q ss_pred             hcCCeEEEEEEeecccCCHHHHHHHHHH
Q 026375          120 ANFNIALDDVSITSLTFGKEFTSAIEAK  147 (239)
Q Consensus       120 ~~~Gi~i~~v~i~~i~~p~~~~~ai~~k  147 (239)
                      ..||++|.+|.|+++.+|+++.++++++
T Consensus        93 ~~~Gi~i~~v~i~~i~~~~~~~~ai~~~  120 (121)
T cd02106          93 DKYGIEVVDVRIKDIDPPEEVQEAMEDR  120 (121)
T ss_pred             HhcCCEEEEEEEEecCCCHHHHHHHHhh
Confidence            9999999999999999999999999754

This group contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic HflK/C plays a role i

>PF13421 Band_7_1: SPFH domain-Band 7 family

Probab=99.08  E-value=3.8e-09  Score=86.49  Aligned_cols=142  Identities=15%  Similarity=0.141  Sum_probs=103.5

Q ss_pred             CCCCccccCCcceEE-------------------cccccceEEEEeeeee-Eeeee----cccccCceeEEEEEEEEEee
Q 026375            4 LDLFACVYPEGTHLM-------------------VPWFERPVIYDVRARP-HLVES----TSGSRDLQMVKIGLRVLTRP   59 (239)
Q Consensus         4 fG~~~~~~~pG~~~~-------------------~P~~~~v~~v~~~~~~-~~~~~----~~~T~D~~~v~v~~~v~y~i   59 (239)
                      -|++..+.+||.|-.                   .||-..|+.++++... ..+..    .....+-..|.+.+.-.|.+
T Consensus        30 ~G~i~d~~~pG~y~l~T~n~P~l~~l~~~~~Gg~spf~~eVyFvn~~~~~~~kwGT~~pi~~~D~~~~~v~lra~G~ys~  109 (211)
T PF13421_consen   30 DGKIADVFGPGRYTLDTDNIPILSTLKNWKFGGESPFKAEVYFVNTKEITNIKWGTPNPIPYRDPEYGPVRLRAFGTYSF  109 (211)
T ss_pred             CCEEEEEecCceEEEecCCchHHHHHhhhccCCCCCceEEEEEEECeEecCCccCCCCCeeecCCCCCcEEEEEEEEEEE
Confidence            477766789998832                   3555567777777642 22221    11222332455555555555


Q ss_pred             CCCCHHHHHHHhC-c------cccccccchHHHHHHHHHHhh--cCHhHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEE
Q 026375           60 VADKLPTVYRALG-E------NYNERVLPSIIHETLKAVVAQ--YNASQLITQRETVSREIRKILTERAANFNIALDDVS  130 (239)
Q Consensus        60 ~~~~~~~~~~~~~-~------~~~~~~l~~~v~~~lr~~~~~--~~~~ei~~~R~~i~~~i~~~l~~~l~~~Gi~i~~v~  130 (239)
                      ...++..|+.++- .      +.....+++.+.+.+.+.++.  +++.||..+-.+|++.+++.|+..+..+|++|.++.
T Consensus       110 rI~Dp~~F~~~~vg~~~~~~~~~i~~~l~~~i~~~i~~~l~~~~~~~~~i~a~~~eis~~~~~~l~~~~~~~Gi~l~~f~  189 (211)
T PF13421_consen  110 RIVDPVLFIRNLVGTQSEFTTEEINEQLRSEIVQAIADALAESKISILDIPAHLDEISEALKEKLNPEFERYGIELVDFG  189 (211)
T ss_pred             EEeCHHHHHHhhCCCCCcccHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCcEEEEEE
Confidence            5677888888763 1      334556777777777777775  789999999999999999999999999999999999


Q ss_pred             eecccCCHHHHHHHH
Q 026375          131 ITSLTFGKEFTSAIE  145 (239)
Q Consensus       131 i~~i~~p~~~~~ai~  145 (239)
                      |.+|++|+++++.|.
T Consensus       190 I~~i~~pee~~~~i~  204 (211)
T PF13421_consen  190 IESISFPEEVQKAID  204 (211)
T ss_pred             EEeecCCHHHHHHHH
Confidence            999999999999995

>PTZ00491 major vault protein; Provisional

Probab=98.32  E-value=4.3e-05  Score=72.83  Aligned_cols=132  Identities=11%  Similarity=0.046  Sum_probs=86.6

Q ss_pred             cccCCcceEEcccccceEEEEeeee---------eEe------e-e--ecccccCceeEEEEEEEEEeeC--CCCH---H
Q 026375            9 CVYPEGTHLMVPWFERPVIYDVRAR---------PHL------V-E--STSGSRDLQMVKIGLRVLTRPV--ADKL---P   65 (239)
Q Consensus         9 ~~~~pG~~~~~P~~~~v~~v~~~~~---------~~~------~-~--~~~~T~D~~~v~v~~~v~y~i~--~~~~---~   65 (239)
                      .+.||-+.+.-|- +.+..+++..=         .+-      + .  ..+-|+|...+.+.++.+|+++  +++.   .
T Consensus       485 vv~GP~~v~L~pd-E~ftvlsLSgg~PK~~n~i~~l~l~lGPdf~tD~i~vET~DhArL~l~LsYnW~F~v~~~d~~~~~  563 (850)
T PTZ00491        485 VVFGPDLVMLEPD-EEFTVLSLSGGKPKVPNQIHSLHLFLGPDFMTDVIHVETSDHARLALQLSYNWYFDVTDGNPEDAQ  563 (850)
T ss_pred             EEECCceEEecCC-CceEEEEecCCCCCCcchhhhhhhhhCCccceeEEEEEEcccceEEEEEEEEEEEecCCCChhhHh
Confidence            3567777777776 55555554321         110      1 1  1256999999999999999875  3333   3


Q ss_pred             HHHHHhCccccccccchHHHHHHHHHHhhcCHhHHHHHHHH-HHHHHHHHHHH--------HHhcCCeEEEEEEeecccC
Q 026375           66 TVYRALGENYNERVLPSIIHETLKAVVAQYNASQLITQRET-VSREIRKILTE--------RAANFNIALDDVSITSLTF  136 (239)
Q Consensus        66 ~~~~~~~~~~~~~~l~~~v~~~lr~~~~~~~~~ei~~~R~~-i~~~i~~~l~~--------~l~~~Gi~i~~v~i~~i~~  136 (239)
                      .+|   ...++-..+-..+.|.+|..+++.+++++..+-.. |.+.+.....+        .|..-|+.|++|.|.++.|
T Consensus       564 k~F---sv~DFvGd~Ck~iaSrIR~aVA~~~Fd~FHknsa~iiR~aVFg~~~e~~~~r~~l~F~~N~lvit~VDvqsvEp  640 (850)
T PTZ00491        564 KCF---SVPDFVGDACKTIASRVRAAVASEPFDEFHKNSAKIIRQAVFGSNDETGEVRDSLRFPANNLVITNVDVQSVEP  640 (850)
T ss_pred             hee---ccCchHHHHHHHHHHHHHHHHhcCCHHHHhccHHHHHHHHhccCcCCCCccccceEEccCCeEEEEEeeeeeee
Confidence            444   44333344668889999999999999999965444 44445442222        1356799999999999998


Q ss_pred             CH-HHHHHH
Q 026375          137 GK-EFTSAI  144 (239)
Q Consensus       137 p~-~~~~ai  144 (239)
                      -+ ...+++
T Consensus       641 vD~~tr~~L  649 (850)
T PTZ00491        641 VDERTRDSL  649 (850)
T ss_pred             cCHHHHHHH
Confidence            64 355555

>COG4260 Membrane protease subunit, stomatin/prohibitin family [Amino acid transport and metabolism]

Probab=98.25  E-value=1.8e-05  Score=66.18  Aligned_cols=128  Identities=11%  Similarity=0.096  Sum_probs=94.8

Q ss_pred             EEcccccceEEEEeeeee-Eeeee----cc---cccCceeEEEEEEEEEeeCCCCHHHHHHHhC-------ccccccccc
Q 026375           17 LMVPWFERPVIYDVRARP-HLVES----TS---GSRDLQMVKIGLRVLTRPVADKLPTVYRALG-------ENYNERVLP   81 (239)
Q Consensus        17 ~~~P~~~~v~~v~~~~~~-~~~~~----~~---~T~D~~~v~v~~~v~y~i~~~~~~~~~~~~~-------~~~~~~~l~   81 (239)
                      |..|+-+.|+.|+++.+. +.+-.    +.   .-..++++....+..|+|  .++..++..+.       ++..++.+-
T Consensus        88 f~sp~k~eVyfvntqe~~girwGT~qpin~~dn~~~g~l~lRa~Gtys~kv--tDpi~fi~~I~g~~dvy~v~di~~q~l  165 (345)
T COG4260          88 FESPFKQEVYFVNTQEIKGIRWGTPQPINYFDNFYNGELFLRAHGTYSIKV--TDPILFIQQIPGNRDVYTVDDINQQYL  165 (345)
T ss_pred             CCCcccceEEEEecceecceecCCCCCeecccccccceeEEeecceEEEEe--cCHHHHHHhccCCCceEEHHHHHHHHH
Confidence            446777889999998765 44421    11   123455667777777776  45555776653       234455566


Q ss_pred             hHHHHHHHHHHhhc--CHhHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEEeecccCCHHHHHHHHH
Q 026375           82 SIIHETLKAVVAQY--NASQLITQRETVSREIRKILTERAANFNIALDDVSITSLTFGKEFTSAIEA  146 (239)
Q Consensus        82 ~~v~~~lr~~~~~~--~~~ei~~~R~~i~~~i~~~l~~~l~~~Gi~i~~v~i~~i~~p~~~~~ai~~  146 (239)
                      +.+..+|...+.++  .+..+-.+.-+|+..+.+.|.+.+..+|..|+++.|-+|++|++.++.|..
T Consensus       166 s~~m~al~tai~q~G~~~~~ltan~~elsk~m~e~Ld~q~~q~Gm~v~sfqvaSisypde~Q~lin~  232 (345)
T COG4260         166 SEFMGALATAINQSGVRFSFLTANQMELSKYMAEVLDEQWTQYGMAVDSFQVASISYPDESQALINM  232 (345)
T ss_pred             HHHHHHHHHHHHhcCceehhhhhhHHHHHHHHHHHHhHHHHhhCceEeeEEEEEecCcHHHHHHHHh
Confidence            77888888888776  344555789999999999999999999999999999999999999999963

>PF12127 YdfA_immunity: SigmaW regulon antibacterial; InterPro: IPR022853 This entry represents the uncharacterised protein family UPF0365

Probab=97.85  E-value=0.00035  Score=58.35  Aligned_cols=108  Identities=10%  Similarity=0.203  Sum_probs=79.6

Q ss_pred             EEeeeeeEeeeec-ccccCceeEEEEEEEEEeeCCCCHHHHHHHhCccccccccchHHHHHHHHHHhhcCHhHHHHHHHH
Q 026375           28 YDVRARPHLVEST-SGSRDLQMVKIGLRVLTRPVADKLPTVYRALGENYNERVLPSIIHETLKAVVAQYNASQLITQRET  106 (239)
Q Consensus        28 v~~~~~~~~~~~~-~~T~D~~~v~v~~~v~y~i~~~~~~~~~~~~~~~~~~~~l~~~v~~~lr~~~~~~~~~ei~~~R~~  106 (239)
                      .++.+..++-|.- ...+||+.+.+.+.|..|-   +...+.   |..-.+..+...-+..+..+-|.-+..+++++-+.
T Consensus       120 ~SVnPkVI~~P~i~aVAkdGIql~~kArVTVRa---Ni~rLV---GGAgEeTIiARVGEgIVttiGSa~~hk~VLEnPd~  193 (316)
T PF12127_consen  120 TSVNPKVIDTPTIAAVAKDGIQLKVKARVTVRA---NIDRLV---GGAGEETIIARVGEGIVTTIGSAESHKEVLENPDS  193 (316)
T ss_pred             cccCCeeecCcchhhhhcCCeEEEEEEEEEEEe---cHHHhc---cCCCcHHHHHHHccceeeeeccchhHHHHhcCHHH
Confidence            3444444555543 6689999999998888884   343444   66666777777777777777788888999999999


Q ss_pred             HHHHHHHHHHHHHh-cCCeEEEEEEeecccCCHHHHHHH
Q 026375          107 VSREIRKILTERAA-NFNIALDDVSITSLTFGKEFTSAI  144 (239)
Q Consensus       107 i~~~i~~~l~~~l~-~~Gi~i~~v~i~~i~~p~~~~~ai  144 (239)
                      |++.+.+.   -|+ ..-++|.++.|-|++..+++-..+
T Consensus       194 ISk~VL~k---gLDagTAFeIlSIDIaDidVG~NIGA~L  229 (316)
T PF12127_consen  194 ISKTVLEK---GLDAGTAFEILSIDIADIDVGENIGAKL  229 (316)
T ss_pred             HHHHHHhh---CCCcCceeEEEEeeeeccccchhhchhh
Confidence            98887653   333 345999999999999998876666

Its function is not known. The proteins in this family are found in bacteria. They are about 330 amino acids in length and encoded by a gene located in an operon which confers immunity for the host species to a broad range of antibacterial compounds, unlike the specific immunity proteins that are linked to and co-regulated with their antibiotic-synthesis proteins.

>PRK13665 hypothetical protein; Provisional

Probab=97.50  E-value=0.0017  Score=54.11  Aligned_cols=108  Identities=12%  Similarity=0.200  Sum_probs=79.1

Q ss_pred             EEeeeeeEeeeec-ccccCceeEEEEEEEEEeeCCCCHHHHHHHhCccccccccchHHHHHHHHHHhhcCHhHHHHHHHH
Q 026375           28 YDVRARPHLVEST-SGSRDLQMVKIGLRVLTRPVADKLPTVYRALGENYNERVLPSIIHETLKAVVAQYNASQLITQRET  106 (239)
Q Consensus        28 v~~~~~~~~~~~~-~~T~D~~~v~v~~~v~y~i~~~~~~~~~~~~~~~~~~~~l~~~v~~~lr~~~~~~~~~ei~~~R~~  106 (239)
                      .++.+..++-|.- ...+||+.+.+.+.|..|   .+...+.   |..-.+..|...-++.+..+-|.-+-.+++++-+.
T Consensus       125 ~SVnPkVI~~P~i~aVAkdGIql~~kARVTVR---aNi~rLV---GGAgEeTIiARVGEgIVttIGSa~~hk~VLEnPd~  198 (316)
T PRK13665        125 MSVNPKVIETPFIAAVAKDGIEVKAKARVTVR---ANIDRLV---GGAGEETIIARVGEGIVSTIGSSESHKEVLENPDS  198 (316)
T ss_pred             cccCCeeecCCcchhhcccCeEEEEEEEEEee---hhHHHHh---CCCcceeeEeeecCceeecccCcchHHHHhcCHHH
Confidence            3444444554543 668999999998888887   3444444   66666777777777777777788888899999999


Q ss_pred             HHHHHHHHHHHHHhc-CCeEEEEEEeecccCCHHHHHHH
Q 026375          107 VSREIRKILTERAAN-FNIALDDVSITSLTFGKEFTSAI  144 (239)
Q Consensus       107 i~~~i~~~l~~~l~~-~Gi~i~~v~i~~i~~p~~~~~ai  144 (239)
                      |++.+.   .+-|+. .-++|.++.|-|++..+++-..+
T Consensus       199 ISk~VL---~kGLDagTAFeIlSIDIADvdVG~NIGA~L  234 (316)
T PRK13665        199 ISKTVL---SKGLDAGTAFEILSIDIADVDVGKNIGAKL  234 (316)
T ss_pred             HHHHHH---hccCCcCceeEEEEEeeeccccchhhchhh
Confidence            987664   334443 45999999999999999886666

>COG1580 FliL Flagellar basal body-associated protein [Cell motility and secretion]

Probab=96.38  E-value=0.085  Score=41.25  Aligned_cols=80  Identities=16%  Similarity=0.194  Sum_probs=63.5

Q ss_pred             ceeEEEEEEEEEeeCCCCHHHHHHHhCccccccccchHHHHHHHHHHhhcCHhHHHH--HHHHHHHHHHHHHHHHHhcCC
Q 026375           46 LQMVKIGLRVLTRPVADKLPTVYRALGENYNERVLPSIIHETLKAVVAQYNASQLIT--QRETVSREIRKILTERAANFN  123 (239)
Q Consensus        46 ~~~v~v~~~v~y~i~~~~~~~~~~~~~~~~~~~~l~~~v~~~lr~~~~~~~~~ei~~--~R~~i~~~i~~~l~~~l~~~G  123 (239)
                      +-...+.+.+.|++.....   ...+..      =.+.+++.+...+++.|.+|+.+  ++++|..++++.++..|..-+
T Consensus        76 ~~~~~v~i~i~l~~~n~~~---~~el~~------~~p~vrd~li~lfsskt~~eL~t~~Gke~Lk~ei~~~in~~L~~g~  146 (159)
T COG1580          76 PKDRYVKIAITLEVANKAL---LEELEE------KKPEVRDALLMLFSSKTAAELSTPEGKEKLKAEIKDRINTILKEGQ  146 (159)
T ss_pred             CCcEEEEEEEEEeeCCHHH---HHHHHH------hhHHHHHHHHHHHHhCCHHHhcCchhHHHHHHHHHHHHHHHHhcCC
Confidence            5556788899999754433   222211      13789999999999999999995  899999999999999999866


Q ss_pred             eEEEEEEeeccc
Q 026375          124 IALDDVSITSLT  135 (239)
Q Consensus       124 i~i~~v~i~~i~  135 (239)
                       .|.+|.++++.
T Consensus       147 -~V~dV~fT~fi  157 (159)
T COG1580         147 -VVKDVLFTNFI  157 (159)
T ss_pred             -eeEEEeeehhh
Confidence             88898888764

>PF11978 MVP_shoulder: Shoulder domain; InterPro: IPR021870 This domain is found in the Major Vault Protein and has been called the shoulder domain []

Probab=95.12  E-value=0.11  Score=38.01  Aligned_cols=97  Identities=12%  Similarity=0.036  Sum_probs=61.9

Q ss_pred             ccccCceeEEEEEEEEEeeCCC--CHHHHHHHhCccccccccchHHHHHHHHHHhhcCHhHHHHHHHHHHHHHHHHHHH-
Q 026375           41 SGSRDLQMVKIGLRVLTRPVAD--KLPTVYRALGENYNERVLPSIIHETLKAVVAQYNASQLITQRETVSREIRKILTE-  117 (239)
Q Consensus        41 ~~T~D~~~v~v~~~v~y~i~~~--~~~~~~~~~~~~~~~~~l~~~v~~~lr~~~~~~~~~ei~~~R~~i~~~i~~~l~~-  117 (239)
                      +-|+|-..+.+.++..|+.+.+  +...--.-|.....-..+-..+.|.+|..+++.+++++..+-..|-...-=..++ 
T Consensus        11 VET~DhArL~L~LsYnw~F~v~~~~~~~~~k~F~VpDFVGd~Ck~iaSRIR~aVa~~~Fd~FHknSa~iiR~aVFg~~~~   90 (118)
T PF11978_consen   11 VETADHARLQLQLSYNWHFDVDRKDPEDAAKLFSVPDFVGDACKAIASRIRGAVASVTFDDFHKNSARIIRQAVFGFDEN   90 (118)
T ss_dssp             EE-TT-EEEEEEEEEEEEE--TTTHHHHHHHTTSSTTHHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHSTS---
T ss_pred             EeecccceeeEEEEEEEEEecCCCChhHHHHhcCCcchHHHHHHHHHHHHHHHHhcCcHHHHcccHHHHHHHHhcCCCCC
Confidence            4499999999999999987552  2222223335433334466788899999999999999997655544332111111 


Q ss_pred             -------HHhcCCeEEEEEEeecccCC
Q 026375          118 -------RAANFNIALDDVSITSLTFG  137 (239)
Q Consensus       118 -------~l~~~Gi~i~~v~i~~i~~p  137 (239)
                             .+..-|+.|.+|.|+++.|-
T Consensus        91 ~~~r~~~~F~~N~LvIt~vDvqsvEpv  117 (118)
T PF11978_consen   91 GEVRDGLRFPANNLVITSVDVQSVEPV  117 (118)
T ss_dssp             E--SS-EEETTTTEEEEEEEEEEEEES
T ss_pred             CCccceeEEcCCCeEEEEEeeeEeccC
Confidence                   12456899999999998763

This family includes two bacterial proteins A6FXE2 from SWISSPROT and A1ZGE7 from SWISSPROT. This suggests that some bacteria may possess vault particles. ; PDB: 2ZUO_G 2QZV_B 2ZV5_c 2ZV4_Y.

>COG4864 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=93.66  E-value=0.72  Score=37.80  Aligned_cols=94  Identities=12%  Similarity=0.224  Sum_probs=61.4

Q ss_pred             cccCceeEEEEEEEEEeeCCCCHHHHHHHhCccccccccchHHHHHHHHHHhhcCHhHHHHHHHHHHHHHHHHHHHHHh-
Q 026375           42 GSRDLQMVKIGLRVLTRPVADKLPTVYRALGENYNERVLPSIIHETLKAVVAQYNASQLITQRETVSREIRKILTERAA-  120 (239)
Q Consensus        42 ~T~D~~~v~v~~~v~y~i~~~~~~~~~~~~~~~~~~~~l~~~v~~~lr~~~~~~~~~ei~~~R~~i~~~i~~~l~~~l~-  120 (239)
                      ..-||+.+.....+..|   .+...+.   |..-.+..|...-+..+..+-++..-.+++.+-+.|++.+.+   +-|. 
T Consensus       139 vam~gievkakaritvr---ani~rlv---ggageetviarvgegivstigss~~h~~vlenpd~isktvl~---kgld~  209 (328)
T COG4864         139 VAMNGIEVKAKARITVR---ANIERLV---GGAGEETVIARVGEGIVSTIGSSDEHTKVLENPDSISKTVLE---KGLDS  209 (328)
T ss_pred             eeccceEEEEEEEEEeh---hhHHHHh---CCCCchhhhhhhccceeeccCCCcchhhHhcCccHHHHHHHH---ccCCC
Confidence            35688777766666555   3333444   555555656555555555555666777888888888887654   2232 


Q ss_pred             cCCeEEEEEEeecccCCHHHHHHH
Q 026375          121 NFNIALDDVSITSLTFGKEFTSAI  144 (239)
Q Consensus       121 ~~Gi~i~~v~i~~i~~p~~~~~ai  144 (239)
                      ...++|.++.|-+++..+++-.-+
T Consensus       210 gtafeilsidiadvdigkniga~l  233 (328)
T COG4864         210 GTAFEILSIDIADVDIGKNIGAKL  233 (328)
T ss_pred             CceeEEEEeeeecccccccccccc
Confidence            235899999999999988765544

>cd03405 Band_7_HflC Band_7_HflC: The band 7 domain of flotillin (reggie) like proteins

Probab=93.29  E-value=0.7  Score=38.37  Aligned_cols=79  Identities=13%  Similarity=0.197  Sum_probs=46.8

Q ss_pred             HHHHHHHHHhcCCeEEEEEEeecccCCH-HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 026375          111 IRKILTERAANFNIALDDVSITSLTFGK-EFTSAIEAKQVAAQEAERAK-YIVEKAEQDKRSAIIRAQGEATSAQLIGQA  188 (239)
Q Consensus       111 i~~~l~~~l~~~Gi~i~~v~i~~i~~p~-~~~~ai~~k~~A~q~ae~~~-~~~~~Aeaea~a~~~~Aegea~a~~~~a~a  188 (239)
                      +.+.+.+.+.+. +.=..+.|.++.+-+ .+-+.+.........+++.+ .....|++++++..+.|++++++..+.|++
T Consensus       121 i~~~i~~~l~~~-l~~~Gi~i~~v~i~~i~~p~~i~~ai~~~~~ae~~~~a~~~~ae~~~~a~~~~aea~~~~~~~~Aea  199 (242)
T cd03405         121 LMEEIRRAVAEE-AKELGIEVVDVRIKRIDLPEEVSESVYRRMRAERERIAAEFRAEGEEEAERIRADADRERTVILAEA  199 (242)
T ss_pred             HHHHHHHHHHHH-HHccCcEEEEEEEEeccCCHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            444444444432 333467777777653 34455544444445566654 445567777777777777777777777776


Q ss_pred             hh
Q 026375          189 IA  190 (239)
Q Consensus       189 ~~  190 (239)
                      .+
T Consensus       200 ~a  201 (242)
T cd03405         200 YR  201 (242)
T ss_pred             HH
Confidence            63

This group includes proteins similar to prokaryotic HlfC (High frequency of lysogenization C). Although many members of the band 7 family are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflC is an integral membrane protein which may localize to the plasma membrane. HflC associates with another band 7 family member (HflK) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during la

>PRK12785 fliL flagellar basal body-associated protein FliL; Reviewed

Probab=93.25  E-value=2.5  Score=33.23  Aligned_cols=52  Identities=10%  Similarity=0.109  Sum_probs=44.3

Q ss_pred             chHHHHHHHHHHhhcCHhHHHH--HHHHHHHHHHHHHHHHHhcCCeEEEEEEeecc
Q 026375           81 PSIIHETLKAVVAQYNASQLIT--QRETVSREIRKILTERAANFNIALDDVSITSL  134 (239)
Q Consensus        81 ~~~v~~~lr~~~~~~~~~ei~~--~R~~i~~~i~~~l~~~l~~~Gi~i~~v~i~~i  134 (239)
                      .+.+++.+-..+++.+.+|+.+  ++..|.+++.+.++..+.+-  .|.+|.++++
T Consensus       110 ~p~Ird~i~~~Ls~~~~~~L~~~~Gk~~Lr~ei~~~in~~l~~~--~V~~VlFt~F  163 (166)
T PRK12785        110 MPRVTDAFQTYLRELRPSDLNGSAGLFRLKEELLRRVNVALAPA--QVNAVLFKEV  163 (166)
T ss_pred             chHHHHHHHHHHHhCCHHHhcChHHHHHHHHHHHHHHHhhcCCC--ceeEEEEEee
Confidence            3678889999999999999984  79999999999999988763  3888888765

>PF03748 FliL: Flagellar basal body-associated protein FliL; InterPro: IPR005503 This FliL protein controls the rotational direction of the flagella during chemotaxis []

Probab=92.55  E-value=2.7  Score=29.62  Aligned_cols=52  Identities=15%  Similarity=0.234  Sum_probs=44.3

Q ss_pred             chHHHHHHHHHHhhcCHhHHH--HHHHHHHHHHHHHHHHHHhcCCeEEEEEEeecc
Q 026375           81 PSIIHETLKAVVAQYNASQLI--TQRETVSREIRKILTERAANFNIALDDVSITSL  134 (239)
Q Consensus        81 ~~~v~~~lr~~~~~~~~~ei~--~~R~~i~~~i~~~l~~~l~~~Gi~i~~v~i~~i  134 (239)
                      .+.+++.+-..+++++.+++.  .++..|.+++.+.+++.+.+-  .|.+|.++++
T Consensus        43 ~~~ird~ii~~l~~~~~~~l~~~~g~~~Lk~~l~~~in~~l~~~--~V~~V~ft~f   96 (99)
T PF03748_consen   43 MPRIRDAIISYLSSKTAEDLSGPEGKERLKDELKDRINKILGKG--KVKDVYFTDF   96 (99)
T ss_pred             cHHHHHHHHHHHHcCCHHHhcChhhHHHHHHHHHHHHHHhhccC--cEEEEEEEEE
Confidence            468999999999999999999  589999999999999998553  3778877764

FliL is a cytoplasmic membrane protein associated with the basal body [].; GO: 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009425 bacterial-type flagellum basal body

>PRK07718 fliL flagellar basal body-associated protein FliL; Reviewed

Probab=92.49  E-value=1.8  Score=33.08  Aligned_cols=77  Identities=14%  Similarity=0.233  Sum_probs=56.0

Q ss_pred             CceeEEEEEEEEEeeCCCCHHHHHHHhCccccccccchHHHHHHHHHHhhcCHhHHHH--HHHHHHHHHHHHHHHHHhcC
Q 026375           45 DLQMVKIGLRVLTRPVADKLPTVYRALGENYNERVLPSIIHETLKAVVAQYNASQLIT--QRETVSREIRKILTERAANF  122 (239)
Q Consensus        45 D~~~v~v~~~v~y~i~~~~~~~~~~~~~~~~~~~~l~~~v~~~lr~~~~~~~~~ei~~--~R~~i~~~i~~~l~~~l~~~  122 (239)
                      |+-.+.+++++.+.  ......-..        . -.+.+++.+-..+++++.+|+.+  ++++|.+++.+.++..+.+ 
T Consensus        61 ~~~ylk~~i~l~~~--~~~~~~el~--------~-~~p~Ird~ii~~L~~~~~~~l~~~~G~~~Lr~el~~~in~~l~~-  128 (142)
T PRK07718         61 SGNFIRIQFKIETD--SKKAKEELE--------K-RDFQVKNIIIEELADMNAEDFKGKKGLEALKEQLKEKINNLMQE-  128 (142)
T ss_pred             CCCEEEEEEEEEEC--CHHHHHHHH--------h-cChhhHHHHHHHHHcCCHHHhcChhHHHHHHHHHHHHHHHhhcc-
Confidence            35566777776654  232221111        1 14678999999999999999994  8999999999999998876 


Q ss_pred             CeEEEEEEeecc
Q 026375          123 NIALDDVSITSL  134 (239)
Q Consensus       123 Gi~i~~v~i~~i  134 (239)
                      | .|.+|.++++
T Consensus       129 g-~V~~Vyft~f  139 (142)
T PRK07718        129 G-KVEKVYITSF  139 (142)
T ss_pred             C-ceEEEEEEee
Confidence            4 5888887764

>cd03404 Band_7_HflK Band_7_HflK: The band 7 domain of flotillin (reggie) like proteins

Probab=92.37  E-value=1.4  Score=37.26  Aligned_cols=84  Identities=11%  Similarity=0.134  Sum_probs=50.9

Q ss_pred             EEEeecccCCH-HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhcChhhHHHHHHHHHH
Q 026375          128 DVSITSLTFGK-EFTSAIEAKQVAAQEAERA-KYIVEKAEQDKRSAIIRAQGEATSAQLIGQAIANNPAFITLRKIEAAR  205 (239)
Q Consensus       128 ~v~i~~i~~p~-~~~~ai~~k~~A~q~ae~~-~~~~~~Aeaea~a~~~~Aegea~a~~~~a~a~~~~p~~~~~~~le~~~  205 (239)
                      .+.|.++.+-+ .+-..+.....+.+.+++. +.....|++++++.+.+|+|+|++..+.+++.+.....-..-..+.++
T Consensus       161 Gi~v~~v~i~~i~~p~~i~~a~~~~~~A~q~~~~~~~eae~~a~~~~~~A~~ea~~~~~~A~a~~~~~~~~ae~~a~~~~  240 (266)
T cd03404         161 GIEIVGVNLQDADPPEEVQDAFDDVNKARQDRERLINEAEAYANEVVPKARGEAARIIQEAEAYKEEVIAEAQGEAARFE  240 (266)
T ss_pred             CeEEEEEEEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            67788887754 3455565444444444433 344556777777888999999999999999886544433333333333


Q ss_pred             HHHHHh
Q 026375          206 EIAQTI  211 (239)
Q Consensus       206 ~~a~~~  211 (239)
                      .++..+
T Consensus       241 ~~~~a~  246 (266)
T cd03404         241 SLLAEY  246 (266)
T ss_pred             HHHHHH
Confidence            333333

This group includes proteins similar to prokaryotic HlfK (High frequency of lysogenization K). Although many members of the band 7 family are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflK is an integral membrane protein which may localize to the plasma membrane. HflK associates with another band 7 family member (HflC) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during la

>PRK11029 FtsH protease regulator HflC; Provisional

Probab=91.07  E-value=2  Score=37.78  Aligned_cols=63  Identities=10%  Similarity=0.206  Sum_probs=46.2

Q ss_pred             EEEeecccCCH-HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhHHHHHHHHHHHhh
Q 026375          128 DVSITSLTFGK-EFTSAIEAKQVAAQEAERAKY-IVEKAEQDKRSAIIRAQGEATSAQLIGQAIA  190 (239)
Q Consensus       128 ~v~i~~i~~p~-~~~~ai~~k~~A~q~ae~~~~-~~~~Aeaea~a~~~~Aegea~a~~~~a~a~~  190 (239)
                      .+.|.++.+-+ .+=..+.+..-.+..++|.+. ....|++++++..++|+|+.++.+++++|.+
T Consensus       202 GI~V~~V~i~~i~~P~~v~~ai~~~~~Aere~~a~~~~aege~~a~~~~a~A~~e~~~~~AeA~~  266 (334)
T PRK11029        202 GIEVVDVRIKQINLPTEVSDAIYNRMRAEREAVARRHRSQGQEEAEKLRATADYEVTRTLAEAER  266 (334)
T ss_pred             CcEEEEEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence            46777777754 455556555556666777653 4678999999999999999888888888864

>PRK08455 fliL flagellar basal body-associated protein FliL; Reviewed

Probab=91.06  E-value=5.8  Score=31.74  Aligned_cols=52  Identities=15%  Similarity=0.227  Sum_probs=44.9

Q ss_pred             chHHHHHHHHHHhhcCHhHHH--HHHHHHHHHHHHHHHHHHhcCCeEEEEEEeecc
Q 026375           81 PSIIHETLKAVVAQYNASQLI--TQRETVSREIRKILTERAANFNIALDDVSITSL  134 (239)
Q Consensus        81 ~~~v~~~lr~~~~~~~~~ei~--~~R~~i~~~i~~~l~~~l~~~Gi~i~~v~i~~i  134 (239)
                      .+.+++.+-..+++.+.+|+.  .+++.|.+++.+.++..+.+-  .|.+|.++++
T Consensus       126 ~p~IRD~ii~~Ls~kt~~dL~t~~Gk~~Lk~ei~~~iN~~L~~g--~V~~VyFT~F  179 (182)
T PRK08455        126 DPVIRDIIIRILSSKTVEEVSTNKGKERLKDEIVGKLNEFLIDG--FIKNVFFTDF  179 (182)
T ss_pred             hhHHHHHHHHHHHcCCHHHhcCHHHHHHHHHHHHHHHHHHhccC--ceeEEEeEee
Confidence            467999999999999999999  489999999999999999763  5778887765

>PRK05697 flagellar basal body-associated protein FliL-like protein; Validated

Probab=90.26  E-value=6.7  Score=29.86  Aligned_cols=53  Identities=21%  Similarity=0.237  Sum_probs=45.9

Q ss_pred             hHHHHHHHHHHhhcCHhHHH--HHHHHHHHHHHHHHHHHHhcC-C-eEEEEEEeecc
Q 026375           82 SIIHETLKAVVAQYNASQLI--TQRETVSREIRKILTERAANF-N-IALDDVSITSL  134 (239)
Q Consensus        82 ~~v~~~lr~~~~~~~~~ei~--~~R~~i~~~i~~~l~~~l~~~-G-i~i~~v~i~~i  134 (239)
                      +.+++.+-..+++.+.+|+.  .+|++|.+++.+.++..+.+- | -.|++|.++++
T Consensus        78 P~IRd~ii~lLs~~t~~eL~t~eGke~Lr~eil~~in~~L~~~~g~~~V~~VlFT~F  134 (137)
T PRK05697         78 PLIRNALVELLGQQTEDKVKSLTGREEIRQECLKQVNELLEQETGKPLVVDLLFTKY  134 (137)
T ss_pred             HHHHHHHHHHHHcCCHHHhcCHHHHHHHHHHHHHHHHHHHhhccCCCceeEEeeeee
Confidence            78999999999999999998  489999999999999999753 3 35888888765

>PRK06654 fliL flagellar basal body-associated protein FliL; Reviewed

Probab=90.16  E-value=5.7  Score=31.70  Aligned_cols=81  Identities=14%  Similarity=0.215  Sum_probs=57.0

Q ss_pred             ccCc--eeEEEEEEEEEeeCCCCHHHHHHHhCccccccccchHHHHHHHHHHhhcCHhHHHHHHHHHHHHHHHHHHHHHh
Q 026375           43 SRDL--QMVKIGLRVLTRPVADKLPTVYRALGENYNERVLPSIIHETLKAVVAQYNASQLITQRETVSREIRKILTERAA  120 (239)
Q Consensus        43 T~D~--~~v~v~~~v~y~i~~~~~~~~~~~~~~~~~~~~l~~~v~~~lr~~~~~~~~~ei~~~R~~i~~~i~~~l~~~l~  120 (239)
                      ++|.  ....+.+++.|..+...   +...+     +. =.+.+++.+...+++++.+|+. ++.+|.+++.+.++..|.
T Consensus        95 LaD~~~~r~~vki~l~~e~~d~~---l~~EL-----~~-r~pqIRD~Ii~~LssKt~~eL~-Gk~~LKeEI~~rIN~iL~  164 (181)
T PRK06654         95 TADTPPKTFVVKLALGYAENNKN---ILNEL-----GR-RKVRLKDIIREYFSQKTGQELK-NESQIKAEIKARINSILR  164 (181)
T ss_pred             cCCCCCceEEEEEEEEEEcCCHH---HHHHH-----Hh-ccHHHHHHHHHHHHhCCHHHHc-CHHHHHHHHHHHHHHhcC
Confidence            4444  33446777777643222   22222     11 2478999999999999999999 899999999999999888


Q ss_pred             cCCeEEEEEEeeccc
Q 026375          121 NFNIALDDVSITSLT  135 (239)
Q Consensus       121 ~~Gi~i~~v~i~~i~  135 (239)
                      +-  .|.+|.+++..
T Consensus       165 ~G--kV~~VYFTeFv  177 (181)
T PRK06654        165 NG--EIKDIAFTQID  177 (181)
T ss_pred             CC--ceEEEEEEEEE
Confidence            63  36677766643

>PRK07021 fliL flagellar basal body-associated protein FliL; Reviewed

Probab=89.75  E-value=8.2  Score=30.15  Aligned_cols=54  Identities=19%  Similarity=0.282  Sum_probs=45.4

Q ss_pred             chHHHHHHHHHHhhcCHhHHHH--HHHHHHHHHHHHHHHHHhcCC--eEEEEEEeecc
Q 026375           81 PSIIHETLKAVVAQYNASQLIT--QRETVSREIRKILTERAANFN--IALDDVSITSL  134 (239)
Q Consensus        81 ~~~v~~~lr~~~~~~~~~ei~~--~R~~i~~~i~~~l~~~l~~~G--i~i~~v~i~~i  134 (239)
                      .+.+++.+-..++..+.+|+.+  ++.+|.+++.+.++..+..-+  -.|.+|.++++
T Consensus       102 ~p~IRd~ii~~Ls~k~~~~L~~~eGk~~Lk~ei~~~in~~l~~~~~~~~V~~VlFt~f  159 (162)
T PRK07021        102 LPEVRSRLLLLLSRKHAAELATEEGKQKLAAEIKQTLSQPLVPGQPPQVVTDVLFTAF  159 (162)
T ss_pred             CHHHHHHHHHHHhcCCHHHhcCHHHHHHHHHHHHHHHHHHHhccCCCCceeEEeeeec
Confidence            3678999999999999999984  899999999999999987532  46888888765

>TIGR01932 hflC HflC protein

Probab=89.57  E-value=3.2  Score=36.23  Aligned_cols=38  Identities=13%  Similarity=0.255  Sum_probs=28.2

Q ss_pred             HHHHH-HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhh
Q 026375          153 EAERA-KYIVEKAEQDKRSAIIRAQGEATSAQLIGQAIA  190 (239)
Q Consensus       153 ~ae~~-~~~~~~Aeaea~a~~~~Aegea~a~~~~a~a~~  190 (239)
                      .++|. .....++++++++..+.|++++++.+++++|.+
T Consensus       218 ~aere~~a~~~r~ege~~a~~i~a~A~~e~~~~~aeA~a  256 (317)
T TIGR01932       218 RSEREQIARMHRSQGEEKAEEILGKAEYEVRKILSEAYR  256 (317)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34443 334667888888888889999888888888864

HflK and HflC are paralogs encoded by tandem genes in Proteobacteria, spirochetes, and some other bacterial lineages. The HflKC complex is anchored in the membrane and exposed to the periplasm. The complex is not active as a protease, but rather binds to and appears to modulate the ATP-dependent protease FtsH. The overall function of HflKC is not fully described.//Regulation of FtsH protease appears to be negative (PubMed:8947034, PubMed:96367)

>cd03407 Band_7_4 A subgroup of the band 7 domain of flotillin (reggie) like proteins

Probab=86.87  E-value=5.6  Score=33.59  Aligned_cols=65  Identities=22%  Similarity=0.249  Sum_probs=43.5

Q ss_pred             EEEEeecccCCH-HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhc
Q 026375          127 DDVSITSLTFGK-EFTSAIEAKQVAAQEAERAK-YIVEKAEQDKRSAIIRAQGEATSAQLIGQAIAN  191 (239)
Q Consensus       127 ~~v~i~~i~~p~-~~~~ai~~k~~A~q~ae~~~-~~~~~Aeaea~a~~~~Aegea~a~~~~a~a~~~  191 (239)
                      -.+.|.++.+-+ ..-+.+.........|++.+ ..+..|++++.+.+.+|+|++++..+.|+++++
T Consensus       127 ~GI~V~~v~I~~i~~p~~v~~A~~~~~~A~~~~~a~~~~Aea~~~~~i~~A~~ea~a~~~~Aeg~a~  193 (262)
T cd03407         127 YGFEIVATLITDIDPDAEVKRAMNEINAAQRQRVAAVHKAEAEKIKDIKAAEADAEAKRLQGVGAAE  193 (262)
T ss_pred             cCcEEEEEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence            356666665543 23444443444444555543 456778888889999999999999999988744

This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H

>PLN03086 PRLI-interacting factor K; Provisional

Probab=83.72  E-value=1.5  Score=41.27  Aligned_cols=33  Identities=15%  Similarity=0.172  Sum_probs=18.9

Q ss_pred             HHHhhcChhhHHHHHHHHHHHHHHHhcCCCCEEEEcCC
Q 026375          186 GQAIANNPAFITLRKIEAAREIAQTIAHSANKVFLNSD  223 (239)
Q Consensus       186 a~a~~~~p~~~~~~~le~~~~~a~~~~~~~~~i~l~~~  223 (239)
                      .+.+..+..+.-++.+++....     +++++|+||++
T Consensus        67 ~~~~~~~~g~~~~~~~~~~~~~-----~~GdKI~LPpS   99 (567)
T PLN03086         67 QESLQAGRGIVFSRIFEAVSFQ-----GNGDKIKLPPS   99 (567)
T ss_pred             HHHHHcCCCeEEEEEeeccccC-----CCCCeEEcCHH
Confidence            3333334333333556666542     56789999976

>PRK05696 fliL flagellar basal body-associated protein FliL; Reviewed

Probab=81.34  E-value=24  Score=27.71  Aligned_cols=54  Identities=17%  Similarity=0.211  Sum_probs=44.8

Q ss_pred             chHHHHHHHHHHhhcCHhHHHH--HHHHHHHHHHHHHHHHHhcC-C-eEEEEEEeecc
Q 026375           81 PSIIHETLKAVVAQYNASQLIT--QRETVSREIRKILTERAANF-N-IALDDVSITSL  134 (239)
Q Consensus        81 ~~~v~~~lr~~~~~~~~~ei~~--~R~~i~~~i~~~l~~~l~~~-G-i~i~~v~i~~i  134 (239)
                      .+.+++.+-..+++.+.+|+.+  +++.|.+++...++..++.. | -.|.+|.++++
T Consensus       110 ~p~IRd~i~~~Ls~k~~~~L~~~~gk~~Lr~el~~~i~~~l~~~~g~~~V~~VlFt~f  167 (170)
T PRK05696        110 IPLIESALLMTFSSATVDQLSTPAGKEELRQKALASVQETLQKVTGKPVVEKVLFTGF  167 (170)
T ss_pred             hHHHHHHHHHHHhcCCHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCceeEEeeeec
Confidence            3688999999999999999984  79999999999998888653 3 36888888765

>cd03403 Band_7_stomatin_like Band_7_stomatin_like: A subgroup of the band 7 domain of flotillin (reggie) like proteins similar to stomatin and podicin (two lipid raft-associated integral membrane proteins)

Probab=81.23  E-value=5.4  Score=32.31  Aligned_cols=75  Identities=12%  Similarity=0.176  Sum_probs=48.7

Q ss_pred             HHHHHHHHHHHH-HhcCCeEEEEEEeecccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH-H
Q 026375          107 VSREIRKILTER-AANFNIALDDVSITSLTFGKEFTSAIEAKQVAAQEAERAKYIVEKAEQDKRSAIIRAQGEATSAQ-L  184 (239)
Q Consensus       107 i~~~i~~~l~~~-l~~~Gi~i~~v~i~~i~~p~~~~~ai~~k~~A~q~ae~~~~~~~~Aeaea~a~~~~Aegea~a~~-~  184 (239)
                      +.+.+...+... +.=..+.|.++.+.+ .+-+.+.+.+.+++.++.       .+..|++++++.++.|+|++++.. .
T Consensus       117 i~~~l~~~l~~~Gi~v~~v~i~~i~~p~-~~~~ai~~~~~A~~~~~a-------~i~~A~ge~~a~~~~aea~~~~~~~~  188 (215)
T cd03403         117 LVEILDEATDPWGVKVERVEIKDIILPQ-EIQEAMAKQAEAEREKRA-------KIIEAEGERQAAILLAEAAKQAAINP  188 (215)
T ss_pred             HHHHHHHHHhccCeEEEEEEEeeecCCH-HHHHHHHHHHHHHHHHHH-------HHHHhHHHHHHHHHHHHHHHHHccCH
Confidence            334444444432 233358899999865 566778888877775432       366788899999999988887654 4


Q ss_pred             HHHHh
Q 026375          185 IGQAI  189 (239)
Q Consensus       185 ~a~a~  189 (239)
                      .+.++
T Consensus       189 ~~~~~  193 (215)
T cd03403         189 AALQL  193 (215)
T ss_pred             HHHHH
Confidence            33333

Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Stomatin is widely expressed and, highly expressed in red blood cells. It localizes predominantly to the plasma membrane and to intracellular vesicles of the endocytic pathway, where it is present in higher order homo-oligomeric complexes (of between 9 and 12 monomers). Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and, is implicated in trafficking of Glut1 glucose transporters. Prohibitin is a mitochondrial inner-membrane protein hypothesized to act as a chaperone for the stabilization of mitochondrial proteins. Podicin local

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	239
3bk6_A	188	PH stomatin; archaea, trimer, coiled- coil, flotil	2e-09
1win_A	143	Flotillin 2; BAND 7 domain, structural genomics, r	2e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-04

>3bk6_A PH stomatin; archaea, trimer, coiled- coil, flotillin, SPFH, membrane fusion, trafficking, transmembrane, membrane protein; 3.20A {Pyrococcus horikoshii} Length = 188

 Score = 54.1 bits (131), Expect = 2e-09
 Identities = 28/125 (22%), Positives = 66/125 (52%), Gaps = 17/125 (13%)

Query: 87  TLKAVVAQYNASQLITQRETVSREIRKILTERAANFNIALDDVSITSLTFGKEFTSAIEA 146
           TL++V+ Q +  +L+++R+ ++ ++++I+ E    + I +  V I  +        A+  
Sbjct: 65  TLRSVIGQAHLDELLSERDKLNMQLQRIIDEATDPWGIKVTAVEIKDVELPAGMQKAM-- 122

Query: 147 KQVAAQEAERAKYIVEKAEQDKRSAIIRAQGEATSAQLIGQA---IANNPAFITLRKIEA 203
               A++AE        AE+++R+ I  A+ E  +A+ + +A   I+ +P  + LR ++ 
Sbjct: 123 ----ARQAE--------AERERRARITLAEAERQAAEKLREAAEIISEHPMALQLRTLQT 170

Query: 204 AREIA 208
             ++A
Sbjct: 171 ISDVA 175

>1win_A Flotillin 2; BAND 7 domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, cell adhesion; NMR {Mus musculus} SCOP: d.43.2.1 Length = 143

 Score = 39.1 bits (91), Expect = 2e-04
 Identities = 9/78 (11%), Positives = 32/78 (41%)

Query: 77  ERVLPSIIHETLKAVVAQYNASQLITQRETVSREIRKILTERAANFNIALDDVSITSLTF 136
           + V+   +   L++++      Q+   R+  ++ +R++         I +   +I  +  
Sbjct: 65  KNVVLQTLEGHLRSILGTLTVEQIYQDRDQFAKLVREVAAPDVGRMGIEILSFTIKDVYD 124

Query: 137 GKEFTSAIEAKQVAAQEA 154
             ++ S++   Q +   +
Sbjct: 125 KVDYLSSLGKTQTSGPSS 142

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 39.8 bits (92), Expect = 6e-04
 Identities = 44/251 (17%), Positives = 80/251 (31%), Gaps = 77/251 (30%)

Query: 2   KNLDLFACVYPEGTH-----LMVPWFERPVIYDVR------ARPHLV-----ESTSGSRD 45
           K  D  + V+P   H     L + WF+     DV        +  LV     EST     
Sbjct: 373 KMFDRLS-VFPPSAHIPTILLSLIWFDVIK-SDVMVVVNKLHKYSLVEKQPKESTISIPS 430

Query: 46  LQMVKIGLRVLTRPVADKLPTVYRALGENYN-ERVLPSIIHETLKAVVAQYNASQLITQR 104
           + +         +   +    ++R++ ++YN  +   S   + +   + QY  S +    
Sbjct: 431 IYL-------ELKVKLENEYALHRSIVDHYNIPKTFDS--DDLIPPYLDQYFYSHI---- 477

Query: 105 ETVSREIRKI-LTERAANF-NIALDDVSITSLTFGKEFTSAIEAKQVAAQEAERA----- 157
                 ++ I   ER   F  + LD        F       +E K      A  A     
Sbjct: 478 ---GHHLKNIEHPERMTLFRMVFLD------FRF-------LEQKIRHDSTAWNASGSIL 521

Query: 158 ----------KYIVEKAEQDKR--SAIIR--AQGEAT-----SAQLIGQAIANNPAFITL 198
                      YI +   + +R  +AI+    + E          L+  A+      I  
Sbjct: 522 NTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIF- 580

Query: 199 RKIEAAREIAQ 209
              EA +++ +
Sbjct: 581 --EEAHKQVQR 589

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 39.5 bits (91), Expect = 7e-04
 Identities = 24/208 (11%), Positives = 61/208 (29%), Gaps = 54/208 (25%)

Query: 49  VKIGLRVLTRPVADKLPTVYRALGENYNERVLPSIIHETLKAVVAQYNASQLITQRETVS 108
           + +        V + L  +   +  N+  R   S               S +  +  ++ 
Sbjct: 187 LNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHS---------------SNIKLRIHSIQ 231

Query: 109 REIRKILTERAANFNIAL---DDVS---------------ITS--------LTFGKEFTS 142
            E+R++L  +   +   L    +V                +T+        L+       
Sbjct: 232 AELRRLLKSK--PYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHI 289

Query: 143 AIEAKQVAAQEAER----AKYIVEKAEQDKRSAIIRAQGEATSAQLIGQAIANNPA-FIT 197
           +++   +     E      KY+  + +   R  +           +I ++I +  A +  
Sbjct: 290 SLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVL---TTNPRRLSIIAESIRDGLATWDN 346

Query: 198 LRKIEAAREIAQTIAHSANKVFLNSDDL 225
            + +   + +   I  S N   L   + 
Sbjct: 347 WKHVNCDK-LTTIIESSLNV--LEPAEY 371

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	239
3bk6_A	188	PH stomatin; archaea, trimer, coiled- coil, flotil	99.97
4fvg_A	133	Stomatin; mixed alpha-beta fold, membrane scaffold	99.93
1win_A	143	Flotillin 2; BAND 7 domain, structural genomics, r	99.87
2rpb_A	113	Hypothetical membrane protein; SPFH domain; NMR {P	99.78
2zuo_A	861	MVP, major vault protein; repeat domains, protein-	98.52

>3bk6_A PH stomatin; archaea, trimer, coiled- coil, flotillin, SPFH, membrane fusion, trafficking, transmembrane, membrane protein; 3.20A {Pyrococcus horikoshii}

Probab=99.97  E-value=3.1e-31  Score=213.01  Aligned_cols=171  Identities=22%  Similarity=0.345  Sum_probs=146.5

Q ss_pred             cccceEEEEeeeeeEeeeec-ccccCceeEEEEEEEEEeeCCCCHHHHHHHhCccccccccchHHHHHHHHHHhhcCHhH
Q 026375           21 WFERPVIYDVRARPHLVEST-SGSRDLQMVKIGLRVLTRPVADKLPTVYRALGENYNERVLPSIIHETLKAVVAQYNASQ   99 (239)
Q Consensus        21 ~~~~v~~v~~~~~~~~~~~~-~~T~D~~~v~v~~~v~y~i~~~~~~~~~~~~~~~~~~~~l~~~v~~~lr~~~~~~~~~e   99 (239)
                      |++++..||++.++++++.+ +.|+||++|++++++.|||.  ++..++.  ....+...+.+.+++++|+++|+|+++|
T Consensus         2 fi~~v~~vd~r~~~~~v~~~~v~TkD~~~V~v~~~v~yrI~--dp~~~~~--~v~~~~~~i~~~~~~~lR~vig~~~l~e   77 (188)
T 3bk6_A            2 IFEKAVIVDLRTQVLDVPVQETITKDNVPVRVNAVVYFRVV--DPVKAVT--QVKNYIMATSQISQTTLRSVIGQAHLDE   77 (188)
T ss_dssp             CEEECCCCCSSCEEEEEEEEEEECTTSCEEEEEEEEEEEES--CHHHHHH--SSSCHHHHHHHHHHHHHHHHHHTSCHHH
T ss_pred             ceEEEEEEeeeEEEEecCCceeEcCCCCEEEEEEEEEEEEC--CHHHHHH--HhcCHHHHHHHHHHHHHHHHHccCCHHH
Confidence            57899999999999999875 89999999999999999985  3444443  4445566788999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCeEEEEEEeecccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 026375          100 LITQRETVSREIRKILTERAANFNIALDDVSITSLTFGKEFTSAIEAKQVAAQEAERAKYIVEKAEQDKRSAIIRAQGEA  179 (239)
Q Consensus       100 i~~~R~~i~~~i~~~l~~~l~~~Gi~i~~v~i~~i~~p~~~~~ai~~k~~A~q~ae~~~~~~~~Aeaea~a~~~~Aegea  179 (239)
                      ++++|++|+..+.+.+++.+.+|||+|.+|.|++|.||+++.++|++++              .|++++++++++|+|++
T Consensus        78 ll~~R~~i~~~i~~~l~~~~~~~GI~v~~v~I~~i~~p~ev~~a~~~~~--------------~Aere~~A~i~~Aege~  143 (188)
T 3bk6_A           78 LLSERDKLNMQLQRIIDEATDPWGIKVTAVEIKDVELPAGMQKAMARQA--------------EAERERRARITLAEAER  143 (188)
T ss_dssp             HHHCHHHHHHHHHHHHHHHTGGGTEEEEEEEEEEEEEETTHHHHHHHHH--------------HHHHHHHHHHHHHHHHH
T ss_pred             HHhhHHHHHHHHHHHHHHHHHhcCeEEEEEEEEecCCCHHHHHHHHHHH--------------HHHHHHHHHHHHhHHHH
Confidence            9999999999999999999999999999999999999999999997432              36677888899999999


Q ss_pred             HHHHHHHHHh---hcChhhHHHHHHHHHHHHHH
Q 026375          180 TSAQLIGQAI---ANNPAFITLRKIEAAREIAQ  209 (239)
Q Consensus       180 ~a~~~~a~a~---~~~p~~~~~~~le~~~~~a~  209 (239)
                      +|.+++++|+   +.+|.++++|+||++.++++
T Consensus       144 ~a~~~~a~a~~~~~~~~~~l~lr~le~~~~ia~  176 (188)
T 3bk6_A          144 QAAEKLREAAEIISEHPMALQLRTLQTISDVAG  176 (188)
T ss_dssp             HHHHHHHHHHHHHHHCTTHHHHHHTTC------
T ss_pred             HHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHhc
Confidence            9999998884   46999999999999999986

>4fvg_A Stomatin; mixed alpha-beta fold, membrane scaffold, membrane protein; 1.80A {Mus musculus} PDB: 4fvj_A 4fvf_A

Probab=99.93  E-value=2.3e-25  Score=169.02  Aligned_cols=128  Identities=16%  Similarity=0.234  Sum_probs=100.6

Q ss_pred             EEcccccceEEEEeeeeeEeeeec-ccccCceeEEEEEEEEEeeCCCCHHHHHHHhCccccccccchHHHHHHHHHHhhc
Q 026375           17 LMVPWFERPVIYDVRARPHLVEST-SGSRDLQMVKIGLRVLTRPVADKLPTVYRALGENYNERVLPSIIHETLKAVVAQY   95 (239)
Q Consensus        17 ~~~P~~~~v~~v~~~~~~~~~~~~-~~T~D~~~v~v~~~v~y~i~~~~~~~~~~~~~~~~~~~~l~~~v~~~lr~~~~~~   95 (239)
                      +..||++++.++|+|.++++++.+ ++|+|+..+.|+++++|||.  ++..++.  +.+.++..+...+++++|+++|++
T Consensus         3 l~~P~id~v~~vd~R~~~~d~~~q~vlT~D~~~v~Vd~~v~yrI~--Dp~~~~~--~v~~~~~~l~~~~~~~lR~vig~~   78 (133)
T 4fvg_A            3 LGSPSTDSAAKVDMRTISFDIPPQEVLTKDSVTISVDGVVYYRVQ--NATLAVA--NITNADSATRLLAQTTLRNALGTK   78 (133)
T ss_dssp             -----------CCCSCEEEEEEEEEEECTTCCEEEEEEEEEEEES--CHHHHHH--SSSCHHHHHHHHHHHHHHHHHHTS
T ss_pred             CCCCceeEEEEEEeEEEEecCCCeEEEeCCCCEEEEEEEEEEEEe--ehHHhHh--hhhhHHHHHHHHHHHHHHHHhccc
Confidence            788999999999999999999886 99999999999999999984  4555553  567788889999999999999999


Q ss_pred             CHhHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEEeecccCCHHHHHHHHHHH
Q 026375           96 NASQLITQRETVSREIRKILTERAANFNIALDDVSITSLTFGKEFTSAIEAKQ  148 (239)
Q Consensus        96 ~~~ei~~~R~~i~~~i~~~l~~~l~~~Gi~i~~v~i~~i~~p~~~~~ai~~k~  148 (239)
                      ++++++++|++|+..+++.+++.+++|||+|.+|.|+++.||+++.+||.+++
T Consensus        79 ~ldeil~~r~~i~~~i~~~l~~~~~~~GI~V~~V~ikdi~~P~~v~~am~~~~  131 (133)
T 4fvg_A           79 NLSQILSDREEIAHHMQSTLDDATDDWGIKVERVEIKDVKLPVQLQRAMAAEA  131 (133)
T ss_dssp             CHHHHHHCHHHHHHHHHHHHHHHHGGGTEEEEEEEEEEEECCCC---------
T ss_pred             cHHHHHhhHHHHHHHHHHHHHHHHhcCCEEEEEEEEEecCCCHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999996443

>1win_A Flotillin 2; BAND 7 domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, cell adhesion; NMR {Mus musculus} SCOP: d.43.2.1

Probab=99.87  E-value=6.1e-23  Score=157.49  Aligned_cols=128  Identities=9%  Similarity=0.119  Sum_probs=111.4

Q ss_pred             cccceEEEEeeeeeEeeeec-ccccCceeEEEEEEEEEeeCC--CCHHHHHHHh-C--ccccccccchHHHHHHHHHHhh
Q 026375           21 WFERPVIYDVRARPHLVEST-SGSRDLQMVKIGLRVLTRPVA--DKLPTVYRAL-G--ENYNERVLPSIIHETLKAVVAQ   94 (239)
Q Consensus        21 ~~~~v~~v~~~~~~~~~~~~-~~T~D~~~v~v~~~v~y~i~~--~~~~~~~~~~-~--~~~~~~~l~~~v~~~lr~~~~~   94 (239)
                      |++++.++|++.++++++.+ +.|+|++++.|+++++|||..  ......+.+| +  .+..+..+.+.+++.+|+++|+
T Consensus         3 ~i~~v~~vdlr~~~ldv~~q~viTkD~v~v~Vdavv~~rI~dd~~~~~~a~~~~~~~~~~~~~~~l~~~~~~~LR~viG~   82 (143)
T 1win_A            3 SGSSGQRISLEIMTLQPRCEDVETAEGVALTVTGVAQVKIMTEKELLAVACEQFLGKNVQDIKNVVLQTLEGHLRSILGT   82 (143)
T ss_dssp             CCCCCCSCCCSCEEECCCEEEEECSSSCEEEECCEEEEEECCCSSCCHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cceEEEEEECceEEEeCCcceeEcCCCCEEEEEEEEEEEECCCHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHhc
Confidence            57899999999999999987 999999999999999999952  3333333333 3  2445677889999999999999


Q ss_pred             cCHhHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEEeecccCCHHHHHHHHHHH
Q 026375           95 YNASQLITQRETVSREIRKILTERAANFNIALDDVSITSLTFGKEFTSAIEAKQ  148 (239)
Q Consensus        95 ~~~~ei~~~R~~i~~~i~~~l~~~l~~~Gi~i~~v~i~~i~~p~~~~~ai~~k~  148 (239)
                      ++++|++++|++|.+.+.+.+++.+.+|||+|.+|.|++|++|+++.+||+.++
T Consensus        83 ~tldeils~R~~i~~~v~~~~~~~~~~~Gi~V~~v~IkdI~~p~~~~~am~~~~  136 (143)
T 1win_A           83 LTVEQIYQDRDQFAKLVREVAAPDVGRMGIEILSFTIKDVYDKVDYLSSLGKTQ  136 (143)
T ss_dssp             SCHHHHHHTHHHHHHHHHHHHHHHHTTTTEEEEEEECCCEECTTCHHHHHCCCC
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEeecChHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999996443

>2rpb_A Hypothetical membrane protein; SPFH domain; NMR {Pyrococcus horikoshii}

Probab=99.78  E-value=1.5e-19  Score=132.98  Aligned_cols=109  Identities=13%  Similarity=0.190  Sum_probs=96.8

Q ss_pred             EEEeeeeeEeeeec-ccccCceeEEEEEEEEEeeCCCCHHHHHHHhCccccccccchHHHHHHHHHHhhcCHhHHHHHHH
Q 026375           27 IYDVRARPHLVEST-SGSRDLQMVKIGLRVLTRPVADKLPTVYRALGENYNERVLPSIIHETLKAVVAQYNASQLITQRE  105 (239)
Q Consensus        27 ~v~~~~~~~~~~~~-~~T~D~~~v~v~~~v~y~i~~~~~~~~~~~~~~~~~~~~l~~~v~~~lr~~~~~~~~~ei~~~R~  105 (239)
                      .+|+|.++++++.+ +.|+|++++.+++++.|||..  +..++.++  ..++..|.+.+++++|+++|+++++|++++|+
T Consensus         4 ~vd~r~~~~~~~~~~v~T~D~~~v~v~~~v~~rI~d--p~~~~~~v--~~~~~~l~~~~~~~lR~vig~~~l~ei~~~R~   79 (113)
T 2rpb_A            4 HVDLREHVIDVPPQEVICKDNVVVTVDAVVYYQVID--PVKAVYNV--SDFLMAIVKLAQTNLRAIIGEMELDETLSGRD   79 (113)
T ss_dssp             CCCCCCEEEECCCEEEECTTSCEEEECEEEEEEESC--TTTCTTTT--THHHHHHHHHHHHHHHHHHTSCCTTHHHHCHH
T ss_pred             EEeeeEEEEecCcceeEeCCCCEEEEEEEEEEEECC--HHHHHHhc--CCHHHHHHHHHHHHHHHHHhcCcHHHHHhCHH
Confidence            57899999999875 999999999999999999843  33344433  34567799999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhcCCeEEEEEEeecccCCHH
Q 026375          106 TVSREIRKILTERAANFNIALDDVSITSLTFGKE  139 (239)
Q Consensus       106 ~i~~~i~~~l~~~l~~~Gi~i~~v~i~~i~~p~~  139 (239)
                      +|++.+++.+++.+.+|||+|.+|.|+++.||++
T Consensus        80 ~i~~~i~~~l~~~~~~~Gi~v~~v~I~~i~~p~e  113 (113)
T 2rpb_A           80 IINARLREELDKITDRWGVKITRVEIQRIDPPKD  113 (113)
T ss_dssp             HHHHHHHHHHHHHHGGGTEECCCEEECCCBCCCC
T ss_pred             HHHHHHHHHHHHHHHhcCeEEEEEEEEEecCCCC
Confidence            9999999999999999999999999999999974

>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A

Probab=98.52  E-value=7.5e-06  Score=76.68  Aligned_cols=105  Identities=10%  Similarity=-0.019  Sum_probs=71.8

Q ss_pred             cccccCceeEEEEEEEEEeeCC---CCHHHHHHHhCccccccccchHHHHHHHHHHhhcCHhHHHHHHHHHHHHHHHHHH
Q 026375           40 TSGSRDLQMVKIGLRVLTRPVA---DKLPTVYRALGENYNERVLPSIIHETLKAVVAQYNASQLITQRETVSREIRKILT  116 (239)
Q Consensus        40 ~~~T~D~~~v~v~~~v~y~i~~---~~~~~~~~~~~~~~~~~~l~~~v~~~lr~~~~~~~~~ei~~~R~~i~~~i~~~l~  116 (239)
                      .+-|+|...+.+.++.+|+++.   .+....-.-|...++-.-+-..+.|.+|..+++.+++++..+-..|-...-=..+
T Consensus       528 ~vET~DhArL~L~LsYnW~F~~~d~~~~~~~~k~Fsv~DFvGd~Ck~iaSriR~aVA~~~Fd~FHknsa~iir~aVFg~~  607 (861)
T 2zuo_A          528 TIETADHARLQLQLAYNWHFELKNRNDPAEAAKLFSVPDFVGDACKAIASRVRGAVASVTFDDFHKNSARIIRMAVFGFE  607 (861)
T ss_dssp             EEECTTCCEEEEEEEEEEEECCTTTTCHHHHHGGGSSSSHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHSSCCC
T ss_pred             EEEEcCceEEEEEEEEEEEEeccCCCChhhhhhhccCCchHHHHHHHHHHHHHHHhhcCcHHHHhhhHHHHHHHhhcCCC
Confidence            3669999999999999999854   3333333333543333446678899999999999999999776665332211101


Q ss_pred             H------------------HHhcCCeEEEEEEeecccCCH-HHHHHH
Q 026375          117 E------------------RAANFNIALDDVSITSLTFGK-EFTSAI  144 (239)
Q Consensus       117 ~------------------~l~~~Gi~i~~v~i~~i~~p~-~~~~ai  144 (239)
                      +                  .+..-|+.|++|.|+++.|-+ ...+++
T Consensus       608 ~~~~~~~~~~~~~~~~~~~~F~~N~lvitsVDvqsvEpvDqrtrd~L  654 (861)
T 2zuo_A          608 MSEDTGPDGTLLPKARDQAVFPQNGLVVSSVDVQSVEPVDQRTRDAL  654 (861)
T ss_dssp             -------------CCCSCEECTTTCEEEEEEEEEEEEESSHHHHHHH
T ss_pred             cccccccccccccCcccceEEccCCeEEEEEeeeeecccCHHHHHHH
Confidence            1                  145679999999999999864 344444

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	239
d1wina_	143	d.43.2.1 (A:) Flotillin-2 {Mouse (Mus musculus) [T	2e-09

>d1wina_ d.43.2.1 (A:) Flotillin-2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 143

class: Alpha and beta proteins (a+b)
fold: EF-Ts domain-like
superfamily: Band 7/SPFH domain
family: Band 7/SPFH domain
domain: Flotillin-2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 52.4 bits (125), Expect = 2e-09
 Identities = 10/117 (8%), Positives = 40/117 (34%), Gaps = 5/117 (4%)

Query: 43  SRDLQMVKIGLRVLTRPVADKLPTVYR-----ALGENYNERVLPSIIHETLKAVVAQYNA 97
           + +   + +      + + +K                  + V+   +   L++++     
Sbjct: 26  TAEGVALTVTGVAQVKIMTEKELLAVACEQFLGKNVQDIKNVVLQTLEGHLRSILGTLTV 85

Query: 98  SQLITQRETVSREIRKILTERAANFNIALDDVSITSLTFGKEFTSAIEAKQVAAQEA 154
            Q+   R+  ++ +R++         I +   +I  +    ++ S++   Q +   +
Sbjct: 86  EQIYQDRDQFAKLVREVAAPDVGRMGIEILSFTIKDVYDKVDYLSSLGKTQTSGPSS 142

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	239
d1wina_	143	Flotillin-2 {Mouse (Mus musculus) [TaxId: 10090]}	99.85

>d1wina_ d.43.2.1 (A:) Flotillin-2 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: EF-Ts domain-like
superfamily: Band 7/SPFH domain
family: Band 7/SPFH domain
domain: Flotillin-2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.85  E-value=2e-22  Score=152.77  Aligned_cols=128  Identities=8%  Similarity=0.114  Sum_probs=111.7

Q ss_pred             cceEEEEeeeeeEeeeec-ccccCceeEEEEEEEEEeeCCCCHHHH--HHHh---CccccccccchHHHHHHHHHHhhcC
Q 026375           23 ERPVIYDVRARPHLVEST-SGSRDLQMVKIGLRVLTRPVADKLPTV--YRAL---GENYNERVLPSIIHETLKAVVAQYN   96 (239)
Q Consensus        23 ~~v~~v~~~~~~~~~~~~-~~T~D~~~v~v~~~v~y~i~~~~~~~~--~~~~---~~~~~~~~l~~~v~~~lr~~~~~~~   96 (239)
                      .+++++|++.++++++.+ ++|+||+++.|++++.|||.++.....  ..+|   ..+..+..|.+.+++++|+++|+|+
T Consensus         5 ~s~~rislr~~~l~~~~q~v~TkD~v~v~V~a~v~~rV~~~~~~~~~a~~~~l~~~~~~~~~~i~~~~~~~lR~vig~~~   84 (143)
T d1wina_           5 SSGQRISLEIMTLQPRCEDVETAEGVALTVTGVAQVKIMTEKELLAVACEQFLGKNVQDIKNVVLQTLEGHLRSILGTLT   84 (143)
T ss_dssp             CCCCSCCCSCEEECCCEEEEECSSSCEEEECCEEEEEECCCSSCCHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred             CceeEeeeeEEeecCCCceEECCCCCEEEEEEEEEEEEcCcHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcccc
Confidence            356789999999999987 899999999999999999965553221  2222   2466778899999999999999999


Q ss_pred             HhHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEEeecccCCHHHHHHHHHHHHH
Q 026375           97 ASQLITQRETVSREIRKILTERAANFNIALDDVSITSLTFGKEFTSAIEAKQVA  150 (239)
Q Consensus        97 ~~ei~~~R~~i~~~i~~~l~~~l~~~Gi~i~~v~i~~i~~p~~~~~ai~~k~~A  150 (239)
                      +++++++|++|.+.+.+.+++.+.+|||+|.++.|+||.+|++|.++|.+++.|
T Consensus        85 l~el~~~R~~i~~~v~~~i~~~l~~~Gi~v~~v~I~dI~~~~~~~~a~~~~q~A  138 (143)
T d1wina_          85 VEQIYQDRDQFAKLVREVAAPDVGRMGIEILSFTIKDVYDKVDYLSSLGKTQTS  138 (143)
T ss_dssp             HHHHHHTHHHHHHHHHHHHHHHHTTTTEEEEEEECCCEECTTCHHHHHCCCCCC
T ss_pred             HHHHHhCHHHHHHHHHHHHHHHHHHhCeEEEEEEEEecCCcHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999999999999999766544