Citrus Sinensis ID: 026384

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------24
Protein Sequence
MAFASRLASKSKQLCSSQVILQRQHAISVRFFANEAAPQALKGDEMLKNIFLDVKKKFETALGVLRKEKITIAPEDPAAVSQYANVMKTVREKADLFSESQRIAYTIETRTAGIPDARTYLLTLKEIRERGLIDEHGAEAMMMDALEKVEKEIKKPLMRNDKKGMALLTAEFDKINKKLGIRKEDLPKYEEQLELKIAKAQLEELKKDALEAMETQKKREEFKDEEMVEVKSLDVRNFL
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccEcccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHcccccccHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHccccHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccEccHHHcc
Coil and Loop (DISEMBL)
MAFASRLASKSKQLCSSQVILQRQHAISVRffaneaapqalkgDEMLKNIFLDVKKKFETALGVLrkekitiapedpaavSQYANVMKTVREKADLFSESQRIAYTIETRTAGIPDARTYLLTLKEIRERGLIDEHGAEAMMMDALEKVEKEIKKPLMRNDKKGMALLTAEFDKINKklgirkedlPKYEEQLELKIAKAQLEELKKDALEAMETQKKREEFKDEEMVEVKSLDVRNFL
Flexible Loop (DISEMBL)
mafasrlaskskqlcSSQVILQRQHAISVRFFANEAAPQALKGDEMLKNIFLDVKKKFETALGVlrkekitiapedpaavsQYANVMKTVREKADLFSESQRIAYtietrtagipdaRTYLLTLKEIRERGLIDEHGAEAMMMDALEKVEKEIKKPLMRNDKKGMALLTAEFDkinkklgirkedlPKYEEQLELKIAKAQLEELKKDALEAMETQkkreefkdeemvevksldvrnfl
Low Complexity Region (SEG)
MAFASRLASKSKQLCSSQVILQRQHAISVRFFANEAAPQALKGDEMLKNIFLDVKKKFETALGVLRKEKITIAPEDPAAVSQYANVMKTVREKADLFSESQRIAYTIETRTAGIPDARTYLLTLKEIRERGLIDEHGAEAMMMDALEKVEKEIKKPLMRNDKKGMALLTAEFDKINKKLGIRKEDLPKYEEQLELKIAKAQLEELKKDALEAMETQKKREEFKDEEMVEVKSLDVRNFL
Disordered region (IsUnstruct)
**************CSSQVILQRQHAISVRFFANEAAPQALKGDEMLKNIFLDVKKKFETALGVLR****************************DLFSESQRIAYTIETRTAGIPDARTYLLTLKEIRERGLIDEHG****************************ALLTAEFDKINKKLGI**********************************************************
Disordered Region (DISOPRED)
************QLCSSQVILQRQHAISV*******************NIFLDVKKKFETALGVLRKEKITIAPEDPAAVSQYANVMKTVREKADLFSESQRIAYTIETRTAGIPDARTYLLTLKE**********GAEAMMMDALEKVEKEIKKPLMRNDKKGMALLTAEFDKINKKLGIRKEDLPKYEEQLELKIAKAQLEEL********************EMVEVKSLDVRNFL
Disordered Region (DISEMBL)
*****************QVILQRQHAISVRFFANEAAPQALKGDEMLKNIFLDVKKKFETALGVLRKEKITIAPEDPAAVSQYANVMKTVREKADLFSESQRIAYTIETRTAGIPDARTYLLTLKEIRERGLIDEHGAEAMMMDALEKVEKEIKKPLMRNDKKGMALLTAEFDKINKKLGIRKEDLPKYEEQLELKIAKAQLEELKKDALEAMETQKKREEFKDEEMVEVKSLDVRNFL
Disordered Region (DISPRO)
******LASKSKQLCSSQVILQRQHAISVRFFANEAAPQALKGDEMLKNIFLDVKKKFETALGVLRKEKITIAPEDPAAVSQYANVMKTVREKADLFSESQRIAYTIETRTAGIPDARTYLLTLKEIRERGLIDEHGAEAMMMDALEKVEKEIKKPLMRNDKKGMALLTAEFDKINKKLGIRKEDLPKYEEQLELKIAKAQLEELKKDALEAMETQKKREEFKDEEMVEVKSLDV**FL
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAFASRLASKSKQLCSSQVILQRQHAISVRFFANEAAPQALKGDEMLKNIFLDVKKKFETALGVLRKEKITIAPEDPAAVSQYANVMKTVREKADLFSESQRIAYTIETRTAGIPDARTYLLTLKEIRERGLIDEHGAEAMMMDALEKVEKEIKKPLMRNDKKGMALLTAEFDKINKKLGIRKEDLPxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxEEFKDEEMVEVKSLDVRNFL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	239	2.2.26 [Sep-21-2011]
Q9SJ12	240	Probable ATP synthase 24	yes	no	1.0	0.995	0.716	2e-93
P80088	32	ATP synthase 28 kDa subun	N/A	no	0.104	0.781	0.8	0.0005

>sp|Q9SJ12|ATP7_ARATH Probable ATP synthase 24 kDa subunit, mitochondrial OS=Arabidopsis thaliana GN=At2g21870 PE=1 SV=1

 Score =  342 bits (876), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 172/240 (71%), Positives = 201/240 (83%), Gaps = 1/240 (0%)

Query: 1   MAFASRLASKSKQLCSSQVILQRQHAISVRFFANEAAPQALKGDEMLKNIFLDVKKKFET 60
           MA+ASR  S+SKQL    VILQ+QHAI VR FA EAA    KGDEMLK +F D+K KF+ 
Sbjct: 1   MAYASRFLSRSKQLQGGLVILQQQHAIPVRAFAKEAARPTFKGDEMLKGVFFDIKNKFQA 60

Query: 61  ALGVLRKEKITIAPEDPAAVSQYANVMKTVREKADLFSESQRIAYTIETRTAGIPDARTY 120
           A+ +LRKEKIT+ PEDPAAV QYANVMKT+R+KAD+FSESQRI + I+T T  IPDAR Y
Sbjct: 61  AVDILRKEKITLDPEDPAAVKQYANVMKTIRQKADMFSESQRIKHDIDTETQDIPDARAY 120

Query: 121 LLTLKEIR-ERGLIDEHGAEAMMMDALEKVEKEIKKPLMRNDKKGMALLTAEFDKINKKL 179
           LL L+EIR  RGL DE GAEAMM +ALEKVEK+IKKPL+R+DKKGM LL AEF+K NKKL
Sbjct: 121 LLKLQEIRTRRGLTDELGAEAMMFEALEKVEKDIKKPLLRSDKKGMDLLVAEFEKGNKKL 180

Query: 180 GIRKEDLPKYEEQLELKIAKAQLEELKKDALEAMETQKKREEFKDEEMVEVKSLDVRNFL 239
           GIRKEDLPKYEE LEL +AKAQL+ELK DA+EAME+QKK+EEF+DEEM +VKSLD+RNF+
Sbjct: 181 GIRKEDLPKYEENLELSMAKAQLDELKSDAVEAMESQKKKEEFQDEEMPDVKSLDIRNFI 240

Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. Part of the complex F(0) domain.
Arabidopsis thaliana (taxid: 3702)

>sp|P80088|ATP7_SPIOL ATP synthase 28 kDa subunit, mitochondrial (Fragment) OS=Spinacia oleracea PE=1 SV=1

 Score = 44.7 bits (104), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 20/25 (80%), Positives = 23/25 (92%)

Query: 37 APQALKGDEMLKNIFLDVKKKFETA 61
          AP+ LKG+EMLK IFL+VKKKFETA
Sbjct: 8  APKGLKGNEMLKGIFLEVKKKFETA 32

Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. Part of the complex F(0) domain.

Spinacia oleracea (taxid: 3562)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	239
225438529	240	PREDICTED: probable ATP synthase 24 kDa	1.0	0.995	0.875	1e-115
147819925	240	hypothetical protein VITISV_031883 [Viti	1.0	0.995	0.866	1e-114
255582813	243	conserved hypothetical protein [Ricinus	1.0	0.983	0.814	1e-104
449448424	240	PREDICTED: probable ATP synthase 24 kDa	1.0	0.995	0.795	1e-102
449515821	240	PREDICTED: probable ATP synthase 24 kDa	1.0	0.995	0.791	1e-102
224093896	240	predicted protein [Populus trichocarpa]	1.0	0.995	0.766	1e-100
118484162	240	unknown [Populus trichocarpa]	1.0	0.995	0.766	2e-99
356512762	241	PREDICTED: probable ATP synthase 24 kDa	1.0	0.991	0.771	2e-98
388499758	241	unknown [Lotus japonicus]	1.0	0.991	0.771	2e-98
255645559	241	unknown [Glycine max]	1.0	0.991	0.767	6e-98

>gi|225438529|ref|XP_002279389.1| PREDICTED: probable ATP synthase 24 kDa subunit, mitochondrial [Vitis vinifera] gi|296082520|emb|CBI21525.3| unnamed protein product [Vitis vinifera]

 Score =  419 bits (1077), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 210/240 (87%), Positives = 225/240 (93%), Gaps = 1/240 (0%)

Query: 1   MAFASRLASKSKQLCSSQVILQRQHAISVRFFANEAAPQALKGDEMLKNIFLDVKKKFET 60
           MAF+SRL SKSKQL  SQ+ILQ+QHA+ VRFFA EAAP ALKGDEMLKNIFL+VKKKFET
Sbjct: 1   MAFSSRLLSKSKQLYGSQIILQQQHAVPVRFFAKEAAPPALKGDEMLKNIFLEVKKKFET 60

Query: 61  ALGVLRKEKITIAPEDPAAVSQYANVMKTVREKADLFSESQRIAYTIETRTAGIPDARTY 120
           A+GVLRKEKITI PEDPAAV+QYA VMKTVREKADLFSESQRI YTI+TRT GIPDARTY
Sbjct: 61  AMGVLRKEKITIDPEDPAAVNQYAKVMKTVREKADLFSESQRIQYTIQTRTQGIPDARTY 120

Query: 121 LLTLKEIR-ERGLIDEHGAEAMMMDALEKVEKEIKKPLMRNDKKGMALLTAEFDKINKKL 179
           LLTLKEIR +RGL DE GAEAMMMDALEKVEKE+KKPLMRNDKKGMALL AEFDK+NKKL
Sbjct: 121 LLTLKEIRIKRGLTDELGAEAMMMDALEKVEKELKKPLMRNDKKGMALLMAEFDKVNKKL 180

Query: 180 GIRKEDLPKYEEQLELKIAKAQLEELKKDALEAMETQKKREEFKDEEMVEVKSLDVRNFL 239
           G+RKEDLPKYEEQLELKIAKAQLEELKKDALEAMETQKKREEFKDE MV+VKSLD+RNF+
Sbjct: 181 GVRKEDLPKYEEQLELKIAKAQLEELKKDALEAMETQKKREEFKDEAMVDVKSLDIRNFI 240

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147819925|emb|CAN62814.1| hypothetical protein VITISV_031883 [Vitis vinifera]

 Score =  415 bits (1066), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 208/240 (86%), Positives = 223/240 (92%), Gaps = 1/240 (0%)

Query: 1   MAFASRLASKSKQLCSSQVILQRQHAISVRFFANEAAPQALKGDEMLKNIFLDVKKKFET 60
           MAF+SRL SKSKQL  SQ+ILQ+QHA+ VRFFA EAAP ALKGDEMLKNIFL+VKKKFET
Sbjct: 1   MAFSSRLLSKSKQLYGSQIILQQQHAVPVRFFAKEAAPPALKGDEMLKNIFLEVKKKFET 60

Query: 61  ALGVLRKEKITIAPEDPAAVSQYANVMKTVREKADLFSESQRIAYTIETRTAGIPDARTY 120
           A+GVLRKEKITI PEDPAAV+QYA VMKTVREKADLFSESQRI YTI+TRT GIPDARTY
Sbjct: 61  AMGVLRKEKITIDPEDPAAVNQYAKVMKTVREKADLFSESQRIQYTIQTRTQGIPDARTY 120

Query: 121 LLTLKEIR-ERGLIDEHGAEAMMMDALEKVEKEIKKPLMRNDKKGMALLTAEFDKINKKL 179
           LLTLKEIR +RGL DE GAEAMMMDALEKVEKE+KKPLMRNDKKGMALL AEFDK+NKKL
Sbjct: 121 LLTLKEIRIKRGLTDELGAEAMMMDALEKVEKELKKPLMRNDKKGMALLMAEFDKVNKKL 180

Query: 180 GIRKEDLPKYEEQLELKIAKAQLEELKKDALEAMETQKKREEFKDEEMVEVKSLDVRNFL 239
           G+RKEDLPKYEEQLELKIAKAQLEELKKDALEAMETQKKR  FKDE MV+VKSLD+RNF+
Sbjct: 181 GVRKEDLPKYEEQLELKIAKAQLEELKKDALEAMETQKKRRNFKDEAMVDVKSLDIRNFI 240

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255582813|ref|XP_002532180.1| conserved hypothetical protein [Ricinus communis] gi|223528128|gb|EEF30198.1| conserved hypothetical protein [Ricinus communis]

 Score =  382 bits (982), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 198/243 (81%), Positives = 219/243 (90%), Gaps = 4/243 (1%)

Query: 1   MAFASRLASKSKQLCSSQVILQRQH-AISVRFFANEAAPQA--LKGDEMLKNIFLDVKKK 57
           MAF+SRL S+SKQ+  ++VI+Q+Q   I VR+FA +A      LKGDEMLKN+FLDVK+K
Sbjct: 1   MAFSSRLLSRSKQVYGNRVIMQQQELVIPVRYFAKKADAAPPALKGDEMLKNVFLDVKRK 60

Query: 58  FETALGVLRKEKITIAPEDPAAVSQYANVMKTVREKADLFSESQRIAYTIETRTAGIPDA 117
           FETA+G+LRKEKITIAPEDPAAVSQYA VMKT+REKADLFSESQRI YTIETRT  IPDA
Sbjct: 61  FETAIGILRKEKITIAPEDPAAVSQYAKVMKTIREKADLFSESQRIKYTIETRTKDIPDA 120

Query: 118 RTYLLTLKEIR-ERGLIDEHGAEAMMMDALEKVEKEIKKPLMRNDKKGMALLTAEFDKIN 176
           RTYLLTL+EIR +RGL DE GAEAMMMDALEKVE E+KKPLMRNDKKGMALLTAEFDKIN
Sbjct: 121 RTYLLTLREIRIKRGLTDELGAEAMMMDALEKVENELKKPLMRNDKKGMALLTAEFDKIN 180

Query: 177 KKLGIRKEDLPKYEEQLELKIAKAQLEELKKDALEAMETQKKREEFKDEEMVEVKSLDVR 236
           KKLGIRKEDLPKYEE LELKIAKAQLEELKKDALEAM+TQKKREEFKDEEM +VKSLD+R
Sbjct: 181 KKLGIRKEDLPKYEEDLELKIAKAQLEELKKDALEAMDTQKKREEFKDEEMADVKSLDIR 240

Query: 237 NFL 239
           NF+
Sbjct: 241 NFI 243

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449448424|ref|XP_004141966.1| PREDICTED: probable ATP synthase 24 kDa subunit, mitochondrial-like [Cucumis sativus]

 Score =  377 bits (969), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 191/240 (79%), Positives = 212/240 (88%), Gaps = 1/240 (0%)

Query: 1   MAFASRLASKSKQLCSSQVILQRQHAISVRFFANEAAPQALKGDEMLKNIFLDVKKKFET 60
           MA +SRL SKSKQ+  SQ IL + HA  VR FA EAAP ALKGDEMLKNIFL+VKKKFET
Sbjct: 1   MALSSRLLSKSKQVLGSQSILHQGHAFPVRHFAKEAAPPALKGDEMLKNIFLEVKKKFET 60

Query: 61  ALGVLRKEKITIAPEDPAAVSQYANVMKTVREKADLFSESQRIAYTIETRTAGIPDARTY 120
           AL V +KEKITI P+DPAAV+QYA VMK  REKADLFSESQRI YTI+TRT  IPDAR+Y
Sbjct: 61  ALAVFKKEKITIDPDDPAAVAQYAKVMKLAREKADLFSESQRIKYTIQTRTQDIPDARSY 120

Query: 121 LLTLKEIR-ERGLIDEHGAEAMMMDALEKVEKEIKKPLMRNDKKGMALLTAEFDKINKKL 179
           LL LKEIR +RGL D+ GAEAMM DALEKVEKE+KKPL+RNDKKGM++L AEFDKIN+KL
Sbjct: 121 LLALKEIRIKRGLSDDLGAEAMMFDALEKVEKELKKPLLRNDKKGMSVLMAEFDKINQKL 180

Query: 180 GIRKEDLPKYEEQLELKIAKAQLEELKKDALEAMETQKKREEFKDEEMVEVKSLDVRNFL 239
           GIR+EDLPKYEEQLELKI+KAQLEE+KKDALEAMETQKKREEFKD+EMV+ KSLDVRNFL
Sbjct: 181 GIRREDLPKYEEQLELKISKAQLEEMKKDALEAMETQKKREEFKDDEMVDTKSLDVRNFL 240

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449515821|ref|XP_004164946.1| PREDICTED: probable ATP synthase 24 kDa subunit, mitochondrial-like [Cucumis sativus]

 Score =  375 bits (964), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 190/240 (79%), Positives = 211/240 (87%), Gaps = 1/240 (0%)

Query: 1   MAFASRLASKSKQLCSSQVILQRQHAISVRFFANEAAPQALKGDEMLKNIFLDVKKKFET 60
           MA +SRL SKSKQ+  SQ IL + H   VR FA EAAP ALKGDEMLKNIFL+VKKKFET
Sbjct: 1   MALSSRLLSKSKQVLGSQSILHQGHVFPVRHFAKEAAPPALKGDEMLKNIFLEVKKKFET 60

Query: 61  ALGVLRKEKITIAPEDPAAVSQYANVMKTVREKADLFSESQRIAYTIETRTAGIPDARTY 120
           AL V +KEKITI P+DPAAV+QYA VMK  REKADLFSESQRI YTI+TRT  IPDAR+Y
Sbjct: 61  ALAVFKKEKITIDPDDPAAVAQYAKVMKLAREKADLFSESQRIKYTIQTRTQDIPDARSY 120

Query: 121 LLTLKEIR-ERGLIDEHGAEAMMMDALEKVEKEIKKPLMRNDKKGMALLTAEFDKINKKL 179
           LL LKEIR +RGL D+ GAEAMM DALEKVEKE+KKPL+RNDKKGM++L AEFDKIN+KL
Sbjct: 121 LLALKEIRIKRGLSDDLGAEAMMFDALEKVEKELKKPLLRNDKKGMSVLMAEFDKINQKL 180

Query: 180 GIRKEDLPKYEEQLELKIAKAQLEELKKDALEAMETQKKREEFKDEEMVEVKSLDVRNFL 239
           GIR+EDLPKYEEQLELKI+KAQLEE+KKDALEAMETQKKREEFKD+EMV+ KSLDVRNFL
Sbjct: 181 GIRREDLPKYEEQLELKISKAQLEEMKKDALEAMETQKKREEFKDDEMVDTKSLDVRNFL 240

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224093896|ref|XP_002310038.1| predicted protein [Populus trichocarpa] gi|222852941|gb|EEE90488.1| predicted protein [Populus trichocarpa]

 Score =  369 bits (946), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 184/240 (76%), Positives = 211/240 (87%), Gaps = 1/240 (0%)

Query: 1   MAFASRLASKSKQLCSSQVILQRQHAISVRFFANEAAPQALKGDEMLKNIFLDVKKKFET 60
           MAF+SRL S+SKQL  SQ IL +QHA  VR++A EAAP  LKGDEMLK+IF D+K+KFET
Sbjct: 1   MAFSSRLLSRSKQLYGSQAILNQQHAFPVRYYAKEAAPAGLKGDEMLKDIFRDIKQKFET 60

Query: 61  ALGVLRKEKITIAPEDPAAVSQYANVMKTVREKADLFSESQRIAYTIETRTAGIPDARTY 120
           A+GVLRKEKITI PE+PAAVS YA VMKT+REKA LFSESQRI +TIE  T  IPDART+
Sbjct: 61  AIGVLRKEKITIDPENPAAVSHYAKVMKTIREKAGLFSESQRIQFTIEEETQDIPDARTF 120

Query: 121 LLTLKEIR-ERGLIDEHGAEAMMMDALEKVEKEIKKPLMRNDKKGMALLTAEFDKINKKL 179
            L L+EIR +RGL DE G EAM MDALEKVEKEIK+PLMRNDKKGMALL AEFDK+NKKL
Sbjct: 121 FLKLQEIRTKRGLSDELGVEAMTMDALEKVEKEIKQPLMRNDKKGMALLMAEFDKVNKKL 180

Query: 180 GIRKEDLPKYEEQLELKIAKAQLEELKKDALEAMETQKKREEFKDEEMVEVKSLDVRNFL 239
           G+R+EDLPKYEE+LELKIAKAQLEELKKDA+EAMETQ+KREEFK+E+ V+V+SLD+RNFL
Sbjct: 181 GVRREDLPKYEEELELKIAKAQLEELKKDAVEAMETQRKREEFKNEKEVDVRSLDIRNFL 240

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118484162|gb|ABK93963.1| unknown [Populus trichocarpa]

 Score =  367 bits (943), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 184/240 (76%), Positives = 210/240 (87%), Gaps = 1/240 (0%)

Query: 1   MAFASRLASKSKQLCSSQVILQRQHAISVRFFANEAAPQALKGDEMLKNIFLDVKKKFET 60
           MAF+SRL S+SKQL  SQ IL +QHA  VR++A EAAP  LKGDEMLK+IF D+K+KFET
Sbjct: 1   MAFSSRLLSRSKQLYGSQAILNQQHAFPVRYYAKEAAPAGLKGDEMLKDIFRDIKQKFET 60

Query: 61  ALGVLRKEKITIAPEDPAAVSQYANVMKTVREKADLFSESQRIAYTIETRTAGIPDARTY 120
           A+GVLRKEKITI PE+PAAVS YA VMKT+REKA LFSESQRI +TIE  T  IPDART+
Sbjct: 61  AIGVLRKEKITIDPENPAAVSHYAKVMKTIREKAGLFSESQRIQFTIEEETQDIPDARTF 120

Query: 121 LLTLKEIR-ERGLIDEHGAEAMMMDALEKVEKEIKKPLMRNDKKGMALLTAEFDKINKKL 179
            L L EIR +RGL DE G EAM MDALEKVEKEIK+PLMRNDKKGMALL AEFDK+NKKL
Sbjct: 121 FLKLGEIRTKRGLSDELGVEAMTMDALEKVEKEIKQPLMRNDKKGMALLMAEFDKVNKKL 180

Query: 180 GIRKEDLPKYEEQLELKIAKAQLEELKKDALEAMETQKKREEFKDEEMVEVKSLDVRNFL 239
           G+R+EDLPKYEE+LELKIAKAQLEELKKDA+EAMETQ+KREEFK+E+ V+V+SLD+RNFL
Sbjct: 181 GVRREDLPKYEEELELKIAKAQLEELKKDAVEAMETQRKREEFKNEKEVDVRSLDIRNFL 240

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356512762|ref|XP_003525085.1| PREDICTED: probable ATP synthase 24 kDa subunit, mitochondrial-like [Glycine max]

 Score =  364 bits (934), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 186/241 (77%), Positives = 212/241 (87%), Gaps = 2/241 (0%)

Query: 1   MAFASRLASKSKQLCSSQVILQRQHAISVRFFANEAAPQALKGDEMLKNIFLDVKKKFET 60
           MA +SRL SKSK +  SQ++LQ++HAI VR FA E+AP ALKGDEMLKNIF++VK KFET
Sbjct: 1   MALSSRLFSKSKLIYGSQILLQKEHAIPVRHFAKESAPPALKGDEMLKNIFVEVKNKFET 60

Query: 61  ALGVLRKEKITIAPEDPAAVSQYANVMKTVREKADLFSESQRIAYTIETRTAGIPDARTY 120
           A+G+L+KEKITI PEDPAAVS YA VMKT+REKA L SESQ I  TIE  T  IPDARTY
Sbjct: 61  AIGILKKEKITIDPEDPAAVSHYAKVMKTIREKASLLSESQDILSTIEIETQDIPDARTY 120

Query: 121 LLTLKEIR-ERGLIDEHGAEAMMMDALEKVEKEIKKPLMRNDKKGMALLTAEFDKINKKL 179
           LLTLKEIR +RGL D+ GAEA+M+DAL+KVEK++KKPL+RNDKKGM LL AEFDKINKKL
Sbjct: 121 LLTLKEIRVKRGLTDDLGAEALMIDALDKVEKDLKKPLLRNDKKGMDLLLAEFDKINKKL 180

Query: 180 GIRKEDLPKYEEQLELKIAKAQLEELKKDALEAMETQKKREEFKDE-EMVEVKSLDVRNF 238
           GIRKEDLPKYEE+LELK+AKAQLEELKKDALEAMETQKKREEFKDE E V+VK+LD+RNF
Sbjct: 181 GIRKEDLPKYEEELELKVAKAQLEELKKDALEAMETQKKREEFKDEPESVDVKTLDIRNF 240

Query: 239 L 239
           L
Sbjct: 241 L 241

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388499758|gb|AFK37945.1| unknown [Lotus japonicus]

 Score =  364 bits (934), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 186/241 (77%), Positives = 213/241 (88%), Gaps = 2/241 (0%)

Query: 1   MAFASRLASKSKQLCSSQVILQRQHAISVRFFANEAAPQALKGDEMLKNIFLDVKKKFET 60
           MA  +RL SKSK    SQV+LQ+++A+ VR FA E+AP ALKGDEMLKN+F++VK KFET
Sbjct: 1   MALRARLFSKSKLAYGSQVLLQKEYAVPVRHFAKESAPPALKGDEMLKNVFVEVKSKFET 60

Query: 61  ALGVLRKEKITIAPEDPAAVSQYANVMKTVREKADLFSESQRIAYTIETRTAGIPDARTY 120
           ALG+L+KEKITIAPEDPAAVS Y NVMKTVREKA+L SESQ I  TIET T  IPDARTY
Sbjct: 61  ALGILKKEKITIAPEDPAAVSHYTNVMKTVREKANLLSESQDILATIETETQDIPDARTY 120

Query: 121 LLTLKEIR-ERGLIDEHGAEAMMMDALEKVEKEIKKPLMRNDKKGMALLTAEFDKINKKL 179
           LLTLKEIR ++GL+D+ GAEAMM+DAL+KVEKE+KKPL+RNDKKGM LL AEFDKINK+L
Sbjct: 121 LLTLKEIRTKKGLLDDLGAEAMMIDALDKVEKELKKPLLRNDKKGMDLLLAEFDKINKQL 180

Query: 180 GIRKEDLPKYEEQLELKIAKAQLEELKKDALEAMETQKKREEFKDE-EMVEVKSLDVRNF 238
           GIRKEDLPKYEEQLELK+AKAQLEELKKD +EAMETQKKREEFKDE E V+VK+LD+RNF
Sbjct: 181 GIRKEDLPKYEEQLELKLAKAQLEELKKDVVEAMETQKKREEFKDEREAVDVKTLDIRNF 240

Query: 239 L 239
           L
Sbjct: 241 L 241

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255645559|gb|ACU23274.1| unknown [Glycine max]

 Score =  362 bits (929), Expect = 6e-98,   Method: Compositional matrix adjust.
 Identities = 185/241 (76%), Positives = 211/241 (87%), Gaps = 2/241 (0%)

Query: 1   MAFASRLASKSKQLCSSQVILQRQHAISVRFFANEAAPQALKGDEMLKNIFLDVKKKFET 60
           MA +SRL SKSK +  SQ++LQ++HAI VR FA E+AP ALKGDEMLKNIF++VK KFET
Sbjct: 1   MALSSRLFSKSKLIYGSQILLQKEHAIPVRHFAKESAPPALKGDEMLKNIFVEVKNKFET 60

Query: 61  ALGVLRKEKITIAPEDPAAVSQYANVMKTVREKADLFSESQRIAYTIETRTAGIPDARTY 120
           A+G+L+KEKITI PEDPAAVS YA VMKT+REKA L SESQ I  TIE  T  IPDARTY
Sbjct: 61  AIGILKKEKITIDPEDPAAVSHYAKVMKTIREKASLLSESQDILSTIEIETQDIPDARTY 120

Query: 121 LLTLKEIR-ERGLIDEHGAEAMMMDALEKVEKEIKKPLMRNDKKGMALLTAEFDKINKKL 179
           LLTLKEIR +RGL D+ GAEA+M+DAL+KVEK++KKPL+RNDKKGM L  AEFDKINKKL
Sbjct: 121 LLTLKEIRVKRGLTDDLGAEALMIDALDKVEKDLKKPLLRNDKKGMDLFLAEFDKINKKL 180

Query: 180 GIRKEDLPKYEEQLELKIAKAQLEELKKDALEAMETQKKREEFKDE-EMVEVKSLDVRNF 238
           GIRKEDLPKYEE+LELK+AKAQLEELKKDALEAMETQKKREEFKDE E V+VK+LD+RNF
Sbjct: 181 GIRKEDLPKYEEELELKVAKAQLEELKKDALEAMETQKKREEFKDEPESVDVKTLDIRNF 240

Query: 239 L 239
           L
Sbjct: 241 L 241

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	239
TAIR|locus:2052464	240	MGP1 "MALE GAMETOPHYTE DEFECTI	1.0	0.995	0.716	5.4e-86
UNIPROTKB|Q7DM06	64	Q7DM06 "Putative ATP synthase	0.251	0.937	0.733	5.7e-20
UNIPROTKB|P42639	284	TPM1 "Tropomyosin alpha-1 chai	0.870	0.732	0.271	6.8e-05
UNIPROTKB|F1MH18	494	MNS1 "Meiosis-specific nuclear	0.790	0.382	0.262	0.00052
UNIPROTKB|F1P912	326	TPM1 "Uncharacterized protein"	0.924	0.677	0.260	0.00059
UNIPROTKB|F1P9F8	1681	GCC2 "Uncharacterized protein"	0.891	0.126	0.234	0.00063
UNIPROTKB|Q5KR49	284	TPM1 "Tropomyosin alpha-1 chai	0.870	0.732	0.266	0.00077
UNIPROTKB|F2Z5B6	284	TPM1 "Tropomyosin alpha-1 chai	0.870	0.732	0.266	0.00077

TAIR|locus:2052464 MGP1 "MALE GAMETOPHYTE DEFECTIVE 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 860 (307.8 bits), Expect = 5.4e-86, P = 5.4e-86
 Identities = 172/240 (71%), Positives = 201/240 (83%)

Query:     1 MAFASRLASKSKQLCSSQVILQRQHAISVRFFANEAAPQALKGDEMLKNIFLDVKKKFET 60
             MA+ASR  S+SKQL    VILQ+QHAI VR FA EAA    KGDEMLK +F D+K KF+ 
Sbjct:     1 MAYASRFLSRSKQLQGGLVILQQQHAIPVRAFAKEAARPTFKGDEMLKGVFFDIKNKFQA 60

Query:    61 ALGVLRKEKITIAPEDPAAVSQYANVMKTVREKADLFSESQRIAYTIETRTAGIPDARTY 120
             A+ +LRKEKIT+ PEDPAAV QYANVMKT+R+KAD+FSESQRI + I+T T  IPDAR Y
Sbjct:    61 AVDILRKEKITLDPEDPAAVKQYANVMKTIRQKADMFSESQRIKHDIDTETQDIPDARAY 120

Query:   121 LLTLKEIR-ERGLIDEHGAEAMMMDALEKVEKEIKKPLMRNDKKGMALLTAEFDKINKKL 179
             LL L+EIR  RGL DE GAEAMM +ALEKVEK+IKKPL+R+DKKGM LL AEF+K NKKL
Sbjct:   121 LLKLQEIRTRRGLTDELGAEAMMFEALEKVEKDIKKPLLRSDKKGMDLLVAEFEKGNKKL 180

Query:   180 GIRKEDLPKYEEQLELKIAKAQLEELKKDALEAMETQKKREEFKDEEMVEVKSLDVRNFL 239
             GIRKEDLPKYEE LEL +AKAQL+ELK DA+EAME+QKK+EEF+DEEM +VKSLD+RNF+
Sbjct:   181 GIRKEDLPKYEENLELSMAKAQLDELKSDAVEAMESQKKKEEFQDEEMPDVKSLDIRNFI 240

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0005739 "mitochondrion" evidence=IDA

GO:0005753 "mitochondrial proton-transporting ATP synthase complex" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0005507 "copper ion binding" evidence=IDA

GO:0008270 "zinc ion binding" evidence=IDA

GO:0050897 "cobalt ion binding" evidence=IDA

GO:0009555 "pollen development" evidence=IMP

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=RCA

GO:0009853 "photorespiration" evidence=RCA

GO:0051788 "response to misfolded protein" evidence=RCA

GO:0080129 "proteasome core complex assembly" evidence=RCA

UNIPROTKB|Q7DM06 Q7DM06 "Putative ATP synthase subunit" [Glycine max (taxid:3847)]

 Score = 237 (88.5 bits), Expect = 5.7e-20, P = 5.7e-20
 Identities = 44/60 (73%), Positives = 54/60 (90%)

Query:    18 QVILQRQHAISVRFFANEAAPQALKGDEMLKNIFLDVKKKFETALGVLRKEKITIAPEDP 77
             Q++LQ++HAI VR FA E+AP ALKGDEMLKNIF++VK KFETA+G+L+KEKITI PEDP
Sbjct:     5 QILLQKEHAIPVRHFAKESAPPALKGDEMLKNIFVEVKNKFETAIGILKKEKITIDPEDP 64

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|P42639 TPM1 "Tropomyosin alpha-1 chain" [Sus scrofa (taxid:9823)]

 Score = 118 (46.6 bits), Expect = 6.8e-05, P = 6.8e-05
 Identities = 60/221 (27%), Positives = 108/221 (48%)

Query:    21 LQRQHAISVRFFANEAAPQALKG-DEMLKNIFLDVKKKFETALGVLRKEKITIAPEDPAA 79
             L +++A+  R    EA  +A +   + L++  + ++KK +     L  +K + AP+D   
Sbjct:    13 LDKENALD-RAEQAEADKKAAEDRSKRLEDELVSLQKKLKATEDEL--DKYSEAPKDAQE 69

Query:    80 VSQYANVMKTVREKADLFSESQRIAYTIETRTAGIPDARTYLLTLKEIRERGLIDEHGAE 139
               + A    T  E AD+ S ++RI    E          T L  L+E  +     E G +
Sbjct:    70 KLELAEKKATDAE-ADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAADESERGMK 128

Query:   140 AMMMDALEKVEK-EIKKPLMRNDKKGMALLTAEFDKINKKLGIRKEDLPKYEEQLELKIA 198
              +   A +  EK EI++  ++  K        +++++ +KL I + DL + EE+ EL   
Sbjct:   129 VIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEG 188

Query:   199 K-AQLEE-LKK--DALEAMETQKKR---EEFKDEEMVEVKS 232
             K A+LEE LK   + L+++E Q ++   +E K EE ++V S
Sbjct:   189 KCAELEEELKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLS 229

GO:0005856 "cytoskeleton" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0003779 "actin binding" evidence=IEA

UNIPROTKB|F1MH18 MNS1 "Meiosis-specific nuclear structural protein 1" [Bos taurus (taxid:9913)]

 Score = 114 (45.2 bits), Expect = 0.00052, P = 0.00052
 Identities = 57/217 (26%), Positives = 103/217 (47%)

Query:    35 EAAPQALKGDEMLKNIFLDVKKKFETALGVLRKEKITIAP------EDPAAVSQYANVMK 88
             E A Q  + ++ L+ + L  ++K  T L  L++E +          E+ A + +    +K
Sbjct:    70 EEAIQKAEENKRLRELQLAQEEKLATELAKLKRESLKDEKLRQQVRENSAELRELEKKLK 129

Query:    89 TV---REKADLFSESQRIAYTIETRTAGIPDARTYLLTLKEIRERGLIDEHGAEAMMMDA 145
                  +E+A   +E   I Y    R A I  ART +    E  ER + +E  AE     A
Sbjct:   130 AAYMNKERAAQIAEKDAIKYEQMKRDAEI--ARTMM----EEHERLIKEESAAEDKRNQA 183

Query:   146 LEKVEKEIKKPLMRNDKKGMA----LLTAEF--DKINKKLGIRKEDLPKYEEQLE-LKIA 198
               +   +++K L   +KK       LL  +   D+I +K  I +ED  + +++LE +   
Sbjct:   184 KAQYSHDLEKQLEEQEKKKQEAYEQLLKEKLMIDEIVRK--IYEEDQLERQQRLEKMNTT 241

Query:   199 KAQLEELKKDALEAMETQKKREEFKDE--EMVEVKSL 233
             +  +EE +K+  +A+  +KKREE ++E  +++E   L
Sbjct:   242 RRYIEEFQKE--QALWRKKKREEMEEENRKIIEFAKL 276

GO:0005882 "intermediate filament" evidence=IEA

GO:0005635 "nuclear envelope" evidence=IEA

UNIPROTKB|F1P912 TPM1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 111 (44.1 bits), Expect = 0.00059, P = 0.00059
 Identities = 61/234 (26%), Positives = 112/234 (47%)

Query:     7 LASKSKQLCSSQVILQRQHAISVRFFANEAAPQALKGDEMLKNIFLDVKKKFETALGVLR 66
             +A+K K L +S+   +R   +     A ++   A +    L++  + ++KK +     L 
Sbjct:    43 IAAKEKLLRASED--ERDRVLEELHSAEDSLLAADETAAKLEDELVSLQKKLKGTEDEL- 99

Query:    67 KEKITIAPEDPAAVSQYANVMKTVREKADLFSESQRIAYTIETRTAGIPDARTYLLTLKE 126
              +K + A +D     + A    T  E AD+ S ++RI    E          T L  L+E
Sbjct:   100 -DKYSEALKDAQEKLELAEKKATDAE-ADVASLNRRIQLVEEELDRAQERLATALQKLEE 157

Query:   127 IRERGLIDEHGAEAMMMDALEKVEK-EIKKPLMRNDKKGMALLTAEFDKINKKLGIRKED 185
               +     E G + +   A +  EK EI++  ++  K        +++++ +KL I + D
Sbjct:   158 AEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESD 217

Query:   186 LPKYEEQLELKIAK-AQLEE-LKK--DALEAMETQKKR---EEFKDEEMVEVKS 232
             L + EE+ EL  +K A+LEE LK   + L+++E Q ++   +E K EE ++V S
Sbjct:   218 LERAEERAELSESKCAELEEELKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLS 271

GO:0060048 "cardiac muscle contraction" evidence=IEA

GO:0055010 "ventricular cardiac muscle tissue morphogenesis" evidence=IEA

GO:0045214 "sarcomere organization" evidence=IEA

GO:0034614 "cellular response to reactive oxygen species" evidence=IEA

GO:0032587 "ruffle membrane" evidence=IEA

GO:0032059 "bleb" evidence=IEA

GO:0031941 "filamentous actin" evidence=IEA

GO:0030016 "myofibril" evidence=IEA

GO:0008092 "cytoskeletal protein binding" evidence=IEA

GO:0003065 "positive regulation of heart rate by epinephrine" evidence=IEA

GO:0001725 "stress fiber" evidence=IEA

GO:0001701 "in utero embryonic development" evidence=IEA

UNIPROTKB|F1P9F8 GCC2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 119 (46.9 bits), Expect = 0.00063, P = 0.00063
 Identities = 54/230 (23%), Positives = 101/230 (43%)

Query:    15 CSSQVILQRQHAISVRFFANEAAPQALKGDEMLKNIFLDVKKKFETALGVLRKEKITIAP 74
             C     L R H    + F ++   + L   E L++  L++K   E     LR E   +  
Sbjct:   822 CEELRSLLRDHE-QEKVFLSKELEEILSHKEGLQSDLLEMKNANEK----LRLENQNLLS 876

Query:    75 EDPAAVSQYANVMKTVREKADLFSESQRIAYTIETRTAGIPDARTYLLTLKEIRERGLID 134
             +   A  +  +  +T  E+     E + +  ++E + A + + R  LL LK+  E+  I 
Sbjct:   877 QVEEASQKLCSKNETHEEEQIFAKELENLRLSLEQKEAELQNVRAQLLLLKDSLEKSPI- 935

Query:   135 EHGAEAMMMDALEKV---EKEIKKPLMRNDKKGMALLTAEFDKINKKLGIRKEDLPKYEE 191
             E+   +++ +  EK+   EKE K+   + +K     L A   K  K+L   K++     E
Sbjct:   936 ENDQPSLLKELEEKIGYLEKESKE---KEEKINKIKLVAV--KAKKELDSSKKEAQTLRE 990

Query:   192 QLE-LKIAKAQLEELKKDALEAMETQKKR--EEFKDEEMVEVKSLDVRNF 238
             +L+ ++  K QL    +D ++  E+ K    E  K  E ++++     NF
Sbjct:   991 ELDSVRSEKDQLSTSMRDLIQGAESYKNLLLEYDKQSEQLDLEKERANNF 1040

GO:0000042 "protein targeting to Golgi" evidence=IEA

UNIPROTKB|Q5KR49 TPM1 "Tropomyosin alpha-1 chain" [Bos taurus (taxid:9913)]

 Score = 109 (43.4 bits), Expect = 0.00077, P = 0.00077
 Identities = 59/221 (26%), Positives = 107/221 (48%)

Query:    21 LQRQHAISVRFFANEAAPQALKG-DEMLKNIFLDVKKKFETALGVLRKEKITIAPEDPAA 79
             L +++A+  R    EA  +A +   + L++  + ++KK +     L  +K + A +D   
Sbjct:    13 LDKENALD-RAEQAEADKKAAEDRSKQLEDELVSLQKKLKATEDEL--DKYSEALKDAQE 69

Query:    80 VSQYANVMKTVREKADLFSESQRIAYTIETRTAGIPDARTYLLTLKEIRERGLIDEHGAE 139
               + A    T  E AD+ S ++RI    E          T L  L+E  +     E G +
Sbjct:    70 KLELAEKKATDAE-ADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAADESERGMK 128

Query:   140 AMMMDALEKVEK-EIKKPLMRNDKKGMALLTAEFDKINKKLGIRKEDLPKYEEQLELKIA 198
              +   A +  EK EI++  ++  K        +++++ +KL I + DL + EE+ EL   
Sbjct:   129 VIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEG 188

Query:   199 K-AQLEE-LKK--DALEAMETQKKR---EEFKDEEMVEVKS 232
             K A+LEE LK   + L+++E Q ++   +E K EE ++V S
Sbjct:   189 KCAELEEELKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLS 229

GO:0005856 "cytoskeleton" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0003779 "actin binding" evidence=IEA

UNIPROTKB|F2Z5B6 TPM1 "Tropomyosin alpha-1 chain" [Sus scrofa (taxid:9823)]

 Score = 109 (43.4 bits), Expect = 0.00077, P = 0.00077
 Identities = 59/221 (26%), Positives = 107/221 (48%)

Query:    21 LQRQHAISVRFFANEAAPQALKG-DEMLKNIFLDVKKKFETALGVLRKEKITIAPEDPAA 79
             L +++A+  R    EA  +A +   + L++  + ++KK +     L  +K + A +D   
Sbjct:    13 LDKENALD-RAEQAEADKKAAEDRSKQLEDELVSLQKKLKATEDEL--DKYSEALKDAQE 69

Query:    80 VSQYANVMKTVREKADLFSESQRIAYTIETRTAGIPDARTYLLTLKEIRERGLIDEHGAE 139
               + A    T  E AD+ S ++RI    E          T L  L+E  +     E G +
Sbjct:    70 KLELAEKKATDAE-ADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAADESERGMK 128

Query:   140 AMMMDALEKVEK-EIKKPLMRNDKKGMALLTAEFDKINKKLGIRKEDLPKYEEQLELKIA 198
              +   A +  EK EI++  ++  K        +++++ +KL I + DL + EE+ EL   
Sbjct:   129 VIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEG 188

Query:   199 K-AQLEE-LKK--DALEAMETQKKR---EEFKDEEMVEVKS 232
             K A+LEE LK   + L+++E Q ++   +E K EE ++V S
Sbjct:   189 KCAELEEELKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLS 229


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.315   0.130   0.338    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      239       239   0.00092  113 3  10 23  0.45    33
                                                     32  0.44    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  8
  No. of states in DFA:  581 (62 KB)
  Total size of DFA:  199 KB (2113 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  41.97u 0.08s 42.05t   Elapsed:  00:00:22
  Total cpu time:  41.97u 0.08s 42.05t   Elapsed:  00:00:22
  Start:  Fri May 10 11:01:17 2013   End:  Fri May 10 11:01:39 2013

GO:0045214 "sarcomere organization" evidence=IEA

GO:0034614 "cellular response to reactive oxygen species" evidence=IEA

GO:0032587 "ruffle membrane" evidence=IEA

GO:0032059 "bleb" evidence=IEA

GO:0008092 "cytoskeletal protein binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0001725 "stress fiber" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9SJ12	ATP7_ARATH	No assigned EC number	0.7166	1.0	0.9958	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	239
PLN02744	539	PLN02744, PLN02744, dihydrolipoyllysine-residue ac	0.002

>gnl|CDD|215397 PLN02744, PLN02744, dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex

 Score = 38.7 bits (90), Expect = 0.002
 Identities = 19/47 (40%), Positives = 31/47 (65%)

Query: 2  AFASRLASKSKQLCSSQVILQRQHAISVRFFANEAAPQALKGDEMLK 48
          A+ASR+ + SK+L +   +L+R+HA  VR+F+N       KGD++ K
Sbjct: 1  AYASRIINHSKKLRNVSNLLRREHAALVRYFSNSTRSSLGKGDDIAK 47

Length = 539

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	239
PLN02744	539	dihydrolipoyllysine-residue acetyltransferase comp	85.59

>PLN02744 dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex

Probab=85.59  E-value=0.31  Score=48.91  Aligned_cols=47  Identities=40%  Similarity=0.632  Sum_probs=43.6

Q ss_pred             hhhhhhhhhhhhhhhhHHHHhhccchhHHhhhhhcCCccCcchHHHH
Q 026384            2 AFASRLASKSKQLCSSQVILQRQHAISVRFFANEAAPQALKGDEMLK   48 (239)
Q Consensus         2 a~~~r~~srs~~~~~~~~~~~~~~~~~vR~fA~~Aap~~~kGdd~lK   48 (239)
                      +++||++..|+.|+....+|...|+..||+|+....+...+||++.+
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   47 (539)
T PLN02744          1 AYASRIINHSKKLRNVSNLLRREHAALVRYFSNSTRSSLGKGDDIAK   47 (539)
T ss_pred             CchHHHhhhchhhcchHHHhcccccceEEEecCCCccCcccccchhh
Confidence            57899999999999999999999999999999998888889999855

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	239
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 48.3 bits (114), Expect = 1e-06
 Identities = 34/250 (13%), Positives = 70/250 (28%), Gaps = 72/250 (28%)

Query: 12  KQLCSSQVILQRQHAISVRF--------FANEAAPQALKGDEMLKNIFLDVKKKFETALG 63
           K   +  V     + +  +           N  +P+ +   EML+ +   +   +     
Sbjct: 163 KTWVALDVC--LSYKVQCKMDFKIFWLNLKNCNSPETVL--EMLQKLLYQIDPNW----- 213

Query: 64  VLRKEKITIAPEDPAAVSQYANVMKTVREKADLFSESQ-RIAYTI--ETRTAGIPDA--- 117
                  T   +  + +    + ++   E   L           +    + A   +A   
Sbjct: 214 -------TSRSDHSSNIKLRIHSIQA--ELRRLLKSKPYENCLLVLLNVQNAKAWNAFNL 264

Query: 118 --RTYLLTLKEIRERGLIDEHGAEAMMMDALEKVEKEIKKPLMRNDKKGMALLTAEFDKI 175
             +  L T    R + + D   A      +L+         L     +  +LL       
Sbjct: 265 SCKILLTT----RFKQVTDFLSAATTTHISLD----HHSMTL--TPDEVKSLLL------ 308

Query: 176 NKKLGIRKEDLPKYEEQ---LELKIAKA------------------QLEELKKDALEAME 214
            K L  R +DLP+         L I                     +L  + + +L  +E
Sbjct: 309 -KYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLE 367

Query: 215 TQKKREEFKD 224
             + R+ F  
Sbjct: 368 PAEYRKMFDR 377

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 39.5 bits (91), Expect = 8e-04
 Identities = 42/240 (17%), Positives = 72/240 (30%), Gaps = 52/240 (21%)

Query: 39  QALKGDEMLKNIFLDVKKKFETALGVLRKEKITIAPEDPAAVSQYANVMKTVREK----- 93
            A   +        D K   +    +L KE+I        AVS    +  T+  K     
Sbjct: 27  DAFVDN-------FDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMV 79

Query: 94  ADLFSESQRIAY-----TIETRTAGIPDARTYLLTLKEIRERGLIDEHGAEAMMMDALEK 148
                E  RI Y      I+T     P   T +    E R+R   D        +  L+ 
Sbjct: 80  QKFVEEVLRINYKFLMSPIKTEQRQ-PSMMTRMYI--EQRDRLYNDNQVFAKYNVSRLQP 136

Query: 149 VEKEIKKPL--MRNDKK----GM--------ALLTAEFDKINKKL--GI---------RK 183
             K +++ L  +R  K     G+        AL      K+  K+   I           
Sbjct: 137 YLK-LRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSP 195

Query: 184 EDLPKYEEQLELKIAKAQLEELKKDALEAMETQKKREEFKD--EEMVEVKSL----DVRN 237
           E + +  ++L  +I           +   +     + E +   +       L    +V+N
Sbjct: 196 ETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQN 255

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00