Citrus Sinensis ID: 026389

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------24
Protein Sequence
MTPSSNPPPTTGSSSKRCVPVCSGIVLSCLLAFTLQIFFFSPISPDLLLLPPASSASLIPTTSDIQSVTRLGEGILNGPEDVCVDRNGVLYTATRDGWIKRLHKNGTWENWKLIGGDTLLGITTTQENEILVCDADKGLLKVTEEGVTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCETFK
Secondary Structure (PSIPRED)
ccccccccccccccccccHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccEEcccccccccccEEEcccccEEEEccccEEEEEEccccEEEEEEEcccccccEEEcccccEEEEEccccEEEEEcccEEEEEEcccccEEEEcccEEEcccccEEEEcccccccccHHHHHHcccccccEEEEEEcccccEEEEccccccccEEEEcccccEEEEEEccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHHccccccccccEEEcccccEEEEccccEEEEEcccccEEEEEEccccccccEEEcccccEEEEEccccEEEEcccccEEEEEccccccEEEccccEEccccEEEEEcccccccHHHHHHHHHccccccEEEEEcccccEEEEEEccccccccEEEcccccEEEEEEccc
Coil and Loop (DISEMBL)
mtpssnpppttgssskrcvpvcSGIVLSCLLAFTLQIfffspispdllllppassaslipttsdiqsvtrlgegilngpedvcvdrngvlytaTRDGWIKRlhkngtwenwkliggdtllgitttqeneILVCDADKGLLKVTEEGVTVLASHvngsrinlADDLIAATDGSIYFSVASTKfglhnwgldlleakphgkllkydpslnetSILLDSLFFANgvalskdedYLVVCETFK
Flexible Loop (DISEMBL)
mtpssnpppttgssskrcvPVCSGIVLSCLLAFTLQIFFFSPISPDLLLLPPASSASLIPTTSDIQSVTRLGegilngpedvcvDRNGVLYTatrdgwikrlhkngtwenwklIGGDTLLGITTTQENEILVCDADKGLLKVTEEGVTVLashvngsriNLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCETFK
Low Complexity Region (SEG)
MtpssnpppttgsssKRCVPVCSGIVLSCLLAFTLQIFFFspispdllllppassaslipTTSDIQSVTRLGEGILNGPEDVCVDRNGVLYTATRDGWIKRLHKNGTWENWKliggdtllgitttQENEILVCDADKGLLKVTEEGVTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCETFK
Disordered region (IsUnstruct)
*****************CVPVCSGIVLSCLLAFTLQIFFFSPISPDLLLLPPASSASLIPTTSDIQSVTRLGEGILNGPEDVCVDRNGVLYTATRDGWIKRLHKNGTWENWKLIGGDTLLGITTTQENEILVCDADKGLLKVTEEGVTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCET**
Disordered Region (DISOPRED)
********************VCSGIVLSCLLAFTLQIFFFSPISPDLLLLPPASSASLIPTTSDIQSVTRLGEGILNGPEDVCVDRNGVLYTATRDGWIKRLHKNGTWENWKLIGGDTLLGITTTQENEILVCDADKGLLKVTEEGVTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCETFK
Disordered Region (DISEMBL)
****************RCVPVCSGIVLSCLLAFTLQIFFFSPISPDLLLLPPASSASLIPTTSDIQSVTRLGEGILNGPEDVCVDRNGVLYTATRDGWIKRLHKNGTWENWKLIGGDTLLGITTTQENEILVCDADKGLLKVTEEGVTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCETFK
Disordered Region (DISPRO)
***************KRCVPVCSGIVLSCLLAFTLQIFFFSPISPDLLLLPPASSASLIPTTSDIQSVTRLGEGILNGPEDVCVDRNGVLYTATRDGWIKRLHKNGTWENWKLIGGDTLLGITTTQENEILVCDADKGLLKVTEEGVTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCETFK
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MTPSSNPPPTTGSSSKRCVPVCSGIVLSCLLAFTLQIFFFSPISPDLLLLPPASSASLIPTTSDIQSVTRLGEGILNGPEDVCVDRNGVLYTATRDGWIKRLHKNGTWENWKLIGGDTLLGITTTQENEILVCDADKGLLKVTEEGVTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCETFK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	239	2.2.26 [Sep-21-2011]
Q9D7N9	415	Adipocyte plasma membrane	yes	no	0.953	0.549	0.330	1e-20
Q7TP48	376	Adipocyte plasma membrane	yes	no	0.811	0.515	0.345	2e-20
Q3T0E5	412	Adipocyte plasma membrane	yes	no	0.962	0.558	0.320	7e-19
Q9HDC9	416	Adipocyte plasma membrane	yes	no	0.811	0.466	0.336	2e-17
B5X3B2	416	Adipocyte plasma membrane	N/A	no	0.803	0.461	0.340	5e-16
Q5ZIF1	415	Adipocyte plasma membrane	yes	no	0.803	0.462	0.322	3e-15
Q803F5	415	Adipocyte plasma membrane	no	no	0.807	0.465	0.284	1e-13
P92976	329	Strictosidine synthase 3	no	no	0.682	0.495	0.272	3e-05
P68175	344	Strictosidine synthase OS	N/A	no	0.581	0.404	0.288	4e-05
P68174	342	Strictosidine synthase (F	N/A	no	0.581	0.406	0.288	4e-05

>sp|Q9D7N9|APMAP_MOUSE Adipocyte plasma membrane-associated protein OS=Mus musculus GN=Apmap PE=1 SV=1

 Score = 99.8 bits (247), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 84/254 (33%), Positives = 123/254 (48%), Gaps = 26/254 (10%)

Query: 7   PPPTTGSSSKRCVPVCSGIVLSCLLAFTL---QIFFFSPISPDLLLL--PPASSASLIPT 61
           P    GSS    V   + ++L+  LA  L    +   SPI P       PP     L P 
Sbjct: 25  PEVKEGSSFSGRVFRMTFLMLAVSLAIPLLGAMMLLESPIDPQSFSFKEPPFMFGVLHPN 84

Query: 62  TSDIQSVTRLGEGILNGPEDVCVDRNGVLYTATRDGWIKRLHKNGTWENWKLIGGDTL-- 119
           T  ++   RL E  L+GPE + V+   VL+T T DG + +L +NG  E     G      
Sbjct: 85  TK-LRQAERLFENQLSGPESI-VNIGDVLFTGTADGRVVKL-ENGEIETIARFGSGPCKT 141

Query: 120 ----------LGITTTQENEILVCDADKGLLKVTEEGVTV---LASH--VNGSRINLADD 164
                     LGI       + V DA KGL +V  +  +V   L+S   + G +++  +D
Sbjct: 142 RDDEPTCGRPLGIRAGPNGTLFVVDAYKGLFEVNPQKRSVKLLLSSETPIEGKKMSFVND 201

Query: 165 LIAATDG-SIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGV 223
           L    DG  IYF+ +S+K+   ++ L ++EA   G+LL+YD    E  +LLD L F NGV
Sbjct: 202 LTVTRDGRKIYFTDSSSKWQRRDYLLLVMEATDDGRLLEYDTVTKEVKVLLDQLQFPNGV 261

Query: 224 ALSKDEDYLVVCET 237
            LS +ED+++V ET
Sbjct: 262 QLSPEEDFVLVAET 275

Exhibits strong arylesterase activity with beta-naphthyl acetate and phenyl acetate (By similarity). May play a role in adipocyte differentiation.
Mus musculus (taxid: 10090)

>sp|Q7TP48|APMAP_RAT Adipocyte plasma membrane-associated protein OS=Rattus norvegicus GN=Apmap PE=2 SV=2

 Score = 99.4 bits (246), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 75/217 (34%), Positives = 108/217 (49%), Gaps = 23/217 (10%)

Query: 41  SPISPDLLLL--PPASSASLIPTTSDIQSVTRLGEGILNGPEDVCVDRNGVLYTATRDGW 98
           SPI P       PP     L P T  ++   RL E  LNGPE + V+   VL+T T DG 
Sbjct: 23  SPIDPQSFSFKEPPFMFGVLQPNTK-LRQAERLFENQLNGPESI-VNIGDVLFTGTADGR 80

Query: 99  IKRLHKNGTWENWKLIGGDTL------------LGITTTQENEILVCDADKGLLKVTEEG 146
           + +L +NG  E     G                LGI       + V DA KGL +V  + 
Sbjct: 81  VVKL-ENGEIETIARFGSGPCKTRDDEPTCGRPLGIRVGPNGTLFVVDAYKGLFEVNPQK 139

Query: 147 VTV---LASH--VNGSRINLADDLIAATDG-SIYFSVASTKFGLHNWGLDLLEAKPHGKL 200
            +V   L+S   + G +++  +DL    DG  IYF+ +S+K+   ++ L ++E    G+L
Sbjct: 140 RSVKLLLSSETPIEGKKMSFVNDLTITRDGRKIYFTDSSSKWQRRDYLLLVMEGTDDGRL 199

Query: 201 LKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCET 237
           L+YD    E  +LLD L F NGV LS +ED+++V ET
Sbjct: 200 LEYDTVTKEVKVLLDQLQFPNGVQLSPEEDFVLVAET 236

Exhibits strong arylesterase activity with beta-naphthyl acetate and phenyl acetate. May play a role in adipocyte differentiation.

Rattus norvegicus (taxid: 10116)

>sp|Q3T0E5|APMAP_BOVIN Adipocyte plasma membrane-associated protein OS=Bos taurus GN=APMAP PE=2 SV=1

 Score = 94.0 bits (232), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 82/256 (32%), Positives = 119/256 (46%), Gaps = 26/256 (10%)

Query: 4   SSNPPPTTGSSSKRCVPVCSGIVLSCLLAFTLQ---IFFFSPISPDLLLL--PPASSASL 58
           +  P    GSS    V   + ++L+  L   L    +   SPI P+ L    PP     L
Sbjct: 22  NRTPEAKGGSSFSGRVFRATFLMLAAFLTIPLLGALVLLDSPIDPEPLSFKEPPLFLGVL 81

Query: 59  IPTTSDIQSVTRLGEGILNGPEDVCVDRNGVLYTATRDGWIKRLHKNGTWENWKLIGGDT 118
            P T  +Q   RL E  L GPE +  +   V++T T DG + +L +NG  E     G   
Sbjct: 82  QPNTK-LQQAERLFENQLVGPESIA-NIGDVMFTGTADGRVVKL-ENGEVETIARFGSGP 138

Query: 119 L------------LGITTTQENEILVCDADKGLLKVT--EEGVTVLASH---VNGSRINL 161
                        LGI       + V DA KGL +V   +  V +L S    + G +++ 
Sbjct: 139 CKTRDDEPACGRPLGIRAGPNGTLFVVDAYKGLFEVNPWKREVKLLLSSETPIEGRKMSF 198

Query: 162 ADDLIAATDG-SIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFA 220
            +DL    DG  IYF+ +S+K+   ++ L L+E    G+LL+YD    E  +LLD L F 
Sbjct: 199 LNDLTVTRDGRKIYFTDSSSKWQRRDYLLLLMEGTDDGRLLEYDTQTKEVKVLLDHLRFP 258

Query: 221 NGVALSKDEDYLVVCE 236
           NGV LS  ED+++V E
Sbjct: 259 NGVQLSPAEDFVLVVE 274

Exhibits strong arylesterase activity with beta-naphthyl acetate and phenyl acetate. May play a role in adipocyte differentiation.

Bos taurus (taxid: 9913)

>sp|Q9HDC9|APMAP_HUMAN Adipocyte plasma membrane-associated protein OS=Homo sapiens GN=APMAP PE=1 SV=2

 Score = 89.4 bits (220), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 73/217 (33%), Positives = 103/217 (47%), Gaps = 23/217 (10%)

Query: 41  SPISPDLLLL--PPASSASLIPTTSDIQSVTRLGEGILNGPEDVCVDRNGVLYTATRDGW 98
           SPI P  L    PP     L P T  ++   RL E  L GPE +      V++T T DG 
Sbjct: 63  SPIDPQPLSFKEPPLLLGVLHPNTK-LRQAERLFENQLVGPESIA-HIGDVMFTGTADGR 120

Query: 99  IKRLHKNGTWENWKLIGGDTL------------LGITTTQENEILVCDADKGLLKVT--E 144
           + +L +NG  E     G                LGI       + V DA KGL +V   +
Sbjct: 121 VVKL-ENGEIETIARFGSGPCKTRDDEPVCGRPLGIRAGPNGTLFVADAYKGLFEVNPWK 179

Query: 145 EGVTVLASH---VNGSRINLADDLIAATDG-SIYFSVASTKFGLHNWGLDLLEAKPHGKL 200
             V +L S    + G  ++  +DL    DG  IYF+ +S+K+   ++ L ++E    G+L
Sbjct: 180 REVKLLLSSETPIEGKNMSFVNDLTVTQDGRKIYFTDSSSKWQRRDYLLLVMEGTDDGRL 239

Query: 201 LKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCET 237
           L+YD    E  +LLD L F NGV LS  ED+++V ET
Sbjct: 240 LEYDTVTREVKVLLDQLRFPNGVQLSPAEDFVLVAET 276

Exhibits strong arylesterase activity with beta-naphthyl acetate and phenyl acetate. May play a role in adipocyte differentiation.

Homo sapiens (taxid: 9606)

>sp|B5X3B2|APMAP_SALSA Adipocyte plasma membrane-associated protein OS=Salmo salar GN=apmap PE=2 SV=1

 Score = 84.7 bits (208), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 75/220 (34%), Positives = 110/220 (50%), Gaps = 28/220 (12%)

Query: 41  SPISPDLLLL--PPASSASLIPTTSDIQSVTRLGEGILNGPEDVCVDRNGVLYTATRDGW 98
           SPI P+LL L  PP  S    P    ++   RL E  L GPE +  +   ++YT T DG 
Sbjct: 62  SPIHPELLSLSEPPLMSGCYEPNFK-LREAQRLFEDQLVGPESIA-NFGDLIYTGTADGK 119

Query: 99  I-----------KRLHK---NGTWENWKLIGGDTLLGITTTQENEILVCDADKGLLKV-- 142
           I            RL K   +G+ E     G    LGI       + V DA  GL KV  
Sbjct: 120 IVKIEGKSITVIARLGKPPCDGSREQEPSCG--RPLGIRVGPNGTLFVADAYLGLFKVNP 177

Query: 143 -TEEGVTVLAS---HVNGSRINLADDLIAATDG-SIYFSVASTKFGLHNWGLDLLEAKPH 197
            T E VT L S    V G R++  +DL    DG  +YF+ +S+++   ++   ++EA   
Sbjct: 178 VTGE-VTNLVSAGQMVGGRRLSFVNDLDVTQDGRKVYFTDSSSRWQRRDYLHLIMEATAD 236

Query: 198 GKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCET 237
           G++L+YD    E ++L+++L FANG+ L  DE+ ++V ET
Sbjct: 237 GRVLEYDTETKEVTVLMENLRFANGIQLFPDEESVLVAET 276

Salmo salar (taxid: 8030)

>sp|Q5ZIF1|APMAP_CHICK Adipocyte plasma membrane-associated protein OS=Gallus gallus GN=APMAP PE=2 SV=1

 Score = 82.0 bits (201), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 70/217 (32%), Positives = 106/217 (48%), Gaps = 25/217 (11%)

Query: 42  PISPDLLLL--PPASSASLIPTTSDIQSVTRLGEGILNGPEDVCVDRNGVLYTATRDGWI 99
           PI P  + L  PP  +  L P  + +Q   RL E  L GPE + V+   VL+T T DG I
Sbjct: 63  PIDPQPISLKEPPLLTGVLEPN-NKLQKAERLWENQLVGPESI-VNIGDVLFTGTADGKI 120

Query: 100 KRLHKN-------------GTWENWKLIGGDTLLGITTTQENEILVCDADKGLLKV---T 143
            ++                GT E+    G    LGI     N + V DA  GL +V   T
Sbjct: 121 LKIEDGEVQTVARIGHGPCGTPEDEPTCGRP--LGIRVGPNNTLFVADAYYGLYEVNPGT 178

Query: 144 EEGVTVLASH--VNGSRINLADDLIAATDG-SIYFSVASTKFGLHNWGLDLLEAKPHGKL 200
            E   ++++   + G +++  +DL    DG  IYF+ +S+K+   ++   ++E    G+L
Sbjct: 179 GETKMLVSTKTLIEGQKLSFLNDLTVTQDGRKIYFTDSSSKWQRRDFLFLVMEGTDDGRL 238

Query: 201 LKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCET 237
           L+YD    E  +L+  L F NGV LS  ED+++V ET
Sbjct: 239 LEYDTVTKEVKVLMVGLRFPNGVQLSPAEDFVLVLET 275

Gallus gallus (taxid: 9031)

>sp|Q803F5|APMAP_DANRE Adipocyte plasma membrane-associated protein OS=Danio rerio GN=apmap PE=2 SV=1

 Score = 77.0 bits (188), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 62/218 (28%), Positives = 106/218 (48%), Gaps = 25/218 (11%)

Query: 41  SPISPDLLLL--PPASSASLIPTTSDIQSVTRLGEGILNGPEDVCVDRNGVLYTATRDGW 98
           SPI P++  L  PP  +    P    ++   RL E  L GPE +  +   V YT T DG 
Sbjct: 62  SPIQPEVFSLNEPPLMTGCYEPNLK-LRQAERLFEERLVGPESLA-NIGDVFYTGTADGK 119

Query: 99  IKRLHKN-------------GTWENWKLIGGDTLLGITTTQENEILVCDADKGLLKV--- 142
           I ++                G+ E+    G    LGI       + V DA  GL +V   
Sbjct: 120 IVKIEGRNIHVLATIGKPPCGSREHEHTCGRP--LGIRVGPNGTLFVADAYLGLFEVNPV 177

Query: 143 TEEGVTVLAS--HVNGSRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGK 199
           T E  +++++   + G R+   +DL    DG  +YF+ +S+++   ++   ++EA   G+
Sbjct: 178 TGEVKSLVSTEKRIAGRRLGFVNDLDVTQDGKKVYFTDSSSRWQRRDFMHLIMEATADGR 237

Query: 200 LLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCET 237
           +L+YD    E ++++++L F NG+ L  DE+ ++V ET
Sbjct: 238 VLEYDTETKEVNVMMENLRFPNGIQLFPDEESVLVAET 275

Danio rerio (taxid: 7955)

>sp|P92976|STS3_ARATH Strictosidine synthase 3 OS=Arabidopsis thaliana GN=SS3 PE=2 SV=2

 Score = 49.3 bits (116), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 51/187 (27%), Positives = 75/187 (40%), Gaps = 24/187 (12%)

Query: 74  GILNGPEDVCVDRNGV-LYTATRDGWI-KRLHKNGTWENWKLIGG------DTLLGITT- 124
           G   GPE    D  G   YT    G I K L K G  +  ++         D  LG T  
Sbjct: 36  GNRTGPEAFAFDSTGKGFYTGVTGGKILKYLPKKGYVDFAQITNSSKSSLCDGALGTTNV 95

Query: 125 ------------TQENEILVCDADKGLLKVTEEG--VTVLASHVNGSRINLADDL-IAAT 169
                       T+  ++ V DA  GL  +   G     +A  V G      D L +  T
Sbjct: 96  EKCGRPAGIAFNTKTGDLYVADAALGLHVIPRRGGLAKKIADSVGGKPFLFLDGLDVDPT 155

Query: 170 DGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDE 229
            G +YF+  S+ FG  +    +      GK  KYDPS    ++L++ L  + G A+S D 
Sbjct: 156 TGVVYFTSFSSTFGPRDVLKAVATKDSTGKFFKYDPSKKVVTVLMEGLSGSAGCAVSSDG 215

Query: 230 DYLVVCE 236
            +++V +
Sbjct: 216 SFVLVGQ 222

Catalyzes the stereospecific condensation of tryptamine with secologanin to form strictosidine, the key intermediate of indole alkaloid biosynthesis.

Arabidopsis thaliana (taxid: 3702)

EC: 4

EC: .

EC: 3

EC: .

EC: 3

EC: .

EC: 2

>sp|P68175|STSY_RAUSE Strictosidine synthase OS=Rauvolfia serpentina GN=STR1 PE=1 SV=1

 Score = 48.9 bits (115), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 41/142 (28%), Positives = 63/142 (44%), Gaps = 3/142 (2%)

Query: 98  WIKRLHKNGTWENWKLIGGDTLLGITTTQENEILVCDADKGLLKVTEEG--VTVLASHVN 155
           W K   +N T    + + G T       Q N++ + D    L  V  EG   T LA+ V+
Sbjct: 84  WNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVDCYYHLSVVGSEGGHATQLATSVD 143

Query: 156 GSRIN-LADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILL 214
           G     L    +    G +YF+  ST +        +  +   G+L+KYDPS  ET++LL
Sbjct: 144 GVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLL 203

Query: 215 DSLFFANGVALSKDEDYLVVCE 236
             L    G  +S D  +++V E
Sbjct: 204 KELHVPGGAEVSADSSFVLVAE 225

Catalyzes the stereospecific condensation of tryptamine with secologanin to form strictosidine, the key intermediate of indole alkaloid biosynthesis.

Rauvolfia serpentina (taxid: 4060)

EC: 4

EC: .

EC: 3

EC: .

EC: 3

EC: .

EC: 2

>sp|P68174|STSY_RAUMA Strictosidine synthase (Fragment) OS=Rauvolfia mannii GN=STR1 PE=3 SV=1

 Score = 48.9 bits (115), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 41/142 (28%), Positives = 63/142 (44%), Gaps = 3/142 (2%)

Query: 98  WIKRLHKNGTWENWKLIGGDTLLGITTTQENEILVCDADKGLLKVTEEG--VTVLASHVN 155
           W K   +N T    + + G T       Q N++ + D    L  V  EG   T LA+ V+
Sbjct: 82  WNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVDCYYHLSVVGSEGGHATQLATSVD 141

Query: 156 GSRIN-LADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILL 214
           G     L    +    G +YF+  ST +        +  +   G+L+KYDPS  ET++LL
Sbjct: 142 GVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLL 201

Query: 215 DSLFFANGVALSKDEDYLVVCE 236
             L    G  +S D  +++V E
Sbjct: 202 KELHVPGGAEVSADSSFVLVAE 223

Catalyzes the stereospecific condensation of tryptamine with secologanin to form strictosidine, the key intermediate of indole alkaloid biosynthesis.

Rauvolfia mannii (taxid: 4062)

EC: 4

EC: .

EC: 3

EC: .

EC: 3

EC: .

EC: 2

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	239
225444698	650	PREDICTED: adipocyte plasma membrane-ass	0.941	0.346	0.688	3e-88
297738547	461	unnamed protein product [Vitis vinifera]	0.941	0.488	0.688	5e-88
225444700	368	PREDICTED: adipocyte plasma membrane-ass	0.941	0.611	0.693	1e-87
255550417	356	Adipocyte plasma membrane-associated pro	0.924	0.620	0.642	3e-81
297738546	382	unnamed protein product [Vitis vinifera]	0.916	0.573	0.662	5e-81
225444696	365	PREDICTED: adipocyte plasma membrane-ass	0.916	0.6	0.662	5e-81
388499476	372	unknown [Medicago truncatula]	0.970	0.623	0.608	2e-78
357450079	372	Adipocyte plasma membrane-associated pro	0.970	0.623	0.608	3e-78
388511010	369	unknown [Lotus japonicus]	0.953	0.617	0.594	9e-76
357450071	360	Adipocyte plasma membrane-associated pro	0.907	0.602	0.619	2e-73

>gi|225444698|ref|XP_002277787.1| PREDICTED: adipocyte plasma membrane-associated protein-like [Vitis vinifera]

 Score =  330 bits (846), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 155/225 (68%), Positives = 188/225 (83%)

Query: 15  SKRCVPVCSGIVLSCLLAFTLQIFFFSPISPDLLLLPPASSASLIPTTSDIQSVTRLGEG 74
           SK C+  CS   L+  LAFTLQI+FFSPISPD L LP  S+    PT++ +Q V ++GEG
Sbjct: 292 SKHCLQACSSFALASTLAFTLQIYFFSPISPDPLHLPHVSATLNYPTSNKLQEVAKIGEG 351

Query: 75  ILNGPEDVCVDRNGVLYTATRDGWIKRLHKNGTWENWKLIGGDTLLGITTTQENEILVCD 134
           +L+ PEDVC D  G+LYTATRDGWIKRLH+NG+WE+W+LIGGDTLLG+TTT+   I+VCD
Sbjct: 352 LLDKPEDVCFDGEGILYTATRDGWIKRLHRNGSWEDWRLIGGDTLLGVTTTRTGGIVVCD 411

Query: 135 ADKGLLKVTEEGVTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEA 194
             KGLLKV E+GV++L SHVNGS I  ADD+I A+DGS+YFSVAS+KFGLH+W LD+LEA
Sbjct: 412 TQKGLLKVGEDGVSLLTSHVNGSEIRFADDVIEASDGSLYFSVASSKFGLHDWYLDVLEA 471

Query: 195 KPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCETFK 239
           KPHG+LLKYDP LNETSILLD+L FANGVALS+DED+LVVCET+K
Sbjct: 472 KPHGQLLKYDPLLNETSILLDNLAFANGVALSQDEDFLVVCETWK 516

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297738547|emb|CBI27792.3| unnamed protein product [Vitis vinifera]

 Score =  329 bits (844), Expect = 5e-88,   Method: Compositional matrix adjust.
 Identities = 155/225 (68%), Positives = 188/225 (83%)

Query: 15  SKRCVPVCSGIVLSCLLAFTLQIFFFSPISPDLLLLPPASSASLIPTTSDIQSVTRLGEG 74
           SK C+  CS   L+  LAFTLQI+FFSPISPD L LP  S+    PT++ +Q V ++GEG
Sbjct: 103 SKHCLQACSSFALASTLAFTLQIYFFSPISPDPLHLPHVSATLNYPTSNKLQEVAKIGEG 162

Query: 75  ILNGPEDVCVDRNGVLYTATRDGWIKRLHKNGTWENWKLIGGDTLLGITTTQENEILVCD 134
           +L+ PEDVC D  G+LYTATRDGWIKRLH+NG+WE+W+LIGGDTLLG+TTT+   I+VCD
Sbjct: 163 LLDKPEDVCFDGEGILYTATRDGWIKRLHRNGSWEDWRLIGGDTLLGVTTTRTGGIVVCD 222

Query: 135 ADKGLLKVTEEGVTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEA 194
             KGLLKV E+GV++L SHVNGS I  ADD+I A+DGS+YFSVAS+KFGLH+W LD+LEA
Sbjct: 223 TQKGLLKVGEDGVSLLTSHVNGSEIRFADDVIEASDGSLYFSVASSKFGLHDWYLDVLEA 282

Query: 195 KPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCETFK 239
           KPHG+LLKYDP LNETSILLD+L FANGVALS+DED+LVVCET+K
Sbjct: 283 KPHGQLLKYDPLLNETSILLDNLAFANGVALSQDEDFLVVCETWK 327

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225444700|ref|XP_002277807.1| PREDICTED: adipocyte plasma membrane-associated protein [Vitis vinifera] gi|297738548|emb|CBI27793.3| unnamed protein product [Vitis vinifera]

 Score =  328 bits (840), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 156/225 (69%), Positives = 186/225 (82%)

Query: 15  SKRCVPVCSGIVLSCLLAFTLQIFFFSPISPDLLLLPPASSASLIPTTSDIQSVTRLGEG 74
           SK+ +  CS  VL+ +LA TLQI+FFSPISPD L LPP S+A  +PT + +Q VT++GEG
Sbjct: 10  SKQHLQTCSSFVLASILASTLQIYFFSPISPDPLHLPPVSAAINLPTNNKLQEVTKIGEG 69

Query: 75  ILNGPEDVCVDRNGVLYTATRDGWIKRLHKNGTWENWKLIGGDTLLGITTTQENEILVCD 134
            LN PED+C D  G+LYTATRDGWIKRLH+NG+WE+WKLIGG  LLGITT +   I VCD
Sbjct: 70  FLNKPEDLCFDEEGILYTATRDGWIKRLHRNGSWEDWKLIGGYALLGITTARAGGIFVCD 129

Query: 135 ADKGLLKVTEEGVTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEA 194
           A KGLLKV E+GV+ L SHVNGS I  ADD+I A+DGS+YFSVAS+KFGLH+W LDLLEA
Sbjct: 130 AQKGLLKVGEDGVSFLTSHVNGSEIRFADDVIEASDGSLYFSVASSKFGLHHWYLDLLEA 189

Query: 195 KPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCETFK 239
           KPHG+LLKYDP LNETSI+LD+L F NGVALS+DED+LVVCET+K
Sbjct: 190 KPHGQLLKYDPLLNETSIILDNLAFPNGVALSQDEDFLVVCETWK 234

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255550417|ref|XP_002516259.1| Adipocyte plasma membrane-associated protein, putative [Ricinus communis] gi|223544745|gb|EEF46261.1| Adipocyte plasma membrane-associated protein, putative [Ricinus communis]

 Score =  307 bits (786), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 144/224 (64%), Positives = 176/224 (78%), Gaps = 3/224 (1%)

Query: 16  KRCVPVCSGIVLSCLLAFTLQIFFFSPISPDLLLLPPASSASLIPTTSDIQSVTRLGEGI 75
           K C   C  +V+ CLLAF  QI++FSPISPDLL LP   +   +P    +Q V +LGEG 
Sbjct: 2   KACARTCLSVVVVCLLAFIFQIYYFSPISPDLLQLP---APFFLPPNKQLQEVIKLGEGF 58

Query: 76  LNGPEDVCVDRNGVLYTATRDGWIKRLHKNGTWENWKLIGGDTLLGITTTQENEILVCDA 135
           + GPEDVC+D++GVLYTA RD WIKR+HKNG+WENWK I  D LLGI  ++E  ++VCDA
Sbjct: 59  IQGPEDVCMDKDGVLYTAVRDKWIKRMHKNGSWENWKRIDSDALLGIAPSKEGGLIVCDA 118

Query: 136 DKGLLKVTEEGVTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAK 195
           D GLLKVTE+GVTVLAS VNGS+I  ADD I ++DG+IYFSV STKFGLHNW LD+LEA+
Sbjct: 119 DTGLLKVTEDGVTVLASEVNGSKIKFADDAIESSDGNIYFSVPSTKFGLHNWYLDVLEAR 178

Query: 196 PHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCETFK 239
           PHG+LLKYDP+ N+TS+LLD L F NGVALS +EDYLV CE++K
Sbjct: 179 PHGQLLKYDPTSNQTSVLLDGLCFPNGVALSWEEDYLVFCESWK 222

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297738546|emb|CBI27791.3| unnamed protein product [Vitis vinifera]

 Score =  306 bits (784), Expect = 5e-81,   Method: Compositional matrix adjust.
 Identities = 147/222 (66%), Positives = 184/222 (82%), Gaps = 3/222 (1%)

Query: 18  CVPVCSGIVLSCLLAFTLQIFFFSPISPDLLLLPPASSASLIPTTSDIQSVTRLGEGILN 77
           C+   S ++L+C+LA  LQIF FSPISPDLL LP  SSA+L+ T   +Q V ++GEG+L+
Sbjct: 30  CMRTSSTVILACILASALQIFLFSPISPDLLQLPQPSSAALL-TNKKLQEVAKIGEGLLD 88

Query: 78  GPEDVCVDRNGVLYTATRDGWIKRLHKNGTWENWKLIGGDTLLGITTTQENEILVCDADK 137
            PEDVC D  G+LYTATRDGWIKRLH+NG+WE+W+LIGG +L+G+T T+   I+VCD +K
Sbjct: 89  KPEDVCFDGEGILYTATRDGWIKRLHRNGSWEDWRLIGGGSLIGVTPTRTGGIIVCDIEK 148

Query: 138 GLLKVTEEGVTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPH 197
           GLLKV E+GV++L SHVNGS+I  A+D+I A DGS+YFSVAST+F   NW LD+LEAKPH
Sbjct: 149 GLLKVGEDGVSILTSHVNGSKIKFANDVIEAADGSVYFSVASTEF--VNWYLDVLEAKPH 206

Query: 198 GKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCETFK 239
           G+LLKYDP LNETSILLD+L FANGVALS+DED+LVVCET+K
Sbjct: 207 GQLLKYDPLLNETSILLDNLAFANGVALSQDEDFLVVCETWK 248

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225444696|ref|XP_002277770.1| PREDICTED: adipocyte plasma membrane-associated protein-like [Vitis vinifera]

 Score =  306 bits (784), Expect = 5e-81,   Method: Compositional matrix adjust.
 Identities = 147/222 (66%), Positives = 184/222 (82%), Gaps = 3/222 (1%)

Query: 18  CVPVCSGIVLSCLLAFTLQIFFFSPISPDLLLLPPASSASLIPTTSDIQSVTRLGEGILN 77
           C+   S ++L+C+LA  LQIF FSPISPDLL LP  SSA+L+ T   +Q V ++GEG+L+
Sbjct: 13  CMRTSSTVILACILASALQIFLFSPISPDLLQLPQPSSAALL-TNKKLQEVAKIGEGLLD 71

Query: 78  GPEDVCVDRNGVLYTATRDGWIKRLHKNGTWENWKLIGGDTLLGITTTQENEILVCDADK 137
            PEDVC D  G+LYTATRDGWIKRLH+NG+WE+W+LIGG +L+G+T T+   I+VCD +K
Sbjct: 72  KPEDVCFDGEGILYTATRDGWIKRLHRNGSWEDWRLIGGGSLIGVTPTRTGGIIVCDIEK 131

Query: 138 GLLKVTEEGVTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPH 197
           GLLKV E+GV++L SHVNGS+I  A+D+I A DGS+YFSVAST+F   NW LD+LEAKPH
Sbjct: 132 GLLKVGEDGVSILTSHVNGSKIKFANDVIEAADGSVYFSVASTEF--VNWYLDVLEAKPH 189

Query: 198 GKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCETFK 239
           G+LLKYDP LNETSILLD+L FANGVALS+DED+LVVCET+K
Sbjct: 190 GQLLKYDPLLNETSILLDNLAFANGVALSQDEDFLVVCETWK 231

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388499476|gb|AFK37804.1| unknown [Medicago truncatula]

 Score =  297 bits (760), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 143/235 (60%), Positives = 188/235 (80%), Gaps = 3/235 (1%)

Query: 5   SNPPPTTGSSSKRCVPVCSGIVLSCLLAFTLQIFFFSPISPDLLLLPPASSASLIPTTSD 64
           +NPP T G   K CV + S +VL+ L+A T+Q+F+FSPI P +L +P ++S+      + 
Sbjct: 6   TNPPSTLG---KYCVTLTSSLVLASLVALTVQVFYFSPIDPVILEIPSSASSPSSTKNNQ 62

Query: 65  IQSVTRLGEGILNGPEDVCVDRNGVLYTATRDGWIKRLHKNGTWENWKLIGGDTLLGITT 124
           +Q+V +LGEG L  PEDVCVD+NGVLYTATRDGWIKR+ +N  WENWK I   +LLGITT
Sbjct: 63  LQNVIKLGEGFLKQPEDVCVDKNGVLYTATRDGWIKRMVRNENWENWKHIDSSSLLGITT 122

Query: 125 TQENEILVCDADKGLLKVTEEGVTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGL 184
           +++  ++VCDA +GLLKVTE+G +V+ S VNGS++  ADD+I A+DG+IYFSV S KFGL
Sbjct: 123 SKDGGLIVCDASEGLLKVTEDGFSVILSQVNGSQLMFADDVIEASDGNIYFSVGSNKFGL 182

Query: 185 HNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCETFK 239
           H+W LDLLEA+PHG+LLKY+P+LNET I++D+L FANGVALSKDEDY+VVCET+K
Sbjct: 183 HDWYLDLLEARPHGQLLKYNPTLNETVIVIDNLTFANGVALSKDEDYVVVCETWK 237

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357450079|ref|XP_003595316.1| Adipocyte plasma membrane-associated protein [Medicago truncatula] gi|355484364|gb|AES65567.1| Adipocyte plasma membrane-associated protein [Medicago truncatula]

 Score =  297 bits (760), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 143/235 (60%), Positives = 188/235 (80%), Gaps = 3/235 (1%)

Query: 5   SNPPPTTGSSSKRCVPVCSGIVLSCLLAFTLQIFFFSPISPDLLLLPPASSASLIPTTSD 64
           +NPP T G   K CV + S +VL+ L+A T+Q+F+FSPI P +L +P ++S+      + 
Sbjct: 6   TNPPSTLG---KYCVTLTSSLVLASLVALTVQVFYFSPIDPVILEIPSSASSPSSTKNNQ 62

Query: 65  IQSVTRLGEGILNGPEDVCVDRNGVLYTATRDGWIKRLHKNGTWENWKLIGGDTLLGITT 124
           +Q+V +LGEG L  PEDVCVD+NGVLYTATRDGWIKR+ +N  WENWK I   +LLGITT
Sbjct: 63  LQNVIKLGEGFLKQPEDVCVDKNGVLYTATRDGWIKRMVRNENWENWKHIDSSSLLGITT 122

Query: 125 TQENEILVCDADKGLLKVTEEGVTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGL 184
           +++  ++VCDA +GLLKVTE+G +V+ S VNGS++  ADD+I A+DG+IYFSV S KFGL
Sbjct: 123 SKDGGLIVCDASEGLLKVTEDGFSVILSQVNGSQLMFADDVIEASDGNIYFSVGSNKFGL 182

Query: 185 HNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCETFK 239
           H+W LDLLEA+PHG+LLKY+P+LNET I++D+L FANGVALSKDEDY+VVCET+K
Sbjct: 183 HDWYLDLLEARPHGQLLKYNPTLNETVIVIDNLTFANGVALSKDEDYVVVCETWK 237

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388511010|gb|AFK43571.1| unknown [Lotus japonicus]

 Score =  288 bits (738), Expect = 9e-76,   Method: Compositional matrix adjust.
 Identities = 138/232 (59%), Positives = 177/232 (76%), Gaps = 4/232 (1%)

Query: 8   PPTTGSSSKRCVPVCSGIVLSCLLAFTLQIFFFSPISPDLLLLPPASSASLIPTTSDIQS 67
           P T   S+ +CV + S +VL+ L+A T+Q+F+FSPI P LL + PA S       + +Q+
Sbjct: 5   PTTQPFSTGKCVTLGSSLVLAALVALTVQVFYFSPIDPVLLDIAPAPSTK----NNKLQN 60

Query: 68  VTRLGEGILNGPEDVCVDRNGVLYTATRDGWIKRLHKNGTWENWKLIGGDTLLGITTTQE 127
           V++LGEG+L  PEDVC D  G LYT TRDGWIKRL +NG WENWK +    LLGIT  ++
Sbjct: 61  VSKLGEGLLKQPEDVCFDEEGTLYTTTRDGWIKRLRRNGNWENWKHVDSHALLGITAAKD 120

Query: 128 NEILVCDADKGLLKVTEEGVTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNW 187
             ++VCDA+KGLLKVTEEG +VLA+ VNGS +  ADD+I A+DG IYFS ASTKFG  NW
Sbjct: 121 GGLIVCDANKGLLKVTEEGFSVLATQVNGSPMRFADDVIEASDGDIYFSDASTKFGFGNW 180

Query: 188 GLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCETFK 239
            L++LEA+PHG++LKY+P  NET+I+LD+L FANGVALSKD+DYLVVCET+K
Sbjct: 181 YLEMLEARPHGRVLKYNPVSNETTIVLDNLAFANGVALSKDQDYLVVCETWK 232

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357450071|ref|XP_003595312.1| Adipocyte plasma membrane-associated protein [Medicago truncatula] gi|355484360|gb|AES65563.1| Adipocyte plasma membrane-associated protein [Medicago truncatula]

 Score =  281 bits (719), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 135/218 (61%), Positives = 177/218 (81%), Gaps = 1/218 (0%)

Query: 23  SGIVLSCLLAFTLQIFFFSPISPDLLLLPPASSASLIPTTSDIQSVTRLGEGILNGPEDV 82
           S +VL+ L+A T+Q+F+FSPI P +L +P A+S++     + +Q+V +LGEG L  PEDV
Sbjct: 9   SSLVLAALVALTVQVFYFSPIDPVILEIPSAASSTSSTKNNQLQNVIKLGEGFLKQPEDV 68

Query: 83  CVDRNGVLYTATRDGWIKRLHKNGTWENWKLIGGDTLLGITTTQENEILVCDADKGLLKV 142
           CVD++G+LYTATRDGWIKR+ +NG WENWK I   +LLGITT+++  ++VCDA KGLLKV
Sbjct: 69  CVDKDGILYTATRDGWIKRMVRNGNWENWKHIDSSSLLGITTSKDGGLIVCDATKGLLKV 128

Query: 143 T-EEGVTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLL 201
           T EEG +V+ S VNGS++  ADD+I A+DG+IYFSV STKFG+HNW LD+LEA+ HG+LL
Sbjct: 129 TEEEGFSVILSQVNGSQLMFADDVIEASDGNIYFSVPSTKFGMHNWYLDVLEARSHGQLL 188

Query: 202 KYDPSLNETSILLDSLFFANGVALSKDEDYLVVCETFK 239
           +Y+P  NET I+LD L FANGVALSKDEDYL+VCET+K
Sbjct: 189 RYNPLSNETVIVLDHLAFANGVALSKDEDYLLVCETWK 226

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	239
TAIR|locus:2081860	371	AT3G51440 [Arabidopsis thalian	0.698	0.450	0.373	1.3e-27
TAIR|locus:2081830	370	SSL4 "strictosidine synthase-l	0.694	0.448	0.348	3.5e-27
TAIR|locus:2081845	371	YLS2 "YELLOW-LEAF-SPECIFIC GEN	0.694	0.447	0.36	9.4e-27
TAIR|locus:2081875	371	AT3G51450 [Arabidopsis thalian	0.694	0.447	0.348	4e-26
ZFIN|ZDB-GENE-081022-75	432	zgc:194209 "zgc:194209" [Danio	0.468	0.259	0.333	8.1e-17
RGD|1308874	376	Apmap "adipocyte plasma membra	0.715	0.454	0.329	6.8e-16
UNIPROTKB|F1LLW3	386	RGD1308874 "Protein RGD1308874	0.715	0.443	0.329	7.5e-16
TAIR|locus:2097488	403	LAP3 "LESS ADHERENT POLLEN 3"	0.468	0.277	0.412	1.1e-15
UNIPROTKB|E2RPE9	415	APMAP "Uncharacterized protein	0.715	0.412	0.314	1.5e-14
FB|FBgn0015737	582	Hmu "Hemomucin" [Drosophila me	0.464	0.190	0.338	4.6e-14

TAIR|locus:2081860 AT3G51440 [Arabidopsis thaliana (taxid:3702)]

 Score = 309 (113.8 bits), Expect = 1.3e-27, P = 1.3e-27
 Identities = 65/174 (37%), Positives = 97/174 (55%)

Query:    71 LGEGILNGPEDVCV-DRNGVLYTATRDGWIKRLHK----NGTWENWKXXXXXXXXXXXXX 125
             +G G+LN PED+   + +G +YT   DGW+KR+      N +                  
Sbjct:    62 IGVGLLNSPEDIAYHEDSGFIYTGCVDGWVKRVKVAESVNDSLVEDLVNTGGRPLGIAFG 121

Query:   126 QENEILVCDADKGLLKVTEEG--VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFG 183
                E++V DA KGLL ++ +G    +L    +G R  L D +  A +G +YF+  S K+ 
Sbjct:   122 IHGEVIVADAYKGLLNISGDGKKTELLTEEADGVRFKLPDAVTVADNGVLYFTDGSYKYN 181

Query:   184 LHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCET 237
             LH +  D+LE KPHG+L+ +DP+   T +LL  L+FANGV+LS D+ +LV CET
Sbjct:   182 LHQFSFDILEGKPHGRLMSFDPTTKVTRVLLRDLYFANGVSLSPDQTHLVFCET 235

GO:0005576 "extracellular region" evidence=ISM

GO:0009058 "biosynthetic process" evidence=IEA

GO:0009821 "alkaloid biosynthetic process" evidence=ISS

GO:0016844 "strictosidine synthase activity" evidence=IEA;ISS;TAS

GO:0005783 "endoplasmic reticulum" evidence=IDA

TAIR|locus:2081830 SSL4 "strictosidine synthase-like 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 305 (112.4 bits), Expect = 3.5e-27, P = 3.5e-27
 Identities = 61/175 (34%), Positives = 100/175 (57%)

Query:    71 LGEGILNGPEDVCVDRNG-VLYTATRDGWIKRL--HKNGT---WENWKXXXXXXXXXXXX 124
             +G G+LN PED+   ++  ++YT   DGW+KR+  H +      E+W             
Sbjct:    62 IGVGLLNNPEDIAYHKDSNLIYTGCVDGWVKRVSVHDSANDSIVEDWVNTGGRPLGIAFG 121

Query:   125 XQENEILVCDADKGLLKVTEEG--VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKF 182
                 E++V DA+KGLL +++ G    +L    +G R  L D +  A +G +YF+ AS+K+
Sbjct:   122 LH-GEVIVADANKGLLSISDGGKKTELLTDEADGVRFKLTDAVTVADNGVLYFTDASSKY 180

Query:   183 GLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCET 237
               + +  D LE KPHG+++ +DP+   T +LL  L+FANG+++S D+ + V CET
Sbjct:   181 DFYQFIFDFLEGKPHGRVMSFDPTTRATRVLLKDLYFANGISMSPDQTHFVFCET 235

GO:0009058 "biosynthetic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0009821 "alkaloid biosynthetic process" evidence=ISS

GO:0016844 "strictosidine synthase activity" evidence=IEA;ISS;TAS

GO:0009902 "chloroplast relocation" evidence=RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0010155 "regulation of proton transport" evidence=RCA

GO:0030154 "cell differentiation" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

GO:0046777 "protein autophosphorylation" evidence=RCA

TAIR|locus:2081845 YLS2 "YELLOW-LEAF-SPECIFIC GENE 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 301 (111.0 bits), Expect = 9.4e-27, P = 9.4e-27
 Identities = 63/175 (36%), Positives = 99/175 (56%)

Query:    71 LGEGILNGPEDVCVDRNG-VLYTATRDGWIKRL--H---KNGTWENWKXXXXXXXXXXXX 124
             +G G+L+ PED+   ++  ++YT   DGW+KR+  H    +   E+W             
Sbjct:    62 IGVGLLDKPEDIAYHQDSNLIYTGCIDGWVKRVSVHDSANDSVVEDWVNTGGRPLGIAFG 121

Query:   125 XQENEILVCDADKGLLKVTEEG--VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKF 182
                 E++V DA KGLL ++ +G    +L     G +  L D +  A +G +YF+ AS K+
Sbjct:   122 VH-GEVIVADAYKGLLNISGDGKKTELLTDQAEGVKFKLTDVVAVADNGVLYFTDASYKY 180

Query:   183 GLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCET 237
              LH    D+LE KPHG+L+ +DP+   T +LL  L+FANGV++S D+ +L+ CET
Sbjct:   181 TLHQVKFDILEGKPHGRLMSFDPTTRVTRVLLKDLYFANGVSMSPDQTHLIFCET 235

GO:0009058 "biosynthetic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0009821 "alkaloid biosynthetic process" evidence=ISS

GO:0016844 "strictosidine synthase activity" evidence=IEA;ISS;TAS

GO:0005783 "endoplasmic reticulum" evidence=IDA

TAIR|locus:2081875 AT3G51450 [Arabidopsis thaliana (taxid:3702)]

 Score = 295 (108.9 bits), Expect = 4.0e-26, P = 4.0e-26
 Identities = 61/175 (34%), Positives = 97/175 (55%)

Query:    71 LGEGILNGPEDVCVDR-NGVLYTATRDGWIKRLH-----KNGTWENWKXXXXXXXXXXXX 124
             +G G+LN PED+   + + ++YT   DGW+KR+       +   E+W             
Sbjct:    62 IGVGLLNIPEDIAYHKESNLIYTGCVDGWVKRVKVADSVNDSVVEDWVNTGGRPLGIAFG 121

Query:   125 XQENEILVCDADKGLLKVTEEG--VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKF 182
                 E++V D  KGLL ++ +G    +L    +G +  L D +  A +G +YF+ AS K+
Sbjct:   122 IH-GEVIVADVHKGLLNISGDGKKTELLTDEADGVKFKLTDAVTVADNGVLYFTDASYKY 180

Query:   183 GLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCET 237
              L+   LD+LE KP G+LL +DP+   T +LL  L+FANG+ +S D+ +L+ CET
Sbjct:   181 TLNQLSLDMLEGKPFGRLLSFDPTTRVTKVLLKDLYFANGITISPDQTHLIFCET 235

GO:0009058 "biosynthetic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0009821 "alkaloid biosynthetic process" evidence=ISS

GO:0016844 "strictosidine synthase activity" evidence=IEA;ISS;TAS

GO:0009611 "response to wounding" evidence=RCA

GO:0009620 "response to fungus" evidence=RCA

GO:0009694 "jasmonic acid metabolic process" evidence=RCA

GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

ZFIN|ZDB-GENE-081022-75 zgc:194209 "zgc:194209" [Danio rerio (taxid:7955)]

 Score = 161 (61.7 bits), Expect = 8.1e-17, Sum P(2) = 8.1e-17
 Identities = 39/117 (33%), Positives = 68/117 (58%)

Query:   126 QENEILVCDADKGLLKVTEE-GV-TVLASHVNGSR---INLADDLIAATDGSIYFSVAST 180
             ++ +++V D+  GL KV    G  T+L S  +G+        + L  + +G+++F+ +S+
Sbjct:   175 RDGQLIVADSYYGLFKVDPSTGEKTLLHSSKDGADGIPFGFLNGLEISKNGTVFFTDSSS 234

Query:   181 KFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCET 237
             K+G  +   ++LE    G+LL +DP+      LLDSL+  NG A S DED+L++ ET
Sbjct:   235 KWGRRHVRYEVLETNRLGRLLTFDPTSGRVRTLLDSLYMPNGFAFSPDEDFLLLAET 291

GO:0016844 "strictosidine synthase activity" evidence=IEA

GO:0009058 "biosynthetic process" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

RGD|1308874 Apmap "adipocyte plasma membrane associated protein" [Rattus norvegicus (taxid:10116)]

 Score = 203 (76.5 bits), Expect = 6.8e-16, P = 6.8e-16
 Identities = 63/191 (32%), Positives = 95/191 (49%)

Query:    65 IQSVTRLGEGILNGPEDVCVDRNGVLYTATRDGWIKRLHKNGTWEN--------WKXXXX 116
             ++   RL E  LNGPE + V+   VL+T T DG + +L +NG  E          K    
Sbjct:    48 LRQAERLFENQLNGPESI-VNIGDVLFTGTADGRVVKL-ENGEIETIARFGSGPCKTRDD 105

Query:   117 XXX----XXXXXXQENEILVCDADKGLLKVTEE--GVTVLASH---VNGSRINLADDLIA 167
                              + V DA KGL +V  +   V +L S    + G +++  +DL  
Sbjct:   106 EPTCGRPLGIRVGPNGTLFVVDAYKGLFEVNPQKRSVKLLLSSETPIEGKKMSFVNDLTI 165

Query:   168 ATDG-SIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALS 226
               DG  IYF+ +S+K+   ++ L ++E    G+LL+YD    E  +LLD L F NGV LS
Sbjct:   166 TRDGRKIYFTDSSSKWQRRDYLLLVMEGTDDGRLLEYDTVTKEVKVLLDQLQFPNGVQLS 225

Query:   227 KDEDYLVVCET 237
              +ED+++V ET
Sbjct:   226 PEEDFVLVAET 236

GO:0004064 "arylesterase activity" evidence=ISO

GO:0009058 "biosynthetic process" evidence=IEA

GO:0009986 "cell surface" evidence=ISO

GO:0016020 "membrane" evidence=ISO

GO:0016021 "integral to membrane" evidence=IEA

GO:0016844 "strictosidine synthase activity" evidence=IEA

UNIPROTKB|F1LLW3 RGD1308874 "Protein RGD1308874" [Rattus norvegicus (taxid:10116)]

 Score = 203 (76.5 bits), Expect = 7.5e-16, P = 7.5e-16
 Identities = 63/191 (32%), Positives = 95/191 (49%)

Query:    65 IQSVTRLGEGILNGPEDVCVDRNGVLYTATRDGWIKRLHKNGTWEN--------WKXXXX 116
             ++   RL E  LNGPE + V+   VL+T T DG + +L +NG  E          K    
Sbjct:    58 LRQAERLFENQLNGPESI-VNIGDVLFTGTADGRVVKL-ENGEIETIARFGSGPCKTRDD 115

Query:   117 XXX----XXXXXXQENEILVCDADKGLLKVTEE--GVTVLASH---VNGSRINLADDLIA 167
                              + V DA KGL +V  +   V +L S    + G +++  +DL  
Sbjct:   116 EPTCGRPLGIRVGPNGTLFVVDAYKGLFEVNPQKRSVKLLLSSETPIEGKKMSFVNDLTI 175

Query:   168 ATDG-SIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALS 226
               DG  IYF+ +S+K+   ++ L ++E    G+LL+YD    E  +LLD L F NGV LS
Sbjct:   176 TRDGRKIYFTDSSSKWQRRDYLLLVMEGTDDGRLLEYDTVTKEVKVLLDQLQFPNGVQLS 235

Query:   227 KDEDYLVVCET 237
              +ED+++V ET
Sbjct:   236 PEEDFVLVAET 246

GO:0009058 "biosynthetic process" evidence=IEA

GO:0016844 "strictosidine synthase activity" evidence=IEA

TAIR|locus:2097488 LAP3 "LESS ADHERENT POLLEN 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 202 (76.2 bits), Expect = 1.1e-15, P = 1.1e-15
 Identities = 47/114 (41%), Positives = 66/114 (57%)

Query:   126 QENEILVCDADKGLLKVTEEG--VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFG 183
             +   + + DA  GLL V  EG   T LA+HV G  I  A+DL    +GSI+F+  S ++ 
Sbjct:   160 ETGNLYIADAYYGLLVVGPEGGIATPLATHVEGKPILFANDLDIHRNGSIFFTDTSKRYD 219

Query:   184 LHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCET 237
               N    LLE +  G+LL+YDP    T I+L+ L F NG+ LSKD+ +L+  ET
Sbjct:   220 RANHFFILLEGESTGRLLRYDPPTKTTHIVLEGLAFPNGIQLSKDQSFLLFTET 273

GO:0005739 "mitochondrion" evidence=ISM

GO:0009058 "biosynthetic process" evidence=IEA

GO:0009821 "alkaloid biosynthetic process" evidence=ISS

GO:0010584 "pollen exine formation" evidence=RCA;IMP

GO:0016844 "strictosidine synthase activity" evidence=IEA;ISS;TAS

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

UNIPROTKB|E2RPE9 APMAP "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 192 (72.6 bits), Expect = 1.5e-14, P = 1.5e-14
 Identities = 60/191 (31%), Positives = 92/191 (48%)

Query:    65 IQSVTRLGEGILNGPEDVCVDRNGVLYTATRDGWIKRLHKNGTWENWKXXXXX------- 117
             +Q   RL E  L GPE +  +   V++T T DG + +L +NG  E               
Sbjct:    87 LQQAERLFENQLIGPESIA-NIGDVMFTGTADGRLVKL-ENGEVETIARFGSGPCKTRDD 144

Query:   118 -----XXXXXXXXQENEILVCDADKGLLKVT--EEGVTVLASH---VNGSRINLADDLIA 167
                              + V DA KGL +V   +  V +L S    + G +++  +DL  
Sbjct:   145 EPACGRLLGIRAGPNGTLFVADAYKGLFEVNPWKREVKLLVSSEIPIEGRKMSFVNDLTI 204

Query:   168 ATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALS 226
               DG  IYF+ +S+K+   ++ L ++E    G+LL+YD    E  +LLD L F NGV LS
Sbjct:   205 TQDGKKIYFTDSSSKWQRRDYLLLVMEGTDDGRLLEYDMETKEVKVLLDQLRFPNGVQLS 264

Query:   227 KDEDYLVVCET 237
              +ED+++V ET
Sbjct:   265 PEEDFVLVAET 275

GO:0016020 "membrane" evidence=IEA

GO:0009986 "cell surface" evidence=IEA

GO:0004064 "arylesterase activity" evidence=IEA

GO:0016844 "strictosidine synthase activity" evidence=IEA

GO:0009058 "biosynthetic process" evidence=IEA

FB|FBgn0015737 Hmu "Hemomucin" [Drosophila melanogaster (taxid:7227)]

 Score = 157 (60.3 bits), Expect = 4.6e-14, Sum P(2) = 4.6e-14
 Identities = 41/121 (33%), Positives = 69/121 (57%)

Query:   126 QENEILVCDADKGLLKV---TEEGVTVL--ASHVNGSRIN----LADDLIAATDGSIYFS 176
             Q N +++ DA  GL +V   T +   ++  A  + G  IN    + + +  + +G +Y++
Sbjct:   127 QGNNLIIADAYYGLWQVDLGTNKKTLLVSPAQELAGKSINRPAKIFNGVTVSKEGDVYWT 186

Query:   177 VASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCE 236
              +S+ F + +       A P G+L KY+ S N + +LLD L FANG+ALS +ED++VV E
Sbjct:   187 DSSSDFTIEDLVFASF-ANPSGRLFKYNRSKNVSEVLLDELAFANGLALSPNEDFIVVAE 245

Query:   237 T 237
             T
Sbjct:   246 T 246

GO:0009986 "cell surface" evidence=IDA

GO:0003729 "mRNA binding" evidence=NAS

GO:0004872 "receptor activity" evidence=NAS

GO:0004252 "serine-type endopeptidase activity" evidence=NAS

GO:0016844 "strictosidine synthase activity" evidence=IEA

GO:0009058 "biosynthetic process" evidence=IEA

GO:0005811 "lipid particle" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	239
pfam03088	89	pfam03088, Str_synth, Strictosidine synthase	1e-21
COG3386	307	COG3386, COG3386, Gluconolactonase [Carbohydrate t	2e-16
pfam08450	245	pfam08450, SGL, SMP-30/Gluconolaconase/LRE-like re	4e-05

>gnl|CDD|111929 pfam03088, Str_synth, Strictosidine synthase

 Score = 85.1 bits (211), Expect = 1e-21
 Identities = 27/72 (37%), Positives = 43/72 (59%)

Query: 166 IAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVAL 225
           +    G +YF+ +S+++        +LE    G+L+KYDPS   T +LL  L+F NG+AL
Sbjct: 5   VDPETGVLYFTDSSSRYDRRQVIFAMLEGDKTGRLMKYDPSTKVTKVLLKDLYFPNGIAL 64

Query: 226 SKDEDYLVVCET 237
           S D  +++ CET
Sbjct: 65  SPDGSFVLFCET 76

Strictosidine synthase (E.C. 4.3.3.2) is a key enzyme in alkaloid biosynthesis. It catalyzes the condensation of tryptamine with secologanin to form strictosidine. Length = 89

>gnl|CDD|225921 COG3386, COG3386, Gluconolactonase [Carbohydrate transport and metabolism]

 Score = 76.3 bits (188), Expect = 2e-16
 Identities = 47/170 (27%), Positives = 71/170 (41%), Gaps = 14/170 (8%)

Query: 70  RLGEGILNGPEDVCVDRNGVLYTATRDGWIKRLH-KNGTWENWKLIGGDTLLGITTTQEN 128
            LGEG +  P     DR  +L+     G I RL  + G    +   GG +   +      
Sbjct: 25  TLGEGPVWDP-----DRGALLWVDILGGRIHRLDPETGKKRVFPSPGGFSSGALIDAGGR 79

Query: 129 EILVCDADKGLLKV-TEEGVTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNW 187
            ++ C+    LL   T   +T+LA   +G  +N  +D +   DG I+F        +  +
Sbjct: 80  -LIACEHGVRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGRIWFG------DMGYF 132

Query: 188 GLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCET 237
            L   E +P G L + DP      +L D L   NG+A S D   L V +T
Sbjct: 133 DLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLYVADT 182

Length = 307

>gnl|CDD|219847 pfam08450, SGL, SMP-30/Gluconolaconase/LRE-like region

 Score = 43.4 bits (103), Expect = 4e-05
 Identities = 37/172 (21%), Positives = 60/172 (34%), Gaps = 25/172 (14%)

Query: 71  LGEGILNGPEDVCVDRNGVLYTATRDGWIKRLH----KNGTWENWKLIGGDTLLGITTTQ 126
           LGEG +        +   + +     G I RL     K   W+    +G      I    
Sbjct: 1   LGEGPV-----WDEEEGALYWVDILGGRIHRLDPATGKETVWDLPGPVGA-----IALRD 50

Query: 127 ENEILVCDAD-KGLLKVTEEGVTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLH 185
           +  ++V       LL +    +T LA       +N  +D     DG  +F          
Sbjct: 51  DGRLIVALKRGLALLDLDTGELTTLADLEPDEPLNRFNDGKVDPDGRFWFGTM------- 103

Query: 186 NWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCET 237
             G D+      G L + DP   +   +LD +  +NG+A S D   L   ++
Sbjct: 104 --GFDIAPGGEPGALYRLDPDG-KVERVLDGITISNGLAWSPDGKTLYFADS 152

This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30), gluconolactonase and luciferin-regenerating enzyme (LRE). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 and LRE. Length = 245

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	239
KOG1520	376	consensus Predicted alkaloid synthase/Surface muci	100.0
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	99.89
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	99.88
PF03088	89	Str_synth: Strictosidine synthase; InterPro: IPR01	99.87
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	99.73
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	99.72
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.59
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.53
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	99.49
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	99.48
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	99.18
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	99.17
PRK11028	330	6-phosphogluconolactonase; Provisional	99.13
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	99.08
COG3391	381	Uncharacterized conserved protein [Function unknow	99.05
PRK11028	330	6-phosphogluconolactonase; Provisional	99.03
COG3391	381	Uncharacterized conserved protein [Function unknow	98.99
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	98.99
KOG4659	1899	consensus Uncharacterized conserved protein (Rhs f	98.97
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	98.92
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	98.82
COG2133	399	Glucose/sorbosone dehydrogenases [Carbohydrate tra	98.8
KOG4659	1899	consensus Uncharacterized conserved protein (Rhs f	98.79
KOG1214	1289	consensus Nidogen and related basement membrane pr	98.77
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	98.72
KOG1520	376	consensus Predicted alkaloid synthase/Surface muci	98.7
PF01731	86	Arylesterase: Arylesterase; InterPro: IPR002640 Th	98.67
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	98.67
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	98.64
KOG1214	1289	consensus Nidogen and related basement membrane pr	98.59
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	98.58
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	98.53
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	98.44
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	98.4
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	98.4
KOG0266	456	consensus WD40 repeat-containing protein [General	98.39
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	98.36
PF05787	524	DUF839: Bacterial protein of unknown function (DUF	98.29
COG3211	616	PhoX Predicted phosphatase [General function predi	98.25
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	98.23
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	98.2
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	98.2
PRK04792	448	tolB translocation protein TolB; Provisional	98.16
PRK05137	435	tolB translocation protein TolB; Provisional	98.1
PRK04922	433	tolB translocation protein TolB; Provisional	98.1
PF03022	287	MRJP: Major royal jelly protein; InterPro: IPR0035	98.09
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	98.05
PRK03629	429	tolB translocation protein TolB; Provisional	98.0
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	98.0
PF03022	287	MRJP: Major royal jelly protein; InterPro: IPR0035	97.97
PRK00178	430	tolB translocation protein TolB; Provisional	97.94
PF03088	89	Str_synth: Strictosidine synthase; InterPro: IPR01	97.94
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	97.92
PRK02889	427	tolB translocation protein TolB; Provisional	97.88
PRK05137	435	tolB translocation protein TolB; Provisional	97.88
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	97.88
COG4946	668	Uncharacterized protein related to the periplasmic	97.83
PRK04922	433	tolB translocation protein TolB; Provisional	97.82
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	97.8
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	97.79
PF01436	28	NHL: NHL repeat; InterPro: IPR001258 The NHL repea	97.78
PRK04792	448	tolB translocation protein TolB; Provisional	97.78
KOG0318	603	consensus WD40 repeat stress protein/actin interac	97.78
PF05787	524	DUF839: Bacterial protein of unknown function (DUF	97.74
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	97.74
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	97.71
PRK01742	429	tolB translocation protein TolB; Provisional	97.7
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	97.69
KOG0286	343	consensus G-protein beta subunit [General function	97.65
PRK04043	419	tolB translocation protein TolB; Provisional	97.64
PRK03629	429	tolB translocation protein TolB; Provisional	97.55
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	97.54
PRK01742	429	tolB translocation protein TolB; Provisional	97.52
TIGR03032	335	conserved hypothetical protein TIGR03032. This pro	97.52
PRK02889	427	tolB translocation protein TolB; Provisional	97.51
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	97.5
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	97.49
COG2133	399	Glucose/sorbosone dehydrogenases [Carbohydrate tra	97.49
KOG0315	311	consensus G-protein beta subunit-like protein (con	97.45
PRK02888	635	nitrous-oxide reductase; Validated	97.42
PTZ00421	493	coronin; Provisional	97.42
PRK00178	430	tolB translocation protein TolB; Provisional	97.38
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	97.36
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	97.35
KOG0266	456	consensus WD40 repeat-containing protein [General	97.33
PRK01029	428	tolB translocation protein TolB; Provisional	97.32
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	97.3
PRK04043	419	tolB translocation protein TolB; Provisional	97.3
KOG0315	311	consensus G-protein beta subunit-like protein (con	97.3
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	97.29
PF01436	28	NHL: NHL repeat; InterPro: IPR001258 The NHL repea	97.25
KOG0318	603	consensus WD40 repeat stress protein/actin interac	97.19
KOG2106	626	consensus Uncharacterized conserved protein, conta	97.18
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	97.12
PF00058	42	Ldl_recept_b: Low-density lipoprotein receptor rep	97.11
PF13449	326	Phytase-like: Esterase-like activity of phytase	97.11
PRK02888	635	nitrous-oxide reductase; Validated	97.1
KOG0278	334	consensus Serine/threonine kinase receptor-associa	97.09
KOG1273	405	consensus WD40 repeat protein [General function pr	97.08
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	97.08
PRK01029	428	tolB translocation protein TolB; Provisional	97.07
KOG0279	315	consensus G protein beta subunit-like protein [Sig	97.07
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	97.0
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	96.99
PF02333	381	Phytase: Phytase; InterPro: IPR003431 Phytase (3.1	96.85
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	96.85
KOG1539	910	consensus WD repeat protein [General function pred	96.85
KOG0289	506	consensus mRNA splicing factor [General function p	96.83
KOG0282	503	consensus mRNA splicing factor [Function unknown]	96.83
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	96.82
PF14517	229	Tachylectin: Tachylectin; PDB: 1TL2_A.	96.79
KOG0286	343	consensus G-protein beta subunit [General function	96.76
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	96.75
PTZ00420	568	coronin; Provisional	96.75
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	96.72
PF13449	326	Phytase-like: Esterase-like activity of phytase	96.69
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	96.65
KOG0973	942	consensus Histone transcription regulator HIRA, WD	96.6
KOG2048	691	consensus WD40 repeat protein [General function pr	96.6
KOG0288	459	consensus WD40 repeat protein TipD [General functi	96.53
PTZ00421	493	coronin; Provisional	96.51
PRK13684	334	Ycf48-like protein; Provisional	96.49
smart00135	43	LY Low-density lipoprotein-receptor YWTD domain. T	96.47
KOG0283	712	consensus WD40 repeat-containing protein [Function	96.47
COG3211	616	PhoX Predicted phosphatase [General function predi	96.47
KOG1274	933	consensus WD40 repeat protein [General function pr	96.46
PLN00181	793	protein SPA1-RELATED; Provisional	96.45
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	96.43
KOG0279	315	consensus G protein beta subunit-like protein [Sig	96.42
KOG0293	519	consensus WD40 repeat-containing protein [Function	96.39
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	96.36
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	96.36
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	96.31
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	96.29
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	96.2
TIGR03032	335	conserved hypothetical protein TIGR03032. This pro	96.18
KOG0973	942	consensus Histone transcription regulator HIRA, WD	96.18
COG1520	370	FOG: WD40-like repeat [Function unknown]	96.18
KOG0293	519	consensus WD40 repeat-containing protein [Function	96.15
PLN00033	398	photosystem II stability/assembly factor; Provisio	96.11
KOG0772	641	consensus Uncharacterized conserved protein, conta	96.1
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	95.96
PF14517	229	Tachylectin: Tachylectin; PDB: 1TL2_A.	95.91
KOG0772	641	consensus Uncharacterized conserved protein, conta	95.9
PTZ00420	568	coronin; Provisional	95.89
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	95.88
KOG0263	707	consensus Transcription initiation factor TFIID, s	95.88
KOG0263	707	consensus Transcription initiation factor TFIID, s	95.87
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	95.86
smart00135	43	LY Low-density lipoprotein-receptor YWTD domain. T	95.83
KOG0296	399	consensus Angio-associated migratory cell protein	95.71
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	95.71
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	95.68
KOG2096	420	consensus WD40 repeat protein [General function pr	95.66
KOG0294	362	consensus WD40 repeat-containing protein [Function	95.61
COG1520	370	FOG: WD40-like repeat [Function unknown]	95.57
COG3292	671	Predicted periplasmic ligand-binding sensor domain	95.52
PF05935	477	Arylsulfotrans: Arylsulfotransferase (ASST); Inter	95.45
KOG0301	745	consensus Phospholipase A2-activating protein (con	95.4
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	95.38
PRK13684	334	Ycf48-like protein; Provisional	95.38
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	95.32
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	95.29
KOG2048	691	consensus WD40 repeat protein [General function pr	95.26
KOG2055	514	consensus WD40 repeat protein [General function pr	95.18
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	95.13
PLN00181	793	protein SPA1-RELATED; Provisional	95.11
KOG0289	506	consensus mRNA splicing factor [General function p	95.05
KOG1407	313	consensus WD40 repeat protein [Function unknown]	94.99
COG4946	668	Uncharacterized protein related to the periplasmic	94.9
KOG0296	399	consensus Angio-associated migratory cell protein	94.82
KOG1274	933	consensus WD40 repeat protein [General function pr	94.8
PF00058	42	Ldl_recept_b: Low-density lipoprotein receptor rep	94.68
KOG1215	877	consensus Low-density lipoprotein receptors contai	94.67
KOG0303	472	consensus Actin-binding protein Coronin, contains	94.65
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	94.61
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	94.6
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	94.56
PRK13616	591	lipoprotein LpqB; Provisional	94.55
KOG0643	327	consensus Translation initiation factor 3, subunit	94.52
KOG1407	313	consensus WD40 repeat protein [Function unknown]	94.47
PLN00033	398	photosystem II stability/assembly factor; Provisio	94.34
KOG2106	626	consensus Uncharacterized conserved protein, conta	94.31
KOG0640	430	consensus mRNA cleavage stimulating factor complex	94.24
KOG0282	503	consensus mRNA splicing factor [Function unknown]	94.19
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	94.17
KOG2055	514	consensus WD40 repeat protein [General function pr	94.04
KOG0316	307	consensus Conserved WD40 repeat-containing protein	94.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	93.98
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	93.98
PF01731	86	Arylesterase: Arylesterase; InterPro: IPR002640 Th	93.94
KOG0646	476	consensus WD40 repeat protein [General function pr	93.79
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	93.73
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	93.67
KOG1215	877	consensus Low-density lipoprotein receptors contai	93.67
KOG2139	445	consensus WD40 repeat protein [General function pr	93.6
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	93.56
KOG0310	487	consensus Conserved WD40 repeat-containing protein	93.22
KOG0645	312	consensus WD40 repeat protein [General function pr	93.21
COG3292	671	Predicted periplasmic ligand-binding sensor domain	93.1
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	93.1
KOG0316	307	consensus Conserved WD40 repeat-containing protein	92.48
KOG2139	445	consensus WD40 repeat protein [General function pr	92.38
KOG0771	398	consensus Prolactin regulatory element-binding pro	92.26
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	92.25
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	92.21
KOG0275	508	consensus Conserved WD40 repeat-containing protein	92.05
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	91.91
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	91.86
PF06739	38	SBBP: Beta-propeller repeat; InterPro: IPR010620 T	91.68
KOG0771	398	consensus Prolactin regulatory element-binding pro	91.26
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	91.17
KOG0646	476	consensus WD40 repeat protein [General function pr	90.97
PRK13616	591	lipoprotein LpqB; Provisional	90.9
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	90.72
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	90.68
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	90.65
KOG1963	792	consensus WD40 repeat protein [General function pr	90.36
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	90.03
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	89.26
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	89.25
KOG2110	391	consensus Uncharacterized conserved protein, conta	89.23
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	89.22
PF05935	477	Arylsulfotrans: Arylsulfotransferase (ASST); Inter	89.16
PF14269	299	Arylsulfotran_2: Arylsulfotransferase (ASST)	89.05
KOG0284	464	consensus Polyadenylation factor I complex, subuni	89.02
PF02333	381	Phytase: Phytase; InterPro: IPR003431 Phytase (3.1	88.95
KOG0639	705	consensus Transducin-like enhancer of split protei	88.93
PF06739	38	SBBP: Beta-propeller repeat; InterPro: IPR010620 T	88.83
PF14339	236	DUF4394: Domain of unknown function (DUF4394)	88.82
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	88.69
KOG0278	334	consensus Serine/threonine kinase receptor-associa	88.65
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	88.62
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	88.53
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	88.51
PRK13614	573	lipoprotein LpqB; Provisional	88.49
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	88.38
KOG0310	487	consensus Conserved WD40 repeat-containing protein	88.14
KOG1273	405	consensus WD40 repeat protein [General function pr	88.13
KOG3881	412	consensus Uncharacterized conserved protein [Funct	88.11
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	87.87
KOG0640	430	consensus mRNA cleavage stimulating factor complex	87.8
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	87.77
KOG0275	508	consensus Conserved WD40 repeat-containing protein	87.65
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	87.5
PF11725	1774	AvrE: Pathogenicity factor; InterPro: IPR021085 Th	87.42
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	87.35
smart00564	33	PQQ beta-propeller repeat. Beta-propeller repeat o	86.93
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	86.81
KOG0645	312	consensus WD40 repeat protein [General function pr	86.81
KOG2110	391	consensus Uncharacterized conserved protein, conta	86.74
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	86.49
KOG2321	703	consensus WD40 repeat protein [General function pr	86.19
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	85.6
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	85.35
KOG4547	541	consensus WD40 repeat-containing protein [General	85.06
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	85.02
COG4447	339	Uncharacterized protein related to plant photosyst	84.47
KOG1063	764	consensus RNA polymerase II elongator complex, sub	84.43
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	84.2
COG4247	364	Phy 3-phytase (myo-inositol-hexaphosphate 3-phosph	84.1
KOG0301	745	consensus Phospholipase A2-activating protein (con	83.88
KOG0288	459	consensus WD40 repeat protein TipD [General functi	83.49
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	83.44
KOG1963	792	consensus WD40 repeat protein [General function pr	82.93
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	82.42
KOG0283	712	consensus WD40 repeat-containing protein [Function	82.26
COG4222	391	Uncharacterized protein conserved in bacteria [Fun	82.26
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	81.94
KOG0641	350	consensus WD40 repeat protein [General function pr	81.72
KOG4328	498	consensus WD40 protein [Function unknown]	81.44
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	81.28
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	81.24
PF07494	24	Reg_prop: Two component regulator propeller; Inter	81.2
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	80.61

>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]

Probab=100.00  E-value=8.4e-33  Score=239.01  Aligned_cols=187  Identities=31%  Similarity=0.500  Sum_probs=157.5

Q ss_pred             CCCCCCCCCCCCcccccceEeccCCcCCcceEEEcCCCC--EEEEeCCCeEEEEecC---------C-cEEEeeeccCcC
Q 026389           51 PPASSASLIPTTSDIQSVTRLGEGILNGPEDVCVDRNGV--LYTATRDGWIKRLHKN---------G-TWENWKLIGGDT  118 (239)
Q Consensus        51 p~~~~~g~~~~n~~l~~~~~l~~g~~~gPe~ia~d~~G~--ly~~~~~g~I~~~~~~---------G-~~~~~~~~~~~p  118 (239)
                      ++.|..+.+.+++.+...|.+..+....|+.+.+. +|+  +|++..+|+|.+.+..         + ........||||
T Consensus        39 ~~~~~~~~l~~~~~~~g~E~~~fd~~~~gp~~~v~-dg~il~~~g~~~Gwv~~~~~~~s~~~~~~~~~~~~~~e~~CGRP  117 (376)
T KOG1520|consen   39 SKLPLLGKLIPNNHLTGPESLLFDPQGGGPYTGVV-DGRILKYTGNDDGWVKFADTKDSTNRSQCCDPGSFETEPLCGRP  117 (376)
T ss_pred             CCCCcccccccccccCChhhheecccCCCceEEEE-CCceEEEeccCceEEEEEeccccccccccCCCcceecccccCCc
Confidence            44444477788887777777777665555555555 344  6788889998887641         1 122335678999


Q ss_pred             ccCeEEcCCC-CEEEEeCCCCeEEEccCC--ceEEecccCCccccccccEEEcCCCCEEEEeCCCCcCcccccccceeec
Q 026389          119 LLGITTTQEN-EILVCDADKGLLKVTEEG--VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAK  195 (239)
Q Consensus       119 ~~Gl~~d~~G-~L~v~d~~~g~~~v~~~g--~~~l~~~~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~  195 (239)
                      + ||+++..| +|||||++.|++.+++.|  .+.+.+..+|.++.+.|+++|+++|.+||||++++|+.++++.+++|+.
T Consensus       118 L-Gl~f~~~ggdL~VaDAYlGL~~V~p~g~~a~~l~~~~~G~~~kf~N~ldI~~~g~vyFTDSSsk~~~rd~~~a~l~g~  196 (376)
T KOG1520|consen  118 L-GIRFDKKGGDLYVADAYLGLLKVGPEGGLAELLADEAEGKPFKFLNDLDIDPEGVVYFTDSSSKYDRRDFVFAALEGD  196 (376)
T ss_pred             c-eEEeccCCCeEEEEecceeeEEECCCCCcceeccccccCeeeeecCceeEcCCCeEEEeccccccchhheEEeeecCC
Confidence            9 99999887 999999999999999654  7888889999999999999999999999999999999999999999999


Q ss_pred             CCceEEEEeCCCCeEEEecCCCCCcceEEEcCCCCEEEEEeCCC
Q 026389          196 PHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCETFK  239 (239)
Q Consensus       196 ~~g~v~~~d~~~~~~~~~~~~l~~pnGia~s~dg~~lyvadt~~  239 (239)
                      ++||+++||+.+++++++++++.+|||+++|+|++++.++||.+
T Consensus       197 ~~GRl~~YD~~tK~~~VLld~L~F~NGlaLS~d~sfvl~~Et~~  240 (376)
T KOG1520|consen  197 PTGRLFRYDPSTKVTKVLLDGLYFPNGLALSPDGSFVLVAETTT  240 (376)
T ss_pred             CccceEEecCcccchhhhhhcccccccccCCCCCCEEEEEeecc
Confidence            99999999999999999999999999999999999999999864

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=99.89  E-value=4.8e-22  Score=167.51  Aligned_cols=148  Identities=27%  Similarity=0.419  Sum_probs=117.9

Q ss_pred             cceEEEcC-CCCEEEEe-CCCeEEEEecCCcEEEeeeccCcCccCeEEc-CCCCEEEEeCCCCeEEEc-cCC-ceEEecc
Q 026389           79 PEDVCVDR-NGVLYTAT-RDGWIKRLHKNGTWENWKLIGGDTLLGITTT-QENEILVCDADKGLLKVT-EEG-VTVLASH  153 (239)
Q Consensus        79 Pe~ia~d~-~G~ly~~~-~~g~I~~~~~~G~~~~~~~~~~~p~~Gl~~d-~~G~L~v~d~~~g~~~v~-~~g-~~~l~~~  153 (239)
                      |||++||+ +|.||+++ .+++|+++++++.......... |. |++++ ++|+||||+. .++..++ .+| .+.+...
T Consensus         2 ~Egp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~~~~-~~-G~~~~~~~g~l~v~~~-~~~~~~d~~~g~~~~~~~~   78 (246)
T PF08450_consen    2 GEGPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVIDLPG-PN-GMAFDRPDGRLYVADS-GGIAVVDPDTGKVTVLADL   78 (246)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEESSS-EE-EEEEECTTSEEEEEET-TCEEEEETTTTEEEEEEEE
T ss_pred             CcceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEEecCC-Cc-eEEEEccCCEEEEEEc-CceEEEecCCCcEEEEeec
Confidence            78999997 89999887 7899999998776544333333 99 99999 8899999997 4556668 567 7777766


Q ss_pred             cCCc-cccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecCCCCCcceEEEcCCCCEE
Q 026389          154 VNGS-RINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYL  232 (239)
Q Consensus       154 ~~g~-~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~~l~~pnGia~s~dg~~l  232 (239)
                      ..+. ++..|||+++|++|++|||++......         ....|+||+++++ ++++.+.+++..||||+|++||++|
T Consensus        79 ~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~---------~~~~g~v~~~~~~-~~~~~~~~~~~~pNGi~~s~dg~~l  148 (246)
T PF08450_consen   79 PDGGVPFNRPNDVAVDPDGNLYVTDSGGGGAS---------GIDPGSVYRIDPD-GKVTVVADGLGFPNGIAFSPDGKTL  148 (246)
T ss_dssp             ETTCSCTEEEEEEEE-TTS-EEEEEECCBCTT---------CGGSEEEEEEETT-SEEEEEEEEESSEEEEEEETTSSEE
T ss_pred             cCCCcccCCCceEEEcCCCCEEEEecCCCccc---------cccccceEEECCC-CeEEEEecCcccccceEECCcchhe
Confidence            5454 889999999999999999998732110         0112899999998 8899999999999999999999999


Q ss_pred             EEEeCCC
Q 026389          233 VVCETFK  239 (239)
Q Consensus       233 yvadt~~  239 (239)
                      ||+||.+
T Consensus       149 yv~ds~~  155 (246)
T PF08450_consen  149 YVADSFN  155 (246)
T ss_dssp             EEEETTT
T ss_pred             eeccccc
Confidence            9999863

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=99.88  E-value=2e-21  Score=168.34  Aligned_cols=154  Identities=29%  Similarity=0.395  Sum_probs=122.2

Q ss_pred             CcceEEEcCCC-CEE-EEeCCCeEEEEec-CCcEEEeeeccCcCccCeEEcCCCCEEEEeCCCCeEEEccCCc-eEEecc
Q 026389           78 GPEDVCVDRNG-VLY-TATRDGWIKRLHK-NGTWENWKLIGGDTLLGITTTQENEILVCDADKGLLKVTEEGV-TVLASH  153 (239)
Q Consensus        78 gPe~ia~d~~G-~ly-~~~~~g~I~~~~~-~G~~~~~~~~~~~p~~Gl~~d~~G~L~v~d~~~g~~~v~~~g~-~~l~~~  153 (239)
                      -.||..|++++ .|| +....++|+++++ +|+.+.|......+. ++.++.+|+|++|+.+..++.++..+. +.+...
T Consensus        26 ~gEgP~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~~~~p~~~~~-~~~~d~~g~Lv~~~~g~~~~~~~~~~~~t~~~~~  104 (307)
T COG3386          26 LGEGPVWDPDRGALLWVDILGGRIHRLDPETGKKRVFPSPGGFSS-GALIDAGGRLIACEHGVRLLDPDTGGKITLLAEP  104 (307)
T ss_pred             cccCccCcCCCCEEEEEeCCCCeEEEecCCcCceEEEECCCCccc-ceeecCCCeEEEEccccEEEeccCCceeEEeccc
Confidence            34444777754 466 5559999999998 488888988888899 999999999999987655555533444 788888


Q ss_pred             cCCccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecCCCCCcceEEEcCCCCEEE
Q 026389          154 VNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLV  233 (239)
Q Consensus       154 ~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~~l~~pnGia~s~dg~~ly  233 (239)
                      .++.+.+++||+.++++|++||+++.+ +.     ...-+.++.|+|||+||.++.++.+.+.+..||||||||||++||
T Consensus       105 ~~~~~~~r~ND~~v~pdG~~wfgt~~~-~~-----~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~tly  178 (307)
T COG3386         105 EDGLPLNRPNDGVVDPDGRIWFGDMGY-FD-----LGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLY  178 (307)
T ss_pred             cCCCCcCCCCceeEcCCCCEEEeCCCc-cc-----cCccccCCcceEEEEcCCCCEEEeecCcEEecCceEECCCCCEEE
Confidence            888899999999999999999999983 11     233345677899999997555555555599999999999999999


Q ss_pred             EEeCC
Q 026389          234 VCETF  238 (239)
Q Consensus       234 vadt~  238 (239)
                      ++||.
T Consensus       179 ~aDT~  183 (307)
T COG3386         179 VADTP  183 (307)
T ss_pred             EEeCC
Confidence            99995

>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4

Probab=99.87  E-value=8.5e-23  Score=144.73  Aligned_cols=77  Identities=49%  Similarity=0.934  Sum_probs=64.3

Q ss_pred             ccEEEcCC-CCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecCCCCCcceEEEcCCCCEEEEEeCCC
Q 026389          163 DDLIAATD-GSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCETFK  239 (239)
Q Consensus       163 n~l~vd~d-G~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~~l~~pnGia~s~dg~~lyvadt~~  239 (239)
                      ||++|+++ |.|||||++++|..+++..+++|++++|||++|||.++++++++++|.+||||++++|+++|+|+||++
T Consensus         1 ndldv~~~~g~vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp~t~~~~vl~~~L~fpNGVals~d~~~vlv~Et~~   78 (89)
T PF03088_consen    1 NDLDVDQDTGTVYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDPSTKETTVLLDGLYFPNGVALSPDESFVLVAETGR   78 (89)
T ss_dssp             -EEEE-TTT--EEEEES-SS--TTGHHHHHHHT---EEEEEEETTTTEEEEEEEEESSEEEEEE-TTSSEEEEEEGGG
T ss_pred             CceeEecCCCEEEEEeCccccCccceeeeeecCCCCcCEEEEECCCCeEEEehhCCCccCeEEEcCCCCEEEEEeccC
Confidence            79999999 999999999999999999999999999999999999999999999999999999999999999999974

3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=99.73  E-value=3.3e-16  Score=139.69  Aligned_cols=166  Identities=22%  Similarity=0.314  Sum_probs=121.3

Q ss_pred             ceEeccC-CcCCcceEEEcCCCCEEEEeC------------CC-eEEEEec---CCc---EEEeeeccCcCccCeEEcCC
Q 026389           68 VTRLGEG-ILNGPEDVCVDRNGVLYTATR------------DG-WIKRLHK---NGT---WENWKLIGGDTLLGITTTQE  127 (239)
Q Consensus        68 ~~~l~~g-~~~gPe~ia~d~~G~ly~~~~------------~g-~I~~~~~---~G~---~~~~~~~~~~p~~Gl~~d~~  127 (239)
                      ++.++.+ .+..|.+|++|++|+||++..            .+ +|++++.   ||+   ++.+.+....|+ ||++.++
T Consensus         4 ~~l~A~~p~~~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~-Gi~~~~~   82 (367)
T TIGR02604         4 VTLFAAEPLLRNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVT-GLAVAVG   82 (367)
T ss_pred             EEEEECCCccCCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCcc-ceeEecC
Confidence            4455543 588999999999999999852            23 8999874   454   467777788999 9999988


Q ss_pred             CCEEEEeCCCCeEEE-cc--C----C-ceEEecccCCc---cccccccEEEcCCCCEEEEeCCCCcC--cccccccceee
Q 026389          128 NEILVCDADKGLLKV-TE--E----G-VTVLASHVNGS---RINLADDLIAATDGSIYFSVASTKFG--LHNWGLDLLEA  194 (239)
Q Consensus       128 G~L~v~d~~~g~~~v-~~--~----g-~~~l~~~~~g~---~~~~pn~l~vd~dG~iy~td~~~~~~--~~~~~~~~~e~  194 (239)
                      | |||++.. .++++ +.  +    + .+++.+.+...   ....++++++++||+|||++.+....  ......+..+.
T Consensus        83 G-lyV~~~~-~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~  160 (367)
T TIGR02604        83 G-VYVATPP-DILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQ  160 (367)
T ss_pred             C-EEEeCCC-eEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCccc
Confidence            8 9999754 57666 32  2    2 34565554332   35679999999999999998852111  00000011123


Q ss_pred             cCCceEEEEeCCCCeEEEecCCCCCcceEEEcCCCCEEEEEeC
Q 026389          195 KPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCET  237 (239)
Q Consensus       195 ~~~g~v~~~d~~~~~~~~~~~~l~~pnGia~s~dg~~lyvadt  237 (239)
                      ...|+++||+|++++.+++..++.+|+|++|+++|+ +|++|.
T Consensus       161 ~~~g~i~r~~pdg~~~e~~a~G~rnp~Gl~~d~~G~-l~~tdn  202 (367)
T TIGR02604       161 GLGGGLFRYNPDGGKLRVVAHGFQNPYGHSVDSWGD-VFFCDN  202 (367)
T ss_pred             ccCceEEEEecCCCeEEEEecCcCCCccceECCCCC-EEEEcc
Confidence            345899999999999999999999999999999998 578775

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=99.72  E-value=4.3e-16  Score=131.20  Aligned_cols=143  Identities=22%  Similarity=0.318  Sum_probs=108.0

Q ss_pred             CcCCcceEEEcCCCCEEEEeC-C--------CeEEEEecCCcEEEeeeccCcCccCeEEcCCCC-EEEEeCCCCeE-EEc
Q 026389           75 ILNGPEDVCVDRNGVLYTATR-D--------GWIKRLHKNGTWENWKLIGGDTLLGITTTQENE-ILVCDADKGLL-KVT  143 (239)
Q Consensus        75 ~~~gPe~ia~d~~G~ly~~~~-~--------g~I~~~~~~G~~~~~~~~~~~p~~Gl~~d~~G~-L~v~d~~~g~~-~v~  143 (239)
                      ....|.++++|++|+||+++. .        |+|++++++++.+........|+ ||+++++|+ |||+|+..+.+ +++
T Consensus        84 ~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~pN-Gi~~s~dg~~lyv~ds~~~~i~~~~  162 (246)
T PF08450_consen   84 PFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPDGKVTVVADGLGFPN-GIAFSPDGKTLYVADSFNGRIWRFD  162 (246)
T ss_dssp             CTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETTSEEEEEEEEESSEE-EEEEETTSSEEEEEETTTTEEEEEE
T ss_pred             ccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCCCeEEEEecCccccc-ceEECCcchheeecccccceeEEEe
Confidence            467899999999999998862 1        67999999988877777788999 999999995 89999886654 455


Q ss_pred             c--CCc-----eEEecccCCccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecCC
Q 026389          144 E--EGV-----TVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDS  216 (239)
Q Consensus       144 ~--~g~-----~~l~~~~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~~  216 (239)
                      .  ++.     +++.+...+  ..+|+|+++|++|+||+++..                 .++|++||+++..+..+.-.
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~--~g~pDG~~vD~~G~l~va~~~-----------------~~~I~~~~p~G~~~~~i~~p  223 (246)
T PF08450_consen  163 LDADGGELSNRRVFIDFPGG--PGYPDGLAVDSDGNLWVADWG-----------------GGRIVVFDPDGKLLREIELP  223 (246)
T ss_dssp             EETTTCCEEEEEEEEE-SSS--SCEEEEEEEBTTS-EEEEEET-----------------TTEEEEEETTSCEEEEEE-S
T ss_pred             ccccccceeeeeeEEEcCCC--CcCCCcceEcCCCCEEEEEcC-----------------CCEEEEECCCccEEEEEcCC
Confidence            2  232     233222221  146999999999999999865                 58999999995555555555


Q ss_pred             CCCcceEEE-cCCCCEEEEEeC
Q 026389          217 LFFANGVAL-SKDEDYLVVCET  237 (239)
Q Consensus       217 l~~pnGia~-s~dg~~lyvadt  237 (239)
                      ...|..++| .+|.+.|||+..
T Consensus       224 ~~~~t~~~fgg~~~~~L~vTta  245 (246)
T PF08450_consen  224 VPRPTNCAFGGPDGKTLYVTTA  245 (246)
T ss_dssp             SSSEEEEEEESTTSSEEEEEEB
T ss_pred             CCCEEEEEEECCCCCEEEEEeC
Confidence            679999999 588899999864

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.59  E-value=6.5e-14  Score=139.23  Aligned_cols=146  Identities=19%  Similarity=0.271  Sum_probs=111.1

Q ss_pred             CcCCcceEEEcC-CCCEEEEe-CCCeEEEEecCCcEEEeeec---------------cCcCccCeEEcCCCC-EEEEeCC
Q 026389           75 ILNGPEDVCVDR-NGVLYTAT-RDGWIKRLHKNGTWENWKLI---------------GGDTLLGITTTQENE-ILVCDAD  136 (239)
Q Consensus        75 ~~~gPe~ia~d~-~G~ly~~~-~~g~I~~~~~~G~~~~~~~~---------------~~~p~~Gl~~d~~G~-L~v~d~~  136 (239)
                      .+..|.++++|+ +|+||+++ .+++|.+++.+|+.......               ..+|. |+++|++|+ |||+|..
T Consensus       566 ~l~~P~gvavd~~~g~lyVaDs~n~rI~v~d~~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~-GIavd~~gn~LYVaDt~  644 (1057)
T PLN02919        566 PLKFPGKLAIDLLNNRLFISDSNHNRIVVTDLDGNFIVQIGSTGEEGLRDGSFEDATFNRPQ-GLAYNAKKNLLYVADTE  644 (1057)
T ss_pred             cCCCCceEEEECCCCeEEEEECCCCeEEEEeCCCCEEEEEccCCCcCCCCCchhccccCCCc-EEEEeCCCCEEEEEeCC
Confidence            478999999997 68899888 78899999998876433221               23699 999998774 9999988


Q ss_pred             CCeEE-Ec-cCC-ceEEecc------cCC------ccccccccEEEcC-CCCEEEEeCCCCcCcccccccceeecCCceE
Q 026389          137 KGLLK-VT-EEG-VTVLASH------VNG------SRINLADDLIAAT-DGSIYFSVASTKFGLHNWGLDLLEAKPHGKL  200 (239)
Q Consensus       137 ~g~~~-v~-~~g-~~~l~~~------~~g------~~~~~pn~l~vd~-dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v  200 (239)
                      ++.++ ++ .++ ++.+...      ..|      ..++.|.++++++ +|++|++|..                 +++|
T Consensus       645 n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~-----------------~~~I  707 (1057)
T PLN02919        645 NHALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAG-----------------QHQI  707 (1057)
T ss_pred             CceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECC-----------------CCeE
Confidence            76665 56 456 6666431      111      2378899999999 6799999976                 4688


Q ss_pred             EEEeCCCCeEEEec---------------CCCCCcceEEEcCCCCEEEEEeCC
Q 026389          201 LKYDPSLNETSILL---------------DSLFFANGVALSKDEDYLVVCETF  238 (239)
Q Consensus       201 ~~~d~~~~~~~~~~---------------~~l~~pnGia~s~dg~~lyvadt~  238 (239)
                      ++||+.++.+..+.               ..+..|+||++++||++|||+|+.
T Consensus       708 ~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~  760 (1057)
T PLN02919        708 WEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSE  760 (1057)
T ss_pred             EEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECC
Confidence            88888776665432               125689999999999999999975

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.53  E-value=6.1e-13  Score=132.37  Aligned_cols=144  Identities=24%  Similarity=0.371  Sum_probs=108.2

Q ss_pred             cCCcceEEEcC-CCCEEEEe-CCCeEEEEecC-CcEEEeee---------------ccCcCccCeEEcCCCC-EEEEeCC
Q 026389           76 LNGPEDVCVDR-NGVLYTAT-RDGWIKRLHKN-GTWENWKL---------------IGGDTLLGITTTQENE-ILVCDAD  136 (239)
Q Consensus        76 ~~gPe~ia~d~-~G~ly~~~-~~g~I~~~~~~-G~~~~~~~---------------~~~~p~~Gl~~d~~G~-L~v~d~~  136 (239)
                      +..|.+|++++ +|.+|+++ .+++|++++.. |.+..+..               ....|. ||+++++|+ |||+|..
T Consensus       682 ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~-GIavspdG~~LYVADs~  760 (1057)
T PLN02919        682 LNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPS-GISLSPDLKELYIADSE  760 (1057)
T ss_pred             cCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCccccCCCCccccccccCcc-EEEEeCCCCEEEEEECC
Confidence            46799999998 78999887 77899999863 44433321               124689 999999986 9999998


Q ss_pred             CCeEEE-c-cCC-ceEEecc-------------cCC----ccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecC
Q 026389          137 KGLLKV-T-EEG-VTVLASH-------------VNG----SRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKP  196 (239)
Q Consensus       137 ~g~~~v-~-~~g-~~~l~~~-------------~~g----~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~  196 (239)
                      .+.+++ + .++ ..++...             .+|    ..+..|.+++++++|++||+|..                 
T Consensus       761 n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~-----------------  823 (1057)
T PLN02919        761 SSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSY-----------------  823 (1057)
T ss_pred             CCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECC-----------------
Confidence            766654 5 344 4433210             011    24668999999999999999976                 


Q ss_pred             CceEEEEeCCCCeEEEecC--------------CCCCcceEEEcCCCCEEEEEeCC
Q 026389          197 HGKLLKYDPSLNETSILLD--------------SLFFANGVALSKDEDYLVVCETF  238 (239)
Q Consensus       197 ~g~v~~~d~~~~~~~~~~~--------------~l~~pnGia~s~dg~~lyvadt~  238 (239)
                      +++|.+||++++.+..+..              .+..|.||++++||+ +||+|+.
T Consensus       824 N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~-lyVaDt~  878 (1057)
T PLN02919        824 NHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGR-LFVADTN  878 (1057)
T ss_pred             CCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCC-EEEEECC
Confidence            6899999998888766542              245799999999997 8999975

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=99.49  E-value=2.1e-12  Score=112.17  Aligned_cols=142  Identities=17%  Similarity=0.240  Sum_probs=106.0

Q ss_pred             cCCcceEEEcCCCCEEEEeCC------------CeEEEEecCCcEEEeeec-cCcCccCeEEcCCC-CEEEEeCCCCeE-
Q 026389           76 LNGPEDVCVDRNGVLYTATRD------------GWIKRLHKNGTWENWKLI-GGDTLLGITTTQEN-EILVCDADKGLL-  140 (239)
Q Consensus        76 ~~gPe~ia~d~~G~ly~~~~~------------g~I~~~~~~G~~~~~~~~-~~~p~~Gl~~d~~G-~L~v~d~~~g~~-  140 (239)
                      ...|.+..++++|++|+++..            |.|||++++|+++..... ...|+ ||++++|| .||++|+..+.+ 
T Consensus       110 ~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~N-Gla~SpDg~tly~aDT~~~~i~  188 (307)
T COG3386         110 LNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPN-GLAFSPDGKTLYVADTPANRIH  188 (307)
T ss_pred             cCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEecC-ceEECCCCCEEEEEeCCCCeEE
Confidence            578999999999999998733            689999988877665555 78899 99999999 799999885544 


Q ss_pred             EEc-c--CC----ce--EEecccCCccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEE
Q 026389          141 KVT-E--EG----VT--VLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETS  211 (239)
Q Consensus       141 ~v~-~--~g----~~--~l~~~~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~  211 (239)
                      +++ .  ++    ..  +..+...    ..|+|+++|.+|++|++...                +.++|.+|+|+++.+.
T Consensus       189 r~~~d~~~g~~~~~~~~~~~~~~~----G~PDG~~vDadG~lw~~a~~----------------~g~~v~~~~pdG~l~~  248 (307)
T COG3386         189 RYDLDPATGPIGGRRGFVDFDEEP----GLPDGMAVDADGNLWVAAVW----------------GGGRVVRFNPDGKLLG  248 (307)
T ss_pred             EEecCcccCccCCcceEEEccCCC----CCCCceEEeCCCCEEEeccc----------------CCceEEEECCCCcEEE
Confidence            444 2  23    11  1111212    46999999999999974322                1249999999966666


Q ss_pred             EecCCCCCcceEEE-cCCCCEEEEEeCC
Q 026389          212 ILLDSLFFANGVAL-SKDEDYLVVCETF  238 (239)
Q Consensus       212 ~~~~~l~~pnGia~-s~dg~~lyvadt~  238 (239)
                      .+.-....|..+|| .++.++|||+-+.
T Consensus       249 ~i~lP~~~~t~~~FgG~~~~~L~iTs~~  276 (307)
T COG3386         249 EIKLPVKRPTNPAFGGPDLNTLYITSAR  276 (307)
T ss_pred             EEECCCCCCccceEeCCCcCEEEEEecC
Confidence            66555578899998 5788999998653

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=99.48  E-value=1.6e-12  Score=108.59  Aligned_cols=147  Identities=16%  Similarity=0.187  Sum_probs=110.6

Q ss_pred             eEeccCCcCCcceEEEcCCCCEEEEe-CCCeEEEEec-CCcEEEee-eccCcCccCeEEcCCCCEEEEeCCCCeEEEcc-
Q 026389           69 TRLGEGILNGPEDVCVDRNGVLYTAT-RDGWIKRLHK-NGTWENWK-LIGGDTLLGITTTQENEILVCDADKGLLKVTE-  144 (239)
Q Consensus        69 ~~l~~g~~~gPe~ia~d~~G~ly~~~-~~g~I~~~~~-~G~~~~~~-~~~~~p~~Gl~~d~~G~L~v~d~~~g~~~v~~-  144 (239)
                      .......-.+|.+++.++||.+|++. ..|-|-++|+ +|+++.+. ..+.+|+ |+.+++||..|+||...++.++++ 
T Consensus        54 ~~fpvp~G~ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Ph-giv~gpdg~~Witd~~~aI~R~dpk  132 (353)
T COG4257          54 AEFPVPNGSAPFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPH-GIVVGPDGSAWITDTGLAIGRLDPK  132 (353)
T ss_pred             ceeccCCCCCccccccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCc-eEEECCCCCeeEecCcceeEEecCc
Confidence            33444445789999999999888665 7889999997 68887664 3567899 999999999999999999999994 


Q ss_pred             CC-ceEEecccCCccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecC-CCCCcce
Q 026389          145 EG-VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLD-SLFFANG  222 (239)
Q Consensus       145 ~g-~~~l~~~~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~-~l~~pnG  222 (239)
                      +. ++.+--..+ ..-...|..++|++|++|||...                  |.-=|+||.++.+++.-. --..|+|
T Consensus       133 t~evt~f~lp~~-~a~~nlet~vfD~~G~lWFt~q~------------------G~yGrLdPa~~~i~vfpaPqG~gpyG  193 (353)
T COG4257         133 TLEVTRFPLPLE-HADANLETAVFDPWGNLWFTGQI------------------GAYGRLDPARNVISVFPAPQGGGPYG  193 (353)
T ss_pred             ccceEEeecccc-cCCCcccceeeCCCccEEEeecc------------------ccceecCcccCceeeeccCCCCCCcc
Confidence            65 544421111 12234688999999999999875                  223378888777776643 3457999


Q ss_pred             EEEcCCCCEEEEEe
Q 026389          223 VALSKDEDYLVVCE  236 (239)
Q Consensus       223 ia~s~dg~~lyvad  236 (239)
                      ||.+|||+ ||+++
T Consensus       194 i~atpdGs-vwyas  206 (353)
T COG4257         194 ICATPDGS-VWYAS  206 (353)
T ss_pred             eEECCCCc-EEEEe
Confidence            99999998 66664

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=99.18  E-value=4.5e-10  Score=98.94  Aligned_cols=157  Identities=23%  Similarity=0.290  Sum_probs=101.5

Q ss_pred             CCcceEEEcCCCCEEEEeCCCeEEEEecCCcE-EEeee-------ccCcCccCeEEcCC----CCEEEEeCCC-------
Q 026389           77 NGPEDVCVDRNGVLYTATRDGWIKRLHKNGTW-ENWKL-------IGGDTLLGITTTQE----NEILVCDADK-------  137 (239)
Q Consensus        77 ~gPe~ia~d~~G~ly~~~~~g~I~~~~~~G~~-~~~~~-------~~~~p~~Gl~~d~~----G~L~v~d~~~-------  137 (239)
                      ..|.+|++.|||++|++...|+|++++.+|.. ..+..       .....+ |++++++    +.|||+-...       
T Consensus         2 ~~P~~~a~~pdG~l~v~e~~G~i~~~~~~g~~~~~v~~~~~v~~~~~~gll-gia~~p~f~~n~~lYv~~t~~~~~~~~~   80 (331)
T PF07995_consen    2 NNPRSMAFLPDGRLLVAERSGRIWVVDKDGSLKTPVADLPEVFADGERGLL-GIAFHPDFASNGYLYVYYTNADEDGGDN   80 (331)
T ss_dssp             SSEEEEEEETTSCEEEEETTTEEEEEETTTEECEEEEE-TTTBTSTTBSEE-EEEE-TTCCCC-EEEEEEEEE-TSSSSE
T ss_pred             CCceEEEEeCCCcEEEEeCCceEEEEeCCCcCcceecccccccccccCCcc-cceeccccCCCCEEEEEEEcccCCCCCc
Confidence            57999999999999999999999999977765 33222       123457 9999984    7899986532       


Q ss_pred             --CeEEEc--cC-C----ceEEecccC--CccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCC
Q 026389          138 --GLLKVT--EE-G----VTVLASHVN--GSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPS  206 (239)
Q Consensus       138 --g~~~v~--~~-g----~~~l~~~~~--g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~  206 (239)
                        .++++.  .+ .    .+++.....  ....+....|+++|||.||++-.....  .+...+  .....|+|+|++++
T Consensus        81 ~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~--~~~~~~--~~~~~G~ilri~~d  156 (331)
T PF07995_consen   81 DNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGN--DDNAQD--PNSLRGKILRIDPD  156 (331)
T ss_dssp             EEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTT--GGGGCS--TTSSTTEEEEEETT
T ss_pred             ceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCC--cccccc--cccccceEEEeccc
Confidence              344443  22 1    233432211  123455678999999999998765322  110011  12346899999988


Q ss_pred             CC-------------eEEEecCCCCCcceEEEcCCCCEEEEEeCC
Q 026389          207 LN-------------ETSILLDSLFFANGVALSKDEDYLVVCETF  238 (239)
Q Consensus       207 ~~-------------~~~~~~~~l~~pnGia~s~dg~~lyvadt~  238 (239)
                      +.             ..++++.++.+|.|++|+|....||++|-+
T Consensus       157 G~~p~dnP~~~~~~~~~~i~A~GlRN~~~~~~d~~tg~l~~~d~G  201 (331)
T PF07995_consen  157 GSIPADNPFVGDDGADSEIYAYGLRNPFGLAFDPNTGRLWAADNG  201 (331)
T ss_dssp             SSB-TTSTTTTSTTSTTTEEEE--SEEEEEEEETTTTEEEEEEE-
T ss_pred             CcCCCCCccccCCCceEEEEEeCCCccccEEEECCCCcEEEEccC
Confidence            54             356778899999999999994458998864

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=99.17  E-value=6.1e-09  Score=94.63  Aligned_cols=169  Identities=18%  Similarity=0.202  Sum_probs=110.0

Q ss_pred             cceEeccCCcCCcceEEEcCCCCEEEEeC-CCeEEEEecCC-cEEEe-------ee-ccCcCccCeEEcCC-------CC
Q 026389           67 SVTRLGEGILNGPEDVCVDRNGVLYTATR-DGWIKRLHKNG-TWENW-------KL-IGGDTLLGITTTQE-------NE  129 (239)
Q Consensus        67 ~~~~l~~g~~~gPe~ia~d~~G~ly~~~~-~g~I~~~~~~G-~~~~~-------~~-~~~~p~~Gl~~d~~-------G~  129 (239)
                      +++.+.++ +..|.+|++.+||++|++.. .|+|++++.++ ..+..       .. ..+..+ ||+++++       +.
T Consensus        21 ~~~~va~G-L~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLl-glal~PdF~~~~~n~~   98 (454)
T TIGR03606        21 DKKVLLSG-LNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLL-GLALHPDFMQEKGNPY   98 (454)
T ss_pred             EEEEEECC-CCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCcee-eEEECCCccccCCCcE
Confidence            35777777 89999999999999999997 69999998643 22111       11 235577 9999865       36


Q ss_pred             EEEEeC----------CCCeEEEc--cC-C----ceEEecccCCccccccccEEEcCCCCEEEEeCCCCcC------ccc
Q 026389          130 ILVCDA----------DKGLLKVT--EE-G----VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFG------LHN  186 (239)
Q Consensus       130 L~v~d~----------~~g~~~v~--~~-g----~~~l~~~~~g~~~~~pn~l~vd~dG~iy~td~~~~~~------~~~  186 (239)
                      |||+-+          ...+.++.  .+ .    .+.+.........++--.|++++||.|||+-......      ...
T Consensus        99 lYvsyt~~~~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~LYVs~GD~g~~~~~n~~~~~  178 (454)
T TIGR03606        99 VYISYTYKNGDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGKIYYTIGEQGRNQGANFFLPN  178 (454)
T ss_pred             EEEEEeccCCCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCcEEEEECCCCCCCcccccCcc
Confidence            999842          23455543  22 1    2334332222223456689999999999986553110      000


Q ss_pred             ccc-----cce----eecCCceEEEEeCCCC-----------eEEEecCCCCCcceEEEcCCCCEEEEEeCC
Q 026389          187 WGL-----DLL----EAKPHGKLLKYDPSLN-----------ETSILLDSLFFANGVALSKDEDYLVVCETF  238 (239)
Q Consensus       187 ~~~-----~~~----e~~~~g~v~~~d~~~~-----------~~~~~~~~l~~pnGia~s~dg~~lyvadt~  238 (239)
                      ..+     +.+    ...-.|+|+|+|+++.           ..++..-++.+|.|++|+|+|+ ||++|-+
T Consensus       179 ~aQ~~~~~~~~~~~d~~~~~GkILRin~DGsiP~dNPf~~g~~~eIyA~G~RNp~Gla~dp~G~-Lw~~e~G  249 (454)
T TIGR03606       179 QAQHTPTQQELNGKDYHAYMGKVLRLNLDGSIPKDNPSINGVVSHIFTYGHRNPQGLAFTPDGT-LYASEQG  249 (454)
T ss_pred             hhccccccccccccCcccCceEEEEEcCCCCCCCCCCccCCCcceEEEEeccccceeEECCCCC-EEEEecC
Confidence            000     000    0124689999999853           2367788999999999999876 8999865

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.13  E-value=5.9e-09  Score=91.32  Aligned_cols=152  Identities=8%  Similarity=0.125  Sum_probs=100.1

Q ss_pred             ccccceEeccCCcCCcceEEEcCCCC-EEEEe-CCCeEEEEe--cCCcEEEee--eccCcCccCeEEcCCCC-EEEEeCC
Q 026389           64 DIQSVTRLGEGILNGPEDVCVDRNGV-LYTAT-RDGWIKRLH--KNGTWENWK--LIGGDTLLGITTTQENE-ILVCDAD  136 (239)
Q Consensus        64 ~l~~~~~l~~g~~~gPe~ia~d~~G~-ly~~~-~~g~I~~~~--~~G~~~~~~--~~~~~p~~Gl~~d~~G~-L~v~d~~  136 (239)
                      .|..++.+..+  ..|..++++++|+ ||++. .++.|..|+  .+|+++...  ...+.|. +++++++|+ ||++...
T Consensus        24 ~l~~~~~~~~~--~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p~-~i~~~~~g~~l~v~~~~  100 (330)
T PRK11028         24 ALTLLQVVDVP--GQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGSPT-HISTDHQGRFLFSASYN  100 (330)
T ss_pred             ceeeeeEEecC--CCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCCce-EEEECCCCCEEEEEEcC
Confidence            44445555443  5789999999886 78876 678785554  346553222  2346788 999999995 8888766


Q ss_pred             CCeEEEc---cCC-ceEEecccCCccccccccEEEcCCC-CEEEEeCCCCcCcccccccceeecCCceEEEEeCCC-CeE
Q 026389          137 KGLLKVT---EEG-VTVLASHVNGSRINLADDLIAATDG-SIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSL-NET  210 (239)
Q Consensus       137 ~g~~~v~---~~g-~~~l~~~~~g~~~~~pn~l~vd~dG-~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~-~~~  210 (239)
                      .+.+.+.   .+| .........+  ...|..++++|+| .+|+++..                 .++|..||.++ +.+
T Consensus       101 ~~~v~v~~~~~~g~~~~~~~~~~~--~~~~~~~~~~p~g~~l~v~~~~-----------------~~~v~v~d~~~~g~l  161 (330)
T PRK11028        101 ANCVSVSPLDKDGIPVAPIQIIEG--LEGCHSANIDPDNRTLWVPCLK-----------------EDRIRLFTLSDDGHL  161 (330)
T ss_pred             CCeEEEEEECCCCCCCCceeeccC--CCcccEeEeCCCCCEEEEeeCC-----------------CCEEEEEEECCCCcc
Confidence            6655443   355 3222222222  2458899999998 67788754                 47788888754 333


Q ss_pred             EE------ecCCCCCcceEEEcCCCCEEEEEeC
Q 026389          211 SI------LLDSLFFANGVALSKDEDYLVVCET  237 (239)
Q Consensus       211 ~~------~~~~l~~pnGia~s~dg~~lyvadt  237 (239)
                      ..      -...-..|.+++|+|||+++||++.
T Consensus       162 ~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~  194 (330)
T PRK11028        162 VAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNE  194 (330)
T ss_pred             cccCCCceecCCCCCCceEEECCCCCEEEEEec
Confidence            21      1122457999999999999999874

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=99.08  E-value=4.8e-09  Score=87.98  Aligned_cols=151  Identities=16%  Similarity=0.194  Sum_probs=111.9

Q ss_pred             eEeccCCcCCcceEEEcCCCCEEEEe-CCCeEEEEec-CCcEEEeeeccC---cCccCeEEcCCCCEEEEeCCCCeE-EE
Q 026389           69 TRLGEGILNGPEDVCVDRNGVLYTAT-RDGWIKRLHK-NGTWENWKLIGG---DTLLGITTTQENEILVCDADKGLL-KV  142 (239)
Q Consensus        69 ~~l~~g~~~gPe~ia~d~~G~ly~~~-~~g~I~~~~~-~G~~~~~~~~~~---~p~~Gl~~d~~G~L~v~d~~~g~~-~v  142 (239)
                      +.....+-.+|.||+..++|.+|+++ .++-|.++|+ +|..+++.....   ... .+-.|+.|++|+++.+.+.+ ++
T Consensus       181 ~vfpaPqG~gpyGi~atpdGsvwyaslagnaiaridp~~~~aev~p~P~~~~~gsR-riwsdpig~~wittwg~g~l~rf  259 (353)
T COG4257         181 SVFPAPQGGGPYGICATPDGSVWYASLAGNAIARIDPFAGHAEVVPQPNALKAGSR-RIWSDPIGRAWITTWGTGSLHRF  259 (353)
T ss_pred             eeeccCCCCCCcceEECCCCcEEEEeccccceEEcccccCCcceecCCCccccccc-ccccCccCcEEEeccCCceeeEe
Confidence            44444556799999999999999887 7889999997 565555543322   223 56678999999999887655 55


Q ss_pred             ccCCceEEecccCCccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecCCCCCcce
Q 026389          143 TEEGVTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANG  222 (239)
Q Consensus       143 ~~~g~~~l~~~~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~~l~~pnG  222 (239)
                      ++.-.....-...+.. -.|.++-||..|++|++|..                 .|.|.||||.+.+.+++.-.-.+++.
T Consensus       260 dPs~~sW~eypLPgs~-arpys~rVD~~grVW~sea~-----------------agai~rfdpeta~ftv~p~pr~n~gn  321 (353)
T COG4257         260 DPSVTSWIEYPLPGSK-ARPYSMRVDRHGRVWLSEAD-----------------AGAIGRFDPETARFTVLPIPRPNSGN  321 (353)
T ss_pred             CcccccceeeeCCCCC-CCcceeeeccCCcEEeeccc-----------------cCceeecCcccceEEEecCCCCCCCc
Confidence            6533222211222221 35899999999999999987                 58899999999999988877778888


Q ss_pred             EEEcCCCCEEEEEeCC
Q 026389          223 VALSKDEDYLVVCETF  238 (239)
Q Consensus       223 ia~s~dg~~lyvadt~  238 (239)
                      +++..-...++.+|.+
T Consensus       322 ~ql~gr~ge~W~~e~g  337 (353)
T COG4257         322 IQLDGRPGELWFTEAG  337 (353)
T ss_pred             eeccCCCCceeecccC
Confidence            9998877778888865

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=99.05  E-value=2.6e-08  Score=89.40  Aligned_cols=144  Identities=18%  Similarity=0.284  Sum_probs=107.1

Q ss_pred             CCcceEEEcCCC-CEEEEeC---CCeEEEEecC-CcEEEeeeccCcCccCeEEcCCCC-EEEEeCCCCeEEE-ccCCceE
Q 026389           77 NGPEDVCVDRNG-VLYTATR---DGWIKRLHKN-GTWENWKLIGGDTLLGITTTQENE-ILVCDADKGLLKV-TEEGVTV  149 (239)
Q Consensus        77 ~gPe~ia~d~~G-~ly~~~~---~g~I~~~~~~-G~~~~~~~~~~~p~~Gl~~d~~G~-L~v~d~~~g~~~v-~~~g~~~  149 (239)
                      ..|.+++++++| .+|+++.   +++|..+|.. ++.......+..|. |++++++|+ +||++...+.+.+ +.++..+
T Consensus       116 ~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P~-~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v  194 (381)
T COG3391         116 LGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTPT-GVAVDPDGNKVYVTNSDDNTVSVIDTSGNSV  194 (381)
T ss_pred             cCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCcc-eEEECCCCCeEEEEecCCCeEEEEeCCCcce
Confidence            389999999976 8999884   6899999975 44444455566788 999999996 9999977666655 4444222


Q ss_pred             Eeccc--CCccccccccEEEcCCC-CEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEe---cCCCCCcceE
Q 026389          150 LASHV--NGSRINLADDLIAATDG-SIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSIL---LDSLFFANGV  223 (239)
Q Consensus       150 l~~~~--~g~~~~~pn~l~vd~dG-~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~---~~~l~~pnGi  223 (239)
                      .....  .-..+..|.+++++++| ++|+++..+.               .+++.++|..++.+...   ...+ .|.++
T Consensus       195 ~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~---------------~~~v~~id~~~~~v~~~~~~~~~~-~~~~v  258 (381)
T COG3391         195 VRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSG---------------SNNVLKIDTATGNVTATDLPVGSG-APRGV  258 (381)
T ss_pred             eccccccccccCCCCceEEECCCCCEEEEEeccCC---------------CceEEEEeCCCceEEEeccccccC-CCCce
Confidence            21110  11245679999999999 4999986521               37899999988776554   3445 79999


Q ss_pred             EEcCCCCEEEEEeC
Q 026389          224 ALSKDEDYLVVCET  237 (239)
Q Consensus       224 a~s~dg~~lyvadt  237 (239)
                      +++|+|+.+||++.
T Consensus       259 ~~~p~g~~~yv~~~  272 (381)
T COG3391         259 AVDPAGKAAYVANS  272 (381)
T ss_pred             eECCCCCEEEEEec
Confidence            99999999999864

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.03  E-value=2e-08  Score=87.95  Aligned_cols=143  Identities=11%  Similarity=0.143  Sum_probs=90.7

Q ss_pred             CCcceEEEcCCCC-EEEEe-CCCeEEEEec--CCcEE-Ee--eeccCcCccCeEEcCCC-CEEEEeCCCCeEEEc---cC
Q 026389           77 NGPEDVCVDRNGV-LYTAT-RDGWIKRLHK--NGTWE-NW--KLIGGDTLLGITTTQEN-EILVCDADKGLLKVT---EE  145 (239)
Q Consensus        77 ~gPe~ia~d~~G~-ly~~~-~~g~I~~~~~--~G~~~-~~--~~~~~~p~~Gl~~d~~G-~L~v~d~~~g~~~v~---~~  145 (239)
                      ..|.+++++++|+ +|++. .+++|..|+.  +|... ..  ......|+ +++++++| .+||++...+.+.+.   .+
T Consensus        80 ~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~-~~~~~p~g~~l~v~~~~~~~v~v~d~~~~  158 (330)
T PRK11028         80 GSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCH-SANIDPDNRTLWVPCLKEDRIRLFTLSDD  158 (330)
T ss_pred             CCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCccc-EeEeCCCCCEEEEeeCCCCEEEEEEECCC
Confidence            3689999999885 77776 5788777764  45321 11  12235689 99999998 588999887777664   23


Q ss_pred             C-ceEE-ecccCCccccccccEEEcCCC-CEEEEeCCCCcCcccccccceeecCCceEEEEeCC--CCeEEEecC-----
Q 026389          146 G-VTVL-ASHVNGSRINLADDLIAATDG-SIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPS--LNETSILLD-----  215 (239)
Q Consensus       146 g-~~~l-~~~~~g~~~~~pn~l~vd~dG-~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~--~~~~~~~~~-----  215 (239)
                      | .... .....-..-..|.++++++|| .+|+++..                 .+.|..|+.+  +++++.+..     
T Consensus       159 g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~-----------------~~~v~v~~~~~~~~~~~~~~~~~~~p  221 (330)
T PRK11028        159 GHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNEL-----------------NSSVDVWQLKDPHGEIECVQTLDMMP  221 (330)
T ss_pred             CcccccCCCceecCCCCCCceEEECCCCCEEEEEecC-----------------CCEEEEEEEeCCCCCEEEEEEEecCC
Confidence            4 2211 000000112458999999999 57888753                 3566666543  444433221     


Q ss_pred             ----CCCCcceEEEcCCCCEEEEEeC
Q 026389          216 ----SLFFANGVALSKDEDYLVVCET  237 (239)
Q Consensus       216 ----~l~~pnGia~s~dg~~lyvadt  237 (239)
                          +...+.+|+++|||+++|+++.
T Consensus       222 ~~~~~~~~~~~i~~~pdg~~lyv~~~  247 (330)
T PRK11028        222 ADFSDTRWAADIHITPDGRHLYACDR  247 (330)
T ss_pred             CcCCCCccceeEEECCCCCEEEEecC
Confidence                1224557999999999999864

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=98.99  E-value=4.2e-08  Score=88.05  Aligned_cols=141  Identities=19%  Similarity=0.227  Sum_probs=103.7

Q ss_pred             CCcceEEEcCCCC-EEEEe-CCCeEEEEecCC-cEEEeeeccCcCccCeEEcCCC-CEEEEeCC--CCeEEE-ccCCceE
Q 026389           77 NGPEDVCVDRNGV-LYTAT-RDGWIKRLHKNG-TWENWKLIGGDTLLGITTTQEN-EILVCDAD--KGLLKV-TEEGVTV  149 (239)
Q Consensus        77 ~gPe~ia~d~~G~-ly~~~-~~g~I~~~~~~G-~~~~~~~~~~~p~~Gl~~d~~G-~L~v~d~~--~g~~~v-~~~g~~~  149 (239)
                      ..|.++++.+.|. +|+.. ..+.|..++... +.......+..|. +++++++| .+||++..  .+.+.+ +....++
T Consensus        74 ~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~~P~-~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~  152 (381)
T COG3391          74 VYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGLGPV-GLAVDPDGKYVYVANAGNGNNTVSVIDAATNKV  152 (381)
T ss_pred             ccccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeeccCCc-eEEECCCCCEEEEEecccCCceEEEEeCCCCeE
Confidence            6799999998775 99887 568999998432 3333344556899 99999998 79999984  455544 4332222


Q ss_pred             EecccCCccccccccEEEcCCCC-EEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEE-----ecCCCCCcceE
Q 026389          150 LASHVNGSRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSI-----LLDSLFFANGV  223 (239)
Q Consensus       150 l~~~~~g~~~~~pn~l~vd~dG~-iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~-----~~~~l~~pnGi  223 (239)
                      +.....|   ..|-+++++++|. +|+++..                 .++|..+|.++..+..     .......|.++
T Consensus       153 ~~~~~vG---~~P~~~a~~p~g~~vyv~~~~-----------------~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i  212 (381)
T COG3391         153 TATIPVG---NTPTGVAVDPDGNKVYVTNSD-----------------DNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGI  212 (381)
T ss_pred             EEEEecC---CCcceEEECCCCCeEEEEecC-----------------CCeEEEEeCCCcceeccccccccccCCCCceE
Confidence            2223333   2468999999995 9999955                 5899999987666553     24456789999


Q ss_pred             EEcCCCCEEEEEeCC
Q 026389          224 ALSKDEDYLVVCETF  238 (239)
Q Consensus       224 a~s~dg~~lyvadt~  238 (239)
                      ++++||+.+||++..
T Consensus       213 ~v~~~g~~~yV~~~~  227 (381)
T COG3391         213 AVDPDGNRVYVANDG  227 (381)
T ss_pred             EECCCCCEEEEEecc
Confidence            999999999999865

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=98.99  E-value=3e-08  Score=87.76  Aligned_cols=144  Identities=17%  Similarity=0.243  Sum_probs=94.2

Q ss_pred             cCCcceEEEcCCCC-EEEEe-CCCeEEEEecCC---cEEE----eeeccCcCccCeEEcCCC-CEEEEeCCCCeEEE-c-
Q 026389           76 LNGPEDVCVDRNGV-LYTAT-RDGWIKRLHKNG---TWEN----WKLIGGDTLLGITTTQEN-EILVCDADKGLLKV-T-  143 (239)
Q Consensus        76 ~~gPe~ia~d~~G~-ly~~~-~~g~I~~~~~~G---~~~~----~~~~~~~p~~Gl~~d~~G-~L~v~d~~~g~~~v-~-  143 (239)
                      ...|..+.++|+|+ +|+.+ ...+|+.++.+.   +++.    -...+..|. .++|+++| .+||++...+.+.+ + 
T Consensus       143 ~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPR-h~~f~pdg~~~Yv~~e~s~~v~v~~~  221 (345)
T PF10282_consen  143 GPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPR-HLAFSPDGKYAYVVNELSNTVSVFDY  221 (345)
T ss_dssp             STCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEE-EEEE-TTSSEEEEEETTTTEEEEEEE
T ss_pred             cccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCc-EEEEcCCcCEEEEecCCCCcEEEEee
Confidence            45678899999885 77777 677888877532   3422    124566788 99999998 58999877665543 3 


Q ss_pred             --cCC-ceEEec---ccCCc-cccccccEEEcCCC-CEEEEeCCCCcCcccccccceeecCCceE--EEEeCCCCeEEEe
Q 026389          144 --EEG-VTVLAS---HVNGS-RINLADDLIAATDG-SIYFSVASTKFGLHNWGLDLLEAKPHGKL--LKYDPSLNETSIL  213 (239)
Q Consensus       144 --~~g-~~~l~~---~~~g~-~~~~pn~l~vd~dG-~iy~td~~~~~~~~~~~~~~~e~~~~g~v--~~~d~~~~~~~~~  213 (239)
                        .+| .+.+..   ...+. ....+.+|++++|| .+|+++..                 .+.|  |.+|..+++++.+
T Consensus       222 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~-----------------~~sI~vf~~d~~~g~l~~~  284 (345)
T PF10282_consen  222 DPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRG-----------------SNSISVFDLDPATGTLTLV  284 (345)
T ss_dssp             ETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECT-----------------TTEEEEEEECTTTTTEEEE
T ss_pred             cccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEecc-----------------CCEEEEEEEecCCCceEEE
Confidence              255 433321   11111 22479999999999 58998865                 3444  4454566766554


Q ss_pred             c---CCCCCcceEEEcCCCCEEEEEeC
Q 026389          214 L---DSLFFANGVALSKDEDYLVVCET  237 (239)
Q Consensus       214 ~---~~l~~pnGia~s~dg~~lyvadt  237 (239)
                      .   .+..+|.+++++|||++|||++-
T Consensus       285 ~~~~~~G~~Pr~~~~s~~g~~l~Va~~  311 (345)
T PF10282_consen  285 QTVPTGGKFPRHFAFSPDGRYLYVANQ  311 (345)
T ss_dssp             EEEEESSSSEEEEEE-TTSSEEEEEET
T ss_pred             EEEeCCCCCccEEEEeCCCCEEEEEec
Confidence            3   34667999999999999999874

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]

Probab=98.97  E-value=1.4e-08  Score=99.12  Aligned_cols=135  Identities=17%  Similarity=0.248  Sum_probs=96.1

Q ss_pred             eEEEcC-CCCEEEEe-CCCeEEEEec------CCcEEEeee----------cc-----------CcCccCeEEcCCCCEE
Q 026389           81 DVCVDR-NGVLYTAT-RDGWIKRLHK------NGTWENWKL----------IG-----------GDTLLGITTTQENEIL  131 (239)
Q Consensus        81 ~ia~d~-~G~ly~~~-~~g~I~~~~~------~G~~~~~~~----------~~-----------~~p~~Gl~~d~~G~L~  131 (239)
                      -+|++| +|.||+++ ...+|+|+..      .+.+++++.          .|           ..|. |+++|++|.||
T Consensus       411 y~AvsPvdgtlyvSdp~s~qv~rv~sl~~~d~~~N~evvaG~Ge~Clp~desCGDGalA~dA~L~~Pk-GIa~dk~g~lY  489 (1899)
T KOG4659|consen  411 YIAVSPVDGTLYVSDPLSKQVWRVSSLEPQDSRNNYEVVAGDGEVCLPADESCGDGALAQDAQLIFPK-GIAFDKMGNLY  489 (1899)
T ss_pred             EEEecCcCceEEecCCCcceEEEeccCCccccccCeeEEeccCcCccccccccCcchhcccceeccCC-ceeEccCCcEE
Confidence            499999 99999998 6678999863      233444321          12           3589 99999999999


Q ss_pred             EEeCCCCeEEEccCC-ceEEecc---------------cCCccccccccEEEcC-CCCEEEEeCCCCcCcccccccceee
Q 026389          132 VCDADKGLLKVTEEG-VTVLASH---------------VNGSRINLADDLIAAT-DGSIYFSVASTKFGLHNWGLDLLEA  194 (239)
Q Consensus       132 v~d~~~g~~~v~~~g-~~~l~~~---------------~~g~~~~~pn~l~vd~-dG~iy~td~~~~~~~~~~~~~~~e~  194 (239)
                      .+|. ..+..+|.+| ++.+...               .....+.+|.+++|+| |+.+|+-|..               
T Consensus       490 faD~-t~IR~iD~~giIstlig~~~~~~~p~~C~~~~kl~~~~leWPT~LaV~Pmdnsl~Vld~n---------------  553 (1899)
T KOG4659|consen  490 FADG-TRIRVIDTTGIISTLIGTTPDQHPPRTCAQITKLVDLQLEWPTSLAVDPMDNSLLVLDTN---------------  553 (1899)
T ss_pred             Eecc-cEEEEeccCceEEEeccCCCCccCccccccccchhheeeecccceeecCCCCeEEEeecc---------------
Confidence            9997 4566778888 6655421               1223578999999999 6899999854               


Q ss_pred             cCCceEEEEeCCCCeEEEec---------------------CCCCCcceEEEcCCCCEEEEEeCC
Q 026389          195 KPHGKLLKYDPSLNETSILL---------------------DSLFFANGVALSKDEDYLVVCETF  238 (239)
Q Consensus       195 ~~~g~v~~~d~~~~~~~~~~---------------------~~l~~pnGia~s~dg~~lyvadt~  238 (239)
                          -|++++++ +++++++                     ..+..+..|+++++|- |||+||-
T Consensus       554 ----vvlrit~~-~rV~Ii~GrP~hC~~a~~t~~~skla~H~tl~~~r~Iavg~~G~-lyvaEsD  612 (1899)
T KOG4659|consen  554 ----VVLRITVV-HRVRIILGRPTHCDLANATSSASKLADHRTLLIQRDIAVGTDGA-LYVAESD  612 (1899)
T ss_pred             ----eEEEEccC-ccEEEEcCCccccccCCCchhhhhhhhhhhhhhhhceeecCCce-EEEEecc
Confidence                34455443 3333222                     1245678999999996 9999984

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=98.92  E-value=1.6e-07  Score=83.09  Aligned_cols=153  Identities=17%  Similarity=0.239  Sum_probs=99.4

Q ss_pred             ccccceEeccCCcCCcceEEEcCCC-CEEEEeC----CCeEEEE--ecC-CcEEEe---eeccCcCccCeEEcCCCC-EE
Q 026389           64 DIQSVTRLGEGILNGPEDVCVDRNG-VLYTATR----DGWIKRL--HKN-GTWENW---KLIGGDTLLGITTTQENE-IL  131 (239)
Q Consensus        64 ~l~~~~~l~~g~~~gPe~ia~d~~G-~ly~~~~----~g~I~~~--~~~-G~~~~~---~~~~~~p~~Gl~~d~~G~-L~  131 (239)
                      .|...+.+..  ...|..+++++++ .||+...    .+.|..+  +.+ |+.+..   ...+..|. .++++++|+ ||
T Consensus        26 ~l~~~~~~~~--~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~-~i~~~~~g~~l~  102 (345)
T PF10282_consen   26 TLTLVQTVAE--GENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPC-HIAVDPDGRFLY  102 (345)
T ss_dssp             EEEEEEEEEE--SSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEE-EEEECTTSSEEE
T ss_pred             CceEeeeecC--CCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcE-EEEEecCCCEEE
Confidence            4444444333  5799999999865 6887764    4677554  455 665433   23567788 899999995 89


Q ss_pred             EEeCCCCeEEEc---cCC-ceEEecc---------cCCccccccccEEEcCCC-CEEEEeCCCCcCcccccccceeecCC
Q 026389          132 VCDADKGLLKVT---EEG-VTVLASH---------VNGSRINLADDLIAATDG-SIYFSVASTKFGLHNWGLDLLEAKPH  197 (239)
Q Consensus       132 v~d~~~g~~~v~---~~g-~~~l~~~---------~~g~~~~~pn~l~vd~dG-~iy~td~~~~~~~~~~~~~~~e~~~~  197 (239)
                      |++...|.+.+.   .+| .......         ...+.-.+|..+.++||| .+|++|..                 .
T Consensus       103 vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG-----------------~  165 (345)
T PF10282_consen  103 VANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLG-----------------A  165 (345)
T ss_dssp             EEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETT-----------------T
T ss_pred             EEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecC-----------------C
Confidence            998877766553   457 3222110         111234578899999998 58899865                 4


Q ss_pred             ceEEEEeCCCCe--EEE----ecCCCCCcceEEEcCCCCEEEEEe
Q 026389          198 GKLLKYDPSLNE--TSI----LLDSLFFANGVALSKDEDYLVVCE  236 (239)
Q Consensus       198 g~v~~~d~~~~~--~~~----~~~~l~~pnGia~s~dg~~lyvad  236 (239)
                      .+|+.|+.+...  ++.    -......|..++|+|||+++||++
T Consensus       166 D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~  210 (345)
T PF10282_consen  166 DRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVN  210 (345)
T ss_dssp             TEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEE
T ss_pred             CEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEec
Confidence            577777665433  533    235567899999999999999986

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=98.82  E-value=2.3e-07  Score=76.43  Aligned_cols=136  Identities=18%  Similarity=0.161  Sum_probs=94.0

Q ss_pred             EEcCCCCEEEEe----------CCCeEEEEecCCcEEEeeeccCcCccCeEEcCCC-CEEEEeCCCCeE---EEc-cCC-
Q 026389           83 CVDRNGVLYTAT----------RDGWIKRLHKNGTWENWKLIGGDTLLGITTTQEN-EILVCDADKGLL---KVT-EEG-  146 (239)
Q Consensus        83 a~d~~G~ly~~~----------~~g~I~~~~~~G~~~~~~~~~~~p~~Gl~~d~~G-~L~v~d~~~g~~---~v~-~~g-  146 (239)
                      -+||+|+.|.+.          ..|.++++-+.++++.+-...+-++ ||++|.+- ..|+.|+..--+   ..+ +.| 
T Consensus       115 kvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~h~v~~i~~~v~IsN-gl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~  193 (310)
T KOG4499|consen  115 KVDPDGRYYGGTMADFGDDLEPIGGELYSWLAGHQVELIWNCVGISN-GLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGD  193 (310)
T ss_pred             ccCCCCceeeeeeccccccccccccEEEEeccCCCceeeehhccCCc-cccccccCcEEEEEccCceEEeeeecCCCccc
Confidence            567889988774          2367788878888877777778999 99999665 689999765333   223 455 


Q ss_pred             ---ceEEecccCCc--cccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEE-ecCCCCCc
Q 026389          147 ---VTVLASHVNGS--RINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSI-LLDSLFFA  220 (239)
Q Consensus       147 ---~~~l~~~~~g~--~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~-~~~~l~~p  220 (239)
                         .+.+.+.-..+  ....|+|+++|.+|+||++-.+                 .|+|+++||.+|++-. +.-.-...
T Consensus       194 ~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~n-----------------g~~V~~~dp~tGK~L~eiklPt~qi  256 (310)
T KOG4499|consen  194 LSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFN-----------------GGTVQKVDPTTGKILLEIKLPTPQI  256 (310)
T ss_pred             ccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEec-----------------CcEEEEECCCCCcEEEEEEcCCCce
Confidence               34443322212  2246999999999999999866                 6899999999987532 22223455


Q ss_pred             ceEEEc-CCCCEEEEEe
Q 026389          221 NGVALS-KDEDYLVVCE  236 (239)
Q Consensus       221 nGia~s-~dg~~lyvad  236 (239)
                      ..+||. ++=+.+||+-
T Consensus       257 tsccFgGkn~d~~yvT~  273 (310)
T KOG4499|consen  257 TSCCFGGKNLDILYVTT  273 (310)
T ss_pred             EEEEecCCCccEEEEEe
Confidence            778874 4445677763

>COG2133 Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism]

Probab=98.80  E-value=2.6e-07  Score=82.51  Aligned_cols=168  Identities=16%  Similarity=0.161  Sum_probs=101.0

Q ss_pred             cceEeccCCcCCcceEEEcCCCCEEEEeCC-CeEEEEecCC--------cEEEe----------------eeccCcCccC
Q 026389           67 SVTRLGEGILNGPEDVCVDRNGVLYTATRD-GWIKRLHKNG--------TWENW----------------KLIGGDTLLG  121 (239)
Q Consensus        67 ~~~~l~~g~~~gPe~ia~d~~G~ly~~~~~-g~I~~~~~~G--------~~~~~----------------~~~~~~p~~G  121 (239)
                      ..+.+..| +..|.++++.++|.+.+.... |++..+...+        ...++                ......++ +
T Consensus        58 ~~~~~a~g-Le~p~~~~~lP~G~~~v~er~~G~l~~i~~g~~~~~~~~~~~~~~~~~~~Gll~~al~~~fa~~~~~~~-~  135 (399)
T COG2133          58 SVEVVAQG-LEHPWGLARLPDGVLLVTERPTGRLRLISDGGSASPPVSTVPIVLLRGQGGLLDIALSPDFAQGRLVYF-G  135 (399)
T ss_pred             eccccccc-ccCchhheecCCceEEEEccCCccEEEecCCCcccccccccceEEeccCCCccceEecccccccceeee-E
Confidence            35666777 889999999999966666644 7777665221        11111                11222344 5


Q ss_pred             eEEcCCCCEEEEeCCCCeEEEc-cCC----ceEEecccCCccccccccEEEcCCCCEEEEeCCCCcC-----cccccccc
Q 026389          122 ITTTQENEILVCDADKGLLKVT-EEG----VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFG-----LHNWGLDL  191 (239)
Q Consensus       122 l~~d~~G~L~v~d~~~g~~~v~-~~g----~~~l~~~~~g~~~~~pn~l~vd~dG~iy~td~~~~~~-----~~~~~~~~  191 (239)
                      ++. ..+.+|++.. ..+.+++ .+.    .+++.....+...++--.|+++|||.||++-.+....     .......+
T Consensus       136 ~a~-~~~~~~~~n~-~~~~~~~~g~~~l~~~~~i~~~lP~~~~H~g~~l~f~pDG~Lyvs~G~~~~~~~aq~~~~~~Gk~  213 (399)
T COG2133         136 ISE-PGGGLYVANR-VAIGRLPGGDTKLSEPKVIFRGIPKGGHHFGGRLVFGPDGKLYVTTGSNGDPALAQDNVSLAGKV  213 (399)
T ss_pred             EEe-ecCCceEEEE-EEEEEcCCCccccccccEEeecCCCCCCcCcccEEECCCCcEEEEeCCCCCcccccCccccccce
Confidence            554 3445555544 2344444 111    2344444444446778899999999999997663111     01111122


Q ss_pred             eeecCCceEEEEeCCCCeEEEecCCCCCcceEEEcCCCCEEEEEeCCC
Q 026389          192 LEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCETFK  239 (239)
Q Consensus       192 ~e~~~~g~v~~~d~~~~~~~~~~~~l~~pnGia~s~dg~~lyvadt~~  239 (239)
                      ++... ..+...|+.+...++...++.+|.|+++.|....||++|-++
T Consensus       214 ~r~~~-a~~~~~d~p~~~~~i~s~G~RN~qGl~w~P~tg~Lw~~e~g~  260 (399)
T COG2133         214 LRIDR-AGIIPADNPFPNSEIWSYGHRNPQGLAWHPVTGALWTTEHGP  260 (399)
T ss_pred             eeecc-CcccccCCCCCCcceEEeccCCccceeecCCCCcEEEEecCC
Confidence            22222 234455666667788889999999999999966799998653

>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]

Probab=98.79  E-value=1.9e-07  Score=91.33  Aligned_cols=155  Identities=18%  Similarity=0.249  Sum_probs=98.0

Q ss_pred             CcCCcceEEEcCCCCEEEEeCCCeEEEEecCCcEEEeee--------------------ccCcCccCeEEcC-CCCEEEE
Q 026389           75 ILNGPEDVCVDRNGVLYTATRDGWIKRLHKNGTWENWKL--------------------IGGDTLLGITTTQ-ENEILVC  133 (239)
Q Consensus        75 ~~~gPe~ia~d~~G~ly~~~~~g~I~~~~~~G~~~~~~~--------------------~~~~p~~Gl~~d~-~G~L~v~  133 (239)
                      ++..|.||++|++|.||+.+.. +|.++|.+|-+.++..                    ....|. .|+++| ||.|||.
T Consensus       473 ~L~~PkGIa~dk~g~lYfaD~t-~IR~iD~~giIstlig~~~~~~~p~~C~~~~kl~~~~leWPT-~LaV~Pmdnsl~Vl  550 (1899)
T KOG4659|consen  473 QLIFPKGIAFDKMGNLYFADGT-RIRVIDTTGIISTLIGTTPDQHPPRTCAQITKLVDLQLEWPT-SLAVDPMDNSLLVL  550 (1899)
T ss_pred             eeccCCceeEccCCcEEEeccc-EEEEeccCceEEEeccCCCCccCccccccccchhheeeeccc-ceeecCCCCeEEEe
Confidence            4678999999999999998743 7888887775443311                    124688 999996 5679999


Q ss_pred             eCCCCeEEEccCC-ceEEecc----------------cCCccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecC
Q 026389          134 DADKGLLKVTEEG-VTVLASH----------------VNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKP  196 (239)
Q Consensus       134 d~~~g~~~v~~~g-~~~l~~~----------------~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~  196 (239)
                      |. +=++++++++ +.++...                .....+..+.+++|.++|.||++++..+--  +   -+-.-..
T Consensus       551 d~-nvvlrit~~~rV~Ii~GrP~hC~~a~~t~~~skla~H~tl~~~r~Iavg~~G~lyvaEsD~rri--N---rvr~~~t  624 (1899)
T KOG4659|consen  551 DT-NVVLRITVVHRVRIILGRPTHCDLANATSSASKLADHRTLLIQRDIAVGTDGALYVAESDGRRI--N---RVRKLST  624 (1899)
T ss_pred             ec-ceEEEEccCccEEEEcCCccccccCCCchhhhhhhhhhhhhhhhceeecCCceEEEEeccchhh--h---heEEecc
Confidence            86 3456677777 6655321                122345678899999999999998763210  0   0000111


Q ss_pred             CceEEEEeCCCCe-------------EE-Eec--CCCCCcceEEEcCCCCEEEEEeCC
Q 026389          197 HGKLLKYDPSLNE-------------TS-ILL--DSLFFANGVALSKDEDYLVVCETF  238 (239)
Q Consensus       197 ~g~v~~~d~~~~~-------------~~-~~~--~~l~~pnGia~s~dg~~lyvadt~  238 (239)
                      +|+++.+......             .+ ..+  ..+..|..+|++|||. +||||.+
T Consensus       625 dg~i~ilaGa~S~C~C~~~~~cdcfs~~~~~At~A~lnsp~alaVsPdg~-v~IAD~g  681 (1899)
T KOG4659|consen  625 DGTISILAGAKSPCSCDVAACCDCFSLRDVAATQAKLNSPYALAVSPDGD-VIIADSG  681 (1899)
T ss_pred             CceEEEecCCCCCCCcccccCCccccccchhhhccccCCcceEEECCCCc-EEEecCC
Confidence            2333332211000             00 011  1256799999999997 8999986

>KOG1214 consensus Nidogen and related basement membrane protein proteins [Cell wall/membrane/envelope biogenesis; Extracellular structures]

Probab=98.77  E-value=9.1e-08  Score=90.12  Aligned_cols=142  Identities=15%  Similarity=0.112  Sum_probs=105.1

Q ss_pred             CCcceEEEcC-CCCEEEEe-CCCeEEEEecCC-cEEE-eeeccCcCccCeEEcCCC-CEEEEeCCCCeEEEc-cCC--ce
Q 026389           77 NGPEDVCVDR-NGVLYTAT-RDGWIKRLHKNG-TWEN-WKLIGGDTLLGITTTQEN-EILVCDADKGLLKVT-EEG--VT  148 (239)
Q Consensus        77 ~gPe~ia~d~-~G~ly~~~-~~g~I~~~~~~G-~~~~-~~~~~~~p~~Gl~~d~~G-~L~v~d~~~g~~~v~-~~g--~~  148 (239)
                      .-+-||+||- +..+|.++ ....|.|-..+| +.++ +....+.|- |||+|.-+ ++|++|+....+.+. .+|  .+
T Consensus      1025 ~IiVGidfDC~e~mvyWtDv~g~SI~rasL~G~Ep~ti~n~~L~SPE-GiAVDh~~Rn~ywtDS~lD~IevA~LdG~~rk 1103 (1289)
T KOG1214|consen 1025 SIIVGIDFDCRERMVYWTDVAGRSISRASLEGAEPETIVNSGLISPE-GIAVDHIRRNMYWTDSVLDKIEVALLDGSERK 1103 (1289)
T ss_pred             ceeeeeecccccceEEEeecCCCccccccccCCCCceeecccCCCcc-ceeeeeccceeeeeccccchhheeecCCceee
Confidence            3466788884 66777666 556677766666 3333 345678899 99999777 699999987777776 577  56


Q ss_pred             EEecccCCccccccccEEEcCC-CCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEec-CCCCCcceEEEc
Q 026389          149 VLASHVNGSRINLADDLIAATD-GSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILL-DSLFFANGVALS  226 (239)
Q Consensus       149 ~l~~~~~g~~~~~pn~l~vd~d-G~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~-~~l~~pnGia~s  226 (239)
                      +|...    .+..|.+|++|+= |+||+||..    .           .+-+|-+.+.++..-++++ +++.-|||+.|+
T Consensus      1104 vLf~t----dLVNPR~iv~D~~rgnLYwtDWn----R-----------enPkIets~mDG~NrRilin~DigLPNGLtfd 1164 (1289)
T KOG1214|consen 1104 VLFYT----DLVNPRAIVVDPIRGNLYWTDWN----R-----------ENPKIETSSMDGENRRILINTDIGLPNGLTFD 1164 (1289)
T ss_pred             EEEee----cccCcceEEeecccCceeecccc----c-----------cCCcceeeccCCccceEEeecccCCCCCceeC
Confidence            66532    3556899999995 699999954    2           2456777777766666655 789999999999


Q ss_pred             CCCCEEEEEeCC
Q 026389          227 KDEDYLVVCETF  238 (239)
Q Consensus       227 ~dg~~lyvadt~  238 (239)
                      |-.+.|-+.|.+
T Consensus      1165 pfs~~LCWvDAG 1176 (1289)
T KOG1214|consen 1165 PFSKLLCWVDAG 1176 (1289)
T ss_pred             cccceeeEEecC
Confidence            999999888865

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=98.72  E-value=3.2e-07  Score=81.96  Aligned_cols=104  Identities=18%  Similarity=0.193  Sum_probs=74.4

Q ss_pred             cceEeccCCcCCcceEEEcCCCCEEEEeCCCeEEEE-ecCC------cEEEeeec--------cCcCccCeEEcCCCCEE
Q 026389           67 SVTRLGEGILNGPEDVCVDRNGVLYTATRDGWIKRL-HKNG------TWENWKLI--------GGDTLLGITTTQENEIL  131 (239)
Q Consensus        67 ~~~~l~~g~~~gPe~ia~d~~G~ly~~~~~g~I~~~-~~~G------~~~~~~~~--------~~~p~~Gl~~d~~G~L~  131 (239)
                      +.+.+.++ +..|+++++.++| ||+++ ..+|+++ +.+|      +.+++...        ...++ ++++++||+||
T Consensus        63 ~~~vfa~~-l~~p~Gi~~~~~G-lyV~~-~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~-~l~~gpDG~LY  138 (367)
T TIGR02604        63 KSNVFAEE-LSMVTGLAVAVGG-VYVAT-PPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLN-SLAWGPDGWLY  138 (367)
T ss_pred             eeEEeecC-CCCccceeEecCC-EEEeC-CCeEEEEeCCCCCCCCCCccEEEEEccCCCCCccccccc-CceECCCCCEE
Confidence            34455555 7789999999998 99976 4578888 3322      44444321        23378 99999999999


Q ss_pred             EEeCC--------------------CCeEEEccCC--ceEEecccCCccccccccEEEcCCCCEEEEeCC
Q 026389          132 VCDAD--------------------KGLLKVTEEG--VTVLASHVNGSRINLADDLIAATDGSIYFSVAS  179 (239)
Q Consensus       132 v~d~~--------------------~g~~~v~~~g--~~~l~~~~~g~~~~~pn~l~vd~dG~iy~td~~  179 (239)
                      +++..                    .++++++++|  .+++..     .++.|+|++++++|++|++|..
T Consensus       139 v~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg~~~e~~a~-----G~rnp~Gl~~d~~G~l~~tdn~  203 (367)
T TIGR02604       139 FNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPDGGKLRVVAH-----GFQNPYGHSVDSWGDVFFCDND  203 (367)
T ss_pred             EecccCCCceeccCCCccCcccccCceEEEEecCCCeEEEEec-----CcCCCccceECCCCCEEEEccC
Confidence            98762                    2366777655  555532     3678999999999999999975

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]

Probab=98.70  E-value=2.8e-07  Score=80.84  Aligned_cols=136  Identities=15%  Similarity=0.236  Sum_probs=95.6

Q ss_pred             cCCcceEEEcCCC-CEEEEeCCCeEEEEecCCcE-EEee-eccC----cCccCeEEcCCCCEEEEeCCCC----------
Q 026389           76 LNGPEDVCVDRNG-VLYTATRDGWIKRLHKNGTW-ENWK-LIGG----DTLLGITTTQENEILVCDADKG----------  138 (239)
Q Consensus        76 ~~gPe~ia~d~~G-~ly~~~~~g~I~~~~~~G~~-~~~~-~~~~----~p~~Gl~~d~~G~L~v~d~~~g----------  138 (239)
                      .-.|-||+++..| .+|+++.---++.++++|+. +... +..+    ..+ ++.++++|.+|.+|+...          
T Consensus       114 CGRPLGl~f~~~ggdL~VaDAYlGL~~V~p~g~~a~~l~~~~~G~~~kf~N-~ldI~~~g~vyFTDSSsk~~~rd~~~a~  192 (376)
T KOG1520|consen  114 CGRPLGIRFDKKGGDLYVADAYLGLLKVGPEGGLAELLADEAEGKPFKFLN-DLDIDPEGVVYFTDSSSKYDRRDFVFAA  192 (376)
T ss_pred             cCCcceEEeccCCCeEEEEecceeeEEECCCCCcceeccccccCeeeeecC-ceeEcCCCeEEEeccccccchhheEEee
Confidence            4579999999865 99999988899999987754 2221 1122    357 899999999999997631          


Q ss_pred             --------eEEEcc-CC-ceEEecccCCccccccccEEEcCCCC-EEEEeCCCCcCcccccccceeecCCceEEEEeCCC
Q 026389          139 --------LLKVTE-EG-VTVLASHVNGSRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSL  207 (239)
Q Consensus       139 --------~~~v~~-~g-~~~l~~~~~g~~~~~pn~l~vd~dG~-iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~  207 (239)
                              +++.|+ .. .++|.     ..+.+|||++..+|+. +.|++.+                 ..|+.||=.++
T Consensus       193 l~g~~~GRl~~YD~~tK~~~VLl-----d~L~F~NGlaLS~d~sfvl~~Et~-----------------~~ri~rywi~g  250 (376)
T KOG1520|consen  193 LEGDPTGRLFRYDPSTKVTKVLL-----DGLYFPNGLALSPDGSFVLVAETT-----------------TARIKRYWIKG  250 (376)
T ss_pred             ecCCCccceEEecCcccchhhhh-----hcccccccccCCCCCCEEEEEeec-----------------cceeeeeEecC
Confidence                    222221 11 22222     2478999999999984 6677765                 45777775544


Q ss_pred             ---CeEEEecCCC-CCcceEEEcCCCCEEEEE
Q 026389          208 ---NETSILLDSL-FFANGVALSKDEDYLVVC  235 (239)
Q Consensus       208 ---~~~~~~~~~l-~~pnGia~s~dg~~lyva  235 (239)
                         |+.+++++++ .+|..|..+.+|++ +|+
T Consensus       251 ~k~gt~EvFa~~LPG~PDNIR~~~~G~f-WVa  281 (376)
T KOG1520|consen  251 PKAGTSEVFAEGLPGYPDNIRRDSTGHF-WVA  281 (376)
T ss_pred             CccCchhhHhhcCCCCCcceeECCCCCE-EEE
Confidence               4448888865 58999999999985 444

>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides

Probab=98.67  E-value=9.7e-08  Score=67.34  Aligned_cols=73  Identities=26%  Similarity=0.478  Sum_probs=54.6

Q ss_pred             ccEEEcCCCCEEEEeCCCCcCcccccc--cceeecCCceEEEEeCCCCeEEEecCCCCCcceEEEcCCCCEEEEEeCCC
Q 026389          163 DDLIAATDGSIYFSVASTKFGLHNWGL--DLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCETFK  239 (239)
Q Consensus       163 n~l~vd~dG~iy~td~~~~~~~~~~~~--~~~e~~~~g~v~~~d~~~~~~~~~~~~l~~pnGia~s~dg~~lyvadt~~  239 (239)
                      |||+.-...++|+|...  +-...++.  +.+-+.+.|.|..||+  ++.+++++++.+||||+++||+++|||+++.+
T Consensus         1 NDIvavG~~sFy~TNDh--yf~~~~l~~lE~~l~~~~~~Vvyyd~--~~~~~va~g~~~aNGI~~s~~~k~lyVa~~~~   75 (86)
T PF01731_consen    1 NDIVAVGPDSFYVTNDH--YFTDPFLRLLETYLGLPWGNVVYYDG--KEVKVVASGFSFANGIAISPDKKYLYVASSLA   75 (86)
T ss_pred             CCEEEECcCcEEEECch--hhCcHHHHHHHHHhcCCCceEEEEeC--CEeEEeeccCCCCceEEEcCCCCEEEEEeccC
Confidence            56666666799999765  22222221  2222456788999997  57889999999999999999999999999863

The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=98.67  E-value=4.1e-06  Score=70.95  Aligned_cols=138  Identities=17%  Similarity=0.160  Sum_probs=87.9

Q ss_pred             CCcceEEEcCCCC-EEEEe-CCCeEEEEecC-CcEEEeeeccCcCccCeEEcCCCC-EEEEeCCCCeEEE-cc-CCceEE
Q 026389           77 NGPEDVCVDRNGV-LYTAT-RDGWIKRLHKN-GTWENWKLIGGDTLLGITTTQENE-ILVCDADKGLLKV-TE-EGVTVL  150 (239)
Q Consensus        77 ~gPe~ia~d~~G~-ly~~~-~~g~I~~~~~~-G~~~~~~~~~~~p~~Gl~~d~~G~-L~v~d~~~g~~~v-~~-~g~~~l  150 (239)
                      ..|.+++++++|. +|++. .++.|..|+.+ ++..........+. .++++++|+ +|++....+.+++ +. ++ +.+
T Consensus        31 ~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~~~~g~~l~~~~~~~~~l~~~d~~~~-~~~  108 (300)
T TIGR03866        31 QRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPDPE-LFALHPNGKILYIANEDDNLVTVIDIETR-KVL  108 (300)
T ss_pred             CCCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCCcc-EEEECCCCCEEEEEcCCCCeEEEEECCCC-eEE
Confidence            4578899999886 66554 78899999964 44433223344577 889999986 6777655555554 43 33 111


Q ss_pred             ecccCCccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecCCCCCcceEEEcCCCC
Q 026389          151 ASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDED  230 (239)
Q Consensus       151 ~~~~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~~l~~pnGia~s~dg~  230 (239)
                      .....+   ..+++++++++|.++++....                ...++.||..+++.......-..|+.+++++||+
T Consensus       109 ~~~~~~---~~~~~~~~~~dg~~l~~~~~~----------------~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~  169 (300)
T TIGR03866       109 AEIPVG---VEPEGMAVSPDGKIVVNTSET----------------TNMAHFIDTKTYEIVDNVLVDQRPRFAEFTADGK  169 (300)
T ss_pred             eEeeCC---CCcceEEECCCCCEEEEEecC----------------CCeEEEEeCCCCeEEEEEEcCCCccEEEECCCCC
Confidence            111111   236889999999776654331                1345667887666543322234688999999999


Q ss_pred             EEEEE
Q 026389          231 YLVVC  235 (239)
Q Consensus       231 ~lyva  235 (239)
                      +||++
T Consensus       170 ~l~~~  174 (300)
T TIGR03866       170 ELWVS  174 (300)
T ss_pred             EEEEE
Confidence            88775

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=98.64  E-value=4.5e-06  Score=70.71  Aligned_cols=125  Identities=19%  Similarity=0.264  Sum_probs=82.8

Q ss_pred             CCEEEEe-CCCeEEEEec-CCcEEEeeeccCcCccCeEEcCCCC-EEEEeCCCCeEEE-c-cCC-c-eEEecccCCcccc
Q 026389           88 GVLYTAT-RDGWIKRLHK-NGTWENWKLIGGDTLLGITTTQENE-ILVCDADKGLLKV-T-EEG-V-TVLASHVNGSRIN  160 (239)
Q Consensus        88 G~ly~~~-~~g~I~~~~~-~G~~~~~~~~~~~p~~Gl~~d~~G~-L~v~d~~~g~~~v-~-~~g-~-~~l~~~~~g~~~~  160 (239)
                      +.+|++. .++.|..|+. +++..........+. +++++++|+ +|++....+.+.+ + .++ . ..+..   +   .
T Consensus         1 ~~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~~~~-~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~---~---~   73 (300)
T TIGR03866         1 EKAYVSNEKDNTISVIDTATLEVTRTFPVGQRPR-GITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPS---G---P   73 (300)
T ss_pred             CcEEEEecCCCEEEEEECCCCceEEEEECCCCCC-ceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccC---C---C
Confidence            3567554 7899999996 455433334456688 999999996 6777766666655 4 344 2 22211   1   2


Q ss_pred             ccccEEEcCCCC-EEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecCCCCCcceEEEcCCCCEEEEEe
Q 026389          161 LADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCE  236 (239)
Q Consensus       161 ~pn~l~vd~dG~-iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~~l~~pnGia~s~dg~~lyvad  236 (239)
                      .+..++++++|+ +|++...                 .+++..||..+++.......-..|++++++|||+.++++.
T Consensus        74 ~~~~~~~~~~g~~l~~~~~~-----------------~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~  133 (300)
T TIGR03866        74 DPELFALHPNGKILYIANED-----------------DNLVTVIDIETRKVLAEIPVGVEPEGMAVSPDGKIVVNTS  133 (300)
T ss_pred             CccEEEECCCCCEEEEEcCC-----------------CCeEEEEECCCCeEEeEeeCCCCcceEEECCCCCEEEEEe
Confidence            256789999986 6666543                 4689999988765433333334689999999999887664

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG1214 consensus Nidogen and related basement membrane protein proteins [Cell wall/membrane/envelope biogenesis; Extracellular structures]

Probab=98.59  E-value=7.4e-07  Score=84.15  Aligned_cols=145  Identities=14%  Similarity=0.089  Sum_probs=104.7

Q ss_pred             EeccCCcCCcceEEEcC-CCCEEEE-eCCCeEEEEecCCcE--EEeeeccCcCccCeEEcC-CCCEEEEeCCCCe---EE
Q 026389           70 RLGEGILNGPEDVCVDR-NGVLYTA-TRDGWIKRLHKNGTW--ENWKLIGGDTLLGITTTQ-ENEILVCDADKGL---LK  141 (239)
Q Consensus        70 ~l~~g~~~gPe~ia~d~-~G~ly~~-~~~g~I~~~~~~G~~--~~~~~~~~~p~~Gl~~d~-~G~L~v~d~~~g~---~~  141 (239)
                      .|....+..|||||+|. ..++|.+ +...+|-.-..||+.  ..|....-.|. +|++|. .|+||++|+.+.-   -+
T Consensus      1061 ti~n~~L~SPEGiAVDh~~Rn~ywtDS~lD~IevA~LdG~~rkvLf~tdLVNPR-~iv~D~~rgnLYwtDWnRenPkIet 1139 (1289)
T KOG1214|consen 1061 TIVNSGLISPEGIAVDHIRRNMYWTDSVLDKIEVALLDGSERKVLFYTDLVNPR-AIVVDPIRGNLYWTDWNRENPKIET 1139 (1289)
T ss_pred             eeecccCCCccceeeeeccceeeeeccccchhheeecCCceeeEEEeecccCcc-eEEeecccCceeeccccccCCccee
Confidence            34444588999999997 4467754 466777666567754  33445567899 999995 4689999987532   23


Q ss_pred             EccCC--ceEEecccCCccccccccEEEcCCC-CEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecCCCC
Q 026389          142 VTEEG--VTVLASHVNGSRINLADDLIAATDG-SIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLF  218 (239)
Q Consensus       142 v~~~g--~~~l~~~~~g~~~~~pn~l~vd~dG-~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~~l~  218 (239)
                      .+-||  .++|+..    .+..|||+.+|+.- .|-|.|+.                 +.|+-...+++--.+++..+|.
T Consensus      1140 s~mDG~NrRilin~----DigLPNGLtfdpfs~~LCWvDAG-----------------t~rleC~~p~g~gRR~i~~~Lq 1198 (1289)
T KOG1214|consen 1140 SSMDGENRRILINT----DIGLPNGLTFDPFSKLLCWVDAG-----------------TKRLECTLPDGTGRRVIQNNLQ 1198 (1289)
T ss_pred             eccCCccceEEeec----ccCCCCCceeCcccceeeEEecC-----------------CcceeEecCCCCcchhhhhccc
Confidence            34566  6777653    24579999999986 56678876                 4688888887666778889999


Q ss_pred             CcceEEEcCCCCEEEEEeCC
Q 026389          219 FANGVALSKDEDYLVVCETF  238 (239)
Q Consensus       219 ~pnGia~s~dg~~lyvadt~  238 (239)
                      +|.+|.-  +++.+|++|+-
T Consensus      1199 YPF~its--y~~~fY~TDWk 1216 (1289)
T KOG1214|consen 1199 YPFSITS--YADHFYHTDWK 1216 (1289)
T ss_pred             Cceeeee--ccccceeeccc
Confidence            9998875  45569999874

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=98.58  E-value=7.6e-07  Score=73.41  Aligned_cols=149  Identities=19%  Similarity=0.224  Sum_probs=95.6

Q ss_pred             ceEEEcC-CCCE-EEEeCCCeEEEEecCC-cEEEeeeccCcCccCeEEcCCC--CEEEEeCCCCeEEEccCC----ceEE
Q 026389           80 EDVCVDR-NGVL-YTATRDGWIKRLHKNG-TWENWKLIGGDTLLGITTTQEN--EILVCDADKGLLKVTEEG----VTVL  150 (239)
Q Consensus        80 e~ia~d~-~G~l-y~~~~~g~I~~~~~~G-~~~~~~~~~~~p~~Gl~~d~~G--~L~v~d~~~g~~~v~~~g----~~~l  150 (239)
                      ||+.|+. .+.| |+....|.|+|+|... +... +...+.|..|+.+--.|  +.|++..+.....+.-+|    ..++
T Consensus        18 Egp~w~~~~~sLl~VDi~ag~v~r~D~~qn~v~r-a~ie~p~~ag~ilpv~~~~q~~~v~~G~kf~i~nwd~~~~~a~v~   96 (310)
T KOG4499|consen   18 EGPHWDVERQSLLYVDIEAGEVHRYDIEQNKVYR-AKIEGPPSAGFILPVEGGPQEFAVGCGSKFVIVNWDGVSESAKVY   96 (310)
T ss_pred             CCCceEEecceEEEEEeccCceehhhhhhhheEE-EEEecCcceeEEEEecCCCceEEEeecceEEEEEcccccceeeee
Confidence            5557875 4555 4777999999998643 3322 22223333255554333  466665554444444333    2222


Q ss_pred             ec---ccCCccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecCCCCCcceEEEcC
Q 026389          151 AS---HVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSK  227 (239)
Q Consensus       151 ~~---~~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~~l~~pnGia~s~  227 (239)
                      .+   ......-++.||-.+||+|+.|..-++. +      .+.+|.. .|.+|++-+ +++++.+...+..+||++++.
T Consensus        97 ~t~~ev~~d~kknR~NDgkvdP~Gryy~GtMad-~------~~~le~~-~g~Ly~~~~-~h~v~~i~~~v~IsNgl~Wd~  167 (310)
T KOG4499|consen   97 RTLFEVQPDRKKNRLNDGKVDPDGRYYGGTMAD-F------GDDLEPI-GGELYSWLA-GHQVELIWNCVGISNGLAWDS  167 (310)
T ss_pred             eeccccCchHHhcccccCccCCCCceeeeeecc-c------ccccccc-ccEEEEecc-CCCceeeehhccCCccccccc
Confidence            22   2223345678999999999999887662 1      1233332 467777766 489999999999999999999


Q ss_pred             CCCEEEEEeCC
Q 026389          228 DEDYLVVCETF  238 (239)
Q Consensus       228 dg~~lyvadt~  238 (239)
                      |.+.+|+.||.
T Consensus       168 d~K~fY~iDsl  178 (310)
T KOG4499|consen  168 DAKKFYYIDSL  178 (310)
T ss_pred             cCcEEEEEccC
Confidence            99999999985

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=98.53  E-value=1.4e-05  Score=67.68  Aligned_cols=137  Identities=21%  Similarity=0.295  Sum_probs=92.2

Q ss_pred             CCcceEEEcCCCCEEEEe-CCCeEEEEecCC-c-EEEeeeccCcCccCeEEcCCCCEEEEeCCCCeEEEccCC---ceEE
Q 026389           77 NGPEDVCVDRNGVLYTAT-RDGWIKRLHKNG-T-WENWKLIGGDTLLGITTTQENEILVCDADKGLLKVTEEG---VTVL  150 (239)
Q Consensus        77 ~gPe~ia~d~~G~ly~~~-~~g~I~~~~~~G-~-~~~~~~~~~~p~~Gl~~d~~G~L~v~d~~~g~~~v~~~g---~~~l  150 (239)
                      ...|||++- ++.||.-. .++..+.+|.+. + ...+ ...+... ||+.| ...||++|....+..+|+..   .+.+
T Consensus        90 ~FgEGit~~-~d~l~qLTWk~~~~f~yd~~tl~~~~~~-~y~~EGW-GLt~d-g~~Li~SDGS~~L~~~dP~~f~~~~~i  165 (264)
T PF05096_consen   90 YFGEGITIL-GDKLYQLTWKEGTGFVYDPNTLKKIGTF-PYPGEGW-GLTSD-GKRLIMSDGSSRLYFLDPETFKEVRTI  165 (264)
T ss_dssp             --EEEEEEE-TTEEEEEESSSSEEEEEETTTTEEEEEE-E-SSS---EEEEC-SSCEEEE-SSSEEEEE-TTT-SEEEEE
T ss_pred             ccceeEEEE-CCEEEEEEecCCeEEEEccccceEEEEE-ecCCcce-EEEcC-CCEEEEECCccceEEECCcccceEEEE
Confidence            467888876 45788655 888999999753 2 3333 3346778 99975 34899999988888888643   3333


Q ss_pred             ecccCCccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecC--C------------
Q 026389          151 ASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLD--S------------  216 (239)
Q Consensus       151 ~~~~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~--~------------  216 (239)
                      .-...|.+....|.+..- +|.||.---.                 ..+|.++||.+|++...++  +            
T Consensus       166 ~V~~~g~pv~~LNELE~i-~G~IyANVW~-----------------td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~  227 (264)
T PF05096_consen  166 QVTDNGRPVSNLNELEYI-NGKIYANVWQ-----------------TDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQ  227 (264)
T ss_dssp             E-EETTEE---EEEEEEE-TTEEEEEETT-----------------SSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST-
T ss_pred             EEEECCEECCCcEeEEEE-cCEEEEEeCC-----------------CCeEEEEeCCCCeEEEEEEhhHhhhccccccccc
Confidence            333577889999999997 8999987754                 4689999999999877642  1            


Q ss_pred             --CCCcceEEEcCCCCEEEEE
Q 026389          217 --LFFANGVALSKDEDYLVVC  235 (239)
Q Consensus       217 --l~~pnGia~s~dg~~lyva  235 (239)
                        ...-||||++++++.+||+
T Consensus       228 ~~~dVLNGIAyd~~~~~l~vT  248 (264)
T PF05096_consen  228 PDDDVLNGIAYDPETDRLFVT  248 (264)
T ss_dssp             -TTS-EEEEEEETTTTEEEEE
T ss_pred             ccCCeeEeEeEeCCCCEEEEE
Confidence              1235999999999999986

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=98.44  E-value=1.3e-05  Score=71.70  Aligned_cols=151  Identities=19%  Similarity=0.271  Sum_probs=87.9

Q ss_pred             ceEeccCCcCCcceEEEcCCCC-EEEEeCCCeEEEEec-CCcEEEeeeccCcCccCeEEcCCCC-EEEEeCCCCeEEE-c
Q 026389           68 VTRLGEGILNGPEDVCVDRNGV-LYTATRDGWIKRLHK-NGTWENWKLIGGDTLLGITTTQENE-ILVCDADKGLLKV-T  143 (239)
Q Consensus        68 ~~~l~~g~~~gPe~ia~d~~G~-ly~~~~~g~I~~~~~-~G~~~~~~~~~~~p~~Gl~~d~~G~-L~v~d~~~g~~~v-~  143 (239)
                      ..++..+. .-+.++++.+||+ +|+.+.+|.|..+|. +++...-...+..|. |+++.+||+ +||++...+.+.+ |
T Consensus        29 ~~~i~~~~-~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~~~-~i~~s~DG~~~~v~n~~~~~v~v~D  106 (369)
T PF02239_consen   29 VARIPTGG-APHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGNPR-GIAVSPDGKYVYVANYEPGTVSVID  106 (369)
T ss_dssp             EEEEE-ST-TEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSEEE-EEEE--TTTEEEEEEEETTEEEEEE
T ss_pred             EEEEcCCC-CceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCCcc-eEEEcCCCCEEEEEecCCCceeEec
Confidence            44555541 1245678889886 889889999999996 556554457788999 999999996 7778766666655 5


Q ss_pred             -cCC--ceEEecc-cCC-ccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCe--EEEecCC
Q 026389          144 -EEG--VTVLASH-VNG-SRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNE--TSILLDS  216 (239)
Q Consensus       144 -~~g--~~~l~~~-~~g-~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~--~~~~~~~  216 (239)
                       .+.  ++.+... ... .+-....++..++....|+....                ..++++.+|....+  .......
T Consensus       107 ~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lk----------------d~~~I~vVdy~d~~~~~~~~i~~  170 (369)
T PF02239_consen  107 AETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLK----------------DTGEIWVVDYSDPKNLKVTTIKV  170 (369)
T ss_dssp             TTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEET----------------TTTEEEEEETTTSSCEEEEEEE-
T ss_pred             cccccceeecccccccccccCCCceeEEecCCCCEEEEEEc----------------cCCeEEEEEeccccccceeeecc
Confidence             333  3333211 111 12223456666666654443321                25899999865332  2233445


Q ss_pred             CCCcceEEEcCCCCEEEEEe
Q 026389          217 LFFANGVALSKDEDYLVVCE  236 (239)
Q Consensus       217 l~~pnGia~s~dg~~lyvad  236 (239)
                      -.+|.+..++|||++++++.
T Consensus       171 g~~~~D~~~dpdgry~~va~  190 (369)
T PF02239_consen  171 GRFPHDGGFDPDGRYFLVAA  190 (369)
T ss_dssp             -TTEEEEEE-TTSSEEEEEE
T ss_pred             cccccccccCcccceeeecc
Confidence            57899999999999998863

...

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=98.40  E-value=3.2e-05  Score=67.13  Aligned_cols=132  Identities=14%  Similarity=0.254  Sum_probs=89.1

Q ss_pred             cCCcceEEEcCCCC-EEEEe-CCCeEEEEe--c-CCcEEEeeec---------cCcCccCeEEcCCCC-EEEEeCCCCeE
Q 026389           76 LNGPEDVCVDRNGV-LYTAT-RDGWIKRLH--K-NGTWENWKLI---------GGDTLLGITTTQENE-ILVCDADKGLL  140 (239)
Q Consensus        76 ~~gPe~ia~d~~G~-ly~~~-~~g~I~~~~--~-~G~~~~~~~~---------~~~p~~Gl~~d~~G~-L~v~d~~~g~~  140 (239)
                      -.||+.|+|.|+|. .|+.. -+++|..+.  + .|+.+.+...         ....- .|.+.+||+ ||+++++...+
T Consensus       190 G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~a-aIhis~dGrFLYasNRg~dsI  268 (346)
T COG2706         190 GAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAA-AIHISPDGRFLYASNRGHDSI  268 (346)
T ss_pred             CCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCcee-EEEECCCCCEEEEecCCCCeE
Confidence            47999999999986 56665 677776654  3 2554433211         11223 577889997 89999887654


Q ss_pred             ---EEccCC--ceEEec-ccCCccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEec
Q 026389          141 ---KVTEEG--VTVLAS-HVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILL  214 (239)
Q Consensus       141 ---~v~~~g--~~~l~~-~~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~  214 (239)
                         ++++++  .+.+.. ..+|   .+|.+..+++.|++.+.-..              ...+=.||+.|+.+|+++.+.
T Consensus       269 ~~f~V~~~~g~L~~~~~~~teg---~~PR~F~i~~~g~~Liaa~q--------------~sd~i~vf~~d~~TG~L~~~~  331 (346)
T COG2706         269 AVFSVDPDGGKLELVGITPTEG---QFPRDFNINPSGRFLIAANQ--------------KSDNITVFERDKETGRLTLLG  331 (346)
T ss_pred             EEEEEcCCCCEEEEEEEeccCC---cCCccceeCCCCCEEEEEcc--------------CCCcEEEEEEcCCCceEEecc
Confidence               556654  444332 2334   57999999999976554332              112357899999999999988


Q ss_pred             CCCCCcceEEE
Q 026389          215 DSLFFANGVAL  225 (239)
Q Consensus       215 ~~l~~pnGia~  225 (239)
                      ....-|..+|+
T Consensus       332 ~~~~~p~Pvcv  342 (346)
T COG2706         332 RYAVVPEPVCV  342 (346)
T ss_pred             cccCCCCcEEE
Confidence            87777777775

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=98.40  E-value=3.3e-06  Score=74.43  Aligned_cols=143  Identities=15%  Similarity=0.231  Sum_probs=81.5

Q ss_pred             cCCcceEEEcCCCCEEEEeC--------------CCeEEEEecCCcE--------------EEeeeccCcCccCeEEcCC
Q 026389           76 LNGPEDVCVDRNGVLYTATR--------------DGWIKRLHKNGTW--------------ENWKLIGGDTLLGITTTQE  127 (239)
Q Consensus        76 ~~gPe~ia~d~~G~ly~~~~--------------~g~I~~~~~~G~~--------------~~~~~~~~~p~~Gl~~d~~  127 (239)
                      ...-..|++++||.||++..              .|+|+|++++|++              +.|+.....|. |++||+.
T Consensus       113 ~H~g~~l~fgpDG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~dG~~p~dnP~~~~~~~~~~i~A~GlRN~~-~~~~d~~  191 (331)
T PF07995_consen  113 NHNGGGLAFGPDGKLYVSVGDGGNDDNAQDPNSLRGKILRIDPDGSIPADNPFVGDDGADSEIYAYGLRNPF-GLAFDPN  191 (331)
T ss_dssp             SS-EEEEEE-TTSEEEEEEB-TTTGGGGCSTTSSTTEEEEEETTSSB-TTSTTTTSTTSTTTEEEE--SEEE-EEEEETT
T ss_pred             CCCCccccCCCCCcEEEEeCCCCCcccccccccccceEEEecccCcCCCCCccccCCCceEEEEEeCCCccc-cEEEECC
Confidence            34556799999999997641              3899999988752              45666677899 9999998


Q ss_pred             -CCEEEEeCCCC----eEEEccC---C-c--e--------EEecccCC----------ccccccccEEEcC-------CC
Q 026389          128 -NEILVCDADKG----LLKVTEE---G-V--T--------VLASHVNG----------SRINLADDLIAAT-------DG  171 (239)
Q Consensus       128 -G~L~v~d~~~g----~~~v~~~---g-~--~--------~l~~~~~g----------~~~~~pn~l~vd~-------dG  171 (239)
                       |+||++|.+..    +.++.+.   | .  +        ........          .+...|.|+.+-.       +|
T Consensus       192 tg~l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~ap~G~~~y~g~~fp~~~g  271 (331)
T PF07995_consen  192 TGRLWAADNGPDGWDEINRIEPGGNYGWPYCEGGPKYSGPPIGDAPSCPGFVPPVFAYPPHSAPTGIIFYRGSAFPEYRG  271 (331)
T ss_dssp             TTEEEEEEE-SSSSEEEEEE-TT-B--TTTBSSSCSTTSS-ECTGSS-TTS---SEEETTT--EEEEEEE-SSSSGGGTT
T ss_pred             CCcEEEEccCCCCCcEEEEeccCCcCCCCCCcCCCCCCCCccccccCCCCcCccceeecCccccCceEEECCccCccccC
Confidence             99999996642    2222221   1 0  0        00000000          0112344444331       22


Q ss_pred             CEEEEeCCCCcCcccccccceeecCCceEEEEeCCCC-e---EEEecCCCC-CcceEEEcCCCCEEEEEeC
Q 026389          172 SIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLN-E---TSILLDSLF-FANGVALSKDEDYLVVCET  237 (239)
Q Consensus       172 ~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~-~---~~~~~~~l~-~pnGia~s~dg~~lyvadt  237 (239)
                      .++|++.                 ..++|+++..+.+ +   .+.+..... .|.+|+++|||+ |||++.
T Consensus       272 ~~~~~~~-----------------~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~-Lyv~~d  324 (331)
T PF07995_consen  272 DLFVADY-----------------GGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGA-LYVSDD  324 (331)
T ss_dssp             EEEEEET-----------------TTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSE-EEEEE-
T ss_pred             cEEEecC-----------------CCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCe-EEEEEC
Confidence            3333332                 3678998877633 2   334455666 789999999997 777764

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=98.39  E-value=2.2e-05  Score=72.26  Aligned_cols=140  Identities=19%  Similarity=0.293  Sum_probs=101.8

Q ss_pred             CCcCCcceEEEcCCCCEE-EEeCCCeEEEEec-CC-c-EEEeeeccCcCccCeEEcCCCCEEEEeCCCCeEEEc--cCC-
Q 026389           74 GILNGPEDVCVDRNGVLY-TATRDGWIKRLHK-NG-T-WENWKLIGGDTLLGITTTQENEILVCDADKGLLKVT--EEG-  146 (239)
Q Consensus        74 g~~~gPe~ia~d~~G~ly-~~~~~g~I~~~~~-~G-~-~~~~~~~~~~p~~Gl~~d~~G~L~v~d~~~g~~~v~--~~g-  146 (239)
                      +--.+-.+++|.++|... .++.|++|..|+. +. . .+++.......+ .++|.++|+++++-...+.+++.  ..| 
T Consensus       201 ~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~-~~~f~p~g~~i~Sgs~D~tvriWd~~~~~  279 (456)
T KOG0266|consen  201 GHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVT-SVAFSPDGNLLVSGSDDGTVRIWDVRTGE  279 (456)
T ss_pred             ccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEecCCCCceE-EEEecCCCCEEEEecCCCcEEEEeccCCe
Confidence            334566789999999755 4458888888886 33 3 344444444556 89999999999998889999987  455 


Q ss_pred             -ceEEecccCCccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeE--EEecCCCCCc---
Q 026389          147 -VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNET--SILLDSLFFA---  220 (239)
Q Consensus       147 -~~~l~~~~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~--~~~~~~l~~p---  220 (239)
                       .+.+...-+     ..+++++.+||+++++.+.                 .|.+..||..+++.  .....+...+   
T Consensus       280 ~~~~l~~hs~-----~is~~~f~~d~~~l~s~s~-----------------d~~i~vwd~~~~~~~~~~~~~~~~~~~~~  337 (456)
T KOG0266|consen  280 CVRKLKGHSD-----GISGLAFSPDGNLLVSASY-----------------DGTIRVWDLETGSKLCLKLLSGAENSAPV  337 (456)
T ss_pred             EEEeeeccCC-----ceEEEEECCCCCEEEEcCC-----------------CccEEEEECCCCceeeeecccCCCCCCce
Confidence             555544332     3688999999998888754                 58899999998883  3344444555   


Q ss_pred             ceEEEcCCCCEEEEEe
Q 026389          221 NGVALSKDEDYLVVCE  236 (239)
Q Consensus       221 nGia~s~dg~~lyvad  236 (239)
                      .-++|+|+++++++.-
T Consensus       338 ~~~~fsp~~~~ll~~~  353 (456)
T KOG0266|consen  338 TSVQFSPNGKYLLSAS  353 (456)
T ss_pred             eEEEECCCCcEEEEec
Confidence            8899999999988753

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=98.36  E-value=5.8e-05  Score=65.56  Aligned_cols=142  Identities=13%  Similarity=0.234  Sum_probs=95.1

Q ss_pred             cCCcceEEEcCCC-CEEEEeC---CCeE--EEEecC-CcEEEeee---ccCcCccCeEEcCCCC-EEEEeCCCCeEEEc-
Q 026389           76 LNGPEDVCVDRNG-VLYTATR---DGWI--KRLHKN-GTWENWKL---IGGDTLLGITTTQENE-ILVCDADKGLLKVT-  143 (239)
Q Consensus        76 ~~gPe~ia~d~~G-~ly~~~~---~g~I--~~~~~~-G~~~~~~~---~~~~p~~Gl~~d~~G~-L~v~d~~~g~~~v~-  143 (239)
                      +..|.-+++++++ .||+...   .|.|  ++||++ |+.+....   .+..|. =+++|++|+ ||+++...|.+.+. 
T Consensus        39 ~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~-yvsvd~~g~~vf~AnY~~g~v~v~p  117 (346)
T COG2706          39 LGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPC-YVSVDEDGRFVFVANYHSGSVSVYP  117 (346)
T ss_pred             cCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCe-EEEECCCCCEEEEEEccCceEEEEE
Confidence            5789999999977 7998763   5666  456653 77654322   233446 799999996 67777777888776 


Q ss_pred             --cCC-ceE----EecccCC----ccccccccEEEcCCCC-EEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEE
Q 026389          144 --EEG-VTV----LASHVNG----SRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETS  211 (239)
Q Consensus       144 --~~g-~~~----l~~~~~g----~~~~~pn~l~vd~dG~-iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~  211 (239)
                        .+| ...    +.....|    +.-.++.-..++|+|+ +++.|-.                 ..|++.|+.+.|.++
T Consensus       118 ~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG-----------------~Dri~~y~~~dg~L~  180 (346)
T COG2706         118 LQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLG-----------------TDRIFLYDLDDGKLT  180 (346)
T ss_pred             cccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecC-----------------CceEEEEEcccCccc
Confidence              367 322    2222111    1122366788999994 5666754                 468888887766654


Q ss_pred             Ee----cCCCCCcceEEEcCCCCEEEEE
Q 026389          212 IL----LDSLFFANGVALSKDEDYLVVC  235 (239)
Q Consensus       212 ~~----~~~l~~pnGia~s~dg~~lyva  235 (239)
                      ..    +.....|.-|+|.|+|++.|+.
T Consensus       181 ~~~~~~v~~G~GPRHi~FHpn~k~aY~v  208 (346)
T COG2706         181 PADPAEVKPGAGPRHIVFHPNGKYAYLV  208 (346)
T ss_pred             cccccccCCCCCcceEEEcCCCcEEEEE
Confidence            33    2345679999999999999875

>PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function

Probab=98.29  E-value=9e-06  Score=75.75  Aligned_cols=79  Identities=19%  Similarity=0.199  Sum_probs=51.5

Q ss_pred             CccccccccEEEcCCCCEEEEeCCCCcCcc--c-----ccccceeecCCceEEEEeCCCCeEEEecCC--CCCcceEEEc
Q 026389          156 GSRINLADDLIAATDGSIYFSVASTKFGLH--N-----WGLDLLEAKPHGKLLKYDPSLNETSILLDS--LFFANGVALS  226 (239)
Q Consensus       156 g~~~~~pn~l~vd~dG~iy~td~~~~~~~~--~-----~~~~~~e~~~~g~v~~~d~~~~~~~~~~~~--l~~pnGia~s  226 (239)
                      ...|..|++|+++++|+||+..-.......  .     ....+....++- +..+++.+++++.++.+  -....|++|+
T Consensus       432 ~~~f~sPDNL~~d~~G~LwI~eD~~~~~~~l~g~t~~G~~~~~~~~~G~~-~~~~~~~~g~~~rf~~~P~gaE~tG~~fs  510 (524)
T PF05787_consen  432 DNGFASPDNLAFDPDGNLWIQEDGGGSNNNLPGVTPDGEVYDFARNDGNN-VWAYDPDTGELKRFLVGPNGAEITGPCFS  510 (524)
T ss_pred             CCCcCCCCceEECCCCCEEEEeCCCCCCcccccccccCceeeeeecccce-eeeccccccceeeeccCCCCcccccceEC
Confidence            446889999999999999987544221110  0     001111111112 56678888888887754  3457899999


Q ss_pred             CCCCEEEEE
Q 026389          227 KDEDYLVVC  235 (239)
Q Consensus       227 ~dg~~lyva  235 (239)
                      ||+++|||+
T Consensus       511 pDg~tlFvn  519 (524)
T PF05787_consen  511 PDGRTLFVN  519 (524)
T ss_pred             CCCCEEEEE
Confidence            999999986

>COG3211 PhoX Predicted phosphatase [General function prediction only]

Probab=98.25  E-value=9.7e-06  Score=74.37  Aligned_cols=72  Identities=22%  Similarity=0.210  Sum_probs=47.6

Q ss_pred             ccccccccEEEcCCCCEEEE-eCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecCCC--CCcceEEEcCCCCEEE
Q 026389          157 SRINLADDLIAATDGSIYFS-VASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSL--FFANGVALSKDEDYLV  233 (239)
Q Consensus       157 ~~~~~pn~l~vd~dG~iy~t-d~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~~l--~~pnGia~s~dg~~ly  233 (239)
                      .-|+.|++|++|+.|+||+. |.+.. ...++.      .+-..+..=|++++++.....+-  +.-.|.+|+||++++|
T Consensus       497 ~~f~~PDnl~fD~~GrLWi~TDg~~s-~~~~~~------~G~~~m~~~~p~~g~~~rf~t~P~g~E~tG~~FspD~~TlF  569 (616)
T COG3211         497 NWFNSPDNLAFDPWGRLWIQTDGSGS-TLRNRF------RGVTQMLTPDPKTGTIKRFLTGPIGCEFTGPCFSPDGKTLF  569 (616)
T ss_pred             ccccCCCceEECCCCCEEEEecCCCC-ccCccc------ccccccccCCCccceeeeeccCCCcceeecceeCCCCceEE
Confidence            34778999999999999985 54421 111111      01124444566677777666542  4668999999999999


Q ss_pred             EE
Q 026389          234 VC  235 (239)
Q Consensus       234 va  235 (239)
                      |+
T Consensus       570 V~  571 (616)
T COG3211         570 VN  571 (616)
T ss_pred             EE
Confidence            86

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=98.23  E-value=0.00018  Score=65.82  Aligned_cols=59  Identities=14%  Similarity=0.266  Sum_probs=47.5

Q ss_pred             CcceEEEcCCCCEEEEe--C-------------------------------CCeEEEEecCCcE------------EEee
Q 026389           78 GPEDVCVDRNGVLYTAT--R-------------------------------DGWIKRLHKNGTW------------ENWK  112 (239)
Q Consensus        78 gPe~ia~d~~G~ly~~~--~-------------------------------~g~I~~~~~~G~~------------~~~~  112 (239)
                      .-..|+|++||.||++.  .                               .|+|+|+++||++            +.|+
T Consensus       147 ~GgrI~FgPDG~LYVs~GD~g~~~~~n~~~~~~aQ~~~~~~~~~~~d~~~~~GkILRin~DGsiP~dNPf~~g~~~eIyA  226 (454)
T TIGR03606       147 NGGRLVFGPDGKIYYTIGEQGRNQGANFFLPNQAQHTPTQQELNGKDYHAYMGKVLRLNLDGSIPKDNPSINGVVSHIFT  226 (454)
T ss_pred             CCceEEECCCCcEEEEECCCCCCCcccccCcchhccccccccccccCcccCceEEEEEcCCCCCCCCCCccCCCcceEEE
Confidence            34569999999999754  2                               2479999998863            5677


Q ss_pred             eccCcCccCeEEcCCCCEEEEeCCC
Q 026389          113 LIGGDTLLGITTTQENEILVCDADK  137 (239)
Q Consensus       113 ~~~~~p~~Gl~~d~~G~L~v~d~~~  137 (239)
                      .....|. |+++|++|+||+++.+.
T Consensus       227 ~G~RNp~-Gla~dp~G~Lw~~e~Gp  250 (454)
T TIGR03606       227 YGHRNPQ-GLAFTPDGTLYASEQGP  250 (454)
T ss_pred             Eeccccc-eeEECCCCCEEEEecCC
Confidence            7778899 99999999999999764

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=98.20  E-value=7.7e-05  Score=63.08  Aligned_cols=151  Identities=19%  Similarity=0.186  Sum_probs=79.7

Q ss_pred             eEeccCCcCCcceEEEcCCCCEEEEe-CCCeEEEEec--CCc---E---EEeee----cc-CcCccCeEEcCC-CCEEEE
Q 026389           69 TRLGEGILNGPEDVCVDRNGVLYTAT-RDGWIKRLHK--NGT---W---ENWKL----IG-GDTLLGITTTQE-NEILVC  133 (239)
Q Consensus        69 ~~l~~g~~~gPe~ia~d~~G~ly~~~-~~g~I~~~~~--~G~---~---~~~~~----~~-~~p~~Gl~~d~~-G~L~v~  133 (239)
                      +++.......+|+|++-.+|.+.+.+ .+++++.++.  +++   .   +.+.-    .. ..-- |+++|+. ++||++
T Consensus        57 r~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~E-Gla~D~~~~~L~v~  135 (248)
T PF06977_consen   57 RRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFE-GLAYDPKTNRLFVA  135 (248)
T ss_dssp             EEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE----TT--EEEEEEEE---S---SS--E-EEEEETTTTEEEEE
T ss_pred             EEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEeccccccchhhceEEecccccCCCcceE-EEEEcCCCCEEEEE
Confidence            44544446789999998877777766 6888888775  221   1   11110    01 1235 8999976 478887


Q ss_pred             eCC--CCeEEEcc--CC--ceEEe--ccc-CCccccccccEEEcCC-CCEEEEeCCCCcCcccccccceeecCCceEEEE
Q 026389          134 DAD--KGLLKVTE--EG--VTVLA--SHV-NGSRINLADDLIAATD-GSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKY  203 (239)
Q Consensus       134 d~~--~g~~~v~~--~g--~~~l~--~~~-~g~~~~~pn~l~vd~d-G~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~  203 (239)
                      -..  .+++.+..  .+  .....  ... ....+.-+.++++++. |.+|+-...                 +.+|+.+
T Consensus       136 kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~e-----------------s~~l~~~  198 (248)
T PF06977_consen  136 KERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDE-----------------SRLLLEL  198 (248)
T ss_dssp             EESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETT-----------------TTEEEEE
T ss_pred             eCCCChhhEEEccccCccceeeccccccccccceeccccceEEcCCCCeEEEEECC-----------------CCeEEEE
Confidence            543  35666653  22  22221  111 2223456899999997 788887654                 3678888


Q ss_pred             eCCCCeEEEe--cC-------CCCCcceEEEcCCCCEEEEEeC
Q 026389          204 DPSLNETSIL--LD-------SLFFANGVALSKDEDYLVVCET  237 (239)
Q Consensus       204 d~~~~~~~~~--~~-------~l~~pnGia~s~dg~~lyvadt  237 (239)
                      |.++.-+..+  ..       .+..|-|||+++||+...|+|-
T Consensus       199 d~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvsEp  241 (248)
T PF06977_consen  199 DRQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVSEP  241 (248)
T ss_dssp             -TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEETT
T ss_pred             CCCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEcCC
Confidence            8764322222  22       3578999999999975445553

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=98.20  E-value=0.00011  Score=65.10  Aligned_cols=129  Identities=10%  Similarity=-0.030  Sum_probs=82.4

Q ss_pred             CCEEEEeCC-----CeEEEEec-CCcEEEeeeccCcCccCeEEcCCC-CEEEEeC---------CCCeEEEc--cCC--c
Q 026389           88 GVLYTATRD-----GWIKRLHK-NGTWENWKLIGGDTLLGITTTQEN-EILVCDA---------DKGLLKVT--EEG--V  147 (239)
Q Consensus        88 G~ly~~~~~-----g~I~~~~~-~G~~~~~~~~~~~p~~Gl~~d~~G-~L~v~d~---------~~g~~~v~--~~g--~  147 (239)
                      .++|+.+..     ++|..+|. ++++......+.+|. |+ +.+|| .||||..         ..+.+.+.  .++  .
T Consensus        13 ~~v~V~d~~~~~~~~~v~ViD~~~~~v~g~i~~G~~P~-~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~   90 (352)
T TIGR02658        13 RRVYVLDPGHFAATTQVYTIDGEAGRVLGMTDGGFLPN-PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPI   90 (352)
T ss_pred             CEEEEECCcccccCceEEEEECCCCEEEEEEEccCCCc-ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEE
Confidence            468877743     89999996 455555567788999 97 99998 5999998         55666654  233  2


Q ss_pred             eEEeccc--CCccccccccEEEcCCC-CEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecCCCC----Cc
Q 026389          148 TVLASHV--NGSRINLADDLIAATDG-SIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLF----FA  220 (239)
Q Consensus       148 ~~l~~~~--~g~~~~~pn~l~vd~dG-~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~~l~----~p  220 (239)
                      ..+....  +-.-...++.+++++|| .+|+++.+                +...|-++|..++++..-++.-.    +|
T Consensus        91 ~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~----------------p~~~V~VvD~~~~kvv~ei~vp~~~~vy~  154 (352)
T TIGR02658        91 ADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFS----------------PSPAVGVVDLEGKAFVRMMDVPDCYHIFP  154 (352)
T ss_pred             eEEccCCCchhhccCccceEEECCCCCEEEEecCC----------------CCCEEEEEECCCCcEEEEEeCCCCcEEEE
Confidence            2221110  10124578899999999 58988855                35788899988877654332211    11


Q ss_pred             ----ceEEEcCCCCEEEE
Q 026389          221 ----NGVALSKDEDYLVV  234 (239)
Q Consensus       221 ----nGia~s~dg~~lyv  234 (239)
                          ..+.+..||+.+++
T Consensus       155 t~e~~~~~~~~Dg~~~~v  172 (352)
T TIGR02658       155 TANDTFFMHCRDGSLAKV  172 (352)
T ss_pred             ecCCccEEEeecCceEEE
Confidence                23444566666653

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>PRK04792 tolB translocation protein TolB; Provisional

Probab=98.16  E-value=0.0002  Score=65.81  Aligned_cols=135  Identities=12%  Similarity=0.084  Sum_probs=83.2

Q ss_pred             eEEEcCCCC-EE-EEeCC--CeEEEEecC-CcEEEeeeccCcCccCeEEcCCCC-EEEEeCCC---CeEEEc-cCC-ceE
Q 026389           81 DVCVDRNGV-LY-TATRD--GWIKRLHKN-GTWENWKLIGGDTLLGITTTQENE-ILVCDADK---GLLKVT-EEG-VTV  149 (239)
Q Consensus        81 ~ia~d~~G~-ly-~~~~~--g~I~~~~~~-G~~~~~~~~~~~p~~Gl~~d~~G~-L~v~d~~~---g~~~v~-~~g-~~~  149 (239)
                      ...|+|||+ |+ +...+  .+|+.++.+ |+.+.+....+... ..++.+||+ |+++....   .++.++ .++ .+.
T Consensus       222 ~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g~~~-~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~~  300 (448)
T PRK04792        222 SPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPGING-APRFSPDGKKLALVLSKDGQPEIYVVDIATKALTR  300 (448)
T ss_pred             CceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCCCcC-CeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeEE
Confidence            349999985 43 44333  469999864 45444433334445 678999996 65543222   366666 445 444


Q ss_pred             EecccCCccccccccEEEcCCC-CEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecCCCCCcceEEEcCC
Q 026389          150 LASHVNGSRINLADDLIAATDG-SIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKD  228 (239)
Q Consensus       150 l~~~~~g~~~~~pn~l~vd~dG-~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~~l~~pnGia~s~d  228 (239)
                      +... .    ......++++|| .|+|+....               +...||++|.++++.+.+........+.+++||
T Consensus       301 lt~~-~----~~~~~p~wSpDG~~I~f~s~~~---------------g~~~Iy~~dl~~g~~~~Lt~~g~~~~~~~~SpD  360 (448)
T PRK04792        301 ITRH-R----AIDTEPSWHPDGKSLIFTSERG---------------GKPQIYRVNLASGKVSRLTFEGEQNLGGSITPD  360 (448)
T ss_pred             CccC-C----CCccceEECCCCCEEEEEECCC---------------CCceEEEEECCCCCEEEEecCCCCCcCeeECCC
Confidence            4321 1    123457889999 477764321               235799999988887766433333456799999


Q ss_pred             CCEEEEEe
Q 026389          229 EDYLVVCE  236 (239)
Q Consensus       229 g~~lyvad  236 (239)
                      |++|+++.
T Consensus       361 G~~l~~~~  368 (448)
T PRK04792        361 GRSMIMVN  368 (448)
T ss_pred             CCEEEEEE
Confidence            99998764

>PRK05137 tolB translocation protein TolB; Provisional

Probab=98.10  E-value=0.00032  Score=64.03  Aligned_cols=135  Identities=12%  Similarity=0.071  Sum_probs=84.6

Q ss_pred             eEEEcCCCC-EE-EEe--CCCeEEEEecC-CcEEEeeeccCcCccCeEEcCCCC-EEEEeCC---CCeEEEc-cCC-ceE
Q 026389           81 DVCVDRNGV-LY-TAT--RDGWIKRLHKN-GTWENWKLIGGDTLLGITTTQENE-ILVCDAD---KGLLKVT-EEG-VTV  149 (239)
Q Consensus        81 ~ia~d~~G~-ly-~~~--~~g~I~~~~~~-G~~~~~~~~~~~p~~Gl~~d~~G~-L~v~d~~---~g~~~v~-~~g-~~~  149 (239)
                      ..+|.+||+ |+ ++.  .+..|+.++.+ |+.+.+....+... ..++.+||+ |+++...   ..++.++ ..+ .+.
T Consensus       206 ~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~g~~~-~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~  284 (435)
T PRK05137        206 TPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGNFPGMTF-APRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTTR  284 (435)
T ss_pred             eeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecCCCccc-CcEECCCCCEEEEEEecCCCceEEEEECCCCceEE
Confidence            358999885 43 443  34689999864 55554444444555 788999995 5444322   3466667 445 444


Q ss_pred             EecccCCccccccccEEEcCCC-CEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecCCCCCcceEEEcCC
Q 026389          150 LASHVNGSRINLADDLIAATDG-SIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKD  228 (239)
Q Consensus       150 l~~~~~g~~~~~pn~l~vd~dG-~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~~l~~pnGia~s~d  228 (239)
                      +... .+    ......++||| .|+|+....               +..+||++|.++++.+.+..+-..-+..+++||
T Consensus       285 Lt~~-~~----~~~~~~~spDG~~i~f~s~~~---------------g~~~Iy~~d~~g~~~~~lt~~~~~~~~~~~Spd  344 (435)
T PRK05137        285 LTDS-PA----IDTSPSYSPDGSQIVFESDRS---------------GSPQLYVMNADGSNPRRISFGGGRYSTPVWSPR  344 (435)
T ss_pred             ccCC-CC----ccCceeEcCCCCEEEEEECCC---------------CCCeEEEEECCCCCeEEeecCCCcccCeEECCC
Confidence            4321 11    13457889999 476664321               235799999988887776543333456889999


Q ss_pred             CCEEEEEe
Q 026389          229 EDYLVVCE  236 (239)
Q Consensus       229 g~~lyvad  236 (239)
                      |+.|++..
T Consensus       345 G~~ia~~~  352 (435)
T PRK05137        345 GDLIAFTK  352 (435)
T ss_pred             CCEEEEEE
Confidence            99987653

>PRK04922 tolB translocation protein TolB; Provisional

Probab=98.10  E-value=0.00022  Score=65.03  Aligned_cols=135  Identities=16%  Similarity=0.148  Sum_probs=82.3

Q ss_pred             eEEEcCCCC-EEEEe---CCCeEEEEecC-CcEEEeeeccCcCccCeEEcCCCC-EEEE-eCC--CCeEEEc-cCC-ceE
Q 026389           81 DVCVDRNGV-LYTAT---RDGWIKRLHKN-GTWENWKLIGGDTLLGITTTQENE-ILVC-DAD--KGLLKVT-EEG-VTV  149 (239)
Q Consensus        81 ~ia~d~~G~-ly~~~---~~g~I~~~~~~-G~~~~~~~~~~~p~~Gl~~d~~G~-L~v~-d~~--~g~~~v~-~~g-~~~  149 (239)
                      +.+|++||+ |++.+   ....|++++.+ |+.+.+....+... ..++.+||+ |+++ +..  ..++.++ ..| .+.
T Consensus       208 ~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~g~~~-~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~~  286 (433)
T PRK04922        208 SPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASFRGING-APSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLTR  286 (433)
T ss_pred             cccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccCCCCcc-CceECCCCCEEEEEEeCCCCceEEEEECCCCCeEE
Confidence            348889885 55444   33579999864 45544443334445 678999995 5444 322  2366666 455 444


Q ss_pred             EecccCCccccccccEEEcCCCC-EEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecCCCCCcceEEEcCC
Q 026389          150 LASHVNGSRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKD  228 (239)
Q Consensus       150 l~~~~~g~~~~~pn~l~vd~dG~-iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~~l~~pnGia~s~d  228 (239)
                      +... .+    .....++++||+ |+|+....               +...||.+|.++++.+.+...-.....++++||
T Consensus       287 lt~~-~~----~~~~~~~spDG~~l~f~sd~~---------------g~~~iy~~dl~~g~~~~lt~~g~~~~~~~~SpD  346 (433)
T PRK04922        287 LTNH-FG----IDTEPTWAPDGKSIYFTSDRG---------------GRPQIYRVAASGGSAERLTFQGNYNARASVSPD  346 (433)
T ss_pred             CccC-CC----CccceEECCCCCEEEEEECCC---------------CCceEEEEECCCCCeEEeecCCCCccCEEECCC
Confidence            4321 11    124678999995 66664220               124799999887777665433334456899999


Q ss_pred             CCEEEEEe
Q 026389          229 EDYLVVCE  236 (239)
Q Consensus       229 g~~lyvad  236 (239)
                      |++++++.
T Consensus       347 G~~Ia~~~  354 (433)
T PRK04922        347 GKKIAMVH  354 (433)
T ss_pred             CCEEEEEE
Confidence            99988753

>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12

Probab=98.09  E-value=5.5e-05  Score=65.43  Aligned_cols=99  Identities=18%  Similarity=0.247  Sum_probs=61.5

Q ss_pred             CeEEcCCCCEEEEeCCC-------------CeEEEc-cCC--ceEE-ecccCCccccccccEEEcCC------CCEEEEe
Q 026389          121 GITTTQENEILVCDADK-------------GLLKVT-EEG--VTVL-ASHVNGSRINLADDLIAATD------GSIYFSV  177 (239)
Q Consensus       121 Gl~~d~~G~L~v~d~~~-------------g~~~v~-~~g--~~~l-~~~~~g~~~~~pn~l~vd~d------G~iy~td  177 (239)
                      ++.+|+.|+|||.|.+.             .++.+| .++  ++.+ .....-.+-.+.|+++||..      +.+|+||
T Consensus         5 ~v~iD~~~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD   84 (287)
T PF03022_consen    5 RVQIDECGRLWVLDSGRPNGLQPPKQVCPPKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITD   84 (287)
T ss_dssp             EEEE-TTSEEEEEE-CCHSSSSTTGHTS--EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEE
T ss_pred             EEEEcCCCCEEEEeCCCcCCCCCCCCCCCcEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeC
Confidence            78888889999998763             356677 444  2222 22111113468999999982      5799999


Q ss_pred             CCCCcCcccccccceeecCCceEEEEeCCCCeEEEecCCCC--------------------CcceEEEcC---CCCEEEE
Q 026389          178 ASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLF--------------------FANGVALSK---DEDYLVV  234 (239)
Q Consensus       178 ~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~~l~--------------------~pnGia~s~---dg~~lyv  234 (239)
                      ++                 .+.|.+||..+++...+..+..                    ...|+++++   ||++||+
T Consensus        85 ~~-----------------~~glIV~dl~~~~s~Rv~~~~~~~~p~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf  147 (287)
T PF03022_consen   85 SG-----------------GPGLIVYDLATGKSWRVLHNSFSPDPDAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYF  147 (287)
T ss_dssp             TT-----------------TCEEEEEETTTTEEEEEETCGCTTS-SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEE
T ss_pred             CC-----------------cCcEEEEEccCCcEEEEecCCcceeccccceeccCceEecCCCccccccCCCCCCccEEEE
Confidence            87                 3467777777766655543311                    246789876   8899998


Q ss_pred             Ee
Q 026389          235 CE  236 (239)
Q Consensus       235 ad  236 (239)
                      .-
T Consensus       148 ~~  149 (287)
T PF03022_consen  148 HP  149 (287)
T ss_dssp             EE
T ss_pred             Ee
Confidence            64

5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=98.05  E-value=0.00019  Score=67.69  Aligned_cols=138  Identities=13%  Similarity=0.171  Sum_probs=102.6

Q ss_pred             cCCcceEEEcCCCCEE-EEeCCCeEEEEecCCc--EEEeeeccCcCccCeEEcCCCCEEEEeCCCCeEEEc--cCC--ce
Q 026389           76 LNGPEDVCVDRNGVLY-TATRDGWIKRLHKNGT--WENWKLIGGDTLLGITTTQENEILVCDADKGLLKVT--EEG--VT  148 (239)
Q Consensus        76 ~~gPe~ia~d~~G~ly-~~~~~g~I~~~~~~G~--~~~~~~~~~~p~~Gl~~d~~G~L~v~d~~~g~~~v~--~~g--~~  148 (239)
                      ...-.++++.|||.+. +|..||+|..|+..-.  ..+|.+....-. |+.|...|+.+++.+-.|.++..  ...  .+
T Consensus       350 ~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt-~v~f~~~g~~llssSLDGtVRAwDlkRYrNfR  428 (893)
T KOG0291|consen  350 SDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVT-AVQFTARGNVLLSSSLDGTVRAWDLKRYRNFR  428 (893)
T ss_pred             ccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceE-EEEEEecCCEEEEeecCCeEEeeeecccceee
Confidence            4455678999999776 6669999999986432  456665555555 89999999999999888988875  233  44


Q ss_pred             EEecccCCccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecCCCCCc-ceEEEcC
Q 026389          149 VLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFA-NGVALSK  227 (239)
Q Consensus       149 ~l~~~~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~~l~~p-nGia~s~  227 (239)
                      .+...   .| ...+-+++|+.|.|.++.....|                .|+.|+.++|++-.++.|-..| .|++|++
T Consensus       429 Tft~P---~p-~QfscvavD~sGelV~AG~~d~F----------------~IfvWS~qTGqllDiLsGHEgPVs~l~f~~  488 (893)
T KOG0291|consen  429 TFTSP---EP-IQFSCVAVDPSGELVCAGAQDSF----------------EIFVWSVQTGQLLDILSGHEGPVSGLSFSP  488 (893)
T ss_pred             eecCC---Cc-eeeeEEEEcCCCCEEEeeccceE----------------EEEEEEeecCeeeehhcCCCCcceeeEEcc
Confidence            44322   12 34578999999999888765333                6899999999988777776666 7899999


Q ss_pred             CCCEEEE
Q 026389          228 DEDYLVV  234 (239)
Q Consensus       228 dg~~lyv  234 (239)
                      +|+.|+-
T Consensus       489 ~~~~LaS  495 (893)
T KOG0291|consen  489 DGSLLAS  495 (893)
T ss_pred             ccCeEEe
Confidence            9996653

>PRK03629 tolB translocation protein TolB; Provisional

Probab=98.00  E-value=0.00065  Score=61.99  Aligned_cols=135  Identities=7%  Similarity=0.032  Sum_probs=83.5

Q ss_pred             eEEEcCCCC-EE-EEe--CCCeEEEEecC-CcEEEeeeccCcCccCeEEcCCCC-EEEEeCCC---CeEEEc-cCC-ceE
Q 026389           81 DVCVDRNGV-LY-TAT--RDGWIKRLHKN-GTWENWKLIGGDTLLGITTTQENE-ILVCDADK---GLLKVT-EEG-VTV  149 (239)
Q Consensus        81 ~ia~d~~G~-ly-~~~--~~g~I~~~~~~-G~~~~~~~~~~~p~~Gl~~d~~G~-L~v~d~~~---g~~~v~-~~g-~~~  149 (239)
                      +.+|+|||+ |. +..  .+..|+.++.+ |+.+.+....+... ..++.+||+ |+++....   .++.++ ..| .+.
T Consensus       203 ~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~~~-~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~  281 (429)
T PRK03629        203 SPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNG-APAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQ  281 (429)
T ss_pred             eeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCCcC-CeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEE
Confidence            459999985 33 333  34578888754 55444433334445 688999995 55543322   355666 455 554


Q ss_pred             EecccCCccccccccEEEcCCCC-EEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecCCCCCcceEEEcCC
Q 026389          150 LASHVNGSRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKD  228 (239)
Q Consensus       150 l~~~~~g~~~~~pn~l~vd~dG~-iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~~l~~pnGia~s~d  228 (239)
                      +....     .......+.|||+ |+|+....               +.-+||++|.++++.+.+..........+++||
T Consensus       282 lt~~~-----~~~~~~~wSPDG~~I~f~s~~~---------------g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~SpD  341 (429)
T PRK03629        282 VTDGR-----SNNTEPTWFPDSQNLAYTSDQA---------------GRPQVYKVNINGGAPQRITWEGSQNQDADVSSD  341 (429)
T ss_pred             ccCCC-----CCcCceEECCCCCEEEEEeCCC---------------CCceEEEEECCCCCeEEeecCCCCccCEEECCC
Confidence            43221     1245788999995 65654321               124799999988877766544444557889999


Q ss_pred             CCEEEEEe
Q 026389          229 EDYLVVCE  236 (239)
Q Consensus       229 g~~lyvad  236 (239)
                      |++++++.
T Consensus       342 G~~Ia~~~  349 (429)
T PRK03629        342 GKFMVMVS  349 (429)
T ss_pred             CCEEEEEE
Confidence            99887653

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=98.00  E-value=0.00076  Score=55.19  Aligned_cols=134  Identities=20%  Similarity=0.236  Sum_probs=87.9

Q ss_pred             ceEEEcCCC-CEEEEeCCCeEEEEecCC--cEEEeeeccCcCccCeEEcCCCCEEEEeCCCCeEEEc--cCC--ceEEec
Q 026389           80 EDVCVDRNG-VLYTATRDGWIKRLHKNG--TWENWKLIGGDTLLGITTTQENEILVCDADKGLLKVT--EEG--VTVLAS  152 (239)
Q Consensus        80 e~ia~d~~G-~ly~~~~~g~I~~~~~~G--~~~~~~~~~~~p~~Gl~~d~~G~L~v~d~~~g~~~v~--~~g--~~~l~~  152 (239)
                      ..+.+.+++ .+++++.+|.|..|+.+.  ....+........ .+.+.++++++++....+.+.+.  .++  ...+..
T Consensus        55 ~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  133 (289)
T cd00200          55 RDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVS-SVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRG  133 (289)
T ss_pred             eEEEECCCCCEEEEEcCCCeEEEEEcCcccceEEEeccCCcEE-EEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEecc
Confidence            478888887 566777899999998654  2334433334566 88998888888877655655554  334  222221


Q ss_pred             ccCCccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecC-CCCCcceEEEcCCCCE
Q 026389          153 HVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLD-SLFFANGVALSKDEDY  231 (239)
Q Consensus       153 ~~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~-~l~~pnGia~s~dg~~  231 (239)
                      .     -.....+++++++.++++...                 .|.+..||..+++...... .-.....++++++++.
T Consensus       134 ~-----~~~i~~~~~~~~~~~l~~~~~-----------------~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~  191 (289)
T cd00200         134 H-----TDWVNSVAFSPDGTFVASSSQ-----------------DGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEK  191 (289)
T ss_pred             C-----CCcEEEEEEcCcCCEEEEEcC-----------------CCcEEEEEccccccceeEecCccccceEEECCCcCE
Confidence            1     124678999998877776542                 4788889987555433332 2335788999999987


Q ss_pred             EEEEe
Q 026389          232 LVVCE  236 (239)
Q Consensus       232 lyvad  236 (239)
                      ++++.
T Consensus       192 l~~~~  196 (289)
T cd00200         192 LLSSS  196 (289)
T ss_pred             EEEec
Confidence            77664

>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12

Probab=97.97  E-value=0.00059  Score=59.04  Aligned_cols=155  Identities=16%  Similarity=0.227  Sum_probs=85.9

Q ss_pred             ceEEEcCCCCEEEEeCC-------------CeEEEEec-CCcE-EEee------eccCcCccCeEEcC-C-----CCEEE
Q 026389           80 EDVCVDRNGVLYTATRD-------------GWIKRLHK-NGTW-ENWK------LIGGDTLLGITTTQ-E-----NEILV  132 (239)
Q Consensus        80 e~ia~d~~G~ly~~~~~-------------g~I~~~~~-~G~~-~~~~------~~~~~p~~Gl~~d~-~-----G~L~v  132 (239)
                      -++.+|+.|+||+-+..             -+|+.||. ++++ +++.      .....-+ .+++|. +     +.+|+
T Consensus         4 ~~v~iD~~~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t~~li~~~~~p~~~~~~~s~ln-dl~VD~~~~~~~~~~aYI   82 (287)
T PF03022_consen    4 QRVQIDECGRLWVLDSGRPNGLQPPKQVCPPKLVAFDLKTNQLIRRYPFPPDIAPPDSFLN-DLVVDVRDGNCDDGFAYI   82 (287)
T ss_dssp             EEEEE-TTSEEEEEE-CCHSSSSTTGHTS--EEEEEETTTTCEEEEEE--CCCS-TCGGEE-EEEEECTTTTS-SEEEEE
T ss_pred             cEEEEcCCCCEEEEeCCCcCCCCCCCCCCCcEEEEEECCCCcEEEEEECChHHcccccccc-eEEEEccCCCCcceEEEE
Confidence            36789999999976521             28899985 3443 3321      1233445 688884 2     46999


Q ss_pred             EeCC-CCeEEEc-cCC--ceEEecc-----------cCCccccc---cccEEEcC---CC-CEEEEeCCCC--cCccc--
Q 026389          133 CDAD-KGLLKVT-EEG--VTVLASH-----------VNGSRINL---ADDLIAAT---DG-SIYFSVASTK--FGLHN--  186 (239)
Q Consensus       133 ~d~~-~g~~~v~-~~g--~~~l~~~-----------~~g~~~~~---pn~l~vd~---dG-~iy~td~~~~--~~~~~--  186 (239)
                      +|.. .|++.+| .+|  .+++...           ..|..+..   ..|++..+   || .+||.-.++.  |.+..  
T Consensus        83 tD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss~~ly~v~T~~  162 (287)
T PF03022_consen   83 TDSGGPGLIVYDLATGKSWRVLHNSFSPDPDAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSSRKLYRVPTSV  162 (287)
T ss_dssp             EETTTCEEEEEETTTTEEEEEETCGCTTS-SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-SEEEEEEHHH
T ss_pred             eCCCcCcEEEEEccCCcEEEEecCCcceeccccceeccCceEecCCCccccccCCCCCCccEEEEEeCCCCcEEEEEHHH
Confidence            9987 5777777 566  4444221           12333333   44566655   55 6888765542  21110  


Q ss_pred             ---------c-c-----------------------ccceeecCCceEEEEeCCC----CeEEEecC---CCCCcceEEEc
Q 026389          187 ---------W-G-----------------------LDLLEAKPHGKLLKYDPSL----NETSILLD---SLFFANGVALS  226 (239)
Q Consensus       187 ---------~-~-----------------------~~~~e~~~~g~v~~~d~~~----~~~~~~~~---~l~~pnGia~s  226 (239)
                               . .                       .-++..-..+.|+++++++    .+.+.++.   .+.+|+++.++
T Consensus       163 L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~  242 (287)
T PF03022_consen  163 LRDPSLSDAQALASQVQDLGDKGSQSDGMAIDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKID  242 (287)
T ss_dssp             HCSTT--HHH-HHHT-EEEEE---SECEEEEETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-
T ss_pred             hhCccccccccccccceeccccCCCCceEEECCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeec
Confidence                     0 0                       0011122456888899875    35555542   37899999999


Q ss_pred             C--CCCEEEEEe
Q 026389          227 K--DEDYLVVCE  236 (239)
Q Consensus       227 ~--dg~~lyvad  236 (239)
                      +  +|. ||+..
T Consensus       243 ~~~~g~-L~v~s  253 (287)
T PF03022_consen  243 PEGDGY-LWVLS  253 (287)
T ss_dssp             T--TS--EEEEE
T ss_pred             cccCce-EEEEE
Confidence            9  776 66643

5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.

>PRK00178 tolB translocation protein TolB; Provisional

Probab=97.94  E-value=0.00099  Score=60.55  Aligned_cols=136  Identities=13%  Similarity=0.132  Sum_probs=82.9

Q ss_pred             ceEEEcCCCC-E-EEEeC--CCeEEEEecC-CcEEEeeeccCcCccCeEEcCCCC-EEEEeCCC---CeEEEc-cCC-ce
Q 026389           80 EDVCVDRNGV-L-YTATR--DGWIKRLHKN-GTWENWKLIGGDTLLGITTTQENE-ILVCDADK---GLLKVT-EEG-VT  148 (239)
Q Consensus        80 e~ia~d~~G~-l-y~~~~--~g~I~~~~~~-G~~~~~~~~~~~p~~Gl~~d~~G~-L~v~d~~~---g~~~v~-~~g-~~  148 (239)
                      ....|+|||+ | |++..  ..+|+.++.+ |+.+.+....+... ..++.+||+ |+++....   .++.++ .++ .+
T Consensus       202 ~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g~~~-~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~  280 (430)
T PRK00178        202 LSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFEGLNG-APAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLS  280 (430)
T ss_pred             eeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCCCCcC-CeEECCCCCEEEEEEccCCCceEEEEECCCCCeE
Confidence            3458999885 4 34433  3479998864 55554444344445 678999995 54433222   456666 445 44


Q ss_pred             EEecccCCccccccccEEEcCCC-CEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecCCCCCcceEEEcC
Q 026389          149 VLASHVNGSRINLADDLIAATDG-SIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSK  227 (239)
Q Consensus       149 ~l~~~~~g~~~~~pn~l~vd~dG-~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~~l~~pnGia~s~  227 (239)
                      .+... .+    ......+++|| .|||+...               .+..+||++|.++++.+.+..........+++|
T Consensus       281 ~lt~~-~~----~~~~~~~spDg~~i~f~s~~---------------~g~~~iy~~d~~~g~~~~lt~~~~~~~~~~~Sp  340 (430)
T PRK00178        281 RVTNH-PA----IDTEPFWGKDGRTLYFTSDR---------------GGKPQIYKVNVNGGRAERVTFVGNYNARPRLSA  340 (430)
T ss_pred             EcccC-CC----CcCCeEECCCCCEEEEEECC---------------CCCceEEEEECCCCCEEEeecCCCCccceEECC
Confidence            44321 11    12356789998 57776432               123579999988888766653333334578999


Q ss_pred             CCCEEEEEe
Q 026389          228 DEDYLVVCE  236 (239)
Q Consensus       228 dg~~lyvad  236 (239)
                      ||++|+++.
T Consensus       341 dg~~i~~~~  349 (430)
T PRK00178        341 DGKTLVMVH  349 (430)
T ss_pred             CCCEEEEEE
Confidence            999987764

>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4

Probab=97.94  E-value=6e-05  Score=53.49  Aligned_cols=60  Identities=17%  Similarity=0.197  Sum_probs=44.4

Q ss_pred             ceEEEcCC-CCEEEEeC------------------CCeEEEEecC-CcEEEeeeccCcCccCeEEcCCCC-EEEEeCCCC
Q 026389           80 EDVCVDRN-GVLYTATR------------------DGWIKRLHKN-GTWENWKLIGGDTLLGITTTQENE-ILVCDADKG  138 (239)
Q Consensus        80 e~ia~d~~-G~ly~~~~------------------~g~I~~~~~~-G~~~~~~~~~~~p~~Gl~~d~~G~-L~v~d~~~g  138 (239)
                      .+++++++ |.||+++.                  +||++++|+. ++++++.+....|+ |+++.+|+. |+|+.....
T Consensus         1 ndldv~~~~g~vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp~t~~~~vl~~~L~fpN-GVals~d~~~vlv~Et~~~   79 (89)
T PF03088_consen    1 NDLDVDQDTGTVYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDPSTKETTVLLDGLYFPN-GVALSPDESFVLVAETGRY   79 (89)
T ss_dssp             -EEEE-TTT--EEEEES-SS--TTGHHHHHHHT---EEEEEEETTTTEEEEEEEEESSEE-EEEE-TTSSEEEEEEGGGT
T ss_pred             CceeEecCCCEEEEEeCccccCccceeeeeecCCCCcCEEEEECCCCeEEEehhCCCccC-eEEEcCCCCEEEEEeccCc
Confidence            36889987 99998752                  3899999985 56778888889999 999999996 899987654


Q ss_pred             eE
Q 026389          139 LL  140 (239)
Q Consensus       139 ~~  140 (239)
                      .+
T Consensus        80 Ri   81 (89)
T PF03088_consen   80 RI   81 (89)
T ss_dssp             EE
T ss_pred             eE
Confidence            33

3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=97.92  E-value=0.0015  Score=58.09  Aligned_cols=64  Identities=13%  Similarity=0.082  Sum_probs=47.8

Q ss_pred             EEEcCCC-CEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecCCCCCcceEEEcCCCC-EEEEEe
Q 026389          165 LIAATDG-SIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDED-YLVVCE  236 (239)
Q Consensus       165 l~vd~dG-~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~~l~~pnGia~s~dg~-~lyvad  236 (239)
                      ++++++| ++|+.......+.+.        .+.+.|+.+|..++++...+..-..|.+|++++||+ +||+++
T Consensus       253 ia~~~dg~~lyV~~~~~~~~thk--------~~~~~V~ViD~~t~kvi~~i~vG~~~~~iavS~Dgkp~lyvtn  318 (352)
T TIGR02658       253 VAYHRARDRIYLLADQRAKWTHK--------TASRFLFVVDAKTGKRLRKIELGHEIDSINVSQDAKPLLYALS  318 (352)
T ss_pred             EEEcCCCCEEEEEecCCcccccc--------CCCCEEEEEECCCCeEEEEEeCCCceeeEEECCCCCeEEEEeC
Confidence            9999997 899954221111111        134689999999988877666567899999999999 999886

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>PRK02889 tolB translocation protein TolB; Provisional

Probab=97.88  E-value=0.0013  Score=59.95  Aligned_cols=133  Identities=13%  Similarity=0.139  Sum_probs=79.3

Q ss_pred             EEEcCCCC-EEEEe-C--CCeEEEEecC-CcEEEeeeccCcCccCeEEcCCCC-EEEEeCCC---CeEEEcc-CC-ceEE
Q 026389           82 VCVDRNGV-LYTAT-R--DGWIKRLHKN-GTWENWKLIGGDTLLGITTTQENE-ILVCDADK---GLLKVTE-EG-VTVL  150 (239)
Q Consensus        82 ia~d~~G~-ly~~~-~--~g~I~~~~~~-G~~~~~~~~~~~p~~Gl~~d~~G~-L~v~d~~~---g~~~v~~-~g-~~~l  150 (239)
                      .+|+|||+ |++.+ .  ...|+.++.+ |+...+....+... ..++.+||+ |+++....   .++.++. .+ .+.+
T Consensus       201 p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g~~~-~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~l  279 (427)
T PRK02889        201 PAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFKGSNS-APAWSPDGRTLAVALSRDGNSQIYTVNADGSGLRRL  279 (427)
T ss_pred             ceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCCCCcc-ceEECCCCCEEEEEEccCCCceEEEEECCCCCcEEC
Confidence            48999885 44443 3  3469999864 55544443444555 788999995 55443222   3555663 34 4444


Q ss_pred             ecccCCccccccccEEEcCCCC-EEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecCCCCCcceEEEcCCC
Q 026389          151 ASHVNGSRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDE  229 (239)
Q Consensus       151 ~~~~~g~~~~~pn~l~vd~dG~-iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~~l~~pnGia~s~dg  229 (239)
                      ... .+    ......+++||+ |+|+....               +.-.||.++.++++.+.+..........+++|||
T Consensus       280 t~~-~~----~~~~~~wSpDG~~l~f~s~~~---------------g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~SpDG  339 (427)
T PRK02889        280 TQS-SG----IDTEPFFSPDGRSIYFTSDRG---------------GAPQIYRMPASGGAAQRVTFTGSYNTSPRISPDG  339 (427)
T ss_pred             CCC-CC----CCcCeEEcCCCCEEEEEecCC---------------CCcEEEEEECCCCceEEEecCCCCcCceEECCCC
Confidence            321 11    124568999994 66653220               1347899998777766554322233457899999


Q ss_pred             CEEEEE
Q 026389          230 DYLVVC  235 (239)
Q Consensus       230 ~~lyva  235 (239)
                      ++|+++
T Consensus       340 ~~Ia~~  345 (427)
T PRK02889        340 KLLAYI  345 (427)
T ss_pred             CEEEEE
Confidence            988654

>PRK05137 tolB translocation protein TolB; Provisional

Probab=97.88  E-value=0.0011  Score=60.61  Aligned_cols=133  Identities=11%  Similarity=0.074  Sum_probs=80.4

Q ss_pred             eEEEcCCCC-EE-EEeCC--CeEEEEecCC-cEEEeeeccCcCccCeEEcCCCC-EEEEeCCC---CeEEEcc-CC-ceE
Q 026389           81 DVCVDRNGV-LY-TATRD--GWIKRLHKNG-TWENWKLIGGDTLLGITTTQENE-ILVCDADK---GLLKVTE-EG-VTV  149 (239)
Q Consensus        81 ~ia~d~~G~-ly-~~~~~--g~I~~~~~~G-~~~~~~~~~~~p~~Gl~~d~~G~-L~v~d~~~---g~~~v~~-~g-~~~  149 (239)
                      ..+|+|||+ |+ +.+.+  ..|+.++.++ +.+.+....+... ...+.+||+ |+++....   .++.++. .+ .+.
T Consensus       250 ~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~Lt~~~~~~~-~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~  328 (435)
T PRK05137        250 APRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTTRLTDSPAIDT-SPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRR  328 (435)
T ss_pred             CcEECCCCCEEEEEEecCCCceEEEEECCCCceEEccCCCCccC-ceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEE
Confidence            458999985 44 44444  4699998644 4444433333444 678889996 44433222   3556664 34 444


Q ss_pred             EecccCCccccccccEEEcCCC-CEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecCCCCCcceEEEcCC
Q 026389          150 LASHVNGSRINLADDLIAATDG-SIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKD  228 (239)
Q Consensus       150 l~~~~~g~~~~~pn~l~vd~dG-~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~~l~~pnGia~s~d  228 (239)
                      +... .+    ..+...+.||| .|+++....               +..+|+.+|.+++..+.+..+ .....+.|+||
T Consensus       329 lt~~-~~----~~~~~~~SpdG~~ia~~~~~~---------------~~~~i~~~d~~~~~~~~lt~~-~~~~~p~~spD  387 (435)
T PRK05137        329 ISFG-GG----RYSTPVWSPRGDLIAFTKQGG---------------GQFSIGVMKPDGSGERILTSG-FLVEGPTWAPN  387 (435)
T ss_pred             eecC-CC----cccCeEECCCCCEEEEEEcCC---------------CceEEEEEECCCCceEeccCC-CCCCCCeECCC
Confidence            4321 11    23457899999 566665321               124789999887766555443 34677899999


Q ss_pred             CCEEEEE
Q 026389          229 EDYLVVC  235 (239)
Q Consensus       229 g~~lyva  235 (239)
                      |+.|+++
T Consensus       388 G~~i~~~  394 (435)
T PRK05137        388 GRVIMFF  394 (435)
T ss_pred             CCEEEEE
Confidence            9988765

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=97.88  E-value=0.0014  Score=59.06  Aligned_cols=134  Identities=15%  Similarity=0.112  Sum_probs=83.1

Q ss_pred             EEEcCCCC-EEEEe-C--CCeEEEEecC-CcEEEeeeccCcCccCeEEcCCCC-EEEEeCCC---CeEEEc-cCC-ceEE
Q 026389           82 VCVDRNGV-LYTAT-R--DGWIKRLHKN-GTWENWKLIGGDTLLGITTTQENE-ILVCDADK---GLLKVT-EEG-VTVL  150 (239)
Q Consensus        82 ia~d~~G~-ly~~~-~--~g~I~~~~~~-G~~~~~~~~~~~p~~Gl~~d~~G~-L~v~d~~~---g~~~v~-~~g-~~~l  150 (239)
                      .+|++||+ |++.. .  ...|+.++.. |+.+.+....+... .+++.+||+ |+++....   .++.++ .++ .+.+
T Consensus       195 p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~~~~-~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~~l  273 (417)
T TIGR02800       195 PAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASFPGMNG-APAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLTRL  273 (417)
T ss_pred             ccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCCCcc-ceEECCCCCEEEEEECCCCCccEEEEECCCCCEEEC
Confidence            47888885 43433 2  3578888864 55554444445566 788999995 66554322   356666 344 4444


Q ss_pred             ecccCCccccccccEEEcCCCC-EEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecCCCCCcceEEEcCCC
Q 026389          151 ASHVNGSRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDE  229 (239)
Q Consensus       151 ~~~~~g~~~~~pn~l~vd~dG~-iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~~l~~pnGia~s~dg  229 (239)
                      ... .+    ......+.+||+ |+|+....               +..+||++|.++++.+.+.........++++|||
T Consensus       274 ~~~-~~----~~~~~~~s~dg~~l~~~s~~~---------------g~~~iy~~d~~~~~~~~l~~~~~~~~~~~~spdg  333 (417)
T TIGR02800       274 TNG-PG----IDTEPSWSPDGKSIAFTSDRG---------------GSPQIYMMDADGGEVRRLTFRGGYNASPSWSPDG  333 (417)
T ss_pred             CCC-CC----CCCCEEECCCCCEEEEEECCC---------------CCceEEEEECCCCCEEEeecCCCCccCeEECCCC
Confidence            321 11    122457788984 66654321               1347999999888877666555556778999999


Q ss_pred             CEEEEEe
Q 026389          230 DYLVVCE  236 (239)
Q Consensus       230 ~~lyvad  236 (239)
                      ++++++.
T Consensus       334 ~~i~~~~  340 (417)
T TIGR02800       334 DLIAFVH  340 (417)
T ss_pred             CEEEEEE
Confidence            9888764

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=97.83  E-value=0.00079  Score=60.80  Aligned_cols=127  Identities=15%  Similarity=0.172  Sum_probs=85.7

Q ss_pred             EEEeCCC-eEEEEecCC-cEEEeeeccCcCccCeEEcCCCC-EEEEeCCCCeEEEc-cCC-ceEEecccCCccccccccE
Q 026389           91 YTATRDG-WIKRLHKNG-TWENWKLIGGDTLLGITTTQENE-ILVCDADKGLLKVT-EEG-VTVLASHVNGSRINLADDL  165 (239)
Q Consensus        91 y~~~~~g-~I~~~~~~G-~~~~~~~~~~~p~~Gl~~d~~G~-L~v~d~~~g~~~v~-~~g-~~~l~~~~~g~~~~~pn~l  165 (239)
                      .+++.+| .+..++.+| +.+.+....+... .+.++++|+ +.|++....++.++ ++| ++.+-....|    ...++
T Consensus       375 vigt~dgD~l~iyd~~~~e~kr~e~~lg~I~-av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~----lItdf  449 (668)
T COG4946         375 VIGTNDGDKLGIYDKDGGEVKRIEKDLGNIE-AVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYG----LITDF  449 (668)
T ss_pred             EEeccCCceEEEEecCCceEEEeeCCccceE-EEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccc----eeEEE
Confidence            3445455 666676644 5566666777777 899999997 77777777788888 788 6666433333    46789


Q ss_pred             EEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecCCCCCcceEEEcCCCCEEEEE
Q 026389          166 IAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVC  235 (239)
Q Consensus       166 ~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~~l~~pnGia~s~dg~~lyva  235 (239)
                      +++++++.+.=.....|-             ...+-.||.+++++-.+.+.-.+-..-||+|||++||.-
T Consensus       450 ~~~~nsr~iAYafP~gy~-------------tq~Iklydm~~~Kiy~vTT~ta~DfsPaFD~d~ryLYfL  506 (668)
T COG4946         450 DWHPNSRWIAYAFPEGYY-------------TQSIKLYDMDGGKIYDVTTPTAYDFSPAFDPDGRYLYFL  506 (668)
T ss_pred             EEcCCceeEEEecCccee-------------eeeEEEEecCCCeEEEecCCcccccCcccCCCCcEEEEE
Confidence            999998744322111111             235667888877776666555555667899999999874

>PRK04922 tolB translocation protein TolB; Provisional

Probab=97.82  E-value=0.0018  Score=59.06  Aligned_cols=134  Identities=16%  Similarity=0.155  Sum_probs=81.7

Q ss_pred             eEEEcCCCC-EEE-EeCCC--eEEEEecC-CcEEEeeeccCcCccCeEEcCCCC-EEEE-eCCC--CeEEEc-cCC-ceE
Q 026389           81 DVCVDRNGV-LYT-ATRDG--WIKRLHKN-GTWENWKLIGGDTLLGITTTQENE-ILVC-DADK--GLLKVT-EEG-VTV  149 (239)
Q Consensus        81 ~ia~d~~G~-ly~-~~~~g--~I~~~~~~-G~~~~~~~~~~~p~~Gl~~d~~G~-L~v~-d~~~--g~~~v~-~~g-~~~  149 (239)
                      .++|++||+ |++ .+.+|  .|+.++.+ |+.+.+....+... ..++.+||+ |+++ +...  .++.++ ..| .+.
T Consensus       252 ~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~~lt~~~~~~~-~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~  330 (433)
T PRK04922        252 APSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLTRLTNHFGIDT-EPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAER  330 (433)
T ss_pred             CceECCCCCEEEEEEeCCCCceEEEEECCCCCeEECccCCCCcc-ceEECCCCCEEEEEECCCCCceEEEEECCCCCeEE
Confidence            468999885 544 34444  69999864 45544433333345 678899996 4443 3322  356666 345 444


Q ss_pred             EecccCCccccccccEEEcCCC-CEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecCCCCCcceEEEcCC
Q 026389          150 LASHVNGSRINLADDLIAATDG-SIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKD  228 (239)
Q Consensus       150 l~~~~~g~~~~~pn~l~vd~dG-~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~~l~~pnGia~s~d  228 (239)
                      +..  .+   .+....++.+|| .|+++....               +..+|+.+|.++++.+.+..+. .-...+++||
T Consensus       331 lt~--~g---~~~~~~~~SpDG~~Ia~~~~~~---------------~~~~I~v~d~~~g~~~~Lt~~~-~~~~p~~spd  389 (433)
T PRK04922        331 LTF--QG---NYNARASVSPDGKKIAMVHGSG---------------GQYRIAVMDLSTGSVRTLTPGS-LDESPSFAPN  389 (433)
T ss_pred             eec--CC---CCccCEEECCCCCEEEEEECCC---------------CceeEEEEECCCCCeEECCCCC-CCCCceECCC
Confidence            431  22   123468999999 577765321               1237999999888877655432 3445789999


Q ss_pred             CCEEEEEe
Q 026389          229 EDYLVVCE  236 (239)
Q Consensus       229 g~~lyvad  236 (239)
                      |++++++.
T Consensus       390 G~~i~~~s  397 (433)
T PRK04922        390 GSMVLYAT  397 (433)
T ss_pred             CCEEEEEE
Confidence            99876653

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=97.80  E-value=0.0033  Score=51.36  Aligned_cols=135  Identities=19%  Similarity=0.222  Sum_probs=86.4

Q ss_pred             CcceEEEcCCCCEEEEe-CCCeEEEEecC-CcE-EEeeeccCcCccCeEEcCCCCEEEEeCCCCeEEE-c-cCC--ceEE
Q 026389           78 GPEDVCVDRNGVLYTAT-RDGWIKRLHKN-GTW-ENWKLIGGDTLLGITTTQENEILVCDADKGLLKV-T-EEG--VTVL  150 (239)
Q Consensus        78 gPe~ia~d~~G~ly~~~-~~g~I~~~~~~-G~~-~~~~~~~~~p~~Gl~~d~~G~L~v~d~~~g~~~v-~-~~g--~~~l  150 (239)
                      ...++.+.+++.++++. .+|.|..|+.. ++. ..+........ .+.++++++++++....+.+.+ + ..+  ...+
T Consensus        95 ~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~  173 (289)
T cd00200          95 YVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVN-SVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATL  173 (289)
T ss_pred             cEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEE-EEEEcCcCCEEEEEcCCCcEEEEEccccccceeE
Confidence            56778999888777666 59999999875 443 23222333456 8899988887777664555555 4 334  3333


Q ss_pred             ecccCCccccccccEEEcCCCC-EEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEec-CCCCCcceEEEcCC
Q 026389          151 ASHVNGSRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILL-DSLFFANGVALSKD  228 (239)
Q Consensus       151 ~~~~~g~~~~~pn~l~vd~dG~-iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~-~~l~~pnGia~s~d  228 (239)
                      ...     -.....+.+.++|+ ++++..                  .|.+..||..+++..... ..-.....++++++
T Consensus       174 ~~~-----~~~i~~~~~~~~~~~l~~~~~------------------~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~  230 (289)
T cd00200         174 TGH-----TGEVNSVAFSPDGEKLLSSSS------------------DGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPD  230 (289)
T ss_pred             ecC-----ccccceEEECCCcCEEEEecC------------------CCcEEEEECCCCceecchhhcCCceEEEEEcCC
Confidence            211     12467899999994 555443                  378889998765554443 33336788999998


Q ss_pred             CCEEEEEe
Q 026389          229 EDYLVVCE  236 (239)
Q Consensus       229 g~~lyvad  236 (239)
                      +..++.+.
T Consensus       231 ~~~~~~~~  238 (289)
T cd00200         231 GYLLASGS  238 (289)
T ss_pred             CcEEEEEc
Confidence            77665553

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=97.79  E-value=0.0027  Score=54.38  Aligned_cols=138  Identities=13%  Similarity=0.159  Sum_probs=86.1

Q ss_pred             CcceEEEcCCCCEE-EEeCCCeEEEEecC-CcEEEeeeccCcCccCeEEcCCCCEEEEeCCCCeEEEc-----cCC-ceE
Q 026389           78 GPEDVCVDRNGVLY-TATRDGWIKRLHKN-GTWENWKLIGGDTLLGITTTQENEILVCDADKGLLKVT-----EEG-VTV  149 (239)
Q Consensus        78 gPe~ia~d~~G~ly-~~~~~g~I~~~~~~-G~~~~~~~~~~~p~~Gl~~d~~G~L~v~d~~~g~~~v~-----~~g-~~~  149 (239)
                      .-.+|...|-+..+ .++-|..|..||.. -+-+......++|.  .|+|++|.++++......+++.     ..| .+.
T Consensus       102 ~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~pi--~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~t  179 (311)
T KOG1446|consen  102 RVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRPI--AAFDPEGLIFALANGSELIKLYDLRSFDKGPFTT  179 (311)
T ss_pred             eEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCCcc--eeECCCCcEEEEecCCCeEEEEEecccCCCCcee
Confidence            34567777755555 44477788888742 11122334456664  8999999988887666555543     234 444


Q ss_pred             EecccCCccccccccEEEcCCC-CEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecCCC----CCcceEE
Q 026389          150 LASHVNGSRINLADDLIAATDG-SIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSL----FFANGVA  224 (239)
Q Consensus       150 l~~~~~g~~~~~pn~l~vd~dG-~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~~l----~~pnGia  224 (239)
                      +.-..  ......++|.+.+|| .|.++...                  +.++.+|.=+|.+..-....    ..|-+.+
T Consensus       180 f~i~~--~~~~ew~~l~FS~dGK~iLlsT~~------------------s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~  239 (311)
T KOG1446|consen  180 FSITD--NDEAEWTDLEFSPDGKSILLSTNA------------------SFIYLLDAFDGTVKSTFSGYPNAGNLPLSAT  239 (311)
T ss_pred             EccCC--CCccceeeeEEcCCCCEEEEEeCC------------------CcEEEEEccCCcEeeeEeeccCCCCcceeEE
Confidence            43211  233457899999999 56777654                  56777776666643333333    3445788


Q ss_pred             EcCCCCEEEEEeC
Q 026389          225 LSKDEDYLVVCET  237 (239)
Q Consensus       225 ~s~dg~~lyvadt  237 (239)
                      |+||+++++..+.
T Consensus       240 ftPds~Fvl~gs~  252 (311)
T KOG1446|consen  240 FTPDSKFVLSGSD  252 (311)
T ss_pred             ECCCCcEEEEecC
Confidence            9999999887654

>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins

Probab=97.78  E-value=4.6e-05  Score=42.05  Aligned_cols=21  Identities=24%  Similarity=0.504  Sum_probs=18.9

Q ss_pred             ccccccEEEcCCCCEEEEeCC
Q 026389          159 INLADDLIAATDGSIYFSVAS  179 (239)
Q Consensus       159 ~~~pn~l~vd~dG~iy~td~~  179 (239)
                      |+.|.|++++++|+||++|..
T Consensus         1 f~~P~gvav~~~g~i~VaD~~   21 (28)
T PF01436_consen    1 FNYPHGVAVDSDGNIYVADSG   21 (28)
T ss_dssp             BSSEEEEEEETTSEEEEEECC
T ss_pred             CcCCcEEEEeCCCCEEEEECC
Confidence            467999999999999999965

For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.

>PRK04792 tolB translocation protein TolB; Provisional

Probab=97.78  E-value=0.0022  Score=58.86  Aligned_cols=134  Identities=11%  Similarity=0.130  Sum_probs=80.8

Q ss_pred             eEEEcCCCC-EEE-EeCCC--eEEEEecC-CcEEEeeeccCcCccCeEEcCCCC-EEEE-eCC--CCeEEEc-cCC-ceE
Q 026389           81 DVCVDRNGV-LYT-ATRDG--WIKRLHKN-GTWENWKLIGGDTLLGITTTQENE-ILVC-DAD--KGLLKVT-EEG-VTV  149 (239)
Q Consensus        81 ~ia~d~~G~-ly~-~~~~g--~I~~~~~~-G~~~~~~~~~~~p~~Gl~~d~~G~-L~v~-d~~--~g~~~v~-~~g-~~~  149 (239)
                      ..+|+|||+ |++ .+.+|  .|+.++.+ ++.+.+........ ..++.+||+ |+++ +..  ..++.++ .+| .+.
T Consensus       266 ~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~~lt~~~~~~~-~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~  344 (448)
T PRK04792        266 APRFSPDGKKLALVLSKDGQPEIYVVDIATKALTRITRHRAIDT-EPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSR  344 (448)
T ss_pred             CeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeEECccCCCCcc-ceEECCCCCEEEEEECCCCCceEEEEECCCCCEEE
Confidence            468999886 554 44555  59999864 45544433333445 678889996 4443 322  2355666 445 444


Q ss_pred             EecccCCccccccccEEEcCCC-CEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecCCCCCcceEEEcCC
Q 026389          150 LASHVNGSRINLADDLIAATDG-SIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKD  228 (239)
Q Consensus       150 l~~~~~g~~~~~pn~l~vd~dG-~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~~l~~pnGia~s~d  228 (239)
                      +.  .++.   .....++++|| .||++....               +..+|+++|.++++.+.+... ..-...+++||
T Consensus       345 Lt--~~g~---~~~~~~~SpDG~~l~~~~~~~---------------g~~~I~~~dl~~g~~~~lt~~-~~d~~ps~spd  403 (448)
T PRK04792        345 LT--FEGE---QNLGGSITPDGRSMIMVNRTN---------------GKFNIARQDLETGAMQVLTST-RLDESPSVAPN  403 (448)
T ss_pred             Ee--cCCC---CCcCeeECCCCCEEEEEEecC---------------CceEEEEEECCCCCeEEccCC-CCCCCceECCC
Confidence            42  1221   12346889999 577765431               134799999998887766533 12223479999


Q ss_pred             CCEEEEEe
Q 026389          229 EDYLVVCE  236 (239)
Q Consensus       229 g~~lyvad  236 (239)
                      |+.|+++.
T Consensus       404 G~~I~~~~  411 (448)
T PRK04792        404 GTMVIYST  411 (448)
T ss_pred             CCEEEEEE
Confidence            99887654

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=97.78  E-value=0.0022  Score=58.51  Aligned_cols=136  Identities=18%  Similarity=0.235  Sum_probs=89.3

Q ss_pred             ceEEEcCCCCEEEEeCCCeEEEEecCC-cE--EEeeeccCcCccCeEEcCCCCEEEEeCCCCeEEEc-cCCceEEecccC
Q 026389           80 EDVCVDRNGVLYTATRDGWIKRLHKNG-TW--ENWKLIGGDTLLGITTTQENEILVCDADKGLLKVT-EEGVTVLASHVN  155 (239)
Q Consensus        80 e~ia~d~~G~ly~~~~~g~I~~~~~~G-~~--~~~~~~~~~p~~Gl~~d~~G~L~v~d~~~g~~~v~-~~g~~~l~~~~~  155 (239)
                      .+++.+..|.+|+...|..+.+++..+ ..  ....+.+..|. |+++..+|.+.+.....+++.+. ..+...+--.  
T Consensus       367 ~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~-~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~--  443 (603)
T KOG0318|consen  367 KGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPK-GLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIG--  443 (603)
T ss_pred             EEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCce-eEEEcCCCCEEEEEecCcEEEEecCCcceeeccc--
Confidence            356666668888888888888886422 11  12246678899 99999988655554456676665 3333322111  


Q ss_pred             CccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeE---EEecCCCCCcceEEEcCCCCEE
Q 026389          156 GSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNET---SILLDSLFFANGVALSKDEDYL  232 (239)
Q Consensus       156 g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~---~~~~~~l~~pnGia~s~dg~~l  232 (239)
                          ..+..+++.++|....-...                 .|+|+.|...+.++   .+..+....+.-|++||||.+|
T Consensus       444 ----y~~s~vAv~~~~~~vaVGG~-----------------Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yl  502 (603)
T KOG0318|consen  444 ----YESSAVAVSPDGSEVAVGGQ-----------------DGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYL  502 (603)
T ss_pred             ----cccceEEEcCCCCEEEEecc-----------------cceEEEEEecCCcccceeeeecccCCceEEEECCCCcEE
Confidence                23678999999964433222                 47788887765443   2334555677899999999999


Q ss_pred             EEEeCCC
Q 026389          233 VVCETFK  239 (239)
Q Consensus       233 yvadt~~  239 (239)
                      .++|..|
T Consensus       503 a~~Da~r  509 (603)
T KOG0318|consen  503 AAGDASR  509 (603)
T ss_pred             EEeccCC
Confidence            9888654

>PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function

Probab=97.74  E-value=0.00083  Score=62.79  Aligned_cols=153  Identities=19%  Similarity=0.347  Sum_probs=85.7

Q ss_pred             CcceEEE---cC-CCCEEEEe--CCCeEEEEecCCcEEEeeeccCcCccCeEEcCCCCEEEEeCCC-C-eEEEc-cC---
Q 026389           78 GPEDVCV---DR-NGVLYTAT--RDGWIKRLHKNGTWENWKLIGGDTLLGITTTQENEILVCDADK-G-LLKVT-EE---  145 (239)
Q Consensus        78 gPe~ia~---d~-~G~ly~~~--~~g~I~~~~~~G~~~~~~~~~~~p~~Gl~~d~~G~L~v~d~~~-g-~~~v~-~~---  145 (239)
                      .=|.+++   ++ .+.+|.++  .++.||||-++......    .+.. +-....+|+|||+-... + .-.+. ..   
T Consensus       245 ~HE~a~v~~~~~~~~vvY~gDD~~~~~lYkFVs~~~~~~~----~~~~-~~~ll~~GtLyaak~~~~g~~~Wv~L~~~~~  319 (524)
T PF05787_consen  245 AHEAAAVVLADPGRVVVYMGDDGRNGYLYKFVSDKPWDPG----DRAA-NRDLLDEGTLYAAKFNQDGTGEWVPLGHGQG  319 (524)
T ss_pred             cccceeEEeecCCeEEEEEEecCCCCeEEEEecCCCCCCc----ccch-hhhhhhCCEeceEEECCCCcEEEEECCCccc
Confidence            4456676   54 34678776  67889998765543210    0111 22223567888875432 2 11222 10   


Q ss_pred             ------C----ceEEe------cccCCccccccccEEEcCC-CCEEEEeCCCCcCccc-c-cccceeecCCceEEEEeCC
Q 026389          146 ------G----VTVLA------SHVNGSRINLADDLIAATD-GSIYFSVASTKFGLHN-W-GLDLLEAKPHGKLLKYDPS  206 (239)
Q Consensus       146 ------g----~~~l~------~~~~g~~~~~pn~l~vd~d-G~iy~td~~~~~~~~~-~-~~~~~e~~~~g~v~~~d~~  206 (239)
                            +    ..++.      ......++..|.|+++++. |.+||+.++..-.... . ..........|+|++|+++
T Consensus       320 ~l~~~~~~~~~a~v~~~tr~aA~~~GAT~f~RpEgi~~~p~~g~vY~a~T~~~~r~~~~~~~~n~~~~n~~G~I~r~~~~  399 (524)
T PF05787_consen  320 GLTAKNGFADQADVLIETRRAADAVGATPFDRPEGITVNPDDGEVYFALTNNSGRGESDVDAANPRAGNGYGQIYRYDPD  399 (524)
T ss_pred             ccccCCCCCChHHhhhhhhhccccCccccccCccCeeEeCCCCEEEEEEecCCCCcccccccCCcccCCcccEEEEeccc
Confidence                  1    11111      1112347899999999996 7999987663311000 0 0011124467999999987


Q ss_pred             CC-------eEEEec------------------CCCCCcceEEEcCCCCEEEEEe
Q 026389          207 LN-------ETSILL------------------DSLFFANGVALSKDEDYLVVCE  236 (239)
Q Consensus       207 ~~-------~~~~~~------------------~~l~~pnGia~s~dg~~lyvad  236 (239)
                      ++       +.+.++                  ..+..|.+|+|+++|+ |||+|
T Consensus       400 ~~d~~~~~f~~~~~~~~g~~~~~~~~~~~~~~~~~f~sPDNL~~d~~G~-LwI~e  453 (524)
T PF05787_consen  400 GNDHAATTFTWELFLVGGDPTDASGNGSNKCDDNGFASPDNLAFDPDGN-LWIQE  453 (524)
T ss_pred             CCccccceeEEEEEEEecCcccccccccCcccCCCcCCCCceEECCCCC-EEEEe
Confidence            65       333332                  1267899999999999 55544

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=97.74  E-value=0.00014  Score=65.13  Aligned_cols=89  Identities=20%  Similarity=0.255  Sum_probs=56.2

Q ss_pred             CEEEEeCCCCeEEEccCC-ceEEecccCCccccccccEEEcCCCC-EEEEeCCCCcCcccccccceeecCCceEEEEeCC
Q 026389          129 EILVCDADKGLLKVTEEG-VTVLASHVNGSRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPS  206 (239)
Q Consensus       129 ~L~v~d~~~g~~~v~~~g-~~~l~~~~~g~~~~~pn~l~vd~dG~-iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~  206 (239)
                      -+||+++..+.+.+-+.. .+++.....+.  ....++.+.+||+ +|+++.                  .|.|.++|..
T Consensus         7 l~~V~~~~~~~v~viD~~t~~~~~~i~~~~--~~h~~~~~s~Dgr~~yv~~r------------------dg~vsviD~~   66 (369)
T PF02239_consen    7 LFYVVERGSGSVAVIDGATNKVVARIPTGG--APHAGLKFSPDGRYLYVANR------------------DGTVSVIDLA   66 (369)
T ss_dssp             EEEEEEGGGTEEEEEETTT-SEEEEEE-ST--TEEEEEE-TT-SSEEEEEET------------------TSEEEEEETT
T ss_pred             EEEEEecCCCEEEEEECCCCeEEEEEcCCC--CceeEEEecCCCCEEEEEcC------------------CCeEEEEECC
Confidence            356788777777654221 23322211121  1245678899995 888863                  3789999999


Q ss_pred             CCeEEEecCCCCCcceEEEcCCCCEEEEEeC
Q 026389          207 LNETSILLDSLFFANGVALSKDEDYLVVCET  237 (239)
Q Consensus       207 ~~~~~~~~~~l~~pnGia~s~dg~~lyvadt  237 (239)
                      ++++..-+.....|.|+++|+||+++|+++.
T Consensus        67 ~~~~v~~i~~G~~~~~i~~s~DG~~~~v~n~   97 (369)
T PF02239_consen   67 TGKVVATIKVGGNPRGIAVSPDGKYVYVANY   97 (369)
T ss_dssp             SSSEEEEEE-SSEEEEEEE--TTTEEEEEEE
T ss_pred             cccEEEEEecCCCcceEEEcCCCCEEEEEec
Confidence            8887655555678999999999999999863

...

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=97.71  E-value=0.00077  Score=55.01  Aligned_cols=100  Identities=18%  Similarity=0.339  Sum_probs=67.4

Q ss_pred             CcCccCeEEcCCCCEEEEeCCCCeEEEccCC---ceEEecccCCccccccccEEEcCCCCEEEEeCCCCcCcccccccce
Q 026389          116 GDTLLGITTTQENEILVCDADKGLLKVTEEG---VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLL  192 (239)
Q Consensus       116 ~~p~~Gl~~d~~G~L~v~d~~~g~~~v~~~g---~~~l~~~~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~  192 (239)
                      |.-. |++-|. .+|+.+|...-+...|+.-   ...+.-..+|.|....|.+..= ||.+|.--..             
T Consensus       131 GeGW-gLt~d~-~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~lyANVw~-------------  194 (262)
T COG3823         131 GEGW-GLTSDD-KNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGELYANVWQ-------------  194 (262)
T ss_pred             Ccce-eeecCC-cceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccEEEEeeee-------------
Confidence            4555 777653 2588787665566666422   2222224578888888888764 6777765433             


Q ss_pred             eecCCceEEEEeCCCCeEEEecC--C-----------CCCcceEEEcCCCCEEEEE
Q 026389          193 EAKPHGKLLKYDPSLNETSILLD--S-----------LFFANGVALSKDEDYLVVC  235 (239)
Q Consensus       193 e~~~~g~v~~~d~~~~~~~~~~~--~-----------l~~pnGia~s~dg~~lyva  235 (239)
                          ..++.|+||++|++...++  +           ..-+||||..++++.+|++
T Consensus       195 ----t~~I~rI~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iT  246 (262)
T COG3823         195 ----TTRIARIDPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLIT  246 (262)
T ss_pred             ----ecceEEEcCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEe
Confidence                3578999999998876643  2           2357999999999889986

>PRK01742 tolB translocation protein TolB; Provisional

Probab=97.70  E-value=0.0028  Score=57.78  Aligned_cols=149  Identities=13%  Similarity=0.185  Sum_probs=76.0

Q ss_pred             eEEEcCCCC-EEEEe-C--CCeEEEEecC-CcEEEeeeccCcCccCeEEcCCCC-EEEEeCCCC---eEEEcc-CC-ceE
Q 026389           81 DVCVDRNGV-LYTAT-R--DGWIKRLHKN-GTWENWKLIGGDTLLGITTTQENE-ILVCDADKG---LLKVTE-EG-VTV  149 (239)
Q Consensus        81 ~ia~d~~G~-ly~~~-~--~g~I~~~~~~-G~~~~~~~~~~~p~~Gl~~d~~G~-L~v~d~~~g---~~~v~~-~g-~~~  149 (239)
                      +++|+|||+ |++.+ .  +.+|+.++.. |+.+.+....+.-. ..++.+||+ |+++....|   ++.++. .+ .+.
T Consensus       208 ~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~~-~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~~~  286 (429)
T PRK01742        208 SPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGHNG-APAFSPDGSRLAFASSKDGVLNIYVMGANGGTPSQ  286 (429)
T ss_pred             cceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCccC-ceeECCCCCEEEEEEecCCcEEEEEEECCCCCeEe
Confidence            359999985 43333 2  3479999864 44444443344555 788999996 555433333   445553 44 444


Q ss_pred             EecccCCccccccccEEEcCCCC-EEEEeCCC-C---cCcc--c----------cc------ccceeecCCceEEEEeCC
Q 026389          150 LASHVNGSRINLADDLIAATDGS-IYFSVAST-K---FGLH--N----------WG------LDLLEAKPHGKLLKYDPS  206 (239)
Q Consensus       150 l~~~~~g~~~~~pn~l~vd~dG~-iy~td~~~-~---~~~~--~----------~~------~~~~e~~~~g~v~~~d~~  206 (239)
                      +... .+    .....++++||+ |+|+.... .   |...  .          +.      ...+......+++++|..
T Consensus       287 lt~~-~~----~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l~~~~~~~~~SpDG~~ia~~~~~~i~~~Dl~  361 (429)
T PRK01742        287 LTSG-AG----NNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLVGGRGYSAQISADGKTLVMINGDNVVKQDLT  361 (429)
T ss_pred             eccC-CC----CcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEecCCCCCccCCCCCCEEEEEcCCCEEEEECC
Confidence            4321 11    234678888884 66653211 1   0000  0          00      000100111345566666


Q ss_pred             CCeEEEecCCCCCcceEEEcCCCCEEEEEe
Q 026389          207 LNETSILLDSLFFANGVALSKDEDYLVVCE  236 (239)
Q Consensus       207 ~~~~~~~~~~l~~pnGia~s~dg~~lyvad  236 (239)
                      +++.+.+.... .-..++|+|||+.|+++.
T Consensus       362 ~g~~~~lt~~~-~~~~~~~sPdG~~i~~~s  390 (429)
T PRK01742        362 SGSTEVLSSTF-LDESPSISPNGIMIIYSS  390 (429)
T ss_pred             CCCeEEecCCC-CCCCceECCCCCEEEEEE
Confidence            66555444332 235677788887776654

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=97.69  E-value=0.0078  Score=49.57  Aligned_cols=108  Identities=20%  Similarity=0.327  Sum_probs=67.6

Q ss_pred             EEcCCCCEEEEeCCCeEEEEec-CCcEEEeeeccCcCccCeEEcCCCCEEEEeCCCCeEEEc-cCC-ceEEe-c-ccCCc
Q 026389           83 CVDRNGVLYTATRDGWIKRLHK-NGTWENWKLIGGDTLLGITTTQENEILVCDADKGLLKVT-EEG-VTVLA-S-HVNGS  157 (239)
Q Consensus        83 a~d~~G~ly~~~~~g~I~~~~~-~G~~~~~~~~~~~p~~Gl~~d~~G~L~v~d~~~g~~~v~-~~g-~~~l~-~-~~~g~  157 (239)
                      ++..+|.+|+++.++.|+.+|. +|+.. |......+......-.++++|++.....++.++ .+| ...-. . ..+..
T Consensus        32 ~~~~~~~v~~~~~~~~l~~~d~~tG~~~-W~~~~~~~~~~~~~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~  110 (238)
T PF13360_consen   32 AVPDGGRVYVASGDGNLYALDAKTGKVL-WRFDLPGPISGAPVVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPA  110 (238)
T ss_dssp             EEEETTEEEEEETTSEEEEEETTTSEEE-EEEECSSCGGSGEEEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTC
T ss_pred             EEEeCCEEEEEcCCCEEEEEECCCCCEE-EEeeccccccceeeecccccccccceeeeEecccCCcceeeeecccccccc
Confidence            4445789999999999999996 77643 333323332033234577899998766788888 788 43321 1 11222


Q ss_pred             cccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeE
Q 026389          158 RINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNET  210 (239)
Q Consensus       158 ~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~  210 (239)
                      ........+++ ++.+|+....                  |.|+.+|+++|++
T Consensus       111 ~~~~~~~~~~~-~~~~~~~~~~------------------g~l~~~d~~tG~~  144 (238)
T PF13360_consen  111 GVRSSSSPAVD-GDRLYVGTSS------------------GKLVALDPKTGKL  144 (238)
T ss_dssp             STB--SEEEEE-TTEEEEEETC------------------SEEEEEETTTTEE
T ss_pred             ccccccCceEe-cCEEEEEecc------------------CcEEEEecCCCcE
Confidence            22333444544 4577887753                  7899999988876

...

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=97.65  E-value=0.0052  Score=52.46  Aligned_cols=134  Identities=14%  Similarity=0.118  Sum_probs=91.2

Q ss_pred             CcceEEEcCCCCEEEEeCCCeEEEEec-CCc-EEEeeeccCcCccCeEEcC-CCCEEEEeCCCCeEEEc--cCC--ceEE
Q 026389           78 GPEDVCVDRNGVLYTATRDGWIKRLHK-NGT-WENWKLIGGDTLLGITTTQ-ENEILVCDADKGLLKVT--EEG--VTVL  150 (239)
Q Consensus        78 gPe~ia~d~~G~ly~~~~~g~I~~~~~-~G~-~~~~~~~~~~p~~Gl~~d~-~G~L~v~d~~~g~~~v~--~~g--~~~l  150 (239)
                      .-.+..+-.|+.|.+++.|.+...||. .|+ ++.|....+..+ +|.+.+ +++.||+-.-...-++.  ..|  ++.+
T Consensus       147 ylScC~f~dD~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~-slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF  225 (343)
T KOG0286|consen  147 YLSCCRFLDDNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVM-SLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTF  225 (343)
T ss_pred             eeEEEEEcCCCceEecCCCceEEEEEcccceEEEEecCCcccEE-EEecCCCCCCeEEecccccceeeeeccCcceeEee
Confidence            344556666999999999999999995 454 556666667777 888888 88999986655555553  455  5554


Q ss_pred             ecccCCccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCC-CeEEEecC--CCCCcceEEEcC
Q 026389          151 ASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSL-NETSILLD--SLFFANGVALSK  227 (239)
Q Consensus       151 ~~~~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~-~~~~~~~~--~l~~pnGia~s~  227 (239)
                      ....     .-.|.+.+-|+|.-+.|.+.                 .+..-.||... .++.+...  .....+.++||.
T Consensus       226 ~ghe-----sDINsv~ffP~G~afatGSD-----------------D~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~  283 (343)
T KOG0286|consen  226 EGHE-----SDINSVRFFPSGDAFATGSD-----------------DATCRLYDLRADQELAVYSHDSIICGITSVAFSK  283 (343)
T ss_pred             cccc-----cccceEEEccCCCeeeecCC-----------------CceeEEEeecCCcEEeeeccCcccCCceeEEEcc
Confidence            3322     23689999999998888664                 34444455543 34444432  234568999999


Q ss_pred             CCCEEEE
Q 026389          228 DEDYLVV  234 (239)
Q Consensus       228 dg~~lyv  234 (239)
                      .|++||.
T Consensus       284 SGRlLfa  290 (343)
T KOG0286|consen  284 SGRLLFA  290 (343)
T ss_pred             cccEEEe
Confidence            9998875

>PRK04043 tolB translocation protein TolB; Provisional

Probab=97.64  E-value=0.0048  Score=56.26  Aligned_cols=131  Identities=11%  Similarity=0.068  Sum_probs=81.0

Q ss_pred             EEEcCCCC--EEEEe-C--CCeEEEEec-CCcEEEeeeccCcCccCeEEcCCCC-EEEEeCC---CCeEEEc-cCC-ceE
Q 026389           82 VCVDRNGV--LYTAT-R--DGWIKRLHK-NGTWENWKLIGGDTLLGITTTQENE-ILVCDAD---KGLLKVT-EEG-VTV  149 (239)
Q Consensus        82 ia~d~~G~--ly~~~-~--~g~I~~~~~-~G~~~~~~~~~~~p~~Gl~~d~~G~-L~v~d~~---~g~~~v~-~~g-~~~  149 (239)
                      ..|+|||+  +|..+ .  +..|+.++. .|+.+.+....+... ...+.+||+ |+++...   ..++.++ ..| .+.
T Consensus       193 p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g~~~-~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~~~  271 (419)
T PRK04043        193 PKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQGMLV-VSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTLTQ  271 (419)
T ss_pred             EEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCCcEE-eeEECCCCCEEEEEEccCCCcEEEEEECCCCcEEE
Confidence            38889885  66544 3  467999986 455555544444444 566889994 5544322   2456666 445 455


Q ss_pred             EecccCCccccccccEEEcCCC-CEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecCCCCCcceEEEcCC
Q 026389          150 LASHVNGSRINLADDLIAATDG-SIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKD  228 (239)
Q Consensus       150 l~~~~~g~~~~~pn~l~vd~dG-~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~~l~~pnGia~s~d  228 (239)
                      +... .+    .-....+.||| .|||+....               +...||++|.++++.+.+...... + .++|||
T Consensus       272 LT~~-~~----~d~~p~~SPDG~~I~F~Sdr~---------------g~~~Iy~~dl~~g~~~rlt~~g~~-~-~~~SPD  329 (419)
T PRK04043        272 ITNY-PG----IDVNGNFVEDDKRIVFVSDRL---------------GYPNIFMKKLNSGSVEQVVFHGKN-N-SSVSTY  329 (419)
T ss_pred             cccC-CC----ccCccEECCCCCEEEEEECCC---------------CCceEEEEECCCCCeEeCccCCCc-C-ceECCC
Confidence            4322 11    11234799999 688886431               235899999999888666542211 3 489999


Q ss_pred             CCEEEEE
Q 026389          229 EDYLVVC  235 (239)
Q Consensus       229 g~~lyva  235 (239)
                      |++|.++
T Consensus       330 G~~Ia~~  336 (419)
T PRK04043        330 KNYIVYS  336 (419)
T ss_pred             CCEEEEE
Confidence            9988654

>PRK03629 tolB translocation protein TolB; Provisional

Probab=97.55  E-value=0.0042  Score=56.68  Aligned_cols=116  Identities=15%  Similarity=0.072  Sum_probs=70.1

Q ss_pred             eEEEEecCCc-EEEeeeccCcCccCeEEcCCCC-E-EEEeCC-C-CeEEEc-cCC-ceEEecccCCccccccccEEEcCC
Q 026389           98 WIKRLHKNGT-WENWKLIGGDTLLGITTTQENE-I-LVCDAD-K-GLLKVT-EEG-VTVLASHVNGSRINLADDLIAATD  170 (239)
Q Consensus        98 ~I~~~~~~G~-~~~~~~~~~~p~~Gl~~d~~G~-L-~v~d~~-~-g~~~v~-~~g-~~~l~~~~~g~~~~~pn~l~vd~d  170 (239)
                      +|+.+|.+|. .+.+........ ..++.+||+ | |+.... . .++..+ ..| .+.+.. ..+    .....+++||
T Consensus       180 ~l~~~d~dg~~~~~lt~~~~~~~-~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~-~~~----~~~~~~~SPD  253 (429)
T PRK03629        180 ELRVSDYDGYNQFVVHRSPQPLM-SPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVAS-FPR----HNGAPAFSPD  253 (429)
T ss_pred             eEEEEcCCCCCCEEeecCCCcee-eeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccC-CCC----CcCCeEECCC
Confidence            5666666653 233322222344 788999996 3 333322 2 344445 445 444432 222    1235799999


Q ss_pred             C-CEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecCCCCCcceEEEcCCCCEEEE
Q 026389          171 G-SIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVV  234 (239)
Q Consensus       171 G-~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~~l~~pnGia~s~dg~~lyv  234 (239)
                      | .|+++....               +...||.+|.++++.+.+..+-......+|+|||+.|++
T Consensus       254 G~~La~~~~~~---------------g~~~I~~~d~~tg~~~~lt~~~~~~~~~~wSPDG~~I~f  303 (429)
T PRK03629        254 GSKLAFALSKT---------------GSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAY  303 (429)
T ss_pred             CCEEEEEEcCC---------------CCcEEEEEECCCCCEEEccCCCCCcCceEECCCCCEEEE
Confidence            9 577764321               124699999998888877665455678899999997744

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=97.54  E-value=0.0091  Score=53.73  Aligned_cols=135  Identities=15%  Similarity=0.132  Sum_probs=80.7

Q ss_pred             eEEEcCCCC-EEEE-eCC--CeEEEEecCC-cEEEeeeccCcCccCeEEcCCCC-EEEE-eCC--CCeEEEcc-CC-ceE
Q 026389           81 DVCVDRNGV-LYTA-TRD--GWIKRLHKNG-TWENWKLIGGDTLLGITTTQENE-ILVC-DAD--KGLLKVTE-EG-VTV  149 (239)
Q Consensus        81 ~ia~d~~G~-ly~~-~~~--g~I~~~~~~G-~~~~~~~~~~~p~~Gl~~d~~G~-L~v~-d~~--~g~~~v~~-~g-~~~  149 (239)
                      .++|++||. |++. +.+  ..|+.++.++ +.+.+....+... ...+.++|+ |+++ +..  ..++.++. .+ .+.
T Consensus       238 ~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~-~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~  316 (417)
T TIGR02800       238 APAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLTRLTNGPGIDT-EPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRR  316 (417)
T ss_pred             ceEECCCCCEEEEEECCCCCccEEEEECCCCCEEECCCCCCCCC-CEEECCCCCEEEEEECCCCCceEEEEECCCCCEEE
Confidence            468999885 6544 333  4699998653 4443333223334 567788885 5444 322  13556663 44 443


Q ss_pred             EecccCCccccccccEEEcCCC-CEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecCCCCCcceEEEcCC
Q 026389          150 LASHVNGSRINLADDLIAATDG-SIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKD  228 (239)
Q Consensus       150 l~~~~~g~~~~~pn~l~vd~dG-~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~~l~~pnGia~s~d  228 (239)
                      +...  +   ......++++|| .|+++....               +..+|+.+|.+++..+.+... ......+|+||
T Consensus       317 l~~~--~---~~~~~~~~spdg~~i~~~~~~~---------------~~~~i~~~d~~~~~~~~l~~~-~~~~~p~~spd  375 (417)
T TIGR02800       317 LTFR--G---GYNASPSWSPDGDLIAFVHREG---------------GGFNIAVMDLDGGGERVLTDT-GLDESPSFAPN  375 (417)
T ss_pred             eecC--C---CCccCeEECCCCCEEEEEEccC---------------CceEEEEEeCCCCCeEEccCC-CCCCCceECCC
Confidence            3321  1   234567899998 466665431               235899999988777666543 23455689999


Q ss_pred             CCEEEEEeC
Q 026389          229 EDYLVVCET  237 (239)
Q Consensus       229 g~~lyvadt  237 (239)
                      |+.|+++..
T Consensus       376 g~~l~~~~~  384 (417)
T TIGR02800       376 GRMILYATT  384 (417)
T ss_pred             CCEEEEEEe
Confidence            998877643

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>PRK01742 tolB translocation protein TolB; Provisional

Probab=97.52  E-value=0.0055  Score=55.87  Aligned_cols=118  Identities=14%  Similarity=0.053  Sum_probs=69.9

Q ss_pred             CeEEEEecCCc-EEEeeeccCcCccCeEEcCCCC-EEEE-eCC-C-CeEEEc-cCC-ceEEecccCCccccccccEEEcC
Q 026389           97 GWIKRLHKNGT-WENWKLIGGDTLLGITTTQENE-ILVC-DAD-K-GLLKVT-EEG-VTVLASHVNGSRINLADDLIAAT  169 (239)
Q Consensus        97 g~I~~~~~~G~-~~~~~~~~~~p~~Gl~~d~~G~-L~v~-d~~-~-g~~~v~-~~g-~~~l~~~~~g~~~~~pn~l~vd~  169 (239)
                      .+|+.+|.+|. .+.+........ ..++.+||+ |+.+ ... . .++..+ ..| .+.+.. ..+.    ...+++.|
T Consensus       184 ~~i~i~d~dg~~~~~lt~~~~~v~-~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~-~~g~----~~~~~wSP  257 (429)
T PRK01742        184 YEVRVADYDGFNQFIVNRSSQPLM-SPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVAS-FRGH----NGAPAFSP  257 (429)
T ss_pred             EEEEEECCCCCCceEeccCCCccc-cceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEec-CCCc----cCceeECC
Confidence            36666666664 222222223345 788999996 4333 221 1 244455 455 444432 2331    23689999


Q ss_pred             CCC-EEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecCCCCCcceEEEcCCCCEEEEE
Q 026389          170 DGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVC  235 (239)
Q Consensus       170 dG~-iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~~l~~pnGia~s~dg~~lyva  235 (239)
                      ||+ |+++....               +.-+||.+|.++++.+.+..+-......+|+|||+.|+++
T Consensus       258 DG~~La~~~~~~---------------g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~i~f~  309 (429)
T PRK01742        258 DGSRLAFASSKD---------------GVLNIYVMGANGGTPSQLTSGAGNNTEPSWSPDGQSILFT  309 (429)
T ss_pred             CCCEEEEEEecC---------------CcEEEEEEECCCCCeEeeccCCCCcCCEEECCCCCEEEEE
Confidence            995 66654321               1236899999888877776554556789999999987654

>TIGR03032 conserved hypothetical protein TIGR03032

Probab=97.52  E-value=0.0018  Score=56.00  Aligned_cols=136  Identities=16%  Similarity=0.209  Sum_probs=79.0

Q ss_pred             cceEEEcCCCCEEEEe-CCCeEEEEecCCcE-EEee---------eccCcCccCeEEcCCCC-EEEEeCCC----CeEEE
Q 026389           79 PEDVCVDRNGVLYTAT-RDGWIKRLHKNGTW-ENWK---------LIGGDTLLGITTTQENE-ILVCDADK----GLLKV  142 (239)
Q Consensus        79 Pe~ia~d~~G~ly~~~-~~g~I~~~~~~G~~-~~~~---------~~~~~p~~Gl~~d~~G~-L~v~d~~~----g~~~v  142 (239)
                      -.++++ .++.+|+.. .-..+-.++++-+. ..|.         +..-+-+ ||++. +|+ -||+--+.    +-++-
T Consensus       105 iHdia~-~~~~l~fVNT~fSCLatl~~~~SF~P~WkPpFIs~la~eDRCHLN-GlA~~-~g~p~yVTa~~~sD~~~gWR~  181 (335)
T TIGR03032       105 AHDLAL-GAGRLLFVNTLFSCLATVSPDYSFVPLWKPPFISKLAPEDRCHLN-GMALD-DGEPRYVTALSQSDVADGWRE  181 (335)
T ss_pred             hhheee-cCCcEEEEECcceeEEEECCCCccccccCCccccccCccCceeec-ceeee-CCeEEEEEEeeccCCcccccc
Confidence            345666 344555433 44556566554332 1221         2234678 99995 565 67764221    22222


Q ss_pred             c-cCC--c-eEEecccCCccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecCCCC
Q 026389          143 T-EEG--V-TVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLF  218 (239)
Q Consensus       143 ~-~~g--~-~~l~~~~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~~l~  218 (239)
                      . .+|  + .+-..+.--..+.+|..-... +|++||+|+.                 .|.+.++|+++|+.+.+..--.
T Consensus       182 ~~~~gG~vidv~s~evl~~GLsmPhSPRWh-dgrLwvldsg-----------------tGev~~vD~~~G~~e~Va~vpG  243 (335)
T TIGR03032       182 GRRDGGCVIDIPSGEVVASGLSMPHSPRWY-QGKLWLLNSG-----------------RGELGYVDPQAGKFQPVAFLPG  243 (335)
T ss_pred             cccCCeEEEEeCCCCEEEcCccCCcCCcEe-CCeEEEEECC-----------------CCEEEEEcCCCCcEEEEEECCC
Confidence            2 222  1 110000000123344444443 6899999987                 6899999999899988887778


Q ss_pred             CcceEEEcCCCCEEEEEeC
Q 026389          219 FANGVALSKDEDYLVVCET  237 (239)
Q Consensus       219 ~pnGia~s~dg~~lyvadt  237 (239)
                      +|.|++|.  |++++|+=|
T Consensus       244 ~~rGL~f~--G~llvVgmS  260 (335)
T TIGR03032       244 FTRGLAFA--GDFAFVGLS  260 (335)
T ss_pred             CCccccee--CCEEEEEec
Confidence            99999998  998888644

This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.

>PRK02889 tolB translocation protein TolB; Provisional

Probab=97.51  E-value=0.0054  Score=55.93  Aligned_cols=118  Identities=9%  Similarity=0.047  Sum_probs=69.1

Q ss_pred             CeEEEEecCCcE-EEeeeccCcCccCeEEcCCCC-EEEEeCCC---CeEEEc-cCC-ceEEecccCCccccccccEEEcC
Q 026389           97 GWIKRLHKNGTW-ENWKLIGGDTLLGITTTQENE-ILVCDADK---GLLKVT-EEG-VTVLASHVNGSRINLADDLIAAT  169 (239)
Q Consensus        97 g~I~~~~~~G~~-~~~~~~~~~p~~Gl~~d~~G~-L~v~d~~~---g~~~v~-~~g-~~~l~~~~~g~~~~~pn~l~vd~  169 (239)
                      .+|+.+|.+|+. +.+......-. ..++.+||+ |+.+....   .++..+ ..| .+.+.. ..+    .....++.|
T Consensus       176 ~~L~~~D~dG~~~~~l~~~~~~v~-~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~-~~g----~~~~~~~SP  249 (427)
T PRK02889        176 YQLQISDADGQNAQSALSSPEPII-SPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVAN-FKG----SNSAPAWSP  249 (427)
T ss_pred             cEEEEECCCCCCceEeccCCCCcc-cceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeec-CCC----CccceEECC
Confidence            356666666642 22222223334 778889995 44433222   255556 455 444432 222    124678999


Q ss_pred             CC-CEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecCCCCCcceEEEcCCCCEEEEE
Q 026389          170 DG-SIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVC  235 (239)
Q Consensus       170 dG-~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~~l~~pnGia~s~dg~~lyva  235 (239)
                      || .|+++-..               .+.-+||.+|.++++.+.+...-..-...+|+|||++|+++
T Consensus       250 DG~~la~~~~~---------------~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~  301 (427)
T PRK02889        250 DGRTLAVALSR---------------DGNSQIYTVNADGSGLRRLTQSSGIDTEPFFSPDGRSIYFT  301 (427)
T ss_pred             CCCEEEEEEcc---------------CCCceEEEEECCCCCcEECCCCCCCCcCeEEcCCCCEEEEE
Confidence            99 57776432               12357999998877777665433334567899999987654

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.50  E-value=0.012  Score=50.40  Aligned_cols=151  Identities=18%  Similarity=0.160  Sum_probs=84.2

Q ss_pred             eEeccCCcCCcceEEEcCCCCEEEEe-CCCeEEEEe--cCCcEEEeee---------c-cCcCccCeEEcCCC-CEEEEe
Q 026389           69 TRLGEGILNGPEDVCVDRNGVLYTAT-RDGWIKRLH--KNGTWENWKL---------I-GGDTLLGITTTQEN-EILVCD  134 (239)
Q Consensus        69 ~~l~~g~~~gPe~ia~d~~G~ly~~~-~~g~I~~~~--~~G~~~~~~~---------~-~~~p~~Gl~~d~~G-~L~v~d  134 (239)
                      ++++...+..||+|++-.+|...+++ .+++++.+.  +++.+.....         . ...-- |++.|+.+ +||++-
T Consensus       121 rtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfE-GlA~d~~~~~l~~aK  199 (316)
T COG3204         121 RTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFE-GLAWDPVDHRLFVAK  199 (316)
T ss_pred             EEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCccEEeccceEEeccccCCCCcCce-eeecCCCCceEEEEE
Confidence            55555557889999998666555666 777777654  4443221110         0 01123 89999655 799987


Q ss_pred             CCC--CeEEEc--cCC--ceEEecccCCc--cccccccEEEcCC-CCEEE-EeCCCCcCcccccccceeecCCceEEEEe
Q 026389          135 ADK--GLLKVT--EEG--VTVLASHVNGS--RINLADDLIAATD-GSIYF-SVASTKFGLHNWGLDLLEAKPHGKLLKYD  204 (239)
Q Consensus       135 ~~~--g~~~v~--~~g--~~~l~~~~~g~--~~~~pn~l~vd~d-G~iy~-td~~~~~~~~~~~~~~~e~~~~g~v~~~d  204 (239)
                      ..+  +++.++  ++.  ...........  -+.-..++.+++. |.+++ +|.+                  ++|..+|
T Consensus       200 Er~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ES------------------r~l~Evd  261 (316)
T COG3204         200 ERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFNAITNSLLVLSDES------------------RRLLEVD  261 (316)
T ss_pred             ccCCcEEEEEecCCcccccccccCcccccceEeeccccceecCCCCcEEEEecCC------------------ceEEEEe
Confidence            543  566665  223  11111111111  1233455666653 44443 4433                  5667777


Q ss_pred             CCCCeEEEe---------cCCCCCcceEEEcCCCCEEEEEeCC
Q 026389          205 PSLNETSIL---------LDSLFFANGVALSKDEDYLVVCETF  238 (239)
Q Consensus       205 ~~~~~~~~~---------~~~l~~pnGia~s~dg~~lyvadt~  238 (239)
                      .++.-+..+         -.++..|.|||.+++|..-.|+|.+
T Consensus       262 ~~G~~~~~lsL~~g~~gL~~dipqaEGiamDd~g~lYIvSEPn  304 (316)
T COG3204         262 LSGEVIELLSLTKGNHGLSSDIPQAEGIAMDDDGNLYIVSEPN  304 (316)
T ss_pred             cCCCeeeeEEeccCCCCCcccCCCcceeEECCCCCEEEEecCC
Confidence            653322222         2346789999999999855566654

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=97.49  E-value=0.011  Score=50.66  Aligned_cols=121  Identities=13%  Similarity=0.229  Sum_probs=78.2

Q ss_pred             cCCcceEEEcCCCCEEEEe-CCCeEEEEec----CCcEEEeeec---cCcCccCeEEcCCCC-EEEEeCCCCeEEEc-cC
Q 026389           76 LNGPEDVCVDRNGVLYTAT-RDGWIKRLHK----NGTWENWKLI---GGDTLLGITTTQENE-ILVCDADKGLLKVT-EE  145 (239)
Q Consensus        76 ~~gPe~ia~d~~G~ly~~~-~~g~I~~~~~----~G~~~~~~~~---~~~p~~Gl~~d~~G~-L~v~d~~~g~~~v~-~~  145 (239)
                      ..++--.|+||+|.++... ....|..+|.    .|-.+++.-.   ..+-. +|.|.+||+ |+++....-++.+| -+
T Consensus       140 ~~~~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~-~l~FS~dGK~iLlsT~~s~~~~lDAf~  218 (311)
T KOG1446|consen  140 LSGRPIAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWT-DLEFSPDGKSILLSTNASFIYLLDAFD  218 (311)
T ss_pred             cCCCcceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCcccee-eeEEcCCCCEEEEEeCCCcEEEEEccC
Confidence            3455567999999998554 5557877773    2323333222   23445 899999996 56666555566677 47


Q ss_pred             C--ceEEecccCCccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecCC
Q 026389          146 G--VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDS  216 (239)
Q Consensus       146 g--~~~l~~~~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~~  216 (239)
                      |  ...+... . ...+.|-+..+.|||...++.+.                 .|+|+.|+..+++......+
T Consensus       219 G~~~~tfs~~-~-~~~~~~~~a~ftPds~Fvl~gs~-----------------dg~i~vw~~~tg~~v~~~~~  272 (311)
T KOG1446|consen  219 GTVKSTFSGY-P-NAGNLPLSATFTPDSKFVLSGSD-----------------DGTIHVWNLETGKKVAVLRG  272 (311)
T ss_pred             CcEeeeEeec-c-CCCCcceeEEECCCCcEEEEecC-----------------CCcEEEEEcCCCcEeeEecC
Confidence            7  3333221 1 12345678899999998888765                 68999999887765544443

>COG2133 Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism]

Probab=97.49  E-value=0.0066  Score=54.59  Aligned_cols=59  Identities=17%  Similarity=0.277  Sum_probs=45.4

Q ss_pred             CcceEEEcCCCCEEEEe--C------------CCeEEEEecCCc---------EEEeeeccCcCccCeEEcCC-CCEEEE
Q 026389           78 GPEDVCVDRNGVLYTAT--R------------DGWIKRLHKNGT---------WENWKLIGGDTLLGITTTQE-NEILVC  133 (239)
Q Consensus        78 gPe~ia~d~~G~ly~~~--~------------~g~I~~~~~~G~---------~~~~~~~~~~p~~Gl~~d~~-G~L~v~  133 (239)
                      .-..|++++||.||++.  .            .|+|++++.++.         .+.|......|. |+++++. |+||++
T Consensus       178 ~g~~l~f~pDG~Lyvs~G~~~~~~~aq~~~~~~Gk~~r~~~a~~~~~d~p~~~~~i~s~G~RN~q-Gl~w~P~tg~Lw~~  256 (399)
T COG2133         178 FGGRLVFGPDGKLYVTTGSNGDPALAQDNVSLAGKVLRIDRAGIIPADNPFPNSEIWSYGHRNPQ-GLAWHPVTGALWTT  256 (399)
T ss_pred             CcccEEECCCCcEEEEeCCCCCcccccCccccccceeeeccCcccccCCCCCCcceEEeccCCcc-ceeecCCCCcEEEE
Confidence            34469999999999664  3            278888875442         356777778899 9999987 899999


Q ss_pred             eCCC
Q 026389          134 DADK  137 (239)
Q Consensus       134 d~~~  137 (239)
                      +++.
T Consensus       257 e~g~  260 (399)
T COG2133         257 EHGP  260 (399)
T ss_pred             ecCC
Confidence            9875

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=97.45  E-value=0.0083  Score=50.25  Aligned_cols=140  Identities=14%  Similarity=0.142  Sum_probs=88.3

Q ss_pred             ceEEEcC-CCCEEEEeCCCeEEEEecCCc--EEEeeeccCcCccCeEEcCCCCEEEEeCCCCeEEEc--cCC--ceEEec
Q 026389           80 EDVCVDR-NGVLYTATRDGWIKRLHKNGT--WENWKLIGGDTLLGITTTQENEILVCDADKGLLKVT--EEG--VTVLAS  152 (239)
Q Consensus        80 e~ia~d~-~G~ly~~~~~g~I~~~~~~G~--~~~~~~~~~~p~~Gl~~d~~G~L~v~d~~~g~~~v~--~~g--~~~l~~  152 (239)
                      ..|...| ++.|++++.+|.|+.||.-..  .....+....+...+++++||..+++-..+|...+.  .++  .+.+..
T Consensus       128 n~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P  207 (311)
T KOG0315|consen  128 NTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEP  207 (311)
T ss_pred             ceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceE
Confidence            3577777 578999999999999995222  122222233444378899999888877666665554  233  333221


Q ss_pred             --ccCCccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCC-eEEEecCCC-CCcceEEEcCC
Q 026389          153 --HVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLN-ETSILLDSL-FFANGVALSKD  228 (239)
Q Consensus       153 --~~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~-~~~~~~~~l-~~pnGia~s~d  228 (239)
                        .+.- .-.+.--+...||+....|.++                 ...++.++.++- +++..+++- ..--+.+||.|
T Consensus       208 ~~k~~a-h~~~il~C~lSPd~k~lat~ss-----------------dktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~d  269 (311)
T KOG0315|consen  208 VHKFQA-HNGHILRCLLSPDVKYLATCSS-----------------DKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSAD  269 (311)
T ss_pred             hhheec-ccceEEEEEECCCCcEEEeecC-----------------CceEEEEecCCceeeEEEeecCCceEEeeeeccC
Confidence              1111 1134556788999988888776                 245566665544 555555543 45678999999


Q ss_pred             CCEEEEEeC
Q 026389          229 EDYLVVCET  237 (239)
Q Consensus       229 g~~lyvadt  237 (239)
                      |++|+.+++
T Consensus       270 g~YlvTass  278 (311)
T KOG0315|consen  270 GEYLVTASS  278 (311)
T ss_pred             ccEEEecCC
Confidence            999987764

>PRK02888 nitrous-oxide reductase; Validated

Probab=97.42  E-value=0.008  Score=56.77  Aligned_cols=107  Identities=11%  Similarity=0.126  Sum_probs=64.5

Q ss_pred             EEeeeccCcCccCeEEcCCCC-EEEEeCCCCeEEEc-cCC-c----------eEEecc-cCCccccccccEEEcCCCCEE
Q 026389          109 ENWKLIGGDTLLGITTTQENE-ILVCDADKGLLKVT-EEG-V----------TVLASH-VNGSRINLADDLIAATDGSIY  174 (239)
Q Consensus       109 ~~~~~~~~~p~~Gl~~d~~G~-L~v~d~~~g~~~v~-~~g-~----------~~l~~~-~~g~~~~~pn~l~vd~dG~iy  174 (239)
                      ......+.+|+ |+.+++||+ +|++......+.+. -.. .          ..+..+ .-|   ..|-..++|.+|+.|
T Consensus       314 ~~yIPVGKsPH-GV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevG---lGPLHTaFDg~G~ay  389 (635)
T PRK02888        314 TRYVPVPKNPH-GVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELG---LGPLHTAFDGRGNAY  389 (635)
T ss_pred             EEEEECCCCcc-ceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccC---CCcceEEECCCCCEE
Confidence            44456778999 999999995 77777666666553 111 1          222222 123   357789999999999


Q ss_pred             EEeCCCCcCcccccccceeecCCceEEEEeCCC----------CeEEEecCCCCCcceEEE------cCCCCEEEEEe
Q 026389          175 FSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSL----------NETSILLDSLFFANGVAL------SKDEDYLVVCE  236 (239)
Q Consensus       175 ~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~----------~~~~~~~~~l~~pnGia~------s~dg~~lyvad  236 (239)
                      .|-.-                 ..+|.+||.+.          ..+..-++.-+.|--+.-      .+||++|++.+
T Consensus       390 tslf~-----------------dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pgh~~~~~g~t~~~dgk~l~~~n  450 (635)
T PRK02888        390 TTLFL-----------------DSQIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQPGHNHASMGETKEADGKWLVSLN  450 (635)
T ss_pred             EeEee-----------------cceeEEEehHHHHHHhccccCCcceecccCCCccceeeecCCCcCCCCCCEEEEcc
Confidence            88533                 23566666542          112222333445544444      78999887654

>PTZ00421 coronin; Provisional

Probab=97.42  E-value=0.026  Score=52.60  Aligned_cols=134  Identities=19%  Similarity=0.182  Sum_probs=81.6

Q ss_pred             CcceEEEcC-CCC-EEEEeCCCeEEEEec-CCc--------EEEeeeccCcCccCeEEcCCC-CEEEEeCCCCeEEEc--
Q 026389           78 GPEDVCVDR-NGV-LYTATRDGWIKRLHK-NGT--------WENWKLIGGDTLLGITTTQEN-EILVCDADKGLLKVT--  143 (239)
Q Consensus        78 gPe~ia~d~-~G~-ly~~~~~g~I~~~~~-~G~--------~~~~~~~~~~p~~Gl~~d~~G-~L~v~d~~~g~~~v~--  143 (239)
                      .-.+++|++ ++. |++++.|+.|..|+. ++.        ...+........ .+++.+++ +++++-...+.+++.  
T Consensus        77 ~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~-~l~f~P~~~~iLaSgs~DgtVrIWDl  155 (493)
T PTZ00421         77 PIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVG-IVSFHPSAMNVLASAGADMVVNVWDV  155 (493)
T ss_pred             CEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEE-EEEeCcCCCCEEEEEeCCCEEEEEEC
Confidence            345789998 665 557779999999884 221        122222223445 78898875 677766667777775  


Q ss_pred             cCC--ceEEecccCCccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecCCCC--C
Q 026389          144 EEG--VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLF--F  219 (239)
Q Consensus       144 ~~g--~~~l~~~~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~~l~--~  219 (239)
                      ..+  ...+... .    ...+.+++.++|.+.++.+.                 .|.|..||+.+++...-..+..  .
T Consensus       156 ~tg~~~~~l~~h-~----~~V~sla~spdG~lLatgs~-----------------Dg~IrIwD~rsg~~v~tl~~H~~~~  213 (493)
T PTZ00421        156 ERGKAVEVIKCH-S----DQITSLEWNLDGSLLCTTSK-----------------DKKLNIIDPRDGTIVSSVEAHASAK  213 (493)
T ss_pred             CCCeEEEEEcCC-C----CceEEEEEECCCCEEEEecC-----------------CCEEEEEECCCCcEEEEEecCCCCc
Confidence            345  2233211 1    23678999999988877654                 5788889987766433222211  1


Q ss_pred             cceEEEcCCCCEEEE
Q 026389          220 ANGVALSKDEDYLVV  234 (239)
Q Consensus       220 pnGia~s~dg~~lyv  234 (239)
                      ...+.+.+++..++.
T Consensus       214 ~~~~~w~~~~~~ivt  228 (493)
T PTZ00421        214 SQRCLWAKRKDLIIT  228 (493)
T ss_pred             ceEEEEcCCCCeEEE
Confidence            234556666655543

>PRK00178 tolB translocation protein TolB; Provisional

Probab=97.38  E-value=0.01  Score=53.87  Aligned_cols=117  Identities=14%  Similarity=0.130  Sum_probs=69.4

Q ss_pred             eEEEEecCCc-EEEeeeccCcCccCeEEcCCCC-E-EEEeCC--CCeEEEc-cCC-ceEEecccCCccccccccEEEcCC
Q 026389           98 WIKRLHKNGT-WENWKLIGGDTLLGITTTQENE-I-LVCDAD--KGLLKVT-EEG-VTVLASHVNGSRINLADDLIAATD  170 (239)
Q Consensus        98 ~I~~~~~~G~-~~~~~~~~~~p~~Gl~~d~~G~-L-~v~d~~--~g~~~v~-~~g-~~~l~~~~~g~~~~~pn~l~vd~d  170 (239)
                      +|+.+|.+|. .+.+........ ..++.+||+ | |+....  ..++..+ ..| .+.+.. ..+    ......+.||
T Consensus       180 ~l~~~d~~g~~~~~l~~~~~~~~-~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~-~~g----~~~~~~~SpD  253 (430)
T PRK00178        180 TLQRSDYDGARAVTLLQSREPIL-SPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITN-FEG----LNGAPAWSPD  253 (430)
T ss_pred             EEEEECCCCCCceEEecCCCcee-eeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccC-CCC----CcCCeEECCC
Confidence            3556666664 222222222234 678889995 4 444332  2355556 455 444432 222    1235789999


Q ss_pred             C-CEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecCCCCCcceEEEcCCCCEEEEE
Q 026389          171 G-SIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVC  235 (239)
Q Consensus       171 G-~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~~l~~pnGia~s~dg~~lyva  235 (239)
                      | .|+|+....               +...||++|.++++.+.+...-.......|+|||+.|+++
T Consensus       254 G~~la~~~~~~---------------g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~~spDg~~i~f~  304 (430)
T PRK00178        254 GSKLAFVLSKD---------------GNPEIYVMDLASRQLSRVTNHPAIDTEPFWGKDGRTLYFT  304 (430)
T ss_pred             CCEEEEEEccC---------------CCceEEEEECCCCCeEEcccCCCCcCCeEECCCCCEEEEE
Confidence            9 577665331               1347999999988887765544445567899999987654

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=97.36  E-value=0.007  Score=54.46  Aligned_cols=100  Identities=16%  Similarity=0.230  Sum_probs=66.5

Q ss_pred             CCCEEEEeCCCeEEEEec-CCcEEEeeeccCcCccCeEEcCCCCEEEEeCCCCeEEEc-cCCceEEec-ccCCccccccc
Q 026389           87 NGVLYTATRDGWIKRLHK-NGTWENWKLIGGDTLLGITTTQENEILVCDADKGLLKVT-EEGVTVLAS-HVNGSRINLAD  163 (239)
Q Consensus        87 ~G~ly~~~~~g~I~~~~~-~G~~~~~~~~~~~p~~Gl~~d~~G~L~v~d~~~g~~~v~-~~g~~~l~~-~~~g~~~~~pn  163 (239)
                      +|.+|+++.+|.++.+|. +|+. .|....+.+. .+++ .+|+||+++....++.++ .+|..+... ...+..   ..
T Consensus       256 ~~~vy~~~~~g~l~ald~~tG~~-~W~~~~~~~~-~~~~-~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~---~~  329 (394)
T PRK11138        256 GGVVYALAYNGNLVALDLRSGQI-VWKREYGSVN-DFAV-DGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRL---LT  329 (394)
T ss_pred             CCEEEEEEcCCeEEEEECCCCCE-EEeecCCCcc-CcEE-ECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCc---cc
Confidence            678999888999999996 5653 4544444444 5555 367999999878888888 567333322 112211   12


Q ss_pred             cEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEE
Q 026389          164 DLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETS  211 (239)
Q Consensus       164 ~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~  211 (239)
                      ..++ .+|+||+.+..                  |.|+.+|+++|++.
T Consensus       330 sp~v-~~g~l~v~~~~------------------G~l~~ld~~tG~~~  358 (394)
T PRK11138        330 APVL-YNGYLVVGDSE------------------GYLHWINREDGRFV  358 (394)
T ss_pred             CCEE-ECCEEEEEeCC------------------CEEEEEECCCCCEE
Confidence            2233 36899998754                  88999999888764

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=97.35  E-value=0.001  Score=56.27  Aligned_cols=65  Identities=11%  Similarity=0.155  Sum_probs=41.0

Q ss_pred             CcCCcceEEEcC-CCCEEEEe-CCCeEEEEecCCcEEEeeec----------cCcCccCeEEcCCCCEEEEeCCCCeE
Q 026389           75 ILNGPEDVCVDR-NGVLYTAT-RDGWIKRLHKNGTWENWKLI----------GGDTLLGITTTQENEILVCDADKGLL  140 (239)
Q Consensus        75 ~~~gPe~ia~d~-~G~ly~~~-~~g~I~~~~~~G~~~~~~~~----------~~~p~~Gl~~d~~G~L~v~d~~~g~~  140 (239)
                      .+..|.++++++ .|++|+-+ ...+|+.+|.+|++......          ...|- ||++|++|+|||+...+-.+
T Consensus       169 ~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~~G~~~~~~~L~~g~~gl~~~~~QpE-GIa~d~~G~LYIvsEpNlfy  245 (248)
T PF06977_consen  169 FVRDLSGLSYDPRTGHLLILSDESRLLLELDRQGRVVSSLSLDRGFHGLSKDIPQPE-GIAFDPDGNLYIVSEPNLFY  245 (248)
T ss_dssp             -SS---EEEEETTTTEEEEEETTTTEEEEE-TT--EEEEEE-STTGGG-SS---SEE-EEEE-TT--EEEEETTTEEE
T ss_pred             eeccccceEEcCCCCeEEEEECCCCeEEEECCCCCEEEEEEeCCcccCcccccCCcc-EEEECCCCCEEEEcCCceEE
Confidence            366799999998 78999655 88899999999986544322          13689 99999999999998754333

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=97.33  E-value=0.011  Score=54.33  Aligned_cols=133  Identities=20%  Similarity=0.261  Sum_probs=88.4

Q ss_pred             eEEEcCCCCEEEEe-CCCeEEEEecCC-c--E-EEeeeccCcCccCeEEcCCCCEEEEeCCCCeEEEc--c-CC--ceEE
Q 026389           81 DVCVDRNGVLYTAT-RDGWIKRLHKNG-T--W-ENWKLIGGDTLLGITTTQENEILVCDADKGLLKVT--E-EG--VTVL  150 (239)
Q Consensus        81 ~ia~d~~G~ly~~~-~~g~I~~~~~~G-~--~-~~~~~~~~~p~~Gl~~d~~G~L~v~d~~~g~~~v~--~-~g--~~~l  150 (239)
                      .+.+.++|+..+.. .++.|..++..+ +  . ........... +++|.++|+.+++-+....+++.  + ++  .+++
T Consensus       164 ~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~-~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l  242 (456)
T KOG0266|consen  164 CVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVS-DVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTL  242 (456)
T ss_pred             EEEEcCCCCeEEEccCCCcEEEeecccccchhhcccccccccee-eeEECCCCcEEEEecCCceEEEeeccCCCeEEEEe
Confidence            45667788776444 666666665422 2  1 11111122344 78999999988887777888775  2 33  4444


Q ss_pred             ecccCCccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecC-CCCCcceEEEcCCC
Q 026389          151 ASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLD-SLFFANGVALSKDE  229 (239)
Q Consensus       151 ~~~~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~-~l~~pnGia~s~dg  229 (239)
                      ....     .+.+.+++.++|+++++-+.                 .+.|..||..+++....+. .-..-++++|++||
T Consensus       243 ~gH~-----~~v~~~~f~p~g~~i~Sgs~-----------------D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~  300 (456)
T KOG0266|consen  243 KGHS-----TYVTSVAFSPDGNLLVSGSD-----------------DGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDG  300 (456)
T ss_pred             cCCC-----CceEEEEecCCCCEEEEecC-----------------CCcEEEEeccCCeEEEeeeccCCceEEEEECCCC
Confidence            3221     34689999999988888765                 5788889998877655544 34466899999999


Q ss_pred             CEEEEEe
Q 026389          230 DYLVVCE  236 (239)
Q Consensus       230 ~~lyvad  236 (239)
                      +.|+.+.
T Consensus       301 ~~l~s~s  307 (456)
T KOG0266|consen  301 NLLVSAS  307 (456)
T ss_pred             CEEEEcC
Confidence            9887663

>PRK01029 tolB translocation protein TolB; Provisional

Probab=97.32  E-value=0.034  Score=50.77  Aligned_cols=135  Identities=15%  Similarity=0.049  Sum_probs=77.5

Q ss_pred             eEEEcCCCC-EEEEe-CCC--eEEE--EecC----CcEEEeeec-cCcCccCeEEcCCCC-EEE-EeCCC--CeEEEcc-
Q 026389           81 DVCVDRNGV-LYTAT-RDG--WIKR--LHKN----GTWENWKLI-GGDTLLGITTTQENE-ILV-CDADK--GLLKVTE-  144 (239)
Q Consensus        81 ~ia~d~~G~-ly~~~-~~g--~I~~--~~~~----G~~~~~~~~-~~~p~~Gl~~d~~G~-L~v-~d~~~--g~~~v~~-  144 (239)
                      ..+|+|||+ |.+.. ..|  .|+.  ++.+    |+.+.+... .+... ..++.+||+ |+. ++...  .++.++. 
T Consensus       235 ~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~-~p~wSPDG~~Laf~s~~~g~~~ly~~~~~  313 (428)
T PRK01029        235 MPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQG-NPSFSPDGTRLVFVSNKDGRPRIYIMQID  313 (428)
T ss_pred             ceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcC-CeEECCCCCEEEEEECCCCCceEEEEECc
Confidence            348889984 44433 333  4444  3422    233333222 12334 678899996 444 44322  3444442 


Q ss_pred             -CC--ceEEecccCCccccccccEEEcCCCC-EEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecCCCCCc
Q 026389          145 -EG--VTVLASHVNGSRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFA  220 (239)
Q Consensus       145 -~g--~~~l~~~~~g~~~~~pn~l~vd~dG~-iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~~l~~p  220 (239)
                       .+  .+.+... .    .......+.|||+ |+|+....               +..+|+.||.++++.+.+..+....
T Consensus       314 ~~g~~~~~lt~~-~----~~~~~p~wSPDG~~Laf~~~~~---------------g~~~I~v~dl~~g~~~~Lt~~~~~~  373 (428)
T PRK01029        314 PEGQSPRLLTKK-Y----RNSSCPAWSPDGKKIAFCSVIK---------------GVRQICVYDLATGRDYQLTTSPENK  373 (428)
T ss_pred             ccccceEEeccC-C----CCccceeECCCCCEEEEEEcCC---------------CCcEEEEEECCCCCeEEccCCCCCc
Confidence             22  3333221 1    1234678999994 66665331               1357999999999888776554456


Q ss_pred             ceEEEcCCCCEEEEEe
Q 026389          221 NGVALSKDEDYLVVCE  236 (239)
Q Consensus       221 nGia~s~dg~~lyvad  236 (239)
                      ...+++|||+.|+++-
T Consensus       374 ~~p~wSpDG~~L~f~~  389 (428)
T PRK01029        374 ESPSWAIDSLHLVYSA  389 (428)
T ss_pred             cceEECCCCCEEEEEE
Confidence            7789999999887653

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.30  E-value=0.003  Score=54.07  Aligned_cols=103  Identities=22%  Similarity=0.279  Sum_probs=61.7

Q ss_pred             CCcceEEEcC-CCCEEEEeCC--CeEEEEecC--C-cEEEee------eccCcCccCeEEc-CCCCEEEE-eCCCCeEEE
Q 026389           77 NGPEDVCVDR-NGVLYTATRD--GWIKRLHKN--G-TWENWK------LIGGDTLLGITTT-QENEILVC-DADKGLLKV  142 (239)
Q Consensus        77 ~gPe~ia~d~-~G~ly~~~~~--g~I~~~~~~--G-~~~~~~------~~~~~p~~Gl~~d-~~G~L~v~-d~~~g~~~v  142 (239)
                      .|=||+|||+ ++++|+.=..  -+|+.++..  . ......      +..-.-.+|+.+| ..|.|+|. +..+.++.+
T Consensus       181 ~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Ev  260 (316)
T COG3204         181 KGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEV  260 (316)
T ss_pred             cCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccceecCCCCcEEEEecCCceEEEE
Confidence            3678999998 6688887633  467776521  1 010000      0001122388888 34567665 555667788


Q ss_pred             ccCC--ceEEe--cccCC--ccccccccEEEcCCCCEEEEeCC
Q 026389          143 TEEG--VTVLA--SHVNG--SRINLADDLIAATDGSIYFSVAS  179 (239)
Q Consensus       143 ~~~g--~~~l~--~~~~g--~~~~~pn~l~vd~dG~iy~td~~  179 (239)
                      +.+|  .+.+.  ....|  ..+..+.|++.|.+|+||+....
T Consensus       261 d~~G~~~~~lsL~~g~~gL~~dipqaEGiamDd~g~lYIvSEP  303 (316)
T COG3204         261 DLSGEVIELLSLTKGNHGLSSDIPQAEGIAMDDDGNLYIVSEP  303 (316)
T ss_pred             ecCCCeeeeEEeccCCCCCcccCCCcceeEECCCCCEEEEecC
Confidence            8766  33332  22222  23457899999999999998755

>PRK04043 tolB translocation protein TolB; Provisional

Probab=97.30  E-value=0.017  Score=52.73  Aligned_cols=118  Identities=14%  Similarity=0.107  Sum_probs=72.3

Q ss_pred             CeEEEEecCCcE-EEeeeccCcCccCeEEcCCCC--EEEEeCC---CCeEEEc-cCC-ceEEecccCCccccccccEEEc
Q 026389           97 GWIKRLHKNGTW-ENWKLIGGDTLLGITTTQENE--ILVCDAD---KGLLKVT-EEG-VTVLASHVNGSRINLADDLIAA  168 (239)
Q Consensus        97 g~I~~~~~~G~~-~~~~~~~~~p~~Gl~~d~~G~--L~v~d~~---~g~~~v~-~~g-~~~l~~~~~g~~~~~pn~l~vd  168 (239)
                      .+|+..|.||.- +.+.. .+.-. ...+.+||+  +|++...   ..++.++ ..| .+.+.. ..|.    .....+.
T Consensus       169 ~~l~~~d~dg~~~~~~~~-~~~~~-~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~----~~~~~~S  241 (419)
T PRK04043        169 SNIVLADYTLTYQKVIVK-GGLNI-FPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGM----LVVSDVS  241 (419)
T ss_pred             ceEEEECCCCCceeEEcc-CCCeE-eEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCc----EEeeEEC
Confidence            477788888753 33333 23333 677889995  5554332   2356666 466 555543 3331    1235689


Q ss_pred             CCC-CEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecCCCCCcceEEEcCCCCEEEEEe
Q 026389          169 TDG-SIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCE  236 (239)
Q Consensus       169 ~dG-~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~~l~~pnGia~s~dg~~lyvad  236 (239)
                      ||| .+.++....               ++..||.+|.++++.+.+...-..-....|+|||+.||++.
T Consensus       242 PDG~~la~~~~~~---------------g~~~Iy~~dl~~g~~~~LT~~~~~d~~p~~SPDG~~I~F~S  295 (419)
T PRK04043        242 KDGSKLLLTMAPK---------------GQPDIYLYDTNTKTLTQITNYPGIDVNGNFVEDDKRIVFVS  295 (419)
T ss_pred             CCCCEEEEEEccC---------------CCcEEEEEECCCCcEEEcccCCCccCccEECCCCCEEEEEE
Confidence            999 677776431               24689999998888777654322223457999999887764

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=97.30  E-value=0.011  Score=49.48  Aligned_cols=135  Identities=18%  Similarity=0.206  Sum_probs=78.6

Q ss_pred             ceEEEcCCCC-EEEEeCCCeEEEEecCC-cEEEeeeccCcCccCeEEcC-CCCEEEEeCCCCeEEEc--cCC-ceEEecc
Q 026389           80 EDVCVDRNGV-LYTATRDGWIKRLHKNG-TWENWKLIGGDTLLGITTTQ-ENEILVCDADKGLLKVT--EEG-VTVLASH  153 (239)
Q Consensus        80 e~ia~d~~G~-ly~~~~~g~I~~~~~~G-~~~~~~~~~~~p~~Gl~~d~-~G~L~v~d~~~g~~~v~--~~g-~~~l~~~  153 (239)
                      ..|.|..+|+ +|+++.||.+..||--. +..........-+ .+...+ ++.|+++|...++..-|  .+- ...+..+
T Consensus        87 taVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~spVn-~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe  165 (311)
T KOG0315|consen   87 TAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQHNSPVN-TVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPE  165 (311)
T ss_pred             EEEEEeecCeEEEecCCCceEEEEeccCcccchhccCCCCcc-eEEecCCcceEEeecCCCcEEEEEccCCccccccCCC
Confidence            4567777775 67888999888887421 1111111122233 566664 46899999754444444  233 4444433


Q ss_pred             cCCccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEE-Eec--CCC----CCcceEEEc
Q 026389          154 VNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETS-ILL--DSL----FFANGVALS  226 (239)
Q Consensus       154 ~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~-~~~--~~l----~~pnGia~s  226 (239)
                      . +   .+...++|++||...++-.+                 .|+.|.++.-+++.. .+.  ..+    .+.--+-+|
T Consensus       166 ~-~---~~i~sl~v~~dgsml~a~nn-----------------kG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lS  224 (311)
T KOG0315|consen  166 D-D---TSIQSLTVMPDGSMLAAANN-----------------KGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLS  224 (311)
T ss_pred             C-C---cceeeEEEcCCCcEEEEecC-----------------CccEEEEEccCCCccccceEhhheecccceEEEEEEC
Confidence            2 2   35678999999987766544                 478888876543321 111  111    233456789


Q ss_pred             CCCCEEEEEe
Q 026389          227 KDEDYLVVCE  236 (239)
Q Consensus       227 ~dg~~lyvad  236 (239)
                      ||+++|..+.
T Consensus       225 Pd~k~lat~s  234 (311)
T KOG0315|consen  225 PDVKYLATCS  234 (311)
T ss_pred             CCCcEEEeec
Confidence            9999776554

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=97.29  E-value=0.011  Score=52.68  Aligned_cols=61  Identities=21%  Similarity=0.433  Sum_probs=40.8

Q ss_pred             EEcCCCCEEEEeCCCeEEEEec-CCcEEEeee-ccCcCccCeEEcCCCCEEEEeCCCCeEEEc-cCC
Q 026389           83 CVDRNGVLYTATRDGWIKRLHK-NGTWENWKL-IGGDTLLGITTTQENEILVCDADKGLLKVT-EEG  146 (239)
Q Consensus        83 a~d~~G~ly~~~~~g~I~~~~~-~G~~~~~~~-~~~~p~~Gl~~d~~G~L~v~d~~~g~~~v~-~~g  146 (239)
                      +++ ++.+|+++.+|.|+.+|. +|+.. |.. .......+.+++ ++++|+......++.++ .+|
T Consensus        62 ~v~-~~~v~v~~~~g~v~a~d~~tG~~~-W~~~~~~~~~~~p~v~-~~~v~v~~~~g~l~ald~~tG  125 (377)
T TIGR03300        62 AVA-GGKVYAADADGTVVALDAETGKRL-WRVDLDERLSGGVGAD-GGLVFVGTEKGEVIALDAEDG  125 (377)
T ss_pred             EEE-CCEEEEECCCCeEEEEEccCCcEe-eeecCCCCcccceEEc-CCEEEEEcCCCEEEEEECCCC
Confidence            444 679999999999999995 67642 322 222222144553 67899988766778888 477

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins

Probab=97.25  E-value=0.00057  Score=37.59  Aligned_cols=26  Identities=31%  Similarity=0.540  Sum_probs=21.6

Q ss_pred             CCcceEEEcCCCCEEEEe-CCCeEEEE
Q 026389           77 NGPEDVCVDRNGVLYTAT-RDGWIKRL  102 (239)
Q Consensus        77 ~gPe~ia~d~~G~ly~~~-~~g~I~~~  102 (239)
                      ..|.||+++++|+||+++ .+++|.++
T Consensus         2 ~~P~gvav~~~g~i~VaD~~n~rV~vf   28 (28)
T PF01436_consen    2 NYPHGVAVDSDGNIYVADSGNHRVQVF   28 (28)
T ss_dssp             SSEEEEEEETTSEEEEEECCCTEEEEE
T ss_pred             cCCcEEEEeCCCCEEEEECCCCEEEEC
Confidence            579999999999999888 67777764

For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=97.19  E-value=0.017  Score=52.85  Aligned_cols=131  Identities=18%  Similarity=0.141  Sum_probs=82.2

Q ss_pred             CCcceEEEcCCCCEEEEeCCCeEEEEecCCcEEEeeeccCcCccCeEEcCCCCEEEEeCCCCeEEEc-cCC---ceEEe-
Q 026389           77 NGPEDVCVDRNGVLYTATRDGWIKRLHKNGTWENWKLIGGDTLLGITTTQENEILVCDADKGLLKVT-EEG---VTVLA-  151 (239)
Q Consensus        77 ~gPe~ia~d~~G~ly~~~~~g~I~~~~~~G~~~~~~~~~~~p~~Gl~~d~~G~L~v~d~~~g~~~v~-~~g---~~~l~-  151 (239)
                      ..|.++++.++|.+.+..-...|..+...+.... .+..-.+- ++++.+++...+.....+-+++. -.|   .+... 
T Consensus       406 ~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~-~~~~y~~s-~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~  483 (603)
T KOG0318|consen  406 SQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSS-IPIGYESS-AVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKL  483 (603)
T ss_pred             CCceeEEEcCCCCEEEEEecCcEEEEecCCccee-eccccccc-eEEEcCCCCEEEEecccceEEEEEecCCcccceeee
Confidence            5788999999875554333444555542233322 34556677 99999999766655555666665 233   22211 


Q ss_pred             cccCCccccccccEEEcCCCC-EEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecCCC--CCcceEEEcCC
Q 026389          152 SHVNGSRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSL--FFANGVALSKD  228 (239)
Q Consensus       152 ~~~~g~~~~~pn~l~vd~dG~-iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~~l--~~pnGia~s~d  228 (239)
                      ....    .-+..+++.|||. +-.+|.+                  +++..||..+++...-.-.+  ...|.|+++|+
T Consensus       484 ~~h~----a~iT~vaySpd~~yla~~Da~------------------rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~  541 (603)
T KOG0318|consen  484 LEHR----AAITDVAYSPDGAYLAAGDAS------------------RKVVLYDVASREVKTNRWAFHTAKINCVAWSPN  541 (603)
T ss_pred             eccc----CCceEEEECCCCcEEEEeccC------------------CcEEEEEcccCceecceeeeeeeeEEEEEeCCC
Confidence            1111    2378999999995 5556654                  78899999887763322222  35699999999


Q ss_pred             CCE
Q 026389          229 EDY  231 (239)
Q Consensus       229 g~~  231 (239)
                      ...
T Consensus       542 n~~  544 (603)
T KOG0318|consen  542 NKL  544 (603)
T ss_pred             ceE
Confidence            864

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=97.18  E-value=0.028  Score=51.33  Aligned_cols=133  Identities=14%  Similarity=0.110  Sum_probs=83.5

Q ss_pred             CcceEEEcCCCCEEEEeCCCeEEEEecCCcEEEeeeccC-cCccCeEEcCCCCEEEEeCCCCeEEEccCC-ceEEecccC
Q 026389           78 GPEDVCVDRNGVLYTATRDGWIKRLHKNGTWENWKLIGG-DTLLGITTTQENEILVCDADKGLLKVTEEG-VTVLASHVN  155 (239)
Q Consensus        78 gPe~ia~d~~G~ly~~~~~g~I~~~~~~G~~~~~~~~~~-~p~~Gl~~d~~G~L~v~d~~~g~~~v~~~g-~~~l~~~~~  155 (239)
                      .++-|+-. .+.||++...+.|++=+.++.........+ .-. |++..++.++|++-...+.+++..+. .+.- ..++
T Consensus       331 ~iRtv~e~-~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delw-gla~hps~~q~~T~gqdk~v~lW~~~k~~wt-~~~~  407 (626)
T KOG2106|consen  331 PIRTVAEG-KGDILVGTTRNFILQGTLENGFTLTVQGHGDELW-GLATHPSKNQLLTCGQDKHVRLWNDHKLEWT-KIIE  407 (626)
T ss_pred             CeeEEecC-CCcEEEeeccceEEEeeecCCceEEEEeccccee-eEEcCCChhheeeccCcceEEEccCCceeEE-EEec
Confidence            34444433 345999998889988655443322222223 445 99999998888887777788776432 2221 1111


Q ss_pred             CccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecCCCCCcceEEEcCCCCEEEEE
Q 026389          156 GSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVC  235 (239)
Q Consensus       156 g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~~l~~pnGia~s~dg~~lyva  235 (239)
                      .    ...-++++|.|.+.+...                  .|+.+.+|..+..+..+...-..-+-|+++|||.+|-|.
T Consensus       408 d----~~~~~~fhpsg~va~Gt~------------------~G~w~V~d~e~~~lv~~~~d~~~ls~v~ysp~G~~lAvg  465 (626)
T KOG2106|consen  408 D----PAECADFHPSGVVAVGTA------------------TGRWFVLDTETQDLVTIHTDNEQLSVVRYSPDGAFLAVG  465 (626)
T ss_pred             C----ceeEeeccCcceEEEeec------------------cceEEEEecccceeEEEEecCCceEEEEEcCCCCEEEEe
Confidence            1    134567888885555543                  488999998876666665554455778889988876554

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=97.12  E-value=0.003  Score=56.12  Aligned_cols=135  Identities=15%  Similarity=0.087  Sum_probs=90.5

Q ss_pred             CCcceEEEcCC--C-CEEEEeCCCeEEEEecCCcE--EEeeeccCcCccCeEEcCCCCEEEEeCCCCeEEEc--cCCceE
Q 026389           77 NGPEDVCVDRN--G-VLYTATRDGWIKRLHKNGTW--ENWKLIGGDTLLGITTTQENEILVCDADKGLLKVT--EEGVTV  149 (239)
Q Consensus        77 ~gPe~ia~d~~--G-~ly~~~~~g~I~~~~~~G~~--~~~~~~~~~p~~Gl~~d~~G~L~v~d~~~g~~~v~--~~g~~~  149 (239)
                      ..-.++.|.|.  + .+.+++.||.+.-|+.+++.  ..+.....+-- -++|.|+|+.+.+..+....++.  ..+.+.
T Consensus       218 ~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~RVs-~VafHPsG~~L~TasfD~tWRlWD~~tk~El  296 (459)
T KOG0272|consen  218 SRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLEGHLARVS-RVAFHPSGKFLGTASFDSTWRLWDLETKSEL  296 (459)
T ss_pred             cceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhhhcchhhhe-eeeecCCCceeeecccccchhhcccccchhh
Confidence            34556777774  3 67788899988888776642  23333344555 78999999999988887777775  344444


Q ss_pred             EecccCCccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecCC-CCCcceEEEcCC
Q 026389          150 LASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDS-LFFANGVALSKD  228 (239)
Q Consensus       150 l~~~~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~~-l~~pnGia~s~d  228 (239)
                      +..  +|.. ....++++.+||.+..|..-.               ..|||  +|..+|.-..++.+ +....+|+|+|+
T Consensus       297 L~Q--EGHs-~~v~~iaf~~DGSL~~tGGlD---------------~~~Rv--WDlRtgr~im~L~gH~k~I~~V~fsPN  356 (459)
T KOG0272|consen  297 LLQ--EGHS-KGVFSIAFQPDGSLAATGGLD---------------SLGRV--WDLRTGRCIMFLAGHIKEILSVAFSPN  356 (459)
T ss_pred             Hhh--cccc-cccceeEecCCCceeeccCcc---------------chhhe--eecccCcEEEEecccccceeeEeECCC
Confidence            432  2221 246799999999999886542               13666  56666666555544 556688999999


Q ss_pred             CCEE
Q 026389          229 EDYL  232 (239)
Q Consensus       229 g~~l  232 (239)
                      |-.|
T Consensus       357 Gy~l  360 (459)
T KOG0272|consen  357 GYHL  360 (459)
T ss_pred             ceEE
Confidence            8654

>PF00058 Ldl_recept_b: Low-density lipoprotein receptor repeat class B; InterPro: IPR000033 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells

Probab=97.11  E-value=0.0022  Score=38.83  Aligned_cols=40  Identities=20%  Similarity=0.304  Sum_probs=31.8

Q ss_pred             CCEEEEeCCCCcCcccccccceeecCCc-eEEEEeCCCCeEEEe-cCCCCCcceEEEcC
Q 026389          171 GSIYFSVASTKFGLHNWGLDLLEAKPHG-KLLKYDPSLNETSIL-LDSLFFANGVALSK  227 (239)
Q Consensus       171 G~iy~td~~~~~~~~~~~~~~~e~~~~g-~v~~~d~~~~~~~~~-~~~l~~pnGia~s~  227 (239)
                      |+||+||..                 .. ++.+-+.++...+++ .+++..|+|||+++
T Consensus         1 ~~iYWtD~~-----------------~~~~I~~a~~dGs~~~~vi~~~l~~P~giaVD~   42 (42)
T PF00058_consen    1 GKIYWTDWS-----------------QDPSIERANLDGSNRRTVISDDLQHPEGIAVDW   42 (42)
T ss_dssp             TEEEEEETT-----------------TTEEEEEEETTSTSEEEEEESSTSSEEEEEEET
T ss_pred             CEEEEEECC-----------------CCcEEEEEECCCCCeEEEEECCCCCcCEEEECC
Confidence            579999987                 34 788888887765555 47899999999874

The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR classB (YWTD) repeat, the structure of which has been solved []. The six YWTD repeats together fold into a six-bladed beta-propeller. Each blade of the propeller consists of four antiparallel beta-strands; the innermost strand of each blade is labeled 1 and the outermost strand, 4. The sequence repeats are offset with respect to the blades of the propeller, such that any given 40-residue YWTD repeat spans strands 24 of one propeller blade and strand 1 of the subsequent blade. This offset ensures circularization of the propeller because the last strand of the final sequence repeat acts as an innermost strand 1 of the blade that harbors strands 24 from the first sequence repeat. The repeat is found in a variety of proteins that include, vitellogenin receptor from Drosophila melanogaster, low-density lipoprotein (LDL) receptor [], preproepidermal growth factor, and nidogen (entactin).; PDB: 3S2K_A 3S8Z_A 3S8V_B 4A0P_A 3SOB_B 3S94_B 4DG6_A 3SOV_A 3SOQ_A 1NPE_A ....

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=97.11  E-value=0.062  Score=47.26  Aligned_cols=157  Identities=17%  Similarity=0.219  Sum_probs=87.6

Q ss_pred             cCCcceEEEcC-CCCEEEEeCCCe------EEEEecCC------cEE-----EeeeccC--------cCccCeEEcCCCC
Q 026389           76 LNGPEDVCVDR-NGVLYTATRDGW------IKRLHKNG------TWE-----NWKLIGG--------DTLLGITTTQENE  129 (239)
Q Consensus        76 ~~gPe~ia~d~-~G~ly~~~~~g~------I~~~~~~G------~~~-----~~~~~~~--------~p~~Gl~~d~~G~  129 (239)
                      +.+=.||++++ +|++|+-+.+|.      +++++.+.      .++     .+....+        .+- ||++.++|.
T Consensus        19 ~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~E-gi~~~~~g~   97 (326)
T PF13449_consen   19 FGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPE-GIAVPPDGS   97 (326)
T ss_pred             cCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChh-HeEEecCCC
Confidence            55678899995 677775555555      66655321      111     1111222        456 899988999


Q ss_pred             EEEEeCCC-------CeEEEccCC--ceEE-e-ccc-------CCc-cccccccEEEcCCCC-EEEEeCCCCcCcccccc
Q 026389          130 ILVCDADK-------GLLKVTEEG--VTVL-A-SHV-------NGS-RINLADDLIAATDGS-IYFSVASTKFGLHNWGL  189 (239)
Q Consensus       130 L~v~d~~~-------g~~~v~~~g--~~~l-~-~~~-------~g~-~~~~pn~l~vd~dG~-iy~td~~~~~~~~~~~~  189 (239)
                      +||++.+.       .+++++.+|  .+.+ . ..+       .+. .=....+|++.+||+ +|+.-.+...+-..  .
T Consensus        98 ~~is~E~~~~~~~~p~I~~~~~~G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~--~  175 (326)
T PF13449_consen   98 FWISSEGGRTGGIPPRIRRFDLDGRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGP--R  175 (326)
T ss_pred             EEEEeCCccCCCCCCEEEEECCCCcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCc--c
Confidence            99998776       455666667  3333 1 111       111 123467999999997 88765542111100  0


Q ss_pred             cceeecCCceEEEEeCCC-C----eEEEecC------CCCCcceEEEcCCCCEEEEEe
Q 026389          190 DLLEAKPHGKLLKYDPSL-N----ETSILLD------SLFFANGVALSKDEDYLVVCE  236 (239)
Q Consensus       190 ~~~e~~~~g~v~~~d~~~-~----~~~~~~~------~l~~pnGia~s~dg~~lyvad  236 (239)
                      .....+..-|+++||+.+ +    +.....+      .-..+..++.-+|++ |+|-|
T Consensus       176 ~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~-lLvLE  232 (326)
T PF13449_consen  176 ANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGR-LLVLE  232 (326)
T ss_pred             cccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCc-EEEEE
Confidence            000111235899999875 2    1222223      234556677777887 55554

>PRK02888 nitrous-oxide reductase; Validated

Probab=97.10  E-value=0.0067  Score=57.27  Aligned_cols=40  Identities=18%  Similarity=0.149  Sum_probs=32.8

Q ss_pred             ceEEEEeCCC-----CeEEEecCCCCCcceEEEcCCCCEEEEEeC
Q 026389          198 GKLLKYDPSL-----NETSILLDSLFFANGVALSKDEDYLVVCET  237 (239)
Q Consensus       198 g~v~~~d~~~-----~~~~~~~~~l~~pnGia~s~dg~~lyvadt  237 (239)
                      ++|-.+|..+     .++...+..-..|.||++||||+++|++.-
T Consensus       296 n~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVank  340 (635)
T PRK02888        296 SKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGK  340 (635)
T ss_pred             CEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCC
Confidence            5788999876     356666667789999999999999999863

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=97.09  E-value=0.048  Score=45.90  Aligned_cols=128  Identities=13%  Similarity=0.106  Sum_probs=76.9

Q ss_pred             CCCEEEEeCCCeEEEEec-CCcEEEeeeccCcCccCeEEcCCCCEEEEeCCCCeEEEccCCceEEecccCCccccccccE
Q 026389           87 NGVLYTATRDGWIKRLHK-NGTWENWKLIGGDTLLGITTTQENEILVCDADKGLLKVTEEGVTVLASHVNGSRINLADDL  165 (239)
Q Consensus        87 ~G~ly~~~~~g~I~~~~~-~G~~~~~~~~~~~p~~Gl~~d~~G~L~v~d~~~g~~~v~~~g~~~l~~~~~g~~~~~pn~l  165 (239)
                      |..|..+..++.|..||. .|+...-......+. .+.+.++|+++....+.++...+.+...+|... + .|- ..+..
T Consensus       155 D~~iLSSadd~tVRLWD~rTgt~v~sL~~~s~Vt-SlEvs~dG~ilTia~gssV~Fwdaksf~~lKs~-k-~P~-nV~SA  230 (334)
T KOG0278|consen  155 DKCILSSADDKTVRLWDHRTGTEVQSLEFNSPVT-SLEVSQDGRILTIAYGSSVKFWDAKSFGLLKSY-K-MPC-NVESA  230 (334)
T ss_pred             CceEEeeccCCceEEEEeccCcEEEEEecCCCCc-ceeeccCCCEEEEecCceeEEeccccccceeec-c-Ccc-ccccc
Confidence            455555557788888884 554333234445566 899999999877665544444444333333221 1 111 12344


Q ss_pred             EEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEec-CCCCCc-ceEEEcCCCCEEEEEe
Q 026389          166 IAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILL-DSLFFA-NGVALSKDEDYLVVCE  236 (239)
Q Consensus       166 ~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~-~~l~~p-nGia~s~dg~~lyvad  236 (239)
                      ...|+-.+|++...                 .+.+|+||-++++-.... .+-..| ..|.|+|||. +|.+-
T Consensus       231 SL~P~k~~fVaGge-----------------d~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE-~yAsG  285 (334)
T KOG0278|consen  231 SLHPKKEFFVAGGE-----------------DFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGE-LYASG  285 (334)
T ss_pred             cccCCCceEEecCc-----------------ceEEEEEeccCCceeeecccCCCCceEEEEECCCCc-eeecc
Confidence            55567677887543                 578999999988654442 333333 6688999997 67553

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=97.08  E-value=0.049  Score=47.19  Aligned_cols=145  Identities=18%  Similarity=0.206  Sum_probs=84.9

Q ss_pred             cCCcceEEEcCCCCEE-EEeCCCeEEEEec-CCcEEEeeeccCcCccCeEEcCCC-C-EEEEeCCCCeEEEc-cCC-ceE
Q 026389           76 LNGPEDVCVDRNGVLY-TATRDGWIKRLHK-NGTWENWKLIGGDTLLGITTTQEN-E-ILVCDADKGLLKVT-EEG-VTV  149 (239)
Q Consensus        76 ~~gPe~ia~d~~G~ly-~~~~~g~I~~~~~-~G~~~~~~~~~~~p~~Gl~~d~~G-~-L~v~d~~~g~~~v~-~~g-~~~  149 (239)
                      +.--.+++|+++|+.. +++.|..|..||. +|....-........ +..+.+.. + .+++-....-+.++ .++ .++
T Consensus        65 ~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rirf~spv~-~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~  143 (405)
T KOG1273|consen   65 VRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIRFDSPVW-GAQWHPRKRNKCVATIMEESPVVIDFSDPKHSV  143 (405)
T ss_pred             ccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEEccCccc-eeeeccccCCeEEEEEecCCcEEEEecCCceee
Confidence            3344679999999876 5568889999984 665321111222333 66665433 3 44444433334444 445 555


Q ss_pred             EecccCCccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEec--CCCCCcceEEEcC
Q 026389          150 LASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILL--DSLFFANGVALSK  227 (239)
Q Consensus       150 l~~~~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~--~~l~~pnGia~s~  227 (239)
                      |....++.--..+.-..+|+.|...++..+                 .|.+..||..+-+...-.  +.......|-++.
T Consensus       144 Lp~d~d~dln~sas~~~fdr~g~yIitGts-----------------KGkllv~~a~t~e~vas~rits~~~IK~I~~s~  206 (405)
T KOG1273|consen  144 LPKDDDGDLNSSASHGVFDRRGKYIITGTS-----------------KGKLLVYDAETLECVASFRITSVQAIKQIIVSR  206 (405)
T ss_pred             ccCCCccccccccccccccCCCCEEEEecC-----------------cceEEEEecchheeeeeeeechheeeeEEEEec
Confidence            554444432223444567888866555544                 589999998765543221  2234556788898


Q ss_pred             CCCEEEEEeCC
Q 026389          228 DEDYLVVCETF  238 (239)
Q Consensus       228 dg~~lyvadt~  238 (239)
                      .|+++.++-+-
T Consensus       207 ~g~~liiNtsD  217 (405)
T KOG1273|consen  207 KGRFLIINTSD  217 (405)
T ss_pred             cCcEEEEecCC
Confidence            99988776553

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=97.08  E-value=0.052  Score=48.78  Aligned_cols=58  Identities=21%  Similarity=0.341  Sum_probs=38.8

Q ss_pred             CCCEEEEeCCCeEEEEec-CCcEEEeeeccC------------cCccCeEEcCCCCEEEEeCCCCeEEEc-cCC
Q 026389           87 NGVLYTATRDGWIKRLHK-NGTWENWKLIGG------------DTLLGITTTQENEILVCDADKGLLKVT-EEG  146 (239)
Q Consensus        87 ~G~ly~~~~~g~I~~~~~-~G~~~~~~~~~~------------~p~~Gl~~d~~G~L~v~d~~~g~~~v~-~~g  146 (239)
                      +|.+|+.+.+|.++.+|. +|+. .|.....            ....++++ .++++|+.+....++.+| .+|
T Consensus        69 ~~~vy~~~~~g~l~ald~~tG~~-~W~~~~~~~~~~~~~~~~~~~~~~~~v-~~~~v~v~~~~g~l~ald~~tG  140 (394)
T PRK11138         69 YNKVYAADRAGLVKALDADTGKE-IWSVDLSEKDGWFSKNKSALLSGGVTV-AGGKVYIGSEKGQVYALNAEDG  140 (394)
T ss_pred             CCEEEEECCCCeEEEEECCCCcE-eeEEcCCCcccccccccccccccccEE-ECCEEEEEcCCCEEEEEECCCC
Confidence            689999999999999996 5763 3332111            11103444 357899988766778888 577

>PRK01029 tolB translocation protein TolB; Provisional

Probab=97.07  E-value=0.058  Score=49.32  Aligned_cols=126  Identities=13%  Similarity=0.077  Sum_probs=73.4

Q ss_pred             eEEEcCCCC-EEEE-eCCC--eEEEEecC--C-cEEEeeeccCcCccCeEEcCCCC-EEEEeCCC---CeEEEc-cCC-c
Q 026389           81 DVCVDRNGV-LYTA-TRDG--WIKRLHKN--G-TWENWKLIGGDTLLGITTTQENE-ILVCDADK---GLLKVT-EEG-V  147 (239)
Q Consensus        81 ~ia~d~~G~-ly~~-~~~g--~I~~~~~~--G-~~~~~~~~~~~p~~Gl~~d~~G~-L~v~d~~~---g~~~v~-~~g-~  147 (239)
                      ..+|+|||+ |++. +.+|  +|+.++.+  + +.+.+........ ...+.+||+ |+++....   .++.++ ..| .
T Consensus       285 ~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~-~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~  363 (428)
T PRK01029        285 NPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSS-CPAWSPDGKKIAFCSVIKGVRQICVYDLATGRD  363 (428)
T ss_pred             CeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCcc-ceeECCCCCEEEEEEcCCCCcEEEEEECCCCCe
Confidence            459999986 5544 4444  68887653  2 2333333333344 678889996 44443322   344556 355 5


Q ss_pred             eEEecccCCccccccccEEEcCCC-CEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecCCCCCcceEEEc
Q 026389          148 TVLASHVNGSRINLADDLIAATDG-SIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALS  226 (239)
Q Consensus       148 ~~l~~~~~g~~~~~pn~l~vd~dG-~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~~l~~pnGia~s  226 (239)
                      +.+... .    .......+.+|| .|+|+....               +...||.+|.++++.+.+..+.......+++
T Consensus       364 ~~Lt~~-~----~~~~~p~wSpDG~~L~f~~~~~---------------g~~~L~~vdl~~g~~~~Lt~~~g~~~~p~Ws  423 (428)
T PRK01029        364 YQLTTS-P----ENKESPSWAIDSLHLVYSAGNS---------------NESELYLISLITKKTRKIVIGSGEKRFPSWG  423 (428)
T ss_pred             EEccCC-C----CCccceEECCCCCEEEEEECCC---------------CCceEEEEECCCCCEEEeecCCCcccCceec
Confidence            555322 1    123567899999 477765431               2468999999888877776443333445565


Q ss_pred             C
Q 026389          227 K  227 (239)
Q Consensus       227 ~  227 (239)
                      |
T Consensus       424 ~  424 (428)
T PRK01029        424 A  424 (428)
T ss_pred             C
Confidence            5

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=97.07  E-value=0.024  Score=48.18  Aligned_cols=133  Identities=15%  Similarity=0.172  Sum_probs=86.7

Q ss_pred             CCcceEEEcCCC-CEEEEeCCCeEEEEecCCc--EEEeeec-cCcCccCeEEcCCC-C-EEEEeCCCCeEEEc-cCCceE
Q 026389           77 NGPEDVCVDRNG-VLYTATRDGWIKRLHKNGT--WENWKLI-GGDTLLGITTTQEN-E-ILVCDADKGLLKVT-EEGVTV  149 (239)
Q Consensus        77 ~gPe~ia~d~~G-~ly~~~~~g~I~~~~~~G~--~~~~~~~-~~~p~~Gl~~d~~G-~-L~v~d~~~g~~~v~-~~g~~~  149 (239)
                      ..--++++++|. .|.+++.|..|..|+.-|.  .+..... ...-. -++|.|+. + ++|.-+..+.+++. .++.++
T Consensus       106 ~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVs-cvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l  184 (315)
T KOG0279|consen  106 KDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVS-CVRFSPNESNPIIVSASWDKTVKVWNLRNCQL  184 (315)
T ss_pred             CceEEEEecCCCceeecCCCcceeeeeeecccEEEEEecCCCcCcEE-EEEEcCCCCCcEEEEccCCceEEEEccCCcch
Confidence            445578898865 5667789999998886443  2222111 23344 67788774 4 45555557888886 344222


Q ss_pred             EecccCCccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecCCCCCcceEEEcCCC
Q 026389          150 LASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDE  229 (239)
Q Consensus       150 l~~~~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~~l~~pnGia~s~dg  229 (239)
                      .. .+.|.. .+.|.++|.|||.+-.+...                 .|.++.+|.+.++--.-.+.....|.++|+|..
T Consensus       185 ~~-~~~gh~-~~v~t~~vSpDGslcasGgk-----------------dg~~~LwdL~~~k~lysl~a~~~v~sl~fspnr  245 (315)
T KOG0279|consen  185 RT-TFIGHS-GYVNTVTVSPDGSLCASGGK-----------------DGEAMLWDLNEGKNLYSLEAFDIVNSLCFSPNR  245 (315)
T ss_pred             hh-cccccc-ccEEEEEECCCCCEEecCCC-----------------CceEEEEEccCCceeEeccCCCeEeeEEecCCc
Confidence            21 222322 46899999999999877433                 588999998766554445667778999999974

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=97.00  E-value=0.071  Score=43.29  Aligned_cols=120  Identities=16%  Similarity=0.123  Sum_probs=69.7

Q ss_pred             CeEEEEecCC-cEEEeee-ccCcCccCeEEcCCCC-EEEEeC-CCCeEEEc-cCCceEEecccCCccccccccEEEcCCC
Q 026389           97 GWIKRLHKNG-TWENWKL-IGGDTLLGITTTQENE-ILVCDA-DKGLLKVT-EEGVTVLASHVNGSRINLADDLIAATDG  171 (239)
Q Consensus        97 g~I~~~~~~G-~~~~~~~-~~~~p~~Gl~~d~~G~-L~v~d~-~~g~~~v~-~~g~~~l~~~~~g~~~~~pn~l~vd~dG  171 (239)
                      ..|++++..+ ....+.- ..+... .+++.|+|+ +.|+.. ....+.+. ..+..+. . +..   ...|.+..+|+|
T Consensus        39 ~~l~~~~~~~~~~~~i~l~~~~~I~-~~~WsP~g~~favi~g~~~~~v~lyd~~~~~i~-~-~~~---~~~n~i~wsP~G  112 (194)
T PF08662_consen   39 FELFYLNEKNIPVESIELKKEGPIH-DVAWSPNGNEFAVIYGSMPAKVTLYDVKGKKIF-S-FGT---QPRNTISWSPDG  112 (194)
T ss_pred             EEEEEEecCCCccceeeccCCCceE-EEEECcCCCEEEEEEccCCcccEEEcCcccEeE-e-ecC---CCceEEEECCCC
Confidence            3566675433 2333222 223456 899999995 445532 22344443 3441111 1 111   245889999999


Q ss_pred             CEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecCCCCCcceEEEcCCCCEEEEEeC
Q 026389          172 SIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCET  237 (239)
Q Consensus       172 ~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~~l~~pnGia~s~dg~~lyvadt  237 (239)
                      +..+.....              ...|.|..||.+..+..... .-.....+++||||+++..+.+
T Consensus       113 ~~l~~~g~~--------------n~~G~l~~wd~~~~~~i~~~-~~~~~t~~~WsPdGr~~~ta~t  163 (194)
T PF08662_consen  113 RFLVLAGFG--------------NLNGDLEFWDVRKKKKISTF-EHSDATDVEWSPDGRYLATATT  163 (194)
T ss_pred             CEEEEEEcc--------------CCCcEEEEEECCCCEEeecc-ccCcEEEEEEcCCCCEEEEEEe
Confidence            766654321              12478999998755443222 2335688999999999988765

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=96.99  E-value=0.024  Score=50.43  Aligned_cols=100  Identities=17%  Similarity=0.250  Sum_probs=63.1

Q ss_pred             CCCEEEEeCCCeEEEEec-CCcEEEeeeccCcCccCeEEcCCCCEEEEeCCCCeEEEc-cCCceEEec-ccCCccccccc
Q 026389           87 NGVLYTATRDGWIKRLHK-NGTWENWKLIGGDTLLGITTTQENEILVCDADKGLLKVT-EEGVTVLAS-HVNGSRINLAD  163 (239)
Q Consensus        87 ~G~ly~~~~~g~I~~~~~-~G~~~~~~~~~~~p~~Gl~~d~~G~L~v~d~~~g~~~v~-~~g~~~l~~-~~~g~~~~~pn  163 (239)
                      ++.+|+++.+|.++.++. +|+. .|........ ..+++ ++++|+++....++.++ .+|..+... ...+.....| 
T Consensus       241 ~~~vy~~~~~g~l~a~d~~tG~~-~W~~~~~~~~-~p~~~-~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp-  316 (377)
T TIGR03300       241 GGQVYAVSYQGRVAALDLRSGRV-LWKRDASSYQ-GPAVD-DNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAP-  316 (377)
T ss_pred             CCEEEEEEcCCEEEEEECCCCcE-EEeeccCCcc-CceEe-CCEEEEECCCCeEEEEECCCCcEEEccccccCCccccC-
Confidence            578999889999999997 5653 3433333333 45553 57899998766777888 467332221 2222222222 


Q ss_pred             cEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEE
Q 026389          164 DLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETS  211 (239)
Q Consensus       164 ~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~  211 (239)
                        .+ .++.+|+.+..                  |.|+.+|++++++.
T Consensus       317 --~i-~g~~l~~~~~~------------------G~l~~~d~~tG~~~  343 (377)
T TIGR03300       317 --AV-VGGYLVVGDFE------------------GYLHWLSREDGSFV  343 (377)
T ss_pred             --EE-ECCEEEEEeCC------------------CEEEEEECCCCCEE
Confidence              33 25688888753                  88999999888764

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3

Probab=96.85  E-value=0.03  Score=50.11  Aligned_cols=101  Identities=21%  Similarity=0.438  Sum_probs=58.8

Q ss_pred             CCcceEEEc--C-CCCEE--EEeCCCeEEEEe--c--CCcE-----EEeeeccCcCccCeEEc-CCCCEEEEeCCCCeEE
Q 026389           77 NGPEDVCVD--R-NGVLY--TATRDGWIKRLH--K--NGTW-----ENWKLIGGDTLLGITTT-QENEILVCDADKGLLK  141 (239)
Q Consensus        77 ~gPe~ia~d--~-~G~ly--~~~~~g~I~~~~--~--~G~~-----~~~~~~~~~p~~Gl~~d-~~G~L~v~d~~~g~~~  141 (239)
                      ..|.|++.-  + +|.+|  +..++|++..|.  .  +|.+     +.| .....+- |+++| ..|.||+++...|+++
T Consensus       156 ~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f-~~~sQ~E-GCVVDDe~g~LYvgEE~~GIW~  233 (381)
T PF02333_consen  156 SEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREF-KVGSQPE-GCVVDDETGRLYVGEEDVGIWR  233 (381)
T ss_dssp             SSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEE-E-SS-EE-EEEEETTTTEEEEEETTTEEEE
T ss_pred             ccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEe-cCCCcce-EEEEecccCCEEEecCccEEEE
Confidence            446788874  2 57787  444788776543  2  4432     222 3456788 99998 5579999999999999


Q ss_pred             Ec--cCC--ceEEecccCCcccc-ccccEEEc--CC--CCEEEEeCC
Q 026389          142 VT--EEG--VTVLASHVNGSRIN-LADDLIAA--TD--GSIYFSVAS  179 (239)
Q Consensus       142 v~--~~g--~~~l~~~~~g~~~~-~pn~l~vd--~d--G~iy~td~~  179 (239)
                      ++  +++  ...++....+..+. -..||++-  .+  |.|++|+..
T Consensus       234 y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG  280 (381)
T PF02333_consen  234 YDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQG  280 (381)
T ss_dssp             EESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGG
T ss_pred             EecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCC
Confidence            98  333  34444333443332 35567763  34  467777654

1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=96.85  E-value=0.12  Score=42.31  Aligned_cols=128  Identities=20%  Similarity=0.280  Sum_probs=71.2

Q ss_pred             CCCCEEEEeCCCeEEEEe-cCCcEEEee-eccC-------cCccCeEEcCCCCEEEEeCCCCeEEEc-cCCceEEecccC
Q 026389           86 RNGVLYTATRDGWIKRLH-KNGTWENWK-LIGG-------DTLLGITTTQENEILVCDADKGLLKVT-EEGVTVLASHVN  155 (239)
Q Consensus        86 ~~G~ly~~~~~g~I~~~~-~~G~~~~~~-~~~~-------~p~~Gl~~d~~G~L~v~d~~~g~~~v~-~~g~~~l~~~~~  155 (239)
                      .++.+|+...+++|+.+| .+|+.. |. ....       .+. ...++ .+.+|++.....++.++ .+|..+......
T Consensus        75 ~~~~v~v~~~~~~l~~~d~~tG~~~-W~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~  151 (238)
T PF13360_consen   75 DGGRVYVGTSDGSLYALDAKTGKVL-WSIYLTSSPPAGVRSSS-SPAVD-GDRLYVGTSSGKLVALDPKTGKLLWKYPVG  151 (238)
T ss_dssp             ETTEEEEEETTSEEEEEETTTSCEE-EEEEE-SSCTCSTB--S-EEEEE-TTEEEEEETCSEEEEEETTTTEEEEEEESS
T ss_pred             cccccccccceeeeEecccCCccee-eeecccccccccccccc-CceEe-cCEEEEEeccCcEEEEecCCCcEEEEeecC
Confidence            478899988888999999 578653 22 1111       112 23333 45788888777888888 678222211111


Q ss_pred             Ccc-------ccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecCCCCCcceEEEcCC
Q 026389          156 GSR-------INLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKD  228 (239)
Q Consensus       156 g~~-------~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~~l~~pnGia~s~d  228 (239)
                      ..+       +...++-.+-.+|++|++...                  |+++.+|..+++.. .........++ ...+
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~------------------g~~~~~d~~tg~~~-w~~~~~~~~~~-~~~~  211 (238)
T PF13360_consen  152 EPRGSSPISSFSDINGSPVISDGRVYVSSGD------------------GRVVAVDLATGEKL-WSKPISGIYSL-PSVD  211 (238)
T ss_dssp             TT-SS--EEEETTEEEEEECCTTEEEEECCT------------------SSEEEEETTTTEEE-EEECSS-ECEC-EECC
T ss_pred             CCCCCcceeeecccccceEEECCEEEEEcCC------------------CeEEEEECCCCCEE-EEecCCCccCC-ceee
Confidence            111       111123333335689998765                  55777788888744 32223333332 3456


Q ss_pred             CCEEEEEe
Q 026389          229 EDYLVVCE  236 (239)
Q Consensus       229 g~~lyvad  236 (239)
                      +..||+.+
T Consensus       212 ~~~l~~~~  219 (238)
T PF13360_consen  212 GGTLYVTS  219 (238)
T ss_dssp             CTEEEEEE
T ss_pred             CCEEEEEe
Confidence            67777765

...

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=96.85  E-value=0.072  Score=51.35  Aligned_cols=140  Identities=20%  Similarity=0.276  Sum_probs=87.2

Q ss_pred             cceEEEcCCCCE-EEEeCCCeEEEEec-CCc-EEEee--eccCcCccCeEEcCCCCEEEEeCCCCeEEEcc-CC-c--eE
Q 026389           79 PEDVCVDRNGVL-YTATRDGWIKRLHK-NGT-WENWK--LIGGDTLLGITTTQENEILVCDADKGLLKVTE-EG-V--TV  149 (239)
Q Consensus        79 Pe~ia~d~~G~l-y~~~~~g~I~~~~~-~G~-~~~~~--~~~~~p~~Gl~~d~~G~L~v~d~~~g~~~v~~-~g-~--~~  149 (239)
                      -..++++.=|+. ++|...|.|-+++- .|- ...|.  .....+.+|+++|.-+++.|+....|++.+.. ++ .  ..
T Consensus       451 ~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~  530 (910)
T KOG1539|consen  451 ATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKS  530 (910)
T ss_pred             eEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeee
Confidence            445677776665 46778999999985 342 22332  11233444999998899999888888887752 22 1  00


Q ss_pred             E-----------------------------ec--------ccCCccccccccEEEcCCCCEEEEeCCCCcCcccccccce
Q 026389          150 L-----------------------------AS--------HVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLL  192 (239)
Q Consensus       150 l-----------------------------~~--------~~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~  192 (239)
                      +                             .+        .+.|. -+..|++++.+||+..++.+-             
T Consensus       531 l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh-~nritd~~FS~DgrWlisasm-------------  596 (910)
T KOG1539|consen  531 LRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGH-GNRITDMTFSPDGRWLISASM-------------  596 (910)
T ss_pred             eccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhcc-ccceeeeEeCCCCcEEEEeec-------------
Confidence            0                             00        01111 146899999999987666543             


Q ss_pred             eecCCceEEEEeCCCCeEEEecCCCCCcceEEEcCCCCEEEEEe
Q 026389          193 EAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCE  236 (239)
Q Consensus       193 e~~~~g~v~~~d~~~~~~~~~~~~l~~pnGia~s~dg~~lyvad  236 (239)
                          .+.|..||.-++...-.+.--.-+..+.|+|.|++|-.+.
T Consensus       597 ----D~tIr~wDlpt~~lID~~~vd~~~~sls~SPngD~LAT~H  636 (910)
T KOG1539|consen  597 ----DSTIRTWDLPTGTLIDGLLVDSPCTSLSFSPNGDFLATVH  636 (910)
T ss_pred             ----CCcEEEEeccCcceeeeEecCCcceeeEECCCCCEEEEEE
Confidence                4678889977765432221112356788999999876654

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=96.83  E-value=0.026  Score=50.66  Aligned_cols=132  Identities=16%  Similarity=0.197  Sum_probs=82.9

Q ss_pred             cceEEEcCCCCEE-EEeCCCeEEEEecCC--cEEEeeeccCcCccCeEEcCCCCEEEEeCCCCeEEE-c--cCC-ceEEe
Q 026389           79 PEDVCVDRNGVLY-TATRDGWIKRLHKNG--TWENWKLIGGDTLLGITTTQENEILVCDADKGLLKV-T--EEG-VTVLA  151 (239)
Q Consensus        79 Pe~ia~d~~G~ly-~~~~~g~I~~~~~~G--~~~~~~~~~~~p~~Gl~~d~~G~L~v~d~~~g~~~v-~--~~g-~~~l~  151 (239)
                      -.+.++.|||.|+ ++..||.|..||...  ....|....+..- .+.|..+|.-+++....+-+++ |  ... .+.+.
T Consensus       350 ~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk-~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~  428 (506)
T KOG0289|consen  350 YTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVK-AISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQ  428 (506)
T ss_pred             eEEeeEcCCceEEeccCCCceEEEEEcCCccccccCCCCCCcee-EEEeccCceEEEEEecCCeEEEEEehhhcccceee
Confidence            4567899999999 566888888888532  2334433333344 7999988876666666664444 4  222 33222


Q ss_pred             cccCCccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEe---cCCCCCcceEEEcCC
Q 026389          152 SHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSIL---LDSLFFANGVALSKD  228 (239)
Q Consensus       152 ~~~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~---~~~l~~pnGia~s~d  228 (239)
                      -. +   ....+.+.+|..|......++                 .=+||.|+..+++.+.+   .+.....+|+.|..+
T Consensus       429 l~-~---~~~v~s~~fD~SGt~L~~~g~-----------------~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~  487 (506)
T KOG0289|consen  429 LD-E---KKEVNSLSFDQSGTYLGIAGS-----------------DLQVYICKKKTKSWTEIKELADHSGLSTGVRFGEH  487 (506)
T ss_pred             cc-c---cccceeEEEcCCCCeEEeecc-----------------eeEEEEEecccccceeeehhhhcccccceeeeccc
Confidence            11 1   124789999999965544433                 34789998777665443   334457899999877


Q ss_pred             CCEE
Q 026389          229 EDYL  232 (239)
Q Consensus       229 g~~l  232 (239)
                      .+++
T Consensus       488 aq~l  491 (506)
T KOG0289|consen  488 AQYL  491 (506)
T ss_pred             ceEE
Confidence            6543

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=96.83  E-value=0.0058  Score=55.15  Aligned_cols=143  Identities=13%  Similarity=0.165  Sum_probs=86.2

Q ss_pred             CCcceEEEcCCC-CEE-EEeCCCeEEEEec-CCcE-EEeeeccCcCccCeEEcCCCCEEEEeCCCCeEEEccCCceEEec
Q 026389           77 NGPEDVCVDRNG-VLY-TATRDGWIKRLHK-NGTW-ENWKLIGGDTLLGITTTQENEILVCDADKGLLKVTEEGVTVLAS  152 (239)
Q Consensus        77 ~gPe~ia~d~~G-~ly-~~~~~g~I~~~~~-~G~~-~~~~~~~~~p~~Gl~~d~~G~L~v~d~~~g~~~v~~~g~~~l~~  152 (239)
                      .-|..+-+.|++ +++ +|..+++|..||. .|++ +.+....+.-+ .+.|-++|+=+|+.+...-+++.+.+..+...
T Consensus       300 ~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~-~i~F~~~g~rFissSDdks~riWe~~~~v~ik  378 (503)
T KOG0282|consen  300 KVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAIL-DITFVDEGRRFISSSDDKSVRIWENRIPVPIK  378 (503)
T ss_pred             CCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhhee-eeEEccCCceEeeeccCccEEEEEcCCCccch
Confidence            357788888876 666 6669999999995 4553 22233345556 78888889888888777788887554211111


Q ss_pred             ccCCccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCC------CCeEEEecCCCCCcceEEEc
Q 026389          153 HVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPS------LNETSILLDSLFFANGVALS  226 (239)
Q Consensus       153 ~~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~------~~~~~~~~~~l~~pnGia~s  226 (239)
                      ..........--++..|+|..+.+.+-                 ..+++.|...      -++.-.=...-.++..+.||
T Consensus       379 ~i~~~~~hsmP~~~~~P~~~~~~aQs~-----------------dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fS  441 (503)
T KOG0282|consen  379 NIADPEMHTMPCLTLHPNGKWFAAQSM-----------------DNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFS  441 (503)
T ss_pred             hhcchhhccCcceecCCCCCeehhhcc-----------------CceEEEEecccccccCHhhhhcceeccCceeeEEEc
Confidence            111112233446788888887666554                 2334443321      01111111123578899999


Q ss_pred             CCCCEEEEEeC
Q 026389          227 KDEDYLVVCET  237 (239)
Q Consensus       227 ~dg~~lyvadt  237 (239)
                      |||++|.--|+
T Consensus       442 pDG~~l~SGds  452 (503)
T KOG0282|consen  442 PDGRTLCSGDS  452 (503)
T ss_pred             CCCCeEEeecC
Confidence            99998876554

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=96.82  E-value=0.048  Score=47.36  Aligned_cols=96  Identities=16%  Similarity=0.212  Sum_probs=61.3

Q ss_pred             EEEcCCCC-EEEEe-----CCCeEEEEecCCc---EEEeeeccCcCccCeEEcCCC-CEEEEeCC------CC-------
Q 026389           82 VCVDRNGV-LYTAT-----RDGWIKRLHKNGT---WENWKLIGGDTLLGITTTQEN-EILVCDAD------KG-------  138 (239)
Q Consensus        82 ia~d~~G~-ly~~~-----~~g~I~~~~~~G~---~~~~~~~~~~p~~Gl~~d~~G-~L~v~d~~------~g-------  138 (239)
                      -+|++||+ ||++-     ..|.|-.+|....   +..|...+-.|+ -+.+.+|| .|.|++.+      .|       
T Consensus        56 g~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPH-el~l~pDG~tLvVANGGI~Thpd~GR~kLNl~  134 (305)
T PF07433_consen   56 GVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPH-ELLLMPDGETLVVANGGIETHPDSGRAKLNLD  134 (305)
T ss_pred             EEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChh-hEEEcCCCCEEEEEcCCCccCcccCceecChh
Confidence            47788886 55542     4589999997643   344555667799 99999999 78888754      12       


Q ss_pred             -----eEEEc-cCC--ceEEecccCCccccccccEEEcCCCCEEEEeCC
Q 026389          139 -----LLKVT-EEG--VTVLASHVNGSRINLADDLIAATDGSIYFSVAS  179 (239)
Q Consensus       139 -----~~~v~-~~g--~~~l~~~~~g~~~~~pn~l~vd~dG~iy~td~~  179 (239)
                           ++.+| .+|  .+... ..+.....+.--++++.+|.++|....
T Consensus       135 tM~psL~~ld~~sG~ll~q~~-Lp~~~~~lSiRHLa~~~~G~V~~a~Q~  182 (305)
T PF07433_consen  135 TMQPSLVYLDARSGALLEQVE-LPPDLHQLSIRHLAVDGDGTVAFAMQY  182 (305)
T ss_pred             hcCCceEEEecCCCceeeeee-cCccccccceeeEEecCCCcEEEEEec
Confidence                 23343 344  22211 111112245778999999999998643

>PF14517 Tachylectin: Tachylectin; PDB: 1TL2_A

Probab=96.79  E-value=0.0038  Score=51.89  Aligned_cols=124  Identities=22%  Similarity=0.301  Sum_probs=65.5

Q ss_pred             CcccccceEeccCCcCCcceEEEcCCCCEEEEeCCCeEEEEec--CCc--E-----EEeee-ccCcCccCeEEcCCCCEE
Q 026389           62 TSDIQSVTRLGEGILNGPEDVCVDRNGVLYTATRDGWIKRLHK--NGT--W-----ENWKL-IGGDTLLGITTTQENEIL  131 (239)
Q Consensus        62 n~~l~~~~~l~~g~~~gPe~ia~d~~G~ly~~~~~g~I~~~~~--~G~--~-----~~~~~-~~~~p~~Gl~~d~~G~L~  131 (239)
                      |+.+...++|..+.-..=..|.++++|.||....+|+++|...  ++.  +     +.+.. .-.... -+-++++|-||
T Consensus        66 ~~~~~~~~~Ig~g~W~~F~~i~~d~~G~LYaV~~~G~lyR~~~~~~~~~~W~~~~~~~iG~~GW~~f~-~vfa~~~GvLY  144 (229)
T PF14517_consen   66 NTWDSGSKQIGDGGWNSFKFIFFDPTGVLYAVTPDGKLYRHPRPTNGSDNWIGGSGKKIGGTGWNDFD-AVFAGPNGVLY  144 (229)
T ss_dssp             --HHHH-EEEE-S-GGG-SEEEE-TTS-EEEEETT-EEEEES---STT--HHH-HSEEEE-SSGGGEE-EEEE-TTS-EE
T ss_pred             ccccccCcccccCcccceeEEEecCCccEEEeccccceeeccCCCccCcchhhccceecccCCCccce-EEEeCCCccEE
Confidence            4444667888888333333899999999998888999999874  221  1     22211 112233 56778999999


Q ss_pred             EEeCCCCeEEEc-cCC--c-----eEEecccCCccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEE
Q 026389          132 VCDADKGLLKVT-EEG--V-----TVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKY  203 (239)
Q Consensus       132 v~d~~~g~~~v~-~~g--~-----~~l~~~~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~  203 (239)
                      +.+....+++.. +++  -     +.++.   +......--|...++|+||..++                  +|+|||+
T Consensus       145 ~i~~dg~~~~~~~p~~~~~~W~~~s~~v~---~~gw~~~~~i~~~~~g~L~~V~~------------------~G~lyr~  203 (229)
T PF14517_consen  145 AITPDGRLYRRYRPDGGSDRWLSGSGLVG---GGGWDSFHFIFFSPDGNLWAVKS------------------NGKLYRG  203 (229)
T ss_dssp             EEETTE-EEEE---SSTT--HHHH-EEEE---SSSGGGEEEEEE-TTS-EEEE-E------------------TTEEEEE
T ss_pred             EEcCCCceEEeCCCCCCCCccccccceec---cCCcccceEEeeCCCCcEEEEec------------------CCEEecc
Confidence            999765566664 322  1     22221   22223356788899999998854                  4899999


Q ss_pred             eCCC
Q 026389          204 DPSL  207 (239)
Q Consensus       204 d~~~  207 (239)
                      .+.+
T Consensus       204 ~~p~  207 (229)
T PF14517_consen  204 RPPQ  207 (229)
T ss_dssp             S---
T ss_pred             CCcc
Confidence            8764

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=96.76  E-value=0.1  Score=44.76  Aligned_cols=131  Identities=12%  Similarity=0.093  Sum_probs=85.2

Q ss_pred             eEEEcC-CCCEEEEe-CCCeEEEEec-CC-cEEEeeeccCcCccCeEEcCCCCEEEEeCCCCeEEEc--c-CC-ceEEec
Q 026389           81 DVCVDR-NGVLYTAT-RDGWIKRLHK-NG-TWENWKLIGGDTLLGITTTQENEILVCDADKGLLKVT--E-EG-VTVLAS  152 (239)
Q Consensus        81 ~ia~d~-~G~ly~~~-~~g~I~~~~~-~G-~~~~~~~~~~~p~~Gl~~d~~G~L~v~d~~~g~~~v~--~-~g-~~~l~~  152 (239)
                      ++.+.| +++.|++. -|.....||. +| -.++|.......+ .+.|-|+|.-+++-+..+..++.  . +- +.+..+
T Consensus       191 slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDIN-sv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~  269 (343)
T KOG0286|consen  191 SLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDIN-SVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSH  269 (343)
T ss_pred             EEecCCCCCCeEEecccccceeeeeccCcceeEeecccccccc-eEEEccCCCeeeecCCCceeEEEeecCCcEEeeecc
Confidence            345556 77777544 5666666663 33 3566666667788 99999999999998877777654  2 33 444432


Q ss_pred             ccCCccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEE-ecCCCCCcceEEEcCCCCE
Q 026389          153 HVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSI-LLDSLFFANGVALSKDEDY  231 (239)
Q Consensus       153 ~~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~-~~~~l~~pnGia~s~dg~~  231 (239)
                      .   ......+.+++...|++.|+...                 ...+..+|.-.++..- +...-.....+.++|||.-
T Consensus       270 ~---~~~~gitSv~FS~SGRlLfagy~-----------------d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~a  329 (343)
T KOG0286|consen  270 D---SIICGITSVAFSKSGRLLFAGYD-----------------DFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMA  329 (343)
T ss_pred             C---cccCCceeEEEcccccEEEeeec-----------------CCceeEeeccccceEEEeeccCCeeEEEEECCCCcE
Confidence            1   12234689999999999998643                 3567788864444443 3333456677888888864


Q ss_pred             E
Q 026389          232 L  232 (239)
Q Consensus       232 l  232 (239)
                      |
T Consensus       330 v  330 (343)
T KOG0286|consen  330 V  330 (343)
T ss_pred             E
Confidence            3

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=96.75  E-value=0.076  Score=49.90  Aligned_cols=108  Identities=18%  Similarity=0.340  Sum_probs=63.3

Q ss_pred             CCCEEEEeCCCeEEEEec-CCcEEEeeeccC-----c--------CccCeEEcCCCCEEEEeCCCCeEEEc-cCCceEEe
Q 026389           87 NGVLYTATRDGWIKRLHK-NGTWENWKLIGG-----D--------TLLGITTTQENEILVCDADKGLLKVT-EEGVTVLA  151 (239)
Q Consensus        87 ~G~ly~~~~~g~I~~~~~-~G~~~~~~~~~~-----~--------p~~Gl~~d~~G~L~v~d~~~g~~~v~-~~g~~~l~  151 (239)
                      +|.||+++.+++|+.+|. +|+. .|.....     .        .. |+++. ++++|+++....++.+| .+|..+..
T Consensus        69 ~g~vyv~s~~g~v~AlDa~TGk~-lW~~~~~~~~~~~~~~~~~~~~r-g~av~-~~~v~v~t~dg~l~ALDa~TGk~~W~  145 (527)
T TIGR03075        69 DGVMYVTTSYSRVYALDAKTGKE-LWKYDPKLPDDVIPVMCCDVVNR-GVALY-DGKVFFGTLDARLVALDAKTGKVVWS  145 (527)
T ss_pred             CCEEEEECCCCcEEEEECCCCce-eeEecCCCCcccccccccccccc-cceEE-CCEEEEEcCCCEEEEEECCCCCEEee
Confidence            789999998999999996 5653 2321111     1        13 45553 57899998878889999 57833222


Q ss_pred             cccCCcc--ccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeE
Q 026389          152 SHVNGSR--INLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNET  210 (239)
Q Consensus       152 ~~~~g~~--~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~  210 (239)
                      ....+..  ......-.+. +|.||+...+..++            ..|.|+.||..+|+.
T Consensus       146 ~~~~~~~~~~~~tssP~v~-~g~Vivg~~~~~~~------------~~G~v~AlD~~TG~~  193 (527)
T TIGR03075       146 KKNGDYKAGYTITAAPLVV-KGKVITGISGGEFG------------VRGYVTAYDAKTGKL  193 (527)
T ss_pred             cccccccccccccCCcEEE-CCEEEEeecccccC------------CCcEEEEEECCCCce
Confidence            1111110  0011112222 67888876543222            247888888887765

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>PTZ00420 coronin; Provisional

Probab=96.75  E-value=0.15  Score=48.24  Aligned_cols=113  Identities=12%  Similarity=0.036  Sum_probs=70.3

Q ss_pred             CCcceEEEcCC-CC-EEEEeCCCeEEEEecC-C-c-EE-------EeeeccCcCccCeEEcCCCC-EEEEeCCCCeEEEc
Q 026389           77 NGPEDVCVDRN-GV-LYTATRDGWIKRLHKN-G-T-WE-------NWKLIGGDTLLGITTTQENE-ILVCDADKGLLKVT  143 (239)
Q Consensus        77 ~gPe~ia~d~~-G~-ly~~~~~g~I~~~~~~-G-~-~~-------~~~~~~~~p~~Gl~~d~~G~-L~v~d~~~g~~~v~  143 (239)
                      ..-.+++|.++ +. |.+++.|+.|..|+.. + . ..       .+........ .+++++++. ++++....+.+++.
T Consensus        75 ~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~-sVaf~P~g~~iLaSgS~DgtIrIW  153 (568)
T PTZ00420         75 SSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKIS-IIDWNPMNYYIMCSSGFDSFVNIW  153 (568)
T ss_pred             CCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEE-EEEECCCCCeEEEEEeCCCeEEEE
Confidence            34567899985 55 4577799999999852 2 1 11       1222223455 789999886 44555556777775


Q ss_pred             --cCCceEEecccCCccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEE
Q 026389          144 --EEGVTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETS  211 (239)
Q Consensus       144 --~~g~~~l~~~~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~  211 (239)
                        ..+.....-.. .   .....++++++|.++++...                 .+.|..||+.+++..
T Consensus       154 Dl~tg~~~~~i~~-~---~~V~SlswspdG~lLat~s~-----------------D~~IrIwD~Rsg~~i  202 (568)
T PTZ00420        154 DIENEKRAFQINM-P---KKLSSLKWNIKGNLLSGTCV-----------------GKHMHIIDPRKQEIA  202 (568)
T ss_pred             ECCCCcEEEEEec-C---CcEEEEEECCCCCEEEEEec-----------------CCEEEEEECCCCcEE
Confidence              34421111011 1   23678999999998877543                 467888998877654

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=96.72  E-value=0.1  Score=49.91  Aligned_cols=95  Identities=17%  Similarity=0.139  Sum_probs=62.2

Q ss_pred             cceEEEcCCCCEEEE-eCCC-eEEEEec-CCcEEEeeeccCcCccCeEEcCCCCEEEEeCCCCeEEEc----cCC-ceEE
Q 026389           79 PEDVCVDRNGVLYTA-TRDG-WIKRLHK-NGTWENWKLIGGDTLLGITTTQENEILVCDADKGLLKVT----EEG-VTVL  150 (239)
Q Consensus        79 Pe~ia~d~~G~ly~~-~~~g-~I~~~~~-~G~~~~~~~~~~~p~~Gl~~d~~G~L~v~d~~~g~~~v~----~~g-~~~l  150 (239)
                      -.++|+|+.|.|.+. +.+. .|+.|+. .|+..........|..++.|++.|.++++.+....+++.    ..| ++.+
T Consensus       438 fscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl  517 (893)
T KOG0291|consen  438 FSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETL  517 (893)
T ss_pred             eeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCceeeeE
Confidence            346899999988854 4443 6777774 677544333333454499999999988888777777664    356 6666


Q ss_pred             ecccCCccccccccEEEcCCC-CEEEEeCC
Q 026389          151 ASHVNGSRINLADDLIAATDG-SIYFSVAS  179 (239)
Q Consensus       151 ~~~~~g~~~~~pn~l~vd~dG-~iy~td~~  179 (239)
                      .-.-      -.-++++.||| .|-++...
T Consensus       518 ~i~s------dvl~vsfrPdG~elaVaTld  541 (893)
T KOG0291|consen  518 EIRS------DVLAVSFRPDGKELAVATLD  541 (893)
T ss_pred             eecc------ceeEEEEcCCCCeEEEEEec
Confidence            3221      14577888888 56665443

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=96.69  E-value=0.03  Score=49.30  Aligned_cols=64  Identities=16%  Similarity=0.202  Sum_probs=41.1

Q ss_pred             ccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEe-c-CCC-------------CCcceEEE
Q 026389          161 LADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSIL-L-DSL-------------FFANGVAL  225 (239)
Q Consensus       161 ~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~-~-~~l-------------~~pnGia~  225 (239)
                      -+.+|+++++|.+|+++....-           .....+|++|+.++...+.+ + ..+             ...-||++
T Consensus        86 D~Egi~~~~~g~~~is~E~~~~-----------~~~~p~I~~~~~~G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~  154 (326)
T PF13449_consen   86 DPEGIAVPPDGSFWISSEGGRT-----------GGIPPRIRRFDLDGRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAV  154 (326)
T ss_pred             ChhHeEEecCCCEEEEeCCccC-----------CCCCCEEEEECCCCcccceEccccccccccCccccccCCCCeEEEEE
Confidence            4679999889999999865210           01126899999873332333 1 111             12358999


Q ss_pred             cCCCCEEEEE
Q 026389          226 SKDEDYLVVC  235 (239)
Q Consensus       226 s~dg~~lyva  235 (239)
                      ++||++||++
T Consensus       155 ~~dG~~l~~~  164 (326)
T PF13449_consen  155 SPDGRTLFAA  164 (326)
T ss_pred             CCCCCEEEEE
Confidence            9999966654

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=96.65  E-value=0.052  Score=46.19  Aligned_cols=117  Identities=15%  Similarity=0.098  Sum_probs=68.1

Q ss_pred             ceEeccCCcCCcceEEEcCCCCEEEEe---CCCeEEEEec-CCcEEEeee--ccCcCccCeEEcCCCCEEEEeCCCCeEE
Q 026389           68 VTRLGEGILNGPEDVCVDRNGVLYTAT---RDGWIKRLHK-NGTWENWKL--IGGDTLLGITTTQENEILVCDADKGLLK  141 (239)
Q Consensus        68 ~~~l~~g~~~gPe~ia~d~~G~ly~~~---~~g~I~~~~~-~G~~~~~~~--~~~~p~~Gl~~d~~G~L~v~d~~~g~~~  141 (239)
                      ++..+-..-..-+|+.++.+|.||-++   ...+|.+++. +|++.....  .....- |+++- +++||......+...
T Consensus        36 v~~ypHd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgE-Git~~-~d~l~qLTWk~~~~f  113 (264)
T PF05096_consen   36 VETYPHDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGE-GITIL-GDKLYQLTWKEGTGF  113 (264)
T ss_dssp             EEEEE--TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EE-EEEEE-TTEEEEEESSSSEEE
T ss_pred             EEECCCCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccce-eEEEE-CCEEEEEEecCCeEE
Confidence            344444444567788997889999766   3458899996 466533222  223455 88885 568999888877766


Q ss_pred             Ec-cCCceEEec-ccCCccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCe
Q 026389          142 VT-EEGVTVLAS-HVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNE  209 (239)
Q Consensus       142 v~-~~g~~~l~~-~~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~  209 (239)
                      +. .+-.+.+.. .+.+.    --|++-| +..+|.||.+                  .+|+.+||++-+
T Consensus       114 ~yd~~tl~~~~~~~y~~E----GWGLt~d-g~~Li~SDGS------------------~~L~~~dP~~f~  160 (264)
T PF05096_consen  114 VYDPNTLKKIGTFPYPGE----GWGLTSD-GKRLIMSDGS------------------SRLYFLDPETFK  160 (264)
T ss_dssp             EEETTTTEEEEEEE-SSS------EEEEC-SSCEEEE-SS------------------SEEEEE-TTT-S
T ss_pred             EEccccceEEEEEecCCc----ceEEEcC-CCEEEEECCc------------------cceEEECCcccc
Confidence            54 443333322 22332    3577744 3389999987                  578888887643

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=96.60  E-value=0.067  Score=52.57  Aligned_cols=98  Identities=15%  Similarity=0.052  Sum_probs=68.7

Q ss_pred             cceEEEcCCCCEEEEe-CCCeEEEEec-C-CcEEEeeeccCcCccCeEEcCCCCEEEEeCCCCeEEEcc---CC-ceEEe
Q 026389           79 PEDVCVDRNGVLYTAT-RDGWIKRLHK-N-GTWENWKLIGGDTLLGITTTQENEILVCDADKGLLKVTE---EG-VTVLA  151 (239)
Q Consensus        79 Pe~ia~d~~G~ly~~~-~~g~I~~~~~-~-G~~~~~~~~~~~p~~Gl~~d~~G~L~v~d~~~g~~~v~~---~g-~~~l~  151 (239)
                      =.+++|+|++.+.++. .|++|+.|+. . ...+++....+.+- |+.+||-|+.+.+.+..+.+++..   -| .+.+.
T Consensus       132 V~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VK-Gvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It  210 (942)
T KOG0973|consen  132 VLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVK-GVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSIT  210 (942)
T ss_pred             cceeccCCCccEEEEecccceEEEEccccceeeeeeeccccccc-ceEECCccCeeeeecCCceEEEEEcccceeeEeec
Confidence            3468999999888655 8999999974 2 23455566677888 999999999999999889888873   23 44444


Q ss_pred             cccCCcc-ccccccEEEcCCCCEEEEe
Q 026389          152 SHVNGSR-INLADDLIAATDGSIYFSV  177 (239)
Q Consensus       152 ~~~~g~~-~~~pn~l~vd~dG~iy~td  177 (239)
                      +.++..+ -.+..-+...|||....+-
T Consensus       211 ~pf~~~~~~T~f~RlSWSPDG~~las~  237 (942)
T KOG0973|consen  211 KPFEESPLTTFFLRLSWSPDGHHLASP  237 (942)
T ss_pred             cchhhCCCcceeeecccCCCcCeecch
Confidence            4443221 1344567778898766653

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=96.60  E-value=0.052  Score=51.04  Aligned_cols=28  Identities=18%  Similarity=0.255  Sum_probs=23.7

Q ss_pred             CCcceEEEcCCCCEEEEeCCCeEEEEec
Q 026389           77 NGPEDVCVDRNGVLYTATRDGWIKRLHK  104 (239)
Q Consensus        77 ~gPe~ia~d~~G~ly~~~~~g~I~~~~~  104 (239)
                      ..-|+++|.+.|+|+....+|.|..||.
T Consensus        70 rsIE~L~W~e~~RLFS~g~sg~i~EwDl   97 (691)
T KOG2048|consen   70 RSIESLAWAEGGRLFSSGLSGSITEWDL   97 (691)
T ss_pred             CceeeEEEccCCeEEeecCCceEEEEec
Confidence            4567899999999998888888888885

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=96.53  E-value=0.12  Score=46.27  Aligned_cols=123  Identities=12%  Similarity=0.115  Sum_probs=74.3

Q ss_pred             CCCeEEEEec-CCcEEEeeeccCcCccCeEEcCCC-CEEEEeCCCCeEEEccCC--ceEEecccCCcc-ccccccEEEcC
Q 026389           95 RDGWIKRLHK-NGTWENWKLIGGDTLLGITTTQEN-EILVCDADKGLLKVTEEG--VTVLASHVNGSR-INLADDLIAAT  169 (239)
Q Consensus        95 ~~g~I~~~~~-~G~~~~~~~~~~~p~~Gl~~d~~G-~L~v~d~~~g~~~v~~~g--~~~l~~~~~g~~-~~~pn~l~vd~  169 (239)
                      .|++|..||. .+....-.+.+++-. .+.+..+| .|+.+.....+-.+|--+  +..... .+|.. -.-.+-+.+.|
T Consensus       320 ~DkkvRfwD~Rs~~~~~sv~~gg~vt-Sl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~s-A~g~k~asDwtrvvfSp  397 (459)
T KOG0288|consen  320 FDKKVRFWDIRSADKTRSVPLGGRVT-SLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFS-AEGFKCASDWTRVVFSP  397 (459)
T ss_pred             cccceEEEeccCCceeeEeecCccee-eEeeccCCeEEeeecCCCceeeeecccccEEEEee-ccccccccccceeEECC
Confidence            6777777773 333333344555555 66676777 577774433333344222  333221 12211 11256788888


Q ss_pred             CCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecCCCCC---cceEEEcCCCCEEEEEe
Q 026389          170 DGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFF---ANGVALSKDEDYLVVCE  236 (239)
Q Consensus       170 dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~~l~~---pnGia~s~dg~~lyvad  236 (239)
                      +|....+.+.                 +|+||.|+..+++++..+..-..   .+.++|++-|+.|+-++
T Consensus       398 d~~YvaAGS~-----------------dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsad  450 (459)
T KOG0288|consen  398 DGSYVAAGSA-----------------DGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSAD  450 (459)
T ss_pred             CCceeeeccC-----------------CCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhccc
Confidence            8875555443                 79999999999999887754332   46788999998887655

>PTZ00421 coronin; Provisional

Probab=96.51  E-value=0.24  Score=46.24  Aligned_cols=139  Identities=14%  Similarity=0.133  Sum_probs=76.8

Q ss_pred             cceEEEcCCC-C-EEEEeCCCeEEEEecC-CcE-EEeeeccCcCccCeEEcCCCCEEEEeCCCCeEEEc--cCC--ceEE
Q 026389           79 PEDVCVDRNG-V-LYTATRDGWIKRLHKN-GTW-ENWKLIGGDTLLGITTTQENEILVCDADKGLLKVT--EEG--VTVL  150 (239)
Q Consensus        79 Pe~ia~d~~G-~-ly~~~~~g~I~~~~~~-G~~-~~~~~~~~~p~~Gl~~d~~G~L~v~d~~~g~~~v~--~~g--~~~l  150 (239)
                      -..++|.+++ + |.+++.|+.|..||.. ++. ..+........ .+++.++|+++++-...+.+++.  .++  ...+
T Consensus       128 V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~-sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl  206 (493)
T PTZ00421        128 VGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQIT-SLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSV  206 (493)
T ss_pred             EEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceE-EEEEECCCCEEEEecCCCEEEEEECCCCcEEEEE
Confidence            4568999864 4 5566789999999964 443 22222233455 89999999988887777888775  345  2222


Q ss_pred             ecccCCccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCe--EEEec-CCCCCcceEEEcC
Q 026389          151 ASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNE--TSILL-DSLFFANGVALSK  227 (239)
Q Consensus       151 ~~~~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~--~~~~~-~~l~~pnGia~s~  227 (239)
                      ... .+   .....+...+++..+++-..++             ...+.|..||.....  ..... +......-..+++
T Consensus       207 ~~H-~~---~~~~~~~w~~~~~~ivt~G~s~-------------s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~  269 (493)
T PTZ00421        207 EAH-AS---AKSQRCLWAKRKDLIITLGCSK-------------SQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDE  269 (493)
T ss_pred             ecC-CC---CcceEEEEcCCCCeEEEEecCC-------------CCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcC
Confidence            211 11   1123445566665555432110             114678888875332  11111 1111122235678


Q ss_pred             CCCEEEEE
Q 026389          228 DEDYLVVC  235 (239)
Q Consensus       228 dg~~lyva  235 (239)
                      |++.||++
T Consensus       270 d~~~L~lg  277 (493)
T PTZ00421        270 DTNLLYIG  277 (493)
T ss_pred             CCCEEEEE
Confidence            88877765

>PRK13684 Ycf48-like protein; Provisional

Probab=96.49  E-value=0.33  Score=42.89  Aligned_cols=65  Identities=15%  Similarity=0.172  Sum_probs=33.8

Q ss_pred             CcceEEEcCCCCEEEEeCCCeEEEEecCCc-EEEeeec----cCcCccCeEEcCCCCEEEEeCCCCeEEEccC
Q 026389           78 GPEDVCVDRNGVLYTATRDGWIKRLHKNGT-WENWKLI----GGDTLLGITTTQENEILVCDADKGLLKVTEE  145 (239)
Q Consensus        78 gPe~ia~d~~G~ly~~~~~g~I~~~~~~G~-~~~~~~~----~~~p~~Gl~~d~~G~L~v~d~~~g~~~v~~~  145 (239)
                      ...+|+|..+.+.|+....|.|++=...|+ |+.....    ..+.+ .+.++. ++.|++-.. +.+....|
T Consensus        47 ~l~~v~F~d~~~g~avG~~G~il~T~DgG~tW~~~~~~~~~~~~~l~-~v~~~~-~~~~~~G~~-g~i~~S~D  116 (334)
T PRK13684         47 NLLDIAFTDPNHGWLVGSNRTLLETNDGGETWEERSLDLPEENFRLI-SISFKG-DEGWIVGQP-SLLLHTTD  116 (334)
T ss_pred             ceEEEEEeCCCcEEEEECCCEEEEEcCCCCCceECccCCccccccee-eeEEcC-CcEEEeCCC-ceEEEECC
Confidence            455677765556664445677777643443 4443211    12234 677753 456666543 44444433

>smart00135 LY Low-density lipoprotein-receptor YWTD domain

Probab=96.47  E-value=0.0062  Score=36.20  Aligned_cols=28  Identities=25%  Similarity=0.121  Sum_probs=24.0

Q ss_pred             EecCCCCCcceEEEcCCCCEEEEEeCCC
Q 026389          212 ILLDSLFFANGVALSKDEDYLVVCETFK  239 (239)
Q Consensus       212 ~~~~~l~~pnGia~s~dg~~lyvadt~~  239 (239)
                      .+..++..|+|+|++++++.||++|+.+
T Consensus         3 ~~~~~~~~~~~la~d~~~~~lYw~D~~~   30 (43)
T smart00135        3 LLSEGLGHPNGLAVDWIEGRLYWTDWGL   30 (43)
T ss_pred             EEECCCCCcCEEEEeecCCEEEEEeCCC
Confidence            3456789999999999999999999863

Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=96.47  E-value=0.066  Score=51.20  Aligned_cols=139  Identities=10%  Similarity=0.127  Sum_probs=89.9

Q ss_pred             CcceEEEcC-CCCEE-EEeCCCeEEEEec-CCcEEEeeeccCcCccCeEEcCCCCEEEEeCCCCeEEEc-cCCceEE---
Q 026389           78 GPEDVCVDR-NGVLY-TATRDGWIKRLHK-NGTWENWKLIGGDTLLGITTTQENEILVCDADKGLLKVT-EEGVTVL---  150 (239)
Q Consensus        78 gPe~ia~d~-~G~ly-~~~~~g~I~~~~~-~G~~~~~~~~~~~p~~Gl~~d~~G~L~v~d~~~g~~~v~-~~g~~~l---  150 (239)
                      .-.+|+|.| |.+.| .|+-||+|..|+. +-++..|.+...... .+++.|||+..|.....|..++. ..|.+..   
T Consensus       411 fVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~~lIT-Avcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~  489 (712)
T KOG0283|consen  411 FVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLRDLIT-AVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDF  489 (712)
T ss_pred             eeEEEEecccCCCcEeecccccceEEeecCcCeeEeehhhhhhhe-eEEeccCCceEEEEEeccEEEEEEccCCeEEEee
Confidence            456899998 55544 6779999988884 667777776665566 89999999988888788888876 3441111   


Q ss_pred             -e--cccCCccccccccEEEcCCC--CEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecCCCCCcc---e
Q 026389          151 -A--SHVNGSRINLADDLIAATDG--SIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFAN---G  222 (239)
Q Consensus       151 -~--~~~~g~~~~~pn~l~vd~dG--~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~~l~~pn---G  222 (239)
                       +  ..-.........|+.+.+--  .+.||...                  -||-.||....++.....|+...+   -
T Consensus       490 ~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnD------------------SrIRI~d~~~~~lv~KfKG~~n~~SQ~~  551 (712)
T KOG0283|consen  490 HIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSND------------------SRIRIYDGRDKDLVHKFKGFRNTSSQIS  551 (712)
T ss_pred             eEeeccCccccCceeeeeEecCCCCCeEEEecCC------------------CceEEEeccchhhhhhhcccccCCccee
Confidence             1  11111122356777777643  58888654                  477778875455544445544443   3


Q ss_pred             EEEcCCCCEEEEE
Q 026389          223 VALSKDEDYLVVC  235 (239)
Q Consensus       223 ia~s~dg~~lyva  235 (239)
                      -.|+.||++|+.+
T Consensus       552 Asfs~Dgk~IVs~  564 (712)
T KOG0283|consen  552 ASFSSDGKHIVSA  564 (712)
T ss_pred             eeEccCCCEEEEe
Confidence            5678888877543

>COG3211 PhoX Predicted phosphatase [General function prediction only]

Probab=96.47  E-value=0.099  Score=48.73  Aligned_cols=79  Identities=9%  Similarity=0.225  Sum_probs=49.6

Q ss_pred             CccccccccEEEcCC-CCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCC-------eEEEecC--------C---
Q 026389          156 GSRINLADDLIAATD-GSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLN-------ETSILLD--------S---  216 (239)
Q Consensus       156 g~~~~~pn~l~vd~d-G~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~-------~~~~~~~--------~---  216 (239)
                      ..++.+|.++++.+. |.+||+.....-..++ ....-+....|+|+||-+.++       +.++++.        +   
T Consensus       413 AT~mdRpE~i~~~p~~g~Vy~~lTNn~~r~~~-~aNpr~~n~~G~I~r~~p~~~d~t~~~ftWdlF~~aG~~~~~~~~~~  491 (616)
T COG3211         413 ATPMDRPEWIAVNPGTGEVYFTLTNNGKRSDD-AANPRAKNGYGQIVRWIPATGDHTDTKFTWDLFVEAGNPSVLEGGAS  491 (616)
T ss_pred             CccccCccceeecCCcceEEEEeCCCCccccc-cCCCcccccccceEEEecCCCCccCccceeeeeeecCCccccccccc
Confidence            357889999999997 7999987663211000 000111234588888887765       3333321        1   


Q ss_pred             -------CCCcceEEEcCCCCEEEEEe
Q 026389          217 -------LFFANGVALSKDEDYLVVCE  236 (239)
Q Consensus       217 -------l~~pnGia~s~dg~~lyvad  236 (239)
                             +..|.+|+|++.|+ |+|++
T Consensus       492 ~~~~~~~f~~PDnl~fD~~Gr-LWi~T  517 (616)
T COG3211         492 ANINANWFNSPDNLAFDPWGR-LWIQT  517 (616)
T ss_pred             cCcccccccCCCceEECCCCC-EEEEe
Confidence                   44599999999999 45543

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=96.46  E-value=0.082  Score=51.38  Aligned_cols=125  Identities=14%  Similarity=0.132  Sum_probs=78.3

Q ss_pred             CCEEEEeCCCeEEEEec-CCcEEEeeeccCcCccCeEEcCCCCEEEEeCCC-CeEEEc-cCC--ceEEecccCCcccccc
Q 026389           88 GVLYTATRDGWIKRLHK-NGTWENWKLIGGDTLLGITTTQENEILVCDADK-GLLKVT-EEG--VTVLASHVNGSRINLA  162 (239)
Q Consensus        88 G~ly~~~~~g~I~~~~~-~G~~~~~~~~~~~p~~Gl~~d~~G~L~v~d~~~-g~~~v~-~~g--~~~l~~~~~g~~~~~p  162 (239)
                      +.+.+++.++.|.++.. +++.........-|..-++++.+|+..++.+.. .+..++ .++  ..++... ++.    .
T Consensus        67 ~~f~~~s~~~tv~~y~fps~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh-~ap----V  141 (933)
T KOG1274|consen   67 NHFLTGSEQNTVLRYKFPSGEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGH-DAP----V  141 (933)
T ss_pred             cceEEeeccceEEEeeCCCCCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeeccc-CCc----e
Confidence            35667788999999874 444332222223344378999999877776554 343444 444  4444332 221    3


Q ss_pred             ccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecCCCCCc---------ceEEEcCCCCEEE
Q 026389          163 DDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFA---------NGVALSKDEDYLV  233 (239)
Q Consensus       163 n~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~~l~~p---------nGia~s~dg~~ly  233 (239)
                      -.+.++|+|.+..+.+-                 +|.|+.||.+++.+...++++..-         +=++|+|+|.++.
T Consensus       142 l~l~~~p~~~fLAvss~-----------------dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la  204 (933)
T KOG1274|consen  142 LQLSYDPKGNFLAVSSC-----------------DGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLA  204 (933)
T ss_pred             eeeeEcCCCCEEEEEec-----------------CceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEE
Confidence            57899999988776554                 699999999877765555543221         3367889866554


Q ss_pred             E
Q 026389          234 V  234 (239)
Q Consensus       234 v  234 (239)
                      +
T Consensus       205 ~  205 (933)
T KOG1274|consen  205 V  205 (933)
T ss_pred             e
Confidence            4

>PLN00181 protein SPA1-RELATED; Provisional

Probab=96.45  E-value=0.29  Score=48.22  Aligned_cols=133  Identities=14%  Similarity=0.079  Sum_probs=75.5

Q ss_pred             cceEEEcCCCCEE-EEeCCCeEEEEecCC-----cE---EEe-eeccCcCccCeEEcCC-CCEEEEeCCCCeEEEc--cC
Q 026389           79 PEDVCVDRNGVLY-TATRDGWIKRLHKNG-----TW---ENW-KLIGGDTLLGITTTQE-NEILVCDADKGLLKVT--EE  145 (239)
Q Consensus        79 Pe~ia~d~~G~ly-~~~~~g~I~~~~~~G-----~~---~~~-~~~~~~p~~Gl~~d~~-G~L~v~d~~~g~~~v~--~~  145 (239)
                      -.+++|+++|.++ ++..++.|..|+.+.     ..   ... ........ ++++.+. ++.+++....|.+++.  ..
T Consensus       486 V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~-~l~~~~~~~~~las~~~Dg~v~lWd~~~  564 (793)
T PLN00181        486 VCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLS-GICWNSYIKSQVASSNFEGVVQVWDVAR  564 (793)
T ss_pred             EEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEecccCcee-eEEeccCCCCEEEEEeCCCeEEEEECCC
Confidence            3458999998866 666899999987432     10   000 11112334 6777653 5566665567777775  33


Q ss_pred             C--ceEEecccCCccccccccEEEcC-CCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecCCCCCcce
Q 026389          146 G--VTVLASHVNGSRINLADDLIAAT-DGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANG  222 (239)
Q Consensus       146 g--~~~l~~~~~g~~~~~pn~l~vd~-dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~~l~~pnG  222 (239)
                      +  ...+...  .   .....+++++ +|.+++|-+.                 .|.|..||..+++.............
T Consensus       565 ~~~~~~~~~H--~---~~V~~l~~~p~~~~~L~Sgs~-----------------Dg~v~iWd~~~~~~~~~~~~~~~v~~  622 (793)
T PLN00181        565 SQLVTEMKEH--E---KRVWSIDYSSADPTLLASGSD-----------------DGSVKLWSINQGVSIGTIKTKANICC  622 (793)
T ss_pred             CeEEEEecCC--C---CCEEEEEEcCCCCCEEEEEcC-----------------CCEEEEEECCCCcEEEEEecCCCeEE
Confidence            4  2222211  1   2367899986 6888777654                 47788888776554333222233445


Q ss_pred             EEEc-CCCCEEEE
Q 026389          223 VALS-KDEDYLVV  234 (239)
Q Consensus       223 ia~s-~dg~~lyv  234 (239)
                      ++|. ++|+.+.+
T Consensus       623 v~~~~~~g~~lat  635 (793)
T PLN00181        623 VQFPSESGRSLAF  635 (793)
T ss_pred             EEEeCCCCCEEEE
Confidence            5553 34554443

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=96.43  E-value=0.15  Score=44.20  Aligned_cols=145  Identities=12%  Similarity=0.093  Sum_probs=83.8

Q ss_pred             CCcceEEEcCCC-------------CEEEEeCCCeEEEEecCC-------cEEEeee-ccCcCccCeEEcCC---CCEEE
Q 026389           77 NGPEDVCVDRNG-------------VLYTATRDGWIKRLHKNG-------TWENWKL-IGGDTLLGITTTQE---NEILV  132 (239)
Q Consensus        77 ~gPe~ia~d~~G-------------~ly~~~~~g~I~~~~~~G-------~~~~~~~-~~~~p~~Gl~~d~~---G~L~v  132 (239)
                      ..|.|+++....             +..+++.+|+|.-|.+.-       ....+.. ..+..+.|+++...   ..||.
T Consensus        77 ~~PTGiVfN~~~~F~vt~~g~~~~a~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYa  156 (336)
T TIGR03118        77 GTPTGQVFNGSDTFVVSGEGITGPSRFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYA  156 (336)
T ss_pred             CCccEEEEeCCCceEEcCCCcccceeEEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEE
Confidence            357777776321             234666888998887521       1222211 12333337777632   37999


Q ss_pred             EeCCCCeEEEccCC-ceE-EecccCCc--cc-cccccEEEcCCCCEEEEeCCCCcCcccc-cccceeecCCceEEEEeCC
Q 026389          133 CDADKGLLKVTEEG-VTV-LASHVNGS--RI-NLADDLIAATDGSIYFSVASTKFGLHNW-GLDLLEAKPHGKLLKYDPS  206 (239)
Q Consensus       133 ~d~~~g~~~v~~~g-~~~-l~~~~~g~--~~-~~pn~l~vd~dG~iy~td~~~~~~~~~~-~~~~~e~~~~g~v~~~d~~  206 (239)
                      +|...+.+.+.+.. ..+ +...+.+.  |. ..|-+|..- .|+||||=..     ++- ..+-+.+.+.|.|-+||++
T Consensus       157 adF~~g~IDVFd~~f~~~~~~g~F~DP~iPagyAPFnIqni-g~~lyVtYA~-----qd~~~~d~v~G~G~G~VdvFd~~  230 (336)
T TIGR03118       157 ANFRQGRIDVFKGSFRPPPLPGSFIDPALPAGYAPFNVQNL-GGTLYVTYAQ-----QDADRNDEVAGAGLGYVNVFTLN  230 (336)
T ss_pred             eccCCCceEEecCccccccCCCCccCCCCCCCCCCcceEEE-CCeEEEEEEe-----cCCcccccccCCCcceEEEEcCC
Confidence            99988888776333 211 11222221  21 235555433 5799998332     211 1223345678999999999


Q ss_pred             CCeEEEecC--CCCCcceEEEcC
Q 026389          207 LNETSILLD--SLFFANGVALSK  227 (239)
Q Consensus       207 ~~~~~~~~~--~l~~pnGia~s~  227 (239)
                      +.-++.+..  .|..|.||++.|
T Consensus       231 G~l~~r~as~g~LNaPWG~a~AP  253 (336)
T TIGR03118       231 GQLLRRVASSGRLNAPWGLAIAP  253 (336)
T ss_pred             CcEEEEeccCCcccCCceeeeCh
Confidence            766776754  378899999976

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=96.42  E-value=0.17  Score=43.08  Aligned_cols=143  Identities=15%  Similarity=0.134  Sum_probs=92.0

Q ss_pred             eEeccCCcCCcceEEEcCCCCEEE-EeCCCeEEEEecC-Cc-EEEeeeccCcCccCeEEcCCCCEEEEeCCCCeEEEc-c
Q 026389           69 TRLGEGILNGPEDVCVDRNGVLYT-ATRDGWIKRLHKN-GT-WENWKLIGGDTLLGITTTQENEILVCDADKGLLKVT-E  144 (239)
Q Consensus        69 ~~l~~g~~~gPe~ia~d~~G~ly~-~~~~g~I~~~~~~-G~-~~~~~~~~~~p~~Gl~~d~~G~L~v~d~~~g~~~v~-~  144 (239)
                      .+...|--..-++++..+||+..+ ++.|+.+..||.. |+ .+.|......-+ ++++++|++-+|+.+....+.+. -
T Consensus        56 ~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVl-sva~s~dn~qivSGSrDkTiklwnt  134 (315)
T KOG0279|consen   56 VRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVL-SVAFSTDNRQIVSGSRDKTIKLWNT  134 (315)
T ss_pred             eeeeeccceEecceEEccCCceEEeccccceEEEEEecCCcEEEEEEecCCceE-EEEecCCCceeecCCCcceeeeeee
Confidence            333444334456788889998774 5689999999964 44 344554455567 99999999988887776666665 2


Q ss_pred             CC--ceEEecccCCccccccccEEEcCCC-CEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEec-CCCCCc
Q 026389          145 EG--VTVLASHVNGSRINLADDLIAATDG-SIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILL-DSLFFA  220 (239)
Q Consensus       145 ~g--~~~l~~~~~g~~~~~pn~l~vd~dG-~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~-~~l~~p  220 (239)
                      -|  .-.+.+.  + .-...+-+.+.|+- +.|+...+  +              .+.|-.+|.++-+++... ..-.+-
T Consensus       135 ~g~ck~t~~~~--~-~~~WVscvrfsP~~~~p~Ivs~s--~--------------DktvKvWnl~~~~l~~~~~gh~~~v  195 (315)
T KOG0279|consen  135 LGVCKYTIHED--S-HREWVSCVRFSPNESNPIIVSAS--W--------------DKTVKVWNLRNCQLRTTFIGHSGYV  195 (315)
T ss_pred             cccEEEEEecC--C-CcCcEEEEEEcCCCCCcEEEEcc--C--------------CceEEEEccCCcchhhccccccccE
Confidence            33  2222211  1 13467778888885 55555544  2              466777888766654433 334567


Q ss_pred             ceEEEcCCCCE
Q 026389          221 NGVALSKDEDY  231 (239)
Q Consensus       221 nGia~s~dg~~  231 (239)
                      |-+++||||..
T Consensus       196 ~t~~vSpDGsl  206 (315)
T KOG0279|consen  196 NTVTVSPDGSL  206 (315)
T ss_pred             EEEEECCCCCE
Confidence            88999999984

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=96.39  E-value=0.043  Score=49.07  Aligned_cols=135  Identities=15%  Similarity=0.114  Sum_probs=76.5

Q ss_pred             ceEEEcCCCCEEEEe-CCCeEEEEecC-CcE-EEeeec-cCcCccCeEEcCCCCEEEEe-CCCCeEEEccCCceEEeccc
Q 026389           80 EDVCVDRNGVLYTAT-RDGWIKRLHKN-GTW-ENWKLI-GGDTLLGITTTQENEILVCD-ADKGLLKVTEEGVTVLASHV  154 (239)
Q Consensus        80 e~ia~d~~G~ly~~~-~~g~I~~~~~~-G~~-~~~~~~-~~~p~~Gl~~d~~G~L~v~d-~~~g~~~v~~~g~~~l~~~~  154 (239)
                      .=|.|+||.+-.+++ .+..+..||.+ |.. ..+... +..+- ..++-+||.=+|+. ...+++..+.||..  ...-
T Consensus       273 ~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~-sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~--~~~W  349 (519)
T KOG0293|consen  273 SYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVS-SCAWCPDGFRFVTGSPDRTIIMWDLDGNI--LGNW  349 (519)
T ss_pred             EEEEECCCCCeEEecCchHheeeccCCcchhhhhcccCcCCCcc-eeEEccCCceeEecCCCCcEEEecCCcch--hhcc
Confidence            347888877655544 55567777753 443 222222 22333 67788999655554 44566677767611  1122


Q ss_pred             CCccccccccEEEcCCC-CEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecCCCCCcceEEEcCCCCEEE
Q 026389          155 NGSRINLADDLIAATDG-SIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLV  233 (239)
Q Consensus       155 ~g~~~~~pn~l~vd~dG-~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~~l~~pnGia~s~dg~~ly  233 (239)
                      +|.+.....|+++.+|| .++.....                  .++..|+..+..-+.++..-..-...++|.||++++
T Consensus       350 ~gvr~~~v~dlait~Dgk~vl~v~~d------------------~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~L  411 (519)
T KOG0293|consen  350 EGVRDPKVHDLAITYDGKYVLLVTVD------------------KKIRLYNREARVDRGLISEEQPITSFSISKDGKLAL  411 (519)
T ss_pred             cccccceeEEEEEcCCCcEEEEEecc------------------cceeeechhhhhhhccccccCceeEEEEcCCCcEEE
Confidence            34444457899999999 45554432                  345555544322222333333446678888888776


Q ss_pred             EE
Q 026389          234 VC  235 (239)
Q Consensus       234 va  235 (239)
                      |+
T Consensus       412 vn  413 (519)
T KOG0293|consen  412 VN  413 (519)
T ss_pred             EE
Confidence            65

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=96.36  E-value=0.28  Score=45.58  Aligned_cols=112  Identities=16%  Similarity=0.211  Sum_probs=63.3

Q ss_pred             CCCEEEEeCCCeEEEEec-CCcEEEeeeccC----------cCccCeEEcCCCCEEEEeCCCCeEEEc-cCCceEEeccc
Q 026389           87 NGVLYTATRDGWIKRLHK-NGTWENWKLIGG----------DTLLGITTTQENEILVCDADKGLLKVT-EEGVTVLASHV  154 (239)
Q Consensus        87 ~G~ly~~~~~g~I~~~~~-~G~~~~~~~~~~----------~p~~Gl~~d~~G~L~v~d~~~g~~~v~-~~g~~~l~~~~  154 (239)
                      +|++|+++.+++|+.+|. +|+.. |.....          ... |+++..++++|+.+....++.+| .+|..+.....
T Consensus        61 ~g~vy~~~~~g~l~AlD~~tG~~~-W~~~~~~~~~~~~~~~~~~-g~~~~~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~  138 (488)
T cd00216          61 DGDMYFTTSHSALFALDAATGKVL-WRYDPKLPADRGCCDVVNR-GVAYWDPRKVFFGTFDGRLVALDAETGKQVWKFGN  138 (488)
T ss_pred             CCEEEEeCCCCcEEEEECCCChhh-ceeCCCCCccccccccccC-CcEEccCCeEEEecCCCeEEEEECCCCCEeeeecC
Confidence            789999999999999996 56532 211110          122 44443337999998877788888 57733222111


Q ss_pred             CCc---cccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeE
Q 026389          155 NGS---RINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNET  210 (239)
Q Consensus       155 ~g~---~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~  210 (239)
                      .+.   ....-....++ +|.+|+......+.         .....|.|+.+|.++|+.
T Consensus       139 ~~~~~~~~~i~ssP~v~-~~~v~vg~~~~~~~---------~~~~~g~v~alD~~TG~~  187 (488)
T cd00216         139 NDQVPPGYTMTGAPTIV-KKLVIIGSSGAEFF---------ACGVRGALRAYDVETGKL  187 (488)
T ss_pred             CCCcCcceEecCCCEEE-CCEEEEeccccccc---------cCCCCcEEEEEECCCCce
Confidence            111   00011233444 37788765432110         011257899999988875

The alignment model contains an 8-bladed beta-propeller.

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=96.36  E-value=0.2  Score=43.47  Aligned_cols=100  Identities=22%  Similarity=0.315  Sum_probs=60.8

Q ss_pred             CEEEEe-CCCeEEEEecCCcE-E---Eee----eccCcCccCeEEcCCCCEEEEeCC-------------CCeEEEc-cC
Q 026389           89 VLYTAT-RDGWIKRLHKNGTW-E---NWK----LIGGDTLLGITTTQENEILVCDAD-------------KGLLKVT-EE  145 (239)
Q Consensus        89 ~ly~~~-~~g~I~~~~~~G~~-~---~~~----~~~~~p~~Gl~~d~~G~L~v~d~~-------------~g~~~v~-~~  145 (239)
                      .||.++ ++++|-.+|..=+. .   .|.    ..+-.|. ++.. -.|+|||+-+.             .|.+.+. .+
T Consensus       153 ~LYaadF~~g~IDVFd~~f~~~~~~g~F~DP~iPagyAPF-nIqn-ig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~  230 (336)
T TIGR03118       153 YLYAANFRQGRIDVFKGSFRPPPLPGSFIDPALPAGYAPF-NVQN-LGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLN  230 (336)
T ss_pred             eEEEeccCCCceEEecCccccccCCCCccCCCCCCCCCCc-ceEE-ECCeEEEEEEecCCcccccccCCCcceEEEEcCC
Confidence            566555 66777776532111 0   011    1234577 7765 35799997532             2345443 56


Q ss_pred             C--ceEEecccCCccccccccEEEcCC------CCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeE
Q 026389          146 G--VTVLASHVNGSRINLADDLIAATD------GSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNET  210 (239)
Q Consensus       146 g--~~~l~~~~~g~~~~~pn~l~vd~d------G~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~  210 (239)
                      |  ++.+.   .+.+++.|.+|+++|.      |.|.|.+..                 .|+|-.||+.+++.
T Consensus       231 G~l~~r~a---s~g~LNaPWG~a~APa~FG~~sg~lLVGNFG-----------------DG~InaFD~~sG~~  283 (336)
T TIGR03118       231 GQLLRRVA---SSGRLNAPWGLAIAPESFGSLSGALLVGNFG-----------------DGTINAYDPQSGAQ  283 (336)
T ss_pred             CcEEEEec---cCCcccCCceeeeChhhhCCCCCCeEEeecC-----------------CceeEEecCCCCce
Confidence            6  44443   3557999999999873      456666643                 69999999986653

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=96.31  E-value=0.097  Score=45.48  Aligned_cols=108  Identities=16%  Similarity=0.174  Sum_probs=66.3

Q ss_pred             cCcCccCeEEcCCC-CEEEEeCCCCe--EEEc-cCC-ceEEecccCCccccccccEEEcCCCC-EEEEeCCCCcCccccc
Q 026389          115 GGDTLLGITTTQEN-EILVCDADKGL--LKVT-EEG-VTVLASHVNGSRINLADDLIAATDGS-IYFSVASTKFGLHNWG  188 (239)
Q Consensus       115 ~~~p~~Gl~~d~~G-~L~v~d~~~g~--~~v~-~~g-~~~l~~~~~g~~~~~pn~l~vd~dG~-iy~td~~~~~~~~~~~  188 (239)
                      ..|.+ |+++++.. ..++.-..-|.  +.+| .+| ........++.-|  -=-.++++||+ +|.|+..  |      
T Consensus         4 P~RgH-~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHF--yGHg~fs~dG~~LytTEnd--~------   72 (305)
T PF07433_consen    4 PARGH-GVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHF--YGHGVFSPDGRLLYTTEND--Y------   72 (305)
T ss_pred             Ccccc-ceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEE--ecCEEEcCCCCEEEEeccc--c------
Confidence            45777 88888754 33333333333  3456 466 3333333344322  22468889995 6666654  2      


Q ss_pred             ccceeecCCceEEEEeCCCC--eEEEecCCCCCcceEEEcCCCCEEEEEeCC
Q 026389          189 LDLLEAKPHGKLLKYDPSLN--ETSILLDSLFFANGVALSKDEDYLVVCETF  238 (239)
Q Consensus       189 ~~~~e~~~~g~v~~~d~~~~--~~~~~~~~l~~pnGia~s~dg~~lyvadt~  238 (239)
                           ..+.|.|-+||...+  ++..+.+.--.|.-|.+.|||++|+|++-+
T Consensus        73 -----~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGG  119 (305)
T PF07433_consen   73 -----ETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGG  119 (305)
T ss_pred             -----CCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCC
Confidence                 234699999998722  233344556679999999999999999753

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=96.29  E-value=0.021  Score=33.83  Aligned_cols=41  Identities=22%  Similarity=0.298  Sum_probs=31.7

Q ss_pred             CCC-CEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecCCCCCcceEEEc
Q 026389          169 TDG-SIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALS  226 (239)
Q Consensus       169 ~dG-~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~~l~~pnGia~s  226 (239)
                      |+| ++|+++..                 .+.|..+|+.+++...-+.....|.+++|+
T Consensus         1 pd~~~lyv~~~~-----------------~~~v~~id~~~~~~~~~i~vg~~P~~i~~~   42 (42)
T TIGR02276         1 PDGTKLYVTNSG-----------------SNTVSVIDTATNKVIATIPVGGYPFGVAVS   42 (42)
T ss_pred             CCCCEEEEEeCC-----------------CCEEEEEECCCCeEEEEEECCCCCceEEeC
Confidence            355 69999864                 578999999888776655556889999985

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=96.20  E-value=0.094  Score=47.92  Aligned_cols=133  Identities=18%  Similarity=0.148  Sum_probs=75.6

Q ss_pred             EEcCCCC--EEEEe--CC-CeEEEEecC-CcEEEeeeccCcCccCeEEcCCCC-EEEEeCCC---CeEEEccCC--ceEE
Q 026389           83 CVDRNGV--LYTAT--RD-GWIKRLHKN-GTWENWKLIGGDTLLGITTTQENE-ILVCDADK---GLLKVTEEG--VTVL  150 (239)
Q Consensus        83 a~d~~G~--ly~~~--~~-g~I~~~~~~-G~~~~~~~~~~~p~~Gl~~d~~G~-L~v~d~~~---g~~~v~~~g--~~~l  150 (239)
                      +|.+++.  .|+..  .. .+|+.++.+ |+........+.-. .-+|.+||+ |.++....   .++..|.++  ...|
T Consensus       199 ~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~~-~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~L  277 (425)
T COG0823         199 AWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNNG-APAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPRL  277 (425)
T ss_pred             ccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCccC-CccCCCCCCEEEEEECCCCCccEEEEcCCCCcceec
Confidence            5555553  34433  22 357777753 44444444444444 566778884 44443333   344555444  3332


Q ss_pred             ecccCCccccccccEEEcCCC-CEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecCCCCCcceEEEcCCC
Q 026389          151 ASHVNGSRINLADDLIAATDG-SIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDE  229 (239)
Q Consensus       151 ~~~~~g~~~~~pn~l~vd~dG-~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~~l~~pnGia~s~dg  229 (239)
                      . ...|  .+  ..=.+.||| .|+|+....               +.-+||++|+++++++.+......-.--.++|||
T Consensus       278 t-~~~g--i~--~~Ps~spdG~~ivf~Sdr~---------------G~p~I~~~~~~g~~~~riT~~~~~~~~p~~SpdG  337 (425)
T COG0823         278 T-NGFG--IN--TSPSWSPDGSKIVFTSDRG---------------GRPQIYLYDLEGSQVTRLTFSGGGNSNPVWSPDG  337 (425)
T ss_pred             c-cCCc--cc--cCccCCCCCCEEEEEeCCC---------------CCcceEEECCCCCceeEeeccCCCCcCccCCCCC
Confidence            2 2222  11  144667899 577764331               1248999999988887777666655567789999


Q ss_pred             CEEEEEe
Q 026389          230 DYLVVCE  236 (239)
Q Consensus       230 ~~lyvad  236 (239)
                      +++.+..
T Consensus       338 ~~i~~~~  344 (425)
T COG0823         338 DKIVFES  344 (425)
T ss_pred             CEEEEEe
Confidence            9887654

>TIGR03032 conserved hypothetical protein TIGR03032

Probab=96.18  E-value=0.021  Score=49.54  Aligned_cols=61  Identities=16%  Similarity=0.243  Sum_probs=49.6

Q ss_pred             ceEeccCCcCCcceEEEcCCCCEEEEe-CCCeEEEEecC-CcEEEeeeccCcCccCeEEcCCCCEEEE
Q 026389           68 VTRLGEGILNGPEDVCVDRNGVLYTAT-RDGWIKRLHKN-GTWENWKLIGGDTLLGITTTQENEILVC  133 (239)
Q Consensus        68 ~~~l~~g~~~gPe~ia~d~~G~ly~~~-~~g~I~~~~~~-G~~~~~~~~~~~p~~Gl~~d~~G~L~v~  133 (239)
                      -+.+.+| +.-||+..|. +|+||+.+ ..|+|.++|++ |+.+......+.|. ||.+.  |++++.
T Consensus       195 ~evl~~G-LsmPhSPRWh-dgrLwvldsgtGev~~vD~~~G~~e~Va~vpG~~r-GL~f~--G~llvV  257 (335)
T TIGR03032       195 GEVVASG-LSMPHSPRWY-QGKLWLLNSGRGELGYVDPQAGKFQPVAFLPGFTR-GLAFA--GDFAFV  257 (335)
T ss_pred             CCEEEcC-ccCCcCCcEe-CCeEEEEECCCCEEEEEcCCCCcEEEEEECCCCCc-cccee--CCEEEE
Confidence            3556666 6778887876 78999877 88999999986 99888888899999 99997  766544

This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=96.18  E-value=0.13  Score=50.65  Aligned_cols=137  Identities=17%  Similarity=0.168  Sum_probs=79.6

Q ss_pred             CcceEEEcCCCC-EEEEeCCCeEEEEecC-----------C---cEEEe------eeccCcCccCeEEcCCCCEEEEeCC
Q 026389           78 GPEDVCVDRNGV-LYTATRDGWIKRLHKN-----------G---TWENW------KLIGGDTLLGITTTQENEILVCDAD  136 (239)
Q Consensus        78 gPe~ia~d~~G~-ly~~~~~g~I~~~~~~-----------G---~~~~~------~~~~~~p~~Gl~~d~~G~L~v~d~~  136 (239)
                      .-.++-|.+||. +++|+.|.-|..|...           |   .++.|      ....+.-. .+.+++++.++|.-+.
T Consensus        71 sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~-Dv~Wsp~~~~lvS~s~  149 (942)
T KOG0973|consen   71 SVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVL-DVNWSPDDSLLVSVSL  149 (942)
T ss_pred             ceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccc-eeccCCCccEEEEecc
Confidence            344567999985 5566666555444432           1   12222      22234455 7888899999998777


Q ss_pred             CCeEEEc-c-CC--ceEEecccCCccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEE
Q 026389          137 KGLLKVT-E-EG--VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSI  212 (239)
Q Consensus       137 ~g~~~v~-~-~g--~~~l~~~~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~  212 (239)
                      .+.+.+. . ..  .+++.    |. ...+-|+++||-|..+.|.+.                 ...|..|....-.++.
T Consensus       150 DnsViiwn~~tF~~~~vl~----~H-~s~VKGvs~DP~Gky~ASqsd-----------------Drtikvwrt~dw~i~k  207 (942)
T KOG0973|consen  150 DNSVIIWNAKTFELLKVLR----GH-QSLVKGVSWDPIGKYFASQSD-----------------DRTLKVWRTSDWGIEK  207 (942)
T ss_pred             cceEEEEccccceeeeeee----cc-cccccceEECCccCeeeeecC-----------------CceEEEEEcccceeeE
Confidence            6666665 2 22  33332    21 135779999999997776654                 3445555533333444


Q ss_pred             ecCCC-------CCcceEEEcCCCCEEEEEeC
Q 026389          213 LLDSL-------FFANGVALSKDEDYLVVCET  237 (239)
Q Consensus       213 ~~~~l-------~~pnGia~s~dg~~lyvadt  237 (239)
                      .++..       .+-.=+.+||||++|-+...
T Consensus       208 ~It~pf~~~~~~T~f~RlSWSPDG~~las~nA  239 (942)
T KOG0973|consen  208 SITKPFEESPLTTFFLRLSWSPDGHHLASPNA  239 (942)
T ss_pred             eeccchhhCCCcceeeecccCCCcCeecchhh
Confidence            44331       12233678999998866543

>COG1520 FOG: WD40-like repeat [Function unknown]

Probab=96.18  E-value=0.068  Score=47.65  Aligned_cols=106  Identities=24%  Similarity=0.326  Sum_probs=65.1

Q ss_pred             EcCCCCEEEEeCCCeEEEEecCCcEEEeeeccC----cCccCeEEcCCCCEEEEeCCCCeEEEcc-CCceEEecccCCcc
Q 026389           84 VDRNGVLYTATRDGWIKRLHKNGTWENWKLIGG----DTLLGITTTQENEILVCDADKGLLKVTE-EGVTVLASHVNGSR  158 (239)
Q Consensus        84 ~d~~G~ly~~~~~g~I~~~~~~G~~~~~~~~~~----~p~~Gl~~d~~G~L~v~d~~~g~~~v~~-~g~~~l~~~~~g~~  158 (239)
                      .+.+|++|+...+|+|+.+++++-...|.....    ... +-.+..+|+||+.+....++.++. +|.........+. 
T Consensus        65 ~~~dg~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~-~~~~~~~G~i~~g~~~g~~y~ld~~~G~~~W~~~~~~~-  142 (370)
T COG1520          65 ADGDGTVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLS-GPILGSDGKIYVGSWDGKLYALDASTGTLVWSRNVGGS-  142 (370)
T ss_pred             EeeCCeEEEecCCCcEEEEeCCCCcEEecccCcCcceecc-CceEEeCCeEEEecccceEEEEECCCCcEEEEEecCCC-
Confidence            556899999999999999998654434532221    222 222334899999998766778885 8833332222221 


Q ss_pred             ccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeE
Q 026389          159 INLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNET  210 (239)
Q Consensus       159 ~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~  210 (239)
                      +. ..+-.+-.+|.+|+...                  .|.++.+|.++|+.
T Consensus       143 ~~-~~~~~v~~~~~v~~~s~------------------~g~~~al~~~tG~~  175 (370)
T COG1520         143 PY-YASPPVVGDGTVYVGTD------------------DGHLYALNADTGTL  175 (370)
T ss_pred             eE-EecCcEEcCcEEEEecC------------------CCeEEEEEccCCcE
Confidence            11 22334555788888742                  35677777776654

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=96.15  E-value=0.1  Score=46.66  Aligned_cols=149  Identities=15%  Similarity=0.158  Sum_probs=90.6

Q ss_pred             cCCcceEEEcCCC-CEEEEeCCCeEEEEecCCcE-EEeeec-cCcCccCeEEcCCCC-EEEEeCCCCeEEEc-cCCceE-
Q 026389           76 LNGPEDVCVDRNG-VLYTATRDGWIKRLHKNGTW-ENWKLI-GGDTLLGITTTQENE-ILVCDADKGLLKVT-EEGVTV-  149 (239)
Q Consensus        76 ~~gPe~ia~d~~G-~ly~~~~~g~I~~~~~~G~~-~~~~~~-~~~p~~Gl~~d~~G~-L~v~d~~~g~~~v~-~~g~~~-  149 (239)
                      ...+.+.+|-||| ++.+|+.|+.|..++-||+. ..|... ..+-. .+++..||+ ++.......+..++ ++.+.. 
T Consensus       312 ~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~~W~gvr~~~v~-dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~  390 (519)
T KOG0293|consen  312 GFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNILGNWEGVRDPKVH-DLAITYDGKYVLLVTVDKKIRLYNREARVDRG  390 (519)
T ss_pred             CCCcceeEEccCCceeEecCCCCcEEEecCCcchhhcccccccceeE-EEEEcCCCcEEEEEecccceeeechhhhhhhc
Confidence            3578889999998 56688899999999998853 333221 13456 888888995 55555444444333 222111 


Q ss_pred             EecccCCccccccccEEEcCCCCEEEEeCCCC----cCccc-----------------------cccc-ceeecCCceEE
Q 026389          150 LASHVNGSRINLADDLIAATDGSIYFSVASTK----FGLHN-----------------------WGLD-LLEAKPHGKLL  201 (239)
Q Consensus       150 l~~~~~g~~~~~pn~l~vd~dG~iy~td~~~~----~~~~~-----------------------~~~~-~~e~~~~g~v~  201 (239)
                      +...  ..+   ...+.+..||.+...+-...    |.+++                       .... ++.+...++||
T Consensus       391 lise--~~~---its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvy  465 (519)
T KOG0293|consen  391 LISE--EQP---ITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVY  465 (519)
T ss_pred             cccc--cCc---eeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEE
Confidence            2222  112   35677888887766654321    22211                       0112 33567789999


Q ss_pred             EEeCCCCeEEEecCCC-CCcceEEEcCCCC
Q 026389          202 KYDPSLNETSILLDSL-FFANGVALSKDED  230 (239)
Q Consensus       202 ~~d~~~~~~~~~~~~l-~~pnGia~s~dg~  230 (239)
                      .++..++++...+.|- ..-|-|+++|...
T Consensus       466 IWhr~sgkll~~LsGHs~~vNcVswNP~~p  495 (519)
T KOG0293|consen  466 IWHRISGKLLAVLSGHSKTVNCVSWNPADP  495 (519)
T ss_pred             EEEccCCceeEeecCCcceeeEEecCCCCH
Confidence            9999988876666553 3457777776443

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=96.11  E-value=0.57  Score=42.46  Aligned_cols=96  Identities=11%  Similarity=0.051  Sum_probs=57.8

Q ss_pred             EEcCCCCEEEEeCCCeEEEEecCCc--EEEeeec-cCcCccCeEEcCCCCEEEEeCCCCeEEEccCC-ce---EEecccC
Q 026389           83 CVDRNGVLYTATRDGWIKRLHKNGT--WENWKLI-GGDTLLGITTTQENEILVCDADKGLLKVTEEG-VT---VLASHVN  155 (239)
Q Consensus        83 a~d~~G~ly~~~~~g~I~~~~~~G~--~~~~~~~-~~~p~~Gl~~d~~G~L~v~d~~~g~~~v~~~g-~~---~l~~~~~  155 (239)
                      ...++|.+++....|.+++-..+|+  |+..... ...-. ++.+..+|.+|++....+++.-..+| ..   .+.....
T Consensus       245 ~~~~dG~~~~vg~~G~~~~s~d~G~~~W~~~~~~~~~~l~-~v~~~~dg~l~l~g~~G~l~~S~d~G~~~~~~~f~~~~~  323 (398)
T PLN00033        245 NRSPDGDYVAVSSRGNFYLTWEPGQPYWQPHNRASARRIQ-NMGWRADGGLWLLTRGGGLYVSKGTGLTEEDFDFEEADI  323 (398)
T ss_pred             EEcCCCCEEEEECCccEEEecCCCCcceEEecCCCcccee-eeeEcCCCCEEEEeCCceEEEecCCCCcccccceeeccc
Confidence            4456777776666777777655564  3443332 23334 88888999999988766666555555 21   2221111


Q ss_pred             CccccccccEEEcCCCCEEEEeCC
Q 026389          156 GSRINLADDLIAATDGSIYFSVAS  179 (239)
Q Consensus       156 g~~~~~pn~l~vd~dG~iy~td~~  179 (239)
                      ......+.++.+.+++.+|++-..
T Consensus       324 ~~~~~~l~~v~~~~d~~~~a~G~~  347 (398)
T PLN00033        324 KSRGFGILDVGYRSKKEAWAAGGS  347 (398)
T ss_pred             CCCCcceEEEEEcCCCcEEEEECC
Confidence            111123678888888998887654

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=96.10  E-value=0.13  Score=47.22  Aligned_cols=121  Identities=17%  Similarity=0.152  Sum_probs=76.1

Q ss_pred             CCCCCcccccceEecc----CCcCCcceEEEcCCCCEE-EEeCCCeEEEEecCCcEEE-----e--eeccCcCccCeEEc
Q 026389           58 LIPTTSDIQSVTRLGE----GILNGPEDVCVDRNGVLY-TATRDGWIKRLHKNGTWEN-----W--KLIGGDTLLGITTT  125 (239)
Q Consensus        58 ~~~~n~~l~~~~~l~~----g~~~gPe~ia~d~~G~ly-~~~~~g~I~~~~~~G~~~~-----~--~~~~~~p~~Gl~~d  125 (239)
                      +|..|+...+.+.|..    |.-.-|...+|+++|.++ .++.||.|-.|+. |.+.+     +  +...+.-.+.++|.
T Consensus       295 iWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~-~~~~v~p~~~vk~AH~~g~~Itsi~FS  373 (641)
T KOG0772|consen  295 IWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDK-GSRTVRPVMKVKDAHLPGQDITSISFS  373 (641)
T ss_pred             EEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeec-CCcccccceEeeeccCCCCceeEEEec
Confidence            5666766666666544    223357789999999887 5669999999985 32211     1  12222222278999


Q ss_pred             CCCCEEEEeCCCCeEEEc-cCC-ceEEecccCCccc-cccccEEEcCCCCEEEEeCCC
Q 026389          126 QENEILVCDADKGLLKVT-EEG-VTVLASHVNGSRI-NLADDLIAATDGSIYFSVAST  180 (239)
Q Consensus       126 ~~G~L~v~d~~~g~~~v~-~~g-~~~l~~~~~g~~~-~~pn~l~vd~dG~iy~td~~~  180 (239)
                      .+|+.+.+-...+.+++. ... .+.|.. ..|-+- .--.++++.|+..|++|..+.
T Consensus       374 ~dg~~LlSRg~D~tLKvWDLrq~kkpL~~-~tgL~t~~~~tdc~FSPd~kli~TGtS~  430 (641)
T KOG0772|consen  374 YDGNYLLSRGFDDTLKVWDLRQFKKPLNV-RTGLPTPFPGTDCCFSPDDKLILTGTSA  430 (641)
T ss_pred             cccchhhhccCCCceeeeeccccccchhh-hcCCCccCCCCccccCCCceEEEecccc
Confidence            999988887777777775 222 222221 111111 113689999999999998774

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=95.96  E-value=0.2  Score=43.08  Aligned_cols=129  Identities=16%  Similarity=0.245  Sum_probs=73.7

Q ss_pred             EEEcCCCCEEEEe-CCCeEEEEecCCcEEEee---eccCcCccCeEEcCCCCEEE-EeCCCCeEEEc-cCCceEEecccC
Q 026389           82 VCVDRNGVLYTAT-RDGWIKRLHKNGTWENWK---LIGGDTLLGITTTQENEILV-CDADKGLLKVT-EEGVTVLASHVN  155 (239)
Q Consensus        82 ia~d~~G~ly~~~-~~g~I~~~~~~G~~~~~~---~~~~~p~~Gl~~d~~G~L~v-~d~~~g~~~v~-~~g~~~l~~~~~  155 (239)
                      +.|+|+|..+++. .|..|+.|+..|.-+.+.   ...+... ++.+.+|++.++ |...+.++..| +.|..+......
T Consensus        53 ~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM-~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h  131 (338)
T KOG0265|consen   53 IKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVM-ELHGMRDGSHILSCGTDKTVRGWDAETGKRIRKHKGH  131 (338)
T ss_pred             EEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeE-eeeeccCCCEEEEecCCceEEEEecccceeeehhccc
Confidence            5788999888554 899999998766433322   2234556 788889997554 55556666667 566222211111


Q ss_pred             CccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecCCCCCcceEEEcCCCC
Q 026389          156 GSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDED  230 (239)
Q Consensus       156 g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~~l~~pnGia~s~dg~  230 (239)
                      .   .+.|-+.....|-..+...+                ..|.+-.||..+++.......-+.-..++|..+++
T Consensus       132 ~---~~vNs~~p~rrg~~lv~Sgs----------------dD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d~s~  187 (338)
T KOG0265|consen  132 T---SFVNSLDPSRRGPQLVCSGS----------------DDGTLKLWDIRKKEAIKTFENKYQLTAVGFKDTSD  187 (338)
T ss_pred             c---ceeeecCccccCCeEEEecC----------------CCceEEEEeecccchhhccccceeEEEEEeccccc
Confidence            1   45677776666755555443                24677777776444333333333334444444433

>PF14517 Tachylectin: Tachylectin; PDB: 1TL2_A

Probab=95.91  E-value=0.38  Score=40.08  Aligned_cols=151  Identities=17%  Similarity=0.172  Sum_probs=77.3

Q ss_pred             cccceEeccCCcCCcceEEEcCCCCEEEEeCCCeEEEEec--CC-c-----EEEeeec-cCcCccCeEEcCCCCEEEEeC
Q 026389           65 IQSVTRLGEGILNGPEDVCVDRNGVLYTATRDGWIKRLHK--NG-T-----WENWKLI-GGDTLLGITTTQENEILVCDA  135 (239)
Q Consensus        65 l~~~~~l~~g~~~gPe~ia~d~~G~ly~~~~~g~I~~~~~--~G-~-----~~~~~~~-~~~p~~Gl~~d~~G~L~v~d~  135 (239)
                      +..+..|+.| ..+=..|+..|+|+||.... +.+++..+  ++ +     -+.+... =.+=. .|.+++.|-||..+.
T Consensus        23 ~~~a~~iG~g-w~~~~~i~~~P~g~lY~I~~-~~lY~~~~~~~~~~~~~~~~~~Ig~g~W~~F~-~i~~d~~G~LYaV~~   99 (229)
T PF14517_consen   23 SDRAITIGSG-WNNFRDIAAGPNGRLYAIRN-DGLYRGSPSSSGGNTWDSGSKQIGDGGWNSFK-FIFFDPTGVLYAVTP   99 (229)
T ss_dssp             HHHSEEEESS--TT-SEEEE-TTS-EEEEET-TEEEEES---STT--HHHH-EEEE-S-GGG-S-EEEE-TTS-EEEEET
T ss_pred             cchhhhcCcc-ccccceEEEcCCceEEEEEC-CceEEecCCccCcccccccCcccccCccccee-EEEecCCccEEEecc
Confidence            4566777775 45667788999999997664 48888732  22 1     1222211 01223 588899999999888


Q ss_pred             CCCeEEEc-c-CC-ceEEe---cccCCccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEE-eCCCC
Q 026389          136 DKGLLKVT-E-EG-VTVLA---SHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKY-DPSLN  208 (239)
Q Consensus       136 ~~g~~~v~-~-~g-~~~l~---~~~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~-d~~~~  208 (239)
                      ...+++.. + ++ .....   +...+..-+..+-+-.+++|.||.-+..                  |++++. .|+.+
T Consensus       100 ~G~lyR~~~~~~~~~~W~~~~~~~iG~~GW~~f~~vfa~~~GvLY~i~~d------------------g~~~~~~~p~~~  161 (229)
T PF14517_consen  100 DGKLYRHPRPTNGSDNWIGGSGKKIGGTGWNDFDAVFAGPNGVLYAITPD------------------GRLYRRYRPDGG  161 (229)
T ss_dssp             T-EEEEES---STT--HHH-HSEEEE-SSGGGEEEEEE-TTS-EEEEETT------------------E-EEEE---SST
T ss_pred             ccceeeccCCCccCcchhhccceecccCCCccceEEEeCCCccEEEEcCC------------------CceEEeCCCCCC
Confidence            65666665 2 33 22211   2221223444677888999999987754                  678887 44432


Q ss_pred             e-------EEEecCCCCCcceEEEcCCCCEEEEEeC
Q 026389          209 E-------TSILLDSLFFANGVALSKDEDYLVVCET  237 (239)
Q Consensus       209 ~-------~~~~~~~l~~pnGia~s~dg~~lyvadt  237 (239)
                      .       ..+...+...+.-|.++++|. ||..++
T Consensus       162 ~~~W~~~s~~v~~~gw~~~~~i~~~~~g~-L~~V~~  196 (229)
T PF14517_consen  162 SDRWLSGSGLVGGGGWDSFHFIFFSPDGN-LWAVKS  196 (229)
T ss_dssp             T--HHHH-EEEESSSGGGEEEEEE-TTS--EEEE-E
T ss_pred             CCccccccceeccCCcccceEEeeCCCCc-EEEEec
Confidence            1       112223444466788888886 554443

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=95.90  E-value=0.073  Score=48.87  Aligned_cols=136  Identities=13%  Similarity=0.155  Sum_probs=78.6

Q ss_pred             ceEEEcCC--CCEEEEeCCCeEEEEecCC---cEEEeeec---cCc--CccCeEEcCCCCEEEEeCCCCeEEEccCC---
Q 026389           80 EDVCVDRN--GVLYTATRDGWIKRLHKNG---TWENWKLI---GGD--TLLGITTTQENEILVCDADKGLLKVTEEG---  146 (239)
Q Consensus        80 e~ia~d~~--G~ly~~~~~g~I~~~~~~G---~~~~~~~~---~~~--p~~Gl~~d~~G~L~v~d~~~g~~~v~~~g---  146 (239)
                      .+..|.|.  +.+.+++.||.+..|+.+.   +.+++...   +.|  +. -+++++||.++.+.-..|-+.+...|   
T Consensus       272 t~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~t-sC~~nrdg~~iAagc~DGSIQ~W~~~~~~  350 (641)
T KOG0772|consen  272 TCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVT-SCAWNRDGKLIAAGCLDGSIQIWDKGSRT  350 (641)
T ss_pred             eccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCce-eeecCCCcchhhhcccCCceeeeecCCcc
Confidence            34456652  3445666778777777543   23444322   222  44 78899999998877778888887423   


Q ss_pred             ceE--EecccCCccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCC-CeEEEecCCCCCc---
Q 026389          147 VTV--LASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSL-NETSILLDSLFFA---  220 (239)
Q Consensus       147 ~~~--l~~~~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~-~~~~~~~~~l~~p---  220 (239)
                      +..  .+.... .+-....-|++..||++..+-+.                 .+.+-.||... ++.-....+|..+   
T Consensus       351 v~p~~~vk~AH-~~g~~Itsi~FS~dg~~LlSRg~-----------------D~tLKvWDLrq~kkpL~~~tgL~t~~~~  412 (641)
T KOG0772|consen  351 VRPVMKVKDAH-LPGQDITSISFSYDGNYLLSRGF-----------------DDTLKVWDLRQFKKPLNVRTGLPTPFPG  412 (641)
T ss_pred             cccceEeeecc-CCCCceeEEEeccccchhhhccC-----------------CCceeeeeccccccchhhhcCCCccCCC
Confidence            222  121111 11124577899999998877543                 35566666542 2332333455433   


Q ss_pred             ceEEEcCCCCEEEE
Q 026389          221 NGVALSKDEDYLVV  234 (239)
Q Consensus       221 nGia~s~dg~~lyv  234 (239)
                      ..++||||.+.|+.
T Consensus       413 tdc~FSPd~kli~T  426 (641)
T KOG0772|consen  413 TDCCFSPDDKLILT  426 (641)
T ss_pred             CccccCCCceEEEe
Confidence            56889999885543

>PTZ00420 coronin; Provisional

Probab=95.89  E-value=0.76  Score=43.61  Aligned_cols=65  Identities=3%  Similarity=-0.070  Sum_probs=44.2

Q ss_pred             CcceEEEcCCCC-EE-EEeCCCeEEEEecC-CcEEEeeeccCcCccCeEEcCCCCEEEEeCCCCeEEEc
Q 026389           78 GPEDVCVDRNGV-LY-TATRDGWIKRLHKN-GTWENWKLIGGDTLLGITTTQENEILVCDADKGLLKVT  143 (239)
Q Consensus        78 gPe~ia~d~~G~-ly-~~~~~g~I~~~~~~-G~~~~~~~~~~~p~~Gl~~d~~G~L~v~d~~~g~~~v~  143 (239)
                      .-.+++|+|++. ++ +++.|+.|..||.. ++...-........ .++++++|+++++....+.+++.
T Consensus       127 ~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~~~~~V~-SlswspdG~lLat~s~D~~IrIw  194 (568)
T PTZ00420        127 KISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQINMPKKLS-SLKWNIKGNLLSGTCVGKHMHII  194 (568)
T ss_pred             cEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEecCCcEE-EEEECCCCCEEEEEecCCEEEEE
Confidence            346789999775 43 55689999999964 43221112234456 89999999998877666777765

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=95.88  E-value=0.12  Score=46.24  Aligned_cols=142  Identities=15%  Similarity=0.208  Sum_probs=71.7

Q ss_pred             EEcCCC-CEE-EEeC--CCeEEEEec-CCcEEEeeecc-CcCccCeEEcCCC-CEEEEeCCCCeEEEc-cCC-ceEEecc
Q 026389           83 CVDRNG-VLY-TATR--DGWIKRLHK-NGTWENWKLIG-GDTLLGITTTQEN-EILVCDADKGLLKVT-EEG-VTVLASH  153 (239)
Q Consensus        83 a~d~~G-~ly-~~~~--~g~I~~~~~-~G~~~~~~~~~-~~p~~Gl~~d~~G-~L~v~d~~~g~~~v~-~~g-~~~l~~~  153 (239)
                      +|.++| .|+ .++.  ...++.+|. +++.+.+.+.. .... |..+.++. .+|.......+++++ ..+ .+++...
T Consensus        42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~-g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~  120 (386)
T PF14583_consen   42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTF-GGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEV  120 (386)
T ss_dssp             -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TT-T-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE-
T ss_pred             CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCcc-ceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEEC
Confidence            566677 344 4443  457888886 45665555433 2344 66666555 454454557888998 555 5555443


Q ss_pred             cCCccccccccEEEcCCCCEEEEeCCCC--cC-c--ccccccceeecCCceEEEEeCCCCeEEEecCCCCCcceEEEcC
Q 026389          154 VNGSRINLADDLIAATDGSIYFSVASTK--FG-L--HNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSK  227 (239)
Q Consensus       154 ~~g~~~~~pn~l~vd~dG~iy~td~~~~--~~-~--~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~~l~~pnGia~s~  227 (239)
                      .++  +..--..+++.|++.++.....+  +. .  .....++++.++..+|+++|.++|+.+++...-..-+-+.+||
T Consensus       121 p~~--~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~~wlgH~~fsP  197 (386)
T PF14583_consen  121 PDD--WKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDTDWLGHVQFSP  197 (386)
T ss_dssp             -TT--EEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEESS-EEEEEEET
T ss_pred             Ccc--cccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEecCccccCcccCC
Confidence            222  11111233467888776543211  10 0  1134567788899999999999999999886655556666766

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=95.88  E-value=0.081  Score=50.38  Aligned_cols=105  Identities=19%  Similarity=0.231  Sum_probs=72.2

Q ss_pred             eEeccCCcCCcceEEEcCCCCEE-EEeCCCeEEEEec-CCc-EEEeeeccCcCccCeEEcCCCCEEEEeCCCCeEEEc--
Q 026389           69 TRLGEGILNGPEDVCVDRNGVLY-TATRDGWIKRLHK-NGT-WENWKLIGGDTLLGITTTQENEILVCDADKGLLKVT--  143 (239)
Q Consensus        69 ~~l~~g~~~gPe~ia~d~~G~ly-~~~~~g~I~~~~~-~G~-~~~~~~~~~~p~~Gl~~d~~G~L~v~d~~~g~~~v~--  143 (239)
                      .++..|-+..-.++.|.|+.+.. +++.|.++..||. .|. ++.|.. ...|.+.+++.++|+-+++....|++.+.  
T Consensus       528 lRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~G-H~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl  606 (707)
T KOG0263|consen  528 LRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTG-HKGPVTALAFSPCGRYLASGDEDGLIKIWDL  606 (707)
T ss_pred             hhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecC-CCCceEEEEEcCCCceEeecccCCcEEEEEc
Confidence            34455555555678888876544 7778899988985 454 455533 33444489999999988877777888876  


Q ss_pred             cCC--ceEEecccCCccccccccEEEcCCCCEEEEeCC
Q 026389          144 EEG--VTVLASHVNGSRINLADDLIAATDGSIYFSVAS  179 (239)
Q Consensus       144 ~~g--~~~l~~~~~g~~~~~pn~l~vd~dG~iy~td~~  179 (239)
                      .+|  +..+... .    .-.+.+.+..||.+.++++.
T Consensus       607 ~~~~~v~~l~~H-t----~ti~SlsFS~dg~vLasgg~  639 (707)
T KOG0263|consen  607 ANGSLVKQLKGH-T----GTIYSLSFSRDGNVLASGGA  639 (707)
T ss_pred             CCCcchhhhhcc-c----CceeEEEEecCCCEEEecCC
Confidence            455  3333333 2    24678999999999998766

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=95.87  E-value=0.13  Score=48.98  Aligned_cols=92  Identities=13%  Similarity=0.144  Sum_probs=62.0

Q ss_pred             CeEEcCCCCEEEEeCCCCeEEEc--cCC--ceEEecccCCccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecC
Q 026389          121 GITTTQENEILVCDADKGLLKVT--EEG--VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKP  196 (239)
Q Consensus       121 Gl~~d~~G~L~v~d~~~g~~~v~--~~g--~~~l~~~~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~  196 (239)
                      .+.|+|+.+...+.+....+++.  ..|  ++++..+.     .....+++.|+|+...+...                 
T Consensus       540 cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~-----~~V~al~~Sp~Gr~LaSg~e-----------------  597 (707)
T KOG0263|consen  540 CVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHK-----GPVTALAFSPCGRYLASGDE-----------------  597 (707)
T ss_pred             eEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCC-----CceEEEEEcCCCceEeeccc-----------------
Confidence            47788877666666666777775  466  66653321     23568999999987666544                 


Q ss_pred             CceEEEEeCCCCeEEEec-CCCCCcceEEEcCCCCEEEE
Q 026389          197 HGKLLKYDPSLNETSILL-DSLFFANGVALSKDEDYLVV  234 (239)
Q Consensus       197 ~g~v~~~d~~~~~~~~~~-~~l~~pnGia~s~dg~~lyv  234 (239)
                      .|.|..||..+++..... +.-..-+.|.||.||..|.+
T Consensus       598 d~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLas  636 (707)
T KOG0263|consen  598 DGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLAS  636 (707)
T ss_pred             CCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEe
Confidence            588999999876654333 33334577999999986544

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=95.86  E-value=0.17  Score=45.04  Aligned_cols=38  Identities=24%  Similarity=0.296  Sum_probs=28.4

Q ss_pred             eEeccCCcCCcceEEEcCCCCEEEEeCCCeEEEEec-CC
Q 026389           69 TRLGEGILNGPEDVCVDRNGVLYTATRDGWIKRLHK-NG  106 (239)
Q Consensus        69 ~~l~~g~~~gPe~ia~d~~G~ly~~~~~g~I~~~~~-~G  106 (239)
                      .+...|-...-.+|.|.-+|.||.++.|++|..|+. +|
T Consensus       240 ~~~lsgHT~~VTCvrwGG~gliySgS~DrtIkvw~a~dG  278 (480)
T KOG0271|consen  240 VRTLSGHTASVTCVRWGGEGLIYSGSQDRTIKVWRALDG  278 (480)
T ss_pred             EEEeccCccceEEEEEcCCceEEecCCCceEEEEEccch
Confidence            344445445566788888999999999999988875 44

>smart00135 LY Low-density lipoprotein-receptor YWTD domain

Probab=95.83  E-value=0.021  Score=33.76  Aligned_cols=33  Identities=6%  Similarity=-0.040  Sum_probs=26.8

Q ss_pred             cccccccEEEcCCC-CEEEEeCCCCcCcccccccceeecCCceEEEEeCCC
Q 026389          158 RINLADDLIAATDG-SIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSL  207 (239)
Q Consensus       158 ~~~~pn~l~vd~dG-~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~  207 (239)
                      .+..|+++++|+.+ ++||+|..                 .+.+++++.++
T Consensus         7 ~~~~~~~la~d~~~~~lYw~D~~-----------------~~~I~~~~~~g   40 (43)
T smart00135        7 GLGHPNGLAVDWIEGRLYWTDWG-----------------LDVIEVANLDG   40 (43)
T ss_pred             CCCCcCEEEEeecCCEEEEEeCC-----------------CCEEEEEeCCC
Confidence            45679999999985 89999987                 36788888764

Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=95.71  E-value=0.92  Score=40.10  Aligned_cols=133  Identities=13%  Similarity=0.071  Sum_probs=76.1

Q ss_pred             EEEcCCCCEE-EEeCCCeEEEEec-CCcEEEeeeccCcCccCeEEcCCCCEEEEeCCCCeEEEc--cCC-ceE-EecccC
Q 026389           82 VCVDRNGVLY-TATRDGWIKRLHK-NGTWENWKLIGGDTLLGITTTQENEILVCDADKGLLKVT--EEG-VTV-LASHVN  155 (239)
Q Consensus        82 ia~d~~G~ly-~~~~~g~I~~~~~-~G~~~~~~~~~~~p~~Gl~~d~~G~L~v~d~~~g~~~v~--~~g-~~~-l~~~~~  155 (239)
                      ++.+|+-++. ++..|.+-+.|+. +|++..-........+.+.|..+|.++++-.-.|.+++.  ..| .+. +.... 
T Consensus        70 vsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~-  148 (399)
T KOG0296|consen   70 VSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEV-  148 (399)
T ss_pred             EEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEeeccc-
Confidence            4555655555 4446666666664 454211111111222267788899888887667888876  345 332 32122 


Q ss_pred             CccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecCCCCCc-ceEEEcCCCCEEEE
Q 026389          156 GSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFA-NGVALSKDEDYLVV  234 (239)
Q Consensus       156 g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~~l~~p-nGia~s~dg~~lyv  234 (239)
                          .-..-+...|.+.|.++.+.                 .|.+|.|....+....+..+-..| +-=.|.|||+.++.
T Consensus       149 ----~dieWl~WHp~a~illAG~~-----------------DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~t  207 (399)
T KOG0296|consen  149 ----EDIEWLKWHPRAHILLAGST-----------------DGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILT  207 (399)
T ss_pred             ----CceEEEEecccccEEEeecC-----------------CCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEE
Confidence                22445677788877776554                 588999887764454555443333 33357788887765


Q ss_pred             Ee
Q 026389          235 CE  236 (239)
Q Consensus       235 ad  236 (239)
                      ..
T Consensus       208 gy  209 (399)
T KOG0296|consen  208 GY  209 (399)
T ss_pred             Ee
Confidence            43

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=95.71  E-value=0.34  Score=44.08  Aligned_cols=73  Identities=14%  Similarity=0.197  Sum_probs=48.6

Q ss_pred             CCcceEEEcCCCCEE-EEeCCCeEEEEecCCcE-EEeeeccCcCccCeEEcCCCCEEEEeCC-CCeEEEc-cCC-ceEE
Q 026389           77 NGPEDVCVDRNGVLY-TATRDGWIKRLHKNGTW-ENWKLIGGDTLLGITTTQENEILVCDAD-KGLLKVT-EEG-VTVL  150 (239)
Q Consensus        77 ~gPe~ia~d~~G~ly-~~~~~g~I~~~~~~G~~-~~~~~~~~~p~~Gl~~d~~G~L~v~d~~-~g~~~v~-~~g-~~~l  150 (239)
                      ..-.+++|..+|.+. +++.+|.+..|+.+|.. .++....+... .|.+.++|+-+++... +.++..| ..| ..+.
T Consensus       236 kdVT~L~Wn~~G~~LatG~~~G~~riw~~~G~l~~tl~~HkgPI~-slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~  313 (524)
T KOG0273|consen  236 KDVTSLDWNNDGTLLATGSEDGEARIWNKDGNLISTLGQHKGPIF-SLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQ  313 (524)
T ss_pred             CCcceEEecCCCCeEEEeecCcEEEEEecCchhhhhhhccCCceE-EEEEcCCCCEEEeccCCccEEEEeccCceEEEe
Confidence            455678999999877 67799999999998864 34444434444 8889888865555433 3444445 456 4443

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=95.68  E-value=0.28  Score=43.95  Aligned_cols=135  Identities=13%  Similarity=0.091  Sum_probs=81.7

Q ss_pred             CcceEEEcCCCCEEEEe-C--CCeEEEEecCCcEEEeeec-cCcCccCeEEcCCCCEEEEeCCCCeEEEcc-CCceEEec
Q 026389           78 GPEDVCVDRNGVLYTAT-R--DGWIKRLHKNGTWENWKLI-GGDTLLGITTTQENEILVCDADKGLLKVTE-EGVTVLAS  152 (239)
Q Consensus        78 gPe~ia~d~~G~ly~~~-~--~g~I~~~~~~G~~~~~~~~-~~~p~~Gl~~d~~G~L~v~d~~~g~~~v~~-~g~~~l~~  152 (239)
                      +--+|+|.+||.|..+. .  -+|||=+. .|+-..+... ....+ ++.|+++|..+.+-+..+..+|.+ -+.+.+..
T Consensus       305 ~v~~iaf~~DGSL~~tGGlD~~~RvWDlR-tgr~im~L~gH~k~I~-~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~  382 (459)
T KOG0272|consen  305 GVFSIAFQPDGSLAATGGLDSLGRVWDLR-TGRCIMFLAGHIKEIL-SVAFSPNGYHLATGSSDNTCKVWDLRMRSELYT  382 (459)
T ss_pred             ccceeEecCCCceeeccCccchhheeecc-cCcEEEEeccccccee-eEeECCCceEEeecCCCCcEEEeeeccccccee
Confidence            45579999999998554 3  35665553 5654444333 34455 999999999988888888888862 33111111


Q ss_pred             ccCCccccccccEEEcCC-CCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeE-EEecCCCCCcceEEEcCCCC
Q 026389          153 HVNGSRINLADDLIAATD-GSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNET-SILLDSLFFANGVALSKDED  230 (239)
Q Consensus       153 ~~~g~~~~~pn~l~vd~d-G~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~-~~~~~~l~~pnGia~s~dg~  230 (239)
                       ..+. -+-..++.+.|+ |...+|.+.                 .+.+-.|...+.+. ..++..-...-++.+++|++
T Consensus       383 -ipAH-~nlVS~Vk~~p~~g~fL~Tasy-----------------D~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~  443 (459)
T KOG0272|consen  383 -IPAH-SNLVSQVKYSPQEGYFLVTASY-----------------DNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQ  443 (459)
T ss_pred             -cccc-cchhhheEecccCCeEEEEccc-----------------CcceeeecCCCcccchhhcCCccceEEEEeccCCc
Confidence             1110 134678899984 677777654                 34455565555443 23333334556677788887


Q ss_pred             EEE
Q 026389          231 YLV  233 (239)
Q Consensus       231 ~ly  233 (239)
                      ++.
T Consensus       444 ~i~  446 (459)
T KOG0272|consen  444 AIA  446 (459)
T ss_pred             eEE
Confidence            553

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=95.66  E-value=1.3  Score=38.63  Aligned_cols=140  Identities=15%  Similarity=0.109  Sum_probs=73.4

Q ss_pred             CcceEEEcCCCCEEE-EeCCCeEEEEecCC---cEEEe---eeccCcCccCeEEcCCCC-EEEEeCCCCeEEE---c--c
Q 026389           78 GPEDVCVDRNGVLYT-ATRDGWIKRLHKNG---TWENW---KLIGGDTLLGITTTQENE-ILVCDADKGLLKV---T--E  144 (239)
Q Consensus        78 gPe~ia~d~~G~ly~-~~~~g~I~~~~~~G---~~~~~---~~~~~~p~~Gl~~d~~G~-L~v~d~~~g~~~v---~--~  144 (239)
                      .-.+++|.+||.-+. .+.|+.|..|+.+.   +-..+   .-+.++|. -++|.+|-+ ++|+-.....+++   +  .
T Consensus        88 ~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT-~V~FapDc~s~vv~~~~g~~l~vyk~~K~~  166 (420)
T KOG2096|consen   88 EVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPT-RVVFAPDCKSVVVSVKRGNKLCVYKLVKKT  166 (420)
T ss_pred             ceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCce-EEEECCCcceEEEEEccCCEEEEEEeeecc
Confidence            356899999997664 45778777777421   11111   11235788 899987765 4444333333333   2  2


Q ss_pred             CC-ceEEecccCCc---ccccc--ccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecCCCC
Q 026389          145 EG-VTVLASHVNGS---RINLA--DDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLF  218 (239)
Q Consensus       145 ~g-~~~l~~~~~g~---~~~~p--n~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~~l~  218 (239)
                      +| ...-....+..   .-...  -++-++ ++..|+...+.                .-.|..|+.++..+..+-++-.
T Consensus       167 dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA-~~~k~imsas~----------------dt~i~lw~lkGq~L~~idtnq~  229 (420)
T KOG2096|consen  167 DGSGSHHFVHIDNLEFERKHQVDIINIGIA-GNAKYIMSASL----------------DTKICLWDLKGQLLQSIDTNQS  229 (420)
T ss_pred             cCCCCcccccccccccchhcccceEEEeec-CCceEEEEecC----------------CCcEEEEecCCceeeeeccccc
Confidence            45 22211111110   00111  123333 33444444331                3468888888554555555544


Q ss_pred             CcceEEEcCCCCEEEEE
Q 026389          219 FANGVALSKDEDYLVVC  235 (239)
Q Consensus       219 ~pnGia~s~dg~~lyva  235 (239)
                      .-...++||||+++-++
T Consensus       230 ~n~~aavSP~GRFia~~  246 (420)
T KOG2096|consen  230 SNYDAAVSPDGRFIAVS  246 (420)
T ss_pred             cccceeeCCCCcEEEEe
Confidence            55567899999987654

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=95.61  E-value=0.54  Score=40.85  Aligned_cols=92  Identities=17%  Similarity=0.206  Sum_probs=53.6

Q ss_pred             eEEEcCCCCEE--EEeCCCeEEEEecCC--cEEEeeeccCcCccCeEEcCCC---CEEEEeCCCCeEEEccCC-ceEEec
Q 026389           81 DVCVDRNGVLY--TATRDGWIKRLHKNG--TWENWKLIGGDTLLGITTTQEN---EILVCDADKGLLKVTEEG-VTVLAS  152 (239)
Q Consensus        81 ~ia~d~~G~ly--~~~~~g~I~~~~~~G--~~~~~~~~~~~p~~Gl~~d~~G---~L~v~d~~~g~~~v~~~g-~~~l~~  152 (239)
                      .+|++  | .|  .|+.|.+|+.||-.-  +...+....+..+ .+.|+..-   .|+.+. ..|.+.+...| -+.+ +
T Consensus        48 avAVs--~-~~~aSGssDetI~IYDm~k~~qlg~ll~Hagsit-aL~F~~~~S~shLlS~s-dDG~i~iw~~~~W~~~-~  121 (362)
T KOG0294|consen   48 ALAVS--G-PYVASGSSDETIHIYDMRKRKQLGILLSHAGSIT-ALKFYPPLSKSHLLSGS-DDGHIIIWRVGSWELL-K  121 (362)
T ss_pred             EEEec--c-eeEeccCCCCcEEEEeccchhhhcceeccccceE-EEEecCCcchhheeeec-CCCcEEEEEcCCeEEe-e
Confidence            45654  3 44  345889999998432  2222333456666 77776443   455443 35666666544 3322 2


Q ss_pred             ccCCccccccccEEEcCCCCEEEEeCC
Q 026389          153 HVNGSRINLADDLIAATDGSIYFSVAS  179 (239)
Q Consensus       153 ~~~g~~~~~pn~l~vd~dG~iy~td~~  179 (239)
                      ...+... ..|++++.|.|.|-++-..
T Consensus       122 slK~H~~-~Vt~lsiHPS~KLALsVg~  147 (362)
T KOG0294|consen  122 SLKAHKG-QVTDLSIHPSGKLALSVGG  147 (362)
T ss_pred             eeccccc-ccceeEecCCCceEEEEcC
Confidence            2222222 2899999999999888754

>COG1520 FOG: WD40-like repeat [Function unknown]

Probab=95.57  E-value=0.23  Score=44.28  Aligned_cols=94  Identities=16%  Similarity=0.248  Sum_probs=54.6

Q ss_pred             EEcCCCCEEEEeCCCeEEEEec-CCcEEEeeeccC--cCccCeEEcCCCCEEEEeCCCCeEEEcc-CC-ceEEecccCCc
Q 026389           83 CVDRNGVLYTATRDGWIKRLHK-NGTWENWKLIGG--DTLLGITTTQENEILVCDADKGLLKVTE-EG-VTVLASHVNGS  157 (239)
Q Consensus        83 a~d~~G~ly~~~~~g~I~~~~~-~G~~~~~~~~~~--~p~~Gl~~d~~G~L~v~d~~~g~~~v~~-~g-~~~l~~~~~g~  157 (239)
                      ....+|+||+++.+++++.+|. +|+..-.....+  .-. +-.+-.++.+|+......++.++. +| ...-.....+.
T Consensus       107 ~~~~~G~i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~~-~~~v~~~~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~  185 (370)
T COG1520         107 ILGSDGKIYVGSWDGKLYALDASTGTLVWSRNVGGSPYYA-SPPVVGDGTVYVGTDDGHLYALNADTGTLKWTYETPAPL  185 (370)
T ss_pred             eEEeCCeEEEecccceEEEEECCCCcEEEEEecCCCeEEe-cCcEEcCcEEEEecCCCeEEEEEccCCcEEEEEecCCcc
Confidence            3334899999999999999998 786532222222  122 333346788888864467788884 57 33322211101


Q ss_pred             cccccccEEEcCCCCEEEEeC
Q 026389          158 RINLADDLIAATDGSIYFSVA  178 (239)
Q Consensus       158 ~~~~pn~l~vd~dG~iy~td~  178 (239)
                      ......... ..+|.+|++..
T Consensus       186 ~~~~~~~~~-~~~~~vy~~~~  205 (370)
T COG1520         186 SLSIYGSPA-IASGTVYVGSD  205 (370)
T ss_pred             ccccccCce-eecceEEEecC
Confidence            222222233 66788998865

>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]

Probab=95.52  E-value=0.12  Score=48.15  Aligned_cols=96  Identities=21%  Similarity=0.335  Sum_probs=64.1

Q ss_pred             EEcCCCCEEEEeCCCeEEEEecCCcEEEeeeccCcCc---cCeEEcCCCCEEEEeCCCCeEEEcc-CC-c-eEEecccCC
Q 026389           83 CVDRNGVLYTATRDGWIKRLHKNGTWENWKLIGGDTL---LGITTTQENEILVCDADKGLLKVTE-EG-V-TVLASHVNG  156 (239)
Q Consensus        83 a~d~~G~ly~~~~~g~I~~~~~~G~~~~~~~~~~~p~---~Gl~~d~~G~L~v~d~~~g~~~v~~-~g-~-~~l~~~~~g  156 (239)
                      .+|++|.+|+++.++-+.|++....+.++.+..+-|.   ..|.-|++++||+... .|+++.++ .+ + ..+.....+
T Consensus       382 ~~d~~g~lWlgs~q~GLsrl~n~n~~avlde~agl~ss~V~aived~dnsLWIGTs-~Glvk~~pe~~~v~n~ln~~~~~  460 (671)
T COG3292         382 LEDSRGRLWLGSMQNGLSRLDNKNEWAVLDEDAGLPSSEVSAIVEDPDNSLWIGTS-GGLVKRDPESGRVLNLLNPGSHG  460 (671)
T ss_pred             hhccCCcEEEEecccchhhhccCCcccccccccCCcccceeeeeecCCCCEEEecc-CCeEecCccccchhcccccccCc
Confidence            4456889999998888888876443444433333333   1566789999998775 68999984 44 3 333322233


Q ss_pred             ccccccccEEEcCCCCEEEEeCC
Q 026389          157 SRINLADDLIAATDGSIYFSVAS  179 (239)
Q Consensus       157 ~~~~~pn~l~vd~dG~iy~td~~  179 (239)
                      .+-.+..-+.++++|++|++..+
T Consensus       461 l~~s~~~~lg~~~~g~Lw~a~g~  483 (671)
T COG3292         461 LDGSRVEQLGLGPDGRLWLAAGS  483 (671)
T ss_pred             CCcchhhhhccCCCCceEEEecc
Confidence            33445678899999999998765

>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins

Probab=95.45  E-value=0.56  Score=43.55  Aligned_cols=114  Identities=17%  Similarity=0.155  Sum_probs=59.0

Q ss_pred             EEEcCCCCEEEEeCCCeEEEEecCCcEEEeeeccCc----CccCeEEcCCCCEEEEeC--------------CCCeEEEc
Q 026389           82 VCVDRNGVLYTATRDGWIKRLHKNGTWENWKLIGGD----TLLGITTTQENEILVCDA--------------DKGLLKVT  143 (239)
Q Consensus        82 ia~d~~G~ly~~~~~g~I~~~~~~G~~~~~~~~~~~----p~~Gl~~d~~G~L~v~d~--------------~~g~~~v~  143 (239)
                      +...++|+++++.. +++.++|..|++.......+.    =+ .+...++|++++...              ...++.++
T Consensus       153 ~~~l~nG~ll~~~~-~~~~e~D~~G~v~~~~~l~~~~~~~HH-D~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivevd  230 (477)
T PF05935_consen  153 FKQLPNGNLLIGSG-NRLYEIDLLGKVIWEYDLPGGYYDFHH-DIDELPNGNLLILASETKYVDEDKDVDTVEDVIVEVD  230 (477)
T ss_dssp             EEE-TTS-EEEEEB-TEEEEE-TT--EEEEEE--TTEE-B-S--EEE-TTS-EEEEEEETTEE-TS-EE---S-EEEEE-
T ss_pred             eeEcCCCCEEEecC-CceEEEcCCCCEEEeeecCCccccccc-ccEECCCCCEEEEEeecccccCCCCccEecCEEEEEC
Confidence            45557788887665 788888888875332222221    35 777889998666443              23577888


Q ss_pred             cCC--ceEE--ecccC--------------------CccccccccEEEcC-CCCEEEEeCCCCcCcccccccceeecCCc
Q 026389          144 EEG--VTVL--ASHVN--------------------GSRINLADDLIAAT-DGSIYFSVASTKFGLHNWGLDLLEAKPHG  198 (239)
Q Consensus       144 ~~g--~~~l--~~~~~--------------------g~~~~~pn~l~vd~-dG~iy~td~~~~~~~~~~~~~~~e~~~~g  198 (239)
                      ++|  +..+  .+.++                    +..-.+.|++..++ ++.|++|.-.                 ..
T Consensus       231 ~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~dd~iivSsR~-----------------~s  293 (477)
T PF05935_consen  231 PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPSDDSIIVSSRH-----------------QS  293 (477)
T ss_dssp             TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETTTTEEEEEETT-----------------T-
T ss_pred             CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeCCCCeEEEEcCc-----------------ce
Confidence            777  3322  11111                    11224789999999 6788888644                 24


Q ss_pred             eEEEEeCCCCeEEEec
Q 026389          199 KLLKYDPSLNETSILL  214 (239)
Q Consensus       199 ~v~~~d~~~~~~~~~~  214 (239)
                      .|+++|..++++.=++
T Consensus       294 ~V~~Id~~t~~i~Wil  309 (477)
T PF05935_consen  294 AVIKIDYRTGKIKWIL  309 (477)
T ss_dssp             EEEEEE-TTS-EEEEE
T ss_pred             EEEEEECCCCcEEEEe
Confidence            6777776666665433

Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=95.40  E-value=0.3  Score=46.34  Aligned_cols=96  Identities=13%  Similarity=0.129  Sum_probs=61.4

Q ss_pred             CcceEEEcCCCCEEEEeCCCeEEEEecCCcE-EEeeeccCcCccCeEEcCCCCEEEEeCCCCeEEEccCC--ceEEeccc
Q 026389           78 GPEDVCVDRNGVLYTATRDGWIKRLHKNGTW-ENWKLIGGDTLLGITTTQENEILVCDADKGLLKVTEEG--VTVLASHV  154 (239)
Q Consensus        78 gPe~ia~d~~G~ly~~~~~g~I~~~~~~G~~-~~~~~~~~~p~~Gl~~d~~G~L~v~d~~~g~~~v~~~g--~~~l~~~~  154 (239)
                      --+|+++-+++.+..++.||.|.+|+.+|+. .........-+ .+....++.++|+-...+.+++...+  .+.+..  
T Consensus       181 ~VRgL~vl~~~~flScsNDg~Ir~w~~~ge~l~~~~ghtn~vY-sis~~~~~~~Ivs~gEDrtlriW~~~e~~q~I~l--  257 (745)
T KOG0301|consen  181 CVRGLAVLDDSHFLSCSNDGSIRLWDLDGEVLLEMHGHTNFVY-SISMALSDGLIVSTGEDRTLRIWKKDECVQVITL--  257 (745)
T ss_pred             heeeeEEecCCCeEeecCCceEEEEeccCceeeeeeccceEEE-EEEecCCCCeEEEecCCceEEEeecCceEEEEec--
Confidence            3567888888888888999999999988874 22222223344 55544567788887778888888555  333321  


Q ss_pred             CCccccccccEEEcCCCCEEEEeCC
Q 026389          155 NGSRINLADDLIAATDGSIYFSVAS  179 (239)
Q Consensus       155 ~g~~~~~pn~l~vd~dG~iy~td~~  179 (239)
                         |-....++.+-++|.|+++.+.
T Consensus       258 ---PttsiWsa~~L~NgDIvvg~SD  279 (745)
T KOG0301|consen  258 ---PTTSIWSAKVLLNGDIVVGGSD  279 (745)
T ss_pred             ---CccceEEEEEeeCCCEEEeccC
Confidence               1123455666666666665543

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=95.38  E-value=0.37  Score=42.56  Aligned_cols=135  Identities=15%  Similarity=0.148  Sum_probs=79.0

Q ss_pred             eEEEcC-CCCEEEEeCCCeEEEEec-CCcEE-EeeeccCcCccCeEEcCCCCEEEEeCCCCeEEEc-cCC--ceEEeccc
Q 026389           81 DVCVDR-NGVLYTATRDGWIKRLHK-NGTWE-NWKLIGGDTLLGITTTQENEILVCDADKGLLKVT-EEG--VTVLASHV  154 (239)
Q Consensus        81 ~ia~d~-~G~ly~~~~~g~I~~~~~-~G~~~-~~~~~~~~p~~Gl~~d~~G~L~v~d~~~g~~~v~-~~g--~~~l~~~~  154 (239)
                      .+.+.+ |+.+|+++.|+.|..||. .|+.. +......... .++..+.-.++++.+...+-..+ +.|  ..-+    
T Consensus       282 ~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvr-al~lhP~e~~fASas~dnik~w~~p~g~f~~nl----  356 (460)
T KOG0285|consen  282 SVMCQPTDPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVR-ALCLHPKENLFASASPDNIKQWKLPEGEFLQNL----  356 (460)
T ss_pred             eEEeecCCCceEEecCCceEEEeeeccCceeEeeecccceee-EEecCCchhhhhccCCccceeccCCccchhhcc----
Confidence            345555 789999999999999985 56532 2222222333 67777777788776655555555 566  2211    


Q ss_pred             CCccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEec-----C-CCC---CcceEEE
Q 026389          155 NGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILL-----D-SLF---FANGVAL  225 (239)
Q Consensus       155 ~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~-----~-~l~---~pnGia~  225 (239)
                      .|.. .-.|.+++..||. ||+.+.                 +|.++.+|-.+|.--...     . .+.   .....||
T Consensus       357 sgh~-~iintl~~nsD~v-~~~G~d-----------------ng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~f  417 (460)
T KOG0285|consen  357 SGHN-AIINTLSVNSDGV-LVSGGD-----------------NGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCF  417 (460)
T ss_pred             cccc-ceeeeeeeccCce-EEEcCC-----------------ceEEEEEecCcCcccccccccccCCccccccceeEEee
Confidence            1211 1256777777764 444333                 577888887665321111     1 111   2245678


Q ss_pred             cCCCCEEEEEeCCC
Q 026389          226 SKDEDYLVVCETFK  239 (239)
Q Consensus       226 s~dg~~lyvadt~~  239 (239)
                      +.-|..|..+|+.+
T Consensus       418 Dktg~rlit~eadK  431 (460)
T KOG0285|consen  418 DKTGSRLITGEADK  431 (460)
T ss_pred             cccCceEEeccCCc
Confidence            88888888887653

>PRK13684 Ycf48-like protein; Provisional

Probab=95.38  E-value=1.1  Score=39.47  Aligned_cols=83  Identities=14%  Similarity=0.229  Sum_probs=38.7

Q ss_pred             EEEEeCCCeEEEEecCC-cEEEeee---ccCcCccCeEEcCCCCEEEEeCCCCeEEEccCCc--eEEecccCCccccccc
Q 026389           90 LYTATRDGWIKRLHKNG-TWENWKL---IGGDTLLGITTTQENEILVCDADKGLLKVTEEGV--TVLASHVNGSRINLAD  163 (239)
Q Consensus        90 ly~~~~~g~I~~~~~~G-~~~~~~~---~~~~p~~Gl~~d~~G~L~v~d~~~g~~~v~~~g~--~~l~~~~~g~~~~~pn  163 (239)
                      .|+....|.|++-...| +|+.+..   ..+.++ ++....++.+|++....++++-.+.|.  +.+.....    ...+
T Consensus       102 ~~~~G~~g~i~~S~DgG~tW~~~~~~~~~~~~~~-~i~~~~~~~~~~~g~~G~i~~S~DgG~tW~~~~~~~~----g~~~  176 (334)
T PRK13684        102 GWIVGQPSLLLHTTDGGKNWTRIPLSEKLPGSPY-LITALGPGTAEMATNVGAIYRTTDGGKNWEALVEDAA----GVVR  176 (334)
T ss_pred             EEEeCCCceEEEECCCCCCCeEccCCcCCCCCce-EEEEECCCcceeeeccceEEEECCCCCCceeCcCCCc----ceEE
Confidence            44444455566543223 3443321   223455 554444455666654434444444442  22222222    2456


Q ss_pred             cEEEcCCCCEEEEe
Q 026389          164 DLIAATDGSIYFSV  177 (239)
Q Consensus       164 ~l~vd~dG~iy~td  177 (239)
                      ++.++++|.+++..
T Consensus       177 ~i~~~~~g~~v~~g  190 (334)
T PRK13684        177 NLRRSPDGKYVAVS  190 (334)
T ss_pred             EEEECCCCeEEEEe
Confidence            77777777655544

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=95.32  E-value=0.5  Score=43.92  Aligned_cols=100  Identities=14%  Similarity=0.218  Sum_probs=54.0

Q ss_pred             EEEEeCCCeEEEEec-CCcEEEeeeccCcCccCeEEcCCCCEEEEe------------------CCCCeEEEc-cCCceE
Q 026389           90 LYTATRDGWIKRLHK-NGTWENWKLIGGDTLLGITTTQENEILVCD------------------ADKGLLKVT-EEGVTV  149 (239)
Q Consensus        90 ly~~~~~g~I~~~~~-~G~~~~~~~~~~~p~~Gl~~d~~G~L~v~d------------------~~~g~~~v~-~~g~~~  149 (239)
                      +|++..+|+++.+|. +|+. .|..... -. +++.++ +.+|+..                  ....++.+| .+|..+
T Consensus       304 V~~g~~~G~l~ald~~tG~~-~W~~~~~-~~-~~~~~~-~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~  379 (488)
T cd00216         304 IVHAPKNGFFYVLDRTTGKL-ISARPEV-EQ-PMAYDP-GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVV  379 (488)
T ss_pred             EEEECCCceEEEEECCCCcE-eeEeEee-cc-ccccCC-ceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEe
Confidence            778888999999996 5654 2322111 12 455554 6777742                  123456677 566222


Q ss_pred             EecccCCcc----cccc--ccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEE
Q 026389          150 LASHVNGSR----INLA--DDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETS  211 (239)
Q Consensus       150 l~~~~~g~~----~~~p--n~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~  211 (239)
                      ........+    +..+  ..-.+..++.||+++.                  .|+|+.+|.++|++.
T Consensus       380 W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~------------------dG~l~ald~~tG~~l  429 (488)
T cd00216         380 WEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAA------------------DGYFRAFDATTGKEL  429 (488)
T ss_pred             eEeeCCccccccccCCcccCcceEecCCeEEEECC------------------CCeEEEEECCCCcee
Confidence            221111000    0011  1112233467888774                  388999999888753

The alignment model contains an 8-bladed beta-propeller.

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=95.29  E-value=0.5  Score=46.34  Aligned_cols=128  Identities=16%  Similarity=0.259  Sum_probs=78.4

Q ss_pred             CEEEEe--CCCeEEEEec-CCcE-EEeeeccCcCccCeEEc------CCCCEEEEeCCCCeEEEcc--CCceEEecccCC
Q 026389           89 VLYTAT--RDGWIKRLHK-NGTW-ENWKLIGGDTLLGITTT------QENEILVCDADKGLLKVTE--EGVTVLASHVNG  156 (239)
Q Consensus        89 ~ly~~~--~~g~I~~~~~-~G~~-~~~~~~~~~p~~Gl~~d------~~G~L~v~d~~~g~~~v~~--~g~~~l~~~~~g  156 (239)
                      .++.-+  ....|+++|. .|++ +.|.-....|...++-+      .+...|++-..++++++|+  .|..++......
T Consensus       494 ~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~  573 (794)
T PF08553_consen  494 NMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQ  573 (794)
T ss_pred             ceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccc
Confidence            444433  4578888885 4653 44532221111022221      1236788888899999993  452222111100


Q ss_pred             -ccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecCCCCCc-ceEEEcCCCCEEEE
Q 026389          157 -SRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFA-NGVALSKDEDYLVV  234 (239)
Q Consensus       157 -~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~~l~~p-nGia~s~dg~~lyv  234 (239)
                       ..-+-..-++.+.+|.|.++...                  |.|-.||.-+.+....+.++..| .||.++.||++|+.
T Consensus       574 Y~~~~~Fs~~aTt~~G~iavgs~~------------------G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwila  635 (794)
T PF08553_consen  574 YSSKNNFSCFATTEDGYIAVGSNK------------------GDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILA  635 (794)
T ss_pred             cccCCCceEEEecCCceEEEEeCC------------------CcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEE
Confidence             11122356788889999888754                  78888887766667777787776 89999999998764

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=95.26  E-value=0.56  Score=44.37  Aligned_cols=140  Identities=17%  Similarity=0.163  Sum_probs=75.7

Q ss_pred             EEEcCCCCEE-EEe-CCCeEEEEecCCcEEE--eeec--cCcCccCeEEcCCC-CEEEEe-CCCCeEEEcc-CC-ceEEe
Q 026389           82 VCVDRNGVLY-TAT-RDGWIKRLHKNGTWEN--WKLI--GGDTLLGITTTQEN-EILVCD-ADKGLLKVTE-EG-VTVLA  151 (239)
Q Consensus        82 ia~d~~G~ly-~~~-~~g~I~~~~~~G~~~~--~~~~--~~~p~~Gl~~d~~G-~L~v~d-~~~g~~~v~~-~g-~~~l~  151 (239)
                      -+..|+|++. .+. .+=+|+|+++++.+..  ....  ...+.+-+.+..|+ .++++. ....+..+.. .. .+.+.
T Consensus       388 ~aiSPdg~~Ia~st~~~~~iy~L~~~~~vk~~~v~~~~~~~~~a~~i~ftid~~k~~~~s~~~~~le~~el~~ps~kel~  467 (691)
T KOG2048|consen  388 AAISPDGNLIAISTVSRTKIYRLQPDPNVKVINVDDVPLALLDASAISFTIDKNKLFLVSKNIFSLEEFELETPSFKELK  467 (691)
T ss_pred             eccCCCCCEEEEeeccceEEEEeccCcceeEEEeccchhhhccceeeEEEecCceEEEEecccceeEEEEecCcchhhhh
Confidence            4667889876 333 7789999998774322  1111  11111134455455 333333 2233334442 22 22222


Q ss_pred             cccCCccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecCCCC-CcceEEEc-CCC
Q 026389          152 SHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLF-FANGVALS-KDE  229 (239)
Q Consensus       152 ~~~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~~l~-~pnGia~s-~dg  229 (239)
                      .......-...+-+++.++|+.+..-+.                 .|.|+.|+..+++.+.+...+. .-..++++ .+-
T Consensus       468 ~~~~~~~~~~I~~l~~SsdG~yiaa~~t-----------------~g~I~v~nl~~~~~~~l~~rln~~vTa~~~~~~~~  530 (691)
T KOG2048|consen  468 SIQSQAKCPSISRLVVSSDGNYIAAIST-----------------RGQIFVYNLETLESHLLKVRLNIDVTAAAFSPFVR  530 (691)
T ss_pred             ccccccCCCcceeEEEcCCCCEEEEEec-----------------cceEEEEEcccceeecchhccCcceeeeecccccc
Confidence            2111122345678999999974433323                 4889999999888877763333 23455666 345


Q ss_pred             CEEEEEeCC
Q 026389          230 DYLVVCETF  238 (239)
Q Consensus       230 ~~lyvadt~  238 (239)
                      +.|.|+.+.
T Consensus       531 ~~lvvats~  539 (691)
T KOG2048|consen  531 NRLVVATSN  539 (691)
T ss_pred             CcEEEEecC
Confidence            567776653

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=95.18  E-value=0.48  Score=43.03  Aligned_cols=140  Identities=14%  Similarity=0.123  Sum_probs=80.8

Q ss_pred             CcceEEEcCCCC-EEEEeCCCeEEEEecCCcEEEe---eeccCcCccCeEEcCCCC-EEEEeCCCCeEE-Ec-cCC-ceE
Q 026389           78 GPEDVCVDRNGV-LYTATRDGWIKRLHKNGTWENW---KLIGGDTLLGITTTQENE-ILVCDADKGLLK-VT-EEG-VTV  149 (239)
Q Consensus        78 gPe~ia~d~~G~-ly~~~~~g~I~~~~~~G~~~~~---~~~~~~p~~Gl~~d~~G~-L~v~d~~~g~~~-v~-~~g-~~~  149 (239)
                      +-.+|-|.|.-. +.++.-++.+..|..||++...   ......|+.-.+|.++|. .+++...+..+. .| ..+ ++.
T Consensus       215 ~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k  294 (514)
T KOG2055|consen  215 GITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTK  294 (514)
T ss_pred             CceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeecccccccc
Confidence            345678887654 4477778776666667754221   223345653566778886 333333333333 34 444 443


Q ss_pred             EecccCCccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecCCCCCcceEEEcCCC
Q 026389          150 LASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDE  229 (239)
Q Consensus       150 l~~~~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~~l~~pnGia~s~dg  229 (239)
                      +. ...|.+-.+..-..|++++++......                 +|.|+.....|++...-..--....+++|+.|+
T Consensus       295 ~~-~~~g~e~~~~e~FeVShd~~fia~~G~-----------------~G~I~lLhakT~eli~s~KieG~v~~~~fsSds  356 (514)
T KOG2055|consen  295 LK-PPYGVEEKSMERFEVSHDSNFIAIAGN-----------------NGHIHLLHAKTKELITSFKIEGVVSDFTFSSDS  356 (514)
T ss_pred             cc-CCCCcccchhheeEecCCCCeEEEccc-----------------CceEEeehhhhhhhhheeeeccEEeeEEEecCC
Confidence            32 223333345567788999986655543                 578888877766542221112345678888888


Q ss_pred             CEEEEE
Q 026389          230 DYLVVC  235 (239)
Q Consensus       230 ~~lyva  235 (239)
                      +.||++
T Consensus       357 k~l~~~  362 (514)
T KOG2055|consen  357 KELLAS  362 (514)
T ss_pred             cEEEEE
Confidence            888776

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=95.13  E-value=1.5  Score=40.00  Aligned_cols=65  Identities=22%  Similarity=0.241  Sum_probs=43.9

Q ss_pred             Cc-ceEEEcCCCCEEEEeCCCeEEEEecC--CcEEEeeeccCcCccCeEEcCCCCEEEEeCCCCeEEEc
Q 026389           78 GP-EDVCVDRNGVLYTATRDGWIKRLHKN--GTWENWKLIGGDTLLGITTTQENEILVCDADKGLLKVT  143 (239)
Q Consensus        78 gP-e~ia~d~~G~ly~~~~~g~I~~~~~~--G~~~~~~~~~~~p~~Gl~~d~~G~L~v~d~~~g~~~v~  143 (239)
                      .| -+|.|-.+..+-+++.++.|+.+..+  .-+.++....+... +|.+++.|.|+.+-++.+.+++.
T Consensus       319 ~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~-alk~n~tg~LLaS~SdD~TlkiW  386 (524)
T KOG0273|consen  319 APALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVN-ALKWNPTGSLLASCSDDGTLKIW  386 (524)
T ss_pred             CCccceEEecCceEeecCCCceEEEEEecCCCcceeeecccCceE-EEEECCCCceEEEecCCCeeEee
Confidence            44 44666555566666688877665543  33455555566777 89999999988887777766664

>PLN00181 protein SPA1-RELATED; Provisional

Probab=95.11  E-value=2.4  Score=41.89  Aligned_cols=131  Identities=15%  Similarity=0.135  Sum_probs=71.7

Q ss_pred             ceEEEcC-CCCE-EEEeCCCeEEEEecC-CcE-EEeeeccCcCccCeEEc-CCCCEEEEeCCCCeEEEc--cCC-c--eE
Q 026389           80 EDVCVDR-NGVL-YTATRDGWIKRLHKN-GTW-ENWKLIGGDTLLGITTT-QENEILVCDADKGLLKVT--EEG-V--TV  149 (239)
Q Consensus        80 e~ia~d~-~G~l-y~~~~~g~I~~~~~~-G~~-~~~~~~~~~p~~Gl~~d-~~G~L~v~d~~~g~~~v~--~~g-~--~~  149 (239)
                      .+++|++ +|.+ .+++.|+.|..||.. ++. ..+ ....... .+.+. ++|.++++....|.+++.  .++ .  ..
T Consensus       579 ~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~-~~~~~v~-~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~  656 (793)
T PLN00181        579 WSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTI-KTKANIC-CVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCT  656 (793)
T ss_pred             EEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEE-ecCCCeE-EEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceE
Confidence            4678886 6664 466789999999863 432 222 2223344 56664 567777766666776665  233 1  12


Q ss_pred             EecccCCccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCC-------eEEEecCCCCCcce
Q 026389          150 LASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLN-------ETSILLDSLFFANG  222 (239)
Q Consensus       150 l~~~~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~-------~~~~~~~~l~~pnG  222 (239)
                      +.    +.. .....+.+. ++..+++-+.                 .+.|..||...+       .+..+...-...+.
T Consensus       657 ~~----~h~-~~V~~v~f~-~~~~lvs~s~-----------------D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~  713 (793)
T PLN00181        657 MI----GHS-KTVSYVRFV-DSSTLVSSST-----------------DNTLKLWDLSMSISGINETPLHSFMGHTNVKNF  713 (793)
T ss_pred             ec----CCC-CCEEEEEEe-CCCEEEEEEC-----------------CCEEEEEeCCCCccccCCcceEEEcCCCCCeeE
Confidence            21    110 123556664 5555555433                 466777776422       22233222234567


Q ss_pred             EEEcCCCCEEEEE
Q 026389          223 VALSKDEDYLVVC  235 (239)
Q Consensus       223 ia~s~dg~~lyva  235 (239)
                      +++++++++|...
T Consensus       714 v~~s~~~~~lasg  726 (793)
T PLN00181        714 VGLSVSDGYIATG  726 (793)
T ss_pred             EEEcCCCCEEEEE
Confidence            8888888866544

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=95.05  E-value=1  Score=40.69  Aligned_cols=97  Identities=15%  Similarity=0.232  Sum_probs=61.2

Q ss_pred             cCccCeEEcCCCCEEEEeCCCCeEEEc--cCC--ceEEecccCCccccccccEEEcCCCCEEEEeCCCCcCcccccccce
Q 026389          117 DTLLGITTTQENEILVCDADKGLLKVT--EEG--VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLL  192 (239)
Q Consensus       117 ~p~~Gl~~d~~G~L~v~d~~~g~~~v~--~~g--~~~l~~~~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~  192 (239)
                      .-. ++...+.|.-++..+..+.+.+.  .+|  ..+....  +... .....++.|||.|+.+-..             
T Consensus       305 ~V~-~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~--~s~v-~~ts~~fHpDgLifgtgt~-------------  367 (506)
T KOG0289|consen  305 PVT-GLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDE--TSDV-EYTSAAFHPDGLIFGTGTP-------------  367 (506)
T ss_pred             cce-eeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeec--cccc-eeEEeeEcCCceEEeccCC-------------
Confidence            345 88888999877777777888775  566  3333322  2111 2357899999999888654             


Q ss_pred             eecCCceEEEEeCCCCeEEEecCCCC-CcceEEEcCCCCEEEE
Q 026389          193 EAKPHGKLLKYDPSLNETSILLDSLF-FANGVALSKDEDYLVV  234 (239)
Q Consensus       193 e~~~~g~v~~~d~~~~~~~~~~~~l~-~pnGia~s~dg~~lyv  234 (239)
                          +|.|-.||.+++....-..+-. -...|+|+.+|-+|.+
T Consensus       368 ----d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat  406 (506)
T KOG0289|consen  368 ----DGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLAT  406 (506)
T ss_pred             ----CceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEE
Confidence                5777778876554211122222 2367889888866544

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=94.99  E-value=0.67  Score=39.35  Aligned_cols=131  Identities=9%  Similarity=-0.004  Sum_probs=68.9

Q ss_pred             CCccccccCCCCCCC-CCCCCC-ccc---ccceEeccCC-cCCcceEEEcCCCC-EEEEeCCCeEEEEecC-CcEEEeee
Q 026389           42 PISPDLLLLPPASSA-SLIPTT-SDI---QSVTRLGEGI-LNGPEDVCVDRNGV-LYTATRDGWIKRLHKN-GTWENWKL  113 (239)
Q Consensus        42 ~~~p~~~~~p~~~~~-g~~~~n-~~l---~~~~~l~~g~-~~gPe~ia~d~~G~-ly~~~~~g~I~~~~~~-G~~~~~~~  113 (239)
                      .++-+.|.++.++.+ .+.+-. -++   +..+.+..-. -.+---+.|.|+|. +.+++.+.+|.-+|.- -++..-.+
T Consensus        66 svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~  145 (313)
T KOG1407|consen   66 SVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTARIETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQ  145 (313)
T ss_pred             chhhheeCCCCCcceEEecCCceEEEEEeccCcEEEEeeccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhc
Confidence            566677888777665 222211 111   1111111100 01222367777654 4466788888777742 22211112


Q ss_pred             ccCcCccCeEEcCCCCEEEEeCCCCeEEEc--cCC--ceEEecccCCccccccccEEEcCCCCEEEEeC
Q 026389          114 IGGDTLLGITTTQENEILVCDADKGLLKVT--EEG--VTVLASHVNGSRINLADDLIAATDGSIYFSVA  178 (239)
Q Consensus       114 ~~~~p~~Gl~~d~~G~L~v~d~~~g~~~v~--~~g--~~~l~~~~~g~~~~~pn~l~vd~dG~iy~td~  178 (239)
                      .....+ -+.+..++++++...+.|.+.+-  +.=  +..+..    .+ ..+--|.++|+|+-+.+.+
T Consensus       146 ~~~e~n-e~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~A----H~-snCicI~f~p~GryfA~Gs  208 (313)
T KOG1407|consen  146 FKFEVN-EISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKA----HP-SNCICIEFDPDGRYFATGS  208 (313)
T ss_pred             ccceee-eeeecCCCCEEEEecCCceEEEEecccccccccccc----CC-cceEEEEECCCCceEeecc
Confidence            223445 67777778899998888888775  321  222211    11 2345688999998655543

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=94.90  E-value=0.79  Score=42.05  Aligned_cols=39  Identities=28%  Similarity=0.228  Sum_probs=35.7

Q ss_pred             ceEEEEeCCCCeEEEecCCCCCcceEEEcCCCCEEEEEe
Q 026389          198 GKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCE  236 (239)
Q Consensus       198 g~v~~~d~~~~~~~~~~~~l~~pnGia~s~dg~~lyvad  236 (239)
                      ..|-.||.++++++....++.....+.+++||+++.+++
T Consensus       382 D~l~iyd~~~~e~kr~e~~lg~I~av~vs~dGK~~vvaN  420 (668)
T COG4946         382 DKLGIYDKDGGEVKRIEKDLGNIEAVKVSPDGKKVVVAN  420 (668)
T ss_pred             ceEEEEecCCceEEEeeCCccceEEEEEcCCCcEEEEEc
Confidence            388899999999999999999999999999999888875

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=94.82  E-value=1.8  Score=38.32  Aligned_cols=113  Identities=12%  Similarity=0.127  Sum_probs=69.8

Q ss_pred             cceEEEcCCCCEE-EEeCCCeEEEEecC-CcEE-EeeeccCcCccCeEEcCCCCEEEEeCCCCeEEEc--cC-C-ceEEe
Q 026389           79 PEDVCVDRNGVLY-TATRDGWIKRLHKN-GTWE-NWKLIGGDTLLGITTTQENEILVCDADKGLLKVT--EE-G-VTVLA  151 (239)
Q Consensus        79 Pe~ia~d~~G~ly-~~~~~g~I~~~~~~-G~~~-~~~~~~~~p~~Gl~~d~~G~L~v~d~~~g~~~v~--~~-g-~~~l~  151 (239)
                      -..+.|+.+|.+. +++-+|+|..+..+ |..+ .+......-- =|.+.+.+.++.+-...|.+...  ++ + .+++.
T Consensus       109 Vt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~~die-Wl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~  187 (399)
T KOG0296|consen  109 VTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIE-WLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMS  187 (399)
T ss_pred             eEEEEEccCceEEEecCCCccEEEEEcccCceEEEeecccCceE-EEEecccccEEEeecCCCcEEEEECCCcceeeEec
Confidence            3457777788766 66788988877643 3221 2222333333 46667888888887777777665  45 4 45543


Q ss_pred             cccCCccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEec
Q 026389          152 SHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILL  214 (239)
Q Consensus       152 ~~~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~  214 (239)
                      .    .. ...+--.+-|||.-.++-..                 +|.|..||+++++....+
T Consensus       188 G----h~-~~ct~G~f~pdGKr~~tgy~-----------------dgti~~Wn~ktg~p~~~~  228 (399)
T KOG0296|consen  188 G----HN-SPCTCGEFIPDGKRILTGYD-----------------DGTIIVWNPKTGQPLHKI  228 (399)
T ss_pred             C----CC-CCcccccccCCCceEEEEec-----------------CceEEEEecCCCceeEEe
Confidence            2    11 12455567788955555433                 588999999998765544

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=94.80  E-value=1.1  Score=43.80  Aligned_cols=135  Identities=15%  Similarity=0.199  Sum_probs=77.5

Q ss_pred             cceEEEcCCCCEEE-EeCCCeEEEEec-CCc-EEEeeeccCcCccCeEEcCCCCEEEEeCCCCeEEEc--cCC-c-eEEe
Q 026389           79 PEDVCVDRNGVLYT-ATRDGWIKRLHK-NGT-WENWKLIGGDTLLGITTTQENEILVCDADKGLLKVT--EEG-V-TVLA  151 (239)
Q Consensus        79 Pe~ia~d~~G~ly~-~~~~g~I~~~~~-~G~-~~~~~~~~~~p~~Gl~~d~~G~L~v~d~~~g~~~v~--~~g-~-~~l~  151 (239)
                      -.+++++-+|...+ ++.|-.|..++. |+. ..++....+.-+ ++.++++|++++..+..|.+++.  .++ . ..+.
T Consensus        99 ~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl-~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~  177 (933)
T KOG1274|consen   99 IRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVL-QLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLT  177 (933)
T ss_pred             ceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCcee-eeeEcCCCCEEEEEecCceEEEEEcccchhhhhcc
Confidence            35678888887664 445555555553 332 333333334445 99999999999888888988886  566 2 3332


Q ss_pred             cccCCc--c-ccccccEEEcCCC-CEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEE-ecCCCCC--cceEE
Q 026389          152 SHVNGS--R-INLADDLIAATDG-SIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSI-LLDSLFF--ANGVA  224 (239)
Q Consensus       152 ~~~~g~--~-~~~pn~l~vd~dG-~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~-~~~~l~~--pnGia  224 (239)
                      ......  . -+-.+-++..|+| .+.+--.                  .+.|-.|++++.+..- +.++...  -+-++
T Consensus       178 ~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~------------------d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~  239 (933)
T KOG1274|consen  178 GVDKDNEFILSRICTRLAWHPKGGTLAVPPV------------------DNTVKVYSRKGWELQFKLRDKLSSSKFSDLQ  239 (933)
T ss_pred             cCCccccccccceeeeeeecCCCCeEEeecc------------------CCeEEEEccCCceeheeecccccccceEEEE
Confidence            211110  0 1234567788884 5544332                  2456677776655432 2233222  35577


Q ss_pred             EcCCCCEE
Q 026389          225 LSKDEDYL  232 (239)
Q Consensus       225 ~s~dg~~l  232 (239)
                      |+|.|++|
T Consensus       240 wsPnG~Yi  247 (933)
T KOG1274|consen  240 WSPNGKYI  247 (933)
T ss_pred             EcCCCcEE
Confidence            78887754

>PF00058 Ldl_recept_b: Low-density lipoprotein receptor repeat class B; InterPro: IPR000033 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells

Probab=94.68  E-value=0.1  Score=31.42  Aligned_cols=38  Identities=11%  Similarity=0.150  Sum_probs=27.9

Q ss_pred             CCEEEEeCCCC-eEEEc-cCC--ceEEecccCCccccccccEEEcC
Q 026389          128 NEILVCDADKG-LLKVT-EEG--VTVLASHVNGSRINLADDLIAAT  169 (239)
Q Consensus       128 G~L~v~d~~~g-~~~v~-~~g--~~~l~~~~~g~~~~~pn~l~vd~  169 (239)
                      |+||++|.... .+... .+|  .+++...    .+..|++|+||+
T Consensus         1 ~~iYWtD~~~~~~I~~a~~dGs~~~~vi~~----~l~~P~giaVD~   42 (42)
T PF00058_consen    1 GKIYWTDWSQDPSIERANLDGSNRRTVISD----DLQHPEGIAVDW   42 (42)
T ss_dssp             TEEEEEETTTTEEEEEEETTSTSEEEEEES----STSSEEEEEEET
T ss_pred             CEEEEEECCCCcEEEEEECCCCCeEEEEEC----CCCCcCEEEECC
Confidence            57999999888 66555 577  5555542    267899999985

The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR classB (YWTD) repeat, the structure of which has been solved []. The six YWTD repeats together fold into a six-bladed beta-propeller. Each blade of the propeller consists of four antiparallel beta-strands; the innermost strand of each blade is labeled 1 and the outermost strand, 4. The sequence repeats are offset with respect to the blades of the propeller, such that any given 40-residue YWTD repeat spans strands 24 of one propeller blade and strand 1 of the subsequent blade. This offset ensures circularization of the propeller because the last strand of the final sequence repeat acts as an innermost strand 1 of the blade that harbors strands 24 from the first sequence repeat. The repeat is found in a variety of proteins that include, vitellogenin receptor from Drosophila melanogaster, low-density lipoprotein (LDL) receptor [], preproepidermal growth factor, and nidogen (entactin).; PDB: 3S2K_A 3S8Z_A 3S8V_B 4A0P_A 3SOB_B 3S94_B 4DG6_A 3SOV_A 3SOQ_A 1NPE_A ....

>KOG1215 consensus Low-density lipoprotein receptors containing Ca2+-binding EGF-like domains [Signal transduction mechanisms]

Probab=94.67  E-value=0.92  Score=45.32  Aligned_cols=143  Identities=17%  Similarity=0.192  Sum_probs=93.1

Q ss_pred             eccCCcCCcceEEEcC-CCCEEEEe-CCCeEEEEecCCcE-EEeeec-cCcCccCeEEcCC-CCEEEEeCCC-C-eEEEc
Q 026389           71 LGEGILNGPEDVCVDR-NGVLYTAT-RDGWIKRLHKNGTW-ENWKLI-GGDTLLGITTTQE-NEILVCDADK-G-LLKVT  143 (239)
Q Consensus        71 l~~g~~~gPe~ia~d~-~G~ly~~~-~~g~I~~~~~~G~~-~~~~~~-~~~p~~Gl~~d~~-G~L~v~d~~~-g-~~~v~  143 (239)
                      ...| .-.|+++++|- .+++|.++ ....|...+.+|.. .+.... ...|. .+++++. |.+|++|.+. . +.+..
T Consensus       475 ~~~g-~~~~~~lavD~~~~~~y~tDe~~~~i~v~~~~g~~~~vl~~~~l~~~r-~~~v~p~~g~~~wtd~~~~~~i~ra~  552 (877)
T KOG1215|consen  475 CGDG-LCIPEGLAVDWIGDNIYWTDEGNCLIEVADLDGSSRKVLVSKDLDLPR-SIAVDPEKGLMFWTDWGQPPRIERAS  552 (877)
T ss_pred             eccC-ccccCcEEEEeccCCceecccCCceeEEEEccCCceeEEEecCCCCcc-ceeeccccCeeEEecCCCCchhhhhc
Confidence            3444 67899999997 77899877 56667666656642 222222 26788 8999954 5789999874 1 22223


Q ss_pred             cCC--ceEEecccCCccccccccEEEcCC-CCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEE-EecCCCCC
Q 026389          144 EEG--VTVLASHVNGSRINLADDLIAATD-GSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETS-ILLDSLFF  219 (239)
Q Consensus       144 ~~g--~~~l~~~~~g~~~~~pn~l~vd~d-G~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~-~~~~~l~~  219 (239)
                      .+|  .+.+...    .+..||++++|-. .++|+.|....                -.+.+.+.++++.+ .....+.+
T Consensus       553 ~dg~~~~~l~~~----~~~~p~glt~d~~~~~~yw~d~~~~----------------~~i~~~~~~g~~r~~~~~~~~~~  612 (877)
T KOG1215|consen  553 LDGSERAVLVTN----GILWPNGLTIDYETDRLYWADAKLD----------------YTIESANMDGQNRRVVDSEDLPH  612 (877)
T ss_pred             CCCCCceEEEeC----CccCCCcceEEeecceeEEEcccCC----------------cceeeeecCCCceEEeccccCCC
Confidence            566  4444332    1568999999975 59999997632                13555665544333 44466888


Q ss_pred             cceEEEcCCCCEEEEEeC
Q 026389          220 ANGVALSKDEDYLVVCET  237 (239)
Q Consensus       220 pnGia~s~dg~~lyvadt  237 (239)
                      |.+++...+  ++|..+.
T Consensus       613 p~~~~~~~~--~iyw~d~  628 (877)
T KOG1215|consen  613 PFGLSVFED--YIYWTDW  628 (877)
T ss_pred             ceEEEEecc--eeEEeec
Confidence            999888643  5777664

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=94.65  E-value=0.51  Score=42.17  Aligned_cols=93  Identities=17%  Similarity=0.147  Sum_probs=53.3

Q ss_pred             EEEcCC--CCEEEEeCCCeEEEEec-CCcEEEeeeccCcCccCeEEcCCCCEEEEeCCCCeEEEc-c-CCceEEec--cc
Q 026389           82 VCVDRN--GVLYTATRDGWIKRLHK-NGTWENWKLIGGDTLLGITTTQENEILVCDADKGLLKVT-E-EGVTVLAS--HV  154 (239)
Q Consensus        82 ia~d~~--G~ly~~~~~g~I~~~~~-~G~~~~~~~~~~~p~~Gl~~d~~G~L~v~d~~~g~~~v~-~-~g~~~l~~--~~  154 (239)
                      |+|.|.  ..|..+..|..|..|+. .|+..........-. .+.|+.||.++++......+++. + .| +++.+  ..
T Consensus       137 V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali~l~hpd~i~-S~sfn~dGs~l~TtckDKkvRv~dpr~~-~~v~e~~~h  214 (472)
T KOG0303|consen  137 VQWHPTAPNVLLSAGSDNTVSIWNVGTGEALITLDHPDMVY-SMSFNRDGSLLCTTCKDKKVRVIDPRRG-TVVSEGVAH  214 (472)
T ss_pred             EeecccchhhHhhccCCceEEEEeccCCceeeecCCCCeEE-EEEeccCCceeeeecccceeEEEcCCCC-cEeeecccc
Confidence            555552  22334456778888875 454322222334445 77888999999988777777775 3 34 22222  22


Q ss_pred             CCccccccccEEEcCCCCEEEEeCC
Q 026389          155 NGSRINLADDLIAATDGSIYFSVAS  179 (239)
Q Consensus       155 ~g~~~~~pn~l~vd~dG~iy~td~~  179 (239)
                      +|   ..+.-..+-.+|.|+-|..+
T Consensus       215 eG---~k~~Raifl~~g~i~tTGfs  236 (472)
T KOG0303|consen  215 EG---AKPARAIFLASGKIFTTGFS  236 (472)
T ss_pred             cC---CCcceeEEeccCceeeeccc
Confidence            33   23555667778885555433

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=94.61  E-value=2  Score=34.78  Aligned_cols=95  Identities=15%  Similarity=0.105  Sum_probs=59.2

Q ss_pred             cceEEEcCCCCEE-EE--eCCCeEEEEecCCcEEEeeeccCcCccCeEEcCCCCEEEEeC-C--CCeEEEcc-CCceEEe
Q 026389           79 PEDVCVDRNGVLY-TA--TRDGWIKRLHKNGTWENWKLIGGDTLLGITTTQENEILVCDA-D--KGLLKVTE-EGVTVLA  151 (239)
Q Consensus        79 Pe~ia~d~~G~ly-~~--~~~g~I~~~~~~G~~~~~~~~~~~p~~Gl~~d~~G~L~v~d~-~--~g~~~v~~-~g~~~l~  151 (239)
                      -.+++|+|+|.-+ +.  ....+|..++.+++... .-.....+ .+.++|+|+.+++.. +  .|.+.+.. +..+.+.
T Consensus        62 I~~~~WsP~g~~favi~g~~~~~v~lyd~~~~~i~-~~~~~~~n-~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~  139 (194)
T PF08662_consen   62 IHDVAWSPNGNEFAVIYGSMPAKVTLYDVKGKKIF-SFGTQPRN-TISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKIS  139 (194)
T ss_pred             eEEEEECcCCCEEEEEEccCCcccEEEcCcccEeE-eecCCCce-EEEECCCCCEEEEEEccCCCcEEEEEECCCCEEee
Confidence            5678999988644 32  34568888887655322 12234556 899999998666543 2  35576653 2333333


Q ss_pred             cccCCccccccccEEEcCCCCEEEEeCC
Q 026389          152 SHVNGSRINLADDLIAATDGSIYFSVAS  179 (239)
Q Consensus       152 ~~~~g~~~~~pn~l~vd~dG~iy~td~~  179 (239)
                      ...    ......++.+|||+.++|..+
T Consensus       140 ~~~----~~~~t~~~WsPdGr~~~ta~t  163 (194)
T PF08662_consen  140 TFE----HSDATDVEWSPDGRYLATATT  163 (194)
T ss_pred             ccc----cCcEEEEEEcCCCCEEEEEEe
Confidence            221    123689999999988777654

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=94.60  E-value=1.1  Score=38.18  Aligned_cols=99  Identities=16%  Similarity=0.201  Sum_probs=53.1

Q ss_pred             EEEEeCCCeEEEEec-CCc-EEEeeeccCcCccCeEEcCCC-CEEEEeCCCCeEEEccCC-ceEEecccCCccccccccE
Q 026389           90 LYTATRDGWIKRLHK-NGT-WENWKLIGGDTLLGITTTQEN-EILVCDADKGLLKVTEEG-VTVLASHVNGSRINLADDL  165 (239)
Q Consensus        90 ly~~~~~g~I~~~~~-~G~-~~~~~~~~~~p~~Gl~~d~~G-~L~v~d~~~g~~~v~~~g-~~~l~~~~~g~~~~~pn~l  165 (239)
                      +.++...|.++.++. .|+ ...|......-- --..|.++ .+|...++...+.+|..- .-+......|..+..   -
T Consensus        66 VV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~-~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~s---P  141 (354)
T KOG4649|consen   66 VVLGCYSGGLYFLCVKTGSQIWNFVILETVKV-RAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVS---P  141 (354)
T ss_pred             EEEEEccCcEEEEEecchhheeeeeehhhhcc-ceEEcCCCceEEEecCCCcEEEecccccceEEecccCCceecc---c
Confidence            445566667766653 342 222211111111 12345555 455566666777777322 233333444544433   3


Q ss_pred             EEcC-CCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeE
Q 026389          166 IAAT-DGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNET  210 (239)
Q Consensus       166 ~vd~-dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~  210 (239)
                      ++++ +|.||++-.+                  |+|++..++....
T Consensus       142 ~i~~g~~sly~a~t~------------------G~vlavt~~~~~~  169 (354)
T KOG4649|consen  142 VIAPGDGSLYAAITA------------------GAVLAVTKNPYSS  169 (354)
T ss_pred             eecCCCceEEEEecc------------------ceEEEEccCCCCc
Confidence            7788 7899999765                  7788877765533

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=94.56  E-value=0.24  Score=46.81  Aligned_cols=134  Identities=20%  Similarity=0.238  Sum_probs=75.6

Q ss_pred             cceEEEcC--CCCEEEEeCCCeEE--EEecCCcE------EEee-eccCcCccCeEEcCCC-CEEEEeCCCCeEEEc--c
Q 026389           79 PEDVCVDR--NGVLYTATRDGWIK--RLHKNGTW------ENWK-LIGGDTLLGITTTQEN-EILVCDADKGLLKVT--E  144 (239)
Q Consensus        79 Pe~ia~d~--~G~ly~~~~~g~I~--~~~~~G~~------~~~~-~~~~~p~~Gl~~d~~G-~L~v~d~~~g~~~v~--~  144 (239)
                      -.++.|||  +.+|-++..+|+|.  |+..+|-.      +... ..+.... .|+|.+-- +++....+.-.+++.  .
T Consensus       630 vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~-slRfHPLAadvLa~asyd~Ti~lWDl~  708 (1012)
T KOG1445|consen  630 VTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKIT-SLRFHPLAADVLAVASYDSTIELWDLA  708 (1012)
T ss_pred             eeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEE-EEEecchhhhHhhhhhccceeeeeehh
Confidence            34678887  45788888888764  44444411      1111 1112233 45555322 333333444455554  3


Q ss_pred             CC--ceEEecccCCccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecCC-C--CC
Q 026389          145 EG--VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDS-L--FF  219 (239)
Q Consensus       145 ~g--~~~l~~~~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~~-l--~~  219 (239)
                      ++  ...+....+     ..-+++..+||+...|-..                 .|+|.+|.|.+++..+.... .  ..
T Consensus       709 ~~~~~~~l~gHtd-----qIf~~AWSpdGr~~AtVcK-----------------Dg~~rVy~Prs~e~pv~Eg~gpvgtR  766 (1012)
T KOG1445|consen  709 NAKLYSRLVGHTD-----QIFGIAWSPDGRRIATVCK-----------------DGTLRVYEPRSREQPVYEGKGPVGTR  766 (1012)
T ss_pred             hhhhhheeccCcC-----ceeEEEECCCCcceeeeec-----------------CceEEEeCCCCCCCccccCCCCccCc
Confidence            44  333333322     2568999999998888754                 68999999987765444321 1  22


Q ss_pred             cceEEEcCCCCEEEEE
Q 026389          220 ANGVALSKDEDYLVVC  235 (239)
Q Consensus       220 pnGia~s~dg~~lyva  235 (239)
                      ..-|.|.=||++++|+
T Consensus       767 gARi~wacdgr~viv~  782 (1012)
T KOG1445|consen  767 GARILWACDGRIVIVV  782 (1012)
T ss_pred             ceeEEEEecCcEEEEe
Confidence            2336677788877765

>PRK13616 lipoprotein LpqB; Provisional

Probab=94.55  E-value=2.9  Score=40.00  Aligned_cols=137  Identities=14%  Similarity=0.084  Sum_probs=73.1

Q ss_pred             CCcceEEEcCCCCE--EEEe-------CCCeEEEEecCCcEEEeeeccCcCccCeEEcCCC-CEEEEeCCCCeEEEc-cC
Q 026389           77 NGPEDVCVDRNGVL--YTAT-------RDGWIKRLHKNGTWENWKLIGGDTLLGITTTQEN-EILVCDADKGLLKVT-EE  145 (239)
Q Consensus        77 ~gPe~ia~d~~G~l--y~~~-------~~g~I~~~~~~G~~~~~~~~~~~p~~Gl~~d~~G-~L~v~d~~~g~~~v~-~~  145 (239)
                      ..+.+.+++++|.-  |+..       ...+|+.++.+|+.+.+.. +..-. .-.++++| .||+......+.++. .+
T Consensus       350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~lt~-g~~~t-~PsWspDG~~lw~v~dg~~~~~v~~~~  427 (591)
T PRK13616        350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQVLE-GHSLT-RPSWSLDADAVWVVVDGNTVVRVIRDP  427 (591)
T ss_pred             cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcceeeec-CCCCC-CceECCCCCceEEEecCcceEEEeccC
Confidence            45667789998853  4431       2347777776554443322 22222 56788996 577664443444443 22


Q ss_pred             C-ceEEecccCCcc-----ccccccEEEcCCC-CEEEEeCCCCcCcccccccceeecCCceEEE---EeCCCCeEEE---
Q 026389          146 G-VTVLASHVNGSR-----INLADDLIAATDG-SIYFSVASTKFGLHNWGLDLLEAKPHGKLLK---YDPSLNETSI---  212 (239)
Q Consensus       146 g-~~~l~~~~~g~~-----~~~pn~l~vd~dG-~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~---~d~~~~~~~~---  212 (239)
                      + -++.....++..     -..+..+.+.+|| +|.|.-.                   |+|+.   ...++|+.+.   
T Consensus       428 ~~gql~~~~vd~ge~~~~~~g~Issl~wSpDG~RiA~i~~-------------------g~v~Va~Vvr~~~G~~~l~~~  488 (591)
T PRK13616        428 ATGQLARTPVDASAVASRVPGPISELQLSRDGVRAAMIIG-------------------GKVYLAVVEQTEDGQYALTNP  488 (591)
T ss_pred             CCceEEEEeccCchhhhccCCCcCeEEECCCCCEEEEEEC-------------------CEEEEEEEEeCCCCceeeccc
Confidence            2 222111111111     1247899999999 6766542                   23333   2223344322   


Q ss_pred             --ecCCCCC-cceEEEcCCCCEEEEE
Q 026389          213 --LLDSLFF-ANGVALSKDEDYLVVC  235 (239)
Q Consensus       213 --~~~~l~~-pnGia~s~dg~~lyva  235 (239)
                        +..++.. +..+++..|++ |+|.
T Consensus       489 ~~l~~~l~~~~~~l~W~~~~~-L~V~  513 (591)
T PRK13616        489 REVGPGLGDTAVSLDWRTGDS-LVVG  513 (591)
T ss_pred             EEeecccCCccccceEecCCE-EEEE
Confidence              4455554 58889988887 5554

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=94.52  E-value=2.3  Score=36.31  Aligned_cols=145  Identities=14%  Similarity=0.123  Sum_probs=79.0

Q ss_pred             cceEeccCCcCCcc----eEEEcCC-CCEEEEeCCCeEEEEec-CCcEEEeeeccCcCccCeEEcCCCCEEE--EeCCC-
Q 026389           67 SVTRLGEGILNGPE----DVCVDRN-GVLYTATRDGWIKRLHK-NGTWENWKLIGGDTLLGITTTQENEILV--CDADK-  137 (239)
Q Consensus        67 ~~~~l~~g~~~gPe----~ia~d~~-G~ly~~~~~g~I~~~~~-~G~~~~~~~~~~~p~~Gl~~d~~G~L~v--~d~~~-  137 (239)
                      +.|+|++  ..|=.    ++.+|.+ ..+.+++.|..+..||. .|+.....+...... .+.|+.+|++.+  +|... 
T Consensus        41 nGerlGt--y~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k~~~~Vk-~~~F~~~gn~~l~~tD~~mg  117 (327)
T KOG0643|consen   41 NGERLGT--YDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWKTNSPVK-RVDFSFGGNLILASTDKQMG  117 (327)
T ss_pred             CCceeee--ecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEeecCCeeE-EEeeccCCcEEEEEehhhcC
Confidence            3566654  33333    3455543 46778889998888884 676433233333344 788888887544  44322 


Q ss_pred             --CeEEEc--cC------CceEEecccCCccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCC
Q 026389          138 --GLLKVT--EE------GVTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSL  207 (239)
Q Consensus       138 --g~~~v~--~~------g~~~l~~~~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~  207 (239)
                        +.+.+.  ++      +.+.+....  .+-..++-...++-|...|+..                 ..|.|-+||..+
T Consensus       118 ~~~~v~~fdi~~~~~~~~s~ep~~kI~--t~~skit~a~Wg~l~~~ii~Gh-----------------e~G~is~~da~~  178 (327)
T KOG0643|consen  118 YTCFVSVFDIRDDSSDIDSEEPYLKIP--TPDSKITSALWGPLGETIIAGH-----------------EDGSISIYDART  178 (327)
T ss_pred             cceEEEEEEccCChhhhcccCceEEec--CCccceeeeeecccCCEEEEec-----------------CCCcEEEEEccc
Confidence              333332  11      111111000  0112345555566665555433                 369999999987


Q ss_pred             CeEEEec--CCCCCcceEEEcCCCCEEE
Q 026389          208 NETSILL--DSLFFANGVALSKDEDYLV  233 (239)
Q Consensus       208 ~~~~~~~--~~l~~pnGia~s~dg~~ly  233 (239)
                      |+..+-.  ..-...|.|++++|..++.
T Consensus       179 g~~~v~s~~~h~~~Ind~q~s~d~T~Fi  206 (327)
T KOG0643|consen  179 GKELVDSDEEHSSKINDLQFSRDRTYFI  206 (327)
T ss_pred             CceeeechhhhccccccccccCCcceEE
Confidence            7543322  1234679999999987543

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=94.47  E-value=2.7  Score=35.77  Aligned_cols=134  Identities=14%  Similarity=0.196  Sum_probs=69.5

Q ss_pred             CcceEEEcC-C-CCEEEEeCCCeEEEEec-CCcEEEeeeccCcCccCeEEcCCCC-EEEEeCCCCeEEEccCCceEEecc
Q 026389           78 GPEDVCVDR-N-GVLYTATRDGWIKRLHK-NGTWENWKLIGGDTLLGITTTQENE-ILVCDADKGLLKVTEEGVTVLASH  153 (239)
Q Consensus        78 gPe~ia~d~-~-G~ly~~~~~g~I~~~~~-~G~~~~~~~~~~~p~~Gl~~d~~G~-L~v~d~~~g~~~v~~~g~~~l~~~  153 (239)
                      .-+.++|++ + ..+.+++.+..|.+||. .++-.......+.-. -+...++|+ +.+.+....+..+|....+++...
T Consensus        66 svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~~~~eni-~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~  144 (313)
T KOG1407|consen   66 SVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTARIETKGENI-NITWSPDGEYIAVGNKDDRITFIDARTYKIVNEE  144 (313)
T ss_pred             chhhheeCCCCCcceEEecCCceEEEEEeccCcEEEEeeccCcce-EEEEcCCCCEEEEecCcccEEEEEecccceeehh
Confidence            345688987 3 34556678888988884 444322222223333 466777775 444444444445552112222111


Q ss_pred             cCCccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecCCCCCc-c--eEEEcCCCC
Q 026389          154 VNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFA-N--GVALSKDED  230 (239)
Q Consensus       154 ~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~~l~~p-n--Gia~s~dg~  230 (239)
                         +-..+.|.+...-++.++|-...                 .|.|-...-.  +++.+.+--.+| |  -|.|+|+|+
T Consensus       145 ---~~~~e~ne~~w~~~nd~Fflt~G-----------------lG~v~ILsyp--sLkpv~si~AH~snCicI~f~p~Gr  202 (313)
T KOG1407|consen  145 ---QFKFEVNEISWNNSNDLFFLTNG-----------------LGCVEILSYP--SLKPVQSIKAHPSNCICIEFDPDGR  202 (313)
T ss_pred             ---cccceeeeeeecCCCCEEEEecC-----------------CceEEEEecc--ccccccccccCCcceEEEEECCCCc
Confidence               11234678888877888776543                 3555443322  222222211222 3  366899999


Q ss_pred             EEEE
Q 026389          231 YLVV  234 (239)
Q Consensus       231 ~lyv  234 (239)
                      ++-+
T Consensus       203 yfA~  206 (313)
T KOG1407|consen  203 YFAT  206 (313)
T ss_pred             eEee
Confidence            7643

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=94.34  E-value=1.5  Score=39.74  Aligned_cols=97  Identities=14%  Similarity=0.156  Sum_probs=58.0

Q ss_pred             ceEEEcCCCCEEEEeCCCeEEEEecCCcE-E--Eeeecc----C-cCccCeEEcCCCCEEEEeCCCCeEEEc-cCCceEE
Q 026389           80 EDVCVDRNGVLYTATRDGWIKRLHKNGTW-E--NWKLIG----G-DTLLGITTTQENEILVCDADKGLLKVT-EEGVTVL  150 (239)
Q Consensus        80 e~ia~d~~G~ly~~~~~g~I~~~~~~G~~-~--~~~~~~----~-~p~~Gl~~d~~G~L~v~d~~~g~~~v~-~~g~~~l  150 (239)
                      .++++.++|.+|+....|.+++-+.+|+. +  .|....    + ..+ ++.+..++.+|++-. .|++... +.|...-
T Consensus       284 ~~v~~~~dg~l~l~g~~G~l~~S~d~G~~~~~~~f~~~~~~~~~~~l~-~v~~~~d~~~~a~G~-~G~v~~s~D~G~tW~  361 (398)
T PLN00033        284 QNMGWRADGGLWLLTRGGGLYVSKGTGLTEEDFDFEEADIKSRGFGIL-DVGYRSKKEAWAAGG-SGILLRSTDGGKSWK  361 (398)
T ss_pred             eeeeEcCCCCEEEEeCCceEEEecCCCCcccccceeecccCCCCcceE-EEEEcCCCcEEEEEC-CCcEEEeCCCCccee
Confidence            36778888999988888888887666642 1  333221    1 234 677878888888865 4666665 4443321


Q ss_pred             ecc-cCCccccccccEEEcCCCCEEEEeCC
Q 026389          151 ASH-VNGSRINLADDLIAATDGSIYFSVAS  179 (239)
Q Consensus       151 ~~~-~~g~~~~~pn~l~vd~dG~iy~td~~  179 (239)
                      ... ..+.+ .....+.+..+++.|++-..
T Consensus       362 ~~~~~~~~~-~~ly~v~f~~~~~g~~~G~~  390 (398)
T PLN00033        362 RDKGADNIA-ANLYSVKFFDDKKGFVLGND  390 (398)
T ss_pred             EccccCCCC-cceeEEEEcCCCceEEEeCC
Confidence            111 11111 12347777777888887643

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=94.31  E-value=1.2  Score=41.04  Aligned_cols=99  Identities=14%  Similarity=0.095  Sum_probs=64.7

Q ss_pred             CcceEEEcCCCCEEEEeCCCeEEEEecCCcEEEeeeccCcCccCeEEcCCCCEEEEeCCCCe---EEEccCC-ceEEecc
Q 026389           78 GPEDVCVDRNGVLYTATRDGWIKRLHKNGTWENWKLIGGDTLLGITTTQENEILVCDADKGL---LKVTEEG-VTVLASH  153 (239)
Q Consensus        78 gPe~ia~d~~G~ly~~~~~g~I~~~~~~G~~~~~~~~~~~p~~Gl~~d~~G~L~v~d~~~g~---~~v~~~g-~~~l~~~  153 (239)
                      --++..|+|.|.+.++...|+.+.+|.+.+...-....+.|++-+++.++|..+...+..+.   ++++.+| .-..+..
T Consensus       409 ~~~~~~fhpsg~va~Gt~~G~w~V~d~e~~~lv~~~~d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k  488 (626)
T KOG2106|consen  409 PAECADFHPSGVVAVGTATGRWFVLDTETQDLVTIHTDNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGK  488 (626)
T ss_pred             ceeEeeccCcceEEEeeccceEEEEecccceeEEEEecCCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeee
Confidence            44667888888777888888888888655433333444777757888999976555444443   3445677 2222333


Q ss_pred             cCCccccccccEEEcCCCCEEEEeCC
Q 026389          154 VNGSRINLADDLIAATDGSIYFSVAS  179 (239)
Q Consensus       154 ~~g~~~~~pn~l~vd~dG~iy~td~~  179 (239)
                      ..|   .+...++.++|++...+.+.
T Consensus       489 ~~g---s~ithLDwS~Ds~~~~~~S~  511 (626)
T KOG2106|consen  489 CSG---SPITHLDWSSDSQFLVSNSG  511 (626)
T ss_pred             ecC---ceeEEeeecCCCceEEeccC
Confidence            344   44677889999988888765

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=94.24  E-value=0.43  Score=41.49  Aligned_cols=136  Identities=14%  Similarity=0.246  Sum_probs=79.5

Q ss_pred             ceEEEcCCCCEE-EEeCCCeEEEEecCCc-----EEEeeeccCcCccCeEEcCCCCEEEEeCCCCeEEEcc-CCceEEec
Q 026389           80 EDVCVDRNGVLY-TATRDGWIKRLHKNGT-----WENWKLIGGDTLLGITTTQENEILVCDADKGLLKVTE-EGVTVLAS  152 (239)
Q Consensus        80 e~ia~d~~G~ly-~~~~~g~I~~~~~~G~-----~~~~~~~~~~p~~Gl~~d~~G~L~v~d~~~g~~~v~~-~g~~~l~~  152 (239)
                      ..+.|.|...|. .++.|+.|..+|..-.     .+++.+  ..|.+.|.|.+.|..+.......++++.. +-.+-++.
T Consensus       176 n~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd--~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~Qcfvs  253 (430)
T KOG0640|consen  176 NDLDFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQD--TEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVS  253 (430)
T ss_pred             cceeecchhheEEeccCCCeEEEEecccHHHHHHHHHhhc--cceeeeEeecCCCceEEEecCCCceeEEeccceeEeee
Confidence            356677755555 5558888888874221     122221  23333888999997655555555666553 22233332


Q ss_pred             c-cCCccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeE-EEe--cCCCCCcceEEEcCC
Q 026389          153 H-VNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNET-SIL--LDSLFFANGVALSKD  228 (239)
Q Consensus       153 ~-~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~-~~~--~~~l~~pnGia~s~d  228 (239)
                      . .+.+--...+.+...+.|++|+|.+.                 .|.|-.||.-+++- +.+  +.+........|+.+
T Consensus       254 anPd~qht~ai~~V~Ys~t~~lYvTaSk-----------------DG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn  316 (430)
T KOG0640|consen  254 ANPDDQHTGAITQVRYSSTGSLYVTASK-----------------DGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKN  316 (430)
T ss_pred             cCcccccccceeEEEecCCccEEEEecc-----------------CCcEEeeccccHHHHHHHHhhcCCceeeeEEEccC
Confidence            1 12222235788899999999999876                 57787787654432 111  123334456778888


Q ss_pred             CCEEEE
Q 026389          229 EDYLVV  234 (239)
Q Consensus       229 g~~lyv  234 (239)
                      |++++-
T Consensus       317 ~kyiLs  322 (430)
T KOG0640|consen  317 GKYILS  322 (430)
T ss_pred             CeEEee
Confidence            886653

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=94.19  E-value=0.31  Score=44.37  Aligned_cols=137  Identities=14%  Similarity=0.106  Sum_probs=89.6

Q ss_pred             cCCcCCcceEEEcC-CCCEEEE-eCCCeEEEEec--CCc-EEEeeeccCcCccCeEEcCCCCEEEEeCCCCeEEEc--cC
Q 026389           73 EGILNGPEDVCVDR-NGVLYTA-TRDGWIKRLHK--NGT-WENWKLIGGDTLLGITTTQENEILVCDADKGLLKVT--EE  145 (239)
Q Consensus        73 ~g~~~gPe~ia~d~-~G~ly~~-~~~g~I~~~~~--~G~-~~~~~~~~~~p~~Gl~~d~~G~L~v~d~~~g~~~v~--~~  145 (239)
                      .|--.+-..+-|-+ .|.|+.+ ..|++|+.|+.  +++ +++|... ..|...+++..+|.=+.+-++.+.+++.  +.
T Consensus       211 ~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH-~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtET  289 (503)
T KOG0282|consen  211 SGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGH-RKPVRDASFNNCGTSFLSASFDRFLKLWDTET  289 (503)
T ss_pred             cCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcc-hhhhhhhhccccCCeeeeeecceeeeeecccc
Confidence            33334445556666 7887754 48899988874  444 3444322 2333378888999777777777777775  57


Q ss_pred             C-ceEEecccCCccccccccEEEcCCC-CEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEE-ecCCCCCcce
Q 026389          146 G-VTVLASHVNGSRINLADDLIAATDG-SIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSI-LLDSLFFANG  222 (239)
Q Consensus       146 g-~~~l~~~~~g~~~~~pn~l~vd~dG-~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~-~~~~l~~pnG  222 (239)
                      | ...-..  .+   .-|+-+.+.||+ +++++..+                 +++|..||..++++.. .-..+..-+.
T Consensus       290 G~~~~~f~--~~---~~~~cvkf~pd~~n~fl~G~s-----------------d~ki~~wDiRs~kvvqeYd~hLg~i~~  347 (503)
T KOG0282|consen  290 GQVLSRFH--LD---KVPTCVKFHPDNQNIFLVGGS-----------------DKKIRQWDIRSGKVVQEYDRHLGAILD  347 (503)
T ss_pred             ceEEEEEe--cC---CCceeeecCCCCCcEEEEecC-----------------CCcEEEEeccchHHHHHHHhhhhheee
Confidence            7 322221  12   247788899998 88888776                 6899999998887422 2245666777


Q ss_pred             EEEcCCCCEE
Q 026389          223 VALSKDEDYL  232 (239)
Q Consensus       223 ia~s~dg~~l  232 (239)
                      |.|-++|+.+
T Consensus       348 i~F~~~g~rF  357 (503)
T KOG0282|consen  348 ITFVDEGRRF  357 (503)
T ss_pred             eEEccCCceE
Confidence            8887777754

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=94.17  E-value=1.3  Score=42.47  Aligned_cols=128  Identities=12%  Similarity=0.098  Sum_probs=78.8

Q ss_pred             EEEcCCCCEEEEeCCCeEEEEec-CCcEE-Eee-ec-cCcCccCeEEcCCCCEEEEeCCCCeEEEc--cCC--ceEEecc
Q 026389           82 VCVDRNGVLYTATRDGWIKRLHK-NGTWE-NWK-LI-GGDTLLGITTTQENEILVCDADKGLLKVT--EEG--VTVLASH  153 (239)
Q Consensus        82 ia~d~~G~ly~~~~~g~I~~~~~-~G~~~-~~~-~~-~~~p~~Gl~~d~~G~L~v~d~~~g~~~v~--~~g--~~~l~~~  153 (239)
                      ++|+++|....+.-..+|..+|. +|+.. ... .. ...-. .+++++|++.+++-...+++++.  +.|  ++.+...
T Consensus        25 ~~~s~nG~~L~t~~~d~Vi~idv~t~~~~l~s~~~ed~d~it-a~~l~~d~~~L~~a~rs~llrv~~L~tgk~irswKa~  103 (775)
T KOG0319|consen   25 VAWSSNGQHLYTACGDRVIIIDVATGSIALPSGSNEDEDEIT-ALALTPDEEVLVTASRSQLLRVWSLPTGKLIRSWKAI  103 (775)
T ss_pred             eeECCCCCEEEEecCceEEEEEccCCceecccCCccchhhhh-eeeecCCccEEEEeeccceEEEEEcccchHhHhHhhc
Confidence            99999997665554557777763 45542 111 11 12233 78888998766666666777776  556  3333221


Q ss_pred             cCCccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecCCCCC-cceEEEcCCCCE
Q 026389          154 VNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFF-ANGVALSKDEDY  231 (239)
Q Consensus       154 ~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~~l~~-pnGia~s~dg~~  231 (239)
                      -++ |   .-.+++++.|.+.-+-..                 .|++-.+|.+.+..+.-..|+.. ...+.|.|+-.+
T Consensus       104 He~-P---vi~ma~~~~g~LlAtgga-----------------D~~v~VWdi~~~~~th~fkG~gGvVssl~F~~~~~~  161 (775)
T KOG0319|consen  104 HEA-P---VITMAFDPTGTLLATGGA-----------------DGRVKVWDIKNGYCTHSFKGHGGVVSSLLFHPHWNR  161 (775)
T ss_pred             cCC-C---eEEEEEcCCCceEEeccc-----------------cceEEEEEeeCCEEEEEecCCCceEEEEEeCCccch
Confidence            122 2   246889998866555433                 58888899887887777776443 355666666543

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=94.04  E-value=0.65  Score=42.24  Aligned_cols=137  Identities=18%  Similarity=0.229  Sum_probs=78.9

Q ss_pred             cceEEEcCCCCEE-EEeCCCeEEEEec-CCcEEEeeeccCcCccCeEEcCCCC-EEEEeCCCCeEEEc-c-CC-ceEEec
Q 026389           79 PEDVCVDRNGVLY-TATRDGWIKRLHK-NGTWENWKLIGGDTLLGITTTQENE-ILVCDADKGLLKVT-E-EG-VTVLAS  152 (239)
Q Consensus        79 Pe~ia~d~~G~ly-~~~~~g~I~~~~~-~G~~~~~~~~~~~p~~Gl~~d~~G~-L~v~d~~~g~~~v~-~-~g-~~~l~~  152 (239)
                      -|-+.+.+++.+. +....|.|+.+.. ++++..-....|..- ++.|+.+|+ ||++..+..++..+ . .. ...+.+
T Consensus       306 ~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~KieG~v~-~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D  384 (514)
T KOG2055|consen  306 MERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIEGVVS-DFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVD  384 (514)
T ss_pred             hheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeeccEEe-eEEEecCCcEEEEEcCCceEEEEecCCcceEEEEee
Confidence            3456777777755 3347888888864 455433334456666 889998885 55555444444444 2 22 333322


Q ss_pred             ccCCccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCe----EE--EecCCCC-CcceEEE
Q 026389          153 HVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNE----TS--ILLDSLF-FANGVAL  225 (239)
Q Consensus       153 ~~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~----~~--~~~~~l~-~pnGia~  225 (239)
                        +|.  .+-..++.+.+|. |++..+                ..|-|-.||.++-.    .+  .-++++. ..+.|+|
T Consensus       385 --~G~--v~gts~~~S~ng~-ylA~GS----------------~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~F  443 (514)
T KOG2055|consen  385 --DGS--VHGTSLCISLNGS-YLATGS----------------DSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQF  443 (514)
T ss_pred             --cCc--cceeeeeecCCCc-eEEecc----------------CcceEEEeccchhhccCCCCchhhhhhhheeeeeeee
Confidence              221  2345678888898 554433                25778888854321    11  1123332 3478999


Q ss_pred             cCCCCEEEEEeC
Q 026389          226 SKDEDYLVVCET  237 (239)
Q Consensus       226 s~dg~~lyvadt  237 (239)
                      ++|.+.|-++.+
T Consensus       444 n~d~qiLAiaS~  455 (514)
T KOG2055|consen  444 NHDAQILAIASR  455 (514)
T ss_pred             Ccchhhhhhhhh
Confidence            999987765543

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=94.00  E-value=1.6  Score=36.62  Aligned_cols=115  Identities=11%  Similarity=0.127  Sum_probs=73.4

Q ss_pred             eCCCeEEEEec-CCcE-EEeeeccCcCccCeEEcCCCCEEEEeCCCCeEEEc--cCC----ceEEecccCCccccccccE
Q 026389           94 TRDGWIKRLHK-NGTW-ENWKLIGGDTLLGITTTQENEILVCDADKGLLKVT--EEG----VTVLASHVNGSRINLADDL  165 (239)
Q Consensus        94 ~~~g~I~~~~~-~G~~-~~~~~~~~~p~~Gl~~d~~G~L~v~d~~~g~~~v~--~~g----~~~l~~~~~g~~~~~pn~l  165 (239)
                      ..|..|..||. .|++ +.|....+..+ .++|+.+-.++++.+....+++.  ...    ++++.+..++     ... 
T Consensus        78 GgDk~v~vwDV~TGkv~Rr~rgH~aqVN-tV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~-----V~S-  150 (307)
T KOG0316|consen   78 GGDKAVQVWDVNTGKVDRRFRGHLAQVN-TVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDG-----VSS-  150 (307)
T ss_pred             CCCceEEEEEcccCeeeeecccccceee-EEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCc-----eeE-
Confidence            36777888885 5664 56666677788 89998777788777666666654  332    3333332222     122 


Q ss_pred             EEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecCCCCCc-ceEEEcCCCCEEEEE
Q 026389          166 IAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFA-NGVALSKDEDYLVVC  235 (239)
Q Consensus       166 ~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~~l~~p-nGia~s~dg~~lyva  235 (239)
                       |+-.+..+++.+                 -.|++-.||...|+.  ..+.+..| |.+.|++|++.+++.
T Consensus       151 -i~v~~heIvaGS-----------------~DGtvRtydiR~G~l--~sDy~g~pit~vs~s~d~nc~La~  201 (307)
T KOG0316|consen  151 -IDVAEHEIVAGS-----------------VDGTVRTYDIRKGTL--SSDYFGHPITSVSFSKDGNCSLAS  201 (307)
T ss_pred             -EEecccEEEeec-----------------cCCcEEEEEeeccee--ehhhcCCcceeEEecCCCCEEEEe
Confidence             222333444433                 369999999876653  34556666 889999999987765

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=93.98  E-value=0.72  Score=41.14  Aligned_cols=122  Identities=11%  Similarity=0.018  Sum_probs=76.2

Q ss_pred             CCEEEEeCCCeEEEEecCCcE---EEeeeccCcCccCeEEcCCCCEEEEeCCCCeEEEc--cCC--ceEEecccCCcccc
Q 026389           88 GVLYTATRDGWIKRLHKNGTW---ENWKLIGGDTLLGITTTQENEILVCDADKGLLKVT--EEG--VTVLASHVNGSRIN  160 (239)
Q Consensus        88 G~ly~~~~~g~I~~~~~~G~~---~~~~~~~~~p~~Gl~~d~~G~L~v~d~~~g~~~v~--~~g--~~~l~~~~~g~~~~  160 (239)
                      .++..++.|..++.|++....   +.......--+ -+.|.|||+.+++.+...-+++.  .+|  ...+....     .
T Consensus       337 erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn-~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv-----~  410 (480)
T KOG0271|consen  337 ERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVN-HVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHV-----A  410 (480)
T ss_pred             ceeEEecCCceEEEecccccccchhhhhchhhhee-eEEECCCccEEEEeecccceeeeeCCCcchhhhhhhcc-----c
Confidence            356677788999999874322   11112223456 78899999888777766677765  456  44443222     2


Q ss_pred             ccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecCC-CCCcceEEEcCCCCEE
Q 026389          161 LADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDS-LFFANGVALSKDEDYL  232 (239)
Q Consensus       161 ~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~~-l~~pnGia~s~dg~~l  232 (239)
                      ...-++...|-++.++.+.                 .-.|-.|+-.++++..=+.+ --...++-++|||+.+
T Consensus       411 ~VYqvawsaDsRLlVS~Sk-----------------DsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG~rV  466 (480)
T KOG0271|consen  411 AVYQVAWSADSRLLVSGSK-----------------DSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPDGQRV  466 (480)
T ss_pred             eeEEEEeccCccEEEEcCC-----------------CceEEEEEeeeeeecccCCCCCceEEEEEecCCCcee
Confidence            3567888889999998776                 23455566655554332221 2234678889999854

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=93.98  E-value=3.4  Score=34.95  Aligned_cols=139  Identities=15%  Similarity=0.085  Sum_probs=76.6

Q ss_pred             CcceEEEcCCCCEE--EE--eCCCeEEEEecCCcEEEeeeccCcCccCeEEcCCCCEEEEeCCCCeEEEc---cCC-c-e
Q 026389           78 GPEDVCVDRNGVLY--TA--TRDGWIKRLHKNGTWENWKLIGGDTLLGITTTQENEILVCDADKGLLKVT---EEG-V-T  148 (239)
Q Consensus        78 gPe~ia~d~~G~ly--~~--~~~g~I~~~~~~G~~~~~~~~~~~p~~Gl~~d~~G~L~v~d~~~g~~~v~---~~g-~-~  148 (239)
                      .++..++.++|..+  +.  ....+++....++....+. .+.... .-.+|++|.+|+.+......++.   .+| . .
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~-~g~~l~-~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~  102 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVL-TGGSLT-RPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEP  102 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeec-cCCccc-cccccCCCCEEEEEcCCCceEEEEecCCCccee
Confidence            56777999988755  33  2345677776666554433 223333 67789999999998765554433   344 2 2


Q ss_pred             EEecccCCccccccccEEEcCCC-CEE-EEeCCCCcCcccccccceeecCCceEEEE----eCCC------CeEEEecCC
Q 026389          149 VLASHVNGSRINLADDLIAATDG-SIY-FSVASTKFGLHNWGLDLLEAKPHGKLLKY----DPSL------NETSILLDS  216 (239)
Q Consensus       149 ~l~~~~~g~~~~~pn~l~vd~dG-~iy-~td~~~~~~~~~~~~~~~e~~~~g~v~~~----d~~~------~~~~~~~~~  216 (239)
                      +-.+......  ....+.+++|| ++- +....                ..++|+.-    |.++      ...++....
T Consensus       103 ~~v~~~~~~~--~I~~l~vSpDG~RvA~v~~~~----------------~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~  164 (253)
T PF10647_consen  103 VEVDWPGLRG--RITALRVSPDGTRVAVVVEDG----------------GGGRVYVAGVVRDGDGVPRRLTGPRRVAPPL  164 (253)
T ss_pred             EEecccccCC--ceEEEEECCCCcEEEEEEecC----------------CCCeEEEEEEEeCCCCCcceeccceEecccc
Confidence            2222111110  46789999999 554 33221                12444432    1111      111222223


Q ss_pred             CCCcceEEEcCCCCEEEEEe
Q 026389          217 LFFANGVALSKDEDYLVVCE  236 (239)
Q Consensus       217 l~~pnGia~s~dg~~lyvad  236 (239)
                      +..+..+++.++++.++.+.
T Consensus       165 ~~~v~~v~W~~~~~L~V~~~  184 (253)
T PF10647_consen  165 LSDVTDVAWSDDSTLVVLGR  184 (253)
T ss_pred             cCcceeeeecCCCEEEEEeC
Confidence            45667899998887655544

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides

Probab=93.94  E-value=0.15  Score=35.84  Aligned_cols=48  Identities=10%  Similarity=-0.092  Sum_probs=36.1

Q ss_pred             eCCCeEEEEecCCcEEEeeeccCcCccCeEEcCCC-CEEEEeCCCCeEEEc
Q 026389           94 TRDGWIKRLHKNGTWENWKLIGGDTLLGITTTQEN-EILVCDADKGLLKVT  143 (239)
Q Consensus        94 ~~~g~I~~~~~~G~~~~~~~~~~~p~~Gl~~d~~G-~L~v~d~~~g~~~v~  143 (239)
                      ...+.|+.+++ ++.+..+.....|+ ||.+++++ .|||++...+.+.+.
T Consensus        33 ~~~~~Vvyyd~-~~~~~va~g~~~aN-GI~~s~~~k~lyVa~~~~~~I~vy   81 (86)
T PF01731_consen   33 LPWGNVVYYDG-KEVKVVASGFSFAN-GIAISPDKKYLYVASSLAHSIHVY   81 (86)
T ss_pred             CCCceEEEEeC-CEeEEeeccCCCCc-eEEEcCCCCEEEEEeccCCeEEEE
Confidence            34577888875 34566666678999 99999887 599999887666553

The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=93.79  E-value=1.6  Score=39.77  Aligned_cols=140  Identities=16%  Similarity=0.157  Sum_probs=81.0

Q ss_pred             cCCcce-EEEcCCCCEEEEe-CCCeEEEEec-CCcEEEeeeccCcCccCeEEcCCCCEEEEeCCCCeEEEcc--------
Q 026389           76 LNGPED-VCVDRNGVLYTAT-RDGWIKRLHK-NGTWENWKLIGGDTLLGITTTQENEILVCDADKGLLKVTE--------  144 (239)
Q Consensus        76 ~~gPe~-ia~d~~G~ly~~~-~~g~I~~~~~-~G~~~~~~~~~~~p~~Gl~~d~~G~L~v~d~~~g~~~v~~--------  144 (239)
                      +.||-. ++-+++|.+.++. ..|.||.|.- .|..-.+....-.+.+-|.|..||.++++.+..|.+.+..        
T Consensus        80 ~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~  159 (476)
T KOG0646|consen   80 LPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSAD  159 (476)
T ss_pred             cccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccc
Confidence            345543 5666789888777 8999999974 5653222122233433788888999999988877765531        


Q ss_pred             -CC-ceEEecccCCccccccccEEEcCCC---CEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecCCCCC
Q 026389          145 -EG-VTVLASHVNGSRINLADDLIAATDG---SIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFF  219 (239)
Q Consensus       145 -~g-~~~l~~~~~g~~~~~pn~l~vd~dG---~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~~l~~  219 (239)
                       ++ .+.+- .+.+.. ....|+.++..|   ++|-+..                  ...+-.||..++.+-.-+.--..
T Consensus       160 ~~~~~~p~~-~f~~Ht-lsITDl~ig~Gg~~~rl~TaS~------------------D~t~k~wdlS~g~LLlti~fp~s  219 (476)
T KOG0646|consen  160 NDHSVKPLH-IFSDHT-LSITDLQIGSGGTNARLYTASE------------------DRTIKLWDLSLGVLLLTITFPSS  219 (476)
T ss_pred             cCCCcccee-eeccCc-ceeEEEEecCCCccceEEEecC------------------CceEEEEEeccceeeEEEecCCc
Confidence             11 11111 111211 134566666654   3332221                  23455577766654332222345


Q ss_pred             cceEEEcCCCCEEEEE
Q 026389          220 ANGVALSKDEDYLVVC  235 (239)
Q Consensus       220 pnGia~s~dg~~lyva  235 (239)
                      ++.++++|-++.+|+-
T Consensus       220 i~av~lDpae~~~yiG  235 (476)
T KOG0646|consen  220 IKAVALDPAERVVYIG  235 (476)
T ss_pred             ceeEEEcccccEEEec
Confidence            6889999999998874

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=93.73  E-value=4.2  Score=35.23  Aligned_cols=96  Identities=19%  Similarity=0.278  Sum_probs=50.9

Q ss_pred             EEcCCCC-EEEEe-----CCCeEEEEecCCcEE---EeeeccCcCccCeEEcCCCCEEEE-eCC------CCeEEEccCC
Q 026389           83 CVDRNGV-LYTAT-----RDGWIKRLHKNGTWE---NWKLIGGDTLLGITTTQENEILVC-DAD------KGLLKVTEEG  146 (239)
Q Consensus        83 a~d~~G~-ly~~~-----~~g~I~~~~~~G~~~---~~~~~~~~p~~Gl~~d~~G~L~v~-d~~------~g~~~v~~~g  146 (239)
                      .+++||. ||.+-     ..|.|-.||.+....   .|...+-.|+ -+.+..||+++|. +.+      .|..+++-+.
T Consensus       120 vfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpH-ev~lm~DGrtlvvanGGIethpdfgR~~lNlds  198 (366)
T COG3490         120 VFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPH-EVTLMADGRTLVVANGGIETHPDFGRTELNLDS  198 (366)
T ss_pred             ccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcc-eeEEecCCcEEEEeCCceecccccCccccchhh
Confidence            4566775 44332     336666666543222   2233445688 8888899986654 331      1222222111


Q ss_pred             ---ceEEecccCC-----------ccccccccEEEcCCCCEEEEeCC
Q 026389          147 ---VTVLASHVNG-----------SRINLADDLIAATDGSIYFSVAS  179 (239)
Q Consensus       147 ---~~~l~~~~~g-----------~~~~~pn~l~vd~dG~iy~td~~  179 (239)
                         .-++.+...|           .......-+++++||+|||....
T Consensus       199 MePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy  245 (366)
T COG3490         199 MEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQY  245 (366)
T ss_pred             cCccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEEe
Confidence               1111111111           23345678999999999998654

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=93.67  E-value=0.61  Score=42.91  Aligned_cols=93  Identities=16%  Similarity=0.145  Sum_probs=57.9

Q ss_pred             EeCCCeEEEEecCCcE--EEeeeccCcCccCeEEcCCC-CEEEEeCCC-CeEEEc-cC-C-ceEEecccCCccccccccE
Q 026389           93 ATRDGWIKRLHKNGTW--ENWKLIGGDTLLGITTTQEN-EILVCDADK-GLLKVT-EE-G-VTVLASHVNGSRINLADDL  165 (239)
Q Consensus        93 ~~~~g~I~~~~~~G~~--~~~~~~~~~p~~Gl~~d~~G-~L~v~d~~~-g~~~v~-~~-g-~~~l~~~~~g~~~~~pn~l  165 (239)
                      .+.+|.|..||.+|..  ..|......|..|+.|.+.+ .|+|+-.+. .++.+| .. . ...|.   ...|+   ..+
T Consensus       183 asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~---y~~Pl---stv  256 (673)
T KOG4378|consen  183 ASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLT---YSHPL---STV  256 (673)
T ss_pred             eccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccceee---ecCCc---cee
Confidence            3466777777776642  23333344555599999877 466665443 444455 22 2 33332   12333   578


Q ss_pred             EEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCC
Q 026389          166 IAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLN  208 (239)
Q Consensus       166 ~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~  208 (239)
                      ++.++|.+.+...+                 .|+|+.||..+.
T Consensus       257 af~~~G~~L~aG~s-----------------~G~~i~YD~R~~  282 (673)
T KOG4378|consen  257 AFSECGTYLCAGNS-----------------KGELIAYDMRST  282 (673)
T ss_pred             eecCCceEEEeecC-----------------CceEEEEecccC
Confidence            99999988777665                 699999998754

>KOG1215 consensus Low-density lipoprotein receptors containing Ca2+-binding EGF-like domains [Signal transduction mechanisms]

Probab=93.67  E-value=1.3  Score=44.33  Aligned_cols=136  Identities=19%  Similarity=0.265  Sum_probs=91.7

Q ss_pred             eEEEcC-CCCEEEEe-CCCeEEEEecCCcEEE--eeeccCcCccCeEEcCC-CCEEEEeCCCCeEEEc-cCC--ceEEec
Q 026389           81 DVCVDR-NGVLYTAT-RDGWIKRLHKNGTWEN--WKLIGGDTLLGITTTQE-NEILVCDADKGLLKVT-EEG--VTVLAS  152 (239)
Q Consensus        81 ~ia~d~-~G~ly~~~-~~g~I~~~~~~G~~~~--~~~~~~~p~~Gl~~d~~-G~L~v~d~~~g~~~v~-~~g--~~~l~~  152 (239)
                      .+.++. ++.+|..+ .+.+|.+...++....  .......+- |+++|.- +++|.+|.....+.+. .+|  ..+++.
T Consensus       441 ~~d~d~~~~~i~~~d~~~~~i~~~~~~~~~~~~~~~~g~~~~~-~lavD~~~~~~y~tDe~~~~i~v~~~~g~~~~vl~~  519 (877)
T KOG1215|consen  441 ALDFDVLNNRIYWADLSDEKICRASQDGSSECELCGDGLCIPE-GLAVDWIGDNIYWTDEGNCLIEVADLDGSSRKVLVS  519 (877)
T ss_pred             EEEEEecCCEEEEEeccCCeEeeeccCCCccceEeccCccccC-cEEEEeccCCceecccCCceeEEEEccCCceeEEEe
Confidence            344442 55788666 7788888876665332  233445677 9999944 4899999988777776 466  344543


Q ss_pred             ccCCccccccccEEEcCC-CCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEec-CCCCCcceEEEcCCCC
Q 026389          153 HVNGSRINLADDLIAATD-GSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILL-DSLFFANGVALSKDED  230 (239)
Q Consensus       153 ~~~g~~~~~pn~l~vd~d-G~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~-~~l~~pnGia~s~dg~  230 (239)
                      ..    +..|..+++++. |.+|++|... .              . ++.|-..++...+.+. .++..|||++++-..+
T Consensus       520 ~~----l~~~r~~~v~p~~g~~~wtd~~~-~--------------~-~i~ra~~dg~~~~~l~~~~~~~p~glt~d~~~~  579 (877)
T KOG1215|consen  520 KD----LDLPRSIAVDPEKGLMFWTDWGQ-P--------------P-RIERASLDGSERAVLVTNGILWPNGLTIDYETD  579 (877)
T ss_pred             cC----CCCccceeeccccCeeEEecCCC-C--------------c-hhhhhcCCCCCceEEEeCCccCCCcceEEeecc
Confidence            21    134778999996 7999999762 1              1 4555555544444444 4478999999998888


Q ss_pred             EEEEEeC
Q 026389          231 YLVVCET  237 (239)
Q Consensus       231 ~lyvadt  237 (239)
                      .+|.+|.
T Consensus       580 ~~yw~d~  586 (877)
T KOG1215|consen  580 RLYWADA  586 (877)
T ss_pred             eeEEEcc
Confidence            8998875

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=93.60  E-value=0.61  Score=41.31  Aligned_cols=61  Identities=20%  Similarity=0.216  Sum_probs=47.1

Q ss_pred             ccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEec-CCCCCcceEEEcCCCCEEEEE
Q 026389          159 INLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILL-DSLFFANGVALSKDEDYLVVC  235 (239)
Q Consensus       159 ~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~-~~l~~pnGia~s~dg~~lyva  235 (239)
                      .+..+.+...+||.++++.+.                +...+..+|++++.-..+. .++..-.-+-+||||+.++.+
T Consensus       195 h~pVtsmqwn~dgt~l~tAS~----------------gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaA  256 (445)
T KOG2139|consen  195 HNPVTSMQWNEDGTILVTASF----------------GSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAA  256 (445)
T ss_pred             CceeeEEEEcCCCCEEeeccc----------------CcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEe
Confidence            456778889999999998764                2457889999988776665 555555668899999988765

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=93.56  E-value=2.8  Score=36.26  Aligned_cols=126  Identities=20%  Similarity=0.192  Sum_probs=70.3

Q ss_pred             cCCCCEEEEe--CCCeEEEEecCCcEEEeeeccCcCccCeEEcCCCC--EEEEeCCCCe--EEEccCC--ceEEecccCC
Q 026389           85 DRNGVLYTAT--RDGWIKRLHKNGTWENWKLIGGDTLLGITTTQENE--ILVCDADKGL--LKVTEEG--VTVLASHVNG  156 (239)
Q Consensus        85 d~~G~ly~~~--~~g~I~~~~~~G~~~~~~~~~~~p~~Gl~~d~~G~--L~v~d~~~g~--~~v~~~g--~~~l~~~~~g  156 (239)
                      +.||..++..  .+|+|..         -.....|-+ ||++++.-.  +.++-. -|.  +.+|.++  .-++....++
T Consensus        44 ~~dgs~g~a~~~eaGk~v~---------~~~lpaR~H-gi~~~p~~~ravafARr-PGtf~~vfD~~~~~~pv~~~s~~~  112 (366)
T COG3490          44 ARDGSFGAATLSEAGKIVF---------ATALPARGH-GIAFHPALPRAVAFARR-PGTFAMVFDPNGAQEPVTLVSQEG  112 (366)
T ss_pred             ccCCceeEEEEccCCceee---------eeecccccC-CeecCCCCcceEEEEec-CCceEEEECCCCCcCcEEEecccC
Confidence            3577777543  4454432         122345667 888876543  333332 233  3445555  2222222233


Q ss_pred             ccccccccEEEcCCC-CEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEe---cCCCCCcceEEEcCCCCEE
Q 026389          157 SRINLADDLIAATDG-SIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSIL---LDSLFFANGVALSKDEDYL  232 (239)
Q Consensus       157 ~~~~~pn~l~vd~dG-~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~---~~~l~~pnGia~s~dg~~l  232 (239)
                      . . |----++.+|| .+|.|+..  +           ..+.|-|=.||.+.+ ...+   -+---.|..|.+.+||+++
T Consensus       113 R-H-fyGHGvfs~dG~~LYATEnd--f-----------d~~rGViGvYd~r~~-fqrvgE~~t~GiGpHev~lm~DGrtl  176 (366)
T COG3490         113 R-H-FYGHGVFSPDGRLLYATEND--F-----------DPNRGVIGVYDAREG-FQRVGEFSTHGIGPHEVTLMADGRTL  176 (366)
T ss_pred             c-e-eecccccCCCCcEEEeecCC--C-----------CCCCceEEEEecccc-cceecccccCCcCcceeEEecCCcEE
Confidence            2 1 22234788999 57888765  2           123477778887633 3222   2334568999999999999


Q ss_pred             EEEeC
Q 026389          233 VVCET  237 (239)
Q Consensus       233 yvadt  237 (239)
                      .|++-
T Consensus       177 vvanG  181 (366)
T COG3490         177 VVANG  181 (366)
T ss_pred             EEeCC
Confidence            99875

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=93.22  E-value=5.5  Score=36.52  Aligned_cols=133  Identities=17%  Similarity=0.156  Sum_probs=76.3

Q ss_pred             cceEEEcC-CCCEE-EEeCCCeEEEEec--CCcEEEeeeccCcCccCeEEcCCCCEEEEeCCCCeEEEc-c-CCceEEec
Q 026389           79 PEDVCVDR-NGVLY-TATRDGWIKRLHK--NGTWENWKLIGGDTLLGITTTQENEILVCDADKGLLKVT-E-EGVTVLAS  152 (239)
Q Consensus        79 Pe~ia~d~-~G~ly-~~~~~g~I~~~~~--~G~~~~~~~~~~~p~~Gl~~d~~G~L~v~d~~~g~~~v~-~-~g~~~l~~  152 (239)
                      -.+.++.+ ++++. +|+-||+|..||.  .+.+ ...-..+.|.-.+.+-+.|.++++-.+ ..+++. - .|.+.+..
T Consensus       156 VR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~-v~elnhg~pVe~vl~lpsgs~iasAgG-n~vkVWDl~~G~qll~~  233 (487)
T KOG0310|consen  156 VRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSR-VVELNHGCPVESVLALPSGSLIASAGG-NSVKVWDLTTGGQLLTS  233 (487)
T ss_pred             eEeeccccCCCeEEEecCCCceEEEEEeccCCce-eEEecCCCceeeEEEcCCCCEEEEcCC-CeEEEEEecCCceehhh
Confidence            34456666 55565 6679999999985  2222 223334555525556688888877654 556654 3 35333322


Q ss_pred             ccCCccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecCCCCCcc---eEEEcCCC
Q 026389          153 HVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFAN---GVALSKDE  229 (239)
Q Consensus       153 ~~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~~l~~pn---Gia~s~dg  229 (239)
                      ....  ..-..-+.+..+++-.+|.+-                 .++|-.||..+-++   ..++.+|+   .|+++||+
T Consensus       234 ~~~H--~KtVTcL~l~s~~~rLlS~sL-----------------D~~VKVfd~t~~Kv---v~s~~~~~pvLsiavs~dd  291 (487)
T KOG0310|consen  234 MFNH--NKTVTCLRLASDSTRLLSGSL-----------------DRHVKVFDTTNYKV---VHSWKYPGPVLSIAVSPDD  291 (487)
T ss_pred             hhcc--cceEEEEEeecCCceEeeccc-----------------ccceEEEEccceEE---EEeeecccceeeEEecCCC
Confidence            1111  123456777777754444433                 46777788543332   23345554   47899999


Q ss_pred             CEEEEE
Q 026389          230 DYLVVC  235 (239)
Q Consensus       230 ~~lyva  235 (239)
                      +++++-
T Consensus       292 ~t~viG  297 (487)
T KOG0310|consen  292 QTVVIG  297 (487)
T ss_pred             ceEEEe
Confidence            988864

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=93.21  E-value=4.9  Score=34.41  Aligned_cols=98  Identities=15%  Similarity=0.197  Sum_probs=61.5

Q ss_pred             cCCcceEEEcCCCCEE-EEeCCCeEEEEec-CCcEEEeeec---cCcCccCeEEcCCCCEEEEeCCCCeEE---EccCC-
Q 026389           76 LNGPEDVCVDRNGVLY-TATRDGWIKRLHK-NGTWENWKLI---GGDTLLGITTTQENEILVCDADKGLLK---VTEEG-  146 (239)
Q Consensus        76 ~~gPe~ia~d~~G~ly-~~~~~g~I~~~~~-~G~~~~~~~~---~~~p~~Gl~~d~~G~L~v~d~~~g~~~---v~~~g-  146 (239)
                      -..-+++||.|.|++. +++.|..+..+.. +++++.....   ...-- .+++.++|+++.+=+...-+.   +++++ 
T Consensus        61 krsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK-~Vaws~sG~~LATCSRDKSVWiWe~deddE  139 (312)
T KOG0645|consen   61 KRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVK-CVAWSASGNYLATCSRDKSVWIWEIDEDDE  139 (312)
T ss_pred             hheeeeeeecCCCcEEEEeeccceEEEeecCCCceeEEeeeecccccee-EEEEcCCCCEEEEeeCCCeEEEEEecCCCc
Confidence            3566789999999855 5568888888765 5666544333   23455 789999998776544444333   34444 


Q ss_pred             ce---EEecccCCccccccccEEEcCCCCEEEEeCC
Q 026389          147 VT---VLASHVNGSRINLADDLIAATDGSIYFSVAS  179 (239)
Q Consensus       147 ~~---~l~~~~~g~~~~~pn~l~vd~dG~iy~td~~  179 (239)
                      .+   +|.....+     .-.+...|--.|.|+-+.
T Consensus       140 fec~aVL~~HtqD-----VK~V~WHPt~dlL~S~SY  170 (312)
T KOG0645|consen  140 FECIAVLQEHTQD-----VKHVIWHPTEDLLFSCSY  170 (312)
T ss_pred             EEEEeeecccccc-----ccEEEEcCCcceeEEecc
Confidence            33   33333222     345777887778888664

>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]

Probab=93.10  E-value=1  Score=42.22  Aligned_cols=95  Identities=15%  Similarity=0.167  Sum_probs=57.7

Q ss_pred             eEEEcCCCCEEEEeCCCeEEEEec-CCcEEEeeecc--CcCccCeEEcCCCCEEEEeCCCCeEEEccCCceEEecccCCc
Q 026389           81 DVCVDRNGVLYTATRDGWIKRLHK-NGTWENWKLIG--GDTLLGITTTQENEILVCDADKGLLKVTEEGVTVLASHVNGS  157 (239)
Q Consensus        81 ~ia~d~~G~ly~~~~~g~I~~~~~-~G~~~~~~~~~--~~p~~Gl~~d~~G~L~v~d~~~g~~~v~~~g~~~l~~~~~g~  157 (239)
                      -+.+|.+|++|+++.+| +++|+. .|+.-......  ...+ .+..|.+|+|||... .|++..++.|-+.. .....-
T Consensus       169 aLv~D~~g~lWvgT~dG-L~~fd~~~gkalql~s~~~dk~I~-al~~d~qg~LWVGTd-qGv~~~e~~G~~~s-n~~~~l  244 (671)
T COG3292         169 ALVFDANGRLWVGTPDG-LSYFDAGRGKALQLASPPLDKAIN-ALIADVQGRLWVGTD-QGVYLQEAEGWRAS-NWGPML  244 (671)
T ss_pred             eeeeeccCcEEEecCCc-ceEEccccceEEEcCCCcchhhHH-HHHHHhcCcEEEEec-cceEEEchhhcccc-ccCCCC
Confidence            36788889999988664 566664 34443222211  2345 677788999999875 67877775551111 011111


Q ss_pred             cccccccEEEcCCCCEEEEeCC
Q 026389          158 RINLADDLIAATDGSIYFSVAS  179 (239)
Q Consensus       158 ~~~~pn~l~vd~dG~iy~td~~  179 (239)
                      +....+-+.-|.+|.+||....
T Consensus       245 p~~~I~ll~qD~qG~lWiGTen  266 (671)
T COG3292         245 PSGNILLLVQDAQGELWIGTEN  266 (671)
T ss_pred             cchheeeeecccCCCEEEeecc
Confidence            2234556677888999998754

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=93.10  E-value=3.9  Score=36.18  Aligned_cols=116  Identities=17%  Similarity=0.200  Sum_probs=62.5

Q ss_pred             CCCEEEEeCCCeEEEEecCCcEEEeee-----------ccCcCccC---eEEc-CCCCEEEEeCCC----------CeEE
Q 026389           87 NGVLYTATRDGWIKRLHKNGTWENWKL-----------IGGDTLLG---ITTT-QENEILVCDADK----------GLLK  141 (239)
Q Consensus        87 ~G~ly~~~~~g~I~~~~~~G~~~~~~~-----------~~~~p~~G---l~~d-~~G~L~v~d~~~----------g~~~  141 (239)
                      ++++|+.+-+|+|+..+..|....+..           .+=+|- |   ++++ +.|+|||.-+..          -++.
T Consensus       195 ~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPG-G~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv  273 (342)
T PF06433_consen  195 GGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPG-GWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWV  273 (342)
T ss_dssp             TTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE--SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEE
T ss_pred             CCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCc-ceeeeeeccccCeEEEEecCCCCCCccCCceEEEE
Confidence            457888888999999886553222111           011232 3   6776 466899875321          1333


Q ss_pred             Ec-cCC--ceEEecccCCccccccccEEEcCCC--CEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecCC
Q 026389          142 VT-EEG--VTVLASHVNGSRINLADDLIAATDG--SIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDS  216 (239)
Q Consensus       142 v~-~~g--~~~l~~~~~g~~~~~pn~l~vd~dG--~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~~  216 (239)
                      +| ..+  +..+.  .+    ...+.|.|..|.  .||..+..                 ++.|+.||..+|+....++.
T Consensus       274 ~D~~t~krv~Ri~--l~----~~~~Si~Vsqd~~P~L~~~~~~-----------------~~~l~v~D~~tGk~~~~~~~  330 (342)
T PF06433_consen  274 YDLKTHKRVARIP--LE----HPIDSIAVSQDDKPLLYALSAG-----------------DGTLDVYDAATGKLVRSIEQ  330 (342)
T ss_dssp             EETTTTEEEEEEE--EE----EEESEEEEESSSS-EEEEEETT-----------------TTEEEEEETTT--EEEEE--
T ss_pred             EECCCCeEEEEEe--CC----CccceEEEccCCCcEEEEEcCC-----------------CCeEEEEeCcCCcEEeehhc
Confidence            44 233  11111  01    124578888876  46655543                 57899999999988777777


Q ss_pred             CCCcceEEEc
Q 026389          217 LFFANGVALS  226 (239)
Q Consensus       217 l~~pnGia~s  226 (239)
                      +....-|-++
T Consensus       331 lG~~~~l~~~  340 (342)
T PF06433_consen  331 LGETPTLILT  340 (342)
T ss_dssp             -SSS--EEEE
T ss_pred             cCCCceEEEe
Confidence            7665545443

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=92.48  E-value=4.4  Score=34.10  Aligned_cols=99  Identities=16%  Similarity=0.249  Sum_probs=59.3

Q ss_pred             CEEEEeCCCeEEEEec-CCcEEEeeeccCcCccCeEEcCCCCEEEEeCCCCeEEE-c-cCCceEEecccCCc-ccccccc
Q 026389           89 VLYTATRDGWIKRLHK-NGTWENWKLIGGDTLLGITTTQENEILVCDADKGLLKV-T-EEGVTVLASHVNGS-RINLADD  164 (239)
Q Consensus        89 ~ly~~~~~g~I~~~~~-~G~~~~~~~~~~~p~~Gl~~d~~G~L~v~d~~~g~~~v-~-~~g~~~l~~~~~g~-~~~~pn~  164 (239)
                      .|..++.||++..||. .|+..  .+..+.|...+.+.++|+-..+..-.+.+++ | ..| ++|. .+.|. ...+--+
T Consensus       157 eIvaGS~DGtvRtydiR~G~l~--sDy~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tG-klL~-sYkGhkn~eykld  232 (307)
T KOG0316|consen  157 EIVAGSVDGTVRTYDIRKGTLS--SDYFGHPITSVSFSKDGNCSLASSLDSTLRLLDKETG-KLLK-SYKGHKNMEYKLD  232 (307)
T ss_pred             EEEeeccCCcEEEEEeecceee--hhhcCCcceeEEecCCCCEEEEeeccceeeecccchh-HHHH-Hhcccccceeeee
Confidence            4567778888888874 55432  3445677657889999986666655666665 4 355 1111 12221 2233345


Q ss_pred             EEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCC
Q 026389          165 LIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLN  208 (239)
Q Consensus       165 l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~  208 (239)
                      ..+.......|+.+-                 .|.||.||.-..
T Consensus       233 c~l~qsdthV~sgSE-----------------DG~Vy~wdLvd~  259 (307)
T KOG0316|consen  233 CCLNQSDTHVFSGSE-----------------DGKVYFWDLVDE  259 (307)
T ss_pred             eeecccceeEEeccC-----------------CceEEEEEeccc
Confidence            666655555565443                 688999987544

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=92.38  E-value=7.7  Score=34.59  Aligned_cols=92  Identities=10%  Similarity=0.129  Sum_probs=56.3

Q ss_pred             ceEEEcCCCCEEEEe--CCCeEEEEecCCc-EEEee--eccCcCccCeEEcCCCCEEEEeCCCCeEEEc-cCC----ceE
Q 026389           80 EDVCVDRNGVLYTAT--RDGWIKRLHKNGT-WENWK--LIGGDTLLGITTTQENEILVCDADKGLLKVT-EEG----VTV  149 (239)
Q Consensus        80 e~ia~d~~G~ly~~~--~~g~I~~~~~~G~-~~~~~--~~~~~p~~Gl~~d~~G~L~v~d~~~g~~~v~-~~g----~~~  149 (239)
                      .++.|.+||..+++.  .+..|..||++.+ -..+.  ..++..  -+.+.+||..+.|..-.+.+++. .+.    .+.
T Consensus       199 tsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~s--lLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw  276 (445)
T KOG2139|consen  199 TSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFS--LLKWSPDGDVLFAATCDAVFRLWQENQSWTKERW  276 (445)
T ss_pred             eEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCcee--eEEEcCCCCEEEEecccceeeeehhcccceecce
Confidence            457788888877544  5677888887643 22222  122222  36788999877777777888876 433    122


Q ss_pred             EecccCCccccccccEEEcCCC-CEEEEeCC
Q 026389          150 LASHVNGSRINLADDLIAATDG-SIYFSVAS  179 (239)
Q Consensus       150 l~~~~~g~~~~~pn~l~vd~dG-~iy~td~~  179 (239)
                      ...  .|    +.-....+|+| .|.|+-+.
T Consensus       277 ~lg--sg----rvqtacWspcGsfLLf~~sg  301 (445)
T KOG2139|consen  277 ILG--SG----RVQTACWSPCGSFLLFACSG  301 (445)
T ss_pred             ecc--CC----ceeeeeecCCCCEEEEEEcC
Confidence            211  12    45677889999 56666544

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=92.26  E-value=2.2  Score=38.26  Aligned_cols=138  Identities=12%  Similarity=0.113  Sum_probs=69.6

Q ss_pred             ceEEEcCCCCEE-EEeCCCeEEEEe-cCCcEE-EeeeccCcCccCeEEcCCCCEEEEeCCCCeEEEc--cCC--ceEEec
Q 026389           80 EDVCVDRNGVLY-TATRDGWIKRLH-KNGTWE-NWKLIGGDTLLGITTTQENEILVCDADKGLLKVT--EEG--VTVLAS  152 (239)
Q Consensus        80 e~ia~d~~G~ly-~~~~~g~I~~~~-~~G~~~-~~~~~~~~p~~Gl~~d~~G~L~v~d~~~g~~~v~--~~g--~~~l~~  152 (239)
                      .-+++..+|... ++..||.+..|+ |+-+.. ......+.-. .|.|.+||++++.-... ..++.  .+|  ......
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~-DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~  225 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVK-DLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTP  225 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccc-cceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCC
Confidence            346666676555 555777777676 543321 1123345566 89999999888776554 33333  455  333322


Q ss_pred             ccCCccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCC--CC----eEEEecCCCCCcceEEEc
Q 026389          153 HVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPS--LN----ETSILLDSLFFANGVALS  226 (239)
Q Consensus       153 ~~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~--~~----~~~~~~~~l~~pnGia~s  226 (239)
                      ......+..++=...+....+|+.....               +.++|-.+|..  .+    +.+...........+++|
T Consensus       226 ~~k~~~~~~cRF~~d~~~~~l~laa~~~---------------~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS  290 (398)
T KOG0771|consen  226 FSKDEMFSSCRFSVDNAQETLRLAASQF---------------PGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVS  290 (398)
T ss_pred             cccchhhhhceecccCCCceEEEEEecC---------------CCCceeEEEeeeeccccccchhhhhhccCcceeEEEc
Confidence            1111122222222212112666665441               23334333321  11    233333345556778899


Q ss_pred             CCCCEEEE
Q 026389          227 KDEDYLVV  234 (239)
Q Consensus       227 ~dg~~lyv  234 (239)
                      .||+++-+
T Consensus       291 ~dGkf~Al  298 (398)
T KOG0771|consen  291 DDGKFLAL  298 (398)
T ss_pred             CCCcEEEE
Confidence            99987654

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=92.25  E-value=3.9  Score=39.64  Aligned_cols=130  Identities=17%  Similarity=0.226  Sum_probs=80.5

Q ss_pred             eEEEcCCCCEE-EEeCCCeEEEEecCCcEEEeeeccCc--CccCeEEcCCCCEEEEeCCCCeEEEc--cCC---ceEEec
Q 026389           81 DVCVDRNGVLY-TATRDGWIKRLHKNGTWENWKLIGGD--TLLGITTTQENEILVCDADKGLLKVT--EEG---VTVLAS  152 (239)
Q Consensus        81 ~ia~d~~G~ly-~~~~~g~I~~~~~~G~~~~~~~~~~~--p~~Gl~~d~~G~L~v~d~~~g~~~v~--~~g---~~~l~~  152 (239)
                      ++.++|||.+. ++.-|+++..|--| ...-+....|+  |.+.|-+.+|++|+|+-+...-+++.  .=|   .+.+++
T Consensus       513 ~v~~Spdgk~LaVsLLdnTVkVyflD-tlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAH  591 (888)
T KOG0306|consen  513 CVSVSPDGKLLAVSLLDNTVKVYFLD-TLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAH  591 (888)
T ss_pred             EEEEcCCCcEEEEEeccCeEEEEEec-ceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcc
Confidence            56778889877 45577766655433 22223333343  43356666899999987776677776  223   344432


Q ss_pred             ccCCccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCC-eEEEecCCCCCcceEEEcCCCCE
Q 026389          153 HVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLN-ETSILLDSLFFANGVALSKDEDY  231 (239)
Q Consensus       153 ~~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~-~~~~~~~~l~~pnGia~s~dg~~  231 (239)
                      . +     ....+.+-|+-.++||.+.                 .|.+-+||.+.- .+.++-.......-+|.+|+|++
T Consensus       592 d-D-----Svm~V~F~P~~~~FFt~gK-----------------D~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~  648 (888)
T KOG0306|consen  592 D-D-----SVMSVQFLPKTHLFFTCGK-----------------DGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSF  648 (888)
T ss_pred             c-C-----ceeEEEEcccceeEEEecC-----------------cceEEeechhhhhhheeeccchheeeeeEEcCCCCe
Confidence            1 1     2356777888888998765                 577888886532 23344444556677888888886


Q ss_pred             EEE
Q 026389          232 LVV  234 (239)
Q Consensus       232 lyv  234 (239)
                      ++-
T Consensus       649 vvs  651 (888)
T KOG0306|consen  649 VVS  651 (888)
T ss_pred             EEe
Confidence            643

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=92.21  E-value=1.2  Score=39.98  Aligned_cols=99  Identities=18%  Similarity=0.238  Sum_probs=64.3

Q ss_pred             cCcCccCeEEcCCCCEEEEeCCCCeEEEccCC-ce--------------EEec-ccCCccccccccEEEcCCCCEEEEeC
Q 026389          115 GGDTLLGITTTQENEILVCDADKGLLKVTEEG-VT--------------VLAS-HVNGSRINLADDLIAATDGSIYFSVA  178 (239)
Q Consensus       115 ~~~p~~Gl~~d~~G~L~v~d~~~g~~~v~~~g-~~--------------~l~~-~~~g~~~~~pn~l~vd~dG~iy~td~  178 (239)
                      ...-+ +++|+++|+|+.+-...|.+.+...+ +.              .++. ...+ -..-+.+++..+|++..++.+
T Consensus        65 ~~aVN-~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~-h~~diydL~Ws~d~~~l~s~s  142 (434)
T KOG1009|consen   65 TRAVN-VVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRG-HRDDIYDLAWSPDSNFLVSGS  142 (434)
T ss_pred             cceeE-EEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecc-cccchhhhhccCCCceeeeee
Confidence            34567 89999999999887777766554211 11              1111 1111 112367888888887666654


Q ss_pred             CCCcCcccccccceeecCCceEEEEeCCCCeEEEec-CCCCCcceEEEcCCCCEE
Q 026389          179 STKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILL-DSLFFANGVALSKDEDYL  232 (239)
Q Consensus       179 ~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~-~~l~~pnGia~s~dg~~l  232 (239)
                      -                 ...++.||...|++.... +.-.+++|+|++|-++++
T Consensus       143 ~-----------------dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv  180 (434)
T KOG1009|consen  143 V-----------------DNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYV  180 (434)
T ss_pred             c-----------------cceEEEEEeccceeEeeccccccccceeecchhhhhh
Confidence            3                 346777888778876665 456789999999987754

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=92.05  E-value=0.51  Score=41.22  Aligned_cols=146  Identities=15%  Similarity=0.229  Sum_probs=85.7

Q ss_pred             eEeccCCcCCcceEEEcCCCCEE-EEeCCCeEEEEec-CCcEEE---------eeeccCcCccCeEEcCCCCEEEEeCCC
Q 026389           69 TRLGEGILNGPEDVCVDRNGVLY-TATRDGWIKRLHK-NGTWEN---------WKLIGGDTLLGITTTQENEILVCDADK  137 (239)
Q Consensus        69 ~~l~~g~~~gPe~ia~d~~G~ly-~~~~~g~I~~~~~-~G~~~~---------~~~~~~~p~~Gl~~d~~G~L~v~d~~~  137 (239)
                      +.|.-|+-..+|+-.|+|||... +++.||.|-.|+- +|+.+.         |.-.....+ .+.|.+|..++.+.+..
T Consensus       206 r~IKFg~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVl-ci~FSRDsEMlAsGsqD  284 (508)
T KOG0275|consen  206 RSIKFGQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVL-CISFSRDSEMLASGSQD  284 (508)
T ss_pred             hheecccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceE-EEeecccHHHhhccCcC
Confidence            44566667789999999999766 5669999988884 565421         111122334 67777777777777767


Q ss_pred             CeEEEc--cCC--ceEEecccCCccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEE-eCCCCeE-E
Q 026389          138 GLLKVT--EEG--VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKY-DPSLNET-S  211 (239)
Q Consensus       138 g~~~v~--~~g--~~~l~~~~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~-d~~~~~~-~  211 (239)
                      |.+++.  ..|  .+.+-    ..--....-+.+..|+.-..+.+.                  ....|+ ..++|+. .
T Consensus       285 GkIKvWri~tG~ClRrFd----rAHtkGvt~l~FSrD~SqiLS~sf------------------D~tvRiHGlKSGK~LK  342 (508)
T KOG0275|consen  285 GKIKVWRIETGQCLRRFD----RAHTKGVTCLSFSRDNSQILSASF------------------DQTVRIHGLKSGKCLK  342 (508)
T ss_pred             CcEEEEEEecchHHHHhh----hhhccCeeEEEEccCcchhhcccc------------------cceEEEeccccchhHH
Confidence            777665  455  33221    111122455667777754444322                  112222 2333432 2


Q ss_pred             EecCCCCCcceEEEcCCCCEEEEEeC
Q 026389          212 ILLDSLFFANGVALSKDEDYLVVCET  237 (239)
Q Consensus       212 ~~~~~l~~pnGia~s~dg~~lyvadt  237 (239)
                      .+...-.+.|...|++||.++.-+.|
T Consensus       343 EfrGHsSyvn~a~ft~dG~~iisaSs  368 (508)
T KOG0275|consen  343 EFRGHSSYVNEATFTDDGHHIISASS  368 (508)
T ss_pred             HhcCccccccceEEcCCCCeEEEecC
Confidence            33344567888999999998776544

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=91.91  E-value=8  Score=33.74  Aligned_cols=97  Identities=10%  Similarity=0.119  Sum_probs=47.6

Q ss_pred             eEEEcCCCCEEEEeCCCeEEEEecCCc--EEEeeec-cCcCccCeEEcCCCCEEEEeCCCCeEEEcc--CCceEEecccC
Q 026389           81 DVCVDRNGVLYTATRDGWIKRLHKNGT--WENWKLI-GGDTLLGITTTQENEILVCDADKGLLKVTE--EGVTVLASHVN  155 (239)
Q Consensus        81 ~ia~d~~G~ly~~~~~g~I~~~~~~G~--~~~~~~~-~~~p~~Gl~~d~~G~L~v~d~~~g~~~v~~--~g~~~l~~~~~  155 (239)
                      ++...++|+++..+..|.+++-...|+  ++.+... ..+-. .|.|+++|+||+... .|.+++.+  +..+.......
T Consensus       149 ~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq-~~gf~~~~~lw~~~~-Gg~~~~s~~~~~~~~w~~~~~  226 (302)
T PF14870_consen  149 DITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQ-SMGFSPDGNLWMLAR-GGQIQFSDDPDDGETWSEPII  226 (302)
T ss_dssp             EEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EE-EEEE-TTS-EEEEET-TTEEEEEE-TTEEEEE---B-
T ss_pred             eEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceeh-hceecCCCCEEEEeC-CcEEEEccCCCCccccccccC
Confidence            344556777665556666665332342  5544443 33444 888999999999885 46666653  22333322111


Q ss_pred             Cc--cccccccEEEcCCCCEEEEeCC
Q 026389          156 GS--RINLADDLIAATDGSIYFSVAS  179 (239)
Q Consensus       156 g~--~~~~pn~l~vd~dG~iy~td~~  179 (239)
                      ..  .-...-+++..+++.+|++-.+
T Consensus       227 ~~~~~~~~~ld~a~~~~~~~wa~gg~  252 (302)
T PF14870_consen  227 PIKTNGYGILDLAYRPPNEIWAVGGS  252 (302)
T ss_dssp             TTSS--S-EEEEEESSSS-EEEEEST
T ss_pred             CcccCceeeEEEEecCCCCEEEEeCC
Confidence            11  0112457788888888887654

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=91.86  E-value=3.2  Score=37.28  Aligned_cols=62  Identities=10%  Similarity=0.048  Sum_probs=40.0

Q ss_pred             eEeccCCcCCcceEEEcCCCCEE-EEeCCCeEEEEec-CCcEE-EeeeccCcCccCeEEcCCCCEE
Q 026389           69 TRLGEGILNGPEDVCVDRNGVLY-TATRDGWIKRLHK-NGTWE-NWKLIGGDTLLGITTTQENEIL  131 (239)
Q Consensus        69 ~~l~~g~~~gPe~ia~d~~G~ly-~~~~~g~I~~~~~-~G~~~-~~~~~~~~p~~Gl~~d~~G~L~  131 (239)
                      .++..+--..+-+++|.++++.. +++-++.++.||. .|+.. ...+....+. |+++|+-+.-+
T Consensus       116 ~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvq-gvawDpl~qyv  180 (434)
T KOG1009|consen  116 KKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQ-GVAWDPLNQYV  180 (434)
T ss_pred             EEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeeccccccccc-eeecchhhhhh
Confidence            33333334567788999988655 5667888888875 45543 3344566788 88888765433

>PF06739 SBBP: Beta-propeller repeat; InterPro: IPR010620 This family is related to IPR001680 from INTERPRO and is likely to also form a beta-propeller

Probab=91.68  E-value=0.16  Score=29.91  Aligned_cols=20  Identities=15%  Similarity=0.458  Sum_probs=17.4

Q ss_pred             cccccEEEcCCCCEEEEeCC
Q 026389          160 NLADDLIAATDGSIYFSVAS  179 (239)
Q Consensus       160 ~~pn~l~vd~dG~iy~td~~  179 (239)
                      ..+++|++|++|++|++-.+
T Consensus        13 ~~~~~IavD~~GNiYv~G~T   32 (38)
T PF06739_consen   13 DYGNGIAVDSNGNIYVTGYT   32 (38)
T ss_pred             eeEEEEEECCCCCEEEEEee
Confidence            36899999999999998755

SBBP stands for Seven Bladed Beta Propeller.

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=91.26  E-value=3.4  Score=37.03  Aligned_cols=136  Identities=15%  Similarity=0.204  Sum_probs=69.8

Q ss_pred             CcceEEEcCCCCEEEEe--CCCeEEEEecCCc-EEEeeec--cCcCccCeEEcCCC---CEEEEeCC--CCeEEE-c---
Q 026389           78 GPEDVCVDRNGVLYTAT--RDGWIKRLHKNGT-WENWKLI--GGDTLLGITTTQEN---EILVCDAD--KGLLKV-T---  143 (239)
Q Consensus        78 gPe~ia~d~~G~ly~~~--~~g~I~~~~~~G~-~~~~~~~--~~~p~~Gl~~d~~G---~L~v~d~~--~g~~~v-~---  143 (239)
                      .=+++.|.+||.+.++.  ...+||..+ +|. +....+.  .-.-- -++|..++   .|+++...  .+.+.. +   
T Consensus       188 eV~DL~FS~dgk~lasig~d~~~VW~~~-~g~~~a~~t~~~k~~~~~-~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~  265 (398)
T KOG0771|consen  188 EVKDLDFSPDGKFLASIGADSARVWSVN-TGAALARKTPFSKDEMFS-SCRFSVDNAQETLRLAASQFPGGGVRLCDISL  265 (398)
T ss_pred             ccccceeCCCCcEEEEecCCceEEEEec-cCchhhhcCCcccchhhh-hceecccCCCceEEEEEecCCCCceeEEEeee
Confidence            34578999999776554  334555543 342 1111100  00111 34554444   56666532  222222 1   


Q ss_pred             cCCceEEecccCCccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEec--CCCCCcc
Q 026389          144 EEGVTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILL--DSLFFAN  221 (239)
Q Consensus       144 ~~g~~~l~~~~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~--~~l~~pn  221 (239)
                      ..+-..+...-.-..++....++|+.||++..-...                 .|.|..|+..+-+...+.  ..+.+..
T Consensus       266 w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~-----------------dGsVai~~~~~lq~~~~vk~aH~~~VT  328 (398)
T KOG0771|consen  266 WSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTM-----------------DGSVAIYDAKSLQRLQYVKEAHLGFVT  328 (398)
T ss_pred             eccccccchhhhhhccCcceeEEEcCCCcEEEEecc-----------------CCcEEEEEeceeeeeEeehhhheeeee
Confidence            122011110001123456789999999986543322                 478888887544443333  2345789


Q ss_pred             eEEEcCCCCEE
Q 026389          222 GVALSKDEDYL  232 (239)
Q Consensus       222 Gia~s~dg~~l  232 (239)
                      +++|+||.+++
T Consensus       329 ~ltF~Pdsr~~  339 (398)
T KOG0771|consen  329 GLTFSPDSRYL  339 (398)
T ss_pred             eEEEcCCcCcc
Confidence            99999998754

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=91.17  E-value=9  Score=37.84  Aligned_cols=58  Identities=21%  Similarity=0.333  Sum_probs=36.8

Q ss_pred             CCCEEEEeCCCeEEEEec-CCcEEEeeeccCc----------CccCeEEc-----------------CCCCEEEEeCCCC
Q 026389           87 NGVLYTATRDGWIKRLHK-NGTWENWKLIGGD----------TLLGITTT-----------------QENEILVCDADKG  138 (239)
Q Consensus        87 ~G~ly~~~~~g~I~~~~~-~G~~~~~~~~~~~----------p~~Gl~~d-----------------~~G~L~v~d~~~g  138 (239)
                      +|.||+++.+++|+.+|. +|+. .|......          -. |++.-                 .++++|+......
T Consensus       194 gg~lYv~t~~~~V~ALDa~TGk~-lW~~d~~~~~~~~~~~~~cR-Gvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~  271 (764)
T TIGR03074       194 GDTLYLCTPHNKVIALDAATGKE-KWKFDPKLKTEAGRQHQTCR-GVSYYDAPAAAAGPAAPAAPADCARRIILPTSDAR  271 (764)
T ss_pred             CCEEEEECCCCeEEEEECCCCcE-EEEEcCCCCccccccccccc-ceEEecCCcccccccccccccccCCEEEEecCCCe
Confidence            789999999999999996 4653 23211111          01 33221                 2347888877777


Q ss_pred             eEEEc-cCC
Q 026389          139 LLKVT-EEG  146 (239)
Q Consensus       139 ~~~v~-~~g  146 (239)
                      ++.+| .+|
T Consensus       272 LiALDA~TG  280 (764)
T TIGR03074       272 LIALDADTG  280 (764)
T ss_pred             EEEEECCCC
Confidence            88888 567

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=90.97  E-value=4.2  Score=37.11  Aligned_cols=106  Identities=19%  Similarity=0.215  Sum_probs=62.3

Q ss_pred             CCCEEEEeCCCeEEEEecC-CcEEEeeeccCcCccCeEEcCCCC-EEEEeCCCCeEEEc---cCC-ce---EEecc----
Q 026389           87 NGVLYTATRDGWIKRLHKN-GTWENWKLIGGDTLLGITTTQENE-ILVCDADKGLLKVT---EEG-VT---VLASH----  153 (239)
Q Consensus        87 ~G~ly~~~~~g~I~~~~~~-G~~~~~~~~~~~p~~Gl~~d~~G~-L~v~d~~~g~~~v~---~~g-~~---~l~~~----  153 (239)
                      +.+||+++.|..+..||-. |..-.-......+. .+++|+.++ +|+..+...++...   ..| ..   +-...    
T Consensus       188 ~~rl~TaS~D~t~k~wdlS~g~LLlti~fp~si~-av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t  266 (476)
T KOG0646|consen  188 NARLYTASEDRTIKLWDLSLGVLLLTITFPSSIK-AVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENT  266 (476)
T ss_pred             cceEEEecCCceEEEEEeccceeeEEEecCCcce-eEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccc
Confidence            5689999989888888853 44322223344566 899999884 67666544333332   122 11   00000    


Q ss_pred             ----cCCc-cccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeE
Q 026389          154 ----VNGS-RINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNET  210 (239)
Q Consensus       154 ----~~g~-~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~  210 (239)
                          +.|. .-....=+++.-||++.++...                 .|.|..||..+++.
T Consensus       267 ~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~-----------------dg~VcvWdi~S~Q~  311 (476)
T KOG0646|consen  267 QINVLVGHENESAITCLAISTDGTLLLSGDE-----------------DGKVCVWDIYSKQC  311 (476)
T ss_pred             eeeeeccccCCcceeEEEEecCccEEEeeCC-----------------CCCEEEEecchHHH
Confidence                1111 1123456888899988887554                 58888888876653

>PRK13616 lipoprotein LpqB; Provisional

Probab=90.90  E-value=14  Score=35.47  Aligned_cols=138  Identities=13%  Similarity=0.120  Sum_probs=69.2

Q ss_pred             EEEcCC-CCEEEEeCCCeEEEEec---CCcEEEee--------eccCcCccCeEEcCCCC-EEEEeCCCCeEEE---c--
Q 026389           82 VCVDRN-GVLYTATRDGWIKRLHK---NGTWENWK--------LIGGDTLLGITTTQENE-ILVCDADKGLLKV---T--  143 (239)
Q Consensus        82 ia~d~~-G~ly~~~~~g~I~~~~~---~G~~~~~~--------~~~~~p~~Gl~~d~~G~-L~v~d~~~g~~~v---~--  143 (239)
                      ..|+++ +.||+.....++.++..   .+++....        ...+... .+++.+||. +.+.-.  +.+.+   -  
T Consensus       402 PsWspDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~~~~g~Is-sl~wSpDG~RiA~i~~--g~v~Va~Vvr~  478 (591)
T PRK13616        402 PSWSLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVASRVPGPIS-ELQLSRDGVRAAMIIG--GKVYLAVVEQT  478 (591)
T ss_pred             ceECCCCCceEEEecCcceEEEeccCCCceEEEEeccCchhhhccCCCcC-eEEECCCCCEEEEEEC--CEEEEEEEEeC
Confidence            388888 46776653334444331   12221110        1133455 789999994 443332  33433   2  


Q ss_pred             cCCceEEeccc-CCcccc-ccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecCCCCCcc
Q 026389          144 EEGVTVLASHV-NGSRIN-LADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFAN  221 (239)
Q Consensus       144 ~~g~~~l~~~~-~g~~~~-~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~~l~~pn  221 (239)
                      .+|...+.... -...+. .+.+++...++.|++....                +.-.++++..++...+.+..+-..+.
T Consensus       479 ~~G~~~l~~~~~l~~~l~~~~~~l~W~~~~~L~V~~~~----------------~~~~v~~v~vDG~~~~~~~~~n~~~~  542 (591)
T PRK13616        479 EDGQYALTNPREVGPGLGDTAVSLDWRTGDSLVVGRSD----------------PEHPVWYVNLDGSNSDALPSRNLSAP  542 (591)
T ss_pred             CCCceeecccEEeecccCCccccceEecCCEEEEEecC----------------CCCceEEEecCCccccccCCCCccCc
Confidence            34532221100 001111 2466778888888766432                23468888888554443232212344


Q ss_pred             eEEEcCCCCEEEEEeCC
Q 026389          222 GVALSKDEDYLVVCETF  238 (239)
Q Consensus       222 Gia~s~dg~~lyvadt~  238 (239)
                      .++++...+.+|++++.
T Consensus       543 v~~vaa~~~~iyv~~~~  559 (591)
T PRK13616        543 VVAVAASPSTVYVTDAR  559 (591)
T ss_pred             eEEEecCCceEEEEcCC
Confidence            45565555679988753

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=90.72  E-value=6.8  Score=38.90  Aligned_cols=67  Identities=12%  Similarity=0.147  Sum_probs=50.3

Q ss_pred             cCCcceEEEcCCCCEEEEe-CCCeEEEEecCC--cEEEeeeccCcCccCeEEcCCCCEEEEeCCCCeEEEc
Q 026389           76 LNGPEDVCVDRNGVLYTAT-RDGWIKRLHKNG--TWENWKLIGGDTLLGITTTQENEILVCDADKGLLKVT  143 (239)
Q Consensus        76 ~~gPe~ia~d~~G~ly~~~-~~g~I~~~~~~G--~~~~~~~~~~~p~~Gl~~d~~G~L~v~d~~~g~~~v~  143 (239)
                      ...-.++.++|...+..+. .|+.|..||-+-  .+++|.....|-. -++..|..+||.+.+..|.+.+.
T Consensus       250 ~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrrendRFW-~laahP~lNLfAAgHDsGm~VFk  319 (1202)
T KOG0292|consen  250 YNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRRENDRFW-ILAAHPELNLFAAGHDSGMIVFK  319 (1202)
T ss_pred             cCCcceEEecCccceeEecCCCccEEEEecccccceeeeeccCCeEE-EEEecCCcceeeeecCCceEEEE
Confidence            3445678899877777555 888888888654  3567766677777 78888999999999887776553

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=90.68  E-value=11  Score=32.95  Aligned_cols=136  Identities=21%  Similarity=0.206  Sum_probs=62.1

Q ss_pred             CCcceEEEcCCCCEEEEeCCCeEEEEecCCc-EEEeeeccC-----cCccCeEEcCCCCEEEEeCCCCeEEEc-cCCc--
Q 026389           77 NGPEDVCVDRNGVLYTATRDGWIKRLHKNGT-WENWKLIGG-----DTLLGITTTQENEILVCDADKGLLKVT-EEGV--  147 (239)
Q Consensus        77 ~gPe~ia~d~~G~ly~~~~~g~I~~~~~~G~-~~~~~~~~~-----~p~~Gl~~d~~G~L~v~d~~~g~~~v~-~~g~--  147 (239)
                      ....+|+|..+.+-|+....+.|++=+..|+ ++.......     +-. .+.++. .+.|++.. .+++... +.|.  
T Consensus        17 ~~l~dV~F~d~~~G~~VG~~g~il~T~DGG~tW~~~~~~~~~~~~~~l~-~I~f~~-~~g~ivG~-~g~ll~T~DgG~tW   93 (302)
T PF14870_consen   17 KPLLDVAFVDPNHGWAVGAYGTILKTTDGGKTWQPVSLDLDNPFDYHLN-SISFDG-NEGWIVGE-PGLLLHTTDGGKTW   93 (302)
T ss_dssp             S-EEEEEESSSS-EEEEETTTEEEEESSTTSS-EE-----S-----EEE-EEEEET-TEEEEEEE-TTEEEEESSTTSS-
T ss_pred             CceEEEEEecCCEEEEEecCCEEEEECCCCccccccccCCCccceeeEE-EEEecC-CceEEEcC-CceEEEecCCCCCc
Confidence            4667788887677776666788887654443 544322211     223 566643 45666644 3555555 4442  


Q ss_pred             eEE--ecccCCccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEec-CCCCCcceEE
Q 026389          148 TVL--ASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILL-DSLFFANGVA  224 (239)
Q Consensus       148 ~~l--~~~~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~-~~l~~pnGia  224 (239)
                      +.+  ....++.    +..+....++.+++...                  .|.||+=.-.+..-+.+. +....-+++.
T Consensus        94 ~~v~l~~~lpgs----~~~i~~l~~~~~~l~~~------------------~G~iy~T~DgG~tW~~~~~~~~gs~~~~~  151 (302)
T PF14870_consen   94 ERVPLSSKLPGS----PFGITALGDGSAELAGD------------------RGAIYRTTDGGKTWQAVVSETSGSINDIT  151 (302)
T ss_dssp             EE----TT-SS-----EEEEEEEETTEEEEEET------------------T--EEEESSTTSSEEEEE-S----EEEEE
T ss_pred             EEeecCCCCCCC----eeEEEEcCCCcEEEEcC------------------CCcEEEeCCCCCCeeEcccCCcceeEeEE
Confidence            222  1223332    33445444555554432                  266776554333434333 2234445666


Q ss_pred             EcCCCCEEEEEeC
Q 026389          225 LSKDEDYLVVCET  237 (239)
Q Consensus       225 ~s~dg~~lyvadt  237 (239)
                      .++||++|.|+..
T Consensus       152 r~~dG~~vavs~~  164 (302)
T PF14870_consen  152 RSSDGRYVAVSSR  164 (302)
T ss_dssp             E-TTS-EEEEETT
T ss_pred             ECCCCcEEEEECc
Confidence            6777777666543

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=90.65  E-value=12  Score=33.58  Aligned_cols=101  Identities=16%  Similarity=0.187  Sum_probs=63.6

Q ss_pred             cCCcceEEEcCCCCEEEEeCCCeEEEEec-CCcEEEeeeccCcCccCeEEcCCCCEEEEeCCCCeEEEc-c-CC-ceEEe
Q 026389           76 LNGPEDVCVDRNGVLYTATRDGWIKRLHK-NGTWENWKLIGGDTLLGITTTQENEILVCDADKGLLKVT-E-EG-VTVLA  151 (239)
Q Consensus        76 ~~gPe~ia~d~~G~ly~~~~~g~I~~~~~-~G~~~~~~~~~~~p~~Gl~~d~~G~L~v~d~~~g~~~v~-~-~g-~~~l~  151 (239)
                      ...-+.|.|++.+.+|.++.|+.|.+||. .|+... ...++.+++.+...+.-+|++|......+++. + .+ -.++.
T Consensus       260 t~~Vs~V~w~d~~v~yS~SwDHTIk~WDletg~~~~-~~~~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~  338 (423)
T KOG0313|consen  260 TEPVSSVVWSDATVIYSVSWDHTIKVWDLETGGLKS-TLTTNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVS  338 (423)
T ss_pred             ccceeeEEEcCCCceEeecccceEEEEEeeccccee-eeecCcceeEeecccccceeeecCCCCceeecCCCCCCCceeE
Confidence            33456789998999999999999999995 343222 12334554366666777899998777777775 3 33 33332


Q ss_pred             cccCCccccccccEEEcCCC-CEEEEeC
Q 026389          152 SHVNGSRINLADDLIAATDG-SIYFSVA  178 (239)
Q Consensus       152 ~~~~g~~~~~pn~l~vd~dG-~iy~td~  178 (239)
                      ..+-|.. ++...+...|.. ..+++.+
T Consensus       339 ~s~~gH~-nwVssvkwsp~~~~~~~S~S  365 (423)
T KOG0313|consen  339 QSLIGHK-NWVSSVKWSPTNEFQLVSGS  365 (423)
T ss_pred             Eeeecch-hhhhheecCCCCceEEEEEe
Confidence            2333322 356677777765 4555544

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=90.36  E-value=8.5  Score=37.66  Aligned_cols=94  Identities=16%  Similarity=0.218  Sum_probs=55.5

Q ss_pred             ceEEEcCCCCEE-EEeCCCeEEEEecCC------cEEEeeeccCcCccCeEEcCCCCEEEEeCCCCeEEEc--cCCceEE
Q 026389           80 EDVCVDRNGVLY-TATRDGWIKRLHKNG------TWENWKLIGGDTLLGITTTQENEILVCDADKGLLKVT--EEGVTVL  150 (239)
Q Consensus        80 e~ia~d~~G~ly-~~~~~g~I~~~~~~G------~~~~~~~~~~~p~~Gl~~d~~G~L~v~d~~~g~~~v~--~~g~~~l  150 (239)
                      ...++.++++.. +++.+|||+.|..-|      +.+.+--....-+ +++|..+|..+.+....+.+.+.  ..+.+.+
T Consensus       209 t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~-~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~kqf  287 (792)
T KOG1963|consen  209 TCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVN-SLSFSSDGAYLLSGGREGVLVLWQLETGKKQF  287 (792)
T ss_pred             eeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccc-eeEEecCCceEeecccceEEEEEeecCCCccc
Confidence            346777888766 556889998887433      1122222223455 89999999544443335666555  3333333


Q ss_pred             ecccCCccccccccEEEcCCCCEEEEeC
Q 026389          151 ASHVNGSRINLADDLIAATDGSIYFSVA  178 (239)
Q Consensus       151 ~~~~~g~~~~~pn~l~vd~dG~iy~td~  178 (239)
                      .....+ +   .-++.+.+|+..|..-.
T Consensus       288 LPRLgs-~---I~~i~vS~ds~~~sl~~  311 (792)
T KOG1963|consen  288 LPRLGS-P---ILHIVVSPDSDLYSLVL  311 (792)
T ss_pred             ccccCC-e---eEEEEEcCCCCeEEEEe
Confidence            333222 2   35799999998886543

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=90.03  E-value=13  Score=32.94  Aligned_cols=152  Identities=14%  Similarity=0.144  Sum_probs=74.6

Q ss_pred             cCCcceEEEcC--CCCEEEEeCCCeEEEEe--cCCcEEEee----eccCcCcc--CeEEcCCCCEEEEeCCCCeEEEccC
Q 026389           76 LNGPEDVCVDR--NGVLYTATRDGWIKRLH--KNGTWENWK----LIGGDTLL--GITTTQENEILVCDADKGLLKVTEE  145 (239)
Q Consensus        76 ~~gPe~ia~d~--~G~ly~~~~~g~I~~~~--~~G~~~~~~----~~~~~p~~--Gl~~d~~G~L~v~d~~~g~~~v~~~  145 (239)
                      +.-|.+.-+-|  +.+++.-+.||++..+.  .+|+...-.    .....|+.  .......+++|.......++.++-.
T Consensus       134 i~~PGC~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dls  213 (342)
T PF06433_consen  134 IDTPGCWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLS  213 (342)
T ss_dssp             EEGTSEEEEEEEETTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEET
T ss_pred             ecCCCEEEEEecCCCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEecc
Confidence            44555544444  45677778999987765  567643211    11122220  1112234466665544444555533


Q ss_pred             C--ceEEec-----c---cCCccccccccEEEcCC-CCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEec
Q 026389          146 G--VTVLAS-----H---VNGSRINLADDLIAATD-GSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILL  214 (239)
Q Consensus       146 g--~~~l~~-----~---~~g~~~~~pn~l~vd~d-G~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~  214 (239)
                      |  .+....     .   .++=+-..-.-+++++. |++|+--.....+.++        .+.-.||.||.++++...-+
T Consensus       214 g~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHK--------dpgteVWv~D~~t~krv~Ri  285 (342)
T PF06433_consen  214 GDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHK--------DPGTEVWVYDLKTHKRVARI  285 (342)
T ss_dssp             TSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TT--------S-EEEEEEEETTTTEEEEEE
T ss_pred             CCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCcc--------CCceEEEEEECCCCeEEEEE
Confidence            3  322211     0   11111123345788764 7899864322222221        13347899999988754433


Q ss_pred             CCCCCcceEEEcCCCC-EEEEE
Q 026389          215 DSLFFANGVALSKDED-YLVVC  235 (239)
Q Consensus       215 ~~l~~pnGia~s~dg~-~lyva  235 (239)
                      .--...++|+++.|.+ .||..
T Consensus       286 ~l~~~~~Si~Vsqd~~P~L~~~  307 (342)
T PF06433_consen  286 PLEHPIDSIAVSQDDKPLLYAL  307 (342)
T ss_dssp             EEEEEESEEEEESSSS-EEEEE
T ss_pred             eCCCccceEEEccCCCcEEEEE
Confidence            3223356889988877 45543

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=89.26  E-value=7.2  Score=35.74  Aligned_cols=57  Identities=16%  Similarity=0.140  Sum_probs=37.7

Q ss_pred             cEEEcCCC-CEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecCCCCCcceEEEcCCCCEEEEE
Q 026389          164 DLIAATDG-SIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVC  235 (239)
Q Consensus       164 ~l~vd~dG-~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~~l~~pnGia~s~dg~~lyva  235 (239)
                      .-.+.||| +|.|+...               .++-.||.+|.+++++..+......-..=.++|||++++++
T Consensus       242 ~P~fspDG~~l~f~~~r---------------dg~~~iy~~dl~~~~~~~Lt~~~gi~~~Ps~spdG~~ivf~  299 (425)
T COG0823         242 APAFSPDGSKLAFSSSR---------------DGSPDIYLMDLDGKNLPRLTNGFGINTSPSWSPDGSKIVFT  299 (425)
T ss_pred             CccCCCCCCEEEEEECC---------------CCCccEEEEcCCCCcceecccCCccccCccCCCCCCEEEEE
Confidence            34566777 45565443               23567999999988866654444333455689999988765

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=89.25  E-value=4  Score=36.33  Aligned_cols=37  Identities=14%  Similarity=0.225  Sum_probs=24.6

Q ss_pred             CceEEEEeCCCCeE-EEecCCCCCcceEEEcCCCCEEEEE
Q 026389          197 HGKLLKYDPSLNET-SILLDSLFFANGVALSKDEDYLVVC  235 (239)
Q Consensus       197 ~g~v~~~d~~~~~~-~~~~~~l~~pnGia~s~dg~~lyva  235 (239)
                      .+.++.||...+.. +.+.-+ -.+|+|+|+| +-+.|++
T Consensus       209 DrsIvLyD~R~~~Pl~KVi~~-mRTN~IswnP-eafnF~~  246 (433)
T KOG0268|consen  209 DRSIVLYDLRQASPLKKVILT-MRTNTICWNP-EAFNFVA  246 (433)
T ss_pred             CCceEEEecccCCccceeeee-ccccceecCc-cccceee
Confidence            57889999876543 233322 4689999999 4555554

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=89.23  E-value=13  Score=33.06  Aligned_cols=83  Identities=14%  Similarity=0.166  Sum_probs=52.4

Q ss_pred             CCCeEEEEecCC-c-EEEeeeccCcCccCeEEcCCCCEEEEeCCCCe-EEEc--cCCceEEecccCCccccccccEEEcC
Q 026389           95 RDGWIKRLHKNG-T-WENWKLIGGDTLLGITTTQENEILVCDADKGL-LKVT--EEGVTVLASHVNGSRINLADDLIAAT  169 (239)
Q Consensus        95 ~~g~I~~~~~~G-~-~~~~~~~~~~p~~Gl~~d~~G~L~v~d~~~g~-~~v~--~~g~~~l~~~~~g~~~~~pn~l~vd~  169 (239)
                      ..|.|+.||... + +..+....+.-. .|+|+++|.++.+.+.+|. ++|.  ++|.+ +.+.-.|........+++++
T Consensus       151 t~GdV~l~d~~nl~~v~~I~aH~~~lA-alafs~~G~llATASeKGTVIRVf~v~~G~k-l~eFRRG~~~~~IySL~Fs~  228 (391)
T KOG2110|consen  151 TSGDVVLFDTINLQPVNTINAHKGPLA-ALAFSPDGTLLATASEKGTVIRVFSVPEGQK-LYEFRRGTYPVSIYSLSFSP  228 (391)
T ss_pred             CCceEEEEEcccceeeeEEEecCCcee-EEEECCCCCEEEEeccCceEEEEEEcCCccE-eeeeeCCceeeEEEEEEECC
Confidence            568999998643 2 223333334444 7999999999998877764 5665  67711 11112344345577899999


Q ss_pred             CCCEEEEeCC
Q 026389          170 DGSIYFSVAS  179 (239)
Q Consensus       170 dG~iy~td~~  179 (239)
                      |+.+..+.++
T Consensus       229 ds~~L~~sS~  238 (391)
T KOG2110|consen  229 DSQFLAASSN  238 (391)
T ss_pred             CCCeEEEecC
Confidence            9986555444

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=89.22  E-value=1.8  Score=37.95  Aligned_cols=158  Identities=15%  Similarity=0.138  Sum_probs=82.6

Q ss_pred             CCCCCCCcccchhhhhHHH-----HHHHHHHHHHhhccCCCccccccCCCCCCC-CCCCCCcccccceEeccCCcCCcce
Q 026389            8 PPTTGSSSKRCVPVCSGIV-----LSCLLAFTLQIFFFSPISPDLLLLPPASSA-SLIPTTSDIQSVTRLGEGILNGPED   81 (239)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~p~~~~~p~~~~~-g~~~~n~~l~~~~~l~~g~~~gPe~   81 (239)
                      +=++.+|-|.|-.+-.+.-     ..++.     .+..+|.++....+---... |.+....+ .....++ |.-.|-..
T Consensus       183 vFdt~RpGr~c~vy~t~~~~k~gq~giis-----c~a~sP~~~~~~a~gsY~q~~giy~~~~~-~pl~llg-gh~gGvTh  255 (406)
T KOG2919|consen  183 VFDTSRPGRDCPVYTTVTKGKFGQKGIIS-----CFAFSPMDSKTLAVGSYGQRVGIYNDDGR-RPLQLLG-GHGGGVTH  255 (406)
T ss_pred             EeeccCCCCCCcchhhhhcccccccceee-----eeeccCCCCcceeeecccceeeeEecCCC-Cceeeec-ccCCCeee
Confidence            3457788888877655333     22222     24446666644333222222 44443321 1223333 44567778


Q ss_pred             EEEcCCC-CEEEEe-CCCeEEEEecCCcEE-Ee-----ee-ccCcCccCeEEcCCCCEEEEeCCCCeEEEc-cC--CceE
Q 026389           82 VCVDRNG-VLYTAT-RDGWIKRLHKNGTWE-NW-----KL-IGGDTLLGITTTQENEILVCDADKGLLKVT-EE--GVTV  149 (239)
Q Consensus        82 ia~d~~G-~ly~~~-~~g~I~~~~~~G~~~-~~-----~~-~~~~p~~Gl~~d~~G~L~v~d~~~g~~~v~-~~--g~~~  149 (239)
                      +.|.++| ++|++. .+.+|..||.-.... ++     .. +..|.  =.-+|++|+++++....|.+++. .+  |.++
T Consensus       256 L~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI--~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~  333 (406)
T KOG2919|consen  256 LQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRI--LFDLDPKGEILASGDTDGSVRVWDLKDLGNEV  333 (406)
T ss_pred             EEeccCcCeecccccCCCeEEEEeehhccchhhhhhhhccCccceE--EEecCCCCceeeccCCCccEEEEecCCCCCcc
Confidence            8999987 577887 788999998522111 11     01 11111  13335888999887778888886 22  3222


Q ss_pred             EecccCCccccccccEEEcCCCCEEEEe
Q 026389          150 LASHVNGSRINLADDLIAATDGSIYFSV  177 (239)
Q Consensus       150 l~~~~~g~~~~~pn~l~vd~dG~iy~td  177 (239)
                      .+....   -.-.|++...|-=-|..|.
T Consensus       334 sv~~~~---sd~vNgvslnP~mpilats  358 (406)
T KOG2919|consen  334 SVTGNY---SDTVNGVSLNPIMPILATS  358 (406)
T ss_pred             cccccc---cccccceecCcccceeeec
Confidence            211111   1235777777663344443

>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins

Probab=89.16  E-value=18  Score=33.67  Aligned_cols=88  Identities=13%  Similarity=0.197  Sum_probs=43.3

Q ss_pred             CCEEEEeC-----CCeEEEEecCCcEEEeeeccCcCccCeEEcCCCCEEEEeCCCCeEEEccCC-ceEEecccCCccccc
Q 026389           88 GVLYTATR-----DGWIKRLHKNGTWENWKLIGGDTLLGITTTQENEILVCDADKGLLKVTEEG-VTVLASHVNGSRINL  161 (239)
Q Consensus        88 G~ly~~~~-----~g~I~~~~~~G~~~~~~~~~~~p~~Gl~~d~~G~L~v~d~~~g~~~v~~~g-~~~l~~~~~g~~~~~  161 (239)
                      ..||+...     .+..+.+|.+|.++-..........-+...++|+|++... ..+..+|..| +.... ...+....+
T Consensus       114 ~gl~~~~~~~~~~~~~~~~iD~~G~Vrw~~~~~~~~~~~~~~l~nG~ll~~~~-~~~~e~D~~G~v~~~~-~l~~~~~~~  191 (477)
T PF05935_consen  114 DGLYFVNGNDWDSSSYTYLIDNNGDVRWYLPLDSGSDNSFKQLPNGNLLIGSG-NRLYEIDLLGKVIWEY-DLPGGYYDF  191 (477)
T ss_dssp             T-EEEEEETT--BEEEEEEEETTS-EEEEE-GGGT--SSEEE-TTS-EEEEEB-TEEEEE-TT--EEEEE-E--TTEE-B
T ss_pred             CcEEEEeCCCCCCCceEEEECCCccEEEEEccCccccceeeEcCCCCEEEecC-CceEEEcCCCCEEEee-ecCCccccc
Confidence            45664443     5678889988987533332222210256678999988776 6777888777 32222 222211223


Q ss_pred             cccEEEcCCCCEEEEe
Q 026389          162 ADDLIAATDGSIYFSV  177 (239)
Q Consensus       162 pn~l~vd~dG~iy~td  177 (239)
                      =.|+...++|++++..
T Consensus       192 HHD~~~l~nGn~L~l~  207 (477)
T PF05935_consen  192 HHDIDELPNGNLLILA  207 (477)
T ss_dssp             -S-EEE-TTS-EEEEE
T ss_pred             ccccEECCCCCEEEEE
Confidence            4699999999766544

Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.

>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)

Probab=89.05  E-value=15  Score=32.04  Aligned_cols=110  Identities=15%  Similarity=0.222  Sum_probs=61.1

Q ss_pred             CcceEEEcCCCCEEEEe-CCCeEEEEec-CCcEEEeeeccC-------------cCccCeEEc----CCCCEEEEeCC--
Q 026389           78 GPEDVCVDRNGVLYTAT-RDGWIKRLHK-NGTWENWKLIGG-------------DTLLGITTT----QENEILVCDAD--  136 (239)
Q Consensus        78 gPe~ia~d~~G~ly~~~-~~g~I~~~~~-~G~~~~~~~~~~-------------~p~~Gl~~d----~~G~L~v~d~~--  136 (239)
                      --.+|..+++|.+.+++ ....|+++++ +|++. |...+.             .-+ ...+.    .++.|-+-|-.  
T Consensus       145 HiNsV~~~~~G~yLiS~R~~~~i~~I~~~tG~I~-W~lgG~~~~df~~~~~~f~~QH-dar~~~~~~~~~~IslFDN~~~  222 (299)
T PF14269_consen  145 HINSVDKDDDGDYLISSRNTSTIYKIDPSTGKII-WRLGGKRNSDFTLPATNFSWQH-DARFLNESNDDGTISLFDNANS  222 (299)
T ss_pred             EeeeeeecCCccEEEEecccCEEEEEECCCCcEE-EEeCCCCCCcccccCCcEeecc-CCEEeccCCCCCEEEEEcCCCC
Confidence            34567777889988888 6688999994 66653 322111             123 33443    44555555541  


Q ss_pred             ---------CCeEEEcc-CC-ceEEeccc-CCcccc--ccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEE
Q 026389          137 ---------KGLLKVTE-EG-VTVLASHV-NGSRIN--LADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLK  202 (239)
Q Consensus       137 ---------~g~~~v~~-~g-~~~l~~~~-~g~~~~--~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~  202 (239)
                               ..++.++. +. ++++.... ...++.  ..=.+..-++|+++++...                 .|++.-
T Consensus       223 ~~~~~~~s~~~v~~ld~~~~~~~~~~~~~~~~~~~~s~~~G~~Q~L~nGn~li~~g~-----------------~g~~~E  285 (299)
T PF14269_consen  223 DFNGTEPSRGLVLELDPETMTVTLVREYSDHPDGFYSPSQGSAQRLPNGNVLIGWGN-----------------NGRISE  285 (299)
T ss_pred             CCCCCcCCCceEEEEECCCCEEEEEEEeecCCCcccccCCCcceECCCCCEEEecCC-----------------CceEEE
Confidence                     12455663 33 33333222 111221  1224556677888888766                 578888


Q ss_pred             EeCC
Q 026389          203 YDPS  206 (239)
Q Consensus       203 ~d~~  206 (239)
                      |+++
T Consensus       286 ~~~~  289 (299)
T PF14269_consen  286 FTPD  289 (299)
T ss_pred             ECCC
Confidence            8886

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=89.02  E-value=2.7  Score=37.79  Aligned_cols=139  Identities=14%  Similarity=0.217  Sum_probs=79.6

Q ss_pred             ceEeccCCcCCc-ceEEEcCCC-CEEEEeCCCeEEEEecCCcEEEe---eeccCcCccCeEEcCCCCEEEEeCCCCeEEE
Q 026389           68 VTRLGEGILNGP-EDVCVDRNG-VLYTATRDGWIKRLHKNGTWENW---KLIGGDTLLGITTTQENEILVCDADKGLLKV  142 (239)
Q Consensus        68 ~~~l~~g~~~gP-e~ia~d~~G-~ly~~~~~g~I~~~~~~G~~~~~---~~~~~~p~~Gl~~d~~G~L~v~d~~~g~~~v  142 (239)
                      .......+...| ..|.|.|+| +|.+++..|..-.|+  |..-.|   ....-.|.+++.+..+|.-.|+....|.+++
T Consensus        87 f~h~s~NKvkc~V~~v~WtPeGRRLltgs~SGEFtLWN--g~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKy  164 (464)
T KOG0284|consen   87 FVHTSSNKVKCPVNVVRWTPEGRRLLTGSQSGEFTLWN--GTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKY  164 (464)
T ss_pred             eEeccccccccceeeEEEcCCCceeEeecccccEEEec--CceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEe
Confidence            333343444433 357888886 688888888887775  322222   1112233338888899987777666788888


Q ss_pred             cc-CC--ceEEecccCCccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCe-EEEecCCCC
Q 026389          143 TE-EG--VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNE-TSILLDSLF  218 (239)
Q Consensus       143 ~~-~g--~~~l~~~~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~-~~~~~~~l~  218 (239)
                      .. +=  ++.+...    .-....++++.|+...|+|-+.                 .|+|..+|-.-.+ -+++...-+
T Consensus       165 WqpnmnnVk~~~ah----h~eaIRdlafSpnDskF~t~Sd-----------------Dg~ikiWdf~~~kee~vL~GHgw  223 (464)
T KOG0284|consen  165 WQPNMNNVKIIQAH----HAEAIRDLAFSPNDSKFLTCSD-----------------DGTIKIWDFRMPKEERVLRGHGW  223 (464)
T ss_pred             cccchhhhHHhhHh----hhhhhheeccCCCCceeEEecC-----------------CCeEEEEeccCCchhheeccCCC
Confidence            73 32  3322111    1123578899988888888765                 4667667654322 233333334


Q ss_pred             CcceEEEcCCC
Q 026389          219 FANGVALSKDE  229 (239)
Q Consensus       219 ~pnGia~s~dg  229 (239)
                      -+..+.+.|.-
T Consensus       224 dVksvdWHP~k  234 (464)
T KOG0284|consen  224 DVKSVDWHPTK  234 (464)
T ss_pred             CcceeccCCcc
Confidence            45555555543

>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3

Probab=88.95  E-value=1.9  Score=38.84  Aligned_cols=66  Identities=24%  Similarity=0.311  Sum_probs=41.9

Q ss_pred             CCcceEEEcC-CCCEEEEeCCCeEEEEecC--C-cE-EEeeeccC-----cCccCeEE--cCC--CCEEEEeCCCCeEEE
Q 026389           77 NGPEDVCVDR-NGVLYTATRDGWIKRLHKN--G-TW-ENWKLIGG-----DTLLGITT--TQE--NEILVCDADKGLLKV  142 (239)
Q Consensus        77 ~gPe~ia~d~-~G~ly~~~~~g~I~~~~~~--G-~~-~~~~~~~~-----~p~~Gl~~--d~~--G~L~v~d~~~g~~~v  142 (239)
                      ..+||+++|. .|.||++..+--||+|+.+  + .. +.+....+     ..- ||++  ..+  |.|+|++.+.+.+.+
T Consensus       208 sQ~EGCVVDDe~g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvE-Glaly~~~~g~gYLivSsQG~~sf~V  286 (381)
T PF02333_consen  208 SQPEGCVVDDETGRLYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVE-GLALYYGSDGKGYLIVSSQGDNSFAV  286 (381)
T ss_dssp             S-EEEEEEETTTTEEEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EE-EEEEEE-CCC-EEEEEEEGGGTEEEE
T ss_pred             CcceEEEEecccCCEEEecCccEEEEEecCCCCCCcceeeecccccccccCcc-ceEEEecCCCCeEEEEEcCCCCeEEE
Confidence            5799999996 7999999999999999853  2 22 22222111     233 5655  233  457777777766666


Q ss_pred             c
Q 026389          143 T  143 (239)
Q Consensus       143 ~  143 (239)
                      .
T Consensus       287 y  287 (381)
T PF02333_consen  287 Y  287 (381)
T ss_dssp             E
T ss_pred             E
Confidence            5

1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=88.93  E-value=6.2  Score=36.65  Aligned_cols=128  Identities=15%  Similarity=0.117  Sum_probs=68.6

Q ss_pred             CCCEEEEeCCCeEEEEecCCc--E--EEeee---ccCcCccCeEEcCCCCEEEEeCCCCeEEEc-cCC-ceEEecccCCc
Q 026389           87 NGVLYTATRDGWIKRLHKNGT--W--ENWKL---IGGDTLLGITTTQENEILVCDADKGLLKVT-EEG-VTVLASHVNGS  157 (239)
Q Consensus        87 ~G~ly~~~~~g~I~~~~~~G~--~--~~~~~---~~~~p~~Gl~~d~~G~L~v~d~~~g~~~v~-~~g-~~~l~~~~~g~  157 (239)
                      ..++|++. .|.|..||..+.  .  ....+   ...... .+.+.+||+-++.......+.+. ... ...+..+....
T Consensus       431 trhVyTgG-kgcVKVWdis~pg~k~PvsqLdcl~rdnyiR-SckL~pdgrtLivGGeastlsiWDLAapTprikaeltss  508 (705)
T KOG0639|consen  431 TRHVYTGG-KGCVKVWDISQPGNKSPVSQLDCLNRDNYIR-SCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSS  508 (705)
T ss_pred             cceeEecC-CCeEEEeeccCCCCCCccccccccCccccee-eeEecCCCceEEeccccceeeeeeccCCCcchhhhcCCc
Confidence            45667654 455666664321  1  11111   122333 55666888644443334445544 222 11111111111


Q ss_pred             cccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecCC-CCCcceEEEcCCCCEEEE
Q 026389          158 RINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDS-LFFANGVALSKDEDYLVV  234 (239)
Q Consensus       158 ~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~~-l~~pnGia~s~dg~~lyv  234 (239)
                       --.+..+++.+|-.+-|+..+                 .|.|..||.....+..-..+ --.+.-|.+++||..||.
T Consensus       509 -apaCyALa~spDakvcFsccs-----------------dGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWT  568 (705)
T KOG0639|consen  509 -APACYALAISPDAKVCFSCCS-----------------DGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWT  568 (705)
T ss_pred             -chhhhhhhcCCccceeeeecc-----------------CCcEEEEEcccceeeecccCCCCCceeEEecCCCceeec
Confidence             124678999999999998876                 58899999864433222221 223455788999988764

>PF06739 SBBP: Beta-propeller repeat; InterPro: IPR010620 This family is related to IPR001680 from INTERPRO and is likely to also form a beta-propeller

Probab=88.83  E-value=0.78  Score=26.90  Aligned_cols=17  Identities=29%  Similarity=0.559  Sum_probs=11.7

Q ss_pred             CCcceEEEcCCCCEEEE
Q 026389           77 NGPEDVCVDRNGVLYTA   93 (239)
Q Consensus        77 ~gPe~ia~d~~G~ly~~   93 (239)
                      ..+.+|++|++|++|++
T Consensus        13 ~~~~~IavD~~GNiYv~   29 (38)
T PF06739_consen   13 DYGNGIAVDSNGNIYVT   29 (38)
T ss_pred             eeEEEEEECCCCCEEEE
Confidence            35677777777777754

SBBP stands for Seven Bladed Beta Propeller.

>PF14339 DUF4394: Domain of unknown function (DUF4394)

Probab=88.82  E-value=4.4  Score=34.02  Aligned_cols=26  Identities=15%  Similarity=0.288  Sum_probs=14.7

Q ss_pred             CeEEc-CCCCEEEEeCCCCeEEEc-cCC
Q 026389          121 GITTT-QENEILVCDADKGLLKVT-EEG  146 (239)
Q Consensus       121 Gl~~d-~~G~L~v~d~~~g~~~v~-~~g  146 (239)
                      ||.+. .+|+||-.....+++.++ ..|
T Consensus        31 GID~Rpa~G~LYgl~~~g~lYtIn~~tG   58 (236)
T PF14339_consen   31 GIDFRPANGQLYGLGSTGRLYTINPATG   58 (236)
T ss_pred             EEEeecCCCCEEEEeCCCcEEEEECCCC
Confidence            45444 345666665556666666 355

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=88.69  E-value=0.84  Score=41.62  Aligned_cols=61  Identities=28%  Similarity=0.284  Sum_probs=32.2

Q ss_pred             cccccEEEcCCC-CEEEEeCCCCcCcccccccceeecCCceEEEEeCCC-CeE----EEecCCC---------------C
Q 026389          160 NLADDLIAATDG-SIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSL-NET----SILLDSL---------------F  218 (239)
Q Consensus       160 ~~pn~l~vd~dG-~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~-~~~----~~~~~~l---------------~  218 (239)
                      ..+.||.++-|. .|||+...                 +|.|..||... ...    ++.+.+.               .
T Consensus       312 ~LitDI~iSlDDrfLYvs~W~-----------------~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~G  374 (461)
T PF05694_consen  312 PLITDILISLDDRFLYVSNWL-----------------HGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRG  374 (461)
T ss_dssp             -----EEE-TTS-EEEEEETT-----------------TTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S
T ss_pred             CceEeEEEccCCCEEEEEccc-----------------CCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCC
Confidence            357899999998 68999865                 57787887532 111    1112221               2


Q ss_pred             CcceEEEcCCCCEEEEEeC
Q 026389          219 FANGVALSKDEDYLVVCET  237 (239)
Q Consensus       219 ~pnGia~s~dg~~lyvadt  237 (239)
                      .|+-|.+|.||++|||+.|
T Consensus       375 gPqMvqlS~DGkRlYvTnS  393 (461)
T PF05694_consen  375 GPQMVQLSLDGKRLYVTNS  393 (461)
T ss_dssp             ----EEE-TTSSEEEEE--
T ss_pred             CCCeEEEccCCeEEEEEee
Confidence            5788999999999999987

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=88.65  E-value=14  Score=31.44  Aligned_cols=98  Identities=15%  Similarity=0.217  Sum_probs=57.6

Q ss_pred             CcceEEEcCCCCEEEEeCCCeEEEEecC--CcEEEeeeccCcCccCeEEcCCCCEEEEeCCCC-eEEEc-cCCceEEecc
Q 026389           78 GPEDVCVDRNGVLYTATRDGWIKRLHKN--GTWENWKLIGGDTLLGITTTQENEILVCDADKG-LLKVT-EEGVTVLASH  153 (239)
Q Consensus        78 gPe~ia~d~~G~ly~~~~~g~I~~~~~~--G~~~~~~~~~~~p~~Gl~~d~~G~L~v~d~~~g-~~~v~-~~g~~~l~~~  153 (239)
                      -+.++.+.++|++.+....+.|.-||++  +.++.+.- ..... ...+.|+..+|||..... ++++| ..|.++-. .
T Consensus       186 ~VtSlEvs~dG~ilTia~gssV~Fwdaksf~~lKs~k~-P~nV~-SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~-~  262 (334)
T KOG0278|consen  186 PVTSLEVSQDGRILTIAYGSSVKFWDAKSFGLLKSYKM-PCNVE-SASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGS-Y  262 (334)
T ss_pred             CCcceeeccCCCEEEEecCceeEEeccccccceeeccC-ccccc-cccccCCCceEEecCcceEEEEEeccCCceeee-c
Confidence            4567777788888877777777777763  22222211 11222 334457778999975544 44566 56633221 0


Q ss_pred             cCCccccccccEEEcCCCCEEEEeCC
Q 026389          154 VNGSRINLADDLIAATDGSIYFSVAS  179 (239)
Q Consensus       154 ~~g~~~~~pn~l~vd~dG~iy~td~~  179 (239)
                      ..| -+.-..-+.+.|||.+|.+.+.
T Consensus       263 nkg-h~gpVhcVrFSPdGE~yAsGSE  287 (334)
T KOG0278|consen  263 NKG-HFGPVHCVRFSPDGELYASGSE  287 (334)
T ss_pred             ccC-CCCceEEEEECCCCceeeccCC
Confidence            111 1223457889999999998764

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=88.62  E-value=2  Score=24.88  Aligned_cols=37  Identities=14%  Similarity=0.235  Sum_probs=26.6

Q ss_pred             CCEEEEe-CCCeEEEEec-CCcEEEeeeccCcCccCeEEc
Q 026389           88 GVLYTAT-RDGWIKRLHK-NGTWENWKLIGGDTLLGITTT  125 (239)
Q Consensus        88 G~ly~~~-~~g~I~~~~~-~G~~~~~~~~~~~p~~Gl~~d  125 (239)
                      ++||+++ .++.|..+|. +++.......+..|. +++++
T Consensus         4 ~~lyv~~~~~~~v~~id~~~~~~~~~i~vg~~P~-~i~~~   42 (42)
T TIGR02276         4 TKLYVTNSGSNTVSVIDTATNKVIATIPVGGYPF-GVAVS   42 (42)
T ss_pred             CEEEEEeCCCCEEEEEECCCCeEEEEEECCCCCc-eEEeC
Confidence            4699888 6789999996 344444455577898 88774

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=88.53  E-value=4.7  Score=38.86  Aligned_cols=135  Identities=16%  Similarity=0.247  Sum_probs=74.2

Q ss_pred             ceEEEcCCCCEE-EEeCCCeEEEEe-cCCcE-EEeeeccCcCccCeEEcCCCCEEEEeCCCCeEEEc--cCC-ceEEecc
Q 026389           80 EDVCVDRNGVLY-TATRDGWIKRLH-KNGTW-ENWKLIGGDTLLGITTTQENEILVCDADKGLLKVT--EEG-VTVLASH  153 (239)
Q Consensus        80 e~ia~d~~G~ly-~~~~~g~I~~~~-~~G~~-~~~~~~~~~p~~Gl~~d~~G~L~v~d~~~g~~~v~--~~g-~~~l~~~  153 (239)
                      ..+++++|+... +....+-+..|+ +.|+. +.|......|-..++|++.|.|+.+-...|.+++.  .++ ...-...
T Consensus        66 ta~~l~~d~~~L~~a~rs~llrv~~L~tgk~irswKa~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~th~fkG  145 (775)
T KOG0319|consen   66 TALALTPDEEVLVTASRSQLLRVWSLPTGKLIRSWKAIHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGYCTHSFKG  145 (775)
T ss_pred             heeeecCCccEEEEeeccceEEEEEcccchHhHhHhhccCCCeEEEEEcCCCceEEeccccceEEEEEeeCCEEEEEecC
Confidence            357788876544 444444333344 35542 34433333443389999999777666557777775  444 3332222


Q ss_pred             cCCccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeE--EEecCCCCCcceEEEcCCCCE
Q 026389          154 VNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNET--SILLDSLFFANGVALSKDEDY  231 (239)
Q Consensus       154 ~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~--~~~~~~l~~pnGia~s~dg~~  231 (239)
                      ..|    -...+.+.++-+.|.               +..+...+.+..||..++..  .++......-.++++++|+..
T Consensus       146 ~gG----vVssl~F~~~~~~~l---------------L~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~  206 (775)
T KOG0319|consen  146 HGG----VVSSLLFHPHWNRWL---------------LASGATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSEDSLE  206 (775)
T ss_pred             CCc----eEEEEEeCCccchhh---------------eeecCCCceEEEEEcccCchHHHHHHhhhhheeeeeeccCCce
Confidence            222    123444554432111               11223468888898875544  223344567789999999876


Q ss_pred             EE
Q 026389          232 LV  233 (239)
Q Consensus       232 ly  233 (239)
                      ++
T Consensus       207 ~l  208 (775)
T KOG0319|consen  207 LL  208 (775)
T ss_pred             EE
Confidence            54

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=88.51  E-value=15  Score=31.54  Aligned_cols=63  Identities=17%  Similarity=0.183  Sum_probs=38.7

Q ss_pred             EEcC-CCCEEEEeCCCeEEEEecCCcEEEeeeccC--cCccCeEEcC-CCCEEEEeCCCCeEEEc-cCC
Q 026389           83 CVDR-NGVLYTATRDGWIKRLHKNGTWENWKLIGG--DTLLGITTTQ-ENEILVCDADKGLLKVT-EEG  146 (239)
Q Consensus        83 a~d~-~G~ly~~~~~g~I~~~~~~G~~~~~~~~~~--~p~~Gl~~d~-~G~L~v~d~~~g~~~v~-~~g  146 (239)
                      ..|. .|.||.+++|+..+.+|+.-+--++...++  .-. +-++++ ++.||++.....++++. .++
T Consensus       100 ~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~-sP~i~~g~~sly~a~t~G~vlavt~~~~  167 (354)
T KOG4649|consen  100 QCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFV-SPVIAPGDGSLYAAITAGAVLAVTKNPY  167 (354)
T ss_pred             EEcCCCceEEEecCCCcEEEecccccceEEecccCCceec-cceecCCCceEEEEeccceEEEEccCCC
Confidence            3444 457788888888888886433223332222  122 444554 78899998877788887 344

>PRK13614 lipoprotein LpqB; Provisional

Probab=88.49  E-value=23  Score=33.83  Aligned_cols=99  Identities=20%  Similarity=0.253  Sum_probs=54.2

Q ss_pred             cCCcceEEEcCCCCEEEEeCC--CeEEEEecCCc--EE-----Ee--eeccCc-CccCeEEcCCC-CEEE-E-eCCCCeE
Q 026389           76 LNGPEDVCVDRNGVLYTATRD--GWIKRLHKNGT--WE-----NW--KLIGGD-TLLGITTTQEN-EILV-C-DADKGLL  140 (239)
Q Consensus        76 ~~gPe~ia~d~~G~ly~~~~~--g~I~~~~~~G~--~~-----~~--~~~~~~-p~~Gl~~d~~G-~L~v-~-d~~~g~~  140 (239)
                      +..|   .||.+|.+|+...+  ++|+++..+|+  ..     ..  ....++ .. .+++.+|| |+.+ . +.++..+
T Consensus       385 Lt~P---S~d~~g~vWtv~~g~~~~vv~~~~~g~~~~~~~~~~~v~~~~l~g~~I~-~lrvSrDG~R~Avi~~~~g~~~V  460 (573)
T PRK13614        385 LTRP---SFSPQDWVWTAGPGGNGRIVAYRPTGVAEGAQAPTVTLTADWLAGRTVK-ELRVSREGVRALVISEQNGKSRV  460 (573)
T ss_pred             ccCC---cccCCCCEEEeeCCCCceEEEEecCCCcccccccceeecccccCCCeeE-EEEECCCccEEEEEEEeCCccEE
Confidence            4556   88888999987754  48999876553  10     11  112233 44 78888999 5433 3 2333223


Q ss_pred             EE-----ccCC-ceEEecccCCccccccccEEEcCCCCEEEEeC
Q 026389          141 KV-----TEEG-VTVLASHVNGSRINLADDLIAATDGSIYFSVA  178 (239)
Q Consensus       141 ~v-----~~~g-~~~l~~~~~g~~~~~pn~l~vd~dG~iy~td~  178 (239)
                      .+     +.+| ...|.....=.....+.+++.-.++.|.+.-.
T Consensus       461 ~va~V~R~~~G~P~~L~~~~~~~~~~~~~sl~W~~~~sl~V~~~  504 (573)
T PRK13614        461 QVAGIVRNEDGTPRELTAPITLAADSDADTGAWVGDSTVVVTKA  504 (573)
T ss_pred             EEEEEEeCCCCCeEEccCceecccCCCcceeEEcCCCEEEEEec
Confidence            22     3455 23443211100123567788778888877653

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=88.38  E-value=11  Score=32.70  Aligned_cols=129  Identities=16%  Similarity=0.185  Sum_probs=69.0

Q ss_pred             eEEEcCCCCEE-EEeCCCeEEEEec-CCcE-EEeeeccCcCccCeEEcCCCCEEEE-eCCCCeEEEc--cC-C-ceEEec
Q 026389           81 DVCVDRNGVLY-TATRDGWIKRLHK-NGTW-ENWKLIGGDTLLGITTTQENEILVC-DADKGLLKVT--EE-G-VTVLAS  152 (239)
Q Consensus        81 ~ia~d~~G~ly-~~~~~g~I~~~~~-~G~~-~~~~~~~~~p~~Gl~~d~~G~L~v~-d~~~g~~~v~--~~-g-~~~l~~  152 (239)
                      ++.+.+|++.. .+..|.+|..||. .|+. ..+.......+ .+....-|-..|+ -+..+.+++.  .. . .+++..
T Consensus        95 ~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~vN-s~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~  173 (338)
T KOG0265|consen   95 ELHGMRDGSHILSCGTDKTVRGWDAETGKRIRKHKGHTSFVN-SLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFEN  173 (338)
T ss_pred             eeeeccCCCEEEEecCCceEEEEecccceeeehhccccceee-ecCccccCCeEEEecCCCceEEEEeecccchhhcccc
Confidence            45666777644 5558889999985 4542 22222222333 3333344544444 3446667664  22 2 333321


Q ss_pred             ccCCccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecCCCC-CcceEEEcCCCCE
Q 026389          153 HVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLF-FANGVALSKDEDY  231 (239)
Q Consensus       153 ~~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~~l~-~pnGia~s~dg~~  231 (239)
                      .+      ....+.+..++.=.++..                 -++.|-.||+..++......|-. -..||.++++|.+
T Consensus       174 ky------qltAv~f~d~s~qv~sgg-----------------Idn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~  230 (338)
T KOG0265|consen  174 KY------QLTAVGFKDTSDQVISGG-----------------IDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSF  230 (338)
T ss_pred             ce------eEEEEEecccccceeecc-----------------ccCceeeeccccCcceEEeecccCceeeEEeccCCCc
Confidence            11      123455555543333322                 24667788886566555555433 3488999999987


Q ss_pred             EE
Q 026389          232 LV  233 (239)
Q Consensus       232 ly  233 (239)
                      +.
T Consensus       231 ll  232 (338)
T KOG0265|consen  231 LL  232 (338)
T ss_pred             cc
Confidence            64

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=88.14  E-value=21  Score=32.84  Aligned_cols=130  Identities=12%  Similarity=0.146  Sum_probs=71.8

Q ss_pred             EEEcC-CCCEEEEeCCCeEEE-EecCCcEEEeeeccCcC---ccCeEEc-CCCCEEEEeCCCCeEEEccCC--ceEEecc
Q 026389           82 VCVDR-NGVLYTATRDGWIKR-LHKNGTWENWKLIGGDT---LLGITTT-QENEILVCDADKGLLKVTEEG--VTVLASH  153 (239)
Q Consensus        82 ia~d~-~G~ly~~~~~g~I~~-~~~~G~~~~~~~~~~~p---~~Gl~~d-~~G~L~v~d~~~g~~~v~~~g--~~~l~~~  153 (239)
                      +-|.+ ++.+++...|+++.+ |+.++... ..+..++.   . ..++. .++.++++.++.|.+++....  ...+.+.
T Consensus       116 ~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v-~~~l~~htDYVR-~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~el  193 (487)
T KOG0310|consen  116 TKFSPQDNTMLVSGSDDKVVKYWDLSTAYV-QAELSGHTDYVR-CGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVEL  193 (487)
T ss_pred             EEecccCCeEEEecCCCceEEEEEcCCcEE-EEEecCCcceeE-eeccccCCCeEEEecCCCceEEEEEeccCCceeEEe
Confidence            34445 455665555666655 44555432 22222221   1 22233 455799999999999987432  2334433


Q ss_pred             cCCccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCC-CeEEEecC-CCCCcceEEEcCCCCE
Q 026389          154 VNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSL-NETSILLD-SLFFANGVALSKDEDY  231 (239)
Q Consensus       154 ~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~-~~~~~~~~-~l~~pnGia~s~dg~~  231 (239)
                      -.|.|   ...+..-|.|.++++...                  ..+-.||..+ ++...... ....-..+++..|++.
T Consensus       194 nhg~p---Ve~vl~lpsgs~iasAgG------------------n~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~r  252 (487)
T KOG0310|consen  194 NHGCP---VESVLALPSGSLIASAGG------------------NSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTR  252 (487)
T ss_pred             cCCCc---eeeEEEcCCCCEEEEcCC------------------CeEEEEEecCCceehhhhhcccceEEEEEeecCCce
Confidence            34544   357788888888888754                  3455677653 33322222 2233466777777766


Q ss_pred             EEE
Q 026389          232 LVV  234 (239)
Q Consensus       232 lyv  234 (239)
                      |+-
T Consensus       253 LlS  255 (487)
T KOG0310|consen  253 LLS  255 (487)
T ss_pred             Eee
Confidence            653

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=88.13  E-value=1  Score=39.27  Aligned_cols=58  Identities=16%  Similarity=0.159  Sum_probs=42.6

Q ss_pred             cccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecCCCCCc-ceEEEcCCCCEEEEEe
Q 026389          162 ADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFA-NGVALSKDEDYLVVCE  236 (239)
Q Consensus       162 pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~~l~~p-nGia~s~dg~~lyvad  236 (239)
                      .+-+.+.+.|.+......                 +|||..||..|..+..++..-..| ..+|+|+||+.|+.+.
T Consensus        26 a~~~~Fs~~G~~lAvGc~-----------------nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS   84 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGCA-----------------NGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSS   84 (405)
T ss_pred             cceEEeccCcceeeeecc-----------------CCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeec
Confidence            567778888875554433                 699999999987765555554444 7899999999887653

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=88.11  E-value=10  Score=33.96  Aligned_cols=123  Identities=11%  Similarity=0.008  Sum_probs=68.4

Q ss_pred             EEEEeCCCeEEEEecCCcEEEee--eccCcCccCeEEcCCCC-EEEEeCCCCeEEEccCCceEEecccCCccccccccEE
Q 026389           90 LYTATRDGWIKRLHKNGTWENWK--LIGGDTLLGITTTQENE-ILVCDADKGLLKVTEEGVTVLASHVNGSRINLADDLI  166 (239)
Q Consensus        90 ly~~~~~g~I~~~~~~G~~~~~~--~~~~~p~~Gl~~d~~G~-L~v~d~~~g~~~v~~~g~~~l~~~~~g~~~~~pn~l~  166 (239)
                      +.+++.-+++..||+.-+.+.+.  +....|++.+...++|+ +|+++....+..+|-.+..++...+.|. -..+.+|.
T Consensus       219 fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~-tGsirsih  297 (412)
T KOG3881|consen  219 FATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGI-TGSIRSIH  297 (412)
T ss_pred             EEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCCc-cCCcceEE
Confidence            34555788898898643222222  22234443566678885 7888887777788843323332222221 13578899


Q ss_pred             EcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecCCCCCcceEEEcCCCC
Q 026389          167 AATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDED  230 (239)
Q Consensus       167 vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~~l~~pnGia~s~dg~  230 (239)
                      .++.+.+..+-.-.+                 .|-.||.++.++..-.---..+|+|-+.++-+
T Consensus       298 ~hp~~~~las~GLDR-----------------yvRIhD~ktrkll~kvYvKs~lt~il~~~~~n  344 (412)
T KOG3881|consen  298 CHPTHPVLASCGLDR-----------------YVRIHDIKTRKLLHKVYVKSRLTFILLRDDVN  344 (412)
T ss_pred             EcCCCceEEeeccce-----------------eEEEeecccchhhhhhhhhccccEEEecCCcc
Confidence            999888776654311                 23346665432211111234678888866543

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=87.87  E-value=3.5  Score=38.50  Aligned_cols=85  Identities=16%  Similarity=0.164  Sum_probs=52.5

Q ss_pred             CEEEEeCCCeEEEEecCCcEEEee-eccCcCccCeEEcCCCCEEEEeCCCCeEEEc-cCC--ceEEecccCCcccccccc
Q 026389           89 VLYTATRDGWIKRLHKNGTWENWK-LIGGDTLLGITTTQENEILVCDADKGLLKVT-EEG--VTVLASHVNGSRINLADD  164 (239)
Q Consensus        89 ~ly~~~~~g~I~~~~~~G~~~~~~-~~~~~p~~Gl~~d~~G~L~v~d~~~g~~~v~-~~g--~~~l~~~~~g~~~~~pn~  164 (239)
                      .+.+++.||++..++..|+++... ...+..+ .-++++||.-+++....|.+++. ..|  .++++...+  +   ..-
T Consensus        77 ~~~i~s~DGkf~il~k~~rVE~sv~AH~~A~~-~gRW~~dGtgLlt~GEDG~iKiWSrsGMLRStl~Q~~~--~---v~c  150 (737)
T KOG1524|consen   77 TLLICSNDGRFVILNKSARVERSISAHAAAIS-SGRWSPDGAGLLTAGEDGVIKIWSRSGMLRSTVVQNEE--S---IRC  150 (737)
T ss_pred             eEEEEcCCceEEEecccchhhhhhhhhhhhhh-hcccCCCCceeeeecCCceEEEEeccchHHHHHhhcCc--e---eEE
Confidence            455777899999999888775432 2334444 55667888766776678888887 677  444433211  1   234


Q ss_pred             EEEcCCC-CEEEEeCC
Q 026389          165 LIAATDG-SIYFSVAS  179 (239)
Q Consensus       165 l~vd~dG-~iy~td~~  179 (239)
                      ++.+|+- ++.++...
T Consensus       151 ~~W~p~S~~vl~c~g~  166 (737)
T KOG1524|consen  151 ARWAPNSNSIVFCQGG  166 (737)
T ss_pred             EEECCCCCceEEecCC
Confidence            5556653 55555443

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=87.80  E-value=11  Score=32.94  Aligned_cols=55  Identities=15%  Similarity=0.279  Sum_probs=37.9

Q ss_pred             CeEEcCCCCEEEEeCCCCeEEEcc--CC--ceEEecccCCccccccccEEEcCCCCEEEEeC
Q 026389          121 GITTTQENEILVCDADKGLLKVTE--EG--VTVLASHVNGSRINLADDLIAATDGSIYFSVA  178 (239)
Q Consensus       121 Gl~~d~~G~L~v~d~~~g~~~v~~--~g--~~~l~~~~~g~~~~~pn~l~vd~dG~iy~td~  178 (239)
                      .+.....|+|||+.+..|-+++.+  .+  ++.+...-+|..   .-...+..+|....+..
T Consensus       266 ~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gse---vcSa~Ftkn~kyiLsSG  324 (430)
T KOG0640|consen  266 QVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSE---VCSAVFTKNGKYILSSG  324 (430)
T ss_pred             EEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCce---eeeEEEccCCeEEeecC
Confidence            466678899999999999998863  33  566655444432   34567888887666643

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=87.77  E-value=13  Score=32.91  Aligned_cols=136  Identities=19%  Similarity=0.145  Sum_probs=71.0

Q ss_pred             eEEEcCCCC-EEEEe--CCC---eEEEEec-CCcEEEeee--ccC---cCccCeEEc-CCC-C-EEEEeCC--CCeEEEc
Q 026389           81 DVCVDRNGV-LYTAT--RDG---WIKRLHK-NGTWENWKL--IGG---DTLLGITTT-QEN-E-ILVCDAD--KGLLKVT  143 (239)
Q Consensus        81 ~ia~d~~G~-ly~~~--~~g---~I~~~~~-~G~~~~~~~--~~~---~p~~Gl~~d-~~G-~-L~v~d~~--~g~~~v~  143 (239)
                      .+.|.+++. +++.-  .++   ++..++. .|+.+....  ..+   ... ...+- +++ . |++.+..  .+++.++
T Consensus       188 ~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~-~~~~~~~~~~~~l~~s~~~G~~hly~~~  266 (353)
T PF00930_consen  188 RVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYD-PPHFLGPDGNEFLWISERDGYRHLYLYD  266 (353)
T ss_dssp             EEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSS-EEEE-TTTSSEEEEEEETTSSEEEEEEE
T ss_pred             cceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeec-ccccccCCCCEEEEEEEcCCCcEEEEEc
Confidence            466767776 76543  333   3455554 344332211  111   112 33332 444 3 4555521  2455556


Q ss_pred             cCC--ceEEecccCCccccccccEEEcCCC-CEEEEeCCCCcCcccccccceeecCCceEEEEeCC-CCeEEEecCCCCC
Q 026389          144 EEG--VTVLASHVNGSRINLADDLIAATDG-SIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPS-LNETSILLDSLFF  219 (239)
Q Consensus       144 ~~g--~~~l~~~~~g~~~~~pn~l~vd~dG-~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~-~~~~~~~~~~l~~  219 (239)
                      .++  .+.|..   | .+.--.-+.+|+++ .|||+.....             ...-.||+++.+ +++++.+-.. ..
T Consensus       267 ~~~~~~~~lT~---G-~~~V~~i~~~d~~~~~iyf~a~~~~-------------p~~r~lY~v~~~~~~~~~~LT~~-~~  328 (353)
T PF00930_consen  267 LDGGKPRQLTS---G-DWEVTSILGWDEDNNRIYFTANGDN-------------PGERHLYRVSLDSGGEPKCLTCE-DG  328 (353)
T ss_dssp             TTSSEEEESS----S-SS-EEEEEEEECTSSEEEEEESSGG-------------TTSBEEEEEETTETTEEEESSTT-SS
T ss_pred             ccccceecccc---C-ceeecccceEcCCCCEEEEEecCCC-------------CCceEEEEEEeCCCCCeEeccCC-CC
Confidence            444  343322   2 11112246778875 8999876511             123579999998 7887766543 33


Q ss_pred             cc-eEEEcCCCCEEEEE
Q 026389          220 AN-GVALSKDEDYLVVC  235 (239)
Q Consensus       220 pn-Gia~s~dg~~lyva  235 (239)
                      .+ .+.|||||+++..+
T Consensus       329 ~~~~~~~Spdg~y~v~~  345 (353)
T PF00930_consen  329 DHYSASFSPDGKYYVDT  345 (353)
T ss_dssp             TTEEEEE-TTSSEEEEE
T ss_pred             CceEEEECCCCCEEEEE
Confidence            44 89999999977654

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=87.65  E-value=18  Score=31.91  Aligned_cols=97  Identities=10%  Similarity=0.078  Sum_probs=50.1

Q ss_pred             CcCccCeEEcCCCCEEEEeCCCCeEEEcc--CC--ceEEecccCCccccccccEEEcCCC--CEEEEeCCCCcCcccccc
Q 026389          116 GDTLLGITTTQENEILVCDADKGLLKVTE--EG--VTVLASHVNGSRINLADDLIAATDG--SIYFSVASTKFGLHNWGL  189 (239)
Q Consensus       116 ~~p~~Gl~~d~~G~L~v~d~~~g~~~v~~--~g--~~~l~~~~~g~~~~~pn~l~vd~dG--~iy~td~~~~~~~~~~~~  189 (239)
                      ...+ -..|..||.-+++-+..|.+++..  .+  ...+...-.+   ...|.+..-|..  .+.+.+-+          
T Consensus       349 Syvn-~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d---~~vnsv~~~PKnpeh~iVCNrs----------  414 (508)
T KOG0275|consen  349 SYVN-EATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTD---YPVNSVILLPKNPEHFIVCNRS----------  414 (508)
T ss_pred             cccc-ceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCc---ccceeEEEcCCCCceEEEEcCC----------
Confidence            3445 677778887666666678888863  32  3333211111   123444444442  34444433          


Q ss_pred             cceeecCCceEEEEeCCCCeEEEecCC----CCCcceEEEcCCCCEEEEE
Q 026389          190 DLLEAKPHGKLLKYDPSLNETSILLDS----LFFANGVALSKDEDYLVVC  235 (239)
Q Consensus       190 ~~~e~~~~g~v~~~d~~~~~~~~~~~~----l~~pnGia~s~dg~~lyva  235 (239)
                              ..||..+..+.-++.+..+    .-|. ..++||.|.++|..
T Consensus       415 --------ntv~imn~qGQvVrsfsSGkREgGdFi-~~~lSpkGewiYci  455 (508)
T KOG0275|consen  415 --------NTVYIMNMQGQVVRSFSSGKREGGDFI-NAILSPKGEWIYCI  455 (508)
T ss_pred             --------CeEEEEeccceEEeeeccCCccCCceE-EEEecCCCcEEEEE
Confidence                    4566666653323333222    2232 35688889888864

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=87.50  E-value=6  Score=32.78  Aligned_cols=54  Identities=9%  Similarity=0.150  Sum_probs=34.7

Q ss_pred             CCCCEEEEeCC-CCeEEEcc-CC-ceEEec--------ccCCccccccccEEEcCCC-CEEEEeCC
Q 026389          126 QENEILVCDAD-KGLLKVTE-EG-VTVLAS--------HVNGSRINLADDLIAATDG-SIYFSVAS  179 (239)
Q Consensus       126 ~~G~L~v~d~~-~g~~~v~~-~g-~~~l~~--------~~~g~~~~~pn~l~vd~dG-~iy~td~~  179 (239)
                      -+|.||.--.. ..++++++ +| +....+        ..++...+-+||++.++++ ++|+|.-.
T Consensus       184 VdG~lyANVw~t~~I~rI~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTGK~  249 (262)
T COG3823         184 VDGELYANVWQTTRIARIDPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITGKL  249 (262)
T ss_pred             eccEEEEeeeeecceEEEcCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEecCc
Confidence            46777765443 46778884 67 332221        1233445689999999986 99999643

>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others

Probab=87.42  E-value=3.6  Score=43.26  Aligned_cols=117  Identities=17%  Similarity=0.250  Sum_probs=59.3

Q ss_pred             eCCCeEEEEecC-CcEEEeeeccCcCccCeEEcCCCCEEEEeCCCCeEEEccCC-ceEEecccCCccccccccEEEcCCC
Q 026389           94 TRDGWIKRLHKN-GTWENWKLIGGDTLLGITTTQENEILVCDADKGLLKVTEEG-VTVLASHVNGSRINLADDLIAATDG  171 (239)
Q Consensus        94 ~~~g~I~~~~~~-G~~~~~~~~~~~p~~Gl~~d~~G~L~v~d~~~g~~~v~~~g-~~~l~~~~~g~~~~~pn~l~vd~dG  171 (239)
                      .+++++|+|+++ +.|+........+++-|....||.||. -.+..++.+...+ .+..++.        .-...|.++|
T Consensus       379 lHd~~LY~~d~~~~~Wk~~~~~~d~~~S~Ls~qgdG~lYA-k~~~~l~nLSs~~~~~~~v~~--------l~sfSv~~~g  449 (1774)
T PF11725_consen  379 LHDDRLYQFDPNTARWKPPPDKSDTPFSSLSRQGDGKLYA-KDDDTLVNLSSGQMSEAEVDK--------LKSFSVAPDG  449 (1774)
T ss_pred             eecCceeeeccccceecCCCCcccchhhhhcccCCCceEe-cCCCceeecCCCCcchhhhhh--------cccccccCCC
Confidence            356788888775 444422233444553566678899997 4334444444333 2222211        1234566677


Q ss_pred             CE-EEEeCCCCcCcccccccceeecCCc-eEEEEeCCCCe-------EEEecCCCCCcceEEEcCCCCEEEEEeC
Q 026389          172 SI-YFSVASTKFGLHNWGLDLLEAKPHG-KLLKYDPSLNE-------TSILLDSLFFANGVALSKDEDYLVVCET  237 (239)
Q Consensus       172 ~i-y~td~~~~~~~~~~~~~~~e~~~~g-~v~~~d~~~~~-------~~~~~~~l~~pnGia~s~dg~~lyvadt  237 (239)
                      ++ ..++..+                .+ .+...++..+.       .-.+.++-..+..|+|++|  +|||+|+
T Consensus       450 ~vA~L~~~d~----------------q~~qL~~m~~~~a~~~p~~~~~L~L~dG~a~A~~VgLs~d--rLFvADs  506 (1774)
T PF11725_consen  450 TVAMLTGKDG----------------QTLQLHDMSPVDAPPTPRKTKTLQLADGKAQAQSVGLSND--RLFVADS  506 (1774)
T ss_pred             ceeeeecCCC----------------cceeeeccCccccccCccceeeeeccCCchhhhheeecCC--eEEEEeC
Confidence            65 3443321                11 23333322111       1122345556777888876  5899886

It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas [].

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=87.35  E-value=19  Score=31.36  Aligned_cols=76  Identities=18%  Similarity=0.219  Sum_probs=48.2

Q ss_pred             CcceEEEcC-CCCEEEEeCCCeEEEEecCCcEEEeeeccCcCccCeEEcCCCCEEEEeCCCCeEEEcc-CC-ceEEecc
Q 026389           78 GPEDVCVDR-NGVLYTATRDGWIKRLHKNGTWENWKLIGGDTLLGITTTQENEILVCDADKGLLKVTE-EG-VTVLASH  153 (239)
Q Consensus        78 gPe~ia~d~-~G~ly~~~~~g~I~~~~~~G~~~~~~~~~~~p~~Gl~~d~~G~L~v~d~~~g~~~v~~-~g-~~~l~~~  153 (239)
                      +=.++-+++ .+.|.+++.||.+..|+.+..-....-..+.|++..+|..+-.+|+.+...-+.++|- .+ ...+...
T Consensus        15 ~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~~~~plL~c~F~d~~~~~~G~~dg~vr~~Dln~~~~~~igth   93 (323)
T KOG1036|consen   15 GISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFKHGAPLLDCAFADESTIVTGGLDGQVRRYDLNTGNEDQIGTH   93 (323)
T ss_pred             ceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhheecCCceeeeeccCCceEEEeccCceEEEEEecCCcceeeccC
Confidence            334567776 5688899999999888854322111223456665888877668888877655556663 44 4445443

>smart00564 PQQ beta-propeller repeat

Probab=86.93  E-value=1.3  Score=24.35  Aligned_cols=26  Identities=27%  Similarity=0.514  Sum_probs=19.3

Q ss_pred             cCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEE
Q 026389          168 ATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETS  211 (239)
Q Consensus       168 d~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~  211 (239)
                      ..+|.+|+++..                  |.++.+|.++|+..
T Consensus         4 ~~~~~v~~~~~~------------------g~l~a~d~~~G~~~   29 (33)
T smart00564        4 LSDGTVYVGSTD------------------GTLYALDAKTGEIL   29 (33)
T ss_pred             EECCEEEEEcCC------------------CEEEEEEcccCcEE
Confidence            346778887643                  89999999877653

Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=86.81  E-value=6.7  Score=35.79  Aligned_cols=105  Identities=13%  Similarity=0.113  Sum_probs=68.2

Q ss_pred             eEeccCCcCCcceEEEcCCCCEEEEeCCCeEEEEecCCcEEEeee-------cc-------CcCccCeEEcCCCCEEEEe
Q 026389           69 TRLGEGILNGPEDVCVDRNGVLYTATRDGWIKRLHKNGTWENWKL-------IG-------GDTLLGITTTQENEILVCD  134 (239)
Q Consensus        69 ~~l~~g~~~gPe~ia~d~~G~ly~~~~~g~I~~~~~~G~~~~~~~-------~~-------~~p~~Gl~~d~~G~L~v~d  134 (239)
                      +.+.-+.-..++++++-.+.++.+|+.+|.|..|+.--+...|..       ..       ..-. ++++-+.-+|+.+.
T Consensus       320 qlifrg~~~sidcv~~In~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Wit-sla~i~~sdL~asG  398 (479)
T KOG0299|consen  320 QLIFRGGEGSIDCVAFINDEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWIT-SLAVIPGSDLLASG  398 (479)
T ss_pred             eeeeeCCCCCeeeEEEecccceeeccCCceEEEeeecccCceeEeeccccccCCcccccccccee-eeEecccCceEEec
Confidence            334444345788899988889999999999999874222111111       01       1344 67776766888888


Q ss_pred             CCCCeEEEc--cCC---ceEEecccCCccccccccEEEcCCCC-EEEEe
Q 026389          135 ADKGLLKVT--EEG---VTVLASHVNGSRINLADDLIAATDGS-IYFSV  177 (239)
Q Consensus       135 ~~~g~~~v~--~~g---~~~l~~~~~g~~~~~pn~l~vd~dG~-iy~td  177 (239)
                      +..|.+++.  .+|   ..++.+.   .--.+.|.+.+..+|. |+++-
T Consensus       399 S~~G~vrLW~i~~g~r~i~~l~~l---s~~GfVNsl~f~~sgk~ivagi  444 (479)
T KOG0299|consen  399 SWSGCVRLWKIEDGLRAINLLYSL---SLVGFVNSLAFSNSGKRIVAGI  444 (479)
T ss_pred             CCCCceEEEEecCCccccceeeec---ccccEEEEEEEccCCCEEEEec
Confidence            888988887  466   3333221   1124789999999996 65553

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=86.81  E-value=19  Score=30.91  Aligned_cols=100  Identities=13%  Similarity=0.180  Sum_probs=63.2

Q ss_pred             CcceEEEcCC-CCEE-EEeCCCeEEEEecC-C-cEE---EeeeccCcCccCeEEcCCCCEEEEeCCCCeEEEc--cCC-c
Q 026389           78 GPEDVCVDRN-GVLY-TATRDGWIKRLHKN-G-TWE---NWKLIGGDTLLGITTTQENEILVCDADKGLLKVT--EEG-V  147 (239)
Q Consensus        78 gPe~ia~d~~-G~ly-~~~~~g~I~~~~~~-G-~~~---~~~~~~~~p~~Gl~~d~~G~L~v~d~~~g~~~v~--~~g-~  147 (239)
                      .--.+||.|. |+++ ++..+..|..++.. + .+.   ++.+...+...-+|+.|.|+++++.+....+.+.  .++ .
T Consensus        16 r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~ef   95 (312)
T KOG0645|consen   16 RVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEF   95 (312)
T ss_pred             cEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEeecCCCce
Confidence            4556899986 8765 55577777667654 2 221   2222233433378899999988887777777776  355 5


Q ss_pred             eEEecccCCccccccccEEEcCCCCEEEEeCC
Q 026389          148 TVLASHVNGSRINLADDLIAATDGSIYFSVAS  179 (239)
Q Consensus       148 ~~l~~~~~g~~~~~pn~l~vd~dG~iy~td~~  179 (239)
                      +.+.. .+|. -+-.-.++..++|++..|-+.
T Consensus        96 ecv~~-lEGH-EnEVK~Vaws~sG~~LATCSR  125 (312)
T KOG0645|consen   96 ECVAT-LEGH-ENEVKCVAWSASGNYLATCSR  125 (312)
T ss_pred             eEEee-eecc-ccceeEEEEcCCCCEEEEeeC
Confidence            54432 3342 133557899999998888765

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=86.74  E-value=3.6  Score=36.49  Aligned_cols=63  Identities=13%  Similarity=0.277  Sum_probs=45.9

Q ss_pred             ceEEEcCCCCEE-EEeCCCeEEEEe--cCCcE-EEeee--ccCcCccCeEEcCCCCEEEEeCCCCeEEEc
Q 026389           80 EDVCVDRNGVLY-TATRDGWIKRLH--KNGTW-ENWKL--IGGDTLLGITTTQENEILVCDADKGLLKVT  143 (239)
Q Consensus        80 e~ia~d~~G~ly-~~~~~g~I~~~~--~~G~~-~~~~~--~~~~p~~Gl~~d~~G~L~v~d~~~g~~~v~  143 (239)
                      ..++++++|.+. +++..|+|.|+-  ++|+. ..|..  .+-+-. .|+|++++.++.|.+..+.+++.
T Consensus       177 Aalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~Iy-SL~Fs~ds~~L~~sS~TeTVHiF  245 (391)
T KOG2110|consen  177 AALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIY-SLSFSPDSQFLAASSNTETVHIF  245 (391)
T ss_pred             eEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEE-EEEECCCCCeEEEecCCCeEEEE
Confidence            358999999988 667899998865  47753 33332  133456 78999999988888887776654

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=86.49  E-value=6.9  Score=34.85  Aligned_cols=131  Identities=15%  Similarity=0.133  Sum_probs=77.0

Q ss_pred             ceEEEcC-CCCEEEEe-CCCeEEEEec-CCcEEEeeeccCcCccCeEEcCCCC-EEEEeCCCCeEEEc-cCC---ceEEe
Q 026389           80 EDVCVDR-NGVLYTAT-RDGWIKRLHK-NGTWENWKLIGGDTLLGITTTQENE-ILVCDADKGLLKVT-EEG---VTVLA  151 (239)
Q Consensus        80 e~ia~d~-~G~ly~~~-~~g~I~~~~~-~G~~~~~~~~~~~p~~Gl~~d~~G~-L~v~d~~~g~~~v~-~~g---~~~l~  151 (239)
                      .++-+.| .-.|..+. .|+.|+.+|. .++...-.-..-+++ +|+++|++- ..+++....++.+| ..=   +.+..
T Consensus       191 ~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~mRTN-~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~  269 (433)
T KOG0268|consen  191 SSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILTMRTN-TICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHK  269 (433)
T ss_pred             eEEecCCCcchheeeeccCCceEEEecccCCccceeeeecccc-ceecCccccceeeccccccceehhhhhhcccchhhc
Confidence            3445555 23455444 7889999985 333221123356899 999999774 55567777888887 221   22221


Q ss_pred             cccCCccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEE-Eec-CCCCCcceEEEcCCC
Q 026389          152 SHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETS-ILL-DSLFFANGVALSKDE  229 (239)
Q Consensus       152 ~~~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~-~~~-~~l~~pnGia~s~dg  229 (239)
                      +.     .+..-|+++.|-|.=++|.+..+               +=|||.++-  +..+ +.. .-+.+..+|.+|-|.
T Consensus       270 dh-----vsAV~dVdfsptG~EfvsgsyDk---------------sIRIf~~~~--~~SRdiYhtkRMq~V~~Vk~S~Ds  327 (433)
T KOG0268|consen  270 DH-----VSAVMDVDFSPTGQEFVSGSYDK---------------SIRIFPVNH--GHSRDIYHTKRMQHVFCVKYSMDS  327 (433)
T ss_pred             cc-----ceeEEEeccCCCcchhccccccc---------------eEEEeecCC--CcchhhhhHhhhheeeEEEEeccc
Confidence            11     13456889999998888765421               224554443  3222 222 236677889999998


Q ss_pred             CEEE
Q 026389          230 DYLV  233 (239)
Q Consensus       230 ~~ly  233 (239)
                      ++++
T Consensus       328 kyi~  331 (433)
T KOG0268|consen  328 KYII  331 (433)
T ss_pred             cEEE
Confidence            8664

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=86.19  E-value=9.1  Score=36.14  Aligned_cols=136  Identities=11%  Similarity=0.104  Sum_probs=70.1

Q ss_pred             eEEEcC-CCCEEEEeCCCeEEEEecCC-----cEEEeeecc--------CcCccCeEEcCCCCEEEEeCCCCeEEE-c-c
Q 026389           81 DVCVDR-NGVLYTATRDGWIKRLHKNG-----TWENWKLIG--------GDTLLGITTTQENEILVCDADKGLLKV-T-E  144 (239)
Q Consensus        81 ~ia~d~-~G~ly~~~~~g~I~~~~~~G-----~~~~~~~~~--------~~p~~Gl~~d~~G~L~v~d~~~g~~~v-~-~  144 (239)
                      .|.+.+ +|.|-+|..+|.|-.||+--     .+..-....        ..+. .+.|+.+|--+.+....|.+.+ | .
T Consensus       180 ~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svT-al~F~d~gL~~aVGts~G~v~iyDLR  258 (703)
T KOG2321|consen  180 VVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVT-ALKFRDDGLHVAVGTSTGSVLIYDLR  258 (703)
T ss_pred             eeeecCccceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcce-EEEecCCceeEEeeccCCcEEEEEcc
Confidence            344455 45556777889998888621     111101111        1244 6778766633333333454444 3 2


Q ss_pred             CCceEEe-cccCCccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecCCCCCcceE
Q 026389          145 EGVTVLA-SHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGV  223 (239)
Q Consensus       145 ~g~~~l~-~~~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~~l~~pnGi  223 (239)
                      .....+. +.....++.....+.-+..-.++-.|..                   .+-.||+.+|+.-..+....--|.+
T Consensus       259 a~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~Dk~-------------------~~kiWd~~~Gk~~asiEpt~~lND~  319 (703)
T KOG2321|consen  259 ASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSMDKR-------------------ILKIWDECTGKPMASIEPTSDLNDF  319 (703)
T ss_pred             cCCceeecccCCccceeeecccccCCCceEEecchH-------------------HhhhcccccCCceeeccccCCcCce
Confidence            2222222 2222334444444333222244444432                   2334788788777777666677888


Q ss_pred             EEcCCCCEEEEEe
Q 026389          224 ALSKDEDYLVVCE  236 (239)
Q Consensus       224 a~s~dg~~lyvad  236 (239)
                      |+-|++-.++++.
T Consensus       320 C~~p~sGm~f~An  332 (703)
T KOG2321|consen  320 CFVPGSGMFFTAN  332 (703)
T ss_pred             eeecCCceEEEec
Confidence            8888877666653

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=85.60  E-value=29  Score=31.83  Aligned_cols=131  Identities=17%  Similarity=0.153  Sum_probs=67.4

Q ss_pred             CCEE-EEeCCCeEEEEe-cCCcEEEeeeccCcCccCeEEcCCCCEEEEeCCCCeEEEcc--CC----ceEEecccCC--c
Q 026389           88 GVLY-TATRDGWIKRLH-KNGTWENWKLIGGDTLLGITTTQENEILVCDADKGLLKVTE--EG----VTVLASHVNG--S  157 (239)
Q Consensus        88 G~ly-~~~~~g~I~~~~-~~G~~~~~~~~~~~p~~Gl~~d~~G~L~v~d~~~g~~~v~~--~g----~~~l~~~~~g--~  157 (239)
                      ++.. ++-.|..+..|+ ++-....+....+.+- .+++- +..-||+.+..|.+.+..  ..    ...+++....  .
T Consensus       298 eR~vtVGgrDrT~rlwKi~eesqlifrg~~~sid-cv~~I-n~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~  375 (479)
T KOG0299|consen  298 ERCVTVGGRDRTVRLWKIPEESQLIFRGGEGSID-CVAFI-NDEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELD  375 (479)
T ss_pred             cceEEeccccceeEEEeccccceeeeeCCCCCee-eEEEe-cccceeeccCCceEEEeeecccCceeEeeccccccCCcc
Confidence            4444 333444333333 3322233444445565 66664 345566666667666542  11    1112221111  1


Q ss_pred             ccc---ccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEec--CCCCCcceEEEcCCCCEE
Q 026389          158 RIN---LADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILL--DSLFFANGVALSKDEDYL  232 (239)
Q Consensus       158 ~~~---~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~--~~l~~pnGia~s~dg~~l  232 (239)
                      +.+   +.+.+++-+.-++..+.+.               .+.=|||.+...-..+..+.  .-..+.|+|+|+.+|+++
T Consensus       376 ~~~~~~Witsla~i~~sdL~asGS~---------------~G~vrLW~i~~g~r~i~~l~~ls~~GfVNsl~f~~sgk~i  440 (479)
T KOG0299|consen  376 PVNGNFWITSLAVIPGSDLLASGSW---------------SGCVRLWKIEDGLRAINLLYSLSLVGFVNSLAFSNSGKRI  440 (479)
T ss_pred             ccccccceeeeEecccCceEEecCC---------------CCceEEEEecCCccccceeeecccccEEEEEEEccCCCEE
Confidence            222   5667777766666666543               12346677765433444432  224578999999999988


Q ss_pred             EEE
Q 026389          233 VVC  235 (239)
Q Consensus       233 yva  235 (239)
                      ++.
T Consensus       441 vag  443 (479)
T KOG0299|consen  441 VAG  443 (479)
T ss_pred             EEe
Confidence            764

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=85.35  E-value=4.2  Score=38.32  Aligned_cols=65  Identities=11%  Similarity=0.195  Sum_probs=39.2

Q ss_pred             CCCEEEEeCCCCeEEEc-cCC-ceEEecccCCcccc-------ccccEEEcCCCCEEEEeCCCCcCcccccccceeecCC
Q 026389          127 ENEILVCDADKGLLKVT-EEG-VTVLASHVNGSRIN-------LADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPH  197 (239)
Q Consensus       127 ~G~L~v~d~~~g~~~v~-~~g-~~~l~~~~~g~~~~-------~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~  197 (239)
                      +|.||+++....++.+| .+| ...-.+........       ...++++. +|+||++...                  
T Consensus        69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~-~~~v~v~t~d------------------  129 (527)
T TIGR03075        69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALY-DGKVFFGTLD------------------  129 (527)
T ss_pred             CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceEE-CCEEEEEcCC------------------
Confidence            67899998877788888 577 33222110000000       11344554 5688887643                  


Q ss_pred             ceEEEEeCCCCeE
Q 026389          198 GKLLKYDPSLNET  210 (239)
Q Consensus       198 g~v~~~d~~~~~~  210 (239)
                      |+|+.+|.++|++
T Consensus       130 g~l~ALDa~TGk~  142 (527)
T TIGR03075       130 ARLVALDAKTGKV  142 (527)
T ss_pred             CEEEEEECCCCCE
Confidence            7888888887775

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=85.06  E-value=34  Score=32.16  Aligned_cols=113  Identities=13%  Similarity=0.100  Sum_probs=66.3

Q ss_pred             EEeCCCeEEEEec-CCcEEEeeeccCcCccCeEEc----CCCCEEEEeCCCCeEEEc-cCC-ceEEecccCCcccccccc
Q 026389           92 TATRDGWIKRLHK-NGTWENWKLIGGDTLLGITTT----QENEILVCDADKGLLKVT-EEG-VTVLASHVNGSRINLADD  164 (239)
Q Consensus        92 ~~~~~g~I~~~~~-~G~~~~~~~~~~~p~~Gl~~d----~~G~L~v~d~~~g~~~v~-~~g-~~~l~~~~~g~~~~~pn~  164 (239)
                      .|...|.|+-++. .|+++.....+.++. ++...    ..|-+|-+++...+..++ ..+ ......  .+.  ..+..
T Consensus        75 lgt~~g~v~~ys~~~g~it~~~st~~h~~-~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~--~~~--~~~~s  149 (541)
T KOG4547|consen   75 LGTPQGSVLLYSVAGGEITAKLSTDKHYG-NVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWK--EQK--PLVSS  149 (541)
T ss_pred             eecCCccEEEEEecCCeEEEEEecCCCCC-cceeeecccccCceEecCCceeEEEEecccceeeeeec--cCC--Cccce
Confidence            3446677777774 456655445455554 44332    334577777766666666 344 222211  121  23568


Q ss_pred             EEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecCCCCCc-ceEEEcCC
Q 026389          165 LIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFA-NGVALSKD  228 (239)
Q Consensus       165 l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~~l~~p-nGia~s~d  228 (239)
                      +++.+||.+..+.+                   +.|-.||..++++..-.++...| +-++|..+
T Consensus       150 l~is~D~~~l~~as-------------------~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~  195 (541)
T KOG4547|consen  150 LCISPDGKILLTAS-------------------RQIKVLDIETKEVVITFTGHGSPVRTLSFTTL  195 (541)
T ss_pred             EEEcCCCCEEEecc-------------------ceEEEEEccCceEEEEecCCCcceEEEEEEEe
Confidence            99999998877754                   46777888777776666665544 44555444

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=85.02  E-value=19  Score=31.29  Aligned_cols=100  Identities=13%  Similarity=0.135  Sum_probs=56.6

Q ss_pred             CeEEcCCCCEEEEeCCCCeEEEc--cCC----ceEEe-----cccCCccc-cccccEEEcCC-CCEEEEeCCCCcCcccc
Q 026389          121 GITTTQENEILVCDADKGLLKVT--EEG----VTVLA-----SHVNGSRI-NLADDLIAATD-GSIYFSVASTKFGLHNW  187 (239)
Q Consensus       121 Gl~~d~~G~L~v~d~~~g~~~v~--~~g----~~~l~-----~~~~g~~~-~~pn~l~vd~d-G~iy~td~~~~~~~~~~  187 (239)
                      .+++-+++.=|++.+-.|.+.+.  .+.    .+..+     ....+..+ .-.|.|++.|- |++ +|.          
T Consensus       182 ~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tf-aTg----------  250 (323)
T KOG1036|consen  182 CVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTF-ATG----------  250 (323)
T ss_pred             EEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceE-Eec----------
Confidence            45555666677777777777664  111    11110     11122222 23577777775 333 332          


Q ss_pred             cccceeecCCceEEEEeCCCCeEEEecCCC-CCcceEEEcCCCCEEEEEeCC
Q 026389          188 GLDLLEAKPHGKLLKYDPSLNETSILLDSL-FFANGVALSKDEDYLVVCETF  238 (239)
Q Consensus       188 ~~~~~e~~~~g~v~~~d~~~~~~~~~~~~l-~~pnGia~s~dg~~lyvadt~  238 (239)
                             +..|-|.+||+.+++.-...... .....++|+.||..|-|+.+.
T Consensus       251 -------GsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~sy  295 (323)
T KOG1036|consen  251 -------GSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAIASSY  295 (323)
T ss_pred             -------CCCceEEEccCcchhhhhhccCCCCceEEEEeccCCCeEEEEech
Confidence                   23699999998765433323222 334568899999999888763

>COG4447 Uncharacterized protein related to plant photosystem II stability/assembly factor [General function prediction only]

Probab=84.47  E-value=8.4  Score=33.28  Aligned_cols=23  Identities=30%  Similarity=0.354  Sum_probs=18.2

Q ss_pred             CCCCCcceEEEcCCCCEEEEEeC
Q 026389          215 DSLFFANGVALSKDEDYLVVCET  237 (239)
Q Consensus       215 ~~l~~pnGia~s~dg~~lyvadt  237 (239)
                      .++..||.++++.|+.+|.|.+-
T Consensus       168 v~~~~~n~ia~s~dng~vaVg~r  190 (339)
T COG4447         168 VGLAVPNEIARSADNGYVAVGAR  190 (339)
T ss_pred             cchhhhhhhhhhccCCeEEEecC
Confidence            34668999999999998877653

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=84.43  E-value=13  Score=35.75  Aligned_cols=98  Identities=15%  Similarity=0.223  Sum_probs=63.2

Q ss_pred             eEEEcCCC-CEEEEeCCCeEEEEecCCc---EEEe---eeccCcC---ccCeEEcCCCCEEEEeCCCCeEEEcc--CCce
Q 026389           81 DVCVDRNG-VLYTATRDGWIKRLHKNGT---WENW---KLIGGDT---LLGITTTQENEILVCDADKGLLKVTE--EGVT  148 (239)
Q Consensus        81 ~ia~d~~G-~ly~~~~~g~I~~~~~~G~---~~~~---~~~~~~p---~~Gl~~d~~G~L~v~d~~~g~~~v~~--~g~~  148 (239)
                      ++.|.|.| .|..++.|..++.|.++-+   |...   ...+|..   + |..+.++++.+++..+.|-++...  +...
T Consensus       272 sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~-g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~~  350 (764)
T KOG1063|consen  272 SVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFW-GGLWSPNSNVIIAHGRTGGFHLWKTKDKTF  350 (764)
T ss_pred             EEEEccchhhheecccCcceEEEecCCccceEEEEEEeeccccccccee-eEEEcCCCCEEEEecccCcEEEEeccCccc
Confidence            57788888 6778888999988887544   4322   2233333   3 566779999999999888777653  3311


Q ss_pred             EEecccCCccccccccEEEcCCCCEEEEeCC
Q 026389          149 VLASHVNGSRINLADDLIAATDGSIYFSVAS  179 (239)
Q Consensus       149 ~l~~~~~g~~~~~pn~l~vd~dG~iy~td~~  179 (239)
                      ......-+.-+....|++.+|.|..+.|-+.
T Consensus       351 w~~~~~iSGH~~~V~dv~W~psGeflLsvs~  381 (764)
T KOG1063|consen  351 WTQEPVISGHVDGVKDVDWDPSGEFLLSVSL  381 (764)
T ss_pred             eeeccccccccccceeeeecCCCCEEEEecc
Confidence            1111111112334679999999998887543

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=84.20  E-value=6.1  Score=35.34  Aligned_cols=100  Identities=13%  Similarity=0.177  Sum_probs=61.1

Q ss_pred             cCcCccCeEEcCCCC-EEEEeCCCCeEEEc--cCC--ceEEecccCCccccccccEEEcCCC-CEEEEeCCCCcCccccc
Q 026389          115 GGDTLLGITTTQENE-ILVCDADKGLLKVT--EEG--VTVLASHVNGSRINLADDLIAATDG-SIYFSVASTKFGLHNWG  188 (239)
Q Consensus       115 ~~~p~~Gl~~d~~G~-L~v~d~~~g~~~v~--~~g--~~~l~~~~~g~~~~~pn~l~vd~dG-~iy~td~~~~~~~~~~~  188 (239)
                      +..+. .....+.|+ |++++..+....++  .+.  .+.+ +.....  ..++.+.+..+. .+.++|..         
T Consensus        62 ~~a~~-~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~-~~~~v~--~~~~ai~~~~~~~sv~v~dka---------  128 (390)
T KOG3914|consen   62 SLAPA-LVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLL-DVSCVP--KRPTAISFIREDTSVLVADKA---------  128 (390)
T ss_pred             hcccc-ccccCCCceEEEEEeCCCceEEEEEecCCCcceee-eEeecc--cCcceeeeeeccceEEEEeec---------
Confidence            34454 455556665 56667766654333  221  2222 211111  347778777765 67777754         


Q ss_pred             ccceeecCCceEEEEeCCC---CeEEEecCCCCCcceEEEcCCCCEEEEEe
Q 026389          189 LDLLEAKPHGKLLKYDPSL---NETSILLDSLFFANGVALSKDEDYLVVCE  236 (239)
Q Consensus       189 ~~~~e~~~~g~v~~~d~~~---~~~~~~~~~l~~pnGia~s~dg~~lyvad  236 (239)
                               |-++.||--.   +..+.++..+..-..|++++|++++..+|
T Consensus       129 ---------gD~~~~di~s~~~~~~~~~lGhvSml~dVavS~D~~~IitaD  170 (390)
T KOG3914|consen  129 ---------GDVYSFDILSADSGRCEPILGHVSMLLDVAVSPDDQFIITAD  170 (390)
T ss_pred             ---------CCceeeeeecccccCcchhhhhhhhhheeeecCCCCEEEEec
Confidence                     5566665332   56666777778888999999999998876

>COG4247 Phy 3-phytase (myo-inositol-hexaphosphate 3-phosphohydrolase) [Lipid metabolism]

Probab=84.10  E-value=26  Score=30.04  Aligned_cols=65  Identities=20%  Similarity=0.268  Sum_probs=39.6

Q ss_pred             CcceEEEcC---CCCEE--EEeCCCeEEEEec----CCcEE----EeeeccCcCccCeEEc-CCCCEEEEeCCCCeEEEc
Q 026389           78 GPEDVCVDR---NGVLY--TATRDGWIKRLHK----NGTWE----NWKLIGGDTLLGITTT-QENEILVCDADKGLLKVT  143 (239)
Q Consensus        78 gPe~ia~d~---~G~ly--~~~~~g~I~~~~~----~G~~~----~~~~~~~~p~~Gl~~d-~~G~L~v~d~~~g~~~v~  143 (239)
                      .+-|++...   .|..|  +...+|.|..+..    +|++.    +-........ ||..| .-|.||++...-+++++.
T Consensus       154 ~~YGl~lyrs~ktgd~yvfV~~~qG~~~Qy~l~d~gnGkv~~k~vR~fk~~tQTE-G~VaDdEtG~LYIaeEdvaiWK~~  232 (364)
T COG4247         154 SAYGLALYRSPKTGDYYVFVNRRQGDIAQYKLIDQGNGKVGTKLVRQFKIPTQTE-GMVADDETGFLYIAEEDVAIWKYE  232 (364)
T ss_pred             cceeeEEEecCCcCcEEEEEecCCCceeEEEEEecCCceEcceeeEeeecCCccc-ceeeccccceEEEeeccceeeecc
Confidence            344555543   35555  3446777766542    34321    1112234566 88887 668999999999999987

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=83.88  E-value=17  Score=35.05  Aligned_cols=66  Identities=15%  Similarity=0.225  Sum_probs=33.3

Q ss_pred             EEcCCCCEEEEeCCCeEEEEecCCcE-EEeeeccCcCccCeEEcCCCCEEEEeCCCCeEEEccCC--ceEEe
Q 026389           83 CVDRNGVLYTATRDGWIKRLHKNGTW-ENWKLIGGDTLLGITTTQENEILVCDADKGLLKVTEEG--VTVLA  151 (239)
Q Consensus        83 a~d~~G~ly~~~~~g~I~~~~~~G~~-~~~~~~~~~p~~Gl~~d~~G~L~v~d~~~g~~~v~~~g--~~~l~  151 (239)
                      ....++.+..++.|.++.+|.. |+. ..+......-. .++.-+++ .||+.+....+++..+|  .+++.
T Consensus       108 s~~~~~~~iSgSWD~TakvW~~-~~l~~~l~gH~asVW-Av~~l~e~-~~vTgsaDKtIklWk~~~~l~tf~  176 (745)
T KOG0301|consen  108 SIGEDGTLISGSWDSTAKVWRI-GELVYSLQGHTASVW-AVASLPEN-TYVTGSADKTIKLWKGGTLLKTFS  176 (745)
T ss_pred             ecCCcCceEecccccceEEecc-hhhhcccCCcchhee-eeeecCCC-cEEeccCcceeeeccCCchhhhhc
Confidence            3344556666665555544432 221 11111111223 34444665 88888777888887555  45543

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=83.49  E-value=7.3  Score=35.20  Aligned_cols=61  Identities=23%  Similarity=0.192  Sum_probs=40.7

Q ss_pred             ceEEEcCC-CCEEEEeCCCeEEEEecCCcE----EEeeeccCcCccCeEEcCCCCEEEEeCCCCeEE
Q 026389           80 EDVCVDRN-GVLYTATRDGWIKRLHKNGTW----ENWKLIGGDTLLGITTTQENEILVCDADKGLLK  141 (239)
Q Consensus        80 e~ia~d~~-G~ly~~~~~g~I~~~~~~G~~----~~~~~~~~~p~~Gl~~d~~G~L~v~d~~~g~~~  141 (239)
                      .++.|-++ +.+.++..|..|..|+..|+.    .++....+.-. .+.+|.+|+-.++..+.+-.+
T Consensus       179 ~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it-~~d~d~~~~~~iAas~d~~~r  244 (459)
T KOG0288|consen  179 HDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNIT-SIDFDSDNKHVIAASNDKNLR  244 (459)
T ss_pred             ceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcc-eeeecCCCceEEeecCCCcee
Confidence            34677765 777788888888888766643    23333334455 899999998877776665333

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=83.44  E-value=34  Score=33.54  Aligned_cols=94  Identities=15%  Similarity=0.205  Sum_probs=55.1

Q ss_pred             CcceEEEcCCCCEEEEeCCCeEEEEecC-Cc-EEEeeeccCcCccCeEEcCCCCEEEEeCCCCeEEEc--cCC--ceEEe
Q 026389           78 GPEDVCVDRNGVLYTATRDGWIKRLHKN-GT-WENWKLIGGDTLLGITTTQENEILVCDADKGLLKVT--EEG--VTVLA  151 (239)
Q Consensus        78 gPe~ia~d~~G~ly~~~~~g~I~~~~~~-G~-~~~~~~~~~~p~~Gl~~d~~G~L~v~d~~~g~~~v~--~~g--~~~l~  151 (239)
                      .-.++++..+..+..+-.++.|..|+.+ ++ +.++  +++..+ +..|-+.++.+|.....|-+.+.  ..+  ++.+.
T Consensus       375 dVRsl~vS~d~~~~~Sga~~SikiWn~~t~kciRTi--~~~y~l-~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~  451 (888)
T KOG0306|consen  375 DVRSLCVSSDSILLASGAGESIKIWNRDTLKCIRTI--TCGYIL-ASKFVPGDRYIVLGTKNGELQVFDLASASLVETIR  451 (888)
T ss_pred             heeEEEeecCceeeeecCCCcEEEEEccCcceeEEe--ccccEE-EEEecCCCceEEEeccCCceEEEEeehhhhhhhhh
Confidence            3446777766555554467788888765 33 3332  345666 77776666666666666655543  333  34332


Q ss_pred             cccCCccccccccEEEcCCCCEEEEeCC
Q 026389          152 SHVNGSRINLADDLIAATDGSIYFSVAS  179 (239)
Q Consensus       152 ~~~~g~~~~~pn~l~vd~dG~iy~td~~  179 (239)
                       .-+|    ....++..|||.=++|.+.
T Consensus       452 -AHdg----aIWsi~~~pD~~g~vT~sa  474 (888)
T KOG0306|consen  452 -AHDG----AIWSISLSPDNKGFVTGSA  474 (888)
T ss_pred             -cccc----ceeeeeecCCCCceEEecC
Confidence             1122    3567888899877777654

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=82.93  E-value=14  Score=36.15  Aligned_cols=90  Identities=10%  Similarity=0.197  Sum_probs=54.2

Q ss_pred             ceEEEcCCC-CEEEEeCCCeEEEEecC-CcEEEeeeccCcCccCeEEcCCCCEEEEeCC-CCeEEEc-cCC--ceEE---
Q 026389           80 EDVCVDRNG-VLYTATRDGWIKRLHKN-GTWENWKLIGGDTLLGITTTQENEILVCDAD-KGLLKVT-EEG--VTVL---  150 (239)
Q Consensus        80 e~ia~d~~G-~ly~~~~~g~I~~~~~~-G~~~~~~~~~~~p~~Gl~~d~~G~L~v~d~~-~g~~~v~-~~g--~~~l---  150 (239)
                      .+++|..+| .||.|...+-+.+|..+ ++ +.|.+..+.|.+++.+.+|+.+|..-.. +.+..+. .+-  ...+   
T Consensus       255 ~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~-kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi  333 (792)
T KOG1963|consen  255 NSLSFSSDGAYLLSGGREGVLVLWQLETGK-KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGI  333 (792)
T ss_pred             ceeEEecCCceEeecccceEEEEEeecCCC-cccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCc
Confidence            356777766 67788888888888753 34 5566666667669999999987765433 3333333 221  1111   


Q ss_pred             ecc---cCCccccccccEEEcCC
Q 026389          151 ASH---VNGSRINLADDLIAATD  170 (239)
Q Consensus       151 ~~~---~~g~~~~~pn~l~vd~d  170 (239)
                      ...   ....+-.++.++.+||.
T Consensus       334 ~~~~~~~k~~~~~l~t~~~idpr  356 (792)
T KOG1963|consen  334 KPPTPSTKTRPQSLTTGVSIDPR  356 (792)
T ss_pred             cCCCccccccccccceeEEEcCC
Confidence            111   11123456889999994

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=82.42  E-value=51  Score=32.11  Aligned_cols=64  Identities=8%  Similarity=0.112  Sum_probs=41.6

Q ss_pred             CcceEEEcCCCCEEEEeCCCeEEEEec-CCc-EEEeeeccCcCccCeEEcCCCCEEEEeCCCCeEEE
Q 026389           78 GPEDVCVDRNGVLYTATRDGWIKRLHK-NGT-WENWKLIGGDTLLGITTTQENEILVCDADKGLLKV  142 (239)
Q Consensus        78 gPe~ia~d~~G~ly~~~~~g~I~~~~~-~G~-~~~~~~~~~~p~~Gl~~d~~G~L~v~d~~~g~~~v  142 (239)
                      .-.++++-|||.=.+-..+.+++.+|+ +|. ..++.......+ -++...||+.+.+.+....+-+
T Consensus        14 ci~d~afkPDGsqL~lAAg~rlliyD~ndG~llqtLKgHKDtVy-cVAys~dGkrFASG~aDK~VI~   79 (1081)
T KOG1538|consen   14 CINDIAFKPDGTQLILAAGSRLLVYDTSDGTLLQPLKGHKDTVY-CVAYAKDGKRFASGSADKSVII   79 (1081)
T ss_pred             chheeEECCCCceEEEecCCEEEEEeCCCcccccccccccceEE-EEEEccCCceeccCCCceeEEE
Confidence            456789999997666667889999997 454 233322223345 6777788888776655444433

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=82.26  E-value=34  Score=33.37  Aligned_cols=91  Identities=11%  Similarity=0.165  Sum_probs=60.1

Q ss_pred             ceEEEcCCCCEEEEeCCCeEEEEecCC--cEEEeeeccCcCccCeEEcC-CCCEEEEeCCCCeEEEc--cCC-ceEEecc
Q 026389           80 EDVCVDRNGVLYTATRDGWIKRLHKNG--TWENWKLIGGDTLLGITTTQ-ENEILVCDADKGLLKVT--EEG-VTVLASH  153 (239)
Q Consensus        80 e~ia~d~~G~ly~~~~~g~I~~~~~~G--~~~~~~~~~~~p~~Gl~~d~-~G~L~v~d~~~g~~~v~--~~g-~~~l~~~  153 (239)
                      -+|.|..++.|..++.|.+|..|++.-  -..+|... ..-. .++|.| |.+-++...-.|-+++.  .+. +....+ 
T Consensus       373 LDlSWSKn~fLLSSSMDKTVRLWh~~~~~CL~~F~Hn-dfVT-cVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~D-  449 (712)
T KOG0283|consen  373 LDLSWSKNNFLLSSSMDKTVRLWHPGRKECLKVFSHN-DFVT-CVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWND-  449 (712)
T ss_pred             eecccccCCeeEeccccccEEeecCCCcceeeEEecC-CeeE-EEEecccCCCcEeecccccceEEeecCcCeeEeehh-
Confidence            468899999999999998888887643  24555443 2334 788885 44888887777888876  333 222211 


Q ss_pred             cCCccccccccEEEcCCCCE-EEEe
Q 026389          154 VNGSRINLADDLIAATDGSI-YFSV  177 (239)
Q Consensus       154 ~~g~~~~~pn~l~vd~dG~i-y~td  177 (239)
                      ..    .....+++.|||.. .++.
T Consensus       450 l~----~lITAvcy~PdGk~avIGt  470 (712)
T KOG0283|consen  450 LR----DLITAVCYSPDGKGAVIGT  470 (712)
T ss_pred             hh----hhheeEEeccCCceEEEEE
Confidence            11    24678899999954 4444

>COG4222 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=82.26  E-value=26  Score=31.78  Aligned_cols=28  Identities=18%  Similarity=0.318  Sum_probs=18.1

Q ss_pred             CcCCcceEEEcCCCC-EEEEeCCCeEEEE
Q 026389           75 ILNGPEDVCVDRNGV-LYTATRDGWIKRL  102 (239)
Q Consensus        75 ~~~gPe~ia~d~~G~-ly~~~~~g~I~~~  102 (239)
                      .+.+=+||.++++|. .|+-+.+|+--|.
T Consensus        67 p~~G~Sgi~~d~~~~~f~~lSDng~g~K~   95 (391)
T COG4222          67 PVGGFSGITYDPQGDGYWALSDNGRGSKL   95 (391)
T ss_pred             CCCceeeeEEccCCCeEEEEeCCCccccc
Confidence            366778899998775 5555555554443

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=81.94  E-value=11  Score=35.51  Aligned_cols=65  Identities=14%  Similarity=-0.009  Sum_probs=50.2

Q ss_pred             CcceEEEcCC-CCEEEEeCCCeEEEEecCCcEEEeeeccCcCccCeEEcCCCCEEEEeCCCCeEEEc
Q 026389           78 GPEDVCVDRN-GVLYTATRDGWIKRLHKNGTWENWKLIGGDTLLGITTTQENEILVCDADKGLLKVT  143 (239)
Q Consensus        78 gPe~ia~d~~-G~ly~~~~~g~I~~~~~~G~~~~~~~~~~~p~~Gl~~d~~G~L~v~d~~~g~~~v~  143 (239)
                      .+.+.+++++ ..+..|+.||.|..||.+-++..+....-.|. -+++.++|.+++.-..+|-+...
T Consensus       261 ~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~ka~~~P~-~iaWHp~gai~~V~s~qGelQ~F  326 (545)
T PF11768_consen  261 QVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLAKAEFIPT-LIAWHPDGAIFVVGSEQGELQCF  326 (545)
T ss_pred             cceEEecCcccceEEEEecCCeEEEEEcCCCeeeeeeecccce-EEEEcCCCcEEEEEcCCceEEEE
Confidence            5566777774 56778999999999998666666666667898 99999999877766666766654

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=81.72  E-value=30  Score=29.03  Aligned_cols=53  Identities=8%  Similarity=0.162  Sum_probs=31.9

Q ss_pred             CCCCEEEEeCCCCeEEEc--c-CC-ceEEecccCCccc--cccccEEEcCCCCEEEEeC
Q 026389          126 QENEILVCDADKGLLKVT--E-EG-VTVLASHVNGSRI--NLADDLIAATDGSIYFSVA  178 (239)
Q Consensus       126 ~~G~L~v~d~~~g~~~v~--~-~g-~~~l~~~~~g~~~--~~pn~l~vd~dG~iy~td~  178 (239)
                      .+|.+++..+....+++.  . +- +.++...+.+..+  .....++|||.|++.++..
T Consensus       192 wn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~  250 (350)
T KOG0641|consen  192 WNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGH  250 (350)
T ss_pred             ecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeecc
Confidence            455566665555555554  1 33 5555444433322  3467899999999999743

>KOG4328 consensus WD40 protein [Function unknown]

Probab=81.44  E-value=22  Score=32.66  Aligned_cols=134  Identities=12%  Similarity=0.081  Sum_probs=70.3

Q ss_pred             ceEEEcCCC--C-EEEEeCCCeEEEEecCCc------EEEeeeccCcCccCeEEcCCC--CEEEEeCCCCeEEEc--cCC
Q 026389           80 EDVCVDRNG--V-LYTATRDGWIKRLHKNGT------WENWKLIGGDTLLGITTTQEN--EILVCDADKGLLKVT--EEG  146 (239)
Q Consensus        80 e~ia~d~~G--~-ly~~~~~g~I~~~~~~G~------~~~~~~~~~~p~~Gl~~d~~G--~L~v~d~~~g~~~v~--~~g  146 (239)
                      .+++|.|.-  . +.+|+..|+|..|+.+++      +..+.. .+.|.++|.|.+.+  ++| +.++.|.++..  +.+
T Consensus       190 t~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~-hs~~Vs~l~F~P~n~s~i~-ssSyDGtiR~~D~~~~  267 (498)
T KOG4328|consen  190 TSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTP-HSGPVSGLKFSPANTSQIY-SSSYDGTIRLQDFEGN  267 (498)
T ss_pred             EEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEecc-CCccccceEecCCChhhee-eeccCceeeeeeecch
Confidence            457788732  3 447889999999987432      122222 23344389998776  455 44567777764  344


Q ss_pred             -ceEEecccCCccccccccEEEcCC-CCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeE--EEecCCCCCcce
Q 026389          147 -VTVLASHVNGSRINLADDLIAATD-GSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNET--SILLDSLFFANG  222 (239)
Q Consensus       147 -~~~l~~~~~g~~~~~pn~l~vd~d-G~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~--~~~~~~l~~pnG  222 (239)
                       .+.+...-..  -....++.+..+ +.+||.+.-                  |.+-.+|..++..  ..+.-.-...++
T Consensus       268 i~e~v~s~~~d--~~~fs~~d~~~e~~~vl~~~~~------------------G~f~~iD~R~~~s~~~~~~lh~kKI~s  327 (498)
T KOG4328|consen  268 ISEEVLSLDTD--NIWFSSLDFSAESRSVLFGDNV------------------GNFNVIDLRTDGSEYENLRLHKKKITS  327 (498)
T ss_pred             hhHHHhhcCcc--ceeeeeccccCCCccEEEeecc------------------cceEEEEeecCCccchhhhhhhcccce
Confidence             3433322111  112345555544 467776643                  4344455443322  222111125677


Q ss_pred             EEEcCCCCEEEEE
Q 026389          223 VALSKDEDYLVVC  235 (239)
Q Consensus       223 ia~s~dg~~lyva  235 (239)
                      |++.|-..+++.+
T Consensus       328 v~~NP~~p~~laT  340 (498)
T KOG4328|consen  328 VALNPVCPWFLAT  340 (498)
T ss_pred             eecCCCCchheee
Confidence            8887766655443

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=81.28  E-value=27  Score=30.83  Aligned_cols=41  Identities=12%  Similarity=0.137  Sum_probs=29.9

Q ss_pred             CceEEEEeCCCCeEEEecCCCCCcce-EEEcCCCCEEEEEeC
Q 026389          197 HGKLLKYDPSLNETSILLDSLFFANG-VALSKDEDYLVVCET  237 (239)
Q Consensus       197 ~g~v~~~d~~~~~~~~~~~~l~~pnG-ia~s~dg~~lyvadt  237 (239)
                      ..+|+.++.+++..+.+..+-...+. +.++++++.||+.-+
T Consensus       259 ~~hly~~~~~~~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~  300 (353)
T PF00930_consen  259 YRHLYLYDLDGGKPRQLTSGDWEVTSILGWDEDNNRIYFTAN  300 (353)
T ss_dssp             SEEEEEEETTSSEEEESS-SSS-EEEEEEEECTSSEEEEEES
T ss_pred             CcEEEEEcccccceeccccCceeecccceEcCCCCEEEEEec
Confidence            46899999998887766666555545 667899999987654

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=81.24  E-value=4  Score=40.22  Aligned_cols=63  Identities=17%  Similarity=0.247  Sum_probs=45.8

Q ss_pred             eEEEcCCCCEEEEeCCCeEEEEecCCc-EEEeeeccCcCccCeEEcCCCCEEEEeCCCCeEEEc
Q 026389           81 DVCVDRNGVLYTATRDGWIKRLHKNGT-WENWKLIGGDTLLGITTTQENEILVCDADKGLLKVT  143 (239)
Q Consensus        81 ~ia~d~~G~ly~~~~~g~I~~~~~~G~-~~~~~~~~~~p~~Gl~~d~~G~L~v~d~~~g~~~v~  143 (239)
                      ++|-+.+|.|.+|+.+|.|..|+..|. .++..+..|.|..||.+..||+-++|....=++.++
T Consensus       582 ~~aTt~~G~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~tyLlLi~  645 (794)
T PF08553_consen  582 CFATTEDGYIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATCKTYLLLID  645 (794)
T ss_pred             EEEecCCceEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEeecceEEEEE
Confidence            567778999999999999999997664 233344557777799999999866655444444443

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PF07494 Reg_prop: Two component regulator propeller; InterPro: IPR011110 A large group of two component regulator proteins appear to have the same N-terminal structure of 14 tandem repeats

Probab=81.20  E-value=2.2  Score=22.14  Aligned_cols=18  Identities=17%  Similarity=0.399  Sum_probs=14.5

Q ss_pred             cccccEEEcCCCCEEEEe
Q 026389          160 NLADDLIAATDGSIYFSV  177 (239)
Q Consensus       160 ~~pn~l~vd~dG~iy~td  177 (239)
                      +....+..|++|+||++.
T Consensus         5 n~I~~i~~D~~G~lWigT   22 (24)
T PF07494_consen    5 NNIYSIYEDSDGNLWIGT   22 (24)
T ss_dssp             SCEEEEEE-TTSCEEEEE
T ss_pred             CeEEEEEEcCCcCEEEEe
Confidence            457789999999999975

These repeats show homology to members of IPR002372 from INTERPRO and IPR001680 from INTERPRO indicating that they are likely to form a beta-propeller. This family has been built with artificially high cut-offs in order to avoid overlaps with other beta-propeller families. The fourteen repeats are likely to form two propellers; it is not clear if these structures are likely to recruit other proteins or interact with DNA.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=80.61  E-value=27  Score=33.36  Aligned_cols=129  Identities=17%  Similarity=0.217  Sum_probs=63.7

Q ss_pred             CCCEEE-EeCCC-----eEEEEecC-CcEEEeeeccC--cCccCeEEcCCCCEEEEeCCCC------eE-EEcc-CC-ce
Q 026389           87 NGVLYT-ATRDG-----WIKRLHKN-GTWENWKLIGG--DTLLGITTTQENEILVCDADKG------LL-KVTE-EG-VT  148 (239)
Q Consensus        87 ~G~ly~-~~~~g-----~I~~~~~~-G~~~~~~~~~~--~p~~Gl~~d~~G~L~v~d~~~g------~~-~v~~-~g-~~  148 (239)
                      +|.||+ |..+|     .|-+||+. .+|+.......  .-. |++. -+|+||++-...+      .+ ..|+ .+ -+
T Consensus       380 ~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~-gv~~-~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~  457 (571)
T KOG4441|consen  380 DGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGH-GVAV-LGGKLYIIGGGDGSSNCLNSVECYDPETNTWT  457 (571)
T ss_pred             CCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeee-EEEE-ECCEEEEEcCcCCCccccceEEEEcCCCCcee
Confidence            567774 33443     46777764 35554432211  122 4444 5789999865322      12 2343 22 22


Q ss_pred             EEecccCCccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecCCC--CCcceEEEc
Q 026389          149 VLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSL--FFANGVALS  226 (239)
Q Consensus       149 ~l~~~~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~~l--~~pnGia~s  226 (239)
                      .+..- .-  -+.-.++++. +|.||+--....            ....-.|.+|||.+.+.+.+..-.  ...-|++. 
T Consensus       458 ~~~~M-~~--~R~~~g~a~~-~~~iYvvGG~~~------------~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~~-  520 (571)
T KOG4441|consen  458 LIAPM-NT--RRSGFGVAVL-NGKIYVVGGFDG------------TSALSSVERYDPETNQWTMVAPMTSPRSAVGVVV-  520 (571)
T ss_pred             ecCCc-cc--ccccceEEEE-CCEEEEECCccC------------CCccceEEEEcCCCCceeEcccCccccccccEEE-
Confidence            22111 11  1122344443 778998754311            001235899999988887774221  12233443 


Q ss_pred             CCCCEEEEE
Q 026389          227 KDEDYLVVC  235 (239)
Q Consensus       227 ~dg~~lyva  235 (239)
                       .+..+|+.
T Consensus       521 -~~~~ly~v  528 (571)
T KOG4441|consen  521 -LGGKLYAV  528 (571)
T ss_pred             -ECCEEEEE
Confidence             35567775

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	239
2v91_A	302	Structure Of Strictosidine Synthase In Complex With		8e-06
2fp8_A	322	Structure Of Strictosidine Synthase, The Biosynthet		1e-05
2fpb_A	322	Structure Of Strictosidine Synthase, The Biosynthet		4e-04

>pdb|2V91|A Chain A, Structure Of Strictosidine Synthase In Complex With Strictosidine Length = 302

Iteration: 1
 Score = 47.4 bits (111), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 35/114 (30%), Positives = 54/114 (47%), Gaps = 3/114 (2%)
Query: 126 QENEILVCDADKGLLKVTEEG--VTVLASHVNGSRIN-LADDLIAATDGSIYFSVASTKF 182
           Q N++ + D    L  V  EG   T LA+ V+G     L    +    G +YF+  ST +
Sbjct: 81  QNNQLYIVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLY 140
Query: 183 GLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCE 236
                   +  +   G+L+KYDPS  ET++LL  L    G  +S D  +++V E
Sbjct: 141 DDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLKELHVPGGAEVSADSSFVLVAE 194

>pdb|2FP8|A Chain A, Structure Of Strictosidine Synthase, The Biosynthetic Entry To The Monoterpenoid Indole Alkaloid Family Length = 322

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/114 (30%), Positives = 54/114 (47%), Gaps = 3/114 (2%)
Query: 126 QENEILVCDADKGLLKVTEEG--VTVLASHVNGSRIN-LADDLIAATDGSIYFSVASTKF 182
           Q N++ + D    L  V  EG   T LA+ V+G     L    +    G +YF+  ST +
Sbjct: 90  QNNQLYIVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLY 149
Query: 183 GLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCE 236
                   +  +   G+L+KYDPS  ET++LL  L    G  +S D  +++V E
Sbjct: 150 DDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLKELHVPGGAEVSADSSFVLVAE 203

>pdb|2FPB|A Chain A, Structure Of Strictosidine Synthase, The Biosynthetic Entry To The Monoterpenoid Indole Alkaloid Family Length = 322

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 34/114 (29%), Positives = 50/114 (43%), Gaps = 3/114 (2%)
Query: 126 QENEILVCDADKGLLKVTEEG--VTVLASHVNGSRIN-LADDLIAATDGSIYFSVASTKF 182
           Q N+  + D    L  V  EG   T LA+ V+G     L    +    G +YF+  ST +
Sbjct: 90  QNNQXYIVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLY 149
Query: 183 GLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCE 236
                      +   G+L KYDPS  ET++L   L    G  +S D  +++V E
Sbjct: 150 DDRGVQQIXDTSDKTGRLXKYDPSTKETTLLXKELHVPGGAEVSADSSFVLVAE 203

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	239
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	2e-43
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	1e-17
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	2e-17
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	3e-14
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	4e-13
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	1e-11
2p4o_A	306	Hypothetical protein; putative lactonase, structur	1e-07
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	3e-06
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	4e-04
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	5e-06
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	3e-05
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	3e-04
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	7e-06
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	8e-05
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	4e-04
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	5e-04
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	6e-05
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	5e-04

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* Length = 322

 Score =  147 bits (373), Expect = 2e-43
 Identities = 45/204 (22%), Positives = 71/204 (34%), Gaps = 25/204 (12%)

Query: 61  TTSDIQSVTRLGEGILNGPEDVCVDRNG-VLYTATRDGWIKRLHKNG--------TWENW 111
             S       L E     P     D      YT+ +DG + +                 W
Sbjct: 3   ALSSPILKEILIEAPSYAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYW 62

Query: 112 KLIGGDTL------------LGIT-TTQENEILVCDADKGLLKVTEEG--VTVLASHVNG 156
                +                I+   Q N++ + D    L  V  EG   T LA+ V+G
Sbjct: 63  NKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVDCYYHLSVVGSEGGHATQLATSVDG 122

Query: 157 SRINLADDL-IAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLD 215
                   + +    G +YF+  ST +        +  +   G+L+KYDPS  ET++LL 
Sbjct: 123 VPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLK 182

Query: 216 SLFFANGVALSKDEDYLVVCETFK 239
            L    G  +S D  +++V E   
Sbjct: 183 ELHVPGGAEVSADSSFVLVAEFLS 206

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... Length = 314

 Score = 79.4 bits (196), Expect = 1e-17
 Identities = 33/191 (17%), Positives = 64/191 (33%), Gaps = 24/191 (12%)

Query: 67  SVTRLGEGILNGPEDVCVDRNGVLYTATRDGWI-----KRLHK----NGTWENWKLIGGD 117
             T++ E  + G E    D+NG  Y    +  +       + +     G          +
Sbjct: 9   LFTKVTED-IPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVN 67

Query: 118 TLLGIT-----TTQENEILVCDADKGLLKVTEEG--VTVLASHVNGSRINLADDLIAATD 170
              GI          N++ V D   GLL V  +G    +      G R+   +D     +
Sbjct: 68  GYGGIPAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYE 127

Query: 171 GSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDED 230
           G+++ +  +    +          +  G +  +     +   +  +  F NG+A+    D
Sbjct: 128 GNLWIT--APAGEVAPADYTRSMQEKFGSIYCFTTDG-QMIQVDTAFQFPNGIAVRHMND 184

Query: 231 ----YLVVCET 237
                L+V ET
Sbjct: 185 GRPYQLIVAET 195

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* Length = 355

 Score = 79.1 bits (194), Expect = 2e-17
 Identities = 37/242 (15%), Positives = 79/242 (32%), Gaps = 35/242 (14%)

Query: 30  LLAFTLQIFFFSPISPDLLLLPPASSASLIPTTSDIQSVTRLGEGILNGPEDVCVDRNGV 89
           L A TL     +             +     T  ++ +   + +GI NG ED+ +  NG+
Sbjct: 4   LTALTLLGMGLALFDRQKSSFQTRFNVHREVTPVELPNCNLV-KGIDNGSEDLEILPNGL 62

Query: 90  LYTATRDGWIKRLH----------------KNGTWENWKLIGGDT------LLGITTTQE 127
            + ++   +   +                 K       ++IG           GI+T  +
Sbjct: 63  AFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFID 122

Query: 128 NE----ILVCDADKG------LLKVTEEGVTVLASHVNGSRINLADDLIAATDGSIYFSV 177
           ++    +LV +               EE   +    +    +   +D++A      Y + 
Sbjct: 123 DDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATN 182

Query: 178 ASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCET 237
                  +    ++        +  Y P  N+  ++ +   FANG+ +S D  Y+ + E 
Sbjct: 183 DHYFIDPYLKSWEMHLGLAWSFVTYYSP--NDVRVVAEGFDFANGINISPDGKYVYIAEL 240

Query: 238 FK 239
             
Sbjct: 241 LA 242

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} Length = 305

 Score = 69.4 bits (170), Expect = 3e-14
 Identities = 38/203 (18%), Positives = 72/203 (35%), Gaps = 15/203 (7%)

Query: 41  SPISPDLLLLPPASSASLIPTTSDIQSVT---RLGEGILNGPEDVCVDRNGVLY-TATRD 96
            P   D   +  A+ A+ +     + ++       EG    P     +    L  +    
Sbjct: 14  VPADCDPPRITHAALAARLGDAR-LLTLYDQATWSEG----P--AWWEAQRTLVWSDLVG 66

Query: 97  GWIKRLHKNGTWENWKLIGGDTLLGITTTQENEILVCDADKGLLKVTEE--GVTVLASHV 154
             +    ++GT +        T  G     +  ++ C+  +  +  ++      +L    
Sbjct: 67  RRVLGWREDGTVDVLLDATAFTN-GNAVDAQQRLVHCEHGRRAITRSDADGQAHLLVGRY 125

Query: 155 NGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILL 214
            G R+N  +DLI A DG+I+F+         + G        H  + +  P  +     +
Sbjct: 126 AGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPL-QRM 184

Query: 215 DSLFFANGVALSKDEDYLVVCET 237
             L   NG+A S DE  L V +T
Sbjct: 185 ADLDHPNGLAFSPDEQTLYVSQT 207

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} Length = 296

 Score = 66.2 bits (162), Expect = 4e-13
 Identities = 33/186 (17%), Positives = 59/186 (31%), Gaps = 15/186 (8%)

Query: 56  ASLIPTTSDIQSVT---RLGEGILNGPEDVCVDRNGVLY-TATRDGWIKRLHKNGTWENW 111
             L P  ++ + +       EG    P  V V     +  +  R         +G     
Sbjct: 11  LDLFPAGAEARRLADGFTWTEG----P--VYVPARSAVIFSDVRQNRTWAWSDDGQLSPE 64

Query: 112 KLIGGDTLLGITTTQENEILVCD-ADKGLLKVTEEG--VTVLASHVNGSRINLADDLIAA 168
                    G    ++  ++ C    + L +  E G     +A    G ++N  +D+  A
Sbjct: 65  MHPSHHQN-GHCLNKQGHLIACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLA 123

Query: 169 TDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKD 228
            DGS++FS  +        G       P   + +  P     S  +      NG+A    
Sbjct: 124 PDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAPIRDRVKPNGLAFLPS 182

Query: 229 EDYLVV 234
            + LV 
Sbjct: 183 GNLLVS 188

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A Length = 333

 Score = 62.1 bits (151), Expect = 1e-11
 Identities = 42/215 (19%), Positives = 79/215 (36%), Gaps = 44/215 (20%)

Query: 45  PDLLLLPPASSASLIPTTSDIQSVT------RLGEGILNGPEDVCVDRNGVLYTATRDGW 98
           P L     ++SA  I + S++Q++T         +G+    E +  DR G L+       
Sbjct: 9   PTLFYSGKSNSAVPIISESELQTITAEPWLEISKKGLQ--LEGLNFDRQGQLF------L 60

Query: 99  I----KRLHK----NGTWENWKLIGGDTLLGITTTQENEILVCD-----ADKGLLKVTEE 145
           +      + K        +   +        I   ++  + VC      +  G+   TE 
Sbjct: 61  LDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATEN 120

Query: 146 G--VTVLASHVNGS-RINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLK 202
           G  +  +   ++ +  I+   D++  + G  YF+                   P G +  
Sbjct: 121 GDNLQDIIEDLSTAYCID---DMVFDSKGGFYFT-----------DFRGYSTNPLGGVYY 166

Query: 203 YDPSLNETSILLDSLFFANGVALSKDEDYLVVCET 237
             P     + ++ ++  ANG+ALS DE  L V ET
Sbjct: 167 VSPDFRTVTPIIQNISVANGIALSTDEKVLWVTET 201

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 Length = 306

 Score = 50.7 bits (121), Expect = 1e-07
 Identities = 31/195 (15%), Positives = 67/195 (34%), Gaps = 21/195 (10%)

Query: 50  LPPASSASLIPTTSDIQSVTRLGEGILNGPEDVCVDRNGVLY-TATRDGWIKRLHKNGTW 108
           LPP  +   I      + +T          E++    +G ++ T    G I  +  +G  
Sbjct: 8   LPPIYADKPIELA-PAKIITSFPVNTF--LENLASAPDGTIFVTNHEVGEIVSITPDGNQ 64

Query: 109 ENWKLIGGDTLLGITTTQENEILVCDADKG----LLKVTEEG-VTVLASHVNGSRINLAD 163
           +    + G  + G+  T   +++    +      +  V  +G V  L +  +   +N   
Sbjct: 65  QIHATVEG-KVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLN--- 120

Query: 164 DLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGV 223
            +   +D     + +        W +D+   +P G +    P L  ++       F    
Sbjct: 121 GITPLSDTQYLTADSYRGAI---WLIDV--VQPSGSIWLEHPMLARSN---SESVFPAAN 172

Query: 224 ALSKDEDYLVVCETF 238
            L +  ++L V  T 
Sbjct: 173 GLKRFGNFLYVSNTE 187

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} Length = 300

 Score = 46.2 bits (110), Expect = 3e-06
 Identities = 21/183 (11%), Positives = 56/183 (30%), Gaps = 27/183 (14%)

Query: 57  SLIPTTSDIQSVTRLGEGILNGPEDVCVDRNGVLY-TATRDGWIKRLHKNGTWENWKLIG 115
           S       ++          +GP  +    +G ++ T  +   I  L ++G  + +++  
Sbjct: 2   SEAWMNFYLEEFNLSIPD--SGPYGITSSEDGKVWFTQHKANKISSLDQSGRIKEFEVPT 59

Query: 116 GDT-LLGITTTQENEILVCDADKG-LLKVTEEG-VTVLASHVNGSRINLADDLIAATDGS 172
            D  ++ +  +   +I   +     + K++++G  T        S       +    +G 
Sbjct: 60  PDAKVMCLIVSSLGDIWFTENGANKIGKLSKKGGFTEYPLPQPDSGPY---GITEGLNGD 116

Query: 173 IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLF-FANGVALSKDEDY 231
           I+F+  +                   ++ K           L +   +   + L  D   
Sbjct: 117 IWFTQLNG-----------------DRIGKLTADGTIYEYDLPNKGSYPAFITLGSDNAL 159

Query: 232 LVV 234
              
Sbjct: 160 WFT 162

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} Length = 300

 Score = 39.6 bits (93), Expect = 4e-04
 Identities = 22/171 (12%), Positives = 52/171 (30%), Gaps = 26/171 (15%)

Query: 72  GEGILNGPEDVCVDRNGVLY-TATRDGWIKRLHKNGTWENWKLIGGDTL-LGITTTQENE 129
                +GP  +    NG ++ T      I +L  +GT   + L    +    IT   +N 
Sbjct: 99  LPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTADGTIYEYDLPNKGSYPAFITLGSDNA 158

Query: 130 ILVCDADKG-LLKVTEEG-VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNW 187
           +   +     + ++T  G +       N +       + +  DG+++F            
Sbjct: 159 LWFTENQNNSIGRITNTGKLEEYPLPTNAAA---PVGITSGNDGALWFV---------EI 206

Query: 188 GLDLLEAKPHGKLLKYDPSLNETSILL-DSLFFANGVALSKDEDYLVVCET 237
                      K+ +   +   +   +       + +   K+   +   E 
Sbjct: 207 M--------GNKIGRITTTGEISEYDIPTPNARPHAITAGKN-SEIWFTEW 248

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* Length = 299

 Score = 45.4 bits (108), Expect = 5e-06
 Identities = 25/171 (14%), Positives = 57/171 (33%), Gaps = 26/171 (15%)

Query: 72  GEGILNGPEDVCVDRNGVLY-TATRDGWIKRLHKNGTWENWKLIGGDTL-LGITTTQENE 129
                     + +  +G ++ T      I R+ K G  + + L   D+   GIT     +
Sbjct: 52  LPTPDAKVMCLTISSDGEVWFTENAANKIGRITKKGIIKEYTLPNPDSAPYGITEGPNGD 111

Query: 130 ILVCDADKG-LLKVTEEG-VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNW 187
           I   + +   + ++T++G +        GS  +    +   +D +++F+           
Sbjct: 112 IWFTEMNGNRIGRITDDGKIREYELPNKGSYPS---FITLGSDNALWFT---------EN 159

Query: 188 GLDLLEAKPHGKLLKYDPSLNETSILLDSLF-FANGVALSKDEDYLVVCET 237
                    +  + +   S + T   + +      G+    D D L   E 
Sbjct: 160 Q--------NNAIGRITESGDITEFKIPTPASGPVGITKGND-DALWFVEI 201

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* Length = 299

 Score = 43.1 bits (102), Expect = 3e-05
 Identities = 26/181 (14%), Positives = 51/181 (28%), Gaps = 27/181 (14%)

Query: 59  IPTTSDIQSVTRLGEGILNGPEDVCVDRNGVLY-TATRDGWIKRLHKNGTWENWKLIG-G 116
           I     I+  T       + P  +    NG ++ T      I R+  +G    ++L   G
Sbjct: 83  ITKKGIIKEYT--LPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITDDGKIREYELPNKG 140

Query: 117 DTLLGITTTQENEILVCDADKG-LLKVTEEG-VTVLASHVNGSRINLADDLIAATDGSIY 174
                IT   +N +   +     + ++TE G +T        S       +    D +++
Sbjct: 141 SYPSFITLGSDNALWFTENQNNAIGRITESGDITEFKIPTPASGPV---GITKGNDDALW 197

Query: 175 FSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILL-DSLFFANGVALSKDEDYLV 233
           F                       K+ +   S   T   +       + +      D   
Sbjct: 198 FVEIIG-----------------NKIGRITTSGEITEFKIPTPNARPHAITAGAGIDLWF 240

Query: 234 V 234
            
Sbjct: 241 T 241

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* Length = 299

 Score = 40.0 bits (94), Expect = 3e-04
 Identities = 20/166 (12%), Positives = 53/166 (31%), Gaps = 25/166 (15%)

Query: 74  GILNGPEDVCVDRNGVLY-TATRDGWIKRLHKNGTWENWKLIGGDT-LLGITTTQENEIL 131
               GP  + V   G ++ T  +   I  ++ +G    + L   D  ++ +T + + E+ 
Sbjct: 12  NQDTGPYGITVSDKGKVWITQHKANMISCINLDGKITEYPLPTPDAKVMCLTISSDGEVW 71

Query: 132 VCDADKG-LLKVTEEG-VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGL 189
             +     + ++T++G +         S       +    +G I+F+  +          
Sbjct: 72  FTENAANKIGRITKKGIIKEYTLPNPDSAPY---GITEGPNGDIWFTEMNG--------- 119

Query: 190 DLLEAKPHGKLLKYDPSLNETSILLDSLF-FANGVALSKDEDYLVV 234
                    ++ +           L +   + + + L  D      
Sbjct: 120 --------NRIGRITDDGKIREYELPNKGSYPSFITLGSDNALWFT 157

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A Length = 270

 Score = 44.9 bits (107), Expect = 7e-06
 Identities = 21/120 (17%), Positives = 49/120 (40%), Gaps = 9/120 (7%)

Query: 62  TSDIQSVTRLGEGILNGPEDVCVDRNGVLYTA-TRDGWIKRLHKNGTWENWKLIGGDTL- 119
            +  ++ T L    LN P+ V VD +G +Y   T +  + +L       N  ++    + 
Sbjct: 135 AAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESN--NQVVLPFTDIT 192

Query: 120 --LGITTTQENEILVCDADKG-LLKVTEEGVTVLASHVNGSRINLADDLIAATDGSIYFS 176
              GI   +   + V + +   ++K+     T   + +  + +N    +   +D ++Y +
Sbjct: 193 APWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTS--TVLPFTGLNTPLAVAVDSDRTVYVA 250

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A Length = 270

 Score = 41.8 bits (99), Expect = 8e-05
 Identities = 12/77 (15%), Positives = 25/77 (32%), Gaps = 6/77 (7%)

Query: 62  TSDIQSVTRLGEGILNGPEDVCVDRNGVLYTA-TRDGWIKRLHKNGTWENWKLIGGDTL- 119
            ++  +   L    +  P  + VD  G +Y        + +L    T     ++    L 
Sbjct: 177 EAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTS--TVLPFTGLN 234

Query: 120 --LGITTTQENEILVCD 134
             L +    +  + V D
Sbjct: 235 TPLAVAVDSDRTVYVAD 251

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A Length = 270

 Score = 39.5 bits (93), Expect = 4e-04
 Identities = 19/117 (16%), Positives = 38/117 (32%), Gaps = 4/117 (3%)

Query: 62  TSDIQSVTRLGEGILNGPEDVCVDRNGVLYTA-TRDGWIKRLHKNGTWENWKLIGGDTLL 120
            +     T L    L  P+ + VD  G +Y     +  +     +         G +   
Sbjct: 52  ATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQTVLPFDGLNYPE 111

Query: 121 GITTTQENEILVCDADKG-LLKVTEEGVTVLASHVNGSRINLADDLIAATDGSIYFS 176
           G+    +  + V D     ++K+     T       G  +N  D +     G++Y +
Sbjct: 112 GLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTG--LNDPDGVAVDNSGNVYVT 166

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A Length = 270

 Score = 39.5 bits (93), Expect = 5e-04
 Identities = 26/123 (21%), Positives = 43/123 (34%), Gaps = 10/123 (8%)

Query: 60  PTTSDIQSVTR-LGEGILNGPEDVCVDRNGVLYTATRD--GWIKRLHKNGTWENWKLIGG 116
           PT +  Q+V    G      P  V VD  G +Y  +    G + +L    T        G
Sbjct: 6   PTQASGQTVLPFTGIDFRLSPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNG 65

Query: 117 -DTLLGITTTQENEILVCDADKGLLKV--TEEGVTVLASHVNGSRINLADDLIAATDGSI 173
                G+       + V D +  ++ +       TVL        +N  + L   T G++
Sbjct: 66  LYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQTVLP----FDGLNYPEGLAVDTQGAV 121

Query: 174 YFS 176
           Y +
Sbjct: 122 YVA 124

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 Length = 286

 Score = 42.2 bits (100), Expect = 6e-05
 Identities = 21/85 (24%), Positives = 31/85 (36%), Gaps = 8/85 (9%)

Query: 68  VTRLGEGILNGPEDVCVDRNGVLY-TATRDGWIKRLHKNGTWENWKLIGGDTLL----GI 122
           V + G  IL  P  V VD  G +     +   +    +NG   +    G    L    G+
Sbjct: 112 VRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGNVLHK--FGCSKHLEFPNGV 169

Query: 123 TTTQENEILVCDADKGLLKV-TEEG 146
               + EI + D     +KV   EG
Sbjct: 170 VVNDKQEIFISDNRAHCVKVFNYEG 194

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 Length = 286

 Score = 39.5 bits (93), Expect = 5e-04
 Identities = 15/85 (17%), Positives = 28/85 (32%), Gaps = 9/85 (10%)

Query: 72  GEGILNGPEDVCVDRNGVLYTATRDGWIKRLHK---NGTWENWKLIGGDTL---LGITTT 125
            +  L  P  V V RN      T      ++      G +   +  G   L    G+T  
Sbjct: 72  RDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQYGQF--VRKFGATILQHPRGVTVD 129

Query: 126 QENEILVCDADKG-LLKVTEEGVTV 149
            +  I+V +     ++   + G  +
Sbjct: 130 NKGRIIVVECKVMRVIIFDQNGNVL 154

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	239
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	99.91
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	99.89
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.88
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.81
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.8
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	99.77
2p4o_A	306	Hypothetical protein; putative lactonase, structur	99.76
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.75
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	99.75
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	99.74
3v65_B	386	Low-density lipoprotein receptor-related protein;	99.74
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	99.73
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.72
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.72
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	99.72
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	99.72
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	99.71
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	99.71
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	99.7
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	99.7
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	99.69
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	99.69
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	99.68
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	99.68
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	99.67
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	99.67
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.67
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	99.67
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.66
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.66
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	99.66
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.66
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.66
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	99.65
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	99.65
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.64
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.64
3v65_B	386	Low-density lipoprotein receptor-related protein;	99.63
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.63
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	99.63
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.63
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	99.62
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	99.61
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	99.6
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	99.59
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	99.59
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.57
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.57
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	99.57
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.57
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.56
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.56
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.55
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.55
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	99.55
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.54
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.52
3kya_A	496	Putative phosphatase; structural genomics, joint c	99.52
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	99.5
3kya_A	496	Putative phosphatase; structural genomics, joint c	99.46
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.45
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	99.43
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.42
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	99.42
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.41
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.4
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.4
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	99.39
4a9v_A	592	PHOX; hydrolase, beta-propeller; 1.10A {Pseudomona	99.39
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.39
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	99.37
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	99.37
2p4o_A	306	Hypothetical protein; putative lactonase, structur	99.37
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.34
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	99.32
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.27
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.23
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.22
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	99.19
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.17
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.15
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	99.15
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.11
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	99.06
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.06
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	99.03
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.03
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.03
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	99.03
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.02
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.01
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	98.99
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	98.98
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	98.98
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	98.92
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	98.92
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	98.92
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.9
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	98.87
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	98.87
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	98.87
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	98.86
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	98.86
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	98.78
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	98.77
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	98.74
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	98.72
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	98.7
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	98.68
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	98.68
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	98.65
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.61
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	98.59
3zwu_A	592	Alkaline phosphatase PHOX; hydrolase, beta-propell	98.59
2ece_A	462	462AA long hypothetical selenium-binding protein;	98.58
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	98.56
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	98.56
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	98.56
3v9f_A	781	Two-component system sensor histidine kinase/RESP	98.55
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.55
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	98.54
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.54
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	98.53
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	98.53
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.49
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.48
3v9f_A	781	Two-component system sensor histidine kinase/RESP	98.48
4a2l_A	795	BT_4663, two-component system sensor histidine kin	98.46
4a2l_A	795	BT_4663, two-component system sensor histidine kin	98.46
3ow8_A	321	WD repeat-containing protein 61; structural genomi	98.45
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	98.44
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	98.38
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	98.37
3ow8_A	321	WD repeat-containing protein 61; structural genomi	98.36
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	98.36
3q6k_A	381	43.2 kDa salivary protein; beta propeller, binding	98.36
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	98.33
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	98.32
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	98.31
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	98.3
2ece_A	462	462AA long hypothetical selenium-binding protein;	98.28
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	98.27
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	98.25
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	98.24
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	98.24
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	98.24
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	98.23
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	98.23
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	98.22
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	98.21
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	98.2
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	98.19
3ott_A	758	Two-component system sensor histidine kinase; beta	98.19
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	98.19
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	98.18
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	98.18
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	98.17
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	98.17
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	98.16
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	98.16
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	98.16
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	98.15
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	98.14
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	98.14
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	98.14
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	98.13
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.11
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	98.1
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	98.1
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	98.1
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	98.1
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	98.09
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	98.08
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	98.06
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	98.06
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	98.06
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	98.05
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	98.04
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	98.04
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	98.03
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	98.03
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	98.02
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	98.01
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	98.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	97.99
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	97.98
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	97.98
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	97.96
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	97.96
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	97.95
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	97.94
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	97.93
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	97.92
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	97.9
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	97.9
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	97.89
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	97.89
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	97.89
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	97.89
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	97.88
1k32_A	1045	Tricorn protease; protein degradation, substrate g	97.88
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	97.88
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	97.88
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	97.86
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	97.85
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	97.85
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	97.84
3jrp_A	379	Fusion protein of protein transport protein SEC13	97.84
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	97.84
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	97.84
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	97.83
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	97.83
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	97.82
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	97.82
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	97.82
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	97.81
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	97.8
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	97.79
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	97.79
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	97.77
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	97.75
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	97.75
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	97.75
1k32_A	1045	Tricorn protease; protein degradation, substrate g	97.74
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	97.73
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	97.72
3ott_A	758	Two-component system sensor histidine kinase; beta	97.7
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	97.7
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	97.7
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	97.69
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	97.68
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	97.67
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	97.66
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	97.66
3q6k_A	381	43.2 kDa salivary protein; beta propeller, binding	97.65
3jrp_A	379	Fusion protein of protein transport protein SEC13	97.65
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	97.63
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	97.63
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	97.62
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	97.61
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	97.6
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	97.6
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	97.59
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	97.57
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	97.53
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	97.52
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	97.5
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	97.5
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	97.5
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	97.49
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	97.48
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	97.47
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	97.45
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	97.43
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	97.42
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	97.41
2pm7_B	297	Protein transport protein SEC13, protein transport	97.38
2pm7_B	297	Protein transport protein SEC13, protein transport	97.36
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	97.34
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	97.33
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	97.33
3jro_A	753	Fusion protein of protein transport protein SEC13	97.31
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	97.29
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	97.26
3zwu_A	592	Alkaline phosphatase PHOX; hydrolase, beta-propell	97.23
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	97.22
3b7f_A	394	Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop	97.21
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	97.21
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	97.18
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	97.18
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	97.14
3b7f_A	394	Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop	97.09
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	97.08
3jro_A	753	Fusion protein of protein transport protein SEC13	97.05
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	97.05
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	96.99
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	96.98
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	96.98
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	96.97
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	96.96
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	96.88
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	96.88
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	96.82
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	96.81
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	96.79
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	96.68
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	96.68
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	96.67
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	96.65
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	96.62
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	96.58
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	96.57
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	96.53
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	96.5
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	96.46
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	96.46
4a9v_A	592	PHOX; hydrolase, beta-propeller; 1.10A {Pseudomona	96.41
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	96.38
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	96.37
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	96.24
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	96.15
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	96.13
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	95.85
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	95.84
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	95.7
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	95.69
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	95.69
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	95.68
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	95.56
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	95.35
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	94.89
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	94.62
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	94.4
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	94.1
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	94.08
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	93.86
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	93.68
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	92.88
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	92.55
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	92.47
3a0f_A	763	Xyloglucanase; beta-propeller, hydrolase; 2.50A {G	91.37
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	91.29
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	90.59
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	90.41
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	90.38
2cn3_A	737	Xyloglucanase, beta-1,4-xyloglucan hydrolase; glyc	89.98
1sqj_A	789	OXG-RCBH, oligoxyloglucan reducing-END-specific ce	89.91
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	89.5
1sqj_A	789	OXG-RCBH, oligoxyloglucan reducing-END-specific ce	87.29
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	86.57
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	85.25
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	82.45
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	80.77

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=99.91  E-value=5.7e-24  Score=183.44  Aligned_cols=164  Identities=26%  Similarity=0.421  Sum_probs=135.8

Q ss_pred             CCcCCcceEEEcCCCC-EEEEeCCCeEEEEecCC-cEEEeee--------------------ccCcCccCeEEcC-CCCE
Q 026389           74 GILNGPEDVCVDRNGV-LYTATRDGWIKRLHKNG-TWENWKL--------------------IGGDTLLGITTTQ-ENEI  130 (239)
Q Consensus        74 g~~~gPe~ia~d~~G~-ly~~~~~g~I~~~~~~G-~~~~~~~--------------------~~~~p~~Gl~~d~-~G~L  130 (239)
                      |++..||++++|++|+ +|++..+++|+++++++ +++.+..                    ..++|. |+++++ +|+|
T Consensus        16 g~~~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~-gi~~~~~~g~l   94 (322)
T 2fp8_A           16 APSYAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTY-DISYNLQNNQL   94 (322)
T ss_dssp             CSSSCCCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEE-EEEEETTTTEE
T ss_pred             CccCCceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCc-eEEEcCCCCcE
Confidence            5578999999999998 88888999999999865 5665542                    135799 999996 8999


Q ss_pred             EEEeCCCCeEEEccC-C-ceEEecccCCccccccccEEEcC-CCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCC
Q 026389          131 LVCDADKGLLKVTEE-G-VTVLASHVNGSRINLADDLIAAT-DGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSL  207 (239)
Q Consensus       131 ~v~d~~~g~~~v~~~-g-~~~l~~~~~g~~~~~pn~l~vd~-dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~  207 (239)
                      ||+|...++++++.+ + .+.+.....+.++.+||++++|+ +|+|||+|...+|..+.+...+++..+.|+|++||+++
T Consensus        95 ~v~d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~  174 (322)
T 2fp8_A           95 YIVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPST  174 (322)
T ss_dssp             EEEETTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTT
T ss_pred             EEEECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCC
Confidence            999998888888854 5 67776666667788999999999 99999999876565555444555556679999999998


Q ss_pred             CeEEEecCCCCCcceEEEcCCCCEEEEEeCC
Q 026389          208 NETSILLDSLFFANGVALSKDEDYLVVCETF  238 (239)
Q Consensus       208 ~~~~~~~~~l~~pnGia~s~dg~~lyvadt~  238 (239)
                      ++++.+..++..||||++++||++|||+|+.
T Consensus       175 ~~~~~~~~~~~~p~gia~~~dg~~lyv~d~~  205 (322)
T 2fp8_A          175 KETTLLLKELHVPGGAEVSADSSFVLVAEFL  205 (322)
T ss_dssp             TEEEEEEEEESCCCEEEECTTSSEEEEEEGG
T ss_pred             CEEEEeccCCccCcceEECCCCCEEEEEeCC
Confidence            9888888888999999999999999999974

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=99.89  E-value=1.6e-22  Score=177.85  Aligned_cols=168  Identities=20%  Similarity=0.309  Sum_probs=127.9

Q ss_pred             ccceEeccCCcCCcceEEEcCCCCEEEEe-------------CCCeEEEEecC---CcEEEeeec-------cCcCccCe
Q 026389           66 QSVTRLGEGILNGPEDVCVDRNGVLYTAT-------------RDGWIKRLHKN---GTWENWKLI-------GGDTLLGI  122 (239)
Q Consensus        66 ~~~~~l~~g~~~gPe~ia~d~~G~ly~~~-------------~~g~I~~~~~~---G~~~~~~~~-------~~~p~~Gl  122 (239)
                      .+.+.|.. ...+||+|+++++|.+|+++             .+|+|+++|++   ++.+.+...       ..+|+ ||
T Consensus        40 ~~C~~i~~-~~~G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~Ph-Gi  117 (355)
T 3sre_A           40 PNCNLVKG-IDNGSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPH-GI  117 (355)
T ss_dssp             SCEEECTT-CCSCCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEE-EE
T ss_pred             CCCEEeCC-CCCCcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeee-ee
Confidence            35666643 25799999999999999886             68999999975   344444433       35999 99


Q ss_pred             EEcC--CC--CEEEEeCCCC-----eEEEccCC-ceEEecccCCccccccccEEEcCCCCEEEEeCCCCcCcccc-cccc
Q 026389          123 TTTQ--EN--EILVCDADKG-----LLKVTEEG-VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNW-GLDL  191 (239)
Q Consensus       123 ~~d~--~G--~L~v~d~~~g-----~~~v~~~g-~~~l~~~~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~-~~~~  191 (239)
                      .+..  +|  +|||+++..+     +++++.++ ...+...+++.++++|||++++++|++|+|+... |.-..+ ..+.
T Consensus       118 ~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~-ftd~~~~~~e~  196 (355)
T 3sre_A          118 STFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHY-FIDPYLKSWEM  196 (355)
T ss_dssp             EEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCS-CSSHHHHHHHH
T ss_pred             EEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcE-eCCcccccchh
Confidence            9854  45  6999998743     56666655 6666777888999999999999999999998751 211100 1122


Q ss_pred             eeecCCceEEEEeCCCCeEEEecCCCCCcceEEEcCCCCEEEEEeCC
Q 026389          192 LEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCETF  238 (239)
Q Consensus       192 ~e~~~~g~v~~~d~~~~~~~~~~~~l~~pnGia~s~dg~~lyvadt~  238 (239)
                      +++.+.|+||+||+.  +++++.+++.+||||||||||++|||+||.
T Consensus       197 ~~~~~~g~vyr~d~~--~~~~~~~~l~~pNGia~spDg~~lYvadt~  241 (355)
T 3sre_A          197 HLGLAWSFVTYYSPN--DVRVVAEGFDFANGINISPDGKYVYIAELL  241 (355)
T ss_dssp             HTTCCCEEEEEECTT--CCEEEEEEESSEEEEEECTTSSEEEEEEGG
T ss_pred             hccCCccEEEEEECC--eEEEeecCCcccCcceECCCCCEEEEEeCC
Confidence            234568999999984  678888999999999999999999999985

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.88  E-value=2.4e-21  Score=165.72  Aligned_cols=167  Identities=22%  Similarity=0.265  Sum_probs=133.1

Q ss_pred             cceEeccCCcCCcceEEEcCCCC-EEEEe-CCCeEEEEecCCcEEEeeeccCcCccCeEEcCCCCEEEEeCC-CCeEEEc
Q 026389           67 SVTRLGEGILNGPEDVCVDRNGV-LYTAT-RDGWIKRLHKNGTWENWKLIGGDTLLGITTTQENEILVCDAD-KGLLKVT  143 (239)
Q Consensus        67 ~~~~l~~g~~~gPe~ia~d~~G~-ly~~~-~~g~I~~~~~~G~~~~~~~~~~~p~~Gl~~d~~G~L~v~d~~-~g~~~v~  143 (239)
                      .++++..+ ..-+|+++|+++|+ ||+.+ .+++|++++++|+.+.+....+.+. |+++|++|+||+++.. .++.+++
T Consensus        36 ~~~~l~~~-~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~g~~~~~~~~~~~~~-gl~~d~dG~l~v~~~~~~~v~~~~  113 (305)
T 3dr2_A           36 RLLTLYDQ-ATWSEGPAWWEAQRTLVWSDLVGRRVLGWREDGTVDVLLDATAFTN-GNAVDAQQRLVHCEHGRRAITRSD  113 (305)
T ss_dssp             CCEEEECC-CSSEEEEEEEGGGTEEEEEETTTTEEEEEETTSCEEEEEESCSCEE-EEEECTTSCEEEEETTTTEEEEEC
T ss_pred             ceEEEecC-CcCccCCeEeCCCCEEEEEECCCCEEEEEeCCCCEEEEeCCCCccc-eeeECCCCCEEEEECCCCEEEEEC
Confidence            46777777 67899999999887 66555 8899999999888887777788899 9999999999999976 4566777


Q ss_pred             cCC-ceEEecccCCccccccccEEEcCCCCEEEEeCCCCcCccc-ccc-cceeecCCceEEEEeCCCCeEEEecCCCCCc
Q 026389          144 EEG-VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHN-WGL-DLLEAKPHGKLLKYDPSLNETSILLDSLFFA  220 (239)
Q Consensus       144 ~~g-~~~l~~~~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~-~~~-~~~e~~~~g~v~~~d~~~~~~~~~~~~l~~p  220 (239)
                      .+| .+.+.....+.+++.||+++++++|++||||..  |+... +.. ......+.+.|++||+++++++.+. ++..|
T Consensus       114 ~~g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~--~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~-~~~~p  190 (305)
T 3dr2_A          114 ADGQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPP--FGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA-DLDHP  190 (305)
T ss_dssp             TTSCEEEEECEETTEECSCCCCEEECTTSCEEEECCS--GGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE-EESSE
T ss_pred             CCCCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcC--CCccccccccccccccCCCeEEEEcCCCCcEEEEe-cCCCC
Confidence            668 777766667778889999999999999999975  33211 000 0011223578999999888887777 88899


Q ss_pred             ceEEEcCCCCEEEEEeCC
Q 026389          221 NGVALSKDEDYLVVCETF  238 (239)
Q Consensus       221 nGia~s~dg~~lyvadt~  238 (239)
                      ||++|++||++|||+++.
T Consensus       191 ~gl~~spdg~~lyv~~~~  208 (305)
T 3dr2_A          191 NGLAFSPDEQTLYVSQTP  208 (305)
T ss_dssp             EEEEECTTSSEEEEEECC
T ss_pred             cceEEcCCCCEEEEEecC
Confidence            999999999999999874

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.81  E-value=1.8e-18  Score=146.50  Aligned_cols=165  Identities=19%  Similarity=0.264  Sum_probs=125.8

Q ss_pred             ceEeccCCcCCcceEEEcCCCC-EEE-EeCCCeEEEEecCCcEEEeeeccCcCccCeEEcCCCCEEEEeCC-CCeEEEcc
Q 026389           68 VTRLGEGILNGPEDVCVDRNGV-LYT-ATRDGWIKRLHKNGTWENWKLIGGDTLLGITTTQENEILVCDAD-KGLLKVTE  144 (239)
Q Consensus        68 ~~~l~~g~~~gPe~ia~d~~G~-ly~-~~~~g~I~~~~~~G~~~~~~~~~~~p~~Gl~~d~~G~L~v~d~~-~g~~~v~~  144 (239)
                      .+.+..+ ...||+++|+++|+ ||+ +..+++|+++++++..+.+......|. +++++++|+||+++.. .++..++.
T Consensus        20 ~~~l~~~-~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~l~~~~dg~l~v~~~~~~~i~~~d~   97 (296)
T 3e5z_A           20 ARRLADG-FTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQLSPEMHPSHHQN-GHCLNKQGHLIACSHGLRRLERQRE   97 (296)
T ss_dssp             CEEEECC-CSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSCEEEEESSCSSEE-EEEECTTCCEEEEETTTTEEEEECS
T ss_pred             EEEEecC-CccccCCeEeCCCCEEEEEeCCCCEEEEEECCCCeEEEECCCCCcc-eeeECCCCcEEEEecCCCeEEEEcC
Confidence            4556655 68899999999997 665 458899999998766666666677899 9999999999999976 56677775


Q ss_pred             -CC-ceEEecccCCccccccccEEEcCCCCEEEEeCCCCcCccc-cc-ccceeecCCceEEEEeCCCCeEEEecCCCCCc
Q 026389          145 -EG-VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHN-WG-LDLLEAKPHGKLLKYDPSLNETSILLDSLFFA  220 (239)
Q Consensus       145 -~g-~~~l~~~~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~-~~-~~~~e~~~~g~v~~~d~~~~~~~~~~~~l~~p  220 (239)
                       +| .+.+.....+.++..|++++++++|++|+||+.  |+... +. .........++|++++++ ++++.+...+..|
T Consensus        98 ~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~--~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~~~  174 (296)
T 3e5z_A           98 PGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPT--YGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAPIRDRVKP  174 (296)
T ss_dssp             TTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECS--HHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEEECCCSSE
T ss_pred             CCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCc--cccccccccccccccCCCcEEEEECCC-CCEEEeecCCCCC
Confidence             77 666655455666788999999999999999874  22100 00 000011235799999998 7888888889999


Q ss_pred             ceEEEcCCCCEEEEEeCC
Q 026389          221 NGVALSKDEDYLVVCETF  238 (239)
Q Consensus       221 nGia~s~dg~~lyvadt~  238 (239)
                      +|++++|||+.+ ++++.
T Consensus       175 ~gi~~s~dg~~l-v~~~~  191 (296)
T 3e5z_A          175 NGLAFLPSGNLL-VSDTG  191 (296)
T ss_dssp             EEEEECTTSCEE-EEETT
T ss_pred             ccEEECCCCCEE-EEeCC
Confidence            999999999988 88874

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.80  E-value=1.8e-18  Score=147.36  Aligned_cols=161  Identities=12%  Similarity=0.109  Sum_probs=122.4

Q ss_pred             ceEeccCCcCCcceEEEcC-CCCEEEEe-CCCeEEEEecCC-cEEEeeeccCcCccCeEEcCCCCEEEEeCCCCeEEEc-
Q 026389           68 VTRLGEGILNGPEDVCVDR-NGVLYTAT-RDGWIKRLHKNG-TWENWKLIGGDTLLGITTTQENEILVCDADKGLLKVT-  143 (239)
Q Consensus        68 ~~~l~~g~~~gPe~ia~d~-~G~ly~~~-~~g~I~~~~~~G-~~~~~~~~~~~p~~Gl~~d~~G~L~v~d~~~g~~~v~-  143 (239)
                      ++.+......-+||.+|++ ++.||+.+ .+++|+++++++ +.+.+ .....+. +++++++|+||++. ..++++++ 
T Consensus         4 ~~~~~~~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~~~-~~~~~~~-~i~~~~dG~l~v~~-~~~l~~~d~   80 (297)
T 3g4e_A            4 IECVLPENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQRV-TMDAPVS-SVALRQSGGYVATI-GTKFCALNW   80 (297)
T ss_dssp             EEEEECCCCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEE-ECSSCEE-EEEEBTTSSEEEEE-TTEEEEEET
T ss_pred             EEEEeccCCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEEEE-eCCCceE-EEEECCCCCEEEEE-CCeEEEEEC
Confidence            3444444467899999998 67888776 789999999865 44443 4457888 99999999999997 46888888 


Q ss_pred             cCC-ceEEecccCCccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecCCCCCcce
Q 026389          144 EEG-VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANG  222 (239)
Q Consensus       144 ~~g-~~~l~~~~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~~l~~pnG  222 (239)
                      .+| .+.+.....+.+.+.+|++++|++|++|++++.....      ........++||+++++ +++..+..++..|||
T Consensus        81 ~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~------~~~~~~~~~~l~~~d~~-g~~~~~~~~~~~png  153 (297)
T 3g4e_A           81 KEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETA------PAVLERHQGALYSLFPD-HHVKKYFDQVDISNG  153 (297)
T ss_dssp             TTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSB------TTBCCTTCEEEEEECTT-SCEEEEEEEESBEEE
T ss_pred             CCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccc------cccccCCCcEEEEEECC-CCEEEEeeccccccc
Confidence            456 6666655455567889999999999999998542110      00112346899999997 667777788889999


Q ss_pred             EEEcCCCCEEEEEeCC
Q 026389          223 VALSKDEDYLVVCETF  238 (239)
Q Consensus       223 ia~s~dg~~lyvadt~  238 (239)
                      ++++|||++||++++.
T Consensus       154 i~~spdg~~lyv~~~~  169 (297)
T 3g4e_A          154 LDWSLDHKIFYYIDSL  169 (297)
T ss_dssp             EEECTTSCEEEEEEGG
T ss_pred             eEEcCCCCEEEEecCC
Confidence            9999999999999974

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=99.77  E-value=9.3e-18  Score=147.56  Aligned_cols=165  Identities=15%  Similarity=0.192  Sum_probs=120.5

Q ss_pred             cceEeccCCcCCcceEEEcCCCCEEEEeCCCeEEEEecCCcEEEeee------ccCcCccCeEEcCC----CCEEEEeCC
Q 026389           67 SVTRLGEGILNGPEDVCVDRNGVLYTATRDGWIKRLHKNGTWENWKL------IGGDTLLGITTTQE----NEILVCDAD  136 (239)
Q Consensus        67 ~~~~l~~g~~~gPe~ia~d~~G~ly~~~~~g~I~~~~~~G~~~~~~~------~~~~p~~Gl~~d~~----G~L~v~d~~  136 (239)
                      +++.+..+ +..|++|+++++|+||++...|+|++++.+|+ +.+..      ....|+ ||+++++    |+|||++..
T Consensus        20 ~~~~va~~-l~~P~~ia~~pdG~l~V~e~~g~I~~~d~~G~-~~~~~~~v~~~g~~g~~-gia~~pdf~~~g~lyv~~~~   96 (354)
T 3a9g_A           20 KISEVASD-LEVPWSIAPLGGGRYLVTERPGRLVLISPSGK-KLVASFDVANVGEAGLL-GLALHPEFPKKSWVYLYASY   96 (354)
T ss_dssp             EEEEEECS-CSCEEEEEEEETTEEEEEETTTEEEEECSSCE-EEEEECCCCCSTTCSEE-EEEECTTTTTSCEEEEEEEE
T ss_pred             EEEEEeCC-CCCCeEEEEcCCCeEEEEeCCCEEEEEeCCCc-eEeeccceeecCCCcee-eEEeCCCCCcCCEEEEEEec
Confidence            45777776 88999999999999999998899999998887 54432      235789 9999986    799999874


Q ss_pred             --------CCeEEEcc-CC------ceEEecccCCccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEE
Q 026389          137 --------KGLLKVTE-EG------VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLL  201 (239)
Q Consensus       137 --------~g~~~v~~-~g------~~~l~~~~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~  201 (239)
                              ..+++++. ++      .+++.........+++++|++++||+|||++.....  .....+  .....|+|+
T Consensus        97 ~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~--~~~~~d--~~~~~G~I~  172 (354)
T 3a9g_A           97 FAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAAD--PRLAQD--LSSLAGKIL  172 (354)
T ss_dssp             ECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTC--GGGGTC--TTCCSSEEE
T ss_pred             cCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCC--CccccC--CCCCCeEEE
Confidence                    45677762 21      233433333334567999999999999999765211  100000  122358999


Q ss_pred             EEeCCCC--------eEEEecCCCCCcceEEEcCCCCEEEEEeCC
Q 026389          202 KYDPSLN--------ETSILLDSLFFANGVALSKDEDYLVVCETF  238 (239)
Q Consensus       202 ~~d~~~~--------~~~~~~~~l~~pnGia~s~dg~~lyvadt~  238 (239)
                      |+++++.        ..+++..++.+|+||+|+++...||++|.+
T Consensus       173 ri~~dG~~p~~npf~~~~i~a~G~rnp~Gla~d~~~g~l~v~d~g  217 (354)
T 3a9g_A          173 RVDEEGRPPADNPFPNSPIWSYGHRNPQGIDWHRASGVMVATEHG  217 (354)
T ss_dssp             EECTTSCCCTTSSSTTCCEEEECCSCCCEEEECTTTCCEEEEECC
T ss_pred             EEcCCCCCCCCCCCCCCcEEEEccCCcceEEEeCCCCCEEEEecC
Confidence            9999854        356778899999999999954459999975

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=99.76  E-value=7.5e-17  Score=138.09  Aligned_cols=139  Identities=16%  Similarity=0.231  Sum_probs=112.1

Q ss_pred             CCcceEEEcCCCCEEEEe-CCCeEEEEecCCcEEEeeeccCcCccCeEEcCCCCEEEEeCCC-C--eEEEc-cCC-ceEE
Q 026389           77 NGPEDVCVDRNGVLYTAT-RDGWIKRLHKNGTWENWKLIGGDTLLGITTTQENEILVCDADK-G--LLKVT-EEG-VTVL  150 (239)
Q Consensus        77 ~gPe~ia~d~~G~ly~~~-~~g~I~~~~~~G~~~~~~~~~~~p~~Gl~~d~~G~L~v~d~~~-g--~~~v~-~~g-~~~l  150 (239)
                      ..||+++++++|+||+++ .+++|++++++|+...+....+.|. |++++++|+|||++... +  +++++ ++| .+.+
T Consensus        32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~~~~~~~~~~~p~-gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~~  110 (306)
T 2p4o_A           32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGNQQIHATVEGKVS-GLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETL  110 (306)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEECTTCCEEEEEECSSEEE-EEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEE
T ss_pred             CCcceEEECCCCCEEEEeCCCCeEEEECCCCceEEEEeCCCCce-eEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEEE
Confidence            689999999999999988 7899999999988766666678999 99999999999999653 3  67777 677 6655


Q ss_pred             ecccCCccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEe-----------cCCCCC
Q 026389          151 ASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSIL-----------LDSLFF  219 (239)
Q Consensus       151 ~~~~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~-----------~~~l~~  219 (239)
                      ....   ...+++++++.+++++|++|..                 .|+||++|+++++.++.           ...+..
T Consensus       111 ~~~~---~~~~~~g~~~~~~~~~~v~d~~-----------------~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~  170 (306)
T 2p4o_A          111 LTLP---DAIFLNGITPLSDTQYLTADSY-----------------RGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPA  170 (306)
T ss_dssp             EECT---TCSCEEEEEESSSSEEEEEETT-----------------TTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCS
T ss_pred             EeCC---CccccCcccccCCCcEEEEECC-----------------CCeEEEEeCCCCcEeEEEECCccccccccCCCCc
Confidence            5432   2457899999888899999964                 58999999986543322           245678


Q ss_pred             cceEEEcCCCCEEEEEeCC
Q 026389          220 ANGVALSKDEDYLVVCETF  238 (239)
Q Consensus       220 pnGia~s~dg~~lyvadt~  238 (239)
                      ||||  ++||++|||+|+.
T Consensus       171 pngi--s~dg~~lyv~d~~  187 (306)
T 2p4o_A          171 ANGL--KRFGNFLYVSNTE  187 (306)
T ss_dssp             EEEE--EEETTEEEEEETT
T ss_pred             CCCc--CcCCCEEEEEeCC
Confidence            9999  8999999999985

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.75  E-value=3.5e-17  Score=138.54  Aligned_cols=166  Identities=22%  Similarity=0.357  Sum_probs=123.6

Q ss_pred             ceEeccCCcCCcceEEEcCCCCEEEE--------eCCCeEEEEec-CCcEEEeee-----ccCcCccCeEEcCC-CCEEE
Q 026389           68 VTRLGEGILNGPEDVCVDRNGVLYTA--------TRDGWIKRLHK-NGTWENWKL-----IGGDTLLGITTTQE-NEILV  132 (239)
Q Consensus        68 ~~~l~~g~~~gPe~ia~d~~G~ly~~--------~~~g~I~~~~~-~G~~~~~~~-----~~~~p~~Gl~~d~~-G~L~v  132 (239)
                      .+.+..+ +..|++++|+++|++|++        ..+++|+++++ +|+.+.+..     ....|. +++++++ |+|||
T Consensus        10 ~~~~~~~-~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~-~i~~~~~~g~l~v   87 (314)
T 1pjx_A           10 FTKVTED-IPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPA-GCQCDRDANQLFV   87 (314)
T ss_dssp             CEEEECC-CTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEE-EEEECSSSSEEEE
T ss_pred             Hhhhhcc-CCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCc-eEEEecCCCcEEE
Confidence            3455555 789999999999999988        47889999995 677765543     346789 9999999 99999


Q ss_pred             EeCCCCeEEEccCC-ceEE-ecccCCccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeE
Q 026389          133 CDADKGLLKVTEEG-VTVL-ASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNET  210 (239)
Q Consensus       133 ~d~~~g~~~v~~~g-~~~l-~~~~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~  210 (239)
                      ++...++++++.+| .+.+ .....+.+...++++++|++|++|+++........++  ........++|+++|++ ++.
T Consensus        88 ~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~-g~~  164 (314)
T 1pjx_A           88 ADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADY--TRSMQEKFGSIYCFTTD-GQM  164 (314)
T ss_dssp             EETTTEEEEEETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCC--CBTTSSSCEEEEEECTT-SCE
T ss_pred             EECCCCEEEEeCCCCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccc--cccccCCCCeEEEECCC-CCE
Confidence            99877888888558 5555 4433344567799999999999999986521000000  00012235789999998 777


Q ss_pred             EEecCCCCCcceEEEc----CCCCEEEEEeCC
Q 026389          211 SILLDSLFFANGVALS----KDEDYLVVCETF  238 (239)
Q Consensus       211 ~~~~~~l~~pnGia~s----~dg~~lyvadt~  238 (239)
                      +.+...+..|++++++    +||+.||++++.
T Consensus       165 ~~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~  196 (314)
T 1pjx_A          165 IQVDTAFQFPNGIAVRHMNDGRPYQLIVAETP  196 (314)
T ss_dssp             EEEEEEESSEEEEEEEECTTSCEEEEEEEETT
T ss_pred             EEeccCCCCcceEEEecccCCCCCEEEEEECC
Confidence            7776777889999999    999999999863

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=99.75  E-value=7.5e-17  Score=141.32  Aligned_cols=142  Identities=14%  Similarity=0.185  Sum_probs=111.9

Q ss_pred             cCCcceEEEcC-CCCEEEEe-CCCeEEEEecCCc-EEEee-eccCcCccCeEEcC-CCCEEEEeCCCCeEEE-ccCC--c
Q 026389           76 LNGPEDVCVDR-NGVLYTAT-RDGWIKRLHKNGT-WENWK-LIGGDTLLGITTTQ-ENEILVCDADKGLLKV-TEEG--V  147 (239)
Q Consensus        76 ~~gPe~ia~d~-~G~ly~~~-~~g~I~~~~~~G~-~~~~~-~~~~~p~~Gl~~d~-~G~L~v~d~~~g~~~v-~~~g--~  147 (239)
                      +..|.+++||+ ++.||+++ ..++|++++.+|. .+.+. .....|. |+++|. +|+||++|...+.+.+ +.+|  .
T Consensus        72 ~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~-glavd~~~g~ly~~d~~~~~I~~~~~dG~~~  150 (349)
T 3v64_C           72 LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPG-GLAVDWVHDKLYWTDSGTSRIEVANLDGAHR  150 (349)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCC-EEEEETTTTEEEEEETTTTEEEEEETTSCSC
T ss_pred             CCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCcc-EEEEecCCCeEEEEcCCCCeEEEEcCCCCce
Confidence            67899999995 78999887 7899999998875 33333 3346799 999995 6789999988766655 4677  4


Q ss_pred             eEEecccCCccccccccEEEcC-CCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEec-CCCCCcceEEE
Q 026389          148 TVLASHVNGSRINLADDLIAAT-DGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILL-DSLFFANGVAL  225 (239)
Q Consensus       148 ~~l~~~~~g~~~~~pn~l~vd~-dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~-~~l~~pnGia~  225 (239)
                      +++..    ..+..|+++++|+ +|.|||+|...                .++|+++++++...+.+. .++..||||++
T Consensus       151 ~~l~~----~~l~~P~~iavdp~~g~ly~td~~~----------------~~~I~r~~~dG~~~~~~~~~~~~~PnGla~  210 (349)
T 3v64_C          151 KVLLW----QSLEKPRAIALHPMEGTIYWTDWGN----------------TPRIEASSMDGSGRRIIADTHLFWPNGLTI  210 (349)
T ss_dssp             EEEEC----TTCSCEEEEEEETTTTEEEEEECSS----------------SCEEEEEETTSCSCEESCCSSCSCEEEEEE
T ss_pred             EEEEe----CCCCCcceEEEecCcCeEEEeccCC----------------CCEEEEEeCCCCCcEEEEECCCCCcceEEE
Confidence            44432    2356799999998 57999999751                379999999876666654 57889999999


Q ss_pred             cCCCCEEEEEeCC
Q 026389          226 SKDEDYLVVCETF  238 (239)
Q Consensus       226 s~dg~~lyvadt~  238 (239)
                      +++++.|||+|+.
T Consensus       211 d~~~~~lY~aD~~  223 (349)
T 3v64_C          211 DYAGRRMYWVDAK  223 (349)
T ss_dssp             ETTTTEEEEEETT
T ss_pred             eCCCCEEEEEECC
Confidence            9999999999975

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=99.74  E-value=2.8e-17  Score=144.21  Aligned_cols=165  Identities=16%  Similarity=0.193  Sum_probs=119.5

Q ss_pred             cceEeccCCcCCcceEEEcCCCCEEEEeCCCeEEEEecCCcEEEeee------ccCcCccCeEEcCC----CCEEEEeCC
Q 026389           67 SVTRLGEGILNGPEDVCVDRNGVLYTATRDGWIKRLHKNGTWENWKL------IGGDTLLGITTTQE----NEILVCDAD  136 (239)
Q Consensus        67 ~~~~l~~g~~~gPe~ia~d~~G~ly~~~~~g~I~~~~~~G~~~~~~~------~~~~p~~Gl~~d~~----G~L~v~d~~  136 (239)
                      +++.+..+ +..|++++++++|+||++...|+|++++ +|+.+.+..      ....|+ ||+++++    +.|||++..
T Consensus        22 ~~~~va~~-l~~P~~ia~~pdG~l~V~e~~g~I~~i~-~g~~~~~~~~~v~~~g~~~p~-gia~~pdf~~~g~lYv~~~~   98 (352)
T 2ism_A           22 RVEEVVGG-LEVPWALAFLPDGGMLIAERPGRIRLFR-EGRLSTYAELSVYHRGESGLL-GLALHPRFPQEPYVYAYRTV   98 (352)
T ss_dssp             CEEEEECC-CSCEEEEEECTTSCEEEEETTTEEEEEE-TTEEEEEEECCCCCSTTCSEE-EEEECTTTTTSCEEEEEEEE
T ss_pred             EEEEEECC-CCCceEEEEcCCCeEEEEeCCCeEEEEE-CCCccEeecceEeecCCCCce-eEEECCCCCCCCEEEEEEec
Confidence            35677776 7899999999999999999889999998 776554432      246799 9999987    789999874


Q ss_pred             ------CCeEEEcc-CC----ceEEecccC--CccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEE
Q 026389          137 ------KGLLKVTE-EG----VTVLASHVN--GSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKY  203 (239)
Q Consensus       137 ------~g~~~v~~-~g----~~~l~~~~~--g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~  203 (239)
                            ..+++++. ++    .+++.....  ....++++++++++||.|||++.....  .....+  .....|+|+|+
T Consensus        99 ~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~--~~~~~d--~~~~~g~I~ri  174 (352)
T 2ism_A           99 AEGGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYE--RELAQD--LASLGGKILRL  174 (352)
T ss_dssp             CTTSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTC--GGGGGC--TTCSSSEEEEE
T ss_pred             CCCCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCC--CccccC--CCCCceEEEEE
Confidence                  45667763 32    233443332  234567899999999999999865211  000000  11245899999


Q ss_pred             eCCC-------------CeEEEecCCCCCcceEEEcCCCCEEEEEeCC
Q 026389          204 DPSL-------------NETSILLDSLFFANGVALSKDEDYLVVCETF  238 (239)
Q Consensus       204 d~~~-------------~~~~~~~~~l~~pnGia~s~dg~~lyvadt~  238 (239)
                      ++++             ...+++..++.+|+|++|++++..||++|.+
T Consensus       175 ~~dG~~p~~npf~~~~~~~~~i~a~G~rnp~g~a~d~~~g~l~v~d~g  222 (352)
T 2ism_A          175 TPEGEPAPGNPFLGRRGARPEVYSLGHRNPQGLAWHPKTGELFSSEHG  222 (352)
T ss_dssp             CTTSSBCTTCTTTTCTTSCTTEEEECCSEECCCEECTTTCCEEEEEEC
T ss_pred             cCCCCCCCCCcccCCCCCCccEEEEcCCCcccEEEECCCCCEEEEEcC
Confidence            9985             2456677889999999999955559999975

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=99.74  E-value=1e-16  Score=142.25  Aligned_cols=142  Identities=14%  Similarity=0.172  Sum_probs=112.3

Q ss_pred             cCCcceEEEcC-CCCEEEEe-CCCeEEEEecCCc-EEEee-eccCcCccCeEEcC-CCCEEEEeCCCCeEEEc-cCC--c
Q 026389           76 LNGPEDVCVDR-NGVLYTAT-RDGWIKRLHKNGT-WENWK-LIGGDTLLGITTTQ-ENEILVCDADKGLLKVT-EEG--V  147 (239)
Q Consensus        76 ~~gPe~ia~d~-~G~ly~~~-~~g~I~~~~~~G~-~~~~~-~~~~~p~~Gl~~d~-~G~L~v~d~~~g~~~v~-~~g--~  147 (239)
                      +..|++++||+ ++.||+++ ..++|++++.+|. .+.+. .....|. |+++|+ .|+||++|...+.+.+. .+|  .
T Consensus       115 ~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~-glavd~~~g~lY~~d~~~~~I~~~~~dg~~~  193 (386)
T 3v65_B          115 LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPG-GLAVDWVHDKLYWTDSGTSRIEVANLDGAHR  193 (386)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCC-CEEEETTTTEEEEEETTTTEEEECBTTSCSC
T ss_pred             CCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCcc-EEEEEeCCCeEEEEcCCCCeEEEEeCCCCce
Confidence            67899999996 78999887 7889999998875 44433 3346899 999995 67899999987766664 666  4


Q ss_pred             eEEecccCCccccccccEEEcCC-CCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEec-CCCCCcceEEE
Q 026389          148 TVLASHVNGSRINLADDLIAATD-GSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILL-DSLFFANGVAL  225 (239)
Q Consensus       148 ~~l~~~~~g~~~~~pn~l~vd~d-G~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~-~~l~~pnGia~  225 (239)
                      +.+..    ..+..|+++++|++ |.|||+|...                .++|+++++++...+.+. .++..||||++
T Consensus       194 ~~l~~----~~l~~P~giavdp~~g~ly~td~~~----------------~~~I~r~~~dG~~~~~~~~~~~~~PnGlav  253 (386)
T 3v65_B          194 KVLLW----QSLEKPRAIALHPMEGTIYWTDWGN----------------TPRIEASSMDGSGRRIIADTHLFWPNGLTI  253 (386)
T ss_dssp             EEEEC----SSCSCEEEEEEETTTTEEEEEECSS----------------SCEEEEEETTSCSCEEEECSSCSCEEEEEE
T ss_pred             EEeec----CCCCCCcEEEEEcCCCeEEEeccCC----------------CCEEEEEeCCCCCcEEEEECCCCCeeeEEE
Confidence            44432    23567999999975 6999999651                379999999876655554 67889999999


Q ss_pred             cCCCCEEEEEeCC
Q 026389          226 SKDEDYLVVCETF  238 (239)
Q Consensus       226 s~dg~~lyvadt~  238 (239)
                      +++++.|||+|+.
T Consensus       254 d~~~~~lY~aD~~  266 (386)
T 3v65_B          254 DYAGRRMYWVDAK  266 (386)
T ss_dssp             EGGGTEEEEEETT
T ss_pred             eCCCCEEEEEECC
Confidence            9999999999985

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=99.73  E-value=7e-17  Score=145.60  Aligned_cols=140  Identities=16%  Similarity=0.163  Sum_probs=112.0

Q ss_pred             CcCCcceEEEcCC---CCEEEEeCCCeEEEEec-CCcEEEeeeccCcCccCeEEcCCCCEEEEeCC-----CCeEEEccC
Q 026389           75 ILNGPEDVCVDRN---GVLYTATRDGWIKRLHK-NGTWENWKLIGGDTLLGITTTQENEILVCDAD-----KGLLKVTEE  145 (239)
Q Consensus        75 ~~~gPe~ia~d~~---G~ly~~~~~g~I~~~~~-~G~~~~~~~~~~~p~~Gl~~d~~G~L~v~d~~-----~g~~~v~~~  145 (239)
                      ++..|.+|++|++   |+||+++..++|+++++ +|++..+......|. |++++++|+|||+|..     .+++.++.+
T Consensus       137 ~~~~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~~~~~~P~-giavd~dG~lyVad~~~~~~~~gv~~~~~~  215 (433)
T 4hw6_A          137 AFDNIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKTTNIGQCA-DVNFTLNGDMVVVDDQSSDTNTGIYLFTRA  215 (433)
T ss_dssp             CCSCCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEECCCCSCEE-EEEECTTCCEEEEECCSCTTSEEEEEECGG
T ss_pred             ccCCCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEeecCCCCcc-EEEECCCCCEEEEcCCCCcccceEEEEECC
Confidence            5789999999984   99999986699999998 778877776777899 9999999999999974     246666643


Q ss_pred             C-c---eEEecccCCccccccccEEEcC-CCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeE-EEec--CCC
Q 026389          146 G-V---TVLASHVNGSRINLADDLIAAT-DGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNET-SILL--DSL  217 (239)
Q Consensus       146 g-~---~~l~~~~~g~~~~~pn~l~vd~-dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~-~~~~--~~l  217 (239)
                      + .   ..+.      .+..|+++++|+ +|+|||+|..                 +++|++||++++++ +.+.  ...
T Consensus       216 ~~~~~~~~~~------~~~~P~giavd~~~G~lyv~d~~-----------------~~~V~~~d~~~g~~~~~~~~~~~~  272 (433)
T 4hw6_A          216 SGFTERLSLC------NARGAKTCAVHPQNGKIYYTRYH-----------------HAMISSYDPATGTLTEEEVMMDTK  272 (433)
T ss_dssp             GTTCCEEEEE------ECSSBCCCEECTTTCCEEECBTT-----------------CSEEEEECTTTCCEEEEEEECSCC
T ss_pred             CCeecccccc------ccCCCCEEEEeCCCCeEEEEECC-----------------CCEEEEEECCCCeEEEEEeccCCC
Confidence            3 2   1221      467899999999 7999999975                 58999999987776 4433  223


Q ss_pred             CCcceEEEcCCCCEEEEEeCC
Q 026389          218 FFANGVALSKDEDYLVVCETF  238 (239)
Q Consensus       218 ~~pnGia~s~dg~~lyvadt~  238 (239)
                      ..+++|++++||++|||+|+.
T Consensus       273 ~~~~~ia~dpdG~~LYvad~~  293 (433)
T 4hw6_A          273 GSNFHIVWHPTGDWAYIIYNG  293 (433)
T ss_dssp             SSCEEEEECTTSSEEEEEETT
T ss_pred             CCcccEEEeCCCCEEEEEeCC
Confidence            456789999999999999975

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.72  E-value=3.3e-16  Score=135.14  Aligned_cols=166  Identities=10%  Similarity=0.151  Sum_probs=115.7

Q ss_pred             eccCCcCCcceEEEcCCCCEEEEe-CCCeEEEEecCCc---EEEeee---------ccCcCccCeEEcC-CCCEEEEeC-
Q 026389           71 LGEGILNGPEDVCVDRNGVLYTAT-RDGWIKRLHKNGT---WENWKL---------IGGDTLLGITTTQ-ENEILVCDA-  135 (239)
Q Consensus        71 l~~g~~~gPe~ia~d~~G~ly~~~-~~g~I~~~~~~G~---~~~~~~---------~~~~p~~Gl~~d~-~G~L~v~d~-  135 (239)
                      ...+.+..|.+|++|++|+||+++ .+++|.+++.+|+   ...+..         ....|. |+++++ +|+|||+|. 
T Consensus        85 ~~~~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~-~ia~~~~~g~lyv~d~~  163 (329)
T 3fvz_A           85 SGKNLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPT-DVAVEPSTGAVFVSDGY  163 (329)
T ss_dssp             ECTTTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEE-EEEECTTTCCEEEEECS
T ss_pred             cCCCccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCc-EEEEeCCCCeEEEEeCC
Confidence            344557799999999999999887 6799999999886   233321         123699 999998 899999996 


Q ss_pred             CCCeE-EEccCC--ceEEecccCC-----ccccccccEEEcCC-CCEEEEeCCCC----cCcc--ccccc----------
Q 026389          136 DKGLL-KVTEEG--VTVLASHVNG-----SRINLADDLIAATD-GSIYFSVASTK----FGLH--NWGLD----------  190 (239)
Q Consensus       136 ~~g~~-~v~~~g--~~~l~~~~~g-----~~~~~pn~l~vd~d-G~iy~td~~~~----~~~~--~~~~~----------  190 (239)
                      ..+.+ .++.+|  ...+.....+     ..+..|++++++++ |++|++|....    |...  .+...          
T Consensus       164 ~~~~I~~~~~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~  243 (329)
T 3fvz_A          164 CNSRIVQFSPSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNV  243 (329)
T ss_dssp             SCCEEEEECTTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCE
T ss_pred             CCCeEEEEcCCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCc
Confidence            45554 556777  4444322221     35778999999998 89999997642    2221  00000          


Q ss_pred             -----------------ceeecCCceEEEEeCCCCeEEEec----CCCCCcceEEEcCCCCEEEEEeCC
Q 026389          191 -----------------LLEAKPHGKLLKYDPSLNETSILL----DSLFFANGVALSKDEDYLVVCETF  238 (239)
Q Consensus       191 -----------------~~e~~~~g~v~~~d~~~~~~~~~~----~~l~~pnGia~s~dg~~lyvadt~  238 (239)
                                       .+......+++++|..++++....    ..+..|+||++++|| .|||+|+.
T Consensus       244 ~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG-~lyvad~~  311 (329)
T 3fvz_A          244 FAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDG-TVYIGDAH  311 (329)
T ss_dssp             EEEEEETTEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTS-EEEEEESS
T ss_pred             ceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCC-CEEEEECC
Confidence                             001122347888887777765553    457889999999999 79999974

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.72  E-value=2.5e-16  Score=135.94  Aligned_cols=147  Identities=14%  Similarity=0.129  Sum_probs=108.6

Q ss_pred             CcCCcceEEEcCCCCEEEEeCCC-------------------------eEEEEecC-CcEEEeee--ccCcCccCeEEcC
Q 026389           75 ILNGPEDVCVDRNGVLYTATRDG-------------------------WIKRLHKN-GTWENWKL--IGGDTLLGITTTQ  126 (239)
Q Consensus        75 ~~~gPe~ia~d~~G~ly~~~~~g-------------------------~I~~~~~~-G~~~~~~~--~~~~p~~Gl~~d~  126 (239)
                      ++..|.+|++|++|++|+++..+                         +|+++|.+ |++.....  ....|. |+++++
T Consensus        22 ~l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~-gia~d~  100 (329)
T 3fvz_A           22 LPGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPH-GLSIDT  100 (329)
T ss_dssp             CCSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEE-EEEECT
T ss_pred             ecCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCce-EEEECC
Confidence            46789999999999999887433                         69999984 77643222  234799 999999


Q ss_pred             CCCEEEEeCCCCeEE-EccCC-c---eEEecc----cCCccccccccEEEcC-CCCEEEEeCCCCcCcccccccceeecC
Q 026389          127 ENEILVCDADKGLLK-VTEEG-V---TVLASH----VNGSRINLADDLIAAT-DGSIYFSVASTKFGLHNWGLDLLEAKP  196 (239)
Q Consensus       127 ~G~L~v~d~~~g~~~-v~~~g-~---~~l~~~----~~g~~~~~pn~l~vd~-dG~iy~td~~~~~~~~~~~~~~~e~~~  196 (239)
                      +|+|||+|...+.++ ++.+| .   ..+...    .....+..|+++++++ +|++|++|..                .
T Consensus       101 ~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~----------------~  164 (329)
T 3fvz_A          101 DGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGY----------------C  164 (329)
T ss_dssp             TSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECS----------------S
T ss_pred             CCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCC----------------C
Confidence            999999998766554 55666 3   222211    0123567899999999 8999999962                1


Q ss_pred             CceEEEEeCCCCeEEEec----------CCCCCcceEEEcCCCCEEEEEeCC
Q 026389          197 HGKLLKYDPSLNETSILL----------DSLFFANGVALSKDEDYLVVCETF  238 (239)
Q Consensus       197 ~g~v~~~d~~~~~~~~~~----------~~l~~pnGia~s~dg~~lyvadt~  238 (239)
                      +++|.+||+++..+..+.          ..+..|+||++++|+..|||+|+.
T Consensus       165 ~~~I~~~~~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~  216 (329)
T 3fvz_A          165 NSRIVQFSPSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRE  216 (329)
T ss_dssp             CCEEEEECTTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETT
T ss_pred             CCeEEEEcCCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECC
Confidence            479999998755555443          235679999999997789999974

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=99.72  E-value=2.9e-16  Score=135.61  Aligned_cols=142  Identities=13%  Similarity=0.135  Sum_probs=108.6

Q ss_pred             cCCcceEEEcC-CCCEEEEe-CCCeEEEEecCC----c-EEEeee-ccCcCccCeEEcC-CCCEEEEeCCCCeEEE-ccC
Q 026389           76 LNGPEDVCVDR-NGVLYTAT-RDGWIKRLHKNG----T-WENWKL-IGGDTLLGITTTQ-ENEILVCDADKGLLKV-TEE  145 (239)
Q Consensus        76 ~~gPe~ia~d~-~G~ly~~~-~~g~I~~~~~~G----~-~~~~~~-~~~~p~~Gl~~d~-~G~L~v~d~~~g~~~v-~~~  145 (239)
                      +..|+++++|+ ++.||+++ .+++|++++.+|    + .+.+.. ....|. |+++|. +++||++|...+.+.+ +.+
T Consensus        29 ~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~-glavd~~~~~ly~~d~~~~~I~~~~~~  107 (316)
T 1ijq_A           29 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD-GLAVDWIHSNIYWTDSVLGTVSVADTK  107 (316)
T ss_dssp             CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCC-EEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             CCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcC-EEEEeecCCeEEEEECCCCEEEEEeCC
Confidence            67899999997 67899887 679999999876    2 233332 346899 999995 6789999988766655 466


Q ss_pred             C--ceEEecccCCccccccccEEEcC-CCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEec-CCCCCcc
Q 026389          146 G--VTVLASHVNGSRINLADDLIAAT-DGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILL-DSLFFAN  221 (239)
Q Consensus       146 g--~~~l~~~~~g~~~~~pn~l~vd~-dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~-~~l~~pn  221 (239)
                      |  .+.+...    .+..|+++++|+ +|+|||+|..                ..++|+++++++...+++. ..+..||
T Consensus       108 g~~~~~~~~~----~~~~P~~iavdp~~g~ly~~d~~----------------~~~~I~~~~~dG~~~~~~~~~~~~~P~  167 (316)
T 1ijq_A          108 GVKRKTLFRE----NGSKPRAIVVDPVHGFMYWTDWG----------------TPAKIKKGGLNGVDIYSLVTENIQWPN  167 (316)
T ss_dssp             SSSEEEEEEC----TTCCEEEEEEETTTTEEEEEECS----------------SSCEEEEEETTSCCEEEEECSSCSCEE
T ss_pred             CCceEEEEEC----CCCCcceEEeCCCCCEEEEEccC----------------CCCeEEEEcCCCCCeEEEEECCCCCce
Confidence            6  4445431    346799999998 5799999964                1379999999866665554 5789999


Q ss_pred             eEEEcCCCCEEEEEeCC
Q 026389          222 GVALSKDEDYLVVCETF  238 (239)
Q Consensus       222 Gia~s~dg~~lyvadt~  238 (239)
                      ||+++++++.||++|+.
T Consensus       168 gla~d~~~~~lY~~D~~  184 (316)
T 1ijq_A          168 GITLDLLSGRLYWVDSK  184 (316)
T ss_dssp             EEEEETTTTEEEEEETT
T ss_pred             EEEEeccCCEEEEEECC
Confidence            99999999999999975

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=99.72  E-value=2.9e-16  Score=147.75  Aligned_cols=147  Identities=16%  Similarity=0.144  Sum_probs=118.5

Q ss_pred             eccCCcCCcceEEEcC-CCCEEEEe-CCCeEEEEecCCc-EEEeeec-cCcCccCeEEcC-CCCEEEEeCCCCeEEEc-c
Q 026389           71 LGEGILNGPEDVCVDR-NGVLYTAT-RDGWIKRLHKNGT-WENWKLI-GGDTLLGITTTQ-ENEILVCDADKGLLKVT-E  144 (239)
Q Consensus        71 l~~g~~~gPe~ia~d~-~G~ly~~~-~~g~I~~~~~~G~-~~~~~~~-~~~p~~Gl~~d~-~G~L~v~d~~~g~~~v~-~  144 (239)
                      +....+..|.+|++|+ +|.||+++ .+++|++++.+|. .+.+... ...|. ||++|. .++||++|...+.+.+. .
T Consensus        31 ~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~-GlAvD~~~~~LY~tD~~~~~I~v~~~  109 (628)
T 4a0p_A           31 IPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPE-GMAVDWLGKNLYWADTGTNRIEVSKL  109 (628)
T ss_dssp             CCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCC-EEEEETTTTEEEEEETTTTEEEEEET
T ss_pred             EEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcc-eEEEEeCCCEEEEEECCCCEEEEEec
Confidence            3334467899999997 78999887 7899999998874 4444443 36799 999995 46899999988777665 6


Q ss_pred             CC--ceEEecccCCccccccccEEEcC-CCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecCCCCCcc
Q 026389          145 EG--VTVLASHVNGSRINLADDLIAAT-DGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFAN  221 (239)
Q Consensus       145 ~g--~~~l~~~~~g~~~~~pn~l~vd~-dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~~l~~pn  221 (239)
                      +|  .+++..    ..+..|++|++|| +|.|||||..                ..++|+++++++...+++.+++..||
T Consensus       110 dG~~~~~l~~----~~l~~P~~iavdp~~G~lY~tD~g----------------~~~~I~r~~~dG~~~~~l~~~~~~P~  169 (628)
T 4a0p_A          110 DGQHRQVLVW----KDLDSPRALALDPAEGFMYWTEWG----------------GKPKIDRAAMDGSERTTLVPNVGRAN  169 (628)
T ss_dssp             TSTTCEEEEC----SSCCCEEEEEEETTTTEEEEEECS----------------SSCEEEEEETTSCSCEEEECSCSSEE
T ss_pred             CCCcEEEEEe----CCCCCcccEEEccCCCeEEEeCCC----------------CCCEEEEEeCCCCceEEEECCCCCcc
Confidence            77  555543    2456799999998 6899999954                14799999999888888888999999


Q ss_pred             eEEEcCCCCEEEEEeCC
Q 026389          222 GVALSKDEDYLVVCETF  238 (239)
Q Consensus       222 Gia~s~dg~~lyvadt~  238 (239)
                      ||+++++++.|||+|+.
T Consensus       170 GlalD~~~~~LY~aD~~  186 (628)
T 4a0p_A          170 GLTIDYAKRRLYWTDLD  186 (628)
T ss_dssp             EEEEETTTTEEEEEETT
T ss_pred             eEEEccccCEEEEEECC
Confidence            99999999999999975

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=99.71  E-value=4.1e-16  Score=139.13  Aligned_cols=142  Identities=14%  Similarity=0.138  Sum_probs=110.0

Q ss_pred             cCCcceEEEcC-CCCEEEEe-CCCeEEEEecCCc-----EEEee-eccCcCccCeEEcC-CCCEEEEeCCCCeEEE-ccC
Q 026389           76 LNGPEDVCVDR-NGVLYTAT-RDGWIKRLHKNGT-----WENWK-LIGGDTLLGITTTQ-ENEILVCDADKGLLKV-TEE  145 (239)
Q Consensus        76 ~~gPe~ia~d~-~G~ly~~~-~~g~I~~~~~~G~-----~~~~~-~~~~~p~~Gl~~d~-~G~L~v~d~~~g~~~v-~~~  145 (239)
                      +..|.+|+||+ ++.||+++ .+++|++++.+|.     .+.+. .....|. ||++|. .++||++|...+.+.+ +.+
T Consensus       111 ~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~-glavD~~~~~lY~~d~~~~~I~~~~~~  189 (400)
T 3p5b_L          111 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD-GLAVDWIHSNIYWTDSVLGTVSVADTK  189 (400)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEE-EEEEETTTTEEEEEETTTTEEEEECTT
T ss_pred             cCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcc-cEEEEecCCceEEEECCCCeEEEEeCC
Confidence            67899999997 78999887 7789999998762     23333 3557899 999996 6799999988776665 466


Q ss_pred             C--ceEEecccCCccccccccEEEcC-CCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEec-CCCCCcc
Q 026389          146 G--VTVLASHVNGSRINLADDLIAAT-DGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILL-DSLFFAN  221 (239)
Q Consensus       146 g--~~~l~~~~~g~~~~~pn~l~vd~-dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~-~~l~~pn  221 (239)
                      |  .+++..    ..+..|++|++|+ +|.|||||...                .++|+++++++...+.+. .++..||
T Consensus       190 g~~~~~l~~----~~~~~P~~iavdp~~g~ly~td~~~----------------~~~I~~~~~dG~~~~~~~~~~l~~P~  249 (400)
T 3p5b_L          190 GVKRKTLFR----ENGSKPRAIVVDPVHGFMYWTDWGT----------------PAKIKKGGLNGVDIYSLVTENIQWPN  249 (400)
T ss_dssp             TCSEEEEEE----CSSCCEEEEEEETTTTEEEEEECSS----------------SCCEEEEETTSCSCEEEECSSCSCEE
T ss_pred             CCceEEEEe----CCCCCcceEEEecccCeEEEEeCCC----------------CCEEEEEeCCCCccEEEEECCCCceE
Confidence            6  445543    2356799999998 57999999641                378999999876655554 6789999


Q ss_pred             eEEEcCCCCEEEEEeCC
Q 026389          222 GVALSKDEDYLVVCETF  238 (239)
Q Consensus       222 Gia~s~dg~~lyvadt~  238 (239)
                      ||+++++++.|||+|+.
T Consensus       250 glavd~~~~~lY~aD~~  266 (400)
T 3p5b_L          250 GITLDLLSGRLYWVDSK  266 (400)
T ss_dssp             EEEEETTTTEEEEEETT
T ss_pred             EEEEEeCCCEEEEEECC
Confidence            99999999999999975

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=99.71  E-value=3.7e-16  Score=135.38  Aligned_cols=142  Identities=17%  Similarity=0.192  Sum_probs=111.1

Q ss_pred             cCCcceEEEcC-CCCEEEEe-CCCeEEEEecCCcE---EEeeeccCcCccCeEEcC-CCCEEEEeCCCCeEEE-ccCC--
Q 026389           76 LNGPEDVCVDR-NGVLYTAT-RDGWIKRLHKNGTW---ENWKLIGGDTLLGITTTQ-ENEILVCDADKGLLKV-TEEG--  146 (239)
Q Consensus        76 ~~gPe~ia~d~-~G~ly~~~-~~g~I~~~~~~G~~---~~~~~~~~~p~~Gl~~d~-~G~L~v~d~~~g~~~v-~~~g--  146 (239)
                      +..|.+++||+ +|.||+++ .+++|++++.+|..   .........|. |+++|. .|+||++|...+.+.+ +.+|  
T Consensus        34 ~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~-glavd~~~g~ly~~d~~~~~I~~~~~dG~~  112 (318)
T 3sov_A           34 LEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPD-GLACDWLGEKLYWTDSETNRIEVSNLDGSL  112 (318)
T ss_dssp             EEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCC-EEEEETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred             CCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCcc-EEEEEcCCCeEEEEECCCCEEEEEECCCCc
Confidence            45688899997 68999887 78899999987752   23344457899 999995 6799999988766655 4677  


Q ss_pred             ceEEecccCCccccccccEEEcCC-CCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEec-CCCCCcceEE
Q 026389          147 VTVLASHVNGSRINLADDLIAATD-GSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILL-DSLFFANGVA  224 (239)
Q Consensus       147 ~~~l~~~~~g~~~~~pn~l~vd~d-G~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~-~~l~~pnGia  224 (239)
                      .+++..    ..+..|+++++|+. |.||++|..                ..++|+++++++...+++. .++..||||+
T Consensus       113 ~~~l~~----~~~~~P~giavdp~~g~ly~td~~----------------~~~~I~r~~~dG~~~~~~~~~~l~~Pngla  172 (318)
T 3sov_A          113 RKVLFW----QELDQPRAIALDPSSGFMYWTDWG----------------EVPKIERAGMDGSSRFIIINSEIYWPNGLT  172 (318)
T ss_dssp             CEEEEC----SSCSSEEEEEEEGGGTEEEEEECS----------------SSCEEEEEETTSCSCEEEECSSCSCEEEEE
T ss_pred             EEEEEe----CCCCCccEEEEeCCCCEEEEEecC----------------CCCEEEEEEcCCCCeEEEEECCCCCccEEE
Confidence            455542    23567999999985 799999964                1479999999866555554 6789999999


Q ss_pred             EcCCCCEEEEEeCC
Q 026389          225 LSKDEDYLVVCETF  238 (239)
Q Consensus       225 ~s~dg~~lyvadt~  238 (239)
                      ++++++.||++|+.
T Consensus       173 vd~~~~~lY~aD~~  186 (318)
T 3sov_A          173 LDYEEQKLYWADAK  186 (318)
T ss_dssp             EETTTTEEEEEETT
T ss_pred             EeccCCEEEEEECC
Confidence            99999999999975

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=99.70  E-value=3.4e-16  Score=140.93  Aligned_cols=140  Identities=14%  Similarity=0.166  Sum_probs=111.3

Q ss_pred             CcCCcceEEEcC--CCCEEEEeCCCeEEEEecCC-cEEEeeeccCcCccCeEEcCCCC-EEEEeCCC-----CeEEEccC
Q 026389           75 ILNGPEDVCVDR--NGVLYTATRDGWIKRLHKNG-TWENWKLIGGDTLLGITTTQENE-ILVCDADK-----GLLKVTEE  145 (239)
Q Consensus        75 ~~~gPe~ia~d~--~G~ly~~~~~g~I~~~~~~G-~~~~~~~~~~~p~~Gl~~d~~G~-L~v~d~~~-----g~~~v~~~  145 (239)
                      ++..|.+|++|+  +|+||+++..++|.+++.++ +++.+......|. +++++++|+ |||+|...     .++.++.+
T Consensus       135 ~~~~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~~~~~P~-~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~  213 (430)
T 3tc9_A          135 GFGGAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYSGLSKVR-TICWTHEADSMIITNDQNNNDRPNNYILTRE  213 (430)
T ss_dssp             CCSCCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEECCCSCEE-EEEECTTSSEEEEEECCSCTTSEEEEEEEGG
T ss_pred             CCCCCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEecCCCCcc-eEEEeCCCCEEEEEeCCCCcccceEEEEeCC
Confidence            478999999996  58999998669999999876 5666666677899 999999997 99999743     24445555


Q ss_pred             C-ce---EEecccCCccccccccEEEcC-CCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEec--CCCC
Q 026389          146 G-VT---VLASHVNGSRINLADDLIAAT-DGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILL--DSLF  218 (239)
Q Consensus       146 g-~~---~l~~~~~g~~~~~pn~l~vd~-dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~--~~l~  218 (239)
                      | ..   .+.      .+.+|+++++++ +|+|||+|..                 +++|++|++++++...+.  ....
T Consensus       214 g~~~~~~~l~------~~~~p~giavdp~~g~lyv~d~~-----------------~~~V~~~~~~~~~~~~~~~~~~~~  270 (430)
T 3tc9_A          214 SGFKVITELT------KGQNCNGAETHPINGELYFNSWN-----------------AGQVFRYDFTTQETTPLFTIQDSG  270 (430)
T ss_dssp             GTSCSEEEEE------ECSSCCCEEECTTTCCEEEEETT-----------------TTEEEEEETTTTEEEEEEECSSSS
T ss_pred             Cceeeeeeec------cCCCceEEEEeCCCCEEEEEECC-----------------CCEEEEEECCCCcEEEEEEcCCCC
Confidence            5 22   222      357899999999 7999999976                 589999999987763332  3456


Q ss_pred             CcceEEEcCCCCEEEEEeCC
Q 026389          219 FANGVALSKDEDYLVVCETF  238 (239)
Q Consensus       219 ~pnGia~s~dg~~lyvadt~  238 (239)
                      .|+||+++++|++|||+|+.
T Consensus       271 ~P~gia~~pdG~~lyv~d~~  290 (430)
T 3tc9_A          271 WEFHIQFHPSGNYAYIVVVN  290 (430)
T ss_dssp             CCEEEEECTTSSEEEEEETT
T ss_pred             cceeEEEcCCCCEEEEEECC
Confidence            79999999999999999875

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=99.70  E-value=8.8e-16  Score=128.47  Aligned_cols=143  Identities=17%  Similarity=0.162  Sum_probs=109.4

Q ss_pred             cCCcceEEEcC-CCCEEEEe-CCCeEEEEecCCc-EEEeeec-cCcCccCeEEcCC-CCEEEEeCCCCeEE-EccCC--c
Q 026389           76 LNGPEDVCVDR-NGVLYTAT-RDGWIKRLHKNGT-WENWKLI-GGDTLLGITTTQE-NEILVCDADKGLLK-VTEEG--V  147 (239)
Q Consensus        76 ~~gPe~ia~d~-~G~ly~~~-~~g~I~~~~~~G~-~~~~~~~-~~~p~~Gl~~d~~-G~L~v~d~~~g~~~-v~~~g--~  147 (239)
                      ...|+++++|+ ++.||+++ .+++|++++.+|+ .+.+... ...|. |+++|++ |+|||+|...+.+. ++.+|  .
T Consensus        35 ~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~-~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~  113 (267)
T 1npe_A           35 AKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPE-GIALDHLGRTIFWTDSQLDRIEVAKMDGTQR  113 (267)
T ss_dssp             EEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEE-EEEEETTTTEEEEEETTTTEEEEEETTSCSC
T ss_pred             CCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCcc-EEEEEecCCeEEEEECCCCEEEEEEcCCCCE
Confidence            35789999998 67899888 6789999998875 3333332 36899 9999975 68999998766555 45666  4


Q ss_pred             eEEecccCCccccccccEEEcCC-CCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEec-CCCCCcceEEE
Q 026389          148 TVLASHVNGSRINLADDLIAATD-GSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILL-DSLFFANGVAL  225 (239)
Q Consensus       148 ~~l~~~~~g~~~~~pn~l~vd~d-G~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~-~~l~~pnGia~  225 (239)
                      +.+..    ..+..|+++++|++ |++||+|...               .+++|+++++++...+.+. .++..|+||++
T Consensus       114 ~~~~~----~~~~~P~~i~vd~~~g~lyv~~~~~---------------~~~~I~~~~~dg~~~~~~~~~~~~~P~gia~  174 (267)
T 1npe_A          114 RVLFD----TGLVNPRGIVTDPVRGNLYWTDWNR---------------DNPKIETSHMDGTNRRILAQDNLGLPNGLTF  174 (267)
T ss_dssp             EEEEC----SSCSSEEEEEEETTTTEEEEEECCS---------------SSCEEEEEETTSCCCEEEECTTCSCEEEEEE
T ss_pred             EEEEE----CCCCCccEEEEeeCCCEEEEEECCC---------------CCcEEEEEecCCCCcEEEEECCCCCCcEEEE
Confidence            44432    12467999999995 7999999641               1478999999865555554 56789999999


Q ss_pred             cCCCCEEEEEeCC
Q 026389          226 SKDEDYLVVCETF  238 (239)
Q Consensus       226 s~dg~~lyvadt~  238 (239)
                      ++++++|||+|+.
T Consensus       175 d~~~~~lyv~d~~  187 (267)
T 1npe_A          175 DAFSSQLCWVDAG  187 (267)
T ss_dssp             ETTTTEEEEEETT
T ss_pred             cCCCCEEEEEECC
Confidence            9999999999975

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=99.69  E-value=5.7e-16  Score=134.24  Aligned_cols=140  Identities=16%  Similarity=0.128  Sum_probs=110.2

Q ss_pred             CcCCcceEEEcC-CCCEEEEe-CCCeEEEEecCCcE-EEee-eccCcCccCeEEcC-CCCEEEEeCC--CCeEEEccCC-
Q 026389           75 ILNGPEDVCVDR-NGVLYTAT-RDGWIKRLHKNGTW-ENWK-LIGGDTLLGITTTQ-ENEILVCDAD--KGLLKVTEEG-  146 (239)
Q Consensus        75 ~~~gPe~ia~d~-~G~ly~~~-~~g~I~~~~~~G~~-~~~~-~~~~~p~~Gl~~d~-~G~L~v~d~~--~g~~~v~~~g-  146 (239)
                      .+..|+|+++|+ +|+||+++ ..++|.+++.+|+. +.+. .....|. |+++|+ .|.||++|..  ..+.+++.+| 
T Consensus        77 ~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~-giavdp~~g~ly~td~~~~~~I~r~~~dG~  155 (318)
T 3sov_A           77 GLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPR-AIALDPSSGFMYWTDWGEVPKIERAGMDGS  155 (318)
T ss_dssp             CCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEE-EEEEEGGGTEEEEEECSSSCEEEEEETTSC
T ss_pred             CCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCcc-EEEEeCCCCEEEEEecCCCCEEEEEEcCCC
Confidence            367899999996 78999887 67899999998863 3333 4567899 999996 5789999964  4556666777 


Q ss_pred             -ceEEecccCCccccccccEEEcCC-CCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecC-CCCCcceE
Q 026389          147 -VTVLASHVNGSRINLADDLIAATD-GSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLD-SLFFANGV  223 (239)
Q Consensus       147 -~~~l~~~~~g~~~~~pn~l~vd~d-G~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~-~l~~pnGi  223 (239)
                       .+.+..    ..+..||+|++|++ |+|||+|..                 .++|+++|.++...+++.. .+.+|+||
T Consensus       156 ~~~~~~~----~~l~~Pnglavd~~~~~lY~aD~~-----------------~~~I~~~d~dG~~~~~~~~~~~~~P~gl  214 (318)
T 3sov_A          156 SRFIIIN----SEIYWPNGLTLDYEEQKLYWADAK-----------------LNFIHKSNLDGTNRQAVVKGSLPHPFAL  214 (318)
T ss_dssp             SCEEEEC----SSCSCEEEEEEETTTTEEEEEETT-----------------TTEEEEEETTSCSCEEEECSCCSCEEEE
T ss_pred             CeEEEEE----CCCCCccEEEEeccCCEEEEEECC-----------------CCEEEEEcCCCCceEEEecCCCCCceEE
Confidence             455543    23678999999985 699999976                 5799999998776666665 78999999


Q ss_pred             EEcCCCCEEEEEeCC
Q 026389          224 ALSKDEDYLVVCETF  238 (239)
Q Consensus       224 a~s~dg~~lyvadt~  238 (239)
                      +++  ++.+|++|+.
T Consensus       215 av~--~~~lywtd~~  227 (318)
T 3sov_A          215 TLF--EDILYWTDWS  227 (318)
T ss_dssp             EEE--TTEEEEEETT
T ss_pred             EEe--CCEEEEEecC
Confidence            995  5579999875

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=99.69  E-value=1.4e-15  Score=131.22  Aligned_cols=141  Identities=15%  Similarity=0.178  Sum_probs=109.5

Q ss_pred             CCcCCcceEEEcC-CCCEEEEe-CCCeEEEEecCCcE-EEeee-ccCcCccCeEEcC-CCCEEEEeCCC-C-eEEEccCC
Q 026389           74 GILNGPEDVCVDR-NGVLYTAT-RDGWIKRLHKNGTW-ENWKL-IGGDTLLGITTTQ-ENEILVCDADK-G-LLKVTEEG  146 (239)
Q Consensus        74 g~~~gPe~ia~d~-~G~ly~~~-~~g~I~~~~~~G~~-~~~~~-~~~~p~~Gl~~d~-~G~L~v~d~~~-g-~~~v~~~g  146 (239)
                      ..+..|++|++|+ +|+||+++ .+++|.+++.+|+. +.+.. ....|. |+++|+ +|+||++|... + +.+++.+|
T Consensus        74 ~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~-~iavdp~~g~ly~~d~~~~~~I~~~~~dG  152 (316)
T 1ijq_A           74 RDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPR-AIVVDPVHGFMYWTDWGTPAKIKKGGLNG  152 (316)
T ss_dssp             SSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEE-EEEEETTTTEEEEEECSSSCEEEEEETTS
T ss_pred             CCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcc-eEEeCCCCCEEEEEccCCCCeEEEEcCCC
Confidence            3467999999996 78999887 77899999998863 33433 457899 999996 67899999864 4 55566777


Q ss_pred             --ceEEecccCCccccccccEEEcCC-CCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecC---CCCCc
Q 026389          147 --VTVLASHVNGSRINLADDLIAATD-GSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLD---SLFFA  220 (239)
Q Consensus       147 --~~~l~~~~~g~~~~~pn~l~vd~d-G~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~---~l~~p  220 (239)
                        .+++..    ..+..||++++|++ ++|||+|..                 .++|+++|.++...+++..   .+.+|
T Consensus       153 ~~~~~~~~----~~~~~P~gla~d~~~~~lY~~D~~-----------------~~~I~~~d~dg~~~~~~~~~~~~~~~P  211 (316)
T 1ijq_A          153 VDIYSLVT----ENIQWPNGITLDLLSGRLYWVDSK-----------------LHSISSIDVNGGNRKTILEDEKRLAHP  211 (316)
T ss_dssp             CCEEEEEC----SSCSCEEEEEEETTTTEEEEEETT-----------------TTEEEEEETTSCSCEEEEECTTTTSSE
T ss_pred             CCeEEEEE----CCCCCceEEEEeccCCEEEEEECC-----------------CCeEEEEecCCCceEEEeecCCccCCc
Confidence              444432    24678999999976 699999976                 5799999998766666653   47899


Q ss_pred             ceEEEcCCCCEEEEEeCC
Q 026389          221 NGVALSKDEDYLVVCETF  238 (239)
Q Consensus       221 nGia~s~dg~~lyvadt~  238 (239)
                      .||+++  ++.|||+|..
T Consensus       212 ~giav~--~~~ly~~d~~  227 (316)
T 1ijq_A          212 FSLAVF--EDKVFWTDII  227 (316)
T ss_dssp             EEEEEE--TTEEEEEETT
T ss_pred             EEEEEE--CCEEEEEECC
Confidence            999995  4689999964

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=99.68  E-value=1.5e-15  Score=142.65  Aligned_cols=143  Identities=18%  Similarity=0.194  Sum_probs=114.9

Q ss_pred             CcCCcceEEEcC-CCCEEEEe-CCCeEEEEecCCc-EEEeee-ccCcCccCeEEcC-CCCEEEEeCCCCeEEEc-cCC--
Q 026389           75 ILNGPEDVCVDR-NGVLYTAT-RDGWIKRLHKNGT-WENWKL-IGGDTLLGITTTQ-ENEILVCDADKGLLKVT-EEG--  146 (239)
Q Consensus        75 ~~~gPe~ia~d~-~G~ly~~~-~~g~I~~~~~~G~-~~~~~~-~~~~p~~Gl~~d~-~G~L~v~d~~~g~~~v~-~~g--  146 (239)
                      .+..|.+|++|+ +|.||+++ ..++|+|++.+|+ .+.+.. ....|. ||++|. .++||++|...+.+.+. .+|  
T Consensus       347 ~l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~~~~~p~-GlAvD~~~~~lY~tD~~~~~I~v~~~~G~~  425 (619)
T 3s94_A          347 DIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIAHPD-GIAVDWVARNLYWTDTGTDRIEVTRLNGTM  425 (619)
T ss_dssp             CCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCC-EEEEETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred             ccCccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEECCCCCcC-ceEEecccCcEEEEeCCCCcEEEEeCCCCe
Confidence            367789999997 78999888 7899999999874 444433 347899 999995 67899999988888776 577  


Q ss_pred             ceEEecccCCccccccccEEEcCC-CCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEec-CCCCCcceEE
Q 026389          147 VTVLASHVNGSRINLADDLIAATD-GSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILL-DSLFFANGVA  224 (239)
Q Consensus       147 ~~~l~~~~~g~~~~~pn~l~vd~d-G~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~-~~l~~pnGia  224 (239)
                      .+++..    ..+..|++|++||. |.+||||...                .++|++.+.++...+++. ..+..||||+
T Consensus       426 ~~~l~~----~~l~~P~~iavdp~~G~ly~tD~g~----------------~~~I~r~~~dG~~~~~l~~~~l~~P~Gla  485 (619)
T 3s94_A          426 RKILIS----EDLEEPRAIVLDPMVGYMYWTDWGE----------------IPKIERAALDGSDRVVLVNTSLGWPNGLA  485 (619)
T ss_dssp             CEEEEC----TTCCSEEEEEEETTTTEEEEEECSS----------------SCEEEEEETTSCSCEEEECSSCSCEEEEE
T ss_pred             EEEEEE----CCCCCeeeEEEEcCCCcEEEecCCC----------------CCEEEEEccCCCccEEEEeCCCCCCeeeE
Confidence            555543    24678999999995 9999999651                378999999876555554 4699999999


Q ss_pred             EcCCCCEEEEEeCC
Q 026389          225 LSKDEDYLVVCETF  238 (239)
Q Consensus       225 ~s~dg~~lyvadt~  238 (239)
                      ++++++.|||+|+.
T Consensus       486 lD~~~~~LY~aD~~  499 (619)
T 3s94_A          486 LDYDEGKIYWGDAK  499 (619)
T ss_dssp             EETTTTEEEEEETT
T ss_pred             EcccCCEEEEEECC
Confidence            99999999999985

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=99.68  E-value=1.5e-15  Score=142.64  Aligned_cols=143  Identities=17%  Similarity=0.212  Sum_probs=112.1

Q ss_pred             CcCCcceEEEcC-CCCEEEEe-CCCeEEEEecCCc--EEEeee-ccCcCccCeEEcC-CCCEEEEeCCCCeEEEc-cCC-
Q 026389           75 ILNGPEDVCVDR-NGVLYTAT-RDGWIKRLHKNGT--WENWKL-IGGDTLLGITTTQ-ENEILVCDADKGLLKVT-EEG-  146 (239)
Q Consensus        75 ~~~gPe~ia~d~-~G~ly~~~-~~g~I~~~~~~G~--~~~~~~-~~~~p~~Gl~~d~-~G~L~v~d~~~g~~~v~-~~g-  146 (239)
                      .+..|.+|++++ +|.||+++ .+++|.+++.+|.  .+.... ....|. ||++|. .++||++|...+.+.+. .+| 
T Consensus        38 ~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~-GlAvD~~~~~ly~~d~~~~~I~v~~~dG~  116 (619)
T 3s94_A           38 GLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPD-GLACDWLGEKLYWTDSETNRIEVSNLDGS  116 (619)
T ss_dssp             CCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEE-EEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred             CCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcC-eEEEEecCCEEEEEeCCCCEEEEEECCCC
Confidence            367899999997 78999888 7899999998875  233333 347899 999997 56899999988877765 677 


Q ss_pred             -ceEEecccCCccccccccEEEcCC-CCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEec-CCCCCcceE
Q 026389          147 -VTVLASHVNGSRINLADDLIAATD-GSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILL-DSLFFANGV  223 (239)
Q Consensus       147 -~~~l~~~~~g~~~~~pn~l~vd~d-G~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~-~~l~~pnGi  223 (239)
                       .+++..    ..+..|++|++|+. |.|||||...                .++|++.++++...+.+. ..+..||||
T Consensus       117 ~~~~l~~----~~l~~P~~Iavdp~~g~ly~tD~g~----------------~~~I~r~~~dG~~~~~l~~~~~~~P~Gl  176 (619)
T 3s94_A          117 LRKVLFW----QELDQPRAIALDPSSGFMYWTDWGE----------------VPKIERAGMDGSSRFIIINSEIYWPNGL  176 (619)
T ss_dssp             SCEEEEC----SSCSCCCCEEEETTTTEEEEEECSS----------------SCEEEEEETTSCSCEEEECSSCSSEEEE
T ss_pred             CEEEEEe----CCCCCCceEEEecCCCeEEEeccCC----------------CCEEEEEECCCCceEEEEeCCCCCCcEE
Confidence             555543    34677999999996 7999999541                479999999876665555 578999999


Q ss_pred             EEcCCCCEEEEEeCC
Q 026389          224 ALSKDEDYLVVCETF  238 (239)
Q Consensus       224 a~s~dg~~lyvadt~  238 (239)
                      +++++++.|||+|+.
T Consensus       177 ald~~~~~LY~aD~~  191 (619)
T 3s94_A          177 TLDYEEQKLYWADAK  191 (619)
T ss_dssp             EEETTTTEEEEEETT
T ss_pred             EEEccCCEEEEEeCC
Confidence            999999999999974

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=99.67  E-value=3.4e-15  Score=124.87  Aligned_cols=141  Identities=16%  Similarity=0.145  Sum_probs=108.9

Q ss_pred             CCcCCcceEEEcC-CCCEEEEe-CCCeEEEEecCCcE-EEeeec-cCcCccCeEEcC-CCCEEEEeCC--CCe-EEEccC
Q 026389           74 GILNGPEDVCVDR-NGVLYTAT-RDGWIKRLHKNGTW-ENWKLI-GGDTLLGITTTQ-ENEILVCDAD--KGL-LKVTEE  145 (239)
Q Consensus        74 g~~~gPe~ia~d~-~G~ly~~~-~~g~I~~~~~~G~~-~~~~~~-~~~p~~Gl~~d~-~G~L~v~d~~--~g~-~~v~~~  145 (239)
                      ..+..|+++++|+ +|+||+++ ..++|.+++.+|+. +.+... ...|. |+++|+ +|+|||++..  .+. .+++.+
T Consensus        76 ~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~-~i~vd~~~g~lyv~~~~~~~~~I~~~~~d  154 (267)
T 1npe_A           76 QDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPR-GIVTDPVRGNLYWTDWNRDNPKIETSHMD  154 (267)
T ss_dssp             TTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEE-EEEEETTTTEEEEEECCSSSCEEEEEETT
T ss_pred             CCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCcc-EEEEeeCCCEEEEEECCCCCcEEEEEecC
Confidence            3367999999998 57899888 67899999988853 333332 36899 999998 5789999976  344 455666


Q ss_pred             C--ceEEecccCCccccccccEEEcCC-CCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecCCCCCcce
Q 026389          146 G--VTVLASHVNGSRINLADDLIAATD-GSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANG  222 (239)
Q Consensus       146 g--~~~l~~~~~g~~~~~pn~l~vd~d-G~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~~l~~pnG  222 (239)
                      |  .+++..    ..+..|++++++++ ++||++|..                 .++|+++|++++..+.+..++..|.|
T Consensus       155 g~~~~~~~~----~~~~~P~gia~d~~~~~lyv~d~~-----------------~~~I~~~~~~g~~~~~~~~~~~~P~g  213 (267)
T 1npe_A          155 GTNRRILAQ----DNLGLPNGLTFDAFSSQLCWVDAG-----------------THRAECLNPAQPGRRKVLEGLQYPFA  213 (267)
T ss_dssp             SCCCEEEEC----TTCSCEEEEEEETTTTEEEEEETT-----------------TTEEEEEETTEEEEEEEEECCCSEEE
T ss_pred             CCCcEEEEE----CCCCCCcEEEEcCCCCEEEEEECC-----------------CCEEEEEecCCCceEEEecCCCCceE
Confidence            6  444432    23568999999997 589999976                 57999999987777777778889999


Q ss_pred             EEEcCCCCEEEEEeCC
Q 026389          223 VALSKDEDYLVVCETF  238 (239)
Q Consensus       223 ia~s~dg~~lyvadt~  238 (239)
                      |+++  ++.|||++..
T Consensus       214 i~~d--~~~lyva~~~  227 (267)
T 1npe_A          214 VTSY--GKNLYYTDWK  227 (267)
T ss_dssp             EEEE--TTEEEEEETT
T ss_pred             EEEe--CCEEEEEECC
Confidence            9875  6789999864

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=99.67  E-value=2.7e-15  Score=131.41  Aligned_cols=145  Identities=15%  Similarity=0.144  Sum_probs=110.0

Q ss_pred             EeccCCcCCcceEEEcC-CCCEEEEe-CCCeEEEEecCCcE-EEee-eccCcCccCeEEcC-CCCEEEEeCCC-CeE-EE
Q 026389           70 RLGEGILNGPEDVCVDR-NGVLYTAT-RDGWIKRLHKNGTW-ENWK-LIGGDTLLGITTTQ-ENEILVCDADK-GLL-KV  142 (239)
Q Consensus        70 ~l~~g~~~gPe~ia~d~-~G~ly~~~-~~g~I~~~~~~G~~-~~~~-~~~~~p~~Gl~~d~-~G~L~v~d~~~-g~~-~v  142 (239)
                      .+....+..|+++++|+ +|+||+++ ..++|.+++.+|+. +.+. .....|. |+++|+ +|.||++|... +.+ ++
T Consensus       109 ~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~-~iavdp~~g~ly~td~~~~~~I~r~  187 (349)
T 3v64_C          109 EVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPR-AIALHPMEGTIYWTDWGNTPRIEAS  187 (349)
T ss_dssp             EEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEE-EEEEETTTTEEEEEECSSSCEEEEE
T ss_pred             EEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcc-eEEEecCcCeEEEeccCCCCEEEEE
Confidence            33333367899999997 78999888 67899999998864 3333 3457899 999996 66899999875 544 55


Q ss_pred             ccCC--ceEEecccCCccccccccEEEcC-CCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEe-cCCCC
Q 026389          143 TEEG--VTVLASHVNGSRINLADDLIAAT-DGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSIL-LDSLF  218 (239)
Q Consensus       143 ~~~g--~~~l~~~~~g~~~~~pn~l~vd~-dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~-~~~l~  218 (239)
                      +.+|  .+.+..    ..+..||+|++|+ +|+|||+|..                 .++|+++|.++...+.+ ..++.
T Consensus       188 ~~dG~~~~~~~~----~~~~~PnGla~d~~~~~lY~aD~~-----------------~~~I~~~~~dG~~~~~~~~~~~~  246 (349)
T 3v64_C          188 SMDGSGRRIIAD----THLFWPNGLTIDYAGRRMYWVDAK-----------------HHVIERANLDGSHRKAVISQGLP  246 (349)
T ss_dssp             ETTSCSCEESCC----SSCSCEEEEEEETTTTEEEEEETT-----------------TTEEEEEETTSCSCEEEECSSCS
T ss_pred             eCCCCCcEEEEE----CCCCCcceEEEeCCCCEEEEEECC-----------------CCEEEEEeCCCCceEEEEeCCCC
Confidence            5677  444432    2467899999997 5699999976                 57999999987655544 45689


Q ss_pred             CcceEEEcCCCCEEEEEeCC
Q 026389          219 FANGVALSKDEDYLVVCETF  238 (239)
Q Consensus       219 ~pnGia~s~dg~~lyvadt~  238 (239)
                      +|+||+++  ++.|||+|..
T Consensus       247 ~P~giav~--~~~ly~td~~  264 (349)
T 3v64_C          247 HPFAITVF--EDSLYWTDWH  264 (349)
T ss_dssp             SEEEEEEE--TTEEEEEETT
T ss_pred             CceEEEEE--CCEEEEecCC
Confidence            99999993  5689999975

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.67  E-value=3.7e-15  Score=133.18  Aligned_cols=145  Identities=12%  Similarity=0.119  Sum_probs=109.5

Q ss_pred             cCCcceEEEcC-CCCEEEEeCCCeEEEEecCC-cEEEeee---c---cCcCccCeEEcC-CCCEEEEeCCCCeEE-EccC
Q 026389           76 LNGPEDVCVDR-NGVLYTATRDGWIKRLHKNG-TWENWKL---I---GGDTLLGITTTQ-ENEILVCDADKGLLK-VTEE  145 (239)
Q Consensus        76 ~~gPe~ia~d~-~G~ly~~~~~g~I~~~~~~G-~~~~~~~---~---~~~p~~Gl~~d~-~G~L~v~d~~~g~~~-v~~~  145 (239)
                      ...|.++++++ +|.||+++.+++|++++.++ ....+..   .   ...|..++++++ +|+|||+|...+.++ ++.+
T Consensus       218 ~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~  297 (409)
T 3hrp_A          218 SGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPD  297 (409)
T ss_dssp             CSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTT
T ss_pred             cCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecC
Confidence            57899999999 89999988889999999864 3443311   1   112312899998 589999998876655 5577


Q ss_pred             C-ceEEeccc--CC--------ccccccccEEEcCCCCEEEEeC-CCCcCcccccccceeecCCceEEEEeCCCCeEEEe
Q 026389          146 G-VTVLASHV--NG--------SRINLADDLIAATDGSIYFSVA-STKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSIL  213 (239)
Q Consensus       146 g-~~~l~~~~--~g--------~~~~~pn~l~vd~dG~iy~td~-~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~  213 (239)
                      | ...+....  .|        ..++.|++++++++|+|||+|. .                 +++|.++|+.++++..+
T Consensus       298 g~~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~-----------------~~~I~~~~~~~G~v~~~  360 (409)
T 3hrp_A          298 GECEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFK-----------------GYCLRKLDILDGYVSTV  360 (409)
T ss_dssp             CCEEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTT-----------------TCEEEEEETTTTEEEEE
T ss_pred             CCEEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCC-----------------CCEEEEEECCCCEEEEE
Confidence            7 55554321  11        2378899999999999999997 5                 57999999556888776


Q ss_pred             cCC---------------CCCcceEEEcCCCCEEEEEeCC
Q 026389          214 LDS---------------LFFANGVALSKDEDYLVVCETF  238 (239)
Q Consensus       214 ~~~---------------l~~pnGia~s~dg~~lyvadt~  238 (239)
                      ...               +..|+||++++|| .|||+|+.
T Consensus       361 ~g~~~~~g~~~g~~~~~~~~~P~giavd~~g-~lyVad~~  399 (409)
T 3hrp_A          361 AGQVDVASQIDGTPLEATFNYPYDICYDGEG-GYWIAEAW  399 (409)
T ss_dssp             EECTTCBSCCCBSTTTCCBSSEEEEEECSSS-EEEEEEST
T ss_pred             eCCCCCCCcCCCChhceEeCCceEEEEcCCC-CEEEEECC
Confidence            643               6789999999996 69999975

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=99.67  E-value=8.4e-16  Score=133.05  Aligned_cols=144  Identities=15%  Similarity=0.155  Sum_probs=104.8

Q ss_pred             cCCcceEEEcC-CCCEEEEe-CCCeEEEEecC-CcEEEeeecc--------CcCccCeEE---cCCCCEEE-EeC-----
Q 026389           76 LNGPEDVCVDR-NGVLYTAT-RDGWIKRLHKN-GTWENWKLIG--------GDTLLGITT---TQENEILV-CDA-----  135 (239)
Q Consensus        76 ~~gPe~ia~d~-~G~ly~~~-~~g~I~~~~~~-G~~~~~~~~~--------~~p~~Gl~~---d~~G~L~v-~d~-----  135 (239)
                      -..||+++||+ +|++|+++ ..++|.+++++ |..+.+....        ..+. ||.+   |++|+||| ++.     
T Consensus        12 ~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~s-Gl~~~~~D~~grL~vv~~~~~af~   90 (334)
T 2p9w_A           12 NLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMS-GLSLLTHDNSKRLFAVMKNAKSFN   90 (334)
T ss_dssp             TCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEE-EEEESSSSSCCEEEEEEEETTTTC
T ss_pred             ccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceee-EEEEeccCCCCcEEEEEccccccc
Confidence            46899999987 78999999 89999999997 4443332111        1467 9999   78999998 452     


Q ss_pred             --------CCCeEEEccC----C-ceEEecc---cC------CccccccccEEEcCCCCEEEEeCCCCcCccccccccee
Q 026389          136 --------DKGLLKVTEE----G-VTVLASH---VN------GSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLE  193 (239)
Q Consensus       136 --------~~g~~~v~~~----g-~~~l~~~---~~------g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e  193 (239)
                              ...++++|.+    | ....+..   .+      |.....+||+++|++|++|++++.              
T Consensus        91 ~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~--------------  156 (334)
T 2p9w_A           91 FADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFAL--------------  156 (334)
T ss_dssp             TTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEE--------------
T ss_pred             ccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCC--------------
Confidence                    2346677733    6 3332221   11      223456999999999999999975              


Q ss_pred             ecCC-ceEEEEeCCCCeEEEec------CCCCCcceEEEcCCCCEEEEEeC
Q 026389          194 AKPH-GKLLKYDPSLNETSILL------DSLFFANGVALSKDEDYLVVCET  237 (239)
Q Consensus       194 ~~~~-g~v~~~d~~~~~~~~~~------~~l~~pnGia~s~dg~~lyvadt  237 (239)
                         . +.|+|+++++..+..+.      .....+|||+++|||++|+++|+
T Consensus       157 ---~~~~I~rV~pdG~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~  204 (334)
T 2p9w_A          157 ---GMPAIARVSADGKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGG  204 (334)
T ss_dssp             ---SSCEEEEECTTSCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESS
T ss_pred             ---CCCeEEEEeCCCCEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcC
Confidence               4 78999999976565442      12345889999999999999987

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.66  E-value=4.5e-15  Score=127.00  Aligned_cols=148  Identities=23%  Similarity=0.355  Sum_probs=112.7

Q ss_pred             cCCcceEEEcCCCCEEEEe-CCCeEEEEecC-CcEEEee-eccCcCccCeEEcCCCCEEEEeCCC-----CeEEEccC-C
Q 026389           76 LNGPEDVCVDRNGVLYTAT-RDGWIKRLHKN-GTWENWK-LIGGDTLLGITTTQENEILVCDADK-----GLLKVTEE-G  146 (239)
Q Consensus        76 ~~gPe~ia~d~~G~ly~~~-~~g~I~~~~~~-G~~~~~~-~~~~~p~~Gl~~d~~G~L~v~d~~~-----g~~~v~~~-g  146 (239)
                      ...|++++|+++|+||+++ .++.|++++.+ ++...+. .....|. +++++++|+||+++...     +++.++.+ +
T Consensus        44 ~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~-~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~  122 (333)
T 2dg1_A           44 GLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPA-AIKIHKDGRLFVCYLGDFKSTGGIFAATENGD  122 (333)
T ss_dssp             CCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEE-EEEECTTSCEEEEECTTSSSCCEEEEECTTSC
T ss_pred             CccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcc-eEEECCCCcEEEEeCCCCCCCceEEEEeCCCC
Confidence            5679999999999999765 78899999975 5555443 3456788 99999999999998765     67778854 4


Q ss_pred             -ceEEecccCCccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecCCCCCcceEEE
Q 026389          147 -VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVAL  225 (239)
Q Consensus       147 -~~~l~~~~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~~l~~pnGia~  225 (239)
                       .+.+....  .....+++++++++|++|+++....           .....++|+++|+++++.+.+...+..|+++++
T Consensus       123 ~~~~~~~~~--~~~~~~~~i~~d~~g~l~v~~~~~~-----------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~  189 (333)
T 2dg1_A          123 NLQDIIEDL--STAYCIDDMVFDSKGGFYFTDFRGY-----------STNPLGGVYYVSPDFRTVTPIIQNISVANGIAL  189 (333)
T ss_dssp             SCEEEECSS--SSCCCEEEEEECTTSCEEEEECCCB-----------TTBCCEEEEEECTTSCCEEEEEEEESSEEEEEE
T ss_pred             EEEEEEccC--ccCCcccceEECCCCCEEEEecccc-----------ccCCCceEEEEeCCCCEEEEeecCCCcccceEE
Confidence             44232211  1235789999999999999986410           012357899999988787777666778999999


Q ss_pred             cCCCCEEEEEeC
Q 026389          226 SKDEDYLVVCET  237 (239)
Q Consensus       226 s~dg~~lyvadt  237 (239)
                      ++||++||++++
T Consensus       190 ~~dg~~l~v~~~  201 (333)
T 2dg1_A          190 STDEKVLWVTET  201 (333)
T ss_dssp             CTTSSEEEEEEG
T ss_pred             CCCCCEEEEEeC
Confidence            999999999875

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.66  E-value=4.5e-15  Score=124.52  Aligned_cols=141  Identities=15%  Similarity=0.258  Sum_probs=108.0

Q ss_pred             CCcCCcceEEEcCCCCEEEEe-CCCeEEEEecCCcEE-Eeeec------cCcCccCeEE-cCCCCEEEEeC--CCCeEEE
Q 026389           74 GILNGPEDVCVDRNGVLYTAT-RDGWIKRLHKNGTWE-NWKLI------GGDTLLGITT-TQENEILVCDA--DKGLLKV  142 (239)
Q Consensus        74 g~~~gPe~ia~d~~G~ly~~~-~~g~I~~~~~~G~~~-~~~~~------~~~p~~Gl~~-d~~G~L~v~d~--~~g~~~v  142 (239)
                      +.+..|.+++++++|++|+++ .+++|.+|+++|+.. .+...      ...|. ++++ +++|+|||++.  ...+..+
T Consensus        27 g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~g~~~~~~~~~~~~~~~~~~p~-~i~~~~~~g~l~v~~~~~~~~i~~~  105 (286)
T 1q7f_A           27 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKEGRFKFQFGECGKRDSQLLYPN-RVAVVRNSGDIIVTERSPTHQIQIY  105 (286)
T ss_dssp             TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTTSCEEEEECCBSSSTTCBSSEE-EEEEETTTTEEEEEECGGGCEEEEE
T ss_pred             CccCCCceEEECCCCCEEEEECCCCEEEEECCCCcEEEEecccCCCcccccCce-EEEEEcCCCeEEEEcCCCCCEEEEE
Confidence            457899999999999999886 789999999888653 33221      24688 9999 58899999996  3455566


Q ss_pred             ccCC--ceEEecccCCccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEec--CCCC
Q 026389          143 TEEG--VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILL--DSLF  218 (239)
Q Consensus       143 ~~~g--~~~l~~~~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~--~~l~  218 (239)
                      +.+|  .+.+.    ...+..|++++++++|++|+++..                 .++|++||+++..+..+.  ..+.
T Consensus       106 d~~g~~~~~~~----~~~~~~~~~i~~~~~g~l~v~~~~-----------------~~~i~~~~~~g~~~~~~~~~~~~~  164 (286)
T 1q7f_A          106 NQYGQFVRKFG----ATILQHPRGVTVDNKGRIIVVECK-----------------VMRVIIFDQNGNVLHKFGCSKHLE  164 (286)
T ss_dssp             CTTSCEEEEEC----TTTCSCEEEEEECTTSCEEEEETT-----------------TTEEEEECTTSCEEEEEECTTTCS
T ss_pred             CCCCcEEEEec----CccCCCceEEEEeCCCCEEEEECC-----------------CCEEEEEcCCCCEEEEeCCCCccC
Confidence            6666  33332    123467999999999999999975                 478999998765555543  4567


Q ss_pred             CcceEEEcCCCCEEEEEeC
Q 026389          219 FANGVALSKDEDYLVVCET  237 (239)
Q Consensus       219 ~pnGia~s~dg~~lyvadt  237 (239)
                      .|++|++++||+ +||+++
T Consensus       165 ~p~~i~~~~~g~-l~v~~~  182 (286)
T 1q7f_A          165 FPNGVVVNDKQE-IFISDN  182 (286)
T ss_dssp             SEEEEEECSSSE-EEEEEG
T ss_pred             CcEEEEECCCCC-EEEEEC
Confidence            899999999987 899875

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=99.66  E-value=3.5e-15  Score=133.03  Aligned_cols=146  Identities=14%  Similarity=0.156  Sum_probs=111.7

Q ss_pred             eEeccCCcCCcceEEEcC-CCCEEEEe-CCCeEEEEecCCcE-EEee-eccCcCccCeEEcC-CCCEEEEeCC--CCeEE
Q 026389           69 TRLGEGILNGPEDVCVDR-NGVLYTAT-RDGWIKRLHKNGTW-ENWK-LIGGDTLLGITTTQ-ENEILVCDAD--KGLLK  141 (239)
Q Consensus        69 ~~l~~g~~~gPe~ia~d~-~G~ly~~~-~~g~I~~~~~~G~~-~~~~-~~~~~p~~Gl~~d~-~G~L~v~d~~--~g~~~  141 (239)
                      +.+....+..|+|||+|. +|+||+++ ..++|.+++.+|+. +.+. .....|. ||++|+ .|.||++|.+  ..+.+
T Consensus       151 ~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~-~iavdp~~g~ly~td~~~~~~I~~  229 (400)
T 3p5b_L          151 DTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPR-AIVVDPVHGFMYWTDWGTPAKIKK  229 (400)
T ss_dssp             EEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEE-EEEEETTTTEEEEEECSSSCCEEE
T ss_pred             eEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcc-eEEEecccCeEEEEeCCCCCEEEE
Confidence            334443478999999997 78999888 67899999998863 3333 3456799 999997 5789999975  34556


Q ss_pred             EccCC--ceEEecccCCccccccccEEEcCC-CCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecC---
Q 026389          142 VTEEG--VTVLASHVNGSRINLADDLIAATD-GSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLD---  215 (239)
Q Consensus       142 v~~~g--~~~l~~~~~g~~~~~pn~l~vd~d-G~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~---  215 (239)
                      ++.+|  .+.+..    ..+..||+|++|++ ++|||+|..                 .++|+++|.++...+++..   
T Consensus       230 ~~~dG~~~~~~~~----~~l~~P~glavd~~~~~lY~aD~~-----------------~~~I~~~d~dG~~~~~~~~~~~  288 (400)
T 3p5b_L          230 GGLNGVDIYSLVT----ENIQWPNGITLDLLSGRLYWVDSK-----------------LHSISSIDVNGGNRKTILEDEK  288 (400)
T ss_dssp             EETTSCSCEEEEC----SSCSCEEEEEEETTTTEEEEEETT-----------------TTEEEEEETTSCCCEEEEECSS
T ss_pred             EeCCCCccEEEEE----CCCCceEEEEEEeCCCEEEEEECC-----------------CCEEEEEeCCCCccEEEEeCCC
Confidence            66777  455543    24678999999975 699999976                 5799999998776666654   


Q ss_pred             CCCCcceEEEcCCCCEEEEEeCC
Q 026389          216 SLFFANGVALSKDEDYLVVCETF  238 (239)
Q Consensus       216 ~l~~pnGia~s~dg~~lyvadt~  238 (239)
                      .+.+|.||++  +++.|||+|+.
T Consensus       289 ~l~~P~gl~v--~~~~lywtd~~  309 (400)
T 3p5b_L          289 RLAHPFSLAV--FEDKVFWTDII  309 (400)
T ss_dssp             TTSSEEEEEE--ETTEEEEEESS
T ss_pred             CCCCCEEEEE--eCCEEEEecCC
Confidence            3789999999  45689999975

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.66  E-value=2.9e-15  Score=129.39  Aligned_cols=156  Identities=15%  Similarity=0.137  Sum_probs=117.4

Q ss_pred             cceEeccCCcCCcceEEEcCC-CCEEEEe-CCCeEEEEecCC-cEEEeeeccCcCccCeEEcCCCCEEEEeCCCCeEEEc
Q 026389           67 SVTRLGEGILNGPEDVCVDRN-GVLYTAT-RDGWIKRLHKNG-TWENWKLIGGDTLLGITTTQENEILVCDADKGLLKVT  143 (239)
Q Consensus        67 ~~~~l~~g~~~gPe~ia~d~~-G~ly~~~-~~g~I~~~~~~G-~~~~~~~~~~~p~~Gl~~d~~G~L~v~d~~~g~~~v~  143 (239)
                      +.+.+.......+|+++|+++ +.+|+.+ .+++|+++++++ +...+ .....+. +++++++|++|++.. .+++.++
T Consensus        39 ~~~~~~~~~~~~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~~-~~~~~v~-~i~~~~dg~l~v~~~-~gl~~~d  115 (326)
T 2ghs_A           39 AGRVLDETPMLLGEGPTFDPASGTAWWFNILERELHELHLASGRKTVH-ALPFMGS-ALAKISDSKQLIASD-DGLFLRD  115 (326)
T ss_dssp             CCEEEECSCCSBEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEEE-ECSSCEE-EEEEEETTEEEEEET-TEEEEEE
T ss_pred             ceEEeeccCCCCCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEEE-ECCCcce-EEEEeCCCeEEEEEC-CCEEEEE
Confidence            467777765677999999985 6788665 788999999865 44443 3346788 999999999999874 5788888


Q ss_pred             -cCC-ceEEecccCCccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecCCCCCcc
Q 026389          144 -EEG-VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFAN  221 (239)
Q Consensus       144 -~~g-~~~l~~~~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~~l~~pn  221 (239)
                       .+| .+.+.....+.+...++++++|++|++|+++....           +....++||+++ + ++++.+..++..||
T Consensus       116 ~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~-----------~~~~~~~l~~~~-~-g~~~~~~~~~~~~~  182 (326)
T 2ghs_A          116 TATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRK-----------AETGAGSIYHVA-K-GKVTKLFADISIPN  182 (326)
T ss_dssp             TTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETT-----------CCTTCEEEEEEE-T-TEEEEEEEEESSEE
T ss_pred             CCCCcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCc-----------CCCCceEEEEEe-C-CcEEEeeCCCcccC
Confidence             466 55554433334456799999999999999875310           012357999999 4 77777766777899


Q ss_pred             eEEEcCCCCEEEEEeCC
Q 026389          222 GVALSKDEDYLVVCETF  238 (239)
Q Consensus       222 Gia~s~dg~~lyvadt~  238 (239)
                      |+++++||+++|++++.
T Consensus       183 ~i~~s~dg~~lyv~~~~  199 (326)
T 2ghs_A          183 SICFSPDGTTGYFVDTK  199 (326)
T ss_dssp             EEEECTTSCEEEEEETT
T ss_pred             CeEEcCCCCEEEEEECC
Confidence            99999999999999864

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.66  E-value=3.7e-15  Score=129.49  Aligned_cols=154  Identities=14%  Similarity=0.184  Sum_probs=108.6

Q ss_pred             ceEeccCCcCCcceEEEcCCCCEEEEe---CCC--eEEEEecCCcEEEeee-------ccCcCccCeEEcCCCCEEEEeC
Q 026389           68 VTRLGEGILNGPEDVCVDRNGVLYTAT---RDG--WIKRLHKNGTWENWKL-------IGGDTLLGITTTQENEILVCDA  135 (239)
Q Consensus        68 ~~~l~~g~~~gPe~ia~d~~G~ly~~~---~~g--~I~~~~~~G~~~~~~~-------~~~~p~~Gl~~d~~G~L~v~d~  135 (239)
                      ++.+.... ..|++|+++++|++|++.   .++  +|++++ +|+...+..       ....|+ |+++|++|+|||+|.
T Consensus         9 ~~~v~~~~-~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~-~g~~~~~p~~~~~~~~~~~~p~-gv~~d~~g~L~v~D~   85 (343)
T 2qe8_A            9 LEVVAELS-LAPGNITLTPDGRLFLSLHQFYQPEMQVAELT-QDGLIPFPPQSGNAIITFDTVL-GIKSDGNGIVWMLDN   85 (343)
T ss_dssp             CEEEEEES-SCEEEEEECTTSCEEEEECGGGCCSCSEEEEE-TTEEEESCCCCSSCCCCCSCEE-EEEECSSSEEEEEEC
T ss_pred             eEEEEEcC-CCcceEEECCCCCEEEEeCCCCCCceEEEEEC-CCCeecCCCcccCcccceeEee-EEEEcCCCcEEEEcC
Confidence            34444432 689999999999999885   234  899998 787654421       235799 999999999999997


Q ss_pred             C------CCeEEEc-cCC--ceEEec-ccCCccccccccEEEcCC-CCEEEEeCCCCcCcccccccceeecCCceEEEEe
Q 026389          136 D------KGLLKVT-EEG--VTVLAS-HVNGSRINLADDLIAATD-GSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYD  204 (239)
Q Consensus       136 ~------~g~~~v~-~~g--~~~l~~-~~~g~~~~~pn~l~vd~d-G~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d  204 (239)
                      .      ..++.++ .+|  .+.+.- .....+..++|++++|++ |.+|++|.+..              ..+.|++||
T Consensus        86 g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~--------------~~~~i~v~d  151 (343)
T 2qe8_A           86 GNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPD--------------DKAALIRVD  151 (343)
T ss_dssp             HHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSG--------------GGCEEEEEE
T ss_pred             CCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccC--------------CCCeEEEEE
Confidence            5      4677778 456  333321 111234467899999975 79999997411              136788888


Q ss_pred             CCCCeEEEecCC------------------------------CCCcceEEEcCCCCEEEEEeCC
Q 026389          205 PSLNETSILLDS------------------------------LFFANGVALSKDEDYLVVCETF  238 (239)
Q Consensus       205 ~~~~~~~~~~~~------------------------------l~~pnGia~s~dg~~lyvadt~  238 (239)
                      +++++...+..+                              ...+|||++++||++||++++.
T Consensus       152 ~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~  215 (343)
T 2qe8_A          152 LQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMH  215 (343)
T ss_dssp             TTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESS
T ss_pred             CCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCC
Confidence            776665554322                              1247999999999999999864

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=99.65  E-value=6.1e-15  Score=141.81  Aligned_cols=142  Identities=14%  Similarity=0.125  Sum_probs=110.8

Q ss_pred             cCCcceEEEcC-CCCEEEEe-CCCeEEEEecCCc-----EEEeee-ccCcCccCeEEcCCC-CEEEEeCCCCeEEEc-cC
Q 026389           76 LNGPEDVCVDR-NGVLYTAT-RDGWIKRLHKNGT-----WENWKL-IGGDTLLGITTTQEN-EILVCDADKGLLKVT-EE  145 (239)
Q Consensus        76 ~~gPe~ia~d~-~G~ly~~~-~~g~I~~~~~~G~-----~~~~~~-~~~~p~~Gl~~d~~G-~L~v~d~~~g~~~v~-~~  145 (239)
                      +..|.+|++|. +++||+++ ..++|++++.+|.     .+.+.. ....|. ||++|..+ +|||+|...+.+.+. .+
T Consensus       423 ~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~-GLAvD~~~~~LY~tD~~~~~I~v~~ld  501 (791)
T 3m0c_C          423 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD-GLAVDWIHSNIYWTDSVLGTVSVADTK  501 (791)
T ss_dssp             CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCC-EEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             CCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcc-eeeeeecCCcEEEEecCCCeEEEEeCC
Confidence            67899999997 78999888 6789999998762     233333 567899 99999665 899999988777665 67


Q ss_pred             C--ceEEecccCCccccccccEEEcCC-CCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEec-CCCCCcc
Q 026389          146 G--VTVLASHVNGSRINLADDLIAATD-GSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILL-DSLFFAN  221 (239)
Q Consensus       146 g--~~~l~~~~~g~~~~~pn~l~vd~d-G~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~-~~l~~pn  221 (239)
                      |  .+++..    ..+..|++|+||+. |+|||||...                .++|++++.++...++++ .++..|+
T Consensus       502 G~~~~~l~~----~~l~~P~gIaVDp~~g~LYwtD~g~----------------~~~I~~~~~dG~~~~~lv~~~l~~P~  561 (791)
T 3m0c_C          502 GVKRKTLFR----ENGSKPRAIVVDPVHGFMYWTDWGT----------------PAKIKKGGLNGVDIYSLVTENIQWPN  561 (791)
T ss_dssp             SSSEEEEEE----CTTCCEEEEEEETTTTEEEEEECSS----------------SCEEEEEETTSCCEEEEECSSCSCEE
T ss_pred             CCeEEEEEe----CCCCCcceEEEecCCCCEEEecCCC----------------CCeEEEEecCCCceEEEEeCCCCCce
Confidence            7  455543    23567999999986 7999999651                378999999977666655 5789999


Q ss_pred             eEEEcCCCCEEEEEeCC
Q 026389          222 GVALSKDEDYLVVCETF  238 (239)
Q Consensus       222 Gia~s~dg~~lyvadt~  238 (239)
                      ||+++++++.|||+|+.
T Consensus       562 GLavD~~~~~LYwaD~~  578 (791)
T 3m0c_C          562 GITLDLLSGRLYWVDSK  578 (791)
T ss_dssp             EEEEETTTTEEEEEETT
T ss_pred             EEEEecCCCeEEEEeCC
Confidence            99999999999999974

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=99.65  E-value=1.2e-14  Score=127.29  Aligned_cols=168  Identities=17%  Similarity=0.231  Sum_probs=119.4

Q ss_pred             ccccceEeccCCcCCcceEEEcCCCCEEEEeC-CCeEEEEecC-CcEEEee-------eccCcCccCeEEcC----CCCE
Q 026389           64 DIQSVTRLGEGILNGPEDVCVDRNGVLYTATR-DGWIKRLHKN-GTWENWK-------LIGGDTLLGITTTQ----ENEI  130 (239)
Q Consensus        64 ~l~~~~~l~~g~~~gPe~ia~d~~G~ly~~~~-~g~I~~~~~~-G~~~~~~-------~~~~~p~~Gl~~d~----~G~L  130 (239)
                      ....++.+.++ +..|.+|++.++|++|++.. .|+|++++.+ |+.+.+.       ...+.++ ||++++    +|.|
T Consensus        20 ~~~~~~~va~g-L~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~Gll-Gia~~Pdf~~~g~l   97 (347)
T 3das_A           20 SVKVLRTVATG-LNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLL-GIALSPDYASDHMV   97 (347)
T ss_dssp             CEEEEEEEECC-CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEE-EEEECTTHHHHCEE
T ss_pred             CCceeEEeecC-CCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCce-eeEeccccccCCEE
Confidence            34567888887 89999999999999999996 8999999864 5544332       2345688 999997    4789


Q ss_pred             EEEeC---CCCeEEEc-cC-----C----ceEEecccCCccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCC
Q 026389          131 LVCDA---DKGLLKVT-EE-----G----VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPH  197 (239)
Q Consensus       131 ~v~d~---~~g~~~v~-~~-----g----~~~l~~~~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~  197 (239)
                      ||+.+   ..+++++. .+     .    .+++.........++...|++++||.|||+.......  ....+  .....
T Consensus        98 Yv~yt~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~--~~~qd--~~~~~  173 (347)
T 3das_A           98 YAYFTSASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDT--GLSQD--RKSLG  173 (347)
T ss_dssp             EEEEECSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCG--GGTTC--TTCST
T ss_pred             EEEEecCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCC--ccccC--CCCCC
Confidence            99853   34566664 22     1    3444433333345678899999999999996442110  00000  01236


Q ss_pred             ceEEEEeCCCC--------eEEEecCCCCCcceEEEcCCCCEEEEEeCC
Q 026389          198 GKLLKYDPSLN--------ETSILLDSLFFANGVALSKDEDYLVVCETF  238 (239)
Q Consensus       198 g~v~~~d~~~~--------~~~~~~~~l~~pnGia~s~dg~~lyvadt~  238 (239)
                      |+|+|+++++.        ..+++..++.+|.|++|+++|+ ||++|.+
T Consensus       174 G~IlRi~~dG~ip~~nPf~~~~i~a~G~RNp~Gla~dp~G~-L~~~d~g  221 (347)
T 3das_A          174 GKILRMTPDGEPAPGNPFPGSPVYSYGHRNVQGLAWDDKQR-LFASEFG  221 (347)
T ss_dssp             TCEEEECTTSSBCTTCSSTTCCEEEBCCSBCCEEEECTTCC-EEEEECC
T ss_pred             CEEEEEeCCCCccCCCCCCCCeEEeeCCCCcceEEECCCCC-EEEEecC
Confidence            99999999865        4567888999999999999876 8999875

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.64  E-value=1.2e-14  Score=121.80  Aligned_cols=145  Identities=19%  Similarity=0.233  Sum_probs=108.1

Q ss_pred             eccCCcCCcceEEEcCCCCEEEEe-CCCeEEEEecCCcEEE-ee--eccCcCccCeEEcCCCCEEEEeCCCCeE-EEccC
Q 026389           71 LGEGILNGPEDVCVDRNGVLYTAT-RDGWIKRLHKNGTWEN-WK--LIGGDTLLGITTTQENEILVCDADKGLL-KVTEE  145 (239)
Q Consensus        71 l~~g~~~gPe~ia~d~~G~ly~~~-~~g~I~~~~~~G~~~~-~~--~~~~~p~~Gl~~d~~G~L~v~d~~~g~~-~v~~~  145 (239)
                      +..+....|.+++++++|++|+++ .+++|++++++|+... +.  .....|. +++++++|++||++...+.+ .++.+
T Consensus       115 ~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~p~-~i~~~~~g~l~v~~~~~~~i~~~~~~  193 (286)
T 1q7f_A          115 FGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGNVLHKFGCSKHLEFPN-GVVVNDKQEIFISDNRAHCVKVFNYE  193 (286)
T ss_dssp             ECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSCEEEEEECTTTCSSEE-EEEECSSSEEEEEEGGGTEEEEEETT
T ss_pred             ecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCCCCEEEEeCCCCccCCcE-EEEECCCCCEEEEECCCCEEEEEcCC
Confidence            333445689999999999999887 6789999998887533 32  1235689 99999999999999765544 55566


Q ss_pred             C--ceEEecccCCccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCc-eEEEEeCCCCeEEEecCC--CCCc
Q 026389          146 G--VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHG-KLLKYDPSLNETSILLDS--LFFA  220 (239)
Q Consensus       146 g--~~~l~~~~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g-~v~~~d~~~~~~~~~~~~--l~~p  220 (239)
                      |  ...+..  .+ .+..|+++++|++|++|+++..                 ++ +|.+||+++..+..+...  ...|
T Consensus       194 g~~~~~~~~--~g-~~~~p~~i~~d~~G~l~v~~~~-----------------~~~~i~~~~~~g~~~~~~~~~~~~~~~  253 (286)
T 1q7f_A          194 GQYLRQIGG--EG-ITNYPIGVGINSNGEILIADNH-----------------NNFNLTIFTQDGQLISALESKVKHAQC  253 (286)
T ss_dssp             CCEEEEESC--TT-TSCSEEEEEECTTCCEEEEECS-----------------SSCEEEEECTTSCEEEEEEESSCCSCE
T ss_pred             CCEEEEEcc--CC-ccCCCcEEEECCCCCEEEEeCC-----------------CCEEEEEECCCCCEEEEEcccCCCCcc
Confidence            6  333321  11 2467999999999999999965                 34 899999986666665443  3458


Q ss_pred             ceEEEcCCCCEEEEEeC
Q 026389          221 NGVALSKDEDYLVVCET  237 (239)
Q Consensus       221 nGia~s~dg~~lyvadt  237 (239)
                      .++++++||+ |||++.
T Consensus       254 ~~i~~~~~g~-l~vs~~  269 (286)
T 1q7f_A          254 FDVALMDDGS-VVLASK  269 (286)
T ss_dssp             EEEEEETTTE-EEEEET
T ss_pred             eeEEECCCCc-EEEECC
Confidence            8999999996 888864

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.64  E-value=7.4e-15  Score=121.69  Aligned_cols=140  Identities=16%  Similarity=0.273  Sum_probs=106.2

Q ss_pred             cCCcceEEEcCCCCEEEEeCCCeEEEEecCCcE-EEeee-ccCcCccCeEEcCCCCEEEEeCCCCe-EEEccCC-ceEEe
Q 026389           76 LNGPEDVCVDRNGVLYTATRDGWIKRLHKNGTW-ENWKL-IGGDTLLGITTTQENEILVCDADKGL-LKVTEEG-VTVLA  151 (239)
Q Consensus        76 ~~gPe~ia~d~~G~ly~~~~~g~I~~~~~~G~~-~~~~~-~~~~p~~Gl~~d~~G~L~v~d~~~g~-~~v~~~g-~~~l~  151 (239)
                      ...|.+|+++++|+||+++.+++|+++++++.. ..+.. ....|. +++++++|+|||++...+. ..++... .....
T Consensus        66 ~~~p~~i~~~~~g~l~v~~~~~~i~~~d~~~~~~~~~~~~~~~~p~-~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~  144 (270)
T 1rwi_B           66 LYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQTVLPFDGLNYPE-GLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVL  144 (270)
T ss_dssp             CCSCCCEEECTTCCEEEEETTTEEEEECTTCSCCEECCCCSCSSEE-EEEECTTCCEEEEEGGGTEEEEECTTCCSCEEC
T ss_pred             cCCcceeEECCCCCEEEEcCCCEEEEEeCCCceEeeeecCCcCCCc-ceEECCCCCEEEEECCCCEEEEEECCCceeEee
Confidence            568999999999999998888899999987754 32222 235789 9999999999999976554 4554333 32222


Q ss_pred             cccCCccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEe-cCCCCCcceEEEcCCCC
Q 026389          152 SHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSIL-LDSLFFANGVALSKDED  230 (239)
Q Consensus       152 ~~~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~-~~~l~~pnGia~s~dg~  230 (239)
                      .   ...+..|++++++++|++|+++..                 .++|++||++++..... ..++..|++|+++++| 
T Consensus       145 ~---~~~~~~p~~i~~~~~g~l~v~~~~-----------------~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g-  203 (270)
T 1rwi_B          145 P---FTGLNDPDGVAVDNSGNVYVTDTD-----------------NNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAG-  203 (270)
T ss_dssp             C---CCSCCSCCCEEECTTCCEEEEEGG-----------------GTEEEEECTTTCCEEECCCSSCCSEEEEEECTTC-
T ss_pred             c---cccCCCceeEEEeCCCCEEEEECC-----------------CCEEEEEecCCCceEeecccCCCCceEEEECCCC-
Confidence            1   123467999999999999999864                 47899999987665543 3456889999999999 


Q ss_pred             EEEEEeC
Q 026389          231 YLVVCET  237 (239)
Q Consensus       231 ~lyvadt  237 (239)
                      .|||++.
T Consensus       204 ~l~v~~~  210 (270)
T 1rwi_B          204 TVYVTEH  210 (270)
T ss_dssp             CEEEEET
T ss_pred             CEEEEEC
Confidence            5899885

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=99.63  E-value=7.5e-15  Score=130.22  Aligned_cols=145  Identities=15%  Similarity=0.138  Sum_probs=109.5

Q ss_pred             EeccCCcCCcceEEEcC-CCCEEEEe-CCCeEEEEecCCcE-EEee-eccCcCccCeEEcC-CCCEEEEeCCC-C-eEEE
Q 026389           70 RLGEGILNGPEDVCVDR-NGVLYTAT-RDGWIKRLHKNGTW-ENWK-LIGGDTLLGITTTQ-ENEILVCDADK-G-LLKV  142 (239)
Q Consensus        70 ~l~~g~~~gPe~ia~d~-~G~ly~~~-~~g~I~~~~~~G~~-~~~~-~~~~~p~~Gl~~d~-~G~L~v~d~~~-g-~~~v  142 (239)
                      .+....+..|+++++|+ +|+||+++ ..++|.+++.+|+. +.+. .....|. ||++|+ +|.||++|... + +.++
T Consensus       152 ~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~-giavdp~~g~ly~td~~~~~~I~r~  230 (386)
T 3v65_B          152 EVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPR-AIALHPMEGTIYWTDWGNTPRIEAS  230 (386)
T ss_dssp             EEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEE-EEEEETTTTEEEEEECSSSCEEEEE
T ss_pred             EEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCc-EEEEEcCCCeEEEeccCCCCEEEEE
Confidence            33333467899999996 78999888 67899999988864 3333 3347899 999996 56899999875 4 4455


Q ss_pred             ccCC--ceEEecccCCccccccccEEEcCC-CCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEe-cCCCC
Q 026389          143 TEEG--VTVLASHVNGSRINLADDLIAATD-GSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSIL-LDSLF  218 (239)
Q Consensus       143 ~~~g--~~~l~~~~~g~~~~~pn~l~vd~d-G~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~-~~~l~  218 (239)
                      +.+|  .+.+..    ..+..||+|++|++ |+|||+|..                 .++|+++|.++...+.+ ..++.
T Consensus       231 ~~dG~~~~~~~~----~~~~~PnGlavd~~~~~lY~aD~~-----------------~~~I~~~d~dG~~~~~~~~~~~~  289 (386)
T 3v65_B          231 SMDGSGRRIIAD----THLFWPNGLTIDYAGRRMYWVDAK-----------------HHVIERANLDGSHRKAVISQGLP  289 (386)
T ss_dssp             ETTSCSCEEEEC----SSCSCEEEEEEEGGGTEEEEEETT-----------------TTEEEEECTTSCSCEEEECSSCS
T ss_pred             eCCCCCcEEEEE----CCCCCeeeEEEeCCCCEEEEEECC-----------------CCEEEEEeCCCCeeEEEEECCCC
Confidence            6777  444443    23678999999964 799999976                 57999999986655444 45788


Q ss_pred             CcceEEEcCCCCEEEEEeCC
Q 026389          219 FANGVALSKDEDYLVVCETF  238 (239)
Q Consensus       219 ~pnGia~s~dg~~lyvadt~  238 (239)
                      +|.||++  +++.|||+|+.
T Consensus       290 ~P~giav--~~~~ly~td~~  307 (386)
T 3v65_B          290 HPFAITV--FEDSLYWTDWH  307 (386)
T ss_dssp             SEEEEEE--ETTEEEEEETT
T ss_pred             CceEEEE--ECCEEEEeeCC
Confidence            9999999  45579999975

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.63  E-value=1.6e-14  Score=119.61  Aligned_cols=142  Identities=20%  Similarity=0.285  Sum_probs=105.6

Q ss_pred             CcCCcceEEEcCCCCEEEEe-CCCeEEEEecCCcEEEe-e-eccCcCccCeEEcCCCCEEEEeCCC-CeEEEccCC-ceE
Q 026389           75 ILNGPEDVCVDRNGVLYTAT-RDGWIKRLHKNGTWENW-K-LIGGDTLLGITTTQENEILVCDADK-GLLKVTEEG-VTV  149 (239)
Q Consensus        75 ~~~gPe~ia~d~~G~ly~~~-~~g~I~~~~~~G~~~~~-~-~~~~~p~~Gl~~d~~G~L~v~d~~~-g~~~v~~~g-~~~  149 (239)
                      ....|.+++++++|++|+++ .+++|++++........ . .....|. +++++++|+|||++... ++..++.++ ...
T Consensus       106 ~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~-~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~  184 (270)
T 1rwi_B          106 GLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPD-GVAVDNSGNVYVTDTDNNRVVKLEAESNNQV  184 (270)
T ss_dssp             SCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCC-CEEECTTCCEEEEEGGGTEEEEECTTTCCEE
T ss_pred             CcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCce-eEEEeCCCCEEEEECCCCEEEEEecCCCceE
Confidence            35679999999999999987 67899999754322221 1 2234789 99999999999999765 455666555 322


Q ss_pred             EecccCCccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEec-CCCCCcceEEEcCC
Q 026389          150 LASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILL-DSLFFANGVALSKD  228 (239)
Q Consensus       150 l~~~~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~-~~l~~pnGia~s~d  228 (239)
                      ... .  ..+..|++++++++|++|+++..                 .++|++||+++....... .++..|.+|++++|
T Consensus       185 ~~~-~--~~~~~p~~i~~d~~g~l~v~~~~-----------------~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~  244 (270)
T 1rwi_B          185 VLP-F--TDITAPWGIAVDEAGTVYVTEHN-----------------TNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSD  244 (270)
T ss_dssp             ECC-C--SSCCSEEEEEECTTCCEEEEETT-----------------TSCEEEECTTCSCCEECCCCSCSCEEEEEECTT
T ss_pred             eec-c--cCCCCceEEEECCCCCEEEEECC-----------------CCcEEEEcCCCCcceeeccCCCCCceeEEECCC
Confidence            211 1  22467999999999999999975                 478999999876554443 45678999999999


Q ss_pred             CCEEEEEeCC
Q 026389          229 EDYLVVCETF  238 (239)
Q Consensus       229 g~~lyvadt~  238 (239)
                      |+ |||++..
T Consensus       245 g~-l~v~~~~  253 (270)
T 1rwi_B          245 RT-VYVADRG  253 (270)
T ss_dssp             CC-EEEEEGG
T ss_pred             CC-EEEEECC
Confidence            97 9999863

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=99.63  E-value=6.8e-15  Score=132.42  Aligned_cols=144  Identities=10%  Similarity=0.142  Sum_probs=107.5

Q ss_pred             cCCcceEEEcC-CCCEEEEe-CCCeEEEEecCCcEE-Eeeec--cCcCccCeEEcCCCC-EEEEeCCCCeEE-EccCC--
Q 026389           76 LNGPEDVCVDR-NGVLYTAT-RDGWIKRLHKNGTWE-NWKLI--GGDTLLGITTTQENE-ILVCDADKGLLK-VTEEG--  146 (239)
Q Consensus        76 ~~gPe~ia~d~-~G~ly~~~-~~g~I~~~~~~G~~~-~~~~~--~~~p~~Gl~~d~~G~-L~v~d~~~g~~~-v~~~g--  146 (239)
                      +..|.++++++ +|.||+++ .+++|+++++++... .+...  ...|. ||+++++|+ |||+|...+.+. ++.++  
T Consensus       225 ~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~-gia~~pdG~~lyv~d~~~~~I~~~~~d~~~  303 (430)
T 3tc9_A          225 GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEF-HIQFHPSGNYAYIVVVNQHYILRSDYDWKT  303 (430)
T ss_dssp             CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCE-EEEECTTSSEEEEEETTTTEEEEEEEETTT
T ss_pred             CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcce-eEEEcCCCCEEEEEECCCCEEEEEeCCccc
Confidence            57899999999 89999988 789999999876532 33322  35799 999999998 999998766554 44333  


Q ss_pred             -----ceEEeccc------C----Cccccccc-cEEE--------cCCCCEEEEeCCCCcCcccccccceeecCCceEEE
Q 026389          147 -----VTVLASHV------N----GSRINLAD-DLIA--------ATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLK  202 (239)
Q Consensus       147 -----~~~l~~~~------~----g~~~~~pn-~l~v--------d~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~  202 (239)
                           ...+....      +    ...++.|+ ++++        |++|+|||+|..                 +++|.+
T Consensus       304 ~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~-----------------n~~I~~  366 (430)
T 3tc9_A          304 KRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRE-----------------NHCIRI  366 (430)
T ss_dssp             TEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGG-----------------GTEEEE
T ss_pred             ccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECC-----------------CcEEEE
Confidence                 12233211      1    12578899 8888        467999999975                 579999


Q ss_pred             EeCCCCeEEEecC-----------C-------CCCcceEEEcCCCCEEEEEeCC
Q 026389          203 YDPSLNETSILLD-----------S-------LFFANGVALSKDEDYLVVCETF  238 (239)
Q Consensus       203 ~d~~~~~~~~~~~-----------~-------l~~pnGia~s~dg~~lyvadt~  238 (239)
                      ++++ |++..+..           +       |..|.||++++++..|||+|+.
T Consensus       367 i~~~-G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~  419 (430)
T 3tc9_A          367 LTPQ-GRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRE  419 (430)
T ss_dssp             ECTT-SEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGG
T ss_pred             ECCC-CcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECC
Confidence            9986 67766652           1       5689999999976789999974

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.63  E-value=1.2e-14  Score=123.60  Aligned_cols=141  Identities=13%  Similarity=0.170  Sum_probs=107.4

Q ss_pred             CCcceEEEcCCCCEEEEe------------CCCeEEEEecCCcEEEeeeccCcCccCeEEcCCCC-EEEEeCCCC-eEEE
Q 026389           77 NGPEDVCVDRNGVLYTAT------------RDGWIKRLHKNGTWENWKLIGGDTLLGITTTQENE-ILVCDADKG-LLKV  142 (239)
Q Consensus        77 ~gPe~ia~d~~G~ly~~~------------~~g~I~~~~~~G~~~~~~~~~~~p~~Gl~~d~~G~-L~v~d~~~g-~~~v  142 (239)
                      ..|.++++|++|++|+++            ..++|++++++|+..........|+ |++++++|+ ||+++...+ +..+
T Consensus        98 ~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~pn-gi~~spdg~~lyv~~~~~~~i~~~  176 (297)
T 3g4e_A           98 NRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFDQVDISN-GLDWSLDHKIFYYIDSLSYSVDAF  176 (297)
T ss_dssp             EEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEEEESBEE-EEEECTTSCEEEEEEGGGTEEEEE
T ss_pred             CCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEeecccccc-ceEEcCCCCEEEEecCCCCcEEEE
Confidence            458899999999999876            2368999999888766666677899 999999995 999998655 4444


Q ss_pred             c---cCC-c---eEEecccCCccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEE-Eec
Q 026389          143 T---EEG-V---TVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETS-ILL  214 (239)
Q Consensus       143 ~---~~g-~---~~l~~~~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~-~~~  214 (239)
                      +   .+| .   +++... .. ....|+++++|++|+||+++..                 .++|++||++++++. .+.
T Consensus       177 ~~d~~~G~~~~~~~~~~~-~~-~~~~p~g~~~d~~G~lwva~~~-----------------~~~v~~~d~~tG~~~~~i~  237 (297)
T 3g4e_A          177 DYDLQTGQISNRRSVYKL-EK-EEQIPDGMCIDAEGKLWVACYN-----------------GGRVIRLDPVTGKRLQTVK  237 (297)
T ss_dssp             EECTTTCCEEEEEEEEEC-CG-GGCEEEEEEEBTTSCEEEEEET-----------------TTEEEEECTTTCCEEEEEE
T ss_pred             eccCCCCcccCcEEEEEC-CC-CCCCCCeeEECCCCCEEEEEcC-----------------CCEEEEEcCCCceEEEEEE
Confidence            4   355 2   223221 11 1247999999999999999854                 478999999866654 443


Q ss_pred             CCCCCcceEEEc-CCCCEEEEEeC
Q 026389          215 DSLFFANGVALS-KDEDYLVVCET  237 (239)
Q Consensus       215 ~~l~~pnGia~s-~dg~~lyvadt  237 (239)
                      .....|..++|+ +|+++|||+..
T Consensus       238 ~p~~~~t~~~f~g~d~~~L~vt~~  261 (297)
T 3g4e_A          238 LPVDKTTSCCFGGKNYSEMYVTCA  261 (297)
T ss_dssp             CSSSBEEEEEEESGGGCEEEEEEB
T ss_pred             CCCCCceEEEEeCCCCCEEEEEcC
Confidence            444679999998 89999999875

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=99.62  E-value=1e-14  Score=131.36  Aligned_cols=144  Identities=15%  Similarity=0.235  Sum_probs=107.2

Q ss_pred             cCCcceEEEcC-CCCEEEEe-CCCeEEEEecC-CcE-EEeeecc--CcCccCeEEcCCCC-EEEEeCCCCeEE-EccC--
Q 026389           76 LNGPEDVCVDR-NGVLYTAT-RDGWIKRLHKN-GTW-ENWKLIG--GDTLLGITTTQENE-ILVCDADKGLLK-VTEE--  145 (239)
Q Consensus        76 ~~gPe~ia~d~-~G~ly~~~-~~g~I~~~~~~-G~~-~~~~~~~--~~p~~Gl~~d~~G~-L~v~d~~~g~~~-v~~~--  145 (239)
                      +..|.++++|+ +|+||+++ .+++|++++++ |+. +.+...+  ..+. +|+++++|+ |||+|...+.++ ++.+  
T Consensus       227 ~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~-~ia~dpdG~~LYvad~~~~~I~~~~~d~~  305 (433)
T 4hw6_A          227 ARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNF-HIVWHPTGDWAYIIYNGKHCIYRVDYNRE  305 (433)
T ss_dssp             CSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCE-EEEECTTSSEEEEEETTTTEEEEEEBCTT
T ss_pred             cCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcc-cEEEeCCCCEEEEEeCCCCEEEEEeCCCC
Confidence            57899999999 89999988 77899999986 765 3333332  3456 799999997 999998866554 4433  


Q ss_pred             -C-c---eEEeccc------CC----ccccccccEEE---------cCCCCEEEEeCCCCcCcccccccceeecCCceEE
Q 026389          146 -G-V---TVLASHV------NG----SRINLADDLIA---------ATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLL  201 (239)
Q Consensus       146 -g-~---~~l~~~~------~g----~~~~~pn~l~v---------d~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~  201 (239)
                       + .   .++....      +|    ..|+.|+++++         +++|+|||+|..                 +++|.
T Consensus       306 ~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~-----------------n~~I~  368 (433)
T 4hw6_A          306 TGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRD-----------------SHTVR  368 (433)
T ss_dssp             TCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETT-----------------TTEEE
T ss_pred             CcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECC-----------------CCEEE
Confidence             3 2   2333221      11    25788999999         899999999976                 57999


Q ss_pred             EEeCCCCeEEEecC-----------C-------CCCcceEEEcCCCCEEEEEeCC
Q 026389          202 KYDPSLNETSILLD-----------S-------LFFANGVALSKDEDYLVVCETF  238 (239)
Q Consensus       202 ~~d~~~~~~~~~~~-----------~-------l~~pnGia~s~dg~~lyvadt~  238 (239)
                      +++++ |++..++.           +       +..|.|||+++++..|||+|+.
T Consensus       369 ~~~~~-G~v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~  422 (433)
T 4hw6_A          369 VLTPE-GRVTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCD  422 (433)
T ss_dssp             EECTT-SEEEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGG
T ss_pred             EECCC-CCEEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCC
Confidence            99985 67766542           1       5679999999555569999974

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=99.61  E-value=1.9e-14  Score=138.47  Aligned_cols=145  Identities=14%  Similarity=0.167  Sum_probs=109.3

Q ss_pred             EeccCCcCCcceEEEcC-CCCEEEEe-CCCeEEEEecCCcE-EEee-eccCcCccCeEEcCC-CCEEEEeCCC-CeE-EE
Q 026389           70 RLGEGILNGPEDVCVDR-NGVLYTAT-RDGWIKRLHKNGTW-ENWK-LIGGDTLLGITTTQE-NEILVCDADK-GLL-KV  142 (239)
Q Consensus        70 ~l~~g~~~gPe~ia~d~-~G~ly~~~-~~g~I~~~~~~G~~-~~~~-~~~~~p~~Gl~~d~~-G~L~v~d~~~-g~~-~v  142 (239)
                      .+....+..|+|||+|. .++||+++ ..++|.+++.+|+. +++. .....|. ||++|+. |+|||+|.+. +.+ ++
T Consensus       464 ~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~-gIaVDp~~g~LYwtD~g~~~~I~~~  542 (791)
T 3m0c_C          464 TVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPR-AIVVDPVHGFMYWTDWGTPAKIKKG  542 (791)
T ss_dssp             EEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEE-EEEEETTTTEEEEEECSSSCEEEEE
T ss_pred             EEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcc-eEEEecCCCCEEEecCCCCCeEEEE
Confidence            33443478999999997 56899888 77899999998864 3333 3456799 9999975 7999999764 444 45


Q ss_pred             ccCC--ceEEecccCCccccccccEEEcC-CCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecC---C
Q 026389          143 TEEG--VTVLASHVNGSRINLADDLIAAT-DGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLD---S  216 (239)
Q Consensus       143 ~~~g--~~~l~~~~~g~~~~~pn~l~vd~-dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~---~  216 (239)
                      +.+|  .++++.    ..+..|++|++|+ +|+|||+|..                 .++|.+++.++...++++.   .
T Consensus       543 ~~dG~~~~~lv~----~~l~~P~GLavD~~~~~LYwaD~~-----------------~~~I~~~d~dG~~~~~v~~~~~~  601 (791)
T 3m0c_C          543 GLNGVDIYSLVT----ENIQWPNGITLDLLSGRLYWVDSK-----------------LHSISSIDVNGGNRKTILEDEKR  601 (791)
T ss_dssp             ETTSCCEEEEEC----SSCSCEEEEEEETTTTEEEEEETT-----------------TTEEEEEETTSCSCEEEEECTTT
T ss_pred             ecCCCceEEEEe----CCCCCceEEEEecCCCeEEEEeCC-----------------CCcEEEEecCCCceEEEecCCCc
Confidence            5677  444543    2467899999996 5799999976                 4789999998777766654   3


Q ss_pred             CCCcceEEEcCCCCEEEEEeCC
Q 026389          217 LFFANGVALSKDEDYLVVCETF  238 (239)
Q Consensus       217 l~~pnGia~s~dg~~lyvadt~  238 (239)
                      +.+|.||++  ++++|||+|+.
T Consensus       602 l~~P~glav--~~~~lYwtD~~  621 (791)
T 3m0c_C          602 LAHPFSLAV--FEDKVFWTDII  621 (791)
T ss_dssp             TSSEEEEEE--ETTEEEEEETT
T ss_pred             cCCCCEEEE--eCCEEEEEECC
Confidence            667777877  45689999975

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=99.60  E-value=2.3e-14  Score=134.74  Aligned_cols=144  Identities=16%  Similarity=0.177  Sum_probs=112.5

Q ss_pred             CcCCcceEEEcC-CCCEEEEe-CCCeEEEEecCCcE--EEeee------ccCcCccCeEEcCCC-CEEEEeCCCCeEEEc
Q 026389           75 ILNGPEDVCVDR-NGVLYTAT-RDGWIKRLHKNGTW--ENWKL------IGGDTLLGITTTQEN-EILVCDADKGLLKVT  143 (239)
Q Consensus        75 ~~~gPe~ia~d~-~G~ly~~~-~~g~I~~~~~~G~~--~~~~~------~~~~p~~Gl~~d~~G-~L~v~d~~~g~~~v~  143 (239)
                      .+..+.+|++|+ ++.||+++ ..++|+|++.+|+.  +.+..      ....|. ||++|..+ +||++|...+.+.+.
T Consensus       338 ~~~~~~~ld~d~~~~~iy~sD~~~~~I~r~~~~g~~~~~v~~~~~~~~~~~~~p~-glAvD~~~~nLY~td~~~~~I~v~  416 (628)
T 4a0p_A          338 SLRNVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQGFTVVVSSVPSQNLEIQPY-DLSIDIYSRYIYWTCEATNVINVT  416 (628)
T ss_dssp             TCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC--------CCCEE-EEEEETTTTEEEEEETTTTEEEEE
T ss_pred             hcCCceEEEEecCCCeEEEEecCcceEEEEEcCCCCceEEEEcccccccccCCcc-eEEeeccCCeEEEEcCCCCEEEEE
Confidence            356788899997 78999887 78999999988753  23322      345899 99999874 799999998888876


Q ss_pred             -cCC--ceEEecccCCccccccccEEEcC-CCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEec-CCCC
Q 026389          144 -EEG--VTVLASHVNGSRINLADDLIAAT-DGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILL-DSLF  218 (239)
Q Consensus       144 -~~g--~~~l~~~~~g~~~~~pn~l~vd~-dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~-~~l~  218 (239)
                       .+|  .+++...    .+..|++|++|| +|.+||||...               ..++|+++++++...+.+. .++.
T Consensus       417 ~~~G~~~~~l~~~----~l~~Pr~iavdp~~g~ly~tD~g~---------------~~~~I~r~~~dG~~~~~l~~~~l~  477 (628)
T 4a0p_A          417 RLDGRSVGVVLKG----EQDRPRAVVVNPEKGYMYFTNLQE---------------RSPKIERAALDGTEREVLFFSGLS  477 (628)
T ss_dssp             ETTSCEEEEEEEC----TTCCEEEEEEETTTTEEEEEEEET---------------TEEEEEEEETTSCSCEEEECSSCS
T ss_pred             ECCCCeEEEEEeC----CCCceeeEEEecCCCeEEEeecCC---------------CCCeEEEEeCCCCCcEEEEeccCC
Confidence             677  4455432    356799999999 79999999641               1138999999977666665 4799


Q ss_pred             CcceEEEcCCCCEEEEEeCC
Q 026389          219 FANGVALSKDEDYLVVCETF  238 (239)
Q Consensus       219 ~pnGia~s~dg~~lyvadt~  238 (239)
                      .||||+++++++.|||+|+.
T Consensus       478 ~P~gla~D~~~~~LYw~D~~  497 (628)
T 4a0p_A          478 KPIALALDSRLGKLFWADSD  497 (628)
T ss_dssp             CEEEEEEETTTTEEEEEETT
T ss_pred             CccEEEEeCCCCEEEEEeCC
Confidence            99999999999999999985

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=99.59  E-value=2.5e-14  Score=129.69  Aligned_cols=169  Identities=15%  Similarity=0.136  Sum_probs=117.6

Q ss_pred             cceEeccCCcCCcceEEEcCCCCEEEEeCCC-eEEEEec-CCcEEEeee---------ccCcCccCeEEcC----CCCEE
Q 026389           67 SVTRLGEGILNGPEDVCVDRNGVLYTATRDG-WIKRLHK-NGTWENWKL---------IGGDTLLGITTTQ----ENEIL  131 (239)
Q Consensus        67 ~~~~l~~g~~~gPe~ia~d~~G~ly~~~~~g-~I~~~~~-~G~~~~~~~---------~~~~p~~Gl~~d~----~G~L~  131 (239)
                      +++.+..+ +..|.+|+++++|+||++...+ +|++++. +|+.+.+..         ..+.++ ||++++    +|.||
T Consensus        18 ~~~~~a~~-l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gll-gia~~Pdf~~~g~lY   95 (454)
T 1cru_A           18 DKKVILSN-LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLL-GFAFHPDFKNNPYIY   95 (454)
T ss_dssp             CEEEEECC-CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEE-EEEECTTTTTSCEEE
T ss_pred             EEEEEECC-CCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCcee-EEEECCCcCcCCEEE
Confidence            45677766 8899999999999999999765 8999986 476554432         134567 999998    67999


Q ss_pred             EEeCC-------------CCeEEEc-c--CC----ceEEecccCCccccccccEEEcCCCCEEEEeCCCCcCcccccc--
Q 026389          132 VCDAD-------------KGLLKVT-E--EG----VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGL--  189 (239)
Q Consensus       132 v~d~~-------------~g~~~v~-~--~g----~~~l~~~~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~--  189 (239)
                      |+++.             ..++++. .  ++    .+++.........+++++|++++||.|||+.............  
T Consensus        96 v~~s~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd~~~~~~~~~~~~  175 (454)
T 1cru_A           96 ISGTFKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGDQGRNQLAYLFLP  175 (454)
T ss_dssp             EEEEEECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECCTTTTSGGGTTSC
T ss_pred             EEEeccccCCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECCCCCCCccccccc
Confidence            99853             3466665 2  22    2444443333345679999999999999996542110000000  


Q ss_pred             -------------cceeecCCceEEEEeCCCC-----------eEEEecCCCCCcceEEEcCCCCEEEEEeCC
Q 026389          190 -------------DLLEAKPHGKLLKYDPSLN-----------ETSILLDSLFFANGVALSKDEDYLVVCETF  238 (239)
Q Consensus       190 -------------~~~e~~~~g~v~~~d~~~~-----------~~~~~~~~l~~pnGia~s~dg~~lyvadt~  238 (239)
                                   ..-.....|+|+|+++++.           ..+++..++.+|.|++|+++|+ ||++|.+
T Consensus       176 ~~~~~~p~~~~~~aq~~~~~~G~IlRi~~dG~ip~~Npf~~~~~~ei~a~G~RNp~gla~dp~G~-L~~~d~g  247 (454)
T 1cru_A          176 NQAQHTPTQQELNGKDYHTYMGKVLRLNLDGSIPKDNPSFNGVVSHIYTLGHRNPQGLAFTPNGK-LLQSEQG  247 (454)
T ss_dssp             CCTTCCCCHHHHHTTCCTTCSSEEEEECTTSCCCTTCCEETTEECSEEEBCCSEEEEEEECTTSC-EEEEEEC
T ss_pred             cccccccccccccccCCCCCCeeEEEEeCCCCCCCCCCCCCCCcceEEEECCCCcceEEECCCCC-EEEEecC
Confidence                         0000123699999999865           4577888999999999999876 8999865

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=99.59  E-value=1.2e-14  Score=127.49  Aligned_cols=166  Identities=13%  Similarity=0.145  Sum_probs=115.5

Q ss_pred             cceEeccCCcCCcceEEEcCCCC-EEEEeCCCeEEEEecCCcEEE-ee-------eccCcCccCeEEcC----CCCEEEE
Q 026389           67 SVTRLGEGILNGPEDVCVDRNGV-LYTATRDGWIKRLHKNGTWEN-WK-------LIGGDTLLGITTTQ----ENEILVC  133 (239)
Q Consensus        67 ~~~~l~~g~~~gPe~ia~d~~G~-ly~~~~~g~I~~~~~~G~~~~-~~-------~~~~~p~~Gl~~d~----~G~L~v~  133 (239)
                      +++.+..+ +..|.+|+++++|+ ||++...|+|++++.+|+... +.       ...+.++ ||++++    +|.|||+
T Consensus         9 ~~~~va~~-l~~P~~i~~~pdG~~l~V~e~~G~i~~~~~~g~~~~~~~~~~~v~~~g~~g~~-gia~~pdf~~~g~lYv~   86 (353)
T 2g8s_A            9 NVEVLQDK-LDHPWALAFLPDNHGMLITLRGGELRHWQAGKGLSAPLSGVPDVWAHGQGGLL-DVVLAPDFAQSRRIWLS   86 (353)
T ss_dssp             EEEEEEEE-ESSEEEEEECSTTCCEEEEETTTEEEEEETTTEECCCCBSCCCCCCSTTCSEE-EEEECTTHHHHCEEEEE
T ss_pred             EEEEEECC-CCCcEEEEEcCCCCEEEEEeCCceEEEEeCCCceeeEecCCcccccCCCCCce-eEEECCCCCCCCEEEEE
Confidence            35666665 88999999999999 999998999999998876421 11       1234578 999998    5899999


Q ss_pred             eCC--------CCeEEEc-c-C-C----ceEEecccCC--ccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecC
Q 026389          134 DAD--------KGLLKVT-E-E-G----VTVLASHVNG--SRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKP  196 (239)
Q Consensus       134 d~~--------~g~~~v~-~-~-g----~~~l~~~~~g--~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~  196 (239)
                      +..        ..+.+++ . + +    .+++......  ...+++++|++++||.||++......  .....+  ....
T Consensus        87 ~~~~~~~g~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~--~~~~q~--~~~~  162 (353)
T 2g8s_A           87 YSEVGDDGKAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQ--RPTAQD--LDKL  162 (353)
T ss_dssp             EEEECSSSCEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTC--GGGGGC--TTSC
T ss_pred             EeCCCCCCCceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCC--CCccCC--CCCC
Confidence            754        2355554 2 2 2    2334333221  23456899999999999999755211  000000  0123


Q ss_pred             CceEEEEeCCCC-------------eEEEecCCCCCcceEEEcCCCCEEEEEeCC
Q 026389          197 HGKLLKYDPSLN-------------ETSILLDSLFFANGVALSKDEDYLVVCETF  238 (239)
Q Consensus       197 ~g~v~~~d~~~~-------------~~~~~~~~l~~pnGia~s~dg~~lyvadt~  238 (239)
                      .|+|+|+++++.             ..+++..++.+|.|++|+++...||++|.+
T Consensus       163 ~g~I~ri~~dG~~p~~npf~~~~~~~~~i~a~G~rnp~gl~~d~~~g~l~~~d~g  217 (353)
T 2g8s_A          163 QGKLVRLTDQGEIPDDNPFIKESGVRAEIWSYGIRNPQGMAMNPWSNALWLNEHG  217 (353)
T ss_dssp             TTEEEEEETTSCCCTTCTTTTSTTSCTTEEEECCSEEEEEEEETTTTEEEEEEEC
T ss_pred             CeEEEEECCCCCCCCCCCCcCCCCCCccEEEEcCcCccceEEECCCCCEEEEecC
Confidence            589999999854             456677889999999999955569999875

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.57  E-value=1.8e-13  Score=118.16  Aligned_cols=148  Identities=12%  Similarity=0.050  Sum_probs=106.1

Q ss_pred             cCCcceEEEcCCCCEEEEe-CCCeEEEEecC-CcEEEeeeccC------cCccCeEEcCCCCEEEEeC--CCCeEEEc-c
Q 026389           76 LNGPEDVCVDRNGVLYTAT-RDGWIKRLHKN-GTWENWKLIGG------DTLLGITTTQENEILVCDA--DKGLLKVT-E  144 (239)
Q Consensus        76 ~~gPe~ia~d~~G~ly~~~-~~g~I~~~~~~-G~~~~~~~~~~------~p~~Gl~~d~~G~L~v~d~--~~g~~~v~-~  144 (239)
                      ...|++++++++|++|+++ .+++|.++|.. +++......+.      .|. +|++ .+++|||++.  ...+..+| .
T Consensus        83 ~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~-~i~~-~~~~lyv~~~~~~~~v~viD~~  160 (328)
T 3dsm_A           83 FTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTE-QMVQ-YGKYVYVNCWSYQNRILKIDTE  160 (328)
T ss_dssp             CSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCC-CEEE-ETTEEEEEECTTCCEEEEEETT
T ss_pred             CCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcc-eEEE-ECCEEEEEcCCCCCEEEEEECC
Confidence            4789999998889999998 88999999974 55543344455      899 9999 5779999996  34455566 4


Q ss_pred             CC-ceEEecccCCccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecC--CCCCcc
Q 026389          145 EG-VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLD--SLFFAN  221 (239)
Q Consensus       145 ~g-~~~l~~~~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~--~l~~pn  221 (239)
                      ++ +.....  .+   ..|++++++++|++|+++... +....      .....++|+++|++++++.....  ....|+
T Consensus       161 t~~~~~~i~--~g---~~p~~i~~~~dG~l~v~~~~~-~~~~~------~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~  228 (328)
T 3dsm_A          161 TDKVVDELT--IG---IQPTSLVMDKYNKMWTITDGG-YEGSP------YGYEAPSLYRIDAETFTVEKQFKFKLGDWPS  228 (328)
T ss_dssp             TTEEEEEEE--CS---SCBCCCEECTTSEEEEEBCCB-CTTCS------SCBCCCEEEEEETTTTEEEEEEECCTTCCCE
T ss_pred             CCeEEEEEE--cC---CCccceEEcCCCCEEEEECCC-ccCCc------cccCCceEEEEECCCCeEEEEEecCCCCCce
Confidence            55 222211  12   358999999999999998652 10000      01124799999999888764332  234799


Q ss_pred             eEEEcCCCCEEEEEeC
Q 026389          222 GVALSKDEDYLVVCET  237 (239)
Q Consensus       222 Gia~s~dg~~lyvadt  237 (239)
                      +++++||+++||+++.
T Consensus       229 ~la~~~d~~~lyv~~~  244 (328)
T 3dsm_A          229 EVQLNGTRDTLYWINN  244 (328)
T ss_dssp             EEEECTTSCEEEEESS
T ss_pred             eEEEecCCCEEEEEcc
Confidence            9999999999999874

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.57  E-value=2.9e-13  Score=113.09  Aligned_cols=139  Identities=14%  Similarity=0.229  Sum_probs=108.3

Q ss_pred             cCCcceEEEcCCCCEEEEe-CCCeEEEEecCCcEEEeee--ccCcCccCeEEcCCCCEEEEeCCC-CeEEEccCC-ceEE
Q 026389           76 LNGPEDVCVDRNGVLYTAT-RDGWIKRLHKNGTWENWKL--IGGDTLLGITTTQENEILVCDADK-GLLKVTEEG-VTVL  150 (239)
Q Consensus        76 ~~gPe~ia~d~~G~ly~~~-~~g~I~~~~~~G~~~~~~~--~~~~p~~Gl~~d~~G~L~v~d~~~-g~~~v~~~g-~~~l  150 (239)
                      ...|.+|++|++|++|+++ .+++|.+++++|+...+..  ....|. +++++++|++|+++... ++.+++.+| .+.+
T Consensus        19 ~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~g~l~v~~~~~~~v~~~d~~g~~~~~   97 (300)
T 2qc5_A           19 DSGPYGITSSEDGKVWFTQHKANKISSLDQSGRIKEFEVPTPDAKVM-CLIVSSLGDIWFTENGANKIGKLSKKGGFTEY   97 (300)
T ss_dssp             TCCEEEEEECTTSCEEEEETTTTEEEEECTTSCEEEEECSSTTCCEE-EEEECTTSCEEEEETTTTEEEEECTTSCEEEE
T ss_pred             CCCcceeeECCCCCEEEEcCCCCeEEEECCCCceEEEECCCCCCcce-eEEECCCCCEEEEecCCCeEEEECCCCCeEEe
Confidence            5799999999999999988 6799999998877655432  235788 99999999999999754 466777557 4433


Q ss_pred             ecccCCccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEe-c-CCCCCcceEEEcCC
Q 026389          151 ASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSIL-L-DSLFFANGVALSKD  228 (239)
Q Consensus       151 ~~~~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~-~-~~l~~pnGia~s~d  228 (239)
                      ....   ....|.+++++++|++|+++..                 .++|+++|++ ++.... . .....|++++++++
T Consensus        98 ~~~~---~~~~~~~i~~~~~g~l~v~~~~-----------------~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~  156 (300)
T 2qc5_A           98 PLPQ---PDSGPYGITEGLNGDIWFTQLN-----------------GDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSD  156 (300)
T ss_dssp             ECSS---TTCCEEEEEECSTTCEEEEETT-----------------TTEEEEECTT-SCEEEEECSSTTCCEEEEEECTT
T ss_pred             cCCC---CCCCCccceECCCCCEEEEccC-----------------CCeEEEECCC-CCEEEccCCCCCCCceeEEECCC
Confidence            2211   1256899999999999999864                 4789999998 665543 2 34678999999999


Q ss_pred             CCEEEEEeC
Q 026389          229 EDYLVVCET  237 (239)
Q Consensus       229 g~~lyvadt  237 (239)
                      |+ ||+++.
T Consensus       157 g~-l~v~~~  164 (300)
T 2qc5_A          157 NA-LWFTEN  164 (300)
T ss_dssp             SS-EEEEET
T ss_pred             CC-EEEEec
Confidence            98 888875

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=99.57  E-value=6.6e-14  Score=120.22  Aligned_cols=136  Identities=14%  Similarity=0.133  Sum_probs=102.2

Q ss_pred             CCcceEEEcC-CCCEEEEeCCCeEEEEecCC-cEEEeee-----ccCcCccCeEEcC-CCCEEEEeCC------------
Q 026389           77 NGPEDVCVDR-NGVLYTATRDGWIKRLHKNG-TWENWKL-----IGGDTLLGITTTQ-ENEILVCDAD------------  136 (239)
Q Consensus        77 ~gPe~ia~d~-~G~ly~~~~~g~I~~~~~~G-~~~~~~~-----~~~~p~~Gl~~d~-~G~L~v~d~~------------  136 (239)
                      ..|.+|++++ +|+||+++..+.|+++++++ +.+.+..     ....|+ ++++|+ +|+|||+|..            
T Consensus        80 ~~p~gi~~~~~~g~l~v~d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~-~i~~d~~~G~l~v~d~~~~~~~~~~~~~~  158 (322)
T 2fp8_A           80 GRTYDISYNLQNNQLYIVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLY-AVTVDQRTGIVYFTDVSTLYDDRGVQQIM  158 (322)
T ss_dssp             CCEEEEEEETTTTEEEEEETTTEEEEECTTCEECEEEESEETTEECSCEE-EEEECTTTCCEEEEESCSSCCTTCHHHHH
T ss_pred             CCCceEEEcCCCCcEEEEECCCCEEEEeCCCCEEEEecccCCCCcccccc-eEEEecCCCEEEEECCcccccccccceeh
Confidence            4699999997 89999998777899999864 4444432     224689 999999 9999999965            


Q ss_pred             ------CCeEEEcc-CC-ceEEecccCCccccccccEEEcCCCC-EEEEeCCCCcCcccccccceeecCCceEEEEeCCC
Q 026389          137 ------KGLLKVTE-EG-VTVLASHVNGSRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSL  207 (239)
Q Consensus       137 ------~g~~~v~~-~g-~~~l~~~~~g~~~~~pn~l~vd~dG~-iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~  207 (239)
                            .++++++. .+ .+.+..     .+..||++++++||+ +|++|..                 .++|++|+.++
T Consensus       159 ~~~~~~g~v~~~d~~~~~~~~~~~-----~~~~p~gia~~~dg~~lyv~d~~-----------------~~~I~~~~~~~  216 (322)
T 2fp8_A          159 DTSDKTGRLIKYDPSTKETTLLLK-----ELHVPGGAEVSADSSFVLVAEFL-----------------SHQIVKYWLEG  216 (322)
T ss_dssp             HHTCCCEEEEEEETTTTEEEEEEE-----EESCCCEEEECTTSSEEEEEEGG-----------------GTEEEEEESSS
T ss_pred             cccCCCceEEEEeCCCCEEEEecc-----CCccCcceEECCCCCEEEEEeCC-----------------CCeEEEEECCC
Confidence                  23666775 45 554432     356799999999995 9999975                 47999999875


Q ss_pred             ---CeEEEecCCCCCcceEEEcCCCCEEEEEeC
Q 026389          208 ---NETSILLDSLFFANGVALSKDEDYLVVCET  237 (239)
Q Consensus       208 ---~~~~~~~~~l~~pnGia~s~dg~~lyvadt  237 (239)
                         ++.+.+.. +..|+||+++++|+ |||++.
T Consensus       217 ~~~~~~~~~~~-~~gP~gi~~d~~G~-l~va~~  247 (322)
T 2fp8_A          217 PKKGTAEVLVK-IPNPGNIKRNADGH-FWVSSS  247 (322)
T ss_dssp             TTTTCEEEEEE-CSSEEEEEECTTSC-EEEEEE
T ss_pred             CcCCccceEEe-CCCCCCeEECCCCC-EEEEec
Confidence               34444433 22399999999997 899874

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.57  E-value=3e-13  Score=112.99  Aligned_cols=139  Identities=17%  Similarity=0.253  Sum_probs=107.8

Q ss_pred             cCCcceEEEcCCCCEEEEe-CCCeEEEEecCCcEEEeee--ccCcCccCeEEcCCCCEEEEeCCC-CeEEEccCC-ceEE
Q 026389           76 LNGPEDVCVDRNGVLYTAT-RDGWIKRLHKNGTWENWKL--IGGDTLLGITTTQENEILVCDADK-GLLKVTEEG-VTVL  150 (239)
Q Consensus        76 ~~gPe~ia~d~~G~ly~~~-~~g~I~~~~~~G~~~~~~~--~~~~p~~Gl~~d~~G~L~v~d~~~-g~~~v~~~g-~~~l  150 (239)
                      ...|.+++++++|++|+++ .++.|++++++|+...+..  ....|. +++++++|+||+++... ++.+++.+| ...+
T Consensus       103 ~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~-~i~~d~~g~l~v~~~~~~~i~~~~~~g~~~~~  181 (300)
T 2qc5_A          103 DSGPYGITEGLNGDIWFTQLNGDRIGKLTADGTIYEYDLPNKGSYPA-FITLGSDNALWFTENQNNSIGRITNTGKLEEY  181 (300)
T ss_dssp             TCCEEEEEECSTTCEEEEETTTTEEEEECTTSCEEEEECSSTTCCEE-EEEECTTSSEEEEETTTTEEEEECTTCCEEEE
T ss_pred             CCCCccceECCCCCEEEEccCCCeEEEECCCCCEEEccCCCCCCCce-eEEECCCCCEEEEecCCCeEEEECCCCcEEEe
Confidence            3679999999999999988 4789999998887765432  346789 99999999999999754 566677766 4433


Q ss_pred             ecccCCccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEe-c-CCCCCcceEEEcCC
Q 026389          151 ASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSIL-L-DSLFFANGVALSKD  228 (239)
Q Consensus       151 ~~~~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~-~-~~l~~pnGia~s~d  228 (239)
                      ..   ......|.+++++++|++|+++..                 .++|++||++ ++.... . .....|.+|+++++
T Consensus       182 ~~---~~~~~~~~~i~~d~~g~l~v~~~~-----------------~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~  240 (300)
T 2qc5_A          182 PL---PTNAAAPVGITSGNDGALWFVEIM-----------------GNKIGRITTT-GEISEYDIPTPNARPHAITAGKN  240 (300)
T ss_dssp             EC---SSTTCCEEEEEECTTSSEEEEETT-----------------TTEEEEECTT-CCEEEEECSSTTCCEEEEEECST
T ss_pred             eC---CCCCCCcceEEECCCCCEEEEccC-----------------CCEEEEEcCC-CcEEEEECCCCCCCceEEEECCC
Confidence            21   123467999999999999999865                 4789999995 555443 2 35678999999999


Q ss_pred             CCEEEEEeC
Q 026389          229 EDYLVVCET  237 (239)
Q Consensus       229 g~~lyvadt  237 (239)
                      |+ |||++.
T Consensus       241 g~-l~v~~~  248 (300)
T 2qc5_A          241 SE-IWFTEW  248 (300)
T ss_dssp             TC-EEEEET
T ss_pred             CC-EEEecc
Confidence            97 899874

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.56  E-value=2.4e-13  Score=121.38  Aligned_cols=143  Identities=6%  Similarity=0.040  Sum_probs=105.2

Q ss_pred             CcCCcceEEEcCCCCEEEEe-CCCeEEEEecC-CcEEEeeeccCcCccCeEEcCCCC-EEEEeCCC--CeEEEcc-CC-c
Q 026389           75 ILNGPEDVCVDRNGVLYTAT-RDGWIKRLHKN-GTWENWKLIGGDTLLGITTTQENE-ILVCDADK--GLLKVTE-EG-V  147 (239)
Q Consensus        75 ~~~gPe~ia~d~~G~ly~~~-~~g~I~~~~~~-G~~~~~~~~~~~p~~Gl~~d~~G~-L~v~d~~~--g~~~v~~-~g-~  147 (239)
                      ++..|.+|++|++|+||+++ .+++|++++.+ +++..+......|.  ++++++|+ ||+++...  .++.++. .+ .
T Consensus       129 ~~~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~~~--ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~  206 (409)
T 3hrp_A          129 KFKYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKGGK--PAVTKDKQRVYSIGWEGTHTVYVYMKASGWA  206 (409)
T ss_dssp             CCCCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCCBCB--CEECTTSSEEEEEBSSTTCEEEEEEGGGTTC
T ss_pred             ccCCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCCCCc--eeEecCCCcEEEEecCCCceEEEEEcCCCce
Confidence            47799999999999999888 66899999986 56666655544443  88999885 88998754  5667774 34 3


Q ss_pred             -eEEecccCCccccccccEEEcC-CCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEe----cCCC--CC
Q 026389          148 -TVLASHVNGSRINLADDLIAAT-DGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSIL----LDSL--FF  219 (239)
Q Consensus       148 -~~l~~~~~g~~~~~pn~l~vd~-dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~----~~~l--~~  219 (239)
                       ..+. .........|+++++++ +|+||+++.                  +++|++||++++....+    ..+.  ..
T Consensus       207 ~~~~g-~~~~~~~~~p~~iav~p~~g~lyv~d~------------------~~~I~~~d~~~~~~~~~~~~~~~g~~~~~  267 (409)
T 3hrp_A          207 PTRIG-QLGSTFSGKIGAVALDETEEWLYFVDS------------------NKNFGRFNVKTQEVTLIKQLELSGSLGTN  267 (409)
T ss_dssp             EEEEE-ECCTTSCSCCCBCEECTTSSEEEEECT------------------TCEEEEEETTTCCEEEEEECCCCSCCCCS
T ss_pred             eEEee-eccchhcCCcEEEEEeCCCCeEEEEEC------------------CCcEEEEECCCCCEEEEecccccCCCCCC
Confidence             2331 11111357799999999 789999874                  37999999988876665    3222  23


Q ss_pred             cc-eEEEcCCCCEEEEEeCC
Q 026389          220 AN-GVALSKDEDYLVVCETF  238 (239)
Q Consensus       220 pn-Gia~s~dg~~lyvadt~  238 (239)
                      |. +|+++|++..|||+|+.
T Consensus       268 P~~~ia~~p~~g~lyv~d~~  287 (409)
T 3hrp_A          268 PGPYLIYYFVDSNFYMSDQN  287 (409)
T ss_dssp             SCCEEEEETTTTEEEEEETT
T ss_pred             ccccEEEeCCCCEEEEEeCC
Confidence            44 99999987889999974

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.56  E-value=4.3e-13  Score=113.16  Aligned_cols=137  Identities=20%  Similarity=0.297  Sum_probs=104.7

Q ss_pred             cCCcceEEEcCCCCEEEEeC------------------CCeEEEEecCCcEEEeeeccCcCccCeEEcCCCCEEEEeCCC
Q 026389           76 LNGPEDVCVDRNGVLYTATR------------------DGWIKRLHKNGTWENWKLIGGDTLLGITTTQENEILVCDADK  137 (239)
Q Consensus        76 ~~gPe~ia~d~~G~ly~~~~------------------~g~I~~~~~~G~~~~~~~~~~~p~~Gl~~d~~G~L~v~d~~~  137 (239)
                      ...|.++++|++|++|+++.                  .+.|++++++|+...+......|+ |++++++|++++++...
T Consensus       114 ~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~-gi~~s~dg~~lv~~~~~  192 (296)
T 3e5z_A          114 LNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPDGTLSAPIRDRVKPN-GLAFLPSGNLLVSDTGD  192 (296)
T ss_dssp             CCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTTSCEEEEECCCSSEE-EEEECTTSCEEEEETTT
T ss_pred             CCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCCCCEEEeecCCCCCc-cEEECCCCCEEEEeCCC
Confidence            34688999999999998642                  469999998888777666677899 99999999877988876


Q ss_pred             CeE-EEc-c-CC-c---eEEecccCCccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeE
Q 026389          138 GLL-KVT-E-EG-V---TVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNET  210 (239)
Q Consensus       138 g~~-~v~-~-~g-~---~~l~~~~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~  210 (239)
                      +.+ .++ . +| .   ..+. .   .....|+++++|++|++|+++ .                  ++|++||++++.+
T Consensus       193 ~~i~~~~~~~~g~~~~~~~~~-~---~~~~~p~~i~~d~~G~l~v~~-~------------------~~v~~~~~~g~~~  249 (296)
T 3e5z_A          193 NATHRYCLNARGETEYQGVHF-T---VEPGKTDGLRVDAGGLIWASA-G------------------DGVHVLTPDGDEL  249 (296)
T ss_dssp             TEEEEEEECSSSCEEEEEEEE-C---CSSSCCCSEEEBTTSCEEEEE-T------------------TEEEEECTTSCEE
T ss_pred             CeEEEEEECCCCcCcCCCeEe-e---CCCCCCCeEEECCCCCEEEEc-C------------------CeEEEECCCCCEE
Confidence            544 445 2 55 4   1222 1   133578999999999999998 3                  6899999986555


Q ss_pred             EEecCCCCCcceEEE-cCCCCEEEEEeC
Q 026389          211 SILLDSLFFANGVAL-SKDEDYLVVCET  237 (239)
Q Consensus       211 ~~~~~~l~~pnGia~-s~dg~~lyvadt  237 (239)
                      ..+...-. |+.++| ++|+++||++..
T Consensus       250 ~~~~~~~~-~~~~~f~~~d~~~L~v~t~  276 (296)
T 3e5z_A          250 GRVLTPQT-TSNLCFGGPEGRTLYMTVS  276 (296)
T ss_dssp             EEEECSSC-CCEEEEESTTSCEEEEEET
T ss_pred             EEEECCCC-ceeEEEECCCCCEEEEEcC
Confidence            55544444 999999 589999999864

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.55  E-value=4.1e-13  Score=112.09  Aligned_cols=139  Identities=13%  Similarity=0.223  Sum_probs=108.0

Q ss_pred             cCCcceEEEcCCCCEEEEe-CCCeEEEEecCCcEEEeee--ccCcCccCeEEcCCCCEEEEeCCC-CeEEEccCC-ceEE
Q 026389           76 LNGPEDVCVDRNGVLYTAT-RDGWIKRLHKNGTWENWKL--IGGDTLLGITTTQENEILVCDADK-GLLKVTEEG-VTVL  150 (239)
Q Consensus        76 ~~gPe~ia~d~~G~ly~~~-~~g~I~~~~~~G~~~~~~~--~~~~p~~Gl~~d~~G~L~v~d~~~-g~~~v~~~g-~~~l  150 (239)
                      ...|.++++|++|++|++. .+++|++++++|+.+.+..  ....|. +++++++|+||+++... ++.+++.+| ...+
T Consensus        56 ~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~-~i~~~~~g~l~v~~~~~~~i~~~d~~g~~~~~  134 (299)
T 2z2n_A           56 DAKVMCLTISSDGEVWFTENAANKIGRITKKGIIKEYTLPNPDSAPY-GITEGPNGDIWFTEMNGNRIGRITDDGKIREY  134 (299)
T ss_dssp             TCCEEEEEECTTSCEEEEETTTTEEEEECTTSCEEEEECSSTTCCEE-EEEECTTSCEEEEETTTTEEEEECTTCCEEEE
T ss_pred             cCceeeEEECCCCCEEEeCCCCCeEEEECCCCcEEEEeCCCcCCCce-eeEECCCCCEEEEecCCceEEEECCCCCEEEe
Confidence            3679999999999999987 4789999998887765542  345788 99999999999998654 566677766 4433


Q ss_pred             ecccCCccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEe--cCCCCCcceEEEcCC
Q 026389          151 ASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSIL--LDSLFFANGVALSKD  228 (239)
Q Consensus       151 ~~~~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~--~~~l~~pnGia~s~d  228 (239)
                      ...   .....|++++++++|++|+++..                 .++|++||+ ++++..+  ......|++++++++
T Consensus       135 ~~~---~~~~~~~~i~~~~~g~l~v~~~~-----------------~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~  193 (299)
T 2z2n_A          135 ELP---NKGSYPSFITLGSDNALWFTENQ-----------------NNAIGRITE-SGDITEFKIPTPASGPVGITKGND  193 (299)
T ss_dssp             ECS---STTCCEEEEEECTTSCEEEEETT-----------------TTEEEEECT-TCCEEEEECSSTTCCEEEEEECTT
T ss_pred             cCC---CCCCCCceEEEcCCCCEEEEeCC-----------------CCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCC
Confidence            221   12357899999999999999864                 478999999 5766554  245678999999999


Q ss_pred             CCEEEEEeC
Q 026389          229 EDYLVVCET  237 (239)
Q Consensus       229 g~~lyvadt  237 (239)
                      |+ ||+++.
T Consensus       194 g~-l~v~~~  201 (299)
T 2z2n_A          194 DA-LWFVEI  201 (299)
T ss_dssp             SS-EEEEET
T ss_pred             CC-EEEEcc
Confidence            88 788874

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.55  E-value=7.1e-13  Score=110.62  Aligned_cols=139  Identities=13%  Similarity=0.247  Sum_probs=107.6

Q ss_pred             cCCcceEEEcCCCCEEEEeC-CCeEEEEecCCcEEEeee--ccCcCccCeEEcCCCCEEEEeCCC-CeEEEccCC-ceEE
Q 026389           76 LNGPEDVCVDRNGVLYTATR-DGWIKRLHKNGTWENWKL--IGGDTLLGITTTQENEILVCDADK-GLLKVTEEG-VTVL  150 (239)
Q Consensus        76 ~~gPe~ia~d~~G~ly~~~~-~g~I~~~~~~G~~~~~~~--~~~~p~~Gl~~d~~G~L~v~d~~~-g~~~v~~~g-~~~l  150 (239)
                      ...|.++++|++|++|+++. ++.|.+++++++...+..  ....|. +++++++|++|+++... ++++++.+| .+.+
T Consensus        14 ~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~-~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~   92 (299)
T 2z2n_A           14 DTGPYGITVSDKGKVWITQHKANMISCINLDGKITEYPLPTPDAKVM-CLTISSDGEVWFTENAANKIGRITKKGIIKEY   92 (299)
T ss_dssp             SCCEEEEEECTTSCEEEEETTTTEEEEECTTCCEEEEECSSTTCCEE-EEEECTTSCEEEEETTTTEEEEECTTSCEEEE
T ss_pred             CCCccceEECCCCCEEEEecCCCcEEEEcCCCCeEEecCCcccCcee-eEEECCCCCEEEeCCCCCeEEEECCCCcEEEE
Confidence            56899999999999999885 789999998877665542  346788 99999999999998754 466777666 5444


Q ss_pred             ecccCCccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEec--CCCCCcceEEEcCC
Q 026389          151 ASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILL--DSLFFANGVALSKD  228 (239)
Q Consensus       151 ~~~~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~--~~l~~pnGia~s~d  228 (239)
                      ...   .....|++++++++|++|+++..                 .++|+++|+ +++...+.  .....|++++++++
T Consensus        93 ~~~---~~~~~~~~i~~~~~g~l~v~~~~-----------------~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~  151 (299)
T 2z2n_A           93 TLP---NPDSAPYGITEGPNGDIWFTEMN-----------------GNRIGRITD-DGKIREYELPNKGSYPSFITLGSD  151 (299)
T ss_dssp             ECS---STTCCEEEEEECTTSCEEEEETT-----------------TTEEEEECT-TCCEEEEECSSTTCCEEEEEECTT
T ss_pred             eCC---CcCCCceeeEECCCCCEEEEecC-----------------CceEEEECC-CCCEEEecCCCCCCCCceEEEcCC
Confidence            321   12357899999999999999865                 478999999 46555443  34678999999999


Q ss_pred             CCEEEEEeC
Q 026389          229 EDYLVVCET  237 (239)
Q Consensus       229 g~~lyvadt  237 (239)
                      |+ +|++++
T Consensus       152 g~-l~v~~~  159 (299)
T 2z2n_A          152 NA-LWFTEN  159 (299)
T ss_dssp             SC-EEEEET
T ss_pred             CC-EEEEeC
Confidence            96 788764

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=99.55  E-value=7.3e-15  Score=139.74  Aligned_cols=142  Identities=13%  Similarity=0.129  Sum_probs=106.4

Q ss_pred             cCCcceEEEcC-CCCEEEEe-CCCeEEEEecCC----c-EEEee-eccCcCccCeEEc-CCCCEEEEeCCCCeEE-EccC
Q 026389           76 LNGPEDVCVDR-NGVLYTAT-RDGWIKRLHKNG----T-WENWK-LIGGDTLLGITTT-QENEILVCDADKGLLK-VTEE  145 (239)
Q Consensus        76 ~~gPe~ia~d~-~G~ly~~~-~~g~I~~~~~~G----~-~~~~~-~~~~~p~~Gl~~d-~~G~L~v~d~~~g~~~-v~~~  145 (239)
                      +..|.+|+|++ ++.||+++ ..++|++++.+|    . .+.+. .....|. ||++| ..|+|||+|...+.+. ++.+
T Consensus       405 ~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~-glavD~~~g~LY~tD~~~~~I~v~d~d  483 (699)
T 1n7d_A          405 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD-GLAVDWIHSNIYWTDSVLGTVSVADTK  483 (699)
T ss_dssp             CTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CC-CEECCCSSSBCEECCTTTSCEEEEBSS
T ss_pred             CcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcc-eEEEEeeCCcEEEEeccCCeEEEEecC
Confidence            56899999997 67899887 678999999876    2 22222 2345799 99999 5679999998765554 4566


Q ss_pred             C--ceEEecccCCccccccccEEEcCC-CCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEec-CCCCCcc
Q 026389          146 G--VTVLASHVNGSRINLADDLIAATD-GSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILL-DSLFFAN  221 (239)
Q Consensus       146 g--~~~l~~~~~g~~~~~pn~l~vd~d-G~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~-~~l~~pn  221 (239)
                      |  .+++..    ..+..|++|++|++ |+|||||...                .++|+++++++...++++ ..+..||
T Consensus       484 g~~~~~l~~----~~~~~P~giavDp~~g~ly~td~~~----------------~~~I~~~~~dG~~~~~l~~~~l~~Pn  543 (699)
T 1n7d_A          484 GVKRKTLFR----EQGSKPRAIVVDPVHGFMYWTDWGT----------------PAKIKKGGLNGVDIYSLVTENIQWPN  543 (699)
T ss_dssp             SCCEEEECC----CSSCCCCCEECCSSSSCCEECCCSS----------------SCCEEBCCSSSCCCCEESCSSCSSCC
T ss_pred             CCceEEEEe----CCCCCcceEEEccCCCcEEEcccCC----------------CCeEEEEeCCCCCeeEEEeCCCCCcc
Confidence            6  444432    23567999999985 7999999641                378999998865555554 5689999


Q ss_pred             eEEEcCCCCEEEEEeCC
Q 026389          222 GVALSKDEDYLVVCETF  238 (239)
Q Consensus       222 Gia~s~dg~~lyvadt~  238 (239)
                      ||++++++++|||+|+.
T Consensus       544 Glavd~~~~~LY~aD~~  560 (699)
T 1n7d_A          544 GITLDLLSGRLYWVDSK  560 (699)
T ss_dssp             CEEECTTTCCEEEEETT
T ss_pred             EEEEeccCCEEEEEecC
Confidence            99999999999999975

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.54  E-value=2.7e-13  Score=114.53  Aligned_cols=144  Identities=14%  Similarity=0.165  Sum_probs=106.9

Q ss_pred             CCcceEEEcCCCCEEEEeC-C---------------CeEEEEecCCcEEEeeeccCcCccCeEEc----CCC-CEEEEeC
Q 026389           77 NGPEDVCVDRNGVLYTATR-D---------------GWIKRLHKNGTWENWKLIGGDTLLGITTT----QEN-EILVCDA  135 (239)
Q Consensus        77 ~gPe~ia~d~~G~ly~~~~-~---------------g~I~~~~~~G~~~~~~~~~~~p~~Gl~~d----~~G-~L~v~d~  135 (239)
                      ..|.++++|++|++|+++. +               +.|++++++|+.+.+......|. +++++    ++| .||+++.
T Consensus       117 ~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~-~i~~~~~~d~dg~~l~v~~~  195 (314)
T 1pjx_A          117 QGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDGQMIQVDTAFQFPN-GIAVRHMNDGRPYQLIVAET  195 (314)
T ss_dssp             BCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTSCEEEEEEEESSEE-EEEEEECTTSCEEEEEEEET
T ss_pred             cCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCCCCEEEeccCCCCcc-eEEEecccCCCCCEEEEEEC
Confidence            4689999999999998873 3               68999998887766555567789 99999    999 6999987


Q ss_pred             CC-CeEEEc-c-CC-ceE--EecccCCccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCe
Q 026389          136 DK-GLLKVT-E-EG-VTV--LASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNE  209 (239)
Q Consensus       136 ~~-g~~~v~-~-~g-~~~--l~~~~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~  209 (239)
                      .. ++..++ . +| ...  ......+..+..|+++++|++|++|+++..                 .++|++||+++++
T Consensus       196 ~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~-----------------~~~i~~~d~~~g~  258 (314)
T 1pjx_A          196 PTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWG-----------------SSHIEVFGPDGGQ  258 (314)
T ss_dssp             TTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEET-----------------TTEEEEECTTCBS
T ss_pred             CCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcC-----------------CCEEEEEcCCCCc
Confidence            64 455555 2 45 221  112222222256899999999999999854                 4789999998554


Q ss_pred             E-EEecCCCCCcceEEEcCCCCEEEEEeCC
Q 026389          210 T-SILLDSLFFANGVALSKDEDYLVVCETF  238 (239)
Q Consensus       210 ~-~~~~~~l~~pnGia~s~dg~~lyvadt~  238 (239)
                      . ..+......|.++++++||++||+++..
T Consensus       259 ~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~  288 (314)
T 1pjx_A          259 PKMRIRCPFEKPSNLHFKPQTKTIFVTEHE  288 (314)
T ss_dssp             CSEEEECSSSCEEEEEECTTSSEEEEEETT
T ss_pred             EeEEEeCCCCCceeEEECCCCCEEEEEeCC
Confidence            3 4443444789999999999999998754

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.52  E-value=4.3e-13  Score=114.26  Aligned_cols=136  Identities=15%  Similarity=0.215  Sum_probs=101.9

Q ss_pred             cCCcceEEEcCCCCEEEEeC------------------CCeEEEEec-CCcEEEeeeccCcCccCeEEcCCCC-EEEEeC
Q 026389           76 LNGPEDVCVDRNGVLYTATR------------------DGWIKRLHK-NGTWENWKLIGGDTLLGITTTQENE-ILVCDA  135 (239)
Q Consensus        76 ~~gPe~ia~d~~G~ly~~~~------------------~g~I~~~~~-~G~~~~~~~~~~~p~~Gl~~d~~G~-L~v~d~  135 (239)
                      ...|.+++++++|++|+++.                  .+.|+++++ +|+++.+. ....|+ |++++++|+ ||+++.
T Consensus       130 ~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~-~~~~p~-gl~~spdg~~lyv~~~  207 (305)
T 3dr2_A          130 LNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA-DLDHPN-GLAFSPDEQTLYVSQT  207 (305)
T ss_dssp             CSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE-EESSEE-EEEECTTSSEEEEEEC
T ss_pred             cCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe-cCCCCc-ceEEcCCCCEEEEEec
Confidence            45688999999999999641                  368999998 57766655 667899 999999996 999998


Q ss_pred             C------CCeEEEc-cCC----ceEEecccCCccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEe
Q 026389          136 D------KGLLKVT-EEG----VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYD  204 (239)
Q Consensus       136 ~------~g~~~v~-~~g----~~~l~~~~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d  204 (239)
                      .      ..+..++ ..+    .+.+...    ....|+++++|++|+||++..                   +.|++|+
T Consensus       208 ~~~~~~~~~i~~~~~~~~~l~~~~~~~~~----~~~~pdgi~~d~~G~lwv~~~-------------------~gv~~~~  264 (305)
T 3dr2_A          208 PEQGHGSVEITAFAWRDGALHDRRHFASV----PDGLPDGFCVDRGGWLWSSSG-------------------TGVCVFD  264 (305)
T ss_dssp             CC---CCCEEEEEEEETTEEEEEEEEECC----SSSCCCSEEECTTSCEEECCS-------------------SEEEEEC
T ss_pred             CCcCCCCCEEEEEEecCCCccCCeEEEEC----CCCCCCeEEECCCCCEEEecC-------------------CcEEEEC
Confidence            6      3455555 222    1222221    234689999999999999872                   3599999


Q ss_pred             CCCCeEEEecCCCCCcceEEEcCCCCEEEEEeC
Q 026389          205 PSLNETSILLDSLFFANGVALSKDEDYLVVCET  237 (239)
Q Consensus       205 ~~~~~~~~~~~~l~~pnGia~s~dg~~lyvadt  237 (239)
                      ++++.+..+... ..+..++|++|++.||++..
T Consensus       265 ~~g~~~~~~~~~-~~~~~~~f~~d~~~L~it~~  296 (305)
T 3dr2_A          265 SDGQLLGHIPTP-GTASNCTFDQAQQRLFITGG  296 (305)
T ss_dssp             TTSCEEEEEECS-SCCCEEEECTTSCEEEEEET
T ss_pred             CCCCEEEEEECC-CceeEEEEeCCCCEEEEEcC
Confidence            986655555433 26899999999999999865

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=99.52  E-value=2.8e-13  Score=123.62  Aligned_cols=144  Identities=13%  Similarity=0.095  Sum_probs=107.1

Q ss_pred             cCCcceEEEcC-CCCEEEEe-CCCeEEEEecC--------CcE------------EEeee--ccCcCccCeEEcCCCC-E
Q 026389           76 LNGPEDVCVDR-NGVLYTAT-RDGWIKRLHKN--------GTW------------ENWKL--IGGDTLLGITTTQENE-I  130 (239)
Q Consensus        76 ~~gPe~ia~d~-~G~ly~~~-~~g~I~~~~~~--------G~~------------~~~~~--~~~~p~~Gl~~d~~G~-L  130 (239)
                      +..|.++++++ +|.||+++ .+++|++++.+        ++.            +.+..  ....|. +|+++++|+ |
T Consensus       246 ~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~-~ia~~p~G~~l  324 (496)
T 3kya_A          246 YKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEF-QIFIHPTGKYA  324 (496)
T ss_dssp             ESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCE-EEEECTTSSEE
T ss_pred             CCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccccccceeEecCCCCCce-EEEEcCCCCEE
Confidence            56899999999 78999888 78899999975        432            12222  235789 999999998 8


Q ss_pred             EEEeCCCCeEE-EccCC-c------eEEecc--c----CC----ccccccc-cEEEc-------CCCCEEEEeCCCCcCc
Q 026389          131 LVCDADKGLLK-VTEEG-V------TVLASH--V----NG----SRINLAD-DLIAA-------TDGSIYFSVASTKFGL  184 (239)
Q Consensus       131 ~v~d~~~g~~~-v~~~g-~------~~l~~~--~----~g----~~~~~pn-~l~vd-------~dG~iy~td~~~~~~~  184 (239)
                      ||+|...+.++ ++.++ .      .+++..  .    +|    ..|+.|. +++++       ++|+|||+|..     
T Consensus       325 YvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~-----  399 (496)
T 3kya_A          325 YFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRL-----  399 (496)
T ss_dssp             EEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEEEEECTTCCSSCCEEEEEEEGG-----
T ss_pred             EEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCeEEEEEccccccccCCCeEEEEECC-----
Confidence            99998876655 44444 2      334332  1    22    3678999 88887       78999999976     


Q ss_pred             ccccccceeecCCceEEEEeCCCCeEEEecC-----------------C-------CCCcceEEEcCCCCEEEEEeCC
Q 026389          185 HNWGLDLLEAKPHGKLLKYDPSLNETSILLD-----------------S-------LFFANGVALSKDEDYLVVCETF  238 (239)
Q Consensus       185 ~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~-----------------~-------l~~pnGia~s~dg~~lyvadt~  238 (239)
                                  +.||.+++++ |.++.++.                 +       |..|.|||+++++..|||+|+.
T Consensus       400 ------------N~rIr~i~~~-G~v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~g~lyVaD~~  464 (496)
T 3kya_A          400 ------------NFCVRKVTPE-GIVSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDVKEMFYVHDQV  464 (496)
T ss_dssp             ------------GTEEEEECTT-CBEEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETTTTEEEEEETT
T ss_pred             ------------CCEEEEEeCC-CCEEEEecccccccccCccccccCCCCchhhhhcCCCcEEEEECCCCEEEEEeCC
Confidence                        5799999986 67776642                 1       5679999999985569999985

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=99.50  E-value=1.7e-13  Score=130.42  Aligned_cols=139  Identities=14%  Similarity=0.189  Sum_probs=104.8

Q ss_pred             cCCcceEEEcC-CCCEEEEe-CCCeEEEEecCCcE-EEeee-ccCcCccCeEEcC-CCCEEEEeCCC-C-eEEEccCC--
Q 026389           76 LNGPEDVCVDR-NGVLYTAT-RDGWIKRLHKNGTW-ENWKL-IGGDTLLGITTTQ-ENEILVCDADK-G-LLKVTEEG--  146 (239)
Q Consensus        76 ~~gPe~ia~d~-~G~ly~~~-~~g~I~~~~~~G~~-~~~~~-~~~~p~~Gl~~d~-~G~L~v~d~~~-g-~~~v~~~g--  146 (239)
                      +..|++|++|. +|+||+++ ..++|.+++.+|+. +++.. ....|. ||++|+ .|+||++|... + +.+++.+|  
T Consensus       452 ~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~-giavDp~~g~ly~td~~~~~~I~~~~~dG~~  530 (699)
T 1n7d_A          452 IQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPR-AIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD  530 (699)
T ss_dssp             C--CCCEECCCSSSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCC-CEECCSSSSCCEECCCSSSCCEEBCCSSSCC
T ss_pred             CCCcceEEEEeeCCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcc-eEEEccCCCcEEEcccCCCCeEEEEeCCCCC
Confidence            56799999995 78999887 67899999998864 33333 357899 999997 46899999764 4 44455666  


Q ss_pred             ceEEecccCCccccccccEEEcCC-CCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecC---CCCCcce
Q 026389          147 VTVLASHVNGSRINLADDLIAATD-GSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLD---SLFFANG  222 (239)
Q Consensus       147 ~~~l~~~~~g~~~~~pn~l~vd~d-G~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~---~l~~pnG  222 (239)
                      .+++..    ..+..||+|++|++ |+|||+|..                 .++|+++|.++...++++.   .+.+|.|
T Consensus       531 ~~~l~~----~~l~~PnGlavd~~~~~LY~aD~~-----------------~~~I~~~d~dG~~~~~~~~~~~~~~~P~g  589 (699)
T 1n7d_A          531 IYSLVT----ENIQWPNGITLDLLSGRLYWVDSK-----------------LHSISSIDVNGGNRKTILEDEKRLAHPFS  589 (699)
T ss_dssp             CCEESC----SSCSSCCCEEECTTTCCEEEEETT-----------------TTEEEEECSSSSCCEEECCCSSSCSSCCC
T ss_pred             eeEEEe----CCCCCccEEEEeccCCEEEEEecC-----------------CCeEEEEccCCCceEEEEecCCcCCCceE
Confidence            444432    24678999999986 699999976                 5799999998766666653   4688999


Q ss_pred             EEEcCCCCEEEEEeCC
Q 026389          223 VALSKDEDYLVVCETF  238 (239)
Q Consensus       223 ia~s~dg~~lyvadt~  238 (239)
                      |+++.  +.|||+++.
T Consensus       590 lavd~--~~lywtd~~  603 (699)
T 1n7d_A          590 LAVFE--DKVFWTDII  603 (699)
T ss_dssp             CEEET--TEEEEECST
T ss_pred             eEEEC--CEEEEEeCC
Confidence            99964  589999864

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=99.46  E-value=1.1e-12  Score=119.78  Aligned_cols=142  Identities=13%  Similarity=0.177  Sum_probs=105.7

Q ss_pred             cCCcCCcceEEEcC--CCCEEEEe-CCCeEEEEecCC-cEEEeeecc----CcCccCeEE-------cCCCC-EEEEeCC
Q 026389           73 EGILNGPEDVCVDR--NGVLYTAT-RDGWIKRLHKNG-TWENWKLIG----GDTLLGITT-------TQENE-ILVCDAD  136 (239)
Q Consensus        73 ~g~~~gPe~ia~d~--~G~ly~~~-~~g~I~~~~~~G-~~~~~~~~~----~~p~~Gl~~-------d~~G~-L~v~d~~  136 (239)
                      .+.+..|.+|++||  +++||++. ..++|.++|.++ .+..+....    .+|. +|++       +++|+ |||+|..
T Consensus       135 ~~~~~~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~-~ia~~~~~~~~d~~G~~lyvad~~  213 (496)
T 3kya_A          135 CCGFSDNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIR-SIAFNKKIEGYADEAEYMIVAIDY  213 (496)
T ss_dssp             CBCCCSEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEE-EEEECCCBTTTBCTTCEEEEEECC
T ss_pred             ccccCCCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCc-EEEEeecccccCCCCCEEEEEeCC
Confidence            33467899999997  48999887 457899999754 566654432    3699 9999       99997 9999986


Q ss_pred             CC-------eEEEc--cCC-ce------EEecccCCccccccccEEEcC-CCCEEEEeCCCCcCcccccccceeecCCce
Q 026389          137 KG-------LLKVT--EEG-VT------VLASHVNGSRINLADDLIAAT-DGSIYFSVASTKFGLHNWGLDLLEAKPHGK  199 (239)
Q Consensus       137 ~g-------~~~v~--~~g-~~------~l~~~~~g~~~~~pn~l~vd~-dG~iy~td~~~~~~~~~~~~~~~e~~~~g~  199 (239)
                      .+       ++.++  .+| ..      .+.      .+.+|+++++++ +|.||+++..                 +++
T Consensus       214 ~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~------~~~~p~giavdp~~g~LYvtd~~-----------------~g~  270 (496)
T 3kya_A          214 DGKGDESPSVYIIKRNADGTFDDRSDIQLIA------AYKQCNGATIHPINGELYFNSYE-----------------KGQ  270 (496)
T ss_dssp             CTTGGGEEEEEEEECCTTSCCSTTSCEEEEE------EESCCCCEEECTTTCCEEEEETT-----------------TTE
T ss_pred             CCCcccCceEEEEecCCCCceeecccceeec------cCCCceEEEEcCCCCeEEEEECC-----------------CCE
Confidence            52       44554  345 31      222      346799999999 5799999976                 689


Q ss_pred             EEEEeCC-------CCeE------------EEe--cCCCCCcceEEEcCCCCEEEEEeCC
Q 026389          200 LLKYDPS-------LNET------------SIL--LDSLFFANGVALSKDEDYLVVCETF  238 (239)
Q Consensus       200 v~~~d~~-------~~~~------------~~~--~~~l~~pnGia~s~dg~~lyvadt~  238 (239)
                      |++||++       ++++            +.+  ......|.+||++|+|++|||+|+.
T Consensus       271 V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~  330 (496)
T 3kya_A          271 VFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVIN  330 (496)
T ss_dssp             EEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETT
T ss_pred             EEEEecccccccccCceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCC
Confidence            9999997       5554            122  2334578999999999999999985

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.45  E-value=3.3e-12  Score=109.10  Aligned_cols=141  Identities=14%  Similarity=0.190  Sum_probs=103.2

Q ss_pred             CCcceEEEcCCCCEEEEeC-------CCeEEEEecCC-cEEEeeeccCcCccCeEEcCCCC-EEEEeCCC-CeEEEcc--
Q 026389           77 NGPEDVCVDRNGVLYTATR-------DGWIKRLHKNG-TWENWKLIGGDTLLGITTTQENE-ILVCDADK-GLLKVTE--  144 (239)
Q Consensus        77 ~gPe~ia~d~~G~ly~~~~-------~g~I~~~~~~G-~~~~~~~~~~~p~~Gl~~d~~G~-L~v~d~~~-g~~~v~~--  144 (239)
                      ..|.++++|++|++|+++.       .+.|+++++++ +.+.+......|. +++++++|+ ||+++... ++..++.  
T Consensus       135 ~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~i~~~~dg~~l~v~~~~~~~i~~~d~~~  213 (333)
T 2dg1_A          135 YCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVAN-GIALSTDEKVLWVTETTANRLHRIALED  213 (333)
T ss_dssp             CCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEE-EEEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred             CcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEeecCCCccc-ceEECCCCCEEEEEeCCCCeEEEEEecC
Confidence            4688999999999998874       47899999865 5655545556789 999999996 99998654 4555553  


Q ss_pred             CC--ceEEe----cccCCccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecCCCC
Q 026389          145 EG--VTVLA----SHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLF  218 (239)
Q Consensus       145 ~g--~~~l~----~~~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~~l~  218 (239)
                      +|  .+.+.    ....+  ...|+++++|++|++|+++..                 .++|++||++++.+..+.....
T Consensus       214 ~g~~~~~~~~~~~~~~~~--~~~~~~i~~d~~G~l~v~~~~-----------------~~~v~~~d~~g~~~~~~~~~~~  274 (333)
T 2dg1_A          214 DGVTIQPFGATIPYYFTG--HEGPDSCCIDSDDNLYVAMYG-----------------QGRVLVFNKRGYPIGQILIPGR  274 (333)
T ss_dssp             TSSSEEEEEEEEEEECCS--SSEEEEEEEBTTCCEEEEEET-----------------TTEEEEECTTSCEEEEEECTTG
T ss_pred             CCcCcccccceEEEecCC--CCCCCceEECCCCCEEEEEcC-----------------CCEEEEECCCCCEEEEEEcCCC
Confidence            44  22221    11111  246899999999999999854                 4789999997655555543322


Q ss_pred             ------CcceEEEcCCCCEEEEEeC
Q 026389          219 ------FANGVALSKDEDYLVVCET  237 (239)
Q Consensus       219 ------~pnGia~s~dg~~lyvadt  237 (239)
                            .|.++++++||+.||++..
T Consensus       275 ~~g~~~~~~~~~~~~dg~~L~v~~~  299 (333)
T 2dg1_A          275 DEGHMLRSTHPQFIPGTNQLIICSN  299 (333)
T ss_dssp             GGTCSCBCCEEEECTTSCEEEEEEE
T ss_pred             ccccccCcceEEECCCCCEEEEEeC
Confidence                  6899999999999998764

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=99.43  E-value=1.1e-11  Score=103.96  Aligned_cols=139  Identities=19%  Similarity=0.214  Sum_probs=102.1

Q ss_pred             CCcceEEEcCCCCEEEEe-CCCeEEEEec-CCcEEEeeeccCcCccCeEEcCCCCEEEEeCCCCeEEEcc-CC--ceEEe
Q 026389           77 NGPEDVCVDRNGVLYTAT-RDGWIKRLHK-NGTWENWKLIGGDTLLGITTTQENEILVCDADKGLLKVTE-EG--VTVLA  151 (239)
Q Consensus        77 ~gPe~ia~d~~G~ly~~~-~~g~I~~~~~-~G~~~~~~~~~~~p~~Gl~~d~~G~L~v~d~~~g~~~v~~-~g--~~~l~  151 (239)
                      ...||++++ +++||+.. .+++++.+|. +.+...-....+.+. |++.| .++||++|....+..+|+ +.  ...+.
T Consensus        87 ~FgeGit~~-g~~ly~ltw~~~~v~v~D~~t~~~~~ti~~~~eG~-glt~d-g~~L~~SdGs~~i~~iDp~T~~v~~~I~  163 (262)
T 3nol_A           87 YFGEGISDW-KDKIVGLTWKNGLGFVWNIRNLRQVRSFNYDGEGW-GLTHN-DQYLIMSDGTPVLRFLDPESLTPVRTIT  163 (262)
T ss_dssp             CCEEEEEEE-TTEEEEEESSSSEEEEEETTTCCEEEEEECSSCCC-CEEEC-SSCEEECCSSSEEEEECTTTCSEEEEEE
T ss_pred             cceeEEEEe-CCEEEEEEeeCCEEEEEECccCcEEEEEECCCCce-EEecC-CCEEEEECCCCeEEEEcCCCCeEEEEEE
Confidence            345888887 46999887 7899999997 455433334455677 88875 358999997555666775 33  33333


Q ss_pred             cccCCccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecC--CC-----------C
Q 026389          152 SHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLD--SL-----------F  218 (239)
Q Consensus       152 ~~~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~--~l-----------~  218 (239)
                      -...|.++.++|.+... +|+||+....                 ...|+++|++++++...++  ++           .
T Consensus       164 V~~~g~~~~~lNELe~~-~G~lyan~w~-----------------~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~  225 (262)
T 3nol_A          164 VTAHGEELPELNELEWV-DGEIFANVWQ-----------------TNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPID  225 (262)
T ss_dssp             CEETTEECCCEEEEEEE-TTEEEEEETT-----------------SSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCC
T ss_pred             eccCCccccccceeEEE-CCEEEEEEcc-----------------CCeEEEEECCCCcEEEEEECCcCccccccccCcCC
Confidence            23457788889999987 8999998854                 4689999999999866543  22           3


Q ss_pred             CcceEEEcCCCCEEEEEe
Q 026389          219 FANGVALSKDEDYLVVCE  236 (239)
Q Consensus       219 ~pnGia~s~dg~~lyvad  236 (239)
                      .|||||++|+++.|||+-
T Consensus       226 vlNGIA~dp~~~~lfVTG  243 (262)
T 3nol_A          226 VLNGIAWDKEHHRLFVTG  243 (262)
T ss_dssp             CEEEEEEETTTTEEEEEE
T ss_pred             ceEEEEEcCCCCEEEEEC
Confidence            679999999999999974

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.42  E-value=6.8e-12  Score=108.78  Aligned_cols=161  Identities=13%  Similarity=0.185  Sum_probs=105.8

Q ss_pred             CcCCcceEEEcCCCCEEEEeC------CCeEEEEec-CCcE-EEeee------ccCcCccCeEEcC-CCCEEEEeC---C
Q 026389           75 ILNGPEDVCVDRNGVLYTATR------DGWIKRLHK-NGTW-ENWKL------IGGDTLLGITTTQ-ENEILVCDA---D  136 (239)
Q Consensus        75 ~~~gPe~ia~d~~G~ly~~~~------~g~I~~~~~-~G~~-~~~~~------~~~~p~~Gl~~d~-~G~L~v~d~---~  136 (239)
                      .+..|.+|++|++|+||+.+.      .++|++||. +|+. ..+..      ....++ ++++|+ +|.+||+|.   .
T Consensus        65 ~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~-~v~vd~~~g~~yvtd~~~~~  143 (343)
T 2qe8_A           65 TFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVN-DLAVDLIHNFVYISDPAPDD  143 (343)
T ss_dssp             CCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCC-EEEEETTTTEEEEEECCSGG
T ss_pred             ceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccc-eEEEecCCCEEEEEcCccCC
Confidence            467899999999999998873      589999997 4763 33321      124578 999996 468999997   4


Q ss_pred             -CCeEEEc-cCC-c-eEEec--c---------cCCccc-------------cccccEEEcCCC-CEEEEeCCCC--cCcc
Q 026389          137 -KGLLKVT-EEG-V-TVLAS--H---------VNGSRI-------------NLADDLIAATDG-SIYFSVASTK--FGLH  185 (239)
Q Consensus       137 -~g~~~v~-~~g-~-~~l~~--~---------~~g~~~-------------~~pn~l~vd~dG-~iy~td~~~~--~~~~  185 (239)
                       .+++.++ .+| . +++..  .         .+|..+             ..+|+|++++|| .+|+++...+  |.+.
T Consensus       144 ~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~  223 (343)
T 2qe8_A          144 KAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIK  223 (343)
T ss_dssp             GCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEE
T ss_pred             CCeEEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEE
Confidence             4555666 445 3 32211  0         112211             347999999999 6999986542  1000


Q ss_pred             -------------------c-----cc---------ccceeecCCceEEEEeCCCCeEEEecCC--CCCcceEEEcCCCC
Q 026389          186 -------------------N-----WG---------LDLLEAKPHGKLLKYDPSLNETSILLDS--LFFANGVALSKDED  230 (239)
Q Consensus       186 -------------------~-----~~---------~~~~e~~~~g~v~~~d~~~~~~~~~~~~--l~~pnGia~s~dg~  230 (239)
                                         .     ..         ..++.....++|.+||+.++++..+...  +.+|.+|++++||+
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~g~  303 (343)
T 2qe8_A          224 SADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSDGY  303 (343)
T ss_dssp             HHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEECTTSC
T ss_pred             HHHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECCceecCCeeEECCCCc
Confidence                               0     00         0111223456899999944777666533  78899999999976


Q ss_pred             EEEEEeC
Q 026389          231 YLVVCET  237 (239)
Q Consensus       231 ~lyvadt  237 (239)
                       |||+++
T Consensus       304 -l~v~~~  309 (343)
T 2qe8_A          304 -LYFDCN  309 (343)
T ss_dssp             -EEEEEC
T ss_pred             -EEEEeC
Confidence             788765

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=99.42  E-value=1.1e-11  Score=104.70  Aligned_cols=145  Identities=12%  Similarity=0.016  Sum_probs=101.5

Q ss_pred             eccCCcCCcceEEEcCCCCEEEEe-CCCeEEEEecC-CcEEEeeeccCcCccCeEEcCCC-CEEEEeCCCCeEEEcc-CC
Q 026389           71 LGEGILNGPEDVCVDRNGVLYTAT-RDGWIKRLHKN-GTWENWKLIGGDTLLGITTTQEN-EILVCDADKGLLKVTE-EG  146 (239)
Q Consensus        71 l~~g~~~gPe~ia~d~~G~ly~~~-~~g~I~~~~~~-G~~~~~~~~~~~p~~Gl~~d~~G-~L~v~d~~~g~~~v~~-~g  146 (239)
                      +..+.-..+|+++++ +++||+.. .+++|+.+|.+ ++.......+ .|. |+.+.+|| +||+++....+..+|+ +.
T Consensus        60 i~l~~~~fgeGi~~~-g~~lyv~t~~~~~v~viD~~t~~v~~~i~~g-~~~-g~glt~Dg~~l~vs~gs~~l~viD~~t~  136 (266)
T 2iwa_A           60 HKMDDSYFGEGLTLL-NEKLYQVVWLKNIGFIYDRRTLSNIKNFTHQ-MKD-GWGLATDGKILYGSDGTSILYEIDPHTF  136 (266)
T ss_dssp             EECCTTCCEEEEEEE-TTEEEEEETTCSEEEEEETTTTEEEEEEECC-SSS-CCEEEECSSSEEEECSSSEEEEECTTTC
T ss_pred             EecCCCcceEEEEEe-CCEEEEEEecCCEEEEEECCCCcEEEEEECC-CCC-eEEEEECCCEEEEECCCCeEEEEECCCC
Confidence            333444678899988 46999888 78999999964 4443223333 344 55455455 7999995444555674 33


Q ss_pred             --ceEEecccCCccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecC--CC-----
Q 026389          147 --VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLD--SL-----  217 (239)
Q Consensus       147 --~~~l~~~~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~--~l-----  217 (239)
                        ...+.-...+.++.++|++.+. +|.+|++...                 .+.|.++|++++++...++  ++     
T Consensus       137 ~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~-----------------~~~V~vID~~tg~V~~~I~~~g~~~~~~  198 (266)
T 2iwa_A          137 KLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQ-----------------TDCIARISAKDGTLLGWILLPNLRKKLI  198 (266)
T ss_dssp             CEEEEEECEETTEECCCEEEEEEE-TTEEEEEETT-----------------SSEEEEEETTTCCEEEEEECHHHHHHHH
T ss_pred             cEEEEEEECCCCcccccceeEEEE-CCEEEEecCC-----------------CCeEEEEECCCCcEEEEEECCCcccccc
Confidence              3333222345677789999998 8999999854                 4789999999998765543  22     


Q ss_pred             -------CCcceEEEcCCCCEEEEEe
Q 026389          218 -------FFANGVALSKDEDYLVVCE  236 (239)
Q Consensus       218 -------~~pnGia~s~dg~~lyvad  236 (239)
                             ..|||||+++|++++||+.
T Consensus       199 ~~~~~~~~v~nGIa~~~~~~~lfVTg  224 (266)
T 2iwa_A          199 DEGFRDIDVLNGIAWDQENKRIFVTG  224 (266)
T ss_dssp             HTTCTTCCCEEEEEEETTTTEEEEEE
T ss_pred             cccccccCceEEEEEcCCCCEEEEEC
Confidence                   3679999999999999986

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.41  E-value=1.1e-11  Score=106.73  Aligned_cols=139  Identities=18%  Similarity=0.154  Sum_probs=103.1

Q ss_pred             CcceEEEcCCCCEEEEeC-------CCeEEEEecCCcEEEeeeccCcCccCeEEcCCCC-EEEEeCCCC-eEEEcc---C
Q 026389           78 GPEDVCVDRNGVLYTATR-------DGWIKRLHKNGTWENWKLIGGDTLLGITTTQENE-ILVCDADKG-LLKVTE---E  145 (239)
Q Consensus        78 gPe~ia~d~~G~ly~~~~-------~g~I~~~~~~G~~~~~~~~~~~p~~Gl~~d~~G~-L~v~d~~~g-~~~v~~---~  145 (239)
                      .+.++++|++|++|+++.       .+.|++++ +|+.+.+......++ +++++++|+ ||+++...+ +..++.   +
T Consensus       135 ~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~-~g~~~~~~~~~~~~~-~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~  212 (326)
T 2ghs_A          135 RSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA-KGKVTKLFADISIPN-SICFSPDGTTGYFVDTKVNRLMRVPLDART  212 (326)
T ss_dssp             EEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE-TTEEEEEEEEESSEE-EEEECTTSCEEEEEETTTCEEEEEEBCTTT
T ss_pred             CCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe-CCcEEEeeCCCcccC-CeEEcCCCCEEEEEECCCCEEEEEEccccc
Confidence            578899999999998763       37899999 787766555556789 999999995 899987654 455552   3


Q ss_pred             C-c----eEEecccCCccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecCCCCCc
Q 026389          146 G-V----TVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFA  220 (239)
Q Consensus       146 g-~----~~l~~~~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~~l~~p  220 (239)
                      | .    +.+.. ..+ ....|+++++|++|++|++...                 .++|++||++++.+..+......|
T Consensus       213 Gl~~~~~~~~~~-~~~-~~~~p~gi~~d~~G~lwva~~~-----------------~~~v~~~d~~g~~~~~i~~~~~~~  273 (326)
T 2ghs_A          213 GLPTGKAEVFID-STG-IKGGMDGSVCDAEGHIWNARWG-----------------EGAVDRYDTDGNHIARYEVPGKQT  273 (326)
T ss_dssp             CCBSSCCEEEEE-CTT-SSSEEEEEEECTTSCEEEEEET-----------------TTEEEEECTTCCEEEEEECSCSBE
T ss_pred             CCcccCceEEEE-CCC-CCCCCCeeEECCCCCEEEEEeC-----------------CCEEEEECCCCCEEEEEECCCCCc
Confidence            4 1    22322 111 1246899999999999999743                 478999999755555554445568


Q ss_pred             ceEEEc-CCCCEEEEEeC
Q 026389          221 NGVALS-KDEDYLVVCET  237 (239)
Q Consensus       221 nGia~s-~dg~~lyvadt  237 (239)
                      .+++|+ +|++.|||+..
T Consensus       274 ~~~af~g~d~~~L~vt~~  291 (326)
T 2ghs_A          274 TCPAFIGPDASRLLVTSA  291 (326)
T ss_dssp             EEEEEESTTSCEEEEEEB
T ss_pred             EEEEEecCCCCEEEEEec
Confidence            999998 89999999865

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.40  E-value=6.6e-12  Score=108.31  Aligned_cols=134  Identities=10%  Similarity=0.146  Sum_probs=99.3

Q ss_pred             CcceEEEcCCCCEEEEe--CCCeEEEEecC-CcEEEeeeccCcCccCeEEcCCCCEEEEeCCC-----------CeEEEc
Q 026389           78 GPEDVCVDRNGVLYTAT--RDGWIKRLHKN-GTWENWKLIGGDTLLGITTTQENEILVCDADK-----------GLLKVT  143 (239)
Q Consensus        78 gPe~ia~d~~G~ly~~~--~~g~I~~~~~~-G~~~~~~~~~~~p~~Gl~~d~~G~L~v~d~~~-----------g~~~v~  143 (239)
                      .|+++++ .++++|+++  .+++|..+|.. ++.......+..|. +++++++|++|++....           .+..+|
T Consensus       132 ~p~~i~~-~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g~~p~-~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id  209 (328)
T 3dsm_A          132 STEQMVQ-YGKYVYVNCWSYQNRILKIDTETDKVVDELTIGIQPT-SLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRID  209 (328)
T ss_dssp             BCCCEEE-ETTEEEEEECTTCCEEEEEETTTTEEEEEEECSSCBC-CCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEE
T ss_pred             CcceEEE-ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcCCCcc-ceEEcCCCCEEEEECCCccCCccccCCceEEEEE
Confidence            8999999 578999988  38899999974 56544445677899 99999999999998653           466677


Q ss_pred             c-CC-ceEEecccCCccccccccEEEcCCC-CEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEE--ecC-CC
Q 026389          144 E-EG-VTVLASHVNGSRINLADDLIAATDG-SIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSI--LLD-SL  217 (239)
Q Consensus       144 ~-~g-~~~l~~~~~g~~~~~pn~l~vd~dG-~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~--~~~-~l  217 (239)
                      . ++ +........|   ..|+++++++|| .+|+++.                    .|++||++++++..  +.. +.
T Consensus       210 ~~t~~v~~~~~~~~g---~~p~~la~~~d~~~lyv~~~--------------------~v~~~d~~t~~~~~~~~~~~~~  266 (328)
T 3dsm_A          210 AETFTVEKQFKFKLG---DWPSEVQLNGTRDTLYWINN--------------------DIWRMPVEADRVPVRPFLEFRD  266 (328)
T ss_dssp             TTTTEEEEEEECCTT---CCCEEEEECTTSCEEEEESS--------------------SEEEEETTCSSCCSSCSBCCCS
T ss_pred             CCCCeEEEEEecCCC---CCceeEEEecCCCEEEEEcc--------------------EEEEEECCCCceeeeeeecCCC
Confidence            4 45 3221121112   369999999986 7888862                    58999998877531  122 24


Q ss_pred             CCcceEEEcCCCCEEEEEe
Q 026389          218 FFANGVALSKDEDYLVVCE  236 (239)
Q Consensus       218 ~~pnGia~s~dg~~lyvad  236 (239)
                      ..|.||+++|++..|||++
T Consensus       267 ~~p~gi~vdp~~g~lyva~  285 (328)
T 3dsm_A          267 TKYYGLTVNPNNGEVYVAD  285 (328)
T ss_dssp             SCEEEEEECTTTCCEEEEE
T ss_pred             CceEEEEEcCCCCeEEEEc
Confidence            6899999999777899998

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.40  E-value=2.5e-11  Score=104.10  Aligned_cols=144  Identities=15%  Similarity=0.197  Sum_probs=101.2

Q ss_pred             cCCcceEEEcCCCCEEEEeC---CCeEEEEec-CCcEEEe---eeccCcCccCeEEcCCCC-EEEEeCCCCeEEE-c--c
Q 026389           76 LNGPEDVCVDRNGVLYTATR---DGWIKRLHK-NGTWENW---KLIGGDTLLGITTTQENE-ILVCDADKGLLKV-T--E  144 (239)
Q Consensus        76 ~~gPe~ia~d~~G~ly~~~~---~g~I~~~~~-~G~~~~~---~~~~~~p~~Gl~~d~~G~-L~v~d~~~g~~~v-~--~  144 (239)
                      ...|.+++++++|+||+++.   ++.|+.|+. +|+.+.+   ......|. +++++++|+ ||+++...+.+.+ +  .
T Consensus        39 ~~~p~~~a~spdg~l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~-~~a~spdg~~l~~~~~~~~~v~v~~~~~  117 (347)
T 3hfq_A           39 TQNPTYLALSAKDCLYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPA-YVAVDEARQLVYSANYHKGTAEVMKIAA  117 (347)
T ss_dssp             CSCCCCEEECTTCEEEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCS-EEEEETTTTEEEEEETTTTEEEEEEECT
T ss_pred             cCCcceEEEccCCeEEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCE-EEEECCCCCEEEEEeCCCCEEEEEEeCC
Confidence            47899999999999998774   588998886 4444332   33567899 999999996 8888866665544 3  3


Q ss_pred             CC-ceEEecc-cCCc------cccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCC-CCeEEEe--
Q 026389          145 EG-VTVLASH-VNGS------RINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPS-LNETSIL--  213 (239)
Q Consensus       145 ~g-~~~l~~~-~~g~------~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~-~~~~~~~--  213 (239)
                      +| .+.+... ..+.      ....++.++++|||++|+++..                 .++|+.|+.+ ++++..+  
T Consensus       118 ~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~-----------------~~~v~~~~~~~~g~~~~~~~  180 (347)
T 3hfq_A          118 DGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLG-----------------SDKVYVYNVSDAGQLSEQSV  180 (347)
T ss_dssp             TSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETT-----------------TTEEEEEEECTTSCEEEEEE
T ss_pred             CCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCC-----------------CCEEEEEEECCCCcEEEeee
Confidence            55 4433221 1111      1235778999999999998865                 4678888776 4655432  


Q ss_pred             --cCCCCCcceEEEcCCCCEEEEEeC
Q 026389          214 --LDSLFFANGVALSKDEDYLVVCET  237 (239)
Q Consensus       214 --~~~l~~pnGia~s~dg~~lyvadt  237 (239)
                        ......|++++|+|||+++|+++.
T Consensus       181 ~~~~~g~~p~~~~~spdg~~l~v~~~  206 (347)
T 3hfq_A          181 LTMEAGFGPRHLVFSPDGQYAFLAGE  206 (347)
T ss_dssp             EECCTTCCEEEEEECTTSSEEEEEET
T ss_pred             EEcCCCCCCceEEECCCCCEEEEEeC
Confidence              223347899999999999999864

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=99.39  E-value=4.9e-12  Score=110.79  Aligned_cols=143  Identities=18%  Similarity=0.204  Sum_probs=98.1

Q ss_pred             cCCcceEEEcCCCCEEEEeC--------------CCeEEEEecCCc--------------EEEeeeccCcCccCeEEcC-
Q 026389           76 LNGPEDVCVDRNGVLYTATR--------------DGWIKRLHKNGT--------------WENWKLIGGDTLLGITTTQ-  126 (239)
Q Consensus        76 ~~gPe~ia~d~~G~ly~~~~--------------~g~I~~~~~~G~--------------~~~~~~~~~~p~~Gl~~d~-  126 (239)
                      ...|.+|+++++|.||++..              .|+|+|++++|+              .+.+......|. |+++|+ 
T Consensus       134 ~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf~~~~~~~~~i~a~G~rnp~-g~a~d~~  212 (352)
T 2ism_A          134 LHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNPFLGRRGARPEVYSLGHRNPQ-GLAWHPK  212 (352)
T ss_dssp             CCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTTTTCTTSCTTEEEECCSEEC-CCEECTT
T ss_pred             CcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCcccCCCCCCccEEEEcCCCcc-cEEEECC
Confidence            45788999999999998852              279999999882              345555556799 999998 


Q ss_pred             CCCEEEEeCCCCe--------E-EEccCC-c---eEEec----ccCC-----ccccccccEEEcCCCCEEEEeCCCCcCc
Q 026389          127 ENEILVCDADKGL--------L-KVTEEG-V---TVLAS----HVNG-----SRINLADDLIAATDGSIYFSVASTKFGL  184 (239)
Q Consensus       127 ~G~L~v~d~~~g~--------~-~v~~~g-~---~~l~~----~~~g-----~~~~~pn~l~vd~dG~iy~td~~~~~~~  184 (239)
                      +|+||++|...+.        + .+.+.+ .   .....    .+..     .+...|.++++ .+|++|+++..     
T Consensus       213 ~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~ap~G~~~-~~G~l~v~~~~-----  286 (352)
T 2ism_A          213 TGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPLYFWPQGFPPGNLAF-FRGDLYVAGLR-----  286 (352)
T ss_dssp             TCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTTCCCEEEEEE-ETTEEEEEETT-----
T ss_pred             CCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCeEecCCCCCCcceEE-ECCEEEEEECC-----
Confidence            7899999977543        2 222211 0   00000    0000     12346889999 58999999875     


Q ss_pred             ccccccceeecCCceEEEEeCCCCe-------EEEecCCCCCcceEEEcCCCCEEEEEeCC
Q 026389          185 HNWGLDLLEAKPHGKLLKYDPSLNE-------TSILLDSLFFANGVALSKDEDYLVVCETF  238 (239)
Q Consensus       185 ~~~~~~~~e~~~~g~v~~~d~~~~~-------~~~~~~~l~~pnGia~s~dg~~lyvadt~  238 (239)
                                  .++|++++.++..       .+.++.....|.+|+++|||+ |||++..
T Consensus       287 ------------~~~v~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~-lyv~~~~  334 (352)
T 2ism_A          287 ------------GQALLRLVLEGERGRWRVLRVETALSGFGRLREVQVGPDGA-LYVTTSN  334 (352)
T ss_dssp             ------------TTEEEEEEEEEETTEEEEEEEEEEEESSCCEEEEEECTTSC-EEEEECS
T ss_pred             ------------CCEEEEEEECCCCcceeecchheecccCCCeeEEEECCCCc-EEEEEeC
Confidence                        4688888765321       234445667899999999996 8888764

>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*

Probab=99.39  E-value=2.4e-12  Score=118.23  Aligned_cols=76  Identities=17%  Similarity=0.174  Sum_probs=60.9

Q ss_pred             CCccccccccEEEcCCCCEEE-EeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecCC--CCCcceEEEcCCCCE
Q 026389          155 NGSRINLADDLIAATDGSIYF-SVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDS--LFFANGVALSKDEDY  231 (239)
Q Consensus       155 ~g~~~~~pn~l~vd~dG~iy~-td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~~--l~~pnGia~s~dg~~  231 (239)
                      .+.+|+.||+|++|++|+||| ||.+  ++...    ..+..++..||++++++++++.++.+  ...|||++|+||+++
T Consensus       471 ~~~~fnsPDnL~fd~~G~LWf~TD~~--~~~~g----~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~kt  544 (592)
T 4a9v_A          471 PQNMFNSPDGLGFDKAGRLWILTDGD--SSNAG----DFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKT  544 (592)
T ss_dssp             TTTCCCCEEEEEECTTCCEEEEECCC--CCCSG----GGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSE
T ss_pred             ccCccCCCCceEECCCCCEEEEeCCC--cCccc----cccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCE
Confidence            356899999999999999999 8976  33211    12233567999999999999988864  467999999999999


Q ss_pred             EEEEe
Q 026389          232 LVVCE  236 (239)
Q Consensus       232 lyvad  236 (239)
                      |||+-
T Consensus       545 LfV~v  549 (592)
T 4a9v_A          545 LFVGI  549 (592)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            99984

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.39  E-value=2.4e-11  Score=103.65  Aligned_cols=144  Identities=15%  Similarity=0.165  Sum_probs=104.2

Q ss_pred             CCcceEEEcCCC-CEEEEeC-------CCeEEEEec-CCcEEEeeeccCcCccCeEEcCCCC-EEEEeCCCCeEEE-c-c
Q 026389           77 NGPEDVCVDRNG-VLYTATR-------DGWIKRLHK-NGTWENWKLIGGDTLLGITTTQENE-ILVCDADKGLLKV-T-E  144 (239)
Q Consensus        77 ~gPe~ia~d~~G-~ly~~~~-------~g~I~~~~~-~G~~~~~~~~~~~p~~Gl~~d~~G~-L~v~d~~~g~~~v-~-~  144 (239)
                      .+|.+++++++| .+|+++.       +++|+.+|. +++..........|. +++++++|+ +|+++...+.+.+ + .
T Consensus        41 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~v~~~~~~~v~~~d~~  119 (353)
T 3vgz_A           41 KGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHNDLKPF-GATINNTTQTLWFGNTVNSAVTAIDAK  119 (353)
T ss_dssp             SSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEESSCCC-SEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             cCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecCCCcc-eEEECCCCCEEEEEecCCCEEEEEeCC
Confidence            578899999987 6887773       568999997 455544445567899 999999996 9999887665554 5 3


Q ss_pred             CC-c-eEEecccC----CccccccccEEEcCCCC-EEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecC-C
Q 026389          145 EG-V-TVLASHVN----GSRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLD-S  216 (239)
Q Consensus       145 ~g-~-~~l~~~~~----g~~~~~pn~l~vd~dG~-iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~-~  216 (239)
                      ++ . ..+.....    ......|.+++++++|+ +|+++..                ..++|++||.++++...... .
T Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~----------------~~~~i~~~d~~~~~~~~~~~~~  183 (353)
T 3vgz_A          120 TGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIG----------------KESVIWVVDGGNIKLKTAIQNT  183 (353)
T ss_dssp             TCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEES----------------SSCEEEEEETTTTEEEEEECCC
T ss_pred             CCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecC----------------CCceEEEEcCCCCceEEEecCC
Confidence            55 2 33321100    01112478999999985 8888733                14789999999888776665 4


Q ss_pred             CCCcceEEEcCCCCEEEEEeC
Q 026389          217 LFFANGVALSKDEDYLVVCET  237 (239)
Q Consensus       217 l~~pnGia~s~dg~~lyvadt  237 (239)
                      ...|++++++|||++||+++.
T Consensus       184 ~~~~~~~~~s~dg~~l~~~~~  204 (353)
T 3vgz_A          184 GKMSTGLALDSEGKRLYTTNA  204 (353)
T ss_dssp             CTTCCCCEEETTTTEEEEECT
T ss_pred             CCccceEEECCCCCEEEEEcC
Confidence            556999999999999999864

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=99.37  E-value=5.2e-11  Score=99.02  Aligned_cols=140  Identities=16%  Similarity=0.138  Sum_probs=102.3

Q ss_pred             cCCcceEEEcCCCCEEEEe-CCCeEEEEec-CCcEEEeeeccCcCccCeEEcCCCCEEEEeCCCCeEEEcc-CC--ceEE
Q 026389           76 LNGPEDVCVDRNGVLYTAT-RDGWIKRLHK-NGTWENWKLIGGDTLLGITTTQENEILVCDADKGLLKVTE-EG--VTVL  150 (239)
Q Consensus        76 ~~gPe~ia~d~~G~ly~~~-~~g~I~~~~~-~G~~~~~~~~~~~p~~Gl~~d~~G~L~v~d~~~g~~~v~~-~g--~~~l  150 (239)
                      -...||++++ +++||+.. .+++++.+|. +.+...-....+.+. |++.| .++||++|....+..+|+ +.  ...+
T Consensus        64 ~~fgeGi~~~-~~~ly~ltw~~~~v~v~D~~tl~~~~ti~~~~~Gw-glt~d-g~~L~vSdgs~~l~~iDp~t~~~~~~I  140 (243)
T 3mbr_X           64 PYFGAGIVAW-RDRLIQLTWRNHEGFVYDLATLTPRARFRYPGEGW-ALTSD-DSHLYMSDGTAVIRKLDPDTLQQVGSI  140 (243)
T ss_dssp             TCCEEEEEEE-TTEEEEEESSSSEEEEEETTTTEEEEEEECSSCCC-EEEEC-SSCEEEECSSSEEEEECTTTCCEEEEE
T ss_pred             CcceeEEEEe-CCEEEEEEeeCCEEEEEECCcCcEEEEEeCCCCce-EEeeC-CCEEEEECCCCeEEEEeCCCCeEEEEE
Confidence            3456888887 57899877 8899999997 455433233455677 77765 358999997666666774 43  3333


Q ss_pred             ecccCCccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecC--C------------
Q 026389          151 ASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLD--S------------  216 (239)
Q Consensus       151 ~~~~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~--~------------  216 (239)
                      .-...+.++.++|.+... +|+||+....                 ...|.++|+.++++...++  +            
T Consensus       141 ~V~~~g~~~~~lNeLe~~-~G~lyanvw~-----------------s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~  202 (243)
T 3mbr_X          141 KVTAGGRPLDNLNELEWV-NGELLANVWL-----------------TSRIARIDPASGKVVAWIDLQALVPDADALTDST  202 (243)
T ss_dssp             ECEETTEECCCEEEEEEE-TTEEEEEETT-----------------TTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTT
T ss_pred             EEccCCcccccceeeEEe-CCEEEEEECC-----------------CCeEEEEECCCCCEEEEEECCcCccccccccCCc
Confidence            333467788889999987 8999988854                 3689999999999865543  1            


Q ss_pred             CCCcceEEEcCCCCEEEEEe
Q 026389          217 LFFANGVALSKDEDYLVVCE  236 (239)
Q Consensus       217 l~~pnGia~s~dg~~lyvad  236 (239)
                      ...+||||++|++++|||+-
T Consensus       203 ~~vlNGIA~d~~~~~lfVTG  222 (243)
T 3mbr_X          203 NDVLNGIAFDAEHDRLFVTG  222 (243)
T ss_dssp             SSCEEEEEEETTTTEEEEEE
T ss_pred             CCceEEEEEcCCCCEEEEEC
Confidence            23679999999999999974

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=99.37  E-value=5.7e-11  Score=99.83  Aligned_cols=139  Identities=19%  Similarity=0.250  Sum_probs=102.0

Q ss_pred             CCcceEEEcCCCCEEEEe-CCCeEEEEec-CCcEEEeeeccCcCccCeEEcCCCCEEEEeCCCCeEEEcc-CC--ceEEe
Q 026389           77 NGPEDVCVDRNGVLYTAT-RDGWIKRLHK-NGTWENWKLIGGDTLLGITTTQENEILVCDADKGLLKVTE-EG--VTVLA  151 (239)
Q Consensus        77 ~gPe~ia~d~~G~ly~~~-~~g~I~~~~~-~G~~~~~~~~~~~p~~Gl~~d~~G~L~v~d~~~g~~~v~~-~g--~~~l~  151 (239)
                      ...||++++ +++||+.. .+++++.+|. +++...-....+.+. |++.|. ++||++|....+..+|+ +.  ...+.
T Consensus        96 ~FgeGit~~-g~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~~~eGw-GLt~Dg-~~L~vSdGs~~l~~iDp~T~~v~~~I~  172 (268)
T 3nok_A           96 IFAEGLASD-GERLYQLTWTEGLLFTWSGMPPQRERTTRYSGEGW-GLCYWN-GKLVRSDGGTMLTFHEPDGFALVGAVQ  172 (268)
T ss_dssp             CCEEEEEEC-SSCEEEEESSSCEEEEEETTTTEEEEEEECSSCCC-CEEEET-TEEEEECSSSEEEEECTTTCCEEEEEE
T ss_pred             cceeEEEEe-CCEEEEEEccCCEEEEEECCcCcEEEEEeCCCcee-EEecCC-CEEEEECCCCEEEEEcCCCCeEEEEEE
Confidence            456889987 46999887 7899999996 455433233456678 888763 58999996555666774 43  33333


Q ss_pred             cccCCccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecCC--------------C
Q 026389          152 SHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDS--------------L  217 (239)
Q Consensus       152 ~~~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~~--------------l  217 (239)
                      -...+.++.++|++... +|+||+....                 ...|.++|++++++...++-              .
T Consensus       173 V~~~g~~v~~lNeLe~~-dG~lyanvw~-----------------s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~  234 (268)
T 3nok_A          173 VKLRGQPVELINELECA-NGVIYANIWH-----------------SSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPE  234 (268)
T ss_dssp             CEETTEECCCEEEEEEE-TTEEEEEETT-----------------CSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTT
T ss_pred             eCCCCcccccccccEEe-CCEEEEEECC-----------------CCeEEEEeCCCCcEEEEEECCCCcccccccccCcC
Confidence            23466788889999988 8999998854                 46899999999998655431              1


Q ss_pred             CCcceEEEcCCCCEEEEEe
Q 026389          218 FFANGVALSKDEDYLVVCE  236 (239)
Q Consensus       218 ~~pnGia~s~dg~~lyvad  236 (239)
                      ..+||||++|++++|||+-
T Consensus       235 ~vlNGIA~dp~~~rlfVTG  253 (268)
T 3nok_A          235 AVLNGIAVEPGSGRIFMTG  253 (268)
T ss_dssp             CCEEEEEECTTTCCEEEEE
T ss_pred             CceEEEEEcCCCCEEEEeC
Confidence            3689999999999999974

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=99.37  E-value=1.1e-11  Score=105.81  Aligned_cols=136  Identities=15%  Similarity=0.150  Sum_probs=98.5

Q ss_pred             cCCcceEEEcCCCCEEEEe-CCCeEEEEecCC-cEEEee-----------eccCcCccCeEEcCCC-CEEEEeCCCCeEE
Q 026389           76 LNGPEDVCVDRNGVLYTAT-RDGWIKRLHKNG-TWENWK-----------LIGGDTLLGITTTQEN-EILVCDADKGLLK  141 (239)
Q Consensus        76 ~~gPe~ia~d~~G~ly~~~-~~g~I~~~~~~G-~~~~~~-----------~~~~~p~~Gl~~d~~G-~L~v~d~~~g~~~  141 (239)
                      ...|.+++..+++.+|+++ .+++|++++.++ +.+.+.           .....|+ ||  +++| .|||+|...+.+.
T Consensus       116 ~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pn-gi--s~dg~~lyv~d~~~~~I~  192 (306)
T 2p4o_A          116 AIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAAN-GL--KRFGNFLYVSNTEKMLLL  192 (306)
T ss_dssp             CSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEE-EE--EEETTEEEEEETTTTEEE
T ss_pred             ccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCC-Cc--CcCCCEEEEEeCCCCEEE
Confidence            4567888888788899888 689999999864 222221           1224688 88  5555 7999998866554


Q ss_pred             -EccC--C-c---eEEecccCCccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEe-
Q 026389          142 -VTEE--G-V---TVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSIL-  213 (239)
Q Consensus       142 -v~~~--g-~---~~l~~~~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~-  213 (239)
                       ++.+  | .   +.+..      +..|+++++|++|++|+++..                 +++|.+||++ +++..+ 
T Consensus       193 ~~~~~~~g~~~~~~~~~~------~~~P~gi~vd~dG~l~va~~~-----------------~~~V~~~~~~-G~~~~~~  248 (306)
T 2p4o_A          193 RIPVDSTDKPGEPEIFVE------QTNIDDFAFDVEGNLYGATHI-----------------YNSVVRIAPD-RSTTIIA  248 (306)
T ss_dssp             EEEBCTTSCBCCCEEEEE------SCCCSSEEEBTTCCEEEECBT-----------------TCCEEEECTT-CCEEEEE
T ss_pred             EEEeCCCCCCCccEEEec------cCCCCCeEECCCCCEEEEeCC-----------------CCeEEEECCC-CCEEEEe
Confidence             4532  4 2   22221      257999999999999999965                 5789999997 555432 


Q ss_pred             --cCCCCCcceEEEc---CCCCEEEEEeCC
Q 026389          214 --LDSLFFANGVALS---KDEDYLVVCETF  238 (239)
Q Consensus       214 --~~~l~~pnGia~s---~dg~~lyvadt~  238 (239)
                        ...+..|.+++|+   +|+++|||++..
T Consensus       249 ~~~~~~~~p~~~a~~g~~~d~~~LyVt~~~  278 (306)
T 2p4o_A          249 QAEQGVIGSTAVAFGQTEGDCTAIYVVTNG  278 (306)
T ss_dssp             CGGGTCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred             ecccccCCceEEEEecccCCCCEEEEECCC
Confidence              3456889999999   899999999863

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.34  E-value=9e-11  Score=100.04  Aligned_cols=140  Identities=11%  Similarity=0.139  Sum_probs=100.6

Q ss_pred             cceEEEcCCCC-EEEEe--CCCeEEEEecC-CcEEEeee-ccCcCccCeEEcCCCC-EEEEeCCCCeEEEc-cCC-ceEE
Q 026389           79 PEDVCVDRNGV-LYTAT--RDGWIKRLHKN-GTWENWKL-IGGDTLLGITTTQENE-ILVCDADKGLLKVT-EEG-VTVL  150 (239)
Q Consensus        79 Pe~ia~d~~G~-ly~~~--~~g~I~~~~~~-G~~~~~~~-~~~~p~~Gl~~d~~G~-L~v~d~~~g~~~v~-~~g-~~~l  150 (239)
                      |.+++++++|+ +|++.  .+++|+.+|.+ ++...... ....|. +++++++|+ ||+++....+..++ .++ ....
T Consensus       143 ~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~  221 (353)
T 3vgz_A          143 PRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMST-GLALDSEGKRLYTTNADGELITIDTADNKILSR  221 (353)
T ss_dssp             EEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCC-CCEEETTTTEEEEECTTSEEEEEETTTTEEEEE
T ss_pred             CceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccc-eEEECCCCCEEEEEcCCCeEEEEECCCCeEEEE
Confidence            78899999875 78776  47889999974 44433333 455689 999999985 88888766666677 455 2222


Q ss_pred             ecccCCccccccccEEEcCCCC-EEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecCCCCCcceEEEcCCC
Q 026389          151 ASHVNGSRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDE  229 (239)
Q Consensus       151 ~~~~~g~~~~~pn~l~vd~dG~-iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~~l~~pnGia~s~dg  229 (239)
                      .......+...+++++++++|+ +|+++..                 .+.|+.||..+++...... ...+.++++++||
T Consensus       222 ~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~-----------------~~~v~~~d~~~~~~~~~~~-~~~~~~~~~s~dg  283 (353)
T 3vgz_A          222 KKLLDDGKEHFFINISLDTARQRAFITDSK-----------------AAEVLVVDTRNGNILAKVA-APESLAVLFNPAR  283 (353)
T ss_dssp             EECCCSSSCCCEEEEEEETTTTEEEEEESS-----------------SSEEEEEETTTCCEEEEEE-CSSCCCEEEETTT
T ss_pred             EEcCCCCCCcccceEEECCCCCEEEEEeCC-----------------CCEEEEEECCCCcEEEEEE-cCCCceEEECCCC
Confidence            2211111334688999999995 8888754                 4789999998887654443 3457899999999


Q ss_pred             CEEEEEeC
Q 026389          230 DYLVVCET  237 (239)
Q Consensus       230 ~~lyvadt  237 (239)
                      +++|+++.
T Consensus       284 ~~l~v~~~  291 (353)
T 3vgz_A          284 NEAYVTHR  291 (353)
T ss_dssp             TEEEEEET
T ss_pred             CEEEEEEC
Confidence            99999875

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=99.32  E-value=7.2e-11  Score=103.50  Aligned_cols=145  Identities=14%  Similarity=0.200  Sum_probs=101.6

Q ss_pred             CCcCCcceEEEcCCCCEEEEeC--------------CCeEEEEecCCc---------EEEeeeccCcCccCeEEcC-CCC
Q 026389           74 GILNGPEDVCVDRNGVLYTATR--------------DGWIKRLHKNGT---------WENWKLIGGDTLLGITTTQ-ENE  129 (239)
Q Consensus        74 g~~~gPe~ia~d~~G~ly~~~~--------------~g~I~~~~~~G~---------~~~~~~~~~~p~~Gl~~d~-~G~  129 (239)
                      +....|.+|++++||.||++..              .|+|+|++++|+         .+.+......|. ||++|+ +|+
T Consensus       132 ~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~npf~~~~i~a~G~rnp~-Gla~d~~~g~  210 (354)
T 3a9g_A          132 AYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNPFPNSPIWSYGHRNPQ-GIDWHRASGV  210 (354)
T ss_dssp             CSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSSSTTCCEEEECCSCCC-EEEECTTTCC
T ss_pred             CCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCCCCCCcEEEEccCCcc-eEEEeCCCCC
Confidence            3356789999999999998752              379999999886         356666667799 999998 789


Q ss_pred             EEEEeCCCC----eEEEccCC-c--e-E--------Eecc--cCCccccccccEEE-------cCCCCEEEEeCCCCcCc
Q 026389          130 ILVCDADKG----LLKVTEEG-V--T-V--------LASH--VNGSRINLADDLIA-------ATDGSIYFSVASTKFGL  184 (239)
Q Consensus       130 L~v~d~~~g----~~~v~~~g-~--~-~--------l~~~--~~g~~~~~pn~l~v-------d~dG~iy~td~~~~~~~  184 (239)
                      ||++|...+    +-.+.+.+ .  . .        +...  .-+.+...|.++++       +.+|++|+++..     
T Consensus       211 l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~ap~G~~~y~g~~fp~~~G~l~v~~~~-----  285 (354)
T 3a9g_A          211 MVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVIDTGSETWAPSGASFVHGDMFPGLRGWLLIACLR-----  285 (354)
T ss_dssp             EEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTTCCCCEEEEEECCSSSCGGGTTEEEEEETT-----
T ss_pred             EEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEeecCCCCcCCcceEEECCCCCcccCCcEEEEEcC-----
Confidence            999998753    22332211 0  0 0        0000  00122346899999       568999999865     


Q ss_pred             ccccccceeecCCceEEEEeCCCC-eE---EEecCC-CCCcceEEEcCCCCEEEEEeC
Q 026389          185 HNWGLDLLEAKPHGKLLKYDPSLN-ET---SILLDS-LFFANGVALSKDEDYLVVCET  237 (239)
Q Consensus       185 ~~~~~~~~e~~~~g~v~~~d~~~~-~~---~~~~~~-l~~pnGia~s~dg~~lyvadt  237 (239)
                                  .++|++++.+.. ++   +.+..+ ...|.+|+++|||. |||++.
T Consensus       286 ------------~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pDG~-lyv~~~  330 (354)
T 3a9g_A          286 ------------GSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDDDGG-ILISTS  330 (354)
T ss_dssp             ------------TTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECTTSC-EEEEEC
T ss_pred             ------------CCEEEEEEECCCCcccceeeeccCCCCCeeEEEECCCCc-EEEEEe
Confidence                        478999987642 22   344443 56899999999996 888875

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.27  E-value=2.2e-10  Score=98.17  Aligned_cols=143  Identities=18%  Similarity=0.195  Sum_probs=94.5

Q ss_pred             cCCcceEEEcCCCC-EEEEe-CCCeEEEEec--CCcEEEeeec------------cCcCccCeEEcCCCCEEEEeCCCCe
Q 026389           76 LNGPEDVCVDRNGV-LYTAT-RDGWIKRLHK--NGTWENWKLI------------GGDTLLGITTTQENEILVCDADKGL  139 (239)
Q Consensus        76 ~~gPe~ia~d~~G~-ly~~~-~~g~I~~~~~--~G~~~~~~~~------------~~~p~~Gl~~d~~G~L~v~d~~~g~  139 (239)
                      ...|.+++++++|+ ||+++ .++.|..|+.  +|+.+.....            ...+. +++++++|++|+++...+.
T Consensus        85 ~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~-~~~~spdg~l~v~~~~~~~  163 (347)
T 3hfq_A           85 GTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIH-YTDLTPDNRLAVIDLGSDK  163 (347)
T ss_dssp             SCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEE-EEEECTTSCEEEEETTTTE
T ss_pred             CCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCce-EEEECCCCcEEEEeCCCCE
Confidence            46799999999997 78877 6788877774  4554332211            12366 7999999999999987775


Q ss_pred             EEE-c-c-CC-ceEEecccCCccccccccEEEcCCCC-EEEEeCCCCcCcccccccceeecCCceEEEE--eCCCCeEEE
Q 026389          140 LKV-T-E-EG-VTVLASHVNGSRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKY--DPSLNETSI  212 (239)
Q Consensus       140 ~~v-~-~-~g-~~~l~~~~~g~~~~~pn~l~vd~dG~-iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~--d~~~~~~~~  212 (239)
                      +.+ + . +| ...+... ....-..|++++++|||+ +|+++..                 .+++..|  +..+++.+.
T Consensus       164 v~~~~~~~~g~~~~~~~~-~~~~g~~p~~~~~spdg~~l~v~~~~-----------------~~~v~v~~~~~~~g~~~~  225 (347)
T 3hfq_A          164 VYVYNVSDAGQLSEQSVL-TMEAGFGPRHLVFSPDGQYAFLAGEL-----------------SSQIASLKYDTQTGAFTQ  225 (347)
T ss_dssp             EEEEEECTTSCEEEEEEE-ECCTTCCEEEEEECTTSSEEEEEETT-----------------TTEEEEEEEETTTTEEEE
T ss_pred             EEEEEECCCCcEEEeeeE-EcCCCCCCceEEECCCCCEEEEEeCC-----------------CCEEEEEEecCCCCceEE
Confidence            554 3 3 55 4333211 111123588999999996 8888765                 3455444  444566543


Q ss_pred             ecC--CC-------CCcceEEEcCCCCEEEEEeC
Q 026389          213 LLD--SL-------FFANGVALSKDEDYLVVCET  237 (239)
Q Consensus       213 ~~~--~l-------~~pnGia~s~dg~~lyvadt  237 (239)
                      +..  ..       ..|.+++|+|||++||+++.
T Consensus       226 ~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~  259 (347)
T 3hfq_A          226 LGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNR  259 (347)
T ss_dssp             EEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEE
T ss_pred             eeeeeecCCCCCCCCcceeEEECCCCCEEEEEeC
Confidence            321  11       34788999999999999875

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.23  E-value=4.6e-10  Score=95.19  Aligned_cols=141  Identities=11%  Similarity=0.088  Sum_probs=98.5

Q ss_pred             CCcce-EEEcCCCC-EEEEeCC-C--eEEEEecC-CcEEEeeeccCcCccCeEEcCCCC-EEEEeCCCCe-EEE-c--cC
Q 026389           77 NGPED-VCVDRNGV-LYTATRD-G--WIKRLHKN-GTWENWKLIGGDTLLGITTTQENE-ILVCDADKGL-LKV-T--EE  145 (239)
Q Consensus        77 ~gPe~-ia~d~~G~-ly~~~~~-g--~I~~~~~~-G~~~~~~~~~~~p~~Gl~~d~~G~-L~v~d~~~g~-~~v-~--~~  145 (239)
                      ..|.. ++++++|+ +|++..+ +  .|..|+.+ ++..........|. +++++++|+ ||+++...+. +.+ +  .+
T Consensus        83 ~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~-~~~~spdg~~l~~~~~~~~~~i~~~~~~~~  161 (331)
T 3u4y_A           83 QSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIPYDAV-GIAISPNGNGLILIDRSSANTVRRFKIDAD  161 (331)
T ss_dssp             SSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECCTTEE-EEEECTTSSCEEEEEETTTTEEEEEEECTT
T ss_pred             CCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECCCCcc-ceEECCCCCEEEEEecCCCceEEEEEECCC
Confidence            56778 99999987 5543344 3  89999974 55444445567789 999999995 9999876443 433 3  34


Q ss_pred             C-ceEE-ecccCCccccccccEEEcCCCC-EEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeE---EEecCCCCC
Q 026389          146 G-VTVL-ASHVNGSRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNET---SILLDSLFF  219 (239)
Q Consensus       146 g-~~~l-~~~~~g~~~~~pn~l~vd~dG~-iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~---~~~~~~l~~  219 (239)
                      | .... .....  ....|.++++++||+ +|+++..                 .+.|..||.++++.   .........
T Consensus       162 g~~~~~~~~~~~--~~~~~~~~~~spdg~~l~v~~~~-----------------~~~v~v~d~~~~~~~~~~~~~~~~~~  222 (331)
T 3u4y_A          162 GVLFDTGQEFIS--GGTRPFNITFTPDGNFAFVANLI-----------------GNSIGILETQNPENITLLNAVGTNNL  222 (331)
T ss_dssp             CCEEEEEEEEEC--SSSSEEEEEECTTSSEEEEEETT-----------------TTEEEEEECSSTTSCEEEEEEECSSC
T ss_pred             CcEeecCCcccc--CCCCccceEECCCCCEEEEEeCC-----------------CCeEEEEECCCCcccceeeeccCCCC
Confidence            4 2211 11111  123589999999996 8998864                 47899999987764   333444578


Q ss_pred             cceEEEcCCCCEEEEEeC
Q 026389          220 ANGVALSKDEDYLVVCET  237 (239)
Q Consensus       220 pnGia~s~dg~~lyvadt  237 (239)
                      |.+++|+|||++||++..
T Consensus       223 ~~~~~~spdg~~l~v~~~  240 (331)
T 3u4y_A          223 PGTIVVSRDGSTVYVLTE  240 (331)
T ss_dssp             CCCEEECTTSSEEEEECS
T ss_pred             CceEEECCCCCEEEEEEc
Confidence            999999999999999864

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.22  E-value=8.9e-10  Score=93.39  Aligned_cols=140  Identities=21%  Similarity=0.306  Sum_probs=96.5

Q ss_pred             CCcceEEEcCCCC-EEEEe-CCCe-EEEEe--cCCcEE----EeeeccCcCccCeEEcCCCC-EEEEeCCCCeEEE-c-c
Q 026389           77 NGPEDVCVDRNGV-LYTAT-RDGW-IKRLH--KNGTWE----NWKLIGGDTLLGITTTQENE-ILVCDADKGLLKV-T-E  144 (239)
Q Consensus        77 ~gPe~ia~d~~G~-ly~~~-~~g~-I~~~~--~~G~~~----~~~~~~~~p~~Gl~~d~~G~-L~v~d~~~g~~~v-~-~  144 (239)
                      ..|.+++++++|+ +|+++ .++. |..|+  .+|...    .....+..|. +++++++|+ ||+++...+.+.+ + .
T Consensus       128 ~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~spdg~~l~v~~~~~~~v~v~d~~  206 (331)
T 3u4y_A          128 YDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPF-NITFTPDGNFAFVANLIGNSIGILETQ  206 (331)
T ss_dssp             TTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEE-EEEECTTSSEEEEEETTTTEEEEEECS
T ss_pred             CCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCcc-ceEECCCCCEEEEEeCCCCeEEEEECC
Confidence            5789999999985 88776 5566 66555  445432    2223456788 999999997 8999877666655 4 3


Q ss_pred             CC-c-eEEecccCCccccccccEEEcCCCC-EEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEec---CC--
Q 026389          145 EG-V-TVLASHVNGSRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILL---DS--  216 (239)
Q Consensus       145 ~g-~-~~l~~~~~g~~~~~pn~l~vd~dG~-iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~---~~--  216 (239)
                      ++ . +.+.....+   ..|.++++++||+ +|++...                 .+.|+.||..+++++.+.   ..  
T Consensus       207 ~~~~~~~~~~~~~~---~~~~~~~~spdg~~l~v~~~~-----------------~~~i~~~d~~~~~~~~~~~~~~~~~  266 (331)
T 3u4y_A          207 NPENITLLNAVGTN---NLPGTIVVSRDGSTVYVLTES-----------------TVDVFNFNQLSGTLSFVKSFGHGLL  266 (331)
T ss_dssp             STTSCEEEEEEECS---SCCCCEEECTTSSEEEEECSS-----------------EEEEEEEETTTTEEEEEEEEECCCC
T ss_pred             CCcccceeeeccCC---CCCceEEECCCCCEEEEEEcC-----------------CCEEEEEECCCCceeeecccccccc
Confidence            55 3 222221122   4688999999997 8888654                 467999999888773331   11  


Q ss_pred             -----CCCcceEEEcCCCCEEEEEeC
Q 026389          217 -----LFFANGVALSKDEDYLVVCET  237 (239)
Q Consensus       217 -----l~~pnGia~s~dg~~lyvadt  237 (239)
                           ...+++++|+|||++||++..
T Consensus       267 ~~~~~~~~~~~~~~spdg~~l~v~~~  292 (331)
T 3u4y_A          267 IDPRPLFGANQMALNKTETKLFISAN  292 (331)
T ss_dssp             CCCGGGTTCCCEEECTTSSEEEEEET
T ss_pred             cCCCCcccccceEECCCCCEEEEecC
Confidence                 123467999999999999864

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=99.19  E-value=9.7e-11  Score=106.31  Aligned_cols=168  Identities=15%  Similarity=0.250  Sum_probs=110.3

Q ss_pred             ceEeccCCcCCcceEEEcCCCC--EEEEeCCCeEEEEecCCcE--EEe-------eec-----cCcCccCeEEcCC----
Q 026389           68 VTRLGEGILNGPEDVCVDRNGV--LYTATRDGWIKRLHKNGTW--ENW-------KLI-----GGDTLLGITTTQE----  127 (239)
Q Consensus        68 ~~~l~~g~~~gPe~ia~d~~G~--ly~~~~~g~I~~~~~~G~~--~~~-------~~~-----~~~p~~Gl~~d~~----  127 (239)
                      ++.+.++ +..|.+|++.++|.  ||++...|+|++++.+|..  +.+       ...     .+-.+ ||+++++    
T Consensus         6 v~~va~g-L~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gll-gia~~P~f~~n   83 (463)
T 2wg3_C            6 IQEVVSG-LRQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLL-SLAFHPNYKKN   83 (463)
T ss_dssp             EEEEEEE-ESSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEE-EEEECTTHHHH
T ss_pred             EEEeccC-CCCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcce-eeEeCCCCcCC
Confidence            5667766 89999999999984  9999999999999877642  111       111     23457 9999975    


Q ss_pred             CCEEEEeCC-------------CCeEEEc-cC--------C-ceEEecccCCccccccccEEEcCCCCEEEEeCCCCcCc
Q 026389          128 NEILVCDAD-------------KGLLKVT-EE--------G-VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGL  184 (239)
Q Consensus       128 G~L~v~d~~-------------~g~~~v~-~~--------g-~~~l~~~~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~  184 (239)
                      +.|||+.+.             ..++++. .+        . .+++.+.......++...|+++|||.|||+-.......
T Consensus        84 ~~lYv~yt~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~~~~~  163 (463)
T 2wg3_C           84 GKLYVSYTTNQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDGMITL  163 (463)
T ss_dssp             CEEEEEEEECCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCTTCCH
T ss_pred             CEEEEEEeCCCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCCCCCC
Confidence            789998542             1344443 11        1 24444322122335678899999999999966531110


Q ss_pred             ccccccceeecCCceEEEEeCCCC--------------------eEEEecCCCCCcceEEEcCC-----CC-EEEEEeC
Q 026389          185 HNWGLDLLEAKPHGKLLKYDPSLN--------------------ETSILLDSLFFANGVALSKD-----ED-YLVVCET  237 (239)
Q Consensus       185 ~~~~~~~~e~~~~g~v~~~d~~~~--------------------~~~~~~~~l~~pnGia~s~d-----g~-~lyvadt  237 (239)
                      .......-.....|+|+|+|+++.                    ..++...++.+|.|++|+++     |+ ++|++|.
T Consensus       164 ~~~~~~q~~~~~~GkIlRi~~dg~~~~~~y~iP~dNPf~~~~~~~~eI~a~G~RNp~gla~dp~tg~~~G~l~~~~~D~  242 (463)
T 2wg3_C          164 DDMEEMDGLSDFTGSVLRLDVDTDMCNVPYSIPRSNPHFNSTNQPPEVFAHGLHDPGRCAVDRHPTDININLTILCSDS  242 (463)
T ss_dssp             HHHHHCTTCCSCTTEEEEEBCCCCCSSCSCBCCTTSTTTTCSSSCTTEEEECCSSCCBEEEESSCSSTTCSEEEEEECC
T ss_pred             CccccccCcCCCCeeEEEEECCCCcccccCcCCCCCCCcCCCCCcccEEEECCCCcceEEECCCCCCcccceEEEeccc
Confidence            000000001233699999999863                    34678889999999999997     33 6788885

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.17  E-value=9.3e-10  Score=95.67  Aligned_cols=143  Identities=14%  Similarity=0.072  Sum_probs=93.6

Q ss_pred             cCCcceEEEcCCCC-EEEEeCCCeEEEEec--CCcEEEeee--ccCcCccCeEEcCCCC-EE--EEe-------C-----
Q 026389           76 LNGPEDVCVDRNGV-LYTATRDGWIKRLHK--NGTWENWKL--IGGDTLLGITTTQENE-IL--VCD-------A-----  135 (239)
Q Consensus        76 ~~gPe~ia~d~~G~-ly~~~~~g~I~~~~~--~G~~~~~~~--~~~~p~~Gl~~d~~G~-L~--v~d-------~-----  135 (239)
                      ...|.+++++++|+ ||+++.+ .|..|+.  +|+......  ..+.|. .++++++|+ ||  +++       .     
T Consensus        39 ~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~-~~~~spdg~~l~~~~~~~~~~~~~~~~~~~  116 (365)
T 1jof_A           39 DEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPR-ANDADTNTRAIFLLAAKQPPYAVYANPFYK  116 (365)
T ss_dssp             TCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGG-GGCTTSCCEEEEEEECSSTTCCEEEEEESS
T ss_pred             CCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCc-cEEECCCCCEEEEEEecCCcceeccceeec
Confidence            45799999999997 7887766 8877774  676543222  235688 999999997 23  443       1     


Q ss_pred             CCCeEEE---ccCC-ceEEecccCCccccccccEEEcCCCC-EEEEeCCCCcCcccccccceeecCCceEEEEeCC-CCe
Q 026389          136 DKGLLKV---TEEG-VTVLASHVNGSRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPS-LNE  209 (239)
Q Consensus       136 ~~g~~~v---~~~g-~~~l~~~~~g~~~~~pn~l~vd~dG~-iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~-~~~  209 (239)
                      ..+.+.+   +.+| ...............+++++++|||+ +|+++..                 .++|+.||.+ +++
T Consensus       117 ~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~-----------------~~~v~~~~~~~~g~  179 (365)
T 1jof_A          117 FAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLT-----------------ANKLWTHRKLASGE  179 (365)
T ss_dssp             SCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETT-----------------TTEEEEEEECTTSC
T ss_pred             CCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCC-----------------CCEEEEEEECCCCC
Confidence            2344433   2356 32111111001124689999999995 7888754                 3678888876 676


Q ss_pred             EEEec----C-CCCCcceEEEcCCCCEEEEEeC
Q 026389          210 TSILL----D-SLFFANGVALSKDEDYLVVCET  237 (239)
Q Consensus       210 ~~~~~----~-~l~~pnGia~s~dg~~lyvadt  237 (239)
                      ++.+.    . ....|.+++|+|||++||++..
T Consensus       180 ~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~  212 (365)
T 1jof_A          180 VELVGSVDAPDPGDHPRWVAMHPTGNYLYALME  212 (365)
T ss_dssp             EEEEEEEECSSTTCCEEEEEECTTSSEEEEEET
T ss_pred             EEEeeeEecCCCCCCCCEeEECCCCCEEEEEEC
Confidence            54331    1 2457999999999999999763

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.15  E-value=2e-09  Score=92.84  Aligned_cols=143  Identities=13%  Similarity=0.148  Sum_probs=93.3

Q ss_pred             CcceEEEcCCCC-EEEEe-CCCeEEEEec--CC-----c-EE-------EeeeccCcCccCeEEcCCCC-EEEEeCCCCe
Q 026389           78 GPEDVCVDRNGV-LYTAT-RDGWIKRLHK--NG-----T-WE-------NWKLIGGDTLLGITTTQENE-ILVCDADKGL  139 (239)
Q Consensus        78 gPe~ia~d~~G~-ly~~~-~~g~I~~~~~--~G-----~-~~-------~~~~~~~~p~~Gl~~d~~G~-L~v~d~~~g~  139 (239)
                      .|.+++++++|+ +|+++ .+++|..|+.  ++     + ..       ........|. +++++++|+ ||+++...+.
T Consensus       156 ~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~spdg~~l~v~~~~~~~  234 (361)
T 3scy_A          156 HLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPR-HLIFNSDGKFAYLINEIGGT  234 (361)
T ss_dssp             CEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEE-EEEECTTSSEEEEEETTTCE
T ss_pred             cceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCe-EEEEcCCCCEEEEEcCCCCe
Confidence            357799999997 88777 5788877753  23     2 21       1123356688 999999996 8899866665


Q ss_pred             EEEc--cCC-ceEEecc-cCCccccccccEEEcCCCC-EEEEeCCCCcCcccccccceeecCCce--EEEEeCCCCeEEE
Q 026389          140 LKVT--EEG-VTVLASH-VNGSRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGK--LLKYDPSLNETSI  212 (239)
Q Consensus       140 ~~v~--~~g-~~~l~~~-~~g~~~~~pn~l~vd~dG~-iy~td~~~~~~~~~~~~~~~e~~~~g~--v~~~d~~~~~~~~  212 (239)
                      +.+.  .+| .+.+... ........+.++++++||+ ||+++..                +.++  +|.+++.+++.+.
T Consensus       235 v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~----------------~~~~i~v~~~~~~~g~~~~  298 (361)
T 3scy_A          235 VIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRL----------------KADGVAIFKVDETNGTLTK  298 (361)
T ss_dssp             EEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECS----------------SSCEEEEEEECTTTCCEEE
T ss_pred             EEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCC----------------CCCEEEEEEEcCCCCcEEE
Confidence            5553  466 4433221 1111234578999999995 7887743                0234  4455545666543


Q ss_pred             ec--CCCCCcceEEEcCCCCEEEEEeC
Q 026389          213 LL--DSLFFANGVALSKDEDYLVVCET  237 (239)
Q Consensus       213 ~~--~~l~~pnGia~s~dg~~lyvadt  237 (239)
                      +.  ..-..|.+++|+|||++||++..
T Consensus       299 ~~~~~~g~~~~~~~~spdg~~l~~~~~  325 (361)
T 3scy_A          299 VGYQLTGIHPRNFIITPNGKYLLVACR  325 (361)
T ss_dssp             EEEEECSSCCCEEEECTTSCEEEEEET
T ss_pred             eeEecCCCCCceEEECCCCCEEEEEEC
Confidence            32  22457999999999999999874

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=99.15  E-value=3e-09  Score=89.73  Aligned_cols=145  Identities=14%  Similarity=0.107  Sum_probs=97.2

Q ss_pred             cceEeccCCcCCcceEEEcCCCCEEEEeC---CCeEEEEec-CCcEEEeeeccC--cCccCeEEcCCCCEEEEeCCCCeE
Q 026389           67 SVTRLGEGILNGPEDVCVDRNGVLYTATR---DGWIKRLHK-NGTWENWKLIGG--DTLLGITTTQENEILVCDADKGLL  140 (239)
Q Consensus        67 ~~~~l~~g~~~gPe~ia~d~~G~ly~~~~---~g~I~~~~~-~G~~~~~~~~~~--~p~~Gl~~d~~G~L~v~d~~~g~~  140 (239)
                      -++.+..+.-..|.|++++++|+||+++.   +++|.++|. +|++........  ++. |++++ .++||+++...+.+
T Consensus        11 vv~~~p~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fge-Gi~~~-g~~lyv~t~~~~~v   88 (266)
T 2iwa_A           11 VLNEFPHDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGE-GLTLL-NEKLYQVVWLKNIG   88 (266)
T ss_dssp             EEEEEECCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEE-EEEEE-TTEEEEEETTCSEE
T ss_pred             EEEEEECCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceE-EEEEe-CCEEEEEEecCCEE
Confidence            34566666556789999999899998863   589999996 577644333333  445 67776 35899999887776


Q ss_pred             EE-ccCCceEEecccCCccccccccEEEcCCC-CEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecC---
Q 026389          141 KV-TEEGVTVLASHVNGSRINLADDLIAATDG-SIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLD---  215 (239)
Q Consensus       141 ~v-~~~g~~~l~~~~~g~~~~~pn~l~vd~dG-~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~---  215 (239)
                      .+ |.+-.+++.....+    .+.+..+.+|| ++|+++.+                  ++|+.+|+++.++..-+.   
T Consensus        89 ~viD~~t~~v~~~i~~g----~~~g~glt~Dg~~l~vs~gs------------------~~l~viD~~t~~v~~~I~Vg~  146 (266)
T 2iwa_A           89 FIYDRRTLSNIKNFTHQ----MKDGWGLATDGKILYGSDGT------------------SILYEIDPHTFKLIKKHNVKY  146 (266)
T ss_dssp             EEEETTTTEEEEEEECC----SSSCCEEEECSSSEEEECSS------------------SEEEEECTTTCCEEEEEECEE
T ss_pred             EEEECCCCcEEEEEECC----CCCeEEEEECCCEEEEECCC------------------CeEEEEECCCCcEEEEEEECC
Confidence            65 43222333221111    13455566676 89999843                  799999999876543322   


Q ss_pred             ---CCCCcceEEEcCCCCEEEEEeC
Q 026389          216 ---SLFFANGVALSKDEDYLVVCET  237 (239)
Q Consensus       216 ---~l~~pnGia~s~dg~~lyvadt  237 (239)
                         .+.+||++++. || .||++..
T Consensus       147 ~~~p~~~~nele~~-dg-~lyvn~~  169 (266)
T 2iwa_A          147 NGHRVIRLNELEYI-NG-EVWANIW  169 (266)
T ss_dssp             TTEECCCEEEEEEE-TT-EEEEEET
T ss_pred             CCcccccceeEEEE-CC-EEEEecC
Confidence               24579999998 66 6998864

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.11  E-value=8.3e-09  Score=87.11  Aligned_cols=141  Identities=13%  Similarity=0.168  Sum_probs=96.6

Q ss_pred             CCcceEEEcCCCC-EEEEeCC-CeEEEEecC---CcEEEe--eeccCcCccCeEEcCCCC-EEEEeCCCCeEEE-c-cCC
Q 026389           77 NGPEDVCVDRNGV-LYTATRD-GWIKRLHKN---GTWENW--KLIGGDTLLGITTTQENE-ILVCDADKGLLKV-T-EEG  146 (239)
Q Consensus        77 ~gPe~ia~d~~G~-ly~~~~~-g~I~~~~~~---G~~~~~--~~~~~~p~~Gl~~d~~G~-L~v~d~~~g~~~v-~-~~g  146 (239)
                      ..|.+++++++|+ ||++..+ ++|..|+.+   |+.+..  ....+.|. +++++++|+ ||++....+.+.+ + .+|
T Consensus        38 ~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~  116 (343)
T 1ri6_A           38 GQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLT-HISTDHQGQFVFVGSYNAGNVSVTRLEDG  116 (343)
T ss_dssp             SCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCS-EEEECTTSSEEEEEETTTTEEEEEEEETT
T ss_pred             CCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCCCCc-EEEEcCCCCEEEEEecCCCeEEEEECCCC
Confidence            5789999999987 7887754 888887753   454322  22345788 999999996 8888876665544 3 344


Q ss_pred             -ceEEecccCCccccccccEEEcCCCC-EEEEeCCCCcCcccccccceeecCCceEEEEeCCC-CeEEEe------cCCC
Q 026389          147 -VTVLASHVNGSRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSL-NETSIL------LDSL  217 (239)
Q Consensus       147 -~~~l~~~~~g~~~~~pn~l~vd~dG~-iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~-~~~~~~------~~~l  217 (239)
                       .........+  ...+.+++++++|+ +|+++..                 .++|+.||..+ +++...      ....
T Consensus       117 ~~~~~~~~~~~--~~~~~~~~~s~dg~~l~~~~~~-----------------~~~v~~~d~~~~~~~~~~~~~~~~~~~~  177 (343)
T 1ri6_A          117 LPVGVVDVVEG--LDGCHSANISPDNRTLWVPALK-----------------QDRICLFTVSDDGHLVAQDPAEVTTVEG  177 (343)
T ss_dssp             EEEEEEEEECC--CTTBCCCEECTTSSEEEEEEGG-----------------GTEEEEEEECTTSCEEEEEEEEEECSTT
T ss_pred             ccccccccccC--CCCceEEEECCCCCEEEEecCC-----------------CCEEEEEEecCCCceeeecccccccCCC
Confidence             2222222222  13488999999995 8887733                 47888888776 655422      2234


Q ss_pred             CCcceEEEcCCCCEEEEEeC
Q 026389          218 FFANGVALSKDEDYLVVCET  237 (239)
Q Consensus       218 ~~pnGia~s~dg~~lyvadt  237 (239)
                      ..|++++++|||+++|++..
T Consensus       178 ~~~~~~~~~pdg~~l~~~~~  197 (343)
T 1ri6_A          178 AGPRHMVFHPNEQYAYCVNE  197 (343)
T ss_dssp             CCEEEEEECTTSSEEEEEET
T ss_pred             CCcceEEECCCCCEEEEEeC
Confidence            57899999999999998863

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=99.06  E-value=1.3e-09  Score=95.25  Aligned_cols=140  Identities=14%  Similarity=0.151  Sum_probs=94.7

Q ss_pred             CCcceEEEcCCCCEEEEeC--------------CCeEEEEecCCc--------------EEEeeeccCcCccCeEEcC-C
Q 026389           77 NGPEDVCVDRNGVLYTATR--------------DGWIKRLHKNGT--------------WENWKLIGGDTLLGITTTQ-E  127 (239)
Q Consensus        77 ~gPe~ia~d~~G~ly~~~~--------------~g~I~~~~~~G~--------------~~~~~~~~~~p~~Gl~~d~-~  127 (239)
                      ..+.+|++++||.||++..              .|+|+|++++|+              .+.+......|. |+++|+ +
T Consensus       130 h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~p~~npf~~~~~~~~~i~a~G~rnp~-gl~~d~~~  208 (353)
T 2g8s_A          130 HFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEIPDDNPFIKESGVRAEIWSYGIRNPQ-GMAMNPWS  208 (353)
T ss_dssp             CCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCCCTTCTTTTSTTSCTTEEEECCSEEE-EEEEETTT
T ss_pred             ccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCCCCCCCCcCCCCCCccEEEEcCcCcc-ceEEECCC
Confidence            4578999999999998862              369999999885              345665566799 999998 8


Q ss_pred             CCEEEEeCCCC----eEEEccCC-c---eE----------Ee----cccCC--------ccccccccEEEcC-------C
Q 026389          128 NEILVCDADKG----LLKVTEEG-V---TV----------LA----SHVNG--------SRINLADDLIAAT-------D  170 (239)
Q Consensus       128 G~L~v~d~~~g----~~~v~~~g-~---~~----------l~----~~~~g--------~~~~~pn~l~vd~-------d  170 (239)
                      |+||++|....    +.++.+.+ .   ..          +.    ....+        .+...|.++++..       +
T Consensus       209 g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~ap~G~~~y~g~~fp~~~  288 (353)
T 2g8s_A          209 NALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKIPEAKGEIVAGTEQPVFYWKDSPAVSGMAFYNSDKFPQWQ  288 (353)
T ss_dssp             TEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCCTTCCBSSCTTSCCCSEEESSCCCEEEEEEECCSSSGGGT
T ss_pred             CCEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCccCcccCCCCCCccCCeEEeCCCcCcceeEEECCccCcccC
Confidence            99999997632    22222211 1   00          00    00000        0123688888864       5


Q ss_pred             CCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeE---EEecCC-CCCcceEEEcCCCCEEEEE
Q 026389          171 GSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNET---SILLDS-LFFANGVALSKDEDYLVVC  235 (239)
Q Consensus       171 G~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~---~~~~~~-l~~pnGia~s~dg~~lyva  235 (239)
                      |.+||++..                 .++|++++.++++.   +.++.+ ...|.+|+++|||+ |||+
T Consensus       289 g~l~v~~~~-----------------~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~-lyv~  339 (353)
T 2g8s_A          289 QKLFIGALK-----------------DKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGPDGY-LYVL  339 (353)
T ss_dssp             TEEEEEETT-----------------TTEEEEEEEETTEEEEEEEESGGGCCCEEEEEECTTSC-EEEE
T ss_pred             CcEEEEEcc-----------------CCEEEEEEeCCCeEeeeEEcccCCCCceeEEEECCCCc-EEEE
Confidence            889999865                 57899988775543   223333 45899999999998 7875

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.06  E-value=1.8e-08  Score=87.21  Aligned_cols=138  Identities=14%  Similarity=0.206  Sum_probs=101.9

Q ss_pred             CCcceEEEcCCCC-EEEEe-CCCeEEEEec-CCcEEEeeeccCcCccCeEEcCCCC-EEEEeCCCCeEEE-c-cCC-ceE
Q 026389           77 NGPEDVCVDRNGV-LYTAT-RDGWIKRLHK-NGTWENWKLIGGDTLLGITTTQENE-ILVCDADKGLLKV-T-EEG-VTV  149 (239)
Q Consensus        77 ~gPe~ia~d~~G~-ly~~~-~~g~I~~~~~-~G~~~~~~~~~~~p~~Gl~~d~~G~-L~v~d~~~g~~~v-~-~~g-~~~  149 (239)
                      ..+.+++++++|. ||++. .++.|..|+. +|+..........+. +++++++|+ ||++....+.+++ + .++ ...
T Consensus        32 ~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~~v~-~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~  110 (391)
T 1l0q_A           32 SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSPQ-GVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAG  110 (391)
T ss_dssp             SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSSEE-EEEECTTSSEEEEEETTTTEEEEEETTTTEEEE
T ss_pred             CCcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCCCcc-ceEECCCCCEEEEEECCCCEEEEEECCCCeEEE
Confidence            4688999999986 65554 8999999996 566544444455788 999999996 7788876566665 4 345 222


Q ss_pred             EecccCCccccccccEEEcCCCC-EEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecCCCCCcceEEEcCC
Q 026389          150 LASHVNGSRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKD  228 (239)
Q Consensus       150 l~~~~~g~~~~~pn~l~vd~dG~-iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~~l~~pnGia~s~d  228 (239)
                      ....  +   ..+.+++++++|+ +|++...                 .+.|+.||..+++.......-..++++++++|
T Consensus       111 ~~~~--~---~~~~~~~~s~dg~~l~~~~~~-----------------~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~d  168 (391)
T 1l0q_A          111 TVKT--G---KSPLGLALSPDGKKLYVTNNG-----------------DKTVSVINTVTKAVINTVSVGRSPKGIAVTPD  168 (391)
T ss_dssp             EEEC--S---SSEEEEEECTTSSEEEEEETT-----------------TTEEEEEETTTTEEEEEEECCSSEEEEEECTT
T ss_pred             EEeC--C---CCcceEEECCCCCEEEEEeCC-----------------CCEEEEEECCCCcEEEEEecCCCcceEEECCC
Confidence            2211  1   2468999999995 7788754                 57999999988887666665677899999999


Q ss_pred             CCEEEEEeC
Q 026389          229 EDYLVVCET  237 (239)
Q Consensus       229 g~~lyvadt  237 (239)
                      |+.||++..
T Consensus       169 g~~l~~~~~  177 (391)
T 1l0q_A          169 GTKVYVANF  177 (391)
T ss_dssp             SSEEEEEET
T ss_pred             CCEEEEEeC
Confidence            999988754

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=99.03  E-value=1.1e-08  Score=89.44  Aligned_cols=143  Identities=12%  Similarity=0.172  Sum_probs=97.1

Q ss_pred             cCCcceEEEcCCCCEEEEe--------------CCCeEEEEecCCc---------EEEeeeccCcCccCeEEcCCCCEEE
Q 026389           76 LNGPEDVCVDRNGVLYTAT--------------RDGWIKRLHKNGT---------WENWKLIGGDTLLGITTTQENEILV  132 (239)
Q Consensus        76 ~~gPe~ia~d~~G~ly~~~--------------~~g~I~~~~~~G~---------~~~~~~~~~~p~~Gl~~d~~G~L~v  132 (239)
                      ......|++++||.||++.              ..|+|+|++++|+         .+.|......|. |+++|++|+||+
T Consensus       139 ~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip~~nPf~~~~i~a~G~RNp~-Gla~dp~G~L~~  217 (347)
T 3das_A          139 IHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPAPGNPFPGSPVYSYGHRNVQ-GLAWDDKQRLFA  217 (347)
T ss_dssp             SCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBCTTCSSTTCCEEEBCCSBCC-EEEECTTCCEEE
T ss_pred             CccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCccCCCCCCCCeEEeeCCCCcc-eEEECCCCCEEE
Confidence            4567789999999999874              2489999999886         245666667799 999999999999


Q ss_pred             EeCCCC----eEEEccCC-c--eEE-ec----ccCC------ccccccccEEEcCCCCEEEEeCCCCcCcccccccceee
Q 026389          133 CDADKG----LLKVTEEG-V--TVL-AS----HVNG------SRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEA  194 (239)
Q Consensus       133 ~d~~~g----~~~v~~~g-~--~~l-~~----~~~g------~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~  194 (239)
                      +|.+..    +-++.+.+ .  ... ..    ....      .....|.|+++. +|.+|+++..               
T Consensus       218 ~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~~~~ap~G~~~~-~g~~~~~~l~---------------  281 (347)
T 3das_A          218 SEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWSTDEASPSGIAYA-EGSVWMAGLR---------------  281 (347)
T ss_dssp             EECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEECTTTCCEEEEEEE-TTEEEEEEST---------------
T ss_pred             EecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecCCCCCCCcceEEE-cCceeecccc---------------
Confidence            997642    22332221 1  000 00    0000      011367899998 5899998754               


Q ss_pred             cCCceEEEEeCCCC----eEEEecCC-CCCcceEEEcCCCCEEEEEeCC
Q 026389          195 KPHGKLLKYDPSLN----ETSILLDS-LFFANGVALSKDEDYLVVCETF  238 (239)
Q Consensus       195 ~~~g~v~~~d~~~~----~~~~~~~~-l~~pnGia~s~dg~~lyvadt~  238 (239)
                        .++|+++..+.+    +.+.++.+ ...|.+|++.|||. |||++..
T Consensus       282 --~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~pDG~-lyv~td~  327 (347)
T 3das_A          282 --GERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAGGDK-LWLVTSN  327 (347)
T ss_dssp             --TCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEEETTE-EEEEECT
T ss_pred             --CCEEEEEEecCCceecceEEeecCCCCCccEEEECCCCc-EEEEEcC
Confidence              357877765433    23455554 56899999999996 8888764

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.03  E-value=1.5e-08  Score=85.56  Aligned_cols=142  Identities=11%  Similarity=0.141  Sum_probs=92.2

Q ss_pred             CcceEEEcCCCC-EEEEe-CCCeEEEEec-CCcE---EEeeeccCcCccCeEEcCCCC-EEEEeCCCCeEEE-c-cC-C-
Q 026389           78 GPEDVCVDRNGV-LYTAT-RDGWIKRLHK-NGTW---ENWKLIGGDTLLGITTTQENE-ILVCDADKGLLKV-T-EE-G-  146 (239)
Q Consensus        78 gPe~ia~d~~G~-ly~~~-~~g~I~~~~~-~G~~---~~~~~~~~~p~~Gl~~d~~G~-L~v~d~~~g~~~v-~-~~-g-  146 (239)
                      .|.+++++++|+ ||++. .++.|..|+. +|+.   .........+. +++++++|+ ||+++...+.+.+ + .. + 
T Consensus        85 ~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~  163 (343)
T 1ri6_A           85 SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCH-SANISPDNRTLWVPALKQDRICLFTVSDDGH  163 (343)
T ss_dssp             CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBC-CCEECTTSSEEEEEEGGGTEEEEEEECTTSC
T ss_pred             CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCCCCce-EEEECCCCCEEEEecCCCCEEEEEEecCCCc
Confidence            789999999987 77776 5788888876 4432   22223445688 999999995 8888855555544 4 33 6 


Q ss_pred             ceEEec-ccCCccccccccEEEcCCCC-EEEEeCCCCcCcccccccceeecCCceEEEEeCC--CCeEEE---ec---CC
Q 026389          147 VTVLAS-HVNGSRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPS--LNETSI---LL---DS  216 (239)
Q Consensus       147 ~~~l~~-~~~g~~~~~pn~l~vd~dG~-iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~--~~~~~~---~~---~~  216 (239)
                      ...+.. ......-..|.+++++++|+ +|+++..                 .+++..|+.+  +++.+.   +.   .+
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~-----------------~~~i~~~~~~~~~g~~~~~~~~~~~~~~  226 (343)
T 1ri6_A          164 LVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNEL-----------------NSSVDVWELKDPHGNIECVQTLDMMPEN  226 (343)
T ss_dssp             EEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETT-----------------TTEEEEEESSCTTSCCEEEEEEECSCTT
T ss_pred             eeeecccccccCCCCCcceEEECCCCCEEEEEeCC-----------------CCEEEEEEecCCCCcEEEEeeccccCcc
Confidence            332210 01111113578999999996 8888754                 4678888874  344321   11   11


Q ss_pred             ---CCCcceEEEcCCCCEEEEEeC
Q 026389          217 ---LFFANGVALSKDEDYLVVCET  237 (239)
Q Consensus       217 ---l~~pnGia~s~dg~~lyvadt  237 (239)
                         ...+.+++++|||++||++..
T Consensus       227 ~~~~~~~~~i~~s~dg~~l~v~~~  250 (343)
T 1ri6_A          227 FSDTRWAADIHITPDGRHLYACDR  250 (343)
T ss_dssp             CCSCCCEEEEEECTTSSEEEEEET
T ss_pred             ccccCCccceEECCCCCEEEEEec
Confidence               234568999999999998864

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.03  E-value=2.1e-08  Score=86.27  Aligned_cols=142  Identities=15%  Similarity=0.266  Sum_probs=91.7

Q ss_pred             cCCcceEEEcCCCC-EEEEeCC----CeEE--EEecC-CcEEEeee---ccCcCccCeEEcCCC-CEEEEeCCCCeEEEc
Q 026389           76 LNGPEDVCVDRNGV-LYTATRD----GWIK--RLHKN-GTWENWKL---IGGDTLLGITTTQEN-EILVCDADKGLLKVT  143 (239)
Q Consensus        76 ~~gPe~ia~d~~G~-ly~~~~~----g~I~--~~~~~-G~~~~~~~---~~~~p~~Gl~~d~~G-~L~v~d~~~g~~~v~  143 (239)
                      ...|..++++++|+ ||+++.+    +.|.  .++.+ |+.+.+..   ....|. ++++  +| .||+++...+.+.+.
T Consensus        49 ~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~-~~~~--dg~~l~~~~~~~~~v~~~  125 (361)
T 3scy_A           49 VANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPC-YLTT--NGKNIVTANYSGGSITVF  125 (361)
T ss_dssp             CSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEE-EEEE--CSSEEEEEETTTTEEEEE
T ss_pred             CCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcE-EEEE--CCCEEEEEECCCCEEEEE
Confidence            57899999999986 7877754    6774  55554 65543322   345788 8888  55 589998776766553


Q ss_pred             ---cCC-ceEEec--ccCC-------ccccccccEEEcCCCC-EEEEeCCCCcCcccccccceeecCCceEEEE--eCCC
Q 026389          144 ---EEG-VTVLAS--HVNG-------SRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKY--DPSL  207 (239)
Q Consensus       144 ---~~g-~~~l~~--~~~g-------~~~~~pn~l~vd~dG~-iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~--d~~~  207 (239)
                         .+| ...+..  ...+       ....++++++++|||+ +|+++..                 .+++..|  +..+
T Consensus       126 ~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~-----------------~~~v~v~~~~~~~  188 (361)
T 3scy_A          126 PIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLG-----------------TDQIHKFNINPNA  188 (361)
T ss_dssp             EBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETT-----------------TTEEEEEEECTTC
T ss_pred             EeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCC-----------------CCEEEEEEEcCCC
Confidence               244 322211  0111       1123568899999996 8998864                 3556555  4444


Q ss_pred             C----e-E-------EEecCCCCCcceEEEcCCCCEEEEEeC
Q 026389          208 N----E-T-------SILLDSLFFANGVALSKDEDYLVVCET  237 (239)
Q Consensus       208 ~----~-~-------~~~~~~l~~pnGia~s~dg~~lyvadt  237 (239)
                      +    + +       .........|++++|+|||+++|+++.
T Consensus       189 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~  230 (361)
T 3scy_A          189 NADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINE  230 (361)
T ss_dssp             CTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEET
T ss_pred             CcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcC
Confidence            3    2 2       222344567899999999999999873

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=99.03  E-value=4.7e-09  Score=90.81  Aligned_cols=140  Identities=11%  Similarity=0.055  Sum_probs=95.2

Q ss_pred             CcceEEE---cCCCCEEEEeC--------------CCeEEEEecC----CcEEEeee--------------ccCcCccCe
Q 026389           78 GPEDVCV---DRNGVLYTATR--------------DGWIKRLHKN----GTWENWKL--------------IGGDTLLGI  122 (239)
Q Consensus        78 gPe~ia~---d~~G~ly~~~~--------------~g~I~~~~~~----G~~~~~~~--------------~~~~p~~Gl  122 (239)
                      .|.||.+   |++|+||+...              +..|+++|.+    |+......              ..+.++ ++
T Consensus        64 ~~sGl~~~~~D~~grL~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~n-Dv  142 (334)
T 2p9w_A           64 QMSGLSLLTHDNSKRLFAVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVV-QS  142 (334)
T ss_dssp             EEEEEEESSSSSCCEEEEEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEE-EE
T ss_pred             eeeEEEEeccCCCCcEEEEEcccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCc-ee
Confidence            4689999   78999997432              5789999976    65432222              113588 99


Q ss_pred             EEcCCCCEEEEeCCC--CeEEEccCC--ceEEeccc-CCccccccccEEEcCCCC-EEEEeCCCCcCcccccccceeecC
Q 026389          123 TTTQENEILVCDADK--GLLKVTEEG--VTVLASHV-NGSRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKP  196 (239)
Q Consensus       123 ~~d~~G~L~v~d~~~--g~~~v~~~g--~~~l~~~~-~g~~~~~pn~l~vd~dG~-iy~td~~~~~~~~~~~~~~~e~~~  196 (239)
                      ++|++|+.||+++..  .+++++++|  ...+.... .......+|||++.|||+ |++.+.                  
T Consensus       143 avD~~GnaYVt~s~~~~~I~rV~pdG~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~------------------  204 (334)
T 2p9w_A          143 AQDRDGNSYVAFALGMPAIARVSADGKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGG------------------  204 (334)
T ss_dssp             EECTTSCEEEEEEESSCEEEEECTTSCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESS------------------
T ss_pred             EECCCCCEEEeCCCCCCeEEEEeCCCCEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcC------------------
Confidence            999999999987643  477888888  33332211 122345689999999996 555553                  


Q ss_pred             CceEEEEeCCCCeEE--EecC------CCCCcceE-EEcCCCCEEEEEeC
Q 026389          197 HGKLLKYDPSLNETS--ILLD------SLFFANGV-ALSKDEDYLVVCET  237 (239)
Q Consensus       197 ~g~v~~~d~~~~~~~--~~~~------~l~~pnGi-a~s~dg~~lyvadt  237 (239)
                      .|+|++||.+. .++  +-..      .+..|.|| +.-.+|+.|+|++.
T Consensus       205 ~g~L~~fD~~~-pv~~~v~~~~~G~~~~~~~~dgilp~~~~G~vllV~~~  253 (334)
T 2p9w_A          205 PRALTAFDVSK-PYAWPEPVKINGDFGTLSGTEKIVTVPVGNESVLVGAR  253 (334)
T ss_dssp             SSSEEEEECSS-SSCCCEECEESSCCCCCTTEEEEEEEEETTEEEEEEEE
T ss_pred             CCeEEEEcCCC-CcceeecccccCCcccccCcccccccccCCEEEEEEcC
Confidence            38999999863 222  1121      35678996 55568988899874

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.02  E-value=2.2e-08  Score=86.63  Aligned_cols=136  Identities=16%  Similarity=0.230  Sum_probs=100.8

Q ss_pred             CcceEEEcCCCC-EEEEe-CCCeEEEEecC-CcEEEeeeccCcCccCeEEcCCCC-EEEEeCCCCeEEEc--cCC-ceEE
Q 026389           78 GPEDVCVDRNGV-LYTAT-RDGWIKRLHKN-GTWENWKLIGGDTLLGITTTQENE-ILVCDADKGLLKVT--EEG-VTVL  150 (239)
Q Consensus        78 gPe~ia~d~~G~-ly~~~-~~g~I~~~~~~-G~~~~~~~~~~~p~~Gl~~d~~G~-L~v~d~~~g~~~v~--~~g-~~~l  150 (239)
                      .+.+++++++|. ||++. .++.|..|+.. ++..........+. +++++++|+ ||++....+.+++.  .++ ....
T Consensus        75 ~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~  153 (391)
T 1l0q_A           75 SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPL-GLALSPDGKKLYVTNNGDKTVSVINTVTKAVINT  153 (391)
T ss_dssp             SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEE-EEEECTTSSEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred             CccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCCCCcc-eEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEE
Confidence            788999999886 66665 67999999974 45444444556778 999999996 76888767766664  345 2222


Q ss_pred             ecccCCccccccccEEEcCCC-CEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecCCCCCcceEEEcCCC
Q 026389          151 ASHVNGSRINLADDLIAATDG-SIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDE  229 (239)
Q Consensus       151 ~~~~~g~~~~~pn~l~vd~dG-~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~~l~~pnGia~s~dg  229 (239)
                      ...  +   ..+..++++++| .+|++...                 .+.|+.||..+++..........+.++++++||
T Consensus       154 ~~~--~---~~~~~~~~~~dg~~l~~~~~~-----------------~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~g  211 (391)
T 1l0q_A          154 VSV--G---RSPKGIAVTPDGTKVYVANFD-----------------SMSISVIDTVTNSVIDTVKVEAAPSGIAVNPEG  211 (391)
T ss_dssp             EEC--C---SSEEEEEECTTSSEEEEEETT-----------------TTEEEEEETTTTEEEEEEECSSEEEEEEECTTS
T ss_pred             Eec--C---CCcceEEECCCCCEEEEEeCC-----------------CCEEEEEECCCCeEEEEEecCCCccceEECCCC
Confidence            111  1   346899999999 56777654                 578999999888876666555678999999999


Q ss_pred             CEEEEEe
Q 026389          230 DYLVVCE  236 (239)
Q Consensus       230 ~~lyvad  236 (239)
                      ++||++.
T Consensus       212 ~~l~~~~  218 (391)
T 1l0q_A          212 TKAYVTN  218 (391)
T ss_dssp             SEEEEEE
T ss_pred             CEEEEEe
Confidence            9999886

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.01  E-value=4.3e-08  Score=82.41  Aligned_cols=136  Identities=8%  Similarity=-0.032  Sum_probs=88.0

Q ss_pred             CcceEEEcCCC-CEEEEe------------CCCeEEEEecC-CcEEEeeeccCcCccCeEEcCCCC-EEEEeCCCCeEEE
Q 026389           78 GPEDVCVDRNG-VLYTAT------------RDGWIKRLHKN-GTWENWKLIGGDTLLGITTTQENE-ILVCDADKGLLKV  142 (239)
Q Consensus        78 gPe~ia~d~~G-~ly~~~------------~~g~I~~~~~~-G~~~~~~~~~~~p~~Gl~~d~~G~-L~v~d~~~g~~~v  142 (239)
                      .|.+++++++| .+|++.            .+++|+.++.+ ++..........+. +++++++|+ ||+++  ..+..+
T Consensus        83 ~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~--~~i~~~  159 (337)
T 1pby_B           83 SLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQIT-MLAWARDGSKLYGLG--RDLHVM  159 (337)
T ss_dssp             CTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSCC-CEEECTTSSCEEEES--SSEEEE
T ss_pred             cccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeCCCCcc-eeEECCCCCEEEEeC--CeEEEE
Confidence            68899999988 577775            46999999974 44433344466788 999999996 88883  345555


Q ss_pred             c-cCC-c-eEEecccCCccc------------------------------------------------------------
Q 026389          143 T-EEG-V-TVLASHVNGSRI------------------------------------------------------------  159 (239)
Q Consensus       143 ~-~~g-~-~~l~~~~~g~~~------------------------------------------------------------  159 (239)
                      + .++ . ..+.......+.                                                            
T Consensus       160 d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~  239 (337)
T 1pby_B          160 DPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIM  239 (337)
T ss_dssp             ETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEEC
T ss_pred             ECCCCcEeeeeeccccCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCC
Confidence            6 344 2 222110000000                                                            


Q ss_pred             -cccccEEEcCCCC-EEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecCCCCCcceEEEcCCCCEEEEEe
Q 026389          160 -NLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCE  236 (239)
Q Consensus       160 -~~pn~l~vd~dG~-iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~~l~~pnGia~s~dg~~lyvad  236 (239)
                       ..++++++++||+ +|++                    .++|+.||.++++.......-..|.+++|+|||++||++.
T Consensus       240 ~~~~~~~~~s~dg~~l~~~--------------------~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~  298 (337)
T 1pby_B          240 DVFYFSTAVNPAKTRAFGA--------------------YNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLGG  298 (337)
T ss_dssp             SSCEEEEEECTTSSEEEEE--------------------ESEEEEEETTTTEEEEEEECSSCCCEEEECTTSCEEEEES
T ss_pred             CCceeeEEECCCCCEEEEe--------------------CCeEEEEECCCCcCcceecCCCceeeEEECCCCCEEEEEc
Confidence             1123345555542 3333                    2679999998887765554456799999999999999873

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=98.99  E-value=1.5e-08  Score=87.95  Aligned_cols=148  Identities=12%  Similarity=0.109  Sum_probs=95.1

Q ss_pred             CCcceEEEcCCCC-EEEEe-CCCeEEEEecC--CcEEEee--e--c-cCcCccCeEEcCCC-CEEEEeCCCCeEEE---c
Q 026389           77 NGPEDVCVDRNGV-LYTAT-RDGWIKRLHKN--GTWENWK--L--I-GGDTLLGITTTQEN-EILVCDADKGLLKV---T  143 (239)
Q Consensus        77 ~gPe~ia~d~~G~-ly~~~-~~g~I~~~~~~--G~~~~~~--~--~-~~~p~~Gl~~d~~G-~L~v~d~~~g~~~v---~  143 (239)
                      ..|.+++++++|+ ||+++ .+++|+.|+.+  |+.+...  .  . +..|. +++++++| .||+++...+.+.+   +
T Consensus       145 ~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~-~~~~spdg~~l~v~~~~~~~v~v~~~~  223 (365)
T 1jof_A          145 TGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPR-WVAMHPTGNYLYALMEAGNRICEYVID  223 (365)
T ss_dssp             CCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEE-EEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred             CcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCC-EeEECCCCCEEEEEECCCCeEEEEEEe
Confidence            5788999999996 77776 56899988864  6654321  1  1 45688 99999999 48888876555544   3


Q ss_pred             c-CC-ceE----EecccCC-cccc-------ccccEE-EcCCCC-EEEEeCCCCcCcccccccceeecCCceEEEEeCC-
Q 026389          144 E-EG-VTV----LASHVNG-SRIN-------LADDLI-AATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPS-  206 (239)
Q Consensus       144 ~-~g-~~~----l~~~~~g-~~~~-------~pn~l~-vd~dG~-iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~-  206 (239)
                      . +| ...    +.....+ ....       .+.+++ ++|||+ ||+++.....            ...++|..|+.+ 
T Consensus       224 ~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~------------~~~~~i~v~~~~~  291 (365)
T 1jof_A          224 PATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKF------------ELQGYIAGFKLRD  291 (365)
T ss_dssp             TTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESST------------TSCCEEEEEEECT
T ss_pred             CCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCC------------CCCCeEEEEEECC
Confidence            2 45 321    2111111 0112       588999 999994 7887643110            012366666653 


Q ss_pred             CCeEEEe---c-CCCCCcceEEEcC---CCCEEEEEeC
Q 026389          207 LNETSIL---L-DSLFFANGVALSK---DEDYLVVCET  237 (239)
Q Consensus       207 ~~~~~~~---~-~~l~~pnGia~s~---dg~~lyvadt  237 (239)
                      +++++.+   . .....|.+++|+|   ||++||+++.
T Consensus       292 ~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~  329 (365)
T 1jof_A          292 CGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDD  329 (365)
T ss_dssp             TSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECS
T ss_pred             CCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEEc
Confidence            5666542   2 2345789999999   8999999864

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=98.98  E-value=7.1e-09  Score=90.91  Aligned_cols=135  Identities=12%  Similarity=0.113  Sum_probs=93.4

Q ss_pred             CCcceEEEcC--CC--CEEEEeCC---C--eEEEEecCCcEEEeee-----ccCcCccCeEEcCCCCEEEEeCC------
Q 026389           77 NGPEDVCVDR--NG--VLYTATRD---G--WIKRLHKNGTWENWKL-----IGGDTLLGITTTQENEILVCDAD------  136 (239)
Q Consensus        77 ~gPe~ia~d~--~G--~ly~~~~~---g--~I~~~~~~G~~~~~~~-----~~~~p~~Gl~~d~~G~L~v~d~~------  136 (239)
                      ..|.||.+.+  +|  +||+.++.   .  .|++++++++..++..     ...+|+ .++++++|++|+++..      
T Consensus       112 f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pN-D~~v~~~G~fyvt~~~~ftd~~  190 (355)
T 3sre_A          112 FNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVN-DIVAVGPEHFYATNDHYFIDPY  190 (355)
T ss_dssp             CCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEE-EEEEEETTEEEEEESCSCSSHH
T ss_pred             eeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCc-eEEEeCCCCEEecCCcEeCCcc
Confidence            3799999865  45  57887733   2  3777887765433322     346789 9999999999999752      


Q ss_pred             ------------CCeEEEccCCceEEecccCCccccccccEEEcCCC-CEEEEeCCCCcCcccccccceeecCCceEEEE
Q 026389          137 ------------KGLLKVTEEGVTVLASHVNGSRINLADDLIAATDG-SIYFSVASTKFGLHNWGLDLLEAKPHGKLLKY  203 (239)
Q Consensus       137 ------------~g~~~v~~~g~~~l~~~~~g~~~~~pn~l~vd~dG-~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~  203 (239)
                                  .+++++++...+++.+     .+.+|||++++||| .+|++|+.                 .++|++|
T Consensus       191 ~~~~e~~~~~~~g~vyr~d~~~~~~~~~-----~l~~pNGia~spDg~~lYvadt~-----------------~~~I~~~  248 (355)
T 3sre_A          191 LKSWEMHLGLAWSFVTYYSPNDVRVVAE-----GFDFANGINISPDGKYVYIAELL-----------------AHKIHVY  248 (355)
T ss_dssp             HHHHHHHTTCCCEEEEEECTTCCEEEEE-----EESSEEEEEECTTSSEEEEEEGG-----------------GTEEEEE
T ss_pred             cccchhhccCCccEEEEEECCeEEEeec-----CCcccCcceECCCCCEEEEEeCC-----------------CCeEEEE
Confidence                        1355665533454432     35789999999999 79999976                 4689888


Q ss_pred             eCC-CCeE---EEecCCCCCcceEEEcC-CCCEEEEEe
Q 026389          204 DPS-LNET---SILLDSLFFANGVALSK-DEDYLVVCE  236 (239)
Q Consensus       204 d~~-~~~~---~~~~~~l~~pnGia~s~-dg~~lyvad  236 (239)
                      +.+ .+++   +++ .-...|.|+++++ +|+ ||++.
T Consensus       249 ~~~~~g~l~~~~~~-~~~g~PDGi~vD~e~G~-lwva~  284 (355)
T 3sre_A          249 EKHANWTLTPLRVL-SFDTLVDNISVDPVTGD-LWVGC  284 (355)
T ss_dssp             EECTTSCEEEEEEE-ECSSEEEEEEECTTTCC-EEEEE
T ss_pred             EECCCCcEecCEEE-eCCCCCceEEEeCCCCc-EEEEe
Confidence            864 2433   233 3346799999999 597 77753

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=98.98  E-value=4.7e-08  Score=82.39  Aligned_cols=137  Identities=11%  Similarity=0.027  Sum_probs=95.6

Q ss_pred             CCcceEEEcCCCCEEEEeCCCeEEEEecCCcEEEeeecc--CcCccCeEEcCCCCEEEEeCC-C-CeEEEccCC--ceEE
Q 026389           77 NGPEDVCVDRNGVLYTATRDGWIKRLHKNGTWENWKLIG--GDTLLGITTTQENEILVCDAD-K-GLLKVTEEG--VTVL  150 (239)
Q Consensus        77 ~gPe~ia~d~~G~ly~~~~~g~I~~~~~~G~~~~~~~~~--~~p~~Gl~~d~~G~L~v~d~~-~-g~~~v~~~g--~~~l  150 (239)
                      ..+.+++++++|++|+ +.+++|+.++++|+...-....  .... +..+.++|+++|++.. . .++.++++|  +..+
T Consensus        37 ~~~~~~~~~pdG~ilv-s~~~~V~~~d~~G~~~W~~~~~~~~~~~-~~~~~~dG~~lv~~~~~~~~v~~vd~~Gk~l~~~  114 (276)
T 3no2_A           37 WECNSVAATKAGEILF-SYSKGAKMITRDGRELWNIAAPAGCEMQ-TARILPDGNALVAWCGHPSTILEVNMKGEVLSKT  114 (276)
T ss_dssp             CCCCEEEECTTSCEEE-ECBSEEEEECTTSCEEEEEECCTTCEEE-EEEECTTSCEEEEEESTTEEEEEECTTSCEEEEE
T ss_pred             CCCcCeEECCCCCEEE-eCCCCEEEECCCCCEEEEEcCCCCcccc-ccEECCCCCEEEEecCCCCEEEEEeCCCCEEEEE
Confidence            4688999999999999 5678899999988743212221  2445 6778899999999875 4 455667777  2222


Q ss_pred             ecccC-CccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecCCCCCcceEEEcCCC
Q 026389          151 ASHVN-GSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDE  229 (239)
Q Consensus       151 ~~~~~-g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~~l~~pnGia~s~dg  229 (239)
                      .-... ..++..+.+++++++|++++++..                 +++|+.||++++.+-.+.. -..|.++++.++|
T Consensus       115 ~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~-----------------~~~v~~~d~~G~~~w~~~~-~~~~~~~~~~~~g  176 (276)
T 3no2_A          115 EFETGIERPHAQFRQINKNKKGNYLVPLFA-----------------TSEVREIAPNGQLLNSVKL-SGTPFSSAFLDNG  176 (276)
T ss_dssp             EECCSCSSGGGSCSCCEECTTSCEEEEETT-----------------TTEEEEECTTSCEEEEEEC-SSCCCEEEECTTS
T ss_pred             eccCCCCcccccccCceECCCCCEEEEecC-----------------CCEEEEECCCCCEEEEEEC-CCCccceeEcCCC
Confidence            11111 124456889999999999999875                 5899999998443333332 3568889999888


Q ss_pred             CEEE
Q 026389          230 DYLV  233 (239)
Q Consensus       230 ~~ly  233 (239)
                      +.++
T Consensus       177 ~~~v  180 (276)
T 3no2_A          177 DCLV  180 (276)
T ss_dssp             CEEE
T ss_pred             CEEE
Confidence            8554

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=98.92  E-value=7.7e-08  Score=80.86  Aligned_cols=140  Identities=9%  Similarity=0.060  Sum_probs=90.0

Q ss_pred             EEEEeCCCeEEEEecC-CcEEEeeeccC---cCccCeEEcCCC-CEEEEeCCCCeEE-Ec-cCC--ceEEecccCCcccc
Q 026389           90 LYTATRDGWIKRLHKN-GTWENWKLIGG---DTLLGITTTQEN-EILVCDADKGLLK-VT-EEG--VTVLASHVNGSRIN  160 (239)
Q Consensus        90 ly~~~~~g~I~~~~~~-G~~~~~~~~~~---~p~~Gl~~d~~G-~L~v~d~~~g~~~-v~-~~g--~~~l~~~~~g~~~~  160 (239)
                      ++++..+++|..||.. ++.........   .|. +++++++| .+|++....+.+. ++ .++  ...+.....+..-.
T Consensus         4 ~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~   82 (337)
T 1pby_B            4 ILAPARPDKLVVIDTEKMAVDKVITIADAGPTPM-VPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVK   82 (337)
T ss_dssp             EEEEETTTEEEEEETTTTEEEEEEECTTCTTCCC-CEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEE
T ss_pred             EEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCcc-ceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccc
Confidence            4456688999999964 55433334444   699 99999999 5888887665554 45 455  22232111111112


Q ss_pred             ccccEEEcCCC-CEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecCCCCCcceEEEcCCCCEEEEEe
Q 026389          161 LADDLIAATDG-SIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCE  236 (239)
Q Consensus       161 ~pn~l~vd~dG-~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~~l~~pnGia~s~dg~~lyvad  236 (239)
                      .+.++++++|| .+|+++.........     . ....+.|+.||.++++.......-..|++++++|||++||+++
T Consensus        83 ~~~~~~~s~dg~~l~~~~~~~~~~~~~-----~-~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~  153 (337)
T 1pby_B           83 SLFGAALSPDGKTLAIYESPVRLELTH-----F-EVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLG  153 (337)
T ss_dssp             CTTCEEECTTSSEEEEEEEEEEECSSC-----E-EECCCEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEES
T ss_pred             cccceEECCCCCEEEEEeccccccccc-----c-cccCceEEEEECCCCcEEEEEeCCCCcceeEECCCCCEEEEeC
Confidence            58899999999 688886220000000     0 0024789999998887765555456789999999999998873

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=98.92  E-value=6.1e-08  Score=84.99  Aligned_cols=152  Identities=18%  Similarity=0.220  Sum_probs=103.9

Q ss_pred             CCcceEEEcCCC-CEEEEe--------CCCeEEEEec-CCcEEEeeeccCcCccCeEEcCCC-CEEEEeCCCCeEEEc--
Q 026389           77 NGPEDVCVDRNG-VLYTAT--------RDGWIKRLHK-NGTWENWKLIGGDTLLGITTTQEN-EILVCDADKGLLKVT--  143 (239)
Q Consensus        77 ~gPe~ia~d~~G-~ly~~~--------~~g~I~~~~~-~G~~~~~~~~~~~p~~Gl~~d~~G-~L~v~d~~~g~~~v~--  143 (239)
                      ..+.+++++++| .+|++.        .+|.|+.|+. +++..........+. +++++++| .+|++....+.+.+.  
T Consensus       254 ~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~-~~~~~~~g~~l~~~~~~~~~v~v~d~  332 (433)
T 3bws_A          254 GLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGPPGNKR-HIVSGNTENKIYVSDMCCSKIEVYDL  332 (433)
T ss_dssp             SEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEEEECEE-EEEECSSTTEEEEEETTTTEEEEEET
T ss_pred             CCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeeccCCCCcc-eEEECCCCCEEEEEecCCCEEEEEEC
Confidence            358899999988 566666        3789999996 455433333345788 99999999 488887777777665  


Q ss_pred             cCC-ceEEecccCCccccccccEEEcCCCC-EEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecCCCCCcc
Q 026389          144 EEG-VTVLASHVNGSRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFAN  221 (239)
Q Consensus       144 ~~g-~~~l~~~~~g~~~~~pn~l~vd~dG~-iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~~l~~pn  221 (239)
                      .++ .......     ...+.+++++++|+ +|++.......   ....+..+...|+|+.||..+++..........+.
T Consensus       333 ~~~~~~~~~~~-----~~~~~~~~~s~dg~~l~~~~~~~~~~---~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~~~~~~  404 (433)
T 3bws_A          333 KEKKVQKSIPV-----FDKPNTIALSPDGKYLYVSCRGPNHP---TEGYLKKGLVLGKVYVIDTTTDTVKEFWEAGNQPT  404 (433)
T ss_dssp             TTTEEEEEEEC-----SSSEEEEEECTTSSEEEEEECCCCCT---TTCTTSCCSSCCEEEEEETTTTEEEEEEECSSSEE
T ss_pred             CCCcEEEEecC-----CCCCCeEEEcCCCCEEEEEecCCCcc---ccccccccccceEEEEEECCCCcEEEEecCCCCCc
Confidence            345 2222211     13478999999995 77776542100   00112233446899999998888776666667899


Q ss_pred             eEEEcCCCCEEEEEeC
Q 026389          222 GVALSKDEDYLVVCET  237 (239)
Q Consensus       222 Gia~s~dg~~lyvadt  237 (239)
                      +++++|||++|+++..
T Consensus       405 ~~~~s~dg~~l~~~~~  420 (433)
T 3bws_A          405 GLDVSPDNRYLVISDF  420 (433)
T ss_dssp             EEEECTTSCEEEEEET
T ss_pred             eEEEcCCCCEEEEEEC
Confidence            9999999999998754

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=98.92  E-value=7e-08  Score=81.66  Aligned_cols=97  Identities=14%  Similarity=0.148  Sum_probs=62.1

Q ss_pred             CcceEEEcCCCC-EEEEe-CCCeEEEEecC-CcEEEeeec-------cCcCccCeEEcCCCC-EEEEeCC----------
Q 026389           78 GPEDVCVDRNGV-LYTAT-RDGWIKRLHKN-GTWENWKLI-------GGDTLLGITTTQENE-ILVCDAD----------  136 (239)
Q Consensus        78 gPe~ia~d~~G~-ly~~~-~~g~I~~~~~~-G~~~~~~~~-------~~~p~~Gl~~d~~G~-L~v~d~~----------  136 (239)
                      .|.+++++++|+ +|++. .+++|+.++.+ ++.......       ...+. +++++++|+ ||++...          
T Consensus        44 ~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~-~~~~spdg~~l~~~~~~~~~~~~~~~~  122 (349)
T 1jmx_B           44 GPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMY-SFAISPDGKEVYATVNPTQRLNDHYVV  122 (349)
T ss_dssp             SSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSS-CEEECTTSSEEEEEEEEEEECSSCEEE
T ss_pred             CCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEccccccccccccc-ceEECCCCCEEEEEccccccccccccc
Confidence            689999999986 77766 68899999974 554322222       22378 999999995 7777643          


Q ss_pred             --CCeEEEc-cCC-ceEEecccCCccccccccEEEcCCCCEEEEe
Q 026389          137 --KGLLKVT-EEG-VTVLASHVNGSRINLADDLIAATDGSIYFSV  177 (239)
Q Consensus       137 --~g~~~v~-~~g-~~~l~~~~~g~~~~~pn~l~vd~dG~iy~td  177 (239)
                        ..+..++ .++ ...........  ..+.++++++||++|+++
T Consensus       123 ~~~~i~~~d~~~~~~~~~~~~~~~~--~~~~~~~~s~dg~l~~~~  165 (349)
T 1jmx_B          123 KPPRLEVFSTADGLEAKPVRTFPMP--RQVYLMRAADDGSLYVAG  165 (349)
T ss_dssp             CCCEEEEEEGGGGGGBCCSEEEECC--SSCCCEEECTTSCEEEES
T ss_pred             CCCeEEEEECCCccccceeeeccCC--CcccceeECCCCcEEEcc
Confidence              3344445 343 21111111111  247788999999988864

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.90  E-value=1.4e-07  Score=78.91  Aligned_cols=147  Identities=9%  Similarity=0.060  Sum_probs=95.1

Q ss_pred             EeccCCcCCcceEEEcCCCCEEEEe-CCCeEEEEe--cCCcEEEe--ee-c-cCcC-----ccCeEEcCCC-CEEEEeCC
Q 026389           70 RLGEGILNGPEDVCVDRNGVLYTAT-RDGWIKRLH--KNGTWENW--KL-I-GGDT-----LLGITTTQEN-EILVCDAD  136 (239)
Q Consensus        70 ~l~~g~~~gPe~ia~d~~G~ly~~~-~~g~I~~~~--~~G~~~~~--~~-~-~~~p-----~~Gl~~d~~G-~L~v~d~~  136 (239)
                      ++..+....+|||+++.+|.+|+++ .+++++.++  .+++....  .. . ...+     - ||++|+++ +||++...
T Consensus        63 ~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~E-GLA~d~~~~~L~va~E~  141 (255)
T 3qqz_A           63 TIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFE-GLAYSRQDHTFWFFKEK  141 (255)
T ss_dssp             EEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCE-EEEEETTTTEEEEEEES
T ss_pred             EEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcCCCCeeeeeeeeccccccccccCCcc-eEEEeCCCCEEEEEECc
Confidence            4433445789999999999888877 678888776  34542211  11 1 1223     6 99999877 79998643


Q ss_pred             -C-CeEEEc--cCC--ceEEecc-c-CCccccccccEEEcCC-CCEEEEeCCCCcCcccccccceeecCCceEEEEeCCC
Q 026389          137 -K-GLLKVT--EEG--VTVLASH-V-NGSRINLADDLIAATD-GSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSL  207 (239)
Q Consensus       137 -~-g~~~v~--~~g--~~~l~~~-~-~g~~~~~pn~l~vd~d-G~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~  207 (239)
                       . .++.++  ..+  .+++... . ....+.-+.++++||. |++|+....                 +.+|+.+|.++
T Consensus       142 ~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~-----------------s~~L~~~d~~g  204 (255)
T 3qqz_A          142 NPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSHE-----------------SRALQEVTLVG  204 (255)
T ss_dssp             SSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEEEETTTTEEEEEETT-----------------TTEEEEECTTC
T ss_pred             CCceEEEEcccccCCceeeecchhhccccccCCceeEEEcCCCCeEEEEECC-----------------CCeEEEEcCCC
Confidence             2 566666  222  3443210 0 1112345789999997 889987765                 46889999875


Q ss_pred             CeEEEe--cCC-------CCCcceEEEcCCCCEEEEE
Q 026389          208 NETSIL--LDS-------LFFANGVALSKDEDYLVVC  235 (239)
Q Consensus       208 ~~~~~~--~~~-------l~~pnGia~s~dg~~lyva  235 (239)
                      ..+..+  ..+       +..|.|||++++|+ |||+
T Consensus       205 ~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~-lyIv  240 (255)
T 3qqz_A          205 EVIGEMSLTKGSRGLSHNIKQAEGVAMDASGN-IYIV  240 (255)
T ss_dssp             CEEEEEECSTTGGGCSSCCCSEEEEEECTTCC-EEEE
T ss_pred             CEEEEEEcCCccCCcccccCCCCeeEECCCCC-EEEE
Confidence            533322  222       46899999999998 6665

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=98.87  E-value=1.6e-07  Score=79.24  Aligned_cols=94  Identities=15%  Similarity=0.247  Sum_probs=65.0

Q ss_pred             ceEEEcCCCCEEEEeCCCeEEEEecCCcEE-EeeeccCcCccCeEEcCCCCEEEEeCCCCeEEEccCCceEEecccCCcc
Q 026389           80 EDVCVDRNGVLYTATRDGWIKRLHKNGTWE-NWKLIGGDTLLGITTTQENEILVCDADKGLLKVTEEGVTVLASHVNGSR  158 (239)
Q Consensus        80 e~ia~d~~G~ly~~~~~g~I~~~~~~G~~~-~~~~~~~~p~~Gl~~d~~G~L~v~d~~~g~~~v~~~g~~~l~~~~~g~~  158 (239)
                      .+++.+++|.||+++.++.|++++++|+.. .+........ .+.+|.+|+||++.  .+++.++.+|..........  
T Consensus       140 ~~~~~~~~g~l~vgt~~~~l~~~d~~g~~~~~~~~~~~~~~-~~~~d~~g~l~v~t--~~l~~~d~~g~~~~~~~~~~--  214 (330)
T 3hxj_A          140 ATPIVSEDGTIYVGSNDNYLYAINPDGTEKWRFKTNDAITS-AASIGKDGTIYFGS--DKVYAINPDGTEKWNFYAGY--  214 (330)
T ss_dssp             SCCEECTTSCEEEECTTSEEEEECTTSCEEEEEECSSCCCS-CCEECTTCCEEEES--SSEEEECTTSCEEEEECCSS--
T ss_pred             eeeEEcCCCEEEEEcCCCEEEEECCCCCEeEEEecCCCcee-eeEEcCCCEEEEEe--CEEEEECCCCcEEEEEccCC--
Confidence            345788889999999889999999886543 2222233445 78888899999998  78888886662222111111  


Q ss_pred             ccccccEEEcCCCCEEEEeCC
Q 026389          159 INLADDLIAATDGSIYFSVAS  179 (239)
Q Consensus       159 ~~~pn~l~vd~dG~iy~td~~  179 (239)
                       .....+.++++|+||++...
T Consensus       215 -~~~~~~~~~~~g~l~v~t~~  234 (330)
T 3hxj_A          215 -WTVTRPAISEDGTIYVTSLD  234 (330)
T ss_dssp             -CCCSCCEECTTSCEEEEETT
T ss_pred             -cceeceEECCCCeEEEEcCC
Confidence             34678889999999998653

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=98.87  E-value=6.8e-08  Score=89.05  Aligned_cols=142  Identities=13%  Similarity=0.138  Sum_probs=97.1

Q ss_pred             CcceEEEcCCC-CEEEEeCCCeEEEEec---CCcEEEeeeccCcCccCeEEcC----CCC-EEEEeCCCCeEEE-c-cCC
Q 026389           78 GPEDVCVDRNG-VLYTATRDGWIKRLHK---NGTWENWKLIGGDTLLGITTTQ----ENE-ILVCDADKGLLKV-T-EEG  146 (239)
Q Consensus        78 gPe~ia~d~~G-~ly~~~~~g~I~~~~~---~G~~~~~~~~~~~p~~Gl~~d~----~G~-L~v~d~~~g~~~v-~-~~g  146 (239)
                      .|.+++++++| .||+++.+++|..||.   +++.......+..|. ++++++    +|+ ||+++...+.+.+ | .++
T Consensus       180 ~~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~g~~p~-~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~  258 (543)
T 1nir_A          180 AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEAR-SVESSKFKGYEDRYTIAGAYWPPQFAIMDGETL  258 (543)
T ss_dssp             TEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEE-EEEECCSTTCTTTEEEEEEEESSEEEEEETTTC
T ss_pred             ccceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEecCCCcc-eEEeCCCcCCCCCEEEEEEccCCeEEEEecccc
Confidence            38899999988 5788888899999997   344433334567899 999999    995 8888765555555 4 344


Q ss_pred             --ceEEecc---cCC---ccccccccEEEcCCC-CEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeE-E-EecC
Q 026389          147 --VTVLASH---VNG---SRINLADDLIAATDG-SIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNET-S-ILLD  215 (239)
Q Consensus       147 --~~~l~~~---~~g---~~~~~pn~l~vd~dG-~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~-~-~~~~  215 (239)
                        ...+...   .++   .+-..+..++++++| .+|++...                 .|+|..+|..+.+. . ..+.
T Consensus       259 ~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~-----------------~g~i~vvd~~~~~~l~~~~i~  321 (543)
T 1nir_A          259 EPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKE-----------------TGKVLLVNYKDIDNLTVTSIG  321 (543)
T ss_dssp             CEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETT-----------------TTEEEEEECTTSSSCEEEEEE
T ss_pred             ccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECC-----------------CCeEEEEEecCCCcceeEEec
Confidence              3333211   111   112256789999987 56666643                 58999999875432 1 1223


Q ss_pred             CCCCcceEEEcCCCCEEEEEeC
Q 026389          216 SLFFANGVALSKDEDYLVVCET  237 (239)
Q Consensus       216 ~l~~pnGia~s~dg~~lyvadt  237 (239)
                      .-.+|.+++|+|||+++|++..
T Consensus       322 ~~~~~~~~~~spdg~~l~va~~  343 (543)
T 1nir_A          322 AAPFLHDGGWDSSHRYFMTAAN  343 (543)
T ss_dssp             CCSSCCCEEECTTSCEEEEEEG
T ss_pred             cCcCccCceECCCCCEEEEEec
Confidence            3567999999999999998864

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=98.87  E-value=1.4e-07  Score=79.67  Aligned_cols=132  Identities=12%  Similarity=0.192  Sum_probs=91.2

Q ss_pred             cceEEEcCCCCEEEEeCCCeEEEEecCCcEEE-eeeccCcCccCeEEcCCCCEEEEeCCCCeEEEccCC-ceEEecccCC
Q 026389           79 PEDVCVDRNGVLYTATRDGWIKRLHKNGTWEN-WKLIGGDTLLGITTTQENEILVCDADKGLLKVTEEG-VTVLASHVNG  156 (239)
Q Consensus        79 Pe~ia~d~~G~ly~~~~~g~I~~~~~~G~~~~-~~~~~~~p~~Gl~~d~~G~L~v~d~~~g~~~v~~~g-~~~l~~~~~g  156 (239)
                      ...+++|++|.||+++  +.|++++.+|+... ......... .++++.+|+||++....+++.++++| ...-... .+
T Consensus       179 ~~~~~~d~~g~l~v~t--~~l~~~d~~g~~~~~~~~~~~~~~-~~~~~~~g~l~v~t~~~gl~~~~~~g~~~~~~~~-~~  254 (330)
T 3hxj_A          179 TSAASIGKDGTIYFGS--DKVYAINPDGTEKWNFYAGYWTVT-RPAISEDGTIYVTSLDGHLYAINPDGTEKWRFKT-GK  254 (330)
T ss_dssp             CSCCEECTTCCEEEES--SSEEEECTTSCEEEEECCSSCCCS-CCEECTTSCEEEEETTTEEEEECTTSCEEEEEEC-SS
T ss_pred             eeeeEEcCCCEEEEEe--CEEEEECCCCcEEEEEccCCccee-ceEECCCCeEEEEcCCCeEEEECCCCCEeEEeeC-CC
Confidence            3456888899999998  89999997776432 122234466 88999999999999888999998766 2221111 11


Q ss_pred             ccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecCCCCCcceEEEcCCCCEEEEEe
Q 026389          157 SRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCE  236 (239)
Q Consensus       157 ~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~~l~~pnGia~s~dg~~lyvad  236 (239)
                         .....+.++++|+||++...                  |.|+++|+++.........-...+.++.+++|+ ||+..
T Consensus       255 ---~~~~~~~~~~~g~l~v~t~~------------------ggl~~~d~~g~~~~~~~~~~~~~~~~~~d~~g~-l~~gt  312 (330)
T 3hxj_A          255 ---RIESSPVIGNTDTIYFGSYD------------------GHLYAINPDGTEKWNFETGSWIIATPVIDENGT-IYFGT  312 (330)
T ss_dssp             ---CCCSCCEECTTSCEEEECTT------------------CEEEEECTTSCEEEEEECSSCCCSCCEECTTCC-EEEEC
T ss_pred             ---CccccceEcCCCeEEEecCC------------------CCEEEECCCCcEEEEEEcCCccccceEEcCCCE-EEEEc
Confidence               23456888999999998753                  689999986443433333334566788888887 66653

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=98.86  E-value=1.9e-07  Score=78.66  Aligned_cols=134  Identities=11%  Similarity=0.096  Sum_probs=95.1

Q ss_pred             ceEEEcCCCCEEEEe-C-CCeEEEEecCCcEE-Eeeec------cCcCccCeEEcCCCCEEEEeCCCCeE-EEccCC-ce
Q 026389           80 EDVCVDRNGVLYTAT-R-DGWIKRLHKNGTWE-NWKLI------GGDTLLGITTTQENEILVCDADKGLL-KVTEEG-VT  148 (239)
Q Consensus        80 e~ia~d~~G~ly~~~-~-~g~I~~~~~~G~~~-~~~~~------~~~p~~Gl~~d~~G~L~v~d~~~g~~-~v~~~g-~~  148 (239)
                      .++.+.++|+++++. . +++|+.++++|+.. .+...      ...+. +++++++|++++++...+.+ .++.+| ..
T Consensus        80 ~~~~~~~dG~~lv~~~~~~~~v~~vd~~Gk~l~~~~~~~~~~~~~~~~~-~v~~~~~G~~lv~~~~~~~v~~~d~~G~~~  158 (276)
T 3no2_A           80 QTARILPDGNALVAWCGHPSTILEVNMKGEVLSKTEFETGIERPHAQFR-QINKNKKGNYLVPLFATSEVREIAPNGQLL  158 (276)
T ss_dssp             EEEEECTTSCEEEEEESTTEEEEEECTTSCEEEEEEECCSCSSGGGSCS-CCEECTTSCEEEEETTTTEEEEECTTSCEE
T ss_pred             cccEECCCCCEEEEecCCCCEEEEEeCCCCEEEEEeccCCCCccccccc-CceECCCCCEEEEecCCCEEEEECCCCCEE
Confidence            456788899998776 4 78999999999742 22211      12467 88899999999998776655 456668 32


Q ss_pred             EEecccCCccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEE-Eec----C--CCCCcc
Q 026389          149 VLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETS-ILL----D--SLFFAN  221 (239)
Q Consensus       149 ~l~~~~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~-~~~----~--~l~~pn  221 (239)
                      .-... .    ..|.++.+.++|++++++..                 +++|+.+|+++|++. .+.    .  .+.+|.
T Consensus       159 w~~~~-~----~~~~~~~~~~~g~~~v~~~~-----------------~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~  216 (276)
T 3no2_A          159 NSVKL-S----GTPFSSAFLDNGDCLVACGD-----------------AHCFVQLNLESNRIVRRVNANDIEGVQLFFVA  216 (276)
T ss_dssp             EEEEC-S----SCCCEEEECTTSCEEEECBT-----------------TSEEEEECTTTCCEEEEEEGGGSBSCCCSEEE
T ss_pred             EEEEC-C----CCccceeEcCCCCEEEEeCC-----------------CCeEEEEeCcCCcEEEEecCCCCCCccccccc
Confidence            22211 1    24678899999999999865                 478999999966653 222    1  256699


Q ss_pred             eEEEcCCCCEEEEEeC
Q 026389          222 GVALSKDEDYLVVCET  237 (239)
Q Consensus       222 Gia~s~dg~~lyvadt  237 (239)
                      |+++.++|+ +||+++
T Consensus       217 ~~~~~~~G~-i~v~~~  231 (276)
T 3no2_A          217 QLFPLQNGG-LYICNW  231 (276)
T ss_dssp             EEEECTTSC-EEEEEE
T ss_pred             cceEcCCCC-EEEEec
Confidence            999999998 677774

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=98.86  E-value=1.1e-07  Score=83.40  Aligned_cols=139  Identities=15%  Similarity=0.115  Sum_probs=98.9

Q ss_pred             cCCcceEEEcCCCC-EEEEe-CCCeEEEEec-CCcEEEeeeccCcCccCeEEcCCCC-EEEEeC-------CCCeEEE-c
Q 026389           76 LNGPEDVCVDRNGV-LYTAT-RDGWIKRLHK-NGTWENWKLIGGDTLLGITTTQENE-ILVCDA-------DKGLLKV-T  143 (239)
Q Consensus        76 ~~gPe~ia~d~~G~-ly~~~-~~g~I~~~~~-~G~~~~~~~~~~~p~~Gl~~d~~G~-L~v~d~-------~~g~~~v-~  143 (239)
                      ...+.+++++++|. +|++. .++.|..||. +++..........+. +++++++|+ |+++..       ..+.+++ +
T Consensus       211 ~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~-~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d  289 (433)
T 3bws_A          211 GKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKIGLPR-GLLLSKDGKELYIAQFSASNQESGGGRLGIYS  289 (433)
T ss_dssp             SSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCCSEEE-EEEECTTSSEEEEEEEESCTTCSCCEEEEEEE
T ss_pred             CCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCCCCce-EEEEcCCCCEEEEEECCCCccccCCCeEEEEE
Confidence            35688999999875 65666 7899999996 455433334455688 999999995 666663       2344444 4


Q ss_pred             -cCC-ceEEecccCCccccccccEEEcCCC-CEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecCCCCCc
Q 026389          144 -EEG-VTVLASHVNGSRINLADDLIAATDG-SIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFA  220 (239)
Q Consensus       144 -~~g-~~~l~~~~~g~~~~~pn~l~vd~dG-~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~~l~~p  220 (239)
                       .++ .......     ...+..++++++| .+|++...                 .++|..||.++++..........+
T Consensus       290 ~~~~~~~~~~~~-----~~~~~~~~~~~~g~~l~~~~~~-----------------~~~v~v~d~~~~~~~~~~~~~~~~  347 (433)
T 3bws_A          290 MDKEKLIDTIGP-----PGNKRHIVSGNTENKIYVSDMC-----------------CSKIEVYDLKEKKVQKSIPVFDKP  347 (433)
T ss_dssp             TTTTEEEEEEEE-----EECEEEEEECSSTTEEEEEETT-----------------TTEEEEEETTTTEEEEEEECSSSE
T ss_pred             CCCCcEEeeccC-----CCCcceEEECCCCCEEEEEecC-----------------CCEEEEEECCCCcEEEEecCCCCC
Confidence             345 2222111     1247789999999 58888765                 589999999888776666566778


Q ss_pred             ceEEEcCCCCEEEEEeC
Q 026389          221 NGVALSKDEDYLVVCET  237 (239)
Q Consensus       221 nGia~s~dg~~lyvadt  237 (239)
                      ++++++|||++||++..
T Consensus       348 ~~~~~s~dg~~l~~~~~  364 (433)
T 3bws_A          348 NTIALSPDGKYLYVSCR  364 (433)
T ss_dssp             EEEEECTTSSEEEEEEC
T ss_pred             CeEEEcCCCCEEEEEec
Confidence            99999999999998865

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=98.78  E-value=1.1e-07  Score=80.56  Aligned_cols=148  Identities=12%  Similarity=0.035  Sum_probs=90.5

Q ss_pred             ceEEEcCCCCEEEEe-CCCeEEEEecC-CcEEEeeeccC--cCccCeEEcCCCC-EEEEeCCCCeEE-Ec-cCC-ce-EE
Q 026389           80 EDVCVDRNGVLYTAT-RDGWIKRLHKN-GTWENWKLIGG--DTLLGITTTQENE-ILVCDADKGLLK-VT-EEG-VT-VL  150 (239)
Q Consensus        80 e~ia~d~~G~ly~~~-~~g~I~~~~~~-G~~~~~~~~~~--~p~~Gl~~d~~G~-L~v~d~~~g~~~-v~-~~g-~~-~l  150 (239)
                      .|+++.+++.+|++. .+++|+.||.+ ++.........  .|. +++++++|+ +|++....+.+. ++ .++ .. .+
T Consensus         3 ~g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~-~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~   81 (349)
T 1jmx_B            3 TGPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPG-TAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHA   81 (349)
T ss_dssp             -CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSC-EEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             ccccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCc-eeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEE
Confidence            355777888888665 88999999964 55433233334  688 999999996 888887666555 45 355 22 22


Q ss_pred             e-cccCCccccccccEEEcCCC-CEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEE---EecCCCCCcceEEE
Q 026389          151 A-SHVNGSRINLADDLIAATDG-SIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETS---ILLDSLFFANGVAL  225 (239)
Q Consensus       151 ~-~~~~g~~~~~pn~l~vd~dG-~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~---~~~~~l~~pnGia~  225 (239)
                      . ....+.....++++++++|| .+|++..........+      ....+.|+.||..+++..   .....-..+.++++
T Consensus        82 ~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~------~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~  155 (349)
T 1jmx_B           82 NLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHY------VVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRA  155 (349)
T ss_dssp             ESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCE------EECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEE
T ss_pred             EcccccccccccccceEECCCCCEEEEEccccccccccc------ccCCCeEEEEECCCccccceeeeccCCCcccceeE
Confidence            1 11111113458999999999 5777663200000000      112368999998764321   12222345788999


Q ss_pred             cCCCCEEEEE
Q 026389          226 SKDEDYLVVC  235 (239)
Q Consensus       226 s~dg~~lyva  235 (239)
                      +|||+ +|++
T Consensus       156 s~dg~-l~~~  164 (349)
T 1jmx_B          156 ADDGS-LYVA  164 (349)
T ss_dssp             CTTSC-EEEE
T ss_pred             CCCCc-EEEc
Confidence            99999 8875

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=98.77  E-value=8.8e-07  Score=77.82  Aligned_cols=71  Identities=14%  Similarity=0.077  Sum_probs=47.5

Q ss_pred             eEeccCCcCCcceEEEcCCC-CEEEEe----------CCCeEEEEecC-CcEEEeeec--------cCcCccCeEEcCCC
Q 026389           69 TRLGEGILNGPEDVCVDRNG-VLYTAT----------RDGWIKRLHKN-GTWENWKLI--------GGDTLLGITTTQEN  128 (239)
Q Consensus        69 ~~l~~g~~~gPe~ia~d~~G-~ly~~~----------~~g~I~~~~~~-G~~~~~~~~--------~~~p~~Gl~~d~~G  128 (239)
                      ..+..|  ..| ++++++|| .+|++.          .++.|..||.. ++.......        +..|. ++++++||
T Consensus        61 ~~i~~g--~~p-~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~-~~~~spDG  136 (373)
T 2mad_H           61 GHVNGG--FLP-NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSW-MNANTPNN  136 (373)
T ss_pred             EEecCC--CCC-CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCcc-ceEECCCC
Confidence            445555  468 99999988 588876          25678899873 443222222        24688 99999999


Q ss_pred             -CEEEEeCC--CCeEEEc
Q 026389          129 -EILVCDAD--KGLLKVT  143 (239)
Q Consensus       129 -~L~v~d~~--~g~~~v~  143 (239)
                       .|||++..  ..+..+|
T Consensus       137 ~~l~v~n~~~~~~v~viD  154 (373)
T 2mad_H          137 ADLLFFQFAAGPAVGLVV  154 (373)
T ss_pred             CEEEEEecCCCCeEEEEE
Confidence             58998753  3345555

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=98.74  E-value=4.6e-07  Score=78.94  Aligned_cols=69  Identities=17%  Similarity=0.109  Sum_probs=46.3

Q ss_pred             eEeccCCcCCcceEEEcCCC-CEEEEeC----------CCeEEEEecC-CcEE-Eeee------ccCcCccCeEEcCCC-
Q 026389           69 TRLGEGILNGPEDVCVDRNG-VLYTATR----------DGWIKRLHKN-GTWE-NWKL------IGGDTLLGITTTQEN-  128 (239)
Q Consensus        69 ~~l~~g~~~gPe~ia~d~~G-~ly~~~~----------~g~I~~~~~~-G~~~-~~~~------~~~~p~~Gl~~d~~G-  128 (239)
                      ..+..+  ..| ++++++|| .+|+++.          ++.|..||.. ++.. .+.-      .+..|. ++++++|| 
T Consensus        45 ~~i~~g--~~p-~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~-~i~~spdg~  120 (361)
T 2oiz_A           45 GMVPTA--FNG-HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDG-LFRQTTDGK  120 (361)
T ss_dssp             EEEECC--EEE-EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGG-GEEECTTSS
T ss_pred             EEecCC--CCC-ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcc-eEEECCCCC
Confidence            345555  468 99999988 5888762          4579999863 4432 2221      235799 99999999 


Q ss_pred             CEEEEeCC-CCeEE
Q 026389          129 EILVCDAD-KGLLK  141 (239)
Q Consensus       129 ~L~v~d~~-~g~~~  141 (239)
                      .|||++.. .+.+.
T Consensus       121 ~l~v~n~~~~~~v~  134 (361)
T 2oiz_A          121 FIVLQNASPATSIG  134 (361)
T ss_dssp             EEEEEEESSSEEEE
T ss_pred             EEEEECCCCCCeEE
Confidence            58998754 34343

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=98.72  E-value=7e-07  Score=80.07  Aligned_cols=163  Identities=15%  Similarity=0.103  Sum_probs=96.5

Q ss_pred             ceEeccCCcCCcceEEEcCCC-CEEEEe----------CCCeEEEEec-CCcEEEeeec--------cCcCccCeEEcCC
Q 026389           68 VTRLGEGILNGPEDVCVDRNG-VLYTAT----------RDGWIKRLHK-NGTWENWKLI--------GGDTLLGITTTQE  127 (239)
Q Consensus        68 ~~~l~~g~~~gPe~ia~d~~G-~ly~~~----------~~g~I~~~~~-~G~~~~~~~~--------~~~p~~Gl~~d~~  127 (239)
                      ...|..|  ..| ++++++|| .+|+++          .++.|..||. +++.......        +..|. ++++++|
T Consensus       112 v~~I~vG--~~P-gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~-~~~~spD  187 (426)
T 3c75_H          112 LGMTDGG--FLP-HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQW-MNALTPD  187 (426)
T ss_dssp             EEEEEEC--SSC-EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGG-GSEECTT
T ss_pred             EEEEECC--CCC-ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcc-eEEEcCC
Confidence            3445556  468 99999987 599886          3568999996 4554322222        35799 9999999


Q ss_pred             C-CEEEEeCC-CC-eEEEc-cCC--ceEEecccCCcccccccc----EEEcCCCCEEEEeCCCC---------cCcccc-
Q 026389          128 N-EILVCDAD-KG-LLKVT-EEG--VTVLASHVNGSRINLADD----LIAATDGSIYFSVASTK---------FGLHNW-  187 (239)
Q Consensus       128 G-~L~v~d~~-~g-~~~v~-~~g--~~~l~~~~~g~~~~~pn~----l~vd~dG~iy~td~~~~---------~~~~~~-  187 (239)
                      | +|||++.. .+ +..+| .++  +..+.  ..+....+|.+    +++.+||++++-+....         +..... 
T Consensus       188 Gk~lyV~n~~~~~~VsVID~~t~kvv~~I~--v~g~~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p  265 (426)
T 3c75_H          188 NKNLLFYQFSPAPAVGVVDLEGKTFDRMLD--VPDCYHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDEL  265 (426)
T ss_dssp             SSEEEEEECSSSCEEEEEETTTTEEEEEEE--CCSEEEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSC
T ss_pred             CCEEEEEecCCCCeEEEEECCCCeEEEEEE--cCCceeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCc
Confidence            9 59999864 44 55566 444  22221  12212334555    78888996554443211         111000 


Q ss_pred             -------c---ccceeecCCceEEEEeCCCCeEEEecC----------CCCCcce---EEEcCCCCEEEEEe
Q 026389          188 -------G---LDLLEAKPHGKLLKYDPSLNETSILLD----------SLFFANG---VALSKDEDYLVVCE  236 (239)
Q Consensus       188 -------~---~~~~e~~~~g~v~~~d~~~~~~~~~~~----------~l~~pnG---ia~s~dg~~lyvad  236 (239)
                             .   ..++.....|+|+.+|..++++.++..          ....|.|   +++++||+++||++
T Consensus       266 ~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~  337 (426)
T 3c75_H          266 LINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLV  337 (426)
T ss_dssp             BCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEE
T ss_pred             eeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEe
Confidence                   0   011111234678888876555443321          0123555   99999999999986

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=98.70  E-value=1.1e-07  Score=85.97  Aligned_cols=123  Identities=13%  Similarity=0.063  Sum_probs=78.1

Q ss_pred             cEEEeeeccCcCccCeEEcCCCCEEEEeCCCC-eEEEcc-CC-ceEEecccCC----ccccccccEEEcC----CCCEEE
Q 026389          107 TWENWKLIGGDTLLGITTTQENEILVCDADKG-LLKVTE-EG-VTVLASHVNG----SRINLADDLIAAT----DGSIYF  175 (239)
Q Consensus       107 ~~~~~~~~~~~p~~Gl~~d~~G~L~v~d~~~g-~~~v~~-~g-~~~l~~~~~g----~~~~~pn~l~vd~----dG~iy~  175 (239)
                      +++.++.....|. +|+++++|+|||++...+ +++++. +| .+.+....+.    .....+.||+++|    +|.||+
T Consensus        18 ~~~~~a~~l~~P~-~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv   96 (454)
T 1cru_A           18 DKKVILSNLNKPH-ALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYI   96 (454)
T ss_dssp             CEEEEECCCSSEE-EEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEE
T ss_pred             EEEEEECCCCCce-EEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEE
Confidence            4556666678999 999999999999998765 777774 57 5544322111    1234567999999    689999


Q ss_pred             EeCCCCcCcccccccceeecCCceEEEEeCCC--C---eEEEecC-----CCCCcceEEEcCCCCEEEEEe
Q 026389          176 SVASTKFGLHNWGLDLLEAKPHGKLLKYDPSL--N---ETSILLD-----SLFFANGVALSKDEDYLVVCE  236 (239)
Q Consensus       176 td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~--~---~~~~~~~-----~l~~pnGia~s~dg~~lyvad  236 (239)
                      +.+...-....     -......+|+|++.+.  +   +.+++++     ..+++++|+|++||+ |||+.
T Consensus        97 ~~s~~~~~~~~-----~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~-Lyv~~  161 (454)
T 1cru_A           97 SGTFKNPKSTD-----KELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQK-IYYTI  161 (454)
T ss_dssp             EEEEECTTC-------CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSC-EEEEE
T ss_pred             EEeccccCCCc-----cccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCe-EEEEE
Confidence            98531000000     0000135888887542  1   2233432     346789999999996 89984

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=98.68  E-value=1e-06  Score=81.79  Aligned_cols=148  Identities=16%  Similarity=0.126  Sum_probs=97.7

Q ss_pred             EeccCCcCCcceEEEcCCCC-EEEEeCCCeEEEEec---CCcEEEeeeccCcCccCeEEc----CCC-CEEEEeCCCCeE
Q 026389           70 RLGEGILNGPEDVCVDRNGV-LYTATRDGWIKRLHK---NGTWENWKLIGGDTLLGITTT----QEN-EILVCDADKGLL  140 (239)
Q Consensus        70 ~l~~g~~~gPe~ia~d~~G~-ly~~~~~g~I~~~~~---~G~~~~~~~~~~~p~~Gl~~d----~~G-~L~v~d~~~g~~  140 (239)
                      .+..|  ..|+++++++||+ +|+++.++.|..||.   +++...-...+..|. +++++    +|| .+||++...+.+
T Consensus       192 ~i~~g--~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~~P~-~ia~s~~~~pDGk~l~v~n~~~~~v  268 (567)
T 1qks_A          192 VLDTG--YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEAR-SIETSKMEGWEDKYAIAGAYWPPQY  268 (567)
T ss_dssp             EEECS--SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEE-EEEECCSTTCTTTEEEEEEEETTEE
T ss_pred             EEeCC--CCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCCCCc-eeEEccccCCCCCEEEEEEccCCeE
Confidence            34444  4789999999985 789889999999997   455443345577899 99999    588 589998776666


Q ss_pred             EE-c-cCC--ceEEec-c--cCCc---cccccccEEEcCCCC-EEEEeCCCCcCcccccccceeecCCceEEEEeCCCCe
Q 026389          141 KV-T-EEG--VTVLAS-H--VNGS---RINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNE  209 (239)
Q Consensus       141 ~v-~-~~g--~~~l~~-~--~~g~---~~~~pn~l~vd~dG~-iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~  209 (239)
                      .+ | .+.  +..+.. .  .++.   +...+..+...+++. +|++..                 ..|+|+.+|..+.+
T Consensus       269 ~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~-----------------~~g~v~~vd~~~~~  331 (567)
T 1qks_A          269 VIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVK-----------------ETGKILLVDYTDLN  331 (567)
T ss_dssp             EEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEET-----------------TTTEEEEEETTCSS
T ss_pred             EEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEec-----------------CCCeEEEEecCCCc
Confidence            55 4 233  222221 1  1111   112345677777764 444432                 26899999976542


Q ss_pred             EEE--ecCCCCCcceEEEcCCCCEEEEEeC
Q 026389          210 TSI--LLDSLFFANGVALSKDEDYLVVCET  237 (239)
Q Consensus       210 ~~~--~~~~l~~pnGia~s~dg~~lyvadt  237 (239)
                      ...  -+..-.++.++.|++||+++|++..
T Consensus       332 ~~~v~~i~~~~~~~d~~~~pdgr~~~va~~  361 (567)
T 1qks_A          332 NLKTTEISAERFLHDGGLDGSHRYFITAAN  361 (567)
T ss_dssp             EEEEEEEECCSSEEEEEECTTSCEEEEEEG
T ss_pred             cceeeeeeccccccCceECCCCCEEEEEeC
Confidence            111  1233467899999999999999864

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=98.68  E-value=5.3e-07  Score=79.37  Aligned_cols=71  Identities=7%  Similarity=-0.125  Sum_probs=50.2

Q ss_pred             ceEeccCCcCCcceEEEcCCC-CEEEEe----------CCCeEEEEec-CCcEEEeeecc--------CcCccCeEEcCC
Q 026389           68 VTRLGEGILNGPEDVCVDRNG-VLYTAT----------RDGWIKRLHK-NGTWENWKLIG--------GDTLLGITTTQE  127 (239)
Q Consensus        68 ~~~l~~g~~~gPe~ia~d~~G-~ly~~~----------~~g~I~~~~~-~G~~~~~~~~~--------~~p~~Gl~~d~~  127 (239)
                      ..++..|  ..| ++++++|| .+|+++          .++.|..||. +++.......+        ..|. ++++++|
T Consensus        59 ~~~i~vG--~~P-~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~-~ia~SpD  134 (368)
T 1mda_H           59 LGHSLGA--FLS-LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVH-IIGNCAS  134 (368)
T ss_dssp             EEEEEEC--TTC-EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTT-SEEECTT
T ss_pred             EEEEeCC--CCC-ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCcc-eEEEcCC
Confidence            3555666  468 99999987 799886          3578999996 45543322222        4799 9999999


Q ss_pred             C-CEEEEeCC-CCeEEE
Q 026389          128 N-EILVCDAD-KGLLKV  142 (239)
Q Consensus       128 G-~L~v~d~~-~g~~~v  142 (239)
                      | +|||++.. ...+.+
T Consensus       135 Gk~lyVan~~~~~~v~V  151 (368)
T 1mda_H          135 SACLLFFLFGSSAAAGL  151 (368)
T ss_dssp             SSCEEEEECSSSCEEEE
T ss_pred             CCEEEEEccCCCCeEEE
Confidence            9 69999864 344444

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=98.65  E-value=1.1e-06  Score=79.84  Aligned_cols=135  Identities=16%  Similarity=0.186  Sum_probs=95.7

Q ss_pred             CcceEEEcCCCCEE-EEeCCCeEEEEecCCcE-EEeeeccCcCccCeEEcCCCCEEEEeCCCCeEEEc-cCC--ceEEec
Q 026389           78 GPEDVCVDRNGVLY-TATRDGWIKRLHKNGTW-ENWKLIGGDTLLGITTTQENEILVCDADKGLLKVT-EEG--VTVLAS  152 (239)
Q Consensus        78 gPe~ia~d~~G~ly-~~~~~g~I~~~~~~G~~-~~~~~~~~~p~~Gl~~d~~G~L~v~d~~~g~~~v~-~~g--~~~l~~  152 (239)
                      .-.++++.+++..+ +++.++.|..|+.+++. ..+........ .+++.++|+++++-...+.+++. .+|  ...+..
T Consensus       428 ~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~v~-~~~~spd~~~las~~~d~~i~iw~~~~~~~~~~~~  506 (577)
T 2ymu_A          428 SVWGVAFSPDDQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVR-GVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTG  506 (577)
T ss_dssp             CEEEEEECTTSSEEEEEETTSEEEEEETTSCEEEEEECCSSCEE-EEEECTTSCEEEEEETTSEEEEEETTSCEEEEEEC
T ss_pred             CeEEEEECCCCCEEEEEcCCCEEEEEECCCCEEEEEcCCCCCEE-EEEEcCCCCEEEEEeCCCEEEEEcCCCCEEEEEeC
Confidence            34578999988665 66689999999987764 33333344556 89999999988877667778776 566  343322


Q ss_pred             ccCCccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecCCCCCcceEEEcCCCCEE
Q 026389          153 HVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYL  232 (239)
Q Consensus       153 ~~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~~l~~pnGia~s~dg~~l  232 (239)
                      ..     ...+.+++.|||++.++-+.                 .|.|..||.++..+..+...-...++++|+|||++|
T Consensus       507 h~-----~~v~~l~~s~dg~~l~s~~~-----------------dg~v~lwd~~~~~~~~~~~h~~~v~~~~fs~dg~~l  564 (577)
T 2ymu_A          507 HS-----SSVRGVAFSPDGQTIASASD-----------------DKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTI  564 (577)
T ss_dssp             CS-----SCEEEEEECTTSSCEEEEET-----------------TSEEEEECTTSCEEEEEECCSSCEEEEEECTTSSCE
T ss_pred             CC-----CCEEEEEEcCCCCEEEEEEC-----------------cCEEEEEeCCCCEEEEEcCCCCCEEEEEEcCCCCEE
Confidence            11     23678999999987666543                 478999998655555555444566899999999987


Q ss_pred             EEE
Q 026389          233 VVC  235 (239)
Q Consensus       233 yva  235 (239)
                      +.+
T Consensus       565 ~s~  567 (577)
T 2ymu_A          565 ASA  567 (577)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            654

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.61  E-value=6.2e-06  Score=68.89  Aligned_cols=146  Identities=17%  Similarity=0.192  Sum_probs=95.0

Q ss_pred             CCcCCcceEEEcCC-CCEEE-EeCCCeEEEEecCCcEEEeee--ccCcCccCeEEcCCCCEEEEeCCCCe-EEEc--cCC
Q 026389           74 GILNGPEDVCVDRN-GVLYT-ATRDGWIKRLHKNGTWENWKL--IGGDTLLGITTTQENEILVCDADKGL-LKVT--EEG  146 (239)
Q Consensus        74 g~~~gPe~ia~d~~-G~ly~-~~~~g~I~~~~~~G~~~~~~~--~~~~p~~Gl~~d~~G~L~v~d~~~g~-~~v~--~~g  146 (239)
                      |....+.|++++++ +.||+ .+.+++|+++|.+|++..-..  ....+- ||+++.+|+++|++...+. +.+.  .++
T Consensus        24 g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~g~v~~~i~l~g~~D~E-GIa~~~~g~~~vs~E~~~~l~~~~v~~~~  102 (255)
T 3qqz_A           24 GITNNISSLTWSAQSNTLFSTINKPAAIVEMTTNGDLIRTIPLDFVKDLE-TIEYIGDNQFVISDERDYAIYVISLTPNS  102 (255)
T ss_dssp             TCCSCEEEEEEETTTTEEEEEEETTEEEEEEETTCCEEEEEECSSCSSEE-EEEECSTTEEEEEETTTTEEEEEEECTTC
T ss_pred             CcccCcceeEEeCCCCEEEEEECCCCeEEEEeCCCCEEEEEecCCCCChH-HeEEeCCCEEEEEECCCCcEEEEEcCCCC
Confidence            33467999999985 67995 568999999999987643332  235788 9999999999898766544 4443  344


Q ss_pred             -ceEEecc-cC---CccccccccEEEcCCC-CEEEEeCCCCcCcccccccceeecCCceEEEEe--CCCCeEEEecC---
Q 026389          147 -VTVLASH-VN---GSRINLADDLIAATDG-SIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYD--PSLNETSILLD---  215 (239)
Q Consensus       147 -~~~l~~~-~~---g~~~~~pn~l~vd~dG-~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d--~~~~~~~~~~~---  215 (239)
                       ...+... ..   ...=....||++|+++ ++|++....                ..+||.|+  +.+..++++.+   
T Consensus       103 ~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~----------------p~~i~~~~g~~~~~~l~i~~~~~~  166 (255)
T 3qqz_A          103 EVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKN----------------PIEVYKVNGLLSSNELHISKDKAL  166 (255)
T ss_dssp             CEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESS----------------SEEEEEEESTTCSSCCEEEECHHH
T ss_pred             eeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcC----------------CceEEEEcccccCCceeeecchhh
Confidence             2322211 11   1111235899999987 899876441                24788887  22233443311   


Q ss_pred             ----CCCCcceEEEcCCCCEEEEEe
Q 026389          216 ----SLFFANGVALSKDEDYLVVCE  236 (239)
Q Consensus       216 ----~l~~pnGia~s~dg~~lyvad  236 (239)
                          .+..+.+++++|....||+..
T Consensus       167 ~~~~~~~d~S~l~~dp~tg~lliLS  191 (255)
T 3qqz_A          167 QRQFTLDDVSGAEFNQQKNTLLVLS  191 (255)
T ss_dssp             HHTCCSSCCCEEEEETTTTEEEEEE
T ss_pred             ccccccCCceeEEEcCCCCeEEEEE
Confidence                345689999999877777753

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=98.59  E-value=2.5e-06  Score=75.51  Aligned_cols=138  Identities=9%  Similarity=0.044  Sum_probs=90.8

Q ss_pred             CcceEEEcCCCC-EEEEeCC---CeEEEEec-CCcEEEeeeccCcCccCeEEcCCCC-EEEEeCCC---CeEEEc-cCC-
Q 026389           78 GPEDVCVDRNGV-LYTATRD---GWIKRLHK-NGTWENWKLIGGDTLLGITTTQENE-ILVCDADK---GLLKVT-EEG-  146 (239)
Q Consensus        78 gPe~ia~d~~G~-ly~~~~~---g~I~~~~~-~G~~~~~~~~~~~p~~Gl~~d~~G~-L~v~d~~~---g~~~v~-~~g-  146 (239)
                      ...+++|+|+|+ |++++.+   ..|+.++. +|+...+....+... .+++.+||+ |+++....   .++.++ ..+ 
T Consensus       180 ~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~l~~~~~~~~-~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~  258 (415)
T 2hqs_A          180 PLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNG-APAFSPDGSKLAFALSKTGSLNLYVMDLASGQ  258 (415)
T ss_dssp             CEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEECCSSCEE-EEEECTTSSEEEEEECTTSSCEEEEEETTTCC
T ss_pred             cceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEEEeecCCCccc-CEEEcCCCCEEEEEEecCCCceEEEEECCCCC
Confidence            455689999986 4455544   48999996 456555544445566 899999997 55344322   255556 455 


Q ss_pred             ceEEecccCCccccccccEEEcCCCC-EEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecCCCCCcceEEE
Q 026389          147 VTVLASHVNGSRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVAL  225 (239)
Q Consensus       147 ~~~l~~~~~g~~~~~pn~l~vd~dG~-iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~~l~~pnGia~  225 (239)
                      ...+... .    .....++++|||+ |+++....               +..+|+.+|.++++.+.+.........++|
T Consensus       259 ~~~l~~~-~----~~~~~~~~spdg~~l~~~s~~~---------------g~~~i~~~d~~~~~~~~l~~~~~~~~~~~~  318 (415)
T 2hqs_A          259 IRQVTDG-R----SNNTEPTWFPDSQNLAFTSDQA---------------GRPQVYKVNINGGAPQRITWEGSQNQDADV  318 (415)
T ss_dssp             EEECCCC-S----SCEEEEEECTTSSEEEEEECTT---------------SSCEEEEEETTSSCCEECCCSSSEEEEEEE
T ss_pred             EEeCcCC-C----CcccceEECCCCCEEEEEECCC---------------CCcEEEEEECCCCCEEEEecCCCcccCeEE
Confidence            4433221 1    2356789999996 66665320               134899999988877665544455678999


Q ss_pred             cCCCCEEEEEe
Q 026389          226 SKDEDYLVVCE  236 (239)
Q Consensus       226 s~dg~~lyvad  236 (239)
                      +|||++|+++.
T Consensus       319 spdG~~l~~~~  329 (415)
T 2hqs_A          319 SSDGKFMVMVS  329 (415)
T ss_dssp             CTTSSEEEEEE
T ss_pred             CCCCCEEEEEE
Confidence            99999888764

>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}

Probab=98.59  E-value=6.4e-07  Score=83.28  Aligned_cols=76  Identities=17%  Similarity=0.210  Sum_probs=55.2

Q ss_pred             CCccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecCC--CCCcceEEEcCCCCEE
Q 026389          155 NGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDS--LFFANGVALSKDEDYL  232 (239)
Q Consensus       155 ~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~~--l~~pnGia~s~dg~~l  232 (239)
                      ....|..|++|++|++|+||+..-...-....     +....+..++.+++.++++..++.+  -....|++|+||+++|
T Consensus       471 ~~~~f~~PDNL~fd~~G~LwI~eDg~~~~~~~-----~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tl  545 (592)
T 3zwu_A          471 PQNMFNSPDGLGFDKAGRLWILTDGDSSNAGD-----FAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTL  545 (592)
T ss_dssp             TTTCCCCEEEEEECTTCCEEEEECCCCCCSGG-----GTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEE
T ss_pred             CCCCccCCcceEECCCCCEEEEecCCCccccc-----ccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEE
Confidence            34468899999999999999875432111110     1122456889999999999888754  3456899999999999


Q ss_pred             EEE
Q 026389          233 VVC  235 (239)
Q Consensus       233 yva  235 (239)
                      ||+
T Consensus       546 fvn  548 (592)
T 3zwu_A          546 FVG  548 (592)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            986

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=98.58  E-value=1.4e-06  Score=78.27  Aligned_cols=139  Identities=13%  Similarity=0.083  Sum_probs=88.3

Q ss_pred             eEEEcCCCCEEEEeC--------------------CCeEEEEecC-CcEEEeeec---cCcCccCeEE--cCCCC-EEEE
Q 026389           81 DVCVDRNGVLYTATR--------------------DGWIKRLHKN-GTWENWKLI---GGDTLLGITT--TQENE-ILVC  133 (239)
Q Consensus        81 ~ia~d~~G~ly~~~~--------------------~g~I~~~~~~-G~~~~~~~~---~~~p~~Gl~~--d~~G~-L~v~  133 (239)
                      ++.+.+++++++++.                    .++|..|+.+ ++.......   +..|. +++|  +++|+ +||+
T Consensus       192 d~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~~P~-~i~f~~~Pdg~~aYV~  270 (462)
T 2ece_A          192 DFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENRMAL-ELRPLHDPTKLMGFIN  270 (462)
T ss_dssp             CEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEEEEE-EEEECSSTTCCEEEEE
T ss_pred             eEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCCCccc-eeEeeECCCCCEEEEE
Confidence            477788887665552                    6899999964 443222222   25688 8887  89984 8888


Q ss_pred             eC-----CCCeEEE-c-cCC-c--eEEec----ccCCc----c------ccccccEEEcCCC-CEEEEeCCCCcCccccc
Q 026389          134 DA-----DKGLLKV-T-EEG-V--TVLAS----HVNGS----R------INLADDLIAATDG-SIYFSVASTKFGLHNWG  188 (239)
Q Consensus       134 d~-----~~g~~~v-~-~~g-~--~~l~~----~~~g~----~------~~~pn~l~vd~dG-~iy~td~~~~~~~~~~~  188 (239)
                      ..     ..+.+.+ . .+| .  ..+.+    .+.+.    +      -..|.+|.+++|| .||+++..         
T Consensus       271 ~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg---------  341 (462)
T 2ece_A          271 MVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWG---------  341 (462)
T ss_dssp             EEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETT---------
T ss_pred             EeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCC---------
Confidence            76     5544433 3 335 2  11111    01110    0      2468999999999 69999865         


Q ss_pred             ccceeecCCceEEEEeCC-CC--eE-EEecCC-C-------------CCcceEEEcCCCCEEEEEeC
Q 026389          189 LDLLEAKPHGKLLKYDPS-LN--ET-SILLDS-L-------------FFANGVALSKDEDYLVVCET  237 (239)
Q Consensus       189 ~~~~e~~~~g~v~~~d~~-~~--~~-~~~~~~-l-------------~~pnGia~s~dg~~lyvadt  237 (239)
                              .+.|..||.. .+  ++ ..+..+ .             ..|.++++|+||++|||+++
T Consensus       342 --------~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaNs  400 (462)
T 2ece_A          342 --------IGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTNS  400 (462)
T ss_dssp             --------TTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEECC
T ss_pred             --------CCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEcC
Confidence                    5788888853 22  22 222222 1             26999999999999999984

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=98.56  E-value=7.4e-06  Score=68.43  Aligned_cols=137  Identities=14%  Similarity=0.124  Sum_probs=94.5

Q ss_pred             CCcceEEEcCCCCEE-EEeCCCeEEEEecC-CcEEEeeeccCcCccCeEEcCCCCEEEEeCCCCeEEEc--cCC-ceEEe
Q 026389           77 NGPEDVCVDRNGVLY-TATRDGWIKRLHKN-GTWENWKLIGGDTLLGITTTQENEILVCDADKGLLKVT--EEG-VTVLA  151 (239)
Q Consensus        77 ~gPe~ia~d~~G~ly-~~~~~g~I~~~~~~-G~~~~~~~~~~~p~~Gl~~d~~G~L~v~d~~~g~~~v~--~~g-~~~l~  151 (239)
                      ....+++++++|..+ +++.+|.|..|+.. ++............ .+++.++|+++++....+.+++.  .++ ...+.
T Consensus       184 ~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~v~-~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~~~~  262 (337)
T 1gxr_A          184 DGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIF-SLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLH  262 (337)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEE-EEEECTTSSEEEEEETTSCEEEEETTSSCEEEEC
T ss_pred             CceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeeecCCCceE-EEEECCCCCEEEEEcCCCcEEEEECCCCCeEEEc
Confidence            456789999988654 66799999999964 44333233445566 89999999866665555655554  344 32222


Q ss_pred             cccCCccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecCCCCCcceEEEcCCCCE
Q 026389          152 SHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDY  231 (239)
Q Consensus       152 ~~~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~~l~~pnGia~s~dg~~  231 (239)
                      ..     ......++++++|+++++...                 .|.|..||..+++.......-...+.+++++|+++
T Consensus       263 ~~-----~~~v~~~~~~~~~~~l~~~~~-----------------dg~i~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~  320 (337)
T 1gxr_A          263 LH-----ESCVLSLKFAYCGKWFVSTGK-----------------DNLLNAWRTPYGASIFQSKESSSVLSCDISVDDKY  320 (337)
T ss_dssp             CC-----SSCEEEEEECTTSSEEEEEET-----------------TSEEEEEETTTCCEEEEEECSSCEEEEEECTTSCE
T ss_pred             CC-----ccceeEEEECCCCCEEEEecC-----------------CCcEEEEECCCCeEEEEecCCCcEEEEEECCCCCE
Confidence            11     134688999999987766543                 58899999887776655445566789999999998


Q ss_pred             EEEEe
Q 026389          232 LVVCE  236 (239)
Q Consensus       232 lyvad  236 (239)
                      |+++.
T Consensus       321 l~~~~  325 (337)
T 1gxr_A          321 IVTGS  325 (337)
T ss_dssp             EEEEE
T ss_pred             EEEec
Confidence            87764

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=98.56  E-value=1.8e-06  Score=76.44  Aligned_cols=130  Identities=12%  Similarity=-0.026  Sum_probs=84.1

Q ss_pred             CCEEEEeC-----CCeEEEEecC-CcEEEeeeccCcCccCeEEcCCC-CEEEEeCC---------CCeE-EEc-cCC--c
Q 026389           88 GVLYTATR-----DGWIKRLHKN-GTWENWKLIGGDTLLGITTTQEN-EILVCDAD---------KGLL-KVT-EEG--V  147 (239)
Q Consensus        88 G~ly~~~~-----~g~I~~~~~~-G~~~~~~~~~~~p~~Gl~~d~~G-~L~v~d~~---------~g~~-~v~-~~g--~  147 (239)
                      .++|+.+.     +++|..+|.+ +++......+..|  ++++++|| .|||++..         .+.+ .+| .++  .
T Consensus        45 ~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P--~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~  122 (386)
T 3sjl_D           45 RRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP--NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPT  122 (386)
T ss_dssp             TEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEE
T ss_pred             CEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCC--cEEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEE
Confidence            47898874     6899999974 5554444556667  59999999 59999842         2334 455 333  2


Q ss_pred             eEEecccCCc---cccccccEEEcCCC-CEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecCC----CCC
Q 026389          148 TVLASHVNGS---RINLADDLIAATDG-SIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDS----LFF  219 (239)
Q Consensus       148 ~~l~~~~~g~---~~~~pn~l~vd~dG-~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~~----l~~  219 (239)
                      ..+.- ..|.   ....|.++++++|| ++|+++..                +.+.|..+|..++++..-+..    ..+
T Consensus       123 ~~I~v-~~g~r~~~g~~P~~~a~spDGk~lyVan~~----------------~~~~VsVID~~t~~vv~tI~v~g~~~~~  185 (386)
T 3sjl_D          123 ADIEL-PDAPRFLVGTYPWMTSLTPDGKTLLFYQFS----------------PAPAVGVVDLEGKAFKRMLDVPDCYHIF  185 (386)
T ss_dssp             EEEEE-TTCCCCCBSCCGGGEEECTTSSEEEEEECS----------------SSCEEEEEETTTTEEEEEEECCSEEEEE
T ss_pred             EEEEC-CCccccccCCCCceEEEcCCCCEEEEEEcC----------------CCCeEEEEECCCCcEEEEEECCCcceee
Confidence            22211 1111   12479999999999 68999743                136788899888876443321    224


Q ss_pred             cce----EEEcCCCCEEEEEe
Q 026389          220 ANG----VALSKDEDYLVVCE  236 (239)
Q Consensus       220 pnG----ia~s~dg~~lyvad  236 (239)
                      |.|    +++++||+.+||+-
T Consensus       186 P~g~~~~~~~~~DG~~~~v~~  206 (386)
T 3sjl_D          186 PTAPDTFFMHCRDGSLAKVAF  206 (386)
T ss_dssp             EEETTEEEEEETTSCEEEEEC
T ss_pred             cCCCceeEEECCCCCEEEEEC
Confidence            656    48888998877753

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=98.56  E-value=3.7e-06  Score=68.62  Aligned_cols=138  Identities=11%  Similarity=0.010  Sum_probs=90.7

Q ss_pred             CCcceEEEcCCCCEEEEeCCCeEEEEecCC--cEEEeeecc--CcCccCeEEcCCCCEEEEeC-----CCCeEEEcc-CC
Q 026389           77 NGPEDVCVDRNGVLYTATRDGWIKRLHKNG--TWENWKLIG--GDTLLGITTTQENEILVCDA-----DKGLLKVTE-EG  146 (239)
Q Consensus        77 ~gPe~ia~d~~G~ly~~~~~g~I~~~~~~G--~~~~~~~~~--~~p~~Gl~~d~~G~L~v~d~-----~~g~~~v~~-~g  146 (239)
                      ....+++|+++|..++...++.|+.++.++  +........  .... .+++.++|+.+++..     ...++.++. .+
T Consensus        42 ~~v~~~~~spdg~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~-~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~  120 (297)
T 2ojh_A           42 ELFEAPNWSPDGKYLLLNSEGLLYRLSLAGDPSPEKVDTGFATICNN-DHGISPDGALYAISDKVEFGKSAIYLLPSTGG  120 (297)
T ss_dssp             SCCEEEEECTTSSEEEEEETTEEEEEESSSCCSCEECCCTTCCCBCS-CCEECTTSSEEEEEECTTTSSCEEEEEETTCC
T ss_pred             cceEeeEECCCCCEEEEEcCCeEEEEeCCCCCCceEecccccccccc-ceEECCCCCEEEEEEeCCCCcceEEEEECCCC
Confidence            356788999999866555688999999744  444333222  3456 899999997544433     134455553 44


Q ss_pred             -ceEEecccCCccccccccEEEcCCCC-EEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecCCCCCcceEE
Q 026389          147 -VTVLASHVNGSRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVA  224 (239)
Q Consensus       147 -~~~l~~~~~g~~~~~pn~l~vd~dG~-iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~~l~~pnGia  224 (239)
                       ...+...      ...+.+++.+||+ ++++....               +.-+|+.++.++++...+.........++
T Consensus       121 ~~~~~~~~------~~~~~~~~spdg~~l~~~~~~~---------------~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  179 (297)
T 2ojh_A          121 TPRLMTKN------LPSYWHGWSPDGKSFTYCGIRD---------------QVFDIYSMDIDSGVETRLTHGEGRNDGPD  179 (297)
T ss_dssp             CCEECCSS------SSEEEEEECTTSSEEEEEEEET---------------TEEEEEEEETTTCCEEECCCSSSCEEEEE
T ss_pred             ceEEeecC------CCccceEECCCCCEEEEEECCC---------------CceEEEEEECCCCcceEcccCCCccccce
Confidence             4433221      1256789999995 56554320               12378888888788777766666778999


Q ss_pred             EcCCCCEEEEEe
Q 026389          225 LSKDEDYLVVCE  236 (239)
Q Consensus       225 ~s~dg~~lyvad  236 (239)
                      ++|||++|+++.
T Consensus       180 ~s~dg~~l~~~~  191 (297)
T 2ojh_A          180 YSPDGRWIYFNS  191 (297)
T ss_dssp             ECTTSSEEEEEE
T ss_pred             ECCCCCEEEEEe
Confidence            999999887653

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=98.55  E-value=1.6e-06  Score=82.78  Aligned_cols=135  Identities=10%  Similarity=0.098  Sum_probs=96.0

Q ss_pred             cceEEEcCCCCEEEEeCCCeEEEEecC-CcEEEeeec------cCcCccCeEEcCCCCEEEEeCCCCeEEEccC-C-ceE
Q 026389           79 PEDVCVDRNGVLYTATRDGWIKRLHKN-GTWENWKLI------GGDTLLGITTTQENEILVCDADKGLLKVTEE-G-VTV  149 (239)
Q Consensus        79 Pe~ia~d~~G~ly~~~~~g~I~~~~~~-G~~~~~~~~------~~~p~~Gl~~d~~G~L~v~d~~~g~~~v~~~-g-~~~  149 (239)
                      ..+++.|++|+||++.. +.|++++++ ++++.+...      ..... .+..|.+|+||++..+.|+++++++ + .+.
T Consensus       452 v~~i~~d~~g~lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~-~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~  529 (781)
T 3v9f_A          452 VRVFYEDKNKKIWIGTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVR-SIAQDSEGRFWIGTFGGGVGIYTPDMQLVRK  529 (781)
T ss_dssp             EEEEEECTTSEEEEEET-TEEEEEESSSSSCCEEECTTTSSCSCSCEE-EEEECTTCCEEEEESSSCEEEECTTCCEEEE
T ss_pred             EEEEEECCCCCEEEEEC-CceEEEeCCCCeEEecccCcccccccceeE-EEEEcCCCCEEEEEcCCCEEEEeCCCCeEEE
Confidence            45688889999999987 679999974 455444322      23456 7889999999999988899999854 4 444


Q ss_pred             EecccCCccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEec--CCCC--CcceEEE
Q 026389          150 LASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILL--DSLF--FANGVAL  225 (239)
Q Consensus       150 l~~~~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~--~~l~--~pnGia~  225 (239)
                      +.. ..+-+-+..+.+..|++|+||++...                  |-+++||+++++.+...  +++.  ..++++.
T Consensus       530 ~~~-~~~l~~~~i~~i~~d~~g~lWi~T~~------------------Glv~~~d~~~~~~~~~~~~~gl~~~~i~~i~~  590 (781)
T 3v9f_A          530 FNQ-YEGFCSNTINQIYRSSKGQMWLATGE------------------GLVCFPSARNFDYQVFQRKEGLPNTHIRAISE  590 (781)
T ss_dssp             ECT-TTTCSCSCEEEEEECTTSCEEEEETT------------------EEEEESCTTTCCCEEECGGGTCSCCCCCEEEE
T ss_pred             ccC-CCCCCCCeeEEEEECCCCCEEEEECC------------------CceEEECCCCCcEEEccccCCCCCceEEEEEE
Confidence            432 23334456788999999999998743                  43489999877766553  3332  3468888


Q ss_pred             cCCCCEEEEE
Q 026389          226 SKDEDYLVVC  235 (239)
Q Consensus       226 s~dg~~lyva  235 (239)
                      +++|+ ||++
T Consensus       591 d~~g~-lW~~  599 (781)
T 3v9f_A          591 DKNGN-IWAS  599 (781)
T ss_dssp             CSSSC-EEEE
T ss_pred             CCCCC-EEEE
Confidence            88887 5554

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.55  E-value=2.3e-06  Score=71.78  Aligned_cols=138  Identities=12%  Similarity=0.056  Sum_probs=88.9

Q ss_pred             eEeccCCcCCcceEEEcCCCCEEEEe-CCCeEEEEec-CCcEEEeeeccCcC--ccCeEEcCCCCEEEEeCCCCeEEE-c
Q 026389           69 TRLGEGILNGPEDVCVDRNGVLYTAT-RDGWIKRLHK-NGTWENWKLIGGDT--LLGITTTQENEILVCDADKGLLKV-T  143 (239)
Q Consensus        69 ~~l~~g~~~gPe~ia~d~~G~ly~~~-~~g~I~~~~~-~G~~~~~~~~~~~p--~~Gl~~d~~G~L~v~d~~~g~~~v-~  143 (239)
                      +.++.+.-..-.|+.++ ++.||++. .+|+|.++|. +|++..-. ....+  . |++++ .++||+++...+.+.+ |
T Consensus        47 ~~~phd~~~ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~Fge-Git~~-g~~Ly~ltw~~~~v~V~D  122 (268)
T 3nok_A           47 REYPHATNAFTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAE-GLASD-GERLYQLTWTEGLLFTWS  122 (268)
T ss_dssp             EEEECCTTCCEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEE-EEEEC-SSCEEEEESSSCEEEEEE
T ss_pred             EEEcCCCccccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCccee-EEEEe-CCEEEEEEccCCEEEEEE
Confidence            34444433445799998 58999887 6788999996 56642222 33444  4 57775 3599999987777665 4


Q ss_pred             c-CC--ceEEecccCCccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEec----C-
Q 026389          144 E-EG--VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILL----D-  215 (239)
Q Consensus       144 ~-~g--~~~l~~~~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~----~-  215 (239)
                      . ++  +..+.  +.+    ...+++.| .+++|+||.+                  ++|+.+|+++.++..-+    . 
T Consensus       123 ~~Tl~~~~ti~--~~~----eGwGLt~D-g~~L~vSdGs------------------~~l~~iDp~T~~v~~~I~V~~~g  177 (268)
T 3nok_A          123 GMPPQRERTTR--YSG----EGWGLCYW-NGKLVRSDGG------------------TMLTFHEPDGFALVGAVQVKLRG  177 (268)
T ss_dssp             TTTTEEEEEEE--CSS----CCCCEEEE-TTEEEEECSS------------------SEEEEECTTTCCEEEEEECEETT
T ss_pred             CCcCcEEEEEe--CCC----ceeEEecC-CCEEEEECCC------------------CEEEEEcCCCCeEEEEEEeCCCC
Confidence            3 44  22332  122    13566644 2489999854                  78999999987654332    1 


Q ss_pred             -CCCCcceEEEcCCCCEEEEEeC
Q 026389          216 -SLFFANGVALSKDEDYLVVCET  237 (239)
Q Consensus       216 -~l~~pnGia~s~dg~~lyvadt  237 (239)
                       .+.++|++.+. || .||++..
T Consensus       178 ~~v~~lNeLe~~-dG-~lyanvw  198 (268)
T 3nok_A          178 QPVELINELECA-NG-VIYANIW  198 (268)
T ss_dssp             EECCCEEEEEEE-TT-EEEEEET
T ss_pred             cccccccccEEe-CC-EEEEEEC
Confidence             24577999987 66 5888764

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=98.54  E-value=3.8e-06  Score=76.21  Aligned_cols=136  Identities=16%  Similarity=0.231  Sum_probs=96.0

Q ss_pred             CcceEEEcCCCCE-EEEeCCCeEEEEecCCcE-EEeeeccCcCccCeEEcCCCCEEEEeCCCCeEEEc-cCC--ceEEec
Q 026389           78 GPEDVCVDRNGVL-YTATRDGWIKRLHKNGTW-ENWKLIGGDTLLGITTTQENEILVCDADKGLLKVT-EEG--VTVLAS  152 (239)
Q Consensus        78 gPe~ia~d~~G~l-y~~~~~g~I~~~~~~G~~-~~~~~~~~~p~~Gl~~d~~G~L~v~d~~~g~~~v~-~~g--~~~l~~  152 (239)
                      ...+++++++|.. .+++.++.|..|+.+++. ..+........ ++++.++++++++-...+.+++. .++  ...+..
T Consensus       387 ~v~~~~~s~dg~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~v~-~~~~s~d~~~l~~~~~d~~v~~w~~~~~~~~~~~~  465 (577)
T 2ymu_A          387 SVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVW-GVAFSPDDQTIASASDDKTVKLWNRNGQLLQTLTG  465 (577)
T ss_dssp             CEEEEEECTTSSCEEEEETTSEEEEECTTCCEEEEEECCSSCEE-EEEECTTSSEEEEEETTSEEEEEETTSCEEEEEEC
T ss_pred             CeEEEEECCCCCEEEEEeCCCEEEEEeCCCCEEEEecCCCCCeE-EEEECCCCCEEEEEcCCCEEEEEECCCCEEEEEcC
Confidence            4567999998864 467789999999987764 33333344556 89999999877776667777775 555  333322


Q ss_pred             ccCCccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecCCCCCcceEEEcCCCCEE
Q 026389          153 HVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYL  232 (239)
Q Consensus       153 ~~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~~l~~pnGia~s~dg~~l  232 (239)
                      . .    .....++++|||++.++-..                 .+.|..||.++..+..+...-...+.|+|+|||++|
T Consensus       466 ~-~----~~v~~~~~spd~~~las~~~-----------------d~~i~iw~~~~~~~~~~~~h~~~v~~l~~s~dg~~l  523 (577)
T 2ymu_A          466 H-S----SSVRGVAFSPDGQTIASASD-----------------DKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTI  523 (577)
T ss_dssp             C-S----SCEEEEEECTTSCEEEEEET-----------------TSEEEEEETTSCEEEEEECCSSCEEEEEECTTSSCE
T ss_pred             C-C----CCEEEEEEcCCCCEEEEEeC-----------------CCEEEEEcCCCCEEEEEeCCCCCEEEEEEcCCCCEE
Confidence            1 1    23678999999988777544                 478888998755555555444567899999999988


Q ss_pred             EEEe
Q 026389          233 VVCE  236 (239)
Q Consensus       233 yvad  236 (239)
                      ..+.
T Consensus       524 ~s~~  527 (577)
T 2ymu_A          524 ASAS  527 (577)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            7654

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.54  E-value=2.2e-06  Score=71.72  Aligned_cols=140  Identities=19%  Similarity=0.105  Sum_probs=88.9

Q ss_pred             ceEeccCCcCCcceEEEcCCCCEEEEe-CC--CeEEEEec-CCcEEEeeeccCcC--ccCeEEcCCCCEEEEeCCCCeEE
Q 026389           68 VTRLGEGILNGPEDVCVDRNGVLYTAT-RD--GWIKRLHK-NGTWENWKLIGGDT--LLGITTTQENEILVCDADKGLLK  141 (239)
Q Consensus        68 ~~~l~~g~~~gPe~ia~d~~G~ly~~~-~~--g~I~~~~~-~G~~~~~~~~~~~p--~~Gl~~d~~G~L~v~d~~~g~~~  141 (239)
                      ++.++-+.-..-.|+.++ +|.||.+. ..  .+|.++|. +|++..-.....++  . |++++ .++||+++...+.+.
T Consensus        34 v~~~phd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~Fge-Git~~-g~~ly~ltw~~~~v~  110 (262)
T 3nol_A           34 VHSYPHDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGE-GISDW-KDKIVGLTWKNGLGF  110 (262)
T ss_dssp             EEEEECCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEE-EEEEE-TTEEEEEESSSSEEE
T ss_pred             EEEecCCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCcccee-EEEEe-CCEEEEEEeeCCEEE
Confidence            344454433344899998 78999776 33  48999997 57764434444455  4 57775 458999998777665


Q ss_pred             E-cc-CC--ceEEecccCCccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecC--
Q 026389          142 V-TE-EG--VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLD--  215 (239)
Q Consensus       142 v-~~-~g--~~~l~~~~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~--  215 (239)
                      + |. +.  ...+.-  .+    ...+++.| .+.+|+||.+                  ++|+.+|+.+.++..-+.  
T Consensus       111 v~D~~t~~~~~ti~~--~~----eG~glt~d-g~~L~~SdGs------------------~~i~~iDp~T~~v~~~I~V~  165 (262)
T 3nol_A          111 VWNIRNLRQVRSFNY--DG----EGWGLTHN-DQYLIMSDGT------------------PVLRFLDPESLTPVRTITVT  165 (262)
T ss_dssp             EEETTTCCEEEEEEC--SS----CCCCEEEC-SSCEEECCSS------------------SEEEEECTTTCSEEEEEECE
T ss_pred             EEECccCcEEEEEEC--CC----CceEEecC-CCEEEEECCC------------------CeEEEEcCCCCeEEEEEEec
Confidence            5 53 44  233321  11    22455543 2489999854                  689999999876543321  


Q ss_pred             ----CCCCcceEEEcCCCCEEEEEeC
Q 026389          216 ----SLFFANGVALSKDEDYLVVCET  237 (239)
Q Consensus       216 ----~l~~pnGia~s~dg~~lyvadt  237 (239)
                          .+.++|.+.+. || .||++..
T Consensus       166 ~~g~~~~~lNELe~~-~G-~lyan~w  189 (262)
T 3nol_A          166 AHGEELPELNELEWV-DG-EIFANVW  189 (262)
T ss_dssp             ETTEECCCEEEEEEE-TT-EEEEEET
T ss_pred             cCCccccccceeEEE-CC-EEEEEEc
Confidence                24667888887 66 5888753

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=98.53  E-value=1.3e-06  Score=80.44  Aligned_cols=133  Identities=11%  Similarity=0.010  Sum_probs=90.9

Q ss_pred             EEcCCCCEEEEe-CCCeEEEEec-CCcEEEeeeccCcCccCeEEcCCCC-EEEEeCCCCeEEE-cc--CCceEEecccCC
Q 026389           83 CVDRNGVLYTAT-RDGWIKRLHK-NGTWENWKLIGGDTLLGITTTQENE-ILVCDADKGLLKV-TE--EGVTVLASHVNG  156 (239)
Q Consensus        83 a~d~~G~ly~~~-~~g~I~~~~~-~G~~~~~~~~~~~p~~Gl~~d~~G~-L~v~d~~~g~~~v-~~--~g~~~l~~~~~g  156 (239)
                      +++++|.+|++. .++.|..||. .|+.......+..++ +++++++|+ ||+++.. +.+.+ +.  ...+.+.....|
T Consensus       144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~~~-~v~~spdg~~l~v~~~d-~~V~v~D~~~~t~~~~~~i~~g  221 (543)
T 1nir_A          144 DLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYAVH-ISRMSASGRYLLVIGRD-ARIDMIDLWAKEPTKVAEIKIG  221 (543)
T ss_dssp             CCCGGGEEEEEEGGGTEEEEEETTTCCEEEEEECSTTEE-EEEECTTSCEEEEEETT-SEEEEEETTSSSCEEEEEEECC
T ss_pred             ccCCCCEEEEEEcCCCeEEEEECCCceEEEEEecCcccc-eEEECCCCCEEEEECCC-CeEEEEECcCCCCcEEEEEecC
Confidence            478889999776 7899999996 455533334344588 999999994 8888877 55554 44  222332221122


Q ss_pred             ccccccccEEEcC----CC-CEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecCC------------CCC
Q 026389          157 SRINLADDLIAAT----DG-SIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDS------------LFF  219 (239)
Q Consensus       157 ~~~~~pn~l~vd~----dG-~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~~------------l~~  219 (239)
                         ..|..+++++    || .+|+++..                 .+.|..||..+++....+..            -..
T Consensus       222 ---~~p~~va~sp~~~~dg~~l~v~~~~-----------------~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~  281 (543)
T 1nir_A          222 ---IEARSVESSKFKGYEDRYTIAGAYW-----------------PPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPR  281 (543)
T ss_dssp             ---SEEEEEEECCSTTCTTTEEEEEEEE-----------------SSEEEEEETTTCCEEEEEECCEECSSSCCEESCCC
T ss_pred             ---CCcceEEeCCCcCCCCCEEEEEEcc-----------------CCeEEEEeccccccceeecccCcccCccccccCCc
Confidence               3588999999    99 57777632                 36788899888776544322            125


Q ss_pred             cceEEEcCCCCEEEEEeC
Q 026389          220 ANGVALSKDEDYLVVCET  237 (239)
Q Consensus       220 pnGia~s~dg~~lyvadt  237 (239)
                      +.+|++++|++.+|++..
T Consensus       282 v~~i~~s~~~~~~~vs~~  299 (543)
T 1nir_A          282 VAAIIASHEHPEFIVNVK  299 (543)
T ss_dssp             EEEEEECSSSSEEEEEET
T ss_pred             eEEEEECCCCCEEEEEEC
Confidence            678999999998888753

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=98.53  E-value=1.6e-06  Score=77.70  Aligned_cols=129  Identities=11%  Similarity=-0.036  Sum_probs=85.7

Q ss_pred             CCEEEEeC-C----CeEEEEec-CCcEEEeeeccCcCccCeEEcCCC-CEEEEeCC---------CC-eEEEc-cCC--c
Q 026389           88 GVLYTATR-D----GWIKRLHK-NGTWENWKLIGGDTLLGITTTQEN-EILVCDAD---------KG-LLKVT-EEG--V  147 (239)
Q Consensus        88 G~ly~~~~-~----g~I~~~~~-~G~~~~~~~~~~~p~~Gl~~d~~G-~L~v~d~~---------~g-~~~v~-~~g--~  147 (239)
                      .++|+.+. .    ++|..||. ++++......+..|  |+++++|| .|||++..         .+ +..+| .++  .
T Consensus        85 ~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv  162 (426)
T 3c75_H           85 RRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPI  162 (426)
T ss_dssp             TEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEE
T ss_pred             CEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEE
Confidence            36998874 2    69999997 45554444556666  89999999 59999852         23 44456 344  2


Q ss_pred             eEEecccC-Ccc---ccccccEEEcCCC-CEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecCC----CC
Q 026389          148 TVLASHVN-GSR---INLADDLIAATDG-SIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDS----LF  218 (239)
Q Consensus       148 ~~l~~~~~-g~~---~~~pn~l~vd~dG-~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~~----l~  218 (239)
                      ..+.  .. ...   ...|.++++++|| ++|+++..                +.+.|.++|..++++..-+.-    ..
T Consensus       163 ~~I~--v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~----------------~~~~VsVID~~t~kvv~~I~v~g~~~~  224 (426)
T 3c75_H          163 ADIE--LPDAPRFLVGTYQWMNALTPDNKNLLFYQFS----------------PAPAVGVVDLEGKTFDRMLDVPDCYHI  224 (426)
T ss_dssp             EEEE--ETTCCCCCBSCCGGGSEECTTSSEEEEEECS----------------SSCEEEEEETTTTEEEEEEECCSEEEE
T ss_pred             EEEE--CCCccccccCCCcceEEEcCCCCEEEEEecC----------------CCCeEEEEECCCCeEEEEEEcCCceee
Confidence            2221  11 111   2468999999999 79999743                146899999988876443322    23


Q ss_pred             Ccce----EEEcCCCCEEEEEe
Q 026389          219 FANG----VALSKDEDYLVVCE  236 (239)
Q Consensus       219 ~pnG----ia~s~dg~~lyvad  236 (239)
                      .|.|    +++++||+.+||..
T Consensus       225 ~p~g~~~~v~~~~dG~~~~V~~  246 (426)
T 3c75_H          225 FPASPTVFYMNCRDGSLARVDF  246 (426)
T ss_dssp             EEEETTEEEEEETTSSEEEEEC
T ss_pred             ccCCCcEEEEEcCCCCEEEEEC
Confidence            4556    88889999887764

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.49  E-value=9.4e-06  Score=67.27  Aligned_cols=139  Identities=17%  Similarity=0.095  Sum_probs=87.8

Q ss_pred             eccCCcCCcceEEEcCCCCEEEEeC---CCeEEEEec-CCcEEEeeeccCcC--ccCeEEcCCCCEEEEeCCCCeEEE-c
Q 026389           71 LGEGILNGPEDVCVDRNGVLYTATR---DGWIKRLHK-NGTWENWKLIGGDT--LLGITTTQENEILVCDADKGLLKV-T  143 (239)
Q Consensus        71 l~~g~~~gPe~ia~d~~G~ly~~~~---~g~I~~~~~-~G~~~~~~~~~~~p--~~Gl~~d~~G~L~v~d~~~g~~~v-~  143 (239)
                      ++-..-..-.|+.++. +.||.+..   +.+|.++|. +|++..-.....++  . |++++ .++||+++...+.+.+ |
T Consensus        15 ~phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fge-Gi~~~-~~~ly~ltw~~~~v~v~D   91 (243)
T 3mbr_X           15 YPHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGA-GIVAW-RDRLIQLTWRNHEGFVYD   91 (243)
T ss_dssp             EECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEE-EEEEE-TTEEEEEESSSSEEEEEE
T ss_pred             cCCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCccee-EEEEe-CCEEEEEEeeCCEEEEEE
Confidence            3333345667899985 89998873   358999997 57765444444454  4 56665 4689999987777665 4


Q ss_pred             cCCceEEecc-cCCccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecC------C
Q 026389          144 EEGVTVLASH-VNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLD------S  216 (239)
Q Consensus       144 ~~g~~~l~~~-~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~------~  216 (239)
                      .+-.+++... ..+    ...+++-| .+++|+||.+                  ++|+.+|+.+.++..-+.      .
T Consensus        92 ~~tl~~~~ti~~~~----~Gwglt~d-g~~L~vSdgs------------------~~l~~iDp~t~~~~~~I~V~~~g~~  148 (243)
T 3mbr_X           92 LATLTPRARFRYPG----EGWALTSD-DSHLYMSDGT------------------AVIRKLDPDTLQQVGSIKVTAGGRP  148 (243)
T ss_dssp             TTTTEEEEEEECSS----CCCEEEEC-SSCEEEECSS------------------SEEEEECTTTCCEEEEEECEETTEE
T ss_pred             CCcCcEEEEEeCCC----CceEEeeC-CCEEEEECCC------------------CeEEEEeCCCCeEEEEEEEccCCcc
Confidence            3222332221 112    23455533 2489999954                  789999999876543321      2


Q ss_pred             CCCcceEEEcCCCCEEEEEeC
Q 026389          217 LFFANGVALSKDEDYLVVCET  237 (239)
Q Consensus       217 l~~pnGia~s~dg~~lyvadt  237 (239)
                      +.+.|.+.+. +| .||++..
T Consensus       149 ~~~lNeLe~~-~G-~lyanvw  167 (243)
T 3mbr_X          149 LDNLNELEWV-NG-ELLANVW  167 (243)
T ss_dssp             CCCEEEEEEE-TT-EEEEEET
T ss_pred             cccceeeEEe-CC-EEEEEEC
Confidence            4577888876 55 4887753

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.48  E-value=1.2e-06  Score=81.07  Aligned_cols=106  Identities=17%  Similarity=0.165  Sum_probs=72.5

Q ss_pred             eeeccCcCccCeEEcCCCC-EEEEeCCCCeEEEc-cCC-c-----------eEEecccCCccccccccEEEcCCCCEEEE
Q 026389          111 WKLIGGDTLLGITTTQENE-ILVCDADKGLLKVT-EEG-V-----------TVLASHVNGSRINLADDLIAATDGSIYFS  176 (239)
Q Consensus       111 ~~~~~~~p~~Gl~~d~~G~-L~v~d~~~g~~~v~-~~g-~-----------~~l~~~~~g~~~~~pn~l~vd~dG~iy~t  176 (239)
                      ....+..|+ |+.+++||+ +||++.....+.+. -+. .           .+......|   ..|..+++++||++|++
T Consensus       272 ~Ipvg~~Ph-Gv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG---~gP~h~aF~~dG~aY~t  347 (595)
T 1fwx_A          272 YIPIANNPH-GCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELG---LGPLHTAFDGRGNAYTS  347 (595)
T ss_dssp             EEEEESSCC-CEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCC---SCEEEEEECTTSEEEEE
T ss_pred             EEecCCCce-EEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCCC---CCcceEEECCCCeEEEE
Confidence            344567899 999999995 88998777666553 221 1           122222223   46999999999999999


Q ss_pred             eCCCCcCcccccccceeecCCceEEEEeCCC----------CeEEEecCCCCCc------ceEEEcCCCCEEEEEeC
Q 026389          177 VASTKFGLHNWGLDLLEAKPHGKLLKYDPSL----------NETSILLDSLFFA------NGVALSKDEDYLVVCET  237 (239)
Q Consensus       177 d~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~----------~~~~~~~~~l~~p------nGia~s~dg~~lyvadt  237 (239)
                      ..-                 .+.|.+||.++          .++..-++.-+.|      .|+++++||++||+++-
T Consensus       348 ~~l-----------------dsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk  407 (595)
T 1fwx_A          348 LFL-----------------DSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSK  407 (595)
T ss_dssp             ETT-----------------TTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEES
T ss_pred             Eec-----------------CCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCC
Confidence            754                 46777787654          2333333334455      67888999999999874

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=98.48  E-value=4.5e-06  Score=79.66  Aligned_cols=135  Identities=11%  Similarity=0.071  Sum_probs=95.8

Q ss_pred             CcceEEEcCCCCEEEEeCCCeEEEEecCC-cEEEeeecc----CcCccCeEEcCCCCEEEEeCCCCe-EEEcc-CC-ceE
Q 026389           78 GPEDVCVDRNGVLYTATRDGWIKRLHKNG-TWENWKLIG----GDTLLGITTTQENEILVCDADKGL-LKVTE-EG-VTV  149 (239)
Q Consensus        78 gPe~ia~d~~G~ly~~~~~g~I~~~~~~G-~~~~~~~~~----~~p~~Gl~~d~~G~L~v~d~~~g~-~~v~~-~g-~~~  149 (239)
                      ...+++.|++|+||++...+.|+++++++ +++.+....    .... .+..|.+|+||++.. .|+ .++++ .+ .+.
T Consensus       496 ~i~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~l~~~~i~-~i~~d~~g~lWi~T~-~Glv~~~d~~~~~~~~  573 (781)
T 3v9f_A          496 FVRSIAQDSEGRFWIGTFGGGVGIYTPDMQLVRKFNQYEGFCSNTIN-QIYRSSKGQMWLATG-EGLVCFPSARNFDYQV  573 (781)
T ss_dssp             CEEEEEECTTCCEEEEESSSCEEEECTTCCEEEEECTTTTCSCSCEE-EEEECTTSCEEEEET-TEEEEESCTTTCCCEE
T ss_pred             eeEEEEEcCCCCEEEEEcCCCEEEEeCCCCeEEEccCCCCCCCCeeE-EEEECCCCCEEEEEC-CCceEEECCCCCcEEE
Confidence            45678999999999999766799999754 455443222    2345 688899999999987 788 77774 44 444


Q ss_pred             EecccCCccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEec--CCCCC----cceE
Q 026389          150 LASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILL--DSLFF----ANGV  223 (239)
Q Consensus       150 l~~~~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~--~~l~~----pnGi  223 (239)
                      +. ..+|-+-+...++..|++|+||++..                   ..|++||+++++.+..-  +++..    .+.+
T Consensus       574 ~~-~~~gl~~~~i~~i~~d~~g~lW~~t~-------------------~Gl~~~~~~~~~~~~~~~~dGl~~~~f~~~~~  633 (781)
T 3v9f_A          574 FQ-RKEGLPNTHIRAISEDKNGNIWASTN-------------------TGISCYITSKKCFYTYDHSNNIPQGSFISGCV  633 (781)
T ss_dssp             EC-GGGTCSCCCCCEEEECSSSCEEEECS-------------------SCEEEEETTTTEEEEECGGGTCCSSCEEEEEE
T ss_pred             cc-ccCCCCCceEEEEEECCCCCEEEEcC-------------------CceEEEECCCCceEEecccCCccccccccCce
Confidence            43 23444445567999999999999963                   24899999988877663  44432    3567


Q ss_pred             EEcCCCCEEEEE
Q 026389          224 ALSKDEDYLVVC  235 (239)
Q Consensus       224 a~s~dg~~lyva  235 (239)
                      +.++||+ ||+.
T Consensus       634 ~~~~~G~-l~~g  644 (781)
T 3v9f_A          634 TKDHNGL-IYFG  644 (781)
T ss_dssp             EECTTSC-EEEE
T ss_pred             EECCCCE-EEEE
Confidence            7888887 5554

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=98.46  E-value=6.6e-06  Score=78.68  Aligned_cols=136  Identities=10%  Similarity=0.207  Sum_probs=95.7

Q ss_pred             ceEEEcCCCCEEEEeCCCeEEEEecC-CcEEEeeec---------cCcCccCeEEcCCCC-EEEEeCCCCeEEEcc-CC-
Q 026389           80 EDVCVDRNGVLYTATRDGWIKRLHKN-GTWENWKLI---------GGDTLLGITTTQENE-ILVCDADKGLLKVTE-EG-  146 (239)
Q Consensus        80 e~ia~d~~G~ly~~~~~g~I~~~~~~-G~~~~~~~~---------~~~p~~Gl~~d~~G~-L~v~d~~~g~~~v~~-~g-  146 (239)
                      .+++.|++|+||+++.++.|.++++. ++.+.+...         ..... .+..|.+|+ ||++....|+.+++. .+ 
T Consensus       360 ~~i~~d~~g~lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~-~i~~d~~g~~lWigt~~~Gl~~~d~~~~~  438 (795)
T 4a2l_A          360 SCIVEDKDKNLWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIK-AVYVDEKKSLVYIGTHAGGLSILHRNSGQ  438 (795)
T ss_dssp             EEEEECTTSCEEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEE-EEEEETTTTEEEEEETTTEEEEEETTTCC
T ss_pred             EEEEECCCCCEEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEE-EEEEcCCCCEEEEEeCcCceeEEeCCCCc
Confidence            46888999999999988899999974 455544321         12345 778889999 999988889999984 55 


Q ss_pred             ceEEecccCCccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecCC-----C--CC
Q 026389          147 VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDS-----L--FF  219 (239)
Q Consensus       147 ~~~l~~~~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~~-----l--~~  219 (239)
                      .+.+.....+.+-.....+..|++|+||++..                   +.|++||+++++.+.+...     +  ..
T Consensus       439 ~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt~-------------------~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~  499 (795)
T 4a2l_A          439 VENFNQRNSQLVNENVYAILPDGEGNLWLGTL-------------------SALVRFNPEQRSFTTIEKEKDGTPVVSKQ  499 (795)
T ss_dssp             EEEECTTTSCCSCSCEEEEEECSSSCEEEEES-------------------SCEEEEETTTTEEEECCBCTTCCBCCCCC
T ss_pred             EEEeecCCCCcCCCeeEEEEECCCCCEEEEec-------------------CceeEEeCCCCeEEEccccccccccCCce
Confidence            55543221112234567899999999999874                   2489999988877665421     2  23


Q ss_pred             cceEEEcCCCCEEEEEe
Q 026389          220 ANGVALSKDEDYLVVCE  236 (239)
Q Consensus       220 pnGia~s~dg~~lyvad  236 (239)
                      ...++.+++|+ ||++.
T Consensus       500 i~~i~~d~~g~-lWigt  515 (795)
T 4a2l_A          500 ITTLFRDSHKR-LWIGG  515 (795)
T ss_dssp             EEEEEECTTCC-EEEEE
T ss_pred             EEEEEECCCCC-EEEEe
Confidence            46788888887 55553

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=98.46  E-value=6.6e-06  Score=78.65  Aligned_cols=132  Identities=13%  Similarity=0.125  Sum_probs=93.1

Q ss_pred             cceEEEcCCCCEEEEeCCCeEEEEecCC-cEEEeee-------ccCcCccCeEEcCCCCEEEEeCCCCeEEEcc-CC-ce
Q 026389           79 PEDVCVDRNGVLYTATRDGWIKRLHKNG-TWENWKL-------IGGDTLLGITTTQENEILVCDADKGLLKVTE-EG-VT  148 (239)
Q Consensus        79 Pe~ia~d~~G~ly~~~~~g~I~~~~~~G-~~~~~~~-------~~~~p~~Gl~~d~~G~L~v~d~~~g~~~v~~-~g-~~  148 (239)
                      ..++..|++|+||++.. +.|++++++. +. .+..       ...... .+..|.+|+||++... |+.++++ .+ .+
T Consensus       500 i~~i~~d~~g~lWigt~-~Gl~~~~~~~~~~-~~~~~~~~~~l~~~~i~-~i~~d~~g~lWigT~~-Gl~~~d~~~~~~~  575 (795)
T 4a2l_A          500 ITTLFRDSHKRLWIGGE-EGLSVFKQEGLDI-QKASILPVSNVTKLFTN-CIYEASNGIIWVGTRE-GFYCFNEKDKQIK  575 (795)
T ss_dssp             EEEEEECTTCCEEEEES-SCEEEEEEETTEE-EECCCSCSCGGGGSCEE-EEEECTTSCEEEEESS-CEEEEETTTTEEE
T ss_pred             EEEEEECCCCCEEEEeC-CceEEEeCCCCeE-EEecCCCCCCCCCCeeE-EEEECCCCCEEEEeCC-CceeECCCCCcEE
Confidence            35688899999999987 6799998743 44 3321       112345 6888999999999876 9999985 44 44


Q ss_pred             EEecccCCccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEec--CCCCC----cce
Q 026389          149 VLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILL--DSLFF----ANG  222 (239)
Q Consensus       149 ~l~~~~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~--~~l~~----pnG  222 (239)
                      .+. ..+|-+-+....+..|++|+||++..                   ..|.+||+++++.+...  +++..    .++
T Consensus       576 ~~~-~~~gl~~~~i~~i~~d~~g~lWi~t~-------------------~Gl~~~~~~~~~~~~~~~~dGl~~~~f~~~~  635 (795)
T 4a2l_A          576 RYN-TTNGLPNNVVYGILEDSFGRLWLSTN-------------------RGISCFNPETEKFRNFTESDGLQSNQFNTAS  635 (795)
T ss_dssp             EEC-GGGTCSCSCEEEEEECTTSCEEEEET-------------------TEEEEEETTTTEEEEECGGGTCSCSCEEEEE
T ss_pred             EeC-CCCCCchhheEEEEECCCCCEEEEcC-------------------CceEEEcCCCCcEEEcCCcCCCccccCccCc
Confidence            442 23444444567899999999999973                   35899999988877653  34432    356


Q ss_pred             EEEcCCCCEEEEE
Q 026389          223 VALSKDEDYLVVC  235 (239)
Q Consensus       223 ia~s~dg~~lyva  235 (239)
                      ++.++||+ ||+.
T Consensus       636 ~~~~~~G~-l~~g  647 (795)
T 4a2l_A          636 YCRTSVGQ-MYFG  647 (795)
T ss_dssp             EEECTTSC-EEEE
T ss_pred             eeECCCCe-EEEe
Confidence            78888887 5554

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=98.45  E-value=2.2e-05  Score=66.81  Aligned_cols=135  Identities=16%  Similarity=0.193  Sum_probs=93.6

Q ss_pred             CcceEEEcCCCCEE-EEeCCCeEEEEec-CCcE-EEeeeccCcCccCeEEcCCCCEEEEeCCCCeEEEc--cCC--ceEE
Q 026389           78 GPEDVCVDRNGVLY-TATRDGWIKRLHK-NGTW-ENWKLIGGDTLLGITTTQENEILVCDADKGLLKVT--EEG--VTVL  150 (239)
Q Consensus        78 gPe~ia~d~~G~ly-~~~~~g~I~~~~~-~G~~-~~~~~~~~~p~~Gl~~d~~G~L~v~d~~~g~~~v~--~~g--~~~l  150 (239)
                      ...+++++++|..+ +++.+|.|..||. +++. ..+........ .+++.++|+++++-...+.+++.  ..+  ...+
T Consensus       166 ~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~-~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~  244 (321)
T 3ow8_A          166 FILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIR-SLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTL  244 (321)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCC-EEEECTTSCEEEEECTTSCEEEEETTTCCEEEEE
T ss_pred             eEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCcee-EEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEE
Confidence            34578999998755 6679999999996 4543 33332333456 89999999988877777777775  344  3333


Q ss_pred             ecccCCccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEec-CCCCCcceEEEcCCC
Q 026389          151 ASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILL-DSLFFANGVALSKDE  229 (239)
Q Consensus       151 ~~~~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~-~~l~~pnGia~s~dg  229 (239)
                      .    +. -.....+++.|+|..+++.+.                 .|.|..||..+++..... ..-....+++|++||
T Consensus       245 ~----~h-~~~v~~~~~sp~~~~l~s~s~-----------------D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g  302 (321)
T 3ow8_A          245 S----GH-ASWVLNVAFCPDDTHFVSSSS-----------------DKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNG  302 (321)
T ss_dssp             C----CC-SSCEEEEEECTTSSEEEEEET-----------------TSCEEEEETTTTEEEEEECCCSSCEEEEEECTTS
T ss_pred             c----CC-CCceEEEEECCCCCEEEEEeC-----------------CCcEEEEeCCCCEEEEEEcCCCCcEEEEEECCCC
Confidence            2    11 124678999999987777654                 578999998877654433 333456899999999


Q ss_pred             CEEEEE
Q 026389          230 DYLVVC  235 (239)
Q Consensus       230 ~~lyva  235 (239)
                      +.|+.+
T Consensus       303 ~~l~s~  308 (321)
T 3ow8_A          303 SKIVSV  308 (321)
T ss_dssp             SEEEEE
T ss_pred             CEEEEE
Confidence            987654

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=98.44  E-value=2.1e-05  Score=65.60  Aligned_cols=136  Identities=10%  Similarity=0.062  Sum_probs=91.1

Q ss_pred             CcceEEEcCCCC-EEEEeCCCeEEEEecCC-cE---EEeeeccCcCccCeEEcCCCCEEEEeCCCCeEEE-c-cCC--ce
Q 026389           78 GPEDVCVDRNGV-LYTATRDGWIKRLHKNG-TW---ENWKLIGGDTLLGITTTQENEILVCDADKGLLKV-T-EEG--VT  148 (239)
Q Consensus        78 gPe~ia~d~~G~-ly~~~~~g~I~~~~~~G-~~---~~~~~~~~~p~~Gl~~d~~G~L~v~d~~~g~~~v-~-~~g--~~  148 (239)
                      ...+++++++|+ |++++.+|.|..|+.+. +.   ..+........ .+++.++|+++++....+.+++ + .++  ..
T Consensus        99 ~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~  177 (337)
T 1gxr_A           99 YIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACY-ALAISPDSKVCFSCCSDGNIAVWDLHNQTLVR  177 (337)
T ss_dssp             BEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEE-EEEECTTSSEEEEEETTSCEEEEETTTTEEEE
T ss_pred             cEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceE-EEEECCCCCEEEEEeCCCcEEEEeCCCCceee
Confidence            456789999886 55777899999998643 31   22222334456 8899999976665544555555 4 344  23


Q ss_pred             EEecccCCccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecCCCCCcceEEEcCC
Q 026389          149 VLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKD  228 (239)
Q Consensus       149 ~l~~~~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~~l~~pnGia~s~d  228 (239)
                      .+...     -.....++++++|..+++...                 .|.|..||..+++.......-.....++++||
T Consensus       178 ~~~~~-----~~~i~~~~~~~~~~~l~~~~~-----------------dg~i~~~d~~~~~~~~~~~~~~~v~~~~~s~~  235 (337)
T 1gxr_A          178 QFQGH-----TDGASCIDISNDGTKLWTGGL-----------------DNTVRSWDLREGRQLQQHDFTSQIFSLGYCPT  235 (337)
T ss_dssp             EECCC-----SSCEEEEEECTTSSEEEEEET-----------------TSEEEEEETTTTEEEEEEECSSCEEEEEECTT
T ss_pred             eeecc-----cCceEEEEECCCCCEEEEEec-----------------CCcEEEEECCCCceEeeecCCCceEEEEECCC
Confidence            33211     124678999999976665443                 48899999988776555554556788999999


Q ss_pred             CCEEEEEe
Q 026389          229 EDYLVVCE  236 (239)
Q Consensus       229 g~~lyvad  236 (239)
                      +++++++.
T Consensus       236 ~~~l~~~~  243 (337)
T 1gxr_A          236 GEWLAVGM  243 (337)
T ss_dssp             SSEEEEEE
T ss_pred             CCEEEEEc
Confidence            99888764

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=98.38  E-value=2.3e-05  Score=66.97  Aligned_cols=137  Identities=9%  Similarity=0.058  Sum_probs=92.9

Q ss_pred             CcceEEEcCCCCEE-EEeCCCeEEEEec-CCcE-EEeeeccCcCccCeEEcCCCCEEEEeCCCCeEEEc--cCC--ceEE
Q 026389           78 GPEDVCVDRNGVLY-TATRDGWIKRLHK-NGTW-ENWKLIGGDTLLGITTTQENEILVCDADKGLLKVT--EEG--VTVL  150 (239)
Q Consensus        78 gPe~ia~d~~G~ly-~~~~~g~I~~~~~-~G~~-~~~~~~~~~p~~Gl~~d~~G~L~v~d~~~g~~~v~--~~g--~~~l  150 (239)
                      .-.++++.++|.++ +++.++.|..||. +++. ..+........ .+++.++|+++++-...+.+++.  ..+  ...+
T Consensus       186 ~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~-~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~  264 (340)
T 1got_B          186 DVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDIN-AICFFPNGNAFATGSDDATCRLFDLRADQELMTY  264 (340)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEE-EEEECTTSSEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred             ceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEE-EEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEE
Confidence            34578999988766 5668999999995 4443 33333344566 89999999888877777877775  344  2222


Q ss_pred             ecccCCccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEec-CCCCCcceEEEcCCC
Q 026389          151 ASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILL-DSLFFANGVALSKDE  229 (239)
Q Consensus       151 ~~~~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~-~~l~~pnGia~s~dg  229 (239)
                      ..  . ........++++++|+++++...                 .|.|..||..+++..... ..-...+.++|+|||
T Consensus       265 ~~--~-~~~~~v~~~~~s~~g~~l~~g~~-----------------d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~dg  324 (340)
T 1got_B          265 SH--D-NIICGITSVSFSKSGRLLLAGYD-----------------DFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDG  324 (340)
T ss_dssp             CC--T-TCCSCEEEEEECTTSSEEEEEET-----------------TSEEEEEETTTCCEEEEEECCSSCEEEEEECTTS
T ss_pred             cc--C-CcccceEEEEECCCCCEEEEECC-----------------CCeEEEEEcccCcEeeEeecCCCcEEEEEEcCCC
Confidence            11  1 11123678999999988777654                 588999998766544333 333456889999999


Q ss_pred             CEEEEE
Q 026389          230 DYLVVC  235 (239)
Q Consensus       230 ~~lyva  235 (239)
                      ++|..+
T Consensus       325 ~~l~s~  330 (340)
T 1got_B          325 MAVATG  330 (340)
T ss_dssp             SCEEEE
T ss_pred             CEEEEE
Confidence            977654

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=98.37  E-value=1.1e-05  Score=71.23  Aligned_cols=137  Identities=12%  Similarity=0.136  Sum_probs=89.0

Q ss_pred             CcceEEEcCCCC-EE-EEeCC--CeEEEEecC-CcEEEeeeccCcCccCeEEcCCCC-EEEEeCCC---CeEEEcc-CC-
Q 026389           78 GPEDVCVDRNGV-LY-TATRD--GWIKRLHKN-GTWENWKLIGGDTLLGITTTQENE-ILVCDADK---GLLKVTE-EG-  146 (239)
Q Consensus        78 gPe~ia~d~~G~-ly-~~~~~--g~I~~~~~~-G~~~~~~~~~~~p~~Gl~~d~~G~-L~v~d~~~---g~~~v~~-~g-  146 (239)
                      ...+++|+|||. |+ +++.+  ..|+.++.. ++...+........ .+++.+||+ |+++....   .++.++. .+ 
T Consensus       224 ~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~~~l~~~~~~~~-~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~  302 (415)
T 2hqs_A          224 HNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNT-EPTWFPDSQNLAFTSDQAGRPQVYKVNINGGA  302 (415)
T ss_dssp             CEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEECCCCSSCEE-EEEECTTSSEEEEEECTTSSCEEEEEETTSSC
T ss_pred             cccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCEEeCcCCCCccc-ceEECCCCCEEEEEECCCCCcEEEEEECCCCC
Confidence            345789999997 55 44444  459999964 55554444444556 789999997 55444323   3455563 44 


Q ss_pred             ceEEecccCCccccccccEEEcCCCC-EEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecCCCCCcceEEE
Q 026389          147 VTVLASHVNGSRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVAL  225 (239)
Q Consensus       147 ~~~l~~~~~g~~~~~pn~l~vd~dG~-iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~~l~~pnGia~  225 (239)
                      .+.+..  .+   .....+++++||+ |+++...               .+...|+.+|.++++.+.+... .....++|
T Consensus       303 ~~~l~~--~~---~~~~~~~~spdG~~l~~~~~~---------------~g~~~i~~~d~~~~~~~~l~~~-~~~~~~~~  361 (415)
T 2hqs_A          303 PQRITW--EG---SQNQDADVSSDGKFMVMVSSN---------------GGQQHIAKQDLATGGVQVLSST-FLDETPSL  361 (415)
T ss_dssp             CEECCC--SS---SEEEEEEECTTSSEEEEEEEC---------------SSCEEEEEEETTTCCEEECCCS-SSCEEEEE
T ss_pred             EEEEec--CC---CcccCeEECCCCCEEEEEECc---------------CCceEEEEEECCCCCEEEecCC-CCcCCeEE
Confidence            443322  11   2456789999995 5555432               1136899999998888766544 37789999


Q ss_pred             cCCCCEEEEEe
Q 026389          226 SKDEDYLVVCE  236 (239)
Q Consensus       226 s~dg~~lyvad  236 (239)
                      +|||+.|+++.
T Consensus       362 spdg~~l~~~s  372 (415)
T 2hqs_A          362 APNGTMVIYSS  372 (415)
T ss_dssp             CTTSSEEEEEE
T ss_pred             cCCCCEEEEEE
Confidence            99999887654

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=98.36  E-value=6.9e-05  Score=63.66  Aligned_cols=138  Identities=17%  Similarity=0.180  Sum_probs=94.6

Q ss_pred             CCcceEEEcCCCCEE-EEeCCCeEEEEec-CCcE-EEeeeccCcCccCeEEcCCCCEEEEeCCCCeEEEc--cCC-ceEE
Q 026389           77 NGPEDVCVDRNGVLY-TATRDGWIKRLHK-NGTW-ENWKLIGGDTLLGITTTQENEILVCDADKGLLKVT--EEG-VTVL  150 (239)
Q Consensus        77 ~gPe~ia~d~~G~ly-~~~~~g~I~~~~~-~G~~-~~~~~~~~~p~~Gl~~d~~G~L~v~d~~~g~~~v~--~~g-~~~l  150 (239)
                      ..-.++++.+++.+. +++.|+.|..||. +|+. ..+........ .+++.++|+.+++....+.+++.  ..+ ....
T Consensus        81 ~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~~~~-~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~  159 (321)
T 3ow8_A           81 LGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAW-TLAFSPDSQYLATGTHVGKVNIFGVESGKKEYS  159 (321)
T ss_dssp             SCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCCC-CEEECTTSSEEEEECTTSEEEEEETTTCSEEEE
T ss_pred             CCEEEEEECCCCCEEEEEeCCCcEEEEECCCCCEEEEEeCCCccEE-EEEECCCCCEEEEEcCCCcEEEEEcCCCceeEE
Confidence            345578888887655 6669999999996 4443 33333344566 89999999988887777777765  344 2221


Q ss_pred             ecccCCccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecCCC-CCcceEEEcCCC
Q 026389          151 ASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSL-FFANGVALSKDE  229 (239)
Q Consensus       151 ~~~~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~~l-~~pnGia~s~dg  229 (239)
                      ... .+   .....+++.++|+.+++-..                 .|.|..||..+++......+. ...+.++|+||+
T Consensus       160 ~~~-~~---~~v~~~~~spdg~~lasg~~-----------------dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~  218 (321)
T 3ow8_A          160 LDT-RG---KFILSIAYSPDGKYLASGAI-----------------DGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDS  218 (321)
T ss_dssp             EEC-SS---SCEEEEEECTTSSEEEEEET-----------------TSCEEEEETTTTEEEEEECCCSSCCCEEEECTTS
T ss_pred             ecC-CC---ceEEEEEECCCCCEEEEEcC-----------------CCeEEEEECCCCcEEEEEcccCCceeEEEEcCCC
Confidence            111 11   24678999999987776543                 578999999888765544433 345899999999


Q ss_pred             CEEEEEe
Q 026389          230 DYLVVCE  236 (239)
Q Consensus       230 ~~lyvad  236 (239)
                      ++|+.+.
T Consensus       219 ~~l~s~s  225 (321)
T 3ow8_A          219 QLLVTAS  225 (321)
T ss_dssp             CEEEEEC
T ss_pred             CEEEEEc
Confidence            9877653

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=98.36  E-value=4.6e-06  Score=73.77  Aligned_cols=124  Identities=15%  Similarity=0.108  Sum_probs=83.8

Q ss_pred             EEEc-CCCCEEEEeCCCeEEEEecCCc-EEE---ee---e----ccCcCc--cCeEEcCCC-CEEEEeCC----------
Q 026389           82 VCVD-RNGVLYTATRDGWIKRLHKNGT-WEN---WK---L----IGGDTL--LGITTTQEN-EILVCDAD----------  136 (239)
Q Consensus        82 ia~d-~~G~ly~~~~~g~I~~~~~~G~-~~~---~~---~----~~~~p~--~Gl~~d~~G-~L~v~d~~----------  136 (239)
                      .+++ ++|++|+.+.+|+|+.+|..+. .+.   +.   .    .+-+|-  ..+++++++ +|||+...          
T Consensus       231 ~~~~~~dG~~~~vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~  310 (386)
T 3sjl_D          231 PAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTAS  310 (386)
T ss_dssp             CEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCE
T ss_pred             ceeEcCCCcEEEEeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCC
Confidence            3665 5887766666899999987543 111   11   0    112233  037778766 79998631          


Q ss_pred             CCeEEEc-cCC--ceEEecccCCccccccccEEEcCCCC--EEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEE
Q 026389          137 KGLLKVT-EEG--VTVLASHVNGSRINLADDLIAATDGS--IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETS  211 (239)
Q Consensus       137 ~g~~~v~-~~g--~~~l~~~~~g~~~~~pn~l~vd~dG~--iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~  211 (239)
                      ..+..+| ..+  ++.+.-   |   ..+++|++++||+  +|+++..                 .+.|..||..++++.
T Consensus       311 ~~V~viD~~t~kv~~~i~v---g---~~~~~lavs~D~~~~ly~tn~~-----------------~~~VsViD~~t~k~~  367 (386)
T 3sjl_D          311 RFVVVLDAKTGERLAKFEM---G---HEIDSINVSQDEKPLLYALSTG-----------------DKTLYIHDAESGEEL  367 (386)
T ss_dssp             EEEEEEETTTCCEEEEEEE---E---EEECEEEECSSSSCEEEEEETT-----------------TTEEEEEETTTCCEE
T ss_pred             CEEEEEECCCCeEEEEEEC---C---CCcceEEECCCCCeEEEEEcCC-----------------CCeEEEEECCCCcEE
Confidence            2356667 444  222211   1   2588999999995  6777753                 588999999999988


Q ss_pred             EecCCCCCcceEEEcCC
Q 026389          212 ILLDSLFFANGVALSKD  228 (239)
Q Consensus       212 ~~~~~l~~pnGia~s~d  228 (239)
                      .-+....+||.|++++|
T Consensus       368 ~~i~~~~~p~~l~~s~d  384 (386)
T 3sjl_D          368 RSVNQLGHGPQVITTAD  384 (386)
T ss_dssp             EEECCCCSSCCEEEECC
T ss_pred             EEecCCCCCceeEECCc
Confidence            88888899999999998

>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*

Probab=98.36  E-value=1.2e-05  Score=70.92  Aligned_cols=141  Identities=9%  Similarity=0.056  Sum_probs=89.6

Q ss_pred             CCcceEEEc-CCCCEEEEeCC------CeEEEEec---------CCcE-EEeee-----ccCcCccCeEEcCCCCEEEEe
Q 026389           77 NGPEDVCVD-RNGVLYTATRD------GWIKRLHK---------NGTW-ENWKL-----IGGDTLLGITTTQENEILVCD  134 (239)
Q Consensus        77 ~gPe~ia~d-~~G~ly~~~~~------g~I~~~~~---------~G~~-~~~~~-----~~~~p~~Gl~~d~~G~L~v~d  134 (239)
                      .-|.||++| .+|++|++...      -++-.++.         +++. +.+..     ..-..+ ++.+|+.|+|||.|
T Consensus        26 ~~P~gv~vd~~~gRiFvt~PR~~~gvp~TL~~v~~~~~~~~~~~~p~ll~PYP~w~~~~~lvsV~-~v~iD~~~rLWVLD  104 (381)
T 3q6k_A           26 MISTAFAYDAEGEKLFLAVPRKLPRVPYTLAEVDTKNSLGVKGKHSPLLNKFSGHKTGKELTSIY-QPVIDDCRRLWVVD  104 (381)
T ss_dssp             CCCCEEEEETTTTEEEEECCTTSTTCSCSEEEEEHHHHTTCTTCSSCCBEECTTCSSSCSSSCEE-EEEECTTCEEEEEE
T ss_pred             cceeeeeeecCCCcEEEEeCCCCCCCCcEEEEEeCCCCcccccCCcccccCCCCCccccceEEee-EEEEcCCCcEEEEe
Confidence            468899995 89999998732      25555653         1234 44322     112356 89999999999999


Q ss_pred             CCC----------------CeEEEc-c-C--C-ceEE-ec-ccCCccccccccEEEc-C-------CCCEEEEeCCCCcC
Q 026389          135 ADK----------------GLLKVT-E-E--G-VTVL-AS-HVNGSRINLADDLIAA-T-------DGSIYFSVASTKFG  183 (239)
Q Consensus       135 ~~~----------------g~~~v~-~-~--g-~~~l-~~-~~~g~~~~~pn~l~vd-~-------dG~iy~td~~~~~~  183 (239)
                      .+.                .++.+| . +  . ++.+ .. ..- .+-.+.|+++|| .       ++.+|+||+.    
T Consensus       105 tG~~~~~~~~~~~~~~~~pkLv~~DL~t~~~~li~~y~~p~~~~-~~~S~l~di~VD~~~~~~~c~~~~aYItD~~----  179 (381)
T 3q6k_A          105 IGSVEYRSRGAKDYPSHRPAIVAYDLKQPNYPEVVRYYFPTRLV-EKPTYFGGFAVDVANPKGDCSETFVYITNFL----  179 (381)
T ss_dssp             CSSCSSCSTTGGGSCCCCCEEEEEESSSTTCCEEEEEECCGGGC-CCGGGEEEEEEEESCTTTTSCSEEEEEEETT----
T ss_pred             CCCcCcCCCccccCCCCCceEEEEECCCCCceeEEEEECCHHhc-ccCCccceEEEecccCCCCCCccEEEEEcCC----
Confidence            762                145566 2 4  3 2222 11 111 123678999999 2       4689999986    


Q ss_pred             cccccccceeecCCceEEEEeCCCCeEEEecC--------------C-----CCCcceEEEcCC----CCEEEEEe
Q 026389          184 LHNWGLDLLEAKPHGKLLKYDPSLNETSILLD--------------S-----LFFANGVALSKD----EDYLVVCE  236 (239)
Q Consensus       184 ~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~--------------~-----l~~pnGia~s~d----g~~lyvad  236 (239)
                                   .+.|.+||..+++...+..              +     .-..+|||+||+    +++||+.-
T Consensus       180 -------------~~gLIVydl~~~~swRv~~~~~~pd~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~p  242 (381)
T 3q6k_A          180 -------------RGALFIYDHKKQDSWNVTHPTFKAERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLA  242 (381)
T ss_dssp             -------------TTEEEEEETTTTEEEEEECGGGSCCSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEE
T ss_pred             -------------CCcEEEEECCCCcEEEEccCCCccccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEE
Confidence                         3456667766655444332              1     125689999998    89999864

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=98.33  E-value=2e-05  Score=74.01  Aligned_cols=137  Identities=12%  Similarity=0.018  Sum_probs=86.2

Q ss_pred             CCcceEEEcCCCC-EEEEeC-CC-----eEEEEecC-CcEEEeeeccC-------------------------cCccCeE
Q 026389           77 NGPEDVCVDRNGV-LYTATR-DG-----WIKRLHKN-GTWENWKLIGG-------------------------DTLLGIT  123 (239)
Q Consensus        77 ~gPe~ia~d~~G~-ly~~~~-~g-----~I~~~~~~-G~~~~~~~~~~-------------------------~p~~Gl~  123 (239)
                      ..+.+++|++||+ |++++. ++     .|+.++.+ |+.........                         ... .++
T Consensus        37 ~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~  115 (741)
T 2ecf_A           37 PTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIV-DYQ  115 (741)
T ss_dssp             CCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESC-CCE
T ss_pred             CCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcc-eeE
Confidence            4577889999997 556665 77     89999964 55443332211                         145 899


Q ss_pred             EcCCCCEEEEeCCCCeEEEc-cCCc--eEEecccCCccccccccEEEcCCCC-EEEEeCCCCcCcccccccceeecCCce
Q 026389          124 TTQENEILVCDADKGLLKVT-EEGV--TVLASHVNGSRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGK  199 (239)
Q Consensus       124 ~d~~G~L~v~d~~~g~~~v~-~~g~--~~l~~~~~g~~~~~pn~l~vd~dG~-iy~td~~~~~~~~~~~~~~~e~~~~g~  199 (239)
                      +.+||+.++......++.++ .++.  +.. .....  -.....++++|||+ |+++.                   .+.
T Consensus       116 ~SpDg~~l~~~~~~~i~~~d~~~~~~~~~~-~l~~~--~~~~~~~~~SPDG~~la~~~-------------------~~~  173 (741)
T 2ecf_A          116 WSPDAQRLLFPLGGELYLYDLKQEGKAAVR-QLTHG--EGFATDAKLSPKGGFVSFIR-------------------GRN  173 (741)
T ss_dssp             ECTTSSEEEEEETTEEEEEESSSCSTTSCC-BCCCS--SSCEEEEEECTTSSEEEEEE-------------------TTE
T ss_pred             ECCCCCEEEEEeCCcEEEEECCCCCcceEE-EcccC--CcccccccCCCCCCEEEEEe-------------------CCc
Confidence            99999744433333444445 3321  111 00011  12367899999996 55554                   247


Q ss_pred             EEEEeCCCCeEEEecCCCCC-----------------cceEEEcCCCCEEEEEe
Q 026389          200 LLKYDPSLNETSILLDSLFF-----------------ANGVALSKDEDYLVVCE  236 (239)
Q Consensus       200 v~~~d~~~~~~~~~~~~l~~-----------------pnGia~s~dg~~lyvad  236 (239)
                      |+.+|.++++...+......                 +.+++|||||++|+++.
T Consensus       174 i~~~d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~  227 (741)
T 2ecf_A          174 LWVIDLASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYAR  227 (741)
T ss_dssp             EEEEETTTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEE
T ss_pred             EEEEecCCCCEEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEE
Confidence            99999988887766543222                 57899999999887763

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=98.32  E-value=1.7e-05  Score=64.65  Aligned_cols=129  Identities=10%  Similarity=0.022  Sum_probs=80.3

Q ss_pred             CCEEEEe---CCCeEEEEecC-CcEEEeeeccCcCccCeEEcCCCCEEEEeCCCCeEEEc-cC-C-ceEEecccCCcccc
Q 026389           88 GVLYTAT---RDGWIKRLHKN-GTWENWKLIGGDTLLGITTTQENEILVCDADKGLLKVT-EE-G-VTVLASHVNGSRIN  160 (239)
Q Consensus        88 G~ly~~~---~~g~I~~~~~~-G~~~~~~~~~~~p~~Gl~~d~~G~L~v~d~~~g~~~v~-~~-g-~~~l~~~~~g~~~~  160 (239)
                      |.+|...   .++.|+.++.+ ++...+........ .+++.++|+.+++.....++.++ .. + ...+..   +....
T Consensus        10 ~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~v~-~~~~spdg~~l~~~~~~~i~~~d~~~~~~~~~~~~---~~~~~   85 (297)
T 2ojh_A           10 TRLSTGPGGSMRSSIEIFNIRTRKMRVVWQTPELFE-APNWSPDGKYLLLNSEGLLYRLSLAGDPSPEKVDT---GFATI   85 (297)
T ss_dssp             --------CCCCEEEEEEETTTTEEEEEEEESSCCE-EEEECTTSSEEEEEETTEEEEEESSSCCSCEECCC---TTCCC
T ss_pred             eeEeecCCCCcceeEEEEeCCCCceeeeccCCcceE-eeEECCCCCEEEEEcCCeEEEEeCCCCCCceEecc---ccccc
Confidence            4555433   56789999864 45555555556677 89999999866665544555556 45 6 444332   11123


Q ss_pred             ccccEEEcCCCCE-EEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecCCCCCcceEEEcCCCCEEEEE
Q 026389          161 LADDLIAATDGSI-YFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVC  235 (239)
Q Consensus       161 ~pn~l~vd~dG~i-y~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~~l~~pnGia~s~dg~~lyva  235 (239)
                      ...++++++||+. +++....              ....+|+.++.++++.+.+... ...+.++++|||+.|+++
T Consensus        86 ~~~~~~~spdg~~l~~~~~~~--------------~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~spdg~~l~~~  146 (297)
T 2ojh_A           86 CNNDHGISPDGALYAISDKVE--------------FGKSAIYLLPSTGGTPRLMTKN-LPSYWHGWSPDGKSFTYC  146 (297)
T ss_dssp             BCSCCEECTTSSEEEEEECTT--------------TSSCEEEEEETTCCCCEECCSS-SSEEEEEECTTSSEEEEE
T ss_pred             cccceEECCCCCEEEEEEeCC--------------CCcceEEEEECCCCceEEeecC-CCccceEECCCCCEEEEE
Confidence            5678999999964 4444220              1247899999887776555433 347888999999988754

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=98.31  E-value=0.00013  Score=60.99  Aligned_cols=137  Identities=17%  Similarity=0.159  Sum_probs=93.1

Q ss_pred             CCcceEEEcCCCCEE-EEeCCCeEEEEec-CCcEE-EeeeccCcCccCeEEcCCCCEEEEeCCCCeEEEc--cCC--ceE
Q 026389           77 NGPEDVCVDRNGVLY-TATRDGWIKRLHK-NGTWE-NWKLIGGDTLLGITTTQENEILVCDADKGLLKVT--EEG--VTV  149 (239)
Q Consensus        77 ~gPe~ia~d~~G~ly-~~~~~g~I~~~~~-~G~~~-~~~~~~~~p~~Gl~~d~~G~L~v~d~~~g~~~v~--~~g--~~~  149 (239)
                      ..-.+++|+++|..+ +++.+|.|..|+. +++.. .+........ .+++.++|+++++-...+.+++.  .++  ...
T Consensus        24 ~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~-~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~  102 (312)
T 4ery_A           24 KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGIS-DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKT  102 (312)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEE-EEEECTTSSEEEEEETTSEEEEEETTTCCEEEE
T ss_pred             CcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceE-EEEEcCCCCEEEEECCCCEEEEEECCCCcEEEE
Confidence            456788999988755 6679999999986 45543 2222333445 88999999877776667777775  344  333


Q ss_pred             EecccCCccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecCC-CCCcceEEEcCC
Q 026389          150 LASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDS-LFFANGVALSKD  228 (239)
Q Consensus       150 l~~~~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~~-l~~pnGia~s~d  228 (239)
                      +...     -.....+++.++|+++++...                 .|.|..||..+++....... -.....++++++
T Consensus       103 ~~~~-----~~~v~~~~~~~~~~~l~s~~~-----------------d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~  160 (312)
T 4ery_A          103 LKGH-----SNYVFCCNFNPQSNLIVSGSF-----------------DESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRD  160 (312)
T ss_dssp             EECC-----SSCEEEEEECSSSSEEEEEET-----------------TSCEEEEETTTCCEEEEECCCSSCEEEEEECTT
T ss_pred             EcCC-----CCCEEEEEEcCCCCEEEEEeC-----------------CCcEEEEECCCCEEEEEecCCCCcEEEEEEcCC
Confidence            3211     123578899999987776544                 57899999887765444332 334578999999


Q ss_pred             CCEEEEEe
Q 026389          229 EDYLVVCE  236 (239)
Q Consensus       229 g~~lyvad  236 (239)
                      +++|+.+.
T Consensus       161 ~~~l~~~~  168 (312)
T 4ery_A          161 GSLIVSSS  168 (312)
T ss_dssp             SSEEEEEE
T ss_pred             CCEEEEEe
Confidence            99877654

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=98.30  E-value=4.5e-05  Score=65.09  Aligned_cols=134  Identities=13%  Similarity=0.142  Sum_probs=91.8

Q ss_pred             ceEEEcCCCCEEEEeCCCeEEEEec-CCcE-EEeeeccCcCccCeEEcCCCCEEEEeCCCCeEEEc--cCC--ceEEecc
Q 026389           80 EDVCVDRNGVLYTATRDGWIKRLHK-NGTW-ENWKLIGGDTLLGITTTQENEILVCDADKGLLKVT--EEG--VTVLASH  153 (239)
Q Consensus        80 e~ia~d~~G~ly~~~~~g~I~~~~~-~G~~-~~~~~~~~~p~~Gl~~d~~G~L~v~d~~~g~~~v~--~~g--~~~l~~~  153 (239)
                      ..+++.+++.+++++.++.|..||. +++. ..+....+... .+++.++|+++++....+.+++.  .++  ...+...
T Consensus       147 ~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~-~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h  225 (340)
T 1got_B          147 SCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVM-SLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGH  225 (340)
T ss_dssp             EEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEE-EEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCC
T ss_pred             EEEEECCCCcEEEEECCCcEEEEECCCCcEEEEEcCCCCceE-EEEECCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCC
Confidence            4567777888888889999999996 4443 33333334556 89999999988887777777775  355  3333211


Q ss_pred             cCCccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecCC---CCCcceEEEcCCCC
Q 026389          154 VNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDS---LFFANGVALSKDED  230 (239)
Q Consensus       154 ~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~~---l~~pnGia~s~dg~  230 (239)
                           -...+.+++.|+|+.+++.+.                 .|.|..||..+++.......   ......++|+|||+
T Consensus       226 -----~~~v~~v~~~p~~~~l~s~s~-----------------d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~  283 (340)
T 1got_B          226 -----ESDINAICFFPNGNAFATGSD-----------------DATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGR  283 (340)
T ss_dssp             -----SSCEEEEEECTTSSEEEEEET-----------------TSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSS
T ss_pred             -----cCCEEEEEEcCCCCEEEEEcC-----------------CCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCC
Confidence                 124688999999988777654                 57899999876654333221   22457789999999


Q ss_pred             EEEEEe
Q 026389          231 YLVVCE  236 (239)
Q Consensus       231 ~lyvad  236 (239)
                      +|+.+.
T Consensus       284 ~l~~g~  289 (340)
T 1got_B          284 LLLAGY  289 (340)
T ss_dssp             EEEEEE
T ss_pred             EEEEEC
Confidence            877654

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=98.28  E-value=2.9e-05  Score=69.79  Aligned_cols=145  Identities=13%  Similarity=0.078  Sum_probs=83.5

Q ss_pred             cCCcceEEEcCCCCEEEEe-CC------CeEEEEecC-CcE-EEeeec---cCcCccCeEEcCCCCEEEE-eC-------
Q 026389           76 LNGPEDVCVDRNGVLYTAT-RD------GWIKRLHKN-GTW-ENWKLI---GGDTLLGITTTQENEILVC-DA-------  135 (239)
Q Consensus        76 ~~gPe~ia~d~~G~ly~~~-~~------g~I~~~~~~-G~~-~~~~~~---~~~p~~Gl~~d~~G~L~v~-d~-------  135 (239)
                      ...|.++...++| ||++. .+      |.|..+|.. +++ .+|...   .+.++ ++.+.++++.+++ +.       
T Consensus       137 ~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Y-d~~~~p~~~~mvsS~wg~p~~~~  214 (462)
T 2ece_A          137 YSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDHYSFEPLGKWEIDRGDQYLAY-DFWWNLPNEVLVSSEWAVPNTIE  214 (462)
T ss_dssp             EEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECTTTCCEEEECCSBCTTCCCCC-CEEEETTTTEEEECBCCCHHHHT
T ss_pred             CCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEECCCCeEEEEEccCCCCccccc-eEEECCCCCEEEEccCcCccccc
Confidence            3479999999999 88764 33      789999964 554 344321   13345 5777888875554 42       


Q ss_pred             -----------CCCeEEE-c-cCC--ceEEecccCCccccccccEEE--cCCC-CEEEEeC-CCCcCcccccccceeecC
Q 026389          136 -----------DKGLLKV-T-EEG--VTVLASHVNGSRINLADDLIA--ATDG-SIYFSVA-STKFGLHNWGLDLLEAKP  196 (239)
Q Consensus       136 -----------~~g~~~v-~-~~g--~~~l~~~~~g~~~~~pn~l~v--d~dG-~iy~td~-~~~~~~~~~~~~~~e~~~  196 (239)
                                 +.+.+.+ + ..+  ...+.   -|..-..|.++.+  +|+| .+|++.. +.+.             -
T Consensus       215 ~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~---vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~-------------L  278 (462)
T 2ece_A          215 DGLKLEHLKDRYGNRIHFWDLRKRKRIHSLT---LGEENRMALELRPLHDPTKLMGFINMVVSLKD-------------L  278 (462)
T ss_dssp             TCCCTTTHHHHSCCEEEEEETTTTEEEEEEE---SCTTEEEEEEEEECSSTTCCEEEEEEEEETTT-------------C
T ss_pred             cccchhhhhhccCCEEEEEECCCCcEeeEEe---cCCCCCccceeEeeECCCCCEEEEEEeeeccC-------------C
Confidence                       2344444 4 344  22221   1211235777777  9998 5788764 0000             0


Q ss_pred             CceEEEEeCCCCeEEEe-----cC-----C-----------CCCcceEEEcCCCCEEEEEeCC
Q 026389          197 HGKLLKYDPSLNETSIL-----LD-----S-----------LFFANGVALSKDEDYLVVCETF  238 (239)
Q Consensus       197 ~g~v~~~d~~~~~~~~~-----~~-----~-----------l~~pnGia~s~dg~~lyvadt~  238 (239)
                      ++.|++|..+.++.+..     ..     .           ...|.+|.+|+||++|||++.+
T Consensus       279 ss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg  341 (462)
T 2ece_A          279 SSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWG  341 (462)
T ss_dssp             CEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETT
T ss_pred             CceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCC
Confidence            24454433222322111     11     0           2468999999999999999865

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=98.27  E-value=1.6e-05  Score=71.95  Aligned_cols=59  Identities=19%  Similarity=0.125  Sum_probs=45.8

Q ss_pred             cCCcceEEEcCCCCEEEEeC------------------CCeEEEEecCCc---------------------EEEeeeccC
Q 026389           76 LNGPEDVCVDRNGVLYTATR------------------DGWIKRLHKNGT---------------------WENWKLIGG  116 (239)
Q Consensus        76 ~~gPe~ia~d~~G~ly~~~~------------------~g~I~~~~~~G~---------------------~~~~~~~~~  116 (239)
                      -.....|+|++||.||++..                  .|+|+|++++|+                     .+.|+....
T Consensus       138 ~H~g~~l~fgpDG~LYv~~Gd~~~~~~~~~~~q~~~~~~GkIlRi~~dg~~~~~~y~iP~dNPf~~~~~~~~eI~a~G~R  217 (463)
T 2wg3_C          138 KHLGGQLLFGPDGFLYIILGDGMITLDDMEEMDGLSDFTGSVLRLDVDTDMCNVPYSIPRSNPHFNSTNQPPEVFAHGLH  217 (463)
T ss_dssp             SSCEEEEEECTTSCEEEEECCTTCCHHHHHHCTTCCSCTTEEEEEBCCCCCSSCSCBCCTTSTTTTCSSSCTTEEEECCS
T ss_pred             cccCCcEeECCCCcEEEEeCCCCCCCCccccccCcCCCCeeEEEEECCCCcccccCcCCCCCCCcCCCCCcccEEEECCC
Confidence            35566799999999997641                  378999999883                     356777778


Q ss_pred             cCccCeEEcCC-----C--CEEEEeC
Q 026389          117 DTLLGITTTQE-----N--EILVCDA  135 (239)
Q Consensus       117 ~p~~Gl~~d~~-----G--~L~v~d~  135 (239)
                      .|. ||+||++     |  .+|++|.
T Consensus       218 Np~-gla~dp~tg~~~G~l~~~~~D~  242 (463)
T 2wg3_C          218 DPG-RCAVDRHPTDININLTILCSDS  242 (463)
T ss_dssp             SCC-BEEEESSCSSTTCSEEEEEECC
T ss_pred             Ccc-eEEECCCCCCcccceEEEeccc
Confidence            899 9999986     5  4666775

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=98.25  E-value=7.8e-06  Score=66.76  Aligned_cols=111  Identities=14%  Similarity=0.081  Sum_probs=72.4

Q ss_pred             cccceEeccCCcCCcceEEEcCCCCEEEEeCCCeEEEEec-CCcE-------EEeeeccCcCccCeEEcCCCCEEEEeCC
Q 026389           65 IQSVTRLGEGILNGPEDVCVDRNGVLYTATRDGWIKRLHK-NGTW-------ENWKLIGGDTLLGITTTQENEILVCDAD  136 (239)
Q Consensus        65 l~~~~~l~~g~~~gPe~ia~d~~G~ly~~~~~g~I~~~~~-~G~~-------~~~~~~~~~p~~Gl~~d~~G~L~v~d~~  136 (239)
                      +.++.++..+....-++++++|+|.||.. .+|.++++++ +++-       +.+...+-.-...+.||++|.||+. ..
T Consensus        29 ~~~a~~iG~~gw~~~~~laf~P~G~LYaV-~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~~G~LYav-~d  106 (236)
T 1tl2_A           29 LARATLIGKGGWSNFKFLFLSPGGELYGV-LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDPNGYLYAV-SK  106 (236)
T ss_dssp             HHHSEEEESSSCTTCSEEEECTTSCEEEE-ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECTTSCEEEE-ET
T ss_pred             hhhccccCccccccceeEEECCCccEEEE-eCCeEEEECCCCCCcccccccccEecccccccceEEEECCCCCEEEe-CC
Confidence            35678888865778889999999999977 8999999996 3221       1211111111216889999999999 44


Q ss_pred             CCeEEEcc--CC-ceEEec--ccCCccccccccEEEcCCCCEEEEe
Q 026389          137 KGLLKVTE--EG-VTVLAS--HVNGSRINLADDLIAATDGSIYFSV  177 (239)
Q Consensus       137 ~g~~~v~~--~g-~~~l~~--~~~g~~~~~pn~l~vd~dG~iy~td  177 (239)
                      ..++++++  ++ ..++..  .+.....+...-|.++|+|.||...
T Consensus       107 G~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~  152 (236)
T 1tl2_A          107 DKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH  152 (236)
T ss_dssp             TEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE
T ss_pred             CEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe
Confidence            55667873  44 333222  1111112334789999999999877

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=98.24  E-value=5.5e-05  Score=65.74  Aligned_cols=142  Identities=13%  Similarity=0.101  Sum_probs=91.0

Q ss_pred             CCcceEEEcCCC-C-EEEEeCCCeEEEEecC-CcEE-Ee--eeccCcCccCeEEcCCCCEEEEeCCCCeEEEc--cCC--
Q 026389           77 NGPEDVCVDRNG-V-LYTATRDGWIKRLHKN-GTWE-NW--KLIGGDTLLGITTTQENEILVCDADKGLLKVT--EEG--  146 (239)
Q Consensus        77 ~gPe~ia~d~~G-~-ly~~~~~g~I~~~~~~-G~~~-~~--~~~~~~p~~Gl~~d~~G~L~v~d~~~g~~~v~--~~g--  146 (239)
                      ....+++|.++| + |++++.+|.|..|+.. ++.. .+  ........ .++++++|+++++-...+.+++.  ..+  
T Consensus       132 ~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~  210 (402)
T 2aq5_A          132 KRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIY-SVDWSRDGALICTSCRDKRVRVIEPRKGTV  210 (402)
T ss_dssp             SCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEE-EEEECTTSSCEEEEETTSEEEEEETTTTEE
T ss_pred             CeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceE-EEEECCCCCEEEEEecCCcEEEEeCCCCce
Confidence            456679999987 4 4567799999999964 4432 32  12234455 89999999766665556777665  355  


Q ss_pred             ceEEecccCCccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeE---EEecCCCCCcceE
Q 026389          147 VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNET---SILLDSLFFANGV  223 (239)
Q Consensus       147 ~~~l~~~~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~---~~~~~~l~~pnGi  223 (239)
                      ...+.....+   ..+..+++.++|+++++..+.              ...+.|..||..+++.   ......-.....+
T Consensus       211 ~~~~~~~~~~---~~~~~~~~~~~~~~l~~g~~~--------------~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~  273 (402)
T 2aq5_A          211 VAEKDRPHEG---TRPVHAVFVSEGKILTTGFSR--------------MSERQVALWDTKHLEEPLSLQELDTSSGVLLP  273 (402)
T ss_dssp             EEEEECSSCS---SSCCEEEECSTTEEEEEEECT--------------TCCEEEEEEETTBCSSCSEEEECCCCSSCEEE
T ss_pred             eeeeccCCCC---CcceEEEEcCCCcEEEEeccC--------------CCCceEEEEcCccccCCceEEeccCCCceeEE
Confidence            2222111112   236789999999877765210              0157899999876442   2222344567889


Q ss_pred             EEcCCCCEEEEEe
Q 026389          224 ALSKDEDYLVVCE  236 (239)
Q Consensus       224 a~s~dg~~lyvad  236 (239)
                      ++++|++.|+++-
T Consensus       274 ~~s~~~~~l~~~g  286 (402)
T 2aq5_A          274 FFDPDTNIVYLCG  286 (402)
T ss_dssp             EEETTTTEEEEEE
T ss_pred             EEcCCCCEEEEEE
Confidence            9999999998764

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=98.24  E-value=0.00015  Score=62.83  Aligned_cols=139  Identities=15%  Similarity=0.210  Sum_probs=93.6

Q ss_pred             cceEEEcC-CCCEE-EEeCCCeEEEEecC--Cc-EEEeeeccCcCccCeEEcCCCCEEEEeCCCCeEEEc--cCC--ceE
Q 026389           79 PEDVCVDR-NGVLY-TATRDGWIKRLHKN--GT-WENWKLIGGDTLLGITTTQENEILVCDADKGLLKVT--EEG--VTV  149 (239)
Q Consensus        79 Pe~ia~d~-~G~ly-~~~~~g~I~~~~~~--G~-~~~~~~~~~~p~~Gl~~d~~G~L~v~d~~~g~~~v~--~~g--~~~  149 (239)
                      -.++++.+ +++++ +++.|+.|..||..  ++ ...+....+... .+++.++|+.+++-...+.+++.  ..+  ...
T Consensus       208 v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~-~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~  286 (380)
T 3iz6_a          208 VLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDIN-SVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQV  286 (380)
T ss_dssp             EEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCC-EEEECTTSSEEEEECSSSCEEEEETTTTEEEEE
T ss_pred             eEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeE-EEEEecCCCeEEEEcCCCeEEEEECCCCcEEEE
Confidence            34567765 66655 66799999999853  22 344444445567 89999999988888778888876  455  333


Q ss_pred             Eeccc--CCccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecC-----CCCCcce
Q 026389          150 LASHV--NGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLD-----SLFFANG  222 (239)
Q Consensus       150 l~~~~--~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~-----~l~~pnG  222 (239)
                      +....  ..........+++.++|++.++...                 .|.|+.||..+++......     .-...+.
T Consensus       287 ~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~-----------------dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~  349 (380)
T 3iz6_a          287 YNREPDRNDNELPIVTSVAFSISGRLLFAGYS-----------------NGDCYVWDTLLAEMVLNLGTLQNSHEGRISC  349 (380)
T ss_dssp             ECCCCSSSCCSSCSCSEEEECSSSSEEEEECT-----------------TSCEEEEETTTCCEEEEECCSCSSCCCCCCE
T ss_pred             ecccccccccccCceEEEEECCCCCEEEEEEC-----------------CCCEEEEECCCCceEEEEecccCCCCCceEE
Confidence            32211  1112234678999999988887655                 5889999987666543331     2334688


Q ss_pred             EEEcCCCCEEEEE
Q 026389          223 VALSKDEDYLVVC  235 (239)
Q Consensus       223 ia~s~dg~~lyva  235 (239)
                      ++|+|||++|+.+
T Consensus       350 l~~s~dg~~l~sg  362 (380)
T 3iz6_a          350 LGLSSDGSALCTG  362 (380)
T ss_dssp             EEECSSSSEEEEE
T ss_pred             EEECCCCCEEEEe
Confidence            9999999987654

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=98.24  E-value=8.7e-05  Score=64.45  Aligned_cols=136  Identities=10%  Similarity=0.008  Sum_probs=90.5

Q ss_pred             CcceEEEcC-CCCEE-EEeCCCeEEEEecC-C-------c-EEEeeeccCcCccCeEEcCCC-CEEEEeCCCCeEEEc--
Q 026389           78 GPEDVCVDR-NGVLY-TATRDGWIKRLHKN-G-------T-WENWKLIGGDTLLGITTTQEN-EILVCDADKGLLKVT--  143 (239)
Q Consensus        78 gPe~ia~d~-~G~ly-~~~~~g~I~~~~~~-G-------~-~~~~~~~~~~p~~Gl~~d~~G-~L~v~d~~~g~~~v~--  143 (239)
                      .-.+++|++ ++.++ +++.||.|..|+.. +       + ...+........ .+++.++| +++++-...+.+++.  
T Consensus        83 ~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~-~~~~~p~~~~~l~s~~~dg~i~iwd~  161 (402)
T 2aq5_A           83 PVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVG-IVAWHPTAQNVLLSAGCDNVILVWDV  161 (402)
T ss_dssp             CEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEE-EEEECSSBTTEEEEEETTSCEEEEET
T ss_pred             CEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEE-EEEECcCCCCEEEEEcCCCEEEEEEC
Confidence            456799998 77655 66799999999853 3       1 233333445566 89999998 576665556666664  


Q ss_pred             cCC--ceEEe-cccCCccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEec-CCC--
Q 026389          144 EEG--VTVLA-SHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILL-DSL--  217 (239)
Q Consensus       144 ~~g--~~~l~-~~~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~-~~l--  217 (239)
                      .++  ...+. ....    .....+++.++|..+++...                 .|.|..||..+++..... ...  
T Consensus       162 ~~~~~~~~~~~~~~~----~~v~~~~~~~~~~~l~~~~~-----------------d~~i~iwd~~~~~~~~~~~~~~~~  220 (402)
T 2aq5_A          162 GTGAAVLTLGPDVHP----DTIYSVDWSRDGALICTSCR-----------------DKRVRVIEPRKGTVVAEKDRPHEG  220 (402)
T ss_dssp             TTTEEEEEECTTTCC----SCEEEEEECTTSSCEEEEET-----------------TSEEEEEETTTTEEEEEEECSSCS
T ss_pred             CCCCccEEEecCCCC----CceEEEEECCCCCEEEEEec-----------------CCcEEEEeCCCCceeeeeccCCCC
Confidence            455  23331 1111    24678999999976665443                 488999999877765443 332  


Q ss_pred             CCcceEEEcCCCCEEEEE
Q 026389          218 FFANGVALSKDEDYLVVC  235 (239)
Q Consensus       218 ~~pnGia~s~dg~~lyva  235 (239)
                      ..+..+++++|+++|++.
T Consensus       221 ~~~~~~~~~~~~~~l~~g  238 (402)
T 2aq5_A          221 TRPVHAVFVSEGKILTTG  238 (402)
T ss_dssp             SSCCEEEECSTTEEEEEE
T ss_pred             CcceEEEEcCCCcEEEEe
Confidence            236889999999877765

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=98.23  E-value=4.1e-05  Score=66.37  Aligned_cols=138  Identities=16%  Similarity=0.230  Sum_probs=84.7

Q ss_pred             cceEEEcCCCCEEEEeCCCeEEEEec-CCcEEEeee---ccCcCccCeEEcCCCCEEEEeCC-C--Ce-EE-Ec-cCC-c
Q 026389           79 PEDVCVDRNGVLYTATRDGWIKRLHK-NGTWENWKL---IGGDTLLGITTTQENEILVCDAD-K--GL-LK-VT-EEG-V  147 (239)
Q Consensus        79 Pe~ia~d~~G~ly~~~~~g~I~~~~~-~G~~~~~~~---~~~~p~~Gl~~d~~G~L~v~d~~-~--g~-~~-v~-~~g-~  147 (239)
                      -.+++|+|+|.++++..++.+.+|+. +|+......   ...... .++|.++|+.+++-.. .  ++ ++ .+ ..+ .
T Consensus       179 V~~v~fspdg~~l~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~  257 (365)
T 4h5i_A          179 VKDLHFSTDGKVVAYITGSSLEVISTVTGSCIARKTDFDKNWSLS-KINFIADDTVLIAASLKKGKGIVLTKISIKSGNT  257 (365)
T ss_dssp             CCEEEECTTSSEEEEECSSCEEEEETTTCCEEEEECCCCTTEEEE-EEEEEETTEEEEEEEESSSCCEEEEEEEEETTEE
T ss_pred             eEEEEEccCCceEEeccceeEEEEEeccCcceeeeecCCCCCCEE-EEEEcCCCCEEEEEecCCcceeEEeeccccccee
Confidence            46899999999887666777777764 454322111   122344 7889999976554322 2  22 22 23 233 2


Q ss_pred             eEEe-cccCCccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEE-EecCC-CCCcceEE
Q 026389          148 TVLA-SHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETS-ILLDS-LFFANGVA  224 (239)
Q Consensus       148 ~~l~-~~~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~-~~~~~-l~~pnGia  224 (239)
                      .... ....+ .....+.+++.|||++.++-+.                 .|.|..||..+++.. .+..+ -...+.|+
T Consensus       258 ~~~~~~~~~~-~~~~V~~~~~Spdg~~lasgs~-----------------D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~  319 (365)
T 4h5i_A          258 SVLRSKQVTN-RFKGITSMDVDMKGELAVLASN-----------------DNSIALVKLKDLSMSKIFKQAHSFAITEVT  319 (365)
T ss_dssp             EEEEEEEEES-SCSCEEEEEECTTSCEEEEEET-----------------TSCEEEEETTTTEEEEEETTSSSSCEEEEE
T ss_pred             cceeeeeecC-CCCCeEeEEECCCCCceEEEcC-----------------CCEEEEEECCCCcEEEEecCcccCCEEEEE
Confidence            2211 11111 1134678999999988776544                 578999999887754 34443 34568999


Q ss_pred             EcCCCCEEEEE
Q 026389          225 LSKDEDYLVVC  235 (239)
Q Consensus       225 ~s~dg~~lyva  235 (239)
                      |+|||++|..+
T Consensus       320 fSpdg~~laS~  330 (365)
T 4h5i_A          320 ISPDSTYVASV  330 (365)
T ss_dssp             ECTTSCEEEEE
T ss_pred             ECCCCCEEEEE
Confidence            99999977543

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=98.23  E-value=2.1e-05  Score=72.91  Aligned_cols=130  Identities=11%  Similarity=-0.029  Sum_probs=87.7

Q ss_pred             cCCCCEEEEe-CCCeEEEEecC-CcEEEeeeccCcCccCeEEcCCCC-EEEEeCCCCeEEEccC-C-ceEEecccCCccc
Q 026389           85 DRNGVLYTAT-RDGWIKRLHKN-GTWENWKLIGGDTLLGITTTQENE-ILVCDADKGLLKVTEE-G-VTVLASHVNGSRI  159 (239)
Q Consensus        85 d~~G~ly~~~-~~g~I~~~~~~-G~~~~~~~~~~~p~~Gl~~d~~G~-L~v~d~~~g~~~v~~~-g-~~~l~~~~~g~~~  159 (239)
                      |+++.+|++. .+++|..||.+ +++......+..|+ ++++++||+ +||++....+..+|.. . .+++.....|   
T Consensus       164 d~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g~~p~-~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G---  239 (567)
T 1qks_A          164 DLENLFSVTLRDAGQIALIDGSTYEIKTVLDTGYAVH-ISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIG---  239 (567)
T ss_dssp             CGGGEEEEEETTTTEEEEEETTTCCEEEEEECSSCEE-EEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECC---
T ss_pred             CCCceEEEEeCCCCeEEEEECCCCeEEEEEeCCCCcc-ceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecC---
Confidence            3445788777 78999999974 55544445667899 999999995 8998865556666742 2 2333222223   


Q ss_pred             cccccEEEc----CCC-CEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecC--C----------CCCcce
Q 026389          160 NLADDLIAA----TDG-SIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLD--S----------LFFANG  222 (239)
Q Consensus       160 ~~pn~l~vd----~dG-~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~--~----------l~~pnG  222 (239)
                      ..|.+++++    ||| .+|+++..                 .+.|..+|..+.+....+.  +          -....+
T Consensus       240 ~~P~~ia~s~~~~pDGk~l~v~n~~-----------------~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~  302 (567)
T 1qks_A          240 SEARSIETSKMEGWEDKYAIAGAYW-----------------PPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAA  302 (567)
T ss_dssp             SEEEEEEECCSTTCTTTEEEEEEEE-----------------TTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEE
T ss_pred             CCCceeEEccccCCCCCEEEEEEcc-----------------CCeEEEEECCCCcEEEEEeccccccccccccCCCceEE
Confidence            358899999    699 68888743                 4788899988876644332  1          113457


Q ss_pred             EEEcCCCCEEEEE
Q 026389          223 VALSKDEDYLVVC  235 (239)
Q Consensus       223 ia~s~dg~~lyva  235 (239)
                      |..++++..++++
T Consensus       303 i~~s~~~~~~vv~  315 (567)
T 1qks_A          303 ILASHYRPEFIVN  315 (567)
T ss_dssp             EEECSSSSEEEEE
T ss_pred             EEEcCCCCEEEEE
Confidence            8888887766665

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=98.22  E-value=5.6e-05  Score=70.60  Aligned_cols=158  Identities=12%  Similarity=0.075  Sum_probs=92.9

Q ss_pred             CCcceEEEcCCCCEEEEeCCCeEEEEecC-CcEEEeeeccCcCccCeEEcCCCCEEEEeCCCCeEEEc-cC-----C-ce
Q 026389           77 NGPEDVCVDRNGVLYTATRDGWIKRLHKN-GTWENWKLIGGDTLLGITTTQENEILVCDADKGLLKVT-EE-----G-VT  148 (239)
Q Consensus        77 ~gPe~ia~d~~G~ly~~~~~g~I~~~~~~-G~~~~~~~~~~~p~~Gl~~d~~G~L~v~d~~~g~~~v~-~~-----g-~~  148 (239)
                      ....+++|++|+.+.++ .++.|+.++.+ |+...+........ .+++.+||+.++......++..+ .+     | ..
T Consensus        82 ~~v~~~~~spd~~~~~~-~~~~i~~~d~~~~~~~~l~~~~~~~~-~~~~SpdG~~la~~~~~~i~v~~~~~~~~~~g~~~  159 (706)
T 2z3z_A           82 FPSFRTLDAGRGLVVLF-TQGGLVGFDMLARKVTYLFDTNEETA-SLDFSPVGDRVAYVRNHNLYIARGGKLGEGMSRAI  159 (706)
T ss_dssp             CCCEEEEETTTTEEEEE-ETTEEEEEETTTTEEEEEECCTTCCT-TCEECTTSSEEEEEETTEEEEEECBCTTSCCCCCE
T ss_pred             cCceeEEECCCCeEEEE-ECCEEEEEECCCCceEEccCCccccc-CCcCCCCCCEEEEEECCeEEEEecCcccccCCCcE
Confidence            45778999999655554 46999999974 44444444445677 89999999744443334454555 45     6 43


Q ss_pred             EEecccCC----------ccccccccEEEcCCCC-EEEEeC--CCC--cCccccc--c-cc------e--eecCCceEEE
Q 026389          149 VLASHVNG----------SRINLADDLIAATDGS-IYFSVA--STK--FGLHNWG--L-DL------L--EAKPHGKLLK  202 (239)
Q Consensus       149 ~l~~~~~g----------~~~~~pn~l~vd~dG~-iy~td~--~~~--~~~~~~~--~-~~------~--e~~~~g~v~~  202 (239)
                      .+......          ..+..+.+++++|||+ |+++..  +..  +...+..  . ..      .  +.....+|+.
T Consensus       160 ~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~  239 (706)
T 2z3z_A          160 AVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGI  239 (706)
T ss_dssp             ESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEE
T ss_pred             EeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEE
Confidence            33221111          0122358999999995 555531  100  0000000  0 00      0  0123478999


Q ss_pred             EeCCCCeEEEecCC---CCCcceEEEcCCCCEEEEEe
Q 026389          203 YDPSLNETSILLDS---LFFANGVALSKDEDYLVVCE  236 (239)
Q Consensus       203 ~d~~~~~~~~~~~~---l~~pnGia~s~dg~~lyvad  236 (239)
                      +|.++++...+...   -..+..++|+|||++|+++.
T Consensus       240 ~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~  276 (706)
T 2z3z_A          240 YHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAE  276 (706)
T ss_dssp             EETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEE
T ss_pred             EECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEE
Confidence            99998887666532   23456899999999888754

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=98.21  E-value=1.3e-05  Score=73.53  Aligned_cols=138  Identities=9%  Similarity=0.022  Sum_probs=84.3

Q ss_pred             CcceEEEcCCCCEEEEeC---CC--eEEEEec--CCcEEEeeeccCcCccCeEEcCCC--CEEEEeCCCCeEEEc-cCC-
Q 026389           78 GPEDVCVDRNGVLYTATR---DG--WIKRLHK--NGTWENWKLIGGDTLLGITTTQEN--EILVCDADKGLLKVT-EEG-  146 (239)
Q Consensus        78 gPe~ia~d~~G~ly~~~~---~g--~I~~~~~--~G~~~~~~~~~~~p~~Gl~~d~~G--~L~v~d~~~g~~~v~-~~g-  146 (239)
                      ...+++|+||..+|+++.   +.  +|+.++.  +|+...+... .... ..++.++|  .+|++....+....+ .+| 
T Consensus        66 ~~~~~~~spd~~l~~~~~~~g~~~~~l~~~~~~~~g~~~~l~~~-~~~~-~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~  143 (582)
T 3o4h_A           66 SVLDPHYGVGRVILVRDVSKGAEQHALFKVNTSRPGEEQRLEAV-KPMR-ILSGVDTGEAVVFTGATEDRVALYALDGGG  143 (582)
T ss_dssp             EECEECTTCSEEEEEEECSTTSCCEEEEEEETTSTTCCEECTTS-CSBE-EEEEEECSSCEEEEEECSSCEEEEEEETTE
T ss_pred             ccccccCCCCeEEEEeccCCCCcceEEEEEeccCCCccccccCC-CCce-eeeeCCCCCeEEEEecCCCCceEEEccCCc
Confidence            345678888844555553   23  6788887  6654433221 1222 33455555  466666655665445 456 


Q ss_pred             ceEEecccCCccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecCCCCCcceEEEc
Q 026389          147 VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALS  226 (239)
Q Consensus       147 ~~~l~~~~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~~l~~pnGia~s  226 (239)
                      .+.+....       .++++++|||+.+++.+..             ....+.|+++|.++++.+.+.......+.++||
T Consensus       144 ~~~l~~~~-------~~~~~~spDG~~la~~~~~-------------~~~~~~i~~~d~~~g~~~~l~~~~~~~~~~~~S  203 (582)
T 3o4h_A          144 LRELARLP-------GFGFVSDIRGDLIAGLGFF-------------GGGRVSLFTSNLSSGGLRVFDSGEGSFSSASIS  203 (582)
T ss_dssp             EEEEEEES-------SCEEEEEEETTEEEEEEEE-------------ETTEEEEEEEETTTCCCEEECCSSCEEEEEEEC
T ss_pred             EEEeecCC-------CceEEECCCCCEEEEEEEc-------------CCCCeEEEEEcCCCCCceEeecCCCccccceEC
Confidence            44443221       1789999999654432210             111257999999888888776655556899999


Q ss_pred             CCCCEEEEEeC
Q 026389          227 KDEDYLVVCET  237 (239)
Q Consensus       227 ~dg~~lyvadt  237 (239)
                      |||++|+.++.
T Consensus       204 pDG~~l~~~~~  214 (582)
T 3o4h_A          204 PGMKVTAGLET  214 (582)
T ss_dssp             TTSCEEEEEEC
T ss_pred             CCCCEEEEccC
Confidence            99999986553

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=98.20  E-value=6.6e-05  Score=63.28  Aligned_cols=142  Identities=18%  Similarity=0.076  Sum_probs=89.8

Q ss_pred             CCcceEEEcCCCCEE-EEeCCCeEEEEec-CCcEEEeeeccCcCccCeEEcCCCCEEEEeCCC-----CeEEEc--c-CC
Q 026389           77 NGPEDVCVDRNGVLY-TATRDGWIKRLHK-NGTWENWKLIGGDTLLGITTTQENEILVCDADK-----GLLKVT--E-EG  146 (239)
Q Consensus        77 ~gPe~ia~d~~G~ly-~~~~~g~I~~~~~-~G~~~~~~~~~~~p~~Gl~~d~~G~L~v~d~~~-----g~~~v~--~-~g  146 (239)
                      ..-.+++|+++|..+ +++.+|.|..|+. +++............ .+++.++|+.+++....     +.+.+.  . ..
T Consensus        75 ~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~  153 (369)
T 3zwl_B           75 GTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWKSPVPVK-RVEFSPCGNYFLAILDNVMKNPGSINIYEIERDS  153 (369)
T ss_dssp             SCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSCEE-EEEECTTSSEEEEEECCBTTBCCEEEEEEEEECT
T ss_pred             CcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCeE-EEEEccCCCEEEEecCCccCCCCEEEEEEecCCc
Confidence            345678999988655 6679999999996 455433333455566 89999999866665444     555543  2 22


Q ss_pred             -ceEEeccc--------CCccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCC-CeEEEec-C
Q 026389          147 -VTVLASHV--------NGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSL-NETSILL-D  215 (239)
Q Consensus       147 -~~~l~~~~--------~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~-~~~~~~~-~  215 (239)
                       ...+....        ..........++++++|+.+++...                 .|.|..||..+ ++..... .
T Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----------------dg~i~i~d~~~~~~~~~~~~~  216 (369)
T 3zwl_B          154 ATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHK-----------------DGKISKYDVSNNYEYVDSIDL  216 (369)
T ss_dssp             TTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEET-----------------TSEEEEEETTTTTEEEEEEEC
T ss_pred             cceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcC-----------------CCEEEEEECCCCcEeEEEEec
Confidence             11111100        0001125678899999976665433                 48899999986 4443333 3


Q ss_pred             CCCCcceEEEcCCCCEEEEEe
Q 026389          216 SLFFANGVALSKDEDYLVVCE  236 (239)
Q Consensus       216 ~l~~pnGia~s~dg~~lyvad  236 (239)
                      .-.....++|+||+++|+++.
T Consensus       217 ~~~~v~~~~~~~~~~~l~~~~  237 (369)
T 3zwl_B          217 HEKSISDMQFSPDLTYFITSS  237 (369)
T ss_dssp             CSSCEEEEEECTTSSEEEEEE
T ss_pred             CCCceeEEEECCCCCEEEEec
Confidence            345578899999999887764

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=98.19  E-value=5.7e-05  Score=65.12  Aligned_cols=134  Identities=15%  Similarity=0.114  Sum_probs=87.8

Q ss_pred             cceEEEcCCC-CEE-EEeCCCeEEEEec-CCcE-EEee--eccCcCccCeEEcCC-CCEEEEeCCCCeEEEc--cCC--c
Q 026389           79 PEDVCVDRNG-VLY-TATRDGWIKRLHK-NGTW-ENWK--LIGGDTLLGITTTQE-NEILVCDADKGLLKVT--EEG--V  147 (239)
Q Consensus        79 Pe~ia~d~~G-~ly-~~~~~g~I~~~~~-~G~~-~~~~--~~~~~p~~Gl~~d~~-G~L~v~d~~~g~~~v~--~~g--~  147 (239)
                      -.++++.+++ .++ +++.|+.|..||. .++. ..+.  ....... .+++.++ ++++++-...+.+++.  .++  +
T Consensus       172 V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~-~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~  250 (344)
T 4gqb_B          172 VTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPT-SLAWHPQQSEVFVFGDENGTVSLVDTKSTSCV  250 (344)
T ss_dssp             EEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEE-EEEECSSCTTEEEEEETTSEEEEEESCC--CC
T ss_pred             eEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccce-eeeecCCCCcceEEeccCCcEEEEECCCCcEE
Confidence            3568888876 454 6678999999985 3442 2221  1223456 7888875 4787776667777775  345  3


Q ss_pred             eEEecccCCccccccccEEEcCCC-CEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecCCCCCcceEEEc
Q 026389          148 TVLASHVNGSRINLADDLIAATDG-SIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALS  226 (239)
Q Consensus       148 ~~l~~~~~g~~~~~pn~l~vd~dG-~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~~l~~pnGia~s  226 (239)
                      ..+....     ...+.+++.|+| ++.+|-+.                 .|.|..||..++++..+...-...++|+|+
T Consensus       251 ~~~~~h~-----~~v~~v~fsp~g~~~lasgs~-----------------D~~i~vwd~~~~~~~~~~~H~~~V~~v~~s  308 (344)
T 4gqb_B          251 LSSAVHS-----QCVTGLVFSPHSVPFLASLSE-----------------DCSLAVLDSSLSELFRSQAHRDFVRDATWS  308 (344)
T ss_dssp             EEEECCS-----SCEEEEEECSSSSCCEEEEET-----------------TSCEEEECTTCCEEEEECCCSSCEEEEEEC
T ss_pred             EEEcCCC-----CCEEEEEEccCCCeEEEEEeC-----------------CCeEEEEECCCCcEEEEcCCCCCEEEEEEe
Confidence            4443211     236789999998 55555443                 478999999888876665444567899999


Q ss_pred             CCCCEEEEE
Q 026389          227 KDEDYLVVC  235 (239)
Q Consensus       227 ~dg~~lyva  235 (239)
                      ||++.++++
T Consensus       309 p~~~~llas  317 (344)
T 4gqb_B          309 PLNHSLLTT  317 (344)
T ss_dssp             SSSTTEEEE
T ss_pred             CCCCeEEEE
Confidence            999876654

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=98.19  E-value=6.8e-05  Score=71.25  Aligned_cols=137  Identities=19%  Similarity=0.240  Sum_probs=91.4

Q ss_pred             cceEEEcCCCCEEEEeCCCeEEEEecC-CcEEEeeec-------cCcCccCeEEcCCCCEEEEeCCCCeEEEccCC----
Q 026389           79 PEDVCVDRNGVLYTATRDGWIKRLHKN-GTWENWKLI-------GGDTLLGITTTQENEILVCDADKGLLKVTEEG----  146 (239)
Q Consensus        79 Pe~ia~d~~G~ly~~~~~g~I~~~~~~-G~~~~~~~~-------~~~p~~Gl~~d~~G~L~v~d~~~g~~~v~~~g----  146 (239)
                      -.+|..|++|+||++. ++.|.++++. ++.+.+...       ..... .+..|.+|+||++....|+.+++++.    
T Consensus       375 v~~i~~d~~g~lWigt-~~GL~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~i~~d~~g~lWigT~~~Gl~~~~~~~~~~~  452 (758)
T 3ott_A          375 IRHIYEDKEQQLWIAT-DGSINRYDYATRQFIHYNIVDNTGTYNTNWTY-YIFEDTAGQLWISTCLGGIFVVDKHKLMQS  452 (758)
T ss_dssp             EEEEEECTTSCEEEEE-TTEEEEEETTTTEEEEEEEECCC--CBSSSEE-EEEECTTSEEEEEESSSCEEEEEHHHHHHC
T ss_pred             eEEEEECCCCCEEEEe-CCcHhhcCcCCCcEEEeecCCCcCCCCCceEE-EEEEcCCCCEEEEECCCceEEEcccccccc
Confidence            3568888999999998 5689999974 455544321       12234 67788999999998878999998321    


Q ss_pred             --ceEE----ecccCCccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecC-CC--
Q 026389          147 --VTVL----ASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLD-SL--  217 (239)
Q Consensus       147 --~~~l----~~~~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~-~l--  217 (239)
                        ....    .....+-+-.....+..|++|+||+...+                 .+.|++||+++++.+.+.. .+  
T Consensus       453 ~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~~~t-----------------~~Gl~~~d~~~~~~~~~~~~~~~~  515 (758)
T 3ott_A          453 TSGQYIAEQNYSVHNGLSGMFINQIIPDNEGNVWVLLYN-----------------NKGIDKINPRTREVTKLFADELTG  515 (758)
T ss_dssp             CSSEEECSEEECGGGTCSCSCEEEEEECTTSCEEEEETT-----------------CSSEEEEETTTTEEEEECTTTSCG
T ss_pred             CCcceecccccccccccccceeeeEEEcCCCCEEEEccC-----------------CCCcEEEeCCCCceEEecCCCcCC
Confidence              1111    11112222245678999999999994333                 1359999999888877642 22  


Q ss_pred             -CCcceEEEcCCCCEEEEE
Q 026389          218 -FFANGVALSKDEDYLVVC  235 (239)
Q Consensus       218 -~~pnGia~s~dg~~lyva  235 (239)
                       ..++.+..+.+|+ ||++
T Consensus       516 ~~~~~~i~~d~~g~-lWig  533 (758)
T 3ott_A          516 EKSPNYLLCDEDGL-LWVG  533 (758)
T ss_dssp             GGCEEEEEECTTSC-EEEE
T ss_pred             CcccceEEECCCCC-EEEE
Confidence             2457788888887 5555

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=98.19  E-value=0.00031  Score=58.58  Aligned_cols=137  Identities=18%  Similarity=0.213  Sum_probs=91.1

Q ss_pred             CCcceEEEcCCCCEE-EEeCCCeEEEEec-CCcE-EEeeeccCcCccCeEEcCCCCEEEEeCCCCeEEEc--cCC--ceE
Q 026389           77 NGPEDVCVDRNGVLY-TATRDGWIKRLHK-NGTW-ENWKLIGGDTLLGITTTQENEILVCDADKGLLKVT--EEG--VTV  149 (239)
Q Consensus        77 ~gPe~ia~d~~G~ly-~~~~~g~I~~~~~-~G~~-~~~~~~~~~p~~Gl~~d~~G~L~v~d~~~g~~~v~--~~g--~~~  149 (239)
                      ..-.+++|+++|+++ +++.++.|..|+. +++. ..+........ .+++.++++++++-...+.+++.  .++  ...
T Consensus        66 ~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~  144 (312)
T 4ery_A           66 LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVF-CCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKT  144 (312)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEE-EEEECSSSSEEEEEETTSCEEEEETTTCCEEEE
T ss_pred             CceEEEEEcCCCCEEEEECCCCEEEEEECCCCcEEEEEcCCCCCEE-EEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEE
Confidence            456689999988655 6679999999986 3443 33333334455 78899999877776666766664  445  333


Q ss_pred             EecccCCccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEE-ecC-CCCCcceEEEcC
Q 026389          150 LASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSI-LLD-SLFFANGVALSK  227 (239)
Q Consensus       150 l~~~~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~-~~~-~l~~pnGia~s~  227 (239)
                      +...  .   .....++++++|.++++.+.                 .|.|..||..+++... +.. .....+.++++|
T Consensus       145 ~~~~--~---~~v~~~~~~~~~~~l~~~~~-----------------d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~  202 (312)
T 4ery_A          145 LPAH--S---DPVSAVHFNRDGSLIVSSSY-----------------DGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSP  202 (312)
T ss_dssp             ECCC--S---SCEEEEEECTTSSEEEEEET-----------------TSCEEEEETTTCCEEEEECCSSCCCEEEEEECT
T ss_pred             ecCC--C---CcEEEEEEcCCCCEEEEEeC-----------------CCcEEEEECCCCceeeEEeccCCCceEEEEECC
Confidence            3211  1   23578999999987776544                 4789999987765433 322 233456799999


Q ss_pred             CCCEEEEEe
Q 026389          228 DEDYLVVCE  236 (239)
Q Consensus       228 dg~~lyvad  236 (239)
                      ++++|+++.
T Consensus       203 ~~~~l~~~~  211 (312)
T 4ery_A          203 NGKYILAAT  211 (312)
T ss_dssp             TSSEEEEEE
T ss_pred             CCCEEEEEc
Confidence            999887654

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=98.18  E-value=8.3e-05  Score=63.59  Aligned_cols=140  Identities=12%  Similarity=0.082  Sum_probs=87.5

Q ss_pred             CCcceEEEcCCCCEE-EEeCCCeEEEEecC-CcEE---EeeeccCcCccCeEEcCCCCEEEEeCCCCeEEEc--cCC--c
Q 026389           77 NGPEDVCVDRNGVLY-TATRDGWIKRLHKN-GTWE---NWKLIGGDTLLGITTTQENEILVCDADKGLLKVT--EEG--V  147 (239)
Q Consensus        77 ~gPe~ia~d~~G~ly-~~~~~g~I~~~~~~-G~~~---~~~~~~~~p~~Gl~~d~~G~L~v~d~~~g~~~v~--~~g--~  147 (239)
                      ..-.+++|+++|..+ +++.|+.|..|+.+ ++.+   .+........ .+++.++|+++++-...+.+++.  ..+  .
T Consensus        62 ~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~-~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~  140 (345)
T 3fm0_A           62 RTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVK-SVAWAPSGNLLATCSRDKSVWVWEVDEEDEY  140 (345)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEE-EEEECTTSSEEEEEETTSCEEEEEECTTSCE
T ss_pred             CcEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCce-EEEEeCCCCEEEEEECCCeEEEEECCCCCCe
Confidence            345679999988755 66789999888754 3322   2222233456 89999999877776666666664  333  2


Q ss_pred             eEEecccCCccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEE---EecCCCCCcceEE
Q 026389          148 TVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETS---ILLDSLFFANGVA  224 (239)
Q Consensus       148 ~~l~~~~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~---~~~~~l~~pnGia  224 (239)
                      +.+. ...+. -...+.+++.|+|.++++-+.                 .|.|..||..+++..   .+...-...+.++
T Consensus       141 ~~~~-~~~~h-~~~v~~~~~~p~~~~l~s~s~-----------------d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~  201 (345)
T 3fm0_A          141 ECVS-VLNSH-TQDVKHVVWHPSQELLASASY-----------------DDTVKLYREEEDDWVCCATLEGHESTVWSLA  201 (345)
T ss_dssp             EEEE-EECCC-CSCEEEEEECSSSSCEEEEET-----------------TSCEEEEEEETTEEEEEEEECCCSSCEEEEE
T ss_pred             EEEE-EecCc-CCCeEEEEECCCCCEEEEEeC-----------------CCcEEEEEecCCCEEEEEEecCCCCceEEEE
Confidence            2221 11111 123578999999976666543                 466777776655432   2333344568899


Q ss_pred             EcCCCCEEEEEe
Q 026389          225 LSKDEDYLVVCE  236 (239)
Q Consensus       225 ~s~dg~~lyvad  236 (239)
                      |+|||++|+.+.
T Consensus       202 ~sp~g~~l~s~s  213 (345)
T 3fm0_A          202 FDPSGQRLASCS  213 (345)
T ss_dssp             ECTTSSEEEEEE
T ss_pred             ECCCCCEEEEEe
Confidence            999999876653

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=98.18  E-value=0.00011  Score=63.07  Aligned_cols=135  Identities=16%  Similarity=0.150  Sum_probs=88.0

Q ss_pred             CCcceEEEcCCCCEEEEeCCCeEEEEecC-CcE-EEeee---c---cCcCccCeEEcCCCCEEEEeCCC---CeEEEc--
Q 026389           77 NGPEDVCVDRNGVLYTATRDGWIKRLHKN-GTW-ENWKL---I---GGDTLLGITTTQENEILVCDADK---GLLKVT--  143 (239)
Q Consensus        77 ~gPe~ia~d~~G~ly~~~~~g~I~~~~~~-G~~-~~~~~---~---~~~p~~Gl~~d~~G~L~v~d~~~---g~~~v~--  143 (239)
                      ....+++++++|.++++..+|.|..|+.. ++. ..+..   .   ..... .++++++|+++++....   +.+++.  
T Consensus       187 ~~i~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~-~i~~~~~~~~l~~~~~d~~~g~i~i~d~  265 (397)
T 1sq9_A          187 QFATSVDISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIR-SVKFSPQGSLLAIAHDSNSFGCITLYET  265 (397)
T ss_dssp             CCCCEEEECTTSEEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEE-EEEECSSTTEEEEEEEETTEEEEEEEET
T ss_pred             CCceEEEECCCceEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccc-eEEECCCCCEEEEEecCCCCceEEEEEC
Confidence            45678999998844466689999999964 443 23322   2   44556 89999999877765555   666665  


Q ss_pred             cCC--ceEEecccC-C-------ccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEe
Q 026389          144 EEG--VTVLASHVN-G-------SRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSIL  213 (239)
Q Consensus       144 ~~g--~~~l~~~~~-g-------~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~  213 (239)
                      .++  ...+..... .       ..-.....++++++|+++++...                 .|.|..||..+++....
T Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----------------dg~i~iwd~~~~~~~~~  328 (397)
T 1sq9_A          266 EFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGW-----------------DGKLRFWDVKTKERITT  328 (397)
T ss_dssp             TTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEET-----------------TSEEEEEETTTTEEEEE
T ss_pred             CCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeC-----------------CCeEEEEEcCCCceeEE
Confidence            344  333322000 0       01134678999999987776544                 58899999987765444


Q ss_pred             cC------C----------------CCCcceEEEcCCC
Q 026389          214 LD------S----------------LFFANGVALSKDE  229 (239)
Q Consensus       214 ~~------~----------------l~~pnGia~s~dg  229 (239)
                      ..      +                -...+.++|++||
T Consensus       329 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g  366 (397)
T 1sq9_A          329 LNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKG  366 (397)
T ss_dssp             EECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTT
T ss_pred             EecccCcccchhhhhccccccccccCCceeEEEecccc
Confidence            43      2                3456899999998

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=98.17  E-value=8.9e-05  Score=62.86  Aligned_cols=139  Identities=6%  Similarity=-0.083  Sum_probs=87.5

Q ss_pred             CcceEEEcCCCCEE-EEeCCCeEEEEecC-Cc---EEEeeeccCcCccCeEEcCCCCEEEEeCCCCeEEEc--cCC-ceE
Q 026389           78 GPEDVCVDRNGVLY-TATRDGWIKRLHKN-GT---WENWKLIGGDTLLGITTTQENEILVCDADKGLLKVT--EEG-VTV  149 (239)
Q Consensus        78 gPe~ia~d~~G~ly-~~~~~g~I~~~~~~-G~---~~~~~~~~~~p~~Gl~~d~~G~L~v~d~~~g~~~v~--~~g-~~~  149 (239)
                      .-.+++|+++|.++ ++..++.|..|+.+ ++   ...+........ .+++.++|+++++-...+.+++.  .++ ...
T Consensus        10 ~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~-~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~   88 (372)
T 1k8k_C           10 PISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVT-GVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKP   88 (372)
T ss_dssp             CCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEE-EEEEETTTTEEEEEETTSCEEEEEEETTEEEE
T ss_pred             CeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCccc-EEEEeCCCCEEEEEcCCCeEEEEECCCCeeee
Confidence            34678999998766 55689999999864 43   233333344556 89999999877665556666654  344 222


Q ss_pred             EecccCCccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCe----EEEecCC-CCCcceEE
Q 026389          150 LASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNE----TSILLDS-LFFANGVA  224 (239)
Q Consensus       150 l~~~~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~----~~~~~~~-l~~pnGia  224 (239)
                      ..... + .-.....+++.++|+.+++...                 .|.|..||.++++    ...+... -...+.++
T Consensus        89 ~~~~~-~-~~~~v~~~~~~~~~~~l~~~~~-----------------d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~  149 (372)
T 1k8k_C           89 TLVIL-R-INRAARCVRWAPNEKKFAVGSG-----------------SRVISICYFEQENDWWVCKHIKKPIRSTVLSLD  149 (372)
T ss_dssp             EEECC-C-CSSCEEEEEECTTSSEEEEEET-----------------TSSEEEEEEETTTTEEEEEEECTTCCSCEEEEE
T ss_pred             eEEee-c-CCCceeEEEECCCCCEEEEEeC-----------------CCEEEEEEecCCCcceeeeeeecccCCCeeEEE
Confidence            21111 1 1134688999999976665433                 3667776665544    2333222 44578999


Q ss_pred             EcCCCCEEEEEe
Q 026389          225 LSKDEDYLVVCE  236 (239)
Q Consensus       225 ~s~dg~~lyvad  236 (239)
                      ++|++++|+++.
T Consensus       150 ~~~~~~~l~~~~  161 (372)
T 1k8k_C          150 WHPNSVLLAAGS  161 (372)
T ss_dssp             ECTTSSEEEEEE
T ss_pred             EcCCCCEEEEEc
Confidence            999999877654

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=98.17  E-value=0.00017  Score=62.70  Aligned_cols=134  Identities=14%  Similarity=0.140  Sum_probs=88.8

Q ss_pred             ceEEEcCCCCEE-EEeCCCeEEEEecC-CcEE-EeeeccCcCccCeEEcCCCCEEEEeCCCCeEEEc--cCC-ceEEecc
Q 026389           80 EDVCVDRNGVLY-TATRDGWIKRLHKN-GTWE-NWKLIGGDTLLGITTTQENEILVCDADKGLLKVT--EEG-VTVLASH  153 (239)
Q Consensus        80 e~ia~d~~G~ly-~~~~~g~I~~~~~~-G~~~-~~~~~~~~p~~Gl~~d~~G~L~v~d~~~g~~~v~--~~g-~~~l~~~  153 (239)
                      .+++|+++|..+ +++.++.|..|+.+ ++.. .+........ .+++.++|+.+++-...+.+++.  .++ .......
T Consensus       127 ~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~-~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~  205 (393)
T 1erj_A          127 RSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIY-SLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSI  205 (393)
T ss_dssp             EEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEE-EEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEEC
T ss_pred             EEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEccCCCCEE-EEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEEc
Confidence            478999998755 66799999999964 4432 2222334455 89999999877776667777775  455 2222211


Q ss_pred             cCCccccccccEEEcC-CCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecC--------CCCCcceEE
Q 026389          154 VNGSRINLADDLIAAT-DGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLD--------SLFFANGVA  224 (239)
Q Consensus       154 ~~g~~~~~pn~l~vd~-dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~--------~l~~pnGia  224 (239)
                       .    .....+++.+ +|+++++.+.                 .|.|..||..+++......        .-.....++
T Consensus       206 -~----~~v~~~~~~~~~~~~l~~~s~-----------------d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~  263 (393)
T 1erj_A          206 -E----DGVTTVAVSPGDGKYIAAGSL-----------------DRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVV  263 (393)
T ss_dssp             -S----SCEEEEEECSTTCCEEEEEET-----------------TSCEEEEETTTCCEEEEEC------CCCSSCEEEEE
T ss_pred             -C----CCcEEEEEECCCCCEEEEEcC-----------------CCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEE
Confidence             1    2356788888 7887776544                 4788889988776543321        123457899


Q ss_pred             EcCCCCEEEEEe
Q 026389          225 LSKDEDYLVVCE  236 (239)
Q Consensus       225 ~s~dg~~lyvad  236 (239)
                      |+|||++|+.+.
T Consensus       264 ~~~~g~~l~s~s  275 (393)
T 1erj_A          264 FTRDGQSVVSGS  275 (393)
T ss_dssp             ECTTSSEEEEEE
T ss_pred             ECCCCCEEEEEe
Confidence            999999887653

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=98.16  E-value=0.00012  Score=62.68  Aligned_cols=138  Identities=11%  Similarity=0.108  Sum_probs=86.5

Q ss_pred             cceEEEcCCCCEE-EEeCCCeEEEEecCC-cEE-Eee--e-ccCcCccCeEEcCCCCEEEEeCCCCeEEEc--cCC-ceE
Q 026389           79 PEDVCVDRNGVLY-TATRDGWIKRLHKNG-TWE-NWK--L-IGGDTLLGITTTQENEILVCDADKGLLKVT--EEG-VTV  149 (239)
Q Consensus        79 Pe~ia~d~~G~ly-~~~~~g~I~~~~~~G-~~~-~~~--~-~~~~p~~Gl~~d~~G~L~v~d~~~g~~~v~--~~g-~~~  149 (239)
                      -..++|+|+|.+. +++.|+.|..|+.++ +.. ...  . ...... .+++.++|+++++-...+.+++.  ..+ .+.
T Consensus        19 v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~-~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~   97 (345)
T 3fm0_A           19 CWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVR-KVAWSPCGNYLASASFDATTCIWKKNQDDFEC   97 (345)
T ss_dssp             EEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEE-EEEECTTSSEEEEEETTSCEEEEEECCC-EEE
T ss_pred             EEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEE-EEEECCCCCEEEEEECCCcEEEEEccCCCeEE
Confidence            3468999998755 667999999998644 321 111  1 122345 78999999877776666777665  233 222


Q ss_pred             EecccCCccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCe----EEEecCCCCCcceEEE
Q 026389          150 LASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNE----TSILLDSLFFANGVAL  225 (239)
Q Consensus       150 l~~~~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~----~~~~~~~l~~pnGia~  225 (239)
                      +.. ..+. -...+.+++.|+|+++++-+.                 .+.|..||.++++    +..+...-...+.++|
T Consensus        98 ~~~-~~~h-~~~v~~v~~sp~~~~l~s~s~-----------------D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~  158 (345)
T 3fm0_A           98 VTT-LEGH-ENEVKSVAWAPSGNLLATCSR-----------------DKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVW  158 (345)
T ss_dssp             EEE-ECCC-SSCEEEEEECTTSSEEEEEET-----------------TSCEEEEEECTTSCEEEEEEECCCCSCEEEEEE
T ss_pred             EEE-ccCC-CCCceEEEEeCCCCEEEEEEC-----------------CCeEEEEECCCCCCeEEEEEecCcCCCeEEEEE
Confidence            221 1221 124688999999988777654                 4677778765442    1222233345678999


Q ss_pred             cCCCCEEEEEe
Q 026389          226 SKDEDYLVVCE  236 (239)
Q Consensus       226 s~dg~~lyvad  236 (239)
                      +|++++|+.+.
T Consensus       159 ~p~~~~l~s~s  169 (345)
T 3fm0_A          159 HPSQELLASAS  169 (345)
T ss_dssp             CSSSSCEEEEE
T ss_pred             CCCCCEEEEEe
Confidence            99998776553

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=98.16  E-value=7.7e-05  Score=69.67  Aligned_cols=126  Identities=10%  Similarity=0.058  Sum_probs=73.3

Q ss_pred             CCeEEEEecCC-cEEEeee---ccCcCccCeEEcCCCC-EEEEeCCC-----CeEEEc-cCC--ceEEecccCCcccccc
Q 026389           96 DGWIKRLHKNG-TWENWKL---IGGDTLLGITTTQENE-ILVCDADK-----GLLKVT-EEG--VTVLASHVNGSRINLA  162 (239)
Q Consensus        96 ~g~I~~~~~~G-~~~~~~~---~~~~p~~Gl~~d~~G~-L~v~d~~~-----g~~~v~-~~g--~~~l~~~~~g~~~~~p  162 (239)
                      +.+|+.++.++ +......   ...... .+++.+||+ |+++....     .+..++ .+|  .+.+.......-....
T Consensus       234 ~~~l~~~d~~~~~~~~~~~~~~~~~~~~-~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~  312 (706)
T 2z3z_A          234 HVTVGIYHLATGKTVYLQTGEPKEKFLT-NLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPL  312 (706)
T ss_dssp             EEEEEEEETTTTEEEECCCCSCTTCEEE-EEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCC
T ss_pred             eeEEEEEECCCCceEeeccCCCCceeEe-eEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECcc
Confidence            35788888654 3333221   112345 688999997 66644332     344455 455  2333322111111224


Q ss_pred             ccEEEcC--CCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecCCCCCcce-EEEcCCCCEEEEEeC
Q 026389          163 DDLIAAT--DGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANG-VALSKDEDYLVVCET  237 (239)
Q Consensus       163 n~l~vd~--dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~~l~~pnG-ia~s~dg~~lyvadt  237 (239)
                      +.+++.+  ||+++++....               +..+|+.+|.+++.++.+..+-..... ++++|||+.||++.+
T Consensus       313 ~~~~~sp~~dg~~l~~~~~~---------------g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~  375 (706)
T 2z3z_A          313 HPLTFLPGSNNQFIWQSRRD---------------GWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFEST  375 (706)
T ss_dssp             SCCEECTTCSSEEEEEECTT---------------SSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEES
T ss_pred             CCceeecCCCCEEEEEEccC---------------CccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEec
Confidence            6789999  99765554321               236899999776767666554333445 799999999887654

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=98.16  E-value=0.00011  Score=63.73  Aligned_cols=143  Identities=10%  Similarity=0.059  Sum_probs=87.4

Q ss_pred             cceEEEcCCCCEE-EEe--CCCeEEEEecC-CcEEEeeeccCcCccCeEEcCCCCEEEEeCCCCeEEEc-cCCceEEecc
Q 026389           79 PEDVCVDRNGVLY-TAT--RDGWIKRLHKN-GTWENWKLIGGDTLLGITTTQENEILVCDADKGLLKVT-EEGVTVLASH  153 (239)
Q Consensus        79 Pe~ia~d~~G~ly-~~~--~~g~I~~~~~~-G~~~~~~~~~~~p~~Gl~~d~~G~L~v~d~~~g~~~v~-~~g~~~l~~~  153 (239)
                      ...++|+|||++. +++  .++.|..||.. ++........+... .++|.++|+++++-...++..++ .++.......
T Consensus       136 ~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~~~~~V~-~v~fspdg~~l~s~s~~~~~~~~~~~~~~~~~~~  214 (365)
T 4h5i_A          136 TKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIETRGEVK-DLHFSTDGKVVAYITGSSLEVISTVTGSCIARKT  214 (365)
T ss_dssp             EEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEECSSCCC-EEEECTTSSEEEEECSSCEEEEETTTCCEEEEEC
T ss_pred             EEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeCCCCceE-EEEEccCCceEEeccceeEEEEEeccCcceeeee
Confidence            4569999999754 444  67899999964 44332234445667 99999999988877767777776 4552221111


Q ss_pred             cCCccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEE-----EecCCCCCcceEEEcCC
Q 026389          154 VNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETS-----ILLDSLFFANGVALSKD  228 (239)
Q Consensus       154 ~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~-----~~~~~l~~pnGia~s~d  228 (239)
                      ..+. -...+.+++.+||..+++-+...             .....+..++.......     .+.......+.++|+||
T Consensus       215 ~~~~-~~~v~~v~fspdg~~l~~~s~d~-------------~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spd  280 (365)
T 4h5i_A          215 DFDK-NWSLSKINFIADDTVLIAASLKK-------------GKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMK  280 (365)
T ss_dssp             CCCT-TEEEEEEEEEETTEEEEEEEESS-------------SCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTT
T ss_pred             cCCC-CCCEEEEEEcCCCCEEEEEecCC-------------cceeEEeecccccceecceeeeeecCCCCCeEeEEECCC
Confidence            1111 12357899999997766543210             01124555665444332     22333445678999999


Q ss_pred             CCEEEEEe
Q 026389          229 EDYLVVCE  236 (239)
Q Consensus       229 g~~lyvad  236 (239)
                      |++|.++.
T Consensus       281 g~~lasgs  288 (365)
T 4h5i_A          281 GELAVLAS  288 (365)
T ss_dssp             SCEEEEEE
T ss_pred             CCceEEEc
Confidence            99877653

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=98.15  E-value=0.00019  Score=60.64  Aligned_cols=136  Identities=14%  Similarity=0.186  Sum_probs=88.4

Q ss_pred             CcceEEEcCCCCE-EEEeCCCeEEEEecCCcE-EEeeeccCcCccCeEEcC------CCCEEEEeCCCCeEEEc--cCC-
Q 026389           78 GPEDVCVDRNGVL-YTATRDGWIKRLHKNGTW-ENWKLIGGDTLLGITTTQ------ENEILVCDADKGLLKVT--EEG-  146 (239)
Q Consensus        78 gPe~ia~d~~G~l-y~~~~~g~I~~~~~~G~~-~~~~~~~~~p~~Gl~~d~------~G~L~v~d~~~g~~~v~--~~g-  146 (239)
                      .-.++++++++.+ ++++.|+.|..|+..++. ..+........ .+++.+      ++.++++-...+.+++.  ..+ 
T Consensus       109 ~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~~~~~~~~~h~~~v~-~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~  187 (319)
T 3frx_A          109 DVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVS-QVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQ  187 (319)
T ss_dssp             CEEEEEECTTSCEEEEEETTSCEEEEETTSCEEEEECCCSSCEE-EEEECCC------CCEEEEEETTSCEEEEETTTTE
T ss_pred             cEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeccCCcEE-EEEEccCCCCCCCccEEEEEeCCCEEEEEECCcch
Confidence            4567889998865 467799999999976653 23222223333 566654      34456665556777665  333 


Q ss_pred             c-eEEecccCCccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecCCCCCcceEEE
Q 026389          147 V-TVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVAL  225 (239)
Q Consensus       147 ~-~~l~~~~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~~l~~pnGia~  225 (239)
                      . ..+.    +. -...+.+++.|+|+++++-+.                 .|.|..||..+++.......-.....++|
T Consensus       188 ~~~~~~----~h-~~~v~~~~~sp~g~~l~s~~~-----------------dg~i~iwd~~~~~~~~~~~~~~~v~~~~~  245 (319)
T 3frx_A          188 IEADFI----GH-NSNINTLTASPDGTLIASAGK-----------------DGEIMLWNLAAKKAMYTLSAQDEVFSLAF  245 (319)
T ss_dssp             EEEEEC----CC-CSCEEEEEECTTSSEEEEEET-----------------TCEEEEEETTTTEEEEEEECCSCEEEEEE
T ss_pred             hheeec----CC-CCcEEEEEEcCCCCEEEEEeC-----------------CCeEEEEECCCCcEEEEecCCCcEEEEEE
Confidence            2 2221    11 124678999999987777554                 58899999988776554444456788999


Q ss_pred             cCCCCEEEEEe
Q 026389          226 SKDEDYLVVCE  236 (239)
Q Consensus       226 s~dg~~lyvad  236 (239)
                      +||+.+|..+.
T Consensus       246 sp~~~~la~~~  256 (319)
T 3frx_A          246 SPNRYWLAAAT  256 (319)
T ss_dssp             CSSSSEEEEEE
T ss_pred             cCCCCEEEEEc
Confidence            99999876653

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=98.14  E-value=3.6e-05  Score=66.82  Aligned_cols=118  Identities=11%  Similarity=0.010  Sum_probs=72.8

Q ss_pred             CEEEEeCCCeEEEEecCC-cEE---Eee-------eccCcCccC---eEEcCCC-CEEEEeC-C---------C-CeEEE
Q 026389           89 VLYTATRDGWIKRLHKNG-TWE---NWK-------LIGGDTLLG---ITTTQEN-EILVCDA-D---------K-GLLKV  142 (239)
Q Consensus        89 ~ly~~~~~g~I~~~~~~G-~~~---~~~-------~~~~~p~~G---l~~d~~G-~L~v~d~-~---------~-g~~~v  142 (239)
                      .+|+...+++|+.++..+ +..   .+.       .....|. |   ++++++| ++||+.. .         . .+..+
T Consensus       213 ~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~-g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~vi  291 (361)
T 2oiz_A          213 KAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPG-GYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVM  291 (361)
T ss_dssp             EEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEEC-CSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEE
T ss_pred             EEEEEeCCCeEEEEEecCCCceecccccccCccccccccccC-CeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEE
Confidence            344555667788877532 221   111       0111344 4   8999885 7999864 1         1 24445


Q ss_pred             c-cCCceEEecccCCccccccccEEEcCCCC-EEEEeCCCCcCcccccccceeecCCceEEEEeCCCC--eEEEe-cCCC
Q 026389          143 T-EEGVTVLASHVNGSRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLN--ETSIL-LDSL  217 (239)
Q Consensus       143 ~-~~g~~~l~~~~~g~~~~~pn~l~vd~dG~-iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~--~~~~~-~~~l  217 (239)
                      | ..+ +++.....+   . |.++++++||+ +|+++.                   +.|..||.+++  ++... ...-
T Consensus       292 D~~t~-~~v~~i~~~---~-p~~ia~spdg~~l~v~n~-------------------~~v~v~D~~t~~l~~~~~i~~~G  347 (361)
T 2oiz_A          292 DTKTK-QRVARIPGR---D-ALSMTIDQQRNLMLTLDG-------------------GNVNVYDISQPEPKLLRTIEGAA  347 (361)
T ss_dssp             ETTTT-EEEEEEECT---T-CCEEEEETTTTEEEEECS-------------------SCEEEEECSSSSCEEEEEETTSC
T ss_pred             ECCCC-cEEEEEecC---C-eeEEEECCCCCEEEEeCC-------------------CeEEEEECCCCcceeeEEeccCC
Confidence            6 344 222221122   2 89999999995 666541                   57999999988  66544 3556


Q ss_pred             CCcceEEEcCCCCE
Q 026389          218 FFANGVALSKDEDY  231 (239)
Q Consensus       218 ~~pnGia~s~dg~~  231 (239)
                      ..|++++++|||++
T Consensus       348 ~~P~~~~~~p~G~~  361 (361)
T 2oiz_A          348 EASLQVQFHPVGGT  361 (361)
T ss_dssp             SSEEEEEECCCSCC
T ss_pred             CCcEEEEecCCCCC
Confidence            78999999999973

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=98.14  E-value=1.3e-05  Score=74.92  Aligned_cols=137  Identities=8%  Similarity=-0.050  Sum_probs=85.6

Q ss_pred             CcceEEEcCCCCEEEEeCCCeEEEEec-CCcEEEeeeccC----cCccCeEEcCCCCEEE-EeCCC--------CeEE-E
Q 026389           78 GPEDVCVDRNGVLYTATRDGWIKRLHK-NGTWENWKLIGG----DTLLGITTTQENEILV-CDADK--------GLLK-V  142 (239)
Q Consensus        78 gPe~ia~d~~G~ly~~~~~g~I~~~~~-~G~~~~~~~~~~----~p~~Gl~~d~~G~L~v-~d~~~--------g~~~-v  142 (239)
                      .+.+++|.+||.++.++.+|.|+.|+. +|+.........    ... .+++.+||+.++ +....        +.+. .
T Consensus        18 ~~~~~~~spdg~~~~~~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~-~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~   96 (723)
T 1xfd_A           18 HDPEAKWISDTEFIYREQKGTVRLWNVETNTSTVLIEGKKIESLRAI-RYEISPDREYALFSYNVEPIYQHSYTGYYVLS   96 (723)
T ss_dssp             CCCCCCBSSSSCBCCCCSSSCEEEBCGGGCCCEEEECTTTTTTTTCS-EEEECTTSSEEEEEESCCCCSSSCCCSEEEEE
T ss_pred             cccccEEcCCCcEEEEeCCCCEEEEECCCCcEEEEeccccccccccc-eEEECCCCCEEEEEecCccceeecceeeEEEE
Confidence            467789999998665568899999986 455443333222    256 799999997444 33221        3333 3


Q ss_pred             c-cCC-ceEEecccCCccccccccEEEcCCC-CEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecCCCC-
Q 026389          143 T-EEG-VTVLASHVNGSRINLADDLIAATDG-SIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLF-  218 (239)
Q Consensus       143 ~-~~g-~~~l~~~~~g~~~~~pn~l~vd~dG-~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~~l~-  218 (239)
                      + .+| .+.+... .+ .-.....++++||| .|.++..                   +.|+.+|.++++...+..... 
T Consensus        97 d~~~~~~~~l~~~-~~-~~~~~~~~~~SPdG~~la~~~~-------------------~~i~~~~~~~g~~~~~~~~~~~  155 (723)
T 1xfd_A           97 KIPHGDPQSLDPP-EV-SNAKLQYAGWGPKGQQLIFIFE-------------------NNIYYCAHVGKQAIRVVSTGKE  155 (723)
T ss_dssp             ESSSCCCEECCCT-TC-CSCCCSBCCBCSSTTCEEEEET-------------------TEEEEESSSSSCCEEEECCCBT
T ss_pred             ECCCCceEeccCC-cc-ccccccccEECCCCCEEEEEEC-------------------CeEEEEECCCCceEEEecCCCC
Confidence            4 445 4333321 11 11125678999999 5666542                   479999988877665543311 


Q ss_pred             ------------------CcceEEEcCCCCEEEEEe
Q 026389          219 ------------------FANGVALSKDEDYLVVCE  236 (239)
Q Consensus       219 ------------------~pnGia~s~dg~~lyvad  236 (239)
                                        ...+++|||||++|+++.
T Consensus       156 ~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~  191 (723)
T 1xfd_A          156 GVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAA  191 (723)
T ss_dssp             TTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEE
T ss_pred             CceECcccceeEEEEeccCcceEEECCCCCEEEEEE
Confidence                              236899999999887653

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=98.14  E-value=9.9e-05  Score=63.59  Aligned_cols=135  Identities=10%  Similarity=0.096  Sum_probs=84.2

Q ss_pred             cceEEEcCCCCEE-EEeCCCeEEEEecC-CcE-EEeeeccCcCccCeEEcCCC-CEEEEeCCCCeEEEc--cCC--ceEE
Q 026389           79 PEDVCVDRNGVLY-TATRDGWIKRLHKN-GTW-ENWKLIGGDTLLGITTTQEN-EILVCDADKGLLKVT--EEG--VTVL  150 (239)
Q Consensus        79 Pe~ia~d~~G~ly-~~~~~g~I~~~~~~-G~~-~~~~~~~~~p~~Gl~~d~~G-~L~v~d~~~g~~~v~--~~g--~~~l  150 (239)
                      -.+++|.++|+.+ +++.++.|..||.. |+. ..+........ .+++.+++ .++++-...+.+++.  ..+  ...+
T Consensus       130 V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~-~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~  208 (344)
T 4gqb_B          130 VSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVT-CVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQI  208 (344)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEE-EEEECSSCTTEEEEEETTSCEEEEETTSSSCEEEC
T ss_pred             EEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCceE-EEEecCCCCCceeeeccccccccccccccceeeee
Confidence            3578999998755 66799999999964 443 33332334455 78898887 577766556777764  344  3333


Q ss_pred             ecccCCccccccccEEEcCCC-CEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEE-EecCCCCCcceEEEcCC
Q 026389          151 ASHVNGSRINLADDLIAATDG-SIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETS-ILLDSLFFANGVALSKD  228 (239)
Q Consensus       151 ~~~~~g~~~~~pn~l~vd~dG-~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~-~~~~~l~~pnGia~s~d  228 (239)
                      .....+   ...+.+++.+++ +++++...                 +|.|..||..+++.. .+...-...+.|+|+||
T Consensus       209 ~~~~~~---~~~~~~~~~p~~~~~l~sg~~-----------------dg~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~  268 (344)
T 4gqb_B          209 GCSAPG---YLPTSLAWHPQQSEVFVFGDE-----------------NGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPH  268 (344)
T ss_dssp             C----C---CCEEEEEECSSCTTEEEEEET-----------------TSEEEEEESCC--CCEEEECCSSCEEEEEECSS
T ss_pred             ecceee---ccceeeeecCCCCcceEEecc-----------------CCcEEEEECCCCcEEEEEcCCCCCEEEEEEccC
Confidence            222222   235788898864 67666443                 578999998776543 33333345688999999


Q ss_pred             CCEEEE
Q 026389          229 EDYLVV  234 (239)
Q Consensus       229 g~~lyv  234 (239)
                      |..+++
T Consensus       269 g~~~la  274 (344)
T 4gqb_B          269 SVPFLA  274 (344)
T ss_dssp             SSCCEE
T ss_pred             CCeEEE
Confidence            854433

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=98.13  E-value=0.00014  Score=61.66  Aligned_cols=141  Identities=11%  Similarity=-0.004  Sum_probs=87.3

Q ss_pred             CCcceEEEcCCCCEE-EEeCCCeEEEEec-CCcEEEe---eeccCcCccCeEEcCCCCEEEEeCCCCeEEEc--cCC--c
Q 026389           77 NGPEDVCVDRNGVLY-TATRDGWIKRLHK-NGTWENW---KLIGGDTLLGITTTQENEILVCDADKGLLKVT--EEG--V  147 (239)
Q Consensus        77 ~gPe~ia~d~~G~ly-~~~~~g~I~~~~~-~G~~~~~---~~~~~~p~~Gl~~d~~G~L~v~d~~~g~~~v~--~~g--~  147 (239)
                      ....+++|+++|.++ +++.+|.|..|+. +++....   ........ .+++.++|+.+++-...+.+++.  ..+  .
T Consensus        53 ~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~  131 (372)
T 1k8k_C           53 GQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAAR-CVRWAPNEKKFAVGSGSRVISICYFEQENDW  131 (372)
T ss_dssp             SCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEE-EEEECTTSSEEEEEETTSSEEEEEEETTTTE
T ss_pred             CcccEEEEeCCCCEEEEEcCCCeEEEEECCCCeeeeeEEeecCCCcee-EEEECCCCCEEEEEeCCCEEEEEEecCCCcc
Confidence            355689999988655 6678999999985 3442211   22334456 89999999766655555655553  333  2


Q ss_pred             eEEecccCCccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeC------------------CCCe
Q 026389          148 TVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDP------------------SLNE  209 (239)
Q Consensus       148 ~~l~~~~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~------------------~~~~  209 (239)
                      ........+ .-.....+++.++|+.+++...                 .|.|..||.                  ..++
T Consensus       132 ~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~-----------------dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~  193 (372)
T 1k8k_C          132 WVCKHIKKP-IRSTVLSLDWHPNSVLLAAGSC-----------------DFKCRIFSAYIKEVEERPAPTPWGSKMPFGE  193 (372)
T ss_dssp             EEEEEECTT-CCSCEEEEEECTTSSEEEEEET-----------------TSCEEEEECCCTTTSCCCCCBTTBSCCCTTC
T ss_pred             eeeeeeecc-cCCCeeEEEEcCCCCEEEEEcC-----------------CCCEEEEEcccccccccccccccccccchhh
Confidence            222111111 1234788999999987666543                 477888883                  2344


Q ss_pred             EE-EecCCCCCcceEEEcCCCCEEEEEe
Q 026389          210 TS-ILLDSLFFANGVALSKDEDYLVVCE  236 (239)
Q Consensus       210 ~~-~~~~~l~~pnGia~s~dg~~lyvad  236 (239)
                      .. .+...-...+.++++||+++|+++.
T Consensus       194 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~  221 (372)
T 1k8k_C          194 LMFESSSSCGWVHGVCFSANGSRVAWVS  221 (372)
T ss_dssp             EEEECCCCSSCEEEEEECSSSSEEEEEE
T ss_pred             heEecCCCCCeEEEEEECCCCCEEEEEe
Confidence            33 3333344578999999999887664

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.11  E-value=0.0001  Score=68.40  Aligned_cols=141  Identities=9%  Similarity=-0.017  Sum_probs=89.9

Q ss_pred             cCCcceEEEc--CC-CCEEEEe------------------CCCeEEEEecCC-cEEEeeeccCcCccCeEEcCCC-CEEE
Q 026389           76 LNGPEDVCVD--RN-GVLYTAT------------------RDGWIKRLHKNG-TWENWKLIGGDTLLGITTTQEN-EILV  132 (239)
Q Consensus        76 ~~gPe~ia~d--~~-G~ly~~~------------------~~g~I~~~~~~G-~~~~~~~~~~~p~~Gl~~d~~G-~L~v  132 (239)
                      ..+|+++++.  |+ +.+|++.                  .++.+..+|.+. ++......++.|. +++++++| .+|+
T Consensus       133 g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvID~~t~~v~~qI~Vgg~pd-~~~~spdGk~~~v  211 (595)
T 1fwx_A          133 AKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVLVSGNLD-NCDADYEGKWAFS  211 (595)
T ss_dssp             CCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEEEETTTTEEEEEEEESSCCC-CEEECSSSSEEEE
T ss_pred             CCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEEEECCCCeEEEEEEeCCCcc-ceEECCCCCEEEE
Confidence            3689999984  65 4678773                  124667777653 3332234557999 99999999 4788


Q ss_pred             EeCCC--------------CeEE-Ec--------cCC-------ceEEecccC--Ccc-------ccccccEEEcCCC-C
Q 026389          133 CDADK--------------GLLK-VT--------EEG-------VTVLASHVN--GSR-------INLADDLIAATDG-S  172 (239)
Q Consensus       133 ~d~~~--------------g~~~-v~--------~~g-------~~~l~~~~~--g~~-------~~~pn~l~vd~dG-~  172 (239)
                      +....              .-+. ++        ++|       +.++ +...  +..       -..|.++.++||| .
T Consensus       212 t~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VI-D~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~  290 (595)
T 1fwx_A          212 TSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVV-DGRKEASSLFTRYIPIANNPHGCNMAPDKKH  290 (595)
T ss_dssp             EESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEE-ECSGGGCCSSEEEEEEESSCCCEEECTTSSE
T ss_pred             EecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEEE-eCcccCCceeEEEEecCCCceEEEEcCCCCE
Confidence            87543              1111 11        122       1111 1111  111       1479999999999 5


Q ss_pred             EEEEeCCCCcCcccccccceeecCCceEEEEeCCCCe------------EEEecCCCCCcceEEEcCCCCEEEEEe
Q 026389          173 IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNE------------TSILLDSLFFANGVALSKDEDYLVVCE  236 (239)
Q Consensus       173 iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~------------~~~~~~~l~~pnGia~s~dg~~lyvad  236 (239)
                      +|+++..                 ..+|..||.++.+            +..-...-..|.+++|++|| ++|++.
T Consensus       291 v~V~~~~-----------------s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~gP~h~aF~~dG-~aY~t~  348 (595)
T 1fwx_A          291 LCVAGKL-----------------SPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHTAFDGRG-NAYTSL  348 (595)
T ss_dssp             EEEECTT-----------------SSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCSCEEEEEECTTS-EEEEEE
T ss_pred             EEEeCCC-----------------CCeEEEEECcccccccccccCcccceEEEcCCCCCcceEEECCCC-eEEEEE
Confidence            8888765                 5788888887442            33333444679999999999 899875

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=98.10  E-value=0.00023  Score=61.95  Aligned_cols=135  Identities=16%  Similarity=0.102  Sum_probs=88.2

Q ss_pred             CcceEEEcCCCCEEEEeCCCeEEEEec-CCcEE-Eeeecc------------------CcCccCeEEcCCCCEEEEeCCC
Q 026389           78 GPEDVCVDRNGVLYTATRDGWIKRLHK-NGTWE-NWKLIG------------------GDTLLGITTTQENEILVCDADK  137 (239)
Q Consensus        78 gPe~ia~d~~G~ly~~~~~g~I~~~~~-~G~~~-~~~~~~------------------~~p~~Gl~~d~~G~L~v~d~~~  137 (239)
                      .-.+++|+++|.++++..++.+..|+. +|+.. .+....                  .... .+++.++|+++++-...
T Consensus        66 ~V~~v~fspdg~~la~g~~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~-~v~~s~dg~~l~s~~~d  144 (393)
T 1erj_A           66 VVCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIR-SVCFSPDGKFLATGAED  144 (393)
T ss_dssp             CCCEEEECTTSSEEEEECBSCEEEEETTTCCEEEEECC-----------------CCCCBEE-EEEECTTSSEEEEEETT
T ss_pred             EEEEEEECCCCCEEEEEcCCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEE-EEEECCCCCEEEEEcCC
Confidence            345789999998776555677777774 45432 111100                  1134 78899999877776667


Q ss_pred             CeEEEc--cCC--ceEEecccCCccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEe
Q 026389          138 GLLKVT--EEG--VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSIL  213 (239)
Q Consensus       138 g~~~v~--~~g--~~~l~~~~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~  213 (239)
                      +.+++.  .++  ...+... .    ...+.+++.++|...++.+.                 .|.|..||..+++....
T Consensus       145 ~~i~iwd~~~~~~~~~~~~h-~----~~v~~~~~~p~~~~l~s~s~-----------------d~~v~iwd~~~~~~~~~  202 (393)
T 1erj_A          145 RLIRIWDIENRKIVMILQGH-E----QDIYSLDYFPSGDKLVSGSG-----------------DRTVRIWDLRTGQCSLT  202 (393)
T ss_dssp             SCEEEEETTTTEEEEEECCC-S----SCEEEEEECTTSSEEEEEET-----------------TSEEEEEETTTTEEEEE
T ss_pred             CeEEEEECCCCcEEEEEccC-C----CCEEEEEEcCCCCEEEEecC-----------------CCcEEEEECCCCeeEEE
Confidence            777775  345  2333211 1    23678999999987776544                 57899999988876554


Q ss_pred             cCCCCCcceEEEcC-CCCEEEEE
Q 026389          214 LDSLFFANGVALSK-DEDYLVVC  235 (239)
Q Consensus       214 ~~~l~~pnGia~s~-dg~~lyva  235 (239)
                      ...-.....++++| ||++|+.+
T Consensus       203 ~~~~~~v~~~~~~~~~~~~l~~~  225 (393)
T 1erj_A          203 LSIEDGVTTVAVSPGDGKYIAAG  225 (393)
T ss_dssp             EECSSCEEEEEECSTTCCEEEEE
T ss_pred             EEcCCCcEEEEEECCCCCEEEEE
Confidence            44444567788988 88876654

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=98.10  E-value=0.00021  Score=61.43  Aligned_cols=136  Identities=12%  Similarity=0.082  Sum_probs=89.8

Q ss_pred             ceEEEcC--CCC-EEEEeCCCeEEEEec-CCcE-EEeeeccCcCccCeEEcCCCCEEEEeCCCCeEEEc--cCC--ceEE
Q 026389           80 EDVCVDR--NGV-LYTATRDGWIKRLHK-NGTW-ENWKLIGGDTLLGITTTQENEILVCDADKGLLKVT--EEG--VTVL  150 (239)
Q Consensus        80 e~ia~d~--~G~-ly~~~~~g~I~~~~~-~G~~-~~~~~~~~~p~~Gl~~d~~G~L~v~d~~~g~~~v~--~~g--~~~l  150 (239)
                      ..+++.+  +|. +++++.||.|..||. +++. ..+........ .+++.++|+++++-...+.+++.  ..+  ...+
T Consensus       200 ~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~-~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~  278 (354)
T 2pbi_B          200 LCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVN-SVRYYPSGDAFASGSDDATCRLYDLRADREVAIY  278 (354)
T ss_dssp             EEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEE-EEEECTTSSEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred             EEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeE-EEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEE
Confidence            4566665  454 567789999999995 4543 33333344556 89999999888777667777775  333  2222


Q ss_pred             ecccCCccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEE-EecCCCCCcceEEEcCCC
Q 026389          151 ASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETS-ILLDSLFFANGVALSKDE  229 (239)
Q Consensus       151 ~~~~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~-~~~~~l~~pnGia~s~dg  229 (239)
                      ..   .........+++.++|++.++...                 .|.|..||..+++.. .+...-...+.++|+|||
T Consensus       279 ~~---~~~~~~~~~~~~s~~g~~l~~g~~-----------------d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg  338 (354)
T 2pbi_B          279 SK---ESIIFGASSVDFSLSGRLLFAGYN-----------------DYTINVWDVLKGSRVSILFGHENRVSTLRVSPDG  338 (354)
T ss_dssp             CC---TTCCSCEEEEEECTTSSEEEEEET-----------------TSCEEEEETTTCSEEEEECCCSSCEEEEEECTTS
T ss_pred             cC---CCcccceeEEEEeCCCCEEEEEEC-----------------CCcEEEEECCCCceEEEEECCCCcEEEEEECCCC
Confidence            21   111223568899999987777544                 478999998666543 333334456889999999


Q ss_pred             CEEEEEe
Q 026389          230 DYLVVCE  236 (239)
Q Consensus       230 ~~lyvad  236 (239)
                      ++|..+.
T Consensus       339 ~~l~sgs  345 (354)
T 2pbi_B          339 TAFCSGS  345 (354)
T ss_dssp             SCEEEEE
T ss_pred             CEEEEEc
Confidence            9876654

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=98.10  E-value=0.00018  Score=61.69  Aligned_cols=140  Identities=11%  Similarity=0.025  Sum_probs=93.1

Q ss_pred             CCcceEEEcCCC-C-EEEEeCCCeEEEEecC-CcEEEeee---ccCcCccCeEEcC-CCCEEEEeCCCCeEEEc-cCC--
Q 026389           77 NGPEDVCVDRNG-V-LYTATRDGWIKRLHKN-GTWENWKL---IGGDTLLGITTTQ-ENEILVCDADKGLLKVT-EEG--  146 (239)
Q Consensus        77 ~gPe~ia~d~~G-~-ly~~~~~g~I~~~~~~-G~~~~~~~---~~~~p~~Gl~~d~-~G~L~v~d~~~g~~~v~-~~g--  146 (239)
                      ..-.+++|+++| . |++++.+|.|..|+.+ ++......   ...... .+++.+ +++++++-...+.+++. ..+  
T Consensus        74 ~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~-~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~  152 (383)
T 3ei3_B           74 RRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAIT-GMKFNQFNTNQLFVSSIRGATTLRDFSGSV  152 (383)
T ss_dssp             SCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEE-EEEEETTEEEEEEEEETTTEEEEEETTSCE
T ss_pred             CCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCcee-EEEeCCCCCCEEEEEeCCCEEEEEECCCCc
Confidence            456678999987 4 5577799999999974 34332222   334455 889988 56666665556777765 333  


Q ss_pred             ceEEecccCCccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecCCCCCcceEEEc
Q 026389          147 VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALS  226 (239)
Q Consensus       147 ~~~l~~~~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~~l~~pnGia~s  226 (239)
                      ...+.... + .-.....+++.++|..+++...                 .|.|..||..+..+..+...-...+.++|+
T Consensus       153 ~~~~~~~~-~-~~~~v~~~~~~~~~~~l~~~~~-----------------d~~i~i~d~~~~~~~~~~~h~~~v~~~~~~  213 (383)
T 3ei3_B          153 IQVFAKTD-S-WDYWYCCVDVSVSRQMLATGDS-----------------TGRLLLLGLDGHEIFKEKLHKAKVTHAEFN  213 (383)
T ss_dssp             EEEEECCC-C-SSCCEEEEEEETTTTEEEEEET-----------------TSEEEEEETTSCEEEEEECSSSCEEEEEEC
T ss_pred             eEEEeccC-C-CCCCeEEEEECCCCCEEEEECC-----------------CCCEEEEECCCCEEEEeccCCCcEEEEEEC
Confidence            44433221 1 1134678999999987666543                 588999999766666665555677899999


Q ss_pred             CCCC-EEEEEe
Q 026389          227 KDED-YLVVCE  236 (239)
Q Consensus       227 ~dg~-~lyvad  236 (239)
                      |+++ .++.+.
T Consensus       214 ~~~~~~l~s~~  224 (383)
T 3ei3_B          214 PRCDWLMATSS  224 (383)
T ss_dssp             SSCTTEEEEEE
T ss_pred             CCCCCEEEEEe
Confidence            9998 665543

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=98.10  E-value=0.00026  Score=59.30  Aligned_cols=136  Identities=10%  Similarity=0.059  Sum_probs=89.1

Q ss_pred             CCcceEEEcCCCCEE-EEeCCCeEEEEecC-CcE-EEeeeccCcCccCeEEcCCCCEEEEeCCCCeEEEc--cCC--ceE
Q 026389           77 NGPEDVCVDRNGVLY-TATRDGWIKRLHKN-GTW-ENWKLIGGDTLLGITTTQENEILVCDADKGLLKVT--EEG--VTV  149 (239)
Q Consensus        77 ~gPe~ia~d~~G~ly-~~~~~g~I~~~~~~-G~~-~~~~~~~~~p~~Gl~~d~~G~L~v~d~~~g~~~v~--~~g--~~~  149 (239)
                      ..-.+++|+|+|.+. +++.+|.|..|+.+ ++. ..+........ .+++.++|+++++-...+.+++.  .++  ...
T Consensus        14 ~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~   92 (304)
T 2ynn_A           14 DRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVR-AGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVD   92 (304)
T ss_dssp             SCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEE-EEEEEGGGTEEEEEETTSEEEEEETTTCCEEEE
T ss_pred             CceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEE-EEEEeCCCCEEEEECCCCEEEEEECCCCcEEEE
Confidence            456789999998755 66799999999964 432 33322223334 78888999877777667877775  355  233


Q ss_pred             EecccCCccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCC-eEEEec-CCCCCcceEEEcC
Q 026389          150 LASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLN-ETSILL-DSLFFANGVALSK  227 (239)
Q Consensus       150 l~~~~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~-~~~~~~-~~l~~pnGia~s~  227 (239)
                      +... .    ...+.+++.|+|.+.++-+.                 .|.|..||..++ ...... ..-...+.++|+|
T Consensus        93 ~~~h-~----~~v~~~~~~~~~~~l~sgs~-----------------D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p  150 (304)
T 2ynn_A           93 FEAH-P----DYIRSIAVHPTKPYVLSGSD-----------------DLTVKLWNWENNWALEQTFEGHEHFVMCVAFNP  150 (304)
T ss_dssp             EECC-S----SCEEEEEECSSSSEEEEEET-----------------TSCEEEEEGGGTTEEEEEECCCCSCEEEEEECT
T ss_pred             EeCC-C----CcEEEEEEcCCCCEEEEECC-----------------CCeEEEEECCCCcchhhhhcccCCcEEEEEECC
Confidence            3211 1    24678999999987777654                 578888887655 333333 3334567899998


Q ss_pred             -CCCEEEEE
Q 026389          228 -DEDYLVVC  235 (239)
Q Consensus       228 -dg~~lyva  235 (239)
                       |++.|+.+
T Consensus       151 ~~~~~l~sg  159 (304)
T 2ynn_A          151 KDPSTFASG  159 (304)
T ss_dssp             TCTTEEEEE
T ss_pred             CCCCEEEEE
Confidence             56665543

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=98.09  E-value=0.00029  Score=59.24  Aligned_cols=142  Identities=14%  Similarity=0.156  Sum_probs=88.1

Q ss_pred             CCcceEEEcCCCCEE-EEeCCCeEEEEec-CCcE-EEeeeccCcCccCeEEcCCCCEEEEeCCCCeEEEc--cCC--ceE
Q 026389           77 NGPEDVCVDRNGVLY-TATRDGWIKRLHK-NGTW-ENWKLIGGDTLLGITTTQENEILVCDADKGLLKVT--EEG--VTV  149 (239)
Q Consensus        77 ~gPe~ia~d~~G~ly-~~~~~g~I~~~~~-~G~~-~~~~~~~~~p~~Gl~~d~~G~L~v~d~~~g~~~v~--~~g--~~~  149 (239)
                      ..-.+++++++|.++ +++.+|.|..|+. +++. ..+........ .+++.++|+++++-...+.+++.  .++  ...
T Consensus        33 ~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~-~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~  111 (369)
T 3zwl_B           33 RPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIW-SIDVDCFTKYCVTGSADYSIKLWDVSNGQCVAT  111 (369)
T ss_dssp             SCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEE-EEEECTTSSEEEEEETTTEEEEEETTTCCEEEE
T ss_pred             ceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEE-EEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEE
Confidence            456789999988755 6678999999985 4543 33333344556 89999999877766666777665  445  333


Q ss_pred             EecccCCccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCe------------EEEec--C
Q 026389          150 LASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNE------------TSILL--D  215 (239)
Q Consensus       150 l~~~~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~------------~~~~~--~  215 (239)
                      +.  . .   .....+++.++|..+++.... .           ....|.|..||..++.            ...+.  .
T Consensus       112 ~~--~-~---~~v~~~~~~~~~~~l~~~~~~-~-----------~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~  173 (369)
T 3zwl_B          112 WK--S-P---VPVKRVEFSPCGNYFLAILDN-V-----------MKNPGSINIYEIERDSATHELTKVSEEPIHKIITHE  173 (369)
T ss_dssp             EE--C-S---SCEEEEEECTTSSEEEEEECC-B-----------TTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCT
T ss_pred             ee--c-C---CCeEEEEEccCCCEEEEecCC-c-----------cCCCCEEEEEEecCCccceeecccccceeeeccCCc
Confidence            32  1 1   246789999999766654331 0           0012566666654321            11111  1


Q ss_pred             CCCCcceEEEcCCCCEEEEEeC
Q 026389          216 SLFFANGVALSKDEDYLVVCET  237 (239)
Q Consensus       216 ~l~~pnGia~s~dg~~lyvadt  237 (239)
                      +......++++++++.|+++..
T Consensus       174 ~~~~~~~~~~~~~~~~l~~~~~  195 (369)
T 3zwl_B          174 GLDAATVAGWSTKGKYIIAGHK  195 (369)
T ss_dssp             TCCCEEEEEECGGGCEEEEEET
T ss_pred             CccceeEEEEcCCCCEEEEEcC
Confidence            2226788999999998877643

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=98.08  E-value=0.00013  Score=62.99  Aligned_cols=139  Identities=12%  Similarity=0.093  Sum_probs=90.0

Q ss_pred             CcceEEEcCCCC-EEEEeCCCeEEEEecCC------cEEEeeeccCcCccCeEEcCC-CCEEEEeCCCCeEEEc--cCCc
Q 026389           78 GPEDVCVDRNGV-LYTATRDGWIKRLHKNG------TWENWKLIGGDTLLGITTTQE-NEILVCDADKGLLKVT--EEGV  147 (239)
Q Consensus        78 gPe~ia~d~~G~-ly~~~~~g~I~~~~~~G------~~~~~~~~~~~p~~Gl~~d~~-G~L~v~d~~~g~~~v~--~~g~  147 (239)
                      ...+++|+++|. |++++.+|.|..|+.+.      ....+........ .+++.++ ++++++-...+.+++.  ..+.
T Consensus        69 ~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~-~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~  147 (416)
T 2pm9_A           69 KFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVK-TVKFNAKQDNVLASGGNNGEIFIWDMNKCT  147 (416)
T ss_dssp             CEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCC-EEEECSSSTTBEEEECSSSCEEBCBTTTTS
T ss_pred             ceEEEEECCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceE-EEEEcCCCCCEEEEEcCCCeEEEEECCCCc
Confidence            456789999886 55677899999998643      2233333344556 8999988 6777766666777765  2222


Q ss_pred             ------eEEec-ccCCccccccccEEEcCC-CCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecCC---
Q 026389          148 ------TVLAS-HVNGSRINLADDLIAATD-GSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDS---  216 (239)
Q Consensus       148 ------~~l~~-~~~g~~~~~pn~l~vd~d-G~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~~---  216 (239)
                            ..+.. ...+ .-.....+++.++ +.++++...                 .|.|..||..+++.......   
T Consensus       148 ~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~-----------------dg~v~iwd~~~~~~~~~~~~~~~  209 (416)
T 2pm9_A          148 ESPSNYTPLTPGQSMS-SVDEVISLAWNQSLAHVFASAGS-----------------SNFASIWDLKAKKEVIHLSYTSP  209 (416)
T ss_dssp             SCTTTCCCBCCCCSCC-SSCCCCEEEECSSCTTEEEEESS-----------------SSCEEEEETTTTEEEEEECCCCC
T ss_pred             cccccccccccccccC-CCCCeeEEEeCCCCCcEEEEEcC-----------------CCCEEEEECCCCCcceEEecccc
Confidence                  22211 1111 1234688999999 577777654                 57899999987776544433   


Q ss_pred             ----CCCcceEEEcCCCC-EEEEE
Q 026389          217 ----LFFANGVALSKDED-YLVVC  235 (239)
Q Consensus       217 ----l~~pnGia~s~dg~-~lyva  235 (239)
                          -...+.++|+|+++ .++++
T Consensus       210 ~~~~~~~v~~~~~~~~~~~~l~~~  233 (416)
T 2pm9_A          210 NSGIKQQLSVVEWHPKNSTRVATA  233 (416)
T ss_dssp             SSCCCCCEEEEEECSSCTTEEEEE
T ss_pred             ccccCCceEEEEECCCCCCEEEEE
Confidence                34578899999984 44443

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=98.06  E-value=0.00043  Score=58.88  Aligned_cols=140  Identities=10%  Similarity=0.113  Sum_probs=86.2

Q ss_pred             CcceEEEcCCCCEE-EEeCCCeEEEEec-CCcE-EEeeeccCcCccCeEEcCCCCEEEEeCCCCeEEEc-cCC-ceEEec
Q 026389           78 GPEDVCVDRNGVLY-TATRDGWIKRLHK-NGTW-ENWKLIGGDTLLGITTTQENEILVCDADKGLLKVT-EEG-VTVLAS  152 (239)
Q Consensus        78 gPe~ia~d~~G~ly-~~~~~g~I~~~~~-~G~~-~~~~~~~~~p~~Gl~~d~~G~L~v~d~~~g~~~v~-~~g-~~~l~~  152 (239)
                      .-.++++++++.+. +++.|+.|..|+. +++. ..+........ .+++.++|+.+++-...+.+++. ..+ ......
T Consensus        78 ~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~-~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~~~~~  156 (343)
T 2xzm_R           78 FVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVY-SVAFSPDNRQILSAGAEREIKLWNILGECKFSSA  156 (343)
T ss_dssp             CEEEEEECSSTTEEEEEETTSEEEEEETTSSCEEEEEECCCSCEE-EEEECSSTTEEEEEETTSCEEEEESSSCEEEECC
T ss_pred             ceEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEE-EEEECCCCCEEEEEcCCCEEEEEeccCCceeeee
Confidence            44678999988755 6679999999996 4543 34433344556 89999999877666556777665 333 221111


Q ss_pred             ccCCccccccccEEEcCCC----------CEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecCCCCCcce
Q 026389          153 HVNGSRINLADDLIAATDG----------SIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANG  222 (239)
Q Consensus       153 ~~~g~~~~~pn~l~vd~dG----------~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~~l~~pnG  222 (239)
                      ...+ .-.....+++.+++          .++++-+                 ..|.|..||........+...-...+.
T Consensus       157 ~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~-----------------~d~~i~iwd~~~~~~~~~~~h~~~v~~  218 (343)
T 2xzm_R          157 EKEN-HSDWVSCVRYSPIMKSANKVQPFAPYFASVG-----------------WDGRLKVWNTNFQIRYTFKAHESNVNH  218 (343)
T ss_dssp             TTTS-CSSCEEEEEECCCCCSCSCCCSSCCEEEEEE-----------------TTSEEEEEETTTEEEEEEECCSSCEEE
T ss_pred             cccC-CCceeeeeeeccccccccccCCCCCEEEEEc-----------------CCCEEEEEcCCCceeEEEcCccccceE
Confidence            1111 11235667777765          3333332                 358899999653333333333445688


Q ss_pred             EEEcCCCCEEEEEe
Q 026389          223 VALSKDEDYLVVCE  236 (239)
Q Consensus       223 ia~s~dg~~lyvad  236 (239)
                      ++|+|||++|..+.
T Consensus       219 ~~~s~~g~~l~sgs  232 (343)
T 2xzm_R          219 LSISPNGKYIATGG  232 (343)
T ss_dssp             EEECTTSSEEEEEE
T ss_pred             EEECCCCCEEEEEc
Confidence            99999999876653

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=98.06  E-value=0.00016  Score=62.02  Aligned_cols=136  Identities=10%  Similarity=0.046  Sum_probs=91.7

Q ss_pred             CcceEEEcC-CCC-EEEEeCCCeEEEEecCCc-EEEeeecc---CcCccCeEEcCCCCEEEEeCCCCeEEEc-cCC--ce
Q 026389           78 GPEDVCVDR-NGV-LYTATRDGWIKRLHKNGT-WENWKLIG---GDTLLGITTTQENEILVCDADKGLLKVT-EEG--VT  148 (239)
Q Consensus        78 gPe~ia~d~-~G~-ly~~~~~g~I~~~~~~G~-~~~~~~~~---~~p~~Gl~~d~~G~L~v~d~~~g~~~v~-~~g--~~  148 (239)
                      .-.+++|.+ ++. |++++.++.|..|+..++ ...+....   .... .+++.++|+++++....+.+++. .++  ..
T Consensus       120 ~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~  198 (383)
T 3ei3_B          120 AITGMKFNQFNTNQLFVSSIRGATTLRDFSGSVIQVFAKTDSWDYWYC-CVDVSVSRQMLATGDSTGRLLLLGLDGHEIF  198 (383)
T ss_dssp             BEEEEEEETTEEEEEEEEETTTEEEEEETTSCEEEEEECCCCSSCCEE-EEEEETTTTEEEEEETTSEEEEEETTSCEEE
T ss_pred             ceeEEEeCCCCCCEEEEEeCCCEEEEEECCCCceEEEeccCCCCCCeE-EEEECCCCCEEEEECCCCCEEEEECCCCEEE
Confidence            455789998 554 557779999999997654 33333222   3345 88899999877766666777765 444  33


Q ss_pred             EEecccCCccccccccEEEcCCCC-EEEEeCCCCcCcccccccceeecCCceEEEEeCCC----CeEEEecCCCCCcceE
Q 026389          149 VLASHVNGSRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSL----NETSILLDSLFFANGV  223 (239)
Q Consensus       149 ~l~~~~~g~~~~~pn~l~vd~dG~-iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~----~~~~~~~~~l~~pnGi  223 (239)
                      .+...     ......+++.++|. ++++.+.                 .|.|..||..+    ++.......-.....+
T Consensus       199 ~~~~h-----~~~v~~~~~~~~~~~~l~s~~~-----------------d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~  256 (383)
T 3ei3_B          199 KEKLH-----KAKVTHAEFNPRCDWLMATSSV-----------------DATVKLWDLRNIKDKNSYIAEMPHEKPVNAA  256 (383)
T ss_dssp             EEECS-----SSCEEEEEECSSCTTEEEEEET-----------------TSEEEEEEGGGCCSTTCEEEEEECSSCEEEE
T ss_pred             EeccC-----CCcEEEEEECCCCCCEEEEEeC-----------------CCEEEEEeCCCCCcccceEEEecCCCceEEE
Confidence            33221     13468899999997 7776544                 47888898875    4444333444567899


Q ss_pred             EEcC-CCCEEEEEe
Q 026389          224 ALSK-DEDYLVVCE  236 (239)
Q Consensus       224 a~s~-dg~~lyvad  236 (239)
                      +|+| ||++|+++.
T Consensus       257 ~~s~~~~~~l~~~~  270 (383)
T 3ei3_B          257 YFNPTDSTKLLTTD  270 (383)
T ss_dssp             EECTTTSCEEEEEE
T ss_pred             EEcCCCCCEEEEEc
Confidence            9999 999887764

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=98.06  E-value=0.00011  Score=63.04  Aligned_cols=135  Identities=12%  Similarity=0.098  Sum_probs=87.6

Q ss_pred             CcceEEEcCCCCEE-EEeCCCeEEEEecC-Cc-EEEeeeccCcCccCeEEcCCCCEEEEeCCCCeEEEc--cCC--ceEE
Q 026389           78 GPEDVCVDRNGVLY-TATRDGWIKRLHKN-GT-WENWKLIGGDTLLGITTTQENEILVCDADKGLLKVT--EEG--VTVL  150 (239)
Q Consensus        78 gPe~ia~d~~G~ly-~~~~~g~I~~~~~~-G~-~~~~~~~~~~p~~Gl~~d~~G~L~v~d~~~g~~~v~--~~g--~~~l  150 (239)
                      ...+++++++|..+ +++.++.|..|+.. ++ ...+........ .+++.++| ++++....+.+++.  .++  ...+
T Consensus       249 ~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~-~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~  326 (425)
T 1r5m_A          249 PISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIV-SASWVGDD-KVISCSMDGSVRLWSLKQNTLLALS  326 (425)
T ss_dssp             CEEEEEEETTTTEEEEEETTSCEEEECSSSBSCSEEECCCSSCEE-EEEEETTT-EEEEEETTSEEEEEETTTTEEEEEE
T ss_pred             ceEEEEECCCCCEEEEEcCCCEEEEEECCCCccceEecCCCccEE-EEEECCCC-EEEEEeCCCcEEEEECCCCcEeEec
Confidence            45678999988654 66689999999853 33 333333344556 88999988 55555556666665  345  2222


Q ss_pred             ecccCCccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCe--------------------E
Q 026389          151 ASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNE--------------------T  210 (239)
Q Consensus       151 ~~~~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~--------------------~  210 (239)
                      ..  ..   .....+++.++|+++++...                 .|.|..||..+++                    .
T Consensus       327 ~~--~~---~~i~~~~~s~~~~~l~~~~~-----------------dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  384 (425)
T 1r5m_A          327 IV--DG---VPIFAGRISQDGQKYAVAFM-----------------DGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPL  384 (425)
T ss_dssp             EC--TT---CCEEEEEECTTSSEEEEEET-----------------TSCEEEEECHHHHC--------------CEECCE
T ss_pred             cc--CC---ccEEEEEEcCCCCEEEEEEC-----------------CCeEEEEECCCCccceeeeecccccccCcccchh
Confidence            21  11   24678999999987776543                 4678888876555                    3


Q ss_pred             -EEecCCCC--CcceEEEcCCCCEEEEEe
Q 026389          211 -SILLDSLF--FANGVALSKDEDYLVVCE  236 (239)
Q Consensus       211 -~~~~~~l~--~pnGia~s~dg~~lyvad  236 (239)
                       ..+.....  ..+.++|++|+++|+++.
T Consensus       385 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~  413 (425)
T 1r5m_A          385 YASYQSSQDNDYIFDLSWNCAGNKISVAY  413 (425)
T ss_dssp             EEEECCTTCCCCEEEEEECTTSSEEEEEE
T ss_pred             hhhhcCcccCCceEEEEccCCCceEEEEe
Confidence             33332222  778999999999887664

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=98.05  E-value=4e-05  Score=71.86  Aligned_cols=129  Identities=7%  Similarity=-0.057  Sum_probs=82.6

Q ss_pred             cceEEEcCCCCEEEEeCCCeEEEEecC-CcEEEeeeccC----cCccCeEEcCCCCEEE-EeCC--------CCeEEE-c
Q 026389           79 PEDVCVDRNGVLYTATRDGWIKRLHKN-GTWENWKLIGG----DTLLGITTTQENEILV-CDAD--------KGLLKV-T  143 (239)
Q Consensus        79 Pe~ia~d~~G~ly~~~~~g~I~~~~~~-G~~~~~~~~~~----~p~~Gl~~d~~G~L~v-~d~~--------~g~~~v-~  143 (239)
                      +.+++|.++|.++....++.|+.++.+ |+.+.+.....    ... .+++.+||+.++ +...        .+.+++ +
T Consensus        18 ~~~~~~s~dg~~~~~~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d   96 (719)
T 1z68_A           18 TFFPNWISGQEYLHQSADNNIVLYNIETGQSYTILSNRTMKSVNAS-NYGLSPDRQFVYLESDYSKLWRYSYTATYYIYD   96 (719)
T ss_dssp             CCCCEESSSSEEEEECTTSCEEEEESSSCCEEEEECHHHHHTTTCS-EEEECTTSSEEEEEEEEEECSSSCEEEEEEEEE
T ss_pred             CCccEECCCCeEEEEcCCCCEEEEEcCCCcEEEEEcccccccccee-eEEECCCCCeEEEEecCceeEEeecceEEEEEE
Confidence            347799999977766689999999974 45444433222    255 789999997433 3221        234444 4


Q ss_pred             -cCC-c---eEEecccCCccccccccEEEcCCC-CEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecCCC
Q 026389          144 -EEG-V---TVLASHVNGSRINLADDLIAATDG-SIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSL  217 (239)
Q Consensus       144 -~~g-~---~~l~~~~~g~~~~~pn~l~vd~dG-~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~~l  217 (239)
                       .+| .   ..+.        .....++++||| .|.++.                   .+.|+.+|.++++...+...-
T Consensus        97 ~~~g~~~~~~~l~--------~~~~~~~~SPDG~~la~~~-------------------~~~i~~~~~~~g~~~~l~~~~  149 (719)
T 1z68_A           97 LSNGEFVRGNELP--------RPIQYLCWSPVGSKLAYVY-------------------QNNIYLKQRPGDPPFQITFNG  149 (719)
T ss_dssp             TTTTEECCSSCCC--------SSBCCEEECSSTTCEEEEE-------------------TTEEEEESSTTSCCEECCCCC
T ss_pred             CCCCccccceecC--------cccccceECCCCCEEEEEE-------------------CCeEEEEeCCCCCcEEEecCC
Confidence             344 3   2221        236789999999 566653                   257999998877765554221


Q ss_pred             -------------------CCcceEEEcCCCCEEEEE
Q 026389          218 -------------------FFANGVALSKDEDYLVVC  235 (239)
Q Consensus       218 -------------------~~pnGia~s~dg~~lyva  235 (239)
                                         ....+++|||||++|+++
T Consensus       150 ~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~  186 (719)
T 1z68_A          150 RENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYA  186 (719)
T ss_dssp             BTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEE
T ss_pred             CcCCeEcccccceeeeecccCcccEEECCCCCEEEEE
Confidence                               122589999999988765

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=98.04  E-value=4.4e-05  Score=67.03  Aligned_cols=128  Identities=16%  Similarity=0.131  Sum_probs=85.1

Q ss_pred             CCcceEEEcCCCCEEEEeCCCeEEEEecCCc-EEEee----------eccCcCccC---eEEcCCC-CEEEEeC---C--
Q 026389           77 NGPEDVCVDRNGVLYTATRDGWIKRLHKNGT-WENWK----------LIGGDTLLG---ITTTQEN-EILVCDA---D--  136 (239)
Q Consensus        77 ~gPe~ia~d~~G~ly~~~~~g~I~~~~~~G~-~~~~~----------~~~~~p~~G---l~~d~~G-~L~v~d~---~--  136 (239)
                      ..|+  +...++.+|+.+. +.|+.+|..+. .+...          ....+|. |   ++++++| ++||+..   +  
T Consensus       214 ~~P~--~~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~-g~~~v~~s~dg~~lyV~~~~~~~~~  289 (368)
T 1mda_H          214 SQAA--QANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSA-GFQMVAKLKNTDGIMILTVEHSRSC  289 (368)
T ss_dssp             SCCE--EETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEEC-SSSCEEEETTTTEEEEEEEECSSCT
T ss_pred             CCcc--ccccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccC-cceeeEEcCCCCEEEEEeccccCcc
Confidence            3565  3333566676666 99999997542 12111          1223566 6   8899887 6999764   2  


Q ss_pred             ----CCeEEEc-cCCceEEecccCCccccccccEEEcCCCC-EEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeE
Q 026389          137 ----KGLLKVT-EEGVTVLASHVNGSRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNET  210 (239)
Q Consensus       137 ----~g~~~v~-~~g~~~l~~~~~g~~~~~pn~l~vd~dG~-iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~  210 (239)
                          .+...+| ..+ +++....-|   ..|+++++++||+ +|++...                ..+.|..+|..++++
T Consensus       290 ~~~~~~~~ViD~~t~-~vv~~i~vg---~~p~gi~~s~Dg~~l~va~~~----------------~~~~VsVID~~t~kv  349 (368)
T 1mda_H          290 LAAAENTSSVTASVG-QTSGPISNG---HDSDAIIAAQDGASDNYANSA----------------GTEVLDIYDAASDQD  349 (368)
T ss_dssp             TSCEEEEEEEESSSC-CEEECCEEE---EEECEEEECCSSSCEEEEEET----------------TTTEEEEEESSSCEE
T ss_pred             cccCCCEEEEECCCC-eEEEEEECC---CCcceEEECCCCCEEEEEccC----------------CCCeEEEEECCCCcE
Confidence                3556666 333 222211112   2599999999995 8998751                148999999999998


Q ss_pred             EEecCCCCCcceEEEcCC
Q 026389          211 SILLDSLFFANGVALSKD  228 (239)
Q Consensus       211 ~~~~~~l~~pnGia~s~d  228 (239)
                      ..-+.....|.||++.++
T Consensus       350 v~~I~vg~~P~~i~~~~~  367 (368)
T 1mda_H          350 QSSVELDKGPESLSVQNE  367 (368)
T ss_dssp             EEECCCCSCCCEEECCCC
T ss_pred             EEEEECCCCCCEEEeecC
Confidence            888888899999998753

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=98.04  E-value=2.5e-05  Score=67.15  Aligned_cols=147  Identities=10%  Similarity=0.048  Sum_probs=83.5

Q ss_pred             cceEEEcC-CCC-EEEEeC------CCeEEEEecCCc-EEEeeecc-C-cCccCeEEcCCCC-E-EEEeCCC--C--eEE
Q 026389           79 PEDVCVDR-NGV-LYTATR------DGWIKRLHKNGT-WENWKLIG-G-DTLLGITTTQENE-I-LVCDADK--G--LLK  141 (239)
Q Consensus        79 Pe~ia~d~-~G~-ly~~~~------~g~I~~~~~~G~-~~~~~~~~-~-~p~~Gl~~d~~G~-L-~v~d~~~--g--~~~  141 (239)
                      ..+++|+| +|. |++...      ..+|+.++.++. .+.+.... + ... ..++.+||+ | |+++...  .  ++.
T Consensus       190 ~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~-~~~~spdg~~l~~~~~~~~~~~~~l~~  268 (388)
T 3pe7_A          190 LGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKTHAEGESCT-HEFWVPDGSALVYVSYLKGSPDRFIYS  268 (388)
T ss_dssp             EEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCCCCTTEEEE-EEEECTTSSCEEEEEEETTCCCEEEEE
T ss_pred             ccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEeeeCCCCcccc-cceECCCCCEEEEEecCCCCCcceEEE
Confidence            45789999 885 433332      348999987654 33332222 1 233 578899996 5 4554322  2  666


Q ss_pred             Ec-cCC-ceEEecccCCc--cccccccEEEcCCC-CEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecCC
Q 026389          142 VT-EEG-VTVLASHVNGS--RINLADDLIAATDG-SIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDS  216 (239)
Q Consensus       142 v~-~~g-~~~l~~~~~g~--~~~~pn~l~vd~dG-~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~~  216 (239)
                      ++ ..| .+.+.. ..+.  ....++++++.||| .|+++.....         -........|+++|.++++.+.+...
T Consensus       269 ~d~~~g~~~~l~~-~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~---------~~~~~~~~~i~~~d~~~~~~~~l~~~  338 (388)
T 3pe7_A          269 ADPETLENRQLTS-MPACSHLMSNYDGSLMVGDGSDAPVDVQDDS---------GYKIENDPFLYVFNMKNGTQHRVARH  338 (388)
T ss_dssp             ECTTTCCEEEEEE-ECCEEEEEECTTSSEEEEEECCC---------------------CCCCEEEEEETTTTEEEEEEEC
T ss_pred             EecCCCceEEEEc-CCCceeeeecCCCCeEccCCCcceeEeeecc---------ccccCCCCEEEEEeccCCceEEeccc
Confidence            67 455 444432 2221  11225667888888 4565432100         00012356899999999888777644


Q ss_pred             CC-----------CcceEEEcCCCCEEEEEe
Q 026389          217 LF-----------FANGVALSKDEDYLVVCE  236 (239)
Q Consensus       217 l~-----------~pnGia~s~dg~~lyvad  236 (239)
                      ..           ....++|+|||++|+++.
T Consensus       339 ~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s  369 (388)
T 3pe7_A          339 DTSWKVFEGDRQVTHPHPSFTPDDKQILFTS  369 (388)
T ss_dssp             CCCCCCBTTBSSTTCCCCEECTTSSEEEEEE
T ss_pred             cCcccccccccccCCCCccCCCCCCEEEEEe
Confidence            33           467789999999887654

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=98.03  E-value=0.00012  Score=62.92  Aligned_cols=134  Identities=16%  Similarity=0.045  Sum_probs=91.6

Q ss_pred             cceEEEcCCCCEEEEeCCCeEEEEecCC-c-EEEeeeccCcCccCeEEcCCCCEEEEeCCCCeEEEc--cCC--ceEEec
Q 026389           79 PEDVCVDRNGVLYTATRDGWIKRLHKNG-T-WENWKLIGGDTLLGITTTQENEILVCDADKGLLKVT--EEG--VTVLAS  152 (239)
Q Consensus        79 Pe~ia~d~~G~ly~~~~~g~I~~~~~~G-~-~~~~~~~~~~p~~Gl~~d~~G~L~v~d~~~g~~~v~--~~g--~~~l~~  152 (239)
                      ..++++.+++.++++..+|.|..|+... + ...+........ .+++.++|+++++....+.+++.  .++  ...+..
T Consensus       209 ~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~-~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~  287 (425)
T 1r5m_A          209 GVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPIS-VLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYG  287 (425)
T ss_dssp             BSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEE-EEEEETTTTEEEEEETTSCEEEECSSSBSCSEEECC
T ss_pred             eeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceE-EEEECCCCCEEEEEcCCCEEEEEECCCCccceEecC
Confidence            6678888888888999999999999643 3 233333334455 88999999876666556666664  344  333321


Q ss_pred             ccCCccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecC-CCCCcceEEEcCCCCE
Q 026389          153 HVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLD-SLFFANGVALSKDEDY  231 (239)
Q Consensus       153 ~~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~-~l~~pnGia~s~dg~~  231 (239)
                      .     -.....+++.++| .+++...                 .|.|..||..+++...... .-.....++++||+++
T Consensus       288 ~-----~~~i~~~~~~~~~-~l~~~~~-----------------d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~  344 (425)
T 1r5m_A          288 H-----SQSIVSASWVGDD-KVISCSM-----------------DGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQK  344 (425)
T ss_dssp             C-----SSCEEEEEEETTT-EEEEEET-----------------TSEEEEEETTTTEEEEEEECTTCCEEEEEECTTSSE
T ss_pred             C-----CccEEEEEECCCC-EEEEEeC-----------------CCcEEEEECCCCcEeEecccCCccEEEEEEcCCCCE
Confidence            1     1246789999999 5555433                 4889999988777654443 3456789999999998


Q ss_pred             EEEEe
Q 026389          232 LVVCE  236 (239)
Q Consensus       232 lyvad  236 (239)
                      |+++.
T Consensus       345 l~~~~  349 (425)
T 1r5m_A          345 YAVAF  349 (425)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            87764

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=98.03  E-value=0.00016  Score=63.82  Aligned_cols=137  Identities=12%  Similarity=0.061  Sum_probs=89.3

Q ss_pred             cceEEEcC-CCC-EEEEeCCCeEEEEecC-CcEEEeee---ccCcCccCeEEcC-CCCEEEEeCCCCeEEEc-c-CC-ce
Q 026389           79 PEDVCVDR-NGV-LYTATRDGWIKRLHKN-GTWENWKL---IGGDTLLGITTTQ-ENEILVCDADKGLLKVT-E-EG-VT  148 (239)
Q Consensus        79 Pe~ia~d~-~G~-ly~~~~~g~I~~~~~~-G~~~~~~~---~~~~p~~Gl~~d~-~G~L~v~d~~~g~~~v~-~-~g-~~  148 (239)
                      -.+|+|.| +++ |.+++.||.|..|+.+ ++......   ..+... +|+|.+ +++++++-+..+.+++. - .+ .+
T Consensus       122 V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~-~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~  200 (435)
T 4e54_B          122 ATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSIT-GLKFNPLNTNQFYASSMEGTTRLQDFKGNILR  200 (435)
T ss_dssp             EEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCC-EEEECSSCTTEEEEECSSSCEEEEETTSCEEE
T ss_pred             EEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEE-EEEEeCCCCCEEEEEeCCCEEEEeeccCCcee
Confidence            46799998 454 5588899999999864 33222221   233455 899986 67777777677888775 3 34 44


Q ss_pred             EEecccCCccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecCCCCCcceEEEcCC
Q 026389          149 VLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKD  228 (239)
Q Consensus       149 ~l~~~~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~~l~~pnGia~s~d  228 (239)
                      .+.... . .......++++++|.++++...                 .|.|..||.+++.+..+...-...+.|+|+|+
T Consensus       201 ~~~~~~-~-~~~~~~~~~~~~~~~~l~~g~~-----------------dg~i~~wd~~~~~~~~~~~h~~~v~~v~~~p~  261 (435)
T 4e54_B          201 VFASSD-T-INIWFCSLDVSASSRMVVTGDN-----------------VGNVILLNMDGKELWNLRMHKKKVTHVALNPC  261 (435)
T ss_dssp             EEECCS-S-CSCCCCCEEEETTTTEEEEECS-----------------SSBEEEEESSSCBCCCSBCCSSCEEEEEECTT
T ss_pred             EEeccC-C-CCccEEEEEECCCCCEEEEEeC-----------------CCcEeeeccCcceeEEEecccceEEeeeecCC
Confidence            443221 1 1123567899999987777654                 58899999876655444333345688999999


Q ss_pred             CCEEEEE
Q 026389          229 EDYLVVC  235 (239)
Q Consensus       229 g~~lyva  235 (239)
                      ++.++++
T Consensus       262 ~~~~~~s  268 (435)
T 4e54_B          262 CDWFLAT  268 (435)
T ss_dssp             CSSEEEE
T ss_pred             CceEEEE
Confidence            8755543

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=98.02  E-value=3.8e-05  Score=72.07  Aligned_cols=155  Identities=11%  Similarity=0.005  Sum_probs=88.1

Q ss_pred             cceEEEcCCCCEEEEeCCCeEEEEecC-C---cEEEeeeccCcCccCeEEcCCCCEEEEeCCCCeEEEc-cCC-ceEEec
Q 026389           79 PEDVCVDRNGVLYTATRDGWIKRLHKN-G---TWENWKLIGGDTLLGITTTQENEILVCDADKGLLKVT-EEG-VTVLAS  152 (239)
Q Consensus        79 Pe~ia~d~~G~ly~~~~~g~I~~~~~~-G---~~~~~~~~~~~p~~Gl~~d~~G~L~v~d~~~g~~~v~-~~g-~~~l~~  152 (239)
                      ..+++|+|||+..+...++.|+.++.+ |   +...+........ .+++.+||+.++......++.++ .+| ...+..
T Consensus       111 v~~~~~SpDg~~l~~~~~~~i~~~d~~~~~~~~~~~l~~~~~~~~-~~~~SPDG~~la~~~~~~i~~~d~~~g~~~~~~~  189 (741)
T 2ecf_A          111 IVDYQWSPDAQRLLFPLGGELYLYDLKQEGKAAVRQLTHGEGFAT-DAKLSPKGGFVSFIRGRNLWVIDLASGRQMQLTA  189 (741)
T ss_dssp             SCCCEECTTSSEEEEEETTEEEEEESSSCSTTSCCBCCCSSSCEE-EEEECTTSSEEEEEETTEEEEEETTTTEEEECCC
T ss_pred             cceeEECCCCCEEEEEeCCcEEEEECCCCCcceEEEcccCCcccc-cccCCCCCCEEEEEeCCcEEEEecCCCCEEEecc
Confidence            357899999975433334999999964 4   4444333345566 89999999744443334555566 345 333322


Q ss_pred             ccCCc------------cccccccEEEcCCC-CEEEEeCCCCcCccccc----------ccce------eecCCceEEEE
Q 026389          153 HVNGS------------RINLADDLIAATDG-SIYFSVASTKFGLHNWG----------LDLL------EAKPHGKLLKY  203 (239)
Q Consensus       153 ~~~g~------------~~~~pn~l~vd~dG-~iy~td~~~~~~~~~~~----------~~~~------e~~~~g~v~~~  203 (239)
                      .....            .+..+.+++++||| .|+++.....- ...+.          ...+      +..+..+|+.+
T Consensus       190 ~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~-~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~  268 (741)
T 2ecf_A          190 DGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESP-VPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVI  268 (741)
T ss_dssp             CCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTT-SCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEE
T ss_pred             CCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCC-CceEecCCCCCCcccceEeecCCCCCCCCeeEEEEE
Confidence            11110            11225789999999 47776322100 00000          0000      00112388999


Q ss_pred             eCCC-CeEEEecC---CCCCcceEEEcCCCCEEEEEe
Q 026389          204 DPSL-NETSILLD---SLFFANGVALSKDEDYLVVCE  236 (239)
Q Consensus       204 d~~~-~~~~~~~~---~l~~pnGia~s~dg~~lyvad  236 (239)
                      |.++ ++.+.+..   .-.....++| |||++|+++.
T Consensus       269 d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~  304 (741)
T 2ecf_A          269 SPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQR  304 (741)
T ss_dssp             CSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEE
T ss_pred             ECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEE
Confidence            9988 77665542   2234578999 9999888654

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=98.01  E-value=8.7e-05  Score=63.70  Aligned_cols=151  Identities=17%  Similarity=0.253  Sum_probs=88.0

Q ss_pred             EEEcCCCC-EEEEe-CCC--eEEEEecC-CcEEEeeeccC-cCccCeEEcCCCC-EEEEeCCCCeEEEc-cCC-ceEEec
Q 026389           82 VCVDRNGV-LYTAT-RDG--WIKRLHKN-GTWENWKLIGG-DTLLGITTTQENE-ILVCDADKGLLKVT-EEG-VTVLAS  152 (239)
Q Consensus        82 ia~d~~G~-ly~~~-~~g--~I~~~~~~-G~~~~~~~~~~-~p~~Gl~~d~~G~-L~v~d~~~g~~~v~-~~g-~~~l~~  152 (239)
                      .+|+|||+ |++.. .+|  +|+.++.+ |+......... ... +.++.+||+ |+++.....++.++ ..| .+.+..
T Consensus        41 ~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~-~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~  119 (388)
T 3pe7_A           41 KCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTF-GGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQ  119 (388)
T ss_dssp             CCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSS-SCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEE
T ss_pred             ccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCcc-ceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeee
Confidence            47899986 55554 355  59999975 44444333222 234 678999995 66666555667777 455 444433


Q ss_pred             ccCCccccccccEEEcCCCCEEEEeCC--CCcC-cccc--cccceeecCCceEEEEeCCCCeEEEecCCCCCcceEEEcC
Q 026389          153 HVNGSRINLADDLIAATDGSIYFSVAS--TKFG-LHNW--GLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSK  227 (239)
Q Consensus       153 ~~~g~~~~~pn~l~vd~dG~iy~td~~--~~~~-~~~~--~~~~~e~~~~g~v~~~d~~~~~~~~~~~~l~~pnGia~s~  227 (239)
                      ...+  ........+++||+.++.-..  ..+. ...+  ...........+|+++|.++++.+.+...-...+.++++|
T Consensus       120 ~~~~--~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~sp  197 (388)
T 3pe7_A          120 VPAE--WVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVILQENQWLGHPIYRP  197 (388)
T ss_dssp             CCTT--EEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEEEEESSCEEEEEEET
T ss_pred             chhh--cccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEEeecCCccccccEECC
Confidence            2111  111112345888976654211  0000 0000  0112223345799999999999888876666678999999


Q ss_pred             -CCCEEEEE
Q 026389          228 -DEDYLVVC  235 (239)
Q Consensus       228 -dg~~lyva  235 (239)
                       ||+.|+++
T Consensus       198 ~dg~~l~~~  206 (388)
T 3pe7_A          198 YDDSTVAFC  206 (388)
T ss_dssp             TEEEEEEEE
T ss_pred             CCCCEEEEE
Confidence             99877544

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=98.00  E-value=0.00021  Score=62.73  Aligned_cols=140  Identities=12%  Similarity=0.135  Sum_probs=91.9

Q ss_pred             CCcceEEEcCCCCEE-EEeCCCeEEEEec-CCcE-EEeeeccCcCccCeEEcCCCCEEEEeCCCCeEEEc-cCCceEEec
Q 026389           77 NGPEDVCVDRNGVLY-TATRDGWIKRLHK-NGTW-ENWKLIGGDTLLGITTTQENEILVCDADKGLLKVT-EEGVTVLAS  152 (239)
Q Consensus        77 ~gPe~ia~d~~G~ly-~~~~~g~I~~~~~-~G~~-~~~~~~~~~p~~Gl~~d~~G~L~v~d~~~g~~~v~-~~g~~~l~~  152 (239)
                      ..-.+++|++++.++ +++.||.|..|+. +|+. ..+........ .++++++|+++++-...+.+++. ..+.+.+..
T Consensus       109 ~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~-~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~  187 (410)
T 1vyh_C          109 SPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQ-DISFDHSGKLLASCSADMTIKLWDFQGFECIRT  187 (410)
T ss_dssp             SCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEE-EEEECTTSSEEEEEETTSCCCEEETTSSCEEEC
T ss_pred             CcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEE-EEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEE
Confidence            345678999988755 6679999999995 4543 33333334456 89999999887776666777665 332111111


Q ss_pred             ccCCccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEE-ecCCCCCcceEEEcCCCCE
Q 026389          153 HVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSI-LLDSLFFANGVALSKDEDY  231 (239)
Q Consensus       153 ~~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~-~~~~l~~pnGia~s~dg~~  231 (239)
                       ..+.. .....+++.++|..+++.+.                 .+.|..||..+++... +...-...+.+++++||++
T Consensus       188 -~~~h~-~~V~~v~~~p~~~~l~s~s~-----------------D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~  248 (410)
T 1vyh_C          188 -MHGHD-HNVSSVSIMPNGDHIVSASR-----------------DKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTL  248 (410)
T ss_dssp             -CCCCS-SCEEEEEECSSSSEEEEEET-----------------TSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSE
T ss_pred             -EcCCC-CCEEEEEEeCCCCEEEEEeC-----------------CCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCE
Confidence             11211 24678999999987777554                 5789999988776433 3333345677889999987


Q ss_pred             EEEEe
Q 026389          232 LVVCE  236 (239)
Q Consensus       232 lyvad  236 (239)
                      |+.+.
T Consensus       249 l~s~s  253 (410)
T 1vyh_C          249 IASCS  253 (410)
T ss_dssp             EEEEE
T ss_pred             EEEEc
Confidence            76553

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=97.99  E-value=0.00036  Score=57.45  Aligned_cols=131  Identities=14%  Similarity=0.157  Sum_probs=83.6

Q ss_pred             CcceEEEcC-CCC-EEEEeCCCeEEEEecCCcEEEeee-ccCcCccCeEEcCCCCEEEEeCCCCeEEE-c-cCC--ceEE
Q 026389           78 GPEDVCVDR-NGV-LYTATRDGWIKRLHKNGTWENWKL-IGGDTLLGITTTQENEILVCDADKGLLKV-T-EEG--VTVL  150 (239)
Q Consensus        78 gPe~ia~d~-~G~-ly~~~~~g~I~~~~~~G~~~~~~~-~~~~p~~Gl~~d~~G~L~v~d~~~g~~~v-~-~~g--~~~l  150 (239)
                      ...++++.+ ++. +++++.+|.|..|+.......+.. ...... .+++.++++++++.. .+.+++ + .++  ...+
T Consensus       144 ~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~~~-dg~i~i~d~~~~~~~~~~  221 (313)
T 3odt_A          144 SVWDAKVVSFSENKFLTASADKTIKLWQNDKVIKTFSGIHNDVVR-HLAVVDDGHFISCSN-DGLIKLVDMHTGDVLRTY  221 (313)
T ss_dssp             CEEEEEEEETTTTEEEEEETTSCEEEEETTEEEEEECSSCSSCEE-EEEEEETTEEEEEET-TSEEEEEETTTCCEEEEE
T ss_pred             ceeEEEEccCCCCEEEEEECCCCEEEEecCceEEEEeccCcccEE-EEEEcCCCeEEEccC-CCeEEEEECCchhhhhhh
Confidence            344567766 554 556778999999984333344333 334455 788988888555554 555555 4 445  3333


Q ss_pred             ecccCCccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEec-CCCCCcceEEEcCCC
Q 026389          151 ASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILL-DSLFFANGVALSKDE  229 (239)
Q Consensus       151 ~~~~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~-~~l~~pnGia~s~dg  229 (239)
                      ... .    ...+.+++.++|.++.+..                  .|.|..||..+++..... ..-.....+++++|+
T Consensus       222 ~~~-~----~~i~~~~~~~~~~l~~~~~------------------dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~  278 (313)
T 3odt_A          222 EGH-E----SFVYCIKLLPNGDIVSCGE------------------DRTVRIWSKENGSLKQVITLPAISIWSVDCMSNG  278 (313)
T ss_dssp             ECC-S----SCEEEEEECTTSCEEEEET------------------TSEEEEECTTTCCEEEEEECSSSCEEEEEECTTS
T ss_pred             hcC-C----ceEEEEEEecCCCEEEEec------------------CCEEEEEECCCCceeEEEeccCceEEEEEEccCC
Confidence            211 1    2467899999997665543                  488999998877654443 333456889999999


Q ss_pred             CEEE
Q 026389          230 DYLV  233 (239)
Q Consensus       230 ~~ly  233 (239)
                      +++.
T Consensus       279 ~~~~  282 (313)
T 3odt_A          279 DIIV  282 (313)
T ss_dssp             CEEE
T ss_pred             CEEE
Confidence            8443

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=97.98  E-value=0.00014  Score=64.45  Aligned_cols=136  Identities=14%  Similarity=0.190  Sum_probs=85.3

Q ss_pred             ceEEEcCCCCEEEEeCCCeEEEEec-CCc----EEEeeecc---------------------------------------
Q 026389           80 EDVCVDRNGVLYTATRDGWIKRLHK-NGT----WENWKLIG---------------------------------------  115 (239)
Q Consensus        80 e~ia~d~~G~ly~~~~~g~I~~~~~-~G~----~~~~~~~~---------------------------------------  115 (239)
                      ..++++++|++.++..++.|..|+. +|+    ...|....                                       
T Consensus         8 ~~v~~s~dg~~l~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (450)
T 2vdu_B            8 QNLLTSRDGSLVFAIIKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDSIKRT   87 (450)
T ss_dssp             CEEEECSSSSEEEEEETTEEEEEEEETTTEEEEEEEEECCC---------------------------------------
T ss_pred             EEEEecCCCCEEEEEeCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCcccccc
Confidence            4678999999777777889999884 565    22222100                                       


Q ss_pred             ---------------CcCccCeEEcCCCCE-EEEeCCCCeEEEc--c--CC--ceEEecccCCccccccccEEEcCCCCE
Q 026389          116 ---------------GDTLLGITTTQENEI-LVCDADKGLLKVT--E--EG--VTVLASHVNGSRINLADDLIAATDGSI  173 (239)
Q Consensus       116 ---------------~~p~~Gl~~d~~G~L-~v~d~~~g~~~v~--~--~g--~~~l~~~~~g~~~~~pn~l~vd~dG~i  173 (239)
                                     +... .+++.++|+. +++....|.+++.  .  ++  ...+......   ..++.++++++|..
T Consensus        88 ~~~~~~~~~~~~~~~~~v~-~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~---~~v~~~~~sp~~~~  163 (450)
T 2vdu_B           88 AAKVPSPGLGAPPIYSYIR-NLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFS---KRPNAISIAEDDTT  163 (450)
T ss_dssp             ------------CCCCCEE-EEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECS---SCEEEEEECTTSSE
T ss_pred             CccccCCCCCCCccCCceE-EEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCC---CCceEEEEcCCCCE
Confidence                           0245 7899999976 4665556766664  3  45  3433221111   34689999999965


Q ss_pred             EEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEE-----EecCCCCCcceEEEcCC---CCEEEEEe
Q 026389          174 YFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETS-----ILLDSLFFANGVALSKD---EDYLVVCE  236 (239)
Q Consensus       174 y~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~-----~~~~~l~~pnGia~s~d---g~~lyvad  236 (239)
                      +++...                 .|.++.|+..+++..     .+.......+.++|+||   +++|+.+.
T Consensus       164 l~~~~~-----------------~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~  217 (450)
T 2vdu_B          164 VIIADK-----------------FGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSD  217 (450)
T ss_dssp             EEEEET-----------------TSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEE
T ss_pred             EEEEeC-----------------CCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEc
Confidence            554332                 478999987655432     12222345678999999   88777654

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=97.98  E-value=0.00071  Score=56.84  Aligned_cols=146  Identities=11%  Similarity=0.118  Sum_probs=93.9

Q ss_pred             ceEeccCCcCCcceEEEcCC---C--CEEEEeCCCeEEEEecC-Cc-EEEeee-----ccCcCccCeEEcCC----CCEE
Q 026389           68 VTRLGEGILNGPEDVCVDRN---G--VLYTATRDGWIKRLHKN-GT-WENWKL-----IGGDTLLGITTTQE----NEIL  131 (239)
Q Consensus        68 ~~~l~~g~~~gPe~ia~d~~---G--~ly~~~~~g~I~~~~~~-G~-~~~~~~-----~~~~p~~Gl~~d~~----G~L~  131 (239)
                      .+.+..+--..-.++++.|+   +  .++++..+++|..|+.. ++ ...+..     ...... .+++.++    |+++
T Consensus        10 ~~~~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~~~~l   88 (366)
T 3k26_A           10 VNSLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFY-TCAWTYDSNTSHPLL   88 (366)
T ss_dssp             EEEEECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEE-EEEEEECTTTCCEEE
T ss_pred             EEEeecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEE-EEEeccCCCCCCCEE
Confidence            34455444455678899973   3  36677778888888864 33 333321     123345 7888877    5566


Q ss_pred             EEeCCCCeEEEc--cCC--ceEEecccCCccccccccEEEcC-CCCEEEEeCCCCcCcccccccceeecCCceEEEEeCC
Q 026389          132 VCDADKGLLKVT--EEG--VTVLASHVNGSRINLADDLIAAT-DGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPS  206 (239)
Q Consensus       132 v~d~~~g~~~v~--~~g--~~~l~~~~~g~~~~~pn~l~vd~-dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~  206 (239)
                      ++-...|.+++.  .++  ...+...     -...+.+++.+ +|.++++-..                 .|.|..||..
T Consensus        89 ~~~~~dg~i~v~d~~~~~~~~~~~~~-----~~~i~~~~~~~~~~~~l~s~~~-----------------dg~i~iwd~~  146 (366)
T 3k26_A           89 AVAGSRGIIRIINPITMQCIKHYVGH-----GNAINELKFHPRDPNLLLSVSK-----------------DHALRLWNIQ  146 (366)
T ss_dssp             EEEETTCEEEEECTTTCCEEEEEESC-----CSCEEEEEECSSCTTEEEEEET-----------------TSCEEEEETT
T ss_pred             EEecCCCEEEEEEchhceEeeeecCC-----CCcEEEEEECCCCCCEEEEEeC-----------------CCeEEEEEee
Confidence            665556777765  344  3333211     13468899999 8887776543                 5789999998


Q ss_pred             CCeEEEec----CCCCCcceEEEcCCCCEEEEEe
Q 026389          207 LNETSILL----DSLFFANGVALSKDEDYLVVCE  236 (239)
Q Consensus       207 ~~~~~~~~----~~l~~pnGia~s~dg~~lyvad  236 (239)
                      +++.....    ..-.....++++|++++|+.+.
T Consensus       147 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  180 (366)
T 3k26_A          147 TDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCG  180 (366)
T ss_dssp             TTEEEEEECSTTSCSSCEEEEEECTTSSEEEEEE
T ss_pred             cCeEEEEecccccccCceeEEEECCCCCEEEEec
Confidence            77765554    2345678899999999887664

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=97.96  E-value=0.0006  Score=58.91  Aligned_cols=143  Identities=13%  Similarity=0.119  Sum_probs=89.7

Q ss_pred             cCCcceEEEcCCCC-EEEEeCCCeEEEEecC-Cc-EEEeeeccCcCccCeEEcCCCCEEEEeCCCCeEEEc--cCC--ce
Q 026389           76 LNGPEDVCVDRNGV-LYTATRDGWIKRLHKN-GT-WENWKLIGGDTLLGITTTQENEILVCDADKGLLKVT--EEG--VT  148 (239)
Q Consensus        76 ~~gPe~ia~d~~G~-ly~~~~~g~I~~~~~~-G~-~~~~~~~~~~p~~Gl~~d~~G~L~v~d~~~g~~~v~--~~g--~~  148 (239)
                      -..-.+++|+++|. |++++.++.|..|+.. ++ ...+........ .+++.++|+++++-...+.+++.  ..+  ..
T Consensus       139 ~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~-~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~  217 (420)
T 3vl1_A          139 VSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVT-DIAIIDRGRNVLSASLDGTIRLWECGTGTTIH  217 (420)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEE-EEEEETTTTEEEEEETTSCEEEEETTTTEEEE
T ss_pred             cCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEE-EEEEcCCCCEEEEEcCCCcEEEeECCCCceeE
Confidence            34566799999886 4567799999999963 43 344443445556 89999999877666556666664  345  33


Q ss_pred             EEecccCC-c------------------cccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCe
Q 026389          149 VLASHVNG-S------------------RINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNE  209 (239)
Q Consensus       149 ~l~~~~~g-~------------------~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~  209 (239)
                      .+...... .                  .....+.++++++|+..++...                 .|.|..||..+++
T Consensus       218 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-----------------dg~i~i~d~~~~~  280 (420)
T 3vl1_A          218 TFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHV-----------------SGVITVHNVFSKE  280 (420)
T ss_dssp             EECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEET-----------------TSCEEEEETTTCC
T ss_pred             EeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcC-----------------CCeEEEEECCCCc
Confidence            33211000 0                  0123455666788865555433                 5889999987766


Q ss_pred             EEEec-CC-CCCcceEEEcCCCC-EEEEEe
Q 026389          210 TSILL-DS-LFFANGVALSKDED-YLVVCE  236 (239)
Q Consensus       210 ~~~~~-~~-l~~pnGia~s~dg~-~lyvad  236 (239)
                      ..... .. -...+.++++|+++ +|+.+.
T Consensus       281 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~  310 (420)
T 3vl1_A          281 QTIQLPSKFTCSCNSLTVDGNNANYIYAGY  310 (420)
T ss_dssp             EEEEECCTTSSCEEEEEECSSCTTEEEEEE
T ss_pred             eeEEcccccCCCceeEEEeCCCCCEEEEEe
Confidence            43333 22 34568899999998 766654

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=97.96  E-value=6.9e-05  Score=68.61  Aligned_cols=133  Identities=13%  Similarity=0.126  Sum_probs=79.5

Q ss_pred             CcceEEEcCCC--CEEEEeCCCeEEEEec-CCcEEEeeeccCcCccCeEEcCCCCEEEE-eCC----CCeEEEc-cCC-c
Q 026389           78 GPEDVCVDRNG--VLYTATRDGWIKRLHK-NGTWENWKLIGGDTLLGITTTQENEILVC-DAD----KGLLKVT-EEG-V  147 (239)
Q Consensus        78 gPe~ia~d~~G--~ly~~~~~g~I~~~~~-~G~~~~~~~~~~~p~~Gl~~d~~G~L~v~-d~~----~g~~~v~-~~g-~  147 (239)
                      +....++.++|  .+|++..++.+..|+. +|+.+.+.....  . .+++++||+.++. ...    ..++.++ .+| .
T Consensus       111 ~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~--~-~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~  187 (582)
T 3o4h_A          111 PMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPG--F-GFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGL  187 (582)
T ss_dssp             SBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESS--C-EEEEEEETTEEEEEEEEETTEEEEEEEETTTCCC
T ss_pred             CceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCC--c-eEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCc
Confidence            34455666665  4566666666667775 455544443333  6 8899999976553 221    2345556 456 5


Q ss_pred             eEEecccCCccccccccEEEcCCCCEEEE-eCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecCCC-CCcceEE-
Q 026389          148 TVLASHVNGSRINLADDLIAATDGSIYFS-VASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSL-FFANGVA-  224 (239)
Q Consensus       148 ~~l~~~~~g~~~~~pn~l~vd~dG~iy~t-d~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~~l-~~pnGia-  224 (239)
                      +.+... .    ...+.++++|||+.+++ +..                +..+|+++|.++++.+ +..+. ..+.+++ 
T Consensus       188 ~~l~~~-~----~~~~~~~~SpDG~~l~~~~~~----------------~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~  245 (582)
T 3o4h_A          188 RVFDSG-E----GSFSSASISPGMKVTAGLETA----------------REARLVTVDPRDGSVE-DLELPSKDFSSYRP  245 (582)
T ss_dssp             EEECCS-S----CEEEEEEECTTSCEEEEEECS----------------SCEEEEEECTTTCCEE-ECCCSCSHHHHHCC
T ss_pred             eEeecC-C----CccccceECCCCCEEEEccCC----------------CeeEEEEEcCCCCcEE-EccCCCcChhhhhh
Confidence            555322 1    23478999999964443 322                1238999999988887 54432 2344566 


Q ss_pred             -------EcCCCCEEEEE
Q 026389          225 -------LSKDEDYLVVC  235 (239)
Q Consensus       225 -------~s~dg~~lyva  235 (239)
                             |+|||+.++.+
T Consensus       246 ~~~~~~~~spdg~~~~~~  263 (582)
T 3o4h_A          246 TAITWLGYLPDGRLAVVA  263 (582)
T ss_dssp             SEEEEEEECTTSCEEEEE
T ss_pred             ccccceeEcCCCcEEEEE
Confidence                   99999544433

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=97.95  E-value=0.00014  Score=67.44  Aligned_cols=137  Identities=14%  Similarity=0.048  Sum_probs=85.2

Q ss_pred             cceEEEcCCCC-EEEEeCC----------CeEEEEecCC-------cEEEee-eccCcCccCeEEcCCCC-EEEEeCCC-
Q 026389           79 PEDVCVDRNGV-LYTATRD----------GWIKRLHKNG-------TWENWK-LIGGDTLLGITTTQENE-ILVCDADK-  137 (239)
Q Consensus        79 Pe~ia~d~~G~-ly~~~~~----------g~I~~~~~~G-------~~~~~~-~~~~~p~~Gl~~d~~G~-L~v~d~~~-  137 (239)
                      ..+++|++||+ |+++..+          .+|++++.++       +.+.+. ....... .+++.+||+ |+++.... 
T Consensus       132 ~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~SpDG~~la~~~~~~~  210 (662)
T 3azo_A          132 WADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVRELSDDAHRFVT-GPRLSPDGRQAVWLAWDHP  210 (662)
T ss_dssp             EEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSEESSCSCSSEEC-CCEECTTSSEEEEEEECTT
T ss_pred             ccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCceeEEEecCCCccc-CceECCCCCEEEEEECCCC
Confidence            45789999986 5555433          5899999765       445444 3334556 889999996 54444221 


Q ss_pred             -------CeEEEc-c-CC-c---eEEecccCCccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEe
Q 026389          138 -------GLLKVT-E-EG-V---TVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYD  204 (239)
Q Consensus       138 -------g~~~v~-~-~g-~---~~l~~~~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d  204 (239)
                             .++.++ . +| .   +.+....    -.....+++.+||++||+....               +..+|+++|
T Consensus       211 ~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~----~~~~~~~~~spdg~l~~~~~~~---------------~~~~l~~~~  271 (662)
T 3azo_A          211 RMPWEGTELKTARVTEDGRFADTRTLLGGP----EEAIAQAEWAPDGSLIVATDRT---------------GWWNLHRVD  271 (662)
T ss_dssp             CCTTTCEEEEEEEECTTSCEEEEEEEEEET----TBCEEEEEECTTSCEEEEECTT---------------SSCEEEEEC
T ss_pred             CCCCCCcEEEEEEECCCCcccccEEeCCCC----CceEcceEECCCCeEEEEECCC---------------CCeEEEEEE
Confidence                   344445 3 34 1   2222211    1235678999999988876441               124899999


Q ss_pred             CCCCeEEEecCCCC---C------cceEEEcCCCCEEEEE
Q 026389          205 PSLNETSILLDSLF---F------ANGVALSKDEDYLVVC  235 (239)
Q Consensus       205 ~~~~~~~~~~~~l~---~------pnGia~s~dg~~lyva  235 (239)
                      .++++.+.+...-.   .      ...+++++|++.+|.+
T Consensus       272 ~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~  311 (662)
T 3azo_A          272 PATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVH  311 (662)
T ss_dssp             TTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEE
T ss_pred             CCCCceeecccccccccCccccccCceEeEeCCCEEEEEE
Confidence            98788776654211   1      3578999999876654

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=97.94  E-value=0.00077  Score=57.84  Aligned_cols=135  Identities=16%  Similarity=0.179  Sum_probs=87.0

Q ss_pred             cceEEEcCCC-CEEEEeCCCeEEEEec-CCcE-EEeeeccCcCccCeEEcC--CCCEEEEeCCCCeEEEc--cCC--ceE
Q 026389           79 PEDVCVDRNG-VLYTATRDGWIKRLHK-NGTW-ENWKLIGGDTLLGITTTQ--ENEILVCDADKGLLKVT--EEG--VTV  149 (239)
Q Consensus        79 Pe~ia~d~~G-~ly~~~~~g~I~~~~~-~G~~-~~~~~~~~~p~~Gl~~d~--~G~L~v~d~~~g~~~v~--~~g--~~~  149 (239)
                      -.+++|.+++ .|++++.|+.|..||. +++. ..+........ .+.+.+  +|+++++-...+.+++.  ..+  ...
T Consensus       157 v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~-~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~  235 (354)
T 2pbi_B          157 LSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVL-CLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQA  235 (354)
T ss_dssp             EEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEE-EEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEE
T ss_pred             EEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeE-EEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEE
Confidence            3568888877 4667889999999996 4543 33333333344 566654  56666665556666664  455  333


Q ss_pred             EecccCCccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecCC---CCCcceEEEc
Q 026389          150 LASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDS---LFFANGVALS  226 (239)
Q Consensus       150 l~~~~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~~---l~~pnGia~s  226 (239)
                      +...     -...+.+++.|+|..+++-+.                 .|.|..||..+++.......   ......++|+
T Consensus       236 ~~~h-----~~~v~~v~~~p~~~~l~s~s~-----------------D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s  293 (354)
T 2pbi_B          236 FETH-----ESDVNSVRYYPSGDAFASGSD-----------------DATCRLYDLRADREVAIYSKESIIFGASSVDFS  293 (354)
T ss_dssp             ECCC-----SSCEEEEEECTTSSEEEEEET-----------------TSCEEEEETTTTEEEEEECCTTCCSCEEEEEEC
T ss_pred             ecCC-----CCCeEEEEEeCCCCEEEEEeC-----------------CCeEEEEECCCCcEEEEEcCCCcccceeEEEEe
Confidence            3211     124688999999987777654                 57888899876654333322   2345789999


Q ss_pred             CCCCEEEEEe
Q 026389          227 KDEDYLVVCE  236 (239)
Q Consensus       227 ~dg~~lyvad  236 (239)
                      ++|++|+++.
T Consensus       294 ~~g~~l~~g~  303 (354)
T 2pbi_B          294 LSGRLLFAGY  303 (354)
T ss_dssp             TTSSEEEEEE
T ss_pred             CCCCEEEEEE
Confidence            9999887653

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=97.93  E-value=0.00023  Score=65.81  Aligned_cols=139  Identities=7%  Similarity=0.059  Sum_probs=87.4

Q ss_pred             CcceEEEcCCCCEE-EEeCCCeEEEEecCC-cEEEe--eeccCcCccCeEEcCCCCEEEEeCCCCeEEEc--cCCceEEe
Q 026389           78 GPEDVCVDRNGVLY-TATRDGWIKRLHKNG-TWENW--KLIGGDTLLGITTTQENEILVCDADKGLLKVT--EEGVTVLA  151 (239)
Q Consensus        78 gPe~ia~d~~G~ly-~~~~~g~I~~~~~~G-~~~~~--~~~~~~p~~Gl~~d~~G~L~v~d~~~g~~~v~--~~g~~~l~  151 (239)
                      ...+++++|+|.++ +++.+++|..|+.++ +....  ........ .++|.++|+++++....+.+++.  .++.+.+.
T Consensus       450 ~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~~~~~h~~~v~-~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~  528 (611)
T 1nr0_A          450 NSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEIT-SVAFSNNGAFLVATDQSRKVIPYSVANNFELAH  528 (611)
T ss_dssp             CEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEE-EEEECTTSSEEEEEETTSCEEEEEGGGTTEESC
T ss_pred             CceEEEEeCCCCEEEEeCCCCeEEEEEccCCceeeeeccCCCCceE-EEEECCCCCEEEEEcCCCCEEEEEcCCCCceee
Confidence            45679999998766 667999999998644 33211  22334556 89999999877776556666654  33212211


Q ss_pred             cccCCccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCe-EE-EecCC--CCCcceEEEcC
Q 026389          152 SHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNE-TS-ILLDS--LFFANGVALSK  227 (239)
Q Consensus       152 ~~~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~-~~-~~~~~--l~~pnGia~s~  227 (239)
                      ....+.--...+.+++.|||+..+|-+.                 .+.|..||.++++ .. ....+  ....+.++|+|
T Consensus       529 ~~~~~~H~~~V~~v~fspdg~~lasgs~-----------------D~~v~lW~~~~~~~~~~~~~~~h~~~~v~~v~fs~  591 (611)
T 1nr0_A          529 TNSWTFHTAKVACVSWSPDNVRLATGSL-----------------DNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLN  591 (611)
T ss_dssp             CCCCCCCSSCEEEEEECTTSSEEEEEET-----------------TSCEEEEETTCTTSCCEEETTSSTTSCEEEEEEEE
T ss_pred             eeeeeecccceeEEEECCCCCEEEEEEC-----------------CCcEEEEECCCcccccchhhccCcccCeeEEEEcC
Confidence            1011101134689999999988777654                 4778888876543 21 23322  34568899999


Q ss_pred             CCCEEEEE
Q 026389          228 DEDYLVVC  235 (239)
Q Consensus       228 dg~~lyva  235 (239)
                      |++ |+.+
T Consensus       592 d~~-l~s~  598 (611)
T 1nr0_A          592 ETT-IVSA  598 (611)
T ss_dssp             TTE-EEEE
T ss_pred             CCE-EEEe
Confidence            997 5443

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=97.92  E-value=0.00037  Score=61.62  Aligned_cols=137  Identities=10%  Similarity=0.141  Sum_probs=89.1

Q ss_pred             CCcceEEEcCCCC-EEEEeCCCeEEEEec-CCcEE-----EeeeccCcCccCeEEcCC---CCEEEEeCCCCeEEEc--c
Q 026389           77 NGPEDVCVDRNGV-LYTATRDGWIKRLHK-NGTWE-----NWKLIGGDTLLGITTTQE---NEILVCDADKGLLKVT--E  144 (239)
Q Consensus        77 ~gPe~ia~d~~G~-ly~~~~~g~I~~~~~-~G~~~-----~~~~~~~~p~~Gl~~d~~---G~L~v~d~~~g~~~v~--~  144 (239)
                      ..+.+++|+++|. |++++.+|.|+.|+. +++..     .+........ .+++.++   |+++++-...+.+++.  .
T Consensus       150 ~~v~~~~~sp~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~-~~~~sp~~~~~~~l~s~~~d~~i~vwd~~  228 (450)
T 2vdu_B          150 KRPNAISIAEDDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLT-DVHLIKDSDGHQFIITSDRDEHIKISHYP  228 (450)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEE-EEEEEECTTSCEEEEEEETTSCEEEEEES
T ss_pred             CCceEEEEcCCCCEEEEEeCCCcEEEEecCCcccccccceeeecccCceE-EEEEcCCCCCCcEEEEEcCCCcEEEEECC
Confidence            4567899999886 557779999999985 33221     2233344556 8899998   8666655455666654  4


Q ss_pred             CC--ceEEecccCCccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecCC------
Q 026389          145 EG--VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDS------  216 (239)
Q Consensus       145 ~g--~~~l~~~~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~~------  216 (239)
                      .+  ...+..   +. -...+.+++. +|.++++.+.                 .|.|..||..+++.......      
T Consensus       229 ~~~~~~~~~~---~h-~~~v~~~~~s-d~~~l~s~~~-----------------d~~v~vwd~~~~~~~~~~~~~~~~~~  286 (450)
T 2vdu_B          229 QCFIVDKWLF---GH-KHFVSSICCG-KDYLLLSAGG-----------------DDKIFAWDWKTGKNLSTFDYNSLIKP  286 (450)
T ss_dssp             CTTCEEEECC---CC-SSCEEEEEEC-STTEEEEEES-----------------SSEEEEEETTTCCEEEEEECHHHHGG
T ss_pred             CCceeeeeec---CC-CCceEEEEEC-CCCEEEEEeC-----------------CCeEEEEECCCCcEeeeecchhhhhh
Confidence            45  333221   11 1346889999 9987776543                 57899999887764333220      


Q ss_pred             --------------------CCCcceEEEcCCCCEEEEEe
Q 026389          217 --------------------LFFANGVALSKDEDYLVVCE  236 (239)
Q Consensus       217 --------------------l~~pnGia~s~dg~~lyvad  236 (239)
                                          -....+|+++||+++|+++-
T Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~  326 (450)
T 2vdu_B          287 YLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFV  326 (450)
T ss_dssp             GCCTTSBC----------CBCCCEEEEEECSSSSEEEEEE
T ss_pred             hhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEE
Confidence                                12346899999999998874

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=97.90  E-value=0.00063  Score=59.20  Aligned_cols=141  Identities=11%  Similarity=-0.014  Sum_probs=88.9

Q ss_pred             CcceEEEcCCC-CE-EEEeCCCeEEEEec-CCc-----EEEeeeccC------------cCccCeEEcCCCCEEEEeCCC
Q 026389           78 GPEDVCVDRNG-VL-YTATRDGWIKRLHK-NGT-----WENWKLIGG------------DTLLGITTTQENEILVCDADK  137 (239)
Q Consensus        78 gPe~ia~d~~G-~l-y~~~~~g~I~~~~~-~G~-----~~~~~~~~~------------~p~~Gl~~d~~G~L~v~d~~~  137 (239)
                      ...+++|+++| .+ ++++.+|.|..||. .++     ...+.....            ... .+++.++|+++++-.. 
T Consensus       228 ~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~s~~g~~l~~~~~-  305 (447)
T 3dw8_B          228 VITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSIS-DVKFSHSGRYMMTRDY-  305 (447)
T ss_dssp             CEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEE-EEEECTTSSEEEEEES-
T ss_pred             ceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccceeeEeccCCCccccccccccCceEE-EEEECCCCCEEEEeeC-
Confidence            45679999987 54 46779999999995 333     244433222            455 8999999987777665 


Q ss_pred             CeEEEc--cC-C--ceEEecccC----------CccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEE
Q 026389          138 GLLKVT--EE-G--VTVLASHVN----------GSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLK  202 (239)
Q Consensus       138 g~~~v~--~~-g--~~~l~~~~~----------g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~  202 (239)
                      +.+++.  .. +  ...+.....          ...+.....++++++|..+++-+.                 .|.|..
T Consensus       306 ~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~-----------------dg~v~i  368 (447)
T 3dw8_B          306 LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSY-----------------NNFFRM  368 (447)
T ss_dssp             SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECS-----------------TTEEEE
T ss_pred             CeEEEEeCCCCccccceeeccccccccccccccccccccceEEEECCCCCEEEEecc-----------------CCEEEE
Confidence            777775  33 4  333321100          000011224899999987777654                 588999


Q ss_pred             EeCCCCeEEEecCC---------------------------------CCCcceEEEcCCCCEEEEEeC
Q 026389          203 YDPSLNETSILLDS---------------------------------LFFANGVALSKDEDYLVVCET  237 (239)
Q Consensus       203 ~d~~~~~~~~~~~~---------------------------------l~~pnGia~s~dg~~lyvadt  237 (239)
                      ||..+++...+...                                 -.....++++|+|+.|.++-+
T Consensus       369 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~  436 (447)
T 3dw8_B          369 FDRNTKRDITLEASRENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNKKILHTAWHPKENIIAVATT  436 (447)
T ss_dssp             EETTTCCEEEEECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTTSCCCEEEECSSSSEEEEECS
T ss_pred             EEcCCCcceeeeecccccccccccCCccccccCCcccccccccccccCCceeEEEECCCCCEEEEEec
Confidence            99887776543211                                 112356999999998877654

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=97.90  E-value=7.4e-05  Score=63.87  Aligned_cols=141  Identities=10%  Similarity=-0.013  Sum_probs=81.0

Q ss_pred             CcceEEEcCCCC-EEEEeCCCeEEEEecC-Cc----EEEeeeccCcCccCeEEcCCCCEEEEeCCCCeEEEc--cCCce-
Q 026389           78 GPEDVCVDRNGV-LYTATRDGWIKRLHKN-GT----WENWKLIGGDTLLGITTTQENEILVCDADKGLLKVT--EEGVT-  148 (239)
Q Consensus        78 gPe~ia~d~~G~-ly~~~~~g~I~~~~~~-G~----~~~~~~~~~~p~~Gl~~d~~G~L~v~d~~~g~~~v~--~~g~~-  148 (239)
                      .-.+++|.++|. |++++.++.|..|+.. ++    ...+........ .+++.++|+++++-...+.+++.  ..+.. 
T Consensus        57 ~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~  135 (377)
T 3dwl_C           57 IVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAAT-FVRWSPNEDKFAVGSGARVISVCYFEQENDW  135 (377)
T ss_dssp             CEEEEEECTTTCCEEEEETTSSEEEC------CCCCEEECCCCSSCEE-EEECCTTSSCCEEEESSSCEEECCC-----C
T ss_pred             eEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEecccCCceE-EEEECCCCCEEEEEecCCeEEEEEECCcccc
Confidence            346789999875 5577799999998853 33    223233334455 88899999765555556667664  23211 


Q ss_pred             EEecccCCccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCC------------------CeE
Q 026389          149 VLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSL------------------NET  210 (239)
Q Consensus       149 ~l~~~~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~------------------~~~  210 (239)
                      .+.....+..-...+.+++.++|+++++.+.                 .|.|..||..+                  ++.
T Consensus       136 ~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~-----------------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  198 (377)
T 3dwl_C          136 WVSKHLKRPLRSTILSLDWHPNNVLLAAGCA-----------------DRKAYVLSAYVRDVDAKPEASVWGSRLPFNTV  198 (377)
T ss_dssp             CCCEEECSSCCSCEEEEEECTTSSEEEEEES-----------------SSCEEEEEECCSSCC-CCCSCSSCSCCCEEEE
T ss_pred             eeeeEeecccCCCeEEEEEcCCCCEEEEEeC-----------------CCEEEEEEEEecccCCCccccccccccchhhh
Confidence            0111111111234788999999987666543                 46677777532                  112


Q ss_pred             EEecCCCCCcceEEEcCCCCEEEEEe
Q 026389          211 SILLDSLFFANGVALSKDEDYLVVCE  236 (239)
Q Consensus       211 ~~~~~~l~~pnGia~s~dg~~lyvad  236 (239)
                      ......-...+.++|+|||++|+.+.
T Consensus       199 ~~~~~~~~~v~~~~~sp~~~~l~~~~  224 (377)
T 3dwl_C          199 CAEYPSGGWVHAVGFSPSGNALAYAG  224 (377)
T ss_dssp             EECCCCSSSEEEEEECTTSSCEEEEE
T ss_pred             hhcccCCceEEEEEECCCCCEEEEEe
Confidence            11112233467899999999877654

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=97.89  E-value=0.0004  Score=60.02  Aligned_cols=131  Identities=15%  Similarity=0.155  Sum_probs=83.7

Q ss_pred             EEcCCCCEE-EEeCCCeEEEEecCC-cEEEe-eeccCcCccCeEEcCCCCEEEEeCCCCeEEEc--cCC--ceEEecccC
Q 026389           83 CVDRNGVLY-TATRDGWIKRLHKNG-TWENW-KLIGGDTLLGITTTQENEILVCDADKGLLKVT--EEG--VTVLASHVN  155 (239)
Q Consensus        83 a~d~~G~ly-~~~~~g~I~~~~~~G-~~~~~-~~~~~~p~~Gl~~d~~G~L~v~d~~~g~~~v~--~~g--~~~l~~~~~  155 (239)
                      ++.++|+++ +++.+|.|..|+... +.... ........ .+++.++|+++++-...+.+++.  .++  ...+... .
T Consensus       104 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~-~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h-~  181 (420)
T 3vl1_A          104 TAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQAHVSEIT-KLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGH-R  181 (420)
T ss_dssp             EECSSSCEEEEEETTSCEEEECTTSCEEEEETTSSSSCEE-EEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECC-S
T ss_pred             EEecCCCEEEEEECCCCEEEEeCCCcceeeecccccCccE-EEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCC-C
Confidence            556777655 667999999998643 33222 22334455 89999999877766666777665  445  4444221 1


Q ss_pred             CccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecCC-------------------
Q 026389          156 GSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDS-------------------  216 (239)
Q Consensus       156 g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~~-------------------  216 (239)
                          .....+++.++|+.+++.+.                 .|.|..||..+++.......                   
T Consensus       182 ----~~v~~~~~~~~~~~l~s~~~-----------------d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  240 (420)
T 3vl1_A          182 ----ATVTDIAIIDRGRNVLSASL-----------------DGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDR  240 (420)
T ss_dssp             ----SCEEEEEEETTTTEEEEEET-----------------TSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCS
T ss_pred             ----CcEEEEEEcCCCCEEEEEcC-----------------CCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcc
Confidence                23678999999987666543                 47788888877765444332                   


Q ss_pred             ------CCCcceEEEcCCCCEEEEEe
Q 026389          217 ------LFFANGVALSKDEDYLVVCE  236 (239)
Q Consensus       217 ------l~~pnGia~s~dg~~lyvad  236 (239)
                            ....+.++|+|||++|+++.
T Consensus       241 ~~~~~~~~~v~~~~~s~~~~~l~~~~  266 (420)
T 3vl1_A          241 QLHEISTSKKNNLEFGTYGKYVIAGH  266 (420)
T ss_dssp             SCGGGCCCCCCTTCSSCTTEEEEEEE
T ss_pred             eeeecccCcccceEEcCCCCEEEEEc
Confidence                  12334566778888776653

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=97.89  E-value=0.00025  Score=61.06  Aligned_cols=135  Identities=16%  Similarity=0.139  Sum_probs=85.4

Q ss_pred             CcceEEEcCCC--CEEEEeCCCeEEEEec-CCcEEE-e--eeccCcCccCeEEcCCC-CEEEEeCCCCeEEE-c-cCC--
Q 026389           78 GPEDVCVDRNG--VLYTATRDGWIKRLHK-NGTWEN-W--KLIGGDTLLGITTTQEN-EILVCDADKGLLKV-T-EEG--  146 (239)
Q Consensus        78 gPe~ia~d~~G--~ly~~~~~g~I~~~~~-~G~~~~-~--~~~~~~p~~Gl~~d~~G-~L~v~d~~~g~~~v-~-~~g--  146 (239)
                      .-.++++.+++  .+.++..+|.|..||. .++... +  ......+. .+++.+++ +++++-...+.+++ + .++  
T Consensus       183 ~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~-~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~  261 (357)
T 4g56_B          183 EVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPT-SVTWHPEKDDTFACGDETGNVSLVNIKNPDS  261 (357)
T ss_dssp             CEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEE-EEEECTTSTTEEEEEESSSCEEEEESSCGGG
T ss_pred             CEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeecccccccc-chhhhhcccceEEEeecccceeEEECCCCcE
Confidence            44568888765  3556678999999985 333211 1  11223455 78888775 66666545565655 4 455  


Q ss_pred             ceEEecccCCccccccccEEEcCCC-CEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecCCCCCcceEEE
Q 026389          147 VTVLASHVNGSRINLADDLIAATDG-SIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVAL  225 (239)
Q Consensus       147 ~~~l~~~~~g~~~~~pn~l~vd~dG-~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~~l~~pnGia~  225 (239)
                      ...+...     -...+.+++.++| ++.++-+.                 .|.|..||.+++++......-...++|+|
T Consensus       262 ~~~~~~~-----~~~v~~l~~sp~~~~~lasgs~-----------------D~~i~iwd~~~~~~~~~~~H~~~V~~vaf  319 (357)
T 4g56_B          262 AQTSAVH-----SQNITGLAYSYHSSPFLASISE-----------------DCTVAVLDADFSEVFRDLSHRDFVTGVAW  319 (357)
T ss_dssp             CEEECCC-----SSCEEEEEECSSSSCCEEEEET-----------------TSCEEEECTTSCEEEEECCCSSCEEEEEE
T ss_pred             eEEEecc-----ceeEEEEEEcCCCCCEEEEEeC-----------------CCEEEEEECCCCcEeEECCCCCCEEEEEE
Confidence            3333211     1235789999987 55555433                 47899999998887666544456789999


Q ss_pred             cC-CCCEEEEE
Q 026389          226 SK-DEDYLVVC  235 (239)
Q Consensus       226 s~-dg~~lyva  235 (239)
                      +| |+++|+.+
T Consensus       320 sP~d~~~l~s~  330 (357)
T 4g56_B          320 SPLDHSKFTTV  330 (357)
T ss_dssp             CSSSTTEEEEE
T ss_pred             eCCCCCEEEEE
Confidence            98 78876543

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=97.89  E-value=0.00092  Score=58.00  Aligned_cols=135  Identities=9%  Similarity=0.059  Sum_probs=88.9

Q ss_pred             cceEEEcCCCCEEEEeCCCeEEEEecC--Cc-EEEeeeccCcCccCeEEcCCCCEEEEeCCCCeEEEc--cCC--ceEEe
Q 026389           79 PEDVCVDRNGVLYTATRDGWIKRLHKN--GT-WENWKLIGGDTLLGITTTQENEILVCDADKGLLKVT--EEG--VTVLA  151 (239)
Q Consensus        79 Pe~ia~d~~G~ly~~~~~g~I~~~~~~--G~-~~~~~~~~~~p~~Gl~~d~~G~L~v~d~~~g~~~v~--~~g--~~~l~  151 (239)
                      -.++++++ ..+++++.+|.|..|+..  ++ ...+....+... ++++.++|+++++-...+.+++.  ..+  ...+.
T Consensus       179 v~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~  256 (401)
T 4aez_A          179 VGCLSWNR-HVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVC-GLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKT  256 (401)
T ss_dssp             EEEEEEET-TEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEE-EEEECTTSSEEEEEETTSCEEEEETTCSSEEEEEC
T ss_pred             eEEEEECC-CEEEEEcCCCCEEEEecccCcceeeEEcCCCCCee-EEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEec
Confidence            34566632 345567788999888864  22 333333445566 89999999877766556667665  344  22222


Q ss_pred             cccCCccccccccEEEcCCC-CEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecCCCCCcceEEEcCCCC
Q 026389          152 SHVNGSRINLADDLIAATDG-SIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDED  230 (239)
Q Consensus       152 ~~~~g~~~~~pn~l~vd~dG-~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~~l~~pnGia~s~dg~  230 (239)
                      ..     -.....+++.++| .++++...+               ..|.|..||..+++.......-...+.++++++++
T Consensus       257 ~~-----~~~v~~~~~~p~~~~ll~~~~gs---------------~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~s~~~~  316 (401)
T 4aez_A          257 NH-----NAAVKAVAWCPWQSNLLATGGGT---------------MDKQIHFWNAATGARVNTVDAGSQVTSLIWSPHSK  316 (401)
T ss_dssp             CC-----SSCCCEEEECTTSTTEEEEECCT---------------TTCEEEEEETTTCCEEEEEECSSCEEEEEECSSSS
T ss_pred             CC-----cceEEEEEECCCCCCEEEEecCC---------------CCCEEEEEECCCCCEEEEEeCCCcEEEEEECCCCC
Confidence            11     1246789999987 677765421               15889999988777655555556688999999999


Q ss_pred             EEEEE
Q 026389          231 YLVVC  235 (239)
Q Consensus       231 ~lyva  235 (239)
                      .++++
T Consensus       317 ~l~~~  321 (401)
T 4aez_A          317 EIMST  321 (401)
T ss_dssp             EEEEE
T ss_pred             eEEEE
Confidence            88875

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=97.89  E-value=0.0007  Score=56.83  Aligned_cols=66  Identities=17%  Similarity=0.079  Sum_probs=44.8

Q ss_pred             CCcceEEEcCCCC-EEEEeCCCeEEEEecC-CcEEEeeeccCcCccCeEE--cCCCCEEEEeCCCCeEEEc
Q 026389           77 NGPEDVCVDRNGV-LYTATRDGWIKRLHKN-GTWENWKLIGGDTLLGITT--TQENEILVCDADKGLLKVT  143 (239)
Q Consensus        77 ~gPe~ia~d~~G~-ly~~~~~g~I~~~~~~-G~~~~~~~~~~~p~~Gl~~--d~~G~L~v~d~~~g~~~v~  143 (239)
                      ..-.+++|.++|. |++++.+|.|..|+.+ ++............ .+++  +++++++++-...+.+++.
T Consensus        87 ~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~v~-~~~~~~~~~~~~l~~~~~dg~i~vw  156 (368)
T 3mmy_A           87 GPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQIAQHDAPVK-TIHWIKAPNYSCVMTGSWDKTLKFW  156 (368)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEE-EEEEEECSSCEEEEEEETTSEEEEE
T ss_pred             CCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCceeeccccCceE-EEEEEeCCCCCEEEEccCCCcEEEE
Confidence            3456789999886 4567799999999964 44444444445556 8888  7888766665555666554

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=97.88  E-value=0.00029  Score=61.31  Aligned_cols=103  Identities=15%  Similarity=0.261  Sum_probs=68.2

Q ss_pred             cCCcceEEE--cC-CCC--EEEEeCCCeEEEEec----CCcE----EEeeeccCcCccCeEEcC-CCCEEEEeCCCCeEE
Q 026389           76 LNGPEDVCV--DR-NGV--LYTATRDGWIKRLHK----NGTW----ENWKLIGGDTLLGITTTQ-ENEILVCDADKGLLK  141 (239)
Q Consensus        76 ~~gPe~ia~--d~-~G~--ly~~~~~g~I~~~~~----~G~~----~~~~~~~~~p~~Gl~~d~-~G~L~v~d~~~g~~~  141 (239)
                      +..|.|++.  ++ .|.  +|+...+|++..|..    +|++    ..-...++.|- |+++|+ .|+|||++...|+++
T Consensus       127 ~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lgsq~E-gcvvDd~~g~Lyv~eEd~GIw~  205 (355)
T 3amr_A          127 INEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMNSQTE-GMAADDEYGRLYIAEEDEAIWK  205 (355)
T ss_dssp             CSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECSSCEE-EEEEETTTTEEEEEETTTEEEE
T ss_pred             CCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCCCCcc-eEEEcCCCCeEEEecccceEEE
Confidence            478999999  76 465  557778898877552    3422    12234567899 999994 579999999999999


Q ss_pred             Ec--cCC--ceEEecccCCcccc-ccccEEEc--CCC--CEEEEeCC
Q 026389          142 VT--EEG--VTVLASHVNGSRIN-LADDLIAA--TDG--SIYFSVAS  179 (239)
Q Consensus       142 v~--~~g--~~~l~~~~~g~~~~-~pn~l~vd--~dG--~iy~td~~  179 (239)
                      ++  +++  ...+...+.+..+. -+.||++.  ++|  .|++++..
T Consensus       206 ~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG  252 (355)
T 3amr_A          206 FSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQG  252 (355)
T ss_dssp             EECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGG
T ss_pred             EeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCC
Confidence            98  333  22233333333333 57899995  444  57888744

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=97.88  E-value=0.00015  Score=71.27  Aligned_cols=144  Identities=14%  Similarity=0.109  Sum_probs=89.0

Q ss_pred             cceEEEcCCCC-EEEEeCCCeEE-EEecCC-cEEEeeeccCcCccCeEEcCCCCEEE-EeCCCCeEEEc-cCC-ceEEec
Q 026389           79 PEDVCVDRNGV-LYTATRDGWIK-RLHKNG-TWENWKLIGGDTLLGITTTQENEILV-CDADKGLLKVT-EEG-VTVLAS  152 (239)
Q Consensus        79 Pe~ia~d~~G~-ly~~~~~g~I~-~~~~~G-~~~~~~~~~~~p~~Gl~~d~~G~L~v-~d~~~g~~~v~-~~g-~~~l~~  152 (239)
                      ..+++|. +|. |++.+.+++|+ .++.++ +...+........ .+++.+||+.++ +.....+..++ .+| ...+..
T Consensus       340 ~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~~l~~~~~~~~-~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~  417 (1045)
T 1k32_A          340 YVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAEKFEENLGNVF-AMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIER  417 (1045)
T ss_dssp             EEEECSS-SEEEEEEEETTEEEEEEEETTTCCEEECCCCCCSEE-EEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred             EEeeeEc-CCCeEEEEECCCceEEEEECCCCCceEecCCcccee-eeEECCCCCEEEEECCCCeEEEEECCCCceEEecc
Confidence            3456777 763 55555577888 888654 4444333334566 899999997554 44433444556 466 444432


Q ss_pred             ccCCccccccccEEEcCCCC-EEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecCCCCCcceEEEcCCCCE
Q 026389          153 HVNGSRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDY  231 (239)
Q Consensus       153 ~~~g~~~~~pn~l~vd~dG~-iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~~l~~pnGia~s~dg~~  231 (239)
                      ...    .....++++|||+ |.++.....+..        .....+.|+.||.++++...+.........++|+|||++
T Consensus       418 ~~~----~~v~~~~~SpDG~~la~~~~~~~~~~--------~~~~~~~i~l~d~~~g~~~~l~~~~~~~~~~~~spdG~~  485 (1045)
T 1k32_A          418 SRE----AMITDFTISDNSRFIAYGFPLKHGET--------DGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKN  485 (1045)
T ss_dssp             CSS----SCCCCEEECTTSCEEEEEEEECSSTT--------CSCCEEEEEEEETTTTEEEECSCSSSBEEEEEECTTSCE
T ss_pred             CCC----CCccceEECCCCCeEEEEecCccccc--------cCCCCCeEEEEECCCCcEEEeeCCCcccCCceEcCCCCE
Confidence            211    2347899999996 444432100000        001236899999998887777666666788999999999


Q ss_pred             EEEEe
Q 026389          232 LVVCE  236 (239)
Q Consensus       232 lyvad  236 (239)
                      ||+..
T Consensus       486 l~~~s  490 (1045)
T 1k32_A          486 LYYLS  490 (1045)
T ss_dssp             EEEEE
T ss_pred             EEEEe
Confidence            88764

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=97.88  E-value=0.00028  Score=60.03  Aligned_cols=126  Identities=10%  Similarity=0.064  Sum_probs=78.6

Q ss_pred             EEEEeCCCeEEEEecCCcEE-----------Eeeec-cCcCccCeEEcC--CCCEEEEeCCCCeEEEc--cCC-ceEEec
Q 026389           90 LYTATRDGWIKRLHKNGTWE-----------NWKLI-GGDTLLGITTTQ--ENEILVCDADKGLLKVT--EEG-VTVLAS  152 (239)
Q Consensus        90 ly~~~~~g~I~~~~~~G~~~-----------~~~~~-~~~p~~Gl~~d~--~G~L~v~d~~~g~~~v~--~~g-~~~l~~  152 (239)
                      +.+++.|+.|..|+.+++..           .+... ..... .+++++  +|+++++-...+.+++.  ..+ ...+..
T Consensus        88 ~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~  166 (343)
T 3lrv_A           88 IISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVDSANEII-YMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHS  166 (343)
T ss_dssp             EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEECCCSSCEE-EEECCC---CCEEEEEETTCCEEEEESSSSCEEEEEC
T ss_pred             eEEecCCCeEEEEEccCceEEeecCCcceeEEeecCCCCCEE-EEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEe
Confidence            55666777777776544321           11111 13345 788888  89888766666777665  455 322211


Q ss_pred             ccCCccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEE--EecC-CCCCcceEEEcCCC
Q 026389          153 HVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETS--ILLD-SLFFANGVALSKDE  229 (239)
Q Consensus       153 ~~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~--~~~~-~l~~pnGia~s~dg  229 (239)
                      ...   -...+.+++.++|.++++-..                 .|.|..||..+++..  .+.. .-...+.++|+|||
T Consensus       167 ~~~---~~~i~~~~~~pdg~~lasg~~-----------------dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g  226 (343)
T 3lrv_A          167 AKS---DVEYSSGVLHKDSLLLALYSP-----------------DGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNG  226 (343)
T ss_dssp             CCS---SCCCCEEEECTTSCEEEEECT-----------------TSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTS
T ss_pred             cCC---CCceEEEEECCCCCEEEEEcC-----------------CCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCC
Confidence            111   123678999999998887554                 588999998877643  3332 24566899999999


Q ss_pred             CEEEEEe
Q 026389          230 DYLVVCE  236 (239)
Q Consensus       230 ~~lyvad  236 (239)
                      ++|+.+.
T Consensus       227 ~~l~s~~  233 (343)
T 3lrv_A          227 YWMVVEC  233 (343)
T ss_dssp             SEEEEEE
T ss_pred             CEEEEEe
Confidence            9887654

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=97.88  E-value=0.0012  Score=57.19  Aligned_cols=138  Identities=12%  Similarity=0.038  Sum_probs=90.3

Q ss_pred             CCcceEEEcCCCCEE-EEeCCCeEEEEecC-CcE-EEeeeccCcCccCeEEcCCC-CEEEEeC--CCCeEEEc--cCC--
Q 026389           77 NGPEDVCVDRNGVLY-TATRDGWIKRLHKN-GTW-ENWKLIGGDTLLGITTTQEN-EILVCDA--DKGLLKVT--EEG--  146 (239)
Q Consensus        77 ~gPe~ia~d~~G~ly-~~~~~g~I~~~~~~-G~~-~~~~~~~~~p~~Gl~~d~~G-~L~v~d~--~~g~~~v~--~~g--  146 (239)
                      ....++++.++|.++ +++.++.|..||.. ++. ..+........ .+++.++| .++++..  ..+.+++.  .++  
T Consensus       218 ~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~-~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~  296 (401)
T 4aez_A          218 SEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVK-AVAWCPWQSNLLATGGGTMDKQIHFWNAATGAR  296 (401)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCC-EEEECTTSTTEEEEECCTTTCEEEEEETTTCCE
T ss_pred             CCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEE-EEEECCCCCCEEEEecCCCCCEEEEEECCCCCE
Confidence            345678999988655 66789999999964 333 23333344556 89999877 6777654  46667665  355  


Q ss_pred             ceEEecccCCccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEe---cCCCCCcceE
Q 026389          147 VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSIL---LDSLFFANGV  223 (239)
Q Consensus       147 ~~~l~~~~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~---~~~l~~pnGi  223 (239)
                      ...+..   +   .....+++.++|..+++....               ..|.|..||..+++....   ...-.....+
T Consensus       297 ~~~~~~---~---~~v~~~~~s~~~~~l~~~~g~---------------~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~  355 (401)
T 4aez_A          297 VNTVDA---G---SQVTSLIWSPHSKEIMSTHGF---------------PDNNLSIWSYSSSGLTKQVDIPAHDTRVLYS  355 (401)
T ss_dssp             EEEEEC---S---SCEEEEEECSSSSEEEEEECT---------------TTCEEEEEEEETTEEEEEEEEECCSSCCCEE
T ss_pred             EEEEeC---C---CcEEEEEECCCCCeEEEEeec---------------CCCcEEEEecCCccceeEEEecCCCCCEEEE
Confidence            333321   1   246889999999766653210               147888888776654433   2334567899


Q ss_pred             EEcCCCCEEEEEe
Q 026389          224 ALSKDEDYLVVCE  236 (239)
Q Consensus       224 a~s~dg~~lyvad  236 (239)
                      +++|||++|+.+.
T Consensus       356 ~~s~dg~~l~s~~  368 (401)
T 4aez_A          356 ALSPDGRILSTAA  368 (401)
T ss_dssp             EECTTSSEEEEEC
T ss_pred             EECCCCCEEEEEe
Confidence            9999999887654

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=97.86  E-value=0.0011  Score=58.07  Aligned_cols=135  Identities=16%  Similarity=0.205  Sum_probs=86.4

Q ss_pred             cceEEEcCCCC-EEEEeCCCeEEEEec-CCc-EEEeeeccCcCccCeEEcCCCCEEEEeCCCCeEEEc--cCC--ceEEe
Q 026389           79 PEDVCVDRNGV-LYTATRDGWIKRLHK-NGT-WENWKLIGGDTLLGITTTQENEILVCDADKGLLKVT--EEG--VTVLA  151 (239)
Q Consensus        79 Pe~ia~d~~G~-ly~~~~~g~I~~~~~-~G~-~~~~~~~~~~p~~Gl~~d~~G~L~v~d~~~g~~~v~--~~g--~~~l~  151 (239)
                      -.++++.++|. |++++.|+.|..||. +|+ ...+........ .+.+.++|+++++-...+.+++.  ..+  ...+.
T Consensus       195 V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~-~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~  273 (410)
T 1vyh_C          195 VSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVR-MVRPNQDGTLIASCSNDQTVRVWVVATKECKAELR  273 (410)
T ss_dssp             EEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEE-EEEECTTSSEEEEEETTSCEEEEETTTCCEEEEEC
T ss_pred             EEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEE-EEEECCCCCEEEEEcCCCeEEEEECCCCceeeEec
Confidence            45688988876 446779999999996 444 334433333445 78888999888777667777775  344  23332


Q ss_pred             cccCCccccccccEEEcCC--------------------CCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEE
Q 026389          152 SHVNGSRINLADDLIAATD--------------------GSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETS  211 (239)
Q Consensus       152 ~~~~g~~~~~pn~l~vd~d--------------------G~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~  211 (239)
                      ..     -...+.+++.++                    |.+.++.                 ...|.|..||..+++..
T Consensus       274 ~h-----~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sg-----------------s~D~~i~iwd~~~~~~~  331 (410)
T 1vyh_C          274 EH-----RHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSG-----------------SRDKTIKMWDVSTGMCL  331 (410)
T ss_dssp             CC-----SSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEE-----------------ETTSEEEEEETTTTEEE
T ss_pred             CC-----CceEEEEEEcCcccccchhhhccccccccCCCCCEEEEE-----------------eCCCeEEEEECCCCceE
Confidence            11     123456667665                    3333333                 33688999998877654


Q ss_pred             Eec-CCCCCcceEEEcCCCCEEEEEe
Q 026389          212 ILL-DSLFFANGVALSKDEDYLVVCE  236 (239)
Q Consensus       212 ~~~-~~l~~pnGia~s~dg~~lyvad  236 (239)
                      ... ..-...++++|+++|++|+.+.
T Consensus       332 ~~~~~h~~~v~~v~~~~~g~~l~s~s  357 (410)
T 1vyh_C          332 MTLVGHDNWVRGVLFHSGGKFILSCA  357 (410)
T ss_dssp             EEEECCSSCEEEEEECSSSSCEEEEE
T ss_pred             EEEECCCCcEEEEEEcCCCCEEEEEe
Confidence            433 3334568999999999877653

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=97.85  E-value=0.0015  Score=55.01  Aligned_cols=129  Identities=12%  Similarity=0.054  Sum_probs=83.5

Q ss_pred             CCcceEEEcCCC-C-EEEEeCCCeEEEEecCC---c----EEEeeeccCcCccCeEEcCCCCEEEEeCCCCeEEEc--cC
Q 026389           77 NGPEDVCVDRNG-V-LYTATRDGWIKRLHKNG---T----WENWKLIGGDTLLGITTTQENEILVCDADKGLLKVT--EE  145 (239)
Q Consensus        77 ~gPe~ia~d~~G-~-ly~~~~~g~I~~~~~~G---~----~~~~~~~~~~p~~Gl~~d~~G~L~v~d~~~g~~~v~--~~  145 (239)
                      ..-.++++.+++ + |++++.|+.|..|+..+   +    ...+........ .+++.++|+++++-...+.+++.  .+
T Consensus        18 ~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~-~~~~s~dg~~l~s~s~D~~v~~wd~~~   96 (319)
T 3frx_A           18 GWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQ-DCTLTADGAYALSASWDKTLRLWDVAT   96 (319)
T ss_dssp             SCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEE-EEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred             ceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEE-EEEECCCCCEEEEEeCCCEEEEEECCC
Confidence            345678998854 4 55777999998887532   1    122222233345 78899999887777777888876  45


Q ss_pred             C--ceEEecccCCccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecCCCCCcceE
Q 026389          146 G--VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGV  223 (239)
Q Consensus       146 g--~~~l~~~~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~~l~~pnGi  223 (239)
                      +  ...+....     ...+.++++++|.++++.+.                 .|.|..||.++..+..+...-...+.+
T Consensus        97 ~~~~~~~~~h~-----~~v~~~~~~~~~~~l~s~s~-----------------D~~i~vwd~~~~~~~~~~~h~~~v~~~  154 (319)
T 3frx_A           97 GETYQRFVGHK-----SDVMSVDIDKKASMIISGSR-----------------DKTIKVWTIKGQCLATLLGHNDWVSQV  154 (319)
T ss_dssp             TEEEEEEECCS-----SCEEEEEECTTSCEEEEEET-----------------TSCEEEEETTSCEEEEECCCSSCEEEE
T ss_pred             CCeeEEEccCC-----CcEEEEEEcCCCCEEEEEeC-----------------CCeEEEEECCCCeEEEEeccCCcEEEE
Confidence            5  33332211     23678999999987777654                 477888888766665555444455667


Q ss_pred             EEcCC
Q 026389          224 ALSKD  228 (239)
Q Consensus       224 a~s~d  228 (239)
                      ++.|+
T Consensus       155 ~~~~~  159 (319)
T 3frx_A          155 RVVPN  159 (319)
T ss_dssp             EECCC
T ss_pred             EEccC
Confidence            77664

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=97.85  E-value=0.00057  Score=64.46  Aligned_cols=138  Identities=9%  Similarity=0.044  Sum_probs=90.9

Q ss_pred             cCCcceEEEcCCCCEE-EEeCCCeEEEEec-CCcE-EEeeeccCcCccCeEEcCCCCEEEEeCCCCeEEEc--cCC--ce
Q 026389           76 LNGPEDVCVDRNGVLY-TATRDGWIKRLHK-NGTW-ENWKLIGGDTLLGITTTQENEILVCDADKGLLKVT--EEG--VT  148 (239)
Q Consensus        76 ~~gPe~ia~d~~G~ly-~~~~~g~I~~~~~-~G~~-~~~~~~~~~p~~Gl~~d~~G~L~v~d~~~g~~~v~--~~g--~~  148 (239)
                      -....+++|+|+|... ++..+|.|..|+. +|+. ..+....+... .+++.++|+.+++-...|.+++.  .++  ..
T Consensus        13 ~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~-~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~   91 (814)
T 3mkq_A           13 SDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVR-AGKFIARKNWIIVGSDDFRIRVFNYNTGEKVV   91 (814)
T ss_dssp             CSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEE-EEEEEGGGTEEEEEETTSEEEEEETTTCCEEE
T ss_pred             CCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEE-EEEEeCCCCEEEEEeCCCeEEEEECCCCcEEE
Confidence            3467789999998755 6678999999995 4543 33333344556 89999999876665557777765  455  33


Q ss_pred             EEecccCCccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCC-eEEEec-CCCCCcceEEEc
Q 026389          149 VLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLN-ETSILL-DSLFFANGVALS  226 (239)
Q Consensus       149 ~l~~~~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~-~~~~~~-~~l~~pnGia~s  226 (239)
                      .+... .    .....+++.++|...++.+.                 .|.|..||.+++ ...... ..-.....++|+
T Consensus        92 ~~~~~-~----~~v~~~~~s~~~~~l~~~~~-----------------dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~  149 (814)
T 3mkq_A           92 DFEAH-P----DYIRSIAVHPTKPYVLSGSD-----------------DLTVKLWNWENNWALEQTFEGHEHFVMCVAFN  149 (814)
T ss_dssp             EEECC-S----SCEEEEEECSSSSEEEEEET-----------------TSEEEEEEGGGTSEEEEEEECCSSCEEEEEEE
T ss_pred             EEecC-C----CCEEEEEEeCCCCEEEEEcC-----------------CCEEEEEECCCCceEEEEEcCCCCcEEEEEEE
Confidence            33211 1    24678999999975555433                 478888887765 433333 333456889999


Q ss_pred             C-CCCEEEEEe
Q 026389          227 K-DEDYLVVCE  236 (239)
Q Consensus       227 ~-dg~~lyvad  236 (239)
                      | |++.++++.
T Consensus       150 p~~~~~l~~~~  160 (814)
T 3mkq_A          150 PKDPSTFASGC  160 (814)
T ss_dssp             TTEEEEEEEEE
T ss_pred             cCCCCEEEEEe
Confidence            8 777666553

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=97.84  E-value=0.00034  Score=59.45  Aligned_cols=135  Identities=9%  Similarity=0.023  Sum_probs=85.6

Q ss_pred             CcceEEEcC--CCCEE-EEeCCCeEEEEecC-CcEEEee-ec-cCcCccCeEEcCCCCEEEEeCCCCeEEEc--cCC--c
Q 026389           78 GPEDVCVDR--NGVLY-TATRDGWIKRLHKN-GTWENWK-LI-GGDTLLGITTTQENEILVCDADKGLLKVT--EEG--V  147 (239)
Q Consensus        78 gPe~ia~d~--~G~ly-~~~~~g~I~~~~~~-G~~~~~~-~~-~~~p~~Gl~~d~~G~L~v~d~~~g~~~v~--~~g--~  147 (239)
                      .-.++++++  +|.++ +++.+|.|..||.. ++..... .. ..... .+++.++|+++++-...|.+++.  .++  .
T Consensus       127 ~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~-~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~  205 (343)
T 3lrv_A          127 EIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYS-SGVLHKDSLLLALYSPDGILDVYNLSSPDQA  205 (343)
T ss_dssp             CEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCC-EEEECTTSCEEEEECTTSCEEEEESSCTTSC
T ss_pred             CEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceE-EEEECCCCCEEEEEcCCCEEEEEECCCCCCC
Confidence            356788999  88766 56799999999963 4442222 12 22355 89999999988886667777775  455  2


Q ss_pred             -eEEecccCCccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecCCC---CCc---
Q 026389          148 -TVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSL---FFA---  220 (239)
Q Consensus       148 -~~l~~~~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~~l---~~p---  220 (239)
                       ..+..    .--...+.+++.++|...++.+.                  +.|..||..+++.......+   ..+   
T Consensus       206 ~~~~~~----~h~~~v~~l~fs~~g~~l~s~~~------------------~~v~iwd~~~~~~~~~~~~~~~~~~~~~~  263 (343)
T 3lrv_A          206 SSRFPV----DEEAKIKEVKFADNGYWMVVECD------------------QTVVCFDLRKDVGTLAYPTYTIPEFKTGT  263 (343)
T ss_dssp             CEECCC----CTTSCEEEEEECTTSSEEEEEES------------------SBEEEEETTSSTTCBSSCCCBC-----CC
T ss_pred             ccEEec----cCCCCEEEEEEeCCCCEEEEEeC------------------CeEEEEEcCCCCcceeecccccccccccc
Confidence             23321    01134789999999987766543                  47888988765432111111   122   


Q ss_pred             ceEEEcCCCCEEEEE
Q 026389          221 NGVALSKDEDYLVVC  235 (239)
Q Consensus       221 nGia~s~dg~~lyva  235 (239)
                      ..++|+|+|++|.++
T Consensus       264 ~~~~~~~~g~~l~~~  278 (343)
T 3lrv_A          264 VTYDIDDSGKNMIAY  278 (343)
T ss_dssp             EEEEECTTSSEEEEE
T ss_pred             eEEEECCCCCEEEEe
Confidence            249999999988773

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=97.84  E-value=0.00093  Score=56.39  Aligned_cols=141  Identities=16%  Similarity=0.097  Sum_probs=86.9

Q ss_pred             CCcceEEEcCC--CCE-EEEeCCCeEEEEecCCc----EEEeeeccCcCccCeEEcC-------------CCCEEEEeCC
Q 026389           77 NGPEDVCVDRN--GVL-YTATRDGWIKRLHKNGT----WENWKLIGGDTLLGITTTQ-------------ENEILVCDAD  136 (239)
Q Consensus        77 ~gPe~ia~d~~--G~l-y~~~~~g~I~~~~~~G~----~~~~~~~~~~p~~Gl~~d~-------------~G~L~v~d~~  136 (239)
                      ....+++|.++  |.+ ++++.++.|..|+....    ...+........ .+++.+             +++++++-..
T Consensus       102 ~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  180 (379)
T 3jrp_A          102 ASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVN-SASWAPATIEEDGEHNGTKESRKFVTGGA  180 (379)
T ss_dssp             SCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEE-EEEECCCC----------CTTCEEEEEET
T ss_pred             cceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceE-EEEEcCccccccccccCCCCCCEEEEEeC
Confidence            45678899987  755 46779999999986322    222222333445 788887             5776666655


Q ss_pred             CCeEEEc--cCC--ceEEecccCCccccccccEEEcCC---CCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCe
Q 026389          137 KGLLKVT--EEG--VTVLASHVNGSRINLADDLIAATD---GSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNE  209 (239)
Q Consensus       137 ~g~~~v~--~~g--~~~l~~~~~g~~~~~pn~l~vd~d---G~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~  209 (239)
                      .+.+++.  ..+  ...+.....+. -.....+++.++   |.++++-..                 .|.|..||..+++
T Consensus       181 dg~i~i~d~~~~~~~~~~~~~~~~h-~~~v~~~~~sp~~~~~~~l~s~~~-----------------dg~i~iwd~~~~~  242 (379)
T 3jrp_A          181 DNLVKIWKYNSDAQTYVLESTLEGH-SDWVRDVAWSPTVLLRSYLASVSQ-----------------DRTCIIWTQDNEQ  242 (379)
T ss_dssp             TSCEEEEEEETTTTEEEEEEEECCC-SSCEEEEEECCCCSSSEEEEEEET-----------------TSCEEEEEESSTT
T ss_pred             CCeEEEEEecCCCcceeeEEEEecc-cCcEeEEEECCCCCCCCeEEEEeC-----------------CCEEEEEeCCCCC
Confidence            6666654  333  22222222221 134678999999   776666543                 4778888877652


Q ss_pred             ---EEEecC---CCCCcceEEEcCCCCEEEEEe
Q 026389          210 ---TSILLD---SLFFANGVALSKDEDYLVVCE  236 (239)
Q Consensus       210 ---~~~~~~---~l~~pnGia~s~dg~~lyvad  236 (239)
                         ...+..   .-.....++|+|||++|+++.
T Consensus       243 ~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~  275 (379)
T 3jrp_A          243 GPWKKTLLKEEKFPDVLWRASWSLSGNVLALSG  275 (379)
T ss_dssp             SCCEEEESSSSCCSSCEEEEEECSSSCCEEEEE
T ss_pred             ccceeeeeccccCCCcEEEEEEcCCCCEEEEec
Confidence               223332   223457889999999887654

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=97.84  E-value=0.00032  Score=60.34  Aligned_cols=134  Identities=8%  Similarity=0.056  Sum_probs=82.7

Q ss_pred             cceEEEcCCCCEE-EEeCCCeEEEEecC-CcE-EEeeeccCcCccCeEEcCCC-CEEEEeCCCCeEEEc--cCC--ceEE
Q 026389           79 PEDVCVDRNGVLY-TATRDGWIKRLHKN-GTW-ENWKLIGGDTLLGITTTQEN-EILVCDADKGLLKVT--EEG--VTVL  150 (239)
Q Consensus        79 Pe~ia~d~~G~ly-~~~~~g~I~~~~~~-G~~-~~~~~~~~~p~~Gl~~d~~G-~L~v~d~~~g~~~v~--~~g--~~~l  150 (239)
                      -.+++|.++|+.+ +++.++.|..|+.. ++. ..+........ .+++.+++ .++++....+.+++.  ..+  ...+
T Consensus       142 V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~-~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~  220 (357)
T 4g56_B          142 VKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVN-CVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRI  220 (357)
T ss_dssp             EEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEE-EEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBC
T ss_pred             EEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEE-EEEEccCCCceeeeeccCCceEEEECCCCceeeee
Confidence            4578999998755 66799999999964 443 23322334455 78888777 466665556777775  344  2222


Q ss_pred             ecccCCccccccccEEEcCCC-CEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecCC-CCCcceEEEcCC
Q 026389          151 ASHVNGSRINLADDLIAATDG-SIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDS-LFFANGVALSKD  228 (239)
Q Consensus       151 ~~~~~g~~~~~pn~l~vd~dG-~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~~-l~~pnGia~s~d  228 (239)
                      ....   .-..+..+++.|++ .++++...                 .+.|..||..+++......+ -...+.++|+||
T Consensus       221 ~~~~---~~~~v~~v~~sp~~~~~la~g~~-----------------d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~  280 (357)
T 4g56_B          221 DFCA---SDTIPTSVTWHPEKDDTFACGDE-----------------TGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYH  280 (357)
T ss_dssp             CCTT---CCSCEEEEEECTTSTTEEEEEES-----------------SSCEEEEESSCGGGCEEECCCSSCEEEEEECSS
T ss_pred             eecc---ccccccchhhhhcccceEEEeec-----------------ccceeEEECCCCcEeEEEeccceeEEEEEEcCC
Confidence            1111   11346788999875 66555432                 47888899876654333333 334588999998


Q ss_pred             CCEEE
Q 026389          229 EDYLV  233 (239)
Q Consensus       229 g~~ly  233 (239)
                      ++.++
T Consensus       281 ~~~~l  285 (357)
T 4g56_B          281 SSPFL  285 (357)
T ss_dssp             SSCCE
T ss_pred             CCCEE
Confidence            85433

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=97.84  E-value=0.00051  Score=58.79  Aligned_cols=141  Identities=14%  Similarity=0.091  Sum_probs=88.2

Q ss_pred             CCcceEEEcCC----C---C-EEEEeCCCeEEEEecC-Cc------EEEeeec-----cCcCccCeEEc----CCCCE-E
Q 026389           77 NGPEDVCVDRN----G---V-LYTATRDGWIKRLHKN-GT------WENWKLI-----GGDTLLGITTT----QENEI-L  131 (239)
Q Consensus        77 ~gPe~ia~d~~----G---~-ly~~~~~g~I~~~~~~-G~------~~~~~~~-----~~~p~~Gl~~d----~~G~L-~  131 (239)
                      ..-.+++|.++    |   . |++++.+|.|..|+.+ ++      ...+...     ..... .+++.    ++|+. +
T Consensus        63 ~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~~~~~l  141 (397)
T 1sq9_A           63 SGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFW-ALKWGASNDRLLSHRL  141 (397)
T ss_dssp             TCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEE-EEEEECCC----CEEE
T ss_pred             CcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEE-EEEEeeccCCCCceEE
Confidence            34567899988    7   5 4466789999888852 33      4443332     24556 89999    88976 6


Q ss_pred             EEeCCCCeEEE-c-cC------C--ce-----EEec--ccCCccccccccEEEcCCCCEEEEeCCCCcCcccccccceee
Q 026389          132 VCDADKGLLKV-T-EE------G--VT-----VLAS--HVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEA  194 (239)
Q Consensus       132 v~d~~~g~~~v-~-~~------g--~~-----~l~~--~~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~  194 (239)
                      ++-...|.+++ + ..      +  ..     .+..  ......-.....+++.++| ++++...               
T Consensus       142 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~---------------  205 (397)
T 1sq9_A          142 VATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFN---------------  205 (397)
T ss_dssp             EEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECT---------------
T ss_pred             EEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeC---------------
Confidence            65544565554 3 34      3  33     3221  0001112347899999999 6666544               


Q ss_pred             cCCceEEEEeCCCCeEEEecCC-------CCCcceEEEcCCCCEEEEEe
Q 026389          195 KPHGKLLKYDPSLNETSILLDS-------LFFANGVALSKDEDYLVVCE  236 (239)
Q Consensus       195 ~~~g~v~~~d~~~~~~~~~~~~-------l~~pnGia~s~dg~~lyvad  236 (239)
                        .|.|..||..+++.......       -.....++|+|++++|+++.
T Consensus       206 --dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~  252 (397)
T 1sq9_A          206 --NGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAH  252 (397)
T ss_dssp             --TSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEE
T ss_pred             --CCcEEEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEEEe
Confidence              58899999987766554444       45678999999999887654

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=97.83  E-value=0.001  Score=62.28  Aligned_cols=140  Identities=15%  Similarity=0.130  Sum_probs=91.9

Q ss_pred             CcceEEEcCCCCEE-EEeCCCeEEEEec-CCcE-EEeeeccCcCccCeEEcCCCCEEEEeCCCCeEEEc-cCC--ceEEe
Q 026389           78 GPEDVCVDRNGVLY-TATRDGWIKRLHK-NGTW-ENWKLIGGDTLLGITTTQENEILVCDADKGLLKVT-EEG--VTVLA  151 (239)
Q Consensus        78 gPe~ia~d~~G~ly-~~~~~g~I~~~~~-~G~~-~~~~~~~~~p~~Gl~~d~~G~L~v~d~~~g~~~v~-~~g--~~~l~  151 (239)
                      .-.+++++++|++. +++.||.|..||. +++. ..+........ .+++.++|+.+++-+..+.+++. ..+  ...+.
T Consensus       432 ~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~-~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~  510 (694)
T 3dm0_A          432 FVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVL-SVAFSLDNRQIVSASRDRTIKLWNTLGECKYTIS  510 (694)
T ss_dssp             CEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEE-EEEECTTSSCEEEEETTSCEEEECTTSCEEEEEC
T ss_pred             cEEEEEECCCCCEEEEEeCCCcEEEEECCCCcceeEEeCCCCCEE-EEEEeCCCCEEEEEeCCCEEEEEECCCCcceeec
Confidence            45678999988755 6679999999996 3432 33333344556 89999999877766667777775 333  22232


Q ss_pred             cccCCccccccccEEEcCCC--CEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecCC-CCCcceEEEcCC
Q 026389          152 SHVNGSRINLADDLIAATDG--SIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDS-LFFANGVALSKD  228 (239)
Q Consensus       152 ~~~~g~~~~~pn~l~vd~dG--~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~~-l~~pnGia~s~d  228 (239)
                      ....+. ....+.+++.+++  ..+++.+.                 .|.|..||..+++......+ -...+.++++||
T Consensus       511 ~~~~~h-~~~v~~~~~~~~~~~~~l~s~s~-----------------d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spd  572 (694)
T 3dm0_A          511 EGGEGH-RDWVSCVRFSPNTLQPTIVSASW-----------------DKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPD  572 (694)
T ss_dssp             SSTTSC-SSCEEEEEECSCSSSCEEEEEET-----------------TSCEEEEETTTCCEEEEECCCSSCEEEEEECTT
T ss_pred             cCCCCC-CCcEEEEEEeCCCCcceEEEEeC-----------------CCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCC
Confidence            221221 1346788888886  35555433                 57899999887766554433 345688999999


Q ss_pred             CCEEEEEe
Q 026389          229 EDYLVVCE  236 (239)
Q Consensus       229 g~~lyvad  236 (239)
                      |++|..+.
T Consensus       573 g~~l~sg~  580 (694)
T 3dm0_A          573 GSLCASGG  580 (694)
T ss_dssp             SSEEEEEE
T ss_pred             CCEEEEEe
Confidence            99876553

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=97.83  E-value=0.00056  Score=57.37  Aligned_cols=140  Identities=11%  Similarity=-0.012  Sum_probs=86.5

Q ss_pred             CcceEEEcCC---C-CEEEEeCCCeEEEEecC-Cc--EEEeeeccCcCccCe------EEcCCCCEEEEeCCCCeEEEc-
Q 026389           78 GPEDVCVDRN---G-VLYTATRDGWIKRLHKN-GT--WENWKLIGGDTLLGI------TTTQENEILVCDADKGLLKVT-  143 (239)
Q Consensus        78 gPe~ia~d~~---G-~ly~~~~~g~I~~~~~~-G~--~~~~~~~~~~p~~Gl------~~d~~G~L~v~d~~~g~~~v~-  143 (239)
                      .-.+++|.++   | .|++++.+|.|..|+.+ ++  ...+........ .+      ++.++++++++....+.+++. 
T Consensus        67 ~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd  145 (357)
T 3i2n_A           67 PIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIIN-AIDGIGGLGIGEGAPEIVTGSRDGTVKVWD  145 (357)
T ss_dssp             CEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEEECCCSSCEE-EEEEESGGGCC-CCCEEEEEETTSCEEEEC
T ss_pred             cEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEEEEecccceE-EEeeccccccCCCccEEEEEeCCCeEEEEe
Confidence            4567889887   4 56678899999999863 33  333332333333 55      346788766666556666664 


Q ss_pred             -cCC---ceEEecccCCccccccccEE----EcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecC
Q 026389          144 -EEG---VTVLASHVNGSRINLADDLI----AATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLD  215 (239)
Q Consensus       144 -~~g---~~~l~~~~~g~~~~~pn~l~----vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~  215 (239)
                       ..+   ...+. ...+..-.....++    +.++|+++++...                 .|.|..||..+++......
T Consensus       146 ~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~-----------------d~~i~i~d~~~~~~~~~~~  207 (357)
T 3i2n_A          146 PRQKDDPVANME-PVQGENKRDCWTVAFGNAYNQEERVVCAGYD-----------------NGDIKLFDLRNMALRWETN  207 (357)
T ss_dssp             TTSCSSCSEEEC-CCTTSCCCCEEEEEEECCCC-CCCEEEEEET-----------------TSEEEEEETTTTEEEEEEE
T ss_pred             CCCCCCcceecc-ccCCCCCCceEEEEEEeccCCCCCEEEEEcc-----------------CCeEEEEECccCceeeecC
Confidence             333   22222 11222122345555    5678877666543                 5889999998887755544


Q ss_pred             CCCCcceEEEcC---CCCEEEEEe
Q 026389          216 SLFFANGVALSK---DEDYLVVCE  236 (239)
Q Consensus       216 ~l~~pnGia~s~---dg~~lyvad  236 (239)
                      .-...+.++++|   +++.|+++.
T Consensus       208 ~~~~v~~~~~~~~~~~~~~l~~~~  231 (357)
T 3i2n_A          208 IKNGVCSLEFDRKDISMNKLVATS  231 (357)
T ss_dssp             CSSCEEEEEESCSSSSCCEEEEEE
T ss_pred             CCCceEEEEcCCCCCCCCEEEEEC
Confidence            445678999999   899887764

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=97.82  E-value=0.0012  Score=56.02  Aligned_cols=135  Identities=16%  Similarity=0.054  Sum_probs=82.9

Q ss_pred             CcceEEEcCCCCE-EEEeCCCeEEEEecCCcEEEeee----ccCcCccCeEEcCCC----------CEEEEeCCCCeEEE
Q 026389           78 GPEDVCVDRNGVL-YTATRDGWIKRLHKNGTWENWKL----IGGDTLLGITTTQEN----------EILVCDADKGLLKV  142 (239)
Q Consensus        78 gPe~ia~d~~G~l-y~~~~~g~I~~~~~~G~~~~~~~----~~~~p~~Gl~~d~~G----------~L~v~d~~~g~~~v  142 (239)
                      .-.+++|+++|.. ++++.++.|..|+..++......    ...... .+++.+++          .++++-...+.+++
T Consensus       120 ~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i  198 (343)
T 2xzm_R          120 EVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVS-CVRYSPIMKSANKVQPFAPYFASVGWDGRLKV  198 (343)
T ss_dssp             CEEEEEECSSTTEEEEEETTSCEEEEESSSCEEEECCTTTSCSSCEE-EEEECCCCCSCSCCCSSCCEEEEEETTSEEEE
T ss_pred             cEEEEEECCCCCEEEEEcCCCEEEEEeccCCceeeeecccCCCceee-eeeeccccccccccCCCCCEEEEEcCCCEEEE
Confidence            4567899998864 46679999999987654322111    111233 56666665          55666555677777


Q ss_pred             c-cCC--ceEEecccCCccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCC-CCeEEEecCCCC
Q 026389          143 T-EEG--VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPS-LNETSILLDSLF  218 (239)
Q Consensus       143 ~-~~g--~~~l~~~~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~-~~~~~~~~~~l~  218 (239)
                      . .++  ...+... .    ...+.++++++|+..++-+.                 .|.|..||.. .+........-.
T Consensus       199 wd~~~~~~~~~~~h-~----~~v~~~~~s~~g~~l~sgs~-----------------dg~v~iwd~~~~~~~~~~~~~~~  256 (343)
T 2xzm_R          199 WNTNFQIRYTFKAH-E----SNVNHLSISPNGKYIATGGK-----------------DKKLLIWDILNLTYPQREFDAGS  256 (343)
T ss_dssp             EETTTEEEEEEECC-S----SCEEEEEECTTSSEEEEEET-----------------TCEEEEEESSCCSSCSEEEECSS
T ss_pred             EcCCCceeEEEcCc-c----ccceEEEECCCCCEEEEEcC-----------------CCeEEEEECCCCcccceeecCCC
Confidence            5 344  2222211 1    24678999999987777654                 5788889873 232222221223


Q ss_pred             CcceEEEcCCCCEEEEE
Q 026389          219 FANGVALSKDEDYLVVC  235 (239)
Q Consensus       219 ~pnGia~s~dg~~lyva  235 (239)
                      ..+.++|+|+++++.++
T Consensus       257 ~v~~v~~sp~~~~la~~  273 (343)
T 2xzm_R          257 TINQIAFNPKLQWVAVG  273 (343)
T ss_dssp             CEEEEEECSSSCEEEEE
T ss_pred             cEEEEEECCCCCEEEEE
Confidence            46889999999877554

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=97.82  E-value=0.00034  Score=64.63  Aligned_cols=134  Identities=12%  Similarity=0.134  Sum_probs=84.7

Q ss_pred             cceEEEcCCCCEEEE-eCC----CeEEEEecCCcEEEeeeccCcCccCeEEcCCCC-EEEEeCCCCeEEEc--cCC--ce
Q 026389           79 PEDVCVDRNGVLYTA-TRD----GWIKRLHKNGTWENWKLIGGDTLLGITTTQENE-ILVCDADKGLLKVT--EEG--VT  148 (239)
Q Consensus        79 Pe~ia~d~~G~ly~~-~~~----g~I~~~~~~G~~~~~~~~~~~p~~Gl~~d~~G~-L~v~d~~~g~~~v~--~~g--~~  148 (239)
                      -.+++|+++|...++ ..+    ++|+.|+.......+........ .++|.+++. ++++-...+.+++.  ..+  ..
T Consensus       106 v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~~~~~~~l~gh~~~v~-~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~  184 (611)
T 1nr0_A          106 VKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMN-SVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKS  184 (611)
T ss_dssp             EEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEE-EEEECSSSSCEEEEEETTSCEEEEETTTBEEEE
T ss_pred             eEEEEECCCCCEEEEEECCCCceeEEEEeeCCCCcceecCCCCCce-EEEECCCCCeEEEEEeCCCeEEEEECCCCeEee
Confidence            457899998876643 322    46777764222222222334455 889999885 45655556777765  333  22


Q ss_pred             EEecccCCccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEec-C-------CCCCc
Q 026389          149 VLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILL-D-------SLFFA  220 (239)
Q Consensus       149 ~l~~~~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~-~-------~l~~p  220 (239)
                      .+.    +. -...+.+++.|||+++++-+.                 .|.|..||..+++..... .       .-...
T Consensus       185 ~l~----~H-~~~V~~v~fspdg~~las~s~-----------------D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V  242 (611)
T 1nr0_A          185 TFG----EH-TKFVHSVRYNPDGSLFASTGG-----------------DGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSV  242 (611)
T ss_dssp             EEC----CC-SSCEEEEEECTTSSEEEEEET-----------------TSCEEEEETTTCCEEEECBCTTSSSCSSSSCE
T ss_pred             eec----cc-cCceEEEEECCCCCEEEEEEC-----------------CCcEEEEECCCCcEeeeeccccccccccCCCE
Confidence            222    21 134789999999998887654                 578888997766654433 2       22346


Q ss_pred             ceEEEcCCCCEEEEE
Q 026389          221 NGVALSKDEDYLVVC  235 (239)
Q Consensus       221 nGia~s~dg~~lyva  235 (239)
                      ++++|+|||++|+.+
T Consensus       243 ~~v~~spdg~~l~s~  257 (611)
T 1nr0_A          243 FGLTWSPDGTKIASA  257 (611)
T ss_dssp             EEEEECTTSSEEEEE
T ss_pred             EEEEECCCCCEEEEE
Confidence            789999999987654

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=97.82  E-value=0.0007  Score=58.93  Aligned_cols=141  Identities=10%  Similarity=0.093  Sum_probs=84.5

Q ss_pred             cCCcceEEEcCCCCEEEEeCCCeEEEEecC-C-cEEE-e-------eeccCcCccCeEEcCCC-CEEEEeCCCCeEEEc-
Q 026389           76 LNGPEDVCVDRNGVLYTATRDGWIKRLHKN-G-TWEN-W-------KLIGGDTLLGITTTQEN-EILVCDADKGLLKVT-  143 (239)
Q Consensus        76 ~~gPe~ia~d~~G~ly~~~~~g~I~~~~~~-G-~~~~-~-------~~~~~~p~~Gl~~d~~G-~L~v~d~~~g~~~v~-  143 (239)
                      -..-.+++|.++|.++++..++.|..|+.. + +... +       ........ .++++++| +++++-...|.+++. 
T Consensus       177 ~~~v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~p~~~~~l~s~~~dg~i~iwd  255 (447)
T 3dw8_B          177 TYHINSISINSDYETYLSADDLRINLWHLEITDRSFNIVDIKPANMEELTEVIT-AAEFHPNSCNTFVYSSSKGTIRLCD  255 (447)
T ss_dssp             SSCCCEEEECTTSSEEEEECSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEE-EEEECSSCTTEEEEEETTSCEEEEE
T ss_pred             CcceEEEEEcCCCCEEEEeCCCeEEEEECCCCCceeeeeecccccccccCcceE-EEEECCCCCcEEEEEeCCCeEEEEE
Confidence            345668999999987755589999999975 2 2211 1       11223355 88999998 777776667777665 


Q ss_pred             -cCC-c-----eEEecccCCcc-------ccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCC-C
Q 026389          144 -EEG-V-----TVLASHVNGSR-------INLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSL-N  208 (239)
Q Consensus       144 -~~g-~-----~~l~~~~~g~~-------~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~-~  208 (239)
                       ..+ .     ..+........       ......++++++|+++++...                  |.|..||..+ +
T Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~------------------~~v~iwd~~~~~  317 (447)
T 3dw8_B          256 MRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY------------------LSVKVWDLNMEN  317 (447)
T ss_dssp             TTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES------------------SEEEEEETTCCS
T ss_pred             CcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC------------------CeEEEEeCCCCc
Confidence             344 2     22221110000       014688999999987776432                  6788888864 4


Q ss_pred             eEEEecCCCCC----------------cceEEEcCCCCEEEEE
Q 026389          209 ETSILLDSLFF----------------ANGVALSKDEDYLVVC  235 (239)
Q Consensus       209 ~~~~~~~~l~~----------------pnGia~s~dg~~lyva  235 (239)
                      +......+...                ...++|+|||++|+.+
T Consensus       318 ~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~  360 (447)
T 3dw8_B          318 RPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTG  360 (447)
T ss_dssp             SCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEE
T ss_pred             cccceeeccccccccccccccccccccceEEEECCCCCEEEEe
Confidence            32211111111                1239999999987654

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=97.81  E-value=0.00093  Score=60.48  Aligned_cols=135  Identities=13%  Similarity=0.146  Sum_probs=88.7

Q ss_pred             cceEEEcC--CCCEE-EEeCCCeEEEEec-CC--------cE-EEeeeccCcCccCeEEcCCCCEEEEeCCC----CeEE
Q 026389           79 PEDVCVDR--NGVLY-TATRDGWIKRLHK-NG--------TW-ENWKLIGGDTLLGITTTQENEILVCDADK----GLLK  141 (239)
Q Consensus        79 Pe~ia~d~--~G~ly-~~~~~g~I~~~~~-~G--------~~-~~~~~~~~~p~~Gl~~d~~G~L~v~d~~~----g~~~  141 (239)
                      ..++++++  +|.++ +++.+|.|..|+. ++        +. ..+........ .+++.++|+.+++-...    +.+.
T Consensus        67 v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~s~~~~~l~~~~~~~~~~~~v~  145 (615)
T 1pgu_A           67 VTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPIS-DISWDFEGRRLCVVGEGRDNFGVFI  145 (615)
T ss_dssp             EEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEE-EEEECTTSSEEEEEECCSSCSEEEE
T ss_pred             EEEEEECcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEE-EEEEeCCCCEEEEeccCCCCccEEE
Confidence            57899999  98755 6678999998886 33        21 22222334556 89999999765554332    4566


Q ss_pred             EccCC--ceEEecccCCccccccccEEEcCCCC-EEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecCCC-
Q 026389          142 VTEEG--VTVLASHVNGSRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSL-  217 (239)
Q Consensus       142 v~~~g--~~~l~~~~~g~~~~~pn~l~vd~dG~-iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~~l-  217 (239)
                      +...+  ...+...     -...+.+++.++|. ++++...                 .|.|..||..+++......+. 
T Consensus       146 ~~d~~~~~~~~~~~-----~~~v~~~~~~~~~~~~l~~~~~-----------------d~~v~vwd~~~~~~~~~~~~~~  203 (615)
T 1pgu_A          146 SWDSGNSLGEVSGH-----SQRINACHLKQSRPMRSMTVGD-----------------DGSVVFYQGPPFKFSASDRTHH  203 (615)
T ss_dssp             ETTTCCEEEECCSC-----SSCEEEEEECSSSSCEEEEEET-----------------TTEEEEEETTTBEEEEEECSSS
T ss_pred             EEECCCcceeeecC-----CccEEEEEECCCCCcEEEEEeC-----------------CCcEEEEeCCCcceeeeecccC
Confidence            65444  3333211     12467899999996 5665543                 588999998877665544433 


Q ss_pred             C---CcceEEEcCC-CCEEEEEe
Q 026389          218 F---FANGVALSKD-EDYLVVCE  236 (239)
Q Consensus       218 ~---~pnGia~s~d-g~~lyvad  236 (239)
                      .   ..+.++|+|| +++|+++.
T Consensus       204 ~~~~~v~~~~~~~~~~~~l~~~~  226 (615)
T 1pgu_A          204 KQGSFVRDVEFSPDSGEFVITVG  226 (615)
T ss_dssp             CTTCCEEEEEECSTTCCEEEEEE
T ss_pred             CCCceEEEEEECCCCCCEEEEEe
Confidence            3   4678999999 99887654

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=97.80  E-value=0.00019  Score=60.23  Aligned_cols=132  Identities=12%  Similarity=0.042  Sum_probs=78.3

Q ss_pred             EcCCCCEE-EEeCCCeEEEEecC-CcEEEeeeccCcCccCeEEcC---CCCEEEEeCCCCeEEEc--cCC--ceEEe-cc
Q 026389           84 VDRNGVLY-TATRDGWIKRLHKN-GTWENWKLIGGDTLLGITTTQ---ENEILVCDADKGLLKVT--EEG--VTVLA-SH  153 (239)
Q Consensus        84 ~d~~G~ly-~~~~~g~I~~~~~~-G~~~~~~~~~~~p~~Gl~~d~---~G~L~v~d~~~g~~~v~--~~g--~~~l~-~~  153 (239)
                      +++++.++ ++..+|.|..|+.. ++............ .+++++   +++.+++....|.+++.  ..+  ...+. ..
T Consensus       176 ~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~v~-~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~  254 (357)
T 3i2n_A          176 YNQEERVVCAGYDNGDIKLFDLRNMALRWETNIKNGVC-SLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVS  254 (357)
T ss_dssp             CC-CCCEEEEEETTSEEEEEETTTTEEEEEEECSSCEE-EEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEE
T ss_pred             cCCCCCEEEEEccCCeEEEEECccCceeeecCCCCceE-EEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeec
Confidence            56777655 66688999999964 44433333445566 899998   78766655556666554  233  22221 01


Q ss_pred             cCCccccccccEEEcCCCC-EEEEeCCCCcCcccccccceeecCCceEEEEeCCCC--------------------eEEE
Q 026389          154 VNGSRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLN--------------------ETSI  212 (239)
Q Consensus       154 ~~g~~~~~pn~l~vd~dG~-iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~--------------------~~~~  212 (239)
                      ..+. -.....+++.++|. ++++...                 .|.|..||...+                    .+..
T Consensus       255 ~~~~-~~~v~~~~~~~~~~~~l~~~~~-----------------dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~  316 (357)
T 3i2n_A          255 EKAH-KSTVWQVRHLPQNRELFLTAGG-----------------AGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQN  316 (357)
T ss_dssp             EECC-SSCEEEEEEETTEEEEEEEEET-----------------TSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEE
T ss_pred             cCCC-cCCEEEEEECCCCCcEEEEEeC-----------------CCcEEEeecCCCcccccccCCCCccccccccceeec
Confidence            1111 13467899999997 5665443                 466777765432                    1222


Q ss_pred             ecCCCCCcceEEEcCCCCEEEE
Q 026389          213 LLDSLFFANGVALSKDEDYLVV  234 (239)
Q Consensus       213 ~~~~l~~pnGia~s~dg~~lyv  234 (239)
                      +...-...+.++|+|||++|++
T Consensus       317 ~~~~~~~v~~~~~s~~~~~l~~  338 (357)
T 3i2n_A          317 VTLSTQPISSLDWSPDKRGLCV  338 (357)
T ss_dssp             EECCSSCEEEEEECSSSTTEEE
T ss_pred             cccCCCCeeEEEEcCCCCeEEE
Confidence            3333345688999999998874

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=97.79  E-value=0.00011  Score=63.49  Aligned_cols=109  Identities=11%  Similarity=0.039  Sum_probs=69.1

Q ss_pred             CCcceEEEcCCC-C-EEEEeCCC---eEEEEecC-C-c-EEEee-eccCcCccCeEEcC-CCCEEEEeCCCCeEEEc--c
Q 026389           77 NGPEDVCVDRNG-V-LYTATRDG---WIKRLHKN-G-T-WENWK-LIGGDTLLGITTTQ-ENEILVCDADKGLLKVT--E  144 (239)
Q Consensus        77 ~gPe~ia~d~~G-~-ly~~~~~g---~I~~~~~~-G-~-~~~~~-~~~~~p~~Gl~~d~-~G~L~v~d~~~g~~~v~--~  144 (239)
                      ....+++|+++| . ++++..++   .|..|+.. + + ...+. ....... .+++.+ +++++++-...+.+++.  .
T Consensus       215 ~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~-~~~~s~~~~~~l~s~~~dg~v~~wd~~  293 (416)
T 2pm9_A          215 QQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGIL-SLDWCHQDEHLLLSSGRDNTVLLWNPE  293 (416)
T ss_dssp             CCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEE-EEEECSSCSSCEEEEESSSEEEEECSS
T ss_pred             CceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCcee-EEEeCCCCCCeEEEEeCCCCEEEeeCC
Confidence            346679999986 4 44666777   99999863 2 2 22222 2334456 889988 78777666666777765  3


Q ss_pred             CC--ceEEecccCCccccccccEEEcCCC-CEEEEeCCCCcCcccccccceeecCCceEEEEeCCCC
Q 026389          145 EG--VTVLASHVNGSRINLADDLIAATDG-SIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLN  208 (239)
Q Consensus       145 ~g--~~~l~~~~~g~~~~~pn~l~vd~dG-~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~  208 (239)
                      ++  ...+... .    .....+++.++| .++++.+.                 .|.|..||..++
T Consensus       294 ~~~~~~~~~~~-~----~~v~~~~~s~~~~~~l~s~~~-----------------d~~i~iw~~~~~  338 (416)
T 2pm9_A          294 SAEQLSQFPAR-G----NWCFKTKFAPEAPDLFACASF-----------------DNKIEVQTLQNL  338 (416)
T ss_dssp             SCCEEEEEECS-S----SCCCCEEECTTCTTEEEECCS-----------------SSEEEEEESCCC
T ss_pred             CCccceeecCC-C----CceEEEEECCCCCCEEEEEec-----------------CCcEEEEEccCC
Confidence            44  3333211 1    246789999998 78877654                 466777776543

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=97.79  E-value=0.00013  Score=62.22  Aligned_cols=139  Identities=10%  Similarity=-0.014  Sum_probs=84.3

Q ss_pred             CCcceEEEcCCCC-EEEEeCCCeEEEEecCC-c----EEEeee-ccCcCccCeEEcCCCCEEEEeCCCCeEEEc--cCC-
Q 026389           77 NGPEDVCVDRNGV-LYTATRDGWIKRLHKNG-T----WENWKL-IGGDTLLGITTTQENEILVCDADKGLLKVT--EEG-  146 (239)
Q Consensus        77 ~gPe~ia~d~~G~-ly~~~~~g~I~~~~~~G-~----~~~~~~-~~~~p~~Gl~~d~~G~L~v~d~~~g~~~v~--~~g-  146 (239)
                      ....+++|.++|. |++++.++.|..|+.+. +    ...+.. ...... .+++.++|+++++-...+.+++.  ..+ 
T Consensus       101 ~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~-~~~~~~~~~~l~~~~~d~~i~iwd~~~~~  179 (377)
T 3dwl_C          101 RAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTIL-SLDWHPNNVLLAAGCADRKAYVLSAYVRD  179 (377)
T ss_dssp             SCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEE-EEEECTTSSEEEEEESSSCEEEEEECCSS
T ss_pred             CceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeE-EEEEcCCCCEEEEEeCCCEEEEEEEEecc
Confidence            3456789998875 55777999999988643 2    233333 344556 89999999877765555666553  211 


Q ss_pred             c---------------eEEecccCCccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeE-
Q 026389          147 V---------------TVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNET-  210 (239)
Q Consensus       147 ~---------------~~l~~~~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~-  210 (239)
                      .               ..+...+ + .-...+.++++++|+++++.+.                 .|.|..||..+++. 
T Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~v~~~~~sp~~~~l~~~~~-----------------d~~i~iwd~~~~~~~  240 (377)
T 3dwl_C          180 VDAKPEASVWGSRLPFNTVCAEY-P-SGGWVHAVGFSPSGNALAYAGH-----------------DSSVTIAYPSAPEQP  240 (377)
T ss_dssp             CC-CCCSCSSCSCCCEEEEEECC-C-CSSSEEEEEECTTSSCEEEEET-----------------TTEEC-CEECSTTSC
T ss_pred             cCCCccccccccccchhhhhhcc-c-CCceEEEEEECCCCCEEEEEeC-----------------CCcEEEEECCCCCCc
Confidence            0               1111111 1 1134678999999976555433                 47788888766543 


Q ss_pred             ----EEecCCCCCcceEEEcCCCCEEEEE
Q 026389          211 ----SILLDSLFFANGVALSKDEDYLVVC  235 (239)
Q Consensus       211 ----~~~~~~l~~pnGia~s~dg~~lyva  235 (239)
                          ..+...-.....++|+|||++|..+
T Consensus       241 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~  269 (377)
T 3dwl_C          241 PRALITVKLSQLPLRSLLWANESAIVAAG  269 (377)
T ss_dssp             EEECCCEECSSSCEEEEEEEETTEEEEEE
T ss_pred             ceeeEeecCCCCceEEEEEcCCCCEEEEE
Confidence                2222333446789999999877654

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=97.77  E-value=0.00013  Score=72.56  Aligned_cols=135  Identities=15%  Similarity=0.115  Sum_probs=84.5

Q ss_pred             CcceEEEcCCCCEEEEeCCCeEEEEec-CCc-EEEeeeccCcCccCeEEcCCCCEEEEeCCCCeEEEc--cCC--ceEEe
Q 026389           78 GPEDVCVDRNGVLYTATRDGWIKRLHK-NGT-WENWKLIGGDTLLGITTTQENEILVCDADKGLLKVT--EEG--VTVLA  151 (239)
Q Consensus        78 gPe~ia~d~~G~ly~~~~~g~I~~~~~-~G~-~~~~~~~~~~p~~Gl~~d~~G~L~v~d~~~g~~~v~--~~g--~~~l~  151 (239)
                      ...++++.+++.+++++.+|.|..|+. +|+ ...+....+... .+++.++|+.+++....+.+++.  .++  ...+.
T Consensus      1046 ~v~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~-~~~~s~d~~~l~s~s~d~~v~iwd~~~~~~~~~l~ 1124 (1249)
T 3sfz_A         1046 TVKDFRLLQDSRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVL-SCAISSDATKFSSTSADKTAKIWSFDLLSPLHELK 1124 (1249)
T ss_dssp             CEEEEEECSSSEEEEEESSSEEEEEETTTTCCCEEEECCSSCCC-CEEECSSSSSCEEECCSSCCCEECSSSSSCSBCCC
T ss_pred             cEEEEEEcCCCcEEEEECCCcEEEEECCCCceeEEEcccCCcEE-EEEECCCCCEEEEEcCCCcEEEEECCCcceeeeec
Confidence            455688888899999999999999996 454 334444455667 99999999776666656666654  344  22222


Q ss_pred             cccCCccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEec----------CCCCCcc
Q 026389          152 SHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILL----------DSLFFAN  221 (239)
Q Consensus       152 ~~~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~----------~~l~~pn  221 (239)
                          +. -...+.+++.+||.+.++.+.                 .|.|..||..+++.....          ..-...+
T Consensus      1125 ----~h-~~~v~~~~~s~dg~~lat~~~-----------------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~ 1182 (1249)
T 3sfz_A         1125 ----GH-NGCVRCSAFSLDGILLATGDD-----------------NGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVT 1182 (1249)
T ss_dssp             ----CC-SSCEEEEEECSSSSEEEEEET-----------------TSCCCEEESSSSCCCCCCCCCC-------CCSCCC
T ss_pred             ----cC-CCcEEEEEECCCCCEEEEEeC-----------------CCEEEEEECCCCceEEEeccccccccccccCceEE
Confidence                11 123578999999987766543                 355666665544422111          1122356


Q ss_pred             eEEEcCCCCEEEEE
Q 026389          222 GVALSKDEDYLVVC  235 (239)
Q Consensus       222 Gia~s~dg~~lyva  235 (239)
                      +++|+|||++|+.+
T Consensus      1183 ~l~fs~dg~~l~s~ 1196 (1249)
T 3sfz_A         1183 DVCFSPDSKTLVSA 1196 (1249)
T ss_dssp             EEEECTTSSCEEEE
T ss_pred             EEEECCCCCEEEEC
Confidence            67777777766554

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=97.75  E-value=0.00021  Score=66.19  Aligned_cols=141  Identities=13%  Similarity=0.058  Sum_probs=84.8

Q ss_pred             eEEEc--CCCC--EEEEe-CCCeEEEEecC----CcEEEeee-----ccCcCccCeEEcCCCC-EEEEeCC---------
Q 026389           81 DVCVD--RNGV--LYTAT-RDGWIKRLHKN----GTWENWKL-----IGGDTLLGITTTQENE-ILVCDAD---------  136 (239)
Q Consensus        81 ~ia~d--~~G~--ly~~~-~~g~I~~~~~~----G~~~~~~~-----~~~~p~~Gl~~d~~G~-L~v~d~~---------  136 (239)
                      .+++.  |||+  |+++. .+.+|+.++.+    |+...+..     ...... ++++.+||+ |+.+...         
T Consensus        81 ~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~-~~~~spDg~~l~~~~~~~~~~~~~~~  159 (662)
T 3azo_A           81 PWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWA-DPVLLPERGEVWCMAEEFTGEGPSDV  159 (662)
T ss_dssp             CEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEE-EEEEETTTTEEEEEEEEECSSSTTCE
T ss_pred             cceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCCCEeccCCccCCCCcccc-CcEECCCCCEEEEEEecccCCCCCCc
Confidence            34455  7774  55554 57899999977    65555443     234556 789999996 4444322         


Q ss_pred             -CCeEEEc-cC------C-ceEEecccCCccccccccEEEcCCCC-EEEEeCCCCcCcccccccceeecCCceEEEEeCC
Q 026389          137 -KGLLKVT-EE------G-VTVLASHVNGSRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPS  206 (239)
Q Consensus       137 -~g~~~v~-~~------g-~~~l~~~~~g~~~~~pn~l~vd~dG~-iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~  206 (239)
                       ..++.++ ..      + .+.+..  .+.  .+...++++|||+ |+++.....  ...|        ....|+.+|.+
T Consensus       160 ~~~i~~~~~~~~~~~~~~~~~~l~~--~~~--~~~~~~~~SpDG~~la~~~~~~~--~~~~--------~~~~i~~~d~~  225 (662)
T 3azo_A          160 RRFLAAVPLDGSAAADRSAVRELSD--DAH--RFVTGPRLSPDGRQAVWLAWDHP--RMPW--------EGTELKTARVT  225 (662)
T ss_dssp             EEEEEEEETTSTTTTCGGGSEESSC--SCS--SEECCCEECTTSSEEEEEEECTT--CCTT--------TCEEEEEEEEC
T ss_pred             eeEEEEEECCCCccccCCceeEEEe--cCC--CcccCceECCCCCEEEEEECCCC--CCCC--------CCcEEEEEEEC
Confidence             2345555 44      5 444430  111  3456789999995 666653310  0000        12579999987


Q ss_pred             -CC---eEEEecCC-CCCcceEEEcCCCCEEEEEe
Q 026389          207 -LN---ETSILLDS-LFFANGVALSKDEDYLVVCE  236 (239)
Q Consensus       207 -~~---~~~~~~~~-l~~pnGia~s~dg~~lyvad  236 (239)
                       ++   +.+.+..+ -.....++|+|||+.+|+++
T Consensus       226 ~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~  260 (662)
T 3azo_A          226 EDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVATD  260 (662)
T ss_dssp             TTSCEEEEEEEEEETTBCEEEEEECTTSCEEEEEC
T ss_pred             CCCcccccEEeCCCCCceEcceEECCCCeEEEEEC
Confidence             46   56666544 35678899999999555554

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=97.75  E-value=0.0013  Score=61.54  Aligned_cols=136  Identities=17%  Similarity=0.151  Sum_probs=88.8

Q ss_pred             CcceEEEcCCCC-EEEEeCCCeEEEEecCCcEEEeeec--c---CcCccCeEEcCCC--CEEEEeCCCCeEEEc--cCC-
Q 026389           78 GPEDVCVDRNGV-LYTATRDGWIKRLHKNGTWENWKLI--G---GDTLLGITTTQEN--EILVCDADKGLLKVT--EEG-  146 (239)
Q Consensus        78 gPe~ia~d~~G~-ly~~~~~g~I~~~~~~G~~~~~~~~--~---~~p~~Gl~~d~~G--~L~v~d~~~g~~~v~--~~g-  146 (239)
                      .-.+++++++|+ |++++.|+.|..|+..+........  .   .... .+++.+++  .++++-...+.+++.  .++ 
T Consensus       474 ~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~-~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~  552 (694)
T 3dm0_A          474 DVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVS-CVRFSPNTLQPTIVSASWDKTVKVWNLSNCK  552 (694)
T ss_dssp             CEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEE-EEEECSCSSSCEEEEEETTSCEEEEETTTCC
T ss_pred             CEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEE-EEEEeCCCCcceEEEEeCCCeEEEEECCCCc
Confidence            345788998775 5677799999999875543221111  1   1234 67888776  455655556777765  344 


Q ss_pred             -ceEEecccCCccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecCCCCCcceEEE
Q 026389          147 -VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVAL  225 (239)
Q Consensus       147 -~~~l~~~~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~~l~~pnGia~  225 (239)
                       ...+...     -...+.++++++|+++++.+.                 .|.|..||..+++.......-...+.++|
T Consensus       553 ~~~~~~~h-----~~~v~~v~~spdg~~l~sg~~-----------------Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~  610 (694)
T 3dm0_A          553 LRSTLAGH-----TGYVSTVAVSPDGSLCASGGK-----------------DGVVLLWDLAEGKKLYSLEANSVIHALCF  610 (694)
T ss_dssp             EEEEECCC-----SSCEEEEEECTTSSEEEEEET-----------------TSBCEEEETTTTEEEECCBCSSCEEEEEE
T ss_pred             EEEEEcCC-----CCCEEEEEEeCCCCEEEEEeC-----------------CCeEEEEECCCCceEEEecCCCcEEEEEE
Confidence             2333211     124688999999988887654                 57888999887765444444455788999


Q ss_pred             cCCCCEEEEEe
Q 026389          226 SKDEDYLVVCE  236 (239)
Q Consensus       226 s~dg~~lyvad  236 (239)
                      +|++.+|..+.
T Consensus       611 sp~~~~l~~~~  621 (694)
T 3dm0_A          611 SPNRYWLCAAT  621 (694)
T ss_dssp             CSSSSEEEEEE
T ss_pred             cCCCcEEEEEc
Confidence            99998776543

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=97.75  E-value=0.0013  Score=54.95  Aligned_cols=138  Identities=8%  Similarity=0.037  Sum_probs=88.6

Q ss_pred             CcceEEEcCCCCEEEEeCCCeEEEEecCC--c--EEEee-eccCcCccCeEEcC-CCCEEEEeCCCCeEEEc---cC---
Q 026389           78 GPEDVCVDRNGVLYTATRDGWIKRLHKNG--T--WENWK-LIGGDTLLGITTTQ-ENEILVCDADKGLLKVT---EE---  145 (239)
Q Consensus        78 gPe~ia~d~~G~ly~~~~~g~I~~~~~~G--~--~~~~~-~~~~~p~~Gl~~d~-~G~L~v~d~~~g~~~v~---~~---  145 (239)
                      ...++++++++ ++++..++.|..|+...  +  ..... ....... .+++.+ +|+++++....|.+++.   ..   
T Consensus       152 ~v~~~~~~~~~-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~-~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~  229 (342)
T 1yfq_A          152 KIFTMDTNSSR-LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIR-DVALLPKEQEGYACSSIDGRVAVEFFDDQGDD  229 (342)
T ss_dssp             CEEEEEECSSE-EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEE-EEEECSGGGCEEEEEETTSEEEEEECCTTCCS
T ss_pred             ceEEEEecCCc-EEEEeCCCeEEEEECCccccccceeeecCCCCcee-EEEECCCCCCEEEEEecCCcEEEEEEcCCCcc
Confidence            46678999887 88889999999999643  2  22222 2234455 889998 88877776667777663   23   


Q ss_pred             ---C-ceEEecccC---C-ccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecCCC
Q 026389          146 ---G-VTVLASHVN---G-SRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSL  217 (239)
Q Consensus       146 ---g-~~~l~~~~~---g-~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~~l  217 (239)
                         . ...+.....   + ......+.++++++|+++++...                 .|.|..||..+++......+.
T Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-----------------dg~i~vwd~~~~~~~~~~~~~  292 (342)
T 1yfq_A          230 YNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGS-----------------DGIISCWNLQTRKKIKNFAKF  292 (342)
T ss_dssp             TTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEET-----------------TSCEEEEETTTTEEEEECCCC
T ss_pred             cccccceeeecccccccccccceeEEEEEEcCCCCEEEEecC-----------------CceEEEEcCccHhHhhhhhcc
Confidence               2 233322111   0 00125788999999975555433                 488999999888765554443


Q ss_pred             --CCcceEEEcCCCCEEEEEe
Q 026389          218 --FFANGVALSKDEDYLVVCE  236 (239)
Q Consensus       218 --~~pnGia~s~dg~~lyvad  236 (239)
                        ...+.++  +||++|+.+-
T Consensus       293 h~~~v~~~~--~~~~~l~s~s  311 (342)
T 1yfq_A          293 NEDSVVKIA--CSDNILCLAT  311 (342)
T ss_dssp             SSSEEEEEE--ECSSEEEEEE
T ss_pred             cCCCceEec--CCCCeEEEEe
Confidence              3345666  8999877653

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=97.74  E-value=0.00024  Score=69.93  Aligned_cols=132  Identities=7%  Similarity=-0.017  Sum_probs=85.8

Q ss_pred             CcceEEEc-CCCC-EEEEeCCCeEEEEecC-CcEEEeeeccC-cCccCeEEcCCCC-EEEEeCCCCeE-EEcc-CC-ceE
Q 026389           78 GPEDVCVD-RNGV-LYTATRDGWIKRLHKN-GTWENWKLIGG-DTLLGITTTQENE-ILVCDADKGLL-KVTE-EG-VTV  149 (239)
Q Consensus        78 gPe~ia~d-~~G~-ly~~~~~g~I~~~~~~-G~~~~~~~~~~-~p~~Gl~~d~~G~-L~v~d~~~g~~-~v~~-~g-~~~  149 (239)
                      ...+++|+ |+|. |.++. ++.|+.++.+ ++...+....+ ... .+++. +|+ |+.+.....++ .++. .+ .+.
T Consensus       297 ~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~~  373 (1045)
T 1k32_A          297 SKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLKVPEPLRIRYV-RRGGD-TKVAFIHGTREGDFLGIYDYRTGKAEK  373 (1045)
T ss_dssp             GGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEEECSCCSCEEEE-EECSS-SEEEEEEEETTEEEEEEEETTTCCEEE
T ss_pred             ccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceEEccCCCcceEE-eeeEc-CCCeEEEEECCCceEEEEECCCCCceE
Confidence            36789999 9986 44444 8899999864 44443333333 455 67787 874 55444434455 4453 34 443


Q ss_pred             EecccCCccccccccEEEcCCCC-EEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecCC-CCCcceEEEcC
Q 026389          150 LASHVNGSRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDS-LFFANGVALSK  227 (239)
Q Consensus       150 l~~~~~g~~~~~pn~l~vd~dG~-iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~~-l~~pnGia~s~  227 (239)
                      +. . .   ......++++|||+ |+++..                  .+.|+.+|.++++...+..+ ......++|||
T Consensus       374 l~-~-~---~~~~~~~~~SpDG~~la~~~~------------------~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~Sp  430 (1045)
T 1k32_A          374 FE-E-N---LGNVFAMGVDRNGKFAVVAND------------------RFEIMTVDLETGKPTVIERSREAMITDFTISD  430 (1045)
T ss_dssp             CC-C-C---CCSEEEEEECTTSSEEEEEET------------------TSEEEEEETTTCCEEEEEECSSSCCCCEEECT
T ss_pred             ec-C-C---ccceeeeEECCCCCEEEEECC------------------CCeEEEEECCCCceEEeccCCCCCccceEECC
Confidence            33 1 1   13467899999996 444442                  36899999998888777633 33448899999


Q ss_pred             CCCEEEEE
Q 026389          228 DEDYLVVC  235 (239)
Q Consensus       228 dg~~lyva  235 (239)
                      ||++|+++
T Consensus       431 DG~~la~~  438 (1045)
T 1k32_A          431 NSRFIAYG  438 (1045)
T ss_dssp             TSCEEEEE
T ss_pred             CCCeEEEE
Confidence            99988665

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=97.73  E-value=0.00096  Score=58.27  Aligned_cols=115  Identities=17%  Similarity=0.135  Sum_probs=71.4

Q ss_pred             CCEEEEeCCCeEEEEecCCc-E---EEee-------eccCcCccC---eEEcCCC-CEEEEeCC----------CCeEEE
Q 026389           88 GVLYTATRDGWIKRLHKNGT-W---ENWK-------LIGGDTLLG---ITTTQEN-EILVCDAD----------KGLLKV  142 (239)
Q Consensus        88 G~ly~~~~~g~I~~~~~~G~-~---~~~~-------~~~~~p~~G---l~~d~~G-~L~v~d~~----------~g~~~v  142 (239)
                      +.+|+.+..++++.+|..+. .   ..+.       ....+|. |   ++++++| +|||+...          ..+..+
T Consensus       225 ~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~-g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VI  303 (373)
T 2mad_H          225 GRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPG-GWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSV  303 (373)
T ss_pred             CEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecC-ceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEE
Confidence            45555455677888876432 1   1111       1222466 6   8889887 79997642          235556


Q ss_pred             c-cCC--ceEEecccCCccccccccEEEcCCCC--EEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEe-cCC
Q 026389          143 T-EEG--VTVLASHVNGSRINLADDLIAATDGS--IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSIL-LDS  216 (239)
Q Consensus       143 ~-~~g--~~~l~~~~~g~~~~~pn~l~vd~dG~--iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~-~~~  216 (239)
                      | ..+  +..+.   -+   ..|+++++++||+  +|++...                 .+.|..||.+++++... ...
T Consensus       304 D~~t~~vv~~i~---~g---~~p~~i~~s~Dg~~~l~v~~~~-----------------~~~V~ViD~~t~~vv~~i~~v  360 (373)
T 2mad_H          304 TGLVGQTSSQIS---LG---HDVDAISVAQDGGPDLYALSAG-----------------TEVLHIYDAGAGDQDQSTVEL  360 (373)
T ss_pred             ECCCCEEEEEEE---CC---CCcCeEEECCCCCeEEEEEcCC-----------------CCeEEEEECCCCCEEeeecCC
Confidence            6 344  23331   12   2589999999997  4554422                 47999999998887665 455


Q ss_pred             CCCcceEEEc
Q 026389          217 LFFANGVALS  226 (239)
Q Consensus       217 l~~pnGia~s  226 (239)
                      -..|++|...
T Consensus       361 G~~P~~~~~~  370 (373)
T 2mad_H          361 GSGPQVLSVM  370 (373)
T ss_pred             CCCCcEEEEc
Confidence            6789988764

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=97.72  E-value=0.0004  Score=64.32  Aligned_cols=134  Identities=13%  Similarity=-0.008  Sum_probs=82.4

Q ss_pred             CCcceEEEcCCCCEEEE-eCCCeE------------------EEEecCCcEEEe---e---------eccCcCccCeEEc
Q 026389           77 NGPEDVCVDRNGVLYTA-TRDGWI------------------KRLHKNGTWENW---K---------LIGGDTLLGITTT  125 (239)
Q Consensus        77 ~gPe~ia~d~~G~ly~~-~~~g~I------------------~~~~~~G~~~~~---~---------~~~~~p~~Gl~~d  125 (239)
                      .+-.+++|+|||.++++ +.|+.|                  ..+.|+|....|   .         ....... ++++.
T Consensus        16 ~~v~sv~~SpDG~~iASas~D~TV~d~~~~~~l~gh~~~v~~V~FsPdg~~~~~~~~~~~~~~~~~~~~~~~V~-~vawS   94 (588)
T 2j04_A           16 DWKNNLTWARDGTLYLTTFPDISIGQPKYAKDINCNSKNLFHVKEFPLEFENKLDFELAQQNGLLNSQPVCYPR-VCKPS   94 (588)
T ss_dssp             SSSCCEEECTTSCEEEECSSSEEEEEECCCSCCSSBGGGTEEEEEECCCCCCTTTTSCCCSSCSSTTSCSCCEE-EEEEC
T ss_pred             ccEEEEEECCCCCEEEEEcCCceeecccccceecCCCccEEEEEECCCCCcceEEEEeCCCceEeecCCCCcEE-EEEEC
Confidence            46678999999999966 477777                  334454421111   0         0122345 78999


Q ss_pred             CCCCEEEEeCCCCeEEEc-cCC-ceEEecccCCccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEE
Q 026389          126 QENEILVCDADKGLLKVT-EEG-VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKY  203 (239)
Q Consensus       126 ~~G~L~v~d~~~g~~~v~-~~g-~~~l~~~~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~  203 (239)
                      ++|..+++-...|.+++. .++ ...+. .....+-...+.+++.|||++.++.+.                 .|.|..|
T Consensus        95 PdG~~LAs~s~dg~V~iwd~~~~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~-----------------DGtVkIW  156 (588)
T 2j04_A           95 PIDDWMAVLSNNGNVSVFKDNKMLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNE-----------------DGELQFF  156 (588)
T ss_dssp             SSSSCEEEEETTSCEEEEETTEEEEECC-CSSCSTTTCEEEEEECSSSSCEEEEET-----------------TSEEEEE
T ss_pred             CCCCEEEEEeCCCcEEEEeCCceeeecc-CCCccccccEEEEEEcCCCCEEEEEcC-----------------CCEEEEE
Confidence            999877666667777776 344 33322 110001124678999999965555433                 4889999


Q ss_pred             eCCCCe--------EEEecCC----CCCcceEEEcCCC
Q 026389          204 DPSLNE--------TSILLDS----LFFANGVALSKDE  229 (239)
Q Consensus       204 d~~~~~--------~~~~~~~----l~~pnGia~s~dg  229 (239)
                      |..++.        +..+..+    ......++|+|||
T Consensus       157 d~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg  194 (588)
T 2j04_A          157 SIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV  194 (588)
T ss_dssp             ECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE
T ss_pred             ECCCCccccccceeeeeeecccccccccEEEEEEcCCc
Confidence            988774        3444222    2356889999998

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=97.70  E-value=0.00089  Score=63.51  Aligned_cols=131  Identities=10%  Similarity=0.102  Sum_probs=81.7

Q ss_pred             cceEEEcCCCCEEE-EeCCCeEEEEecC-CcEEEeeec----cCcCccCeEEcCCCCEEEEeCCCCeEEEcc-CC-ceEE
Q 026389           79 PEDVCVDRNGVLYT-ATRDGWIKRLHKN-GTWENWKLI----GGDTLLGITTTQENEILVCDADKGLLKVTE-EG-VTVL  150 (239)
Q Consensus        79 Pe~ia~d~~G~ly~-~~~~g~I~~~~~~-G~~~~~~~~----~~~p~~Gl~~d~~G~L~v~d~~~g~~~v~~-~g-~~~l  150 (239)
                      ..+|..|++|+||+ +...+.|+++++. ++.+.+...    ...+. .+..|.+|+||++.. .|+.++++ ++ .+.+
T Consensus       474 i~~i~~d~~g~lWi~~~t~~Gl~~~d~~~~~~~~~~~~~~~~~~~~~-~i~~d~~g~lWigt~-~Gl~~~~~~~~~~~~~  551 (758)
T 3ott_A          474 INQIIPDNEGNVWVLLYNNKGIDKINPRTREVTKLFADELTGEKSPN-YLLCDEDGLLWVGFH-GGVMRINPKDESQQSI  551 (758)
T ss_dssp             EEEEEECTTSCEEEEETTCSSEEEEETTTTEEEEECTTTSCGGGCEE-EEEECTTSCEEEEET-TEEEEECC--CCCCBC
T ss_pred             eeeEEEcCCCCEEEEccCCCCcEEEeCCCCceEEecCCCcCCCcccc-eEEECCCCCEEEEec-CceEEEecCCCceEEe
Confidence            34688899999998 3345679999974 455544211    13456 788899999999975 68999985 44 3333


Q ss_pred             ecccCCccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEec-CCCCCcceEEE-cCC
Q 026389          151 ASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILL-DSLFFANGVAL-SKD  228 (239)
Q Consensus       151 ~~~~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~-~~l~~pnGia~-s~d  228 (239)
                      .  .++-+-+....+..+ +|+||++...                   .|++||+++.+.+..- ....+ ++.++ ++|
T Consensus       552 ~--~~gl~~~~i~~i~~~-~g~lWi~t~~-------------------Gl~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  608 (758)
T 3ott_A          552 S--FGSFSNNEILSMTCV-KNSIWVSTTN-------------------GLWIIDRKTMDARQQNMTNKRF-TSLLFDPKE  608 (758)
T ss_dssp             C--CCC---CCEEEEEEE-TTEEEEEESS-------------------CEEEEETTTCCEEEC--CCCCC-SEEEEETTT
T ss_pred             c--ccCCCccceEEEEEC-CCCEEEECCC-------------------CeEEEcCCCceeEEecCCCCce-eeeEEECCC
Confidence            1  233333456677765 8999999743                   4889999877765431 11222 23333 456


Q ss_pred             CCEEEEE
Q 026389          229 EDYLVVC  235 (239)
Q Consensus       229 g~~lyva  235 (239)
                      |+ ||+.
T Consensus       609 G~-l~fG  614 (758)
T 3ott_A          609 DC-VYLG  614 (758)
T ss_dssp             TE-EEEE
T ss_pred             Cc-EEEe
Confidence            65 5554

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=97.70  E-value=0.0012  Score=58.05  Aligned_cols=136  Identities=13%  Similarity=0.101  Sum_probs=87.5

Q ss_pred             CCcceEEEcC-CCCEE-EEeCCCeEEEEecC-C---c-EEEeeeccCcCccCeEEcCCCC-EEEEeCCCCeEEEc--cC-
Q 026389           77 NGPEDVCVDR-NGVLY-TATRDGWIKRLHKN-G---T-WENWKLIGGDTLLGITTTQENE-ILVCDADKGLLKVT--EE-  145 (239)
Q Consensus        77 ~gPe~ia~d~-~G~ly-~~~~~g~I~~~~~~-G---~-~~~~~~~~~~p~~Gl~~d~~G~-L~v~d~~~g~~~v~--~~-  145 (239)
                      ....+++|++ ++.++ +++.+|.|..|+.. +   + ...+......+. .+++.+++. ++++....|.+++.  .. 
T Consensus       232 ~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~-~i~~~p~~~~~l~tg~~dg~v~vwd~~~~  310 (430)
T 2xyi_A          232 AVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVN-CLSFNPYSEFILATGSADKTVALWDLRNL  310 (430)
T ss_dssp             SCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEE-EEEECSSCTTEEEEEETTSEEEEEETTCT
T ss_pred             CCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeE-EEEeCCCCCCEEEEEeCCCeEEEEeCCCC
Confidence            4577899998 56666 55689999999963 2   2 233333445566 899999885 77776667777765  33 


Q ss_pred             C--ceEEecccCCccccccccEEEcCCC-CEEEEeCCCCcCcccccccceeecCCceEEEEeCCC--------------C
Q 026389          146 G--VTVLASHVNGSRINLADDLIAATDG-SIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSL--------------N  208 (239)
Q Consensus       146 g--~~~l~~~~~g~~~~~pn~l~vd~dG-~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~--------------~  208 (239)
                      +  ...+...     -.....+++.++| .++++...                 .|+|..||...              .
T Consensus       311 ~~~~~~~~~h-----~~~v~~i~~sp~~~~~l~s~~~-----------------d~~i~iwd~~~~~~~~~~~~~~~~~~  368 (430)
T 2xyi_A          311 KLKLHSFESH-----KDEIFQVQWSPHNETILASSGT-----------------DRRLHVWDLSKIGEEQSTEDAEDGPP  368 (430)
T ss_dssp             TSCSEEEECC-----SSCEEEEEECSSCTTEEEEEET-----------------TSCCEEEEGGGTTCCCCHHHHHHCCT
T ss_pred             CCCeEEeecC-----CCCEEEEEECCCCCCEEEEEeC-----------------CCcEEEEeCCCCccccCccccccCCc
Confidence            2  3333221     1246789999998 57777654                 46777777654              1


Q ss_pred             eEEEec-CCCCCcceEEEcCCCCEEEEE
Q 026389          209 ETSILL-DSLFFANGVALSKDEDYLVVC  235 (239)
Q Consensus       209 ~~~~~~-~~l~~pnGia~s~dg~~lyva  235 (239)
                      ++.... ..-..++.++++|++++++++
T Consensus       369 ~~~~~~~~h~~~v~~~~~~p~~~~~l~s  396 (430)
T 2xyi_A          369 ELLFIHGGHTAKISDFSWNPNEPWIICS  396 (430)
T ss_dssp             TEEEECCCCSSCEEEEEECSSSTTEEEE
T ss_pred             ceEEEcCCCCCCceEEEECCCCCCEEEE
Confidence            222222 233458999999999844433

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=97.70  E-value=0.00054  Score=62.70  Aligned_cols=137  Identities=7%  Similarity=0.000  Sum_probs=89.5

Q ss_pred             CcceEEEcCCCCEEEEeCCCeEEEEecC-Cc--EEEeeeccCcCccCe--EEcCCC-CEEEEeCCCCeEEEc--cCC--c
Q 026389           78 GPEDVCVDRNGVLYTATRDGWIKRLHKN-GT--WENWKLIGGDTLLGI--TTTQEN-EILVCDADKGLLKVT--EEG--V  147 (239)
Q Consensus        78 gPe~ia~d~~G~ly~~~~~g~I~~~~~~-G~--~~~~~~~~~~p~~Gl--~~d~~G-~L~v~d~~~g~~~v~--~~g--~  147 (239)
                      .-.+++|.+++.|++++.||.|..||.. ++  ...+........ .+  ++.++| +++++-+..+.+++.  .++  .
T Consensus       268 ~v~sv~~s~~~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~-sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~  346 (524)
T 2j04_B          268 LITTFDFLSPTTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYIL-SVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATT  346 (524)
T ss_dssp             CEEEEEESSSSEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEE-EEEEECCTTSCCEEEEEETTSEEEEECGGGHHHH
T ss_pred             CEEEEEecCCCeEEEEeCCCEEEEEECCCCCCceEEeecccccEE-EEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcc
Confidence            3457888887788899999999999964 42  122322233344 66  456777 888887778888876  344  3


Q ss_pred             eEEecccCCccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeE-EEecCCCCCcceEEEc
Q 026389          148 TVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNET-SILLDSLFFANGVALS  226 (239)
Q Consensus       148 ~~l~~~~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~-~~~~~~l~~pnGia~s  226 (239)
                      ..+.....+   .....+++.|+|..+++.+.                 .+.|..+|..+++. ..+...-...+.|+|+
T Consensus       347 ~~~~~~~~~---~~v~~v~fsp~~~~l~s~~~-----------------d~tv~lwd~~~~~~~~~l~gH~~~V~sva~S  406 (524)
T 2j04_B          347 KTTVSRFRG---SNLVPVVYCPQIYSYIYSDG-----------------ASSLRAVPSRAAFAVHPLVSRETTITAIGVS  406 (524)
T ss_dssp             CEEEEECSC---CSCCCEEEETTTTEEEEECS-----------------SSEEEEEETTCTTCCEEEEECSSCEEEEECC
T ss_pred             ccccccccc---CcccceEeCCCcCeEEEeCC-----------------CCcEEEEECcccccceeeecCCCceEEEEeC
Confidence            333322211   12467999999987777554                 35677888776553 3343344466899999


Q ss_pred             CCCCEEEEE
Q 026389          227 KDEDYLVVC  235 (239)
Q Consensus       227 ~dg~~lyva  235 (239)
                      |||++|..+
T Consensus       407 p~g~~l~Sg  415 (524)
T 2j04_B          407 RLHPMVLAG  415 (524)
T ss_dssp             SSCCBCEEE
T ss_pred             CCCCeEEEE
Confidence            999876543

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=97.69  E-value=0.0004  Score=59.21  Aligned_cols=124  Identities=15%  Similarity=0.221  Sum_probs=72.9

Q ss_pred             cceEEEcCCCCEEEEe-C-------------CCeEEEEecCCcE-EEeeeccCcCccCeEEcCCC-CEEEEe---CC-CC
Q 026389           79 PEDVCVDRNGVLYTAT-R-------------DGWIKRLHKNGTW-ENWKLIGGDTLLGITTTQEN-EILVCD---AD-KG  138 (239)
Q Consensus        79 Pe~ia~d~~G~ly~~~-~-------------~g~I~~~~~~G~~-~~~~~~~~~p~~Gl~~d~~G-~L~v~d---~~-~g  138 (239)
                      +..|.++ ++.||.+. .             .+.|++++.+|.. +.+...    . +.++..+| .||.++   .. ..
T Consensus        57 ~~~i~~~-g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~l~~~----~-~~~~s~~g~~Iy~~~~~~~~~~~  130 (302)
T 3s25_A           57 AMYINAD-KNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTVLDPD----P-CIYASLIGNYIYYLHYDTQTATS  130 (302)
T ss_dssp             EEEEEEC-SSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEEEECS----C-EEEEEEETTEEEEEEESSSSCEE
T ss_pred             eeeEEEc-CCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceEeecC----C-ccEEEEeCCEEEEEeecCCCCce
Confidence            3445444 45777554 3             3579999988753 332221    2 33444444 799988   22 35


Q ss_pred             eEEEccCC--ceEEecccCCccccccccEEEcCCC-CEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecC
Q 026389          139 LLKVTEEG--VTVLASHVNGSRINLADDLIAATDG-SIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLD  215 (239)
Q Consensus       139 ~~~v~~~g--~~~l~~~~~g~~~~~pn~l~vd~dG-~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~  215 (239)
                      +++++.+|  .+.|.....         .+++++| .|||++..                 ..+|++.+.+++..+.+..
T Consensus       131 Iy~~~~dGs~~~~lt~~~~---------~~~~~~g~~iy~t~~g-----------------~~~Iy~~~l~g~~~~~l~~  184 (302)
T 3s25_A          131 LYRIRIDGEEKKKIKNHYL---------FTCNTSDRYFYYNNPK-----------------NGQLYRYDTASQSEALFYD  184 (302)
T ss_dssp             EEEEETTSCCCEEEESSCC---------CCSEEETTEEEEECTT-----------------TCCEEEEETTTTEEEEEEC
T ss_pred             EEEEECCCCCeEEEeCCCc---------eEeeEECCEEEEEeCC-----------------CceEEEEECCCCCEEEEeC
Confidence            56666666  555543211         2345565 89999863                 3578888877766666654


Q ss_pred             CCCCcceEEEcCCCCEEEEEeC
Q 026389          216 SLFFANGVALSKDEDYLVVCET  237 (239)
Q Consensus       216 ~l~~pnGia~s~dg~~lyvadt  237 (239)
                      +   +..++++|++++||+++.
T Consensus       185 ~---~~~~~~~P~g~~iy~t~~  203 (302)
T 3s25_A          185 C---NCYKPVVLDDTNVYYMDV  203 (302)
T ss_dssp             S---CEEEEEEEETTEEEEEEG
T ss_pred             C---CccceeeecCCEEEEEEc
Confidence            3   223456677888887764

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=97.68  E-value=0.0016  Score=60.32  Aligned_cols=135  Identities=16%  Similarity=0.059  Sum_probs=84.9

Q ss_pred             cceEEEcCCCC-EEEEeCCCeEEEEecCCc---------EEEeeec----cCcCccCeEEcCCCCEEEEeCCCCeEEEcc
Q 026389           79 PEDVCVDRNGV-LYTATRDGWIKRLHKNGT---------WENWKLI----GGDTLLGITTTQENEILVCDADKGLLKVTE  144 (239)
Q Consensus        79 Pe~ia~d~~G~-ly~~~~~g~I~~~~~~G~---------~~~~~~~----~~~p~~Gl~~d~~G~L~v~d~~~g~~~v~~  144 (239)
                      -.+++|+|||+ |++++.||+|..|+..++         ..++...    ..... .+++.++| +.++..++.+...+.
T Consensus       132 v~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~-sVawSPdg-Laass~D~tVrlWd~  209 (588)
T 2j04_A          132 YHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVT-HIVWYEDV-LVAALSNNSVFSMTV  209 (588)
T ss_dssp             EEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEE-EEEEETTE-EEEEETTCCEEEECC
T ss_pred             EEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEE-EEEEcCCc-EEEEeCCCeEEEEEC
Confidence            55799999885 567889999999996543         2333111    13556 89999999 555555444444443


Q ss_pred             CC--c-eEEecccCCccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEec-CCCCCc
Q 026389          145 EG--V-TVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILL-DSLFFA  220 (239)
Q Consensus       145 ~g--~-~~l~~~~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~-~~l~~p  220 (239)
                      ++  . ++......+.. ....++++.  |...++.+                  .+.|..||..+++...+. .....-
T Consensus       210 ~~~~~~~~~~tL~~~h~-~~V~svaFs--g~~LASa~------------------~~tIkLWd~~~~~~~~~~~gh~~~V  268 (588)
T 2j04_A          210 SASSHQPVSRMIQNASR-RKITDLKIV--DYKVVLTC------------------PGYVHKIDLKNYSISSLKTGSLENF  268 (588)
T ss_dssp             CSSSSCCCEEEEECCCS-SCCCCEEEE--TTEEEEEC------------------SSEEEEEETTTTEEEEEECSCCSCC
T ss_pred             CCCccccceeeeccccc-CcEEEEEEE--CCEEEEEe------------------CCeEEEEECCCCeEEEEEcCCCceE
Confidence            33  2 11111001111 346788887  55555543                  278999999888885554 445556


Q ss_pred             ceEEE--cCCCCEEEEEe
Q 026389          221 NGVAL--SKDEDYLVVCE  236 (239)
Q Consensus       221 nGia~--s~dg~~lyvad  236 (239)
                      ++|+|  ++|++.|.++.
T Consensus       269 ~~va~~~s~d~~~La~a~  286 (588)
T 2j04_A          269 HIIPLNHEKESTILLMSN  286 (588)
T ss_dssp             CEEEETTCSSCEEEEECS
T ss_pred             EEEEeeeCCCCCEEEEEc
Confidence            88999  99998777765

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=97.67  E-value=0.00046  Score=64.39  Aligned_cols=157  Identities=8%  Similarity=0.012  Sum_probs=83.2

Q ss_pred             CcceEEEcCCCCE-EEEeC---------CCeEEEEecC-CcEEEeeeccC---cCccCeEEcCCCCEEEEeCCCCeEEEc
Q 026389           78 GPEDVCVDRNGVL-YTATR---------DGWIKRLHKN-GTWENWKLIGG---DTLLGITTTQENEILVCDADKGLLKVT  143 (239)
Q Consensus        78 gPe~ia~d~~G~l-y~~~~---------~g~I~~~~~~-G~~~~~~~~~~---~p~~Gl~~d~~G~L~v~d~~~g~~~v~  143 (239)
                      ...+++|+|||+. .++..         ++.|+.++.+ |+.+.+....+   ... .+++.+||+.++.-....++..+
T Consensus        62 ~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~-~~~~SPdG~~la~~~~~~i~~~~  140 (723)
T 1xfd_A           62 RAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQ-YAGWGPKGQQLIFIFENNIYYCA  140 (723)
T ss_dssp             TCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCS-BCCBCSSTTCEEEEETTEEEEES
T ss_pred             ccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCceEeccCCcccccccc-ccEECCCCCEEEEEECCeEEEEE
Confidence            3678999999974 44443         2778888864 44433332222   255 78899999643333334555566


Q ss_pred             -cCC-ceEEecc-cCCc-------------cccccccEEEcCCCC-EEEEeCCC-C---cCcc-----ccc-cccee---
Q 026389          144 -EEG-VTVLASH-VNGS-------------RINLADDLIAATDGS-IYFSVAST-K---FGLH-----NWG-LDLLE---  193 (239)
Q Consensus       144 -~~g-~~~l~~~-~~g~-------------~~~~pn~l~vd~dG~-iy~td~~~-~---~~~~-----~~~-~~~~e---  193 (239)
                       ..| ...+... ..+.             -+....+++++|||+ |+++.... .   |.+.     .+. ...+.   
T Consensus       141 ~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (723)
T 1xfd_A          141 HVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPK  220 (723)
T ss_dssp             SSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCB
T ss_pred             CCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCC
Confidence             445 4433321 1110             011336799999995 55543210 0   0000     000 00000   


Q ss_pred             ---ecCCceEEEEeCCCCeE-EEecCC------CCCcceEEEcCCCCEEEEE
Q 026389          194 ---AKPHGKLLKYDPSLNET-SILLDS------LFFANGVALSKDEDYLVVC  235 (239)
Q Consensus       194 ---~~~~g~v~~~d~~~~~~-~~~~~~------l~~pnGia~s~dg~~lyva  235 (239)
                         ..+...|+.+|.++++. ..+...      -.....++|+|||++|++.
T Consensus       221 ~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~  272 (723)
T 1xfd_A          221 AGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTW  272 (723)
T ss_dssp             TTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEE
T ss_pred             CCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEE
Confidence               01234899999988774 333321      1234569999999977443

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=97.66  E-value=0.0022  Score=63.65  Aligned_cols=137  Identities=13%  Similarity=0.147  Sum_probs=91.8

Q ss_pred             CCcceEEEcCCCCEE-EEeCCCeEEEEec-CCcE-EEeeeccCcCccCeEEcCCCCEEEEeCCCCeEEEc--cCC--ceE
Q 026389           77 NGPEDVCVDRNGVLY-TATRDGWIKRLHK-NGTW-ENWKLIGGDTLLGITTTQENEILVCDADKGLLKVT--EEG--VTV  149 (239)
Q Consensus        77 ~gPe~ia~d~~G~ly-~~~~~g~I~~~~~-~G~~-~~~~~~~~~p~~Gl~~d~~G~L~v~d~~~g~~~v~--~~g--~~~  149 (239)
                      ..-.+++|+++|.++ +++.+|.|..|+. +++. ..+....+... .++++++|+++++-...+.+++.  .+|  ...
T Consensus       616 ~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~-~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~  694 (1249)
T 3sfz_A          616 DAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVL-CCAFSSDDSYIATCSADKKVKIWDSATGKLVHT  694 (1249)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEE-EEEECTTSSEEEEEETTSEEEEEETTTCCEEEE
T ss_pred             ccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEE-EEEEecCCCEEEEEeCCCeEEEEECCCCceEEE
Confidence            345678999998765 5679999999996 4443 33333344556 89999999877776667777775  455  333


Q ss_pred             EecccCCccccccccEEEcCC--CCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEec-CCCCCcceEEEc
Q 026389          150 LASHVNGSRINLADDLIAATD--GSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILL-DSLFFANGVALS  226 (239)
Q Consensus       150 l~~~~~g~~~~~pn~l~vd~d--G~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~-~~l~~pnGia~s  226 (239)
                      +...     -.....+++.++  +.+.++.+.                 .|.|..||..+++..... ..-...+.++|+
T Consensus       695 ~~~~-----~~~v~~~~~~~~~~~~~l~sg~~-----------------d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~s  752 (1249)
T 3sfz_A          695 YDEH-----SEQVNCCHFTNKSNHLLLATGSN-----------------DFFLKLWDLNQKECRNTMFGHTNSVNHCRFS  752 (1249)
T ss_dssp             EECC-----SSCEEEEEECSSSSCCEEEEEET-----------------TSCEEEEETTSSSEEEEECCCSSCEEEEEEC
T ss_pred             EcCC-----CCcEEEEEEecCCCceEEEEEeC-----------------CCeEEEEECCCcchhheecCCCCCEEEEEEe
Confidence            3221     123567888885  345555433                 578999998877754443 334456889999


Q ss_pred             CCCCEEEEEe
Q 026389          227 KDEDYLVVCE  236 (239)
Q Consensus       227 ~dg~~lyvad  236 (239)
                      ||+++|+++.
T Consensus       753 p~~~~l~s~s  762 (1249)
T 3sfz_A          753 PDDELLASCS  762 (1249)
T ss_dssp             SSTTEEEEEE
T ss_pred             cCCCEEEEEE
Confidence            9999877654

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=97.66  E-value=0.00088  Score=58.91  Aligned_cols=136  Identities=10%  Similarity=-0.037  Sum_probs=88.2

Q ss_pred             CCcceEEEcCCCC--EEEEeCCCeEEEEecCC-----c----EEEeeeccCcCccCeEEcC-CCCEEEEeCCCCeEEEc-
Q 026389           77 NGPEDVCVDRNGV--LYTATRDGWIKRLHKNG-----T----WENWKLIGGDTLLGITTTQ-ENEILVCDADKGLLKVT-  143 (239)
Q Consensus        77 ~gPe~ia~d~~G~--ly~~~~~g~I~~~~~~G-----~----~~~~~~~~~~p~~Gl~~d~-~G~L~v~d~~~g~~~v~-  143 (239)
                      ....+++|++++.  |++++.+|.|..|+...     .    ...+........ .+++.+ ++.++++....+.+++. 
T Consensus       182 ~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~-~v~~~p~~~~~l~s~~~dg~i~i~d  260 (430)
T 2xyi_A          182 KEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVE-DVAWHLLHESLFGSVADDQKLMIWD  260 (430)
T ss_dssp             SCCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEE-EEEECSSCTTEEEEEETTSEEEEEE
T ss_pred             CCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEe-eeEEeCCCCCEEEEEeCCCeEEEEE
Confidence            3467899999765  55777999999998643     1    122223334466 889988 56788777667777764 


Q ss_pred             -cCC-----ceEEecccCCccccccccEEEcCCCC-EEEEeCCCCcCcccccccceeecCCceEEEEeCCC-Ce-EEEec
Q 026389          144 -EEG-----VTVLASHVNGSRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSL-NE-TSILL  214 (239)
Q Consensus       144 -~~g-----~~~l~~~~~g~~~~~pn~l~vd~dG~-iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~-~~-~~~~~  214 (239)
                       ..+     ...+..  ..   ..++.+++.++|. ++++...                 .|.|..||..+ ++ +..+.
T Consensus       261 ~~~~~~~~~~~~~~~--~~---~~v~~i~~~p~~~~~l~tg~~-----------------dg~v~vwd~~~~~~~~~~~~  318 (430)
T 2xyi_A          261 TRNNNTSKPSHTVDA--HT---AEVNCLSFNPYSEFILATGSA-----------------DKTVALWDLRNLKLKLHSFE  318 (430)
T ss_dssp             TTCSCSSSCSEEEEC--CS---SCEEEEEECSSCTTEEEEEET-----------------TSEEEEEETTCTTSCSEEEE
T ss_pred             CCCCCCCcceeEeec--CC---CCeEEEEeCCCCCCEEEEEeC-----------------CCeEEEEeCCCCCCCeEEee
Confidence             222     222211  11   3478999999984 7776544                 57899999875 22 33443


Q ss_pred             CCCCCcceEEEcCCCCEEEEE
Q 026389          215 DSLFFANGVALSKDEDYLVVC  235 (239)
Q Consensus       215 ~~l~~pnGia~s~dg~~lyva  235 (239)
                      ..-.....|+|+|+++.++++
T Consensus       319 ~h~~~v~~i~~sp~~~~~l~s  339 (430)
T 2xyi_A          319 SHKDEIFQVQWSPHNETILAS  339 (430)
T ss_dssp             CCSSCEEEEEECSSCTTEEEE
T ss_pred             cCCCCEEEEEECCCCCCEEEE
Confidence            344567889999999765554

>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*

Probab=97.65  E-value=0.002  Score=56.66  Aligned_cols=137  Identities=15%  Similarity=0.232  Sum_probs=85.8

Q ss_pred             cceEEEc-C-------CCCEEEEe-CCCeEEEEec-CCc-EEEee-----e------c-------cCcCccCeEEcCC--
Q 026389           79 PEDVCVD-R-------NGVLYTAT-RDGWIKRLHK-NGT-WENWK-----L------I-------GGDTLLGITTTQE--  127 (239)
Q Consensus        79 Pe~ia~d-~-------~G~ly~~~-~~g~I~~~~~-~G~-~~~~~-----~------~-------~~~p~~Gl~~d~~--  127 (239)
                      -.+|++| .       ++.+|+++ ..+.|+.+|- +|+ ++...     +      .       ..... ||+++++  
T Consensus       154 l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~pd~~~~~~i~G~~~~~~~Gi~-gIaLsp~~~  232 (381)
T 3q6k_A          154 FGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKAERPTKFDYGGKEYEFKAGIF-GITLGDRDS  232 (381)
T ss_dssp             EEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSCCSCEEEEETTEEEEECCCEE-EEEECCCCT
T ss_pred             cceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCccccCcceEECCEEeEeccCce-EEEecCCcC
Confidence            4468888 2       45789887 5667777774 333 22110     0      0       12345 8888876  


Q ss_pred             --C-CEEEEeC-CCCeEEEc----cCC-----ceEEecccCCccccccccEEEc-CCCCEEEEeCCCCcCccccccccee
Q 026389          128 --N-EILVCDA-DKGLLKVT----EEG-----VTVLASHVNGSRINLADDLIAA-TDGSIYFSVASTKFGLHNWGLDLLE  193 (239)
Q Consensus       128 --G-~L~v~d~-~~g~~~v~----~~g-----~~~l~~~~~g~~~~~pn~l~vd-~dG~iy~td~~~~~~~~~~~~~~~e  193 (239)
                        + .||.+-- +..++++.    .+.     ++.+.+.  | +....-++++| .+|+|||++..              
T Consensus       233 ~~~~~LYf~plss~~ly~V~T~~L~~~~~~~~v~~~G~k--g-~~s~~~~~~~D~~~G~ly~~~~~--------------  295 (381)
T 3q6k_A          233 EGNRPAYYLAGSAIKVYSVNTKELKQKGGKLNPELLGNR--G-KYNDAIALAYDPKTKVIFFAEAN--------------  295 (381)
T ss_dssp             TSCCEEEEEESSCSEEEEEEHHHHSSTTCCCCCEEEEEC--C-TTCCEEEEEECTTTCEEEEEESS--------------
T ss_pred             CCCeEEEEEECCCCcEEEEEHHHhhCcchhhceEEeeec--C-CCCCcceEEEeCCCCeEEEEecc--------------
Confidence              4 5888764 44677774    122     3333322  1 11122357887 78999999976              


Q ss_pred             ecCCceEEEEeCCC-----CeEEEec--CCCCCcceEEEcCCCCEEEEEeC
Q 026389          194 AKPHGKLLKYDPSL-----NETSILL--DSLFFANGVALSKDEDYLVVCET  237 (239)
Q Consensus       194 ~~~~g~v~~~d~~~-----~~~~~~~--~~l~~pnGia~s~dg~~lyvadt  237 (239)
                         ...|.++++++     +...++.  ..+.+|+++.++.||. |||...
T Consensus       296 ---~~aI~~w~~~~~~~~~~n~~~l~~d~~l~~pd~~~i~~~g~-Lwv~sn  342 (381)
T 3q6k_A          296 ---TKQVSCWNTQKMPLRMKNTDVVYTSSRFVFGTDISVDSKGG-LWFMSN  342 (381)
T ss_dssp             ---SSEEEEEETTSCSBCGGGEEEEEECTTCCSEEEEEECTTSC-EEEEEC
T ss_pred             ---CCeEEEEeCCCCccccCceEEEEECCCccccCeEEECCCCe-EEEEEC
Confidence               57899999985     2345554  3588999999999886 777543

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=97.65  E-value=0.0032  Score=53.02  Aligned_cols=140  Identities=19%  Similarity=0.163  Sum_probs=85.5

Q ss_pred             CCcceEEEcCCCCEE-EEeCCCeEEEEecCC-cEE---EeeeccCcCccCeEEcCC--CCEEEEeCCCCeEEEc--cCC-
Q 026389           77 NGPEDVCVDRNGVLY-TATRDGWIKRLHKNG-TWE---NWKLIGGDTLLGITTTQE--NEILVCDADKGLLKVT--EEG-  146 (239)
Q Consensus        77 ~gPe~ia~d~~G~ly-~~~~~g~I~~~~~~G-~~~---~~~~~~~~p~~Gl~~d~~--G~L~v~d~~~g~~~v~--~~g-  146 (239)
                      ..-.+++|+++|..+ +++.+|.|..|+.++ +.+   .+........ .+++.++  ++++++-...|.+++.  .++ 
T Consensus        12 ~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~-~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~   90 (379)
T 3jrp_A           12 ELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVW-RVDWAHPKFGTILASCSYDGKVLIWKEENGR   90 (379)
T ss_dssp             CCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEE-EEEECCGGGCSEEEEEETTSCEEEEEEETTE
T ss_pred             ccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEE-EEEeCCCCCCCEEEEeccCCEEEEEEcCCCc
Confidence            345678999988755 666899999988642 222   2222233445 7888755  7766665556666664  344 


Q ss_pred             ceEEecccCCccccccccEEEcCC--CCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCe---EEEecCCCCCcc
Q 026389          147 VTVLASHVNGSRINLADDLIAATD--GSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNE---TSILLDSLFFAN  221 (239)
Q Consensus       147 ~~~l~~~~~g~~~~~pn~l~vd~d--G~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~---~~~~~~~l~~pn  221 (239)
                      ...+... .+. -.....+++.++  |.++++-..                 .|.|..||..+++   ...+...-...+
T Consensus        91 ~~~~~~~-~~~-~~~v~~~~~~~~~~~~~l~~~~~-----------------d~~i~v~d~~~~~~~~~~~~~~~~~~v~  151 (379)
T 3jrp_A           91 WSQIAVH-AVH-SASVNSVQWAPHEYGPLLLVASS-----------------DGKVSVVEFKENGTTSPIIIDAHAIGVN  151 (379)
T ss_dssp             EEEEEEE-CCC-SSCEEEEEECCGGGCSEEEEEET-----------------TSEEEEEECCTTSCCCEEEEECCTTCEE
T ss_pred             eeEeeee-cCC-CcceEEEEeCCCCCCCEEEEecC-----------------CCcEEEEecCCCCceeeEEecCCCCceE
Confidence            2222221 111 134678999998  876666543                 4788888887652   223333344567


Q ss_pred             eEEEcC-------------CCCEEEEEe
Q 026389          222 GVALSK-------------DEDYLVVCE  236 (239)
Q Consensus       222 Gia~s~-------------dg~~lyvad  236 (239)
                      .++++|             |++.++++.
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~  179 (379)
T 3jrp_A          152 SASWAPATIEEDGEHNGTKESRKFVTGG  179 (379)
T ss_dssp             EEEECCCC----------CTTCEEEEEE
T ss_pred             EEEEcCccccccccccCCCCCCEEEEEe
Confidence            888988             677776653

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=97.63  E-value=0.0052  Score=50.58  Aligned_cols=98  Identities=18%  Similarity=0.166  Sum_probs=57.5

Q ss_pred             cCCcceEEEcCCCCEE-EEeCCCeEEEEecCC-c----E-EEeeeccCcCccCeEEcC--CCCEEEEeCCCCeEEEc--c
Q 026389           76 LNGPEDVCVDRNGVLY-TATRDGWIKRLHKNG-T----W-ENWKLIGGDTLLGITTTQ--ENEILVCDADKGLLKVT--E  144 (239)
Q Consensus        76 ~~gPe~ia~d~~G~ly-~~~~~g~I~~~~~~G-~----~-~~~~~~~~~p~~Gl~~d~--~G~L~v~d~~~g~~~v~--~  144 (239)
                      -..-.+++|+++|.++ +++.+|.|..|+.+. +    . ..+........ .+++.+  +++++++-...|.+++.  .
T Consensus        11 ~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~d~~~l~s~~~dg~v~vwd~~   89 (351)
T 3f3f_A           11 DDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIV-AIDWASPEYGRIIASASYDKTVKLWEED   89 (351)
T ss_dssp             SSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEE-EEEECCGGGCSEEEEEETTSCEEEEEEC
T ss_pred             ccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEE-EEEEcCCCCCCEEEEEcCCCeEEEEecC
Confidence            3456789999988754 667899999998642 1    1 22222334455 889987  58777766556766664  3


Q ss_pred             CC-c-------eEEecccCCccccccccEEEcCC--CCEEEE
Q 026389          145 EG-V-------TVLASHVNGSRINLADDLIAATD--GSIYFS  176 (239)
Q Consensus       145 ~g-~-------~~l~~~~~g~~~~~pn~l~vd~d--G~iy~t  176 (239)
                      .+ .       +.+.. ..+. -.....+++.++  |.++++
T Consensus        90 ~~~~~~~~~~~~~~~~-~~~~-~~~v~~~~~~~~~~~~~l~~  129 (351)
T 3f3f_A           90 PDQEECSGRRWNKLCT-LNDS-KGSLYSVKFAPAHLGLKLAC  129 (351)
T ss_dssp             TTSCTTSSCSEEEEEE-ECCC-SSCEEEEEECCGGGCSEEEE
T ss_pred             CCcccccccCcceeee-eccc-CCceeEEEEcCCCCCcEEEE
Confidence            32 1       22221 1111 123567778877  764444

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=97.63  E-value=0.0037  Score=52.82  Aligned_cols=136  Identities=10%  Similarity=0.018  Sum_probs=80.7

Q ss_pred             CcceEEEcCCCCEE-EEeCCCeEEEEecCC--------cE-EEeeeccCcCccCeEEcCCCCEEEEeCCCCeEEEc-c-C
Q 026389           78 GPEDVCVDRNGVLY-TATRDGWIKRLHKNG--------TW-ENWKLIGGDTLLGITTTQENEILVCDADKGLLKVT-E-E  145 (239)
Q Consensus        78 gPe~ia~d~~G~ly-~~~~~g~I~~~~~~G--------~~-~~~~~~~~~p~~Gl~~d~~G~L~v~d~~~g~~~v~-~-~  145 (239)
                      .-.+++|.++|.++ +++.|+.|..|+.+.        +. ..+........ .+++.++|+++++-...+.+++. . .
T Consensus        60 ~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~-~v~~sp~g~~las~s~D~~v~iwd~~~  138 (330)
T 2hes_X           60 AIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVK-GVAWSNDGYYLATCSRDKSVWIWETDE  138 (330)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEE-EEEECTTSCEEEEEETTSCEEEEECCT
T ss_pred             CEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEE-EEEECCCCCEEEEEeCCCEEEEEeccC
Confidence            45679999988755 667899999988632        11 12222233455 89999999877776666777664 2 2


Q ss_pred             -C--ceEEecccCCccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCe---EEEecCCCCC
Q 026389          146 -G--VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNE---TSILLDSLFF  219 (239)
Q Consensus       146 -g--~~~l~~~~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~---~~~~~~~l~~  219 (239)
                       +  .+.+. ...+.. ...+.+++.|+|.++++-+.                 .|.|..||..++.   +..+...-..
T Consensus       139 ~~~~~~~~~-~~~~h~-~~v~~v~~~p~~~~l~s~s~-----------------D~~i~iW~~~~~~~~~~~~~~~h~~~  199 (330)
T 2hes_X          139 SGEEYECIS-VLQEHS-QDVKHVIWHPSEALLASSSY-----------------DDTVRIWKDYDDDWECVAVLNGHEGT  199 (330)
T ss_dssp             TCCCCEEEE-EECCCS-SCEEEEEECSSSSEEEEEET-----------------TSCEEEEEEETTEEEEEEEECCCSSC
T ss_pred             CCCCeEEEE-EeccCC-CceEEEEECCCCCEEEEEcC-----------------CCeEEEEECCCCCeeEEEEccCCCCc
Confidence             2  22221 112211 24678999999988777654                 4667777655442   2223223334


Q ss_pred             cceEEEcCC--CCEEE
Q 026389          220 ANGVALSKD--EDYLV  233 (239)
Q Consensus       220 pnGia~s~d--g~~ly  233 (239)
                      ...++|+|+  +..|.
T Consensus       200 v~~~~~~~~~~~~~l~  215 (330)
T 2hes_X          200 VWSSDFDKTEGVFRLC  215 (330)
T ss_dssp             EEEEEECCSSSSCEEE
T ss_pred             EEEEEecCCCCeeEEE
Confidence            577888887  44444

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=97.62  E-value=0.0042  Score=56.10  Aligned_cols=136  Identities=13%  Similarity=0.089  Sum_probs=85.2

Q ss_pred             CcceEEEcCCCCEEEEeCCCeEEEEec-CCcEEEeeeccCcCccCeEEcCCCCEEEEeCC-CCeEEEc-c-CC-ceEEec
Q 026389           78 GPEDVCVDRNGVLYTATRDGWIKRLHK-NGTWENWKLIGGDTLLGITTTQENEILVCDAD-KGLLKVT-E-EG-VTVLAS  152 (239)
Q Consensus        78 gPe~ia~d~~G~ly~~~~~g~I~~~~~-~G~~~~~~~~~~~p~~Gl~~d~~G~L~v~d~~-~g~~~v~-~-~g-~~~l~~  152 (239)
                      .|..+++.++|.+.+...++.+..++. +++..........+. .+++.  |+++++... .+.+++. . ++ ...  .
T Consensus       408 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~l~~~~~~d~~i~~~~~~~~~~~~--~  482 (615)
T 1pgu_A          408 QPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGS-AVSLS--QNYVAVGLEEGNTIQVFKLSDLEVSF--D  482 (615)
T ss_dssp             CEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEE-EEEEC--SSEEEEEETTTSCEEEEETTEEEEEE--E
T ss_pred             CceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCce-EEEEc--CCEEEEeecCCCeEEEEECCCccccc--c
Confidence            466677777776665556666766664 454332233445566 88887  554444443 5666554 2 33 211  1


Q ss_pred             ccCCccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecC--CCCCcceEEEcC---
Q 026389          153 HVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLD--SLFFANGVALSK---  227 (239)
Q Consensus       153 ~~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~--~l~~pnGia~s~---  227 (239)
                      ...+. -.....++++++|+++++-..                 .|.|..||..+++......  .-...+.++|+|   
T Consensus       483 ~~~~~-~~~v~~~~~s~~g~~l~~~~~-----------------dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~sp~~~  544 (615)
T 1pgu_A          483 LKTPL-RAKPSYISISPSETYIAAGDV-----------------MGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEK  544 (615)
T ss_dssp             CSSCC-SSCEEEEEECTTSSEEEEEET-----------------TSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC-
T ss_pred             ccCCc-cCceEEEEECCCCCEEEEcCC-----------------CCeEEEeeCCCCcceeEeecCCCCceeEEEEcCccc
Confidence            12221 235788999999987776543                 5889999998887655443  345578999999   


Q ss_pred             -------CCCEEEEEe
Q 026389          228 -------DEDYLVVCE  236 (239)
Q Consensus       228 -------dg~~lyvad  236 (239)
                             |+++|.++.
T Consensus       545 ~~~~~~~~~~~l~~~~  560 (615)
T 1pgu_A          545 GANEEEIEEDLVATGS  560 (615)
T ss_dssp             -----CCSCCEEEEEE
T ss_pred             cccccccCCCEEEEEc
Confidence                   999887764

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=97.61  E-value=0.004  Score=52.62  Aligned_cols=136  Identities=13%  Similarity=0.105  Sum_probs=82.7

Q ss_pred             cceEEEcCCCCEEEEeCCCeEEEEecCC-c--EE-Eeee--ccCcCccCeEEcCCCCEEEEeCCCCeEEEc-cC-C----
Q 026389           79 PEDVCVDRNGVLYTATRDGWIKRLHKNG-T--WE-NWKL--IGGDTLLGITTTQENEILVCDADKGLLKVT-EE-G----  146 (239)
Q Consensus        79 Pe~ia~d~~G~ly~~~~~g~I~~~~~~G-~--~~-~~~~--~~~~p~~Gl~~d~~G~L~v~d~~~g~~~v~-~~-g----  146 (239)
                      -.+++++++ .|.+++.|+.|..|+... .  .. .+..  ...... .+++.++|+++++-...+.+++. .. +    
T Consensus        17 v~~~~~s~~-~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~-~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~   94 (330)
T 2hes_X           17 IWSFDFSQG-ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIR-SVAWRPHTSLLAAGSFDSTVSIWAKEESADRT   94 (330)
T ss_dssp             EEEEEEETT-EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEE-EEEECTTSSEEEEEETTSCEEEEEC-------
T ss_pred             eeeeccCCC-EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEE-EEEECCCCCEEEEEeCCCcEEEEEcccCcCcc
Confidence            345777766 666778999999998643 2  21 2211  122345 78999999887776667777765 21 1    


Q ss_pred             --ceEEecccCCccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCC-CC---eE-EEecCCCCC
Q 026389          147 --VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPS-LN---ET-SILLDSLFF  219 (239)
Q Consensus       147 --~~~l~~~~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~-~~---~~-~~~~~~l~~  219 (239)
                        .+.+ ....+.. .....+++.|+|+.+++-+.                 .+.|..||.. ++   +. ..+...-..
T Consensus        95 ~~~~~~-~~~~~h~-~~V~~v~~sp~g~~las~s~-----------------D~~v~iwd~~~~~~~~~~~~~~~~h~~~  155 (330)
T 2hes_X           95 FEMDLL-AIIEGHE-NEVKGVAWSNDGYYLATCSR-----------------DKSVWIWETDESGEEYECISVLQEHSQD  155 (330)
T ss_dssp             CCCEEE-EEEC-----CEEEEEECTTSCEEEEEET-----------------TSCEEEEECCTTCCCCEEEEEECCCSSC
T ss_pred             ccceeE-EEEcCCC-CcEEEEEECCCCCEEEEEeC-----------------CCEEEEEeccCCCCCeEEEEEeccCCCc
Confidence              1111 1112211 24678999999987777554                 4778888873 22   22 233333345


Q ss_pred             cceEEEcCCCCEEEEE
Q 026389          220 ANGVALSKDEDYLVVC  235 (239)
Q Consensus       220 pnGia~s~dg~~lyva  235 (239)
                      .+.++|+|++++|+.+
T Consensus       156 v~~v~~~p~~~~l~s~  171 (330)
T 2hes_X          156 VKHVIWHPSEALLASS  171 (330)
T ss_dssp             EEEEEECSSSSEEEEE
T ss_pred             eEEEEECCCCCEEEEE
Confidence            6889999999977654

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=97.60  E-value=0.0012  Score=62.53  Aligned_cols=129  Identities=5%  Similarity=-0.046  Sum_probs=76.8

Q ss_pred             eEEEcCCCCEEEEeCCCeEEEEec-CCcEEEeeecc-CcC-----ccCeEEcCCCCEEEEeCC-C--------CeE-EEc
Q 026389           81 DVCVDRNGVLYTATRDGWIKRLHK-NGTWENWKLIG-GDT-----LLGITTTQENEILVCDAD-K--------GLL-KVT  143 (239)
Q Consensus        81 ~ia~d~~G~ly~~~~~g~I~~~~~-~G~~~~~~~~~-~~p-----~~Gl~~d~~G~L~v~d~~-~--------g~~-~v~  143 (239)
                      +++|.+||.++..+ ++.|+.++. +|+.+.+.... ...     . ++++.+||+.++.... .        +.+ ..+
T Consensus        21 ~~~w~~dg~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d   98 (740)
T 4a5s_A           21 SLRWISDHEYLYKQ-ENNILVFNAEYGNSSVFLENSTFDEFGHSIN-DYSISPDGQFILLEYNYVKQWRHSYTASYDIYD   98 (740)
T ss_dssp             CEEECSSSEEEEEE-TTEEEEEETTTCCEEEEECTTTTTTCCSCCC-EEEECTTSSEEEEEEEEEECSSSCEEEEEEEEE
T ss_pred             ccEECCCCcEEEEc-CCcEEEEECCCCceEEEEechhhhhhccccc-ceEECCCCCEEEEEECCeeeEEEccceEEEEEE
Confidence            57999999777655 899999996 45544332211 111     2 3678999974333221 1        223 344


Q ss_pred             -cCC-ceEEecccCCccccccccEEEcCCC-CEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecCC----
Q 026389          144 -EEG-VTVLASHVNGSRINLADDLIAATDG-SIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDS----  216 (239)
Q Consensus       144 -~~g-~~~l~~~~~g~~~~~pn~l~vd~dG-~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~~----  216 (239)
                       ..| .+.+... .    ......+++||| .|.|+.                   .+.||.+|.++++.+.+...    
T Consensus        99 ~~~~~~~~l~~~-~----~~~~~~~~SPdG~~la~~~-------------------~~~i~~~~~~~~~~~~lt~~g~~~  154 (740)
T 4a5s_A           99 LNKRQLITEERI-P----NNTQWVTWSPVGHKLAYVW-------------------NNDIYVKIEPNLPSYRITWTGKED  154 (740)
T ss_dssp             TTTTEECCSSCC-C----TTEEEEEECSSTTCEEEEE-------------------TTEEEEESSTTSCCEECCSCCBTT
T ss_pred             CCCCcEEEcccC-C----CcceeeEECCCCCEEEEEE-------------------CCeEEEEECCCCceEEEcCCCCcc
Confidence             345 3333221 1    134678999999 576663                   24688888877766554321    


Q ss_pred             ---------------CCCcceEEEcCCCCEEEEE
Q 026389          217 ---------------LFFANGVALSKDEDYLVVC  235 (239)
Q Consensus       217 ---------------l~~pnGia~s~dg~~lyva  235 (239)
                                     +..-.++++||||++|.+.
T Consensus       155 ~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~  188 (740)
T 4a5s_A          155 IIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYA  188 (740)
T ss_dssp             TEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEE
T ss_pred             ceecCcccccccchhcCCCcceEECCCCCEEEEE
Confidence                           1222468999999988654

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=97.60  E-value=0.0015  Score=55.67  Aligned_cols=122  Identities=11%  Similarity=0.133  Sum_probs=77.5

Q ss_pred             EcC-CCCEEEEe-CCCeEEEEecCCcEEEeeeccCcCccCeEEcCCC-CEEEEeCCC--CeEEEccCC--ceEEecccCC
Q 026389           84 VDR-NGVLYTAT-RDGWIKRLHKNGTWENWKLIGGDTLLGITTTQEN-EILVCDADK--GLLKVTEEG--VTVLASHVNG  156 (239)
Q Consensus        84 ~d~-~G~ly~~~-~~g~I~~~~~~G~~~~~~~~~~~p~~Gl~~d~~G-~L~v~d~~~--g~~~v~~~g--~~~l~~~~~g  156 (239)
                      +++ .+.||.++ ...+|++++.+|..+.....  .+. ...+.|+| .||.++...  .+.+.+.+|  .++|.+.   
T Consensus       152 ~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~--~~~-~~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~~~~Lt~~---  225 (302)
T 3s25_A          152 CNTSDRYFYYNNPKNGQLYRYDTASQSEALFYD--CNC-YKPVVLDDTNVYYMDVNRDNAIVHVNINNPNPVVLTEA---  225 (302)
T ss_dssp             SEEETTEEEEECTTTCCEEEEETTTTEEEEEEC--SCE-EEEEEEETTEEEEEEGGGTTEEEEECSSSCCCEECSCS---
T ss_pred             eeEECCEEEEEeCCCceEEEEECCCCCEEEEeC--CCc-cceeeecCCEEEEEEcCCCcEEEEEECCCCCeEEEeCC---
Confidence            344 45788777 47899999988754322222  233 34455554 789998653  466777666  5555431   


Q ss_pred             ccccccccEEEcCCC-CEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecCCCCCcceEEEcCCCCEEEEE
Q 026389          157 SRINLADDLIAATDG-SIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVC  235 (239)
Q Consensus       157 ~~~~~pn~l~vd~dG-~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~~l~~pnGia~s~dg~~lyva  235 (239)
                       .+     ..++++| .|||++...                .+.|++.+.++...+.+..+    +..+++..+++||++
T Consensus       226 -~~-----~~~~~~g~~Iy~~~~~~----------------~~~i~~~~~DG~~r~~l~~~----~~~~i~i~~d~Iy~t  279 (302)
T 3s25_A          226 -NI-----EHYNVYGSLIFYQRGGD----------------NPALCVVKNDGTGFKELAKG----EFCNINVTSQYVYFT  279 (302)
T ss_dssp             -CE-----EEEEEETTEEEEEECSS----------------SCEEEEEETTSCCCEEEEES----CEEEEEECSSEEEEE
T ss_pred             -Cc-----ceEEECCCEEEEEECCC----------------CcEEEEEECCCCccEEeeCC----ccceEEEeCCEEEEE
Confidence             11     2367776 799975331                36899999997666666543    233566688999999


Q ss_pred             eC
Q 026389          236 ET  237 (239)
Q Consensus       236 dt  237 (239)
                      |.
T Consensus       280 d~  281 (302)
T 3s25_A          280 DF  281 (302)
T ss_dssp             ET
T ss_pred             EC
Confidence            84

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=97.59  E-value=0.0013  Score=56.46  Aligned_cols=100  Identities=19%  Similarity=0.267  Sum_probs=68.1

Q ss_pred             CCCEEEEeCCCeEEEEec-CCcEEEeeeccCcCccCeEEcCCCCEEEEeCCCCeEEEc-cCC-ceEEecccCCccccccc
Q 026389           87 NGVLYTATRDGWIKRLHK-NGTWENWKLIGGDTLLGITTTQENEILVCDADKGLLKVT-EEG-VTVLASHVNGSRINLAD  163 (239)
Q Consensus        87 ~G~ly~~~~~g~I~~~~~-~G~~~~~~~~~~~p~~Gl~~d~~G~L~v~d~~~g~~~v~-~~g-~~~l~~~~~g~~~~~pn  163 (239)
                      +|.+|++..++.|+.++. +|+.. |........ ++.++ +++||+++...+++.++ .+| ...-.....+.   ...
T Consensus       239 ~~~v~~~~~~g~l~~~d~~tG~~~-w~~~~~~~~-~~~~~-~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~---~~~  312 (376)
T 3q7m_A          239 NGVVFALAYNGNLTALDLRSGQIM-WKRELGSVN-DFIVD-GNRIYLVDQNDRVMALTIDGGVTLWTQSDLLHR---LLT  312 (376)
T ss_dssp             TTEEEEECTTSCEEEEETTTCCEE-EEECCCCEE-EEEEE-TTEEEEEETTCCEEEEETTTCCEEEEECTTTTS---CCC
T ss_pred             CCEEEEEecCcEEEEEECCCCcEE-eeccCCCCC-CceEE-CCEEEEEcCCCeEEEEECCCCcEEEeecccCCC---ccc
Confidence            688999999999999997 56643 444444445 66664 67999999888899999 577 43322212221   122


Q ss_pred             cEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEE
Q 026389          164 DLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETS  211 (239)
Q Consensus       164 ~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~  211 (239)
                      ...+. +|.||+++..                  |.|+.+|++++++.
T Consensus       313 ~~~~~-~~~l~v~~~~------------------g~l~~~d~~tG~~~  341 (376)
T 3q7m_A          313 SPVLY-NGNLVVGDSE------------------GYLHWINVEDGRFV  341 (376)
T ss_dssp             CCEEE-TTEEEEECTT------------------SEEEEEETTTCCEE
T ss_pred             CCEEE-CCEEEEEeCC------------------CeEEEEECCCCcEE
Confidence            33443 5799998753                  78999999888764

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=97.57  E-value=0.0062  Score=50.72  Aligned_cols=136  Identities=7%  Similarity=-0.031  Sum_probs=84.9

Q ss_pred             CcceEEEcCCCCEE-EEeCCCeEEEEecC-C-cE-EEeeeccCcCccCeEEcC-CCCEEEEeCCCCeEEEc--cCC--ce
Q 026389           78 GPEDVCVDRNGVLY-TATRDGWIKRLHKN-G-TW-ENWKLIGGDTLLGITTTQ-ENEILVCDADKGLLKVT--EEG--VT  148 (239)
Q Consensus        78 gPe~ia~d~~G~ly-~~~~~g~I~~~~~~-G-~~-~~~~~~~~~p~~Gl~~d~-~G~L~v~d~~~g~~~v~--~~g--~~  148 (239)
                      .-.++++.+++.++ +++.|+.|..|+.. + .. ..+........ .+++++ +++++++-...+.+++.  ..+  ..
T Consensus        99 ~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~-~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~  177 (304)
T 2ynn_A           99 YIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVM-CVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNF  177 (304)
T ss_dssp             CEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEE-EEEECTTCTTEEEEEETTSEEEEEETTCSSCSE
T ss_pred             cEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEE-EEEECCCCCCEEEEEeCCCeEEEEECCCCCccc
Confidence            35678999988654 67799999999853 3 22 22222333445 889987 56777776667777775  233  22


Q ss_pred             EEecccCCccccccccEEEcC--CCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEec-CCCCCcceEEE
Q 026389          149 VLASHVNGSRINLADDLIAAT--DGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILL-DSLFFANGVAL  225 (239)
Q Consensus       149 ~l~~~~~g~~~~~pn~l~vd~--dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~-~~l~~pnGia~  225 (239)
                      .+....    ....+.+.+.+  ++.+.++.+.                 .|.|..||..+++..... ......+.++|
T Consensus       178 ~~~~~~----~~~v~~~~~~~~~~~~~l~s~s~-----------------D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~  236 (304)
T 2ynn_A          178 TLTTGQ----ERGVNYVDYYPLPDKPYMITASD-----------------DLTIKIWDYQTKSCVATLEGHMSNVSFAVF  236 (304)
T ss_dssp             EEECCC----TTCEEEEEECCSTTCCEEEEEET-----------------TSEEEEEETTTTEEEEEEECCSSCEEEEEE
T ss_pred             eeccCC----cCcEEEEEEEEcCCCCEEEEEcC-----------------CCeEEEEeCCCCccceeeCCCCCCEEEEEE
Confidence            222111    11234556654  5666666544                 588999998877654433 33445678899


Q ss_pred             cCCCCEEEEE
Q 026389          226 SKDEDYLVVC  235 (239)
Q Consensus       226 s~dg~~lyva  235 (239)
                      +|+++.|+.+
T Consensus       237 ~p~~~~l~s~  246 (304)
T 2ynn_A          237 HPTLPIIISG  246 (304)
T ss_dssp             CSSSSEEEEE
T ss_pred             CCCCCEEEEE
Confidence            9999876654

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=97.53  E-value=0.0035  Score=59.00  Aligned_cols=138  Identities=7%  Similarity=-0.011  Sum_probs=91.1

Q ss_pred             CCcceEEEcCCCC-EEEEeCCCeEEEEecCC--cE-EEeeeccCcCccCeEEcC-CCCEEEEeCCCCeEEEc--cCC--c
Q 026389           77 NGPEDVCVDRNGV-LYTATRDGWIKRLHKNG--TW-ENWKLIGGDTLLGITTTQ-ENEILVCDADKGLLKVT--EEG--V  147 (239)
Q Consensus        77 ~gPe~ia~d~~G~-ly~~~~~g~I~~~~~~G--~~-~~~~~~~~~p~~Gl~~d~-~G~L~v~d~~~g~~~v~--~~g--~  147 (239)
                      ....+++|.++|. |++++.+|.|..|+.+.  .. ..+........ .+++.+ +|+++++....|.+++.  ..+  .
T Consensus        98 ~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~-~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~  176 (814)
T 3mkq_A           98 DYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVM-CVAFNPKDPSTFASGCLDRTVKVWSLGQSTPN  176 (814)
T ss_dssp             SCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEE-EEEEETTEEEEEEEEETTSEEEEEETTCSSCS
T ss_pred             CCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEE-EEEEEcCCCCEEEEEeCCCeEEEEECCCCcce
Confidence            3466799999886 55777999999998643  22 23333334456 889988 77766666556777665  334  3


Q ss_pred             eEEecccCCccccccccEEEcC--CCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecC-CCCCcceEE
Q 026389          148 TVLASHVNGSRINLADDLIAAT--DGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLD-SLFFANGVA  224 (239)
Q Consensus       148 ~~l~~~~~g~~~~~pn~l~vd~--dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~-~l~~pnGia  224 (239)
                      ..+....    ....+.+++.+  +|..+++...                 .|.|..||..+++...... .......++
T Consensus       177 ~~~~~~~----~~~v~~~~~~~~~~~~~l~~~~~-----------------dg~i~~~d~~~~~~~~~~~~~~~~v~~~~  235 (814)
T 3mkq_A          177 FTLTTGQ----ERGVNYVDYYPLPDKPYMITASD-----------------DLTIKIWDYQTKSCVATLEGHMSNVSFAV  235 (814)
T ss_dssp             EEEECCC----TTCCCEEEECCSTTCCEEEEECT-----------------TSEEEEEETTTTEEEEEEECCSSCEEEEE
T ss_pred             eEEecCC----CCCEEEEEEEECCCCCEEEEEeC-----------------CCEEEEEECCCCcEEEEEcCCCCCEEEEE
Confidence            3332211    12367788888  8877776554                 5889999988776544433 345567899


Q ss_pred             EcCCCCEEEEEe
Q 026389          225 LSKDEDYLVVCE  236 (239)
Q Consensus       225 ~s~dg~~lyvad  236 (239)
                      ++|+|++|+++.
T Consensus       236 ~~~~~~~l~~~~  247 (814)
T 3mkq_A          236 FHPTLPIIISGS  247 (814)
T ss_dssp             ECSSSSEEEEEE
T ss_pred             EcCCCCEEEEEe
Confidence            999999777654

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=97.52  E-value=0.0076  Score=51.89  Aligned_cols=133  Identities=13%  Similarity=0.112  Sum_probs=86.1

Q ss_pred             eEEEcCC--CCEEEEeCCCeEEEEec-CCcE-EEeee-----ccCcCccCeEEcC-CCCEEEEeCCCCeEEEc--c-CC-
Q 026389           81 DVCVDRN--GVLYTATRDGWIKRLHK-NGTW-ENWKL-----IGGDTLLGITTTQ-ENEILVCDADKGLLKVT--E-EG-  146 (239)
Q Consensus        81 ~ia~d~~--G~ly~~~~~g~I~~~~~-~G~~-~~~~~-----~~~~p~~Gl~~d~-~G~L~v~d~~~g~~~v~--~-~g-  146 (239)
                      .+++.++  ..|++++.|+.|..||. +|+. ..+..     ...... .+.+.+ +++++++-...+.+++.  . .+ 
T Consensus       162 ~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~-~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~  240 (380)
T 3iz6_a          162 SCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVL-SLSINSLNANMFISGSCDTTVRLWDLRITSR  240 (380)
T ss_dssp             CCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEE-EEEECSSSCCEEEEEETTSCEEEEETTTTCC
T ss_pred             EEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeE-EEEeecCCCCEEEEEECCCeEEEEECCCCCc
Confidence            4556553  35888889999999996 3443 22211     112234 566764 67888877777777775  2 22 


Q ss_pred             -ceEEecccCCccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecCC--------C
Q 026389          147 -VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDS--------L  217 (239)
Q Consensus       147 -~~~l~~~~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~~--------l  217 (239)
                       ...+... .    ...+.+++.|+|..++|-+.                 .|.|..||..+++.......        .
T Consensus       241 ~~~~~~~h-~----~~v~~v~~~p~~~~l~s~s~-----------------D~~i~lwd~~~~~~~~~~~~~~~~~~~~~  298 (380)
T 3iz6_a          241 AVRTYHGH-E----GDINSVKFFPDGQRFGTGSD-----------------DGTCRLFDMRTGHQLQVYNREPDRNDNEL  298 (380)
T ss_dssp             CCEEECCC-S----SCCCEEEECTTSSEEEEECS-----------------SSCEEEEETTTTEEEEEECCCCSSSCCSS
T ss_pred             ceEEECCc-C----CCeEEEEEecCCCeEEEEcC-----------------CCeEEEEECCCCcEEEEeccccccccccc
Confidence             3333221 1    24688999999998888765                 57899999887765443322        1


Q ss_pred             CCcceEEEcCCCCEEEEEe
Q 026389          218 FFANGVALSKDEDYLVVCE  236 (239)
Q Consensus       218 ~~pnGia~s~dg~~lyvad  236 (239)
                      .....++|+|+|++|+...
T Consensus       299 ~~v~~~~~s~~g~~l~~g~  317 (380)
T 3iz6_a          299 PIVTSVAFSISGRLLFAGY  317 (380)
T ss_dssp             CSCSEEEECSSSSEEEEEC
T ss_pred             CceEEEEECCCCCEEEEEE
Confidence            2357899999999887653

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=97.50  E-value=0.0042  Score=50.86  Aligned_cols=132  Identities=13%  Similarity=0.182  Sum_probs=82.2

Q ss_pred             CcceEEEcCCCCEEEEeCCCeEEEEecCCc-EEEeeeccCcCccCeEEcC-CCCEEEEeCCCCeEEEccCC--ceEEecc
Q 026389           78 GPEDVCVDRNGVLYTATRDGWIKRLHKNGT-WENWKLIGGDTLLGITTTQ-ENEILVCDADKGLLKVTEEG--VTVLASH  153 (239)
Q Consensus        78 gPe~ia~d~~G~ly~~~~~g~I~~~~~~G~-~~~~~~~~~~p~~Gl~~d~-~G~L~v~d~~~g~~~v~~~g--~~~l~~~  153 (239)
                      .-.+++++ +..+++++.+|.|..|+ .++ ...+........ .+.+.+ +++++++-...+.+++...+  ...+...
T Consensus       106 ~i~~~~~~-~~~l~~~~~d~~i~~~d-~~~~~~~~~~~~~~v~-~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~  182 (313)
T 3odt_A          106 NVCSLSFQ-DGVVISGSWDKTAKVWK-EGSLVYNLQAHNASVW-DAKVVSFSENKFLTASADKTIKLWQNDKVIKTFSGI  182 (313)
T ss_dssp             CEEEEEEE-TTEEEEEETTSEEEEEE-TTEEEEEEECCSSCEE-EEEEEETTTTEEEEEETTSCEEEEETTEEEEEECSS
T ss_pred             CEEEEEec-CCEEEEEeCCCCEEEEc-CCcEEEecccCCCcee-EEEEccCCCCEEEEEECCCCEEEEecCceEEEEecc
Confidence            34567774 34566778999999998 443 333333344455 677765 67666655556666665333  3333221


Q ss_pred             cCCccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEec-CCCCCcceEEEcCCCCEE
Q 026389          154 VNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILL-DSLFFANGVALSKDEDYL  232 (239)
Q Consensus       154 ~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~-~~l~~pnGia~s~dg~~l  232 (239)
                          .-.....+++.++|.++.+..                  .|.|..||..+++..... ..-...+.++++|+++ +
T Consensus       183 ----~~~~i~~~~~~~~~~~~~~~~------------------dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~-l  239 (313)
T 3odt_A          183 ----HNDVVRHLAVVDDGHFISCSN------------------DGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNGD-I  239 (313)
T ss_dssp             ----CSSCEEEEEEEETTEEEEEET------------------TSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSC-E
T ss_pred             ----CcccEEEEEEcCCCeEEEccC------------------CCeEEEEECCchhhhhhhhcCCceEEEEEEecCCC-E
Confidence                123467899999998554443                  478999998876654433 3345578899999985 4


Q ss_pred             EEE
Q 026389          233 VVC  235 (239)
Q Consensus       233 yva  235 (239)
                      +.+
T Consensus       240 ~~~  242 (313)
T 3odt_A          240 VSC  242 (313)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            443

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=97.50  E-value=0.0016  Score=57.23  Aligned_cols=135  Identities=10%  Similarity=0.073  Sum_probs=82.9

Q ss_pred             cceEEEcC-CCC-EEEEeCCCeEEEEecCCcE-EEeeecc---CcCccCeEEcCCCCEEEEeCCCCeEEEc-cCC--ceE
Q 026389           79 PEDVCVDR-NGV-LYTATRDGWIKRLHKNGTW-ENWKLIG---GDTLLGITTTQENEILVCDADKGLLKVT-EEG--VTV  149 (239)
Q Consensus        79 Pe~ia~d~-~G~-ly~~~~~g~I~~~~~~G~~-~~~~~~~---~~p~~Gl~~d~~G~L~v~d~~~g~~~v~-~~g--~~~  149 (239)
                      =.+|+|.| ++. |++++.||.|..||..++. ..+....   .... .++++++|+++++-...|.+++. .++  ...
T Consensus       167 V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~g~~dg~i~~wd~~~~~~~~  245 (435)
T 4e54_B          167 ITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFC-SLDVSASSRMVVTGDNVGNVILLNMDGKELWN  245 (435)
T ss_dssp             CCEEEECSSCTTEEEEECSSSCEEEEETTSCEEEEEECCSSCSCCCC-CEEEETTTTEEEEECSSSBEEEEESSSCBCCC
T ss_pred             EEEEEEeCCCCCEEEEEeCCCEEEEeeccCCceeEEeccCCCCccEE-EEEECCCCCEEEEEeCCCcEeeeccCcceeEE
Confidence            35789997 565 5577799999999976543 3332221   2234 78899999888877667777665 444  222


Q ss_pred             EecccCCccccccccEEEcCCCC-EEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEE-Eec---CCCCCcceEE
Q 026389          150 LASHVNGSRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETS-ILL---DSLFFANGVA  224 (239)
Q Consensus       150 l~~~~~g~~~~~pn~l~vd~dG~-iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~-~~~---~~l~~pnGia  224 (239)
                      +.    +. -...+.+++.|+|. ++++.+.                 .|.|..||..+.+.. .+.   ..-...+.++
T Consensus       246 ~~----~h-~~~v~~v~~~p~~~~~~~s~s~-----------------d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~  303 (435)
T 4e54_B          246 LR----MH-KKKVTHVALNPCCDWFLATASV-----------------DQTVKIWDLRQVRGKASFLYSLPHRHPVNAAC  303 (435)
T ss_dssp             SB----CC-SSCEEEEEECTTCSSEEEEEET-----------------TSBCCEEETTTCCSSSCCSBCCBCSSCEEECC
T ss_pred             Ee----cc-cceEEeeeecCCCceEEEEecC-----------------cceeeEEecccccccceEEEeeecccccccee
Confidence            21    11 12367899999984 5555433                 466777776543321 111   1112346788


Q ss_pred             EcCCCCEEEEEe
Q 026389          225 LSKDEDYLVVCE  236 (239)
Q Consensus       225 ~s~dg~~lyvad  236 (239)
                      |+|||++|+.+.
T Consensus       304 ~spdg~~l~s~~  315 (435)
T 4e54_B          304 FSPDGARLLTTD  315 (435)
T ss_dssp             BCTTSSEEEEEE
T ss_pred             ECCCCCeeEEEc
Confidence            999999877653

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=97.50  E-value=0.0095  Score=49.38  Aligned_cols=133  Identities=14%  Similarity=0.076  Sum_probs=82.1

Q ss_pred             cceEEEcCCC--CEE-EEeCCCeEEEEecC-CcE-EEeeeccCcCccCeEEcCCCCEEEEeCCCCeEEEc--cCC--ceE
Q 026389           79 PEDVCVDRNG--VLY-TATRDGWIKRLHKN-GTW-ENWKLIGGDTLLGITTTQENEILVCDADKGLLKVT--EEG--VTV  149 (239)
Q Consensus        79 Pe~ia~d~~G--~ly-~~~~~g~I~~~~~~-G~~-~~~~~~~~~p~~Gl~~d~~G~L~v~d~~~g~~~v~--~~g--~~~  149 (239)
                      ...+++.+++  .++ ++..++.|..|+.. ++. ..+....+... .++++++|+++++-...+.+++.  ..+  ...
T Consensus       174 v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~-~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~  252 (340)
T 4aow_A          174 VSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLN-TVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYT  252 (340)
T ss_dssp             EEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEE-EEEECTTSSEEEEEETTCEEEEEETTTTEEEEE
T ss_pred             ccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEE-EEEECCCCCEEEEEeCCCeEEEEEeccCceeee
Confidence            3456676543  344 55688999999864 333 22222334455 89999999888776667777775  333  222


Q ss_pred             EecccCCccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecC----------CCCC
Q 026389          150 LASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLD----------SLFF  219 (239)
Q Consensus       150 l~~~~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~----------~l~~  219 (239)
                      +.   ..   ...+.+.+.+++.+..+..                  .+.|..||.+++.......          ....
T Consensus       253 ~~---~~---~~v~~~~~~~~~~~~~~~~------------------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~  308 (340)
T 4aow_A          253 LD---GG---DIINALCFSPNRYWLCAAT------------------GPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQ  308 (340)
T ss_dssp             EE---CS---SCEEEEEECSSSSEEEEEE------------------TTEEEEEETTTTEEEEEECCC-------CCCCC
T ss_pred             ec---CC---ceEEeeecCCCCceeeccC------------------CCEEEEEECCCCeEEEeccccceeeeccCCCCC
Confidence            21   11   2356788888887766543                  3678888887665432221          1223


Q ss_pred             cceEEEcCCCCEEEEEe
Q 026389          220 ANGVALSKDEDYLVVCE  236 (239)
Q Consensus       220 pnGia~s~dg~~lyvad  236 (239)
                      .+.++|+|||++|+.+.
T Consensus       309 v~~l~~s~dg~~l~sgs  325 (340)
T 4aow_A          309 CTSLAWSADGQTLFAGY  325 (340)
T ss_dssp             EEEEEECTTSSEEEEEE
T ss_pred             EEEEEECCCCCEEEEEe
Confidence            47899999999887653

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=97.49  E-value=0.0023  Score=52.80  Aligned_cols=66  Identities=14%  Similarity=0.155  Sum_probs=42.6

Q ss_pred             CCcceEEEcC--CCCE-EEEeCCCeEEEEecCCc-----------EEEeeeccCcCccCeEEcCC--CCEEEEeCCCCeE
Q 026389           77 NGPEDVCVDR--NGVL-YTATRDGWIKRLHKNGT-----------WENWKLIGGDTLLGITTTQE--NEILVCDADKGLL  140 (239)
Q Consensus        77 ~gPe~ia~d~--~G~l-y~~~~~g~I~~~~~~G~-----------~~~~~~~~~~p~~Gl~~d~~--G~L~v~d~~~g~~  140 (239)
                      ..-.+++|.+  ++.+ ++++.+|.|..|+.+..           ...+........ .+++.++  ++++++-...+.+
T Consensus        58 ~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~~l~~~~~dg~v  136 (351)
T 3f3f_A           58 SSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLY-SVKFAPAHLGLKLACLGNDGIL  136 (351)
T ss_dssp             SCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEE-EEEECCGGGCSEEEEEETTCEE
T ss_pred             CcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCcee-EEEEcCCCCCcEEEEecCCCcE
Confidence            4566789988  4655 46779999999986431           222223334456 8899988  8766665556666


Q ss_pred             EEc
Q 026389          141 KVT  143 (239)
Q Consensus       141 ~v~  143 (239)
                      ++.
T Consensus       137 ~iw  139 (351)
T 3f3f_A          137 RLY  139 (351)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            554

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=97.48  E-value=0.0016  Score=54.37  Aligned_cols=137  Identities=12%  Similarity=0.120  Sum_probs=86.2

Q ss_pred             CCcceEEEcCCCC--EEEEeCCCeEEEEec-CC-cEEEeee--ccCcCccCeEEcCCCCEEEEeCCCCeEEEc--cC--C
Q 026389           77 NGPEDVCVDRNGV--LYTATRDGWIKRLHK-NG-TWENWKL--IGGDTLLGITTTQENEILVCDADKGLLKVT--EE--G  146 (239)
Q Consensus        77 ~gPe~ia~d~~G~--ly~~~~~g~I~~~~~-~G-~~~~~~~--~~~~p~~Gl~~d~~G~L~v~d~~~g~~~v~--~~--g  146 (239)
                      ....+++|+++|.  |++++.+|.|..|+. ++ +...+..  ...... .+++.+ ++++++....+.+++.  ..  +
T Consensus        57 ~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~-~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~  134 (342)
T 1yfq_A           57 HPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGIC-RICKYG-DDKLIAASWDGLIEVIDPRNYGD  134 (342)
T ss_dssp             SCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSEEECBSCCCCSCEE-EEEEET-TTEEEEEETTSEEEEECHHHHTT
T ss_pred             CceEEEEECCCCCcEEEEEcCCCeEEEEEeccCCceEeccccCCCCceE-EEEeCC-CCEEEEEcCCCeEEEEccccccc
Confidence            4567889999888  667789999999996 54 4544443  344455 888988 7766665556666664  22  1


Q ss_pred             -c----eEEecccCCccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCC-Ce--EEEe-cCCC
Q 026389          147 -V----TVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSL-NE--TSIL-LDSL  217 (239)
Q Consensus       147 -~----~~l~~~~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~-~~--~~~~-~~~l  217 (239)
                       .    ........  .-..+..+++.+++ ++++..                  .|.|..||..+ ++  .... ...-
T Consensus       135 ~~~~~~~~~~~~~~--~~~~v~~~~~~~~~-l~~~~~------------------d~~i~i~d~~~~~~~~~~~~~~~~~  193 (342)
T 1yfq_A          135 GVIAVKNLNSNNTK--VKNKIFTMDTNSSR-LIVGMN------------------NSQVQWFRLPLCEDDNGTIEESGLK  193 (342)
T ss_dssp             BCEEEEESCSSSSS--SCCCEEEEEECSSE-EEEEES------------------TTEEEEEESSCCTTCCCEEEECSCS
T ss_pred             ccccccCCeeeEEe--eCCceEEEEecCCc-EEEEeC------------------CCeEEEEECCccccccceeeecCCC
Confidence             0    11111111  11346788888887 555543                  47899999876 32  2222 2233


Q ss_pred             CCcceEEEcC-CCCEEEEEe
Q 026389          218 FFANGVALSK-DEDYLVVCE  236 (239)
Q Consensus       218 ~~pnGia~s~-dg~~lyvad  236 (239)
                      .....++++| +++.++++.
T Consensus       194 ~~i~~i~~~~~~~~~l~~~~  213 (342)
T 1yfq_A          194 YQIRDVALLPKEQEGYACSS  213 (342)
T ss_dssp             SCEEEEEECSGGGCEEEEEE
T ss_pred             CceeEEEECCCCCCEEEEEe
Confidence            4578899999 998877654

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=97.47  E-value=0.0054  Score=52.15  Aligned_cols=139  Identities=13%  Similarity=0.053  Sum_probs=80.0

Q ss_pred             CcceEEEcCCCC--EEEEeCCCeEEEEecC-C--cEEEe---------------eeccCcCccCeEEcCCCCEEEEeCCC
Q 026389           78 GPEDVCVDRNGV--LYTATRDGWIKRLHKN-G--TWENW---------------KLIGGDTLLGITTTQENEILVCDADK  137 (239)
Q Consensus        78 gPe~ia~d~~G~--ly~~~~~g~I~~~~~~-G--~~~~~---------------~~~~~~p~~Gl~~d~~G~L~v~d~~~  137 (239)
                      ...++++.+++.  +++++.+|.|..|+.. +  ....+               ........ .+++.++|+.+++-...
T Consensus       188 ~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~d  266 (408)
T 4a11_B          188 EILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVN-GLCFTSDGLHLLTVGTD  266 (408)
T ss_dssp             CEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEE-EEEECTTSSEEEEEETT
T ss_pred             cEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCcee-EEEEcCCCCEEEEecCC
Confidence            456789999876  5577899999999853 2  12222               11223345 78999999866665556


Q ss_pred             CeEEEc--cCC-c-eEEecccCCccccccccEEE--cCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEE
Q 026389          138 GLLKVT--EEG-V-TVLASHVNGSRINLADDLIA--ATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETS  211 (239)
Q Consensus       138 g~~~v~--~~g-~-~~l~~~~~g~~~~~pn~l~v--d~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~  211 (239)
                      +.+++.  .++ . ........... .......+  +..+.+.++..                  .+.|..||..+++..
T Consensus       267 g~i~vwd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~------------------~~~i~v~d~~~~~~~  327 (408)
T 4a11_B          267 NRMRLWNSSNGENTLVNYGKVCNNS-KKGLKFTVSCGCSSEFVFVPY------------------GSTIAVYTVYSGEQI  327 (408)
T ss_dssp             SCEEEEETTTCCBCCCCCCCCCCCC-SSCCCCEECCSSSSCEEEEEE------------------TTEEEEEETTTCCEE
T ss_pred             CeEEEEECCCCccceeccccccccc-cccceeEEecCCCceEEEEec------------------CCEEEEEECcCCcce
Confidence            666654  344 2 11111111100 01111222  22234444432                  478999998777665


Q ss_pred             EecC-CCCCcceEEEcCCCCEEEEEe
Q 026389          212 ILLD-SLFFANGVALSKDEDYLVVCE  236 (239)
Q Consensus       212 ~~~~-~l~~pnGia~s~dg~~lyvad  236 (239)
                      .... .-...+.++|+||+++|+.+.
T Consensus       328 ~~~~~~~~~v~~~~~s~~~~~l~s~~  353 (408)
T 4a11_B          328 TMLKGHYKTVDCCVFQSNFQELYSGS  353 (408)
T ss_dssp             EEECCCSSCEEEEEEETTTTEEEEEE
T ss_pred             eeeccCCCeEEEEEEcCCCCEEEEEC
Confidence            5444 334568899999999887664

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=97.45  E-value=0.0067  Score=58.99  Aligned_cols=136  Identities=10%  Similarity=0.013  Sum_probs=86.1

Q ss_pred             cceEEEcCCCC-EEEEeCCCeEEEEecC-CcE-EEeeeccCcCccCeEEcCCCCEEEEeCCCCeEEEc--cCC-ceEE-e
Q 026389           79 PEDVCVDRNGV-LYTATRDGWIKRLHKN-GTW-ENWKLIGGDTLLGITTTQENEILVCDADKGLLKVT--EEG-VTVL-A  151 (239)
Q Consensus        79 Pe~ia~d~~G~-ly~~~~~g~I~~~~~~-G~~-~~~~~~~~~p~~Gl~~d~~G~L~v~d~~~g~~~v~--~~g-~~~l-~  151 (239)
                      -.+++|.+ |. |++++.|+.|..|+.+ ++. ..+. ..+... .++++++|+.+++-...|.+++.  ..+ ...+ .
T Consensus        61 V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~~~~~~~-~~~~V~-~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i  137 (902)
T 2oaj_A           61 IKEMRFVK-GIYLVVINAKDTVYVLSLYSQKVLTTVF-VPGKIT-SIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKL  137 (902)
T ss_dssp             EEEEEEET-TTEEEEEETTCEEEEEETTTCSEEEEEE-CSSCEE-EEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEE
T ss_pred             EEEEEEcC-CCEEEEEECcCeEEEEECCCCcEEEEEc-CCCCEE-EEEECCCCCEEEEEcCCCcEEEEECCCCcccccee
Confidence            45789999 66 6777899999999964 443 3332 334556 88999999766555456666665  344 2211 1


Q ss_pred             -------cccCCccccccccEEEcCCC-CEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecCCC------
Q 026389          152 -------SHVNGSRINLADDLIAATDG-SIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSL------  217 (239)
Q Consensus       152 -------~~~~g~~~~~pn~l~vd~dG-~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~~l------  217 (239)
                             ....+ .....+.++++|++ .++++...                 .|.| .||..+++.......-      
T Consensus       138 ~~~~~~~~~~~~-h~~~V~sl~~sp~~~~~l~~g~~-----------------dg~v-lWd~~~~~~~~~~~~~~~~g~~  198 (902)
T 2oaj_A          138 DNLQKSSFFPAA-RLSPIVSIQWNPRDIGTVLISYE-----------------YVTL-TYSLVENEIKQSFIYELPPFAP  198 (902)
T ss_dssp             CCHHHHHTCSSS-CCCCCCEEEEETTEEEEEEEECS-----------------SCEE-EEETTTTEEEEEECCCBCTTCC
T ss_pred             cccccccccccc-CCCCeEEEEEccCCCCEEEEEeC-----------------CCcE-EEECCCCceEEEEecccCCcCC
Confidence                   01111 12347889999974 55554433                 4788 9998877654433321      


Q ss_pred             -------------CCcceEEEcCCCCEEEEEe
Q 026389          218 -------------FFANGVALSKDEDYLVVCE  236 (239)
Q Consensus       218 -------------~~pnGia~s~dg~~lyvad  236 (239)
                                   ...+.++|+|||++|..+.
T Consensus       199 ~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs  230 (902)
T 2oaj_A          199 GGDFSEKTNEKRTPKVIQSLYHPNSLHIITIH  230 (902)
T ss_dssp             CSTTCCCTTSCBCCCEEEEEECTTSSEEEEEE
T ss_pred             CcccccccccccCCCeEEEEEcCCCCEEEEEE
Confidence                         3468899999999776553

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=97.43  E-value=0.001  Score=56.81  Aligned_cols=149  Identities=8%  Similarity=0.031  Sum_probs=82.2

Q ss_pred             CcceEEEcC-CCC-EEEEeC--C----CeEEEEecCCc-EEEeeec--cCcCccCeEEcCCCC-EEEEe-C-C-CC--eE
Q 026389           78 GPEDVCVDR-NGV-LYTATR--D----GWIKRLHKNGT-WENWKLI--GGDTLLGITTTQENE-ILVCD-A-D-KG--LL  140 (239)
Q Consensus        78 gPe~ia~d~-~G~-ly~~~~--~----g~I~~~~~~G~-~~~~~~~--~~~p~~Gl~~d~~G~-L~v~d-~-~-~g--~~  140 (239)
                      ....++|++ +|. |++...  .    .+|+.++.++. .+.+...  ..... .+++.++|+ |+++. . . ..  ++
T Consensus       189 ~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~-~~~~spdg~~l~~~~~~~~~~~~~l~  267 (396)
T 3c5m_A          189 WLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCT-HEFWIPDGSAMAYVSYFKGQTDRVIY  267 (396)
T ss_dssp             CEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEE-EEEECTTSSCEEEEEEETTTCCEEEE
T ss_pred             ccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCcccc-ceEECCCCCEEEEEecCCCCccceEE
Confidence            345678988 664 554432  2    57999987553 3333221  11344 678999996 55442 2 1 22  55


Q ss_pred             EEc-cCC-ceEEecccCCccccccccEEEcC-CCCEEEEeCCCC-cCcccccccceeecCCceEEEEeCCCCeEEEecCC
Q 026389          141 KVT-EEG-VTVLASHVNGSRINLADDLIAAT-DGSIYFSVASTK-FGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDS  216 (239)
Q Consensus       141 ~v~-~~g-~~~l~~~~~g~~~~~pn~l~vd~-dG~iy~td~~~~-~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~~  216 (239)
                      .++ .+| .+.+.. ..+     .+ +.+.+ ||++++...+.. +...+  ...........|+++|.++++.+.+...
T Consensus       268 ~~d~~~g~~~~l~~-~~~-----~~-~~~s~~dg~~l~~~~~~~p~~~~~--~~~~~~~~~~~i~~~d~~~~~~~~l~~~  338 (396)
T 3c5m_A          268 KANPETLENEEVMV-MPP-----CS-HLMSNFDGSLMVGDGCDAPVDVAD--ADSYNIENDPFLYVLNTKAKSAQKLCKH  338 (396)
T ss_dssp             EECTTTCCEEEEEE-CCS-----EE-EEEECSSSSEEEEEECCC------------CCCCCCEEEEEETTTTBCCEEEEC
T ss_pred             EEECCCCCeEEeee-CCC-----CC-CCccCCCCceEEEecCCcceeecc--ccccccCCCCcEEEEecccCceEEccCC
Confidence            566 455 444432 222     12 78888 998776543200 00000  0000011347899999988876555432


Q ss_pred             CC-----------CcceEEEcCCCCEEEEEe
Q 026389          217 LF-----------FANGVALSKDEDYLVVCE  236 (239)
Q Consensus       217 l~-----------~pnGia~s~dg~~lyvad  236 (239)
                      ..           ....++|+|||+.|+++.
T Consensus       339 ~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s  369 (396)
T 3c5m_A          339 STSWDVLDGDRQITHPHPSFTPNDDGVLFTS  369 (396)
T ss_dssp             CCCCCCBTTBSSTTCCCCEECTTSSEEEEEE
T ss_pred             CCccccccccccCCCCCceEccCCCeEEEEe
Confidence            22           255689999999887664

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=97.42  E-value=0.0049  Score=52.41  Aligned_cols=134  Identities=12%  Similarity=0.045  Sum_probs=80.1

Q ss_pred             CCcceEEEcC-CCCEE-EEeCCCeEEEEecCC-cE-EEee-------------eccCcCccCeEEcC-CCCEEEEeCCCC
Q 026389           77 NGPEDVCVDR-NGVLY-TATRDGWIKRLHKNG-TW-ENWK-------------LIGGDTLLGITTTQ-ENEILVCDADKG  138 (239)
Q Consensus        77 ~gPe~ia~d~-~G~ly-~~~~~g~I~~~~~~G-~~-~~~~-------------~~~~~p~~Gl~~d~-~G~L~v~d~~~g  138 (239)
                      ..-.++++++ +|.++ +++.+|.|..|+.+. +. ..+.             ....... .+++.+ +++++++-...+
T Consensus        44 ~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~l~s~~~d~  122 (408)
T 4a11_B           44 GGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVE-TVQWYPHDTGMFTSSSFDK  122 (408)
T ss_dssp             SCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEE-EEEECTTCTTCEEEEETTS
T ss_pred             CcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEE-EEEEccCCCcEEEEEeCCC
Confidence            4556789999 88755 667899999998643 21 1110             0223445 788888 566666655567


Q ss_pred             eEEEc--cCC-ceEEecccCCccccccccEEEcCC---CCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEE
Q 026389          139 LLKVT--EEG-VTVLASHVNGSRINLADDLIAATD---GSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSI  212 (239)
Q Consensus       139 ~~~v~--~~g-~~~l~~~~~g~~~~~pn~l~vd~d---G~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~  212 (239)
                      .+++.  ..+ ...... ..    .....+.+.+.   +.++++...                 .|.|..||..+++...
T Consensus       123 ~i~iwd~~~~~~~~~~~-~~----~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~v~~~d~~~~~~~~  180 (408)
T 4a11_B          123 TLKVWDTNTLQTADVFN-FE----ETVYSHHMSPVSTKHCLVAVGTR-----------------GPKVQLCDLKSGSCSH  180 (408)
T ss_dssp             EEEEEETTTTEEEEEEE-CS----SCEEEEEECSSCSSCCEEEEEES-----------------SSSEEEEESSSSCCCE
T ss_pred             eEEEeeCCCCccceecc-CC----CceeeeEeecCCCCCcEEEEEcC-----------------CCeEEEEeCCCcceee
Confidence            77665  344 222221 11    12456666663   335554433                 4789999987665433


Q ss_pred             ec-CCCCCcceEEEcCCCCEEE
Q 026389          213 LL-DSLFFANGVALSKDEDYLV  233 (239)
Q Consensus       213 ~~-~~l~~pnGia~s~dg~~ly  233 (239)
                      .. ..-...+.++++|++++++
T Consensus       181 ~~~~~~~~v~~~~~~~~~~~ll  202 (408)
T 4a11_B          181 ILQGHRQEILAVSWSPRYDYIL  202 (408)
T ss_dssp             EECCCCSCEEEEEECSSCTTEE
T ss_pred             eecCCCCcEEEEEECCCCCcEE
Confidence            33 3344568899999998533

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=97.41  E-value=0.0098  Score=49.31  Aligned_cols=140  Identities=12%  Similarity=0.078  Sum_probs=83.8

Q ss_pred             CCcceEEEcCCCCEE-EEeCCCeEEEEecCCcEE--EeeeccCcCccCeEEcCCCCEEEEeCCCCeEEEc-cCC-ceEEe
Q 026389           77 NGPEDVCVDRNGVLY-TATRDGWIKRLHKNGTWE--NWKLIGGDTLLGITTTQENEILVCDADKGLLKVT-EEG-VTVLA  151 (239)
Q Consensus        77 ~gPe~ia~d~~G~ly-~~~~~g~I~~~~~~G~~~--~~~~~~~~p~~Gl~~d~~G~L~v~d~~~g~~~v~-~~g-~~~l~  151 (239)
                      ..-.+++|+++|.+. +++.++.|..++......  .......... .+.+.++++.+++-...+.+++. ..+ .....
T Consensus        87 ~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~  165 (340)
T 4aow_A           87 HFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVL-SVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTV  165 (340)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEE-EEEECTTSSCEEEEETTSCEEEECTTSCEEEEE
T ss_pred             CCEEEEEECCCCCEEEEEcccccceEEeecccceeeeecCCCCcee-EEEEeecCccceeecCCCeEEEEEeCCCceEEE
Confidence            356679999998755 667999999988654322  2222223344 56666777666555455666654 333 22221


Q ss_pred             cccCCccccccccEEEcCCC--CEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecCC-CCCcceEEEcCC
Q 026389          152 SHVNGSRINLADDLIAATDG--SIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDS-LFFANGVALSKD  228 (239)
Q Consensus       152 ~~~~g~~~~~pn~l~vd~dG--~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~~-l~~pnGia~s~d  228 (239)
                      . ..+. -.....+++.+++  .++++...                 .+.|..||..+++......+ -...+.|+|+||
T Consensus       166 ~-~~~~-~~~v~~~~~~~~~~~~~~~s~~~-----------------d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~  226 (340)
T 4aow_A          166 Q-DESH-SEWVSCVRFSPNSSNPIIVSCGW-----------------DKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPD  226 (340)
T ss_dssp             C-SSSC-SSCEEEEEECSCSSSCEEEEEET-----------------TSCEEEEETTTTEEEEEECCCSSCEEEEEECTT
T ss_pred             E-eccc-cCcccceEEccCCCCcEEEEEcC-----------------CCEEEEEECCCCceeeEecCCCCcEEEEEECCC
Confidence            1 1111 1234566777664  45555433                 46788899887776555443 334578999999


Q ss_pred             CCEEEEEe
Q 026389          229 EDYLVVCE  236 (239)
Q Consensus       229 g~~lyvad  236 (239)
                      |++|+.+.
T Consensus       227 ~~~l~s~s  234 (340)
T 4aow_A          227 GSLCASGG  234 (340)
T ss_dssp             SSEEEEEE
T ss_pred             CCEEEEEe
Confidence            99877653

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=97.38  E-value=0.0095  Score=49.37  Aligned_cols=130  Identities=18%  Similarity=0.142  Sum_probs=76.8

Q ss_pred             cceEEEcCCCCEE-EEeCCCeEEEEecCC---c-EEEeeeccCcCccCeEEcC--CCCEEEEeCCCCeEEEc--cCC-ce
Q 026389           79 PEDVCVDRNGVLY-TATRDGWIKRLHKNG---T-WENWKLIGGDTLLGITTTQ--ENEILVCDADKGLLKVT--EEG-VT  148 (239)
Q Consensus        79 Pe~ia~d~~G~ly-~~~~~g~I~~~~~~G---~-~~~~~~~~~~p~~Gl~~d~--~G~L~v~d~~~g~~~v~--~~g-~~  148 (239)
                      -.+++|+++|+.. +++.|+.|..|+.++   + ...+....+... .+++.+  +|+++++-...+.+++.  .++ .+
T Consensus        12 V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~-~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~   90 (297)
T 2pm7_B           12 IHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVW-RVDWAHPKFGTILASCSYDGKVMIWKEENGRWS   90 (297)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEE-EEEECCGGGCSEEEEEETTTEEEEEEBSSSCBC
T ss_pred             eEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeE-EEEecCCCcCCEEEEEcCCCEEEEEEcCCCceE
Confidence            4578999998755 667999999998643   2 233333333445 788864  47777776667888775  344 22


Q ss_pred             EEecccCCccccccccEEEcCC--CCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCe---EEEecCCCCCcceE
Q 026389          149 VLASHVNGSRINLADDLIAATD--GSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNE---TSILLDSLFFANGV  223 (239)
Q Consensus       149 ~l~~~~~g~~~~~pn~l~vd~d--G~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~---~~~~~~~l~~pnGi  223 (239)
                      .+.. ..+. -...+.+++.|+  |.++++-+.                 .|.|..||..++.   ...+...-...+.+
T Consensus        91 ~~~~-~~~h-~~~v~~v~~~p~~~g~~l~s~s~-----------------d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~  151 (297)
T 2pm7_B           91 QIAV-HAVH-SASVNSVQWAPHEYGPMLLVASS-----------------DGKVSVVEFKENGTTSPIIIDAHAIGVNSA  151 (297)
T ss_dssp             CCEE-ECCC-SSCEEEEEECCGGGCSEEEEEET-----------------TSEEEEEEBCSSSCBCCEEEECCSSCEEEE
T ss_pred             EEEE-eecC-CCceeEEEeCcCCCCcEEEEEEC-----------------CCcEEEEEecCCCceeeeeeecccCccceE
Confidence            2111 1111 124678999987  776665443                 4677778765432   12222223345677


Q ss_pred             EEcCC
Q 026389          224 ALSKD  228 (239)
Q Consensus       224 a~s~d  228 (239)
                      +|+|+
T Consensus       152 ~~~p~  156 (297)
T 2pm7_B          152 SWAPA  156 (297)
T ss_dssp             EECCC
T ss_pred             eecCC
Confidence            77776

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=97.36  E-value=0.009  Score=49.53  Aligned_cols=139  Identities=16%  Similarity=0.107  Sum_probs=80.0

Q ss_pred             CcceEEEcCC--CC-EEEEeCCCeEEEEecC-C-c--EEEeeeccCcCccCeEEcCC-------------CCEEEEeCCC
Q 026389           78 GPEDVCVDRN--GV-LYTATRDGWIKRLHKN-G-T--WENWKLIGGDTLLGITTTQE-------------NEILVCDADK  137 (239)
Q Consensus        78 gPe~ia~d~~--G~-ly~~~~~g~I~~~~~~-G-~--~~~~~~~~~~p~~Gl~~d~~-------------G~L~v~d~~~  137 (239)
                      .-.+++|.++  |. |.+++.++.|..|+.. + .  ...+........ .+++.++             ++++++-...
T Consensus       101 ~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~-~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D  179 (297)
T 2pm7_B          101 SVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVN-SASWAPATIEEDGEHNGTKESRKFVTGGAD  179 (297)
T ss_dssp             CEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEE-EEEECCCC------------CCEEEEEETT
T ss_pred             ceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccc-eEeecCCcccccccCCCCCCcceEEEEcCC
Confidence            4567899885  65 4577799999998853 2 1  122222223344 6777765             4566666556


Q ss_pred             CeEEEc--cCC-c-eEEecccCCccccccccEEEcCCC---CEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCe-
Q 026389          138 GLLKVT--EEG-V-TVLASHVNGSRINLADDLIAATDG---SIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNE-  209 (239)
Q Consensus       138 g~~~v~--~~g-~-~~l~~~~~g~~~~~pn~l~vd~dG---~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~-  209 (239)
                      +.+++.  ..+ . ..+.....+.. ...+.+++.|+|   .++++-+.                 .+.|..||.++++ 
T Consensus       180 ~~v~lwd~~~~~~~~~~~~~l~~H~-~~V~~v~~sp~~~~~~~las~s~-----------------D~~v~iWd~~~~~~  241 (297)
T 2pm7_B          180 NLVKIWKYNSDAQTYVLESTLEGHS-DWVRDVAWSPTVLLRSYMASVSQ-----------------DRTCIIWTQDNEQG  241 (297)
T ss_dssp             SCEEEEEEETTTTEEEEEEEECCCS-SCEEEEEECCCCSSSEEEEEEET-----------------TSCEEEEEESSTTS
T ss_pred             CcEEEEEEcCCCceEEEEEEecCCC-CceEEEEECCCCCCceEEEEEEC-----------------CCcEEEEEeCCCCC
Confidence            777664  333 1 11222222321 346889999985   55555443                 4677777765432 


Q ss_pred             --EEEec--CC-CCCcceEEEcCCCCEEEEE
Q 026389          210 --TSILL--DS-LFFANGVALSKDEDYLVVC  235 (239)
Q Consensus       210 --~~~~~--~~-l~~pnGia~s~dg~~lyva  235 (239)
                        ...+.  .. -.....++|+|||++|..+
T Consensus       242 ~~~~~~~~~~~~~~~v~~~~~s~~g~~las~  272 (297)
T 2pm7_B          242 PWKKTLLKEEKFPDVLWRASWSLSGNVLALS  272 (297)
T ss_dssp             CCEEEESSSSCCSSCEEEEEECSSSCCEEEE
T ss_pred             ccceeeeecccCCCcEEEEEECCCCCEEEEE
Confidence              22222  12 2235678999999977654

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=97.34  E-value=0.0076  Score=50.34  Aligned_cols=110  Identities=11%  Similarity=0.078  Sum_probs=71.4

Q ss_pred             CCcceEEEcCC---CC-EEEEeCCCeEEEEecC--CcE--EEeeeccCcCccCeEEcCCCCEEEEeCCCCeEEEc--cCC
Q 026389           77 NGPEDVCVDRN---GV-LYTATRDGWIKRLHKN--GTW--ENWKLIGGDTLLGITTTQENEILVCDADKGLLKVT--EEG  146 (239)
Q Consensus        77 ~gPe~ia~d~~---G~-ly~~~~~g~I~~~~~~--G~~--~~~~~~~~~p~~Gl~~d~~G~L~v~d~~~g~~~v~--~~g  146 (239)
                      ..-.+++|+++   |. |++++.+|.|..|+.+  ++.  ..+........ .+++.++|+++++-...|.+++.  .++
T Consensus        40 ~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~-~~~~~~~~~~l~s~~~dg~v~iwd~~~~  118 (368)
T 3mmy_A           40 DSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVL-DVCWSDDGSKVFTASCDKTAKMWDLSSN  118 (368)
T ss_dssp             SCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEE-EEEECTTSSEEEEEETTSEEEEEETTTT
T ss_pred             CceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEE-EEEECcCCCEEEEEcCCCcEEEEEcCCC
Confidence            45678999997   45 5577799999998864  433  33333445566 89999999876666667777765  344


Q ss_pred             -ceEEecccCCccccccccEEE--cCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCe
Q 026389          147 -VTVLASHVNGSRINLADDLIA--ATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNE  209 (239)
Q Consensus       147 -~~~l~~~~~g~~~~~pn~l~v--d~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~  209 (239)
                       ...+...  .   .....+++  +++|.++++...                 .|.|..||..+++
T Consensus       119 ~~~~~~~~--~---~~v~~~~~~~~~~~~~l~~~~~-----------------dg~i~vwd~~~~~  162 (368)
T 3mmy_A          119 QAIQIAQH--D---APVKTIHWIKAPNYSCVMTGSW-----------------DKTLKFWDTRSSN  162 (368)
T ss_dssp             EEEEEEEC--S---SCEEEEEEEECSSCEEEEEEET-----------------TSEEEEECSSCSS
T ss_pred             Cceeeccc--c---CceEEEEEEeCCCCCEEEEccC-----------------CCcEEEEECCCCc
Confidence             2222221  1   23577888  888876666543                 4677778876554

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=97.33  E-value=0.002  Score=57.29  Aligned_cols=137  Identities=15%  Similarity=0.134  Sum_probs=81.1

Q ss_pred             CcceEEEcCCCCEEE----E-eCCCeEEEEecC-C--------c----EEEeeeccCcCccCeEEcCC-CCEEEEeCCCC
Q 026389           78 GPEDVCVDRNGVLYT----A-TRDGWIKRLHKN-G--------T----WENWKLIGGDTLLGITTTQE-NEILVCDADKG  138 (239)
Q Consensus        78 gPe~ia~d~~G~ly~----~-~~~g~I~~~~~~-G--------~----~~~~~~~~~~p~~Gl~~d~~-G~L~v~d~~~g  138 (239)
                      ...+++|+++|+..+    + +.++.|..|+.. +        +    ...+........ +++++++ ++++++-...|
T Consensus        94 ~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~-~v~~~p~~~~~las~s~Dg  172 (434)
T 2oit_A           94 PIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVI-DMKWNPTVPSMVAVCLADG  172 (434)
T ss_dssp             CEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEE-EEEECSSCTTEEEEEETTS
T ss_pred             cccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceE-EEEECCCCCCEEEEEECCC
Confidence            477899999987554    3 368888888742 1        1    111111234566 8999987 67777665667


Q ss_pred             eEEEc--cCCceEEecccCCccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecCC
Q 026389          139 LLKVT--EEGVTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDS  216 (239)
Q Consensus       139 ~~~v~--~~g~~~l~~~~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~~  216 (239)
                      .+++.  ..+.......  +. -.....++++++|...++-..                 .|.|..||.++.....+...
T Consensus       173 ~v~iwD~~~~~~~~~~~--~~-~~~v~~v~wspdg~~lasgs~-----------------dg~v~iwd~~~~~~~~~~~~  232 (434)
T 2oit_A          173 SIAVLQVTETVKVCATL--PS-TVAVTSVCWSPKGKQLAVGKQ-----------------NGTVVQYLPTLQEKKVIPCP  232 (434)
T ss_dssp             CEEEEEESSSEEEEEEE--CG-GGCEEEEEECTTSSCEEEEET-----------------TSCEEEECTTCCEEEEECCC
T ss_pred             eEEEEEcCCCcceeecc--CC-CCceeEEEEcCCCCEEEEEcC-----------------CCcEEEEccCCcccccccCC
Confidence            77765  3442221111  11 134688999999965554433                 47899999873333333211


Q ss_pred             CC-------CcceEEEcCCCCEEEEE
Q 026389          217 LF-------FANGVALSKDEDYLVVC  235 (239)
Q Consensus       217 l~-------~pnGia~s~dg~~lyva  235 (239)
                      ..       ....+++++++.++.+.
T Consensus       233 ~~~~~~~~~~v~~v~w~~~~~~l~~~  258 (434)
T 2oit_A          233 PFYESDHPVRVLDVLWIGTYVFAIVY  258 (434)
T ss_dssp             TTCCTTSCEEEEEEEEEETTEEEEEE
T ss_pred             cccCCCCceeEEEEEEecCceEEEEE
Confidence            11       34577888877655443

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=97.33  E-value=0.0054  Score=59.66  Aligned_cols=134  Identities=14%  Similarity=0.070  Sum_probs=84.9

Q ss_pred             CCcceEEEcCCCCEE-EEeCCCeEEEEecCCcEEEeee-ccCcCccCeEEcCCCCEEEEeCCCCeEEEc--cCC--ceEE
Q 026389           77 NGPEDVCVDRNGVLY-TATRDGWIKRLHKNGTWENWKL-IGGDTLLGITTTQENEILVCDADKGLLKVT--EEG--VTVL  150 (239)
Q Consensus        77 ~gPe~ia~d~~G~ly-~~~~~g~I~~~~~~G~~~~~~~-~~~~p~~Gl~~d~~G~L~v~d~~~g~~~v~--~~g--~~~l  150 (239)
                      ....+++|+++|.+. +++.+|.|..|+..+....... ...... .++|.+ |+++++-...+.+++.  .++  ...+
T Consensus        18 ~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~~~~~~~V~-~l~fsp-g~~L~S~s~D~~v~lWd~~~~~~~~~~   95 (902)
T 2oaj_A           18 SKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIKLEDRSAIK-EMRFVK-GIYLVVINAKDTVYVLSLYSQKVLTTV   95 (902)
T ss_dssp             SCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEEECSSCCCEE-EEEEET-TTEEEEEETTCEEEEEETTTCSEEEEE
T ss_pred             CCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEEEcCCCCCEE-EEEEcC-CCEEEEEECcCeEEEEECCCCcEEEEE
Confidence            456789999999766 6779999999987543222222 223345 899988 8754544456777765  345  3333


Q ss_pred             ecccCCccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEe------------cCCCC
Q 026389          151 ASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSIL------------LDSLF  218 (239)
Q Consensus       151 ~~~~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~------------~~~l~  218 (239)
                      .  ..    .....++++++|+..++-..                 .|.|..||.++++....            .....
T Consensus        96 ~--~~----~~V~~v~~sp~g~~l~sgs~-----------------dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~  152 (902)
T 2oaj_A           96 F--VP----GKITSIDTDASLDWMLIGLQ-----------------NGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLS  152 (902)
T ss_dssp             E--CS----SCEEEEECCTTCSEEEEEET-----------------TSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCC
T ss_pred             c--CC----CCEEEEEECCCCCEEEEEcC-----------------CCcEEEEECCCCccccceeccccccccccccCCC
Confidence            2  11    24678999999976555433                 47899999987765321            11123


Q ss_pred             CcceEEEcCCC-CEEEEE
Q 026389          219 FANGVALSKDE-DYLVVC  235 (239)
Q Consensus       219 ~pnGia~s~dg-~~lyva  235 (239)
                      ..+.|+|+|++ +.++++
T Consensus       153 ~V~sl~~sp~~~~~l~~g  170 (902)
T 2oaj_A          153 PIVSIQWNPRDIGTVLIS  170 (902)
T ss_dssp             CCCEEEEETTEEEEEEEE
T ss_pred             CeEEEEEccCCCCEEEEE
Confidence            46789999964 445443

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=97.31  E-value=0.0022  Score=60.91  Aligned_cols=141  Identities=16%  Similarity=0.094  Sum_probs=84.9

Q ss_pred             CCcceEEEcCC--CCEE-EEeCCCeEEEEecCCc----EEEeeeccCcCccCeEEcC-------------CCCEEEEeCC
Q 026389           77 NGPEDVCVDRN--GVLY-TATRDGWIKRLHKNGT----WENWKLIGGDTLLGITTTQ-------------ENEILVCDAD  136 (239)
Q Consensus        77 ~gPe~ia~d~~--G~ly-~~~~~g~I~~~~~~G~----~~~~~~~~~~p~~Gl~~d~-------------~G~L~v~d~~  136 (239)
                      ..-.+++|.++  |.++ +++.+|.|..|+....    ...+........ .+++.+             +|+++++...
T Consensus       100 ~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~-~l~~~p~~~~~~~~~~~~~d~~~l~sgs~  178 (753)
T 3jro_A          100 ASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVN-SASWAPATIEEDGEHNGTKESRKFVTGGA  178 (753)
T ss_dssp             SCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEE-EEEECCCC---------CGGGCCEEEEET
T ss_pred             CCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceE-EEEecCcccccccccccCCCCCEEEEEEC
Confidence            45667899987  7655 6779999999986322    222222333445 778877             4665555555


Q ss_pred             CCeEEEc--cCC--ceEEecccCCccccccccEEEcCC---CCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCe
Q 026389          137 KGLLKVT--EEG--VTVLASHVNGSRINLADDLIAATD---GSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNE  209 (239)
Q Consensus       137 ~g~~~v~--~~g--~~~l~~~~~g~~~~~pn~l~vd~d---G~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~  209 (239)
                      .|.+++.  ..+  .........+. -.....+++.|+   |.+.++.+.                 .|.|..||..+++
T Consensus       179 dg~I~iwd~~~~~~~~~~~~~~~~h-~~~V~~l~~sp~~~~~~~l~s~s~-----------------Dg~I~iwd~~~~~  240 (753)
T 3jro_A          179 DNLVKIWKYNSDAQTYVLESTLEGH-SDWVRDVAWSPTVLLRSYLASVSQ-----------------DRTCIIWTQDNEQ  240 (753)
T ss_dssp             TSCEEEEEEETTTTEEEEEEEECCC-SSCEEEEEECCCCSSSEEEEEEES-----------------SSCEEEEEESSSS
T ss_pred             CCeEEEEeccCCcccceeeeeecCC-CCcEEEEEeccCCCCCCEEEEEec-----------------CCEEEEecCCCCC
Confidence            6666654  333  21222222221 134688999999   877666543                 4788888877653


Q ss_pred             E---EEecC---CCCCcceEEEcCCCCEEEEEe
Q 026389          210 T---SILLD---SLFFANGVALSKDEDYLVVCE  236 (239)
Q Consensus       210 ~---~~~~~---~l~~pnGia~s~dg~~lyvad  236 (239)
                      .   ..+..   .-.....++|+|||++|+++.
T Consensus       241 ~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s  273 (753)
T 3jro_A          241 GPWKKTLLKEEKFPDVLWRASWSLSGNVLALSG  273 (753)
T ss_dssp             SCCBCCBSSSSCCSSCCCCEEECTTTCCEEEEC
T ss_pred             CcceeEEeccCCCCCceEEEEEcCCCCEEEEEc
Confidence            1   11111   223457899999999877653

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=97.29  E-value=0.0041  Score=52.03  Aligned_cols=112  Identities=12%  Similarity=0.064  Sum_probs=71.5

Q ss_pred             CcceEEEcCC----CC-EEEEeCCCeEEEEecC-CcE-EEeeeccCcCccCeEEcC-CCCEEEEeCCCCeEEEc--cCC-
Q 026389           78 GPEDVCVDRN----GV-LYTATRDGWIKRLHKN-GTW-ENWKLIGGDTLLGITTTQ-ENEILVCDADKGLLKVT--EEG-  146 (239)
Q Consensus        78 gPe~ia~d~~----G~-ly~~~~~g~I~~~~~~-G~~-~~~~~~~~~p~~Gl~~d~-~G~L~v~d~~~g~~~v~--~~g-  146 (239)
                      .-.+++|.++    |. |++++.+|.|..|+.+ ++. ..+........ .+++.+ +++++++-...|.+++.  .++ 
T Consensus        71 ~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~-~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~  149 (366)
T 3k26_A           71 NFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAIN-ELKFHPRDPNLLLSVSKDHALRLWNIQTDT  149 (366)
T ss_dssp             CEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCSCEE-EEEECSSCTTEEEEEETTSCEEEEETTTTE
T ss_pred             cEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecCCCCcEE-EEEECCCCCCEEEEEeCCCeEEEEEeecCe
Confidence            3567888887    43 5577799999999963 543 33333444556 899998 88877776666767665  455 


Q ss_pred             -ceEEecccCCccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCe
Q 026389          147 -VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNE  209 (239)
Q Consensus       147 -~~~l~~~~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~  209 (239)
                       ...+.. ..+. -.....++++++|..+++-..                 .|.|..||..+++
T Consensus       150 ~~~~~~~-~~~~-~~~v~~~~~~~~~~~l~~~~~-----------------dg~i~i~d~~~~~  194 (366)
T 3k26_A          150 LVAIFGG-VEGH-RDEVLSADYDLLGEKIMSCGM-----------------DHSLKLWRINSKR  194 (366)
T ss_dssp             EEEEECS-TTSC-SSCEEEEEECTTSSEEEEEET-----------------TSCEEEEESCSHH
T ss_pred             EEEEecc-cccc-cCceeEEEECCCCCEEEEecC-----------------CCCEEEEECCCCc
Confidence             233311 1111 134788999999976666543                 4677778776543

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=97.26  E-value=0.0053  Score=53.36  Aligned_cols=130  Identities=10%  Similarity=0.115  Sum_probs=77.4

Q ss_pred             CCCEEEE-eCCCeEEEEecCCcEEEeeeccCcCccCeEEcCC----C----CEEEEeCC--CCeEEE---cc-CC-ceEE
Q 026389           87 NGVLYTA-TRDGWIKRLHKNGTWENWKLIGGDTLLGITTTQE----N----EILVCDAD--KGLLKV---TE-EG-VTVL  150 (239)
Q Consensus        87 ~G~ly~~-~~~g~I~~~~~~G~~~~~~~~~~~p~~Gl~~d~~----G----~L~v~d~~--~g~~~v---~~-~g-~~~l  150 (239)
                      ...++++ ++.+.++.||.+|+...+.. .++++ ++.+-++    |    .+|+++..  .+.+.+   ++ .+ ++.+
T Consensus        39 ~~s~ii~t~k~~gL~Vydl~G~~l~~~~-~g~~n-nVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~i  116 (355)
T 3amr_A           39 QNSKLITTNKKSGLVVYSLDGKMLHSYN-TGKLN-NVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSM  116 (355)
T ss_dssp             GGCEEEEEETTTEEEEEETTSCEEEEEC-CSCEE-EEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEEC
T ss_pred             CccEEEEEcCCCCEEEEcCCCcEEEEcc-CCCcc-cEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceeec
Confidence            3455654 47888999999888654433 36777 7666431    2    25778876  555544   32 33 3333


Q ss_pred             ecc--cCCccccccccEEE--cCC-CC--EEEEeCCCCcCcccccccceeecCCceEEEEeC---CCCe-----EEEecC
Q 026389          151 ASH--VNGSRINLADDLIA--ATD-GS--IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDP---SLNE-----TSILLD  215 (239)
Q Consensus       151 ~~~--~~g~~~~~pn~l~v--d~d-G~--iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~---~~~~-----~~~~~~  215 (239)
                      ...  .-+..+..|.|++.  +++ |.  +|+++..                  |++..|+.   ..++     ++.+ .
T Consensus       117 ~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~------------------G~~~q~~l~~~~~g~~~~~lVR~f-~  177 (355)
T 3amr_A          117 TDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKE------------------GEFEQYELKADKNGYISGKKVRAF-K  177 (355)
T ss_dssp             SCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSS------------------SEEEEEEEEECTTSCEEEEEEEEE-E
T ss_pred             cccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCC------------------CeEEEEEEEeCCCCcccceEEEEe-c
Confidence            221  00133467999999  775 54  5666543                  45544332   2221     2222 2


Q ss_pred             CCCCcceEEEcCCCCEEEEEeC
Q 026389          216 SLFFANGVALSKDEDYLVVCET  237 (239)
Q Consensus       216 ~l~~pnGia~s~dg~~lyvadt  237 (239)
                      --..|.|++++++..+|||+|=
T Consensus       178 lgsq~EgcvvDd~~g~Lyv~eE  199 (355)
T 3amr_A          178 MNSQTEGMAADDEYGRLYIAEE  199 (355)
T ss_dssp             CSSCEEEEEEETTTTEEEEEET
T ss_pred             CCCCcceEEEcCCCCeEEEecc
Confidence            2357899999999999999984

>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}

Probab=97.23  E-value=0.00064  Score=63.16  Aligned_cols=79  Identities=13%  Similarity=0.293  Sum_probs=49.4

Q ss_pred             ccccccccEEEcC-CCCEEEEeCCCCcCccc-cc---ccceeecCCceEEEEeCCCCe-------EEEec----------
Q 026389          157 SRINLADDLIAAT-DGSIYFSVASTKFGLHN-WG---LDLLEAKPHGKLLKYDPSLNE-------TSILL----------  214 (239)
Q Consensus       157 ~~~~~pn~l~vd~-dG~iy~td~~~~~~~~~-~~---~~~~e~~~~g~v~~~d~~~~~-------~~~~~----------  214 (239)
                      .++..|.|+++++ +|.+||+-.+......+ ..   -........|+|++|+++.+.       .+.++          
T Consensus       381 T~f~RpEgi~~~p~~g~vY~a~Tn~~~rg~~~~~~~~~np~~~n~~G~I~r~~~~~~d~~a~~f~w~~~v~~g~p~~~~~  460 (592)
T 3zwu_A          381 TRMDRPEWIVVSPKDGQVYCTLTNNAKRGEDGQPVGGPNPREKNVYGQILRWRTDRDDHASKTFAWDLFVVAGNPSVHAG  460 (592)
T ss_dssp             CCEECEEEEEECTTTCCEEEEECCBTTTTSTTCCCBTTBCCSSBSSCEEEEEEEGGGCTTCSEEEEEEEEECCCTTTSTT
T ss_pred             EEEeccceeEEcCCCCEEEEEecCCcccccCcccccccccccCCcceeEEEEecCCCccccceeEEEEEEeccCcccccc
Confidence            4788999999997 68999997653211110 00   011123356999999865331       12221          


Q ss_pred             ------------CCCCCcceEEEcCCCCEEEEEe
Q 026389          215 ------------DSLFFANGVALSKDEDYLVVCE  236 (239)
Q Consensus       215 ------------~~l~~pnGia~s~dg~~lyvad  236 (239)
                                  ..+..|.+|+|+++|+ |||+|
T Consensus       461 ~~~~~~~~~~~~~~f~~PDNL~fd~~G~-LwI~e  493 (592)
T 3zwu_A          461 TPKGGSSNITPQNMFNSPDGLGFDKAGR-LWILT  493 (592)
T ss_dssp             SGGGCCTTCCTTTCCCCEEEEEECTTCC-EEEEE
T ss_pred             cccccccccCCCCCccCCcceEECCCCC-EEEEe
Confidence                        1266899999999999 56554

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=97.22  E-value=0.016  Score=50.32  Aligned_cols=148  Identities=14%  Similarity=0.158  Sum_probs=88.1

Q ss_pred             EeccCCcCCcceEEEcC-CCCEE-EEeCCCeEEEEecC----Cc----EEEeeeccCcCccCeEEcCCCCEEEEeCCCCe
Q 026389           70 RLGEGILNGPEDVCVDR-NGVLY-TATRDGWIKRLHKN----GT----WENWKLIGGDTLLGITTTQENEILVCDADKGL  139 (239)
Q Consensus        70 ~l~~g~~~gPe~ia~d~-~G~ly-~~~~~g~I~~~~~~----G~----~~~~~~~~~~p~~Gl~~d~~G~L~v~d~~~g~  139 (239)
                      .+..+--..-.++++.+ +|.++ +++.||.|..|+..    +.    ...+ ....... .+++.++++++++-...|.
T Consensus        57 ~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-~h~~~v~-~~~~~~~~~~l~s~s~dg~  134 (437)
T 3gre_A           57 TLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY-DCSSTVT-QITMIPNFDAFAVSSKDGQ  134 (437)
T ss_dssp             EECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE-ECSSCEE-EEEECTTSSEEEEEETTSE
T ss_pred             eeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeec-cCCCCEE-EEEEeCCCCEEEEEeCCCE
Confidence            33333234567899999 88655 66799999999852    22    1221 2344556 8999999987766656676


Q ss_pred             EEEc--c---CC--ceEEecc-cCCc------cccccccEE--EcCCCCEEEEeCCCCcCcccccccceeecCCceEEEE
Q 026389          140 LKVT--E---EG--VTVLASH-VNGS------RINLADDLI--AATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKY  203 (239)
Q Consensus       140 ~~v~--~---~g--~~~l~~~-~~g~------~~~~pn~l~--vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~  203 (239)
                      +++.  .   .|  ...+... ....      .-.....+.  ..++|.++++...                 .|.|..|
T Consensus       135 i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----------------d~~i~iw  197 (437)
T 3gre_A          135 IIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTN-----------------LSRVIIF  197 (437)
T ss_dssp             EEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEET-----------------TSEEEEE
T ss_pred             EEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeC-----------------CCeEEEE
Confidence            6654  1   33  2211100 0000      011223333  4456665555433                 5899999


Q ss_pred             eCCCCeEEEecCC---CCCcceEEEcCCCCEEEEEe
Q 026389          204 DPSLNETSILLDS---LFFANGVALSKDEDYLVVCE  236 (239)
Q Consensus       204 d~~~~~~~~~~~~---l~~pnGia~s~dg~~lyvad  236 (239)
                      |..+++......+   -...+.++|+|++++|+++.
T Consensus       198 d~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~  233 (437)
T 3gre_A          198 DIRTLERLQIIENSPRHGAVSSICIDEECCVLILGT  233 (437)
T ss_dssp             ETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEE
T ss_pred             eCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEc
Confidence            9987765444432   35678999999999887654

>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}

Probab=97.21  E-value=0.0076  Score=52.46  Aligned_cols=140  Identities=14%  Similarity=0.162  Sum_probs=81.2

Q ss_pred             CcceEEEcC--CCCEEEEeCCC----eEEEEecCCc-EEEeeecc--------------CcCccCeEEcC---CCCEEEE
Q 026389           78 GPEDVCVDR--NGVLYTATRDG----WIKRLHKNGT-WENWKLIG--------------GDTLLGITTTQ---ENEILVC  133 (239)
Q Consensus        78 gPe~ia~d~--~G~ly~~~~~g----~I~~~~~~G~-~~~~~~~~--------------~~p~~Gl~~d~---~G~L~v~  133 (239)
                      .-.+|++|+  +++||++...|    .|++.+..|+ ++......              .+.. .|++++   .++||+.
T Consensus        56 ~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s~D~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~-~l~~~~~~~~~~l~~g  134 (394)
T 3b7f_A           56 TIHHIVQDPREPERMLMAARTGHLGPTVFRSDDGGGNWTEATRPPAFNKAPEGETGRVVDHVF-WLTPGHASEPGTWYAG  134 (394)
T ss_dssp             EEEEEEECSSSTTCEEEEEEC--CCEEEEEESSTTSCCEECSBCCCCCCCC----CCCCCEEE-EEEECCTTSTTCEEEE
T ss_pred             ceEEEEECCCCCCeEEEEecCCCCCccEEEeCCCCCCceECCccccCCCccccccccccccee-EEEeCCCCCCCEEEEE
Confidence            456899998  78999988666    7888765553 44432210              0223 477874   5789998


Q ss_pred             eCCCCeEEEccCC--ceEEecccC--------------CccccccccEEEcC--CCCEEEEeCCCCcCcccccccceeec
Q 026389          134 DADKGLLKVTEEG--VTVLASHVN--------------GSRINLADDLIAAT--DGSIYFSVASTKFGLHNWGLDLLEAK  195 (239)
Q Consensus       134 d~~~g~~~v~~~g--~~~l~~~~~--------------g~~~~~pn~l~vd~--dG~iy~td~~~~~~~~~~~~~~~e~~  195 (239)
                      ....++++.+..|  -+.+.....              +........|.+++  +++||++...                
T Consensus       135 ~~~ggl~~S~DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~vg~~~----------------  198 (394)
T 3b7f_A          135 TSPQGLFRSTDHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYIGMSS----------------  198 (394)
T ss_dssp             EETTEEEEESSTTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEEEEET----------------
T ss_pred             ecCCcEEEEcCCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEEEECC----------------
Confidence            7666777776655  333321100              11112345788987  3689988633                


Q ss_pred             CCceEEEEeCCCCeEEEecCCC-------------CCcceEEEcCC-CCEEEEEe
Q 026389          196 PHGKLLKYDPSLNETSILLDSL-------------FFANGVALSKD-EDYLVVCE  236 (239)
Q Consensus       196 ~~g~v~~~d~~~~~~~~~~~~l-------------~~pnGia~s~d-g~~lyvad  236 (239)
                        +.|++.+-.++..+.+..++             .....|+++++ .+.||+..
T Consensus       199 --ggl~~s~DgG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~  251 (394)
T 3b7f_A          199 --GGVFESTDAGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQN  251 (394)
T ss_dssp             --BEEEEESSTTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEE
T ss_pred             --CCEEEECCCCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEc
Confidence              45777765544444443221             11345777764 35677653

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=97.21  E-value=0.00072  Score=57.73  Aligned_cols=147  Identities=14%  Similarity=0.103  Sum_probs=76.2

Q ss_pred             cceEEEcCCCCE-EEE-eC--CCeEEEEecCC-cEEEeeeccCcCccCeEEcCCCC-EEEEeCCCCeEEEc-cCC-ceEE
Q 026389           79 PEDVCVDRNGVL-YTA-TR--DGWIKRLHKNG-TWENWKLIGGDTLLGITTTQENE-ILVCDADKGLLKVT-EEG-VTVL  150 (239)
Q Consensus        79 Pe~ia~d~~G~l-y~~-~~--~g~I~~~~~~G-~~~~~~~~~~~p~~Gl~~d~~G~-L~v~d~~~g~~~v~-~~g-~~~l  150 (239)
                      ..+++|+|||+. ++. ..  +..|+.++.++ +...+.........++.+.+||+ |+.+.....++.++ ..| .+.+
T Consensus        38 ~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~  117 (396)
T 3c5m_A           38 FYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEEQVI  117 (396)
T ss_dssp             TTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCEEEE
T ss_pred             eecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCCCEEEEEEcCCcEEEEECCCCCcEEE
Confidence            456689999864 333 33  34788888654 44443333333331478899996 54555444566667 345 4444


Q ss_pred             ecccCCccccccccEEEcCCC-CEEEEeCC---------CCcCcccccccce---eecCCceEEEEeCCCCeEEEecCCC
Q 026389          151 ASHVNGSRINLADDLIAATDG-SIYFSVAS---------TKFGLHNWGLDLL---EAKPHGKLLKYDPSLNETSILLDSL  217 (239)
Q Consensus       151 ~~~~~g~~~~~pn~l~vd~dG-~iy~td~~---------~~~~~~~~~~~~~---e~~~~g~v~~~d~~~~~~~~~~~~l  217 (239)
                      .....+          ..++| .|+++...         ..+....-...+.   .......|+++|.++++.+.+....
T Consensus       118 ~~~~~~----------~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~~~~  187 (396)
T 3c5m_A          118 YTVDEE----------WKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIHQDT  187 (396)
T ss_dssp             EECCTT----------EEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEEEES
T ss_pred             Eecccc----------cCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeeccCC
Confidence            321111          11122 11111000         0000000000000   0123568999999988887776555


Q ss_pred             CCcceEEEcC-CCCEEEEE
Q 026389          218 FFANGVALSK-DEDYLVVC  235 (239)
Q Consensus       218 ~~pnGia~s~-dg~~lyva  235 (239)
                      .....++++| ||+.|++.
T Consensus       188 ~~~~~~~~sp~dg~~l~~~  206 (396)
T 3c5m_A          188 AWLGHPIYRPFDDSTVGFC  206 (396)
T ss_dssp             SCEEEEEEETTEEEEEEEE
T ss_pred             cccccceECCCCCCEEEEE
Confidence            5667889999 78755443

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=97.18  E-value=0.0061  Score=52.23  Aligned_cols=100  Identities=11%  Similarity=0.159  Sum_probs=62.7

Q ss_pred             CCCEEEEeCCCeEEEEec-CCcEEEeeeccCcCc------------cCeEEcCCCCEEEEeCCCCeEEEc-cCCceEEec
Q 026389           87 NGVLYTATRDGWIKRLHK-NGTWENWKLIGGDTL------------LGITTTQENEILVCDADKGLLKVT-EEGVTVLAS  152 (239)
Q Consensus        87 ~G~ly~~~~~g~I~~~~~-~G~~~~~~~~~~~p~------------~Gl~~d~~G~L~v~d~~~g~~~v~-~~g~~~l~~  152 (239)
                      +|.+|++..++.|+.++. +|+.. |......|.            ....+ .+|.+|++....+++.++ .+|......
T Consensus       188 ~~~v~~g~~~g~l~~~d~~tG~~~-w~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~v~~~~~~g~l~~~d~~tG~~~w~~  265 (376)
T 3q7m_A          188 FGAAVVGGDNGRVSAVLMEQGQMI-WQQRISQATGSTEIDRLSDVDTTPVV-VNGVVFALAYNGNLTALDLRSGQIMWKR  265 (376)
T ss_dssp             TTEEEECCTTTEEEEEETTTCCEE-EEEECCC-----------CCCCCCEE-ETTEEEEECTTSCEEEEETTTCCEEEEE
T ss_pred             CCEEEEEcCCCEEEEEECCCCcEE-EEEecccCCCCcccccccccCCCcEE-ECCEEEEEecCcEEEEEECCCCcEEeec
Confidence            678999888999999996 56542 322211111            01222 367899998777888888 577222221


Q ss_pred             ccCCccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEE
Q 026389          153 HVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSI  212 (239)
Q Consensus       153 ~~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~  212 (239)
                      ...     ....+.++ ++++|+++..                  |.|+.+|+++++..-
T Consensus       266 ~~~-----~~~~~~~~-~~~l~~~~~~------------------g~l~~~d~~tG~~~w  301 (376)
T 3q7m_A          266 ELG-----SVNDFIVD-GNRIYLVDQN------------------DRVMALTIDGGVTLW  301 (376)
T ss_dssp             CCC-----CEEEEEEE-TTEEEEEETT------------------CCEEEEETTTCCEEE
T ss_pred             cCC-----CCCCceEE-CCEEEEEcCC------------------CeEEEEECCCCcEEE
Confidence            111     23445554 6799998753                  689999988887643

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=97.18  E-value=0.0078  Score=56.69  Aligned_cols=109  Identities=14%  Similarity=0.280  Sum_probs=65.8

Q ss_pred             CCCEEEEeCCCeEEEEec-CCcEEEeeeccC-------------cCccCeEEcCCCCEEEEeCCCCeEEEc-cCC-ceEE
Q 026389           87 NGVLYTATRDGWIKRLHK-NGTWENWKLIGG-------------DTLLGITTTQENEILVCDADKGLLKVT-EEG-VTVL  150 (239)
Q Consensus        87 ~G~ly~~~~~g~I~~~~~-~G~~~~~~~~~~-------------~p~~Gl~~d~~G~L~v~d~~~g~~~v~-~~g-~~~l  150 (239)
                      +|.||+++.+++|+.+|. +|+. .|.....             ... +++++ +++||+......++.+| .+| ...-
T Consensus        77 ~g~vyv~~~~~~v~AlD~~tG~~-~W~~~~~~~~~~~~~~~~~~~~~-~~a~~-~~~v~v~~~dg~l~alD~~tG~~~W~  153 (677)
T 1kb0_A           77 DGIMYVSASWSVVHAIDTRTGNR-IWTYDPQIDRSTGFKGCCDVVNR-GVALW-KGKVYVGAWDGRLIALDAATGKEVWH  153 (677)
T ss_dssp             TTEEEEECGGGCEEEEETTTTEE-EEEECCCCCGGGGGGSSSCSCCC-CCEEE-TTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred             CCEEEEECCCCeEEEEECCCCcE-EEEEcCCCCccccccccccCCCC-CceEE-CCEEEEEcCCCEEEEEECCCCCEEee
Confidence            789999998999999996 5653 3332211             123 66664 67899998777788898 578 3322


Q ss_pred             eccc-CCcc-ccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEE
Q 026389          151 ASHV-NGSR-INLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETS  211 (239)
Q Consensus       151 ~~~~-~g~~-~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~  211 (239)
                      .... +... ........++ +|.+|++.....++            ..|.|+.||..+|++.
T Consensus       154 ~~~~~~~~~~~~~~~~p~v~-~~~v~v~~~~~~~~------------~~g~v~a~D~~tG~~~  203 (677)
T 1kb0_A          154 QNTFEGQKGSLTITGAPRVF-KGKVIIGNGGAEYG------------VRGYITAYDAETGERK  203 (677)
T ss_dssp             EETTTTCCSSCBCCSCCEEE-TTEEEECCBCTTTC------------CBCEEEEEETTTCCEE
T ss_pred             ecCCcCcCcCcccccCcEEE-CCEEEEEecccccC------------CCCEEEEEECCCCcEE
Confidence            2211 1000 0111122333 67889876542211            2478999999888764

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=97.14  E-value=0.0089  Score=51.94  Aligned_cols=137  Identities=11%  Similarity=0.062  Sum_probs=78.3

Q ss_pred             CcceEEEcCCCC-EEEEeCCCeEEEEec----CCcEEEeee-------------ccCcCccCeE--EcCCCCEEEEeCCC
Q 026389           78 GPEDVCVDRNGV-LYTATRDGWIKRLHK----NGTWENWKL-------------IGGDTLLGIT--TTQENEILVCDADK  137 (239)
Q Consensus        78 gPe~ia~d~~G~-ly~~~~~g~I~~~~~----~G~~~~~~~-------------~~~~p~~Gl~--~d~~G~L~v~d~~~  137 (239)
                      .-.+++|.+++. |++++.+|.|..|+.    +|+......             ...... .+.  +.++++++++-...
T Consensus       113 ~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~d  191 (437)
T 3gre_A          113 TVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAV-RMRAFVNEEKSLLVALTNL  191 (437)
T ss_dssp             CEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEE-EEEEEECSSCEEEEEEETT
T ss_pred             CEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCce-EEEEEEcCCCCEEEEEeCC
Confidence            456789999876 456779999988875    343221111             111222 333  34677766666566


Q ss_pred             CeEEEc--cCC--ceEEecccCCccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEe
Q 026389          138 GLLKVT--EEG--VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSIL  213 (239)
Q Consensus       138 g~~~v~--~~g--~~~l~~~~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~  213 (239)
                      +.+++.  ..+  ...+....   .....+.++++++|...++.+.                 .|.|..||..+++....
T Consensus       192 ~~i~iwd~~~~~~~~~~~~~~---h~~~v~~~~~s~~~~~l~s~~~-----------------dg~i~iwd~~~~~~~~~  251 (437)
T 3gre_A          192 SRVIIFDIRTLERLQIIENSP---RHGAVSSICIDEECCVLILGTT-----------------RGIIDIWDIRFNVLIRS  251 (437)
T ss_dssp             SEEEEEETTTCCEEEEEECCG---GGCCEEEEEECTTSCEEEEEET-----------------TSCEEEEETTTTEEEEE
T ss_pred             CeEEEEeCCCCeeeEEEccCC---CCCceEEEEECCCCCEEEEEcC-----------------CCeEEEEEcCCccEEEE
Confidence            777665  344  33332210   1135789999999987776544                 47888899877665433


Q ss_pred             c--CCCCCcceEEEc----CCCCEEEEE
Q 026389          214 L--DSLFFANGVALS----KDEDYLVVC  235 (239)
Q Consensus       214 ~--~~l~~pnGia~s----~dg~~lyva  235 (239)
                      .  ..-...+.++++    +|+++|+.+
T Consensus       252 ~~~~~~~~v~~~~~~~~~s~~~~~l~s~  279 (437)
T 3gre_A          252 WSFGDHAPITHVEVCQFYGKNSVIVVGG  279 (437)
T ss_dssp             EBCTTCEEEEEEEECTTTCTTEEEEEEE
T ss_pred             EecCCCCceEEEEeccccCCCccEEEEE
Confidence            2  222234556443    455555443

>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}

Probab=97.09  E-value=0.012  Score=51.16  Aligned_cols=135  Identities=13%  Similarity=0.116  Sum_probs=78.4

Q ss_pred             eEEEcC---CCCEEEEeCCCeEEEEecCCc-EEEeeec---c----------------CcCccCeEEcC--CCCEEEEeC
Q 026389           81 DVCVDR---NGVLYTATRDGWIKRLHKNGT-WENWKLI---G----------------GDTLLGITTTQ--ENEILVCDA  135 (239)
Q Consensus        81 ~ia~d~---~G~ly~~~~~g~I~~~~~~G~-~~~~~~~---~----------------~~p~~Gl~~d~--~G~L~v~d~  135 (239)
                      +|++++   .+.||++...+.|+|.+..|+ ++.+...   .                ..-. .|++|+  .++||++..
T Consensus       119 ~l~~~~~~~~~~l~~g~~~ggl~~S~DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~-~i~~d~~~~~~l~vg~~  197 (394)
T 3b7f_A          119 WLTPGHASEPGTWYAGTSPQGLFRSTDHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMH-SILVDPRDPKHLYIGMS  197 (394)
T ss_dssp             EEEECCTTSTTCEEEEEETTEEEEESSTTSBCEECHHHHTCTTHHHHHCCC----CCCCEEE-EEEECTTCTTCEEEEEE
T ss_pred             EEEeCCCCCCCEEEEEecCCcEEEEcCCCCCeEECcCccCCccccccccccccCCCCCCcee-EEEECCCCCCEEEEEEC
Confidence            478885   689999888889999875554 5543211   0                1124 678885  357999876


Q ss_pred             CCCeEEEccCC--ceEEecccCCc--c------ccccccEEEcCC--CCEEEEeCCCCcCcccccccceeecCCceEEEE
Q 026389          136 DKGLLKVTEEG--VTVLASHVNGS--R------INLADDLIAATD--GSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKY  203 (239)
Q Consensus       136 ~~g~~~v~~~g--~~~l~~~~~g~--~------~~~pn~l~vd~d--G~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~  203 (239)
                      ..++++.++.|  -+.+.......  +      -.....++++++  +.||++..                   +.|++.
T Consensus       198 ~ggl~~s~DgG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~-------------------~gl~~s  258 (394)
T 3b7f_A          198 SGGVFESTDAGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNH-------------------CGIYRM  258 (394)
T ss_dssp             TBEEEEESSTTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEET-------------------TEEEEE
T ss_pred             CCCEEEECCCCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcC-------------------CeEEEe
Confidence            55666665555  33332111110  0      023567889986  78898752                   357777


Q ss_pred             eCCCCeEEEecCCCCC-----cceEEEcC-CCCEEEEE
Q 026389          204 DPSLNETSILLDSLFF-----ANGVALSK-DEDYLVVC  235 (239)
Q Consensus       204 d~~~~~~~~~~~~l~~-----pnGia~s~-dg~~lyva  235 (239)
                      +..++..+.+...+..     ...|+++| +...||+.
T Consensus       259 ~D~G~tW~~~~~~l~~~~~~~~~~i~~~p~~~~~l~~~  296 (394)
T 3b7f_A          259 DRREGVWKRIGDAMPREVGDIGFPIVVHQRDPRTVWVF  296 (394)
T ss_dssp             ETTTTEEECGGGGSCTTTCSCEEEEEECSSCTTCEEEE
T ss_pred             CCCCCcceECCCCCCCCCccceEEEEECCCCCCEEEEE
Confidence            7555555544433322     23456654 34456664

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=97.08  E-value=0.006  Score=49.74  Aligned_cols=107  Identities=15%  Similarity=0.162  Sum_probs=61.8

Q ss_pred             ceEeccCCcCCcceEEEcCCCCEEEEeCCCeEEEEec--CCc--E----EEeeecc-CcCccCeEEcCCCCEEEEeCCCC
Q 026389           68 VTRLGEGILNGPEDVCVDRNGVLYTATRDGWIKRLHK--NGT--W----ENWKLIG-GDTLLGITTTQENEILVCDADKG  138 (239)
Q Consensus        68 ~~~l~~g~~~gPe~ia~d~~G~ly~~~~~g~I~~~~~--~G~--~----~~~~~~~-~~p~~Gl~~d~~G~L~v~d~~~g  138 (239)
                      ..+|..+-..+=..+.+|++|.||.+ .+|+|+|+++  ++.  |    ..+...+ ..-. -|.++++|.||... ...
T Consensus        79 ~t~IG~~Gw~~F~a~~fD~~G~LYav-~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~-~lff~p~G~Lyav~-dg~  155 (236)
T 1tl2_A           79 AKKIGNGGWNQFQFLFFDPNGYLYAV-SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFK-FLFFHPNGYLYAVH-GQQ  155 (236)
T ss_dssp             CEEEECSCGGGCSEEEECTTSCEEEE-ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEE-EEEECTTSCEEEEE-TTE
T ss_pred             ccEecccccccceEEEECCCCCEEEe-CCCEEEEeCCCcCCCCceeccccEeccCCCCceE-EEEECCCceEEEEe-CCc
Confidence            34454432333467899999999988 6799999996  332  1    2221111 1234 68899999999998 444


Q ss_pred             eEEEc-cCC--ceEEec--ccCCccccccccEEEcCCCCEEEEe
Q 026389          139 LLKVT-EEG--VTVLAS--HVNGSRINLADDLIAATDGSIYFSV  177 (239)
Q Consensus       139 ~~~v~-~~g--~~~l~~--~~~g~~~~~pn~l~vd~dG~iy~td  177 (239)
                      +++-. +.+  ...+..  .......+.-.-+.++++|+||..+
T Consensus       156 lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G~l~~v~  199 (236)
T 1tl2_A          156 FYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVGTLFGVQ  199 (236)
T ss_dssp             EEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTSCEEEEE
T ss_pred             EEecCCCCCCCcccccccceeccCCcceEEEEEECCCCcEEEEe
Confidence            55544 422  222110  0000011111226789999999887

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=97.05  E-value=0.01  Score=56.29  Aligned_cols=130  Identities=20%  Similarity=0.176  Sum_probs=79.6

Q ss_pred             CcceEEEcCCCC-EEEEeCCCeEEEEecCC-cEE---EeeeccCcCccCeEEcCC--CCEEEEeCCCCeEEEc--cCC-c
Q 026389           78 GPEDVCVDRNGV-LYTATRDGWIKRLHKNG-TWE---NWKLIGGDTLLGITTTQE--NEILVCDADKGLLKVT--EEG-V  147 (239)
Q Consensus        78 gPe~ia~d~~G~-ly~~~~~g~I~~~~~~G-~~~---~~~~~~~~p~~Gl~~d~~--G~L~v~d~~~g~~~v~--~~g-~  147 (239)
                      .-.+++|+++|. |++++.+|.|..|+.++ +..   .+....+... .+++.++  |+++++-...|.+++.  .++ .
T Consensus        11 ~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~-~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~   89 (753)
T 3jro_A           11 LIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVW-RVDWAHPKFGTILASCSYDGKVLIWKEENGRW   89 (753)
T ss_dssp             CEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEE-EEEECCTTSCSEEEEEETTSCEEEEEEETTEE
T ss_pred             eeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceE-EEEecCCCCCCEEEEEeCCCeEEEEECCCCcc
Confidence            455678888875 55777999999998642 222   2222233445 7888766  8777766666777765  344 2


Q ss_pred             eEEecccCCccccccccEEEcCC--CCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCe---EEEecCCCCCcce
Q 026389          148 TVLASHVNGSRINLADDLIAATD--GSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNE---TSILLDSLFFANG  222 (239)
Q Consensus       148 ~~l~~~~~g~~~~~pn~l~vd~d--G~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~---~~~~~~~l~~pnG  222 (239)
                      ..+... .+. -.....+++.++  |.++++...                 .|.|..||..++.   ...+...-.....
T Consensus        90 ~~~~~~-~~h-~~~V~~v~~sp~~~~~~l~sgs~-----------------dg~I~vwdl~~~~~~~~~~~~~~~~~v~~  150 (753)
T 3jro_A           90 SQIAVH-AVH-SASVNSVQWAPHEYGPLLLVASS-----------------DGKVSVVEFKENGTTSPIIIDAHAIGVNS  150 (753)
T ss_dssp             EEEEEE-CCC-SSCEEEEEECCGGGCSEEEEEET-----------------TSEEEEEECCSSSCCCCEEEECCSSCEEE
T ss_pred             cccccc-cCC-CCCeEEEEECCCCCCCEEEEEeC-----------------CCcEEEEEeecCCCcceeEeecCCCceEE
Confidence            222221 111 134678999998  877666544                 5788889876552   2223333345577


Q ss_pred             EEEcC
Q 026389          223 VALSK  227 (239)
Q Consensus       223 ia~s~  227 (239)
                      ++++|
T Consensus       151 l~~~p  155 (753)
T 3jro_A          151 ASWAP  155 (753)
T ss_dssp             EEECC
T ss_pred             EEecC
Confidence            88888

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=97.05  E-value=0.03  Score=48.99  Aligned_cols=127  Identities=13%  Similarity=0.097  Sum_probs=73.3

Q ss_pred             EcCCCC-EEEEeCCCeEEEEecC-CcE-EEeeeccCcCccCeEEcCCCCEEEEeCCCCeEEEc--cCC--ceEEecccCC
Q 026389           84 VDRNGV-LYTATRDGWIKRLHKN-GTW-ENWKLIGGDTLLGITTTQENEILVCDADKGLLKVT--EEG--VTVLASHVNG  156 (239)
Q Consensus        84 ~d~~G~-ly~~~~~g~I~~~~~~-G~~-~~~~~~~~~p~~Gl~~d~~G~L~v~d~~~g~~~v~--~~g--~~~l~~~~~g  156 (239)
                      +.+++. +++++.+|.|..||.. ++. ..+........ .++++++|+.+++....+.+++.  .++  ...+... . 
T Consensus       276 ~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h-~-  352 (464)
T 3v7d_B          276 VSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIY-STIYDHERKRCISASMDTTIRIWDLENGELMYTLQGH-T-  352 (464)
T ss_dssp             EEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEE-EEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECCC-S-
T ss_pred             EcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEE-EEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCC-C-
Confidence            344454 5577799999999963 432 33333334455 88999999877766666777765  455  3333211 1 


Q ss_pred             ccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecCCCCCcceEEEcCCCCEEEEE
Q 026389          157 SRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVC  235 (239)
Q Consensus       157 ~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~~l~~pnGia~s~dg~~lyva  235 (239)
                         .....+.++  +...++.+.                 .|.|..||..+++.......-.....+++++++++|..+
T Consensus       353 ---~~v~~~~~~--~~~l~s~s~-----------------dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  409 (464)
T 3v7d_B          353 ---ALVGLLRLS--DKFLVSAAA-----------------DGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSG  409 (464)
T ss_dssp             ---SCEEEEEEC--SSEEEEEET-----------------TSEEEEEETTTCCEEEEEECTTCCCEEEEEECSSEEEEE
T ss_pred             ---CcEEEEEEc--CCEEEEEeC-----------------CCcEEEEECCCCceeeeecCCCCccEEEEEeCCCEEEEe
Confidence               124455554  444444332                 467777777665543333333345566777777766554

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=96.99  E-value=0.018  Score=49.10  Aligned_cols=93  Identities=17%  Similarity=0.101  Sum_probs=58.3

Q ss_pred             eCCCeEEEEecCC-c-----------------EEEeeeccCcCccCeEEcCCCCEEEEeCCCCe-EEEc--cCC--ceEE
Q 026389           94 TRDGWIKRLHKNG-T-----------------WENWKLIGGDTLLGITTTQENEILVCDADKGL-LKVT--EEG--VTVL  150 (239)
Q Consensus        94 ~~~g~I~~~~~~G-~-----------------~~~~~~~~~~p~~Gl~~d~~G~L~v~d~~~g~-~~v~--~~g--~~~l  150 (239)
                      ..+|.|..||... +                 ...+....+... .++++++|+++++-...+. +++.  .++  ...+
T Consensus       156 ~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~-~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~  234 (355)
T 3vu4_A          156 FNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIK-MVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREF  234 (355)
T ss_dssp             SCTTCEEEEECCC------------------CCEEECCCSSCEE-EEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEE
T ss_pred             CcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceE-EEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEE
Confidence            4678888887532 2                 233333334455 8999999998887766775 7775  455  3333


Q ss_pred             ecccCCccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCC
Q 026389          151 ASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSL  207 (239)
Q Consensus       151 ~~~~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~  207 (239)
                      ..   |..-...+.+++++||+..++.+.                 .|.|..||...
T Consensus       235 ~~---g~h~~~v~~~~~s~~~~~l~s~s~-----------------d~~v~iw~~~~  271 (355)
T 3vu4_A          235 RR---GLDRADVVDMKWSTDGSKLAVVSD-----------------KWTLHVFEIFN  271 (355)
T ss_dssp             EC---TTCCSCEEEEEECTTSCEEEEEET-----------------TCEEEEEESSC
T ss_pred             Ec---CCCCCcEEEEEECCCCCEEEEEEC-----------------CCEEEEEEccC
Confidence            21   101134688999999987777654                 46677777643

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=96.98  E-value=0.014  Score=49.00  Aligned_cols=127  Identities=9%  Similarity=-0.039  Sum_probs=70.6

Q ss_pred             CCeEEEEecCC-cEEEeeeccCcCccCeEEcCCCC-EEEEeCCC--C---eEEEc-cCC-ceEEecccCCccccccccEE
Q 026389           96 DGWIKRLHKNG-TWENWKLIGGDTLLGITTTQENE-ILVCDADK--G---LLKVT-EEG-VTVLASHVNGSRINLADDLI  166 (239)
Q Consensus        96 ~g~I~~~~~~G-~~~~~~~~~~~p~~Gl~~d~~G~-L~v~d~~~--g---~~~v~-~~g-~~~l~~~~~g~~~~~pn~l~  166 (239)
                      ++.|+.++.++ +...+    .... .+++.+||+ |+.+....  +   ++.++ ..| ...+... .    . ...++
T Consensus        42 ~~~l~~~d~~~~~~~~l----~~~~-~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~-~----~-~~~~~  110 (347)
T 2gop_A           42 ENTIVIENLKNNARRFI----ENAT-MPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEA-K----N-IRSLE  110 (347)
T ss_dssp             EEEEEEEETTTCCEEEE----ESCE-EEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEE-S----E-EEEEE
T ss_pred             cceEEEEeCCCCceEEc----ccCC-CeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcC-C----C-cccee
Confidence            46788888654 44433    3455 789999996 44333211  2   45555 345 4444321 1    1 57889


Q ss_pred             EcCCC-CEEEEeCCCCcC-----ccc--cc--ccceeecCCceEEEEeCCCCeE-EEecCCCCCcceEEEcCCCCEEEEE
Q 026389          167 AATDG-SIYFSVASTKFG-----LHN--WG--LDLLEAKPHGKLLKYDPSLNET-SILLDSLFFANGVALSKDEDYLVVC  235 (239)
Q Consensus       167 vd~dG-~iy~td~~~~~~-----~~~--~~--~~~~e~~~~g~v~~~d~~~~~~-~~~~~~l~~pnGia~s~dg~~lyva  235 (239)
                      +.||| .|+++.....-.     ...  +.  ..-+......+|+++|.++++. +.+...  ....++++||| .+|++
T Consensus       111 wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~~--~~~~~~~spdg-~~~~~  187 (347)
T 2gop_A          111 WNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEKP--RFSSGIWHRDK-IVVNV  187 (347)
T ss_dssp             ECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEEEE--TTCEEEEETTE-EEEEE
T ss_pred             ECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecCC--CcccccCCCCe-EEEEE
Confidence            99999 477764210000     000  00  0000001246899999988887 555442  67889999999 77766


Q ss_pred             e
Q 026389          236 E  236 (239)
Q Consensus       236 d  236 (239)
                      .
T Consensus       188 ~  188 (347)
T 2gop_A          188 P  188 (347)
T ss_dssp             E
T ss_pred             e
Confidence            3

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=96.98  E-value=0.008  Score=50.42  Aligned_cols=135  Identities=8%  Similarity=0.021  Sum_probs=77.1

Q ss_pred             CcceEEEcCCCC-EEEEe-CC--C--eEEEEecC-CcEEEeeeccCcCccCeEEcCCCC-EEEEeCC-------------
Q 026389           78 GPEDVCVDRNGV-LYTAT-RD--G--WIKRLHKN-GTWENWKLIGGDTLLGITTTQENE-ILVCDAD-------------  136 (239)
Q Consensus        78 gPe~ia~d~~G~-ly~~~-~~--g--~I~~~~~~-G~~~~~~~~~~~p~~Gl~~d~~G~-L~v~d~~-------------  136 (239)
                      ....++|+|||+ |++.. ..  +  +|+.++.+ |+...+..... .. .+++.+||+ |+++...             
T Consensus        60 ~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~-~~-~~~wspdg~~l~~~~~~~~~~~~~~~~~~~  137 (347)
T 2gop_A           60 NATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAKN-IR-SLEWNEDSRKLLIVGFKRREDEDFIFEDDV  137 (347)
T ss_dssp             SCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEESE-EE-EEEECTTSSEEEEEEECCCC---------C
T ss_pred             cCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCCC-cc-ceeECCCCCEEEEEEccCCCcCCcEEEccc
Confidence            345679999985 44443 22  3  48888865 44444433333 66 889999996 5554311             


Q ss_pred             --------------CCeEEEc-cCC-c-eEEecccCCccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCce
Q 026389          137 --------------KGLLKVT-EEG-V-TVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGK  199 (239)
Q Consensus       137 --------------~g~~~v~-~~g-~-~~l~~~~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~  199 (239)
                                    ..++.++ ..| . +.+..     +  ....+++.+|| ++++.....-..        ...+..+
T Consensus       138 ~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-----~--~~~~~~~spdg-~~~~~~~~~~~~--------~~~~~~~  201 (347)
T 2gop_A          138 PAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-----P--RFSSGIWHRDK-IVVNVPHREIIP--------QYFKFWD  201 (347)
T ss_dssp             CCC---------CEEEEEEEETTTTEEEEEEEE-----E--TTCEEEEETTE-EEEEEECCCSSC--------CSSCCEE
T ss_pred             ceeecCcccccCccceEEEEECCCCeEEeeecC-----C--CcccccCCCCe-EEEEEecccccc--------ccccccc
Confidence                          2344455 345 4 44432     1  35688999999 777653210000        0001358


Q ss_pred             EEEEeCCCCeEEEecCCCCCcceEEEcCCCCEEEEE
Q 026389          200 LLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVC  235 (239)
Q Consensus       200 v~~~d~~~~~~~~~~~~l~~pnGia~s~dg~~lyva  235 (239)
                      |+.+|  +++.+.+..+ ...  ..++|||++|++.
T Consensus       202 l~~~d--~~~~~~l~~~-~~~--~~~spdg~~l~~~  232 (347)
T 2gop_A          202 IYIWE--DGKEEKMFEK-VSF--YAVDSDGERILLY  232 (347)
T ss_dssp             EEEEE--TTEEEEEEEE-ESE--EEEEECSSCEEEE
T ss_pred             EEEeC--CCceEEeccC-cce--eeECCCCCEEEEE
Confidence            99999  5777666554 222  2348899877654

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=96.97  E-value=0.034  Score=48.55  Aligned_cols=139  Identities=12%  Similarity=0.123  Sum_probs=80.0

Q ss_pred             CCcceEEEcCCCCEEEEeCCCeEEEEecC-CcE-EEeeeccCcCccCeEEc--CCCCEEEEeCCCCeEEEc--cCC--ce
Q 026389           77 NGPEDVCVDRNGVLYTATRDGWIKRLHKN-GTW-ENWKLIGGDTLLGITTT--QENEILVCDADKGLLKVT--EEG--VT  148 (239)
Q Consensus        77 ~gPe~ia~d~~G~ly~~~~~g~I~~~~~~-G~~-~~~~~~~~~p~~Gl~~d--~~G~L~v~d~~~g~~~v~--~~g--~~  148 (239)
                      ..-.++++.+++.+++++.+|.|..|+.+ ++. ..+........ .+++.  ++++++++....+.+++.  ..+  ..
T Consensus       163 ~~V~~l~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~v~-~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~  241 (464)
T 3v7d_B          163 GGVWALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVR-CLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVP  241 (464)
T ss_dssp             SCEEEEEECSTTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEE-EEEEEESSSCEEEEEEETTSCEEEEECCCCCCC-
T ss_pred             cCEEEEEEcCCCEEEEEeCCCCEEEEECCCCcEEEEECCCCCccE-EEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccc
Confidence            35567889888877788899999999964 443 33322333344 66766  566666655555666654  233  11


Q ss_pred             EEec-------------------ccCCccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCe
Q 026389          149 VLAS-------------------HVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNE  209 (239)
Q Consensus       149 ~l~~-------------------~~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~  209 (239)
                      ....                   ...+.   ...-..+.++|+..++..                 ..|.|..||..+++
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~v~~~~~~~~~l~~~~-----------------~d~~i~vwd~~~~~  301 (464)
T 3v7d_B          242 DHGEEHDYPLVFHTPEENPYFVGVLRGH---MASVRTVSGHGNIVVSGS-----------------YDNTLIVWDVAQMK  301 (464)
T ss_dssp             -----CCSSEEESCGGGCTTEEEEECCC---SSCEEEEEEETTEEEEEE-----------------TTSCEEEEETTTTE
T ss_pred             cccccCCcceEeeccCCCeEEEEEccCc---cceEEEEcCCCCEEEEEe-----------------CCCeEEEEECCCCc
Confidence            1100                   00110   001122344554444432                 35889999988776


Q ss_pred             EEEecC-CCCCcceEEEcCCCCEEEEEe
Q 026389          210 TSILLD-SLFFANGVALSKDEDYLVVCE  236 (239)
Q Consensus       210 ~~~~~~-~l~~pnGia~s~dg~~lyvad  236 (239)
                      ...... .-.....+++++++++++++.
T Consensus       302 ~~~~~~~~~~~v~~~~~~~~~~~l~sg~  329 (464)
T 3v7d_B          302 CLYILSGHTDRIYSTIYDHERKRCISAS  329 (464)
T ss_dssp             EEEEECCCSSCEEEEEEETTTTEEEEEE
T ss_pred             EEEEecCCCCCEEEEEEcCCCCEEEEEe
Confidence            554443 334567899999999887664

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=96.96  E-value=0.0014  Score=61.26  Aligned_cols=61  Identities=15%  Similarity=-0.059  Sum_probs=38.9

Q ss_pred             ccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEe----CCCCeEEEecC----CC-CCcc-----eEEEc
Q 026389          161 LADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYD----PSLNETSILLD----SL-FFAN-----GVALS  226 (239)
Q Consensus       161 ~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d----~~~~~~~~~~~----~l-~~pn-----Gia~s  226 (239)
                      ....+++.|||+++++....             .....+|+.+|    .++++...+..    +. ...+     .++|+
T Consensus       254 ~~~~~~~SpD~~~~~~~~~~-------------~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~s  320 (719)
T 1z68_A          254 YFSWLTWVTDERVCLQWLKR-------------VQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFS  320 (719)
T ss_dssp             EEEEEEESSSSEEEEEEEES-------------STTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEEC
T ss_pred             eEEEeEEeCCCeEEEEEecc-------------ccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEEC
Confidence            35688999999887763210             01135799999    87776554441    11 1122     78999


Q ss_pred             CCCCEEEE
Q 026389          227 KDEDYLVV  234 (239)
Q Consensus       227 ~dg~~lyv  234 (239)
                      |||+.+++
T Consensus       321 pdg~~l~~  328 (719)
T 1z68_A          321 YDAISYYK  328 (719)
T ss_dssp             TTSSCEEE
T ss_pred             CCCCeEEE
Confidence            99997766

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=96.88  E-value=0.022  Score=53.39  Aligned_cols=139  Identities=12%  Similarity=0.080  Sum_probs=76.5

Q ss_pred             ceEEEcCCCCEE-E-EeCCC----eEEEEecC-CcEEEeeeccCcCccCeEEcCCCC-EEEEeCCCC-------------
Q 026389           80 EDVCVDRNGVLY-T-ATRDG----WIKRLHKN-GTWENWKLIGGDTLLGITTTQENE-ILVCDADKG-------------  138 (239)
Q Consensus        80 e~ia~d~~G~ly-~-~~~~g----~I~~~~~~-G~~~~~~~~~~~p~~Gl~~d~~G~-L~v~d~~~g-------------  138 (239)
                      .+++|+|||+.. + .+..|    .|+.++.+ |+............ ++++.+||+ ||++.....             
T Consensus       128 ~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~~~~~-~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~  206 (710)
T 2xdw_A          128 RGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFS-CMAWTHDGKGMFYNAYPQQDGKSDGTETSTNL  206 (710)
T ss_dssp             EEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEECSC-CEEECTTSSEEEEEECCCCSSCCSSSCCCCCC
T ss_pred             EEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccCcccc-eEEEEeCCCEEEEEEECCccccccccccccCC
Confidence            467999999643 3 33333    78889864 44432222222345 799999995 555543322             


Q ss_pred             ---eEEEc-cCC-c--eEEecccCCccccccccEEEcCCCC-EEEEeCCCCcCcccccccceeecCCceEEEEeCCC---
Q 026389          139 ---LLKVT-EEG-V--TVLASHVNGSRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSL---  207 (239)
Q Consensus       139 ---~~~v~-~~g-~--~~l~~~~~g~~~~~pn~l~vd~dG~-iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~---  207 (239)
                         ++..+ ..+ .  .++....+. + .+..++.+++||+ |+++.... .            .....|+.+|.++   
T Consensus       207 ~~~v~~~~l~t~~~~~~~v~~~~~~-~-~~~~~~~~SpDg~~l~~~~~~~-~------------~~~~~l~~~d~~~~~~  271 (710)
T 2xdw_A          207 HQKLYYHVLGTDQSEDILCAEFPDE-P-KWMGGAELSDDGRYVLLSIREG-C------------DPVNRLWYCDLQQESN  271 (710)
T ss_dssp             CCEEEEEETTSCGGGCEEEECCTTC-T-TCEEEEEECTTSCEEEEEEECS-S------------SSCCEEEEEEGGGSSS
T ss_pred             CCEEEEEECCCCcccceEEeccCCC-C-eEEEEEEEcCCCCEEEEEEEcc-C------------CCccEEEEEECccccc
Confidence               44444 333 2  233222111 1 2345889999995 55554321 0            0135788888765   


Q ss_pred             ---C--eEEEecCCCCCcceEEEcCCCCEEEEE
Q 026389          208 ---N--ETSILLDSLFFANGVALSKDEDYLVVC  235 (239)
Q Consensus       208 ---~--~~~~~~~~l~~pnGia~s~dg~~lyva  235 (239)
                         +  +.+.+..... ...-.+++||+.||+.
T Consensus       272 ~~~~~~~~~~l~~~~~-~~~~~~s~dg~~l~~~  303 (710)
T 2xdw_A          272 GITGILKWVKLIDNFE-GEYDYVTNEGTVFTFK  303 (710)
T ss_dssp             SSCSSCCCEEEECSSS-SCEEEEEEETTEEEEE
T ss_pred             ccCCccceEEeeCCCC-cEEEEEeccCCEEEEE
Confidence               4  4555544322 2233578888888765

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=96.88  E-value=0.0094  Score=49.94  Aligned_cols=138  Identities=19%  Similarity=0.182  Sum_probs=77.4

Q ss_pred             CcceEEEcCC--CC-EEEEeCCCeEEEEecCC--cEEEeeec---cCcCccCeEEcCC-----------------CCEEE
Q 026389           78 GPEDVCVDRN--GV-LYTATRDGWIKRLHKNG--TWENWKLI---GGDTLLGITTTQE-----------------NEILV  132 (239)
Q Consensus        78 gPe~ia~d~~--G~-ly~~~~~g~I~~~~~~G--~~~~~~~~---~~~p~~Gl~~d~~-----------------G~L~v  132 (239)
                      .-.+++|.++  |. |.+++.|+.|..|+...  ++......   ...-. .+++.++                 +++++
T Consensus       105 ~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  183 (316)
T 3bg1_A          105 SVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCN-AVSWAPAVVPGSLIDHPSGQKPNYIKRFA  183 (316)
T ss_dssp             CCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBC-CCEECCCCCC------CCSCCCCCCCBEE
T ss_pred             ceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcc-eEEEccccCCccccccccccCccccceEE
Confidence            4567999986  64 55777999998888543  23221111   12233 5666665                 34555


Q ss_pred             EeCCCCeEEEc--cCC--ceEEecccCCccccccccEEEcCCC----CEEEEeCCCCcCcccccccceeecCCceEEEEe
Q 026389          133 CDADKGLLKVT--EEG--VTVLASHVNGSRINLADDLIAATDG----SIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYD  204 (239)
Q Consensus       133 ~d~~~g~~~v~--~~g--~~~l~~~~~g~~~~~pn~l~vd~dG----~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d  204 (239)
                      +-...+.+++.  ..+  .+.+. ...+.. ...+++++.|+|    .++++-+.                 .|.|..||
T Consensus       184 sgs~D~~v~lWd~~~~~~~~~~~-~l~~h~-~~V~~v~~sp~~~~~~~~las~s~-----------------D~~v~iw~  244 (316)
T 3bg1_A          184 SGGCDNLIKLWKEEEDGQWKEEQ-KLEAHS-DWVRDVAWAPSIGLPTSTIASCSQ-----------------DGRVFIWT  244 (316)
T ss_dssp             CCBTTSBCCEEEECTTSCEEEEE-CCBCCS-SCEEEEECCCCSSCSCCEEEEEET-----------------TCEEEEEE
T ss_pred             EecCCCeEEEEEeCCCCccceee-ecccCC-CceEEEEecCCCCCCCceEEEEcC-----------------CCeEEEEE
Confidence            55555555554  222  12222 222211 346788999886    55665543                 57888888


Q ss_pred             CCCC---e--EEEecCCCCCcceEEEcCCCCEEEEE
Q 026389          205 PSLN---E--TSILLDSLFFANGVALSKDEDYLVVC  235 (239)
Q Consensus       205 ~~~~---~--~~~~~~~l~~pnGia~s~dg~~lyva  235 (239)
                      .++.   +  ...+...-...+.++|+|||++|..+
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~  280 (316)
T 3bg1_A          245 CDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVS  280 (316)
T ss_dssp             CSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEE
T ss_pred             ccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEE
Confidence            7541   1  11222112345789999999877654

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=96.82  E-value=0.071  Score=45.33  Aligned_cols=156  Identities=7%  Similarity=-0.022  Sum_probs=79.2

Q ss_pred             CcceEEEcCCCCEEEEeCCCeEEEEecCCcEEEeeeccCcCccCeEEcCCCCEE-EEeCCCCeEEEc--cCC--ceEEec
Q 026389           78 GPEDVCVDRNGVLYTATRDGWIKRLHKNGTWENWKLIGGDTLLGITTTQENEIL-VCDADKGLLKVT--EEG--VTVLAS  152 (239)
Q Consensus        78 gPe~ia~d~~G~ly~~~~~g~I~~~~~~G~~~~~~~~~~~p~~Gl~~d~~G~L~-v~d~~~g~~~v~--~~g--~~~l~~  152 (239)
                      .-.+++|+++|.++++..++.+..|+.+.............. -+++..+++++ ++....+.+++.  .+|  ...+. 
T Consensus        21 ~V~~v~fs~dg~~la~g~~~~~~iw~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~~~~~~~-   98 (355)
T 3vu4_A           21 PVTDYEFNQDQSCLILSTLKSFEIYNVHPVAHIMSQEMRHLS-KVRMLHRTNYVAFVTGVKEVVHIWDDVKKQDVSRIK-   98 (355)
T ss_dssp             CCCEEEECTTSSEEEEECSSEEEEEEETTEEEEEEEECSCCC-EEEECTTSSEEEEECSSTTEEEEEETTTTEEEEEEE-
T ss_pred             ceEEEEECCCCCEEEEEcCCEEEEEecCCcceeeeeecCCeE-EEEEcCCCCEEEEEECCccEEEEEECCCCcEEEEEE-
Confidence            455789999998776554445666664432222222112222 45566666544 444555677765  345  22221 


Q ss_pred             ccCCcc--c-cccccEEEcCCCCEEEEeCCCC-cCccccc-----------cccee-ecCCceEEEEeCCCCe-------
Q 026389          153 HVNGSR--I-NLADDLIAATDGSIYFSVASTK-FGLHNWG-----------LDLLE-AKPHGKLLKYDPSLNE-------  209 (239)
Q Consensus       153 ~~~g~~--~-~~pn~l~vd~dG~iy~td~~~~-~~~~~~~-----------~~~~e-~~~~g~v~~~d~~~~~-------  209 (239)
                       ..+.-  + -.++.+.+..++.+++=|.... -.+..+.           ...+. +...|.|..||..+++       
T Consensus        99 -~~~~v~~v~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~s~~~la~~sg~~~g~v~iwd~~~~~~~~~~~~  177 (355)
T 3vu4_A           99 -VDAPVKDLFLSREFIVVSYGDVISVFKFGNPWKRITDDIRFGGVCEFSNGLLVYSNEFNLGQIHITKLQSSGSATTQDQ  177 (355)
T ss_dssp             -CSSCEEEEEECSSEEEEEETTEEEEEESSTTCCBSSCCEEEEEEEEEETTEEEEEESSCTTCEEEEECCC---------
T ss_pred             -CCCceEEEEEcCCEEEEEEcCEEEEEECCCCceeeEEeccCCceEEEEccEEEEeCCCcCcEEEEEECCCCCccccccc
Confidence             11110  0 1234444444555555554321 0000000           00111 4567899999987654       


Q ss_pred             ----------EEEecCCCCCcceEEEcCCCCEEEEEe
Q 026389          210 ----------TSILLDSLFFANGVALSKDEDYLVVCE  236 (239)
Q Consensus       210 ----------~~~~~~~l~~pnGia~s~dg~~lyvad  236 (239)
                                +..+...-...+.++|+|||++|..+.
T Consensus       178 ~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s  214 (355)
T 3vu4_A          178 GVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCS  214 (355)
T ss_dssp             ---------CCEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred             cccccccCcccEEEEccCCceEEEEECCCCCEEEEEe
Confidence                      344444445568999999999776553

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=96.81  E-value=0.09  Score=44.53  Aligned_cols=95  Identities=16%  Similarity=0.164  Sum_probs=59.8

Q ss_pred             cceEEEcCCCCEEEEeCCCeEEEEecCC-cEEEeeec-cCcCccCeEEcCCCCEEEEeCCCCeEEEccC-C--ceEEecc
Q 026389           79 PEDVCVDRNGVLYTATRDGWIKRLHKNG-TWENWKLI-GGDTLLGITTTQENEILVCDADKGLLKVTEE-G--VTVLASH  153 (239)
Q Consensus        79 Pe~ia~d~~G~ly~~~~~g~I~~~~~~G-~~~~~~~~-~~~p~~Gl~~d~~G~L~v~d~~~g~~~v~~~-g--~~~l~~~  153 (239)
                      +.+|++.+++++|+...+|.|++-...| +++..... ..... +++++++|++|++....++++-... |  -+.+...
T Consensus       124 ~~~i~~~~~~~~~~~~~~g~v~~S~DgG~tW~~~~~~~~~~~~-~~~~~~~~~~~~~g~~G~~~~S~d~gG~tW~~~~~~  202 (327)
T 2xbg_A          124 PRLIKALGNGSAEMITNVGAIYRTKDSGKNWQALVQEAIGVMR-NLNRSPSGEYVAVSSRGSFYSTWEPGQTAWEPHNRT  202 (327)
T ss_dssp             EEEEEEEETTEEEEEETTCCEEEESSTTSSEEEEECSCCCCEE-EEEECTTSCEEEEETTSSEEEEECTTCSSCEEEECC
T ss_pred             eEEEEEECCCCEEEEeCCccEEEEcCCCCCCEEeecCCCcceE-EEEEcCCCcEEEEECCCcEEEEeCCCCCceeECCCC
Confidence            3456766678888777788888865445 35544322 22345 7888888998887765556655443 4  3333211


Q ss_pred             cCCccccccccEEEcCCCCEEEEeC
Q 026389          154 VNGSRINLADDLIAATDGSIYFSVA  178 (239)
Q Consensus       154 ~~g~~~~~pn~l~vd~dG~iy~td~  178 (239)
                       .   -....+++++++|++|+...
T Consensus       203 -~---~~~~~~~~~~~~g~~~~~~~  223 (327)
T 2xbg_A          203 -T---SRRLHNMGFTPDGRLWMIVN  223 (327)
T ss_dssp             -S---SSCEEEEEECTTSCEEEEET
T ss_pred             -C---CCccceeEECCCCCEEEEeC
Confidence             1   13457888899999988754

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=96.79  E-value=0.041  Score=47.78  Aligned_cols=129  Identities=14%  Similarity=0.069  Sum_probs=71.5

Q ss_pred             ceEEEcCCCCEE-EEeCCCeEEEEecC-CcE-EEeeeccCcCccCeEEcCCCCEEEEeCCCCeEEEc-c-CC---ceEEe
Q 026389           80 EDVCVDRNGVLY-TATRDGWIKRLHKN-GTW-ENWKLIGGDTLLGITTTQENEILVCDADKGLLKVT-E-EG---VTVLA  151 (239)
Q Consensus        80 e~ia~d~~G~ly-~~~~~g~I~~~~~~-G~~-~~~~~~~~~p~~Gl~~d~~G~L~v~d~~~g~~~v~-~-~g---~~~l~  151 (239)
                      .+|+|.++|..+ +++.||.|..|+.. ++. ..+.....+.. .+.  .+++++++....+.+.+. . ..   ...+.
T Consensus       151 ~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~-~~s--~~~~~l~sgs~d~~i~~~d~~~~~~~~~~~~  227 (420)
T 4gga_A          151 SSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVG-SLS--WNSYILSSGSRSGHIHHHDVRVAEHHVATLS  227 (420)
T ss_dssp             EEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEE-EEE--EETTEEEEEETTSEEEEEETTSSSCEEEEEE
T ss_pred             EEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCceE-EEe--eCCCEEEEEeCCCceeEeeecccceeeEEec
Confidence            579999998755 67799999999964 443 22222222333 344  456676666556666554 2 22   22222


Q ss_pred             cccCCccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeE-----EEecCCCCCcceEEEc
Q 026389          152 SHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNET-----SILLDSLFFANGVALS  226 (239)
Q Consensus       152 ~~~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~-----~~~~~~l~~pnGia~s  226 (239)
                      ..     ......+...++|...++...                 .|.+..++..+++.     ......-.....++++
T Consensus       228 ~h-----~~~~~~~~~~~~g~~l~s~~~-----------------D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~  285 (420)
T 4gga_A          228 GH-----SQEVCGLRWAPDGRHLASGGN-----------------DNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWC  285 (420)
T ss_dssp             CC-----SSCEEEEEECTTSSEEEEEET-----------------TSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEEC
T ss_pred             cc-----ccceeeeeecCCCCeeeeeec-----------------cccceEEeeccccccceeeeeecccCCceeeeeeC
Confidence            11     123567888888877666543                 35666666654431     1222222334566777


Q ss_pred             CCCCEEE
Q 026389          227 KDEDYLV  233 (239)
Q Consensus       227 ~dg~~ly  233 (239)
                      |++..++
T Consensus       286 p~~~~~l  292 (420)
T 4gga_A          286 PWQSNVL  292 (420)
T ss_dssp             TTCTTEE
T ss_pred             CCcccEE
Confidence            6555443

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=96.68  E-value=0.029  Score=51.68  Aligned_cols=108  Identities=15%  Similarity=0.241  Sum_probs=65.3

Q ss_pred             CCCEEEEeC-CCeEEEEec--CCcEEEeeeccC-------------cCccCeEEcCCCCEEEEeCCCCeEEEc-cCC-ce
Q 026389           87 NGVLYTATR-DGWIKRLHK--NGTWENWKLIGG-------------DTLLGITTTQENEILVCDADKGLLKVT-EEG-VT  148 (239)
Q Consensus        87 ~G~ly~~~~-~g~I~~~~~--~G~~~~~~~~~~-------------~p~~Gl~~d~~G~L~v~d~~~g~~~v~-~~g-~~  148 (239)
                      +|.+|+++. +++|+.+|.  +|+.. |.....             ... +++++ +|++|+......++.+| .+| ..
T Consensus        62 ~g~vyv~~~~~~~v~AlD~~~tG~~~-W~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~v~v~~~dg~l~alD~~tG~~~  138 (571)
T 2ad6_A           62 GDMMYVHSAFPNNTYALNLNDPGKIV-WQHKPKQDASTKAVMCCDVVDR-GLAYG-AGQIVKKQANGHLLALDAKTGKIN  138 (571)
T ss_dssp             TTEEEEECSTTTCEEEEETTCTTSEE-EEECCCCCGGGGGGCTTCSCCC-CCEEE-TTEEEEECTTSEEEEEETTTCCEE
T ss_pred             CCEEEEEeCCCCEEEEEeCCCCccEE-EEEcCCCCcccccccccccccc-ccEEE-CCEEEEEeCCCEEEEEECCCCCEE
Confidence            789999998 899999997  67642 322111             113 56664 67899998767788899 578 33


Q ss_pred             EEecccCCcc--ccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEE
Q 026389          149 VLASHVNGSR--INLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETS  211 (239)
Q Consensus       149 ~l~~~~~g~~--~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~  211 (239)
                      .-.. ..+..  ........+. +|.+|++.....+            ...|.|+.||.++|+..
T Consensus       139 W~~~-~~~~~~~~~~~~~P~v~-~g~v~vg~~~~~~------------~~~g~v~a~D~~tG~~~  189 (571)
T 2ad6_A          139 WEVE-VCDPKVGSTLTQAPFVA-KDTVLMGCSGAEL------------GVRGAVNAFDLKTGELK  189 (571)
T ss_dssp             EEEE-CCCGGGTCBCCSCCEEE-TTEEEEECBCGGG------------TCCCEEEEEETTTCCEE
T ss_pred             EEec-CCCCCccceeccCCEEE-CCEEEEEecCCcc------------CCCCEEEEEECCCCcEE
Confidence            3222 11110  0011122232 6789988653211            12478999999888764

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=96.68  E-value=0.043  Score=45.80  Aligned_cols=64  Identities=17%  Similarity=0.274  Sum_probs=41.8

Q ss_pred             cceEEEcC--CC-CEEEEeCCCeEEEEecC-CcE---EEeeeccCcCccCeEEcCC--CCEEEEeCCCCeEEEc
Q 026389           79 PEDVCVDR--NG-VLYTATRDGWIKRLHKN-GTW---ENWKLIGGDTLLGITTTQE--NEILVCDADKGLLKVT  143 (239)
Q Consensus        79 Pe~ia~d~--~G-~ly~~~~~g~I~~~~~~-G~~---~~~~~~~~~p~~Gl~~d~~--G~L~v~d~~~g~~~v~  143 (239)
                      -.+++|.+  +| .|++++.|+.|..|+.. ++.   ..+........ .+++.++  |.++++-...+.+++.
T Consensus        60 V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~V~-~v~~~p~~~g~~lasgs~D~~i~lw  132 (316)
T 3bg1_A           60 VWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVN-SVCWAPHDYGLILACGSSDGAISLL  132 (316)
T ss_dssp             EEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCCEEEEECCCSSCCC-EEEECCTTTCSCEEEECSSSCEEEE
T ss_pred             EEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcceEEEEccCCCCceE-EEEECCCCCCcEEEEEcCCCCEEEE
Confidence            45688864  35 56677899999999864 432   22222334456 8999877  7777776666777664

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=96.67  E-value=0.072  Score=46.38  Aligned_cols=41  Identities=17%  Similarity=-0.023  Sum_probs=28.0

Q ss_pred             CCceEEEEeCCCCeEEEec------CCCCCcceEEEcCCCCEEEEEe
Q 026389          196 PHGKLLKYDPSLNETSILL------DSLFFANGVALSKDEDYLVVCE  236 (239)
Q Consensus       196 ~~g~v~~~d~~~~~~~~~~------~~l~~pnGia~s~dg~~lyvad  236 (239)
                      ..|.|..||..+++.....      ..-...+.++++|++..+.++.
T Consensus       380 ~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~  426 (445)
T 2ovr_B          380 DDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGS  426 (445)
T ss_dssp             TTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEEC
T ss_pred             CCCeEEEEECCCCceeeeeeccccCCCCceEEEEEecCCEEEEEEcc
Confidence            3689999998877654332      1223467899999988766653

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=96.65  E-value=0.0073  Score=57.03  Aligned_cols=105  Identities=14%  Similarity=0.077  Sum_probs=63.3

Q ss_pred             CeEEcCCCCEEEEeCCCCeEEEc-cCC-ceEEecccCCcccc-ccccEEEcCCCC-EEEEeCCCCcCcccccccceeecC
Q 026389          121 GITTTQENEILVCDADKGLLKVT-EEG-VTVLASHVNGSRIN-LADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKP  196 (239)
Q Consensus       121 Gl~~d~~G~L~v~d~~~g~~~v~-~~g-~~~l~~~~~g~~~~-~pn~l~vd~dG~-iy~td~~~~~~~~~~~~~~~e~~~  196 (239)
                      .+++.+||++++.+ ...+...+ .+| .+.+........+. ..+++.++|||+ |+++....         .+..+..
T Consensus        21 ~~~w~~dg~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~---------~~~r~~~   90 (740)
T 4a5s_A           21 SLRWISDHEYLYKQ-ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYV---------KQWRHSY   90 (740)
T ss_dssp             CEEECSSSEEEEEE-TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEE---------ECSSSCE
T ss_pred             ccEECCCCcEEEEc-CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCe---------eeEEEcc
Confidence            78888999877776 33444455 456 44443321111111 235689999995 55544210         0111122


Q ss_pred             CceEEEEeCCCCeEEEecCCCCCcceEEEcCCCCEEEEE
Q 026389          197 HGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVC  235 (239)
Q Consensus       197 ~g~v~~~d~~~~~~~~~~~~l~~pnGia~s~dg~~lyva  235 (239)
                      .+.++.||..+++.+.+......-..++|||||+.|.++
T Consensus        91 ~~~~~~~d~~~~~~~~l~~~~~~~~~~~~SPdG~~la~~  129 (740)
T 4a5s_A           91 TASYDIYDLNKRQLITEERIPNNTQWVTWSPVGHKLAYV  129 (740)
T ss_dssp             EEEEEEEETTTTEECCSSCCCTTEEEEEECSSTTCEEEE
T ss_pred             ceEEEEEECCCCcEEEcccCCCcceeeEECCCCCEEEEE
Confidence            478999999999877655444455778999999876543

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=96.62  E-value=0.044  Score=51.62  Aligned_cols=109  Identities=18%  Similarity=0.310  Sum_probs=64.9

Q ss_pred             CCCEEEEeCCCeEEEEec-CCcEEEeeeccCc-------------CccCeEEcCCCCEEEEeCCCCeEEEc-cCC-ceEE
Q 026389           87 NGVLYTATRDGWIKRLHK-NGTWENWKLIGGD-------------TLLGITTTQENEILVCDADKGLLKVT-EEG-VTVL  150 (239)
Q Consensus        87 ~G~ly~~~~~g~I~~~~~-~G~~~~~~~~~~~-------------p~~Gl~~d~~G~L~v~d~~~g~~~v~-~~g-~~~l  150 (239)
                      +|.||+++.+++|+.+|. +|+. .|......             .. +++++ +|+||+......++.+| .+| ...-
T Consensus        70 ~g~vyv~~~~~~v~AlD~~tG~~-~W~~~~~~~~~~~~~~~~~~~~~-~~~~~-~g~v~v~~~dg~l~AlDa~TG~~~W~  146 (689)
T 1yiq_A           70 DGVMYTTGPFSVVYALDARDGRL-IWKYDPQSDRHRAGEACCDAVNR-GVAVW-KGKVYVGVLDGRLEAIDAKTGQRAWS  146 (689)
T ss_dssp             TTEEEEECGGGCEEEEETTTCCE-EEEECCCCCGGGGGGCTTCSCCC-CCEEE-TTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred             CCEEEEEcCCCeEEEEECCCCce-eEEEcCCCCccccccccccCCCC-ccEEE-CCEEEEEccCCEEEEEECCCCCEeee
Confidence            789999999999999996 6764 23321111             13 55664 67899998777788888 578 3322


Q ss_pred             eccc-CCcc-ccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEE
Q 026389          151 ASHV-NGSR-INLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETS  211 (239)
Q Consensus       151 ~~~~-~g~~-~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~  211 (239)
                      .... +... ........+ .+|.+|++.....++            ..|+|+.||.++|+..
T Consensus       147 ~~~~~~~~~~~~~~~sP~v-~~g~v~vg~~~~~~~------------~~g~v~a~D~~tG~~~  196 (689)
T 1yiq_A          147 VDTRADHKRSYTITGAPRV-VNGKVVIGNGGAEFG------------VRGYVTAYDAETGKEA  196 (689)
T ss_dssp             EECCSCTTSCCBCCSCCEE-ETTEEEECCBCTTTC------------CBCEEEEEETTTCCEE
T ss_pred             ecCcCCCCCCccccCCcEE-ECCEEEEEeCCCccC------------CCCEEEEEECCCCcEE
Confidence            2211 1100 011111222 267888875442111            2578999999888763

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=96.58  E-value=0.082  Score=43.10  Aligned_cols=105  Identities=13%  Similarity=0.039  Sum_probs=60.3

Q ss_pred             ceEEEcCCCCEE-EEeCCCeEEEEecC-CcEEEeeeccCcCccCeEEcCCCCEEEEeCCCCeEEEc--cCC---ceEEec
Q 026389           80 EDVCVDRNGVLY-TATRDGWIKRLHKN-GTWENWKLIGGDTLLGITTTQENEILVCDADKGLLKVT--EEG---VTVLAS  152 (239)
Q Consensus        80 e~ia~d~~G~ly-~~~~~g~I~~~~~~-G~~~~~~~~~~~p~~Gl~~d~~G~L~v~d~~~g~~~v~--~~g---~~~l~~  152 (239)
                      .++++.++|+.. +++.||.|..|+.. ++...... +.... -..+..+++++++....+.+.+.  ..+   ...+..
T Consensus        71 ~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~-~h~~~-~~~~~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~  148 (318)
T 4ggc_A           71 SSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMT-SHSAR-VGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSG  148 (318)
T ss_dssp             EEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CCSSC-EEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEEC
T ss_pred             EEEEECCCCCEEEEEECCCcEEEeecCCceeEEEec-Cccce-EEEeecCCCEEEEEecCCceEeeecCCCceeEEEEcC
Confidence            578999988755 67799999999864 44322111 11122 23344556666666556666554  223   222221


Q ss_pred             ccCCccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCC
Q 026389          153 HVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLN  208 (239)
Q Consensus       153 ~~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~  208 (239)
                      .     ......+.+.++|+..++...                 .|.|..||..++
T Consensus       149 ~-----~~~~~~~~~~~~~~~l~s~~~-----------------d~~i~iwd~~~~  182 (318)
T 4ggc_A          149 H-----SQEVCGLRWAPDGRHLASGGN-----------------DNLVNVWPSAPG  182 (318)
T ss_dssp             C-----SSCEEEEEECTTSSEEEEEET-----------------TSCEEEEESSCB
T ss_pred             c-----cCceEEEEEcCCCCEEEEEec-----------------CcceeEEECCCC
Confidence            1     123567788888877666543                 466777776543

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=96.57  E-value=0.043  Score=51.50  Aligned_cols=109  Identities=15%  Similarity=0.277  Sum_probs=65.3

Q ss_pred             CCCEEEEeCCCeEEEEec-CCcEEEeeeccC-------------cCccCeEEcCCCCEEEEeCCCCeEEEc-cCC-ceEE
Q 026389           87 NGVLYTATRDGWIKRLHK-NGTWENWKLIGG-------------DTLLGITTTQENEILVCDADKGLLKVT-EEG-VTVL  150 (239)
Q Consensus        87 ~G~ly~~~~~g~I~~~~~-~G~~~~~~~~~~-------------~p~~Gl~~d~~G~L~v~d~~~g~~~v~-~~g-~~~l  150 (239)
                      +|.||+++.+++|+.+|. +|+.. |.....             ... +++++ ++++|+......++.+| .+| ...-
T Consensus        66 ~g~vyv~~~~~~v~AlD~~tG~~~-W~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~v~v~~~dg~l~alD~~tG~~~W~  142 (668)
T 1kv9_A           66 DGVIYTSMSWSRVIAVDAASGKEL-WRYDPEVAKVKARTSCCDAVNR-GVALW-GDKVYVGTLDGRLIALDAKTGKAIWS  142 (668)
T ss_dssp             TTEEEEEEGGGEEEEEETTTCCEE-EEECCCCCGGGGGGCTTCSCCC-CCEEE-BTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred             CCEEEEECCCCeEEEEECCCChhc-eEECCCCCccccccccccCCcc-ceEEE-CCEEEEEcCCCEEEEEECCCCCEeee
Confidence            789999999999999996 67642 322111             123 56664 67899988777788888 678 3322


Q ss_pred             ecccCCc-cccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEE
Q 026389          151 ASHVNGS-RINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETS  211 (239)
Q Consensus       151 ~~~~~g~-~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~  211 (239)
                      ....+.. .........+. +|.+|+......++            ..|.|+.||.++|++.
T Consensus       143 ~~~~~~~~~~~~~~~P~v~-~~~v~vg~~~~~~~------------~~g~v~a~D~~tG~~~  191 (668)
T 1kv9_A          143 QQTTDPAKPYSITGAPRVV-KGKVIIGNGGAEYG------------VRGFVSAYDADTGKLA  191 (668)
T ss_dssp             EECSCTTSSCBCCSCCEEE-TTEEEECCBCTTTC------------CBCEEEEEETTTCCEE
T ss_pred             eccCCCCCcceecCCCEEE-CCEEEEeCCCCCcC------------CCCEEEEEECCCCcEE
Confidence            2211100 01111122332 67888876442211            2578999999888764

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=96.53  E-value=0.15  Score=44.30  Aligned_cols=39  Identities=21%  Similarity=0.121  Sum_probs=27.7

Q ss_pred             CceEEEEeCCCCeEEEecCC-CCCcc-eEEEcCCCCEEEEE
Q 026389          197 HGKLLKYDPSLNETSILLDS-LFFAN-GVALSKDEDYLVVC  235 (239)
Q Consensus       197 ~g~v~~~d~~~~~~~~~~~~-l~~pn-Gia~s~dg~~lyva  235 (239)
                      .|.|..+|..+++....+.+ ...+. .++|+|||++|+.+
T Consensus       304 DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~LaSG  344 (356)
T 2w18_A          304 SGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLAG  344 (356)
T ss_dssp             TSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEEEEE
T ss_pred             CCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEEEEE
Confidence            57899999998886555543 22344 48999999987654

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=96.50  E-value=0.0017  Score=56.43  Aligned_cols=127  Identities=18%  Similarity=0.236  Sum_probs=49.2

Q ss_pred             EEcCCCCEEEEeCCCeEEEEec-CCcEEEeeeccCcCccCeEEcCCCCEEEEeCC-CCeEEEc-cCC-ceEEecccCCcc
Q 026389           83 CVDRNGVLYTATRDGWIKRLHK-NGTWENWKLIGGDTLLGITTTQENEILVCDAD-KGLLKVT-EEG-VTVLASHVNGSR  158 (239)
Q Consensus        83 a~d~~G~ly~~~~~g~I~~~~~-~G~~~~~~~~~~~p~~Gl~~d~~G~L~v~d~~-~g~~~v~-~~g-~~~l~~~~~g~~  158 (239)
                      +++ ++.+|+++.+|.|+.+|. +|+.. |....+... ...+-.+|++|++... ..++.++ .+| ...... .....
T Consensus         6 ~v~-~~~v~~gs~dg~v~a~d~~tG~~~-W~~~~~~~~-s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~-~~~~~   81 (369)
T 2hz6_A            6 TLP-ETLLFVSTLDGSLHAVSKRTGSIK-WTLKEDPVL-QVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLP-FTIPE   81 (369)
T ss_dssp             --C-TTEEEEEETTSEEEEEETTTCCEE-EEEECCCSC-CCC-----CCEEECTTTCCEEEC-----CCSEECS-CCHHH
T ss_pred             eee-CCEEEEEcCCCEEEEEECCCCCEE-EEecCCCce-ecceEcCCCEEEEeCCCCEEEEEECCCCceeeeee-ccCcc
Confidence            553 689999999999999995 67643 222223333 3334456777777544 4455666 466 322211 11000


Q ss_pred             ccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecCCCCCcceEEEcCCCCEEEEE
Q 026389          159 INLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVC  235 (239)
Q Consensus       159 ~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~~l~~pnGia~s~dg~~lyva  235 (239)
                      .. ....++..+|.+|++..                  .|+|+.+|+++|+..-...   .+..+.++|+++.||+.
T Consensus        82 ~~-~~sp~~~~~~~v~~g~~------------------dg~v~a~D~~tG~~~w~~~---~~~~~~~~p~~~~v~~~  136 (369)
T 2hz6_A           82 LV-QASPCRSSDGILYMGKK------------------QDIWYVIDLLTGEKQQTLS---SAFADSLSPSTSLLYLG  136 (369)
T ss_dssp             HH-TTCSCC-----CCCCEE------------------EEEEEEECCC-------------------------EEEE
T ss_pred             cc-ccCceEecCCEEEEEeC------------------CCEEEEEECCCCcEEEEec---CCCcccccccCCEEEEE
Confidence            00 00112223566666432                  3789999988776532221   12234456677777765

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=96.46  E-value=0.27  Score=39.91  Aligned_cols=130  Identities=15%  Similarity=0.082  Sum_probs=72.4

Q ss_pred             ceEEEcCCCCEEEEeCCCeEEEEec-CCcEEEeeec---cCcCccCeEEcCCCCEEEEeCCCCeEEEc--cCC--ceEEe
Q 026389           80 EDVCVDRNGVLYTATRDGWIKRLHK-NGTWENWKLI---GGDTLLGITTTQENEILVCDADKGLLKVT--EEG--VTVLA  151 (239)
Q Consensus        80 e~ia~d~~G~ly~~~~~g~I~~~~~-~G~~~~~~~~---~~~p~~Gl~~d~~G~L~v~d~~~g~~~v~--~~g--~~~l~  151 (239)
                      ..|+|++++.|-++ .|+.|..||. +|+.......   ...-. .+++.++|+.+++-...+.+++.  .++  ...+.
T Consensus        29 ~~l~WS~~~~lAvg-~D~tV~iWd~~tg~~~~~~~~~~~~~~V~-~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~  106 (318)
T 4ggc_A           29 NLVDWSSGNVLAVA-LDNSVYLWSASSGDILQLLQMEQPGEYIS-SVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMT  106 (318)
T ss_dssp             BCEEECTTSEEEEE-ETTEEEEEETTTCCEEEEEECCSTTCCEE-EEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred             eEEEECCCCEEEEE-eCCEEEEEECCCCCEEEEEEecCCCCeEE-EEEECCCCCEEEEEECCCcEEEeecCCceeEEEec
Confidence            45899887644444 5899999996 5664332222   22345 78999999988877777888876  355  22222


Q ss_pred             cccCCccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCC--eEEEecCCCCCcceEEEcCCC
Q 026389          152 SHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLN--ETSILLDSLFFANGVALSKDE  229 (239)
Q Consensus       152 ~~~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~--~~~~~~~~l~~pnGia~s~dg  229 (239)
                      .. .      ..-..+..++.+.++...                 .+.+..++..++  .+..+.........+++++++
T Consensus       107 ~h-~------~~~~~~~~~~~~l~s~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (318)
T 4ggc_A          107 SH-S------ARVGSLSWNSYILSSGSR-----------------SGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDG  162 (318)
T ss_dssp             CC-S------SCEEEEEEETTEEEEEET-----------------TSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTS
T ss_pred             Cc-c------ceEEEeecCCCEEEEEec-----------------CCceEeeecCCCceeEEEEcCccCceEEEEEcCCC
Confidence            11 1      112334445555555433                 344544544332  222333334445666677777


Q ss_pred             CEEEEE
Q 026389          230 DYLVVC  235 (239)
Q Consensus       230 ~~lyva  235 (239)
                      ++|+.+
T Consensus       163 ~~l~s~  168 (318)
T 4ggc_A          163 RHLASG  168 (318)
T ss_dssp             SEEEEE
T ss_pred             CEEEEE
Confidence            665543

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=96.46  E-value=0.053  Score=50.73  Aligned_cols=136  Identities=10%  Similarity=0.020  Sum_probs=77.3

Q ss_pred             ceEEEcCCCC-EEEEeC-----CCeEEEEecC-------C--cEEEeeeccCcCccCeEEcCCC-CEEEEeCCC----Ce
Q 026389           80 EDVCVDRNGV-LYTATR-----DGWIKRLHKN-------G--TWENWKLIGGDTLLGITTTQEN-EILVCDADK----GL  139 (239)
Q Consensus        80 e~ia~d~~G~-ly~~~~-----~g~I~~~~~~-------G--~~~~~~~~~~~p~~Gl~~d~~G-~L~v~d~~~----g~  139 (239)
                      .++++++||+ |++...     +..|+.++.+       |  +.+.+..... .. --.++++| .||+.....    .+
T Consensus       236 ~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~-~~-~~~~s~dg~~l~~~s~~~~~~~~l  313 (710)
T 2xdw_A          236 GGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFE-GE-YDYVTNEGTVFTFKTNRHSPNYRL  313 (710)
T ss_dssp             EEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSS-SC-EEEEEEETTEEEEEECTTCTTCEE
T ss_pred             EEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCCC-cE-EEEEeccCCEEEEEECCCCCCCEE
Confidence            4789999986 444432     5689999864       3  3444433222 22 22355666 466654322    35


Q ss_pred             EEEc-cCC-c---eEEecccCCccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCe-EEEe
Q 026389          140 LKVT-EEG-V---TVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNE-TSIL  213 (239)
Q Consensus       140 ~~v~-~~g-~---~~l~~~~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~-~~~~  213 (239)
                      +.++ .++ .   +.+....+.   ....++++.+++.++++...               .+..+|+++|..+++ ++.+
T Consensus       314 ~~~d~~~~~~~~~~~l~~~~~~---~~~~~~~~~~~~~lv~~~~~---------------~g~~~l~~~~~~~g~~~~~l  375 (710)
T 2xdw_A          314 INIDFTDPEESKWKVLVPEHEK---DVLEWVACVRSNFLVLCYLH---------------DVKNTLQLHDLATGALLKIF  375 (710)
T ss_dssp             EEEETTSCCGGGCEEEECCCSS---CEEEEEEEETTTEEEEEEEE---------------TTEEEEEEEETTTCCEEEEE
T ss_pred             EEEeCCCCCcccceeccCCCCC---CeEEEEEEEcCCEEEEEEEE---------------CCEEEEEEEECCCCCEEEec
Confidence            6666 333 2   444432221   23567777767788877533               123578999985454 4554


Q ss_pred             cCCCCCcceEEEcCCCCEEEEE
Q 026389          214 LDSLFFANGVALSKDEDYLVVC  235 (239)
Q Consensus       214 ~~~l~~pnGia~s~dg~~lyva  235 (239)
                      ........++++++|++.++++
T Consensus       376 ~~~~~~v~~~~~s~d~~~l~~~  397 (710)
T 2xdw_A          376 PLEVGSVVGYSGQKKDTEIFYQ  397 (710)
T ss_dssp             CCCSSEEEEEECCTTCSEEEEE
T ss_pred             CCCCceEEEEecCCCCCEEEEE
Confidence            4333345677888999877665

>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*

Probab=96.41  E-value=0.0089  Score=55.14  Aligned_cols=59  Identities=17%  Similarity=0.356  Sum_probs=47.1

Q ss_pred             CcCCcceEEEcCCCCEEE-EeC------------CCeEEEEec-CCcEEEeeec--cCcCccCeEEcCCC-CEEEEe
Q 026389           75 ILNGPEDVCVDRNGVLYT-ATR------------DGWIKRLHK-NGTWENWKLI--GGDTLLGITTTQEN-EILVCD  134 (239)
Q Consensus        75 ~~~gPe~ia~d~~G~ly~-~~~------------~g~I~~~~~-~G~~~~~~~~--~~~p~~Gl~~d~~G-~L~v~d  134 (239)
                      .+.+|.+|++|++|+||+ ++.            .+.++++++ +|+++.+...  ...|+ |++|.+|+ .|||+-
T Consensus       474 ~fnsPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpn-GiafSPD~ktLfV~v  549 (592)
T 4a9v_A          474 MFNSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVT-GISFSPDQKTLFVGI  549 (592)
T ss_dssp             CCCCEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEE-EEEECTTSSEEEEEE
T ss_pred             ccCCCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCcccc-CCEECCCCCEEEEEE
Confidence            378899999999999998 442            238999998 6888777643  45789 99999999 488874

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=96.38  E-value=0.31  Score=41.15  Aligned_cols=136  Identities=13%  Similarity=0.110  Sum_probs=74.0

Q ss_pred             CCcceEEEcCCCCEEEEeCCCeEEEEecCCc-EEEeeec----cCcCccCeEEcCCCCEEEEeCCCCeEEEccC-Cc--e
Q 026389           77 NGPEDVCVDRNGVLYTATRDGWIKRLHKNGT-WENWKLI----GGDTLLGITTTQENEILVCDADKGLLKVTEE-GV--T  148 (239)
Q Consensus        77 ~gPe~ia~d~~G~ly~~~~~g~I~~~~~~G~-~~~~~~~----~~~p~~Gl~~d~~G~L~v~d~~~g~~~v~~~-g~--~  148 (239)
                      ..-.+|++..++.+|+....|.|++-...|+ ++.....    ...-. ++++++ +++|++... +.+....| |.  +
T Consensus        36 ~~~~~v~~~~~~~~~~~G~~g~i~~s~DgG~tW~~~~~~~~~~~~~~~-~i~~~~-~~~~~~g~~-g~i~~S~DgG~tW~  112 (327)
T 2xbg_A           36 ATILDMSFIDRHHGWLVGVNATLMETRDGGQTWEPRTLVLDHSDYRFN-SVSFQG-NEGWIVGEP-PIMLHTTDGGQSWS  112 (327)
T ss_dssp             SCEEEEEESSSSCEEEEETTTEEEEESSTTSSCEECCCCCSCCCCEEE-EEEEET-TEEEEEEET-TEEEEESSTTSSCE
T ss_pred             CcEEEEEECCCCcEEEEcCCCeEEEeCCCCCCCeECCCCCCCCCccEE-EEEecC-CeEEEEECC-CeEEEECCCCCCce
Confidence            3566788877788887667888888654453 5543221    11234 788875 778887543 44444544 42  3


Q ss_pred             EEecccCCccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecCCC-CCcceEEEcC
Q 026389          149 VLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSL-FFANGVALSK  227 (239)
Q Consensus       149 ~l~~~~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~~l-~~pnGia~s~  227 (239)
                      .+.... ..+ ..+.++++..++++|+....                  |.||+-+-.+..-+.+.... ....++++++
T Consensus       113 ~~~~~~-~~~-~~~~~i~~~~~~~~~~~~~~------------------g~v~~S~DgG~tW~~~~~~~~~~~~~~~~~~  172 (327)
T 2xbg_A          113 QIPLDP-KLP-GSPRLIKALGNGSAEMITNV------------------GAIYRTKDSGKNWQALVQEAIGVMRNLNRSP  172 (327)
T ss_dssp             ECCCCT-TCS-SCEEEEEEEETTEEEEEETT------------------CCEEEESSTTSSEEEEECSCCCCEEEEEECT
T ss_pred             ECcccc-CCC-CCeEEEEEECCCCEEEEeCC------------------ccEEEEcCCCCCCEEeecCCCcceEEEEEcC
Confidence            222110 001 12456777777888776532                  55666543333334333221 2335677777


Q ss_pred             CCCEEEEE
Q 026389          228 DEDYLVVC  235 (239)
Q Consensus       228 dg~~lyva  235 (239)
                      +++.+.+.
T Consensus       173 ~~~~~~~g  180 (327)
T 2xbg_A          173 SGEYVAVS  180 (327)
T ss_dssp             TSCEEEEE
T ss_pred             CCcEEEEE
Confidence            77654443

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=96.37  E-value=0.22  Score=43.06  Aligned_cols=126  Identities=10%  Similarity=0.063  Sum_probs=74.0

Q ss_pred             EEeCCCeEEEEecCC---cEEEeeeccCcCccCeEEcCCCCEEEEeCCCCeEEEc--cCC-c--eEEecccCCccccccc
Q 026389           92 TATRDGWIKRLHKNG---TWENWKLIGGDTLLGITTTQENEILVCDADKGLLKVT--EEG-V--TVLASHVNGSRINLAD  163 (239)
Q Consensus        92 ~~~~~g~I~~~~~~G---~~~~~~~~~~~p~~Gl~~d~~G~L~v~d~~~g~~~v~--~~g-~--~~l~~~~~g~~~~~pn  163 (239)
                      +++.++.+..++...   ....+........ ++.+.++|+.+++....+.+++.  ..+ .  ..+... .+ ......
T Consensus       204 sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~-~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~-~~-~~~~V~  280 (420)
T 4gga_A          204 SGSRSGHIHHHDVRVAEHHVATLSGHSQEVC-GLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTF-TQ-HQGAVK  280 (420)
T ss_dssp             EEETTSEEEEEETTSSSCEEEEEECCSSCEE-EEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEE-CC-CSSCEE
T ss_pred             EEeCCCceeEeeecccceeeEEeccccccee-eeeecCCCCeeeeeeccccceEEeeccccccceeeeee-cc-cCCcee
Confidence            344566666665322   1222222334455 77888888877776666666664  233 1  111111 11 112356


Q ss_pred             cEEEcCCC-CEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecCCCCCcceEEEcCCCCEEEEE
Q 026389          164 DLIAATDG-SIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVC  235 (239)
Q Consensus       164 ~l~vd~dG-~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~~l~~pnGia~s~dg~~lyva  235 (239)
                      .+++.+++ .++++-..+               ..+.|..||..+++.......-.....++++++++.++++
T Consensus       281 ~~~~~p~~~~~la~~~gs---------------~D~~I~iwd~~t~~~~~~~~~~~~v~~~~~~~~~~~lv~~  338 (420)
T 4gga_A          281 AVAWCPWQSNVLATGGGT---------------SDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISG  338 (420)
T ss_dssp             EEEECTTCTTEEEEEECT---------------TTCEEEEEETTTTEEEEEEECSSCEEEEEEETTTTEEEEE
T ss_pred             eeeeCCCcccEEEEEeec---------------CCCEEEEEeCCccccceeeccccceeeeeecCCCCeEEEE
Confidence            77888875 565543221               2478889999888876666666677889999999988765

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=96.24  E-value=0.038  Score=51.69  Aligned_cols=134  Identities=8%  Similarity=0.015  Sum_probs=75.1

Q ss_pred             eEEEcCCCC-EEEEeCCC----eEEEEec-CCcEEEeeeccCcCccCeEEcCCCCEEEEeC----CCCeEEEcc-CC-c-
Q 026389           81 DVCVDRNGV-LYTATRDG----WIKRLHK-NGTWENWKLIGGDTLLGITTTQENEILVCDA----DKGLLKVTE-EG-V-  147 (239)
Q Consensus        81 ~ia~d~~G~-ly~~~~~g----~I~~~~~-~G~~~~~~~~~~~p~~Gl~~d~~G~L~v~d~----~~g~~~v~~-~g-~-  147 (239)
                      ++++++||+ |+++..++    .|+.++. +++++.+........ .... ++|++|+...    ...++.++. ++ . 
T Consensus       231 ~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~-~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~~~  308 (695)
T 2bkl_A          231 QSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFRLLVKGVGAKY-EVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPARA  308 (695)
T ss_dssp             EEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCEEEEECSSCCE-EEEE-ETTEEEEEECTTCTTCEEEEEBTTBCSGG
T ss_pred             EEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceEEeecCCCceE-EEEe-cCCcEEEEECCCCCCCEEEEEeCCCCCcc
Confidence            678999885 44444333    7888875 455555544333333 4444 4555766543    234556663 34 3 


Q ss_pred             --eEEecccCCccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEec-CCCCCcceEE
Q 026389          148 --TVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILL-DSLFFANGVA  224 (239)
Q Consensus       148 --~~l~~~~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~-~~l~~pnGia  224 (239)
                        +.+....++   ....++++. ++.++++...               .+..+|+.++.+++..+.+. .......+++
T Consensus       309 ~~~~l~~~~~~---~~l~~~~~~-~~~lv~~~~~---------------dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~  369 (695)
T 2bkl_A          309 SWKEIVPEDSS---ASLLSVSIV-GGHLSLEYLK---------------DATSEVRVATLKGKPVRTVQLPGVGAASNLM  369 (695)
T ss_dssp             GCEEEECCCSS---CEEEEEEEE-TTEEEEEEEE---------------TTEEEEEEEETTCCEEEECCCSSSSEECCCB
T ss_pred             CCeEEecCCCC---CeEEEEEEE-CCEEEEEEEE---------------CCEEEEEEEeCCCCeeEEecCCCCeEEEEee
Confidence              444432212   234567777 6777777532               12368889998755555443 2233446677


Q ss_pred             EcCCCCEEEEE
Q 026389          225 LSKDEDYLVVC  235 (239)
Q Consensus       225 ~s~dg~~lyva  235 (239)
                      +++|++.++++
T Consensus       370 ~s~d~~~l~~~  380 (695)
T 2bkl_A          370 GLEDLDDAYYV  380 (695)
T ss_dssp             SCTTCSEEEEE
T ss_pred             cCCCCCEEEEE
Confidence            88888877654

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=96.15  E-value=0.079  Score=49.47  Aligned_cols=138  Identities=12%  Similarity=0.109  Sum_probs=71.9

Q ss_pred             cceEEEcCCCCEE--EEeC----CCeEEEEecC-CcEEEeeeccCc-CccCeEEcCCCC-EEEEeCCCC-----------
Q 026389           79 PEDVCVDRNGVLY--TATR----DGWIKRLHKN-GTWENWKLIGGD-TLLGITTTQENE-ILVCDADKG-----------  138 (239)
Q Consensus        79 Pe~ia~d~~G~ly--~~~~----~g~I~~~~~~-G~~~~~~~~~~~-p~~Gl~~d~~G~-L~v~d~~~g-----------  138 (239)
                      -.+++|+|||+..  ..+.    +..|+.++.+ |+.......... .. ++++.+||+ |+.+.....           
T Consensus       123 ~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~~~~~-~~~wspDg~~l~~~~~d~~~~~~~~~~~~~  201 (695)
T 2bkl_A          123 LGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDVIEGGKYA-TPKWTPDSKGFYYEWLPTDPSIKVDERPGY  201 (695)
T ss_dssp             EEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCCBSCCTTC-CCEECTTSSEEEEEECCCCTTSCGGGGGGG
T ss_pred             EEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCcccCccccc-ceEEecCCCEEEEEEecCCCCCccccCCCC
Confidence            3467999999744  3332    3578889864 443201111112 25 899999996 444443222           


Q ss_pred             --eEEEc-cCC-c--eEEecccCCccccccccEEEcCCC-CEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEE
Q 026389          139 --LLKVT-EEG-V--TVLASHVNGSRINLADDLIAATDG-SIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETS  211 (239)
Q Consensus       139 --~~~v~-~~g-~--~~l~~~~~g~~~~~pn~l~vd~dG-~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~  211 (239)
                        ++..+ ..+ .  .++....+. + .+..++.+++|| .|+++.... .             ....|+.++..+++.+
T Consensus       202 ~~v~~~~l~t~~~~~~lv~~~~~~-~-~~~~~~~~SpDG~~l~~~~~~~-~-------------~~~~l~~~~~~~~~~~  265 (695)
T 2bkl_A          202 TTIRYHTLGTEPSKDTVVHERTGD-P-TTFLQSDLSRDGKYLFVYILRG-W-------------SENDVYWKRPGEKDFR  265 (695)
T ss_dssp             CEEEEEETTSCGGGCEEEECCCCC-T-TCEEEEEECTTSCCEEEEEEET-T-------------TEEEEEEECTTCSSCE
T ss_pred             CEEEEEECCCCchhceEEEecCCC-C-EEEEEEEECCCCCEEEEEEeCC-C-------------CceEEEEEcCCCCceE
Confidence              44445 333 2  233222111 1 234578999999 465554321 0             1246777776666666


Q ss_pred             EecCCCCCcceEEEcCCCCEEEEE
Q 026389          212 ILLDSLFFANGVALSKDEDYLVVC  235 (239)
Q Consensus       212 ~~~~~l~~pnGia~s~dg~~lyva  235 (239)
                      .+...........+ +||+ +|+.
T Consensus       266 ~l~~~~~~~~~~~~-~~g~-l~~~  287 (695)
T 2bkl_A          266 LLVKGVGAKYEVHA-WKDR-FYVL  287 (695)
T ss_dssp             EEEECSSCCEEEEE-ETTE-EEEE
T ss_pred             EeecCCCceEEEEe-cCCc-EEEE
Confidence            65543333333333 5666 5543

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=96.13  E-value=0.14  Score=44.11  Aligned_cols=64  Identities=8%  Similarity=0.078  Sum_probs=41.7

Q ss_pred             cceEEEcC--------CCCEE-EEeCCCeEEEEec-CC-cEEEeeeccCcCccCeEEcCCC-CEEEEeCCCCeEEEc
Q 026389           79 PEDVCVDR--------NGVLY-TATRDGWIKRLHK-NG-TWENWKLIGGDTLLGITTTQEN-EILVCDADKGLLKVT  143 (239)
Q Consensus        79 Pe~ia~d~--------~G~ly-~~~~~g~I~~~~~-~G-~~~~~~~~~~~p~~Gl~~d~~G-~L~v~d~~~g~~~v~  143 (239)
                      =.+|+|.|        +|++. +++.|+.|..||. ++ ............. .+++.+++ +++++-...+.+++.
T Consensus       139 v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~~~~~~~~~v~-~v~~~p~~~~~l~~~~~d~~v~~w  214 (393)
T 4gq1_A          139 VNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPILAGYPLSSPGI-SVQFRPSNPNQLIVGERNGNIRIF  214 (393)
T ss_dssp             EEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEEEEEECSSCEE-EEEEETTEEEEEEEEETTSEEEEE
T ss_pred             eEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceeeeecCCCCCcE-EEEECCCCCceEEecCCCCEEEEE
Confidence            34678875        66666 5568999999985 33 3333334445556 89999887 455555556777764

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=95.85  E-value=0.3  Score=45.76  Aligned_cols=22  Identities=18%  Similarity=0.388  Sum_probs=16.8

Q ss_pred             CCCEEEEeC------CCeEEEEec-CCcE
Q 026389           87 NGVLYTATR------DGWIKRLHK-NGTW  108 (239)
Q Consensus        87 ~G~ly~~~~------~g~I~~~~~-~G~~  108 (239)
                      +|.+|++..      +|.|+.+|. +|+.
T Consensus       174 ~~~v~v~~~~~~~~~~g~v~a~D~~tG~~  202 (677)
T 1kb0_A          174 KGKVIIGNGGAEYGVRGYITAYDAETGER  202 (677)
T ss_dssp             TTEEEECCBCTTTCCBCEEEEEETTTCCE
T ss_pred             CCEEEEEecccccCCCCEEEEEECCCCcE
Confidence            578888763      689999996 6764

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=95.84  E-value=0.24  Score=45.05  Aligned_cols=134  Identities=12%  Similarity=0.039  Sum_probs=75.8

Q ss_pred             CcceEEEcCC------CCEE-EEeCCCeEEEEecC-CcE------------EEeeeccCcCccCeEEcCCCCEEEEeCCC
Q 026389           78 GPEDVCVDRN------GVLY-TATRDGWIKRLHKN-GTW------------ENWKLIGGDTLLGITTTQENEILVCDADK  137 (239)
Q Consensus        78 gPe~ia~d~~------G~ly-~~~~~g~I~~~~~~-G~~------------~~~~~~~~~p~~Gl~~d~~G~L~v~d~~~  137 (239)
                      ...+++|.|+      +.+. +++.||.|..|+.. ++.            ..+........ .+++.+++. +++-...
T Consensus       209 ~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~-sv~~s~~~~-lasgs~D  286 (524)
T 2j04_B          209 EVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLIT-TFDFLSPTT-VVCGFKN  286 (524)
T ss_dssp             SEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEE-EEEESSSSE-EEEEETT
T ss_pred             cEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEE-EEEecCCCe-EEEEeCC
Confidence            3567889875      3444 66799999998863 211            11111223344 788876654 4444456


Q ss_pred             CeEEEc--cCC-c--eEEecccCCccccccccE--EEcCCC-CEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCe
Q 026389          138 GLLKVT--EEG-V--TVLASHVNGSRINLADDL--IAATDG-SIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNE  209 (239)
Q Consensus       138 g~~~v~--~~g-~--~~l~~~~~g~~~~~pn~l--~vd~dG-~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~  209 (239)
                      |.+++.  .++ .  ..+... .    ...+++  +..++| .+++|-+.                 .|.|..||..+++
T Consensus       287 gtV~lWD~~~~~~~~~~~~~H-~----~~V~sv~~~~s~~g~~~laS~S~-----------------D~tvklWD~~~~~  344 (524)
T 2j04_B          287 GFVAEFDLTDPEVPSFYDQVH-D----SYILSVSTAYSDFEDTVVSTVAV-----------------DGYFYIFNPKDIA  344 (524)
T ss_dssp             SEEEEEETTBCSSCSEEEECS-S----SCEEEEEEECCTTSCCEEEEEET-----------------TSEEEEECGGGHH
T ss_pred             CEEEEEECCCCCCceEEeecc-c----ccEEEEEEEcCCCCCeEEEEecc-----------------CCeEEEEECCCCC
Confidence            777765  334 2  222211 1    235666  456777 77777654                 5788888876543


Q ss_pred             EE-EecCCC--CCcceEEEcCCCCEEEEE
Q 026389          210 TS-ILLDSL--FFANGVALSKDEDYLVVC  235 (239)
Q Consensus       210 ~~-~~~~~l--~~pnGia~s~dg~~lyva  235 (239)
                      .. .+....  ...+.++|+||++.+..+
T Consensus       345 ~~~~~~~~~~~~~v~~v~fsp~~~~l~s~  373 (524)
T 2j04_B          345 TTKTTVSRFRGSNLVPVVYCPQIYSYIYS  373 (524)
T ss_dssp             HHCEEEEECSCCSCCCEEEETTTTEEEEE
T ss_pred             cccccccccccCcccceEeCCCcCeEEEe
Confidence            21 111111  124679999999876544

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=95.70  E-value=0.19  Score=46.69  Aligned_cols=110  Identities=19%  Similarity=0.216  Sum_probs=64.8

Q ss_pred             CCCEEEEeC-CCeEEEEec--CCcEEEeeeccC-------------cCccCeEEc-CCCC----EEEEeCCCCeEEEc-c
Q 026389           87 NGVLYTATR-DGWIKRLHK--NGTWENWKLIGG-------------DTLLGITTT-QENE----ILVCDADKGLLKVT-E  144 (239)
Q Consensus        87 ~G~ly~~~~-~g~I~~~~~--~G~~~~~~~~~~-------------~p~~Gl~~d-~~G~----L~v~d~~~g~~~v~-~  144 (239)
                      +|.||+++. ++.|+.+|.  +|+.. |.....             ... |+++. .+|+    ||+......++.+| .
T Consensus        62 ~g~vyv~~~~~~~v~AlD~~~tG~~l-W~~~~~~~~~~~~~~~~~~~~~-g~av~p~~g~~~~rV~v~t~dg~l~AlDa~  139 (599)
T 1w6s_A           62 DGKMYIHTSFPNNTFALGLDDPGTIL-WQDKPKQNPAARAVACCDLVNR-GLAYWPGDGKTPALILKTQLDGNVAALNAE  139 (599)
T ss_dssp             TTEEEEECSTTTCEEEEETTCTTSEE-EEECCCCCGGGGGGCSSCSCCC-CCEEECCCSSSCCEEEEECTTSEEEEEETT
T ss_pred             CCEEEEEeCCCCEEEEEeCCCCCcEE-EEECCCCCcccccccccccccc-ceEEEecCCcceeEEEEEcCCCEEEEEECC
Confidence            689999998 899999997  67642 322111             124 67773 2456    99998777788899 6


Q ss_pred             CCceEEecccCCcc--ccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEE
Q 026389          145 EGVTVLASHVNGSR--INLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETS  211 (239)
Q Consensus       145 ~g~~~l~~~~~g~~--~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~  211 (239)
                      +|..+......+..  ........+. +|.+|+......+            ...|.|+.||.++|+..
T Consensus       140 TG~~~W~~~~~~~~~~~~~~ssP~v~-~g~V~vg~~g~e~------------g~~g~v~A~D~~TG~~~  195 (599)
T 1w6s_A          140 TGETVWKVENSDIKVGSTLTIAPYVV-KDKVIIGSSGAEL------------GVRGYLTAYDVKTGEQV  195 (599)
T ss_dssp             TCCEEEEEECCCGGGTCBCCSCCEEE-TTEEEECCBCGGG------------TCCCEEEEEETTTCCEE
T ss_pred             CCCEEEeecCCCCCccceeecCCEEE-CCEEEEEeccccc------------CCCCeEEEEECCCCcEE
Confidence            78322221111100  0111122232 5788887543111            12578999999888763

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=95.69  E-value=0.17  Score=47.55  Aligned_cols=134  Identities=9%  Similarity=0.079  Sum_probs=73.6

Q ss_pred             ceEEEcCCCC-EEEEeC-----CCeEEEEecC-C--c-EEEeeeccCcCccCeEEcCCC-CEEEEeCC----CCeEEEc-
Q 026389           80 EDVCVDRNGV-LYTATR-----DGWIKRLHKN-G--T-WENWKLIGGDTLLGITTTQEN-EILVCDAD----KGLLKVT-  143 (239)
Q Consensus        80 e~ia~d~~G~-ly~~~~-----~g~I~~~~~~-G--~-~~~~~~~~~~p~~Gl~~d~~G-~L~v~d~~----~g~~~v~-  143 (239)
                      .++.+++||+ |++...     ...|+.++.+ +  + ++.+......-. ... .++| .||+....    ..++.++ 
T Consensus       271 ~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~-~~~-~~dg~~l~~~s~~~~~~~~l~~~d~  348 (741)
T 1yr2_A          271 HGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQW-DFV-DGVGDQLWFVSGDGAPLKKIVRVDL  348 (741)
T ss_dssp             EEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCE-EEE-EEETTEEEEEECTTCTTCEEEEEEC
T ss_pred             EEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceE-EEE-eccCCEEEEEECCCCCCCEEEEEeC
Confidence            4678999995 444442     3488888863 3  4 444433222222 332 3556 46665432    2366666 


Q ss_pred             cC--C-ceEEecccCCccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecC-CCCC
Q 026389          144 EE--G-VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLD-SLFF  219 (239)
Q Consensus       144 ~~--g-~~~l~~~~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~-~l~~  219 (239)
                      .+  + .+.+....++    ...+++++ ++.++++...               .+..+|+.++.+++..+.+.. ....
T Consensus       349 ~~~~~~~~~l~~~~~~----~l~~~~~~-~~~lv~~~~~---------------dg~~~l~~~~~~g~~~~~l~~~~~~~  408 (741)
T 1yr2_A          349 SGSTPRFDTVVPESKD----NLESVGIA-GNRLFASYIH---------------DAKSQVLAFDLDGKPAGAVSLPGIGS  408 (741)
T ss_dssp             SSSSCEEEEEECCCSS----EEEEEEEE-BTEEEEEEEE---------------TTEEEEEEEETTSCEEEECBCSSSCE
T ss_pred             CCCccccEEEecCCCC----eEEEEEEE-CCEEEEEEEE---------------CCEEEEEEEeCCCCceeeccCCCCeE
Confidence            33  3 3334322221    23556666 5677776532               123578999987665555432 2344


Q ss_pred             cceEEEcCCCCEEEEE
Q 026389          220 ANGVALSKDEDYLVVC  235 (239)
Q Consensus       220 pnGia~s~dg~~lyva  235 (239)
                      ..++++++|++.|+++
T Consensus       409 v~~~~~s~d~~~l~~~  424 (741)
T 1yr2_A          409 ASGLSGRPGDRHAYLS  424 (741)
T ss_dssp             EEEEECCBTCSCEEEE
T ss_pred             EEEeecCCCCCEEEEE
Confidence            5778889998866644

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=95.69  E-value=0.53  Score=43.16  Aligned_cols=22  Identities=9%  Similarity=0.222  Sum_probs=17.5

Q ss_pred             CCCEEEEeC------CCeEEEEec-CCcE
Q 026389           87 NGVLYTATR------DGWIKRLHK-NGTW  108 (239)
Q Consensus        87 ~G~ly~~~~------~g~I~~~~~-~G~~  108 (239)
                      +|.+|++..      +|.|+.+|. +|+.
T Consensus       160 ~g~v~vg~~~~~~~~~g~v~a~D~~tG~~  188 (571)
T 2ad6_A          160 KDTVLMGCSGAELGVRGAVNAFDLKTGEL  188 (571)
T ss_dssp             TTEEEEECBCGGGTCCCEEEEEETTTCCE
T ss_pred             CCEEEEEecCCccCCCCEEEEEECCCCcE
Confidence            678998875      789999997 5764

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=95.68  E-value=0.52  Score=41.43  Aligned_cols=99  Identities=10%  Similarity=-0.055  Sum_probs=57.9

Q ss_pred             CCcceEEEcCC-CCEE-EEeCCCeEEEEecCCcEEEe--eeccCcCccCeEEcCCCCEEEEeCCCCeEEEc-cCC--ceE
Q 026389           77 NGPEDVCVDRN-GVLY-TATRDGWIKRLHKNGTWENW--KLIGGDTLLGITTTQENEILVCDADKGLLKVT-EEG--VTV  149 (239)
Q Consensus        77 ~gPe~ia~d~~-G~ly-~~~~~g~I~~~~~~G~~~~~--~~~~~~p~~Gl~~d~~G~L~v~d~~~g~~~v~-~~g--~~~  149 (239)
                      ....+++|.++ +.++ +++.+|.|..||........  ........ .++++++|+.+++-...|.+++. ..+  ...
T Consensus       150 ~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~~~~v~-~v~wspdg~~lasgs~dg~v~iwd~~~~~~~~  228 (434)
T 2oit_A          150 GMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLPSTVAVT-SVCWSPKGKQLAVGKQNGTVVQYLPTLQEKKV  228 (434)
T ss_dssp             GSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEECGGGCEE-EEEECTTSSCEEEEETTSCEEEECTTCCEEEE
T ss_pred             CceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeeccCCCCcee-EEEEcCCCCEEEEEcCCCcEEEEccCCccccc
Confidence            34678999996 6766 56799999999964332221  12234566 89999999755554455666654 445  333


Q ss_pred             EecccC--CccccccccEEEcCCCCEEEE
Q 026389          150 LASHVN--GSRINLADDLIAATDGSIYFS  176 (239)
Q Consensus       150 l~~~~~--g~~~~~pn~l~vd~dG~iy~t  176 (239)
                      +.....  .........+..++++.+.++
T Consensus       229 ~~~~~~~~~~~~~~v~~v~w~~~~~~l~~  257 (434)
T 2oit_A          229 IPCPPFYESDHPVRVLDVLWIGTYVFAIV  257 (434)
T ss_dssp             ECCCTTCCTTSCEEEEEEEEEETTEEEEE
T ss_pred             ccCCcccCCCCceeEEEEEEecCceEEEE
Confidence            322111  100124567788777755443

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=95.56  E-value=0.41  Score=45.01  Aligned_cols=139  Identities=11%  Similarity=0.037  Sum_probs=72.7

Q ss_pred             ceEEEcCCCCEE--EEeCCC----eEEEEecC-CcEEEeeeccCcCccCeEEcCCCCEEEEeCCCC--------------
Q 026389           80 EDVCVDRNGVLY--TATRDG----WIKRLHKN-GTWENWKLIGGDTLLGITTTQENEILVCDADKG--------------  138 (239)
Q Consensus        80 e~ia~d~~G~ly--~~~~~g----~I~~~~~~-G~~~~~~~~~~~p~~Gl~~d~~G~L~v~d~~~g--------------  138 (239)
                      .+++|+|||+..  ..+..|    +|+.++.+ |+............ ++++.+|..|+++.....              
T Consensus       166 ~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~~~~~~~-~~~wspD~~l~~~~~~~~~~~~~~~~~~~~~~  244 (741)
T 1yr2_A          166 DAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADELKWVKFS-GLAWLGNDALLYSRFAEPKEGQAFQALNYNQT  244 (741)
T ss_dssp             EEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEEEEEEESC-CCEESTTSEEEEEECCCC--------CCCCCE
T ss_pred             EeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCccCCCceec-cEEEECCCEEEEEEecCcccccccccCCCCCE
Confidence            357899999643  333333    58888864 44432211112234 788888844655543222              


Q ss_pred             eEEEc-cCC-c--eEEecccCCccccccccEEEcCCCC-EEEEeCCCCcCcccccccceeecCCceEEEEeCCCC--e-E
Q 026389          139 LLKVT-EEG-V--TVLASHVNGSRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLN--E-T  210 (239)
Q Consensus       139 ~~~v~-~~g-~--~~l~~~~~g~~~~~pn~l~vd~dG~-iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~--~-~  210 (239)
                      ++..+ ..+ .  .++... .+.+ .+..++.+++||+ |+++.... .            .....|+.+|.+++  + .
T Consensus       245 v~~~~lgt~~~~~~lv~~~-~~~~-~~~~~~~~SpDG~~l~~~~~~~-~------------~~~~~l~~~d~~~~~~~~~  309 (741)
T 1yr2_A          245 VWLHRLGTPQSADQPVFAT-PELP-KRGHGASVSSDGRWVVITSSEG-T------------DPVNTVHVARVTNGKIGPV  309 (741)
T ss_dssp             EEEEETTSCGGGCEEEECC-TTCT-TCEEEEEECTTSCEEEEEEECT-T------------CSCCEEEEEEEETTEECCC
T ss_pred             EEEEECCCCchhCEEEecc-CCCC-eEEEEEEECCCCCEEEEEEEcc-C------------CCcceEEEEECCCCCCccc
Confidence            33334 233 1  233222 1111 1346889999995 55554321 0            01357888888766  4 5


Q ss_pred             EEecCCCCCcceEEEcCCCCEEEEE
Q 026389          211 SILLDSLFFANGVALSKDEDYLVVC  235 (239)
Q Consensus       211 ~~~~~~l~~pnGia~s~dg~~lyva  235 (239)
                      +.+......-... +++||+.||+.
T Consensus       310 ~~l~~~~~~~~~~-~~~dg~~l~~~  333 (741)
T 1yr2_A          310 TALIPDLKAQWDF-VDGVGDQLWFV  333 (741)
T ss_dssp             EEEECSSSSCEEE-EEEETTEEEEE
T ss_pred             EEecCCCCceEEE-EeccCCEEEEE
Confidence            5555433222223 45788877765

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=95.35  E-value=0.41  Score=44.76  Aligned_cols=139  Identities=14%  Similarity=0.086  Sum_probs=69.4

Q ss_pred             cceEEEcCCCCE--EEEeCC----CeEEEEec-CCcEEEeeeccCcCccCeEEcCCCC-EEEEeCCC------------C
Q 026389           79 PEDVCVDRNGVL--YTATRD----GWIKRLHK-NGTWENWKLIGGDTLLGITTTQENE-ILVCDADK------------G  138 (239)
Q Consensus        79 Pe~ia~d~~G~l--y~~~~~----g~I~~~~~-~G~~~~~~~~~~~p~~Gl~~d~~G~-L~v~d~~~------------g  138 (239)
                      -.+++|+|||+.  |+.+..    ..|+.+|. +|+.........+-. ++++. ||+ ||.+....            .
T Consensus       131 l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~k~~-~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~  208 (693)
T 3iuj_A          131 LDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLKDVKFS-GISWL-GNEGFFYSSYDKPDGSELSARTDQH  208 (693)
T ss_dssp             EEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEEEESC-CCEEE-TTTEEEEEESSCCC-------CCCC
T ss_pred             EEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccccCCceec-cEEEe-CCCEEEEEEecCcccccccccCCCc
Confidence            345689999973  444433    35777775 455432211112234 77887 774 65554331            1


Q ss_pred             -eEEEc-cCC--c-eEEecccCCccccccccEEEcCCCC-EEEEeCCCCcCcccccccceeecCCceEEEEeCCCC--eE
Q 026389          139 -LLKVT-EEG--V-TVLASHVNGSRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLN--ET  210 (239)
Q Consensus       139 -~~~v~-~~g--~-~~l~~~~~g~~~~~pn~l~vd~dG~-iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~--~~  210 (239)
                       ++..+ ..+  . ..+....+..+ .+-.++.+++||+ |+|+.....              ....|+.+|.+++  +.
T Consensus       209 ~v~~~~lgt~~~~~~~v~~~~~~~~-~~~~~~~~SpDg~~l~~~~~~~~--------------~~~~i~~~d~~~~~~~~  273 (693)
T 3iuj_A          209 KVYFHRLGTAQEDDRLVFGAIPAQH-HRYVGATVTEDDRFLLISAANST--------------SGNRLYVKDLSQENAPL  273 (693)
T ss_dssp             EEEEEETTSCGGGCEEEESCSGGGC-CSEEEEEECTTSCEEEEEEESSS--------------SCCEEEEEETTSTTCCC
T ss_pred             EEEEEECCCCcccceEEEecCCCCC-eEEEEEEEcCCCCEEEEEEccCC--------------CCcEEEEEECCCCCCce
Confidence             33333 222  2 23322211011 1235788999995 666654311              1247888887554  45


Q ss_pred             EEecCCCCCcceEEEcCCCCEEEEE
Q 026389          211 SILLDSLFFANGVALSKDEDYLVVC  235 (239)
Q Consensus       211 ~~~~~~l~~pnGia~s~dg~~lyva  235 (239)
                      +.+......-.. .++++|+.||+.
T Consensus       274 ~~l~~~~~~~~~-~~~~~g~~l~~~  297 (693)
T 3iuj_A          274 LTVQGDLDADVS-LVDNKGSTLYLL  297 (693)
T ss_dssp             EEEECSSSSCEE-EEEEETTEEEEE
T ss_pred             EEEeCCCCceEE-EEeccCCEEEEE
Confidence            555433221111 256677766654

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=94.89  E-value=0.42  Score=44.00  Aligned_cols=57  Identities=16%  Similarity=0.324  Sum_probs=39.9

Q ss_pred             CCCEEEEeCCCeEEEEec-CCcEEEeeeccCc-----------CccCeEEcCCCCEEEEeCCCCeEEEc-cCC
Q 026389           87 NGVLYTATRDGWIKRLHK-NGTWENWKLIGGD-----------TLLGITTTQENEILVCDADKGLLKVT-EEG  146 (239)
Q Consensus        87 ~G~ly~~~~~g~I~~~~~-~G~~~~~~~~~~~-----------p~~Gl~~d~~G~L~v~d~~~g~~~v~-~~g  146 (239)
                      +|.+|+++..+.|+.+|. +|+.. |......           .. |+++ .++++|+......++.+| .+|
T Consensus        68 ~g~vyv~~~~~~v~AlD~~tG~~~-W~~~~~~~~~~~~~~~~~~~-g~a~-~~~~v~~~t~dg~l~AlD~~TG  137 (582)
T 1flg_A           68 DGVIYVTASYSRLFALDAKTGKRL-WTYNHRLPDDIRPCCDVVNR-GAAI-YGDKVFFGTLDASVVALNKNTG  137 (582)
T ss_dssp             TTEEEEEETTTEEEEEESSSCCEE-EEEECCCCTTCCCSSCSCCC-CCEE-ETTEEEEEETTTEEEEEESSSC
T ss_pred             CCEEEEEcCCCCEEEEECCCCcEE-EEEcCCCCcccccccccCCC-ccEE-ECCEEEEEeCCCEEEEEECCCC
Confidence            789999987666999996 67642 3221111           13 6666 367899998777888999 578

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=94.62  E-value=0.32  Score=45.47  Aligned_cols=39  Identities=23%  Similarity=0.267  Sum_probs=23.1

Q ss_pred             CceEEEEeCCCCeEEEecCCCCCcceEEEcCCCCEEEEE
Q 026389          197 HGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVC  235 (239)
Q Consensus       197 ~g~v~~~d~~~~~~~~~~~~l~~pnGia~s~dg~~lyva  235 (239)
                      .|.|+.+|+.++++.=-........+..+...|..||+.
T Consensus       437 ~g~l~A~D~~tG~~~W~~~~~~~~~~~~~~t~gg~vf~g  475 (668)
T 1kv9_A          437 SGALLAWDPVKQKAAWKVPYPTHWNGGTLSTAGNLVFQG  475 (668)
T ss_dssp             EEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEE
T ss_pred             cceEEEEeCCCCcEEEEccCCCCCcCceeEeCCCEEEEE
Confidence            389999999999864222212223444454455666665

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=94.40  E-value=1.3  Score=38.09  Aligned_cols=38  Identities=11%  Similarity=0.128  Sum_probs=23.0

Q ss_pred             CceEEEEeCCCCeEEEecCC-CCCcceEEEcCCCCEEEEEe
Q 026389          197 HGKLLKYDPSLNETSILLDS-LFFANGVALSKDEDYLVVCE  236 (239)
Q Consensus       197 ~g~v~~~d~~~~~~~~~~~~-l~~pnGia~s~dg~~lyvad  236 (239)
                      .|.|..||..+++......+ -.....+++  |+++|+++.
T Consensus       315 dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~--~~~~l~sg~  353 (435)
T 1p22_A          315 DNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGA  353 (435)
T ss_dssp             TSCEEEEETTTCCEEEEECCCSSCEEEEEC--CSSEEEEEE
T ss_pred             CCeEEEEECCCCCEEEEEeCCcCcEEEEEe--cCCEEEEEe
Confidence            57899999887765444332 233455555  666666543

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=94.10  E-value=1.7  Score=40.19  Aligned_cols=16  Identities=0%  Similarity=-0.004  Sum_probs=13.5

Q ss_pred             ceEEEcCCCCEEEEEe
Q 026389          221 NGVALSKDEDYLVVCE  236 (239)
Q Consensus       221 nGia~s~dg~~lyvad  236 (239)
                      .+++++|+.+.+|+..
T Consensus       396 ~~~a~dp~~~~~yv~~  411 (599)
T 1w6s_A          396 GHDSYDPKRELFFMGI  411 (599)
T ss_dssp             CBCEEETTTTEEEEEE
T ss_pred             CCccCCCCCCEEEEec
Confidence            5789999999999863

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=94.08  E-value=2.2  Score=36.75  Aligned_cols=61  Identities=16%  Similarity=0.277  Sum_probs=35.6

Q ss_pred             EEcCCCC-EEEEeCCCeEEEEec-CCcEE-EeeeccCcCccCeEEcCCCCEEEEeCCCCeEEEc--cCC
Q 026389           83 CVDRNGV-LYTATRDGWIKRLHK-NGTWE-NWKLIGGDTLLGITTTQENEILVCDADKGLLKVT--EEG  146 (239)
Q Consensus        83 a~d~~G~-ly~~~~~g~I~~~~~-~G~~~-~~~~~~~~p~~Gl~~d~~G~L~v~d~~~g~~~v~--~~g  146 (239)
                      ++..+|. +++++.+|.|..|+. +++.. .+....+... .+++  +++++++....|.+++.  .++
T Consensus       138 ~~~~d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~-~l~~--~~~~l~sg~~dg~i~vwd~~~~  203 (435)
T 1p22_A          138 CLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVL-CLQY--DERVIITGSSDSTVRVWDVNTG  203 (435)
T ss_dssp             EEECCSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEE-EEEC--CSSEEEEEETTSCEEEEESSSC
T ss_pred             EEEECCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEE-EEEE--CCCEEEEEcCCCeEEEEECCCC
Confidence            3334554 557779999999986 34432 2222223334 5666  56666665556767665  455

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=93.86  E-value=2.9  Score=36.00  Aligned_cols=14  Identities=14%  Similarity=0.242  Sum_probs=6.7

Q ss_pred             EEEEeCCCeEEEEe
Q 026389           90 LYTATRDGWIKRLH  103 (239)
Q Consensus        90 ly~~~~~g~I~~~~  103 (239)
                      +++++.+|.|..|+
T Consensus       172 l~s~~~dg~i~vwd  185 (445)
T 2ovr_B          172 IISGSTDRTLKVWN  185 (445)
T ss_dssp             EEEEETTSCEEEEE
T ss_pred             EEEEeCCCeEEEEE
Confidence            33444555555554

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=93.68  E-value=0.98  Score=42.13  Aligned_cols=132  Identities=12%  Similarity=0.183  Sum_probs=69.0

Q ss_pred             eEEEcCCCC-EEEEeCC-------------CeEEEEecC-Cc---EEEeeecc---CcCccCeEEcCCCC-EEEEeC-C-
Q 026389           81 DVCVDRNGV-LYTATRD-------------GWIKRLHKN-GT---WENWKLIG---GDTLLGITTTQENE-ILVCDA-D-  136 (239)
Q Consensus        81 ~ia~d~~G~-ly~~~~~-------------g~I~~~~~~-G~---~~~~~~~~---~~p~~Gl~~d~~G~-L~v~d~-~-  136 (239)
                      +++|. ||. ||.+..+             .+|++++.. ++   ...+....   ..-. ++.+++||+ |++... . 
T Consensus       179 ~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~-~~~~SpDg~~l~~~~~~~~  256 (693)
T 3iuj_A          179 GISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYV-GATVTEDDRFLLISAANST  256 (693)
T ss_dssp             CCEEE-TTTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEE-EEEECTTSCEEEEEEESSS
T ss_pred             cEEEe-CCCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEE-EEEEcCCCCEEEEEEccCC
Confidence            46888 774 6655433             358887742 21   22322221   1235 778899996 434322 1 


Q ss_pred             -C-CeEEEc-c--CC-ceEEecccCCccccccccEEEcCCC-CEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCe
Q 026389          137 -K-GLLKVT-E--EG-VTVLASHVNGSRINLADDLIAATDG-SIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNE  209 (239)
Q Consensus       137 -~-g~~~v~-~--~g-~~~l~~~~~g~~~~~pn~l~vd~dG-~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~  209 (239)
                       . .++.++ .  ++ ...+....+..     .. .++++| .+||....              ..++++|+++|.++++
T Consensus       257 ~~~~i~~~d~~~~~~~~~~l~~~~~~~-----~~-~~~~~g~~l~~~t~~--------------~~~~~~l~~~d~~~~~  316 (693)
T 3iuj_A          257 SGNRLYVKDLSQENAPLLTVQGDLDAD-----VS-LVDNKGSTLYLLTNR--------------DAPNRRLVTVDAANPG  316 (693)
T ss_dssp             SCCEEEEEETTSTTCCCEEEECSSSSC-----EE-EEEEETTEEEEEECT--------------TCTTCEEEEEETTSCC
T ss_pred             CCcEEEEEECCCCCCceEEEeCCCCce-----EE-EEeccCCEEEEEECC--------------CCCCCEEEEEeCCCCC
Confidence             1 344445 2  22 34443332221     11 145554 78776543              1135899999988654


Q ss_pred             E---EEecCCCCCcceEEEcCCCCEEEEEe
Q 026389          210 T---SILLDSLFFANGVALSKDEDYLVVCE  236 (239)
Q Consensus       210 ~---~~~~~~l~~pnGia~s~dg~~lyvad  236 (239)
                      .   +.+...-...  +.+++++++|+++.
T Consensus       317 ~~~~~~l~~~~~~~--~~~s~~g~~lv~~~  344 (693)
T 3iuj_A          317 PAHWRDLIPERQQV--LTVHSGSGYLFAEY  344 (693)
T ss_dssp             GGGCEEEECCCSSC--EEEEEETTEEEEEE
T ss_pred             ccccEEEecCCCCE--EEEEEECCEEEEEE
Confidence            3   4444322222  37888888887653

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=92.88  E-value=0.19  Score=43.23  Aligned_cols=107  Identities=17%  Similarity=0.281  Sum_probs=54.3

Q ss_pred             CCCEEEEeCCCeEEEEec-CCcEEEeeeccC---cCccCeEE---cCCCCEEEEe--CCCCeEEEc-cCC-ceEEec---
Q 026389           87 NGVLYTATRDGWIKRLHK-NGTWENWKLIGG---DTLLGITT---TQENEILVCD--ADKGLLKVT-EEG-VTVLAS---  152 (239)
Q Consensus        87 ~G~ly~~~~~g~I~~~~~-~G~~~~~~~~~~---~p~~Gl~~---d~~G~L~v~d--~~~g~~~v~-~~g-~~~l~~---  152 (239)
                      +|.+|+++.+|+|+.+|. +|+. .|.....   .+. +..-   ..+|.+|+..  ....++.++ .+| .+.-..   
T Consensus        10 ~~~V~v~t~dG~l~Ald~~tG~~-~W~~~~~~~~p~~-~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~   87 (339)
T 2be1_A           10 SDILIAADVEGGLHAVDRRNGHI-IWSIEPENFQPLI-EIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQ   87 (339)
T ss_dssp             EEEEEEEETTSCEEEEETTTTEE-EEEECGGGSCCSE-ECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHH
T ss_pred             CCEEEEEeCCCeEEEEECCCCcE-EEEecCCccCCcE-EecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecccc
Confidence            578999999999999995 6754 2332221   222 2110   0133455554  223344455 345 221111   


Q ss_pred             ccCCccccccccEEE------cCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEe
Q 026389          153 HVNGSRINLADDLIA------ATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSIL  213 (239)
Q Consensus       153 ~~~g~~~~~pn~l~v------d~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~  213 (239)
                      .....|+..-...++      ..+|.+|+...                  +|+++.+|..+|++.-.
T Consensus        88 lv~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~------------------~g~l~ald~~tG~~~W~  136 (339)
T 2be1_A           88 LVSTSPLHLKTNIVVNDSGKIVEDEKVYTGSM------------------RTIMYTINMLNGEIISA  136 (339)
T ss_dssp             HHTTCSEEEECC----------CCEEEEECEE------------------EEEEEEEETTTCCEEEE
T ss_pred             ceeccccccCCCceeecccccccCCEEEEEec------------------CCEEEEEECCCCcEEEE
Confidence            112222322222333      25778888764                  38899999888876543

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=92.55  E-value=1  Score=42.61  Aligned_cols=110  Identities=11%  Similarity=0.063  Sum_probs=57.8

Q ss_pred             ceEEEc-CCCCE--EEEeCCC----eEEEEecCCc-EEEeeeccCcCccCeEEcCCCC-EEEEeCC-C----CeEEEcc-
Q 026389           80 EDVCVD-RNGVL--YTATRDG----WIKRLHKNGT-WENWKLIGGDTLLGITTTQENE-ILVCDAD-K----GLLKVTE-  144 (239)
Q Consensus        80 e~ia~d-~~G~l--y~~~~~g----~I~~~~~~G~-~~~~~~~~~~p~~Gl~~d~~G~-L~v~d~~-~----g~~~v~~-  144 (239)
                      .+.+|+ |||+.  |+.+.+|    +|+.++.++. ............ ++++.+||+ |+.+... .    .++..+. 
T Consensus       177 ~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~~~~~-~~~WspDg~~l~y~~~d~~~~~~~v~~~~lg  255 (751)
T 2xe4_A          177 MEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVSGTNG-EIVWGPDHTSLFYVTKDETLRENKVWRHVMG  255 (751)
T ss_dssp             EEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEEEECS-CCEECSSTTEEEEEEECTTCCEEEEEEEETT
T ss_pred             eeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCccccCcee-eEEEecCCCEEEEEEECCCCCCCEEEEEECC
Confidence            457899 99963  3444443    4888886533 110000011234 788999984 5444321 1    2344442 


Q ss_pred             CC--c-eEEecccCCccccccccEEEcCCCC-EEEEeCCCCcCcccccccceeecCCceEEEEeCCCC
Q 026389          145 EG--V-TVLASHVNGSRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLN  208 (239)
Q Consensus       145 ~g--~-~~l~~~~~g~~~~~pn~l~vd~dG~-iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~  208 (239)
                      .+  . ..+... .+..  +-.++.+++||+ |+++..+.               ....|+.+|.+++
T Consensus       256 t~~~~~~lv~~~-~~~~--~~~~~~~SpDg~~l~~~~~~~---------------~~~~l~~~d~~~~  305 (751)
T 2xe4_A          256 KLQSEDVCLYEE-HNPL--FSAFMYKAADTNTLCIGSQSP---------------ETAEVHLLDLRKG  305 (751)
T ss_dssp             SCGGGCEEEEEC-CCTT--CEEEEEECTTSSEEEEEEECS---------------SCEEEEEEESSSC
T ss_pred             CCchhcEEEEec-CCCc--eEEEEEECCCCCEEEEEecCC---------------CCceEEEEECCCC
Confidence            33  2 233222 1112  335788999994 66665331               1357888888764

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=92.47  E-value=2.8  Score=39.27  Aligned_cols=38  Identities=24%  Similarity=0.349  Sum_probs=21.5

Q ss_pred             ceEEEEeCCCCeEEEecCCCCCcceEEEcCCCCEEEEE
Q 026389          198 GKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVC  235 (239)
Q Consensus       198 g~v~~~d~~~~~~~~~~~~l~~pnGia~s~dg~~lyva  235 (239)
                      |.|..+|+.++++.=-...-...++-.++..|..||+.
T Consensus       455 g~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~g  492 (689)
T 1yiq_A          455 GKLIAWDPVKQQAAWEVPYVTIFNGGTLSTAGNLVFEG  492 (689)
T ss_dssp             EEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEE
T ss_pred             eeEEEEECCCCCeEeEccCCCCccCccceECCCEEEEE
Confidence            88999999999864322111112333444455556554

>3a0f_A Xyloglucanase; beta-propeller, hydrolase; 2.50A {Geotrichum SP}

Probab=91.37  E-value=8  Score=36.58  Aligned_cols=123  Identities=15%  Similarity=0.253  Sum_probs=67.5

Q ss_pred             ceEEEcC--CCCEEEEeCCCeEEEEecCCc-EEEeeecc---CcCc--cCeEEcCC--CCEEEEeCCCC-eEEEccCC--
Q 026389           80 EDVCVDR--NGVLYTATRDGWIKRLHKNGT-WENWKLIG---GDTL--LGITTTQE--NEILVCDADKG-LLKVTEEG--  146 (239)
Q Consensus        80 e~ia~d~--~G~ly~~~~~g~I~~~~~~G~-~~~~~~~~---~~p~--~Gl~~d~~--G~L~v~d~~~g-~~~v~~~g--  146 (239)
                      +.|++++  .+.+|++...+.|++=+-.|+ |+......   ....  ..|++++.  +++|++....+ +++-...|  
T Consensus       136 ~~l~v~p~~~~~v~a~~~~~~l~~S~DgG~TW~~~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~g~v~~S~DgG~t  215 (763)
T 3a0f_A          136 ERLAVNPHWTDELWFGSRTQGLWRSTDRAQTWSRMNQLPDSSTYGIGIISVIFDPKNVGTAYVASHAVGGLWVTWDGGAN  215 (763)
T ss_dssp             CCEEECTTSTTCEEEECSSSCEEEESSTTSSCEECTTSCCCSCTTTCEEEEEECSSSTTCEEEEESSTTCEEEESSSSSS
T ss_pred             ceEEECCCCCCEEEEEeCCCcEEEECCCCcCccccccCcccCCCccceEEEEECCCCCCEEEEEEeCCCeEEEECCCCCC
Confidence            3689987  478999887778887644443 55432111   1112  04567754  37999877654 54444444  


Q ss_pred             ceEEecccCCc-----------------cccccccEEEcCCCCEEEE--eCCCCcCcccccccceeecCCceEEEEeCCC
Q 026389          147 VTVLASHVNGS-----------------RINLADDLIAATDGSIYFS--VASTKFGLHNWGLDLLEAKPHGKLLKYDPSL  207 (239)
Q Consensus       147 ~~~l~~~~~g~-----------------~~~~pn~l~vd~dG~iy~t--d~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~  207 (239)
                      -+.+.......                 ....+..++++++|++|++  +....|+           ...|.|+|.+-.+
T Consensus       216 W~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~-----------~~~g~v~rS~D~G  284 (763)
T 3a0f_A          216 WSQVGGQPTQWSDWTKSIVAASGTAIQSSGPLPIKIALGKNGRLYITYSDAPGPWG-----------VLYGEVWSYDPTN  284 (763)
T ss_dssp             CEECTTCCCSCCHHHHHHHHHHCCCCSSSSCEEEEEEECTTSCEEEEEESSCSSSC-----------CCCEEEEEEETTT
T ss_pred             ccccCCCccccccccccccccccccccCCCCcceeEEECCCCcEEEEeccCCCCCC-----------CcceeEEEEeCCC
Confidence            23332111000                 1123456788889999988  3221121           1247899987665


Q ss_pred             CeEEEe
Q 026389          208 NETSIL  213 (239)
Q Consensus       208 ~~~~~~  213 (239)
                      +.-+.+
T Consensus       285 ~tW~~~  290 (763)
T 3a0f_A          285 GNWKHI  290 (763)
T ss_dssp             TEEEEC
T ss_pred             CceEEC
Confidence            555544

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=91.29  E-value=6  Score=34.42  Aligned_cols=127  Identities=9%  Similarity=0.107  Sum_probs=71.6

Q ss_pred             CCcceEEEcCCCCEEEEeCCCeEEEEecCC--cEEEeeeccCcCccCeEEcCCCCEEEEeCCCCeEEEc-cCC-ceEEec
Q 026389           77 NGPEDVCVDRNGVLYTATRDGWIKRLHKNG--TWENWKLIGGDTLLGITTTQENEILVCDADKGLLKVT-EEG-VTVLAS  152 (239)
Q Consensus        77 ~gPe~ia~d~~G~ly~~~~~g~I~~~~~~G--~~~~~~~~~~~p~~Gl~~d~~G~L~v~d~~~g~~~v~-~~g-~~~l~~  152 (239)
                      ..+..+++ .+..|+++ .++.|..|+...  +............ .+..-+. ++.++.....+...+ .++ ...+. 
T Consensus        88 p~V~~l~f-d~~~L~v~-~~~~l~v~dv~sl~~~~~~~~~~~~v~-~i~~~~p-~~av~~~dG~L~v~dl~~~~~~~~~-  162 (388)
T 1xip_A           88 PDVIFVCF-HGDQVLVS-TRNALYSLDLEELSEFRTVTSFEKPVF-QLKNVNN-TLVILNSVNDLSALDLRTKSTKQLA-  162 (388)
T ss_dssp             TTEEEEEE-ETTEEEEE-ESSEEEEEESSSTTCEEEEEECSSCEE-EEEECSS-EEEEEETTSEEEEEETTTCCEEEEE-
T ss_pred             CCeeEEEE-CCCEEEEE-cCCcEEEEEchhhhccCccceeeccee-eEEecCC-CEEEEECCCCEEEEEccCCcccccc-
Confidence            34888999 33456676 788999998532  1111111111223 4443322 366665544444444 444 33222 


Q ss_pred             ccCCccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeE---EEe------cC---CCCCc
Q 026389          153 HVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNET---SIL------LD---SLFFA  220 (239)
Q Consensus       153 ~~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~---~~~------~~---~l~~p  220 (239)
                             .....+++.++| ++++-.                  +|.+..|++++++.   ..+      .+   +-...
T Consensus       163 -------~~Vs~v~WSpkG-~~vg~~------------------dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V  216 (388)
T 1xip_A          163 -------QNVTSFDVTNSQ-LAVLLK------------------DRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSP  216 (388)
T ss_dssp             -------ESEEEEEECSSE-EEEEET------------------TSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEE
T ss_pred             -------CCceEEEEcCCc-eEEEEc------------------CCcEEEEcCCCccccccceecCCcccccccCCCeeE
Confidence                   235689999999 555443                  46777778887774   233      11   23567


Q ss_pred             ceEEEcCCCCEEEE
Q 026389          221 NGVALSKDEDYLVV  234 (239)
Q Consensus       221 nGia~s~dg~~lyv  234 (239)
                      ..|++.++++++.+
T Consensus       217 ~sI~wl~~~~flv~  230 (388)
T 1xip_A          217 LSVTILSPQDFLAV  230 (388)
T ss_dssp             EEEEESSSSEEEEE
T ss_pred             EEEEEecCCeEEEE
Confidence            88999888876644

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=90.59  E-value=5.8  Score=33.69  Aligned_cols=96  Identities=9%  Similarity=0.013  Sum_probs=55.9

Q ss_pred             EEEeCCCeEEEEecC-CcEEEe---eec---cCcCccCeEEcC--------CCCEEEEeCCCCeEEEc--cCC--ceEEe
Q 026389           91 YTATRDGWIKRLHKN-GTWENW---KLI---GGDTLLGITTTQ--------ENEILVCDADKGLLKVT--EEG--VTVLA  151 (239)
Q Consensus        91 y~~~~~g~I~~~~~~-G~~~~~---~~~---~~~p~~Gl~~d~--------~G~L~v~d~~~g~~~v~--~~g--~~~l~  151 (239)
                      .+++.|+.|..|+.+ ++....   ...   .+.-+ .++|.+        ||+++++-...+.+++.  .++  ...+.
T Consensus       105 as~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~-~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~~~~  183 (393)
T 4gq1_A          105 ACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVN-DIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPILAGY  183 (393)
T ss_dssp             EEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEE-EEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEEEEE
T ss_pred             EEEeCCCcEEEEECCCCccceeeeecccCCCCCceE-EEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceeeeec
Confidence            355688988888853 332211   111   23345 678865        78888887778888886  344  22222


Q ss_pred             cccCCccccccccEEEcCCC-CEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCe
Q 026389          152 SHVNGSRINLADDLIAATDG-SIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNE  209 (239)
Q Consensus       152 ~~~~g~~~~~pn~l~vd~dG-~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~  209 (239)
                      .. .    .....+++.|+| ++.++-+.                 .|.|..||..+++
T Consensus       184 ~~-~----~~v~~v~~~p~~~~~l~~~~~-----------------d~~v~~wd~~t~~  220 (393)
T 4gq1_A          184 PL-S----SPGISVQFRPSNPNQLIVGER-----------------NGNIRIFDWTLNL  220 (393)
T ss_dssp             EC-S----SCEEEEEEETTEEEEEEEEET-----------------TSEEEEEETTCCC
T ss_pred             CC-C----CCcEEEEECCCCCceEEecCC-----------------CCEEEEEECCCCc
Confidence            21 1    224678889887 45555433                 4667777766543

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=90.41  E-value=10  Score=34.60  Aligned_cols=38  Identities=11%  Similarity=0.142  Sum_probs=23.9

Q ss_pred             CceEEEEeCCCCeEEEec--CCCCCcceEEEcCCCCEEEEE
Q 026389          197 HGKLLKYDPSLNETSILL--DSLFFANGVALSKDEDYLVVC  235 (239)
Q Consensus       197 ~g~v~~~d~~~~~~~~~~--~~l~~pnGia~s~dg~~lyva  235 (239)
                      .|.|+.||.++|+..--.  ..-...+-+.+..||+ +||+
T Consensus       506 dg~l~A~D~~tG~~lW~~~~~~g~~a~P~~y~~~G~-qYv~  545 (582)
T 1flg_A          506 DGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGE-QYLG  545 (582)
T ss_dssp             TSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTE-EEEE
T ss_pred             CCcEEEEECCCCCEEEEecCCCCcccCceEEEECCE-EEEE
Confidence            489999999888753222  2223344477777886 4544

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=90.38  E-value=1.7  Score=37.53  Aligned_cols=55  Identities=9%  Similarity=-0.041  Sum_probs=36.5

Q ss_pred             ccEEEcC---CCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeE-EEecCC---CCCcceEEEcCCCCEEEE
Q 026389          163 DDLIAAT---DGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNET-SILLDS---LFFANGVALSKDEDYLVV  234 (239)
Q Consensus       163 n~l~vd~---dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~-~~~~~~---l~~pnGia~s~dg~~lyv  234 (239)
                      +.+++++   +|.++++.+.                 .+.|..+|.++++. ..+..+   ....+.++|+|||+++.+
T Consensus       182 ~~l~fs~~~g~~~~LaSgS~-----------------D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs  243 (356)
T 2w18_A          182 TILTFAEVQGMQEALLGTTI-----------------MNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIV  243 (356)
T ss_dssp             CEEEEEEEETSTTEEEEEET-----------------TSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEE
T ss_pred             eeEEeeccCCCCceEEEecC-----------------CCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEE
Confidence            4566666   5677777554                 57888999998875 444322   234456789999987643

>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*

Probab=89.91  E-value=5.1  Score=38.16  Aligned_cols=146  Identities=16%  Similarity=0.219  Sum_probs=77.2

Q ss_pred             ceEEEcC--CCCEEEEeCCCeEEEEecCCc-EEEeeecc------CcCccCeEEcCC--CCEEEEeCC-CCeEEEccCC-
Q 026389           80 EDVCVDR--NGVLYTATRDGWIKRLHKNGT-WENWKLIG------GDTLLGITTTQE--NEILVCDAD-KGLLKVTEEG-  146 (239)
Q Consensus        80 e~ia~d~--~G~ly~~~~~g~I~~~~~~G~-~~~~~~~~------~~p~~Gl~~d~~--G~L~v~d~~-~g~~~v~~~g-  146 (239)
                      +.|++++  .+.+|++...+.|++=+..|+ |+......      .... .+++++.  +.+|++... .++++-...| 
T Consensus       124 ~~iav~p~~~~~v~~g~~~~gl~~S~DgG~TW~~~~~~~~~~~~~~~~~-~i~~~p~~~~~~~~~~~~~~~v~~S~DgG~  202 (789)
T 1sqj_A          124 ERLAVNPFNSNEVWMGTRTEGIWKSSDRAKTWTNVTSIPDAFTNGIGYT-SVIFDPERNGTIYASATAPQGMYVTHDGGV  202 (789)
T ss_dssp             CCEEEETTEEEEEEEECSSSCEEEESSTTSSCEEETTSCCCCSTTTCEE-EEEECTTSTTCEEEEESSTTCEEEESSTTS
T ss_pred             eEEEEcCCCCCEEEEEeccCCEEEECCCCcccCCCccCccccCCCCCeE-EEEECCCCCCEEEEEEcCCCeEEEEcCCCc
Confidence            5689987  358898876677887654454 55433210      1112 4566753  378988765 4555444445 


Q ss_pred             -ceEEecccCCc-------------cccccccEEEcC-CCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEE
Q 026389          147 -VTVLASHVNGS-------------RINLADDLIAAT-DGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETS  211 (239)
Q Consensus       147 -~~~l~~~~~g~-------------~~~~pn~l~vd~-dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~  211 (239)
                       -+.+.....+.             .+..+..+++++ +++||++-...+   ..+      ....+.||+.+-.+..-+
T Consensus       203 TW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~~---~p~------~g~~g~l~~S~DgG~tW~  273 (789)
T 1sqj_A          203 SWEPVAGQPSSWLNRTTGAFPDKKPASIAPQPMKVALTPNFLYVTYADYP---GPW------GVTFGEVWRQNRTSGAWD  273 (789)
T ss_dssp             SCEECTTCCCSCCHHHHHTSTTCCCSSSSCEEEEEEECSSEEEEEEESSC---SSS------CCCCCCEEEEETTTCCEE
T ss_pred             CcccCCCCcCccccccccccCcccccccccceeEEcCCCCeEEEEEecCC---CCC------CCCCceEEEEeCCCCceE
Confidence             23332111110             112237888888 678988742210   000      113578888876555544


Q ss_pred             EecCCC-----------CC----cceEEEcCC-CCEEEEE
Q 026389          212 ILLDSL-----------FF----ANGVALSKD-EDYLVVC  235 (239)
Q Consensus       212 ~~~~~l-----------~~----pnGia~s~d-g~~lyva  235 (239)
                      .+....           .+    -.+|+++|. .+.||++
T Consensus       274 ~~~~~~~~~~p~~~~~~~~~~~g~~~lav~p~~~~~v~~~  313 (789)
T 1sqj_A          274 DITPRVGNSSPAPYNNQTFPAGGFCGLSVDATNPNRLVVI  313 (789)
T ss_dssp             ECCCCTTTEESCCCSSCCSCCCEEEEEEEETTEEEEEEEE
T ss_pred             ECcCCCCccccccccccccccCceEEEEECCCCCCEEEEE
Confidence            443211           11    136777763 4567765

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=89.50  E-value=0.2  Score=43.17  Aligned_cols=98  Identities=10%  Similarity=0.112  Sum_probs=45.5

Q ss_pred             CCCCEEEEeCCCeEEEEec-CCcEEEeeeccCcCccCeEEcCCCCEEEEeCCCCeEEEc-cCC-ceEEecccCCcccccc
Q 026389           86 RNGVLYTATRDGWIKRLHK-NGTWENWKLIGGDTLLGITTTQENEILVCDADKGLLKVT-EEG-VTVLASHVNGSRINLA  162 (239)
Q Consensus        86 ~~G~ly~~~~~g~I~~~~~-~G~~~~~~~~~~~p~~Gl~~d~~G~L~v~d~~~g~~~v~-~~g-~~~l~~~~~g~~~~~p  162 (239)
                      .++.+|+++.+++|+.+|. +|+.. |........ ...- .++.+|++.....++.++ .+| ...-... .+     .
T Consensus        91 ~~~~v~~g~~dg~v~a~D~~tG~~~-w~~~~~~~~-~~~p-~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~-~~-----~  161 (369)
T 2hz6_A           91 SDGILYMGKKQDIWYVIDLLTGEKQ-QTLSSAFAD-SLSP-STSLLYLGRTEYTITMYDTKTRELRWNATY-FD-----Y  161 (369)
T ss_dssp             ----CCCCEEEEEEEEECCC-------------------------EEEEEEEEEEECCCSSSSSCCCEEEE-EE-----E
T ss_pred             cCCEEEEEeCCCEEEEEECCCCcEE-EEecCCCcc-cccc-cCCEEEEEecCCEEEEEECCCCCEEEeEec-cc-----c
Confidence            4678898888899999996 46542 221111111 1111 345788876555566667 466 3221110 00     1


Q ss_pred             ccEEEcC----CCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeE
Q 026389          163 DDLIAAT----DGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNET  210 (239)
Q Consensus       163 n~l~vd~----dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~  210 (239)
                      ...+++.    ++.+|++..                  .|.|+.+|.++|+.
T Consensus       162 ~~~~~~~~~~~~~~v~~~~~------------------dg~v~a~d~~tG~~  195 (369)
T 2hz6_A          162 AASLPEDDVDYKMSHFVSNG------------------DGLVVTVDSESGDV  195 (369)
T ss_dssp             CCBCCCCCTTCCCCEEEEET------------------SCEEEEECTTTCCE
T ss_pred             cCccccCCccccceEEEECC------------------CCEEEEEECCCCcE
Confidence            1223333    367888764                  37899999887765

>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*

Probab=87.29  E-value=20  Score=34.08  Aligned_cols=99  Identities=14%  Similarity=0.169  Sum_probs=55.6

Q ss_pred             CcceEEEcC--CCCEEEEeCCCeEEEEecCCc-EEEeeecc-------CcCccCeEEcCC--CCEEEEeCC-C----CeE
Q 026389           78 GPEDVCVDR--NGVLYTATRDGWIKRLHKNGT-WENWKLIG-------GDTLLGITTTQE--NEILVCDAD-K----GLL  140 (239)
Q Consensus        78 gPe~ia~d~--~G~ly~~~~~g~I~~~~~~G~-~~~~~~~~-------~~p~~Gl~~d~~--G~L~v~d~~-~----g~~  140 (239)
                      .-.+|++++  .+.+|++...+.|+|-+..|+ |+......       .... .|++|+.  +.+|++... .    +.+
T Consensus        16 ~i~~i~~~p~~~~~~~a~~~~ggv~rS~DgG~tW~~~~~~~~~~~~~~~~i~-~ia~dp~~~~~i~~~~g~~~~~~~~~v   94 (789)
T 1sqj_A           16 YITGIVAHPKTKDLLYARTDIGGAYRWDAGTSKWIPLNDFIEAQDMNIMGTE-SIALDPNNPDRLYLAQGRYVGDEWAAF   94 (789)
T ss_dssp             CEEEEEECSSSTTCEEEEESSSCEEEEETTTTEEEESCTTCCGGGGGGCSEE-EEEEETTEEEEEEEEECSCTTSSCCEE
T ss_pred             cEEEEEECCCCCCEEEEEecCCCEEEecCCCCCeeECccCCCcccccCCcee-EEEECCCCCCEEEEEeCccCCCcccEE
Confidence            456788987  378999988889999876664 55433211       1234 6888864  468887532 2    344


Q ss_pred             EEc-cCCc--eEEecccC--C-ccc-cccccEEEcCC--CCEEEEe
Q 026389          141 KVT-EEGV--TVLASHVN--G-SRI-NLADDLIAATD--GSIYFSV  177 (239)
Q Consensus       141 ~v~-~~g~--~~l~~~~~--g-~~~-~~pn~l~vd~d--G~iy~td  177 (239)
                      ... ..|.  +.+.....  + .+- .....+++++.  +.+|+..
T Consensus        95 ~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~~~v~~g~  140 (789)
T 1sqj_A           95 YVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGT  140 (789)
T ss_dssp             EEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEEETTEEEEEEEEC
T ss_pred             EEECCCCCcceeccCCcccCccCCCccceeEEEEcCCCCCEEEEEe
Confidence            444 4452  22221110  0 000 12346888874  4677754

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=86.57  E-value=6.3  Score=36.40  Aligned_cols=106  Identities=11%  Similarity=0.135  Sum_probs=61.1

Q ss_pred             EeeeccCcCccCeEEcCCCC-EEEEeCCCCeEEE-c-c-------C---C-ceEEecc-cCCccccccccEEEcCCCCEE
Q 026389          110 NWKLIGGDTLLGITTTQENE-ILVCDADKGLLKV-T-E-------E---G-VTVLASH-VNGSRINLADDLIAATDGSIY  174 (239)
Q Consensus       110 ~~~~~~~~p~~Gl~~d~~G~-L~v~d~~~g~~~v-~-~-------~---g-~~~l~~~-~~g~~~~~pn~l~vd~dG~iy  174 (239)
                      .+......|+ |+.+++||+ ++++.-....+.+ + .       +   . ...+..+ .-|   ..|--.++|++|+.|
T Consensus       317 ~~iP~pksPH-Gv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~G---lGPlHt~Fd~~G~aY  392 (638)
T 3sbq_A          317 RYVPVPKNPH-GCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELG---LGPLHTTFDGRGNAY  392 (638)
T ss_dssp             EEEEESSSCC-CEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCC---SCEEEEEECSSSEEE
T ss_pred             EEEeCCCCCc-ceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCC---CcccEEEECCCCceE
Confidence            3445667899 999999996 5555444444443 2 1       1   1 1122222 122   457889999999999


Q ss_pred             EEeCCCCcCcccccccceeecCCceEEEEeCCCC----------eEEEecCCCCCcceEEE------cCCCCEEEEEe
Q 026389          175 FSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLN----------ETSILLDSLFFANGVAL------SKDEDYLVVCE  236 (239)
Q Consensus       175 ~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~----------~~~~~~~~l~~pnGia~------s~dg~~lyvad  236 (239)
                      .|-.-                 ..+|.+|+.+..          .+..-++.-+.|-.+.-      .+||++|+.-+
T Consensus       393 Ttlfi-----------------dSqvvkWni~~a~~~~~g~~~~~v~~k~dv~YqpGH~~~~~get~~~dGk~lv~ln  453 (638)
T 3sbq_A          393 TTLFI-----------------DSQVVKWNMEEAVRAYKGEKVNYIKQKLDVHYQPGHLHASLCETNEADGKWLVALS  453 (638)
T ss_dssp             EEETT-----------------TTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCSCEEEEEE
T ss_pred             eeeee-----------------cceEEEEeccHHHHHhcCccCCeeeeccccccCCcccccCCCccCCCCccEEEEec
Confidence            98643                 234556554311          22222344556655544      68898887644

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=85.25  E-value=12  Score=34.45  Aligned_cols=109  Identities=12%  Similarity=0.026  Sum_probs=60.5

Q ss_pred             cEEEeeeccCcCccCeEEcC-CCCEEEEeCCC------------CeEEEcc-CC-ceEEecccCCccccccccEEEcCCC
Q 026389          107 TWENWKLIGGDTLLGITTTQ-ENEILVCDADK------------GLLKVTE-EG-VTVLASHVNGSRINLADDLIAATDG  171 (239)
Q Consensus       107 ~~~~~~~~~~~p~~Gl~~d~-~G~L~v~d~~~------------g~~~v~~-~g-~~~l~~~~~g~~~~~pn~l~vd~dG  171 (239)
                      +|+........+. ..++.+ +|+|||.-...            .+..+|. .+ .+.+... ....-.+..++++..+|
T Consensus       177 ~W~~~~~~P~~~~-~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~-~~~~~~~~~~~~~~~~g  254 (656)
T 1k3i_A          177 RWGPTIDLPIVPA-AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVT-VTKHDMFCPGISMDGNG  254 (656)
T ss_dssp             EEEEEEECSSCCS-EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEE-ECSCCCSSCEEEECTTS
T ss_pred             eeeeeccCCCCce-eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCccc-CCCCCCccccccCCCCC
Confidence            3433333334556 677766 88999974211            1233442 33 2222111 11122345678888999


Q ss_pred             CEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecCCCCCc---ceEEEcCCCCEEEEE
Q 026389          172 SIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFA---NGVALSKDEDYLVVC  235 (239)
Q Consensus       172 ~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~~l~~p---nGia~s~dg~~lyva  235 (239)
                      .||+.-...                ...+++||+.+++-+.+. .+..+   .++++-+||+ |||.
T Consensus       255 ~lyv~GG~~----------------~~~v~~yd~~t~~W~~~~-~~~~~R~~~s~~~~~dg~-iyv~  303 (656)
T 1k3i_A          255 QIVVTGGND----------------AKKTSLYDSSSDSWIPGP-DMQVARGYQSSATMSDGR-VFTI  303 (656)
T ss_dssp             CEEEECSSS----------------TTCEEEEEGGGTEEEECC-CCSSCCSSCEEEECTTSC-EEEE
T ss_pred             CEEEeCCCC----------------CCceEEecCcCCceeECC-CCCccccccceEEecCCe-EEEE
Confidence            999986531                236899999888766653 23322   3455666777 5553

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=82.45  E-value=3.3  Score=39.03  Aligned_cols=99  Identities=12%  Similarity=0.182  Sum_probs=54.7

Q ss_pred             CeEEc-CCCC--EEEEeCCC----CeEEEc-cCCceEEecccCCccccccccEEEcCCC-CEEEEeCCCCcCcccccccc
Q 026389          121 GITTT-QENE--ILVCDADK----GLLKVT-EEGVTVLASHVNGSRINLADDLIAATDG-SIYFSVASTKFGLHNWGLDL  191 (239)
Q Consensus       121 Gl~~d-~~G~--L~v~d~~~----g~~~v~-~~g~~~l~~~~~g~~~~~pn~l~vd~dG-~iy~td~~~~~~~~~~~~~~  191 (239)
                      +.++. +||+  .|+.+...    .++.++ ..|.+.+....++    ...+++.++|| .||++.....          
T Consensus       178 ~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~~----~~~~~~WspDg~~l~y~~~d~~----------  243 (751)
T 2xe4_A          178 EVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVSG----TNGEIVWGPDHTSLFYVTKDET----------  243 (751)
T ss_dssp             EEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEEE----ECSCCEECSSTTEEEEEEECTT----------
T ss_pred             eeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCccccC----ceeeEEEecCCCEEEEEEECCC----------
Confidence            57889 9996  34455431    144455 3331222111111    13578899998 6777743210          


Q ss_pred             eeecCCceEEEEeCCCCeE--EEe-c-CCCCCcceEEEcCCCCEEEEEe
Q 026389          192 LEAKPHGKLLKYDPSLNET--SIL-L-DSLFFANGVALSKDEDYLVVCE  236 (239)
Q Consensus       192 ~e~~~~g~v~~~d~~~~~~--~~~-~-~~l~~pnGia~s~dg~~lyvad  236 (239)
                         ....+||+++..+++.  +.+ . ..-.+-.++.+|+||++|+++.
T Consensus       244 ---~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~  289 (751)
T 2xe4_A          244 ---LRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGS  289 (751)
T ss_dssp             ---CCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEE
T ss_pred             ---CCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEe
Confidence               0013789998876532  222 1 2223345788999999987764

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=80.77  E-value=1.6  Score=37.36  Aligned_cols=32  Identities=16%  Similarity=0.182  Sum_probs=23.3

Q ss_pred             CCCCEEEEeCCCeEEEEec-CCcEEEeeeccCcC
Q 026389           86 RNGVLYTATRDGWIKRLHK-NGTWENWKLIGGDT  118 (239)
Q Consensus        86 ~~G~ly~~~~~g~I~~~~~-~G~~~~~~~~~~~p  118 (239)
                      .+|.+|+++.+|+++.++. +|+.. |....+.|
T Consensus       110 ~~g~Vy~Gs~~g~l~ald~~tG~~~-W~~~~~~~  142 (339)
T 2be1_A          110 EDEKVYTGSMRTIMYTINMLNGEII-SAFGPGSK  142 (339)
T ss_dssp             CCEEEEECEEEEEEEEEETTTCCEE-EEESTTCB
T ss_pred             cCCEEEEEecCCEEEEEECCCCcEE-EEEecCCC
Confidence            5789999999999999996 67653 33333333

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	239
d1v04a_	340	b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PO	2e-16
d2p4oa1	302	b.68.6.3 (A:4-305) Hypothetical protein All0351 ho	0.004

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 340

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

 Score = 75.1 bits (184), Expect = 2e-16
 Identities = 33/202 (16%), Positives = 69/202 (34%), Gaps = 34/202 (16%)

Query: 70  RLGEGILNGPEDVCVDRNGVLYTATRDGW----------------IKRLHKNGTWENWKL 113
            L +GI NG ED+ +  NG+ + ++   +                +    K       ++
Sbjct: 28  NLVKGIDNGSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEI 87

Query: 114 IGGDTL------LGITTTQENE----ILVCDADKG------LLKVTEEGVTVLASHVNGS 157
           IG           GI+T  +++    +LV +               EE   +    +   
Sbjct: 88  IGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHK 147

Query: 158 RINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSL 217
            +   +D++A      Y +        +    ++        +  Y P  N+  ++ +  
Sbjct: 148 LLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP--NDVRVVAEGF 205

Query: 218 FFANGVALSKDEDYLVVCETFK 239
            FANG+ +S D  Y+ + E   
Sbjct: 206 DFANGINISPDGKYVYIAELLA 227

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} Length = 302

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

 Score = 35.4 bits (80), Expect = 0.004
 Identities = 14/88 (15%), Positives = 32/88 (36%), Gaps = 5/88 (5%)

Query: 50  LPPASSASLIPTTSDIQSVTRLGEGILNGPEDVCVDRNGVLY-TATRDGWIKRLHKNGTW 108
           LPP  +   I      + +T          E++    +G ++ T    G I  +  +G  
Sbjct: 4   LPPIYADKPIELAP-AKIITSFPVN--TFLENLASAPDGTIFVTNHEVGEIVSITPDGNQ 60

Query: 109 ENWKLIGGDTLLGITTTQENEILVCDAD 136
           +    + G  + G+  T   +++    +
Sbjct: 61  QIHATVEG-KVSGLAFTSNGDLVATGWN 87

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	239
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	99.91
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	99.88
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	99.78
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	99.75
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	99.73
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.71
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.7
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.69
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	99.65
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	99.61
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	99.59
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	99.57
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	99.52
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	99.52
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	99.49
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	99.46
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.44
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	99.14
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	98.97
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	98.97
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	98.84
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	98.78
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	98.76
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	98.71
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	98.71
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	98.62
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	98.52
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	98.49
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	98.47
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	98.43
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	98.35
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	98.32
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	98.31
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	98.27
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	98.25
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	98.25
d1tbga_	340	beta1-subunit of the signal-transducing G protein	98.11
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	98.06
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	98.05
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	98.02
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	98.02
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	97.96
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	97.95
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	97.92
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	97.87
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	97.86
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	97.81
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	97.8
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	97.74
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	97.71
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	97.6
d1tbga_	340	beta1-subunit of the signal-transducing G protein	97.55
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	97.53
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	97.51
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	97.43
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	97.33
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	97.3
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	97.05
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	97.0
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	96.81
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	96.63
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	96.56
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	96.3
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	96.21
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	96.18
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	96.17
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	96.08
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	96.02
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	95.97
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	95.95
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	95.87
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	95.8
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	95.64
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	95.63
d1tl2a_	235	Tachylectin-2 {Japanese horseshoe crab (Tachypleus	95.23
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	95.14
d1tl2a_	235	Tachylectin-2 {Japanese horseshoe crab (Tachypleus	94.7
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	94.51
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	94.51
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	94.35
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	94.32
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	94.0
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	93.72
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	92.55
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	92.11
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	91.22
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	91.07
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	88.82
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	88.05
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	81.8
d2ebsa1	427	Oligoxyloglucan reducing end-specific cellobiohydr	80.71

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=99.91  E-value=1.2e-23  Score=180.14  Aligned_cols=166  Identities=21%  Similarity=0.340  Sum_probs=130.1

Q ss_pred             ceEeccCCcCCcceEEEcCCCCEEEEeC--------CCeEEEEecCC-cEEEeee-----ccCcCccCeEEcCCC-CEEE
Q 026389           68 VTRLGEGILNGPEDVCVDRNGVLYTATR--------DGWIKRLHKNG-TWENWKL-----IGGDTLLGITTTQEN-EILV  132 (239)
Q Consensus        68 ~~~l~~g~~~gPe~ia~d~~G~ly~~~~--------~g~I~~~~~~G-~~~~~~~-----~~~~p~~Gl~~d~~G-~L~v  132 (239)
                      .+++.++ +.+|||+++|++|++|+.+.        +|+|+|+++++ +.+.+..     ..+.|+ |++++++| +|||
T Consensus        10 ~~~v~~~-~~g~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~-Gl~~~~dg~~l~v   87 (314)
T d1pjxa_          10 FTKVTED-IPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPA-GCQCDRDANQLFV   87 (314)
T ss_dssp             CEEEECC-CTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEE-EEEECSSSSEEEE
T ss_pred             eEEeecC-CCCCeEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcce-eEEEeCCCCEEEE
Confidence            4677777 89999999999999998752        47899999865 4443322     246799 99999998 4899


Q ss_pred             EeCCCCeEEEccCC--ceEEecccCCccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeE
Q 026389          133 CDADKGLLKVTEEG--VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNET  210 (239)
Q Consensus       133 ~d~~~g~~~v~~~g--~~~l~~~~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~  210 (239)
                      ++...++++++.+|  .+++....++.+++.|||+++|++|++||||+...+....  .......+.|+||+++++ ++.
T Consensus        88 ad~~~~i~~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~--~~~~~~~~~G~v~~~~~d-g~~  164 (314)
T d1pjxa_          88 ADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPAD--YTRSMQEKFGSIYCFTTD-GQM  164 (314)
T ss_dssp             EETTTEEEEEETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSC--CCBTTSSSCEEEEEECTT-SCE
T ss_pred             EECCCeEEEEeCCCcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCccccc--ccceeccCCceEEEEeec-Cce
Confidence            99888899999776  4444556678889999999999999999999874432222  112223467999999997 567


Q ss_pred             EEecCCCCCcceEEEcCCCC----EEEEEeCC
Q 026389          211 SILLDSLFFANGVALSKDED----YLVVCETF  238 (239)
Q Consensus       211 ~~~~~~l~~pnGia~s~dg~----~lyvadt~  238 (239)
                      ..+..++.+||||++++|++    +|||+|+.
T Consensus       165 ~~~~~~~~~pNGi~~~~d~d~~~~~lyv~d~~  196 (314)
T d1pjxa_         165 IQVDTAFQFPNGIAVRHMNDGRPYQLIVAETP  196 (314)
T ss_dssp             EEEEEEESSEEEEEEEECTTSCEEEEEEEETT
T ss_pred             eEeeCCcceeeeeEECCCCCcceeEEEEEeec
Confidence            77788899999999999876    89999985

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.88  E-value=8.5e-22  Score=168.57  Aligned_cols=148  Identities=24%  Similarity=0.372  Sum_probs=118.3

Q ss_pred             CCcceEEEcCCCCEEEEe-CCCeEEEEecCCc--EEEeeeccCcCccCeEEcCCCCEEEEeCC-----CCeEEEccCC--
Q 026389           77 NGPEDVCVDRNGVLYTAT-RDGWIKRLHKNGT--WENWKLIGGDTLLGITTTQENEILVCDAD-----KGLLKVTEEG--  146 (239)
Q Consensus        77 ~gPe~ia~d~~G~ly~~~-~~g~I~~~~~~G~--~~~~~~~~~~p~~Gl~~d~~G~L~v~d~~-----~g~~~v~~~g--  146 (239)
                      ...||++||++|+||+++ .+++|+|++++++  ...+....+.|+ ||+++++|+||||+..     .+++.++.++  
T Consensus        40 ~~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~-gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~~  118 (319)
T d2dg1a1          40 LQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPA-AIKIHKDGRLFVCYLGDFKSTGGIFAATENGDN  118 (319)
T ss_dssp             CCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEE-EEEECTTSCEEEEECTTSSSCCEEEEECTTSCS
T ss_pred             cCcEeCEECCCCCEEEEECCCCEEEEEECCCCeEEEEEeCCCCCee-EEEECCCCCEEEEecCCCccceeEEEEcCCCce
Confidence            455999999999999877 8899999999875  344456678899 9999999999999853     2356666544  


Q ss_pred             ceEEecccCCccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecCCCCCcceEEEc
Q 026389          147 VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALS  226 (239)
Q Consensus       147 ~~~l~~~~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~~l~~pnGia~s  226 (239)
                      ...+...  ......|||++++++|++||+|....           ...+.|.+++++++++.++.+..++..||||+|+
T Consensus       119 ~~~~~~~--~~~~~~~nd~~~d~~G~l~vtd~~~~-----------~~~~~g~v~~~~~dg~~~~~~~~~~~~pnGia~s  185 (319)
T d2dg1a1         119 LQDIIED--LSTAYCIDDMVFDSKGGFYFTDFRGY-----------STNPLGGVYYVSPDFRTVTPIIQNISVANGIALS  185 (319)
T ss_dssp             CEEEECS--SSSCCCEEEEEECTTSCEEEEECCCB-----------TTBCCEEEEEECTTSCCEEEEEEEESSEEEEEEC
T ss_pred             eeeeccC--CCcccCCcceeEEeccceeecccccc-----------cccCcceeEEEecccceeEEEeeccceeeeeeec
Confidence            4444332  23457799999999999999997621           1224688999999988888888999999999999


Q ss_pred             CCCCEEEEEeCC
Q 026389          227 KDEDYLVVCETF  238 (239)
Q Consensus       227 ~dg~~lyvadt~  238 (239)
                      +||++|||+|+.
T Consensus       186 ~dg~~lyvad~~  197 (319)
T d2dg1a1         186 TDEKVLWVTETT  197 (319)
T ss_dssp             TTSSEEEEEEGG
T ss_pred             cccceEEEeccc
Confidence            999999999974

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=99.78  E-value=4e-18  Score=145.30  Aligned_cols=145  Identities=14%  Similarity=0.179  Sum_probs=113.1

Q ss_pred             cCCcceEEEcCCCCEEEEeC----------------CCeEEEEecCCcEEEeeeccCcCccCeEEcCCC-----CEEEEe
Q 026389           76 LNGPEDVCVDRNGVLYTATR----------------DGWIKRLHKNGTWENWKLIGGDTLLGITTTQEN-----EILVCD  134 (239)
Q Consensus        76 ~~gPe~ia~d~~G~ly~~~~----------------~g~I~~~~~~G~~~~~~~~~~~p~~Gl~~d~~G-----~L~v~d  134 (239)
                      +.+|.++++|++|+||+++.                .|+|++++++|+...+......|+ |+++++++     .|||+|
T Consensus       116 ~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~dg~~~~~~~~~~~pN-Gi~~~~d~d~~~~~lyv~d  194 (314)
T d1pjxa_         116 MQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDGQMIQVDTAFQFPN-GIAVRHMNDGRPYQLIVAE  194 (314)
T ss_dssp             CBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTSCEEEEEEEESSEE-EEEEEECTTSCEEEEEEEE
T ss_pred             cCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEeecCceeEeeCCcceee-eeEECCCCCcceeEEEEEe
Confidence            45799999999999998862                368999999998877777778899 99998765     499999


Q ss_pred             CCCCeE-EEc--cCC-c--eEEecccCCccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCC
Q 026389          135 ADKGLL-KVT--EEG-V--TVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLN  208 (239)
Q Consensus       135 ~~~g~~-~v~--~~g-~--~~l~~~~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~  208 (239)
                      ...+.+ +++  .+| .  ..+.....+.....|+++++|++|+||+++..                 .++|++|||+++
T Consensus       195 ~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~-----------------~g~I~~~dp~~g  257 (314)
T d1pjxa_         195 TPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWG-----------------SSHIEVFGPDGG  257 (314)
T ss_dssp             TTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEET-----------------TTEEEEECTTCB
T ss_pred             ecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEEcC-----------------CCEEEEEeCCCC
Confidence            876654 444  455 2  22222334444557999999999999999865                 589999999987


Q ss_pred             eEEE-ecCCCCCcceEEEcCCCCEEEEEeCC
Q 026389          209 ETSI-LLDSLFFANGVALSKDEDYLVVCETF  238 (239)
Q Consensus       209 ~~~~-~~~~l~~pnGia~s~dg~~lyvadt~  238 (239)
                      ++.. +......|+++||.+|+++|||+++.
T Consensus       258 ~~~~~i~~p~~~~t~~afg~d~~~lyVt~~~  288 (314)
T d1pjxa_         258 QPKMRIRCPFEKPSNLHFKPQTKTIFVTEHE  288 (314)
T ss_dssp             SCSEEEECSSSCEEEEEECTTSSEEEEEETT
T ss_pred             EEEEEEECCCCCEEEEEEeCCCCEEEEEECC
Confidence            6543 44456789999999999999999864

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.75  E-value=1.9e-17  Score=139.83  Aligned_cols=155  Identities=15%  Similarity=0.152  Sum_probs=121.4

Q ss_pred             eEeccCCcCCcceEEEcC-CCCEEEEe-CCCeEEEEecCCcEEEeeeccCcCccCeEEcCCCCEEEEeCCCCeEEEc-cC
Q 026389           69 TRLGEGILNGPEDVCVDR-NGVLYTAT-RDGWIKRLHKNGTWENWKLIGGDTLLGITTTQENEILVCDADKGLLKVT-EE  145 (239)
Q Consensus        69 ~~l~~g~~~gPe~ia~d~-~G~ly~~~-~~g~I~~~~~~G~~~~~~~~~~~p~~Gl~~d~~G~L~v~d~~~g~~~v~-~~  145 (239)
                      +.+......--||..||+ +|.||+.+ .+++|+|+++++...........+. +++++.+|+||++.. .|+++++ .+
T Consensus        10 ~~~~~~~~~LgEgp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~~~~~~~~~~-~i~~~~dg~l~va~~-~gl~~~d~~t   87 (295)
T d2ghsa1          10 RVLDETPMLLGEGPTFDPASGTAWWFNILERELHELHLASGRKTVHALPFMGS-ALAKISDSKQLIASD-DGLFLRDTAT   87 (295)
T ss_dssp             EEEECSCCSBEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEEEECSSCEE-EEEEEETTEEEEEET-TEEEEEETTT
T ss_pred             EEEcCCCCeeeeCCeEECCCCEEEEEECCCCEEEEEECCCCeEEEEECCCCcE-EEEEecCCCEEEEEe-CccEEeeccc
Confidence            444444343447779996 78899776 8899999998654433445566788 999999999999975 6899999 56


Q ss_pred             C-ceEEecccCCccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecCCCCCcceEE
Q 026389          146 G-VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVA  224 (239)
Q Consensus       146 g-~~~l~~~~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~~l~~pnGia  224 (239)
                      | .+.+.....+.+.+.+||+++|++|++||+++...           +..+.|.+++++.  ++++.+..++..|||++
T Consensus        88 g~~~~l~~~~~~~~~~~~nd~~vd~~G~iw~~~~~~~-----------~~~~~g~l~~~~~--g~~~~~~~~~~~~Ng~~  154 (295)
T d2ghsa1          88 GVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRK-----------AETGAGSIYHVAK--GKVTKLFADISIPNSIC  154 (295)
T ss_dssp             CCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETT-----------CCTTCEEEEEEET--TEEEEEEEEESSEEEEE
T ss_pred             ceeeEEeeeecCCCcccceeeEECCCCCEEEEecccc-----------ccccceeEeeecC--CcEEEEeeccCCcceee
Confidence            7 77777666667778899999999999999986521           1223578888864  68888888999999999


Q ss_pred             EcCCCCEEEEEeCC
Q 026389          225 LSKDEDYLVVCETF  238 (239)
Q Consensus       225 ~s~dg~~lyvadt~  238 (239)
                      +++|++.+|++||.
T Consensus       155 ~s~d~~~l~~~dt~  168 (295)
T d2ghsa1         155 FSPDGTTGYFVDTK  168 (295)
T ss_dssp             ECTTSCEEEEEETT
T ss_pred             ecCCCceEEEeecc
Confidence            99999999999985

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=99.73  E-value=2.3e-17  Score=142.33  Aligned_cols=168  Identities=21%  Similarity=0.313  Sum_probs=118.0

Q ss_pred             cceEeccCCcCCcceEEEcCCCCEEEEeC-------------CCeEEEEecCC---cEEEeeec-------cCcCccCeE
Q 026389           67 SVTRLGEGILNGPEDVCVDRNGVLYTATR-------------DGWIKRLHKNG---TWENWKLI-------GGDTLLGIT  123 (239)
Q Consensus        67 ~~~~l~~g~~~gPe~ia~d~~G~ly~~~~-------------~g~I~~~~~~G---~~~~~~~~-------~~~p~~Gl~  123 (239)
                      +.+.+. |...|||+|+++++|.+|+++.             .|.|+.+|.+.   +...+...       ..+|+ ||.
T Consensus        26 ~C~~i~-g~~~G~EDi~~~~dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~Ph-Gi~  103 (340)
T d1v04a_          26 NCNLVK-GIDNGSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPH-GIS  103 (340)
T ss_dssp             SCEECT-TCCSCCCEEEECTTSEEEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEE-EEE
T ss_pred             CceEcC-CCCCCcceEEECCCCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCCCCcceecc-cee
Confidence            344443 4467999999999999986652             38899988532   33332221       25789 987


Q ss_pred             E--cCCC--CEEEEeCC--CCeE---EEccCC-ceEEecccCCccccccccEEEcCCCCEEEEeCCCCcCccccccccee
Q 026389          124 T--TQEN--EILVCDAD--KGLL---KVTEEG-VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLE  193 (239)
Q Consensus       124 ~--d~~G--~L~v~d~~--~g~~---~v~~~g-~~~l~~~~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e  193 (239)
                      +  +.+|  +|||.++.  ...+   .++.++ .......+.+..+..|||+++..+|.+|+|+............+.+.
T Consensus       104 l~~~~dg~~~L~vvnH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~  183 (340)
T d1v04a_         104 TFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHL  183 (340)
T ss_dssp             EEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHT
T ss_pred             EEEcCCCcEEEEEEeccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCCCEEEecCccCcChhhhhhhHhh
Confidence            6  4566  58888873  3344   334444 33344456677888999999999999999986521111111223345


Q ss_pred             ecCCceEEEEeCCCCeEEEecCCCCCcceEEEcCCCCEEEEEeCC
Q 026389          194 AKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCETF  238 (239)
Q Consensus       194 ~~~~g~v~~~d~~~~~~~~~~~~l~~pnGia~s~dg~~lyvadt~  238 (239)
                      +.+.|.|+.||+  ++.+++++++.+||||++++|+++|||+||.
T Consensus       184 ~~~~g~v~~~~~--~~~~~~~~~l~~pNGI~~s~d~~~lyVa~t~  226 (340)
T d1v04a_         184 GLAWSFVTYYSP--NDVRVVAEGFDFANGINISPDGKYVYIAELL  226 (340)
T ss_dssp             TCCCEEEEEECS--SCEEEEEEEESSEEEEEECTTSSEEEEEEGG
T ss_pred             cCCceeEEEEcC--CceEEEcCCCCccceeEECCCCCEEEEEeCC
Confidence            677899999986  5678888999999999999999999999985

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.71  E-value=8.1e-17  Score=135.70  Aligned_cols=139  Identities=17%  Similarity=0.227  Sum_probs=110.3

Q ss_pred             CCcceEEEcCCCCEEEEe-CCCeEEEEecCCcEEEeeeccCcCccCeEEcCCCCEEEEeCCCCe-EEEc---cCC-ceEE
Q 026389           77 NGPEDVCVDRNGVLYTAT-RDGWIKRLHKNGTWENWKLIGGDTLLGITTTQENEILVCDADKGL-LKVT---EEG-VTVL  150 (239)
Q Consensus        77 ~gPe~ia~d~~G~ly~~~-~~g~I~~~~~~G~~~~~~~~~~~p~~Gl~~d~~G~L~v~d~~~g~-~~v~---~~g-~~~l  150 (239)
                      ..+|++|+++||+||+++ .+++|++++++|+.+.+....+.|. |++++++|+|||++...+. ..++   ..+ .+.+
T Consensus        28 ~~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g~~~~~~~~~~~~~-gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~~  106 (302)
T d2p4oa1          28 TFLENLASAPDGTIFVTNHEVGEIVSITPDGNQQIHATVEGKVS-GLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETL  106 (302)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEECTTCCEEEEEECSSEEE-EEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEE
T ss_pred             CCcCCEEECCCCCEEEEeCCCCEEEEEeCCCCEEEEEcCCCCcc-eEEEcCCCCeEEEecCCceEEEEEecccccceeec
Confidence            359999999999999888 7899999999999888888889999 9999999999999866543 3444   244 5555


Q ss_pred             ecccCCccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEec-----------CCCCC
Q 026389          151 ASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILL-----------DSLFF  219 (239)
Q Consensus       151 ~~~~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~-----------~~l~~  219 (239)
                      .....   ...+|+++++++|++|++++.                 .++++++|+.++......           .....
T Consensus       107 ~~~~~---~~~~n~i~~~~~g~~~v~~~~-----------------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (302)
T d2p4oa1         107 LTLPD---AIFLNGITPLSDTQYLTADSY-----------------RGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPA  166 (302)
T ss_dssp             EECTT---CSCEEEEEESSSSEEEEEETT-----------------TTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCS
T ss_pred             cccCC---ccccceeEEccCCCEEeeccc-----------------cccceeeeccCCcceeEecCCccceeeccCcccc
Confidence            44333   356999999999999999976                 578999999877765543           22456


Q ss_pred             cceEEEcCCCCEEEEEeCC
Q 026389          220 ANGVALSKDEDYLVVCETF  238 (239)
Q Consensus       220 pnGia~s~dg~~lyvadt~  238 (239)
                      +||++++  ++++|++++.
T Consensus       167 ~ngi~~~--~~~l~~~~~~  183 (302)
T d2p4oa1         167 ANGLKRF--GNFLYVSNTE  183 (302)
T ss_dssp             EEEEEEE--TTEEEEEETT
T ss_pred             ccccccc--CCceeeecCC
Confidence            7888775  5689999885

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.70  E-value=3.5e-16  Score=129.12  Aligned_cols=143  Identities=20%  Similarity=0.281  Sum_probs=110.8

Q ss_pred             CCcCCcceEEEcCCCCEEEEe-CCCeEEEEecCCcEEEee--eccCcCccCeEEcCCCCEEEEeCCCC-eEEEccCC-ce
Q 026389           74 GILNGPEDVCVDRNGVLYTAT-RDGWIKRLHKNGTWENWK--LIGGDTLLGITTTQENEILVCDADKG-LLKVTEEG-VT  148 (239)
Q Consensus        74 g~~~gPe~ia~d~~G~ly~~~-~~g~I~~~~~~G~~~~~~--~~~~~p~~Gl~~d~~G~L~v~d~~~g-~~~v~~~g-~~  148 (239)
                      +.+..|.+|++|++|+||+.+ .++++.+++.++......  .....|. |++++++|++|+++...+ +++++.++ ..
T Consensus        95 ~~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~i~~~~~g~~~v~~~~~~~i~~~d~~~~~~  173 (260)
T d1rwia_          95 DGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPD-GVAVDNSGNVYVTDTDNNRVVKLEAESNNQ  173 (260)
T ss_dssp             CSCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEECCCCSCCSCC-EEEECTTCCEEEEEGGGTEEEEECTTTCCE
T ss_pred             eeeeecccccccccceeEeeccccccccccccccceeeeeeecccCCcc-eeeecCCCCEeeecccccccccccccccee
Confidence            346789999999999999887 778899998877543222  2346789 999999999999998765 45566665 33


Q ss_pred             EEecccCCccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEe-cCCCCCcceEEEcC
Q 026389          149 VLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSIL-LDSLFFANGVALSK  227 (239)
Q Consensus       149 ~l~~~~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~-~~~l~~pnGia~s~  227 (239)
                      ....   ...+..|++|++|++|+||++|..                 +++|++|++++.....+ ..++..|.||++++
T Consensus       174 ~~~~---~~~~~~p~gi~~d~~g~l~vsd~~-----------------~~~i~~~~~~~~~~~~~~~~~~~~P~~i~~d~  233 (260)
T d1rwia_         174 VVLP---FTDITAPWGIAVDEAGTVYVTEHN-----------------TNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDS  233 (260)
T ss_dssp             EECC---CSSCCSEEEEEECTTCCEEEEETT-----------------TTEEEEECTTCSCCEECCCCSCCCEEEEEECT
T ss_pred             eeee---ccccCCCccceeeeeeeeeeeecC-----------------CCEEEEEeCCCCeEEEEccCCCCCeEEEEEeC
Confidence            3221   234578999999999999999976                 58999999986655544 35678999999999


Q ss_pred             CCCEEEEEeCC
Q 026389          228 DEDYLVVCETF  238 (239)
Q Consensus       228 dg~~lyvadt~  238 (239)
                      ||+ |||+|..
T Consensus       234 ~g~-l~vad~~  243 (260)
T d1rwia_         234 DRT-VYVADRG  243 (260)
T ss_dssp             TCC-EEEEEGG
T ss_pred             CCC-EEEEECC
Confidence            987 8999864

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.69  E-value=4.9e-16  Score=128.17  Aligned_cols=140  Identities=18%  Similarity=0.271  Sum_probs=106.8

Q ss_pred             CCcceEEEcCCCCEEEEe--CCCeEEEEecCCcEEEeee--ccCcCccCeEEcCCCCEEEEeCCCCeEEEccCC-ceEEe
Q 026389           77 NGPEDVCVDRNGVLYTAT--RDGWIKRLHKNGTWENWKL--IGGDTLLGITTTQENEILVCDADKGLLKVTEEG-VTVLA  151 (239)
Q Consensus        77 ~gPe~ia~d~~G~ly~~~--~~g~I~~~~~~G~~~~~~~--~~~~p~~Gl~~d~~G~L~v~d~~~g~~~v~~~g-~~~l~  151 (239)
                      .+|.+|++|++|++|+++  ..++|.+++.+++......  ....|. |++++++|+|||+|...+++++..++ .+.+.
T Consensus        14 ~~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~-gvav~~~g~i~v~d~~~~~i~~~~~~~~~~~~   92 (260)
T d1rwia_          14 LSPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQ-GLAVDGAGTVYVTDFNNRVVTLAAGSNNQTVL   92 (260)
T ss_dssp             CCEEEEEECTTCCEEEEECSSSCEEEEEC----CEEECCCCSCCSCC-CEEECTTCCEEEEETTTEEEEECTTCSCCEEC
T ss_pred             CCCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEEeccCCccCce-EEEEcCCCCEEEeeeeeceeeeeeeccceeee
Confidence            589999999999999875  5689999987665433322  345799 99999999999999998888887554 33332


Q ss_pred             cccCCccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEe-cCCCCCcceEEEcCCCC
Q 026389          152 SHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSIL-LDSLFFANGVALSKDED  230 (239)
Q Consensus       152 ~~~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~-~~~l~~pnGia~s~dg~  230 (239)
                      .   ...+..|++++++++|+||++|..                 +.++++++..+...... ..++..|+||+++++|+
T Consensus        93 ~---~~~~~~p~~iavd~~g~i~v~d~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~  152 (260)
T d1rwia_          93 P---FDGLNYPEGLAVDTQGAVYVADRG-----------------NNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGN  152 (260)
T ss_dssp             C---CCSCCSEEEEEECTTCCEEEEEGG-----------------GTEEEEECTTCSSCEECCCCSCCSCCEEEECTTCC
T ss_pred             e---eeeeeecccccccccceeEeeccc-----------------cccccccccccceeeeeeecccCCcceeeecCCCC
Confidence            2   123577999999999999999965                 46899999876655444 36789999999999998


Q ss_pred             EEEEEeCC
Q 026389          231 YLVVCETF  238 (239)
Q Consensus       231 ~lyvadt~  238 (239)
                       +|++++.
T Consensus       153 -~~v~~~~  159 (260)
T d1rwia_         153 -VYVTDTD  159 (260)
T ss_dssp             -EEEEEGG
T ss_pred             -Eeeeccc
Confidence             7888753

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.65  E-value=4.3e-15  Score=123.62  Aligned_cols=144  Identities=13%  Similarity=0.262  Sum_probs=108.8

Q ss_pred             cCCcCCcceEEEcCCCCEEEEe-CCCeEEEEecCCcEEE-ee--------------------------------------
Q 026389           73 EGILNGPEDVCVDRNGVLYTAT-RDGWIKRLHKNGTWEN-WK--------------------------------------  112 (239)
Q Consensus        73 ~g~~~gPe~ia~d~~G~ly~~~-~~g~I~~~~~~G~~~~-~~--------------------------------------  112 (239)
                      .|++..|.+|++|++|+||+++ .+++|.+++++|+... +.                                      
T Consensus        19 ~g~f~~P~gvavd~dg~i~VaD~~n~rI~v~d~~G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~   98 (279)
T d1q7fa_          19 EGQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIY   98 (279)
T ss_dssp             TTCBSCEEEEEECTTCCEEEEEGGGTEEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEE
T ss_pred             CCeECCccEEEEcCCCCEEEEECCCCEEEEEeCCCCEEEEecccCCCcccccccccccccccccccceeccCCccccccc
Confidence            3568899999999999999988 7789999987764211 00                                      


Q ss_pred             ------------eccCcCccCeEEcCCCCEEEEeCCCCeEE-EccCC--ceEEecccCCccccccccEEEcCCCCEEEEe
Q 026389          113 ------------LIGGDTLLGITTTQENEILVCDADKGLLK-VTEEG--VTVLASHVNGSRINLADDLIAATDGSIYFSV  177 (239)
Q Consensus       113 ------------~~~~~p~~Gl~~d~~G~L~v~d~~~g~~~-v~~~g--~~~l~~~~~g~~~~~pn~l~vd~dG~iy~td  177 (239)
                                  .....|. +++++++|++|+++...+.+. ++++|  ...+..   ...+..|.+++++++|++|++|
T Consensus        99 ~~~g~~~~~~~~~~~~~p~-~~avd~~G~i~v~~~~~~~~~~~~~~g~~~~~~g~---~~~~~~~~~i~~d~~g~i~v~d  174 (279)
T d1q7fa_          99 NQYGQFVRKFGATILQHPR-GVTVDNKGRIIVVECKVMRVIIFDQNGNVLHKFGC---SKHLEFPNGVVVNDKQEIFISD  174 (279)
T ss_dssp             CTTSCEEEEECTTTCSCEE-EEEECTTSCEEEEETTTTEEEEECTTSCEEEEEEC---TTTCSSEEEEEECSSSEEEEEE
T ss_pred             cccccceeecCCCcccccc-eeccccCCcEEEEeeccceeeEeccCCceeecccc---cccccccceeeeccceeEEeee
Confidence                        0113467 899999999999988766554 45677  333322   2346789999999999999999


Q ss_pred             CCCCcCcccccccceeecCCceEEEEeCCCCeEEEecC--CCCCcceEEEcCCCCEEEEEeCC
Q 026389          178 ASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLD--SLFFANGVALSKDEDYLVVCETF  238 (239)
Q Consensus       178 ~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~--~l~~pnGia~s~dg~~lyvadt~  238 (239)
                      ..                 .++|++||+++..+..+..  .+.+|.|||++++|+ +||+|+.
T Consensus       175 ~~-----------------~~~V~~~d~~G~~~~~~g~~g~~~~P~giavD~~G~-i~Vad~~  219 (279)
T d1q7fa_         175 NR-----------------AHCVKVFNYEGQYLRQIGGEGITNYPIGVGINSNGE-ILIADNH  219 (279)
T ss_dssp             GG-----------------GTEEEEEETTCCEEEEESCTTTSCSEEEEEECTTCC-EEEEECS
T ss_pred             cc-----------------ccceeeeecCCceeeeecccccccCCcccccccCCe-EEEEECC
Confidence            75                 5799999998766666542  477899999999998 8999863

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.61  E-value=1.9e-14  Score=119.69  Aligned_cols=147  Identities=20%  Similarity=0.202  Sum_probs=112.3

Q ss_pred             eccCCcCCcceEEEcCCCCEEEEe-CCCeEEEEecCCcEE-Eee--eccCcCccCeEEcCCCCEEEEeCCCCeEEEc-cC
Q 026389           71 LGEGILNGPEDVCVDRNGVLYTAT-RDGWIKRLHKNGTWE-NWK--LIGGDTLLGITTTQENEILVCDADKGLLKVT-EE  145 (239)
Q Consensus        71 l~~g~~~gPe~ia~d~~G~ly~~~-~~g~I~~~~~~G~~~-~~~--~~~~~p~~Gl~~d~~G~L~v~d~~~g~~~v~-~~  145 (239)
                      +....+..|.+++++++|++|+.+ ..+++.+++++|+.. .+.  .....|. +++++.+|++|+++...+.+.+. .+
T Consensus       108 ~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~-~i~~d~~g~i~v~d~~~~~V~~~d~~  186 (279)
T d1q7fa_         108 FGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGNVLHKFGCSKHLEFPN-GVVVNDKQEIFISDNRAHCVKVFNYE  186 (279)
T ss_dssp             ECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSCEEEEEECTTTCSSEE-EEEECSSSEEEEEEGGGTEEEEEETT
T ss_pred             cCCCcccccceeccccCCcEEEEeeccceeeEeccCCceeecccccccccccc-eeeeccceeEEeeeccccceeeeecC
Confidence            344457889999999999999877 678999999999753 332  2245688 99999999999999987777664 67


Q ss_pred             C--ceEEecccCCccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecC--CCCCcc
Q 026389          146 G--VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLD--SLFFAN  221 (239)
Q Consensus       146 g--~~~l~~~~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~--~l~~pn  221 (239)
                      |  ...+..  . ..+.+|.+|++|++|+||++|..                .+++|.+|++++.-+..+..  ....|.
T Consensus       187 G~~~~~~g~--~-g~~~~P~giavD~~G~i~Vad~~----------------~~~~v~~f~~~G~~~~~~~~~~~~~~p~  247 (279)
T d1q7fa_         187 GQYLRQIGG--E-GITNYPIGVGINSNGEILIADNH----------------NNFNLTIFTQDGQLISALESKVKHAQCF  247 (279)
T ss_dssp             CCEEEEESC--T-TTSCSEEEEEECTTCCEEEEECS----------------SSCEEEEECTTSCEEEEEEESSCCSCEE
T ss_pred             Cceeeeecc--c-ccccCCcccccccCCeEEEEECC----------------CCcEEEEECCCCCEEEEEeCCCCCCCEe
Confidence            7  333322  1 24678999999999999999965                14689999997544555543  356799


Q ss_pred             eEEEcCCCCEEEEEeCC
Q 026389          222 GVALSKDEDYLVVCETF  238 (239)
Q Consensus       222 Gia~s~dg~~lyvadt~  238 (239)
                      +||+++||+ |||++..
T Consensus       248 ~vav~~dG~-l~V~~~n  263 (279)
T d1q7fa_         248 DVALMDDGS-VVLASKD  263 (279)
T ss_dssp             EEEEETTTE-EEEEETT
T ss_pred             EEEEeCCCc-EEEEeCC
Confidence            999999996 8998854

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.59  E-value=4.4e-14  Score=117.22  Aligned_cols=146  Identities=16%  Similarity=0.159  Sum_probs=113.6

Q ss_pred             eEeccCCcCCcceEEEcC-CCCEEEEe-CCCeEEEEecCCcE-EEee-eccCcCccCeEEcC-CCCEEEEeCCCC---eE
Q 026389           69 TRLGEGILNGPEDVCVDR-NGVLYTAT-RDGWIKRLHKNGTW-ENWK-LIGGDTLLGITTTQ-ENEILVCDADKG---LL  140 (239)
Q Consensus        69 ~~l~~g~~~gPe~ia~d~-~G~ly~~~-~~g~I~~~~~~G~~-~~~~-~~~~~p~~Gl~~d~-~G~L~v~d~~~g---~~  140 (239)
                      +.+....+..|++||+|. .++||+++ ..++|.+++.+|+. +++. .....|. +|++|+ .|.||+++.+.+   +.
T Consensus        71 ~~v~~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~p~-~l~vdp~~g~ly~t~~~~~~~~I~  149 (263)
T d1npea_          71 TTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPR-GIVTDPVRGNLYWTDWNRDNPKIE  149 (263)
T ss_dssp             EEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEE-EEEEETTTTEEEEEECCSSSCEEE
T ss_pred             EEEEEeccccccEEEEeccCCeEEEeccCCCEEEEEecCCceEEEEecccccCCc-EEEEecccCcEEEeecCCCCcEEE
Confidence            444444477999999996 78999887 67899999998863 3333 3346899 999995 568999997643   56


Q ss_pred             EEccCC--ceEEecccCCccccccccEEEcCC-CCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecCCC
Q 026389          141 KVTEEG--VTVLASHVNGSRINLADDLIAATD-GSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSL  217 (239)
Q Consensus       141 ~v~~~g--~~~l~~~~~g~~~~~pn~l~vd~d-G~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~~l  217 (239)
                      +.+.+|  .+.+..    ..+..|++|++|+. ++|||+|..                 .++|.++|.++...+.+..++
T Consensus       150 r~~~dG~~~~~i~~----~~~~~P~glaiD~~~~~lYw~d~~-----------------~~~I~~~~~~g~~~~~v~~~~  208 (263)
T d1npea_         150 TSHMDGTNRRILAQ----DNLGLPNGLTFDAFSSQLCWVDAG-----------------THRAECLNPAQPGRRKVLEGL  208 (263)
T ss_dssp             EEETTSCCCEEEEC----TTCSCEEEEEEETTTTEEEEEETT-----------------TTEEEEEETTEEEEEEEEECC
T ss_pred             EecCCCCCceeeee----ecccccceEEEeecCcEEEEEeCC-----------------CCEEEEEECCCCCeEEEECCC
Confidence            666666  455543    23567999999976 589999976                 579999999988888888999


Q ss_pred             CCcceEEEcCCCCEEEEEeCC
Q 026389          218 FFANGVALSKDEDYLVVCETF  238 (239)
Q Consensus       218 ~~pnGia~s~dg~~lyvadt~  238 (239)
                      .+|.||++.  +++||++|+.
T Consensus       209 ~~P~~lav~--~~~lYwtd~~  227 (263)
T d1npea_         209 QYPFAVTSY--GKNLYYTDWK  227 (263)
T ss_dssp             CSEEEEEEE--TTEEEEEETT
T ss_pred             CCcEEEEEE--CCEEEEEECC
Confidence            999999996  6789999875

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.57  E-value=6.8e-14  Score=118.74  Aligned_cols=143  Identities=13%  Similarity=0.207  Sum_probs=105.5

Q ss_pred             cCCcceEEEcCCCCEEEEeC-------CCeEEEEecCCc-EEEeeeccCcCccCeEEcCCCC-EEEEeCCCCeE-EEc--
Q 026389           76 LNGPEDVCVDRNGVLYTATR-------DGWIKRLHKNGT-WENWKLIGGDTLLGITTTQENE-ILVCDADKGLL-KVT--  143 (239)
Q Consensus        76 ~~gPe~ia~d~~G~ly~~~~-------~g~I~~~~~~G~-~~~~~~~~~~p~~Gl~~d~~G~-L~v~d~~~g~~-~v~--  143 (239)
                      ...|.+++++++|++|+++.       .+.+++++++|+ ++.+......|+ ||+++++|+ |||+|...+.+ +++  
T Consensus       129 ~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~~~~~~~~~~~pn-Gia~s~dg~~lyvad~~~~~I~~~d~~  207 (319)
T d2dg1a1         129 AYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVAN-GIALSTDEKVLWVTETTANRLHRIALE  207 (319)
T ss_dssp             CCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEE-EEEECTTSSEEEEEEGGGTEEEEEEEC
T ss_pred             ccCCcceeEEeccceeecccccccccCcceeEEEecccceeEEEeeccceee-eeeeccccceEEEecccCCceEEEEEc
Confidence            56799999999999999873       357999999885 566666778999 999999985 99999876544 454  


Q ss_pred             cCC--ceEEecc--cCCccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEec-----
Q 026389          144 EEG--VTVLASH--VNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILL-----  214 (239)
Q Consensus       144 ~~g--~~~l~~~--~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~-----  214 (239)
                      .+|  .......  ..-.....|+|+++|++|+||+++..                 .|+|.+||+++..+..+.     
T Consensus       208 ~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~-----------------~g~V~~~~p~G~~l~~i~~P~~~  270 (319)
T d2dg1a1         208 DDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYG-----------------QGRVLVFNKRGYPIGQILIPGRD  270 (319)
T ss_dssp             TTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEET-----------------TTEEEEECTTSCEEEEEECTTGG
T ss_pred             CCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcC-----------------CCEEEEECCCCcEEEEEeCCCcC
Confidence            354  2222111  11122346999999999999999965                 689999999865555443     


Q ss_pred             -CCCCCcceEEEcCCCCEEEEEe
Q 026389          215 -DSLFFANGVALSKDEDYLVVCE  236 (239)
Q Consensus       215 -~~l~~pnGia~s~dg~~lyvad  236 (239)
                       .....+..++|.++++.+|++.
T Consensus       271 ~~~~~~~~~~~~~~~~~~~~~t~  293 (319)
T d2dg1a1         271 EGHMLRSTHPQFIPGTNQLIICS  293 (319)
T ss_dssp             GTCSCBCCEEEECTTSCEEEEEE
T ss_pred             CCcCceeeeEEEeCCCCEEEEEc
Confidence             1234678899999888888764

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=4.8e-13  Score=110.90  Aligned_cols=146  Identities=14%  Similarity=0.170  Sum_probs=109.3

Q ss_pred             eEeccCCcCCcceEEEcC-CCCEEEEe-CCCeEEEEecCCcEE--EeeeccCcCccCeEEcC-CCCEEEEeCCC--CeEE
Q 026389           69 TRLGEGILNGPEDVCVDR-NGVLYTAT-RDGWIKRLHKNGTWE--NWKLIGGDTLLGITTTQ-ENEILVCDADK--GLLK  141 (239)
Q Consensus        69 ~~l~~g~~~gPe~ia~d~-~G~ly~~~-~~g~I~~~~~~G~~~--~~~~~~~~p~~Gl~~d~-~G~L~v~d~~~--g~~~  141 (239)
                      +.+....+..|+++|+|. .++||+++ ..++|.+++.+|+..  ........|. +|++|+ .|.||+++.+.  .+.+
T Consensus        69 ~~~~~~~~~~p~glAvD~~~~~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~-~l~vd~~~g~ly~~~~~~~~~I~r  147 (266)
T d1ijqa1          69 DTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPR-AIVVDPVHGFMYWTDWGTPAKIKK  147 (266)
T ss_dssp             EEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEE-EEEEETTTTEEEEEECSSSCEEEE
T ss_pred             EEEEeCCCCCcceEEEeeccceEEEEecCCCEEEeEecCCceEEEEEcCCCCCcc-eEEEEcccCeEEEeccCCCcceeE
Confidence            333334478899999997 78999887 678999999888632  2334457899 999996 67899999654  4666


Q ss_pred             EccCC--ceEEecccCCccccccccEEEcCC-CCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEec---C
Q 026389          142 VTEEG--VTVLASHVNGSRINLADDLIAATD-GSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILL---D  215 (239)
Q Consensus       142 v~~~g--~~~l~~~~~g~~~~~pn~l~vd~d-G~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~---~  215 (239)
                      .+.+|  .+.+..    ..+..|+++++|+. ++||++|..                 .++|.+++.++...+.+.   .
T Consensus       148 ~~~dGs~~~~l~~----~~~~~p~gl~iD~~~~~lYw~d~~-----------------~~~I~~~~~dG~~~~~~~~~~~  206 (266)
T d1ijqa1         148 GGLNGVDIYSLVT----ENIQWPNGITLDLLSGRLYWVDSK-----------------LHSISSIDVNGGNRKTILEDEK  206 (266)
T ss_dssp             EETTSCCEEEEEC----SSCSCEEEEEEETTTTEEEEEETT-----------------TTEEEEEETTSCSCEEEEECTT
T ss_pred             eccCCCceecccc----cccceeeEEEeeccccEEEEecCC-----------------cCEEEEEECCCCCEEEEEeCCC
Confidence            66777  455543    23567999999986 489999976                 579999999876655553   3


Q ss_pred             CCCCcceEEEcCCCCEEEEEeCC
Q 026389          216 SLFFANGVALSKDEDYLVVCETF  238 (239)
Q Consensus       216 ~l~~pnGia~s~dg~~lyvadt~  238 (239)
                      .+.+|.||++.  +++||++|..
T Consensus       207 ~~~~p~~lav~--~~~ly~td~~  227 (266)
T d1ijqa1         207 RLAHPFSLAVF--EDKVFWTDII  227 (266)
T ss_dssp             TTSSEEEEEEE--TTEEEEEETT
T ss_pred             cccccEEEEEE--CCEEEEEECC
Confidence            46788899987  5689999864

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=8.2e-13  Score=109.48  Aligned_cols=142  Identities=14%  Similarity=0.140  Sum_probs=107.9

Q ss_pred             cCCcceEEEcC-CCCEEEEe-CCCeEEEEecCCc-----EE-EeeeccCcCccCeEEcC-CCCEEEEeCCCCeEEEc-cC
Q 026389           76 LNGPEDVCVDR-NGVLYTAT-RDGWIKRLHKNGT-----WE-NWKLIGGDTLLGITTTQ-ENEILVCDADKGLLKVT-EE  145 (239)
Q Consensus        76 ~~gPe~ia~d~-~G~ly~~~-~~g~I~~~~~~G~-----~~-~~~~~~~~p~~Gl~~d~-~G~L~v~d~~~g~~~v~-~~  145 (239)
                      +..+.+|++|. ++.||.++ ..++|.+.+.+|.     .+ ........|. ||++|. .++||++|...+.+.+. .+
T Consensus        29 ~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~-glAvD~~~~~lY~~d~~~~~I~v~~~~  107 (266)
T d1ijqa1          29 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD-GLAVDWIHSNIYWTDSVLGTVSVADTK  107 (266)
T ss_dssp             CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCC-EEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             CCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcc-eEEEeeccceEEEEecCCCEEEeEecC
Confidence            56788999996 67899887 7788999876552     22 2233456799 999995 55899999988877765 67


Q ss_pred             C--ceEEecccCCccccccccEEEcC-CCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEec-CCCCCcc
Q 026389          146 G--VTVLASHVNGSRINLADDLIAAT-DGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILL-DSLFFAN  221 (239)
Q Consensus       146 g--~~~l~~~~~g~~~~~pn~l~vd~-dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~-~~l~~pn  221 (239)
                      |  ...+...    ....|.++++|+ +|.+||++...                .++|+|.+.++...+.+. .++..|+
T Consensus       108 g~~~~~~~~~----~~~~P~~l~vd~~~g~ly~~~~~~----------------~~~I~r~~~dGs~~~~l~~~~~~~p~  167 (266)
T d1ijqa1         108 GVKRKTLFRE----NGSKPRAIVVDPVHGFMYWTDWGT----------------PAKIKKGGLNGVDIYSLVTENIQWPN  167 (266)
T ss_dssp             SSSEEEEEEC----TTCCEEEEEEETTTTEEEEEECSS----------------SCEEEEEETTSCCEEEEECSSCSCEE
T ss_pred             CceEEEEEcC----CCCCcceEEEEcccCeEEEeccCC----------------CcceeEeccCCCceecccccccceee
Confidence            7  3343322    235689999998 58999999652                478999999977776665 6789999


Q ss_pred             eEEEcCCCCEEEEEeCC
Q 026389          222 GVALSKDEDYLVVCETF  238 (239)
Q Consensus       222 Gia~s~dg~~lyvadt~  238 (239)
                      ||+++++++.||++|+.
T Consensus       168 gl~iD~~~~~lYw~d~~  184 (266)
T d1ijqa1         168 GITLDLLSGRLYWVDSK  184 (266)
T ss_dssp             EEEEETTTTEEEEEETT
T ss_pred             EEEeeccccEEEEecCC
Confidence            99999999999999975

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.49  E-value=7.5e-13  Score=109.63  Aligned_cols=141  Identities=18%  Similarity=0.168  Sum_probs=107.1

Q ss_pred             CcceEEEcC-CCCEEEEe-CCCeEEEEecCCc-EEEeee-ccCcCccCeEEcC-CCCEEEEeCCCCeEEE-ccCC--ceE
Q 026389           78 GPEDVCVDR-NGVLYTAT-RDGWIKRLHKNGT-WENWKL-IGGDTLLGITTTQ-ENEILVCDADKGLLKV-TEEG--VTV  149 (239)
Q Consensus        78 gPe~ia~d~-~G~ly~~~-~~g~I~~~~~~G~-~~~~~~-~~~~p~~Gl~~d~-~G~L~v~d~~~g~~~v-~~~g--~~~  149 (239)
                      .+.+|++|. ++.||.++ .+++|++++.+|. .+++.. ....|. ||++|. .++||+++...+.+.+ +.+|  .++
T Consensus        37 ~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~p~-~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~~~  115 (263)
T d1npea_          37 VIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPE-GIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRV  115 (263)
T ss_dssp             EEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEE-EEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred             cEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEecccccc-EEEEeccCCeEEEeccCCCEEEEEecCCceEEE
Confidence            456789996 67899877 7789999988764 344443 346899 999995 5689999987766655 4666  455


Q ss_pred             EecccCCccccccccEEEcCC-CCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEe-cCCCCCcceEEEcC
Q 026389          150 LASHVNGSRINLADDLIAATD-GSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSIL-LDSLFFANGVALSK  227 (239)
Q Consensus       150 l~~~~~g~~~~~pn~l~vd~d-G~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~-~~~l~~pnGia~s~  227 (239)
                      +...    .+..|.++++||. |.+|+++...               ..++|+|.+.++...+.+ .+++..|+||++++
T Consensus       116 l~~~----~l~~p~~l~vdp~~g~ly~t~~~~---------------~~~~I~r~~~dG~~~~~i~~~~~~~P~glaiD~  176 (263)
T d1npea_         116 LFDT----GLVNPRGIVTDPVRGNLYWTDWNR---------------DNPKIETSHMDGTNRRILAQDNLGLPNGLTFDA  176 (263)
T ss_dssp             EECS----SCSSEEEEEEETTTTEEEEEECCS---------------SSCEEEEEETTSCCCEEEECTTCSCEEEEEEET
T ss_pred             Eecc----cccCCcEEEEecccCcEEEeecCC---------------CCcEEEEecCCCCCceeeeeecccccceEEEee
Confidence            5432    2457999999985 7999999652               246899999987654444 47899999999999


Q ss_pred             CCCEEEEEeCC
Q 026389          228 DEDYLVVCETF  238 (239)
Q Consensus       228 dg~~lyvadt~  238 (239)
                      +++.||++|..
T Consensus       177 ~~~~lYw~d~~  187 (263)
T d1npea_         177 FSSQLCWVDAG  187 (263)
T ss_dssp             TTTEEEEEETT
T ss_pred             cCcEEEEEeCC
Confidence            99999999975

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.46  E-value=8.9e-13  Score=110.66  Aligned_cols=139  Identities=19%  Similarity=0.146  Sum_probs=104.7

Q ss_pred             CCcceEEEcCCCCEEEEeC-------CCeEEEEecCCcEEEeeeccCcCccCeEEcCCCC-EEEEeCCCCeEE-Ecc--C
Q 026389           77 NGPEDVCVDRNGVLYTATR-------DGWIKRLHKNGTWENWKLIGGDTLLGITTTQENE-ILVCDADKGLLK-VTE--E  145 (239)
Q Consensus        77 ~gPe~ia~d~~G~ly~~~~-------~g~I~~~~~~G~~~~~~~~~~~p~~Gl~~d~~G~-L~v~d~~~g~~~-v~~--~  145 (239)
                      ..+.++.+|++|++|+++.       .+.+++++ +|+.+........|+ |++++++++ +|++|+..+.+. ++-  +
T Consensus       103 ~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~-~g~~~~~~~~~~~~N-g~~~s~d~~~l~~~dt~~~~I~~~~~d~~  180 (295)
T d2ghsa1         103 NRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA-KGKVTKLFADISIPN-SICFSPDGTTGYFVDTKVNRLMRVPLDAR  180 (295)
T ss_dssp             EEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE-TTEEEEEEEEESSEE-EEEECTTSCEEEEEETTTCEEEEEEBCTT
T ss_pred             ccceeeEECCCCCEEEEeccccccccceeEeeec-CCcEEEEeeccCCcc-eeeecCCCceEEEeecccceeeEeeeccc
Confidence            4688999999999998862       35677775 577766666778899 999998885 999998766554 432  2


Q ss_pred             -C-----ceEEecccCCccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecCCCCC
Q 026389          146 -G-----VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFF  219 (239)
Q Consensus       146 -g-----~~~l~~~~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~~l~~  219 (239)
                       +     ...+.. ..+ ....|+++++|++|+||++...                 .|+|.+|||+++.+..+.-...+
T Consensus       181 ~~~~~~~~~~~~~-~~~-~~g~pdG~~vD~~GnlWva~~~-----------------~g~V~~~dp~G~~~~~i~lP~~~  241 (295)
T d2ghsa1         181 TGLPTGKAEVFID-STG-IKGGMDGSVCDAEGHIWNARWG-----------------EGAVDRYDTDGNHIARYEVPGKQ  241 (295)
T ss_dssp             TCCBSSCCEEEEE-CTT-SSSEEEEEEECTTSCEEEEEET-----------------TTEEEEECTTCCEEEEEECSCSB
T ss_pred             ccccccceEEEec-cCc-ccccccceEEcCCCCEEeeeeC-----------------CCceEEecCCCcEeeEecCCCCc
Confidence             1     122222 112 2246999999999999999854                 58999999997777666555578


Q ss_pred             cceEEEc-CCCCEEEEEe
Q 026389          220 ANGVALS-KDEDYLVVCE  236 (239)
Q Consensus       220 pnGia~s-~dg~~lyvad  236 (239)
                      |+.+||. +|.++|||+-
T Consensus       242 ~T~~~FGG~d~~~LyvTt  259 (295)
T d2ghsa1         242 TTCPAFIGPDASRLLVTS  259 (295)
T ss_dssp             EEEEEEESTTSCEEEEEE
T ss_pred             eEEEEEeCCCCCEEEEEE
Confidence            9999995 8999999984

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.44  E-value=1.9e-12  Score=108.37  Aligned_cols=140  Identities=16%  Similarity=0.112  Sum_probs=100.3

Q ss_pred             cCCcceEEEcCCCCEEEEe-CCCeEEEEecCCc-EEEeee-----------ccCcCccCeEEcCCCCEEEEeCCCCeEE-
Q 026389           76 LNGPEDVCVDRNGVLYTAT-RDGWIKRLHKNGT-WENWKL-----------IGGDTLLGITTTQENEILVCDADKGLLK-  141 (239)
Q Consensus        76 ~~gPe~ia~d~~G~ly~~~-~~g~I~~~~~~G~-~~~~~~-----------~~~~p~~Gl~~d~~G~L~v~d~~~g~~~-  141 (239)
                      ...|.+++++++|++|+++ .+++|++++.++. ...+..           ....++ |+.++ .+.+|+++...+.+. 
T Consensus       112 ~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n-gi~~~-~~~l~~~~~~~~~i~~  189 (302)
T d2p4oa1         112 AIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAAN-GLKRF-GNFLYVSNTEKMLLLR  189 (302)
T ss_dssp             CSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEE-EEEEE-TTEEEEEETTTTEEEE
T ss_pred             ccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceeeccCcccccc-ccccc-CCceeeecCCCCeEEe
Confidence            4568999999999999887 7899999997653 333321           123467 88886 357999998876654 


Q ss_pred             Ecc--CC-ceEEecccCCccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEec---C
Q 026389          142 VTE--EG-VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILL---D  215 (239)
Q Consensus       142 v~~--~g-~~~l~~~~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~---~  215 (239)
                      ++.  ++ .......   .....|+++++|+||+||+++..                 .++|++|+++ ++...+.   .
T Consensus       190 ~~~~~~~~~~~~~~~---~~~~~pdgia~d~dG~l~va~~~-----------------~~~V~~i~p~-G~~~~~~~~~~  248 (302)
T d2p4oa1         190 IPVDSTDKPGEPEIF---VEQTNIDDFAFDVEGNLYGATHI-----------------YNSVVRIAPD-RSTTIIAQAEQ  248 (302)
T ss_dssp             EEBCTTSCBCCCEEE---EESCCCSSEEEBTTCCEEEECBT-----------------TCCEEEECTT-CCEEEEECGGG
T ss_pred             ccccccccccccccc---cCCCCCcceEECCCCCEEEEEcC-----------------CCcEEEECCC-CCEEEEEecCC
Confidence            443  22 1111000   12346899999999999999865                 5799999998 4444443   4


Q ss_pred             CCCCcceEEE---cCCCCEEEEEeCC
Q 026389          216 SLFFANGVAL---SKDEDYLVVCETF  238 (239)
Q Consensus       216 ~l~~pnGia~---s~dg~~lyvadt~  238 (239)
                      ++..|++++|   ++|+++|||+..+
T Consensus       249 ~~~~pt~vafg~~~~D~~~Lyvtt~~  274 (302)
T d2p4oa1         249 GVIGSTAVAFGQTEGDCTAIYVVTNG  274 (302)
T ss_dssp             TCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred             CCCCceEEEEcCCCCCCCEEEEECCC
Confidence            7889999999   6799999998653

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=99.14  E-value=1.2e-09  Score=96.51  Aligned_cols=169  Identities=15%  Similarity=0.179  Sum_probs=108.0

Q ss_pred             cceEeccCCcCCcceEEEcCCCCEEEEeC-CCeEEEEec-CCcEEEeeec---------cCcCccCeEEcCC----CCEE
Q 026389           67 SVTRLGEGILNGPEDVCVDRNGVLYTATR-DGWIKRLHK-NGTWENWKLI---------GGDTLLGITTTQE----NEIL  131 (239)
Q Consensus        67 ~~~~l~~g~~~gPe~ia~d~~G~ly~~~~-~g~I~~~~~-~G~~~~~~~~---------~~~p~~Gl~~d~~----G~L~  131 (239)
                      +++.+.++ +..|.+|+|.++|+||++.. .|+|++++. +++.+.+...         .+--+ ||+++++    +.+|
T Consensus        18 ~~~~ia~~-L~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLL-gia~~Pdf~~n~~iY   95 (450)
T d1crua_          18 DKKVILSN-LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLL-GFAFHPDFKNNPYIY   95 (450)
T ss_dssp             CEEEEECC-CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEE-EEEECTTTTTSCEEE
T ss_pred             EEEEEECC-CCCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCcee-eEEeCCCCccCCEEE
Confidence            46778877 89999999999999999995 799999986 4444433221         12235 8999864    6799


Q ss_pred             EEeCC----------CC--eEEE-c--cCC-----ceEEecccCCccccccccEEEcCCCCEEEEeCCCCcCcccc--c-
Q 026389          132 VCDAD----------KG--LLKV-T--EEG-----VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNW--G-  188 (239)
Q Consensus       132 v~d~~----------~g--~~~v-~--~~g-----~~~l~~~~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~--~-  188 (239)
                      ++-..          .+  +++. .  .+.     .+.+........-++-..|++++||.|||+-..........  . 
T Consensus        96 vsyt~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~i~~~~p~~~~H~gg~l~fgpDG~LYvs~Gd~~~~~~~~~~~~  175 (450)
T d1crua_          96 ISGTFKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGDQGRNQLAYLFLP  175 (450)
T ss_dssp             EEEEEECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECCTTTTSGGGTTSC
T ss_pred             EEEecCCCCCcccccccceEEEeeecccccccccceEEEeecccccccccccceeEcCCCCEEEEecCCCcccccccccc
Confidence            86421          01  1222 2  222     12232222223335567999999999999876521110000  0 


Q ss_pred             -------cc-----ceeecCCceEEEEeCCCCe-----------EEEecCCCCCcceEEEcCCCCEEEEEeCC
Q 026389          189 -------LD-----LLEAKPHGKLLKYDPSLNE-----------TSILLDSLFFANGVALSKDEDYLVVCETF  238 (239)
Q Consensus       189 -------~~-----~~e~~~~g~v~~~d~~~~~-----------~~~~~~~l~~pnGia~s~dg~~lyvadt~  238 (239)
                             ..     .-.....|+|+|+++++..           .++...++.+|.|++|+++|+ ||++|-+
T Consensus       176 ~~~~~~~~~~~~~~q~~~~~~Gkilri~~dg~~~~dnP~~~~~~~ei~a~G~RNp~g~~~~p~g~-l~~~e~G  247 (450)
T d1crua_         176 NQAQHTPTQQELNGKDYHTYMGKVLRLNLDGSIPKDNPSFNGVVSHIYTLGHRNPQGLAFTPNGK-LLQSEQG  247 (450)
T ss_dssp             CCTTCCCCHHHHHTTCCTTCSSEEEEECTTSCCCTTCCEETTEECSEEEBCCSEEEEEEECTTSC-EEEEEEC
T ss_pred             cccccCcccccccccccccccCceEEeeccccccccccccccccceEEEeccccccceeecccce-eeecccc
Confidence                   00     0001235999999987542           256789999999999999887 8998864

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=98.97  E-value=3e-08  Score=79.77  Aligned_cols=144  Identities=15%  Similarity=0.174  Sum_probs=98.0

Q ss_pred             cCCcceEEEcCCCCEE-EEe-CCCeEEEEecC-CcEEEeeeccCcCccCeEEcCCC-CEEEEeCCCCeEEEcc-CCceEE
Q 026389           76 LNGPEDVCVDRNGVLY-TAT-RDGWIKRLHKN-GTWENWKLIGGDTLLGITTTQEN-EILVCDADKGLLKVTE-EGVTVL  150 (239)
Q Consensus        76 ~~gPe~ia~d~~G~ly-~~~-~~g~I~~~~~~-G~~~~~~~~~~~p~~Gl~~d~~G-~L~v~d~~~g~~~v~~-~g~~~l  150 (239)
                      ...|..++++++|..+ ++. .++.+..++.. ++..........|. .+++.+++ .+|++....+.+.+.. ...+..
T Consensus       115 ~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (301)
T d1l0qa2         115 GKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPK-GIAVTPDGTKVYVANFDSMSISVIDTVTNSVI  193 (301)
T ss_dssp             SSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCSSEE-EEEECTTSSEEEEEETTTTEEEEEETTTTEEE
T ss_pred             cccceEEEeecCCCeeeeeeccccceeeeeccccceeeecccCCCce-EEEeeccccceeeecccccccccccccceeee
Confidence            3567889999988644 444 56677777653 34333334456688 89999887 4788887777766653 222221


Q ss_pred             ecccCCccccccccEEEcCCC-CEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecCCCCCcceEEEcCCC
Q 026389          151 ASHVNGSRINLADDLIAATDG-SIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDE  229 (239)
Q Consensus       151 ~~~~~g~~~~~pn~l~vd~dG-~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~~l~~pnGia~s~dg  229 (239)
                      .....   ...|++++++++| .+|++....               ..++|++||..+++....+.....|.+++|+|||
T Consensus       194 ~~~~~---~~~~~~~~~~~~g~~~~v~~~~~---------------~~~~v~v~D~~t~~~~~~~~~~~~~~~va~spdg  255 (301)
T d1l0qa2         194 DTVKV---EAAPSGIAVNPEGTKAYVTNVDK---------------YFNTVSMIDTGTNKITARIPVGPDPAGIAVTPDG  255 (301)
T ss_dssp             EEEEC---SSEEEEEEECTTSSEEEEEEECS---------------SCCEEEEEETTTTEEEEEEECCSSEEEEEECTTS
T ss_pred             ecccc---cCCcceeeccccccccccccccc---------------eeeeeeeeecCCCeEEEEEcCCCCEEEEEEeCCC
Confidence            11111   1347899999998 566765431               2478999999988876655556789999999999


Q ss_pred             CEEEEEeCC
Q 026389          230 DYLVVCETF  238 (239)
Q Consensus       230 ~~lyvadt~  238 (239)
                      ++|||+.+.
T Consensus       256 ~~l~va~~~  264 (301)
T d1l0qa2         256 KKVYVALSF  264 (301)
T ss_dssp             SEEEEEETT
T ss_pred             CEEEEEECC
Confidence            999998753

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=98.97  E-value=4.3e-08  Score=78.82  Aligned_cols=145  Identities=13%  Similarity=0.174  Sum_probs=103.0

Q ss_pred             eEeccCCcCCcceEEEcCCCC-EEEEe-CCCeEEEEec-CCcEEEeeeccCcCccCeEEcCCCC-EEEEeCCCCeEEEc-
Q 026389           69 TRLGEGILNGPEDVCVDRNGV-LYTAT-RDGWIKRLHK-NGTWENWKLIGGDTLLGITTTQENE-ILVCDADKGLLKVT-  143 (239)
Q Consensus        69 ~~l~~g~~~gPe~ia~d~~G~-ly~~~-~~g~I~~~~~-~G~~~~~~~~~~~p~~Gl~~d~~G~-L~v~d~~~g~~~v~-  143 (239)
                      +.+..+  ..|.++++++||+ ||++. .+++|..||. +++..........|. +++++++|+ ++++......+.+. 
T Consensus        26 ~~i~~g--~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  102 (301)
T d1l0qa2          26 ATIPVG--SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSPQ-GVAVSPDGKQVYVTNMASSTLSVID  102 (301)
T ss_dssp             EEEECS--SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSSEE-EEEECTTSSEEEEEETTTTEEEEEE
T ss_pred             EEEECC--CCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeeecccccc-ccccccccccccccccccceeeecc
Confidence            344444  5799999999986 77766 7899999996 455433345567789 999999985 67777666666665 


Q ss_pred             -cCC-ceEEecccCCccccccccEEEcCCCC-EEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecCCCCCc
Q 026389          144 -EEG-VTVLASHVNGSRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFA  220 (239)
Q Consensus       144 -~~g-~~~l~~~~~g~~~~~pn~l~vd~dG~-iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~~l~~p  220 (239)
                       .++ .......     ...+..+.+++||+ ++++...                 .+.+..++..+++..........|
T Consensus       103 ~~~~~~~~~~~~-----~~~~~~~~~~~dg~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~  160 (301)
T d1l0qa2         103 TTSNTVAGTVKT-----GKSPLGLALSPDGKKLYVTNNG-----------------DKTVSVINTVTKAVINTVSVGRSP  160 (301)
T ss_dssp             TTTTEEEEEEEC-----SSSEEEEEECTTSSEEEEEETT-----------------TTEEEEEETTTTEEEEEEECCSSE
T ss_pred             cccceeeeeccc-----cccceEEEeecCCCeeeeeecc-----------------ccceeeeeccccceeeecccCCCc
Confidence             344 2222221     13467899999995 5555543                 356778888888777666667789


Q ss_pred             ceEEEcCCCCEEEEEeCC
Q 026389          221 NGVALSKDEDYLVVCETF  238 (239)
Q Consensus       221 nGia~s~dg~~lyvadt~  238 (239)
                      ..+++++|++.+|++...
T Consensus       161 ~~~~~~~~~~~~~~~~~~  178 (301)
T d1l0qa2         161 KGIAVTPDGTKVYVANFD  178 (301)
T ss_dssp             EEEEECTTSSEEEEEETT
T ss_pred             eEEEeeccccceeeeccc
Confidence            999999999999998653

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.84  E-value=9.1e-08  Score=77.83  Aligned_cols=140  Identities=9%  Similarity=0.001  Sum_probs=94.5

Q ss_pred             EEEEeCCCeEEEEecC-CcEE-Eee--eccCcCccCeEEcCCCC-EEEEeCCCCeEEE-c-cCC--ceEEecccCCcccc
Q 026389           90 LYTATRDGWIKRLHKN-GTWE-NWK--LIGGDTLLGITTTQENE-ILVCDADKGLLKV-T-EEG--VTVLASHVNGSRIN  160 (239)
Q Consensus        90 ly~~~~~g~I~~~~~~-G~~~-~~~--~~~~~p~~Gl~~d~~G~-L~v~d~~~g~~~v-~-~~g--~~~l~~~~~g~~~~  160 (239)
                      ++++..+++|..||.. ++.. .+.  ..+..|. ++++++||+ |||+....+.+.+ | .+|  ...+..........
T Consensus         4 ~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~-~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~   82 (337)
T d1pbyb_           4 ILAPARPDKLVVIDTEKMAVDKVITIADAGPTPM-VPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVK   82 (337)
T ss_dssp             EEEEETTTEEEEEETTTTEEEEEEECTTCTTCCC-CEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEE
T ss_pred             EEEEcCCCEEEEEECCCCeEEEEEECCCCCCCcc-EEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCccccc
Confidence            5577789999999964 4432 222  2356789 999999996 7788776666655 5 456  23332222222345


Q ss_pred             ccccEEEcCCC-CEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecCCCCCcceEEEcCCCCEEEEEe
Q 026389          161 LADDLIAATDG-SIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCE  236 (239)
Q Consensus       161 ~pn~l~vd~dG-~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~~l~~pnGia~s~dg~~lyvad  236 (239)
                      .+.++++++|| .+|++......      ..........++..+|..+++..........|.++++++||+++|++.
T Consensus        83 ~~~~v~~s~dg~~l~~~~~~~~~------~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~  153 (337)
T d1pbyb_          83 SLFGAALSPDGKTLAIYESPVRL------ELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLG  153 (337)
T ss_dssp             CTTCEEECTTSSEEEEEEEEEEE------CSSCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEES
T ss_pred             ceeeEEEcCCCcEEEEeecCCcc------eeeeccccccceeeccccCCeEEEeccccCCceEEEEcCCCCEEEEEc
Confidence            68899999998 56776543110      011122345788899999888777666677899999999999999864

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=98.78  E-value=1.3e-07  Score=77.24  Aligned_cols=152  Identities=12%  Similarity=0.158  Sum_probs=95.3

Q ss_pred             ccccceEeccCCcCCcceEEEcCCCC-EEEEe-CCCeEEEEec--CC-cEEE--eeeccCcCccCeEEcCCCC-EEEEeC
Q 026389           64 DIQSVTRLGEGILNGPEDVCVDRNGV-LYTAT-RDGWIKRLHK--NG-TWEN--WKLIGGDTLLGITTTQENE-ILVCDA  135 (239)
Q Consensus        64 ~l~~~~~l~~g~~~gPe~ia~d~~G~-ly~~~-~~g~I~~~~~--~G-~~~~--~~~~~~~p~~Gl~~d~~G~-L~v~d~  135 (239)
                      .|+..+.+..+  ..|.+|+++|||+ ||++. .+++|..|+-  ++ ..+.  .......|. ++++++||+ ||+++.
T Consensus        26 ~l~~~~~~~~~--~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p~-~l~~spDg~~l~v~~~  102 (333)
T d1ri6a_          26 ALTLTQVVDVP--GQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLT-HISTDHQGQFVFVGSY  102 (333)
T ss_dssp             CEEEEEEEECS--SCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCS-EEEECTTSSEEEEEET
T ss_pred             CeEEEEEEcCC--CCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCce-EEEEcCCCCEEeeccc
Confidence            34444555544  5788999999996 77777 5788876653  33 2222  233456799 999999996 888887


Q ss_pred             CCCeEEEc--cCC-ceEEecccCCccccccccEEEcCCCC-EEEEeCCCCcCcccccccceeecCCceEEEEeCCCCe--
Q 026389          136 DKGLLKVT--EEG-VTVLASHVNGSRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNE--  209 (239)
Q Consensus       136 ~~g~~~v~--~~g-~~~l~~~~~g~~~~~pn~l~vd~dG~-iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~--  209 (239)
                      ..+.+.+.  .+. .........+  ...+.++.+++||+ +|+++..                 ...+..|+.....  
T Consensus       103 ~~~~v~~~~~~~~~~~~~~~~~~~--~~~~~~v~~s~d~~~~~~~~~~-----------------~~~i~~~~~~~~~~~  163 (333)
T d1ri6a_         103 NAGNVSVTRLEDGLPVGVVDVVEG--LDGCHSANISPDNRTLWVPALK-----------------QDRICLFTVSDDGHL  163 (333)
T ss_dssp             TTTEEEEEEEETTEEEEEEEEECC--CTTBCCCEECTTSSEEEEEEGG-----------------GTEEEEEEECTTSCE
T ss_pred             CCCceeeeccccccceecccccCC--CccceEEEeeecceeeeccccc-----------------cceeeEEEeccCCcc
Confidence            77666654  333 2222221111  23578999999995 5666543                 2455555543321  


Q ss_pred             EE-----EecCCCCCcceEEEcCCCCEEEEEeC
Q 026389          210 TS-----ILLDSLFFANGVALSKDEDYLVVCET  237 (239)
Q Consensus       210 ~~-----~~~~~l~~pnGia~s~dg~~lyvadt  237 (239)
                      ..     ........|..+++++++..+|++..
T Consensus       164 ~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~  196 (333)
T d1ri6a_         164 VAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNE  196 (333)
T ss_dssp             EEEEEEEEECSTTCCEEEEEECTTSSEEEEEET
T ss_pred             eeeeceeeeeecCCCccEEEEeccceeEEeecc
Confidence            11     11233467889999999999887753

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=98.76  E-value=2.1e-07  Score=75.88  Aligned_cols=129  Identities=12%  Similarity=0.076  Sum_probs=85.5

Q ss_pred             CCEEEEe-CCCeEEEEec--CCcEEEe--eeccCcCccCeEEcCCCC-EEEEeCCCCeEEE---ccCC--ceEEecccCC
Q 026389           88 GVLYTAT-RDGWIKRLHK--NGTWENW--KLIGGDTLLGITTTQENE-ILVCDADKGLLKV---TEEG--VTVLASHVNG  156 (239)
Q Consensus        88 G~ly~~~-~~g~I~~~~~--~G~~~~~--~~~~~~p~~Gl~~d~~G~-L~v~d~~~g~~~v---~~~g--~~~l~~~~~g  156 (239)
                      ..+|+++ .+++|+.|+.  +|..+..  .+..+.+. +|++++||+ ||++....+.+.+   +.++  .+.......+
T Consensus         4 ~~v~v~~~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~-~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~   82 (333)
T d1ri6a_           4 QTVYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQ-PMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALP   82 (333)
T ss_dssp             EEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCC-CEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECS
T ss_pred             eEEEEECCCCCcEEEEEEcCCCCeEEEEEEcCCCCEe-EEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccC
Confidence            3578777 7888888874  4544332  35668899 999999996 8899876665543   3333  3333222112


Q ss_pred             ccccccccEEEcCCCC-EEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEE---ecCCCCCcceEEEcCCCCEE
Q 026389          157 SRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSI---LLDSLFFANGVALSKDEDYL  232 (239)
Q Consensus       157 ~~~~~pn~l~vd~dG~-iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~---~~~~l~~pnGia~s~dg~~l  232 (239)
                         ..|.++++++||+ +|+++..                 .+.+..++.+......   .......|.++++++|++++
T Consensus        83 ---~~p~~l~~spDg~~l~v~~~~-----------------~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~  142 (333)
T d1ri6a_          83 ---GSLTHISTDHQGQFVFVGSYN-----------------AGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTL  142 (333)
T ss_dssp             ---SCCSEEEECTTSSEEEEEETT-----------------TTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEE
T ss_pred             ---CCceEEEEcCCCCEEeecccC-----------------CCceeeeccccccceecccccCCCccceEEEeeecceee
Confidence               3578999999995 7777643                 3556655554443322   23456678999999999999


Q ss_pred             EEEeC
Q 026389          233 VVCET  237 (239)
Q Consensus       233 yvadt  237 (239)
                      ++++.
T Consensus       143 ~~~~~  147 (333)
T d1ri6a_         143 WVPAL  147 (333)
T ss_dssp             EEEEG
T ss_pred             ecccc
Confidence            88763

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=98.71  E-value=3.5e-07  Score=77.86  Aligned_cols=147  Identities=15%  Similarity=0.127  Sum_probs=91.1

Q ss_pred             CCcceEEEcCCCC-EEEEe-CCCeEEEEe--cCCcEEEe-----eeccCcCccCeEEcCCCC-EEEEeCCCCeEEEc---
Q 026389           77 NGPEDVCVDRNGV-LYTAT-RDGWIKRLH--KNGTWENW-----KLIGGDTLLGITTTQENE-ILVCDADKGLLKVT---  143 (239)
Q Consensus        77 ~gPe~ia~d~~G~-ly~~~-~~g~I~~~~--~~G~~~~~-----~~~~~~p~~Gl~~d~~G~-L~v~d~~~g~~~v~---  143 (239)
                      ..|.+++++|+|+ +|+.+ ..++|+.++  .+|+....     ...+..|. +++++++|+ +||+....+.+.+.   
T Consensus       145 ~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr-~i~f~pdg~~~yv~~e~~~~V~v~~~~  223 (365)
T d1jofa_         145 TGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPR-WVAMHPTGNYLYALMEAGNRICEYVID  223 (365)
T ss_dssp             CCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEE-EEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred             CcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceE-EEEECCCCceEEEeccCCCEEEEEEec
Confidence            3578999999996 78777 567887765  45544321     12356788 999999995 78988777665543   


Q ss_pred             cCC-ceEE--ec------c------cCCccccccccEEEcCCC-CEEEEeCCCCcCcccccccceeecCCce--EEEEeC
Q 026389          144 EEG-VTVL--AS------H------VNGSRINLADDLIAATDG-SIYFSVASTKFGLHNWGLDLLEAKPHGK--LLKYDP  205 (239)
Q Consensus       144 ~~g-~~~l--~~------~------~~g~~~~~pn~l~vd~dG-~iy~td~~~~~~~~~~~~~~~e~~~~g~--v~~~d~  205 (239)
                      ... ..+.  ..      .      ........+.++.++||| .+|++.......            ..+.  .++.+.
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~------------~~~~i~~~~~~~  291 (365)
T d1jofa_         224 PATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFE------------LQGYIAGFKLRD  291 (365)
T ss_dssp             TTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTT------------SCCEEEEEEECT
T ss_pred             CCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCCc------------cceEEEEEEecC
Confidence            222 2111  10      0      111233457899999999 578886431110            0122  344554


Q ss_pred             CCCeEEEe------cCCCCCcceEEEcC-CCCEEEEEeC
Q 026389          206 SLNETSIL------LDSLFFANGVALSK-DEDYLVVCET  237 (239)
Q Consensus       206 ~~~~~~~~------~~~l~~pnGia~s~-dg~~lyvadt  237 (239)
                      . +.+...      ......|++++++| +|++|||++.
T Consensus       292 ~-g~~~~~~~~~~~~~~G~~p~~i~~~p~~G~~l~va~~  329 (365)
T d1jofa_         292 C-GSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDD  329 (365)
T ss_dssp             T-SCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECS
T ss_pred             C-CceeeEeEeeEEEcCCCCccEEEecCCCCCEEEEEeC
Confidence            3 322211      23457899999998 8999999974

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.71  E-value=4.9e-07  Score=78.51  Aligned_cols=150  Identities=15%  Similarity=0.128  Sum_probs=96.6

Q ss_pred             ceEeccCCcCCcceEEEcCCCC-EEEEeCCCeEEEEecC-Cc--EEEeeeccCcCccCeEEc----CCCC-EEEEeCCCC
Q 026389           68 VTRLGEGILNGPEDVCVDRNGV-LYTATRDGWIKRLHKN-GT--WENWKLIGGDTLLGITTT----QENE-ILVCDADKG  138 (239)
Q Consensus        68 ~~~l~~g~~~gPe~ia~d~~G~-ly~~~~~g~I~~~~~~-G~--~~~~~~~~~~p~~Gl~~d----~~G~-L~v~d~~~g  138 (239)
                      ...+..|  ..|.+++++|||+ +|+++.+|.|..||.+ ++  .......+..+. ++++.    +||+ ||++....+
T Consensus        55 ~~~~~~g--~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~-~~~~s~~~SpDG~~l~vs~~~~~  131 (432)
T d1qksa2          55 KTVLDTG--YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEAR-SIETSKMEGWEDKYAIAGAYWPP  131 (432)
T ss_dssp             EEEEECS--SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEE-EEEECCSTTCTTTEEEEEEEETT
T ss_pred             EEEEeCC--CCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCC-CeEEecccCCCCCEEEEEcCCCC
Confidence            3445555  4799999999996 6788899999999953 33  222234455666 77664    6896 788877666


Q ss_pred             eEEE-c-cCC--ceEEecc---cCC---ccccccccEEEcCCCC-EEEEeCCCCcCcccccccceeecCCceEEEEeCCC
Q 026389          139 LLKV-T-EEG--VTVLASH---VNG---SRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSL  207 (239)
Q Consensus       139 ~~~v-~-~~g--~~~l~~~---~~g---~~~~~pn~l~vd~dG~-iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~  207 (239)
                      .+++ | ..+  ...+...   ...   .+......+.++++|. +|++...                 .+.+..+|..+
T Consensus       132 ~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~-----------------~~~i~~~d~~~  194 (432)
T d1qksa2         132 QYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKE-----------------TGKILLVDYTD  194 (432)
T ss_dssp             EEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETT-----------------TTEEEEEETTC
T ss_pred             eEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEcc-----------------CCeEEEEEccC
Confidence            6665 4 444  3333211   111   1122345678888884 5566543                 57899998776


Q ss_pred             CeEEEe--cCCCCCcceEEEcCCCCEEEEEeC
Q 026389          208 NETSIL--LDSLFFANGVALSKDEDYLVVCET  237 (239)
Q Consensus       208 ~~~~~~--~~~l~~pnGia~s~dg~~lyvadt  237 (239)
                      .+...+  +..-..|.+++|+|||+++|++..
T Consensus       195 ~~~~~~~~i~~g~~~~~~~~spdg~~~~va~~  226 (432)
T d1qksa2         195 LNNLKTTEISAERFLHDGGLDGSHRYFITAAN  226 (432)
T ss_dssp             SSEEEEEEEECCSSEEEEEECTTSCEEEEEEG
T ss_pred             CCcceEEEEcccCccccceECCCCCEEEEecc
Confidence            543222  233467999999999999998753

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=98.62  E-value=8.6e-07  Score=75.35  Aligned_cols=143  Identities=13%  Similarity=0.057  Sum_probs=86.1

Q ss_pred             CCcceEEEcCCCC-EEEEeCCC-eEEEEecCCcEEEe--eeccCcCccCeEEcCCCC-EEEEeCC--CCeEEE---ccCC
Q 026389           77 NGPEDVCVDRNGV-LYTATRDG-WIKRLHKNGTWENW--KLIGGDTLLGITTTQENE-ILVCDAD--KGLLKV---TEEG  146 (239)
Q Consensus        77 ~gPe~ia~d~~G~-ly~~~~~g-~I~~~~~~G~~~~~--~~~~~~p~~Gl~~d~~G~-L~v~d~~--~g~~~v---~~~g  146 (239)
                      ..|..++++++|+ ||+...++ ..+.++.+++....  ...++.|. .++++++|+ +||+...  .+.+..   ..++
T Consensus        40 ~~~s~la~s~d~~~ly~~~~~~~~~~~i~~~~~~~~~~~~~~~~~p~-~v~~~~~~~~~~v~~a~~~~~~v~~~~~~~~~  118 (365)
T d1jofa_          40 EPISWMTFDHERKNIYGAAMKKWSSFAVKSPTEIVHEASHPIGGHPR-ANDADTNTRAIFLLAAKQPPYAVYANPFYKFA  118 (365)
T ss_dssp             CCCSEEEECTTSSEEEEEEBTEEEEEEEEETTEEEEEEEEECCSSGG-GGCTTSCCEEEEEEECSSTTCCEEEEEESSSC
T ss_pred             CCCCEEEEcCCCCEEEEEeCCcEEEEEEeCCCCeEEEeeecCCCCcE-EEEECCCCCEEEEEEecCCCCEEEEeEccCCC
Confidence            4567899999875 67765332 34556666654322  34567898 999999995 6776543  233322   2222


Q ss_pred             --ceEEe-----------cccCCccccccccEEEcCCCC-EEEEeCCCCcCcccccccceeecCCceEEEEeCC-CCeEE
Q 026389          147 --VTVLA-----------SHVNGSRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPS-LNETS  211 (239)
Q Consensus       147 --~~~l~-----------~~~~g~~~~~pn~l~vd~dG~-iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~-~~~~~  211 (239)
                        ..+..           ...+-+.-.++.+++++|||+ +|++|..                 ..+|++|+.+ .+.+.
T Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~d~g-----------------~d~v~~~~~~~~g~~~  181 (365)
T d1jofa_         119 GYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLT-----------------ANKLWTHRKLASGEVE  181 (365)
T ss_dssp             CEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETT-----------------TTEEEEEEECTTSCEE
T ss_pred             CcceeEeeeecceecCcccCcccCCCCcceEEEECCCCCEEEEeeCC-----------------CCEEEEEEccCCCcee
Confidence              11111           000111123578999999995 8998865                 3566666422 23332


Q ss_pred             Ee-----cCCCCCcceEEEcCCCCEEEEEeC
Q 026389          212 IL-----LDSLFFANGVALSKDEDYLVVCET  237 (239)
Q Consensus       212 ~~-----~~~l~~pnGia~s~dg~~lyvadt  237 (239)
                      ..     ......|.+++|+|||+++|++.-
T Consensus       182 ~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e  212 (365)
T d1jofa_         182 LVGSVDAPDPGDHPRWVAMHPTGNYLYALME  212 (365)
T ss_dssp             EEEEEECSSTTCCEEEEEECTTSSEEEEEET
T ss_pred             eccceeecCCCCceEEEEECCCCceEEEecc
Confidence            22     123467999999999999999864

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.52  E-value=3.2e-06  Score=69.09  Aligned_cols=146  Identities=14%  Similarity=0.127  Sum_probs=93.9

Q ss_pred             CCcceEEEcCCCC-EEEEe-CCC-eEEEEecC-CcEEEeeeccCcCccCeEEcCCCCEEEEeCCCCeE-EEc-cCC-ceE
Q 026389           77 NGPEDVCVDRNGV-LYTAT-RDG-WIKRLHKN-GTWENWKLIGGDTLLGITTTQENEILVCDADKGLL-KVT-EEG-VTV  149 (239)
Q Consensus        77 ~gPe~ia~d~~G~-ly~~~-~~g-~I~~~~~~-G~~~~~~~~~~~p~~Gl~~d~~G~L~v~d~~~g~~-~v~-~~g-~~~  149 (239)
                      ....+++|+|||+ |+++. .++ .|+.++.+ |+.+.+....+... .+++.++|+.+++....+.+ ..+ ..+ ...
T Consensus        43 ~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~~~~~~~~~v~-~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~  121 (360)
T d1k32a3          43 LRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEKFEENLGNVF-AMGVDRNGKFAVVANDRFEIMTVDLETGKPTV  121 (360)
T ss_dssp             SCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEEECCCCCCSEE-EEEECTTSSEEEEEETTSEEEEEETTTCCEEE
T ss_pred             CCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcEEEeeCCCceEE-eeeecccccccceeccccccccccccccceee
Confidence            4667899999995 44444 444 57777754 45666555566677 89999999866665555544 445 344 332


Q ss_pred             EecccCCccccccccEEEcCCCC-EEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecCCCCCcceEEEcCC
Q 026389          150 LASHVNGSRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKD  228 (239)
Q Consensus       150 l~~~~~g~~~~~pn~l~vd~dG~-iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~~l~~pnGia~s~d  228 (239)
                      +.....    ....++++.+||+ |.++.......        ......+.++.+|..+++...+........+++++||
T Consensus       122 ~~~~~~----~~~~~~~~spdg~~la~~~~~~~~~--------~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~spd  189 (360)
T d1k32a3         122 IERSRE----AMITDFTISDNSRFIAYGFPLKHGE--------TDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDAD  189 (360)
T ss_dssp             EEECSS----SCCCCEEECTTSCEEEEEEEECSST--------TCSCCEEEEEEEETTTTEEEECSCSSSBEEEEEECTT
T ss_pred             eeeccc----ccccchhhccceeeeeeeccccccc--------eeeccccceeeeccccCceeeecccccccccccccCC
Confidence            222111    2357899999995 44443221110        1122346788899988888777766666788999999


Q ss_pred             CCEEEEE
Q 026389          229 EDYLVVC  235 (239)
Q Consensus       229 g~~lyva  235 (239)
                      |++|++.
T Consensus       190 g~~l~~~  196 (360)
T d1k32a3         190 SKNLYYL  196 (360)
T ss_dssp             SCEEEEE
T ss_pred             CCEEEEE
Confidence            9988765

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.49  E-value=1.3e-06  Score=71.49  Aligned_cols=130  Identities=8%  Similarity=0.057  Sum_probs=87.2

Q ss_pred             EEcC-CCCEEEEeCCCeEEEEecCCc-EEEeeeccCcCccCeEEcCCCC-EEEEeCCC-CeEEEc--cCC-ceEEecccC
Q 026389           83 CVDR-NGVLYTATRDGWIKRLHKNGT-WENWKLIGGDTLLGITTTQENE-ILVCDADK-GLLKVT--EEG-VTVLASHVN  155 (239)
Q Consensus        83 a~d~-~G~ly~~~~~g~I~~~~~~G~-~~~~~~~~~~p~~Gl~~d~~G~-L~v~d~~~-g~~~v~--~~g-~~~l~~~~~  155 (239)
                      -|+| ||+++....+|+|+.++.++. .... ....+.. .++|.+||+ |+++.... ..+++.  ..| .+.+...  
T Consensus         9 ~fSP~dG~~~a~~~~g~v~v~d~~~~~~~~~-~~~~~v~-~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~~~~~~--   84 (360)
T d1k32a3           9 DFSPLDGDLIAFVSRGQAFIQDVSGTYVLKV-PEPLRIR-YVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEKFEEN--   84 (360)
T ss_dssp             EEEECGGGCEEEEETTEEEEECTTSSBEEEC-SCCSCEE-EEEECSSSEEEEEEEETTEEEEEEEETTTCCEEECCCC--
T ss_pred             cccCCCCCEEEEEECCeEEEEECCCCcEEEc-cCCCCEE-EEEECCCCCEEEEEEcCCCCEEEEEECCCCcEEEeeCC--
Confidence            3667 898887777889999997554 4433 3455667 899999996 44443333 355554  344 4443321  


Q ss_pred             CccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecC-CCCCcceEEEcCCCCEEEE
Q 026389          156 GSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLD-SLFFANGVALSKDEDYLVV  234 (239)
Q Consensus       156 g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~-~l~~pnGia~s~dg~~lyv  234 (239)
                         ......++++|||+..++...                 .+.++.++.++++...... .......++++|||++|.+
T Consensus        85 ---~~~v~~~~~spdg~~l~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~  144 (360)
T d1k32a3          85 ---LGNVFAMGVDRNGKFAVVAND-----------------RFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAY  144 (360)
T ss_dssp             ---CCSEEEEEECTTSSEEEEEET-----------------TSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEE
T ss_pred             ---CceEEeeeecccccccceecc-----------------ccccccccccccceeeeeecccccccchhhccceeeeee
Confidence               123678999999975555433                 4788999998887765543 3445678999999998876


Q ss_pred             Ee
Q 026389          235 CE  236 (239)
Q Consensus       235 ad  236 (239)
                      +.
T Consensus       145 ~~  146 (360)
T d1k32a3         145 GF  146 (360)
T ss_dssp             EE
T ss_pred             ec
Confidence            53

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=98.47  E-value=3.3e-06  Score=73.96  Aligned_cols=59  Identities=15%  Similarity=0.275  Sum_probs=47.7

Q ss_pred             CCcceEEEcCCCCEEEEeC---------------------------------CCeEEEEecCCcE------------EEe
Q 026389           77 NGPEDVCVDRNGVLYTATR---------------------------------DGWIKRLHKNGTW------------ENW  111 (239)
Q Consensus        77 ~gPe~ia~d~~G~ly~~~~---------------------------------~g~I~~~~~~G~~------------~~~  111 (239)
                      +.-..|++++||.||++..                                 .|+|+|++++|+.            +.|
T Consensus       144 H~gg~l~fgpDG~LYvs~Gd~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~Gkilri~~dg~~~~dnP~~~~~~~ei~  223 (450)
T d1crua_         144 HQSGRLVIGPDQKIYYTIGDQGRNQLAYLFLPNQAQHTPTQQELNGKDYHTYMGKVLRLNLDGSIPKDNPSFNGVVSHIY  223 (450)
T ss_dssp             CCEEEEEECTTSCEEEEECCTTTTSGGGTTSCCCTTCCCCHHHHHTTCCTTCSSEEEEECTTSCCCTTCCEETTEECSEE
T ss_pred             ccccceeEcCCCCEEEEecCCCcccccccccccccccCcccccccccccccccCceEEeeccccccccccccccccceEE
Confidence            4556799999999997753                                 2899999987753            356


Q ss_pred             eeccCcCccCeEEcCCCCEEEEeCC
Q 026389          112 KLIGGDTLLGITTTQENEILVCDAD  136 (239)
Q Consensus       112 ~~~~~~p~~Gl~~d~~G~L~v~d~~  136 (239)
                      +.....|. |++++++|+||++|.+
T Consensus       224 a~G~RNp~-g~~~~p~g~l~~~e~G  247 (450)
T d1crua_         224 TLGHRNPQ-GLAFTPNGKLLQSEQG  247 (450)
T ss_dssp             EBCCSEEE-EEEECTTSCEEEEEEC
T ss_pred             Eecccccc-ceeecccceeeecccc
Confidence            66667799 9999999999999875

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=98.43  E-value=7.9e-07  Score=72.31  Aligned_cols=96  Identities=13%  Similarity=0.053  Sum_probs=65.8

Q ss_pred             CeEEcCCCCEEEEeCCCCeEE-Ec-cCC--ceEEecccCCccccccccEEEcCCCC-EEEEeCCCCcCcccccccceeec
Q 026389          121 GITTTQENEILVCDADKGLLK-VT-EEG--VTVLASHVNGSRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAK  195 (239)
Q Consensus       121 Gl~~d~~G~L~v~d~~~g~~~-v~-~~g--~~~l~~~~~g~~~~~pn~l~vd~dG~-iy~td~~~~~~~~~~~~~~~e~~  195 (239)
                      |+++.++|+.+++....+.+. +| ..+  ...+. ...+   ..|.+++++|||+ +|+++..                
T Consensus         1 g~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~-~~~~---~~p~~l~~spDG~~l~v~~~~----------------   60 (346)
T d1jmxb_           1 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCV-MPDK---FGPGTAMMAPDNRTAYVLNNH----------------   60 (346)
T ss_dssp             CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEE-CSSC---CSSCEEEECTTSSEEEEEETT----------------
T ss_pred             CccCCCCCcEEEEEcCCCEEEEEECCCCCEEEEEE-cCCC---CCcceEEECCCCCEEEEEECC----------------
Confidence            677888887666554444444 55 455  22221 1111   3588999999994 7888765                


Q ss_pred             CCceEEEEeCCCCeEEEecCC-------CCCcceEEEcCCCCEEEEEeC
Q 026389          196 PHGKLLKYDPSLNETSILLDS-------LFFANGVALSKDEDYLVVCET  237 (239)
Q Consensus       196 ~~g~v~~~d~~~~~~~~~~~~-------l~~pnGia~s~dg~~lyvadt  237 (239)
                       .++|+.||..+++.......       ...|.++++++||+++|++..
T Consensus        61 -~~~v~~~d~~t~~~~~~~~~~~~~~~~~~~~~~v~~s~DG~~l~v~~~  108 (346)
T d1jmxb_          61 -YGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVN  108 (346)
T ss_dssp             -TTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEE
T ss_pred             -CCcEEEEeCccCeeeeeecccccccccCCceEEEEEecCCCEEEEEec
Confidence             58999999998876543321       236899999999999999863

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=98.35  E-value=2.8e-06  Score=71.81  Aligned_cols=109  Identities=10%  Similarity=0.129  Sum_probs=76.5

Q ss_pred             cccceEeccCCcCCcceEEEcCCCCEEEEe-C-----------------CCeEEEEecCCcEEEeeeccCcCccCeEEcC
Q 026389           65 IQSVTRLGEGILNGPEDVCVDRNGVLYTAT-R-----------------DGWIKRLHKNGTWENWKLIGGDTLLGITTTQ  126 (239)
Q Consensus        65 l~~~~~l~~g~~~gPe~ia~d~~G~ly~~~-~-----------------~g~I~~~~~~G~~~~~~~~~~~p~~Gl~~d~  126 (239)
                      |.....+....+..|.+|++..+|.+|++. .                 .+.++++++ ++.+........|+ ||++++
T Consensus       138 l~~~~~v~~~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~-~~~~~~~~~l~~pN-GI~~s~  215 (340)
T d1v04a_         138 LLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP-NDVRVVAEGFDFAN-GINISP  215 (340)
T ss_dssp             EEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECS-SCEEEEEEEESSEE-EEEECT
T ss_pred             EEEEeecCCccccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEEEEcC-CceEEEcCCCCccc-eeEECC
Confidence            444455556668899999999999999884 1                 256777764 44555566678999 999999


Q ss_pred             CC-CEEEEeCCCCeEEEc---cCC-ceEEe-cccCCccccccccEEEcC-CCCEEEEeCC
Q 026389          127 EN-EILVCDADKGLLKVT---EEG-VTVLA-SHVNGSRINLADDLIAAT-DGSIYFSVAS  179 (239)
Q Consensus       127 ~G-~L~v~d~~~g~~~v~---~~g-~~~l~-~~~~g~~~~~pn~l~vd~-dG~iy~td~~  179 (239)
                      |+ .|||++...+.+++.   .++ .+... ....    ..|+++.+|+ +|.+|++...
T Consensus       216 d~~~lyVa~t~~~~i~~y~~~~~~~l~~~~~~~l~----~~pDNi~~d~~~g~lwva~~p  271 (340)
T d1v04a_         216 DGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFD----TLVDNISVDPVTGDLWVGCHP  271 (340)
T ss_dssp             TSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEECS----SEEEEEEECTTTCCEEEEEES
T ss_pred             CCCEEEEEeCCCCeEEEEEeCCCcccceEEEecCC----CCCCccEEecCCCEEEEEECC
Confidence            98 599999887666543   333 22221 1122    3699999996 6899998644

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.32  E-value=3.9e-05  Score=62.88  Aligned_cols=137  Identities=12%  Similarity=0.106  Sum_probs=90.7

Q ss_pred             CCcceEEEcCCCCEE-EEeCCCeEEEEec-CCcEEEeeeccCcCccCeEEcCCCCEEEEeCCCCeEEEc--cCCceEEec
Q 026389           77 NGPEDVCVDRNGVLY-TATRDGWIKRLHK-NGTWENWKLIGGDTLLGITTTQENEILVCDADKGLLKVT--EEGVTVLAS  152 (239)
Q Consensus        77 ~gPe~ia~d~~G~ly-~~~~~g~I~~~~~-~G~~~~~~~~~~~p~~Gl~~d~~G~L~v~d~~~g~~~v~--~~g~~~l~~  152 (239)
                      ....++++.++|..+ +++.++.|..|+. +++............ .++++++++++++-...+.+++.  ..+......
T Consensus       184 ~~v~~l~~s~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~~~~i~-~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~  262 (337)
T d1gxra_         184 DGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIF-SLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLH  262 (337)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEE-EEEECTTSSEEEEEETTSCEEEEETTSSCEEEEC
T ss_pred             cccccccccccccccccccccccccccccccceeecccccccceE-EEEEcccccccceecccccccccccccccccccc
Confidence            345678888877544 6678999999985 454332233345566 89999999766655445656554  333221111


Q ss_pred             ccCCccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecCCCCCcceEEEcCCCCEE
Q 026389          153 HVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYL  232 (239)
Q Consensus       153 ~~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~~l~~pnGia~s~dg~~l  232 (239)
                      . ..   ...+.+++.++|+.+++-+.                 .|.|..||..+++.......-.....++|+|||++|
T Consensus       263 ~-~~---~~i~~v~~s~~g~~l~s~s~-----------------Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~s~d~~~l  321 (337)
T d1gxra_         263 L-HE---SCVLSLKFAYCGKWFVSTGK-----------------DNLLNAWRTPYGASIFQSKESSSVLSCDISVDDKYI  321 (337)
T ss_dssp             C-CS---SCEEEEEECTTSSEEEEEET-----------------TSEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEE
T ss_pred             c-cc---cccceEEECCCCCEEEEEeC-----------------CCeEEEEECCCCCEEEEccCCCCEEEEEEeCCCCEE
Confidence            1 11   23678999999987777543                 578999998877665444444567889999999988


Q ss_pred             EEE
Q 026389          233 VVC  235 (239)
Q Consensus       233 yva  235 (239)
                      +.+
T Consensus       322 ~t~  324 (337)
T d1gxra_         322 VTG  324 (337)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            765

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=98.31  E-value=2.1e-06  Score=69.64  Aligned_cols=97  Identities=11%  Similarity=0.003  Sum_probs=64.8

Q ss_pred             eEEEcCCCCEE-EEeCCCeEEEEecC-CcEE-Eee-eccCcCccCeEEcCCCC-EEEEeCCCCeEEE-c-cCC--ceEEe
Q 026389           81 DVCVDRNGVLY-TATRDGWIKRLHKN-GTWE-NWK-LIGGDTLLGITTTQENE-ILVCDADKGLLKV-T-EEG--VTVLA  151 (239)
Q Consensus        81 ~ia~d~~G~ly-~~~~~g~I~~~~~~-G~~~-~~~-~~~~~p~~Gl~~d~~G~-L~v~d~~~g~~~v-~-~~g--~~~l~  151 (239)
                      |+|++++|..+ +++.+++|..||.+ ++.. ++. .....|. ++++++||+ +||+....+.+.+ | ..+  ...+.
T Consensus         1 g~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~-~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~   79 (346)
T d1jmxb_           1 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPG-TAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHAN   79 (346)
T ss_dssp             CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSC-EEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred             CccCCCCCcEEEEEcCCCEEEEEECCCCCEEEEEEcCCCCCcc-eEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeec
Confidence            34788888655 56789999999974 4542 322 2345798 999999995 7899877665554 5 455  22221


Q ss_pred             -cccCCccccccccEEEcCCC-CEEEEeC
Q 026389          152 -SHVNGSRINLADDLIAATDG-SIYFSVA  178 (239)
Q Consensus       152 -~~~~g~~~~~pn~l~vd~dG-~iy~td~  178 (239)
                       ..........|.++++++|| .+|+++.
T Consensus        80 ~~~~~~~~~~~~~~v~~s~DG~~l~v~~~  108 (346)
T d1jmxb_          80 LSSVPGEVGRSMYSFAISPDGKEVYATVN  108 (346)
T ss_dssp             SCCSTTEEEECSSCEEECTTSSEEEEEEE
T ss_pred             ccccccccCCceEEEEEecCCCEEEEEec
Confidence             11222234568999999999 5787753

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=98.27  E-value=5.4e-06  Score=72.34  Aligned_cols=158  Identities=13%  Similarity=0.099  Sum_probs=91.1

Q ss_pred             CCcCCcceEEEc--CCC-CEEEEe-CCCeEEEEec-CCcEEEeee--ccCcCccCeEEcCCCC-EEEEeCCCCeEE----
Q 026389           74 GILNGPEDVCVD--RNG-VLYTAT-RDGWIKRLHK-NGTWENWKL--IGGDTLLGITTTQENE-ILVCDADKGLLK----  141 (239)
Q Consensus        74 g~~~gPe~ia~d--~~G-~ly~~~-~~g~I~~~~~-~G~~~~~~~--~~~~p~~Gl~~d~~G~-L~v~d~~~g~~~----  141 (239)
                      |....|.....+  +|| .||+.+ .+++|.+||. +++......  .+..|+ |+++.++|+ +||+......+.    
T Consensus        67 gd~hhP~~s~t~gtpDGr~lfV~d~~~~rVavIDl~t~k~~~ii~iP~g~gph-gi~~spdg~t~YV~~~~~~~v~~~~d  145 (441)
T d1qnia2          67 GDCHHPHISMTDGRYDGKYLFINDKANTRVARIRLDIMKTDKITHIPNVQAIH-GLRLQKVPKTNYVFCNAEFVIPQPND  145 (441)
T ss_dssp             CCBCCCEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECTTCCCEE-EEEECCSSBCCEEEEEECSCEESSCS
T ss_pred             CcccCCCcceecccCCCCEEEEEcCCCCEEEEEECCCCcEeeEEecCCCCCcc-ceEEeccCCEEEEEeccCCcccccCc
Confidence            334556554443  577 588887 7899999996 455443332  367899 999999994 788765433332    


Q ss_pred             ---------------EccCCceEEec-ccCCccccccccEEEcCCC-CEEEEeCCCCcCc---------cccc-------
Q 026389          142 ---------------VTEEGVTVLAS-HVNGSRINLADDLIAATDG-SIYFSVASTKFGL---------HNWG-------  188 (239)
Q Consensus       142 ---------------v~~~g~~~l~~-~~~g~~~~~pn~l~vd~dG-~iy~td~~~~~~~---------~~~~-------  188 (239)
                                     +|....++... ...    ..|.++++++|| .+|++...+.-..         .++.       
T Consensus       146 g~~~~~~~~~~~~~~iD~~t~~v~~qI~v~----~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~  221 (441)
T d1qnia2         146 GTDFSLDNSYTMFTAIDAETMDVAWQVIVD----GNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVER  221 (441)
T ss_dssp             SSCCCGGGEEEEEEEEETTTCSEEEEEEES----SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHH
T ss_pred             ccccccccccceEEeecCccceeeEEEecC----CCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccc
Confidence                           22111111100 111    258899999999 5788865432110         0000       


Q ss_pred             -------ccceeecCCceEEEEeC-CCCeEEEecCCCCCcceEEEcCCCCEEEEEeC
Q 026389          189 -------LDLLEAKPHGKLLKYDP-SLNETSILLDSLFFANGVALSKDEDYLVVCET  237 (239)
Q Consensus       189 -------~~~~e~~~~g~v~~~d~-~~~~~~~~~~~l~~pnGia~s~dg~~lyvadt  237 (239)
                             ...+.-.+++ +..++. .+.++...+..-..|.|++++|||+++|++..
T Consensus       222 ~~~~~~dGk~~~v~~~~-v~vvd~~~~~~v~~~IPvgksPhGv~vSPDGkyl~~~~~  277 (441)
T d1qnia2         222 IAAAVKAGNFKTIGDSK-VPVVDGRGESEFTRYIPVPKNPHGLNTSPDGKYFIANGK  277 (441)
T ss_dssp             HHHHHHTTCCBCCTTCC-CCEEECSSSCSSEEEECCBSSCCCEEECTTSCEEEEECT
T ss_pred             eEEEecCCCEEEeCCCC-cEEEEcccCCceEEEEeCCCCccCceECCCCCEEEEeCC
Confidence                   0111112233 334443 33334444455578999999999999999864

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.25  E-value=1.3e-05  Score=69.28  Aligned_cols=128  Identities=10%  Similarity=-0.036  Sum_probs=80.9

Q ss_pred             CEEEEe-CCCeEEEEecC-CcEEEeeeccCcCccCeEEcCCCC-EEEEeCCCCeEEEc-cCC-ceEEecccCCccccccc
Q 026389           89 VLYTAT-RDGWIKRLHKN-GTWENWKLIGGDTLLGITTTQENE-ILVCDADKGLLKVT-EEG-VTVLASHVNGSRINLAD  163 (239)
Q Consensus        89 ~ly~~~-~~g~I~~~~~~-G~~~~~~~~~~~p~~Gl~~d~~G~-L~v~d~~~g~~~v~-~~g-~~~l~~~~~g~~~~~pn  163 (239)
                      .++++. .+|+|..||.+ ++.......+..|+ +++|.+||+ +|+++....+..++ ..+ .+.......+   ..+.
T Consensus        33 ~~~v~~~d~g~v~v~D~~t~~v~~~~~~g~~~~-~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~---~~~~  108 (432)
T d1qksa2          33 LFSVTLRDAGQIALIDGSTYEIKTVLDTGYAVH-ISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIG---SEAR  108 (432)
T ss_dssp             EEEEEETTTTEEEEEETTTCCEEEEEECSSCEE-EEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECC---SEEE
T ss_pred             EEEEEEcCCCEEEEEECCCCcEEEEEeCCCCee-EEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecC---CCCC
Confidence            334444 78999999974 56544445566799 999999996 77777644333445 344 3332221112   2244


Q ss_pred             cEEE----cCCCC-EEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecCC------------CCCcceEEEc
Q 026389          164 DLIA----ATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDS------------LFFANGVALS  226 (239)
Q Consensus       164 ~l~v----d~dG~-iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~~------------l~~pnGia~s  226 (239)
                      ++++    ++||+ +|++...                 .+.+..||.++++.......            -..+.+|+++
T Consensus       109 ~~~~s~~~SpDG~~l~vs~~~-----------------~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s  171 (432)
T d1qksa2         109 SIETSKMEGWEDKYAIAGAYW-----------------PPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILAS  171 (432)
T ss_dssp             EEEECCSTTCTTTEEEEEEEE-----------------TTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEEC
T ss_pred             CeEEecccCCCCCEEEEEcCC-----------------CCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEEC
Confidence            5544    56895 7787654                 47888899888876544321            1234578899


Q ss_pred             CCCCEEEEEeC
Q 026389          227 KDEDYLVVCET  237 (239)
Q Consensus       227 ~dg~~lyvadt  237 (239)
                      +||+.++++-.
T Consensus       172 ~dg~~~~vs~~  182 (432)
T d1qksa2         172 HYRPEFIVNVK  182 (432)
T ss_dssp             SSSSEEEEEET
T ss_pred             CCCCEEEEEEc
Confidence            99999888753

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.25  E-value=3.7e-05  Score=65.55  Aligned_cols=149  Identities=13%  Similarity=0.124  Sum_probs=88.4

Q ss_pred             eEeccCCcCCcceEEEcCCCC-EEEEeCCCeEEEEecC-CcEEEe--eeccCcCccCeEEc----CCCC-EEEEeCCCCe
Q 026389           69 TRLGEGILNGPEDVCVDRNGV-LYTATRDGWIKRLHKN-GTWENW--KLIGGDTLLGITTT----QENE-ILVCDADKGL  139 (239)
Q Consensus        69 ~~l~~g~~~gPe~ia~d~~G~-ly~~~~~g~I~~~~~~-G~~~~~--~~~~~~p~~Gl~~d----~~G~-L~v~d~~~g~  139 (239)
                      .++..+  ..|.+++++|||+ +|+++.++.|..||.+ ++....  ...+..+. ++++.    +||+ ||++....+.
T Consensus        56 ~~l~~g--~~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~-~~~~s~~~spDG~~l~v~~~~~~~  132 (426)
T d1hzua2          56 KVIDTG--YAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEAR-SVESSKFKGYEDRYTIAGAYWPPQ  132 (426)
T ss_dssp             EEEECC--SSEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEE-EEEECCSTTCTTTEEEEEEEESSE
T ss_pred             EEEeCC--CCeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCc-ceEEeeeecCCCCEEEEeecCCCe
Confidence            445555  5799999999996 6688899999999963 442221  23344555 66655    6885 7788766676


Q ss_pred             EEEc--cCC--ceEEecc---cCCc---cccccccEEEcCCCC-EEEEeCCCCcCcccccccceeecCCceEEEEeCCCC
Q 026389          140 LKVT--EEG--VTVLASH---VNGS---RINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLN  208 (239)
Q Consensus       140 ~~v~--~~g--~~~l~~~---~~g~---~~~~pn~l~vd~dG~-iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~  208 (239)
                      +++.  ..+  ...+...   ....   .-.....++..+++. +|++...                 .+++..++....
T Consensus       133 v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~-----------------~~~i~~~~~~~~  195 (426)
T d1hzua2         133 FAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKE-----------------TGKVLLVNYKDI  195 (426)
T ss_dssp             EEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETT-----------------TTEEEEEECSSS
T ss_pred             EEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCC-----------------CCeEEEEEeccc
Confidence            6664  344  2222211   1111   111223455566663 4444432                 456666654433


Q ss_pred             e--EEEecCCCCCcceEEEcCCCCEEEEEeC
Q 026389          209 E--TSILLDSLFFANGVALSKDEDYLVVCET  237 (239)
Q Consensus       209 ~--~~~~~~~l~~pnGia~s~dg~~lyvadt  237 (239)
                      .  .......-..|.+++++++|+++|++..
T Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~  226 (426)
T d1hzua2         196 DNLTVTSIGAAPFLADGGWDSSHRYFMTAAN  226 (426)
T ss_dssp             SSCEEEEEECCSSEEEEEECTTSCEEEEEET
T ss_pred             cceeeEEeccCCccEeeeECCCCcEEEeeee
Confidence            2  1222344578999999999999998864

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.11  E-value=0.00012  Score=58.62  Aligned_cols=134  Identities=9%  Similarity=0.056  Sum_probs=86.0

Q ss_pred             EEEcCCCCEE-EEeCCCeEEEEec-CCcE-EEeeeccCcCccCeEEcCCCCEEEEeCCCCeEEEc-c-CC--ceEEeccc
Q 026389           82 VCVDRNGVLY-TATRDGWIKRLHK-NGTW-ENWKLIGGDTLLGITTTQENEILVCDADKGLLKVT-E-EG--VTVLASHV  154 (239)
Q Consensus        82 ia~d~~G~ly-~~~~~g~I~~~~~-~G~~-~~~~~~~~~p~~Gl~~d~~G~L~v~d~~~g~~~v~-~-~g--~~~l~~~~  154 (239)
                      ..+.+.+.++ ++..++.|..|+. +++. ..+........ .++++++|+++++-...+.+++. . ..  ...+... 
T Consensus       190 ~~~~~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~h~~~i~-~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~-  267 (340)
T d1tbga_         190 LSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDIN-AICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHD-  267 (340)
T ss_dssp             EEECTTSSEEEEEETTTEEEEEETTTTEEEEEECCCSSCEE-EEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCT-
T ss_pred             eccccccceeEEeecCceEEEEECCCCcEEEEEeCCCCCeE-EEEECCCCCEEEEEeCCCeEEEEeecccccccccccc-
Confidence            4444555555 5568899998885 3443 33333334456 89999999877776666777665 2 33  2222111 


Q ss_pred             CCccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecCC-CCCcceEEEcCCCCEEE
Q 026389          155 NGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDS-LFFANGVALSKDEDYLV  233 (239)
Q Consensus       155 ~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~~-l~~pnGia~s~dg~~ly  233 (239)
                        ........++++++|++.++.+.                 .|.|..||..+++......+ -...+.|+|+||+++|+
T Consensus       268 --~~~~~i~~~~~s~~~~~l~~g~~-----------------dg~i~iwd~~~~~~~~~~~~H~~~V~~l~~s~d~~~l~  328 (340)
T d1tbga_         268 --NIICGITSVSFSKSGRLLLAGYD-----------------DFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVA  328 (340)
T ss_dssp             --TCCSCEEEEEECSSSCEEEEEET-----------------TSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEE
T ss_pred             --cccCceEEEEECCCCCEEEEEEC-----------------CCEEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEE
Confidence              11233578999999987776544                 57899999877766555443 34458899999999877


Q ss_pred             EEe
Q 026389          234 VCE  236 (239)
Q Consensus       234 vad  236 (239)
                      .+.
T Consensus       329 s~s  331 (340)
T d1tbga_         329 TGS  331 (340)
T ss_dssp             EEE
T ss_pred             EEc
Confidence            653

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.06  E-value=0.00014  Score=59.23  Aligned_cols=137  Identities=10%  Similarity=0.104  Sum_probs=88.1

Q ss_pred             CCcceEEEcCCCCEE-EEeCCCeEEEEecCC-c--EE-EeeeccCcCccCeEEcCCCCEEEEeCC--CCeEEEc--cCC-
Q 026389           77 NGPEDVCVDRNGVLY-TATRDGWIKRLHKNG-T--WE-NWKLIGGDTLLGITTTQENEILVCDAD--KGLLKVT--EEG-  146 (239)
Q Consensus        77 ~gPe~ia~d~~G~ly-~~~~~g~I~~~~~~G-~--~~-~~~~~~~~p~~Gl~~d~~G~L~v~d~~--~g~~~v~--~~g-  146 (239)
                      ..-.+++|.|+|++. +++.+|.|..|+... +  .. .+....+... .+++.++|+++++-..  ...+++.  +.+ 
T Consensus        59 ~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~-~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~  137 (311)
T d1nr0a1          59 HQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVK-DISWDSESKRIAAVGEGRERFGHVFLFDTGT  137 (311)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEE-EEEECTTSCEEEEEECCSSCSEEEEETTTCC
T ss_pred             CCEEEEEEeCCCCeEeccccCceEeeeeeeccccccccccccccCccc-ccccccccccccccccccccccccccccccc
Confidence            345678999999766 667999999998633 2  22 2222334456 8999999976555332  2344443  444 


Q ss_pred             -ceEEecccCCccccccccEEEcCCCC-EEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecCCC-CCcceE
Q 026389          147 -VTVLASHVNGSRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSL-FFANGV  223 (239)
Q Consensus       147 -~~~l~~~~~g~~~~~pn~l~vd~dG~-iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~~l-~~pnGi  223 (239)
                       ...+.    +. ....+.++++++|. ++++.+.                 .|.|..||..+++........ ...+.+
T Consensus       138 ~~~~l~----~h-~~~v~~v~~~~~~~~~l~sgs~-----------------d~~i~i~d~~~~~~~~~~~~~~~~i~~v  195 (311)
T d1nr0a1         138 SNGNLT----GQ-ARAMNSVDFKPSRPFRIISGSD-----------------DNTVAIFEGPPFKFKSTFGEHTKFVHSV  195 (311)
T ss_dssp             BCBCCC----CC-SSCEEEEEECSSSSCEEEEEET-----------------TSCEEEEETTTBEEEEEECCCSSCEEEE
T ss_pred             cccccc----cc-ccccccccccccceeeeccccc-----------------cccccccccccccccccccccccccccc
Confidence             22221    11 12357899999985 4555433                 478889998877766655443 345899


Q ss_pred             EEcCCCCEEEEEe
Q 026389          224 ALSKDEDYLVVCE  236 (239)
Q Consensus       224 a~s~dg~~lyvad  236 (239)
                      +++||+++++++.
T Consensus       196 ~~~p~~~~l~~~~  208 (311)
T d1nr0a1         196 RYNPDGSLFASTG  208 (311)
T ss_dssp             EECTTSSEEEEEE
T ss_pred             ccCcccccccccc
Confidence            9999999887654

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.05  E-value=2.1e-05  Score=67.11  Aligned_cols=143  Identities=10%  Similarity=0.014  Sum_probs=82.2

Q ss_pred             CCcceEEEcCC--CCEEEEe-CCCeEEEEec-CCcEEEeeeccCcCccCeEEcCCCC-EEEEeCCCCeEEEc-cCC-ceE
Q 026389           77 NGPEDVCVDRN--GVLYTAT-RDGWIKRLHK-NGTWENWKLIGGDTLLGITTTQENE-ILVCDADKGLLKVT-EEG-VTV  149 (239)
Q Consensus        77 ~gPe~ia~d~~--G~ly~~~-~~g~I~~~~~-~G~~~~~~~~~~~p~~Gl~~d~~G~-L~v~d~~~g~~~v~-~~g-~~~  149 (239)
                      ..|..+.++.+  +.++++. .+|+|..||. +++.......+..|. +++|.+||+ ||++.....+..++ ..+ ...
T Consensus        19 ~~p~~~~~~~d~~~~~~V~~~~dg~v~vwD~~t~~~~~~l~~g~~~~-~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~   97 (426)
T d1hzua2          19 DRPKKQLNDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYAVH-ISRMSASGRYLLVIGRDARIDMIDLWAKEPTK   97 (426)
T ss_dssp             GSCSSCCSCCCGGGEEEEEETTTTEEEEEETTTCSEEEEEECCSSEE-EEEECTTSCEEEEEETTSEEEEEETTSSSCEE
T ss_pred             cCCCcccccCCCCeEEEEEEcCCCEEEEEECCCCcEEEEEeCCCCee-EEEECCCCCEEEEEeCCCCEEEEEccCCceeE
Confidence            34444455543  3345554 7899999996 466543344566799 999999996 67776543333444 444 333


Q ss_pred             EecccCCc-cccccccEEEcCCCC-EEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecCC-----------
Q 026389          150 LASHVNGS-RINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDS-----------  216 (239)
Q Consensus       150 l~~~~~g~-~~~~pn~l~vd~dG~-iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~~-----------  216 (239)
                      ......+. +......+++.|||+ +|++...                 .+.+..+|..+++.......           
T Consensus        98 ~~~i~~~~~~~~~~~s~~~spDG~~l~v~~~~-----------------~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~  160 (426)
T d1hzua2          98 VAEIKIGIEARSVESSKFKGYEDRYTIAGAYW-----------------PPQFAIMDGETLEPKQIVSTRGMTVDTQTYH  160 (426)
T ss_dssp             EEEEECCSEEEEEEECCSTTCTTTEEEEEEEE-----------------SSEEEEEETTTCCEEEEEECCEECSSSCCEE
T ss_pred             EEEEeCCCCCcceEEeeeecCCCCEEEEeecC-----------------CCeEEEEcCCccceeEEeeccCCCccceeec
Confidence            22211111 112223344456895 6777543                 35677788877765444321           


Q ss_pred             -CCCcceEEEcCCCCEEEEEeC
Q 026389          217 -LFFANGVALSKDEDYLVVCET  237 (239)
Q Consensus       217 -l~~pnGia~s~dg~~lyvadt  237 (239)
                       -..+..++.++|++.++++..
T Consensus       161 ~~~~~~~i~~s~d~~~~~~~~~  182 (426)
T d1hzua2         161 PEPRVAAIIASHEHPEFIVNVK  182 (426)
T ss_dssp             SCCCEEEEEECSSSSEEEEEET
T ss_pred             CCCceeEEEECCCCCEEEEecC
Confidence             112345777888888877654

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.02  E-value=0.0001  Score=58.69  Aligned_cols=146  Identities=18%  Similarity=0.219  Sum_probs=86.9

Q ss_pred             ceEeccCCcCCcceEEEcCCCCEE-EEeCCCeEEEEec-CCcEEE-eeecc-CcCccCeEEcCCCCEEEEeCCCCeEEEc
Q 026389           68 VTRLGEGILNGPEDVCVDRNGVLY-TATRDGWIKRLHK-NGTWEN-WKLIG-GDTLLGITTTQENEILVCDADKGLLKVT  143 (239)
Q Consensus        68 ~~~l~~g~~~gPe~ia~d~~G~ly-~~~~~g~I~~~~~-~G~~~~-~~~~~-~~p~~Gl~~d~~G~L~v~d~~~g~~~v~  143 (239)
                      +.++..|=-..=.+++++++|.+. +++.||.|..||. +|+... +.... .... .+++.++|+++++.....+...+
T Consensus         4 ~~~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~-~v~~~~~g~~~~~~~d~~v~~~~   82 (299)
T d1nr0a2           4 IDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMIT-GIKTTSKGDLFTVSWDDHLKVVP   82 (299)
T ss_dssp             EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEE-EEEECTTSCEEEEETTTEEEEEC
T ss_pred             cceEcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEE-EEEeeccceeecccceeeEEEec
Confidence            344555544456689999998754 6779999999985 455432 22222 2334 78999999999887755554444


Q ss_pred             cCC--ceEEecccCCccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecCCCCCcc
Q 026389          144 EEG--VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFAN  221 (239)
Q Consensus       144 ~~g--~~~l~~~~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~~l~~pn  221 (239)
                      ..+  ........ ......+..+++.++|++.++...                  +.+..|+..  +...... .....
T Consensus        83 ~~~~~~~~~~~~~-~~~~~~~~~~~~s~~g~~~~~~~~------------------~~i~~~~~~--~~~~~~~-~~~~~  140 (299)
T d1nr0a2          83 AGGSGVDSSKAVA-NKLSSQPLGLAVSADGDIAVAACY------------------KHIAIYSHG--KLTEVPI-SYNSS  140 (299)
T ss_dssp             SSSSSSCTTSCCE-EECSSCEEEEEECTTSSCEEEEES------------------SEEEEEETT--EEEEEEC-SSCEE
T ss_pred             cCCcccccccccc-cccccccccccccccccccccccc------------------ccccccccc--ccccccc-ccccc
Confidence            222  11110000 001124678899999977666533                  456667643  3322222 23467


Q ss_pred             eEEEcCCCCEEEEEe
Q 026389          222 GVALSKDEDYLVVCE  236 (239)
Q Consensus       222 Gia~s~dg~~lyvad  236 (239)
                      .++++||++.|++..
T Consensus       141 ~~~~s~~~~~l~~g~  155 (299)
T d1nr0a2         141 CVALSNDKQFVAVGG  155 (299)
T ss_dssp             EEEECTTSCEEEEEE
T ss_pred             ccccccccccccccc
Confidence            788999988776653

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.02  E-value=0.00011  Score=60.96  Aligned_cols=139  Identities=11%  Similarity=-0.007  Sum_probs=79.8

Q ss_pred             CcceEEEcCCCCEE-EEeCCCeEEEEecC-CcEEEee---eccCcCccCeEEcCCCCEEEEeCCCCeEEEc--cCC--ce
Q 026389           78 GPEDVCVDRNGVLY-TATRDGWIKRLHKN-GTWENWK---LIGGDTLLGITTTQENEILVCDADKGLLKVT--EEG--VT  148 (239)
Q Consensus        78 gPe~ia~d~~G~ly-~~~~~g~I~~~~~~-G~~~~~~---~~~~~p~~Gl~~d~~G~L~v~d~~~g~~~v~--~~g--~~  148 (239)
                      .-.+++|+|+|++. +++.|+.|..|+.+ ++.+...   ....... .++++++|+.+++-...+.+++.  ...  ..
T Consensus        53 ~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~~~~v~-~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~  131 (371)
T d1k8kc_          53 QVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAAR-CVRWAPNEKKFAVGSGSRVISICYFEQENDWW  131 (371)
T ss_dssp             CEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEE-EEEECTTSSEEEEEETTSSEEEEEEETTTTEE
T ss_pred             CEEEEEECCCCCEEEEEECCCeEEEEeeccccccccccccccccccc-ccccccccccceeecccCcceeeeeecccccc
Confidence            34788999988755 56689999998864 3332221   1223355 88999999866665556655553  222  22


Q ss_pred             EEecccCCccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCe-------------------
Q 026389          149 VLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNE-------------------  209 (239)
Q Consensus       149 ~l~~~~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~-------------------  209 (239)
                      .......+. -.....++++|+|..+++.+.                 .|.+..||...+.                   
T Consensus       132 ~~~~~~~~~-~~~v~~v~~~p~~~~l~s~s~-----------------D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (371)
T d1k8kc_         132 VCKHIKKPI-RSTVLSLDWHPNSVLLAAGSC-----------------DFKCRIFSAYIKEVEERPAPTPWGSKMPFGEL  193 (371)
T ss_dssp             EEEEECTTC-CSCEEEEEECTTSSEEEEEET-----------------TSCEEEEECCCTTTSCCCCCBTTBSCCCTTCE
T ss_pred             ccccccccc-ccccccccccccccceecccc-----------------CcEEEEEeeccCccccccccccccccccceee
Confidence            222111111 123567889999987766433                 2444445433211                   


Q ss_pred             EEEecCCCCCcceEEEcCCCCEEEEE
Q 026389          210 TSILLDSLFFANGVALSKDEDYLVVC  235 (239)
Q Consensus       210 ~~~~~~~l~~pnGia~s~dg~~lyva  235 (239)
                      +..........++++|+|||++|++.
T Consensus       194 ~~~~~~~~~~v~~~~~s~~g~~l~s~  219 (371)
T d1k8kc_         194 MFESSSSCGWVHGVCFSANGSRVAWV  219 (371)
T ss_dssp             EEECCCCSSCEEEEEECSSSSEEEEE
T ss_pred             eeeccCccCcEEEEEeeccccccccc
Confidence            11111223345789999999987655

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.96  E-value=9.2e-05  Score=58.93  Aligned_cols=132  Identities=18%  Similarity=0.199  Sum_probs=86.8

Q ss_pred             cceEEEcCCCCEEEEeCCCeEEEEecCCc-----EEEeeeccCcCccCeEEcCCCCEEEEeCCCCeEEEccCC--ceEEe
Q 026389           79 PEDVCVDRNGVLYTATRDGWIKRLHKNGT-----WENWKLIGGDTLLGITTTQENEILVCDADKGLLKVTEEG--VTVLA  151 (239)
Q Consensus        79 Pe~ia~d~~G~ly~~~~~g~I~~~~~~G~-----~~~~~~~~~~p~~Gl~~d~~G~L~v~d~~~g~~~v~~~g--~~~l~  151 (239)
                      -.++++.++|.++++..++.|..++..+.     ..........+. .+++.++|+++++..... +.+...+  .+...
T Consensus        58 v~~v~~~~~g~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~g~~~~~~~~~~-i~~~~~~~~~~~~~  135 (299)
T d1nr0a2          58 ITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPL-GLAVSADGDIAVAACYKH-IAIYSHGKLTEVPI  135 (299)
T ss_dssp             EEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEE-EEEECTTSSCEEEEESSE-EEEEETTEEEEEEC
T ss_pred             EEEEEeeccceeecccceeeEEEeccCCcccccccccccccccccc-cccccccccccccccccc-cccccccccccccc
Confidence            36789999999999889999999885432     111123345677 899999998777665443 4443333  22221


Q ss_pred             cccCCccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEec--CCCCCcceEEEcCCC
Q 026389          152 SHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILL--DSLFFANGVALSKDE  229 (239)
Q Consensus       152 ~~~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~--~~l~~pnGia~s~dg  229 (239)
                      .       .....+++.++|.++++...                 .|.+..||..+++...+.  ..-...+.+++++++
T Consensus       136 ~-------~~~~~~~~s~~~~~l~~g~~-----------------dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~  191 (299)
T d1nr0a2         136 S-------YNSSCVALSNDKQFVAVGGQ-----------------DSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNG  191 (299)
T ss_dssp             S-------SCEEEEEECTTSCEEEEEET-----------------TSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTS
T ss_pred             c-------cccccccccccccccccccc-----------------ccccccccccccccccccccccccccccccccccc
Confidence            1       12456888999976665433                 478889988777654332  223456889999999


Q ss_pred             CEEEEEe
Q 026389          230 DYLVVCE  236 (239)
Q Consensus       230 ~~lyvad  236 (239)
                      ++|+++.
T Consensus       192 ~~l~~~~  198 (299)
T d1nr0a2         192 AFLVATD  198 (299)
T ss_dssp             SEEEEEE
T ss_pred             ccccccc
Confidence            9887764

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.95  E-value=0.00042  Score=56.44  Aligned_cols=135  Identities=7%  Similarity=0.030  Sum_probs=85.4

Q ss_pred             ceEEEcCCCCEE-EEeCCCeEEEEecCCc---EE-EeeeccCcCccCeEEcCCCCEEEEeCCCCeEEE-c-cCC-ceEEe
Q 026389           80 EDVCVDRNGVLY-TATRDGWIKRLHKNGT---WE-NWKLIGGDTLLGITTTQENEILVCDADKGLLKV-T-EEG-VTVLA  151 (239)
Q Consensus        80 e~ia~d~~G~ly-~~~~~g~I~~~~~~G~---~~-~~~~~~~~p~~Gl~~d~~G~L~v~d~~~g~~~v-~-~~g-~~~l~  151 (239)
                      .+++|.++|+.. +++.+|.|..|+....   .. .+........ .+++++++.++++....+.+.+ + .++ .....
T Consensus       101 ~~v~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~  179 (337)
T d1gxra_         101 RSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACY-ALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQF  179 (337)
T ss_dssp             EEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEE-EEEECTTSSEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred             EEEEEcCCCCEEEEeeccccccccccccccccccccccccccccc-cccccccccccccccccccccccccccccccccc
Confidence            578999998755 6679999999985432   21 1122223334 6778888877666555555544 4 444 22221


Q ss_pred             cccCCccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecCCCCCcceEEEcCCCCE
Q 026389          152 SHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDY  231 (239)
Q Consensus       152 ~~~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~~l~~pnGia~s~dg~~  231 (239)
                      ...    ......+++.++|...++...                 .|.+..||..+++.......-...+.++++|+++.
T Consensus       180 ~~~----~~~v~~l~~s~~~~~~~~~~~-----------------d~~v~i~d~~~~~~~~~~~~~~~i~~l~~~~~~~~  238 (337)
T d1gxra_         180 QGH----TDGASCIDISNDGTKLWTGGL-----------------DNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEW  238 (337)
T ss_dssp             CCC----SSCEEEEEECTTSSEEEEEET-----------------TSEEEEEETTTTEEEEEEECSSCEEEEEECTTSSE
T ss_pred             ccc----ccccccccccccccccccccc-----------------cccccccccccceeecccccccceEEEEEcccccc
Confidence            111    123567889999865555432                 47888999887765444444455688999999998


Q ss_pred             EEEEe
Q 026389          232 LVVCE  236 (239)
Q Consensus       232 lyvad  236 (239)
                      |+++.
T Consensus       239 l~~~~  243 (337)
T d1gxra_         239 LAVGM  243 (337)
T ss_dssp             EEEEE
T ss_pred             cceec
Confidence            87654

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.92  E-value=4.6e-05  Score=61.13  Aligned_cols=61  Identities=28%  Similarity=0.231  Sum_probs=47.4

Q ss_pred             cccccEEEcCCCC-EEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecCC------CCCcceEEEcCCCCEE
Q 026389          160 NLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDS------LFFANGVALSKDEDYL  232 (239)
Q Consensus       160 ~~pn~l~vd~dG~-iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~~------l~~pnGia~s~dg~~l  232 (239)
                      ..|.+++++|||+ +|++...                 .+.|+.||..+++.......      ...+.+++++|||+++
T Consensus        34 ~~~~~i~~spDg~~l~v~~~~-----------------~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l   96 (337)
T d1pbyb_          34 PTPMVPMVAPGGRIAYATVNK-----------------SESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTL   96 (337)
T ss_dssp             TCCCCEEECTTSSEEEEEETT-----------------TTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEE
T ss_pred             CCccEEEECCCCCEEEEEECC-----------------CCeEEEEECCCCcEEEEEecCCCcccccceeeEEEcCCCcEE
Confidence            4588999999995 6787654                 58899999998876543321      3467899999999999


Q ss_pred             EEEeC
Q 026389          233 VVCET  237 (239)
Q Consensus       233 yvadt  237 (239)
                      |++..
T Consensus        97 ~~~~~  101 (337)
T d1pbyb_          97 AIYES  101 (337)
T ss_dssp             EEEEE
T ss_pred             EEeec
Confidence            98753

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.87  E-value=0.00028  Score=58.50  Aligned_cols=138  Identities=7%  Similarity=-0.043  Sum_probs=81.3

Q ss_pred             ceEEEcCCCCEE-EEeCCCeEEEEecC-CcEEEee---eccCcCccCeEEcCCCCEEEEeCCCCeEEEc--cCC-ceEEe
Q 026389           80 EDVCVDRNGVLY-TATRDGWIKRLHKN-GTWENWK---LIGGDTLLGITTTQENEILVCDADKGLLKVT--EEG-VTVLA  151 (239)
Q Consensus        80 e~ia~d~~G~ly-~~~~~g~I~~~~~~-G~~~~~~---~~~~~p~~Gl~~d~~G~L~v~d~~~g~~~v~--~~g-~~~l~  151 (239)
                      .+++|+++|.++ +++.+|.|..|+.+ ++.+...   ...+... .++|.++|+++++-...+.+++.  .++ .+...
T Consensus        11 t~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~-~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~~~~~   89 (371)
T d1k8kc_          11 SCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVT-GVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTL   89 (371)
T ss_dssp             CEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEE-EEEEETTTTEEEEEETTSCEEEEEEETTEEEEEE
T ss_pred             EEEEECCCCCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEE-EEEECCCCCEEEEEECCCeEEEEeeccccccccc
Confidence            578999999877 56688999888864 4432222   2223345 89999999876665556667664  344 22221


Q ss_pred             cccCCccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEE--EecCCC-CCcceEEEcCC
Q 026389          152 SHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETS--ILLDSL-FFANGVALSKD  228 (239)
Q Consensus       152 ~~~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~--~~~~~l-~~pnGia~s~d  228 (239)
                      .. .+ .-.....++++|+|+.+++.+..               +.-+++.++.......  ...... .....++++||
T Consensus        90 ~~-~~-~~~~v~~i~~~p~~~~l~~~s~d---------------~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~  152 (371)
T d1k8kc_          90 VI-LR-INRAARCVRWAPNEKKFAVGSGS---------------RVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPN  152 (371)
T ss_dssp             EC-CC-CSSCEEEEEECTTSSEEEEEETT---------------SSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTT
T ss_pred             cc-cc-ccccccccccccccccceeeccc---------------Ccceeeeeeccccccccccccccccccccccccccc
Confidence            11 11 11246789999999765554331               1225555665433222  112222 23467899999


Q ss_pred             CCEEEEE
Q 026389          229 EDYLVVC  235 (239)
Q Consensus       229 g~~lyva  235 (239)
                      +++|.++
T Consensus       153 ~~~l~s~  159 (371)
T d1k8kc_         153 SVLLAAG  159 (371)
T ss_dssp             SSEEEEE
T ss_pred             ccceecc
Confidence            9977654

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=97.86  E-value=0.00072  Score=55.27  Aligned_cols=152  Identities=10%  Similarity=0.042  Sum_probs=80.3

Q ss_pred             cCCcceEEEcCCC-CEEEE-eCCCeEEEEecCC-cEEEeee-----ccCc--CccCeEEcCCCCEEEEeCCCCeEEEcc-
Q 026389           76 LNGPEDVCVDRNG-VLYTA-TRDGWIKRLHKNG-TWENWKL-----IGGD--TLLGITTTQENEILVCDADKGLLKVTE-  144 (239)
Q Consensus        76 ~~gPe~ia~d~~G-~ly~~-~~~g~I~~~~~~G-~~~~~~~-----~~~~--p~~Gl~~d~~G~L~v~d~~~g~~~v~~-  144 (239)
                      ...|.++++.++| .+|++ ..++++..++.+. +......     ....  +. .+..+.++.++.......++.++. 
T Consensus       164 ~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~  242 (373)
T d2madh_         164 LSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQ-PAQANKSGRIVWPVYSGKILQADIS  242 (373)
T ss_pred             eccceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceee-eEEECCCceEEEecCCceEEEEEcC
Confidence            3567788888877 45544 4889998888543 2221111     1112  22 344444444333333233333332 


Q ss_pred             CC-ceEEec--cc------CCccccccccEEEcCCC-CEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEec
Q 026389          145 EG-VTVLAS--HV------NGSRINLADDLIAATDG-SIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILL  214 (239)
Q Consensus       145 ~g-~~~l~~--~~------~g~~~~~pn~l~vd~dG-~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~  214 (239)
                      .+ ...+..  ..      .+........+++.++| .+|+......        ........+.+..+|..+++....+
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~--------~~~~~~~~~~v~~~d~~t~~~~~~~  314 (373)
T d2madh_         243 AAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQS--------AWKLHAAAKEVTSVTGLVGQTSSQI  314 (373)
T ss_pred             CCeEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCc--------eEEeecCCCeEEEEECCCCcEEEEe
Confidence            22 211110  00      00011234567888887 4555443211        1122334578899999888766555


Q ss_pred             CCCCCcceEEEcCCCCEE-EEEe
Q 026389          215 DSLFFANGVALSKDEDYL-VVCE  236 (239)
Q Consensus       215 ~~l~~pnGia~s~dg~~l-yvad  236 (239)
                      ..-..|.+++|+|||+.+ |++.
T Consensus       315 ~~~~~~~~~a~spDG~~~l~vt~  337 (373)
T d2madh_         315 SLGHDVDAISVAQDGGPDLYALS  337 (373)
T ss_pred             cCCCCeeEEEECCCCCEEEEEEe
Confidence            555779999999999974 5554

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.81  E-value=0.00053  Score=55.52  Aligned_cols=134  Identities=11%  Similarity=-0.064  Sum_probs=77.5

Q ss_pred             cCCC-CEEEEe-----CCCeEEEEec-CCcEEEeeeccCcCccCeEEcCCCC-EEEEeCC---------CCeEEE-c-cC
Q 026389           85 DRNG-VLYTAT-----RDGWIKRLHK-NGTWENWKLIGGDTLLGITTTQENE-ILVCDAD---------KGLLKV-T-EE  145 (239)
Q Consensus        85 d~~G-~ly~~~-----~~g~I~~~~~-~G~~~~~~~~~~~p~~Gl~~d~~G~-L~v~d~~---------~g~~~v-~-~~  145 (239)
                      .||| ++|+.+     ..++|+.||. .|+...... .+... ++++.+||+ |||++..         .+.+++ | .+
T Consensus        10 spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~-~g~~~-~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t   87 (355)
T d2bbkh_          10 APDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMID-GGFLP-NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVT   87 (355)
T ss_dssp             CCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEE-ECSSC-EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTT
T ss_pred             CCCCCEEEEEecccCCCcCeEEEEECCCCcEEEEEE-CCCCC-ceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCC
Confidence            4566 577765     2457999986 455433233 34555 899999995 8887642         234444 4 34


Q ss_pred             C--ceEEeccc--CCccccccccEEEcCCC-CEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecCC----
Q 026389          146 G--VTVLASHV--NGSRINLADDLIAATDG-SIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDS----  216 (239)
Q Consensus       146 g--~~~l~~~~--~g~~~~~pn~l~vd~dG-~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~~----  216 (239)
                      +  ...+....  ...-...|+.++++++| .+|+.+...                ...+..++..+++.......    
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~  151 (355)
T d2bbkh_          88 LLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSP----------------APAVGVVDLEGKAFKRMLDVPDCY  151 (355)
T ss_dssp             CCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSS----------------SCEEEEEETTTTEEEEEEECCSEE
T ss_pred             CCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCC----------------CceeeeeecCCCcEeeEEecCCcc
Confidence            5  22222111  11122458899999998 577776541                24556666666654332211    


Q ss_pred             ----CCCcceEEEcCCCCEEEEEe
Q 026389          217 ----LFFANGVALSKDEDYLVVCE  236 (239)
Q Consensus       217 ----l~~pnGia~s~dg~~lyvad  236 (239)
                          ......+++++||+.+++..
T Consensus       152 ~~~~~~~~~~~~~~~dg~~~~v~~  175 (355)
T d2bbkh_         152 HIFPTAPDTFFMHCRDGSLAKVAF  175 (355)
T ss_dssp             EEEEEETTEEEEEETTSCEEEEEC
T ss_pred             eEeecCCcceEEEcCCCCEEEEEe
Confidence                12234578888988888754

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.80  E-value=0.00023  Score=58.95  Aligned_cols=40  Identities=10%  Similarity=-0.011  Sum_probs=30.5

Q ss_pred             ceEEEEeCCCCeEEEecCCCCCcceEEEcCCCC-EEEEEeC
Q 026389          198 GKLLKYDPSLNETSILLDSLFFANGVALSKDED-YLVVCET  237 (239)
Q Consensus       198 g~v~~~d~~~~~~~~~~~~l~~pnGia~s~dg~-~lyvadt  237 (239)
                      .+|+.+|.++++....+..-..+++++|+|||+ .||++..
T Consensus       294 ~~v~v~D~~t~~~~~~~~~~~~~~~~a~spDG~~~ly~s~~  334 (368)
T d1mdah_         294 ENTSSVTASVGQTSGPISNGHDSDAIIAAQDGASDNYANSA  334 (368)
T ss_dssp             EEEEEEESSSCCEEECCEEEEEECEEEECCSSSCEEEEEET
T ss_pred             ceEEEEECCCCcEeEEecCCCceeEEEECCCCCEEEEEEeC
Confidence            568889998887655444446789999999997 5788754

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.74  E-value=0.0015  Score=52.79  Aligned_cols=139  Identities=8%  Similarity=0.048  Sum_probs=82.4

Q ss_pred             CcceEEEcCCCC--EEEEeCCCeEEEEecCC-cEEEeeec-cCcCccCeEEcCCCCEEEEeCCCCeEEEc--cCC--ceE
Q 026389           78 GPEDVCVDRNGV--LYTATRDGWIKRLHKNG-TWENWKLI-GGDTLLGITTTQENEILVCDADKGLLKVT--EEG--VTV  149 (239)
Q Consensus        78 gPe~ia~d~~G~--ly~~~~~g~I~~~~~~G-~~~~~~~~-~~~p~~Gl~~d~~G~L~v~d~~~g~~~v~--~~g--~~~  149 (239)
                      .-.+++|+++|.  +.+++.++.|..|+... +....... ..... .++++++|+++++-...+.+++.  .++  ...
T Consensus       148 ~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~~~~~~~~~~~i~-~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~  226 (311)
T d1nr0a1         148 AMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVH-SVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGV  226 (311)
T ss_dssp             CEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEE-EEEECTTSSEEEEEETTSCEEEEETTTCCEEEE
T ss_pred             ccccccccccceeeeccccccccccccccccccccccccccccccc-ccccCcccccccccccccccccccccccccccc
Confidence            346788998875  33567899999998643 33222222 23345 89999999877766556666664  344  222


Q ss_pred             Eecc---cCCccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecC-CCCCc-ceEE
Q 026389          150 LASH---VNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLD-SLFFA-NGVA  224 (239)
Q Consensus       150 l~~~---~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~-~l~~p-nGia  224 (239)
                      +...   ..+. -...+.++++++|+..+|-+.                 .|.|..||..+++....+. .-... .-+.
T Consensus       227 ~~~~~~~~~~h-~~~V~~~~~s~~~~~l~tgs~-----------------Dg~v~iwd~~t~~~~~~l~~~~~~~~~~~~  288 (311)
T d1nr0a1         227 FEDDSLKNVAH-SGSVFGLTWSPDGTKIASASA-----------------DKTIKIWNVATLKVEKTIPVGTRIEDQQLG  288 (311)
T ss_dssp             CBCTTSSSCSS-SSCEEEEEECTTSSEEEEEET-----------------TSEEEEEETTTTEEEEEEECCSSGGGCEEE
T ss_pred             ccccccccccc-cccccccccCCCCCEEEEEeC-----------------CCeEEEEECCCCcEEEEEECCCCccceEEE
Confidence            2111   0110 123578999999987777543                 5789999988887644332 21112 2233


Q ss_pred             EcCCCCEEEEE
Q 026389          225 LSKDEDYLVVC  235 (239)
Q Consensus       225 ~s~dg~~lyva  235 (239)
                      +.++++.|+.+
T Consensus       289 ~~~~~~~l~s~  299 (311)
T d1nr0a1         289 IIWTKQALVSI  299 (311)
T ss_dssp             EEECSSCEEEE
T ss_pred             EEecCCEEEEE
Confidence            44455556554

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.71  E-value=0.00026  Score=59.17  Aligned_cols=134  Identities=16%  Similarity=0.155  Sum_probs=85.3

Q ss_pred             cceEEEcCCCCEEEEeCCCeEEEEecC-CcE-EEeee------ccCcCccCeEEcCCCCEEEEeCCC---CeEEEc--cC
Q 026389           79 PEDVCVDRNGVLYTATRDGWIKRLHKN-GTW-ENWKL------IGGDTLLGITTTQENEILVCDADK---GLLKVT--EE  145 (239)
Q Consensus        79 Pe~ia~d~~G~ly~~~~~g~I~~~~~~-G~~-~~~~~------~~~~p~~Gl~~d~~G~L~v~d~~~---g~~~v~--~~  145 (239)
                      ..++++.++|.|.+++.||.|..|+.. ++. ..+..      ...... .+++.++|+++++-...   +.+++.  ..
T Consensus       187 ~~~v~~s~dg~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~-~l~~spdg~~l~sgs~D~t~~~i~lwd~~~  265 (393)
T d1sq9a_         187 ATSVDISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIR-SVKFSPQGSLLAIAHDSNSFGCITLYETEF  265 (393)
T ss_dssp             CCEEEECTTSEEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEE-EEEECSSTTEEEEEEEETTEEEEEEEETTT
T ss_pred             EEEEEECCCCEEEEEeCCCcEEEEeecccccccccccccccccccceEE-EcccccccceeeeecCCCCcceeeeccccc
Confidence            557899999988888899999999864 432 22211      112334 78899999877765332   456664  45


Q ss_pred             C--ceEEecc---------cCCccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEec
Q 026389          146 G--VTVLASH---------VNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILL  214 (239)
Q Consensus       146 g--~~~l~~~---------~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~  214 (239)
                      |  ...+...         ..|. -...+.+++.|||++.+|.+.                 .|.|..||.++++....+
T Consensus       266 g~~~~~l~~~~~~~~~~~~~~gH-~~~V~~l~fspd~~~l~S~s~-----------------D~~v~vWd~~~g~~~~~l  327 (393)
T d1sq9a_         266 GERIGSLSVPTHSSQASLGEFAH-SSWVMSLSFNDSGETLCSAGW-----------------DGKLRFWDVKTKERITTL  327 (393)
T ss_dssp             CCEEEEECBC--------CCBSB-SSCEEEEEECSSSSEEEEEET-----------------TSEEEEEETTTTEEEEEE
T ss_pred             ceeeeeeccccccccceeeeecc-cCceeeeccCCCCCeeEEECC-----------------CCEEEEEECCCCCEEEEE
Confidence            5  3333211         0111 123678999999998887654                 589999999888765444


Q ss_pred             CCC-----CCcceEEEcCCCCE
Q 026389          215 DSL-----FFANGVALSKDEDY  231 (239)
Q Consensus       215 ~~l-----~~pnGia~s~dg~~  231 (239)
                      .+-     .....++++++++.
T Consensus       328 ~gH~~~v~~~~~~~~~~~~~~~  349 (393)
T d1sq9a_         328 NMHCDDIEIEEDILAVDEHGDS  349 (393)
T ss_dssp             ECCGGGCSSGGGCCCBCTTSCB
T ss_pred             CCcCCcccCCccEEEECCCCCE
Confidence            321     12345677777764

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=97.60  E-value=0.0023  Score=52.07  Aligned_cols=52  Identities=17%  Similarity=0.127  Sum_probs=40.8

Q ss_pred             cccccEEEcCCCC--EEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecC-CCCCcceEEEcCC
Q 026389          160 NLADDLIAATDGS--IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLD-SLFFANGVALSKD  228 (239)
Q Consensus       160 ~~pn~l~vd~dG~--iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~-~l~~pnGia~s~d  228 (239)
                      ..++++++++||+  +|++...                 .+.|+.||..+++....+. .-..|+.|++..+
T Consensus       318 ~~~~~~a~spDG~~~l~vt~~~-----------------d~~v~v~D~~tg~~~~~~~~~g~~P~~l~~~~~  372 (373)
T d2madh_         318 HDVDAISVAQDGGPDLYALSAG-----------------TEVLHIYDAGAGDQDQSTVELGSGPQVLSVMNE  372 (373)
T ss_pred             CCeeEEEECCCCCEEEEEEeCC-----------------CCeEEEEECCCCCEEEEECCCCCCCcEEEEecC
Confidence            3578999999996  6677654                 5789999999888766665 4588999998754

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.55  E-value=0.0052  Score=48.41  Aligned_cols=158  Identities=8%  Similarity=0.003  Sum_probs=82.7

Q ss_pred             CCcceEEEcCCCCEE-EEeCCCeEEEEec-CCcE-EEeeeccCcCccCeEEcCCCCEEEEeCCCCeEEEc--cCC---ce
Q 026389           77 NGPEDVCVDRNGVLY-TATRDGWIKRLHK-NGTW-ENWKLIGGDTLLGITTTQENEILVCDADKGLLKVT--EEG---VT  148 (239)
Q Consensus        77 ~gPe~ia~d~~G~ly-~~~~~g~I~~~~~-~G~~-~~~~~~~~~p~~Gl~~d~~G~L~v~d~~~g~~~v~--~~g---~~  148 (239)
                      ..=.+++|+++|.++ +++.||.|..|+. +++. ..+........ .+++.++|+++++....+.+.+.  ...   ..
T Consensus        56 ~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~~v~-~v~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~  134 (340)
T d1tbga_          56 AKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVM-TCAYAPSGNYVACGGLDNICSIYNLKTREGNVR  134 (340)
T ss_dssp             SCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEECSCSCEE-EEEECTTSSEEEEEETTCCEEEEESSSSCSCCC
T ss_pred             CCEEEEEECCCCCEEEEEECCCceeeeecccceeEEEEecccccEE-eeEeeccceeeeeecccceeecccccccccccc
Confidence            345678999988755 6779999999996 4543 33332334455 89999999876665555555443  211   11


Q ss_pred             EEecccCCcc--------ccccccEEEcCCCCEEEEeCCCCcCcc---------------cccccceeecCCceEEEEeC
Q 026389          149 VLASHVNGSR--------INLADDLIAATDGSIYFSVASTKFGLH---------------NWGLDLLEAKPHGKLLKYDP  205 (239)
Q Consensus       149 ~l~~~~~g~~--------~~~pn~l~vd~dG~iy~td~~~~~~~~---------------~~~~~~~e~~~~g~v~~~d~  205 (239)
                      ... ...+..        .....-.....++..............               .....++.+...+.+..||.
T Consensus       135 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i~d~  213 (340)
T d1tbga_         135 VSR-ELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDV  213 (340)
T ss_dssp             EEE-EECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTTEEEEEET
T ss_pred             cce-ecccccccccccccccccccccccccccccccccccccccccccccceeEeeeccccccceeEEeecCceEEEEEC
Confidence            110 011100        000001111112222221111100000               00011233556788999998


Q ss_pred             CCCeEEEecCC-CCCcceEEEcCCCCEEEEEe
Q 026389          206 SLNETSILLDS-LFFANGVALSKDEDYLVVCE  236 (239)
Q Consensus       206 ~~~~~~~~~~~-l~~pnGia~s~dg~~lyvad  236 (239)
                      .+++......+ -...+.|+++|++++|+++.
T Consensus       214 ~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s  245 (340)
T d1tbga_         214 REGMCRQTFTGHESDINAICFFPNGNAFATGS  245 (340)
T ss_dssp             TTTEEEEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred             CCCcEEEEEeCCCCCeEEEEECCCCCEEEEEe
Confidence            87776554443 34468899999999887653

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.53  E-value=0.0034  Score=48.58  Aligned_cols=137  Identities=12%  Similarity=0.087  Sum_probs=83.8

Q ss_pred             cceEEEcCCCCEE-EEeCCCeEEEEec-CCcE-EEeeeccCcCccCeEEcCCCCEEEEeCCCCeEEE-cc-CCceEEecc
Q 026389           79 PEDVCVDRNGVLY-TATRDGWIKRLHK-NGTW-ENWKLIGGDTLLGITTTQENEILVCDADKGLLKV-TE-EGVTVLASH  153 (239)
Q Consensus        79 Pe~ia~d~~G~ly-~~~~~g~I~~~~~-~G~~-~~~~~~~~~p~~Gl~~d~~G~L~v~d~~~g~~~v-~~-~g~~~l~~~  153 (239)
                      =.+|+|+++|.+. +++.||.|..|+. +++. ..+........ .+++++++.+++.....+.+.. +. .......  
T Consensus        20 I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--   96 (317)
T d1vyhc1          20 VTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQ-DISFDHSGKLLASCSADMTIKLWDFQGFECIRT--   96 (317)
T ss_dssp             EEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEE-EEEECTTSSEEEEEETTSCCCEEETTSSCEEEC--
T ss_pred             eEEEEEcCCCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCcEE-EEeeecccccccccccccccccccccccccccc--
Confidence            4578999988755 6679999999985 4543 33333334455 7889999987766544444333 32 2211111  


Q ss_pred             cCCccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEe-cCCCCCcceEEEcCCCCEE
Q 026389          154 VNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSIL-LDSLFFANGVALSKDEDYL  232 (239)
Q Consensus       154 ~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~-~~~l~~pnGia~s~dg~~l  232 (239)
                      ..+ .......+.+.+++...++-..                 .+.+..+|..+++.... ...-.....+++++|+++|
T Consensus        97 ~~~-~~~~~~~~~~~~~~~~~~~~~~-----------------d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  158 (317)
T d1vyhc1          97 MHG-HDHNVSSVSIMPNGDHIVSASR-----------------DKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLI  158 (317)
T ss_dssp             CCC-CSSCEEEEEECSSSSEEEEEET-----------------TSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEE
T ss_pred             ccc-ccccceeeeccCCCceEEeecc-----------------CcceeEeecccceeeeEEccCCCcceeeecccCCCEE
Confidence            111 1123567888888876665433                 46788888776654433 3334556788899999877


Q ss_pred             EEEe
Q 026389          233 VVCE  236 (239)
Q Consensus       233 yvad  236 (239)
                      +.+.
T Consensus       159 ~~~~  162 (317)
T d1vyhc1         159 ASCS  162 (317)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            6543

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=97.51  E-value=0.0011  Score=57.24  Aligned_cols=116  Identities=9%  Similarity=-0.024  Sum_probs=69.8

Q ss_pred             cCccCeEEc--CCC-CEEEEeCCCCeEE-Ec-cCC-ceEEecccCCccccccccEEEcCCC-CEEEEeCCCCcCcc--cc
Q 026389          117 DTLLGITTT--QEN-EILVCDADKGLLK-VT-EEG-VTVLASHVNGSRINLADDLIAATDG-SIYFSVASTKFGLH--NW  187 (239)
Q Consensus       117 ~p~~Gl~~d--~~G-~L~v~d~~~g~~~-v~-~~g-~~~l~~~~~g~~~~~pn~l~vd~dG-~iy~td~~~~~~~~--~~  187 (239)
                      +|. ....+  +|| .|||+|.....+. ++ .++ ...+.....+   ..|.++++.++| ++|++.... +...  ..
T Consensus        71 hP~-~s~t~gtpDGr~lfV~d~~~~rVavIDl~t~k~~~ii~iP~g---~gphgi~~spdg~t~YV~~~~~-~~v~~~~d  145 (441)
T d1qnia2          71 HPH-ISMTDGRYDGKYLFINDKANTRVARIRLDIMKTDKITHIPNV---QAIHGLRLQKVPKTNYVFCNAE-FVIPQPND  145 (441)
T ss_dssp             CCE-EEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECTTC---CCEEEEEECCSSBCCEEEEEEC-SCEESSCS
T ss_pred             CCC-cceecccCCCCEEEEEcCCCCEEEEEECCCCcEeeEEecCCC---CCccceEEeccCCEEEEEeccC-CcccccCc
Confidence            354 43443  678 5999998776665 45 455 3333222122   458999999999 678876442 2110  00


Q ss_pred             cccceeecCCceEEEEeCCCCeEEEecCCCCCcceEEEcCCCCEEEEEeC
Q 026389          188 GLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCET  237 (239)
Q Consensus       188 ~~~~~e~~~~g~v~~~d~~~~~~~~~~~~l~~pnGia~s~dg~~lyvadt  237 (239)
                      ...+.+......+..+|+.+.++...+..-..|.+++++|||+++|++.-
T Consensus       146 g~~~~~~~~~~~~~~iD~~t~~v~~qI~v~~~p~~v~~spdGk~a~vt~~  195 (441)
T d1qnia2         146 GTDFSLDNSYTMFTAIDAETMDVAWQVIVDGNLDNTDADYTGKYATSTCY  195 (441)
T ss_dssp             SSCCCGGGEEEEEEEEETTTCSEEEEEEESSCCCCEEECSSSSEEEEEES
T ss_pred             ccccccccccceEEeecCccceeeEEEecCCCccceEECCCCCEEEEEec
Confidence            00111112224556789988776544333457999999999999999864

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.43  E-value=0.0072  Score=48.99  Aligned_cols=133  Identities=16%  Similarity=0.112  Sum_probs=76.6

Q ss_pred             cceEEEcCCCCEEEEeCCCeEEEEec-CCcEE-Eeee------------------ccCcCccCeEEcCCCCEEEEeCCCC
Q 026389           79 PEDVCVDRNGVLYTATRDGWIKRLHK-NGTWE-NWKL------------------IGGDTLLGITTTQENEILVCDADKG  138 (239)
Q Consensus        79 Pe~ia~d~~G~ly~~~~~g~I~~~~~-~G~~~-~~~~------------------~~~~p~~Gl~~d~~G~L~v~d~~~g  138 (239)
                      =.+++|+++|+++++..++.|..|+. +|+.. .+..                  ....-. .+++.++|+++++-...|
T Consensus        65 V~~l~fs~dg~~lasg~d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~-~l~~s~~~~~l~s~~~dg  143 (388)
T d1erja_          65 VCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIR-SVCFSPDGKFLATGAEDR  143 (388)
T ss_dssp             CCEEEECTTSSEEEEECBSCEEEEETTTCCEEEEECC-----------------CCCCBEE-EEEECTTSSEEEEEETTS
T ss_pred             EEEEEECCCCCEEEEEeCCeEEEEEecccceEeeecccccccccccccccccccCCCCCEE-EEEECCCCCcceeccccc
Confidence            35789999998775556889988885 44321 1110                  011234 688999998777766677


Q ss_pred             eEEEc--cCC--ceEEecccCCccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEec
Q 026389          139 LLKVT--EEG--VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILL  214 (239)
Q Consensus       139 ~~~v~--~~g--~~~l~~~~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~  214 (239)
                      .+++.  ..+  ...+.    +. -.....+++.+++...++...                 .|.+..+|..+.......
T Consensus       144 ~v~i~~~~~~~~~~~~~----~h-~~~v~~~~~~~~~~~~~~~~~-----------------~~~i~~~d~~~~~~~~~~  201 (388)
T d1erja_         144 LIRIWDIENRKIVMILQ----GH-EQDIYSLDYFPSGDKLVSGSG-----------------DRTVRIWDLRTGQCSLTL  201 (388)
T ss_dssp             CEEEEETTTTEEEEEEC----CC-SSCEEEEEECTTSSEEEEEET-----------------TSEEEEEETTTTEEEEEE
T ss_pred             ccccccccccccccccc----cc-ccccccccccccccccccccc-----------------ceeeeeeecccccccccc
Confidence            77775  344  22221    10 123567788888865544332                 367778887766554444


Q ss_pred             CCCCCcceEEEcC-CCCEEEE
Q 026389          215 DSLFFANGVALSK-DEDYLVV  234 (239)
Q Consensus       215 ~~l~~pnGia~s~-dg~~lyv  234 (239)
                      ........+++.+ |+++|++
T Consensus       202 ~~~~~~~~~~~~~~~~~~l~~  222 (388)
T d1erja_         202 SIEDGVTTVAVSPGDGKYIAA  222 (388)
T ss_dssp             ECSSCEEEEEECSTTCCEEEE
T ss_pred             ccccccccccccCCCCCeEEE
Confidence            3333344444433 5554443

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.33  E-value=0.0045  Score=47.89  Aligned_cols=137  Identities=15%  Similarity=0.161  Sum_probs=77.3

Q ss_pred             CCcceEEEcCCCCEE-EEeCCCeEEEEecC-CcEE-EeeeccCcCccC--------------------eEEcCCCCEEEE
Q 026389           77 NGPEDVCVDRNGVLY-TATRDGWIKRLHKN-GTWE-NWKLIGGDTLLG--------------------ITTTQENEILVC  133 (239)
Q Consensus        77 ~gPe~ia~d~~G~ly-~~~~~g~I~~~~~~-G~~~-~~~~~~~~p~~G--------------------l~~d~~G~L~v~  133 (239)
                      .....+++++++.++ +++.++.|..++.. ++.. .+........ .                    .....++.++++
T Consensus       144 ~~~~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (317)
T d1vyhc1         144 EWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVE-CISWAPESSYSSISEATGSETKKSGKPGPFLLS  222 (317)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEE-EEEECCSCGGGGGGGCCSCC-------CCEEEE
T ss_pred             CcceeeecccCCCEEEEEeCCCeEEEEeeccceeeEEEecCCCCce-EEEEeeccccceeeccccceeeeeccCCceeEe
Confidence            345668888888766 55688998888753 3221 1111011111 1                    112234444554


Q ss_pred             eCCCCeEEEc--cCC--ceEEecccCCccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCe
Q 026389          134 DADKGLLKVT--EEG--VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNE  209 (239)
Q Consensus       134 d~~~g~~~v~--~~g--~~~l~~~~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~  209 (239)
                      ....+.+++.  .++  ...+...     -.....+++.++|++.++-+.                 .|.|..||..+++
T Consensus       223 ~~~d~~i~~~~~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~l~s~~~-----------------dg~i~iwd~~~~~  280 (317)
T d1vyhc1         223 GSRDKTIKMWDVSTGMCLMTLVGH-----DNWVRGVLFHSGGKFILSCAD-----------------DKTLRVWDYKNKR  280 (317)
T ss_dssp             EETTSEEEEEETTTTEEEEEEECC-----SSCEEEEEECSSSSCEEEEET-----------------TTEEEEECCTTSC
T ss_pred             ccCCCEEEEEECCCCcEEEEEeCC-----CCCEEEEEECCCCCEEEEEEC-----------------CCeEEEEECCCCc
Confidence            4445666554  344  2222211     124578999999976666443                 5889999987766


Q ss_pred             EE-EecCCCCCcceEEEcCCCCEEEEEe
Q 026389          210 TS-ILLDSLFFANGVALSKDEDYLVVCE  236 (239)
Q Consensus       210 ~~-~~~~~l~~pnGia~s~dg~~lyvad  236 (239)
                      .. .+...-...+.++|++|+++|+.+.
T Consensus       281 ~~~~~~~h~~~V~~~~~s~~~~~l~s~s  308 (317)
T d1vyhc1         281 CMKTLNAHEHFVTSLDFHKTAPYVVTGS  308 (317)
T ss_dssp             CCEEEECCSSCEEEEEECSSSSCEEEEE
T ss_pred             EEEEEcCCCCCEEEEEEcCCCCEEEEEe
Confidence            43 3333334568899999999877653

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.30  E-value=0.0021  Score=52.83  Aligned_cols=121  Identities=7%  Similarity=-0.156  Sum_probs=71.4

Q ss_pred             CCeEEEEecC-CcEEEeeeccCcCccCeEEcCCCC-EEEEeCC---------CCeEE-Ec-cCC--ceEEecc--cCCcc
Q 026389           96 DGWIKRLHKN-GTWENWKLIGGDTLLGITTTQENE-ILVCDAD---------KGLLK-VT-EEG--VTVLASH--VNGSR  158 (239)
Q Consensus        96 ~g~I~~~~~~-G~~~~~~~~~~~p~~Gl~~d~~G~-L~v~d~~---------~g~~~-v~-~~g--~~~l~~~--~~g~~  158 (239)
                      +.+|+.+|.+ ++....... +... ++++.+||+ ||++...         .+.++ +| ..+  ...+...  .....
T Consensus        45 ~~~~~~~d~~~~~~~~~~~~-~~~~-~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~  122 (368)
T d1mdah_          45 TTENWVSCAGCGVTLGHSLG-AFLS-LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSV  122 (368)
T ss_dssp             SEEEEEEETTTTEEEEEEEE-CTTC-EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCB
T ss_pred             cceEEEEeCCCCcEEEEEeC-CCCC-cceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCccceecc
Confidence            3467777764 343322232 3344 789999995 8887642         12244 44 344  2222111  01112


Q ss_pred             ccccccEEEcCCC-CEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecCCC----C----CcceEEEcCCC
Q 026389          159 INLADDLIAATDG-SIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSL----F----FANGVALSKDE  229 (239)
Q Consensus       159 ~~~pn~l~vd~dG-~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~~l----~----~pnGia~s~dg  229 (239)
                      ...|.++++.+|| .+||++..                 .+.+..+|..+++.......-    .    ....+++++||
T Consensus       123 g~~p~~~a~SpDGk~l~va~~~-----------------~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~Dg  185 (368)
T d1mdah_         123 GPRVHIIGNCASSACLLFFLFG-----------------SSAAAGLSVPGASDDQLTKSASCFHIHPGAAATHYLGSCPA  185 (368)
T ss_dssp             SCCTTSEEECTTSSCEEEEECS-----------------SSCEEEEEETTTEEEEEEECSSCCCCEEEETTEEECCCCTT
T ss_pred             cCCccceEECCCCCEEEEEeCC-----------------CCeEEEEECCCCcEeEEeeccCcceEccCCCceEEEEcCCC
Confidence            3458899999999 69998754                 478888998888765544221    1    22347778888


Q ss_pred             CEEEEE
Q 026389          230 DYLVVC  235 (239)
Q Consensus       230 ~~lyva  235 (239)
                      +.+++.
T Consensus       186 ~~~~~~  191 (368)
T d1mdah_         186 SLAASD  191 (368)
T ss_dssp             SCEEEE
T ss_pred             CEEEEE
Confidence            877665

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.05  E-value=0.024  Score=45.64  Aligned_cols=135  Identities=14%  Similarity=0.128  Sum_probs=76.5

Q ss_pred             ceEEEcCCCCEE-EEeCCCeEEEEecC-CcEEEeee-ccCcCccCeEEcCCCCEEEEeCCCCeEEEc-c-CCceEEeccc
Q 026389           80 EDVCVDRNGVLY-TATRDGWIKRLHKN-GTWENWKL-IGGDTLLGITTTQENEILVCDADKGLLKVT-E-EGVTVLASHV  154 (239)
Q Consensus        80 e~ia~d~~G~ly-~~~~~g~I~~~~~~-G~~~~~~~-~~~~p~~Gl~~d~~G~L~v~d~~~g~~~v~-~-~g~~~l~~~~  154 (239)
                      .+++|.++|.+. +++.+|.|..++.. ++...... ...... .+.+.+++..++.-...+.+++. . ..........
T Consensus       125 ~~l~~s~~~~~l~s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~-~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~  203 (388)
T d1erja_         125 RSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIY-SLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSI  203 (388)
T ss_dssp             EEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEE-EEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEEC
T ss_pred             EEEEECCCCCcceeccccccccccccccccccccccccccccc-ccccccccccccccccceeeeeeecccccccccccc
Confidence            468999988755 67799999999864 33322222 223344 77788888655554456666664 3 3322111111


Q ss_pred             CCccccccccEEEcC-CCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecC-C-------CCCcceEEE
Q 026389          155 NGSRINLADDLIAAT-DGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLD-S-------LFFANGVAL  225 (239)
Q Consensus       155 ~g~~~~~pn~l~vd~-dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~-~-------l~~pnGia~  225 (239)
                      ..    ....+.+.+ +|+++++...                 .|.+..||..+++...... .       -...+.+++
T Consensus       204 ~~----~~~~~~~~~~~~~~l~~~~~-----------------d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~  262 (388)
T d1erja_         204 ED----GVTTVAVSPGDGKYIAAGSL-----------------DRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVF  262 (388)
T ss_dssp             SS----CEEEEEECSTTCCEEEEEET-----------------TSCEEEEETTTCCEEEEEC------CCCSSCEEEEEE
T ss_pred             cc----ccccccccCCCCCeEEEEcC-----------------CCeEEEeecccCccceeeccccccccCCCCCEEEEEE
Confidence            11    123344444 5666665433                 4678888877655432221 1       123467899


Q ss_pred             cCCCCEEEEEe
Q 026389          226 SKDEDYLVVCE  236 (239)
Q Consensus       226 s~dg~~lyvad  236 (239)
                      ++++++|+++.
T Consensus       263 s~~~~~l~s~~  273 (388)
T d1erja_         263 TRDGQSVVSGS  273 (388)
T ss_dssp             CTTSSEEEEEE
T ss_pred             CCCCCEEEEEE
Confidence            99999887653

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.00  E-value=0.011  Score=47.17  Aligned_cols=119  Identities=13%  Similarity=0.106  Sum_probs=68.1

Q ss_pred             CCCEEEEeCCCeEEEEecCC-cEEEeee-------------ccCcCccCeEEcCCCC-EEEEeCCC---------CeEE-
Q 026389           87 NGVLYTATRDGWIKRLHKNG-TWENWKL-------------IGGDTLLGITTTQENE-ILVCDADK---------GLLK-  141 (239)
Q Consensus        87 ~G~ly~~~~~g~I~~~~~~G-~~~~~~~-------------~~~~p~~Gl~~d~~G~-L~v~d~~~---------g~~~-  141 (239)
                      ++.+++...+++++.++.++ +...+..             ...... .+++.++|. +|++....         +.+. 
T Consensus       206 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v  284 (355)
T d2bbkh_         206 AGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQ-QVAYHRALDRIYLLVDQRDEWRHKTASRFVVV  284 (355)
T ss_dssp             TTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSS-CEEEETTTTEEEEEEEECCTTCTTSCEEEEEE
T ss_pred             CCeEEEecCCCeEEEEecCCCcEEEEeccCCcccceEeeeeeccceE-EEEEeCCCCeEEEEeccCCceeecCCCCeEEE
Confidence            34445556677777777533 2221110             012234 578888884 56654322         1233 


Q ss_pred             Ec-cCC--ceEEecccCCccccccccEEEcCCCC--EEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecCC
Q 026389          142 VT-EEG--VTVLASHVNGSRINLADDLIAATDGS--IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDS  216 (239)
Q Consensus       142 v~-~~g--~~~l~~~~~g~~~~~pn~l~vd~dG~--iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~~  216 (239)
                      ++ .++  +..+..   +   ..+.+++++|||+  +|++...                 .+.|+.||..+++...-+.+
T Consensus       285 ~d~~t~~~~~~~~~---~---~~~~~~a~spDG~~~l~v~~~~-----------------d~~i~v~D~~tg~~~~~i~~  341 (355)
T d2bbkh_         285 LDAKTGERLAKFEM---G---HEIDSINVSQDEKPLLYALSTG-----------------DKTLYIHDAESGEELRSVNQ  341 (355)
T ss_dssp             EETTTCCEEEEEEE---E---EEECEEEECCSSSCEEEEEETT-----------------TTEEEEEETTTCCEEEEECC
T ss_pred             EeCCCCcEEEEecC---C---CCEEEEEEcCCCCeEEEEEECC-----------------CCEEEEEECCCCCEEEEEeC
Confidence            34 334  222211   1   3578999999996  5666543                 58999999988886555544


Q ss_pred             -CCCcceEEEcCCC
Q 026389          217 -LFFANGVALSKDE  229 (239)
Q Consensus       217 -l~~pnGia~s~dg  229 (239)
                       -..|.-|.+..+|
T Consensus       342 ~G~~p~~i~~~d~~  355 (355)
T d2bbkh_         342 LGHGPQVITTADMG  355 (355)
T ss_dssp             CCSSCCEEECCCCC
T ss_pred             cCCCccEEEeCCCC
Confidence             4667777776654

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.81  E-value=0.025  Score=43.98  Aligned_cols=129  Identities=14%  Similarity=0.115  Sum_probs=67.7

Q ss_pred             EEEcCCCC-EEEEeCCCeEEEEecC-CcE-EEeeeccCcCccCeEEcCCCCEEEEeCCCCeEEEc--cCC--ceEEeccc
Q 026389           82 VCVDRNGV-LYTATRDGWIKRLHKN-GTW-ENWKLIGGDTLLGITTTQENEILVCDADKGLLKVT--EEG--VTVLASHV  154 (239)
Q Consensus        82 ia~d~~G~-ly~~~~~g~I~~~~~~-G~~-~~~~~~~~~p~~Gl~~d~~G~L~v~d~~~g~~~v~--~~g--~~~l~~~~  154 (239)
                      ..+..++. +++++.+|.|..|+.. ++. ..+........ .+.+  +++++++-...+.+++.  ...  ...+....
T Consensus       181 ~~~~~~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~v~-~~~~--~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~  257 (342)
T d2ovrb2         181 YSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTS-GMEL--KDNILVSGNADSTVKIWDIKTGQCLQTLQGPN  257 (342)
T ss_dssp             EEEEECSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEE-EEEE--ETTEEEEEETTSCEEEEETTTCCEEEEECSTT
T ss_pred             ccccCCCCEEEEEeCCCeEEEeecccceeeeEeccccccee-EEec--CCCEEEEEcCCCEEEEEecccccccccccccc
Confidence            34444554 5567789999999864 332 22222222223 4444  45566655556666664  233  22232111


Q ss_pred             CCccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEE-EecCC-----CCCcceEEEcCC
Q 026389          155 NGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETS-ILLDS-----LFFANGVALSKD  228 (239)
Q Consensus       155 ~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~-~~~~~-----l~~pnGia~s~d  228 (239)
                      ..    ...-..+..+++++++-+.                 .|.|..||..+++.. .+...     -...+.++++||
T Consensus       258 ~~----~~~~~~~~~~~~~~~s~s~-----------------Dg~i~iwd~~tg~~i~~~~~~~~~~~~~~v~~v~~s~~  316 (342)
T d2ovrb2         258 KH----QSAVTCLQFNKNFVITSSD-----------------DGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNT  316 (342)
T ss_dssp             SC----SSCEEEEEECSSEEEEEET-----------------TSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSS
T ss_pred             ee----eeceeecccCCCeeEEEcC-----------------CCEEEEEECCCCCEEEEEecccCCCCCCCEEEEEECCC
Confidence            11    1122334445666665543                 589999998877653 33211     112467899998


Q ss_pred             CCEEEE
Q 026389          229 EDYLVV  234 (239)
Q Consensus       229 g~~lyv  234 (239)
                      +..|.+
T Consensus       317 ~~~la~  322 (342)
T d2ovrb2         317 KLVCAV  322 (342)
T ss_dssp             EEEEEE
T ss_pred             CCEEEE
Confidence            875544

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.63  E-value=0.039  Score=44.05  Aligned_cols=137  Identities=14%  Similarity=0.085  Sum_probs=77.0

Q ss_pred             ceEEEcCCCCEEEE-e--CCCeEEEEecC-Cc-EEEeeeccCcCccCeEEcCCCC-EEEEeCCCCeEEEc--cCC-ceEE
Q 026389           80 EDVCVDRNGVLYTA-T--RDGWIKRLHKN-GT-WENWKLIGGDTLLGITTTQENE-ILVCDADKGLLKVT--EEG-VTVL  150 (239)
Q Consensus        80 e~ia~d~~G~ly~~-~--~~g~I~~~~~~-G~-~~~~~~~~~~p~~Gl~~d~~G~-L~v~d~~~g~~~v~--~~g-~~~l  150 (239)
                      .+++|+++|..++. .  .++.+..++.+ |+ ...+......-. .+++.+++. ++++-...+.+++.  +.+ ...-
T Consensus       119 ~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~-~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~  197 (325)
T d1pgua1         119 SDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRIN-ACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSAS  197 (325)
T ss_dssp             EEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSCSSCEE-EEEECSSSSCEEEEEETTTEEEEEETTTBEEEEE
T ss_pred             EEEEECCCCCccceeeccccceEEEEeecccccceeeeecccccc-cccccccccceEEEeeccccccccccccccccee
Confidence            46889898876633 2  35556666543 43 233222233345 788988874 45544456666665  233 1111


Q ss_pred             ecccCCccccccccEEEcCC-CCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecCC-CCCcceEEEc--
Q 026389          151 ASHVNGSRINLADDLIAATD-GSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDS-LFFANGVALS--  226 (239)
Q Consensus       151 ~~~~~g~~~~~pn~l~vd~d-G~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~~-l~~pnGia~s--  226 (239)
                      .....+ .-.....+++.|| |.++++-..                 .|.|..||..+++....+.+ -....++.++  
T Consensus       198 ~~~~~~-~~~~v~~v~~~pd~~~~l~s~~~-----------------d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~~  259 (325)
T d1pgua1         198 DRTHHK-QGSFVRDVEFSPDSGEFVITVGS-----------------DRKISCFDGKSGEFLKYIEDDQEPVQGGIFALS  259 (325)
T ss_dssp             ECSSSC-TTCCEEEEEECSTTCCEEEEEET-----------------TCCEEEEETTTCCEEEECCBTTBCCCSCEEEEE
T ss_pred             cccccC-CCCccEEeeeccccceecccccc-----------------ccceeeeeeccccccccccccccccccceeeee
Confidence            111111 1234678999997 577776543                 57899999887776544432 2223445554  


Q ss_pred             -CCCCEEEEE
Q 026389          227 -KDEDYLVVC  235 (239)
Q Consensus       227 -~dg~~lyva  235 (239)
                       +||++|+.+
T Consensus       260 ~~dg~~l~s~  269 (325)
T d1pgua1         260 WLDSQKFATV  269 (325)
T ss_dssp             ESSSSEEEEE
T ss_pred             ccCCCEEEEE
Confidence             677766554

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.56  E-value=0.03  Score=47.16  Aligned_cols=130  Identities=6%  Similarity=-0.028  Sum_probs=73.9

Q ss_pred             ceEEEcCCCCEEEEeCCCeEEEEec-CCcEEEeeec------cCcCccCeEEcCCCC--EEEEeCC-------CCeEEE-
Q 026389           80 EDVCVDRNGVLYTATRDGWIKRLHK-NGTWENWKLI------GGDTLLGITTTQENE--ILVCDAD-------KGLLKV-  142 (239)
Q Consensus        80 e~ia~d~~G~ly~~~~~g~I~~~~~-~G~~~~~~~~------~~~p~~Gl~~d~~G~--L~v~d~~-------~g~~~v-  142 (239)
                      -.+.|.+++.++. ..++.|+.++. +|+.+.+...      ..... ...+.+||+  ++..+..       .+.+.+ 
T Consensus        20 ~~~~W~~d~~~~~-~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~-~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~   97 (470)
T d2bgra1          20 YSLRWISDHEYLY-KQENNILVFNAEYGNSSVFLENSTFDEFGHSIN-DYSISPDGQFILLEYNYVKQWRHSYTASYDIY   97 (470)
T ss_dssp             CCCEECSSSEEEE-ESSSCEEEEETTTCCEEEEECTTTTTTSSSCCC-EEEECTTSSEEEEEEEEEECSSSCEEEEEEEE
T ss_pred             cCCEeCCCCEEEE-EcCCcEEEEECCCCCEEEEEchhhhhhccCccc-eeEECCCCCEEEEEECCcceeeeccCceEEEE
Confidence            3457777776544 34778999996 4544433321      12345 788999997  3333311       233333 


Q ss_pred             c-cCC-ceEEecccCCccccccccEEEcCCC-CEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecCC---
Q 026389          143 T-EEG-VTVLASHVNGSRINLADDLIAATDG-SIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDS---  216 (239)
Q Consensus       143 ~-~~g-~~~l~~~~~g~~~~~pn~l~vd~dG-~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~~---  216 (239)
                      + .+| ...+....     .....+.+.||| .|.|..                   ++.++.++..+++...+...   
T Consensus        98 d~~~~~~~~l~~~~-----~~~~~~~~SPDG~~ia~~~-------------------~~~l~~~~~~~g~~~~~t~~~~~  153 (470)
T d2bgra1          98 DLNKRQLITEERIP-----NNTQWVTWSPVGHKLAYVW-------------------NNDIYVKIEPNLPSYRITWTGKE  153 (470)
T ss_dssp             ETTTTEECCSSCCC-----TTEEEEEECSSTTCEEEEE-------------------TTEEEEESSTTSCCEECCSCCBT
T ss_pred             ECCCCcccccccCC-----ccccccccccCcceeeEee-------------------cccceEEECCCCceeeeeeccCC
Confidence            4 344 33222211     124567889999 455543                   24577777666654443321   


Q ss_pred             ----------------CCCcceEEEcCCCCEEEEE
Q 026389          217 ----------------LFFANGVALSKDEDYLVVC  235 (239)
Q Consensus       217 ----------------l~~pnGia~s~dg~~lyva  235 (239)
                                      .....++.+||||++|.+.
T Consensus       154 ~~~~~g~~d~~~~~~~~~~~~~~~wSPDGk~ia~~  188 (470)
T d2bgra1         154 DIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYA  188 (470)
T ss_dssp             TTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEE
T ss_pred             CcccccccceeeeeeecCCccccEECCCCCcccee
Confidence                            2335778999999988765

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.30  E-value=0.061  Score=41.42  Aligned_cols=58  Identities=7%  Similarity=0.105  Sum_probs=42.9

Q ss_pred             ccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecCCCCCcceEEEcCCCCEEEEE
Q 026389          161 LADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVC  235 (239)
Q Consensus       161 ~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~~l~~pnGia~s~dg~~lyva  235 (239)
                      ..+.++++|+|.+++|-+.                 .|.|..||.++++............-++|+++|+.|.++
T Consensus       253 ~v~~l~~sp~~~~lasg~~-----------------Dg~v~vWD~~~~~~l~~~~~~~~~~~~~~s~~~~~l~~a  310 (342)
T d1yfqa_         253 PVNSIEFSPRHKFLYTAGS-----------------DGIISCWNLQTRKKIKNFAKFNEDSVVKIACSDNILCLA  310 (342)
T ss_dssp             CEEEEEECTTTCCEEEEET-----------------TSCEEEEETTTTEEEEECCCCSSSEEEEEEECSSEEEEE
T ss_pred             cceeEEecCCccEEEEECC-----------------CCEEEEEECCCCcEEEEecCCCCCEEEEEEeCCCEEEEE
Confidence            3578999999987777654                 589999999887654433333444568899999988776

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=96.21  E-value=0.014  Score=49.99  Aligned_cols=158  Identities=13%  Similarity=0.122  Sum_probs=85.0

Q ss_pred             cCCcCCcceEEEcC---CC-CEEEEe-CCCeEEEEecCC-cEEEee--eccCcCccCeEEcCCC-CEEEEeCCC------
Q 026389           73 EGILNGPEDVCVDR---NG-VLYTAT-RDGWIKRLHKNG-TWENWK--LIGGDTLLGITTTQEN-EILVCDADK------  137 (239)
Q Consensus        73 ~g~~~gPe~ia~d~---~G-~ly~~~-~~g~I~~~~~~G-~~~~~~--~~~~~p~~Gl~~d~~G-~L~v~d~~~------  137 (239)
                      -|...-| .+.+..   || .+|+.+ .++||.|||.+- +.....  .....++ |++..+++ ..||.....      
T Consensus        82 ~GD~HHP-~~S~TdGtyDGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~H-G~r~~~~p~T~YV~~~~e~~vP~p  159 (459)
T d1fwxa2          82 NGDLHHV-HMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIH-GLRPQKWPRSNYVFCNGEDETPLV  159 (459)
T ss_dssp             CCCBCCE-EEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEE-EEEECCSSBCSEEEEEECSCEESS
T ss_pred             CCCcCCC-cccccCCccceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCc-eeecccCCCeEEEEccCccccccC
Confidence            3556777 444433   55 467777 889999999753 433222  3455678 98887766 467764322      


Q ss_pred             -------------CeE-EEcc-CC-ceEEecccCCccccccccEEEcCCCC-EEEEeCCCCcCc---------cccc---
Q 026389          138 -------------GLL-KVTE-EG-VTVLASHVNGSRINLADDLIAATDGS-IYFSVASTKFGL---------HNWG---  188 (239)
Q Consensus       138 -------------g~~-~v~~-~g-~~~l~~~~~g~~~~~pn~l~vd~dG~-iy~td~~~~~~~---------~~~~---  188 (239)
                                   +.+ .+|. .. +..-. .+.+    .+.++++++||. +|+|...+.-+.         .++.   
T Consensus       160 ndg~~l~d~~~y~~~~t~ID~~tm~V~~QV-~V~g----~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~  234 (459)
T d1fwxa2         160 NDGTNMEDVANYVNVFTAVDADKWEVAWQV-LVSG----NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVF  234 (459)
T ss_dssp             CSSSSTTCGG-EEEEEEEEETTTTEEEEEE-EESS----CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEE
T ss_pred             CCCccccchhhcceEEEEEecCCceEEEEe-eeCC----ChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEe
Confidence                         122 2332 22 11111 1222    478999999995 566653322110         0010   


Q ss_pred             -----ccceee---cCCceEEEEeCCC---CeEEEecCCCCCcceEEEcCCCCEEEEEeC
Q 026389          189 -----LDLLEA---KPHGKLLKYDPSL---NETSILLDSLFFANGVALSKDEDYLVVCET  237 (239)
Q Consensus       189 -----~~~~e~---~~~g~v~~~d~~~---~~~~~~~~~l~~pnGia~s~dg~~lyvadt  237 (239)
                           ...+..   .--+.+-.+|...   ..+...+..-..|.|+.+||||+++||+.-
T Consensus       235 n~~rie~av~~Gk~~eingV~VVD~~~~~~~~v~~yIPVpKsPHGV~vSPDGKyi~VaGK  294 (459)
T d1fwxa2         235 NIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGK  294 (459)
T ss_dssp             EHHHHHHHHHHTCSEEETTEEEEECSGG--CSSEEEEEEESSCCCEEECTTSSEEEEECT
T ss_pred             chHHhHHhhhcCCcEEeCCceeecccccCCcceeEEEecCCCCCceEECCCCCEEEEeCC
Confidence                 000000   0012344556542   122323344467999999999999999863

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.18  E-value=0.15  Score=40.35  Aligned_cols=132  Identities=13%  Similarity=0.158  Sum_probs=73.5

Q ss_pred             cceEEEcC--CCCEE-EEeCCCeEEEEecC-C----cEE-----EeeeccCcCccCeEEcCCCCEEEE-eCC-CCeEEE-
Q 026389           79 PEDVCVDR--NGVLY-TATRDGWIKRLHKN-G----TWE-----NWKLIGGDTLLGITTTQENEILVC-DAD-KGLLKV-  142 (239)
Q Consensus        79 Pe~ia~d~--~G~ly-~~~~~g~I~~~~~~-G----~~~-----~~~~~~~~p~~Gl~~d~~G~L~v~-d~~-~g~~~v-  142 (239)
                      -..++|.|  +|.++ +++.||+|..|+.. +    ...     .+....+.-. .+++.++|+.+++ ..+ .+...+ 
T Consensus        66 v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~-~v~~s~~~~~l~~~~~~~~~~~~~~  144 (325)
T d1pgua1          66 VTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPIS-DISWDFEGRRLCVVGEGRDNFGVFI  144 (325)
T ss_dssp             EEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEE-EEEECTTSSEEEEEECCSSCSEEEE
T ss_pred             EEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCcceeeeecccccccccccCcEE-EEEECCCCCccceeeccccceEEEE
Confidence            45688876  56655 56799999888742 1    111     1111223344 7889999975443 322 333333 


Q ss_pred             c-cCC--ceEEecccCCccccccccEEEcCCCC-EEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecCC--
Q 026389          143 T-EEG--VTVLASHVNGSRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDS--  216 (239)
Q Consensus       143 ~-~~g--~~~l~~~~~g~~~~~pn~l~vd~dG~-iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~~--  216 (239)
                      + ..+  ...+.    +. -...+.+++.+++. +.++.+.                 .|.+..||....+...-...  
T Consensus       145 ~~~~~~~~~~~~----~h-~~~v~~~~~~~~~~~~~~~~~~-----------------d~~v~~~d~~~~~~~~~~~~~~  202 (325)
T d1pgua1         145 SWDSGNSLGEVS----GH-SQRINACHLKQSRPMRSMTVGD-----------------DGSVVFYQGPPFKFSASDRTHH  202 (325)
T ss_dssp             ETTTCCEEEECC----SC-SSCEEEEEECSSSSCEEEEEET-----------------TTEEEEEETTTBEEEEEECSSS
T ss_pred             eecccccceeee----ec-ccccccccccccccceEEEeec-----------------ccccccccccccccceeccccc
Confidence            3 344  33332    11 12357789999874 4554433                 47788888766554433322  


Q ss_pred             --CCCcceEEEcCCC-CEEE
Q 026389          217 --LFFANGVALSKDE-DYLV  233 (239)
Q Consensus       217 --l~~pnGia~s~dg-~~ly  233 (239)
                        -.....++|+||+ +++.
T Consensus       203 ~~~~~v~~v~~~pd~~~~l~  222 (325)
T d1pgua1         203 KQGSFVRDVEFSPDSGEFVI  222 (325)
T ss_dssp             CTTCCEEEEEECSTTCCEEE
T ss_pred             CCCCccEEeeeccccceecc
Confidence              2235778999974 4443

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=96.17  E-value=0.0032  Score=48.98  Aligned_cols=38  Identities=16%  Similarity=0.141  Sum_probs=32.5

Q ss_pred             ceEEEEeCCCCeEEEecCCCCCcceEEEcCCCCEEEEE
Q 026389          198 GKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVC  235 (239)
Q Consensus       198 g~v~~~d~~~~~~~~~~~~l~~pnGia~s~dg~~lyva  235 (239)
                      |.||.+|.++++.+.+..+-....+.+|||||++|+++
T Consensus        21 ~dl~~~d~~~g~~~~Lt~~~~~~~~p~~SPDG~~iaf~   58 (281)
T d1k32a2          21 DDLWEHDLKSGSTRKIVSNLGVINNARFFPDGRKIAIR   58 (281)
T ss_dssp             TEEEEEETTTCCEEEEECSSSEEEEEEECTTSSEEEEE
T ss_pred             CcEEEEECCCCCEEEEecCCCcccCEEECCCCCEEEEE
Confidence            67999999999998887776677889999999988654

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=96.08  E-value=0.12  Score=42.63  Aligned_cols=102  Identities=15%  Similarity=0.290  Sum_probs=60.6

Q ss_pred             CCcceEEE--cC-CCCEE--EEeCCCeEEEEe--c--CCcEE----EeeeccCcCccCeEEcCC-CCEEEEeCCCCeEEE
Q 026389           77 NGPEDVCV--DR-NGVLY--TATRDGWIKRLH--K--NGTWE----NWKLIGGDTLLGITTTQE-NEILVCDADKGLLKV  142 (239)
Q Consensus        77 ~gPe~ia~--d~-~G~ly--~~~~~g~I~~~~--~--~G~~~----~~~~~~~~p~~Gl~~d~~-G~L~v~d~~~g~~~v  142 (239)
                      ..+-|++.  ++ +|.+|  +....|++..|.  .  +|++.    .-......+- |+++|.+ ++|||++...|++++
T Consensus       128 ~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~~~~q~E-GCVvDde~~~LyisEE~~Giw~~  206 (353)
T d1h6la_         128 DEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFKMNSQTE-GMAADDEYGSLYIAEEDEAIWKF  206 (353)
T ss_dssp             SSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEECSSCEE-EEEEETTTTEEEEEETTTEEEEE
T ss_pred             CcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccCCCCccc-eEEEeCCCCcEEEecCccceEEE
Confidence            34668888  54 57777  444788876553  2  34331    1123345677 9999955 689999999999988


Q ss_pred             c--cC-C-ceEEecccCCccc-cccccEEEc----CCCCEEEEeCC
Q 026389          143 T--EE-G-VTVLASHVNGSRI-NLADDLIAA----TDGSIYFSVAS  179 (239)
Q Consensus       143 ~--~~-g-~~~l~~~~~g~~~-~~pn~l~vd----~dG~iy~td~~  179 (239)
                      .  ++ + ...+.....+..+ .-+.||++=    .+|.|++|+..
T Consensus       207 ~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG  252 (353)
T d1h6la_         207 SAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQG  252 (353)
T ss_dssp             ESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGG
T ss_pred             EeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCC
Confidence            7  33 3 3333333333222 235677653    23566666644

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.02  E-value=0.1  Score=40.10  Aligned_cols=127  Identities=13%  Similarity=0.111  Sum_probs=70.0

Q ss_pred             ceEEEcCCCCEEEEeCCCeEEEEecCCcEEEeeeccCcCccCeEEcCCCCEEEEeCCCCeEEEc-cCC--ceEEecccCC
Q 026389           80 EDVCVDRNGVLYTATRDGWIKRLHKNGTWENWKLIGGDTLLGITTTQENEILVCDADKGLLKVT-EEG--VTVLASHVNG  156 (239)
Q Consensus        80 e~ia~d~~G~ly~~~~~g~I~~~~~~G~~~~~~~~~~~p~~Gl~~d~~G~L~v~d~~~g~~~v~-~~g--~~~l~~~~~g  156 (239)
                      .++++.+++.+++++.|++|..++...     ......|. .+.+.+++.+++.....+++..+ .++  ...+..  . 
T Consensus        50 ~~~~~~~~~~~~s~s~D~~v~~w~~~~-----~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-  120 (287)
T d1pgua2          50 VSLDNSKAQEYSSISWDDTLKVNGITK-----HEFGSQPK-VASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRL--N-  120 (287)
T ss_dssp             EEEECCSTTCCEEEETTTEEEETTEEE-----EECSSCEE-EEEECSSSEEEEEETTSEEEEEETTTCCEEEEEEC--S-
T ss_pred             EEEEecCCCeEEEEeeccccccccccc-----ccccccee-eeeeccCCceEEEeecccceeeeccceeeeeeccc--c-
Confidence            345666566666666677665554210     12234566 77777777777776666666665 344  222211  1 


Q ss_pred             ccccccccEEEcCCCC-EEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecC-CC-CCcceEEEcCCCCEEE
Q 026389          157 SRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLD-SL-FFANGVALSKDEDYLV  233 (239)
Q Consensus       157 ~~~~~pn~l~vd~dG~-iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~-~l-~~pnGia~s~dg~~ly  233 (239)
                           ....++.+++. +.++...                 .+.+..|+....+...... .. .....|+|+|||++|+
T Consensus       121 -----~~~~~~~~~~~~~~v~~~~-----------------~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~  178 (287)
T d1pgua2         121 -----SPGSAVSLSQNYVAVGLEE-----------------GNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIA  178 (287)
T ss_dssp             -----SCEEEEEECSSEEEEEETT-----------------TSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEE
T ss_pred             -----ceeeeeeccCcceeeeccc-----------------cceeeeeeccccceeeeeeeccCCceeEEEeccCccccc
Confidence                 12345666664 4444332                 2356667764333332222 22 3457899999999888


Q ss_pred             EEeC
Q 026389          234 VCET  237 (239)
Q Consensus       234 vadt  237 (239)
                      ++..
T Consensus       179 ~g~~  182 (287)
T d1pgua2         179 AGDV  182 (287)
T ss_dssp             EEET
T ss_pred             cccc
Confidence            7754

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=95.97  E-value=0.019  Score=44.22  Aligned_cols=64  Identities=14%  Similarity=0.166  Sum_probs=42.5

Q ss_pred             cccEEEcCCC-CEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecCC-------CCCcceEEEcCCCCEEE
Q 026389          162 ADDLIAATDG-SIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDS-------LFFANGVALSKDEDYLV  233 (239)
Q Consensus       162 pn~l~vd~dG-~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~~-------l~~pnGia~s~dg~~ly  233 (239)
                      ..+.++.||| .|+|+......            .....|++++.++++.+.+...       .......+++|||+.|+
T Consensus        43 ~~~p~~SPDG~~iaf~~~~~~~------------~~~~~i~~~~~~~g~~~~lt~~~~~~~~~~~~~~~~~~spdg~~l~  110 (281)
T d1k32a2          43 INNARFFPDGRKIAIRVMRGSS------------LNTADLYFYNGENGEIKRITYFSGKSTGRRMFTDVAGFDPDGNLII  110 (281)
T ss_dssp             EEEEEECTTSSEEEEEEEESTT------------CCEEEEEEEETTTTEEEECCCCCEEEETTEECSEEEEECTTCCEEE
T ss_pred             ccCEEECCCCCEEEEEEeeCCC------------CCceEEEEEEecCCceEEeeecCCCccCccccccccccCCCCCEEE
Confidence            3567899999 57665421100            0125699999998888776432       13456788999999998


Q ss_pred             EEeC
Q 026389          234 VCET  237 (239)
Q Consensus       234 vadt  237 (239)
                      ++..
T Consensus       111 ~~~~  114 (281)
T d1k32a2         111 STDA  114 (281)
T ss_dssp             EECT
T ss_pred             EEEc
Confidence            7643

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=95.95  E-value=0.016  Score=48.90  Aligned_cols=104  Identities=14%  Similarity=0.074  Sum_probs=63.1

Q ss_pred             CeEEcCCCCEEEEeCCCCeEEEc-cCC-ceEEecc--cCCccccccccEEEcCCCC-EEEEeCCCCcCcccccccceeec
Q 026389          121 GITTTQENEILVCDADKGLLKVT-EEG-VTVLASH--VNGSRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAK  195 (239)
Q Consensus       121 Gl~~d~~G~L~v~d~~~g~~~v~-~~g-~~~l~~~--~~g~~~~~pn~l~vd~dG~-iy~td~~~~~~~~~~~~~~~e~~  195 (239)
                      .+.+-+++.++..+ ..+++.++ .+| .+.+.+.  +.+. .....++.+.|||+ |.|+....         .+..+.
T Consensus        21 ~~~W~~d~~~~~~~-~~~~~~~~~~t~~~~~~~~~~~~~~~-~~~i~~~~~SpDg~~i~~~~~~~---------~~~r~s   89 (470)
T d2bgra1          21 SLRWISDHEYLYKQ-ENNILVFNAEYGNSSVFLENSTFDEF-GHSINDYSISPDGQFILLEYNYV---------KQWRHS   89 (470)
T ss_dssp             CCEECSSSEEEEES-SSCEEEEETTTCCEEEEECTTTTTTS-SSCCCEEEECTTSSEEEEEEEEE---------ECSSSC
T ss_pred             CCEeCCCCEEEEEc-CCcEEEEECCCCCEEEEEchhhhhhc-cCccceeEECCCCCEEEEEECCc---------ceeeec
Confidence            56666777655444 35677777 566 4444432  2221 12467899999995 44432110         011122


Q ss_pred             CCceEEEEeCCCCeEEEecCCCCCcceEEEcCCCCEEEEE
Q 026389          196 PHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVC  235 (239)
Q Consensus       196 ~~g~v~~~d~~~~~~~~~~~~l~~pnGia~s~dg~~lyva  235 (239)
                      ..+.++.||..++++..+...-.....+.|||||+.+.+.
T Consensus        90 ~~~~~~l~d~~~~~~~~l~~~~~~~~~~~~SPDG~~ia~~  129 (470)
T d2bgra1          90 YTASYDIYDLNKRQLITEERIPNNTQWVTWSPVGHKLAYV  129 (470)
T ss_dssp             EEEEEEEEETTTTEECCSSCCCTTEEEEEECSSTTCEEEE
T ss_pred             cCceEEEEECCCCcccccccCCccccccccccCcceeeEe
Confidence            3578999999999876655444445678899999977543

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.87  E-value=0.057  Score=44.15  Aligned_cols=101  Identities=11%  Similarity=0.165  Sum_probs=58.3

Q ss_pred             CccCeEEcCCCCEEEEeCCCCeEEEc--cCC--ceEEec--ccCCccccccccEEEcCCCCEEEEeCCCCcCcccccccc
Q 026389          118 TLLGITTTQENEILVCDADKGLLKVT--EEG--VTVLAS--HVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDL  191 (239)
Q Consensus       118 p~~Gl~~d~~G~L~v~d~~~g~~~v~--~~g--~~~l~~--~~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~  191 (239)
                      .+ .+++.++|.| ++-...+.+++.  ..+  ...+..  ...+. -...+.+++.|||++.++-+..           
T Consensus       187 ~~-~v~~s~dg~l-asgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h-~~~V~~l~~spdg~~l~sgs~D-----------  252 (393)
T d1sq9a_         187 AT-SVDISERGLI-ATGFNNGTVQISELSTLRPLYNFESQHSMINN-SNSIRSVKFSPQGSLLAIAHDS-----------  252 (393)
T ss_dssp             CC-EEEECTTSEE-EEECTTSEEEEEETTTTEEEEEEECCC---CC-CCCEEEEEECSSTTEEEEEEEE-----------
T ss_pred             EE-EEEECCCCEE-EEEeCCCcEEEEeecccccccccccccccccc-cceEEEcccccccceeeeecCC-----------
Confidence            45 6888888844 444456777775  344  222211  11111 1346789999999887775420           


Q ss_pred             eeecCCceEEEEeCCCCeEEEecCC--------------CCCcceEEEcCCCCEEEEE
Q 026389          192 LEAKPHGKLLKYDPSLNETSILLDS--------------LFFANGVALSKDEDYLVVC  235 (239)
Q Consensus       192 ~e~~~~g~v~~~d~~~~~~~~~~~~--------------l~~pnGia~s~dg~~lyva  235 (239)
                         +..+.+..||..+++....+..              -..-+.|+|+|||++|+.+
T Consensus       253 ---~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~  307 (393)
T d1sq9a_         253 ---NSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSA  307 (393)
T ss_dssp             ---TTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEE
T ss_pred             ---CCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEE
Confidence               0124566788877654333221              1224679999999977644

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=95.80  E-value=0.058  Score=47.51  Aligned_cols=107  Identities=15%  Similarity=0.230  Sum_probs=65.3

Q ss_pred             CCCEEEEeC-CCeEEEEec-C-CcEEEeeec-----c--------CcCccCeEEcCCCCEEEEeCCCCeEEEc-cCCceE
Q 026389           87 NGVLYTATR-DGWIKRLHK-N-GTWENWKLI-----G--------GDTLLGITTTQENEILVCDADKGLLKVT-EEGVTV  149 (239)
Q Consensus        87 ~G~ly~~~~-~g~I~~~~~-~-G~~~~~~~~-----~--------~~p~~Gl~~d~~G~L~v~d~~~g~~~v~-~~g~~~  149 (239)
                      +|.+|+++. +++|+.+|. + |+.. |...     .        .... |+++. +++||+.+....++.+| .+|...
T Consensus        62 ~g~vyv~t~~~~~v~Alda~~tG~~~-W~~~~~~~~~~~~~~~~~~~~r-g~a~~-~~~i~~~~~~g~l~alda~tG~~~  138 (571)
T d2ad6a1          62 GDMMYVHSAFPNNTYALNLNDPGKIV-WQHKPKQDASTKAVMCCDVVDR-GLAYG-AGQIVKKQANGHLLALDAKTGKIN  138 (571)
T ss_dssp             TTEEEEECSTTTCEEEEETTCTTSEE-EEECCCCCGGGGGGCTTCSCCC-CCEEE-TTEEEEECTTSEEEEEETTTCCEE
T ss_pred             CCEEEEecCCCCeEEEEeCCCCCceE-EEecCCCCcccccccccCcCCC-cceee-CCeEEEEeCCCcEEeeehhhhhhh
Confidence            699999885 689999995 4 7642 2211     0        1124 67774 67999999888899999 677222


Q ss_pred             E-ecc---cCCccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEE
Q 026389          150 L-ASH---VNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETS  211 (239)
Q Consensus       150 l-~~~---~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~  211 (239)
                      . ...   ..+.....+  -.+ .++.+|+..+...+            ...|.|..||..||++.
T Consensus       139 w~~~~~~~~~~~~~t~~--p~v-~~~~vivg~~~~~~------------~~~G~v~a~D~~TG~~~  189 (571)
T d2ad6a1         139 WEVEVCDPKVGSTLTQA--PFV-AKDTVLMGCSGAEL------------GVRGAVNAFDLKTGELK  189 (571)
T ss_dssp             EEEECCCGGGTCBCCSC--CEE-ETTEEEEECBCGGG------------TCCCEEEEEETTTCCEE
T ss_pred             ccccccccccccceeec--CeE-eCCeEEEeeccccc------------cccCcEEEEECCCCcEE
Confidence            2 111   111111111  122 24788887655222            23588999999998864

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.64  E-value=0.31  Score=37.11  Aligned_cols=132  Identities=14%  Similarity=0.082  Sum_probs=73.1

Q ss_pred             CCcceEEEcCCCCEEEEeCCCeEEEEec-CCcEEEeeeccCcCccCeEEcCCC-CEEEEeCCCCeEEEc-cCCceEEecc
Q 026389           77 NGPEDVCVDRNGVLYTATRDGWIKRLHK-NGTWENWKLIGGDTLLGITTTQEN-EILVCDADKGLLKVT-EEGVTVLASH  153 (239)
Q Consensus        77 ~gPe~ia~d~~G~ly~~~~~g~I~~~~~-~G~~~~~~~~~~~p~~Gl~~d~~G-~L~v~d~~~g~~~v~-~~g~~~l~~~  153 (239)
                      ..|..+++.+++.+++...++.+..++. +++.......  ... ..++.+++ .++++....+.+++. ....+.....
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~  157 (287)
T d1pgua2          81 SQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRL--NSP-GSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDL  157 (287)
T ss_dssp             SCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEEC--SSC-EEEEEECSSEEEEEETTTSCEEEEETTEEEEEEEC
T ss_pred             cceeeeeeccCCceEEEeecccceeeeccceeeeeeccc--cce-eeeeeccCcceeeeccccceeeeeeccccceeeee
Confidence            3577888888888887777778888775 3443322222  222 34444455 455555555666665 2221111111


Q ss_pred             cCCccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEec-CC-CCCcceEEEcCCC
Q 026389          154 VNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILL-DS-LFFANGVALSKDE  229 (239)
Q Consensus       154 ~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~-~~-l~~pnGia~s~dg  229 (239)
                       ..........++++++|...++...                 .|.|..||..+++..... .. -...+.++|+|++
T Consensus       158 -~~~~~~~v~~~~~s~~~~~l~~g~~-----------------dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~~  217 (287)
T d1pgua2         158 -KTPLRAKPSYISISPSETYIAAGDV-----------------MGKILLYDLQSREVKTSRWAFRTSKINAISWKPAE  217 (287)
T ss_dssp             -SSCCSSCEEEEEECTTSSEEEEEET-----------------TSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC
T ss_pred             -eeccCCceeEEEeccCccccccccc-----------------cccccceeecccccccccccccccccceeeecccc
Confidence             1111123678999999975554433                 478888998777654321 11 2234566666544

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=95.63  E-value=0.11  Score=45.53  Aligned_cols=110  Identities=14%  Similarity=0.260  Sum_probs=62.5

Q ss_pred             CCCEEEEeCCCeEEEEec-CCcEEEeeec------------c-CcCccCeEEcCCCCEEEEeCCCCeEEEc-cCCceEEe
Q 026389           87 NGVLYTATRDGWIKRLHK-NGTWENWKLI------------G-GDTLLGITTTQENEILVCDADKGLLKVT-EEGVTVLA  151 (239)
Q Consensus        87 ~G~ly~~~~~g~I~~~~~-~G~~~~~~~~------------~-~~p~~Gl~~d~~G~L~v~d~~~g~~~v~-~~g~~~l~  151 (239)
                      +|.||+++.+++|+.+|. +|+. .|...            + .... +++.. ++++|+.+....++.+| .+|..+..
T Consensus        66 ~g~vyv~t~~~~v~AlDa~tG~~-lW~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~v~~~~~~g~l~Alda~tG~~~w~  142 (560)
T d1kv9a2          66 DGVIYTSMSWSRVIAVDAASGKE-LWRYDPEVAKVKARTSCCDAVNR-GVALW-GDKVYVGTLDGRLIALDAKTGKAIWS  142 (560)
T ss_dssp             TTEEEEEEGGGEEEEEETTTCCE-EEEECCCCCGGGGGGCTTCSCCC-CCEEE-BTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred             CCEEEEECCCCeEEEEeCCCCCE-EEEECCCCCcccccccccccccc-Cccee-CCeEEEEeCCCEEEEEECCCCcEEec
Confidence            699999999999999996 5654 23211            0 1112 44443 56789988888889999 57722221


Q ss_pred             cccCCc-cccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEE
Q 026389          152 SHVNGS-RINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETS  211 (239)
Q Consensus       152 ~~~~g~-~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~  211 (239)
                      ....+. .......--+--+|.+++......+            ...|.|..||..||++.
T Consensus       143 ~~~~~~~~~~~~~~~p~v~~~~vivg~~~~~~------------~~~G~v~a~D~~TG~~~  191 (560)
T d1kv9a2         143 QQTTDPAKPYSITGAPRVVKGKVIIGNGGAEY------------GVRGFVSAYDADTGKLA  191 (560)
T ss_dssp             EECSCTTSSCBCCSCCEEETTEEEECCBCTTT------------CCBCEEEEEETTTCCEE
T ss_pred             cCccCcccceeeeeeeeeecCcccccccceec------------cccceEEEEECCCceEE
Confidence            111111 1111111111125666665443211            23478999999988764

>d1tl2a_ b.67.1.1 (A:) Tachylectin-2 {Japanese horseshoe crab (Tachypleus tridentatus) [TaxId: 6853]}

class: All beta proteins
fold: 5-bladed beta-propeller
superfamily: Tachylectin-2
family: Tachylectin-2
domain: Tachylectin-2
species: Japanese horseshoe crab (Tachypleus tridentatus) [TaxId: 6853]

Probab=95.23  E-value=0.41  Score=36.08  Aligned_cols=148  Identities=14%  Similarity=0.106  Sum_probs=86.7

Q ss_pred             ccccceEeccCCcCCcceEEEcCCCCEEEEeCCCeEEEEec---CC-cE----EEeeeccCc--CccCeEEcCCCCEEEE
Q 026389           64 DIQSVTRLGEGILNGPEDVCVDRNGVLYTATRDGWIKRLHK---NG-TW----ENWKLIGGD--TLLGITTTQENEILVC  133 (239)
Q Consensus        64 ~l~~~~~l~~g~~~gPe~ia~d~~G~ly~~~~~g~I~~~~~---~G-~~----~~~~~~~~~--p~~Gl~~d~~G~L~v~  133 (239)
                      =+..+..|+.+....=.-|+++|+|+||.... +++++=.+   +. .+    +.+. .++.  =- -+-||++|-||+.
T Consensus        27 ~~~rA~~lGk~g~~n~~~i~fsP~G~LyaVr~-~~lY~Gp~~s~~nq~wf~~atrIG-~ggWn~Fk-flffdP~G~LyaV  103 (235)
T d1tl2a_          27 WLARATLIGKGGWSNFKFLFLSPGGELYGVLN-DKIYKGTPPTHDNDNWMGRAKKIG-NGGWNQFQ-FLFFDPNGYLYAV  103 (235)
T ss_dssp             HHHHSEEEESSSCTTCSEEEECTTSCEEEEET-TEEEEESCCCSTTCCHHHHCEEEE-CSCGGGCS-EEEECTTSCEEEE
T ss_pred             ccchhhhcCcccccceeEEEECCCCcEEEEEC-CeEEECCCCCcchHHHHHhhhhcc-cCcccceE-EEEECCCceEEEe
Confidence            34567778876677777799999999997553 47776432   11 11    1211 1211  12 4778999999998


Q ss_pred             eCCCCeEEEc-cCC--ceEEe--cccCCccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCC
Q 026389          134 DADKGLLKVT-EEG--VTVLA--SHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLN  208 (239)
Q Consensus       134 d~~~g~~~v~-~~g--~~~l~--~~~~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~  208 (239)
                      .. ..+++-- ++.  -..+.  ..+....-+...-+-+||+|.+|...+                   ++++|-.|-++
T Consensus       104 t~-~~LYr~~pPtn~~q~W~g~a~~vG~~gw~df~~lFFdP~G~LYaV~~-------------------~~l~k~~pP~~  163 (235)
T d1tl2a_         104 SK-DKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVHG-------------------QQFYKALPPVS  163 (235)
T ss_dssp             ET-TEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEET-------------------TEEEEECCCSS
T ss_pred             cC-cceecCCcCcccchhhhhhhhhhccCCcCceeEEEECCCceEEEEEC-------------------CcEEEcCCCCC
Confidence            85 3555554 322  11111  011111222334577899999998753                   35777766433


Q ss_pred             e-------EEEec-CCCCCcceEEEcCCCCEEEE
Q 026389          209 E-------TSILL-DSLFFANGVALSKDEDYLVV  234 (239)
Q Consensus       209 ~-------~~~~~-~~l~~pnGia~s~dg~~lyv  234 (239)
                      .       -+.+- .+-..+..|.|+|||....|
T Consensus       164 ~~d~WL~~st~igr~~w~~~~fi~Fs~dG~L~~v  197 (235)
T d1tl2a_         164 NQDNWLARATKIGQGGWDTFKFLFFSSVGTLFGV  197 (235)
T ss_dssp             TTCCHHHHCEEEESSSGGGEEEEEECTTSCEEEE
T ss_pred             CCchhhhhhhhhccCcccCceEEEECCCCcEEEE
Confidence            2       13333 33445679999999985544

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=95.14  E-value=0.14  Score=44.81  Aligned_cols=110  Identities=14%  Similarity=0.219  Sum_probs=65.5

Q ss_pred             CCCEEEEeCCCeEEEEec-CCcEEEeeec-------------cCcCccCeEEcCCCCEEEEeCCCCeEEEc-cCC-ceEE
Q 026389           87 NGVLYTATRDGWIKRLHK-NGTWENWKLI-------------GGDTLLGITTTQENEILVCDADKGLLKVT-EEG-VTVL  150 (239)
Q Consensus        87 ~G~ly~~~~~g~I~~~~~-~G~~~~~~~~-------------~~~p~~Gl~~d~~G~L~v~d~~~g~~~v~-~~g-~~~l  150 (239)
                      +|.||+++.+++|+.+|. +|+. .|...             ..... |+++. ++++|+......++.+| .+| ...-
T Consensus        77 ~g~vyv~t~~~~v~AlDa~TG~~-~W~~~~~~~~~~~~~~~~~~~~~-g~~~~-~~~v~~~t~~g~l~alda~tG~~~W~  153 (573)
T d1kb0a2          77 DGIMYVSASWSVVHAIDTRTGNR-IWTYDPQIDRSTGFKGCCDVVNR-GVALW-KGKVYVGAWDGRLIALDAATGKEVWH  153 (573)
T ss_dssp             TTEEEEECGGGCEEEEETTTTEE-EEEECCCCCGGGGGGSSSCSCCC-CCEEE-TTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred             CCEEEEECCCCeEEEEeCCCCCe-EEEeCCCCCcccccccccccccc-cceEE-CCcEEEEecccceeeeccccccceec
Confidence            699999999999999997 4753 34321             01123 55663 67899998888888998 577 3222


Q ss_pred             ecccCCccc-cccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEE
Q 026389          151 ASHVNGSRI-NLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETS  211 (239)
Q Consensus       151 ~~~~~g~~~-~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~  211 (239)
                      ....++... .....--+-.+|.+|+......            ....|.|+.||..+|++.
T Consensus       154 ~~~~~~~~~~~~~~~~p~v~~~~vivg~~~~~------------~~~~G~v~a~D~~TG~~~  203 (573)
T d1kb0a2         154 QNTFEGQKGSLTITGAPRVFKGKVIIGNGGAE------------YGVRGYITAYDAETGERK  203 (573)
T ss_dssp             EETTTTCCSSCBCCSCCEEETTEEEECCBCTT------------TCCBCEEEEEETTTCCEE
T ss_pred             ccCccCCcceEEeecceEEEeccEEEeecccc------------ccccceEEEEecCCccce
Confidence            211222111 1112222223567777654421            123588999999988763

>d1tl2a_ b.67.1.1 (A:) Tachylectin-2 {Japanese horseshoe crab (Tachypleus tridentatus) [TaxId: 6853]}

class: All beta proteins
fold: 5-bladed beta-propeller
superfamily: Tachylectin-2
family: Tachylectin-2
domain: Tachylectin-2
species: Japanese horseshoe crab (Tachypleus tridentatus) [TaxId: 6853]

Probab=94.70  E-value=0.058  Score=40.94  Aligned_cols=109  Identities=14%  Similarity=0.135  Sum_probs=65.6

Q ss_pred             ccceEeccCCcCCcceEEEcCCCCEEEEeCCCeEEEEec-CCcEEEe-------eec-cCcCccCeEEcCCCCEEEEeCC
Q 026389           66 QSVTRLGEGILNGPEDVCVDRNGVLYTATRDGWIKRLHK-NGTWENW-------KLI-GGDTLLGITTTQENEILVCDAD  136 (239)
Q Consensus        66 ~~~~~l~~g~~~gPe~ia~d~~G~ly~~~~~g~I~~~~~-~G~~~~~-------~~~-~~~p~~Gl~~d~~G~L~v~d~~  136 (239)
                      ..+++|+.+.-..=.=+-+||+|.||... +++++|=.+ +.+-+.|       ... ...-- -|-||++|.||.....
T Consensus        76 ~~atrIG~ggWn~FkflffdP~G~LyaVt-~~~LYr~~pPtn~~q~W~g~a~~vG~~gw~df~-~lFFdP~G~LYaV~~~  153 (235)
T d1tl2a_          76 GRAKKIGNGGWNQFQFLFFDPNGYLYAVS-KDKLYKASPPQSDTDNWIARATEVGSGGWSGFK-FLFFHPNGYLYAVHGQ  153 (235)
T ss_dssp             HHCEEEECSCGGGCSEEEECTTSCEEEEE-TTEEEEESCCCSTTCCHHHHSEEEECSSGGGEE-EEEECTTSCEEEEETT
T ss_pred             HhhhhcccCcccceEEEEECCCceEEEec-CcceecCCcCcccchhhhhhhhhhccCCcCcee-EEEECCCceEEEEECC
Confidence            55788887743334457999999999666 479999764 3221111       111 11122 4788999999988654


Q ss_pred             CCeEEEc-cCC--ceEEec--ccCCccccccccEEEcCCCCEEEEe
Q 026389          137 KGLLKVT-EEG--VTVLAS--HVNGSRINLADDLIAATDGSIYFSV  177 (239)
Q Consensus       137 ~g~~~v~-~~g--~~~l~~--~~~g~~~~~pn~l~vd~dG~iy~td  177 (239)
                       ++++-. +.+  -..|..  .+....-..+.-+.+.+||+||...
T Consensus       154 -~l~k~~pP~~~~d~WL~~st~igr~~w~~~~fi~Fs~dG~L~~v~  198 (235)
T d1tl2a_         154 -QFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVGTLFGVQ  198 (235)
T ss_dssp             -EEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTSCEEEEE
T ss_pred             -cEEEcCCCCCCCchhhhhhhhhccCcccCceEEEECCCCcEEEEe
Confidence             577776 332  222110  0111112335689999999998774

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=94.51  E-value=0.28  Score=37.19  Aligned_cols=57  Identities=12%  Similarity=0.061  Sum_probs=43.5

Q ss_pred             cEEEcCCC-CEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecCCCCCcceEEEcCCCCEEEEE
Q 026389          164 DLIAATDG-SIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVC  235 (239)
Q Consensus       164 ~l~vd~dG-~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~~l~~pnGia~s~dg~~lyva  235 (239)
                      ..++.||| .|.|+....               ....++.++..++..+.+...........++|||+.++..
T Consensus        43 sP~wSPDGk~IAf~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~i~~~  100 (269)
T d2hqsa1          43 SPAWSPDGSKLAYVTFES---------------GRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFA  100 (269)
T ss_dssp             EEEECTTSSEEEEEECTT---------------SSCEEEEEETTTCCEEEEECCSSCEEEEEECTTSSEEEEE
T ss_pred             eeEECCCCCEEEEEEeec---------------cCcceeeeecccCceeEEeeeecccccceecCCCCeeeEe
Confidence            45899999 676665431               2357888998888888888777778889999999987653

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.51  E-value=0.35  Score=36.94  Aligned_cols=91  Identities=11%  Similarity=0.096  Sum_probs=51.0

Q ss_pred             CEEEEeCCCeEEEEecCC-cE-EEeeeccCcCccCeEEcCCCCEEEEeCCCCeEEEc--cCC--ceEEecccCCcccccc
Q 026389           89 VLYTATRDGWIKRLHKNG-TW-ENWKLIGGDTLLGITTTQENEILVCDADKGLLKVT--EEG--VTVLASHVNGSRINLA  162 (239)
Q Consensus        89 ~ly~~~~~g~I~~~~~~G-~~-~~~~~~~~~p~~Gl~~d~~G~L~v~d~~~g~~~v~--~~g--~~~l~~~~~g~~~~~p  162 (239)
                      .+++++.++.|..|+... +. ..+.........-..+..+++++++-...|.+++.  .+|  +..+.....+..-...
T Consensus       229 ~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~Dg~i~iwd~~tg~~i~~~~~~~~~~~~~~v  308 (342)
T d2ovrb2         229 ILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVV  308 (342)
T ss_dssp             EEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEE
T ss_pred             EEEEEcCCCEEEEEecccccccccccccceeeeceeecccCCCeeEEEcCCCEEEEEECCCCCEEEEEecccCCCCCCCE
Confidence            556777999999998643 32 22222222222012334456677766667888875  456  3444322111112236


Q ss_pred             ccEEEcCCCCEEEEeCC
Q 026389          163 DDLIAATDGSIYFSVAS  179 (239)
Q Consensus       163 n~l~vd~dG~iy~td~~  179 (239)
                      +.++++++|.++++...
T Consensus       309 ~~v~~s~~~~~la~g~~  325 (342)
T d2ovrb2         309 WRIRASNTKLVCAVGSR  325 (342)
T ss_dssp             EEEEECSSEEEEEEECS
T ss_pred             EEEEECCCCCEEEEEeC
Confidence            78999999987776543

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=94.35  E-value=0.47  Score=35.79  Aligned_cols=135  Identities=9%  Similarity=0.021  Sum_probs=69.3

Q ss_pred             eEEEcCCCC-EE-EEe--CCCeEEEEecCC-cEEEeeeccCcCccCeEEcCCCCEEEEeC-CC-CeEEEc-c--CCceEE
Q 026389           81 DVCVDRNGV-LY-TAT--RDGWIKRLHKNG-TWENWKLIGGDTLLGITTTQENEILVCDA-DK-GLLKVT-E--EGVTVL  150 (239)
Q Consensus        81 ~ia~d~~G~-ly-~~~--~~g~I~~~~~~G-~~~~~~~~~~~p~~Gl~~d~~G~L~v~d~-~~-g~~~v~-~--~g~~~l  150 (239)
                      ..+|+|||. |. +..  ....++.++.++ ..+......+... ...+.++|+.++... .. ...... .  ......
T Consensus        43 sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~spdg~~i~~~~~~~~~~~~~~~~~~~~~~~~  121 (269)
T d2hqsa1          43 SPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNG-APAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQ  121 (269)
T ss_dssp             EEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEECCSSCEE-EEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEE
T ss_pred             eeEECCCCCEEEEEEeeccCcceeeeecccCceeEEeeeecccc-cceecCCCCeeeEeeecCCccceeeccccccccee
Confidence            349999985 43 444  334677777654 4445555556666 778889996444322 22 111111 1  111111


Q ss_pred             ecccCCccccccccEEEcCCC-CEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecCCCCCcceEEEcCCC
Q 026389          151 ASHVNGSRINLADDLIAATDG-SIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDE  229 (239)
Q Consensus       151 ~~~~~g~~~~~pn~l~vd~dG-~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~~l~~pnGia~s~dg  229 (239)
                      ..  .+.  ..........++ .++++...               .+...++.++.+++....+......-....++|||
T Consensus       122 ~~--~~~--~~~~~~~~~~~~~~~~~~~~~---------------~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~spdg  182 (269)
T d2hqsa1         122 VT--DGR--SNNTEPTWFPDSQNLAFTSDQ---------------AGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDG  182 (269)
T ss_dssp             CC--CCS--SCEEEEEECTTSSEEEEEECT---------------TSSCEEEEEETTSSCCEECCCSSSEEEEEEECTTS
T ss_pred             ee--ecc--ccccccccccccccceecccc---------------cCCceEeeeecccccceeeeccccccccccccccc
Confidence            11  111  011122334444 34444322               12347888888877665555544444566788999


Q ss_pred             CEEEEE
Q 026389          230 DYLVVC  235 (239)
Q Consensus       230 ~~lyva  235 (239)
                      +.++..
T Consensus       183 ~~~~~~  188 (269)
T d2hqsa1         183 KFMVMV  188 (269)
T ss_dssp             SEEEEE
T ss_pred             ceeEEE
Confidence            877654

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.32  E-value=0.49  Score=36.25  Aligned_cols=60  Identities=10%  Similarity=0.121  Sum_probs=36.8

Q ss_pred             eEEEcCCCCEEEEeCCCeEEEEec-CCcE-EEeeeccCcCccCeEEcCCCCEEEEeCCCCeEEEc
Q 026389           81 DVCVDRNGVLYTATRDGWIKRLHK-NGTW-ENWKLIGGDTLLGITTTQENEILVCDADKGLLKVT  143 (239)
Q Consensus        81 ~ia~d~~G~ly~~~~~g~I~~~~~-~G~~-~~~~~~~~~p~~Gl~~d~~G~L~v~d~~~g~~~v~  143 (239)
                      .+.+| +..|++++.||.|..||. +++. ..+....+... .+++.+++.|+.+.. .+.+++.
T Consensus        18 c~~~~-~~~l~tgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~-~l~~s~~~~l~s~s~-D~~i~iw   79 (355)
T d1nexb2          18 CLQFE-DNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVW-ALKYAHGGILVSGST-DRTVRVW   79 (355)
T ss_dssp             EEEEE-TTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEE-EEEEETTTEEEEEET-TCCEEEE
T ss_pred             EEEEC-CCEEEEEeCCCeEEEEECCCCcEEEEEECCCCCEE-EEEEcCCCEEEEEec-ccccccc
Confidence            34554 234667889999999996 4543 33333334455 889987665555544 5556554

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.00  E-value=0.3  Score=41.39  Aligned_cols=131  Identities=9%  Similarity=-0.011  Sum_probs=66.4

Q ss_pred             EEcCCCCEEEEeCCCeEEEEec-CCcEEEeeecc----CcCccCeEEcCCCC--EEEEeC-------CCCeEEE-c-cCC
Q 026389           83 CVDRNGVLYTATRDGWIKRLHK-NGTWENWKLIG----GDTLLGITTTQENE--ILVCDA-------DKGLLKV-T-EEG  146 (239)
Q Consensus        83 a~d~~G~ly~~~~~g~I~~~~~-~G~~~~~~~~~----~~p~~Gl~~d~~G~--L~v~d~-------~~g~~~v-~-~~g  146 (239)
                      .|.+++.++.-+.+|.|+.++. +++.+.+....    -.+. ...+.+||+  |+..+.       ..+.+.+ + .+|
T Consensus        23 ~W~~~~~~~~~~~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~  101 (465)
T d1xfda1          23 KWISDTEFIYREQKGTVRLWNVETNTSTVLIEGKKIESLRAI-RYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHG  101 (465)
T ss_dssp             CBSSSSCBCCCCSSSCEEEBCGGGCCCEEEECTTTTTTTTCS-EEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSC
T ss_pred             EEeCCCcEEEEeCCCcEEEEECCCCCEEEEEcCccccccccc-eeEECCCCCeEEEEEcccceeEeeccccEEEEEccCC
Confidence            4555655554456778888885 34433332221    1233 456789986  343442       1244444 4 456


Q ss_pred             -ceEEecccCCccccccccEEEcCCC-CEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEec-CC-------
Q 026389          147 -VTVLASHVNGSRINLADDLIAATDG-SIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILL-DS-------  216 (239)
Q Consensus       147 -~~~l~~~~~g~~~~~pn~l~vd~dG-~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~-~~-------  216 (239)
                       .+.+.....+.  ....-..++||| .|.|.-.                   +.||..+..+++...+. ++       
T Consensus       102 ~~~~l~~~~~~~--~~l~~~~wSPDG~~iafv~~-------------------~nl~~~~~~~~~~~~lt~~g~~~~i~n  160 (465)
T d1xfda1         102 DPQSLDPPEVSN--AKLQYAGWGPKGQQLIFIFE-------------------NNIYYCAHVGKQAIRVVSTGKEGVIYN  160 (465)
T ss_dssp             CCEECCCTTCCS--CCCSBCCBCSSTTCEEEEET-------------------TEEEEESSSSSCCEEEECCCBTTTEEE
T ss_pred             ceeeccCccCCc--cccceeeeccCCceEEEEec-------------------ceEEEEecCCCceEEEecccCcceeec
Confidence             55443221111  112235667887 5544431                   34555554443332222 11       


Q ss_pred             -----------CCCcceEEEcCCCCEEEEE
Q 026389          217 -----------LFFANGVALSKDEDYLVVC  235 (239)
Q Consensus       217 -----------l~~pnGia~s~dg~~lyva  235 (239)
                                 .....++-+||||++|.+.
T Consensus       161 G~~d~vyeee~~~~~~a~~WSPDgk~iaf~  190 (465)
T d1xfda1         161 GLSDWLYEEEILKTHIAHWWSPDGTRLAYA  190 (465)
T ss_dssp             EECCHHHHHTTSSSSEEEEECTTSSEEEEE
T ss_pred             cccchhhhhhhccccceEEECCCCCeEEEE
Confidence                       1234578899999998775

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.72  E-value=1  Score=34.24  Aligned_cols=109  Identities=13%  Similarity=0.049  Sum_probs=62.2

Q ss_pred             cCCcceEEEcCCCCEE-EEeCCCeEEEEec-CCcEE-EeeeccCcCccCeEEcCCCCEEEEeCCCCeEEEc--cCCceEE
Q 026389           76 LNGPEDVCVDRNGVLY-TATRDGWIKRLHK-NGTWE-NWKLIGGDTLLGITTTQENEILVCDADKGLLKVT--EEGVTVL  150 (239)
Q Consensus        76 ~~gPe~ia~d~~G~ly-~~~~~g~I~~~~~-~G~~~-~~~~~~~~p~~Gl~~d~~G~L~v~d~~~g~~~v~--~~g~~~l  150 (239)
                      ......+.+++++..+ ++..++.|..++. +++.. .+........ .++++  ++.+++-...|.+++.  .++.+.+
T Consensus       201 ~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~v~-~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~  277 (355)
T d1nexb2         201 TDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVG-LLRLS--DKFLVSAAADGSIRGWDANDYSRKF  277 (355)
T ss_dssp             SSCEEEEEEETTTTEEEEEETTSCEEEEETTTCCEEEEECCCSSCCC-EEEEC--SSEEEEECTTSEEEEEETTTCCEEE
T ss_pred             ccccccccccccceeeecccccceEEeeecccccccccccccccccc-ccccc--cceeeeeecccccccccccccceec
Confidence            3455667888876544 6678999988885 34432 2222223334 66664  5566666667777775  3443333


Q ss_pred             ecccCCccccccccE-EEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeE
Q 026389          151 ASHVNGSRINLADDL-IAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNET  210 (239)
Q Consensus       151 ~~~~~g~~~~~pn~l-~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~  210 (239)
                      .....     ....+ .+.++++++++.+                  .|.|..||..+++.
T Consensus       278 ~~~~~-----~~~~~~~~~~~~~~l~~g~------------------d~~i~vwd~~tg~~  315 (355)
T d1nexb2         278 SYHHT-----NLSAITTFYVSDNILVSGS------------------ENQFNIYNLRSGKL  315 (355)
T ss_dssp             EEECT-----TCCCCCEEEECSSEEEEEE------------------TTEEEEEETTTCCB
T ss_pred             ccccC-----CceEEEEEcCCCCEEEEEe------------------CCEEEEEECCCCCE
Confidence            21111     12222 3455677766643                  37888899877764

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=92.55  E-value=2.9  Score=36.09  Aligned_cols=57  Identities=16%  Similarity=0.325  Sum_probs=41.1

Q ss_pred             CCCEEEEeCCCeEEEEec-CCcEEEeeec-----------cCcCccCeEEcCCCCEEEEeCCCCeEEEc-cCC
Q 026389           87 NGVLYTATRDGWIKRLHK-NGTWENWKLI-----------GGDTLLGITTTQENEILVCDADKGLLKVT-EEG  146 (239)
Q Consensus        87 ~G~ly~~~~~g~I~~~~~-~G~~~~~~~~-----------~~~p~~Gl~~d~~G~L~v~d~~~g~~~v~-~~g  146 (239)
                      +|.||+++.+++|+.+|. +|+.. |...           ..... |++.. ++++|+.+....++.+| .+|
T Consensus        68 ~g~vy~~t~~~~v~AlDa~TG~~l-W~~~~~~~~~~~~~~~~~~r-g~a~~-~~~i~~~t~~~~l~alda~tG  137 (582)
T d1flga_          68 DGVIYVTASYSRLFALDAKTGKRL-WTYNHRLPDDIRPCCDVVNR-GAAIY-GDKVFFGTLDASVVALNKNTG  137 (582)
T ss_dssp             TTEEEEEETTTEEEEEESSSCCEE-EEEECCCCTTCCCSSCSCCC-CCEEE-TTEEEEEETTTEEEEEESSSC
T ss_pred             CCEEEEeCCCCeEEEEeCCCCCeE-EEEcCCCCCccccccccccC-CceEe-CCceEEecCCCeEEEeccccc
Confidence            689999999999999997 57642 3211           11123 56663 57899999888899999 567

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=92.11  E-value=1.8  Score=35.25  Aligned_cols=133  Identities=11%  Similarity=0.133  Sum_probs=68.5

Q ss_pred             CCCCEEEE-eCCCeEEEEecCCcEEEeeeccCcCccCeEEc------CCCC--EEEEeCCCC-----eEEEcc-CC-ceE
Q 026389           86 RNGVLYTA-TRDGWIKRLHKNGTWENWKLIGGDTLLGITTT------QENE--ILVCDADKG-----LLKVTE-EG-VTV  149 (239)
Q Consensus        86 ~~G~ly~~-~~~g~I~~~~~~G~~~~~~~~~~~p~~Gl~~d------~~G~--L~v~d~~~g-----~~~v~~-~g-~~~  149 (239)
                      |+..|.++ ++++-|+.|+.+|+...+. ..++++ .+.+-      .++.  ++++++..+     ++.++. ++ .+.
T Consensus        38 p~~SlI~gTdK~~Gl~vYdL~G~~l~~~-~~Gr~N-NVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~l~~  115 (353)
T d1h6la_          38 PQNSKLITTNKKSGLAVYSLEGKMLHSY-HTGKLN-NVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQS  115 (353)
T ss_dssp             GGGCEEEEEETTSCCEEEETTCCEEEEC-CSSCEE-EEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTEEEE
T ss_pred             cCccEEEEEcCcCCEEEEcCCCcEEEec-ccCCcC-ccccccccccCCcceEEEEEeCCcCcceeEEEEEecCccccccc
Confidence            34555544 4666799999888765443 346766 55542      1121  344454322     233343 33 333


Q ss_pred             EecccC--CccccccccEEE--cCC-CCEEEEeCCCCcCcccccccceeecCCceEEE--EeC-CCCeEE-Ee---cCCC
Q 026389          150 LASHVN--GSRINLADDLIA--ATD-GSIYFSVASTKFGLHNWGLDLLEAKPHGKLLK--YDP-SLNETS-IL---LDSL  217 (239)
Q Consensus       150 l~~~~~--g~~~~~pn~l~v--d~d-G~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~--~d~-~~~~~~-~~---~~~l  217 (239)
                      +.....  ...+..+.|++.  ++. |.+|+--..                ..|++..  +.. ..+.+. .+   ...-
T Consensus       116 ~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~----------------k~G~v~q~~l~~~~~g~v~~~lvr~f~~~  179 (353)
T d1h6la_         116 ITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTG----------------KEGEFEQYELNADKNGYISGKKVRAFKMN  179 (353)
T ss_dssp             CSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEEC----------------SSSEEEEEEEEECTTSSEEEEEEEEEECS
T ss_pred             ccccccccccccCcceEEEEEecCCCCeEEEEEEc----------------CCceEEEEEEEcCCCCceeeEeeeccCCC
Confidence            322110  012234789998  654 666543221                1244433  322 223221 11   1223


Q ss_pred             CCcceEEEcCCCCEEEEEe
Q 026389          218 FFANGVALSKDEDYLVVCE  236 (239)
Q Consensus       218 ~~pnGia~s~dg~~lyvad  236 (239)
                      ..+.|++++.+.++|||+|
T Consensus       180 ~q~EGCVvDde~~~LyisE  198 (353)
T d1h6la_         180 SQTEGMAADDEYGSLYIAE  198 (353)
T ss_dssp             SCEEEEEEETTTTEEEEEE
T ss_pred             CccceEEEeCCCCcEEEec
Confidence            5688999999999999997

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.22  E-value=0.23  Score=42.16  Aligned_cols=96  Identities=11%  Similarity=0.000  Sum_probs=53.5

Q ss_pred             CCCCEEEEeCCCCeEEEc-cCC-ceEEecccCCccccccccEEEcCCCC-EEE-EeCCCCcCcccccccceeecCCceEE
Q 026389          126 QENEILVCDADKGLLKVT-EEG-VTVLASHVNGSRINLADDLIAATDGS-IYF-SVASTKFGLHNWGLDLLEAKPHGKLL  201 (239)
Q Consensus       126 ~~G~L~v~d~~~g~~~v~-~~g-~~~l~~~~~g~~~~~pn~l~vd~dG~-iy~-td~~~~~~~~~~~~~~~e~~~~g~v~  201 (239)
                      .++.++..+...+++.++ .++ .+++.+...-.. ..+.+..+.|||+ |+| +|....|          .+.-.|.++
T Consensus        26 ~~~~~~~~~~~g~i~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~SpD~~~vl~~~~~~~~~----------r~s~~~~~~   94 (465)
T d1xfda1          26 SDTEFIYREQKGTVRLWNVETNTSTVLIEGKKIES-LRAIRYEISPDREYALFSYNVEPIY----------QHSYTGYYV   94 (465)
T ss_dssp             SSSCBCCCCSSSCEEEBCGGGCCCEEEECTTTTTT-TTCSEEEECTTSSEEEEEESCCCCS----------SSCCCSEEE
T ss_pred             CCCcEEEEeCCCcEEEEECCCCCEEEEEcCccccc-cccceeEECCCCCeEEEEEccccee----------EeeccccEE
Confidence            444444445545566666 455 555544321111 2356778999994 444 4433222          223358899


Q ss_pred             EEeCCCCeEEEecCCCCCcc---eEEEcCCCCEE
Q 026389          202 KYDPSLNETSILLDSLFFAN---GVALSKDEDYL  232 (239)
Q Consensus       202 ~~d~~~~~~~~~~~~l~~pn---Gia~s~dg~~l  232 (239)
                      .||..+++.+.+...-....   -..+||||+.|
T Consensus        95 i~d~~~~~~~~l~~~~~~~~~l~~~~wSPDG~~i  128 (465)
T d1xfda1          95 LSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQL  128 (465)
T ss_dssp             EEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCE
T ss_pred             EEEccCCceeeccCccCCccccceeeeccCCceE
Confidence            99999888776643222221   25678888766

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=91.07  E-value=0.78  Score=40.14  Aligned_cols=109  Identities=19%  Similarity=0.211  Sum_probs=61.8

Q ss_pred             CCCEEEEe-CCCeEEEEec--CCcEEEeeec------------cCcCccCeEEcCCC-----CEEEEeCCCCeEEEc-cC
Q 026389           87 NGVLYTAT-RDGWIKRLHK--NGTWENWKLI------------GGDTLLGITTTQEN-----EILVCDADKGLLKVT-EE  145 (239)
Q Consensus        87 ~G~ly~~~-~~g~I~~~~~--~G~~~~~~~~------------~~~p~~Gl~~d~~G-----~L~v~d~~~g~~~v~-~~  145 (239)
                      +|.||+++ ..++|+.++.  +|+.. |...            +...++|+++-.+.     ++|+.+....++.+| .+
T Consensus        62 ~g~ly~~t~~~~~v~a~d~~~tG~~~-W~~~~~~~~~~~~~~~~~~~~RGv~~~~~~~~~~~~v~~~t~dg~l~Alda~t  140 (596)
T d1w6sa_          62 DGKMYIHTSFPNNTFALGLDDPGTIL-WQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAET  140 (596)
T ss_dssp             TTEEEEECSTTTCEEEEETTCTTSEE-EEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTT
T ss_pred             CCEEEEeeCCCCcEEEEeCCCCCCEE-EEecCCCCcccccccccccccceeEEecCCCCCceEEEEEeCCCCeEeecccc
Confidence            68999876 4688999984  47642 3211            11111277764221     488888777899999 67


Q ss_pred             C-ceEEeccc---CCccccccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEE
Q 026389          146 G-VTVLASHV---NGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETS  211 (239)
Q Consensus       146 g-~~~l~~~~---~g~~~~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~  211 (239)
                      | ...-....   .+.....+  -.+ -++.+|+..+...+            ...|.|..||..||++.
T Consensus       141 G~~~w~~~~~d~~~~~~~t~~--P~v-~~~~vivg~~~~e~------------~~~G~v~A~Da~TG~~~  195 (596)
T d1w6sa_         141 GETVWKVENSDIKVGSTLTIA--PYV-VKDKVIIGSSGAEL------------GVRGYLTAYDVKTGEQV  195 (596)
T ss_dssp             CCEEEEEECCCGGGTCBCCSC--CEE-ETTEEEECCBCGGG------------TCCCEEEEEETTTCCEE
T ss_pred             CceeccccccccccccccccC--CcE-ECCeEEEeeccccc------------cccCceEEEECCCCcEE
Confidence            7 22211111   11111111  112 25678887655222            23589999999998874

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=88.82  E-value=2.6  Score=31.43  Aligned_cols=63  Identities=10%  Similarity=0.012  Sum_probs=38.3

Q ss_pred             ceEEEcCCCCEE-EEeCCCeEEEEecC--CcEEEee---eccCcCccCeEEcCCC-CEEEEeCCCCeEEEc
Q 026389           80 EDVCVDRNGVLY-TATRDGWIKRLHKN--GTWENWK---LIGGDTLLGITTTQEN-EILVCDADKGLLKVT  143 (239)
Q Consensus        80 e~ia~d~~G~ly-~~~~~g~I~~~~~~--G~~~~~~---~~~~~p~~Gl~~d~~G-~L~v~d~~~g~~~v~  143 (239)
                      .+|+|+|+|.+. +++.||.|..|+.+  .....+.   ...+... .++|.+++ .++++-...+.+++.
T Consensus        15 ~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~-~v~f~~~~~~~l~sg~~d~~v~~w   84 (342)
T d1yfqa_          15 SDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLL-CCNFIDNTDLQIYVGTVQGEILKV   84 (342)
T ss_dssp             EEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEE-EEEEEESSSEEEEEEETTSCEEEE
T ss_pred             EEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEE-EEEEeCCCCCEEEEcccccceeee
Confidence            679999988655 77799999888742  2222221   2233345 78887654 455544445666654

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=88.05  E-value=0.25  Score=41.89  Aligned_cols=52  Identities=12%  Similarity=0.077  Sum_probs=42.1

Q ss_pred             CCC-CEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEec--CCCCCcceEEEcCCCCEEEEEeC
Q 026389          169 TDG-SIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILL--DSLFFANGVALSKDEDYLVVCET  237 (239)
Q Consensus       169 ~dG-~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~--~~l~~pnGia~s~dg~~lyvadt  237 (239)
                      .|| .+|++|..                 ++||.|+|.++.++..++  .+...+.|+...+++++.||.+.
T Consensus        97 yDGrylFVNDka-----------------n~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~  151 (459)
T d1fwxa2          97 YDGRFLFMNDKA-----------------NTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCN  151 (459)
T ss_dssp             EEEEEEEEEETT-----------------TTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEE
T ss_pred             cceeEEEEEcCC-----------------CceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEcc
Confidence            478 57788765                 689999999999986654  56778899999999999998764

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=81.80  E-value=9.9  Score=29.58  Aligned_cols=58  Identities=17%  Similarity=0.127  Sum_probs=39.6

Q ss_pred             cccccEEEcCCCCEEEEeCCCCcCcccccccceeecCCceEEEEeCCCCeEEEecCCCCCc---ceEEEcCCCCEEEE
Q 026389          160 NLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFA---NGVALSKDEDYLVV  234 (239)
Q Consensus       160 ~~pn~l~vd~dG~iy~td~~~~~~~~~~~~~~~e~~~~g~v~~~d~~~~~~~~~~~~l~~p---nGia~s~dg~~lyv  234 (239)
                      .+..+.++..||.||+.-...                ...+.+||+.+.+-+.+.. +..+   .+.++.+||+.+++
T Consensus        76 ~~~~~~~~~~~g~i~v~Gg~~----------------~~~~~~yd~~~~~w~~~~~-~~~~r~~~~~~~~~dG~v~v~  136 (387)
T d1k3ia3          76 MFCPGISMDGNGQIVVTGGND----------------AKKTSLYDSSSDSWIPGPD-MQVARGYQSSATMSDGRVFTI  136 (387)
T ss_dssp             CSSCEEEECTTSCEEEECSSS----------------TTCEEEEEGGGTEEEECCC-CSSCCSSCEEEECTTSCEEEE
T ss_pred             cceeEEEEecCCcEEEeecCC----------------CcceeEecCccCccccccc-ccccccccceeeecCCceeee
Confidence            456688999999999986431                2468889998877665432 2222   46777788885544

>d2ebsa1 b.69.13.1 (A:4-430) Oligoxyloglucan reducing end-specific cellobiohydrolase {Yeast (Geotrichum sp. M128) [TaxId: 203496]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Oligoxyloglucan reducing end-specific cellobiohydrolase
family: Oligoxyloglucan reducing end-specific cellobiohydrolase
domain: Oligoxyloglucan reducing end-specific cellobiohydrolase
species: Yeast (Geotrichum sp. M128) [TaxId: 203496]

Probab=80.71  E-value=12  Score=29.91  Aligned_cols=101  Identities=15%  Similarity=0.178  Sum_probs=55.3

Q ss_pred             CCcceEEEcCC--CCEEEEeCCCeEEEEecCCc-EEEeeec-------cCcCccCeEEcCCC--CEEEEeCC-----CCe
Q 026389           77 NGPEDVCVDRN--GVLYTATRDGWIKRLHKNGT-WENWKLI-------GGDTLLGITTTQEN--EILVCDAD-----KGL  139 (239)
Q Consensus        77 ~gPe~ia~d~~--G~ly~~~~~g~I~~~~~~G~-~~~~~~~-------~~~p~~Gl~~d~~G--~L~v~d~~-----~g~  139 (239)
                      ..-.+|+++|.  ..+|++...|-|+|-+-.|+ ++.+...       ..... .|++|+.+  ++|++...     .+-
T Consensus        12 g~~~~i~~~P~~~~~~ya~~~~gGv~~S~dgG~tW~~~~~~~~~~~~~~~~~~-~iavdp~np~~vy~~tg~~~~~~~~g   90 (427)
T d2ebsa1          12 GYITGIVAHPKTKDLLYARTDIGGAYRWDAGTSKWIPLNDFIEAQDMNIMGTE-SIALDPNNPDRLYLAQGRYVGDEWAA   90 (427)
T ss_dssp             SCEEEEEECSSSTTCEEEEESSSCEEEEETTTTEEEESCTTCCGGGGGGCSEE-EEEEETTEEEEEEEEECSCTTSSCCE
T ss_pred             CcEEEEEECCCCCCEEEEEecCCCEEEEECCCCceEECCCCCCCCCcccccEe-EEEECCCCCCEEEEEeccccCCcCcc
Confidence            34568999983  57999888888988764454 5443211       11223 57888764  68887522     123


Q ss_pred             EEEc-cCCce--EEeccc----CCccccccccEEEcCCC--CEEEEeC
Q 026389          140 LKVT-EEGVT--VLASHV----NGSRINLADDLIAATDG--SIYFSVA  178 (239)
Q Consensus       140 ~~v~-~~g~~--~l~~~~----~g~~~~~pn~l~vd~dG--~iy~td~  178 (239)
                      +.+. ..|..  .+....    ..........++++|..  .+|++..
T Consensus        91 i~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~i~v~P~~~~~v~~~~~  138 (427)
T d2ebsa1          91 FYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTR  138 (427)
T ss_dssp             EEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEECTTCTTCEEEECS
T ss_pred             EEEeCCCCccceeecCCcccCccccCccceeEEEECCCccCccccccc
Confidence            3444 44432  222211    11112234568899863  6787643