Citrus Sinensis ID: 026410

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------24
MNYSDLCMQYVASGIDLLEKLINVHVCRFQMAAEPVNLNEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFTSSSSIEEVAASCNAVRFYQLYVFKKRDIAATLVQRAERNGFKALVLTADTPRLGRREADIKNKMITPPLKNLEGLLSTKVSSDTGSNFEADAKRPWMLL
ccccccccHHccccccHHHHHHHHHHHccccccccccHHHHHHHHHHHccHHHHHHHcccccHHHHHHHHHHHHcccccccccccccccccccEEEccccccccEEEcHHHHHHccccHHHHHHHHHHHHccccEEEcccccccHHHHHHccccccEEEEcccccHHHHHHHHHHHHHccccEEEEEEccccccccHHHHHcccccccccccccccccccccccccccccccccccccc
ccHHHHHHHHHHHHHHHHHHHHccccHHHccccccccHHHHHHHHHHHcccHHHHHHccccccHHHHHHHHHHHHHcccccHEEEEcccccccEEEccccccccEEEccHcHcccccccHHHHHHHHHHHccccEEEEEccEccHHHHHHHccccEEEEEEEEccHHHHHHHHHHHHHccccEEEEEEccccccccHHHHHccccccccccHHHHHcHccccHHHHcHccccccEEEEc
MNYSDLCMQYVASGIDLLEKLINVHVCRFqmaaepvnlNEFQELARLALPKMYYdfyaggaedehTLKENVEAFhritfrprilvdvsriDLSTTildykisapiiiaptalhklanpegeVATARAAASCNTIMVLSFTSSSSIEEVAASCNAVRFYQLYVFKKRDIAATLVQRAERNGFKALVltadtprlgrreadiknkmitpplknlegllstkvssdtgsnfeadakrpwmll
MNYSDLCMQYVASGIDLLEKLINVHVCRFQMAAEPVNLNEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFhritfrprilvdvsRIDLSTTILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFTSSSSIEEVAASCNAVRFYQLYVFKKRDIAATLVQRaerngfkalvltadtprlgrreadiknkmitpplknlegllstkvssdtgsnfeadakrpwmll
MNYSDLCMQYVASGIDLLEKLINVHVCRFQMAAEPVNLNEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFTSSSSIEEVAASCNAVRFYQLYVFKKRDIAATLVQRAERNGFKALVLTADTPRLGRREADIKNKMITPPLKNLEGLLSTKVSSDTGSNFEADAKRPWMLL
****DLCMQYVASGIDLLEKLINVHVCRFQMAAEPVNLNEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFTSSSSIEEVAASCNAVRFYQLYVFKKRDIAATLVQRAERNGFKALVLTADT*************************************************
**********************************PVNLNEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFTSSSSIEEVAASCNAVRFYQLYVFKKRDIAATLVQRAERNGFKALVLTADTPRLGRREADIKNKMITPPLKNLEGLLSTKVSSDTGSNFEADAKRPWMLL
MNYSDLCMQYVASGIDLLEKLINVHVCRFQMAAEPVNLNEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFTSSSSIEEVAASCNAVRFYQLYVFKKRDIAATLVQRAERNGFKALVLTADTPRLGRREADIKNKMITPPLKNLEGLLSTKVSSDTGSNFEADAKRPWMLL
MNYSDLCMQYVASGIDLLEKLINVHVCRFQMAAEPVNLNEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFTSSSSIEEVAASCNAVRFYQLYVFKKRDIAATLVQRAERNGFKALVLTADTPRLGRREADIKNKMITPPLKNLEGLLSTKVSSDTGSNFEADAKRPWMLL
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MNYSDLCMQYVASGIDLLEKLINVHVCRFQMAAEPVNLNEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFTSSSSIEEVAASCNAVRFYQLYVFKKRDIAATLVQRAERNGFKALVLTADTPRLGRREADIKNKMITPPLKNLEGLLSTKVSSDTGSNFEADAKRPWMLL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query239 2.2.26 [Sep-21-2011]
Q9LJH5 363 Peroxisomal (S)-2-hydroxy yes no 0.841 0.553 0.685 3e-79
Q24JJ8 363 Peroxisomal (S)-2-hydroxy no no 0.841 0.553 0.696 2e-77
Q8H3I4 366 Peroxisomal (S)-2-hydroxy yes no 0.815 0.532 0.673 3e-74
B8B8K5 366 Peroxisomal (S)-2-hydroxy N/A no 0.815 0.532 0.668 1e-73
Q6YT73 369 Peroxisomal (S)-2-hydroxy no no 0.807 0.523 0.595 1e-60
B8B7C5 369 Peroxisomal (S)-2-hydroxy N/A no 0.807 0.523 0.595 1e-60
Q10CE4 369 Peroxisomal (S)-2-hydroxy no no 0.765 0.495 0.618 2e-60
B8AKX6 369 Peroxisomal (S)-2-hydroxy N/A no 0.765 0.495 0.618 2e-60
P05414 369 Peroxisomal (S)-2-hydroxy N/A no 0.803 0.520 0.593 3e-60
O49506 368 Peroxisomal (S)-2-hydroxy no no 0.803 0.521 0.558 1e-59
>sp|Q9LJH5|GLO4_ARATH Peroxisomal (S)-2-hydroxy-acid oxidase GLO4 OS=Arabidopsis thaliana GN=GLO4 PE=2 SV=1 Back     alignment and function desciption
 Score =  294 bits (753), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 142/207 (68%), Positives = 175/207 (84%), Gaps = 6/207 (2%)

Query: 36  VNLNEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTT 95
           VN++EFQELA+ ALPKMYYDFY GGAED+HTL ENV+AF RI FRPR+LVDVS ID+ST+
Sbjct: 5   VNVDEFQELAKQALPKMYYDFYNGGAEDQHTLNENVQAFRRIMFRPRVLVDVSNIDMSTS 64

Query: 96  ILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFTSSSSIEEVAASCNAV 155
           +L Y ISAPI+IAPTA+HKLA+P+GE+ATA+AAA+CNTIM++SF S+ +IEEVA+SCNAV
Sbjct: 65  MLGYPISAPIMIAPTAMHKLAHPKGEIATAKAAAACNTIMIVSFMSTCTIEEVASSCNAV 124

Query: 156 RFYQLYVFKKRDIAATLVQRAERNGFKALVLTADTPRLGRREADIKNKMITPPLKNLEGL 215
           RF Q+YV+K+RD+ A +V+RAE+ GFKA+VLT D PRLGRREADIKNKMI+P LKN EGL
Sbjct: 125 RFLQIYVYKRRDVTAQIVKRAEKAGFKAIVLTVDVPRLGRREADIKNKMISPQLKNFEGL 184

Query: 216 LSTKVSSDTGSNFEA------DAKRPW 236
           +ST+V  + GS  EA      DA   W
Sbjct: 185 VSTEVRPNEGSGVEAFASSAFDASLSW 211

Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: 1EC: .EC: 3EC: .EC: 1EC: 5
>sp|Q24JJ8|GLO3_ARATH Peroxisomal (S)-2-hydroxy-acid oxidase GLO3 OS=Arabidopsis thaliana GN=GLO3 PE=2 SV=1 Back     alignment and function description
>sp|Q8H3I4|GLO4_ORYSJ Peroxisomal (S)-2-hydroxy-acid oxidase GLO4 OS=Oryza sativa subsp. japonica GN=GLO4 PE=2 SV=2 Back     alignment and function description
>sp|B8B8K5|GLO4_ORYSI Peroxisomal (S)-2-hydroxy-acid oxidase GLO4 OS=Oryza sativa subsp. indica GN=GLO4 PE=2 SV=2 Back     alignment and function description
>sp|Q6YT73|GLO5_ORYSJ Peroxisomal (S)-2-hydroxy-acid oxidase GLO5 OS=Oryza sativa subsp. japonica GN=GLO5 PE=2 SV=1 Back     alignment and function description
>sp|B8B7C5|GLO5_ORYSI Peroxisomal (S)-2-hydroxy-acid oxidase GLO5 OS=Oryza sativa subsp. indica GN=GLO5 PE=3 SV=1 Back     alignment and function description
>sp|Q10CE4|GLO1_ORYSJ Peroxisomal (S)-2-hydroxy-acid oxidase GLO1 OS=Oryza sativa subsp. japonica GN=GLO1 PE=1 SV=1 Back     alignment and function description
>sp|B8AKX6|GLO1_ORYSI Peroxisomal (S)-2-hydroxy-acid oxidase GLO1 OS=Oryza sativa subsp. indica GN=GLO1 PE=3 SV=1 Back     alignment and function description
>sp|P05414|GOX_SPIOL Peroxisomal (S)-2-hydroxy-acid oxidase OS=Spinacia oleracea PE=1 SV=1 Back     alignment and function description
>sp|O49506|GLO5_ARATH Peroxisomal (S)-2-hydroxy-acid oxidase GLO5 OS=Arabidopsis thaliana GN=GLO5 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query239
255576607 364 (S)-2-hydroxy-acid oxidase, putative [Ri 0.849 0.557 0.788 1e-89
147789144 364 hypothetical protein VITISV_031318 [Viti 0.861 0.565 0.754 1e-88
225442054 364 PREDICTED: peroxisomal (S)-2-hydroxy-aci 0.861 0.565 0.75 4e-88
225442052 364 PREDICTED: peroxisomal (S)-2-hydroxy-aci 0.861 0.565 0.75 8e-87
147789143 364 hypothetical protein VITISV_031317 [Viti 0.861 0.565 0.75 2e-86
255576595 364 (S)-2-hydroxy-acid oxidase, putative [Ri 0.845 0.554 0.772 2e-84
449453385 364 PREDICTED: peroxisomal (S)-2-hydroxy-aci 0.861 0.565 0.693 3e-81
449516252227 PREDICTED: peroxisomal (S)-2-hydroxy-aci 0.845 0.889 0.717 8e-81
224074053 364 predicted protein [Populus trichocarpa] 0.845 0.554 0.762 8e-81
224074051 370 predicted protein [Populus trichocarpa] 0.845 0.545 0.735 5e-79
>gi|255576607|ref|XP_002529194.1| (S)-2-hydroxy-acid oxidase, putative [Ricinus communis] gi|223531372|gb|EEF33208.1| (S)-2-hydroxy-acid oxidase, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  335 bits (858), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 160/203 (78%), Positives = 185/203 (91%)

Query: 31  MAAEPVNLNEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRI 90
           M +EPVN+NEFQELA+ ALPKMYYD+YAGGAED+HTLKENVEAFHRIT RPRILVDVS+I
Sbjct: 1   MGSEPVNVNEFQELAKQALPKMYYDYYAGGAEDQHTLKENVEAFHRITIRPRILVDVSQI 60

Query: 91  DLSTTILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFTSSSSIEEVAA 150
           D+STTIL YKISAPI+IAPTA+HKLANPEGE ATARAAA CNTIMVLS+ SS ++EEVA+
Sbjct: 61  DMSTTILGYKISAPIMIAPTAMHKLANPEGEAATARAAAVCNTIMVLSYMSSCTVEEVAS 120

Query: 151 SCNAVRFYQLYVFKKRDIAATLVQRAERNGFKALVLTADTPRLGRREADIKNKMITPPLK 210
           SCNA+RFYQLYV+K+RDI+A LVQRAERNG+KA+VLT D PRLGRREADI+NKM+ P LK
Sbjct: 121 SCNAIRFYQLYVYKRRDISAQLVQRAERNGYKAIVLTVDAPRLGRREADIRNKMVAPQLK 180

Query: 211 NLEGLLSTKVSSDTGSNFEADAK 233
           N EGL+ST+V+S+ GSN E  AK
Sbjct: 181 NFEGLISTEVASNEGSNLEVFAK 203

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|147789144|emb|CAN60339.1| hypothetical protein VITISV_031318 [Vitis vinifera] Back     alignment and taxonomy information
>gi|225442054|ref|XP_002270101.1| PREDICTED: peroxisomal (S)-2-hydroxy-acid oxidase GLO4 [Vitis vinifera] gi|297742968|emb|CBI35835.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|225442052|ref|XP_002270074.1| PREDICTED: peroxisomal (S)-2-hydroxy-acid oxidase GLO4 [Vitis vinifera] gi|297742966|emb|CBI35833.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|147789143|emb|CAN60338.1| hypothetical protein VITISV_031317 [Vitis vinifera] Back     alignment and taxonomy information
>gi|255576595|ref|XP_002529188.1| (S)-2-hydroxy-acid oxidase, putative [Ricinus communis] gi|223531366|gb|EEF33202.1| (S)-2-hydroxy-acid oxidase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|449453385|ref|XP_004144438.1| PREDICTED: peroxisomal (S)-2-hydroxy-acid oxidase GLO4-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449516252|ref|XP_004165161.1| PREDICTED: peroxisomal (S)-2-hydroxy-acid oxidase GLO4-like, partial [Cucumis sativus] Back     alignment and taxonomy information
>gi|224074053|ref|XP_002304232.1| predicted protein [Populus trichocarpa] gi|222841664|gb|EEE79211.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224074051|ref|XP_002304231.1| predicted protein [Populus trichocarpa] gi|222841663|gb|EEE79210.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query239
TAIR|locus:2087487 363 HAOX1 [Arabidopsis thaliana (t 0.824 0.542 0.710 2.8e-73
TAIR|locus:2087517 363 HAOX2 [Arabidopsis thaliana (t 0.832 0.548 0.703 3.2e-72
UNIPROTKB|Q8H3I4 366 GLO4 "Peroxisomal (S)-2-hydrox 0.832 0.543 0.665 1.3e-66
UNIPROTKB|B8B8K5 366 GLO4 "Peroxisomal (S)-2-hydrox 0.832 0.543 0.66 5.8e-66
UNIPROTKB|B8AKX6 369 GLO1 "Peroxisomal (S)-2-hydrox 0.803 0.520 0.598 2.2e-57
UNIPROTKB|Q10CE4 369 GLO1 "Peroxisomal (S)-2-hydrox 0.803 0.520 0.598 2.2e-57
UNIPROTKB|B8B7C5 369 GLO5 "Peroxisomal (S)-2-hydrox 0.803 0.520 0.598 2.8e-57
UNIPROTKB|Q6YT73 369 GLO5 "Peroxisomal (S)-2-hydrox 0.803 0.520 0.598 2.8e-57
TAIR|locus:2091642 367 GOX1 "glycolate oxidase 1" [Ar 0.803 0.523 0.573 1.8e-55
UNIPROTKB|B8AUI3 367 GLO3 "Peroxisomal (S)-2-hydrox 0.790 0.514 0.587 7.8e-55
TAIR|locus:2087487 HAOX1 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 740 (265.6 bits), Expect = 2.8e-73, P = 2.8e-73
 Identities = 140/197 (71%), Positives = 173/197 (87%)

Query:    36 VNLNEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTT 95
             VN++EFQELA+ ALPKMYYDFY GGAED+HTL ENV+AF RI FRPR+LVDVS ID+ST+
Sbjct:     5 VNVDEFQELAKQALPKMYYDFYNGGAEDQHTLNENVQAFRRIMFRPRVLVDVSNIDMSTS 64

Query:    96 ILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFTSSSSIEEVAASCNAV 155
             +L Y ISAPI+IAPTA+HKLA+P+GE+ATA+AAA+CNTIM++SF S+ +IEEVA+SCNAV
Sbjct:    65 MLGYPISAPIMIAPTAMHKLAHPKGEIATAKAAAACNTIMIVSFMSTCTIEEVASSCNAV 124

Query:   156 RFYQLYVFKKRDIAATLVQRAERNGFKALVLTADTPRLGRREADIKNKMITPPLKNLEGL 215
             RF Q+YV+K+RD+ A +V+RAE+ GFKA+VLT D PRLGRREADIKNKMI+P LKN EGL
Sbjct:   125 RFLQIYVYKRRDVTAQIVKRAEKAGFKAIVLTVDVPRLGRREADIKNKMISPQLKNFEGL 184

Query:   216 LSTKVSSDTGSNFEADA 232
             +ST+V  + GS  EA A
Sbjct:   185 VSTEVRPNEGSGVEAFA 201
GO:0003824 "catalytic activity" evidence=IEA
GO:0005737 "cytoplasm" evidence=ISM
GO:0008891 "glycolate oxidase activity" evidence=ISS
GO:0010181 "FMN binding" evidence=IEA
GO:0016491 "oxidoreductase activity" evidence=IEA
GO:0042742 "defense response to bacterium" evidence=IMP
GO:0050665 "hydrogen peroxide biosynthetic process" evidence=IMP
TAIR|locus:2087517 HAOX2 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q8H3I4 GLO4 "Peroxisomal (S)-2-hydroxy-acid oxidase GLO4" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
UNIPROTKB|B8B8K5 GLO4 "Peroxisomal (S)-2-hydroxy-acid oxidase GLO4" [Oryza sativa Indica Group (taxid:39946)] Back     alignment and assigned GO terms
UNIPROTKB|B8AKX6 GLO1 "Peroxisomal (S)-2-hydroxy-acid oxidase GLO1" [Oryza sativa Indica Group (taxid:39946)] Back     alignment and assigned GO terms
UNIPROTKB|Q10CE4 GLO1 "Peroxisomal (S)-2-hydroxy-acid oxidase GLO1" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
UNIPROTKB|B8B7C5 GLO5 "Peroxisomal (S)-2-hydroxy-acid oxidase GLO5" [Oryza sativa Indica Group (taxid:39946)] Back     alignment and assigned GO terms
UNIPROTKB|Q6YT73 GLO5 "Peroxisomal (S)-2-hydroxy-acid oxidase GLO5" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
TAIR|locus:2091642 GOX1 "glycolate oxidase 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|B8AUI3 GLO3 "Peroxisomal (S)-2-hydroxy-acid oxidase GLO3" [Oryza sativa Indica Group (taxid:39946)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query239
PLN02535 364 PLN02535, PLN02535, glycolate oxidase 1e-136
cd02809299 cd02809, alpha_hydroxyacid_oxid_FMN, Family of hom 2e-75
pfam01070 302 pfam01070, FMN_dh, FMN-dependent dehydrogenase 3e-74
PLN02493 367 PLN02493, PLN02493, probable peroxisomal (S)-2-hyd 1e-73
cd02922 344 cd02922, FCB2_FMN, Flavocytochrome b2 (FCB2) FMN-b 7e-65
PLN02979 366 PLN02979, PLN02979, glycolate oxidase 9e-58
cd03332 383 cd03332, LMO_FMN, L-Lactate 2-monooxygenase (LMO) 8e-52
COG1304 360 COG1304, idi, Isopentenyl diphosphate isomerase (B 3e-51
cd04737 351 cd04737, LOX_like_FMN, L-Lactate oxidase (LOX) FMN 6e-51
cd04736 361 cd04736, MDH_FMN, Mandelate dehydrogenase (MDH)-li 9e-46
TIGR02708 367 TIGR02708, L_lactate_ox, L-lactate oxidase 9e-39
PRK11197 381 PRK11197, lldD, L-lactate dehydrogenase; Provision 2e-33
TIGR03966 385 TIGR03966, actino_HemFlav, heme/flavin dehydrogena 3e-32
PRK05437 352 PRK05437, PRK05437, isopentenyl pyrophosphate isom 4e-06
TIGR02151 333 TIGR02151, IPP_isom_2, isopentenyl-diphosphate del 6e-05
cd02811 326 cd02811, IDI-2_FMN, Isopentenyl-diphosphate:dimeth 6e-05
>gnl|CDD|215294 PLN02535, PLN02535, glycolate oxidase Back     alignment and domain information 
 Score =  385 bits (991), Expect = e-136
 Identities = 161/204 (78%), Positives = 184/204 (90%)

Query: 31  MAAEPVNLNEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRI 90
           MA E VN+NEFQELA+ ALPKMYYDFYAGGAED+HTLKENV+AF RITFRPR+LVDVS+I
Sbjct: 1   MADEIVNVNEFQELAKQALPKMYYDFYAGGAEDQHTLKENVQAFRRITFRPRVLVDVSKI 60

Query: 91  DLSTTILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFTSSSSIEEVAA 150
           D+STTIL Y ISAPI+IAPTA+HKLA+PEGE+ATARAAA+CNTIMVLSF +S ++EEVA+
Sbjct: 61  DMSTTILGYTISAPIMIAPTAMHKLAHPEGEIATARAAAACNTIMVLSFMASCTVEEVAS 120

Query: 151 SCNAVRFYQLYVFKKRDIAATLVQRAERNGFKALVLTADTPRLGRREADIKNKMITPPLK 210
           SCNAVRF QLYV+K+RDIAA LVQRAE+NG+KA+VLTAD PRLGRREADIKNKMI+P LK
Sbjct: 121 SCNAVRFLQLYVYKRRDIAAQLVQRAEKNGYKAIVLTADVPRLGRREADIKNKMISPQLK 180

Query: 211 NLEGLLSTKVSSDTGSNFEADAKR 234
           N EGLLST+V SD GS  EA A  
Sbjct: 181 NFEGLLSTEVVSDKGSGLEAFASE 204

Length = 364
>gnl|CDD|239203 cd02809, alpha_hydroxyacid_oxid_FMN, Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes Back     alignment and domain information
>gnl|CDD|216281 pfam01070, FMN_dh, FMN-dependent dehydrogenase Back     alignment and domain information
>gnl|CDD|166134 PLN02493, PLN02493, probable peroxisomal (S)-2-hydroxy-acid oxidase Back     alignment and domain information
>gnl|CDD|239238 cd02922, FCB2_FMN, Flavocytochrome b2 (FCB2) FMN-binding domain Back     alignment and domain information
>gnl|CDD|166620 PLN02979, PLN02979, glycolate oxidase Back     alignment and domain information
>gnl|CDD|239448 cd03332, LMO_FMN, L-Lactate 2-monooxygenase (LMO) FMN-binding domain Back     alignment and domain information
>gnl|CDD|224223 COG1304, idi, Isopentenyl diphosphate isomerase (BS_ypgA, MTH48 and related proteins) [Coenzyme transport and metabolism] Back     alignment and domain information
>gnl|CDD|240088 cd04737, LOX_like_FMN, L-Lactate oxidase (LOX) FMN-binding domain Back     alignment and domain information
>gnl|CDD|240087 cd04736, MDH_FMN, Mandelate dehydrogenase (MDH)-like FMN-binding domain Back     alignment and domain information
>gnl|CDD|131755 TIGR02708, L_lactate_ox, L-lactate oxidase Back     alignment and domain information
>gnl|CDD|183033 PRK11197, lldD, L-lactate dehydrogenase; Provisional Back     alignment and domain information
>gnl|CDD|188481 TIGR03966, actino_HemFlav, heme/flavin dehydrogenase, mycofactocin system Back     alignment and domain information
>gnl|CDD|235465 PRK05437, PRK05437, isopentenyl pyrophosphate isomerase; Provisional Back     alignment and domain information
>gnl|CDD|233750 TIGR02151, IPP_isom_2, isopentenyl-diphosphate delta-isomerase, type 2 Back     alignment and domain information
>gnl|CDD|239205 cd02811, IDI-2_FMN, Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 239
KOG0538 363 consensus Glycolate oxidase [Energy production and 100.0
PLN02493 367 probable peroxisomal (S)-2-hydroxy-acid oxidase 100.0
PLN02535 364 glycolate oxidase 100.0
PRK11197 381 lldD L-lactate dehydrogenase; Provisional 100.0
cd04736 361 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-bin 100.0
TIGR02708 367 L_lactate_ox L-lactate oxidase. Members of this pr 100.0
cd03332 383 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-bindin 100.0
cd04737 351 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding d 100.0
cd02922 344 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding dom 100.0
PF01070 356 FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR 100.0
PLN02979 366 glycolate oxidase 100.0
COG1304 360 idi Isopentenyl diphosphate isomerase (BS_ypgA, MT 100.0
cd02809299 alpha_hydroxyacid_oxid_FMN Family of homologous FM 100.0
cd02811 326 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl di 99.33
PRK05437 352 isopentenyl pyrophosphate isomerase; Provisional 99.25
TIGR02151 333 IPP_isom_2 isopentenyl-diphosphate delta-isomerase 99.15
PRK05458 326 guanosine 5'-monophosphate oxidoreductase; Provisi 98.27
TIGR01306 321 GMP_reduct_2 guanosine monophosphate reductase, ba 98.2
PRK08649 368 inosine 5-monophosphate dehydrogenase; Validated 97.14
cd00381 325 IMPDH IMPDH: The catalytic domain of the inosine m 97.02
TIGR01304 369 IMP_DH_rel_2 IMP dehydrogenase family protein. Thi 94.84
PRK06843 404 inosine 5-monophosphate dehydrogenase; Validated 93.85
PF00478 352 IMPDH: IMP dehydrogenase / GMP reductase domain; I 92.43
TIGR01305 343 GMP_reduct_1 guanosine monophosphate reductase, eu 91.54
TIGR00737 319 nifR3_yhdG putative TIM-barrel protein, nifR3 fami 90.76
cd04739 325 DHOD_like Dihydroorotate dehydrogenase (DHOD) like 89.61
PLN02495 385 oxidoreductase, acting on the CH-CH group of donor 89.22
PRK05096 346 guanosine 5'-monophosphate oxidoreductase; Provisi 88.88
PRK07259 301 dihydroorotate dehydrogenase 1B; Reviewed 88.73
cd04738 327 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) cl 88.71
cd02940 299 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FM 87.65
PRK05286 344 dihydroorotate dehydrogenase 2; Reviewed 86.15
cd04740 296 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) c 85.52
cd02810 289 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) 84.83
TIGR01037 300 pyrD_sub1_fam dihydroorotate dehydrogenase (subfam 83.96
PTZ00314 495 inosine-5'-monophosphate dehydrogenase; Provisiona 82.16
cd04730236 NPD_like 2-Nitropropane dioxygenase (NPD), one of 81.25
TIGR03151 307 enACPred_II putative enoyl-(acyl-carrier-protein) 80.4
>KOG0538 consensus Glycolate oxidase [Energy production and conversion] Back     alignment and domain information 
Probab=100.00  E-value=3.4e-62  Score=439.73  Aligned_cols=201  Identities=58%  Similarity=0.893  Sum_probs=192.4

Q ss_pred             CCCHHHHHHHHHHhCChhhhhhhcCCccchhcHHHHHHHhcccccccccccCCCCCCcceeecCcccCcceEeccccchh
Q 026410           35 PVNLNEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTALHK  114 (239)
Q Consensus        35 ~~~l~D~e~~Ar~~Lp~~~~~Y~~gGa~de~T~~~N~~af~ri~l~PRvL~dv~~~Dtst~llG~~~s~Pi~iaP~g~~~  114 (239)
                      ++|+.|||+.|+++|||.+||||.|||+|++|+++|++||+||+|+||+|+||+.+|+||++||+++++||+|||||+|+
T Consensus         1 lv~~~dfe~~A~~~L~K~a~dyy~sgA~d~~Tl~~N~~AF~ri~~rPr~L~dVs~iD~sTtvlG~~i~~Pi~iapTa~qk   80 (363)
T KOG0538|consen    1 LVNVDDFEALAKQQLPKMAYDYYESGAEDQETLDENINAFRRILFRPRILRDVSKIDTSTTVLGQKISAPIMIAPTAMQK   80 (363)
T ss_pred             CccHHHHHHHHHHhhhHHHHHHHhcCCcchhhHHHHHHHHHhhhccchhheecccccccceeccccccceeEEcchHHHh
Confidence            47899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCcHHHHHHHHHHhhcCCceeecCCCCCcHHHHHhhcC-CceeEEEEeecCHHHHHHHHHHHHHcCCcEEEEeecCCCC
Q 026410          115 LANPEGEVATARAAASCNTIMVLSFTSSSSIEEVAASCN-AVRFYQLYVFKKRDIAATLVQRAERNGFKALVLTADTPRL  193 (239)
Q Consensus       115 l~hp~gE~alArAA~~~gi~~~lSs~ss~sleeia~~~~-~~~wfQLy~~~dr~~~~~li~rAe~aG~~AlvvTVD~p~~  193 (239)
                      |+|||||.++||||.++|++|++||++++|+|||++++| +++|||||+++||+++++|++|||++|||||+||||+|++
T Consensus        81 ma~pdGE~~taraa~~~~~~~i~Ss~at~S~EdI~~aap~~~rwfQLYvykdr~It~~Lv~raEk~GfkAlvlTvDtP~l  160 (363)
T KOG0538|consen   81 MAHPDGELATARAAQAAGTIMILSSWATCSVEDIASAAPPGIRWFQLYVYKDRDITEQLVKRAEKAGFKALVLTVDTPRL  160 (363)
T ss_pred             ccCCcccHHHHHHHHhcCCcEEEechhcCCHHHHHhhCCCCcEEEEEEecCchHHHHHHHHHHHHcCceEEEEEeccccc
Confidence            999999999999999999999999999999999999985 8999999999999999999999999999999999999999


Q ss_pred             CCchhHhhcCCCCC---CCCCcccccccccCCCCCCchhhhhccc
Q 026410          194 GRREADIKNKMITP---PLKNLEGLLSTKVSSDTGSNFEADAKRP  235 (239)
Q Consensus       194 g~Re~d~r~~f~~p---~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (239)
                      |+|+.|+||+|.+|   +++||++.....++..+++|++.|++..
T Consensus       161 G~R~~D~~n~f~lp~~l~lknfe~~~~~~v~~~~~sg~~~~~~~~  205 (363)
T KOG0538|consen  161 GRRESDIKNKFSLPKNLTLKNFEGLKLTEVEEAGDSGLAAYVSSQ  205 (363)
T ss_pred             cCchhhhhhcccCCcccccccccccccccCCcccchhhhhhhhcC
Confidence            99999999999999   6899998877666666888999887643

>PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase Back     alignment and domain information
>PLN02535 glycolate oxidase Back     alignment and domain information
>PRK11197 lldD L-lactate dehydrogenase; Provisional Back     alignment and domain information
>cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain Back     alignment and domain information
>TIGR02708 L_lactate_ox L-lactate oxidase Back     alignment and domain information
>cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain Back     alignment and domain information
>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain Back     alignment and domain information
>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain Back     alignment and domain information
>PF01070 FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR000262 A number of oxidoreductases that act on alpha-hydroxy acids and which are FMN-containing flavoproteins have been shown [, , ] to be structurally related Back     alignment and domain information
>PLN02979 glycolate oxidase Back     alignment and domain information
>COG1304 idi Isopentenyl diphosphate isomerase (BS_ypgA, MTH48 and related proteins) [Coenzyme transport and metabolism] Back     alignment and domain information
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes Back     alignment and domain information
>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain Back     alignment and domain information
>PRK05437 isopentenyl pyrophosphate isomerase; Provisional Back     alignment and domain information
>TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2 Back     alignment and domain information
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional Back     alignment and domain information
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial Back     alignment and domain information
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated Back     alignment and domain information
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase Back     alignment and domain information
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein Back     alignment and domain information
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated Back     alignment and domain information
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase Back     alignment and domain information
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic Back     alignment and domain information
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family Back     alignment and domain information
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins Back     alignment and domain information
>PLN02495 oxidoreductase, acting on the CH-CH group of donors Back     alignment and domain information
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional Back     alignment and domain information
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed Back     alignment and domain information
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2 Back     alignment and domain information
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain Back     alignment and domain information
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed Back     alignment and domain information
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain Back     alignment and domain information
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain Back     alignment and domain information
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein Back     alignment and domain information
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional Back     alignment and domain information
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites Back     alignment and domain information
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query239
1gyl_A 369 Involvement Of Tyr24 And Trp108 In Substrate Bindin 1e-61
1al7_A 359 Three-Dimensional Structures Of Glycolate Oxidase W 2e-61
1gox_A 370 Refined Structure Of Spinach Glycolate Oxidase At 2 3e-61
2nzl_A 392 Crystal Structure Of Human Hydroxyacid Oxidase 1 Le 6e-42
2rdt_A 387 Crystal Structure Of Human Glycolate Oxidase (Go) I 6e-42
2w0u_A 370 Crystal Structure Of Human Glycolate Oxidase In Com 1e-41
1tb3_A 352 Crystal Structure Analysis Of Recombinant Rat Kidne 2e-36
2a7n_A 380 Crystal Structure Of The G81a Mutant Of The Active 2e-36
3sgz_A 352 High Resolution Crystal Structure Of Rat Long Chain 2e-36
1huv_A 380 Crystal Structure Of A Soluble Mutant Of The Membra 4e-36
1ldc_A 511 X-Ray Structure Of Two Complexes Of The Y143f Flavo 3e-32
2oz0_A 511 Mechanistic And Structural Studies Of H373q Flavocy 6e-32
1ltd_A 506 The 2.6 Angstroms Refined Structure Of The Escheric 6e-32
1kbj_A 412 Crystallographic Study Of The Recombinant Flavin-Bi 6e-32
1fcb_A 511 Molecular Structure Of Flavocytochrome B2 At 2.4 An 7e-32
1qcw_A 410 Flavocytochrome B2, Arg289lys Mutant Length = 410 1e-31
1sze_A 511 L230a Mutant Flavocytochrome B2 With Benzoylformate 2e-31
1szf_A 511 A198g:l230a Mutant Flavocytochrome B2 With Pyruvate 3e-31
2j6x_A 374 The Crystal Structure Of Lactate Oxidase Length = 3 2e-26
2nli_A 368 Crystal Structure Of The Complex Between L-Lactate 2e-26
2du2_A 374 Crystal Structure Analysis Of The L-Lactate Oxidase 2e-26
2cdh_0226 Architecture Of The Thermomyces Lanuginosus Fungal 2e-25
>pdb|1GYL|A Chain A, Involvement Of Tyr24 And Trp108 In Substrate Binding And Substrate Specificity Of Glycolate Oxidase Length = 369 Back     alignment and structure 
Iteration: 1

 Score =  233 bits (593), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 118/197 (59%), Positives = 154/197 (78%), Gaps = 5/197 (2%)
Query: 34  EPVNLNEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLS 93
           E  N+NE++ +A+  LPKM YDFYA GAED+ TL EN  AF RI FRPRIL+DV+ ID++
Sbjct: 2   EITNVNEYEAIAKQKLPKMVYDFYASGAEDQWTLAENRNAFSRILFRPRILIDVTNIDMT 61
Query: 94  TTILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFTSSSSIEEVAASCN 153
           TTIL +KIS PI+IAPTA+ K+A+PEGE ATARAA++  TIM LS  ++SS+EEVA++  
Sbjct: 62  TTILGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWATSSVEEVASTGP 121
Query: 154 AVRFYQLYVFKKRDIAATLVQRAERNGFKALVLTADTPRLGRREADIKNKMITPP---LK 210
            +RF+QLYV+K R++ A LV+RAER GFKA+ LT DTPRLGRREADIKN+ + PP   LK
Sbjct: 122 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPFLTLK 181
Query: 211 NLEGLLSTKV--SSDTG 225
           N EG+   K+  ++D+G
Sbjct: 182 NFEGIDLGKMDKANDSG 198
>pdb|1AL7|A Chain A, Three-Dimensional Structures Of Glycolate Oxidase With Bound Active- Site Inhibitors Length = 359 Back     alignment and structure
>pdb|1GOX|A Chain A, Refined Structure Of Spinach Glycolate Oxidase At 2 Angstroms Resolution Length = 370 Back     alignment and structure
>pdb|2NZL|A Chain A, Crystal Structure Of Human Hydroxyacid Oxidase 1 Length = 392 Back     alignment and structure
>pdb|2RDT|A Chain A, Crystal Structure Of Human Glycolate Oxidase (Go) In Complex With Cdst Length = 387 Back     alignment and structure
>pdb|2W0U|A Chain A, Crystal Structure Of Human Glycolate Oxidase In Complex With The Inhibitor 5-[(4-Chlorophenyl)sulfanyl]- 1,2,3-Thiadiazole-4-Carboxylate. Length = 370 Back     alignment and structure
>pdb|1TB3|A Chain A, Crystal Structure Analysis Of Recombinant Rat Kidney Long- Chain Hydroxy Acid Oxidase Length = 352 Back     alignment and structure
>pdb|2A7N|A Chain A, Crystal Structure Of The G81a Mutant Of The Active Chimera Of (S)- Mandelate Dehydrogenase Length = 380 Back     alignment and structure
>pdb|3SGZ|A Chain A, High Resolution Crystal Structure Of Rat Long Chain Hydroxy Acid Oxidase In Complex With The Inhibitor 4-Carboxy-5-[(4-Chiorophenyl) Sulfanyl]-1, 2, 3-Thiadiazole. Length = 352 Back     alignment and structure
>pdb|1HUV|A Chain A, Crystal Structure Of A Soluble Mutant Of The Membrane-Associated (S)- Mandelate Dehydrogenase From Pseudomonas Putida At 2.15a Resolution Length = 380 Back     alignment and structure
>pdb|1LDC|A Chain A, X-Ray Structure Of Two Complexes Of The Y143f Flavocytochrome B2 Mutant Crystallized In The Presence Of Lactate Or Phenyl-Lactate Length = 511 Back     alignment and structure
>pdb|2OZ0|A Chain A, Mechanistic And Structural Studies Of H373q Flavocytochrome B2: Effects Of Mutating The Active Site Base Length = 511 Back     alignment and structure
>pdb|1LTD|A Chain A, The 2.6 Angstroms Refined Structure Of The Escherichia Coli Recombinant Saccharomyces Cerevisiae Flavocytochrome B2-Sulphite Complex Length = 506 Back     alignment and structure
>pdb|1KBJ|A Chain A, Crystallographic Study Of The Recombinant Flavin-Binding Domain Of Baker's Yeast Flavocytochrome B2: Comparison With The Intact Wild- Type Enzyme Length = 412 Back     alignment and structure
>pdb|1FCB|A Chain A, Molecular Structure Of Flavocytochrome B2 At 2.4 Angstroms Resolution Length = 511 Back     alignment and structure
>pdb|1QCW|A Chain A, Flavocytochrome B2, Arg289lys Mutant Length = 410 Back     alignment and structure
>pdb|1SZE|A Chain A, L230a Mutant Flavocytochrome B2 With Benzoylformate Length = 511 Back     alignment and structure
>pdb|1SZF|A Chain A, A198g:l230a Mutant Flavocytochrome B2 With Pyruvate Bound Length = 511 Back     alignment and structure
>pdb|2J6X|A Chain A, The Crystal Structure Of Lactate Oxidase Length = 374 Back     alignment and structure
>pdb|2NLI|A Chain A, Crystal Structure Of The Complex Between L-Lactate Oxidase And A Substrate Analogue At 1.59 Angstrom Resolution Length = 368 Back     alignment and structure
>pdb|2DU2|A Chain A, Crystal Structure Analysis Of The L-Lactate Oxidase Length = 374 Back     alignment and structure
>pdb|2CDH|0 Chain 0, Architecture Of The Thermomyces Lanuginosus Fungal Fatty Acid Synthase At 5 Angstrom Resolution. Length = 226 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query239
1gox_A 370 (S)-2-hydroxy-acid oxidase, peroxisomal; oxidoredu 4e-98
3sgz_A 352 Hydroxyacid oxidase 2; flavoprotein, homology, INH 1e-95
2nzl_A 392 Hydroxyacid oxidase 1; HAOX1, glycolate oxidase, G 6e-95
1p4c_A 380 L(+)-mandelate dehydrogenase; TIM barrel, hydroxy 6e-95
2nli_A 368 Lactate oxidase; flavoenzyme, FMN, D-lactate, oxid 4e-93
1kbi_A 511 Cytochrome B2, L-LCR; flavocytochrome B2, electron 8e-86
3sr7_A 365 Isopentenyl-diphosphate delta-isomerase; isopenten 2e-38
1p0k_A 349 Isopentenyl-diphosphate delta-isomerase; terpene b 8e-28
3vkj_A 368 Isopentenyl-diphosphate delta-isomerase; type 2 is 4e-21
1vcf_A 332 Isopentenyl-diphosphate delta-isomerase; TIM barre 1e-16
>1gox_A (S)-2-hydroxy-acid oxidase, peroxisomal; oxidoreductase (oxygen(A)); HET: FMN; 2.00A {Spinacia oleracea} SCOP: c.1.4.1 PDB: 1gyl_A* 1al8_A* 1al7_A* 2cdh_0 Length = 370 Back     alignment and structure
 Score =  289 bits (743), Expect = 4e-98
 Identities = 116/200 (58%), Positives = 151/200 (75%), Gaps = 3/200 (1%)

Query: 34  EPVNLNEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLS 93
           E  N+NE++ +A+  LPKM YD+YA GAED+ TL EN  AF RI FRPRIL+DV+ ID++
Sbjct: 3   EITNVNEYEAIAKQKLPKMVYDYYASGAEDQWTLAENRNAFSRILFRPRILIDVTNIDMT 62

Query: 94  TTILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFTSSSSIEEVAASCN 153
           TTIL +KIS PI+IAPTA+ K+A+PEGE ATARAA++  TIM LS  ++SS+EEVA++  
Sbjct: 63  TTILGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWATSSVEEVASTGP 122

Query: 154 AVRFYQLYVFKKRDIAATLVQRAERNGFKALVLTADTPRLGRREADIKNKMITPP---LK 210
            +RF+QLYV+K R++ A LV+RAER GFKA+ LT DTPRLGRREADIKN+ + PP   LK
Sbjct: 123 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPFLTLK 182

Query: 211 NLEGLLSTKVSSDTGSNFEA 230
           N EG+   K+     S   +
Sbjct: 183 NFEGIDLGKMDKANDSGLSS 202
>3sgz_A Hydroxyacid oxidase 2; flavoprotein, homology, INH oxidoreductase-oxidoreductase inhibitor complex; HET: FMN HO6; 1.35A {Rattus norvegicus} PDB: 1tb3_A* Length = 352 Back     alignment and structure
>2nzl_A Hydroxyacid oxidase 1; HAOX1, glycolate oxidase, GOX, GOX1, structural genomics, structural genom consortium, SGC, oxidoreductase; HET: FMN; 1.35A {Homo sapiens} PDB: 2rdu_A* 2rdt_A* 2rdw_A* 2w0u_A* Length = 392 Back     alignment and structure
>1p4c_A L(+)-mandelate dehydrogenase; TIM barrel, hydroxy acid oxidizing enzyme, oxidoreductase; HET: FMN MES; 1.35A {Pseudomonas putida} SCOP: c.1.4.1 PDB: 1huv_A* 1p5b_A* 3giy_A* 2a7p_A* 2a85_A* 2a7n_A* Length = 380 Back     alignment and structure
>2nli_A Lactate oxidase; flavoenzyme, FMN, D-lactate, oxidoreducta; HET: FMN; 1.59A {Aerococcus viridans} PDB: 2zfa_A* 2du2_A* 2e77_A* 2j6x_A* Length = 368 Back     alignment and structure
>1kbi_A Cytochrome B2, L-LCR; flavocytochrome B2, electron transfer, oxidoreductase; HET: HEM FMN; 2.30A {Saccharomyces cerevisiae} SCOP: c.1.4.1 d.120.1.1 PDB: 1fcb_A* 1lco_A* 1ldc_A* 1sze_A* 2oz0_A* 1szf_A* 1szg_A* 1ltd_A* 1kbj_A* 1qcw_A* 3ks0_A* Length = 511 Back     alignment and structure
>3sr7_A Isopentenyl-diphosphate delta-isomerase; isopentenyl pyrophosphate isomerase, TIM-barrel; 2.04A {Streptococcus mutans} Length = 365 Back     alignment and structure
>1p0k_A Isopentenyl-diphosphate delta-isomerase; terpene biosynthesis, dimethylallyl diphosphate, flavoprotein; 1.90A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1p0n_A* Length = 349 Back     alignment and structure
>3vkj_A Isopentenyl-diphosphate delta-isomerase; type 2 isopentenyl diphosphate isomerase; HET: FNR; 1.70A {Sulfolobus shibatae} PDB: 2zrv_A* 2zrw_A* 2zrx_A* 2zry_A* 2zrz_A* 3b03_A* 3b04_A* 3b05_A* 3b06_A* 2zru_A* Length = 368 Back     alignment and structure
>1vcf_A Isopentenyl-diphosphate delta-isomerase; TIM barrel, structural genomics, riken structural genomics/P initiative, RSGI; HET: FMN; 2.60A {Thermus thermophilus} SCOP: c.1.4.1 PDB: 1vcg_A* 3dh7_A* Length = 332 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query239
3sgz_A 352 Hydroxyacid oxidase 2; flavoprotein, homology, INH 100.0
2nzl_A 392 Hydroxyacid oxidase 1; HAOX1, glycolate oxidase, G 100.0
2nli_A 368 Lactate oxidase; flavoenzyme, FMN, D-lactate, oxid 100.0
1gox_A 370 (S)-2-hydroxy-acid oxidase, peroxisomal; oxidoredu 100.0
1p4c_A 380 L(+)-mandelate dehydrogenase; TIM barrel, hydroxy 100.0
1kbi_A 511 Cytochrome B2, L-LCR; flavocytochrome B2, electron 100.0
2qr6_A 393 IMP dehydrogenase/GMP reductase; NP_599840.1, G re 99.8
1vcf_A 332 Isopentenyl-diphosphate delta-isomerase; TIM barre 99.71
3r2g_A 361 Inosine 5'-monophosphate dehydrogenase; structural 99.55
3sr7_A 365 Isopentenyl-diphosphate delta-isomerase; isopenten 99.54
1p0k_A 349 Isopentenyl-diphosphate delta-isomerase; terpene b 99.53
3vkj_A 368 Isopentenyl-diphosphate delta-isomerase; type 2 is 99.3
1ypf_A 336 GMP reductase; GUAC, purines, pyrimidines, nucleos 99.14
1eep_A 404 Inosine 5'-monophosphate dehydrogenase; alpha-beta 98.97
2c6q_A 351 GMP reductase 2; TIM barrel, metal-binding, NADP, 98.91
1gte_A 1025 Dihydropyrimidine dehydrogenase; electron transfer 98.02
3khj_A 361 Inosine-5-monophosphate dehydrogenase; enzyme-inhi 97.4
1f76_A 336 Dihydroorotate dehydrogenase; monomer, alpha-beta- 97.27
4fo4_A 366 Inosine 5'-monophosphate dehydrogenase; structural 96.74
2e6f_A 314 Dihydroorotate dehydrogenase; chagas disease, pyri 96.72
1ep3_A 311 Dihydroorotate dehydrogenase B (PYRD subunit); het 96.53
1vhn_A 318 Putative flavin oxidoreducatase; structural genomi 96.03
1jub_A 311 Dihydroorotate dehydrogenase A; homodimer, alpha-b 95.66
2z6i_A 332 Trans-2-enoyl-ACP reductase II; fatty acid synthes 94.75
2gjl_A 328 Hypothetical protein PA1024; 2-nitropropane dioxyg 94.56
3tjx_A 354 Dihydroorotate dehydrogenase; PYRD, dhodh, lmdhodh 94.26
1wv2_A265 Thiazole moeity, thiazole biosynthesis protein THI 92.99
3b0p_A 350 TRNA-dihydrouridine synthase; TIM barrel, oxidored 92.11
3bw2_A 369 2-nitropropane dioxygenase; TIM barrel, oxidoreduc 90.73
1ea0_A 1479 Glutamate synthase [NADPH] large chain; oxidoreduc 90.5
3ffs_A 400 Inosine-5-monophosphate dehydrogenase; beta-alpha 88.72
3bo9_A 326 Putative nitroalkan dioxygenase; TM0800, structura 88.22
4ef8_A 354 Dihydroorotate dehydrogenase; phenyl isothiocyanat 87.38
1ofd_A 1520 Ferredoxin-dependent glutamate synthase 2; oxidore 83.94
3oix_A 345 Putative dihydroorotate dehydrogenase; dihydrooro 83.91
>3sgz_A Hydroxyacid oxidase 2; flavoprotein, homology, INH oxidoreductase-oxidoreductase inhibitor complex; HET: FMN HO6; 1.35A {Rattus norvegicus} PDB: 1tb3_A* Back     alignment and structure
Probab=100.00  E-value=2.4e-57  Score=419.81  Aligned_cols=179  Identities=45%  Similarity=0.639  Sum_probs=173.6

Q ss_pred             CCCHHHHHHHHHHhCChhhhhhhcCCccchhcHHHHHHHhcccccccccccCCCCCCcceeecCcccCcceEeccccchh
Q 026410           35 PVNLNEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTALHK  114 (239)
Q Consensus        35 ~~~l~D~e~~Ar~~Lp~~~~~Y~~gGa~de~T~~~N~~af~ri~l~PRvL~dv~~~Dtst~llG~~~s~Pi~iaP~g~~~  114 (239)
                      ++|++|||+.||++||+.+|+|++||++||.|+++|+++|++|+|+||+|+||+++||+|+|||+++++||+|||+|+++
T Consensus         2 ~~~~~d~~~~A~~~lp~~~~~Y~~~ga~~e~t~~~N~~af~~~~l~prvl~dv~~~d~~t~llG~~~~~P~~iaP~g~~~   81 (352)
T 3sgz_A            2 LVCLADFKAHAQKQLSKTSWDFIEGEADDGITYSENIAAFKRIRLRPRYLRDMSKVDTRTTIQGQEISAPICISPTAFHS   81 (352)
T ss_dssp             CCSHHHHHHHHHHTSCHHHHHHHHCCCTTCHHHHHHHHHHHTCCBCCCCSSCCSSCBCCEEETTEEESSSEEECCCSCGG
T ss_pred             CCCHHHHHHHHHHHCCHHHHHHHhcCCcchHHHHHHHHHHHhceeeccccCCCCCCCCceEECCcccCCcceechHHHHH
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCcHHHHHHHHHHhhcCCceeecCCCCCcHHHHHhhcC-CceeEEEEeecCHHHHHHHHHHHHHcCCcEEEEeecCCCC
Q 026410          115 LANPEGEVATARAAASCNTIMVLSFTSSSSIEEVAASCN-AVRFYQLYVFKKRDIAATLVQRAERNGFKALVLTADTPRL  193 (239)
Q Consensus       115 l~hp~gE~alArAA~~~gi~~~lSs~ss~sleeia~~~~-~~~wfQLy~~~dr~~~~~li~rAe~aG~~AlvvTVD~p~~  193 (239)
                      |+||+||.++||||+++||+|++|+++++|+|||+++.+ ++.|||||+++|++.++++|+|||++||+|||||||+|+.
T Consensus        82 l~~~~ge~~~araa~~~gi~~~lSt~ss~s~e~v~~~~~~~~~wfQlY~~~d~~~~~~l~~ra~~aG~~alvlTvD~p~~  161 (352)
T 3sgz_A           82 IAWPDGEKSTARAAQEANICYVISSYASYSLEDIVAAAPEGFRWFQLYMKSDWDFNKQMVQRAEALGFKALVITIDTPVL  161 (352)
T ss_dssp             GTCTTHHHHHHHHHHHHTCEEEECTTCSSCHHHHHHHSTTCEEEEECCCCSCHHHHHHHHHHHHHTTCCCEEEECSCSSC
T ss_pred             hcCccHHHHHHHHHHHcCCCeEeCCCCCCCHHHHHHhccCccceeccccCCCHHHHHHHHHHHHHcCCCEEEEEeCCCCC
Confidence            999999999999999999999999999999999999886 7899999999999999999999999999999999999999


Q ss_pred             CCchhHhhcCCCCC---CCCCcc
Q 026410          194 GRREADIKNKMITP---PLKNLE  213 (239)
Q Consensus       194 g~Re~d~r~~f~~p---~~~~~~  213 (239)
                      |+||+|+||+|.+|   +++++.
T Consensus       162 g~R~~d~r~~~~~p~~~~~~~~~  184 (352)
T 3sgz_A          162 GNRRRDKRNQLNLEANILKAALR  184 (352)
T ss_dssp             CCCHHHHHHHHHSCHHHHTTCC-
T ss_pred             CcchhhhhcCCCCCcccchhhhc
Confidence            99999999999998   556654
>2nzl_A Hydroxyacid oxidase 1; HAOX1, glycolate oxidase, GOX, GOX1, structural genomics, structural genom consortium, SGC, oxidoreductase; HET: FMN; 1.35A {Homo sapiens} PDB: 2rdu_A* 2rdt_A* 2rdw_A* 2w0u_A* Back     alignment and structure
>2nli_A Lactate oxidase; flavoenzyme, FMN, D-lactate, oxidoreducta; HET: FMN; 1.59A {Aerococcus viridans} PDB: 2zfa_A* 2du2_A* 2e77_A* 2j6x_A* Back     alignment and structure
>1gox_A (S)-2-hydroxy-acid oxidase, peroxisomal; oxidoreductase (oxygen(A)); HET: FMN; 2.00A {Spinacia oleracea} SCOP: c.1.4.1 PDB: 1gyl_A* 1al8_A* 1al7_A* 2cdh_0 Back     alignment and structure
>1p4c_A L(+)-mandelate dehydrogenase; TIM barrel, hydroxy acid oxidizing enzyme, oxidoreductase; HET: FMN MES; 1.35A {Pseudomonas putida} SCOP: c.1.4.1 PDB: 1huv_A* 1p5b_A* 3giy_A* 2a7p_A* 2a85_A* 2a7n_A* Back     alignment and structure
>1kbi_A Cytochrome B2, L-LCR; flavocytochrome B2, electron transfer, oxidoreductase; HET: HEM FMN; 2.30A {Saccharomyces cerevisiae} SCOP: c.1.4.1 d.120.1.1 PDB: 1fcb_A* 1lco_A* 1ldc_A* 1sze_A* 2oz0_A* 1szf_A* 1szg_A* 1ltd_A* 1kbj_A* 1qcw_A* 3ks0_A* Back     alignment and structure
>2qr6_A IMP dehydrogenase/GMP reductase; NP_599840.1, G reductase domain, structural genomics, joint center for STR genomics, JCSG; HET: MSE; 1.50A {Corynebacterium glutamicum atcc 13032} Back     alignment and structure
>1vcf_A Isopentenyl-diphosphate delta-isomerase; TIM barrel, structural genomics, riken structural genomics/P initiative, RSGI; HET: FMN; 2.60A {Thermus thermophilus} SCOP: c.1.4.1 PDB: 1vcg_A* 3dh7_A* Back     alignment and structure
>3r2g_A Inosine 5'-monophosphate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.94A {Legionella pneumophila subsp} Back     alignment and structure
>3sr7_A Isopentenyl-diphosphate delta-isomerase; isopentenyl pyrophosphate isomerase, TIM-barrel; 2.04A {Streptococcus mutans} Back     alignment and structure
>1p0k_A Isopentenyl-diphosphate delta-isomerase; terpene biosynthesis, dimethylallyl diphosphate, flavoprotein; 1.90A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1p0n_A* Back     alignment and structure
>3vkj_A Isopentenyl-diphosphate delta-isomerase; type 2 isopentenyl diphosphate isomerase; HET: FNR; 1.70A {Sulfolobus shibatae} PDB: 2zrv_A* 2zrw_A* 2zrx_A* 2zry_A* 2zrz_A* 3b03_A* 3b04_A* 3b05_A* 3b06_A* 2zru_A* Back     alignment and structure
>1ypf_A GMP reductase; GUAC, purines, pyrimidines, nucleosides, nucleotides, nucleo nucleoside interconversions, spine, structural genomics; 1.80A {Bacillus anthracis} PDB: 2a1y_A* Back     alignment and structure
>1eep_A Inosine 5'-monophosphate dehydrogenase; alpha-beta barrel, TIM barrel, IMPDH, IMP dehydrogenase, LOO purine biosynthesis, oxidoreductase; 2.40A {Borrelia burgdorferi} SCOP: c.1.5.1 Back     alignment and structure
>2c6q_A GMP reductase 2; TIM barrel, metal-binding, NADP, oxidoreductase, potassium; HET: IMP NDP; 1.70A {Homo sapiens} PDB: 2bzn_A* 2a7r_A* 2ble_A* 2bwg_A* Back     alignment and structure
>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A* Back     alignment and structure
>3khj_A Inosine-5-monophosphate dehydrogenase; enzyme-inhibitor complex, oxidoreductase; HET: IMP C64; 2.80A {Cryptosporidium parvum} Back     alignment and structure
>1f76_A Dihydroorotate dehydrogenase; monomer, alpha-beta-barrel, FMN binding domain, orotate complex, oxidoreductase; HET: MSE FMN ORO; 2.50A {Bacteria} SCOP: c.1.4.1 Back     alignment and structure
>4fo4_A Inosine 5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.03A {Vibrio cholerae o1 biovar el tor} PDB: 4ff0_A* 4hlv_A* 4fez_A Back     alignment and structure
>2e6f_A Dihydroorotate dehydrogenase; chagas disease, pyrimidine biosynthesis, fumarate reductase, energy metabolism, redox homeostasis, flavoprotein; HET: FMN OXC; 1.26A {Trypanosoma cruzi} PDB: 2e6a_A* 2e6d_A* 2e68_A* 2djl_A* 2djx_A* 3c3n_A* 2b4g_A* 3c61_A* 3mhu_A* 3mjy_A* Back     alignment and structure
>1ep3_A Dihydroorotate dehydrogenase B (PYRD subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ep2_A* 1ep1_A* Back     alignment and structure
>1vhn_A Putative flavin oxidoreducatase; structural genomics, unknown function; HET: FMN; 1.59A {Thermotoga maritima} SCOP: c.1.4.1 Back     alignment and structure
>1jub_A Dihydroorotate dehydrogenase A; homodimer, alpha-beta barrel, flavoprotein, mutant enzyme, oxidoreductase; HET: FMN; 1.40A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ovd_A* 1jue_A* 1dor_A* 2bsl_A* 2bx7_A* 2dor_A* 1jqv_A* 1jrb_A* 1jrc_A* 1jqx_A* Back     alignment and structure
>2z6i_A Trans-2-enoyl-ACP reductase II; fatty acid synthesis, antibiotics, oxidoreductase, flavoprotein; HET: FMN; 1.70A {Streptococcus pneumoniae} PDB: 2z6j_A* Back     alignment and structure
>2gjl_A Hypothetical protein PA1024; 2-nitropropane dioxygenase, 2-nitropropane, FMN, oxidoreduct; HET: FMN; 2.00A {Pseudomonas aeruginosa PAO1} PDB: 2gjn_A* Back     alignment and structure
>3tjx_A Dihydroorotate dehydrogenase; PYRD, dhodh, lmdhodh, oxidored mutation H174A; HET: FMN; 1.64A {Leishmania major} PDB: 3gz3_A* 3gye_A* 3tro_A* Back     alignment and structure
>1wv2_A Thiazole moeity, thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI; 2.90A {Pseudomonas aeruginosa} SCOP: c.1.31.1 Back     alignment and structure
>3b0p_A TRNA-dihydrouridine synthase; TIM barrel, oxidoreductase; HET: FMN; 1.70A {Thermus thermophilus} PDB: 3b0u_X* 3b0v_C* Back     alignment and structure
>3bw2_A 2-nitropropane dioxygenase; TIM barrel, oxidoreductase; HET: FMN; 2.10A {Streptomyces ansochromogenes} PDB: 3bw4_A* 3bw3_A* Back     alignment and structure
>1ea0_A Glutamate synthase [NADPH] large chain; oxidoreductase, iron sulphur flavoprotein; HET: OMT FMN AKG; 3.0A {Azospirillum brasilense} SCOP: b.80.4.1 c.1.4.1 d.153.1.1 PDB: 2vdc_A* Back     alignment and structure
>3ffs_A Inosine-5-monophosphate dehydrogenase; beta-alpha barrel, TIM fold, oxidoreductase; 3.19A {Cryptosporidium parvum} Back     alignment and structure
>3bo9_A Putative nitroalkan dioxygenase; TM0800, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 2PE; 2.71A {Thermotoga maritima MSB8} Back     alignment and structure
>4ef8_A Dihydroorotate dehydrogenase; phenyl isothiocyanate, PYRD, oxidoreductase, oxidoreductase-oxidor inhibitor complex; HET: FMN; 1.56A {Leishmania major} PDB: 3gye_A* 3gz3_A* 4ef9_A* 3tro_A* 3tjx_A* Back     alignment and structure
>1ofd_A Ferredoxin-dependent glutamate synthase 2; oxidoreductase, complex enzyme, substrate channeling, amidotransferase, flavoprotein, iron-sulphur; HET: FMN AKG; 2.00A {Synechocystis SP} SCOP: b.80.4.1 c.1.4.1 d.153.1.1 PDB: 1llz_A* 1lm1_A* 1llw_A* 1ofe_A* Back     alignment and structure
>3oix_A Putative dihydroorotate dehydrogenase; dihydrooro oxidase; TIM barrel, oxidoreductase; HET: MLY FMN; 2.40A {Streptococcus mutans} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 239
d1goxa_ 359 c.1.4.1 (A:) Glycolate oxidase {Spinach (Spinacia 3e-45
d1kbia1 414 c.1.4.1 (A:98-511) Flavocytochrome b2, C-terminal 6e-45
d1tb3a1 349 c.1.4.1 (A:1-349) Hydroxyacid oxidase {Rat (Rattus 4e-41
d1p4ca_ 353 c.1.4.1 (A:) Membrane-associated (S)-mandelate deh 1e-40
d1p0ka_ 329 c.1.4.1 (A:) Isopentenyl-diphosphate delta-isomera 9e-24
d1vcfa1 310 c.1.4.1 (A:23-332) Isopentenyl-diphosphate delta-i 1e-22
>d1goxa_ c.1.4.1 (A:) Glycolate oxidase {Spinach (Spinacia oleracea) [TaxId: 3562]} Length = 359 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Glycolate oxidase
species: Spinach (Spinacia oleracea) [TaxId: 3562]

 Score =  152 bits (385), Expect = 3e-45
 Identities = 110/179 (61%), Positives = 142/179 (79%)

Query: 34  EPVNLNEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLS 93
           E  N+NE++ +A+  LPKM YD+YA GAED+ TL EN  AF RI FRPRIL+DV+ ID++
Sbjct: 2   EITNVNEYEAIAKQKLPKMVYDYYASGAEDQWTLAENRNAFSRILFRPRILIDVTNIDMT 61

Query: 94  TTILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFTSSSSIEEVAASCN 153
           TTIL +KIS PI+IAPTA+ K+A+PEGE ATARAA++  TIM LS  ++SS+EEVA++  
Sbjct: 62  TTILGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWATSSVEEVASTGP 121

Query: 154 AVRFYQLYVFKKRDIAATLVQRAERNGFKALVLTADTPRLGRREADIKNKMITPPLKNL 212
            +RF+QLYV+K R++ A LV+RAER GFKA+ LT DTPRLGRREADIKN+ + PP   L
Sbjct: 122 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPFLTL 180
>d1kbia1 c.1.4.1 (A:98-511) Flavocytochrome b2, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 414 Back     information, alignment and structure
>d1tb3a1 c.1.4.1 (A:1-349) Hydroxyacid oxidase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 349 Back     information, alignment and structure
>d1p4ca_ c.1.4.1 (A:) Membrane-associated (S)-mandelate dehydrogenase {Pseudomonas putida [TaxId: 303]} Length = 353 Back     information, alignment and structure
>d1p0ka_ c.1.4.1 (A:) Isopentenyl-diphosphate delta-isomerase {Bacillus subtilis [TaxId: 1423]} Length = 329 Back     information, alignment and structure
>d1vcfa1 c.1.4.1 (A:23-332) Isopentenyl-diphosphate delta-isomerase {Thermus thermophilus [TaxId: 274]} Length = 310 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query239
d1tb3a1 349 Hydroxyacid oxidase {Rat (Rattus norvegicus) [TaxI 100.0
d1goxa_ 359 Glycolate oxidase {Spinach (Spinacia oleracea) [Ta 100.0
d1kbia1 414 Flavocytochrome b2, C-terminal domain {Baker's yea 100.0
d1p4ca_ 353 Membrane-associated (S)-mandelate dehydrogenase {P 100.0
d1p0ka_ 329 Isopentenyl-diphosphate delta-isomerase {Bacillus 99.77
d1vcfa1 310 Isopentenyl-diphosphate delta-isomerase {Thermus t 99.76
d1pvna1 362 Inosine monophosphate dehydrogenase (IMPDH) {Tritr 95.11
d1gtea2 312 Dihydropyrimidine dehydrogenase, domain 4 {Pig (Su 95.1
d1eepa_ 388 Inosine monophosphate dehydrogenase (IMPDH) {Lyme 94.27
d1jr1a1 378 Inosine monophosphate dehydrogenase (IMPDH) {Chine 94.19
d2cu0a1 368 Inosine monophosphate dehydrogenase (IMPDH) {Pyroc 93.6
d1zfja1 365 Inosine monophosphate dehydrogenase (IMPDH) {Strep 93.56
d1vrda1 330 Inosine monophosphate dehydrogenase (IMPDH) {Therm 92.23
d2b4ga1 312 Dihydroorotate dehydrogenase {Trypanosoma brucei [ 87.65
d1ep3a_ 311 Dihydroorotate dehydrogenase {Lactococcus lactis, 85.15
d1juba_ 311 Dihydroorotate dehydrogenase {Lactococcus lactis, 80.78
>d1tb3a1 c.1.4.1 (A:1-349) Hydroxyacid oxidase {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Hydroxyacid oxidase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=5e-47  Score=346.49  Aligned_cols=173  Identities=46%  Similarity=0.663  Sum_probs=169.6

Q ss_pred             CCCHHHHHHHHHHhCChhhhhhhcCCccchhcHHHHHHHhcccccccccccCCCCCCcceeecCcccCcceEeccccchh
Q 026410           35 PVNLNEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTALHK  114 (239)
Q Consensus        35 ~~~l~D~e~~Ar~~Lp~~~~~Y~~gGa~de~T~~~N~~af~ri~l~PRvL~dv~~~Dtst~llG~~~s~Pi~iaP~g~~~  114 (239)
                      ++||+|||+.||++||+.+|+|++||++||.|+++|+++|++|+|+||+|+|++++||+|+|||+++++||+|+||++++
T Consensus         2 ~~~i~d~~~~A~~~lp~~~~~y~~~ga~de~t~~~N~~aFd~i~l~pr~L~d~~~idlst~~lG~~l~~P~~Iapmtgg~   81 (349)
T d1tb3a1           2 LVCLADFKAHAQKQLSKTSWDFIEGEADDGITYSENIAAFKRIRLRPRYLRDMSKVDTRTTIQGQEISAPICISPTAFHS   81 (349)
T ss_dssp             CCSHHHHHHHHHHTSCHHHHHHHHCCCTTCHHHHHHHHHHHHCCBCCCCSSCCSSCBCCEEETTEEESSSEEECCCSCGG
T ss_pred             cccHHHHHHHHHHHCCHHHHHHHhccccccHHHHHHHHHHHhccEEcccccCCCCCCCceeECCcCccceEEEcchhccc
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCcHHHHHHHHHHhhcCCceeecCCCCCcHHHHHhhcC-CceeEEEEeecCHHHHHHHHHHHHHcCCcEEEEeecCCCC
Q 026410          115 LANPEGEVATARAAASCNTIMVLSFTSSSSIEEVAASCN-AVRFYQLYVFKKRDIAATLVQRAERNGFKALVLTADTPRL  193 (239)
Q Consensus       115 l~hp~gE~alArAA~~~gi~~~lSs~ss~sleeia~~~~-~~~wfQLy~~~dr~~~~~li~rAe~aG~~AlvvTVD~p~~  193 (239)
                      +.|+++|.++|++|+++|++|++||+++.++|++.++.+ ++.|||+|+++|++.++++++|++++|++++++|||.|+.
T Consensus        82 ~~~~~~~~~lA~aA~~~g~~~~~~s~s~~~~e~v~~~~~~~~~~~ql~~~~~~~~~~~~i~~~~~~g~~a~~~tvd~~~~  161 (349)
T d1tb3a1          82 IAWPDGEKSTARAAQEANICYVISSYASYSLEDIVAAAPEGFRWFQLYMKSDWDFNKQMVQRAEALGFKALVITIDTPVL  161 (349)
T ss_dssp             GTCTTTHHHHHHHHHHHTCCEEECTTCSSCHHHHHHHSTTCCEEEECCCCSCTTHHHHHHHHHHHHTCCCEEEECSCSSC
T ss_pred             ccccchhhHHHHhhhhcccceeecccccccchhhhhhccCCCeeeeeecccCHHHHHHHHHHHHhcCCcccccccCchhh
Confidence            999999999999999999999999999999999988775 7899999999999999999999999999999999999999


Q ss_pred             CCchhHhhcCCCCC
Q 026410          194 GRREADIKNKMITP  207 (239)
Q Consensus       194 g~Re~d~r~~f~~p  207 (239)
                      |+|++|.|++|.+|
T Consensus       162 ~~~~~d~r~~~~~~  175 (349)
T d1tb3a1         162 GNRRRDKRNQLNLE  175 (349)
T ss_dssp             CCCHHHHHTTCCCC
T ss_pred             cchhhhhhccccCC
Confidence            99999999999988
>d1goxa_ c.1.4.1 (A:) Glycolate oxidase {Spinach (Spinacia oleracea) [TaxId: 3562]} Back     information, alignment and structure
>d1kbia1 c.1.4.1 (A:98-511) Flavocytochrome b2, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1p4ca_ c.1.4.1 (A:) Membrane-associated (S)-mandelate dehydrogenase {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
>d1p0ka_ c.1.4.1 (A:) Isopentenyl-diphosphate delta-isomerase {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1vcfa1 c.1.4.1 (A:23-332) Isopentenyl-diphosphate delta-isomerase {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1pvna1 c.1.5.1 (A:2-99,A:231-494) Inosine monophosphate dehydrogenase (IMPDH) {Tritrichomonas foetus [TaxId: 5724]} Back     information, alignment and structure
>d1gtea2 c.1.4.1 (A:533-844) Dihydropyrimidine dehydrogenase, domain 4 {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d1eepa_ c.1.5.1 (A:) Inosine monophosphate dehydrogenase (IMPDH) {Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]} Back     information, alignment and structure
>d1jr1a1 c.1.5.1 (A:17-112,A:233-514) Inosine monophosphate dehydrogenase (IMPDH) {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Back     information, alignment and structure
>d2cu0a1 c.1.5.1 (A:3-96,A:207-480) Inosine monophosphate dehydrogenase (IMPDH) {Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1zfja1 c.1.5.1 (A:2-94,A:221-492) Inosine monophosphate dehydrogenase (IMPDH) {Streptococcus pyogenes [TaxId: 1314]} Back     information, alignment and structure
>d1vrda1 c.1.5.1 (A:1-85,A:213-457) Inosine monophosphate dehydrogenase (IMPDH) {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d2b4ga1 c.1.4.1 (A:2-313) Dihydroorotate dehydrogenase {Trypanosoma brucei [TaxId: 5691]} Back     information, alignment and structure
>d1ep3a_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Lactococcus lactis, isozyme B [TaxId: 1358]} Back     information, alignment and structure
>d1juba_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Lactococcus lactis, isozyme A [TaxId: 1358]} Back     information, alignment and structure