Citrus Sinensis ID: 026416

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------24

MEGKAKEEAGKGGVIDTWLRKHRLIYIGATRHPFILAIRDGTVNYSSFKKWLGQDYIFVREFVAFAASVLVKAWKESDDSKGDTEVILGGMAGLHDEIAWFKKEASKWGVELSETVPQKANQVYCRFLESLMSPEVDYTVAITVFWAIEAVYQESFAHCLEPDTNTPPELQEVCQRWGNDGFGQYCHSLKKIANRLLEKASDDLIMGKAGDDVLKKAEVELIRVLEHEVEFWNMSRGTA

cccccHHccccccHHHHHHHHcHHHHHHHHccHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHccHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHccc

cccccHHHcccccHHHHHHHHcHHHHHHHHccHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHccHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHcccc

megkakeeagkggvidtwLRKHRLIYIGATRHPFILAIRDGTVNYSSFKKWLGQDYIFVREFVAFAASVLVKAWkesddskgdtEVILGGMAGLHDEIAWFKKEASKWGVELSETVPQKANQVYCRFLEslmspevdYTVAITVFWAIEAVYQESFahclepdtntppeLQEVCQRwgndgfgqYCHSLKKIANRLLEKasddlimgkagdDVLKKAEVELIRVLEHEVEFWNMSRGTA

megkakeeagkggvidtwlRKHRLIYIGATRHPFILAIRDGTVNYSSFKKWLGQDYIFVREFVAFAASVLVKawkesddskgdTEVILGGMAGLHDEIAWFKKEASKWGVELSETVPQKANQVYCRFLESLMSPEVDYTVAITVFWAIEAVYQESFAHCLEPDTNTPPELQEVCQRWGNDGFGQYCHSLKKIANRLLEKASDDLIMGKAGDDVLKKAEVELIRVlehevefwnmsrgta

MegkakeeagkggVIDTWLRKHRLIYIGATRHPFILAIRDGTVNYSSFKKWLGQDYIFVREFVAFAASVLVKAWKESDDSKGDTEVILGGMAGLHDEIAWFKKEASKWGVELSETVPQKANQVYCRFLESLMSPEVDYTVAITVFWAIEAVYQESFAHCLEPDTNTPPELQEVCQRWGNDGFGQYCHSLKKIANRLLEKASDDLIMGKAGDDVLKKAEVELIRVLEHEVEFWNMSRGTA

************GVIDTWLRKHRLIYIGATRHPFILAIRDGTVNYSSFKKWLGQDYIFVREFVAFAASVLVKAWKESD**KGDTEVILGGMAGLHDEIAWFKKEASKWGVELSETVPQKANQVYCRFLESLMSPEVDYTVAITVFWAIEAVYQESFAHCLEPDTNTPPELQEVCQRWGNDGFGQYCHSLKKIANRLLEKASDDLIMGKAGDDVLKKAEVELIRVLEHEVEFWN******

***************DTWLRKHRLIYIGATRHPFILAIRDGTVNYSSFKKWLGQDYIFVREFVAFAASVLVKAWKESDDSKGDTEVILGGMAGLHDEIAWFKKEASKWGVELSETVPQKANQVYCRFLESLMSPEVDYTVAITVFWAIEAVYQESFAHCLEPDTNTPPELQEVCQRWGNDGFGQYCHSLKKIANRLLEKASDDLIMGKAGDDVLKKAEVELIRVLEHEVEFWNMSRG**

***********GGVIDTWLRKHRLIYIGATRHPFILAIRDGTVNYSSFKKWLGQDYIFVREFVAFAASVLVKAWKESDDSKGDTEVILGGMAGLHDEIAWFKKEASKWGVELSETVPQKANQVYCRFLESLMSPEVDYTVAITVFWAIEAVYQESFAHCLEPDTNTPPELQEVCQRWGNDGFGQYCHSLKKIANRLLEKASDDLIMGKAGDDVLKKAEVELIRVLEHEVEFWNMSRGTA

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

iiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		239	2.2.26 [Sep-21-2011]
Q9SWB6		229	Seed maturation protein P	yes	no	0.953	0.995	0.676	3e-92
Q9ASY9		221	Seed maturation protein P	yes	no	0.907	0.981	0.625	2e-76
O59743		242	Uncharacterized protein C	yes	no	0.740	0.731	0.233	2e-05

>sp\|Q9SWB6\|PM36_SOYBN Seed maturation protein PM36 OS=Glycine max GN=PM36 PE=2 SV=1	Back alignment and function desciption

 Score =  338 bits (866), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 161/238 (67%), Positives = 188/238 (78%), Gaps = 10/238 (4%)

Query: 1   MEGKAKEEAGKGGVIDTWLRKHRLIYIGATRHPFILAIRDGTVNYSSFKKWLGQDYIFVR 60
           ME KAK E  K G+ +TWL+KHRL+Y GATRHP I++IRDGT+N +SFK WL QDY+FVR
Sbjct: 1   MEEKAKAEQKKIGMTETWLKKHRLLYNGATRHPLIISIRDGTINTASFKTWLAQDYLFVR 60

Query: 61  EFVAFAASVLVKAWKESDDSKGDTEVILGGMAGLHDEIAWFKKEASKWGVELSETVPQKA 120
            FV F ASVL+KAWKESD S GD EVILGGMA L DEI+WFK EA+KWG+ LS+ VPQ+A
Sbjct: 61  AFVPFVASVLIKAWKESDCS-GDMEVILGGMASLEDEISWFKTEANKWGISLSDVVPQQA 119

Query: 121 NQVYCRFLESLMSPEVDYTVAITVFWAIEAVYQESFAHCLEPDTNTPPELQEVCQRWGND 180
           N+ YC  LESLMSP+ +YTVAIT FWAIE VYQESFAHC+E  + TPPEL+E C RWGN+
Sbjct: 120 NKNYCGLLESLMSPDAEYTVAITAFWAIETVYQESFAHCIEEGSKTPPELKETCVRWGNE 179

Query: 181 GFGQYCHSLKKIANRLLEKASDDLIMGKAGDDVLKKAEVELIRVLEHEVEFWNMSRGT 238
            FG+YC SL+ IANR L+KAS         D+ LKKAEV L+ VLEHEVEFWNMSRG 
Sbjct: 180 AFGKYCQSLQNIANRCLQKAS---------DEELKKAEVMLLSVLEHEVEFWNMSRGN 228

Glycine max (taxid: 3847)

>sp\|Q9ASY9\|PM36_ARATH Seed maturation protein PM36 homolog OS=Arabidopsis thaliana GN=At3g16990 PE=1 SV=3	Back alignment and function description

>sp\|O59743\|YN27_SCHPO Uncharacterized protein C530.07c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC530.07c PE=4 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		239
359477222		225	PREDICTED: seed maturation protein PM36	0.924	0.982	0.715	2e-91
351724199		229	seed maturation protein PM36 [Glycine ma	0.953	0.995	0.676	2e-90
357478951		231	Seed maturation protein PM36 [Medicago t	0.945	0.978	0.677	9e-89
357478949		318	Seed maturation protein PM36 [Medicago t	0.945	0.710	0.677	3e-88
296083260		204	unnamed protein product [Vitis vinifera]	0.853	1.0	0.714	3e-84
224099175		225	predicted protein [Populus trichocarpa]	0.907	0.964	0.647	3e-81
255625987		211	unknown [Glycine max]	0.845	0.957	0.689	1e-80
388510064		225	unknown [Medicago truncatula]	0.836	0.888	0.706	5e-80
255556348		230	Seed maturation protein PM36, putative [	0.949	0.986	0.613	2e-79
449460951		244	PREDICTED: seed maturation protein PM36-	0.903	0.885	0.641	1e-77

>gi\|359477222\|ref\|XP_002277268.2\| PREDICTED: seed maturation protein PM36 [Vitis vinifera]	Back alignment and taxonomy information

 Score =  340 bits (873), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 166/232 (71%), Positives = 192/232 (82%), Gaps = 11/232 (4%)

Query: 6   KEEAGKGGVIDTWLRKHRLIYIGATRHPFILAIRDGTVNYSSFKKWLGQDYIFVREFVAF 65
           K E G GGVI+TWL+KHR++YI AT+HP IL+IRDGT+++SSFK+WLGQDYIFVR FV F
Sbjct: 5   KMEVG-GGVIETWLKKHRMLYIRATKHPLILSIRDGTIDFSSFKRWLGQDYIFVRAFVPF 63

Query: 66  AASVLVKAWKESDDSKGDTEVILGGMAGLHDEIAWFKKEASKWGVELSETVPQKANQVYC 125
           +ASVL+KA KESD+S  D EVILGGMA L+DEIAWFKKEASKWG+ELS  VPQK NQ YC
Sbjct: 64  SASVLLKACKESDNS-SDMEVILGGMASLNDEIAWFKKEASKWGLELSTIVPQKVNQEYC 122

Query: 126 RFLESLMSPEVDYTVAITVFWAIEAVYQESFAHCLEPDTNTPPELQEVCQRWGNDGFGQY 185
           RFLESLMSP+V+YTVAIT FWAIEAVYQE FA CL+  + TPPEL+E CQRWGNDGFGQY
Sbjct: 123 RFLESLMSPQVEYTVAITAFWAIEAVYQEGFALCLQDGSKTPPELKETCQRWGNDGFGQY 182

Query: 186 CHSLKKIANRLLEKASDDLIMGKAGDDVLKKAEVELIRVLEHEVEFWNMSRG 237
           C SL+ IANR L         GKA  DV+ +AEV L++VLE EVEFWNMS+G
Sbjct: 183 CRSLQNIANRHL---------GKAPPDVVARAEVALLQVLELEVEFWNMSQG 225

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|351724199\|ref\|NP_001238329.1\| seed maturation protein PM36 [Glycine max] gi\|62287132\|sp\|Q9SWB6.1\|PM36_SOYBN RecName: Full=Seed maturation protein PM36 gi\|5802242\|gb\|AAD51624.1\| seed maturation protein PM36 [Glycine max]	Back alignment and taxonomy information

>gi\|357478951\|ref\|XP_003609761.1\| Seed maturation protein PM36 [Medicago truncatula] gi\|355510816\|gb\|AES91958.1\| Seed maturation protein PM36 [Medicago truncatula]	Back alignment and taxonomy information

>gi\|357478949\|ref\|XP_003609760.1\| Seed maturation protein PM36 [Medicago truncatula] gi\|355510815\|gb\|AES91957.1\| Seed maturation protein PM36 [Medicago truncatula]	Back alignment and taxonomy information

>gi\|296083260\|emb\|CBI22896.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|224099175\|ref\|XP_002311391.1\| predicted protein [Populus trichocarpa] gi\|222851211\|gb\|EEE88758.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|255625987\|gb\|ACU13338.1\| unknown [Glycine max]	Back alignment and taxonomy information

>gi\|388510064\|gb\|AFK43098.1\| unknown [Medicago truncatula]	Back alignment and taxonomy information

>gi\|255556348\|ref\|XP_002519208.1\| Seed maturation protein PM36, putative [Ricinus communis] gi\|223541523\|gb\|EEF43072.1\| Seed maturation protein PM36, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|449460951\|ref\|XP_004148207.1\| PREDICTED: seed maturation protein PM36-like [Cucumis sativus] gi\|449501520\|ref\|XP_004161390.1\| PREDICTED: seed maturation protein PM36-like [Cucumis sativus]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		239
TAIR\|locus:2086052		221	AT3G16990 "AT3G16990" [Arabido	0.895	0.968	0.625	2.6e-70
POMBASE\|SPBC530.07c		242	SPBC530.07c "TENA/THI family p	0.372	0.367	0.280	2.2e-05
ASPGD\|ASPL0000034870		257	AN2853 [Emericella nidulans (t	0.380	0.354	0.252	5.9e-05
TIGR_CMR\|BA_0725		231	BA_0725 "transcriptional activ	0.799	0.826	0.217	0.00041

TAIR\|locus:2086052 AT3G16990 "AT3G16990" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 712 (255.7 bits), Expect = 2.6e-70, P = 2.6e-70
 Identities = 140/224 (62%), Positives = 166/224 (74%)

Query:    14 VIDTWLRKHRLIYIGATRHPFILAIRDGTVNYSSFKKWLGQDYIFVREFVAFAASVLVKA 73
             VIDTW+ KHR IY  ATRH F+++IRDG+V+ SSF+ WLGQDY+FVR FV F ASVL++A
Sbjct:     6 VIDTWIDKHRSIYTAATRHAFVVSIRDGSVDLSSFRTWLGQDYLFVRRFVPFVASVLIRA 65

Query:    74 WKESDDSKGDTEVILGGMAGLHDEIAWFKKEASKWGVELSETVPQKANQVYCRFLESLMS 133
              K+S +S  D EV+LGG+A L+DEI WFK+E SKW V+ S  VPQ+ANQ Y RFLE LMS
Sbjct:    66 CKDSGESS-DMEVVLGGIASLNDEIEWFKREGSKWDVDFSTVVPQRANQEYGRFLEDLMS 124

Query:   134 PEVDYTVAITVFWAIEAVYQESFAHCLEPDTNTPPELQEVCQRWGNDGFGQYCHSLKKIA 193
              EV Y V +T FWAIEAVYQESFAHCLE    TP EL   C RWGNDGF QYC S+K IA
Sbjct:   125 SEVKYPVIMTAFWAIEAVYQESFAHCLEDGNKTPVELTGACHRWGNDGFKQYCSSVKNIA 184

Query:   194 NRLLEKASDDLIMGKAGDDVLKKAEVELIRVLEHEVEFWNMSRG 237
              R LE AS + ++G+A +DVL       +RVLE EV FW MSRG
Sbjct:   185 ERCLENASGE-VLGEA-EDVL-------VRVLELEVAFWEMSRG 219

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

POMBASE\|SPBC530.07c SPBC530.07c "TENA/THI family protein" [Schizosaccharomyces pombe (taxid:4896)]	Back alignment and assigned GO terms

ASPGD\|ASPL0000034870 AN2853 [Emericella nidulans (taxid:162425)]	Back alignment and assigned GO terms

TIGR_CMR\|BA_0725 BA_0725 "transcriptional activator TenA, putative" [Bacillus anthracis str. Ames (taxid:198094)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9ASY9	PM36_ARATH	No assigned EC number	0.6255	0.9079	0.9819	yes	no
Q9SWB6	PM36_SOYBN	No assigned EC number	0.6764	0.9539	0.9956	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	1.3.3	LOW CONFIDENCE prediction!
3rd Layer	1.3.3.11	LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		239
pfam03070		210	pfam03070, TENA_THI-4, TENA/THI-4/PQQC family	3e-38
COG0819		218	COG0819, TenA, Putative transcription activator [T	1e-12
TIGR04306		208	TIGR04306, salvage_TenA, thiaminase II	2e-06

>gnl\|CDD\|217351 pfam03070, TENA_THI-4, TENA/THI-4/PQQC family	Back alignment and domain information

 Score =  132 bits (333), Expect = 3e-38
 Identities = 56/224 (25%), Positives = 93/224 (41%), Gaps = 18/224 (8%)

Query: 19  LRKHRLIYIGATRHPFILAIRDGTVNYSSFKKWLGQDYIFVREFVAFAASVLVKAWKESD 78
            RK R I+     HPF+ A+  GT+    F+ +L QDY++++ F    A   + A K  D
Sbjct: 1   HRKLRPIWDEYYHHPFVQALAKGTLPREQFQAYLIQDYLYLKNFPRVLA---ILASKAPD 57

Query: 79  DSKGDTEVILGGMAGLHDEIAWFKKEASKWGV---ELSETVPQKANQVYCRFLESLMSPE 135
                 E I   +  +  EI    + A   G+   +LS+T P  A + Y  +L  L +  
Sbjct: 58  LE-LRREWIDRILDHIGGEIELHLRLAEALGLSREDLSKTEPLPAAKAYVNYLLDL-ARR 115

Query: 136 VDYTVAITVFWAIEAVYQESFAHCLE-PDTNTPPELQEVCQRWGNDGFGQYCHSLKKIAN 194
             +  A+        VYQE      E  +  +  E  E    +G++ F       +++ N
Sbjct: 116 GSWLEALAALLPCLFVYQEIAERLKEKINGLSGSEYYEWIDDYGSEEFRSAVEEAERLLN 175

Query: 195 RLLEKASDDLIMGKAGDDVLKKAEVELIRVLEHEVEFWNMSRGT 238
            LL   S         D  L++ +   +  LE E+ FW+M+   
Sbjct: 176 HLLAYVS---------DSELEELQEIFLTSLEFELSFWDMAYDA 210

Members of this family are found in all the three major phyla of life: archaebacteria, eubacteria, and eukaryotes. In Bacillus subtilis, TENA is one of a number of proteins that enhance the expression of extracellular enzymes, such as alkaline protease, neutral protease and levansucrase. The THI-4 protein, which is involved in thiamine biosynthesis, is also a member of this family. The C-terminal part of these proteins consistently show significant sequence similarity to TENA proteins. This similarity was first noted with the Neurospora crassa THI-4. This family includes bacterial coenzyme PQQ synthesis protein C or PQQC proteins. Pyrroloquinoline quinone (PQQ) is the prosthetic group of several bacterial enzymes,including methanol dehydrogenase of methylotrophs and the glucose dehydrogenase of a number of bacteria. PQQC has been found to be required in the synthesis of PQQ but its function is unclear. The exact molecular function of members of this family is uncertain. Length = 210

>gnl\|CDD\|223889 COG0819, TenA, Putative transcription activator [Transcription]	Back alignment and domain information

>gnl\|CDD\|213919 TIGR04306, salvage_TenA, thiaminase II	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		239
COG0819		218	TenA Putative transcription activator [Transcripti	100.0
PRK14713		530	multifunctional hydroxymethylpyrimidine phosphokin	100.0
PRK09517		755	multifunctional thiamine-phosphate pyrophosphoryla	100.0
PF03070		210	TENA_THI-4: TENA/THI-4/PQQC family; InterPro: IPR0	100.0
PTZ00347		504	phosphomethylpyrimidine kinase; Provisional	100.0
KOG2598		523	consensus Phosphomethylpyrimidine kinase [Coenzyme	99.96
COG5424		242	Pyrroloquinoline quinone (Coenzyme PQQ) biosynthes	99.31
PRK05157		246	pyrroloquinoline quinone biosynthesis protein PqqC	99.18
TIGR02111		239	PQQ_syn_pqqC coenzyme PQQ biosynthesis protein C.	99.1
CHL00168		238	pbsA heme oxygenase; Provisional	97.5
cd00232		203	HemeO Heme oxygenase catalyzes the rate limiting s	97.49
PF01126		205	Heme_oxygenase: Heme oxygenase; InterPro: IPR01605	96.48
COG5398		238	Heme oxygenase [Inorganic ion transport and metabo	95.42
PF12981		231	DUF3865: Domain of Unknown Function with PDB struc	95.27
PF14518		106	Haem_oxygenas_2: Iron-containing redox enzyme; PDB	92.34

>COG0819 TenA Putative transcription activator [Transcription]	Back alignment and domain information

Probab=100.00  E-value=1.4e-55  Score=369.33  Aligned_cols=212  Identities=21%  Similarity=0.309  Sum_probs=196.1

Q ss_pred             CchHHHHHHHcHHHHHHhhcCHhHhhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCChhHHHHHHHHH
Q 026416           12 GGVIDTWLRKHRLIYIGATRHPFILAIRDGTVNYSSFKKWLGQDYIFVREFVAFAASVLVKAWKESDDSKGDTEVILGGM   91 (239)
Q Consensus        12 ~~~~~~L~~~~~~~w~~~~~HpFv~~l~~GtL~~~~f~~YL~QD~~yl~~~~r~~a~~~~ka~~~~~~~~~~~~~l~~~~   91 (239)
                      +.|++.|++.++|+|+++++||||++|++||||+++|++||+|||+||.+|+|+++++++|+|+     .+.+..+...+
T Consensus         1 ~~f~~~L~~~~~~~W~~~~~H~FV~~L~~GtL~~~~F~~YL~QDy~YL~~~~ra~~~~~~ka~~-----~~~~~~~~~~~   75 (218)
T COG0819           1 MMFSEELIRAAQPIWQKYIEHPFVQELADGTLPREKFQFYLVQDYLYLVNFARALALLASKAPD-----LELMEELAKII   75 (218)
T ss_pred             CchHHHHHHHhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-----HHHHHHHHHHH
Confidence            4689999999999999999999999999999999999999999999999999999999999999     78888888888


Q ss_pred             hh-HHHHHHHHHHHHHHcCCCC---CCCCCchHhHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHhhccCCCC-CC
Q 026416           92 AG-LHDEIAWFKKEASKWGVEL---SETVPQKANQVYCRFLESLMSPEVDYTVAITVFWAIEAVYQESFAHCLEPDT-NT  166 (239)
Q Consensus        92 ~~-~~~E~~~~~~~~~~~gi~~---~~~~~~pa~~~Y~~~l~~~a~~~~~~~~~l~a~~~c~~~Y~~i~~~~~~~~~-~~  166 (239)
                      .. +.+|+.+|+++++++||+.   .+.+++|+|.+||+||++++ ..|++.++++|+.||+|+|.+||+++..... +.
T Consensus        76 ~~~~~~E~~~h~~~~~~lgis~~~~~~~~~~~~~~aYt~ym~~~~-~~g~~~~~~aAl~PC~~~Y~eig~~~~~~~~~~~  154 (218)
T COG0819          76 QFLVEGEMELHERLAEELGISLDELLKTEPSPANKAYTRYLLDTA-YSGSFAELLAALLPCLWGYAEIGKRLKAKPRASP  154 (218)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCHHHHHhcCCCchHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHHHHHHHHhccccCC
Confidence            65 4679999999999999997   35789999999999999995 7888999999999999999999998765432 23


Q ss_pred             CchHHHHhhhcCChHHHHHHHHHHHHHHHHHhhcChhhhcccCcHHHHHHHHHHHHHHHHHHHHhchhhccC
Q 026416          167 PPELQEVCQRWGNDGFGQYCHSLKKIANRLLEKASDDLIMGKAGDDVLKKAEVELIRVLEHEVEFWNMSRGT  238 (239)
Q Consensus       167 ~~~y~~Wi~~y~s~~f~~~v~~l~~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~~~~E~~Fwd~a~~~  238 (239)
                      +++|++||++|+|++|++.|+.+++++|++++..++         +++++|..+|+++|++|..||||||+.
T Consensus       155 ~~~Y~~Wi~~Y~s~ef~~~v~~~~~~ld~~~~~~~~---------~~~~~l~~iF~~ss~~E~~Fwd~a~~~  217 (218)
T COG0819         155 NPPYQEWIDTYASEEFQEAVEELEALLDSLAENSSE---------EELEKLKQIFLTASRFELAFWDMAYRL  217 (218)
T ss_pred             CCcHHHHHHHcCCHHHHHHHHHHHHHHHHHHhcCCH---------HHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            468999999999999999999999999999998888         899999999999999999999999974

>PRK14713 multifunctional hydroxymethylpyrimidine phosphokinase/4-amino-5-aminomethyl-2-methylpyrimidine hydrolase; Provisional	Back alignment and domain information

>PRK09517 multifunctional thiamine-phosphate pyrophosphorylase/synthase/phosphomethylpyrimidine kinase; Provisional	Back alignment and domain information

>PF03070 TENA_THI-4: TENA/THI-4/PQQC family; InterPro: IPR004305 Proteins containing this domain are found in all the three major phyla of life: archaebacteria, eubacteria, and eukaryotes	Back alignment and domain information

>PTZ00347 phosphomethylpyrimidine kinase; Provisional	Back alignment and domain information

>KOG2598 consensus Phosphomethylpyrimidine kinase [Coenzyme transport and metabolism; Transcription]	Back alignment and domain information

>COG5424 Pyrroloquinoline quinone (Coenzyme PQQ) biosynthesis protein C [Coenzyme metabolism]	Back alignment and domain information

>PRK05157 pyrroloquinoline quinone biosynthesis protein PqqC; Provisional	Back alignment and domain information

>TIGR02111 PQQ_syn_pqqC coenzyme PQQ biosynthesis protein C	Back alignment and domain information

>CHL00168 pbsA heme oxygenase; Provisional	Back alignment and domain information

>cd00232 HemeO Heme oxygenase catalyzes the rate limiting step in the degradation of heme to bilirubin, it is essential for recycling of iron from heme	Back alignment and domain information

>PF01126 Heme_oxygenase: Heme oxygenase; InterPro: IPR016053 Haem oxygenase (1	Back alignment and domain information

>COG5398 Heme oxygenase [Inorganic ion transport and metabolism]	Back alignment and domain information

>PF12981 DUF3865: Domain of Unknown Function with PDB structure (DUF3865); InterPro: IPR024477 This entry represents a family of proteins of unknown function	Back alignment and domain information

>PF14518 Haem_oxygenas_2: Iron-containing redox enzyme; PDB: 3BJD_B	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		239
2f2g_A		221	X-Ray Structure Of Gene Product From Arabidopsis Th		2e-74
1rtw_A		220	X-Ray Structure Of Pf1337, A Tena Homologue From Py		1e-09
2rd3_A		223	Crystal Structure Of Tena Homologue (Hp1287) From H		3e-04
3ibx_A		221	Crystal Structure Of F47y Variant Of Tena (Hp1287)		8e-04

>pdb|2F2G|A Chain A, X-Ray Structure Of Gene Product From Arabidopsis Thaliana At3g16990 Length = 221

Back alignment and structure

Iteration: 1

Score = 275 bits (703), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 138/224 (61%), Positives = 160/224 (71%), Gaps = 10/224 (4%) Query: 14 VIDTWLRKHRLIYIGATRHPFILAIRDGTVNYSSFKKWLGQDYIFVREFVAFAASVLVKA 73 VIDTW+ KHR IY ATRH F+++IRDG+V+ SSF+ WLGQDY+FVR FV F ASVL++A Sbjct: 6 VIDTWIDKHRSIYTAATRHAFVVSIRDGSVDLSSFRTWLGQDYLFVRRFVPFVASVLIRA 65 Query: 74 WKESDDSKGDTEVILGGMAGLHDEIAWFKKEASKWGVELSETVPQKANQVYCRFLESLMS 133 K+S +S D EV+LGG+A L+DEI WFK+E SKW V+ S VPQ+ANQ Y RFLE L S Sbjct: 66 CKDSGESS-DXEVVLGGIASLNDEIEWFKREGSKWDVDFSTVVPQRANQEYGRFLEDLXS 124 Query: 134 PEVDYTVAITVFWAIEAVYQESFAHCLEPDTNTPPELQEVCQRWGNDGFGQYCHSLKKIA 193 EV Y V T FWAIEAVYQESFAHCLE TP EL C RWGNDGF QYC S+K IA Sbjct: 125 SEVKYPVIXTAFWAIEAVYQESFAHCLEDGNKTPVELTGACHRWGNDGFKQYCSSVKNIA 184 Query: 194 NRLLEKASDDLIMGKAGDDVLKKAEVELIRVLEHEVEFWNMSRG 237 R LE AS +VL +AE L+RVLE EV FW SRG Sbjct: 185 ERCLENAS---------GEVLGEAEDVLVRVLELEVAFWEXSRG 219

PyMOL of 2f2g

>pdb|1RTW|A Chain A, X-Ray Structure Of Pf1337, A Tena Homologue From Pyrococcus Furiosus. Northeast Structural Genomics Research Consortium (Nesg) Target Pfr34 Length = 220

Back alignment and structure

>pdb|2RD3|A Chain A, Crystal Structure Of Tena Homologue (Hp1287) From Helicobacter Pylori Length = 223

Back alignment and structure

>pdb|3IBX|A Chain A, Crystal Structure Of F47y Variant Of Tena (Hp1287) From Helicobacter Pylori Length = 221

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		239
2f2g_A		221	SEED maturation protein PM36 homolog; TENA_THI-4 d	8e-50
1wwm_A		190	Hypothetical protein TT2028; TENA/THI-4 family, pu	1e-45
1rtw_A		220	Transcriptional activator, putative; PF1337, TENA,	3e-31
2qcx_A		263	Transcriptional activator TENA; UP-DOWN bundle, hy	1e-29
3ibx_A		221	TENA, HP1287, putative thiaminase II; vitamin B1,	1e-28
3mvu_A		226	TENA family transcriptional regulator; TENA/THI-4/	3e-27
1z72_A		225	Transcriptional regulator, putative; structu genom	9e-26
2gm8_A		221	TENA homolog/THI-4 thiaminase; transcription, tran	1e-25
2qzc_A		214	Transcriptional activator TENA-1; heme oxygenase-l	4e-25
1udd_A		226	Transcriptional regulator; helix-bundle, lipid bin	8e-25
3no6_A		248	Transcriptional activator TENA; structural genomic	1e-22
2a2m_A		258	Hypothetical protein BT3146; putative TENA family	6e-17
3rm5_A		550	Hydroxymethylpyrimidine/phosphomethylpyrimidine K	3e-10
1rcw_A		231	CT610, CADD; iron, DI-iron, redox enzyme, metallo	3e-08
3oql_A		262	TENA homolog; transcriptional activator, structura	7e-08
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-06
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04

>2f2g_A SEED maturation protein PM36 homolog; TENA_THI-4 domain, TENA/THI-4/PQQC family, AT3G16990, struct genomics, protein structure initiative; HET: HMH; 2.10A {Arabidopsis thaliana} SCOP: a.132.1.3 PDB: 2q4x_A* Length = 221	Back alignment and structure

 Score =  161 bits (409), Expect = 8e-50
 Identities = 142/227 (62%), Positives = 165/227 (72%), Gaps = 10/227 (4%)

Query: 11  KGGVIDTWLRKHRLIYIGATRHPFILAIRDGTVNYSSFKKWLGQDYIFVREFVAFAASVL 70
           K GVIDTW+ KHR IY  ATRH F+++IRDG+V+ SSF+ WLGQDY+FVR FV F ASVL
Sbjct: 3   KRGVIDTWIDKHRSIYTAATRHAFVVSIRDGSVDLSSFRTWLGQDYLFVRRFVPFVASVL 62

Query: 71  VKAWKESDDSKGDTEVILGGMAGLHDEIAWFKKEASKWGVELSETVPQKANQVYCRFLES 130
           ++A K+S +S  D EV+LGG+A L+DEI WFK+E SKW V+ S  VPQ+ANQ Y RFLE 
Sbjct: 63  IRACKDSGESS-DMEVVLGGIASLNDEIEWFKREGSKWDVDFSTVVPQRANQEYGRFLED 121

Query: 131 LMSPEVDYTVAITVFWAIEAVYQESFAHCLEPDTNTPPELQEVCQRWGNDGFGQYCHSLK 190
           LMS EV Y V +T FWAIEAVYQESFAHCLE    TP EL   C RWGNDGF QYC S+K
Sbjct: 122 LMSSEVKYPVIMTAFWAIEAVYQESFAHCLEDGNKTPVELTGACHRWGNDGFKQYCSSVK 181

Query: 191 KIANRLLEKASDDLIMGKAGDDVLKKAEVELIRVLEHEVEFWNMSRG 237
            IA R LE AS          +VL +AE  L+RVLE EV FW MSRG
Sbjct: 182 NIAERCLENAS---------GEVLGEAEDVLVRVLELEVAFWEMSRG 219

PyMOL of 2f2g

>1wwm_A Hypothetical protein TT2028; TENA/THI-4 family, putative transctiption activator, structu genomics; 2.61A {Thermus thermophilus} SCOP: a.132.1.3 Length = 190	Back alignment and structure

>1rtw_A Transcriptional activator, putative; PF1337, TENA, thiamin, structural genomics, PSI, protein STR initiative; HET: MP5; 2.35A {Pyrococcus furiosus} SCOP: a.132.1.3 Length = 220	Back alignment and structure

>2qcx_A Transcriptional activator TENA; UP-DOWN bundle, hydrolase; HET: PF1; 2.20A {Bacillus subtilis} PDB: 1yak_A* 1yaf_A* 1to9_A* 1tyh_A Length = 263	Back alignment and structure

>3ibx_A TENA, HP1287, putative thiaminase II; vitamin B1, hydrol; 2.40A {Helicobacter pylori} PDB: 2rd3_A Length = 221	Back alignment and structure

>3mvu_A TENA family transcriptional regulator; TENA/THI-4/PQQC family, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.80A {Ruegeria SP} Length = 226	Back alignment and structure

>1z72_A Transcriptional regulator, putative; structu genomics, PSI, protein structure initiative, midwest center structural genomics, MCSG; 1.45A {Streptococcus pneumoniae} SCOP: a.132.1.3 PDB: 2a6b_A Length = 225	Back alignment and structure

>2gm8_A TENA homolog/THI-4 thiaminase; transcription, transferase; HET: HMH; 2.50A {Pyrobaculum aerophilum} SCOP: a.132.1.3 PDB: 2gm7_A* Length = 221	Back alignment and structure

>2qzc_A Transcriptional activator TENA-1; heme oxygenase-like fold, structural genomics, joint center structural genomics, JCSG; 1.50A {Sulfolobus solfataricus P2} Length = 214	Back alignment and structure

>1udd_A Transcriptional regulator; helix-bundle, lipid binding protein; 2.15A {Pyrococcus horikoshii} SCOP: a.132.1.3 Length = 226	Back alignment and structure

>3no6_A Transcriptional activator TENA; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.65A {Staphylococcus epidermidis} Length = 248	Back alignment and structure

>2a2m_A Hypothetical protein BT3146; putative TENA family transcriptional regulator, structural G joint center for structural genomics; 1.88A {Bacteroides thetaiotaomicron} SCOP: a.132.1.3 PDB: 2a2o_A Length = 258	Back alignment and structure

>3rm5_A Hydroxymethylpyrimidine/phosphomethylpyrimidine K THI20; HMP kinase (THID), thiaminase II, transferase; 2.68A {Saccharomyces cerevisiae} Length = 550	Back alignment and structure

>1rcw_A CT610, CADD; iron, DI-iron, redox enzyme, metallo enzyme, oxidoreductase,; 2.50A {Chlamydia trachomatis} SCOP: a.132.1.4 Length = 231	Back alignment and structure

>3oql_A TENA homolog; transcriptional activator, structural genomics, joint center structural genomics, JCSG, protein structure initiative; 2.54A {Pseudomonas syringae PV} Length = 262	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		239
3ibx_A		221	TENA, HP1287, putative thiaminase II; vitamin B1,	100.0
3no6_A		248	Transcriptional activator TENA; structural genomic	100.0
3mvu_A		226	TENA family transcriptional regulator; TENA/THI-4/	100.0
4fn6_A		229	Thiaminase-2, thiaminase II; alpha-helix, vitamin	100.0
2qcx_A		263	Transcriptional activator TENA; UP-DOWN bundle, hy	100.0
2f2g_A		221	SEED maturation protein PM36 homolog; TENA_THI-4 d	100.0
1z72_A		225	Transcriptional regulator, putative; structu genom	100.0
1rtw_A		220	Transcriptional activator, putative; PF1337, TENA,	100.0
2gm8_A		221	TENA homolog/THI-4 thiaminase; transcription, tran	100.0
3rm5_A		550	Hydroxymethylpyrimidine/phosphomethylpyrimidine K	100.0
2qzc_A		214	Transcriptional activator TENA-1; heme oxygenase-l	100.0
1udd_A		226	Transcriptional regulator; helix-bundle, lipid bin	100.0
1wwm_A		190	Hypothetical protein TT2028; TENA/THI-4 family, pu	100.0
2a2m_A		258	Hypothetical protein BT3146; putative TENA family	100.0
3oql_A		262	TENA homolog; transcriptional activator, structura	100.0
1rcw_A		231	CT610, CADD; iron, DI-iron, redox enzyme, metallo	100.0
3dde_A		239	TENA/THI-4 protein, domain of unknown function WI	99.97
3hlx_A		258	Pyrroloquinoline-quinone synthase; PQQC, PQQ biosy	99.96
3bjd_A		332	Putative 3-oxoacyl-(acyl-carrier-protein) synthas;	99.88
3b5o_A		244	CADD-like protein of unknown function; structural	99.27
1wov_A		250	Heme oxygenase 2; HOMO dimer, oxidoreductase; HET:	98.07
1wzd_A		215	Heme oxygenase; electron-transfer, artificial meta	97.97
2q32_A		264	Heme oxygenase 2, HO-2; structural genomics medica	97.89
1n45_A		233	Heme oxygenase 1, HO-1; alpha helices, heme-bindin	97.81
1we1_A		240	Heme oxygenase 1; oxidoreductase; HET: HEM; 2.50A	97.79
1j02_A		267	Heme oxygenase 1; alpha helix, O2-analog bound for	97.69
1sk7_A		198	Hypothetical protein PA-HO; heme oxygenase, heme d	89.64
1j77_A		209	HEMO, heme oxygenase; proximal histidine, distal h	80.92

>3ibx_A TENA, HP1287, putative thiaminase II; vitamin B1, hydrol; 2.40A {Helicobacter pylori} PDB: 2rd3_A	Back alignment and structure

Probab=100.00  E-value=1.9e-55  Score=371.22  Aligned_cols=214  Identities=15%  Similarity=0.191  Sum_probs=197.8

Q ss_pred             ccCchHHHHHHHcHHHHHHhhcCHhHhhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCChhHHHHHHH
Q 026416           10 GKGGVIDTWLRKHRLIYIGATRHPFILAIRDGTVNYSSFKKWLGQDYIFVREFVAFAASVLVKAWKESDDSKGDTEVILG   89 (239)
Q Consensus        10 ~~~~~~~~L~~~~~~~w~~~~~HpFv~~l~~GtL~~~~f~~YL~QD~~yl~~~~r~~a~~~~ka~~~~~~~~~~~~~l~~   89 (239)
                      ..|+|+++|+++++|+|+++++||||++|++||||.++|++||+|||+||.+|+|+++++++|+|+     .+++..++.
T Consensus         3 ~~M~f~~~L~~~~~~~~~~~~~HPFv~~l~~GtL~~~~f~~YL~QD~~yl~~~~r~~a~~~aka~~-----~~~~~~~~~   77 (221)
T 3ibx_A            3 FTMQVSQYLYQNAQSIWGDCISHPFVQGIGRGTLERDKFRFYIIQDYLYLLEYAKVFALGVVKACD-----EAVMREFSN   77 (221)
T ss_dssp             SSCCHHHHHHHHHHHHHHHHHTSHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCS-----HHHHHHHHH
T ss_pred             CcchHHHHHHHhhHHHHHHHHCCHHHHHHHcCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCC-----HHHHHHHHH
Confidence            357899999999999999999999999999999999999999999999999999999999999999     788999999


Q ss_pred             HHhhH-HHHHHHHHHHHHHcCCCCC---CCCCchHhHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHhhccCCCC-
Q 026416           90 GMAGL-HDEIAWFKKEASKWGVELS---ETVPQKANQVYCRFLESLMSPEVDYTVAITVFWAIEAVYQESFAHCLEPDT-  164 (239)
Q Consensus        90 ~~~~~-~~E~~~~~~~~~~~gi~~~---~~~~~pa~~~Y~~~l~~~a~~~~~~~~~l~a~~~c~~~Y~~i~~~~~~~~~-  164 (239)
                      .+..+ .+|+.+|+++++.+||+.+   ..+++|+|.+|++||++++ ..++++++++|++||+|+|.+||+++..... 
T Consensus        78 ~~~~~~~~E~~~h~~~~~~~Gi~~~~~~~~~~~p~~~aY~~~l~~~a-~~~~~~~~~aAl~pc~~~Y~~ig~~l~~~~~~  156 (221)
T 3ibx_A           78 AIQDILNNEMSIHNHYIRELQITQKELQNACPTLANKSYTSYMLAEG-FKGSIKEVAAAVLSCGWSYLVIAQNLSQIPNA  156 (221)
T ss_dssp             HHHHHHSCTTSHHHHHHHHTTCCHHHHHHCCCCHHHHHHHHHHHHHH-HHSCHHHHHHHTHHHHHHHHHHHHHHTCSSST
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCCHHHHhhccCCHHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            88665 5799999999999999974   4789999999999999995 6789999999999999999999999865421 


Q ss_pred             CCCchHHHHhhhcCChHHHHHHHHHHHHHHHHHhhcChhhhcccCcHHHHHHHHHHHHHHHHHHHHhchhhccC
Q 026416          165 NTPPELQEVCQRWGNDGFGQYCHSLKKIANRLLEKASDDLIMGKAGDDVLKKAEVELIRVLEHEVEFWNMSRGT  238 (239)
Q Consensus       165 ~~~~~y~~Wi~~y~s~~f~~~v~~l~~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~~~~E~~Fwd~a~~~  238 (239)
                      +.+++|++||++|+|++|.+.|+.+++++|++++..++         +++++|.++|+++|++|++||||||++
T Consensus       157 ~~~~~y~~WI~~y~~~~f~~~v~~~~~~ld~~~~~~~~---------~~~~~~~~~F~~a~~lE~~Fwd~a~~~  221 (221)
T 3ibx_A          157 LEHAFYGHWIKGYSSKEFQACVNWNINLLDSLTLASSK---------QEIEKLKEIFITTSEYEYLFWDMAYQS  221 (221)
T ss_dssp             TTCTTTHHHHHHTTSHHHHHHHHHHHHHHHHHCTTCCH---------HHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             CCCChHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhCCH---------HHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            23568999999999999999999999999999988888         899999999999999999999999974

PyMOL of 3ibx

>3no6_A Transcriptional activator TENA; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.65A {Staphylococcus epidermidis} SCOP: a.132.1.0	Back alignment and structure

>3mvu_A TENA family transcriptional regulator; TENA/THI-4/PQQC family, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.80A {Ruegeria SP} SCOP: a.132.1.0	Back alignment and structure

>4fn6_A Thiaminase-2, thiaminase II; alpha-helix, vitamin B1, BI-functional enzyme, C of thiamine INTO HMP and THZ; HET: CME; 2.69A {Staphylococcus aureus}	Back alignment and structure

>2qcx_A Transcriptional activator TENA; UP-DOWN bundle, hydrolase; HET: PF1; 2.20A {Bacillus subtilis} PDB: 1yak_A* 1yaf_A* 1to9_A* 1tyh_A	Back alignment and structure

>2f2g_A SEED maturation protein PM36 homolog; TENA_THI-4 domain, TENA/THI-4/PQQC family, AT3G16990, struct genomics, protein structure initiative; HET: HMH; 2.10A {Arabidopsis thaliana} SCOP: a.132.1.3 PDB: 2q4x_A*	Back alignment and structure

>1z72_A Transcriptional regulator, putative; structu genomics, PSI, protein structure initiative, midwest center structural genomics, MCSG; 1.45A {Streptococcus pneumoniae} SCOP: a.132.1.3 PDB: 2a6b_A	Back alignment and structure

>1rtw_A Transcriptional activator, putative; PF1337, TENA, thiamin, structural genomics, PSI, protein STR initiative; HET: MP5; 2.35A {Pyrococcus furiosus} SCOP: a.132.1.3	Back alignment and structure

>2gm8_A TENA homolog/THI-4 thiaminase; transcription, transferase; HET: HMH; 2.50A {Pyrobaculum aerophilum} SCOP: a.132.1.3 PDB: 2gm7_A*	Back alignment and structure

>3rm5_A Hydroxymethylpyrimidine/phosphomethylpyrimidine K THI20; HMP kinase (THID), thiaminase II, transferase; 2.68A {Saccharomyces cerevisiae}	Back alignment and structure

>2qzc_A Transcriptional activator TENA-1; heme oxygenase-like fold, structural genomics, joint center structural genomics, JCSG; 1.50A {Sulfolobus solfataricus P2}	Back alignment and structure

>1udd_A Transcriptional regulator; helix-bundle, lipid binding protein; 2.15A {Pyrococcus horikoshii} SCOP: a.132.1.3	Back alignment and structure

>1wwm_A Hypothetical protein TT2028; TENA/THI-4 family, putative transctiption activator, structu genomics; 2.61A {Thermus thermophilus} SCOP: a.132.1.3	Back alignment and structure

>2a2m_A Hypothetical protein BT3146; putative TENA family transcriptional regulator, structural G joint center for structural genomics; 1.88A {Bacteroides thetaiotaomicron} SCOP: a.132.1.3 PDB: 2a2o_A	Back alignment and structure

>3oql_A TENA homolog; transcriptional activator, structural genomics, joint center structural genomics, JCSG, protein structure initiative; 2.54A {Pseudomonas syringae PV}	Back alignment and structure

>1rcw_A CT610, CADD; iron, DI-iron, redox enzyme, metallo enzyme, oxidoreductase,; 2.50A {Chlamydia trachomatis} SCOP: a.132.1.4	Back alignment and structure

>3dde_A TENA/THI-4 protein, domain of unknown function WI oxygenase-like fold; structural genomics, joint center for structural genomics; HET: MSE PGE; 2.30A {Shewanella denitrificans OS217}	Back alignment and structure

>3hlx_A Pyrroloquinoline-quinone synthase; PQQC, PQQ biosynthesis, oxidase, complex, all helical, oxido; HET: PQQ; 1.30A {Klebsiella pneumoniae subsp} SCOP: a.132.1.4 PDB: 3hml_A* 1otv_A 3hnh_A* 1otw_A*	Back alignment and structure

>3bjd_A Putative 3-oxoacyl-(acyl-carrier-protein) synthas; structural genomics, APC5632, 3-oxoacyl-(acyl-carrier-protei synthase, PSI-2; HET: MSE; 1.85A {Pseudomonas aeruginosa PAO1}	Back alignment and structure

>3b5o_A CADD-like protein of unknown function; structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2, oxidoreductase; HET: MSE; 1.35A {Nostoc punctiforme} PDB: 3b5p_A*	Back alignment and structure

>1wov_A Heme oxygenase 2; HOMO dimer, oxidoreductase; HET: HEM; 1.75A {Synechocystis SP} SCOP: a.132.1.1 PDB: 1wow_A* 1wox_A*	Back alignment and structure

>1wzd_A Heme oxygenase; electron-transfer, artificial metalloprotein; HET: YOK; 1.35A {Corynebacterium diphtheriae} SCOP: a.132.1.1 PDB: 1iw1_A* 1v8x_A* 1iw0_A* 1wzf_A* 1wzg_A* 2z68_A* 3i8r_A* 3moo_A* 1wnw_A* 1wnx_A* 1wnv_A*	Back alignment and structure

>2q32_A Heme oxygenase 2, HO-2; structural genomics medical relevance, structural genomics community request, protein structure in PSI; HET: OXN; 2.40A {Homo sapiens} PDB: 2qpp_A* 2rgz_A*	Back alignment and structure

>1n45_A Heme oxygenase 1, HO-1; alpha helices, heme-binding site, oxidoreductase; HET: HEM; 1.50A {Homo sapiens} SCOP: a.132.1.1 PDB: 1n3u_A* 1ozr_A* 1ozw_A* 1s13_A* 1s8c_A* 1t5p_A* 1twn_A* 1twr_A* 3czy_A* 3hok_A* 3k4f_A* 3tgm_A* 1xjz_A* 1xk3_A* 1xk2_A* 1ozl_A* 1oyk_A* 1oze_A* 1oyl_A* 1xk0_A* ...	Back alignment and structure

>1we1_A Heme oxygenase 1; oxidoreductase; HET: HEM; 2.50A {Synechocystis SP} SCOP: a.132.1.1	Back alignment and structure

>1j02_A Heme oxygenase 1; alpha helix, O2-analog bound form, oxidoreductase; HET: HEM; 1.70A {Rattus norvegicus} SCOP: a.132.1.1 PDB: 1irm_C 1dve_A* 1ix3_A* 1ivj_A* 1ix4_A* 1j2c_A* 1ubb_A* 1ulx_A* 1vgi_A* 2dy5_A* 2e7e_A* 2zvu_A* 1dvg_A* 3i9t_A* 3i9u_A*	Back alignment and structure

>1sk7_A Hypothetical protein PA-HO; heme oxygenase, heme degradation, regioselectivity, oxidored; HET: HEM; 1.60A {Pseudomonas aeruginosa} SCOP: a.132.1.2	Back alignment and structure

>1j77_A HEMO, heme oxygenase; proximal histidine, distal helix, oxidoreductase; HET: HEM; 1.50A {Neisseria meningitidis} SCOP: a.132.1.2 PDB: 1p3t_A* 1p3u_A* 1p3v_A*	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		239
d2f2ga1		215	a.132.1.3 (A:5-219) Seed maturation protein-relate	2e-44
d1wwma1		180	a.132.1.3 (A:11-190) Hypothetical protein TTHA0169	5e-32
d1rtwa_		206	a.132.1.3 (A:) Putative transcriptional activator	1e-29
d1z72a1		217	a.132.1.3 (A:4-220) Putative transcriptional regul	3e-28
d1to9a_		225	a.132.1.3 (A:) Transcriptional activator TenA {Bac	8e-27
d1udda_		215	a.132.1.3 (A:) Hypothetical transcriptional regula	1e-26
d2gm8a1		211	a.132.1.3 (A:2-212) TenA homolog PAE0170 {Archaeon	1e-24
d2a2ma1		231	a.132.1.3 (A:10-240) Hypothetical protein BT3146 {	2e-24
d1rcwa_		213	a.132.1.4 (A:) Hypothetical protein CT610 {Chlamyd	4e-13
d1otva_		254	a.132.1.4 (A:) Coenzyme PQQ synthesis protein C, P	1e-05

>d2f2ga1 a.132.1.3 (A:5-219) Seed maturation protein-related At3g16990 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 215	Back information, alignment and structure


class: All alpha proteins
fold: Heme oxygenase-like
superfamily: Heme oxygenase-like
family: TENA/THI-4
domain: Seed maturation protein-related At3g16990
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  146 bits (369), Expect = 2e-44
 Identities = 141/225 (62%), Positives = 164/225 (72%), Gaps = 10/225 (4%)

Query: 13  GVIDTWLRKHRLIYIGATRHPFILAIRDGTVNYSSFKKWLGQDYIFVREFVAFAASVLVK 72
           GVIDTW+ KHR IY  ATRH F+++IRDG+V+ SSF+ WLGQDY+FVR FV F ASVL++
Sbjct: 1   GVIDTWIDKHRSIYTAATRHAFVVSIRDGSVDLSSFRTWLGQDYLFVRRFVPFVASVLIR 60

Query: 73  AWKESDDSKGDTEVILGGMAGLHDEIAWFKKEASKWGVELSETVPQKANQVYCRFLESLM 132
           A K+S +S  D EV+LGG+A L+DEI WFK+E SKW V+ S  VPQ+ANQ Y RFLE LM
Sbjct: 61  ACKDSGESS-DMEVVLGGIASLNDEIEWFKREGSKWDVDFSTVVPQRANQEYGRFLEDLM 119

Query: 133 SPEVDYTVAITVFWAIEAVYQESFAHCLEPDTNTPPELQEVCQRWGNDGFGQYCHSLKKI 192
           S EV Y V +T FWAIEAVYQESFAHCLE    TP EL   C RWGNDGF QYC S+K I
Sbjct: 120 SSEVKYPVIMTAFWAIEAVYQESFAHCLEDGNKTPVELTGACHRWGNDGFKQYCSSVKNI 179

Query: 193 ANRLLEKASDDLIMGKAGDDVLKKAEVELIRVLEHEVEFWNMSRG 237
           A R LE AS          +VL +AE  L+RVLE EV FW MSRG
Sbjct: 180 AERCLENAS---------GEVLGEAEDVLVRVLELEVAFWEMSRG 215

PyMOL of d2f2ga1

>d1wwma1 a.132.1.3 (A:11-190) Hypothetical protein TTHA0169 (TT2028) {Thermus thermophilus [TaxId: 274]} Length = 180	Back information, alignment and structure

>d1rtwa_ a.132.1.3 (A:) Putative transcriptional activator PF1337 {Archaeon Pyrococcus furiosus [TaxId: 2261]} Length = 206	Back information, alignment and structure

>d1z72a1 a.132.1.3 (A:4-220) Putative transcriptional regulator SP0716 (SPr0628) {Streptococcus pneumoniae [TaxId: 1313]} Length = 217	Back information, alignment and structure

>d1to9a_ a.132.1.3 (A:) Transcriptional activator TenA {Bacillus subtilis [TaxId: 1423]} Length = 225	Back information, alignment and structure

>d1udda_ a.132.1.3 (A:) Hypothetical transcriptional regulator PH1161 {Pyrococcus horikoshii [TaxId: 53953]} Length = 215	Back information, alignment and structure

>d2gm8a1 a.132.1.3 (A:2-212) TenA homolog PAE0170 {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Length = 211	Back information, alignment and structure

>d2a2ma1 a.132.1.3 (A:10-240) Hypothetical protein BT3146 {Bacteroides thetaiotaomicron [TaxId: 818]} Length = 231	Back information, alignment and structure

>d1rcwa_ a.132.1.4 (A:) Hypothetical protein CT610 {Chlamydia trachomatis [TaxId: 813]} Length = 213	Back information, alignment and structure

>d1otva_ a.132.1.4 (A:) Coenzyme PQQ synthesis protein C, PqqC {Klebsiella pneumoniae [TaxId: 573]} Length = 254	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		239
d2f2ga1		215	Seed maturation protein-related At3g16990 {Thale c	100.0
d1to9a_		225	Transcriptional activator TenA {Bacillus subtilis	100.0
d1rtwa_		206	Putative transcriptional activator PF1337 {Archaeo	100.0
d1udda_		215	Hypothetical transcriptional regulator PH1161 {Pyr	100.0
d2gm8a1		211	TenA homolog PAE0170 {Archaeon Pyrobaculum aerophi	100.0
d2a2ma1		231	Hypothetical protein BT3146 {Bacteroides thetaiota	100.0
d1z72a1		217	Putative transcriptional regulator SP0716 (SPr0628	100.0
d1wwma1		180	Hypothetical protein TTHA0169 (TT2028) {Thermus th	100.0
d1rcwa_		213	Hypothetical protein CT610 {Chlamydia trachomatis	99.96
d1otva_		254	Coenzyme PQQ synthesis protein C, PqqC {Klebsiella	99.87
d1wzda1		207	Heme oxygenase HmuO {Corynebacterium diphtheriae [	98.26
d1n45a_		214	Heme oxygenase-1 (HO-1) {Human (Homo sapiens) [Tax	98.16
d1wova1		249	Heme oxygenase 2 {Synechocystis sp. pcc 6803 [TaxI	97.76
d1we1a_		222	Heme oxygenase-1 (HO-1) {Synechocystis sp. [TaxId:	97.67

>d2f2ga1 a.132.1.3 (A:5-219) Seed maturation protein-related At3g16990 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}	Back information, alignment and structure

class: All alpha proteins
fold: Heme oxygenase-like
superfamily: Heme oxygenase-like
family: TENA/THI-4
domain: Seed maturation protein-related At3g16990
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=6.7e-53  Score=351.43  Aligned_cols=215  Identities=65%  Similarity=1.134  Sum_probs=191.6

Q ss_pred             chHHHHHHHcHHHHHHhhcCHhHhhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCChhHHHHHHHHHh
Q 026416           13 GVIDTWLRKHRLIYIGATRHPFILAIRDGTVNYSSFKKWLGQDYIFVREFVAFAASVLVKAWKESDDSKGDTEVILGGMA   92 (239)
Q Consensus        13 ~~~~~L~~~~~~~w~~~~~HpFv~~l~~GtL~~~~f~~YL~QD~~yl~~~~r~~a~~~~ka~~~~~~~~~~~~~l~~~~~   92 (239)
                      +++++|+++++++|+++++||||++|++||||.++|++||+|||+||.+|+|+++++++|+|+.+.. ...+..+...+.
T Consensus         1 g~~d~l~~~~~~~w~~~~~HPFv~~l~~GtL~~e~f~~Yl~QDy~yl~~~~r~~a~~~~ka~~~~~~-~~~~~~l~~~~~   79 (215)
T d2f2ga1           1 GVIDTWIDKHRSIYTAATRHAFVVSIRDGSVDLSSFRTWLGQDYLFVRRFVPFVASVLIRACKDSGE-SSDMEVVLGGIA   79 (215)
T ss_dssp             CHHHHHHHHTHHHHHHHTSCSCCCEEETTEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSC-TTHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHHCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHH-HHHHHHHHHHHH
Confidence            5799999999999999999999999999999999999999999999999999999999999996552 122333333334


Q ss_pred             hHHHHHHHHHHHHHHcCCCCCCCCCchHhHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHhhccCCCCCCCchHHH
Q 026416           93 GLHDEIAWFKKEASKWGVELSETVPQKANQVYCRFLESLMSPEVDYTVAITVFWAIEAVYQESFAHCLEPDTNTPPELQE  172 (239)
Q Consensus        93 ~~~~E~~~~~~~~~~~gi~~~~~~~~pa~~~Y~~~l~~~a~~~~~~~~~l~a~~~c~~~Y~~i~~~~~~~~~~~~~~y~~  172 (239)
                      ...+|+.+|.++++.+|++.+..++.|+|.+|++||++++...++++++++|++||+|+|.+||+.+.....+.+++|++
T Consensus        80 ~~~~e~~~~~~~~~~~~~~~~~~~~~p~~~~y~~~l~~~~~~~~~~~~~l~al~pc~~~Y~~~~~~~~~~~~~~~~~y~~  159 (215)
T d2f2ga1          80 SLNDEIEWFKREGSKWDVDFSTVVPQRANQEYGRFLEDLMSSEVKYPVIMTAFWAIEAVYQESFAHCLEDGNKTPVELTG  159 (215)
T ss_dssp             HHHHHHHHHHHHHHHTTCCGGGCCCCHHHHHHHHHHHHTTSTTSCHHHHHHHHHHHHHHHHHHTTTHHHHHHTSSSCCCH
T ss_pred             HHHHHHHHHHHHHHhcCccHHhcccchHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHhccCcCcchHHH
Confidence            45679999999999999999888999999999999999854568999999999999999999998775433345568999


Q ss_pred             HhhhcCChHHHHHHHHHHHHHHHHHhhcChhhhcccCcHHHHHHHHHHHHHHHHHHHHhchhhcc
Q 026416          173 VCQRWGNDGFGQYCHSLKKIANRLLEKASDDLIMGKAGDDVLKKAEVELIRVLEHEVEFWNMSRG  237 (239)
Q Consensus       173 Wi~~y~s~~f~~~v~~l~~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~~~~E~~Fwd~a~~  237 (239)
                      ||+.|++++|.+.|.++++++|++++..++         +++++++++|+++|++|++||||||.
T Consensus       160 Wi~~y~~~~f~~~v~~~~~~ld~~~~~~~~---------~~~~~~~~~F~~~~~lE~~Fwd~Ay~  215 (215)
T d2f2ga1         160 ACHRWGNDGFKQYCSSVKNIAERCLENASG---------EVLGEAEDVLVRVLELEVAFWEMSRG  215 (215)
T ss_dssp             HHHHHSSHHHHHHHHHHHHHHHHHHHTCCH---------HHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred             HHHHhCCccHHHHHHHHHHHHHHHHHhCCH---------HHHHHHHHHHHHHHHHHHHHHhhccC
Confidence            999999999999999999999999999988         89999999999999999999999985

PyMOL of d2f2ga1

>d1to9a_ a.132.1.3 (A:) Transcriptional activator TenA {Bacillus subtilis [TaxId: 1423]}	Back information, alignment and structure

>d1rtwa_ a.132.1.3 (A:) Putative transcriptional activator PF1337 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	Back information, alignment and structure

>d1udda_ a.132.1.3 (A:) Hypothetical transcriptional regulator PH1161 {Pyrococcus horikoshii [TaxId: 53953]}	Back information, alignment and structure

>d2gm8a1 a.132.1.3 (A:2-212) TenA homolog PAE0170 {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}	Back information, alignment and structure

>d2a2ma1 a.132.1.3 (A:10-240) Hypothetical protein BT3146 {Bacteroides thetaiotaomicron [TaxId: 818]}	Back information, alignment and structure

>d1z72a1 a.132.1.3 (A:4-220) Putative transcriptional regulator SP0716 (SPr0628) {Streptococcus pneumoniae [TaxId: 1313]}	Back information, alignment and structure

>d1wwma1 a.132.1.3 (A:11-190) Hypothetical protein TTHA0169 (TT2028) {Thermus thermophilus [TaxId: 274]}	Back information, alignment and structure

>d1rcwa_ a.132.1.4 (A:) Hypothetical protein CT610 {Chlamydia trachomatis [TaxId: 813]}	Back information, alignment and structure

>d1otva_ a.132.1.4 (A:) Coenzyme PQQ synthesis protein C, PqqC {Klebsiella pneumoniae [TaxId: 573]}	Back information, alignment and structure

>d1wzda1 a.132.1.1 (A:7-213) Heme oxygenase HmuO {Corynebacterium diphtheriae [TaxId: 1717]}	Back information, alignment and structure

>d1n45a_ a.132.1.1 (A:) Heme oxygenase-1 (HO-1) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1wova1 a.132.1.1 (A:2-250) Heme oxygenase 2 {Synechocystis sp. pcc 6803 [TaxId: 1148]}	Back information, alignment and structure

>d1we1a_ a.132.1.1 (A:) Heme oxygenase-1 (HO-1) {Synechocystis sp. [TaxId: 1143]}	Back information, alignment and structure