Citrus Sinensis ID: 026420

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------24
Protein Sequence
MARFRNSKKKGFVKSFVKKKQPTVDHITGDKIPKSFVFSRGKLPGPLRQLEMDLRKLMLPHTALNLKEKKRNNLKDFLNVAGPMGVTHFLMLSKTESAPYLRVARTPQGPTLTFKIHEYSLAVDVAQSQLRPRCPQDLFKTSPLIVLSGFGTGDQHLKLTTIMFQNIFPAIDINTVKLSTCQRIVLLNYNKDTKLIDFRHYSIRLQPVGVSRRLRKFVQSHQVPDLRSLQDVSDFVTK
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccEEEEccccccccHHHHHHHHHHHccccccHHHHccccccHHHHHHHHccccccEEEEEEEcccccEEEEEEcccccEEEEEEcccEEHHHHHHHcccccccccccccccEEEEccccccccHHHHHHHHHHHccccccccccccccccEEEEEEEEccccEEEEEEEEEEEEEccccHHHHHHHHHcccccccccccHHHHHcc
Secondary Structure Prediction (SSPRO)
cccHHccccccccccHHHcccccccHHHHcccccEEEEEcccccHHHHHHHHHHHHHHcHHHHHHHHHHHHcccHHHHHEccccccEEEEEEEccccccEEEEEEcccccEEEEEEEcccHHHHHHHHHccccccHHHcccccEEEEcccccccHHHHHHHHHHHHccccccccccccccEEEEEEEEccccccEEEEEEEEEEEEEccccHHHHHHHHHccccccccHHHHHHHHcc
Coil and Loop (DISEMBL)
marfrnskkkgFVKSFvkkkqptvdhitgdkipksfvfsrgklpgplrQLEMDLRKLMLPHTALNLKEKKRNNLKDFlnvagpmgvTHFLMLSktesapylrvartpqgptltfkIHEYSLAVDVaqsqlrprcpqdlfktsplivlsgfgtgdqhLKLTTIMFQnifpaidintvklsTCQRIVLLnynkdtklidfrhysirlqpvgvSRRLRKFVqshqvpdlrslqdvsdfvtk
Flexible Loop (DISEMBL)
marfrnskkkgfvksfvkkkqptvdhitgdkipksfvfsrgklpgpLRQLEMDLRKLMLPHTALNLKEKKRNNLKDFLNVAGPMGVTHFLMLSKTESAPYLRVARTPQGPTLTFKIHEYSLAVDVAQSQLRPRCPQDLFKTSPLIVLSGFGTGDQHLKLTTIMFQNIFPAIDINTVKLSTCQRIVLLnynkdtklidfRHYSIRLQPVGVSRRLRKFvqshqvpdlrslqdvsdfvtk
Low Complexity Region (SEG)
MARFRNskkkgfvksfvkkkQPTVDHITGDKIPKSFVFSRGKLPGPLRQLEMDLRKLMLPHTAlnlkekkrnnlkDFLNVAGPMGVTHFLMLSKTESAPYLRVARTPQGPTLTFKIHEYSLAVDVAQSQLRPRCPQDLFKTSPLIVLSGFGTGDQHLKLTTIMFQNIFPAIDINTVKLSTCQRIVLLNYNKDTKLIDFRHYSIRLQPVGVSRRLRKFVQSHQVPDLRSLQDVSDFVTK
Disordered region (IsUnstruct)
*************************HITGDKIPKSFVFSRGKLPGPLRQLEMDLRKLMLPHTALNLKEKKRNNLKDFLNVAGPMGVTHFLMLSKTESAPYLRVARTPQGPTLTFKIHEYSLAVDVAQSQLRPRCPQDLFKTSPLIVLSGFGTGDQHLKLTTIMFQNIFPAIDINTVKLSTCQRIVLLNYNKDTKLIDFRHYSIRLQPVGVSRRLRKFVQ*******************
Disordered Region (DISOPRED)
*********************************KSFVFSRGKLPGPLRQLEMDLRKLMLPHTALNLKEKKRNNLKDFLNVAGPMGVTHFLMLSKTESAPYLRVARTPQGPTLTFKIHEYSLAVDVAQ************KTSPLIVLSGFGTGDQHLKLTTIMFQNIFPAIDI**VKLSTCQRIVLLNYNKDTKLIDFRHYSIRLQPVGVSRRLRKFVQSHQVPDLRSLQDVSDFVTK
Disordered Region (DISEMBL)
************VKSFVKKKQPTVDHITGDKIPKSFVFSRGKLPGPLRQLEMDLRKLMLPHTALNLKEKKRNNLKDFLNVAGPMGVTHFLMLSKTESAPYLRVARTPQGPTLTFKIHEYSLAVDVAQSQLRPRCPQDLFKTSPLIVLSGFGTGDQHLKLTTIMFQNIFPAIDINTVKLSTCQRIVLLNYNKDTKLIDFRHYSIRLQPVGVSRRLRKFVQSHQVPDLRSLQ********
Disordered Region (DISPRO)
*****************************DKIPKSFVFSRGKLPGPLRQLEMDLRKLMLPHTALNLKEKKRNNLKDFLNVAGPMGVTHFLMLSKTESAPYLRVARTPQGPTLTFKIHEYSLAVDVAQSQLRPRCPQDLFKTSPLIVLSGFGTGDQHLKLTTIMFQNIFPAIDINTVKLSTCQRIVLLNYNKDTKLIDFRHYSIRLQPVGVSRRLRKFVQSHQVPDLRSLQDVSDFVTK
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MARFRNSKKKGFVKSFVKKKQPTVDHITGDKIPKSFVFSRGKLPGPLRQLEMDLRKLMLPHTALNLKEKKRNNLKDFLNVAGPMGVTHFLMLSKTESAPYLRVARTPQGPTLTFKIHEYSLAVDVAQSQLRPRCPQDLFKTSPLIVLSGFGTGDQHLKLTTIMFQNIFPAIDINTVKLSTCQRIVLLNYNKDTKLIDFRHYSIRLQPVGVSRRLRKFVQSHQVPDLRSLQDVSDFVTK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	238	2.2.26 [Sep-21-2011]
Q9ASU7	345	Peter Pan-like protein OS	yes	no	1.0	0.689	0.815	1e-111
Q91YU8	470	Suppressor of SWI4 1 homo	yes	no	0.857	0.434	0.478	1e-52
Q9NQ55	473	Suppressor of SWI4 1 homo	no	no	0.857	0.431	0.478	1e-51
Q54N44	426	Peter Pan-like protein OS	yes	no	0.857	0.478	0.443	3e-51
Q5REM3	473	Suppressor of SWI4 1 homo	yes	no	0.857	0.431	0.473	7e-51
O14206	389	Brix domain-containing pr	yes	no	0.945	0.578	0.413	1e-43
Q9VDE5	460	Protein Peter pan OS=Dros	yes	no	0.869	0.45	0.408	1e-42
Q12153	453	Ribosome biogenesis prote	yes	no	0.861	0.452	0.386	1e-35
P38789	453	Ribosome biogenesis prote	no	no	0.861	0.452	0.382	1e-35

>sp|Q9ASU7|PPAN_ARATH Peter Pan-like protein OS=Arabidopsis thaliana GN=PPAN PE=1 SV=1

 Score =  402 bits (1032), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 195/239 (81%), Positives = 216/239 (90%), Gaps = 1/239 (0%)

Query: 1   MARFRNSKKKGFV-KSFVKKKQPTVDHITGDKIPKSFVFSRGKLPGPLRQLEMDLRKLML 59
           M RF+N+KK   + K   KK Q  V H+TGDKIPKSFVFSR KL GP++QL+MDLRKLML
Sbjct: 1   MGRFKNNKKSRVIGKPIAKKNQEDVSHVTGDKIPKSFVFSRMKLAGPVKQLQMDLRKLML 60

Query: 60  PHTALNLKEKKRNNLKDFLNVAGPMGVTHFLMLSKTESAPYLRVARTPQGPTLTFKIHEY 119
           P+TAL+LKEKKRN L+DFLNV+GPMGVTHFLMLSKT S+  LRVARTPQGPTLTFKIH+Y
Sbjct: 61  PYTALSLKEKKRNTLRDFLNVSGPMGVTHFLMLSKTASSLSLRVARTPQGPTLTFKIHQY 120

Query: 120 SLAVDVAQSQLRPRCPQDLFKTSPLIVLSGFGTGDQHLKLTTIMFQNIFPAIDINTVKLS 179
           SLA D+AQSQLRPRCPQDLFK+ PLIVLSGFG+ + HLKL TIMFQNIFPAIDINTVKLS
Sbjct: 121 SLASDIAQSQLRPRCPQDLFKSPPLIVLSGFGSQELHLKLATIMFQNIFPAIDINTVKLS 180

Query: 180 TCQRIVLLNYNKDTKLIDFRHYSIRLQPVGVSRRLRKFVQSHQVPDLRSLQDVSDFVTK 238
           TCQR+VLLNYNKDTKLIDFRHYSIRLQPVGVSRR+RKFVQ+HQVPDLR+LQDVSDFVTK
Sbjct: 181 TCQRLVLLNYNKDTKLIDFRHYSIRLQPVGVSRRIRKFVQNHQVPDLRNLQDVSDFVTK 239

May play a role in cell growth, differentiation and cell cycle progression.
Arabidopsis thaliana (taxid: 3702)

>sp|Q91YU8|SSF1_MOUSE Suppressor of SWI4 1 homolog OS=Mus musculus GN=Ppan PE=2 SV=2

 Score =  206 bits (523), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 98/205 (47%), Positives = 149/205 (72%), Gaps = 1/205 (0%)

Query: 33  PKSFVFSRGKLPGPLRQLEMDLRKLMLPHTALNLKEKKRNNLKDFLNVAGPMGVTHFLML 92
           P SFVF+RG+    +RQL +D+R++M P TA  L+ +K+N+LKD + VAGP+GVTHFL+L
Sbjct: 29  PHSFVFTRGRAGRNVRQLSLDVRRVMEPLTATRLQVRKKNSLKDCVAVAGPLGVTHFLIL 88

Query: 93  SKTESAPYLRVARTPQGPTLTFKIHEYSLAVDVAQSQLRPRCPQDLFKTSPLIVLSGFGT 152
           +KT+++ YL++ R P GPTLTF+I +Y+L  DV  S  R R  +  F   PL+VL+ FG 
Sbjct: 89  TKTDNSVYLKLMRLPGGPTLTFQISKYTLIRDVVSSLRRHRMHEQQFNHPPLLVLNSFGP 148

Query: 153 GDQHLKLTTIMFQNIFPAIDINTVKLSTCQRIVLLNYNKDTKLIDFRHYSIRLQPVGVSR 212
              H+KL   MFQN+FP+I+++TV L+T +R +L+NYN D++ +DFRHYS+++ PVG SR
Sbjct: 149 QGMHIKLMATMFQNLFPSINVHTVNLNTIKRCLLINYNPDSQELDFRHYSVKVVPVGASR 208

Query: 213 RLRKFVQSHQVPDLRSLQDVSDFVT 237
            ++K +Q  + P++  LQD+S+ + 
Sbjct: 209 GMKKLLQE-KFPNMSRLQDISELLA 232

May have a role in cell growth.

Mus musculus (taxid: 10090)

>sp|Q9NQ55|SSF1_HUMAN Suppressor of SWI4 1 homolog OS=Homo sapiens GN=PPAN PE=1 SV=1

 Score =  202 bits (515), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 98/205 (47%), Positives = 145/205 (70%), Gaps = 1/205 (0%)

Query: 33  PKSFVFSRGKLPGPLRQLEMDLRKLMLPHTALNLKEKKRNNLKDFLNVAGPMGVTHFLML 92
           P SFVF+RG     +RQL +D+R++M P TA  L+ +K+N+LKD + VAGP+GVTHFL+L
Sbjct: 29  PHSFVFTRGCTGRNIRQLSLDVRRVMEPLTASRLQVRKKNSLKDCVAVAGPLGVTHFLIL 88

Query: 93  SKTESAPYLRVARTPQGPTLTFKIHEYSLAVDVAQSQLRPRCPQDLFKTSPLIVLSGFGT 152
           SKTE+  Y ++ R P GPTLTF++ +YSL  DV  S  R R  +  F   PL+VL+ FG 
Sbjct: 89  SKTETNVYFKLMRLPGGPTLTFQVKKYSLVRDVVSSLRRHRMHEQQFAHPPLLVLNSFGP 148

Query: 153 GDQHLKLTTIMFQNIFPAIDINTVKLSTCQRIVLLNYNKDTKLIDFRHYSIRLQPVGVSR 212
              H+KL   MFQN+FP+I+++ V L+T +R +L++YN D++ +DFRHYSI++ PVG SR
Sbjct: 149 HGMHVKLMATMFQNLFPSINVHKVNLNTIKRCLLIDYNPDSQELDFRHYSIKVVPVGASR 208

Query: 213 RLRKFVQSHQVPDLRSLQDVSDFVT 237
            ++K +Q  + P++  LQD+S+ + 
Sbjct: 209 GMKKLLQ-EKFPNMSRLQDISELLA 232

May have a role in cell growth.

Homo sapiens (taxid: 9606)

>sp|Q54N44|PPAN_DICDI Peter Pan-like protein OS=Dictyostelium discoideum GN=ppan PE=3 SV=1

 Score =  201 bits (512), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 91/205 (44%), Positives = 143/205 (69%), Gaps = 1/205 (0%)

Query: 32  IPKSFVFSRGKLPGPLRQLEMDLRKLMLPHTALNLKEKKRNNLKDFLNVAGPMGVTHFLM 91
           I KS V+ RG     +++L  + R++M P+TA  L+E   N  KDF+N+A   GV+H + 
Sbjct: 45  ISKSIVYKRGDCNKGIKKLVKEFRQVMEPYTATKLQETSDNTTKDFVNIAAHYGVSHLVG 104

Query: 92  LSKTESAPYLRVARTPQGPTLTFKIHEYSLAVDVAQSQLRPRCPQDLFKTSPLIVLSGFG 151
            S T+   Y+ +AR P+GPT TFKI EYS   DVA++++RP   +  +  SPL+VL+GF 
Sbjct: 105 FSSTDIGSYMAMARLPKGPTTTFKIQEYSFQRDVAKAKIRPTSFEKSYLNSPLVVLNGFT 164

Query: 152 TGDQHLKLTTIMFQNIFPAIDINTVKLSTCQRIVLLNYNKDTKLIDFRHYSIRLQPVGVS 211
            G  HL++   M Q++FP+I++ T+KLSTC+R+VL NYNK+T  ++FRHY+I++  VGV+
Sbjct: 165 RGTPHLEMVQNMVQSLFPSINVYTLKLSTCKRVVLFNYNKETDNVEFRHYAIKVSNVGVN 224

Query: 212 RRLRKFVQSHQVPDLRSLQDVSDFV 236
           R +++ +QS ++PD+ +L D+SD+V
Sbjct: 225 RSIKRIIQS-KIPDISNLGDISDYV 248

Dictyostelium discoideum (taxid: 44689)

>sp|Q5REM3|SSF1_PONAB Suppressor of SWI4 1 homolog OS=Pongo abelii GN=PPAN PE=2 SV=1

 Score =  200 bits (509), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 97/205 (47%), Positives = 144/205 (70%), Gaps = 1/205 (0%)

Query: 33  PKSFVFSRGKLPGPLRQLEMDLRKLMLPHTALNLKEKKRNNLKDFLNVAGPMGVTHFLML 92
           P SFVF+RG     +RQL +D+R++M P TA  L+ +K+N+LKD + VAGP+GVTHFL+L
Sbjct: 29  PHSFVFTRGCTGRNIRQLSLDVRRVMEPLTASRLQVRKKNSLKDCVAVAGPLGVTHFLIL 88

Query: 93  SKTESAPYLRVARTPQGPTLTFKIHEYSLAVDVAQSQLRPRCPQDLFKTSPLIVLSGFGT 152
           SKTE+  Y ++   P GPTLTF++ +YSL  DV  S  R R  +  F   PL+VL+ FG 
Sbjct: 89  SKTETNIYFKLMHLPGGPTLTFQVKKYSLVRDVVSSLRRHRMHEQQFAYPPLLVLNSFGP 148

Query: 153 GDQHLKLTTIMFQNIFPAIDINTVKLSTCQRIVLLNYNKDTKLIDFRHYSIRLQPVGVSR 212
              H+KL   MFQN+FP+I+++ V L+T +R +L++YN D++ +DFRHYSI++ PVG SR
Sbjct: 149 HGMHVKLMATMFQNLFPSINVHKVNLNTIKRCLLIDYNHDSQELDFRHYSIKVVPVGASR 208

Query: 213 RLRKFVQSHQVPDLRSLQDVSDFVT 237
            ++K +Q  + P++  LQD+S+ + 
Sbjct: 209 GMKKLLQE-KFPNMSRLQDISELLA 232

May have a role in cell growth.

Pongo abelii (taxid: 9601)

>sp|O14206|YDD3_SCHPO Brix domain-containing protein C1B9.03c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC1B9.03c PE=1 SV=2

 Score =  176 bits (447), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 98/237 (41%), Positives = 143/237 (60%), Gaps = 12/237 (5%)

Query: 11  GFVKSFVKKK-QPTVDHITGDKIPKSFVFSRG--KLPGPLRQLEMDLRKLMLPHTALNLK 67
           G  K  VKK+     D I    IPKS V   G  ++   L  L  DLR +M PHTA+ LK
Sbjct: 3   GIGKKRVKKRTHLKADPIQEAAIPKSMVIRSGASEVGRSLSLLTRDLRHMMEPHTAIRLK 62

Query: 68  EKKRNNLKDFLNVAGPMGVTHFLMLSKTESAPYLRVARTPQGPTLTFKIHEYSLAVDVAQ 127
           E+K N +KD+L +AGP+GVTH L+LS+T++   LR+ R P+GP+L F+IHEY L  DV +
Sbjct: 63  ERKANKIKDYLTMAGPLGVTHLLVLSRTDNNANLRIIRAPRGPSLHFRIHEYMLNKDVRR 122

Query: 128 SQLRPRCPQDLFKTSPLIVLSGFGTGDQ----HLKLTTIMFQNIFPAIDINTVKLSTCQR 183
            Q  P+ P   F T PL+V++ F         H  L T  FQN+FP I +    +++ +R
Sbjct: 123 LQKNPKSPTTEFLTPPLLVMNHFNQNSSKDSPHEALLTTTFQNMFPPISVQHTNINSVKR 182

Query: 184 IVLLNYNKDTKLIDFRHYSIRLQPVGVSRRLRKFVQSHQ----VPDLRSLQDVSDFV 236
           ++LLN  +D   ID RH+ I  +PVG+SR +R  ++  +    +PDL +++D+SD+V
Sbjct: 183 VLLLN-RRDDGYIDLRHFIISTKPVGISRPIRHLLKGEKKDSDIPDLHNVRDISDYV 238

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q9VDE5|PPAN_DROME Protein Peter pan OS=Drosophila melanogaster GN=ppan PE=1 SV=1

 Score =  172 bits (437), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 85/208 (40%), Positives = 133/208 (63%), Gaps = 1/208 (0%)

Query: 31  KIPKSFVFSRGKLPGPLRQLEMDLRKLMLPHTALNLKEKKRNNLKDFLNVAGPMGVTHFL 90
           + P SFV  RG     +  L +D R++M P TA NL+EK+ N +KDF++++    V+H  
Sbjct: 26  EAPHSFVIHRGLACPYITDLTLDFRRIMEPFTASNLREKRMNRIKDFVSLSSFFHVSHMG 85

Query: 91  MLSKTESAPYLRVARTPQGPTLTFKIHEYSLAVDVAQSQLRPRCPQDLFKTSPLIVLSGF 150
           + +K  +    +V R P+GP+LTFK+H+++LA DV     +     D FK +PL++++ F
Sbjct: 86  IFNKASTQLSFKVVRLPRGPSLTFKVHQFTLARDVISLSKKQMIDNDHFKHAPLVIMNNF 145

Query: 151 GTGDQHLKLTTIMFQNIFPAIDINTVKLSTCQRIVLLNYNKDTKLIDFRHYSIRLQPVGV 210
               +HLKL    FQN+FP+I++ TV + T +R VL +YN DTKL++ RHYS+++ PVG+
Sbjct: 146 SGDGKHLKLMATTFQNMFPSINLATVNIGTIRRCVLFSYNPDTKLVEMRHYSVQVVPVGL 205

Query: 211 SRRLRKFVQSHQVPDLRSLQDVSDFVTK 238
            R ++K V+   VP+L    +V DFVTK
Sbjct: 206 KRAVQKIVKG-TVPNLGKCNEVVDFVTK 232

Required for initiation of larval growth and normal mitotic growth but is not absolutely required for general biosynthesis or DNA replication. Required for progression of normal oogenesis and maturation of some imaginal tissues into adult structures.

Drosophila melanogaster (taxid: 7227)

>sp|Q12153|SSF2_YEAST Ribosome biogenesis protein SSF2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SSF2 PE=1 SV=1

 Score =  150 bits (378), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 87/225 (38%), Positives = 132/225 (58%), Gaps = 20/225 (8%)

Query: 32  IPKSFVFSRGKLP---GPLRQLEMDLRKLMLPHTALNLKEKKRNNLKDFLNVAGPMGVTH 88
           IPKS V   G+       L QL  D R++M PHTA+ LKE+K N LKDF+ + GP+GVTH
Sbjct: 22  IPKSMVIRVGQTSLANHSLNQLVKDFRQIMQPHTAVKLKERKSNKLKDFVVMCGPLGVTH 81

Query: 89  FLMLSKTESAP--YLRVARTPQGPTLTFKIHEYSLAVDVAQSQLRPRC-PQDLFKTSPLI 145
             M +++E      L++ARTPQGPT+TF++ +YSL  D+ +   RP+    D     PL+
Sbjct: 82  LFMFTQSEKTGNVSLKIARTPQGPTVTFQVLDYSLGRDIKKFLKRPKSLNNDDVLNPPLL 141

Query: 146 VLSGFGTG------DQHLKLTTI---MFQNIFPAIDINTVKLSTCQRIVLLNYNKDTKLI 196
           VL+GF T       DQ + +  +   MFQNIFP ++     L++ +RI ++N +++T  I
Sbjct: 142 VLNGFSTSKRSDEDDQDVNVEKVIVSMFQNIFPPLNPARTSLNSIKRIFMINKDRETGEI 201

Query: 197 DFRHYSIRLQPVGVSRRLRKFVQ-----SHQVPDLRSLQDVSDFV 236
             RHY I ++ V +SR L++  +     S  VP+L   +D+S  +
Sbjct: 202 SMRHYFIDIREVEISRNLKRLYKAKNNLSKTVPNLHRKEDISSLI 246

Required for biogenesis of the 60S ribosomal subunit.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|P38789|SSF1_YEAST Ribosome biogenesis protein SSF1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SSF1 PE=1 SV=1

 Score =  149 bits (377), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 86/225 (38%), Positives = 132/225 (58%), Gaps = 20/225 (8%)

Query: 32  IPKSFVFSRGKLP---GPLRQLEMDLRKLMLPHTALNLKEKKRNNLKDFLNVAGPMGVTH 88
           IPKS V   G+       L QL  D R++M PHTA+ LKE+K N LKDF+ + GP+GVTH
Sbjct: 22  IPKSMVIRVGQTSLANHSLNQLVKDFRQIMQPHTAIKLKERKSNKLKDFVVMCGPLGVTH 81

Query: 89  FLMLSKTESAP--YLRVARTPQGPTLTFKIHEYSLAVDVAQSQLRPRC-PQDLFKTSPLI 145
             M +++E      L++ARTPQGPT+TF++ +YSL  D+ +   RP+    D     PL+
Sbjct: 82  LFMFTQSEKTGNVSLKIARTPQGPTVTFQVLDYSLGRDIKKFLKRPKSLNNDDVLNPPLL 141

Query: 146 VLSGF------GTGDQHLKLTTI---MFQNIFPAIDINTVKLSTCQRIVLLNYNKDTKLI 196
           VL+GF      G  DQ + +  +   MFQNIFP ++     L++ +R+ ++N +++T  I
Sbjct: 142 VLNGFSTSKRSGEDDQDVNVEKVIVSMFQNIFPPLNPARTSLNSIKRVFMINKDRETGEI 201

Query: 197 DFRHYSIRLQPVGVSRRLRKFVQ-----SHQVPDLRSLQDVSDFV 236
             RHY I ++ V +SR L++  +     S  VP+L   +D+S  +
Sbjct: 202 SMRHYFIDIREVEISRNLKRLYKAKNNLSKTVPNLHRKEDISSLI 246

Required for biogenesis of the 60S ribosomal subunit.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	238
449469080	344	PREDICTED: peter Pan-like protein-like [	1.0	0.691	0.886	1e-121
225437370	330	PREDICTED: peter Pan-like protein [Vitis	0.995	0.718	0.869	1e-121
224128486	327	predicted protein [Populus trichocarpa]	0.991	0.721	0.872	1e-116
224068336	297	predicted protein [Populus trichocarpa]	0.953	0.764	0.889	1e-116
297793739	304	brix domain-containing protein [Arabidop	1.0	0.782	0.824	1e-110
30697573	346	Peter Pan-like protein [Arabidopsis thal	1.0	0.687	0.815	1e-110
255564174	341	Protein Peter pan, putative [Ricinus com	0.995	0.695	0.815	1e-110
30697571	345	Peter Pan-like protein [Arabidopsis thal	1.0	0.689	0.815	1e-110
356544390	348	PREDICTED: peter Pan-like protein-like [	0.970	0.663	0.797	1e-104
363814435	336	uncharacterized protein LOC100785073 [Gl	0.970	0.687	0.784	1e-102

>gi|449469080|ref|XP_004152249.1| PREDICTED: peter Pan-like protein-like [Cucumis sativus]

 Score =  439 bits (1130), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 211/238 (88%), Positives = 224/238 (94%)

Query: 1   MARFRNSKKKGFVKSFVKKKQPTVDHITGDKIPKSFVFSRGKLPGPLRQLEMDLRKLMLP 60
           MAR  N KK+ FVK    KKQ  VDH+TG+KIPKSFVFSRGKLPGPL+QL+MDLRKLMLP
Sbjct: 1   MARIGNKKKQRFVKPIKVKKQSEVDHVTGEKIPKSFVFSRGKLPGPLKQLQMDLRKLMLP 60

Query: 61  HTALNLKEKKRNNLKDFLNVAGPMGVTHFLMLSKTESAPYLRVARTPQGPTLTFKIHEYS 120
           +TALNLKEKKRNNLKD+LNVAGPMGVTHFLMLSKTE+APYLRVARTPQGPTLTFKI EYS
Sbjct: 61  YTALNLKEKKRNNLKDYLNVAGPMGVTHFLMLSKTETAPYLRVARTPQGPTLTFKIQEYS 120

Query: 121 LAVDVAQSQLRPRCPQDLFKTSPLIVLSGFGTGDQHLKLTTIMFQNIFPAIDINTVKLST 180
           LAV++AQSQLRPRCP+DLFK  PLIVLSGFGTGDQHLKL TIMFQNIFPAIDINTVKLST
Sbjct: 121 LAVEIAQSQLRPRCPKDLFKNPPLIVLSGFGTGDQHLKLATIMFQNIFPAIDINTVKLST 180

Query: 181 CQRIVLLNYNKDTKLIDFRHYSIRLQPVGVSRRLRKFVQSHQVPDLRSLQDVSDFVTK 238
           CQRIVLLNYNKDTKLIDFRHYSIRLQPVGV+RRLRKFVQ+HQVPDLRSLQDVSDFVTK
Sbjct: 181 CQRIVLLNYNKDTKLIDFRHYSIRLQPVGVTRRLRKFVQNHQVPDLRSLQDVSDFVTK 238

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225437370|ref|XP_002269158.1| PREDICTED: peter Pan-like protein [Vitis vinifera] gi|297743890|emb|CBI36860.3| unnamed protein product [Vitis vinifera]

 Score =  438 bits (1127), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 207/238 (86%), Positives = 230/238 (96%), Gaps = 1/238 (0%)

Query: 1   MARFRNSKKKGFVKSFVKKKQPTVDHITGDKIPKSFVFSRGKLPGPLRQLEMDLRKLMLP 60
           MARFRN+KKKGFVK  V KKQP VDH+TG+KIP S VFSRGKLPG L+QL+MDLRKLMLP
Sbjct: 1   MARFRNNKKKGFVKP-VGKKQPGVDHVTGEKIPHSIVFSRGKLPGSLKQLQMDLRKLMLP 59

Query: 61  HTALNLKEKKRNNLKDFLNVAGPMGVTHFLMLSKTESAPYLRVARTPQGPTLTFKIHEYS 120
           +TA+NLKEK+RNNLKDFLN+AGP+GVTHFLMLSKTE+APYL+VARTPQGPTLTFKIHEYS
Sbjct: 60  YTAVNLKEKRRNNLKDFLNIAGPLGVTHFLMLSKTETAPYLKVARTPQGPTLTFKIHEYS 119

Query: 121 LAVDVAQSQLRPRCPQDLFKTSPLIVLSGFGTGDQHLKLTTIMFQNIFPAIDINTVKLST 180
           LAVDVAQSQLRPRCPQDLFK SPLIVLSGFG+G+QHLKLTT+MFQNIFPAID+NTVKLS+
Sbjct: 120 LAVDVAQSQLRPRCPQDLFKNSPLIVLSGFGSGEQHLKLTTVMFQNIFPAIDVNTVKLSS 179

Query: 181 CQRIVLLNYNKDTKLIDFRHYSIRLQPVGVSRRLRKFVQSHQVPDLRSLQDVSDFVTK 238
           CQRIVLLNYNKDTKLIDFRHYSIRLQPVGVS+R+RKFVQ+HQVPDL++LQDVSDF+TK
Sbjct: 180 CQRIVLLNYNKDTKLIDFRHYSIRLQPVGVSKRVRKFVQNHQVPDLKNLQDVSDFITK 237

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224128486|ref|XP_002320344.1| predicted protein [Populus trichocarpa] gi|222861117|gb|EEE98659.1| predicted protein [Populus trichocarpa]

 Score =  424 bits (1091), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 206/236 (87%), Positives = 220/236 (93%)

Query: 3   RFRNSKKKGFVKSFVKKKQPTVDHITGDKIPKSFVFSRGKLPGPLRQLEMDLRKLMLPHT 62
            F    KK FVK   KKKQ  VDHITGDKIPKSFVF+RGKLPGPLRQL+M+LRKLMLP T
Sbjct: 23  EFIQKNKKMFVKPTSKKKQADVDHITGDKIPKSFVFARGKLPGPLRQLQMNLRKLMLPFT 82

Query: 63  ALNLKEKKRNNLKDFLNVAGPMGVTHFLMLSKTESAPYLRVARTPQGPTLTFKIHEYSLA 122
           AL LKEKKRN+LKDFLNVAGPMGVTHFLMLSKTE+APYLRVARTPQGPTLTFKIHEYSLA
Sbjct: 83  ALKLKEKKRNSLKDFLNVAGPMGVTHFLMLSKTETAPYLRVARTPQGPTLTFKIHEYSLA 142

Query: 123 VDVAQSQLRPRCPQDLFKTSPLIVLSGFGTGDQHLKLTTIMFQNIFPAIDINTVKLSTCQ 182
           VDVAQSQL PRCPQDLFK +PLIVLSGFG+G+QHLKLTT+MFQNIFPAID+NTVKLS+CQ
Sbjct: 143 VDVAQSQLHPRCPQDLFKNAPLIVLSGFGSGEQHLKLTTVMFQNIFPAIDVNTVKLSSCQ 202

Query: 183 RIVLLNYNKDTKLIDFRHYSIRLQPVGVSRRLRKFVQSHQVPDLRSLQDVSDFVTK 238
           RIVLLNYNKDTKLIDFRHYSIRLQPVGVSRRLRKFVQ+ QVPDLR+LQDVSDFV+K
Sbjct: 203 RIVLLNYNKDTKLIDFRHYSIRLQPVGVSRRLRKFVQNRQVPDLRNLQDVSDFVSK 258

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224068336|ref|XP_002302711.1| predicted protein [Populus trichocarpa] gi|222844437|gb|EEE81984.1| predicted protein [Populus trichocarpa]

 Score =  422 bits (1085), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 202/227 (88%), Positives = 216/227 (95%)

Query: 12  FVKSFVKKKQPTVDHITGDKIPKSFVFSRGKLPGPLRQLEMDLRKLMLPHTALNLKEKKR 71
           FVK  VKKKQ  VDHITGDKIPKSFVF+RGKLPG LRQL+MDLRKLMLP+TAL LKEKKR
Sbjct: 2   FVKPIVKKKQANVDHITGDKIPKSFVFARGKLPGSLRQLQMDLRKLMLPYTALKLKEKKR 61

Query: 72  NNLKDFLNVAGPMGVTHFLMLSKTESAPYLRVARTPQGPTLTFKIHEYSLAVDVAQSQLR 131
           NNLKDFLNVAGPMGV+HFL+LSKTE+APYLRVARTPQGPTLTFKIHEYSLA DVAQSQL 
Sbjct: 62  NNLKDFLNVAGPMGVSHFLILSKTETAPYLRVARTPQGPTLTFKIHEYSLAADVAQSQLH 121

Query: 132 PRCPQDLFKTSPLIVLSGFGTGDQHLKLTTIMFQNIFPAIDINTVKLSTCQRIVLLNYNK 191
           PRCPQDLFK +PLIVLSGFG+G+QHLKLTT+MFQ IFPAIDINTVKLS+CQRIVLLNYNK
Sbjct: 122 PRCPQDLFKNAPLIVLSGFGSGEQHLKLTTVMFQKIFPAIDINTVKLSSCQRIVLLNYNK 181

Query: 192 DTKLIDFRHYSIRLQPVGVSRRLRKFVQSHQVPDLRSLQDVSDFVTK 238
           DTKLIDFRHYSI+LQPVGVSRRLRKFVQ+ QVPDLR+LQDVSDFVTK
Sbjct: 182 DTKLIDFRHYSIKLQPVGVSRRLRKFVQNRQVPDLRNLQDVSDFVTK 228

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297793739|ref|XP_002864754.1| brix domain-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297310589|gb|EFH41013.1| brix domain-containing protein [Arabidopsis lyrata subsp. lyrata]

 Score =  404 bits (1038), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 197/239 (82%), Positives = 218/239 (91%), Gaps = 1/239 (0%)

Query: 1   MARFRNSKK-KGFVKSFVKKKQPTVDHITGDKIPKSFVFSRGKLPGPLRQLEMDLRKLML 59
           M RF+N+KK +  VK   KK Q  V H+TGDKIPKSFVFSR KLPGP++QL+MDLRKLML
Sbjct: 1   MGRFKNNKKSRVIVKPIPKKNQEDVSHVTGDKIPKSFVFSRMKLPGPVKQLQMDLRKLML 60

Query: 60  PHTALNLKEKKRNNLKDFLNVAGPMGVTHFLMLSKTESAPYLRVARTPQGPTLTFKIHEY 119
           P+TAL+LKEKKRN L+DFLNV+GPMGVTHFLMLSKT S+  LRVARTPQGPTLTFKIH+Y
Sbjct: 61  PYTALSLKEKKRNTLRDFLNVSGPMGVTHFLMLSKTASSLSLRVARTPQGPTLTFKIHQY 120

Query: 120 SLAVDVAQSQLRPRCPQDLFKTSPLIVLSGFGTGDQHLKLTTIMFQNIFPAIDINTVKLS 179
           SLA D+AQSQLRPRCPQDLFK+ PLIVLSGFG+ + HLKL TIMFQNIFPAIDINTVKLS
Sbjct: 121 SLASDIAQSQLRPRCPQDLFKSPPLIVLSGFGSQELHLKLATIMFQNIFPAIDINTVKLS 180

Query: 180 TCQRIVLLNYNKDTKLIDFRHYSIRLQPVGVSRRLRKFVQSHQVPDLRSLQDVSDFVTK 238
           TCQR+VLLNYNKDTKLIDFRHYSIRLQPVGVSRR+RKFVQ+HQVPDLR+LQDVSDFVTK
Sbjct: 181 TCQRLVLLNYNKDTKLIDFRHYSIRLQPVGVSRRIRKFVQNHQVPDLRNLQDVSDFVTK 239

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30697573|ref|NP_568939.2| Peter Pan-like protein [Arabidopsis thaliana] gi|42573760|ref|NP_974976.1| Peter Pan-like protein [Arabidopsis thaliana] gi|10176870|dbj|BAB10077.1| unnamed protein product [Arabidopsis thaliana] gi|332010132|gb|AED97515.1| Peter Pan-like protein [Arabidopsis thaliana] gi|332010133|gb|AED97516.1| Peter Pan-like protein [Arabidopsis thaliana]

 Score =  402 bits (1033), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 195/239 (81%), Positives = 216/239 (90%), Gaps = 1/239 (0%)

Query: 1   MARFRNSKKKGFV-KSFVKKKQPTVDHITGDKIPKSFVFSRGKLPGPLRQLEMDLRKLML 59
           M RF+N+KK   + K   KK Q  V H+TGDKIPKSFVFSR KL GP++QL+MDLRKLML
Sbjct: 1   MGRFKNNKKSRVIGKPIAKKNQEDVSHVTGDKIPKSFVFSRMKLAGPVKQLQMDLRKLML 60

Query: 60  PHTALNLKEKKRNNLKDFLNVAGPMGVTHFLMLSKTESAPYLRVARTPQGPTLTFKIHEY 119
           P+TAL+LKEKKRN L+DFLNV+GPMGVTHFLMLSKT S+  LRVARTPQGPTLTFKIH+Y
Sbjct: 61  PYTALSLKEKKRNTLRDFLNVSGPMGVTHFLMLSKTASSLSLRVARTPQGPTLTFKIHQY 120

Query: 120 SLAVDVAQSQLRPRCPQDLFKTSPLIVLSGFGTGDQHLKLTTIMFQNIFPAIDINTVKLS 179
           SLA D+AQSQLRPRCPQDLFK+ PLIVLSGFG+ + HLKL TIMFQNIFPAIDINTVKLS
Sbjct: 121 SLASDIAQSQLRPRCPQDLFKSPPLIVLSGFGSQELHLKLATIMFQNIFPAIDINTVKLS 180

Query: 180 TCQRIVLLNYNKDTKLIDFRHYSIRLQPVGVSRRLRKFVQSHQVPDLRSLQDVSDFVTK 238
           TCQR+VLLNYNKDTKLIDFRHYSIRLQPVGVSRR+RKFVQ+HQVPDLR+LQDVSDFVTK
Sbjct: 181 TCQRLVLLNYNKDTKLIDFRHYSIRLQPVGVSRRIRKFVQNHQVPDLRNLQDVSDFVTK 239

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255564174|ref|XP_002523084.1| Protein Peter pan, putative [Ricinus communis] gi|223537646|gb|EEF39269.1| Protein Peter pan, putative [Ricinus communis]

 Score =  402 bits (1033), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 194/238 (81%), Positives = 214/238 (89%), Gaps = 1/238 (0%)

Query: 1   MARFRNSKKKGFVKSFVKKKQPTVDHITGDKIPKSFVFSRGKLPGPLRQLEMDLRKLMLP 60
           MAR ++ K+K   K  VKK+   VDHITGDKIPKSFVF+RGKLPGPLRQL+MDLRKLMLP
Sbjct: 1   MARVQSKKRKFAAKPIVKKEHGNVDHITGDKIPKSFVFARGKLPGPLRQLQMDLRKLMLP 60

Query: 61  HTALNLKEKKRNNLKDFLNVAGPMGVTHFLMLSKTESAPYLRVARTPQGPTLTFKIHEYS 120
           +TALNLKEKKRN L+DFLNVAGPMGVTHFLMLSKT +APYLRVARTPQGPTLTFKI EYS
Sbjct: 61  YTALNLKEKKRNTLRDFLNVAGPMGVTHFLMLSKTATAPYLRVARTPQGPTLTFKILEYS 120

Query: 121 LAVDVAQSQLRPRCPQDLFKTSPLIVLSGFGTGDQHLKLTTIMFQNIFPAIDINTVKLST 180
            A+DVAQSQLRPRCPQDLFK  PLIVLSGFG+ +QHLKLT IMFQNIFPAID+NTVKLS+
Sbjct: 121 TALDVAQSQLRPRCPQDLFKNPPLIVLSGFGS-EQHLKLTAIMFQNIFPAIDVNTVKLSS 179

Query: 181 CQRIVLLNYNKDTKLIDFRHYSIRLQPVGVSRRLRKFVQSHQVPDLRSLQDVSDFVTK 238
           CQRIVLL YNKDTK  DFRHYSIRLQPVGV+RR+RKFVQ+H+VP+L   QDVSDF+TK
Sbjct: 180 CQRIVLLTYNKDTKHTDFRHYSIRLQPVGVTRRIRKFVQNHEVPNLSGHQDVSDFITK 237

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30697571|ref|NP_851242.1| Peter Pan-like protein [Arabidopsis thaliana] gi|24212091|sp|Q9ASU7.1|PPAN_ARATH RecName: Full=Peter Pan-like protein gi|13605686|gb|AAK32836.1|AF361824_1 AT5g61770/mac9_70 [Arabidopsis thaliana] gi|15810077|gb|AAL06964.1| At1g06730/F4H5_22 [Arabidopsis thaliana] gi|17979000|gb|AAL47460.1| AT5g61770/mac9_70 [Arabidopsis thaliana] gi|332010131|gb|AED97514.1| Peter Pan-like protein [Arabidopsis thaliana]

 Score =  402 bits (1032), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 195/239 (81%), Positives = 216/239 (90%), Gaps = 1/239 (0%)

Query: 1   MARFRNSKKKGFV-KSFVKKKQPTVDHITGDKIPKSFVFSRGKLPGPLRQLEMDLRKLML 59
           M RF+N+KK   + K   KK Q  V H+TGDKIPKSFVFSR KL GP++QL+MDLRKLML
Sbjct: 1   MGRFKNNKKSRVIGKPIAKKNQEDVSHVTGDKIPKSFVFSRMKLAGPVKQLQMDLRKLML 60

Query: 60  PHTALNLKEKKRNNLKDFLNVAGPMGVTHFLMLSKTESAPYLRVARTPQGPTLTFKIHEY 119
           P+TAL+LKEKKRN L+DFLNV+GPMGVTHFLMLSKT S+  LRVARTPQGPTLTFKIH+Y
Sbjct: 61  PYTALSLKEKKRNTLRDFLNVSGPMGVTHFLMLSKTASSLSLRVARTPQGPTLTFKIHQY 120

Query: 120 SLAVDVAQSQLRPRCPQDLFKTSPLIVLSGFGTGDQHLKLTTIMFQNIFPAIDINTVKLS 179
           SLA D+AQSQLRPRCPQDLFK+ PLIVLSGFG+ + HLKL TIMFQNIFPAIDINTVKLS
Sbjct: 121 SLASDIAQSQLRPRCPQDLFKSPPLIVLSGFGSQELHLKLATIMFQNIFPAIDINTVKLS 180

Query: 180 TCQRIVLLNYNKDTKLIDFRHYSIRLQPVGVSRRLRKFVQSHQVPDLRSLQDVSDFVTK 238
           TCQR+VLLNYNKDTKLIDFRHYSIRLQPVGVSRR+RKFVQ+HQVPDLR+LQDVSDFVTK
Sbjct: 181 TCQRLVLLNYNKDTKLIDFRHYSIRLQPVGVSRRIRKFVQNHQVPDLRNLQDVSDFVTK 239

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356544390|ref|XP_003540635.1| PREDICTED: peter Pan-like protein-like [Glycine max]

 Score =  383 bits (983), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 189/237 (79%), Positives = 209/237 (88%), Gaps = 6/237 (2%)

Query: 8   KKKGFVKSFVKKK------QPTVDHITGDKIPKSFVFSRGKLPGPLRQLEMDLRKLMLPH 61
           KK+GF +  V KK      QP+VD ITG KIPKSFVFSRGKLP PL+QL+MDLRKLMLP+
Sbjct: 4   KKQGFRRPVVIKKPKQPQEQPSVDPITGKKIPKSFVFSRGKLPAPLKQLQMDLRKLMLPY 63

Query: 62  TALNLKEKKRNNLKDFLNVAGPMGVTHFLMLSKTESAPYLRVARTPQGPTLTFKIHEYSL 121
           TAL+L+EKKRNNL+DFLNVAGPMGVTHF +LSKT ++ YLRVA TPQGPTLTFKIHEYSL
Sbjct: 64  TALSLREKKRNNLRDFLNVAGPMGVTHFFILSKTATSSYLRVATTPQGPTLTFKIHEYSL 123

Query: 122 AVDVAQSQLRPRCPQDLFKTSPLIVLSGFGTGDQHLKLTTIMFQNIFPAIDINTVKLSTC 181
           A D+A+SQL PRCP+DLFK S LIVLSGF +GD  L+LTT MFQNIFP ID+ TVKLSTC
Sbjct: 124 AADIARSQLHPRCPKDLFKNSALIVLSGFVSGDPPLQLTTNMFQNIFPTIDVKTVKLSTC 183

Query: 182 QRIVLLNYNKDTKLIDFRHYSIRLQPVGVSRRLRKFVQSHQVPDLRSLQDVSDFVTK 238
           QRIVLLNYNKDTKLIDFRHYSIRLQPVGVSRR+RK VQSHQVPDLR+LQDVSDFVTK
Sbjct: 184 QRIVLLNYNKDTKLIDFRHYSIRLQPVGVSRRIRKLVQSHQVPDLRNLQDVSDFVTK 240

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363814435|ref|NP_001242597.1| uncharacterized protein LOC100785073 [Glycine max] gi|255644918|gb|ACU22959.1| unknown [Glycine max]

 Score =  378 bits (970), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 186/237 (78%), Positives = 209/237 (88%), Gaps = 6/237 (2%)

Query: 8   KKKGFVKSFVKKK------QPTVDHITGDKIPKSFVFSRGKLPGPLRQLEMDLRKLMLPH 61
           KK+GF +  + KK      QP+VD ITG KIPKSFVFSRGKLP P +QL+MDLRKLMLP+
Sbjct: 4   KKQGFRRPVIIKKPKQPQEQPSVDPITGKKIPKSFVFSRGKLPAPPKQLQMDLRKLMLPY 63

Query: 62  TALNLKEKKRNNLKDFLNVAGPMGVTHFLMLSKTESAPYLRVARTPQGPTLTFKIHEYSL 121
           TAL+L+EKKRNNL+DFLNVAGPMGVTHF +LSKT ++PYLRVA TPQGPTLTFKIHEYSL
Sbjct: 64  TALSLREKKRNNLRDFLNVAGPMGVTHFFILSKTATSPYLRVATTPQGPTLTFKIHEYSL 123

Query: 122 AVDVAQSQLRPRCPQDLFKTSPLIVLSGFGTGDQHLKLTTIMFQNIFPAIDINTVKLSTC 181
           A D+A+SQL PRCP+DLFK+S LIVLSGF +GD  L+LTT MFQNIFP ID+ TVKLSTC
Sbjct: 124 AADIARSQLHPRCPKDLFKSSALIVLSGFVSGDPPLQLTTNMFQNIFPTIDVKTVKLSTC 183

Query: 182 QRIVLLNYNKDTKLIDFRHYSIRLQPVGVSRRLRKFVQSHQVPDLRSLQDVSDFVTK 238
           QRIVLLNYNKDTKLIDFRHYSIRLQPVGVSRR+RK VQSHQVPDLR+L DVS+FVTK
Sbjct: 184 QRIVLLNYNKDTKLIDFRHYSIRLQPVGVSRRIRKLVQSHQVPDLRNLLDVSNFVTK 240

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	238
TAIR|locus:2159213	346	PPAN "PETER PAN-like protein"	1.0	0.687	0.757	8.1e-92
MGI|MGI:2178445	470	Ppan "peter pan homolog (Droso	0.852	0.431	0.455	3e-46
UNIPROTKB|E2RGE3	559	PPAN "Uncharacterized protein"	0.852	0.363	0.465	4.8e-46
UNIPROTKB|Q9NQ55	473	PPAN "Suppressor of SWI4 1 hom	0.852	0.429	0.455	9.1e-45
UNIPROTKB|A8MV53	420	PPAN "HCG2033702, isoform CRA_	0.747	0.423	0.452	2.6e-38
POMBASE|SPAC1B9.03c	389	SPAC1B9.03c "RNA-binding prote	0.886	0.542	0.391	8e-37
FB|FBgn0010770	460	ppan "peter pan" [Drosophila m	0.861	0.445	0.383	1e-36
WB|WBGene00003062	573	lpd-6 [Caenorhabditis elegans	0.852	0.354	0.358	7.5e-34
UNIPROTKB|G4NEI7	474	MGG_00087 "Ribosome biogenesis	0.773	0.388	0.378	1.6e-29
SGD|S000002720	453	SSF2 "Protein required for rib	0.861	0.452	0.36	2.1e-29

TAIR|locus:2159213 PPAN "PETER PAN-like protein" [Arabidopsis thaliana (taxid:3702)]

 Score = 915 (327.2 bits), Expect = 8.1e-92, P = 8.1e-92
 Identities = 181/239 (75%), Positives = 198/239 (82%)

Query:     1 MARFRNXXXXXXXXX-XXXXXQPTVDHITGDKIPKSFVFSRGKLPGPLRQLEMDLRKLML 59
             M RF+N               Q  V H+TGDKIPKSFVFSR KL GP++QL+MDLRKLML
Sbjct:     1 MGRFKNNKKSRVIGKPIAKKNQEDVSHVTGDKIPKSFVFSRMKLAGPVKQLQMDLRKLML 60

Query:    60 PHTAXXXXXXXXXXXXDFLNVAGPMGVTHFLMLSKTESAPYLRVARTPQGPTLTFKIHEY 119
             P+TA            DFLNV+GPMGVTHFLMLSKT S+  LRVARTPQGPTLTFKIH+Y
Sbjct:    61 PYTALSLKEKKRNTLRDFLNVSGPMGVTHFLMLSKTASSLSLRVARTPQGPTLTFKIHQY 120

Query:   120 SLAVDVAQSQLRPRCPQDLFKTSPLIVLSGFGTGDQHLKLTTIMFQNIFPAIDINTVKLS 179
             SLA D+AQSQLRPRCPQDLFK+ PLIVLSGFG+ + HLKL TIMFQNIFPAIDINTVKLS
Sbjct:   121 SLASDIAQSQLRPRCPQDLFKSPPLIVLSGFGSQELHLKLATIMFQNIFPAIDINTVKLS 180

Query:   180 TCQRIVLLNYNKDTKLIDFRHYSIRLQPVGVSRRLRKFVQSHQVPDLRSLQDVSDFVTK 238
             TCQR+VLLNYNKDTKLIDFRHYSIRLQPVGVSRR+RKFVQ+HQVPDLR+LQDVSDFVTK
Sbjct:   181 TCQRLVLLNYNKDTKLIDFRHYSIRLQPVGVSRRIRKFVQNHQVPDLRNLQDVSDFVTK 239

GO:0005634 "nucleus" evidence=ISM

MGI|MGI:2178445 Ppan "peter pan homolog (Drosophila)" [Mus musculus (taxid:10090)]

 Score = 485 (175.8 bits), Expect = 3.0e-46, P = 3.0e-46
 Identities = 93/204 (45%), Positives = 140/204 (68%)

Query:    33 PKSFVFSRGKLPGPLRQLEMDLRKLMLPHTAXXXXXXXXXXXXDFLNVAGPMGVTHFLML 92
             P SFVF+RG+    +RQL +D+R++M P TA            D + VAGP+GVTHFL+L
Sbjct:    29 PHSFVFTRGRAGRNVRQLSLDVRRVMEPLTATRLQVRKKNSLKDCVAVAGPLGVTHFLIL 88

Query:    93 SKTESAPYLRVARTPQGPTLTFKIHEYSLAVDVAQSQLRPRCPQDLFKTSPLIVLSGFGT 152
             +KT+++ YL++ R P GPTLTF+I +Y+L  DV  S  R R  +  F   PL+VL+ FG 
Sbjct:    89 TKTDNSVYLKLMRLPGGPTLTFQISKYTLIRDVVSSLRRHRMHEQQFNHPPLLVLNSFGP 148

Query:   153 GDQHLKLTTIMFQNIFPAIDINTVKLSTCQRIVLLNYNKDTKLIDFRHYSIRLQPVGVSR 212
                H+KL   MFQN+FP+I+++TV L+T +R +L+NYN D++ +DFRHYS+++ PVG SR
Sbjct:   149 QGMHIKLMATMFQNLFPSINVHTVNLNTIKRCLLINYNPDSQELDFRHYSVKVVPVGASR 208

Query:   213 RLRKFVQSHQVPDLRSLQDVSDFV 236
              ++K +Q  + P++  LQD+S+ +
Sbjct:   209 GMKKLLQE-KFPNMSRLQDISELL 231

GO:0001560 "regulation of cell growth by extracellular stimulus" evidence=ISO

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISO

UNIPROTKB|E2RGE3 PPAN "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 483 (175.1 bits), Expect = 4.8e-46, P = 4.8e-46
 Identities = 95/204 (46%), Positives = 138/204 (67%)

Query:    33 PKSFVFSRGKLPGPLRQLEMDLRKLMLPHTAXXXXXXXXXXXXDFLNVAGPMGVTHFLML 92
             P SFVF+RG+    +RQL +DLR++M P TA            D + VAGP+GVTHFL+L
Sbjct:    29 PHSFVFARGRAGRGVRQLSLDLRRVMEPLTATRLQIRKKNTLKDCVAVAGPLGVTHFLIL 88

Query:    93 SKTESAPYLRVARTPQGPTLTFKIHEYSLAVDVAQSQLRPRCPQDLFKTSPLIVLSGFGT 152
             SKTE+  Y ++ R P GPTLTF+I++Y+L  DV  S  R R  +  F   PL+VL+ FG 
Sbjct:    89 SKTETNIYFKLMRLPGGPTLTFRINKYTLVRDVVSSLRRHRMHEQQFAHPPLLVLNSFGP 148

Query:   153 GDQHLKLTTIMFQNIFPAIDINTVKLSTCQRIVLLNYNKDTKLIDFRHYSIRLQPVGVSR 212
                H+KL   MFQN+FP+I+++ V L+T +R +L+NYN D++ +DFRHYSI++ PVG SR
Sbjct:   149 HGMHVKLMATMFQNLFPSINVHKVNLNTIKRCLLINYNPDSQELDFRHYSIKVVPVGASR 208

Query:   213 RLRKFVQSHQVPDLRSLQDVSDFV 236
              ++K +Q  + P++  LQD+S+ +
Sbjct:   209 GMKKLLQE-KFPNMSRLQDISELL 231

GO:0016021 "integral to membrane" evidence=IEA

GO:0045028 "G-protein coupled purinergic nucleotide receptor activity" evidence=IEA

UNIPROTKB|Q9NQ55 PPAN "Suppressor of SWI4 1 homolog" [Homo sapiens (taxid:9606)]

 Score = 471 (170.9 bits), Expect = 9.1e-45, P = 9.1e-45
 Identities = 93/204 (45%), Positives = 136/204 (66%)

Query:    33 PKSFVFSRGKLPGPLRQLEMDLRKLMLPHTAXXXXXXXXXXXXDFLNVAGPMGVTHFLML 92
             P SFVF+RG     +RQL +D+R++M P TA            D + VAGP+GVTHFL+L
Sbjct:    29 PHSFVFTRGCTGRNIRQLSLDVRRVMEPLTASRLQVRKKNSLKDCVAVAGPLGVTHFLIL 88

Query:    93 SKTESAPYLRVARTPQGPTLTFKIHEYSLAVDVAQSQLRPRCPQDLFKTSPLIVLSGFGT 152
             SKTE+  Y ++ R P GPTLTF++ +YSL  DV  S  R R  +  F   PL+VL+ FG 
Sbjct:    89 SKTETNVYFKLMRLPGGPTLTFQVKKYSLVRDVVSSLRRHRMHEQQFAHPPLLVLNSFGP 148

Query:   153 GDQHLKLTTIMFQNIFPAIDINTVKLSTCQRIVLLNYNKDTKLIDFRHYSIRLQPVGVSR 212
                H+KL   MFQN+FP+I+++ V L+T +R +L++YN D++ +DFRHYSI++ PVG SR
Sbjct:   149 HGMHVKLMATMFQNLFPSINVHKVNLNTIKRCLLIDYNPDSQELDFRHYSIKVVPVGASR 208

Query:   213 RLRKFVQSHQVPDLRSLQDVSDFV 236
              ++K +Q  + P++  LQD+S+ +
Sbjct:   209 GMKKLLQE-KFPNMSRLQDISELL 231

GO:0005634 "nucleus" evidence=IDA

GO:0008380 "RNA splicing" evidence=TAS

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

UNIPROTKB|A8MV53 PPAN "HCG2033702, isoform CRA_a" [Homo sapiens (taxid:9606)]

 Score = 410 (149.4 bits), Expect = 2.6e-38, P = 2.6e-38
 Identities = 81/179 (45%), Positives = 118/179 (65%)

Query:    58 MLPHTAXXXXXXXXXXXXDFLNVAGPMGVTHFLMLSKTESAPYLRVARTPQGPTLTFKIH 117
             M P TA            D + VAGP+GVTHFL+LSKTE+  Y ++ R P GPTLTF++ 
Sbjct:     1 MEPLTASRLQVRKKNSLKDCVAVAGPLGVTHFLILSKTETNVYFKLMRLPGGPTLTFQVK 60

Query:   118 EYSLAVDVAQSQLRPRCPQDLFKTSPLIVLSGFGTGDQHLKLTTIMFQNIFPAIDINTVK 177
             +YSL  DV  S  R R  +  F   PL+VL+ FG    H+KL   MFQN+FP+I+++ V 
Sbjct:    61 KYSLVRDVVSSLRRHRMHEQQFAHPPLLVLNSFGPHGMHVKLMATMFQNLFPSINVHKVN 120

Query:   178 LSTCQRIVLLNYNKDTKLIDFRHYSIRLQPVGVSRRLRKFVQSHQVPDLRSLQDVSDFV 236
             L+T +R +L++YN D++ +DFRHYSI++ PVG SR ++K +Q  + P++  LQD+S+ +
Sbjct:   121 LNTIKRCLLIDYNPDSQELDFRHYSIKVVPVGASRGMKKLLQE-KFPNMSRLQDISELL 178

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

POMBASE|SPAC1B9.03c SPAC1B9.03c "RNA-binding protein involved in ribosomal large subunit assembly and maintenance (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 396 (144.5 bits), Expect = 8.0e-37, P = 8.0e-37
 Identities = 87/222 (39%), Positives = 128/222 (57%)

Query:    25 DHITGDKIPKSFVFSRG--KLPGPLRQLEMDLRKLMLPHTAXXXXXXXXXXXXDFLNVAG 82
             D I    IPKS V   G  ++   L  L  DLR +M PHTA            D+L +AG
Sbjct:    18 DPIQEAAIPKSMVIRSGASEVGRSLSLLTRDLRHMMEPHTAIRLKERKANKIKDYLTMAG 77

Query:    83 PMGVTHFLMLSKTESAPYLRVARTPQGPTLTFKIHEYSLAVDVAQSQLRPRCPQDLFKTS 142
             P+GVTH L+LS+T++   LR+ R P+GP+L F+IHEY L  DV + Q  P+ P   F T 
Sbjct:    78 PLGVTHLLVLSRTDNNANLRIIRAPRGPSLHFRIHEYMLNKDVRRLQKNPKSPTTEFLTP 137

Query:   143 PLIVLSGFGTGDQ----HLKLTTIMFQNIFPAIDINTVKLSTCQRIVLLNYNKDTKLIDF 198
             PL+V++ F         H  L T  FQN+FP I +    +++ +R++LLN  +D   ID 
Sbjct:   138 PLLVMNHFNQNSSKDSPHEALLTTTFQNMFPPISVQHTNINSVKRVLLLN-RRDDGYIDL 196

Query:   199 RHYSIRLQPVGVSRRLRKFVQSHQ----VPDLRSLQDVSDFV 236
             RH+ I  +PVG+SR +R  ++  +    +PDL +++D+SD+V
Sbjct:   197 RHFIISTKPVGISRPIRHLLKGEKKDSDIPDLHNVRDISDYV 238

GO:0000027 "ribosomal large subunit assembly" evidence=ISO

GO:0005730 "nucleolus" evidence=ISO;IDA

GO:0019843 "rRNA binding" evidence=ISO

FB|FBgn0010770 ppan "peter pan" [Drosophila melanogaster (taxid:7227)]

 Score = 395 (144.1 bits), Expect = 1.0e-36, P = 1.0e-36
 Identities = 79/206 (38%), Positives = 123/206 (59%)

Query:    33 PKSFVFSRGKLPGPLRQLEMDLRKLMLPHTAXXXXXXXXXXXXDFLNVAGPMGVTHFLML 92
             P SFV  RG     +  L +D R++M P TA            DF++++    V+H  + 
Sbjct:    28 PHSFVIHRGLACPYITDLTLDFRRIMEPFTASNLREKRMNRIKDFVSLSSFFHVSHMGIF 87

Query:    93 SKTESAPYLRVARTPQGPTLTFKIHEYSLAVDVAQSQLRPRCPQDLFKTSPLIVLSGFGT 152
             +K  +    +V R P+GP+LTFK+H+++LA DV     +     D FK +PL++++ F  
Sbjct:    88 NKASTQLSFKVVRLPRGPSLTFKVHQFTLARDVISLSKKQMIDNDHFKHAPLVIMNNFSG 147

Query:   153 GDQHLKLTTIMFQNIFPAIDINTVKLSTCQRIVLLNYNKDTKLIDFRHYSIRLQPVGVSR 212
               +HLKL    FQN+FP+I++ TV + T +R VL +YN DTKL++ RHYS+++ PVG+ R
Sbjct:   148 DGKHLKLMATTFQNMFPSINLATVNIGTIRRCVLFSYNPDTKLVEMRHYSVQVVPVGLKR 207

Query:   213 RLRKFVQSHQVPDLRSLQDVSDFVTK 238
              ++K V+   VP+L    +V DFVTK
Sbjct:   208 AVQKIVKG-TVPNLGKCNEVVDFVTK 232

GO:0007444 "imaginal disc development" evidence=IMP

GO:0002164 "larval development" evidence=IMP

GO:0048477 "oogenesis" evidence=IMP

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0022008 "neurogenesis" evidence=IMP

WB|WBGene00003062 lpd-6 [Caenorhabditis elegans (taxid:6239)]

 Score = 371 (135.7 bits), Expect = 7.5e-34, P = 7.5e-34
 Identities = 75/209 (35%), Positives = 130/209 (62%)

Query:    33 PKSFVFSRGKLPGPLRQLEMDLRKLMLPHTAXXXXXXXXXXXXDFLNVAGPMGVTHFLML 92
             P   V  RG +   ++ LE DLR L+ P+TA            DF+     +GVT+ ++L
Sbjct:    56 PHCLVIHRGDVGKYVKGLESDLRNLVEPNTAKNLKILKRNNIKDFIVNGAVLGVTNMMVL 115

Query:    93 SKTESAPYLRVARTPQGPTLTFKIHEYSLAVDVAQSQLRPRCPQDLFKTSPLIVLSGFGT 152
             + ++++  LR+ R  QGPTL+FK+ +YSLA  V   Q RP     LFK+SPL+V++GFG 
Sbjct:   116 TSSDASLQLRMMRFSQGPTLSFKVKQYSLARHVVNCQKRPVATDKLFKSSPLVVMNGFGD 175

Query:   153 GDQ-HLKLTTIMFQNIFPAIDINTVKLSTCQRIVLLNYNKDTKLIDFRHYSIRLQPVGVS 211
             G Q HL L     QN+FP+I+++T++L   +R ++++Y+++T  I  RH++IR+   G++
Sbjct:   176 GTQKHLSLVQTFIQNMFPSINVDTIQLGNLKRCLIVSYDEETDEIQMRHFAIRVVASGLN 235

Query:   212 RRLRKFVQSHQ-----VPDLRSLQDVSDF 235
             + ++K +Q+ +     +P+L + +D+SD+
Sbjct:   236 KSVKKLMQAEKTMGKNIPNLSTYKDISDY 264

GO:0016021 "integral to membrane" evidence=IEA

GO:0040010 "positive regulation of growth rate" evidence=IMP

GO:0002119 "nematode larval development" evidence=IMP

GO:0040007 "growth" evidence=IMP

GO:0006629 "lipid metabolic process" evidence=IMP

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0000003 "reproduction" evidence=IMP

GO:0006898 "receptor-mediated endocytosis" evidence=IMP

GO:0019915 "lipid storage" evidence=IMP

UNIPROTKB|G4NEI7 MGG_00087 "Ribosome biogenesis protein SSF1" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 327 (120.2 bits), Expect = 1.6e-29, P = 1.6e-29
 Identities = 76/201 (37%), Positives = 118/201 (58%)

Query:    33 PKSFVF--SRGKLPGPLRQLEMDLRKLMLPHTAXXXXXXXXXXXXDFLNVAGPMGVTHFL 90
             PKS V     G++   + QL  D+R++M P TA            D+L + GP+GVTH L
Sbjct:    34 PKSMVIRIGAGEVGSSVSQLATDVRRVMEPGTASRLKERRANKLRDYLVMCGPLGVTHLL 93

Query:    91 MLSKTESAPY-LRVARTPQGPTLTFKIHEYSLAVDVAQSQLRPRCPQDLFKTSPLIVLSG 149
             + S++ES    LRVA TP+GPTL F++ +YSL  DV +SQ RP+     F TSPL+V++ 
Sbjct:    94 LFSRSESGNVNLRVALTPRGPTLHFRVEKYSLTKDVQKSQRRPKGQGKEFVTSPLLVMNN 153

Query:   150 FGTGD--------QHLK-LTTIMFQNIFPAIDINTVKLSTCQRIVLLNYNKDTKL----- 195
             F +          +HL+ LTT +FQ++F  I+     L + +R++L+N  +  ++     
Sbjct:   154 FSSSSADAPSKTPKHLESLTTTVFQSLFAPINPQKTSLKSIRRVLLMNREQSKEMDGSFI 213

Query:   196 IDFRHYSIRLQPVGVSRRLRK 216
             IDFRHY+I  +P G+S+ L++
Sbjct:   214 IDFRHYAITTKPTGISKPLKR 234

GO:0000027 "ribosomal large subunit assembly" evidence=ISS

GO:0005730 "nucleolus" evidence=ISS

GO:0019843 "rRNA binding" evidence=ISS

SGD|S000002720 SSF2 "Protein required for ribosomal large subunit maturation" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 326 (119.8 bits), Expect = 2.1e-29, P = 2.1e-29
 Identities = 81/225 (36%), Positives = 123/225 (54%)

Query:    32 IPKSFVFSRGKLP---GPLRQLEMDLRKLMLPHTAXXXXXXXXXXXXDFLNVAGPMGVTH 88
             IPKS V   G+       L QL  D R++M PHTA            DF+ + GP+GVTH
Sbjct:    22 IPKSMVIRVGQTSLANHSLNQLVKDFRQIMQPHTAVKLKERKSNKLKDFVVMCGPLGVTH 81

Query:    89 FLMLSKTESAPY--LRVARTPQGPTLTFKIHEYSLAVDVAQSQLRPRC-PQDLFKTSPLI 145
               M +++E      L++ARTPQGPT+TF++ +YSL  D+ +   RP+    D     PL+
Sbjct:    82 LFMFTQSEKTGNVSLKIARTPQGPTVTFQVLDYSLGRDIKKFLKRPKSLNNDDVLNPPLL 141

Query:   146 VLSGFGTG------DQHL---KLTTIMFQNIFPAIDINTVKLSTCQRIVLLNYNKDTKLI 196
             VL+GF T       DQ +   K+   MFQNIFP ++     L++ +RI ++N +++T  I
Sbjct:   142 VLNGFSTSKRSDEDDQDVNVEKVIVSMFQNIFPPLNPARTSLNSIKRIFMINKDRETGEI 201

Query:   197 DFRHYSIRLQPVGVSRRLRKFVQ-----SHQVPDLRSLQDVSDFV 236
               RHY I ++ V +SR L++  +     S  VP+L   +D+S  +
Sbjct:   202 SMRHYFIDIREVEISRNLKRLYKAKNNLSKTVPNLHRKEDISSLI 246

GO:0005730 "nucleolus" evidence=IEA;ISS;IDA

GO:0019843 "rRNA binding" evidence=IPI

GO:0000027 "ribosomal large subunit assembly" evidence=ISS;IMP

GO:0000747 "conjugation with cellular fusion" evidence=IGI

GO:0042254 "ribosome biogenesis" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9ASU7	PPAN_ARATH	No assigned EC number	0.8158	1.0	0.6898	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	238
pfam04427	176	pfam04427, Brix, Brix domain	2e-33
smart00879	180	smart00879, Brix, The Brix domain is found in a nu	3e-31

>gnl|CDD|218084 pfam04427, Brix, Brix domain

 Score =  118 bits (299), Expect = 2e-33
 Identities = 55/177 (31%), Positives = 81/177 (45%), Gaps = 15/177 (8%)

Query: 37  VFSRGKLPGPLRQLEMDLRKLMLPHTALNLKEKKRNNLKDFLNVAGPMGVTHFLMLSKTE 96
           + +  K    LRQL  DLR L     A  L   K+  LKD L  AG  G T  L+  + +
Sbjct: 1   ITTSRKPSKRLRQLAKDLRLLF--PNAKKLNRGKKK-LKDLLEFAGEKGDTSLLVFGEHK 57

Query: 97  SAPYLRVARTPQGPTLTFKIHEYSLAVDVAQSQLRPRCPQDLFKTSPLIVLSGFGTGDQH 156
               L + R P GPTL F+I    L  D+       +       + PL+V +GF      
Sbjct: 58  KPLNLTIGRLPNGPTLEFRISNVKLLKDIKGKGKGNKG------SRPLLVFNGFFFTRLG 111

Query: 157 LKLTTIMFQNIFPAIDINTVKLSTCQRIVLLNYNKDTKLIDFRHY----SIRLQPVG 209
           LKL   + Q++FP  +++ + L    R++  +  +DT  I FRHY     + LQ +G
Sbjct: 112 LKLIKELLQDLFPGPNVHKIPLKGGDRVITFSNQRDT--IFFRHYRYKKKVELQEIG 166

Length = 176

>gnl|CDD|214879 smart00879, Brix, The Brix domain is found in a number of eukaryotic proteins

 Score =  113 bits (284), Expect = 3e-31
 Identities = 49/181 (27%), Positives = 75/181 (41%), Gaps = 12/181 (6%)

Query: 36  FVFSRGKLPGPLRQLEMDLRKLMLPHTALNLKEKKRNNLKDFLNVAGPMGVTHFLMLSKT 95
            + +  K     RQL  DLR+L  P T +N  + K N L +F +  G       ++   +
Sbjct: 1   LITTSRKPSKRTRQLAKDLRRLFPPSTKINRGKNKLNELLEFASEKG--NTDLLVVFESS 58

Query: 96  ESAP--YLRVARTPQGPTLTFKIHEYSLAVDVAQSQLRPRCPQDLFKTSPLIVLSGFGTG 153
                  L + R P GPTL FKI   SL  ++   +        L  + PL++ + F T 
Sbjct: 59  SKGRPLNLTIYRLPNGPTLDFKILNVSLRKELKGFKTGN----CLTGSRPLLIFNNFFTE 114

Query: 154 DQHLKLTTIMFQNIFPAIDINTVKLSTCQRIVLLNYNKDTKLIDFRHYSIRLQPVGVSRR 213
                L   +FQ++FP    +   L   +R+V  +   D   I FRHY I+         
Sbjct: 115 LGK--LIKELFQDLFPGPPEHKKSLPGLRRVVTFSNQDDY--IFFRHYRIKFGKKKPRVE 170

Query: 214 L 214
           L
Sbjct: 171 L 171

Members include SSF proteins from yeast and humans, Arabidopsis thaliana Peter Pan-like protein and several hypothetical proteins. Length = 180

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	238
KOG2963	405	consensus RNA-binding protein required for 60S rib	100.0
KOG2971	299	consensus RNA-binding protein required for biogene	100.0
PF04427	191	Brix: Brix domain; InterPro: IPR007109 The Brix do	100.0
KOG2781	290	consensus U3 small nucleolar ribonucleoprotein (sn	100.0
smart00879	180	Brix Brix domain. The Brix domain is found in a nu	99.98
COG5154	283	BRX1 RNA-binding protein required for 60S ribosoma	99.98
KOG2780	302	consensus Ribosome biogenesis protein RPF1, contai	99.97
PRK03972	208	ribosomal biogenesis protein; Validated	99.81
COG2136	191	IMP4 Predicted exosome subunit/U3 small nucleolar	99.77
KOG3031	307	consensus Protein required for biogenesis of the r	99.53
COG5106	316	RPF2 Uncharacterized conserved protein [Function u	97.42
PRK00933	165	ribosomal biogenesis protein; Validated	96.96

>KOG2963 consensus RNA-binding protein required for 60S ribosomal subunit biogenesis [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=5.6e-67  Score=473.28  Aligned_cols=224  Identities=55%  Similarity=0.885  Sum_probs=212.3

Q ss_pred             hhhhccCCCCCCCcCCCCCcEEEEcCCCCChhHHHHHHHHhhhcCCCcccccccccCCchhhHHhhccCCCCceEEEEEe
Q 026420           15 SFVKKKQPTVDHITGDKIPKSFVFSRGKLPGPLRQLEMDLRKLMLPHTALNLKEKKRNNLKDFLNVAGPMGVTHFLMLSK   94 (238)
Q Consensus        15 ~k~k~~~~~~~~~~~~~~Pk~lVi~~g~~s~~~~~L~~Dlr~lm~P~ta~~lk~rk~n~lkd~~~~a~~~~~Thlivf~~   94 (238)
                      +.++++.....+.++...|.++|+++|-.+..+++|..|||++|+||||++|++++.|+||||+.+|+++|||||+||+.
T Consensus         8 K~~~aq~~~~~e~~i~~~ph~~v~~rgla~~~~~~L~~DlR~iMeP~TA~~LkerK~N~iKDfv~~~gplGVTH~l~lsk   87 (405)
T KOG2963|consen    8 KRTHAQFTPEQEIEIAKSPHIRVGHRGLAGRSLKQLTLDLRRIMEPHTASNLKERKRNKLKDFVVMSGPLGVTHLLMLSK   87 (405)
T ss_pred             hhhhhhcCccchhhcccCceEEEEecccccccHHHHHHHHHHhhCcchhhHHHHHhhhhhhhHHhhcccccceEEEEEec
Confidence            33445555566778889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCceEEEeCCCCCeEEEEEeceEehhhhhhhcCCCCCCCCCCCCCcEEEecCCCCCc-hhhHHHHHHHHhcCCCCCC
Q 026420           95 TESAPYLRVARTPQGPTLTFKIHEYSLAVDVAQSQLRPRCPQDLFKTSPLIVLSGFGTGD-QHLKLTTIMFQNIFPAIDI  173 (238)
Q Consensus        95 ~~~~~~L~I~rlP~GPTl~F~V~n~~l~~di~~~~~~~~~~g~~~~~~PlLi~ngF~~~~-~~lklv~~~fq~mFp~~~~  173 (238)
                      ++..++|+|+|+|.|||++|+|..|++.+||...+++|+++...|.++||||||||++.. +|++|+.+|||+|||+||+
T Consensus        88 t~~nlslki~R~PqGPTLtFkV~qYsLardV~~~qkrp~~~~~~Fk~pPLlVmNgFg~~~~~HlkL~~t~FQNmFPsInv  167 (405)
T KOG2963|consen   88 TETNLSLKIARTPQGPTLTFKVHQYSLARDVVSLQKRPKSPNDLFKSPPLLVLNGFGTSGRKHLKLMTTMFQNMFPSINV  167 (405)
T ss_pred             ccCceeEEEEecCCCCceEEEeeehhhHHHHHHHHhCCCCchhhccCCCEEEEccCCCCcchhHHHHHHHHHHcCCCcCc
Confidence            999999999999999999999999999999999999999987779999999999999986 7999999999999999999


Q ss_pred             CCcCCCCCCeEEEEEecCCCCeEEEEeeEEEeeecccchHHHHHHhhCC----CCCCCCCCChhhhhcC
Q 026420          174 NTVKLSTCQRIVLLNYNKDTKLIDFRHYSIRLQPVGVSRRLRKFVQSHQ----VPDLRSLQDVSDFVTK  238 (238)
Q Consensus       174 ~~~~l~~~~RVvlf~~~~~~d~I~fRHY~I~~~~~g~sk~vk~~~~~~~----~p~l~~~~di~~~~~~  238 (238)
                      +++++.+|+||++++|+++|+.|.||||.|+++|+|+||+||+|+++++    +|||++++|||||+++
T Consensus       168 ~tvnlntikRcllinyn~dt~eIdmRHysI~vvpVGisR~vkkl~k~~~~~~~iPnL~~~~DISd~vl~  236 (405)
T KOG2963|consen  168 ATVNLNTIKRCLLINYNRDTGEIDMRHYSIRVVPVGISRNVKKLVKAKKNLSTIPNLHRLQDISDLVLK  236 (405)
T ss_pred             ceeeccceeEEEEEecCCCCCeeeeeeeEEEEEecccchHHHHHHhhhcccCCCCCchhhhhHHHHhcC
Confidence            9999999999999999999999999999999999999999999999874    5999999999999974

>KOG2971 consensus RNA-binding protein required for biogenesis of the ribosomal 60S subunit [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=1.6e-36  Score=265.56  Aligned_cols=163  Identities=20%  Similarity=0.315  Sum_probs=152.7

Q ss_pred             CCcEEEEcCCCCChhHHHHHHHHhhhcCCCcccccccccCCchhhHHhhccCCCCceEEEEEecCCC-CceEEEeCCCCC
Q 026420           32 IPKSFVFSRGKLPGPLRQLEMDLRKLMLPHTALNLKEKKRNNLKDFLNVAGPMGVTHFLMLSKTESA-PYLRVARTPQGP  110 (238)
Q Consensus        32 ~Pk~lVi~~g~~s~~~~~L~~Dlr~lm~P~ta~~lk~rk~n~lkd~~~~a~~~~~Thlivf~~~~~~-~~L~I~rlP~GP  110 (238)
                      ..++||+++++++.+.+|||+|+..|| ||+..+.+..++.++..+.++|+..+|+.+++|++++.. +||||+..|+||
T Consensus        49 K~rvlv~ssRgis~R~RhLm~di~~Ll-ph~k~dsk~d~~k~l~~lnel~elkncn~~lfFesrkr~DlYlWm~~~p~Gp  127 (299)
T KOG2971|consen   49 KERVLVLSSRGISFRTRHLMKDISSLL-PHSKKDSKLDRKKKLGVLNELAELKNCNSCLFFESRKRKDLYLWMSNSPNGP  127 (299)
T ss_pred             ceeEEEEecCCchHHHHHHHHHHHHhc-ccccccchhhhcchHHHHHHHHHHhcCCeEEEEEeeccCceeEEEecCCCCC
Confidence            347999999999999999999999998 999999988888899999999999999999999999875 899999999999


Q ss_pred             eEEEEEeceEehhhhhhhcCCCCCCCCCC-CCCcEEEecCCCCCchhhHHHHHHHHhcCCCCCCCCcCCCCCCeEEEEEe
Q 026420          111 TLTFKIHEYSLAVDVAQSQLRPRCPQDLF-KTSPLIVLSGFGTGDQHLKLTTIMFQNIFPAIDINTVKLSTCQRIVLLNY  189 (238)
Q Consensus       111 Tl~F~V~n~~l~~di~~~~~~~~~~g~~~-~~~PlLi~ngF~~~~~~lklv~~~fq~mFp~~~~~~~~l~~~~RVvlf~~  189 (238)
                      |+.|.|+|+|||+|+..+       |||+ +++|+|-|+.-++..+|+++++++|++.|+.|+.|..+.+++|||++|+|
T Consensus       128 SvkFlv~n~hTM~Elkmt-------gN~lkgsrplLsFd~~Fd~~pHlkl~Kell~q~fgiP~~hrkSkpf~Dhvf~Fsi  200 (299)
T KOG2971|consen  128 SVKFLVHNVHTMAELKMT-------GNCLKGSRPLLSFDKAFDELPHLKLLKELLEQIFGIPKHHRKSKPFVDHVFTFSI  200 (299)
T ss_pred             ceEEehhhhhhHHHhCCc-------cccccCCcceeecccccccchHHHHHHHHHHHHcCCCCCCcccCCccceEEEEEE
Confidence            999999999999999886       8896 59999999876666889999999999999999999999999999999999


Q ss_pred             cCCCCeEEEEeeEEE
Q 026420          190 NKDTKLIDFRHYSIR  204 (238)
Q Consensus       190 ~~~~d~I~fRHY~I~  204 (238)
                      .  ||.||||.|||.
T Consensus       201 ~--D~~IWfRnyqI~  213 (299)
T KOG2971|consen  201 L--DGKIWFRNYQIS  213 (299)
T ss_pred             e--cCeEEEEEeEec
Confidence            5  589999999996

>PF04427 Brix: Brix domain; InterPro: IPR007109 The Brix domain is found in a number of eukaryotic proteins including some from Saccharomyces cerevisiae and Homo sapiens, Arabidopsis thaliana Peter Pan-like protein and several hypothetical proteins

Probab=100.00  E-value=3.2e-37  Score=261.34  Aligned_cols=169  Identities=33%  Similarity=0.558  Sum_probs=77.4

Q ss_pred             EEcCCCCChhHHHHHHHHhhhcCCCcccccccccCCchhhHHhhccCCCCceEEEEEecCCC-CceEEEeCCCCCeEEEE
Q 026420           37 VFSRGKLPGPLRQLEMDLRKLMLPHTALNLKEKKRNNLKDFLNVAGPMGVTHFLMLSKTESA-PYLRVARTPQGPTLTFK  115 (238)
Q Consensus        37 Vi~~g~~s~~~~~L~~Dlr~lm~P~ta~~lk~rk~n~lkd~~~~a~~~~~Thlivf~~~~~~-~~L~I~rlP~GPTl~F~  115 (238)
                      |++++++|+.+++|++||+.+| |.+|..++..+.|.++|++++|..+++|+|++|+++++. .+|||+++|+|||++|+
T Consensus         1 i~ts~~~s~~~~~l~~DL~~l~-~p~s~~~~r~~~~~l~~~~~~~~~~~~~~l~~~~~~~k~p~~L~i~r~~~gptl~f~   79 (191)
T PF04427_consen    1 ITTSRKPSKRLRQLMKDLRSLF-PPNSKKLNRKKKNSLKDLLEFAKQKNCTSLFVFGEHKKNPNNLWIGRLPNGPTLEFS   79 (191)
T ss_dssp             -EESSS--HHHHHHHHHHHTTS--TTEEE---TT---HHHHHHHHHHTTEEEEEEEEEETTEEEEEEEEE-SS--EEEEE
T ss_pred             cCCCCCCCHHHHHHHHHHHHHc-CCCeEEEeCCCCCchHHHHHHHHHCCCCEEEEEEEeCCCcceEEEEecCCCCCEEEE
Confidence            6899999999999999999999 656899986666699999999999999999999999985 89999999999999999


Q ss_pred             EeceEehhhhhhhcCCCCCCCCCCCCCcEEEecCCCCCc-hhhHHHHHHHHhcCCCCCCCCcCCCCCCeEEEEEecCCCC
Q 026420          116 IHEYSLAVDVAQSQLRPRCPQDLFKTSPLIVLSGFGTGD-QHLKLTTIMFQNIFPAIDINTVKLSTCQRIVLLNYNKDTK  194 (238)
Q Consensus       116 V~n~~l~~di~~~~~~~~~~g~~~~~~PlLi~ngF~~~~-~~lklv~~~fq~mFp~~~~~~~~l~~~~RVvlf~~~~~~d  194 (238)
                      |+||++++|+.....++      .+++|+|||+||+++. ++++++++||++|||+++++.+++.++|||++|++++  |
T Consensus        80 I~~~~~~~~~~~~~~~~------~~~~P~lif~g~~~~~~~~~~~ik~~l~~lF~~~~~~~~~~~~~~rvi~f~~~~--d  151 (191)
T PF04427_consen   80 IENYKLMKDIKSSSKRP------KGSRPLLIFNGFFFELDPELKLIKELLQDLFPGPNVDSIPLPGIDRVISFSNQR--D  151 (191)
T ss_dssp             EEEEE-HHHHT-------------S---EEEEE-----------------------------------------------
T ss_pred             EEeEEEhhHhcccccCC------CCCCeEEEEEeccccccccccccccccccccccccccccccccccccccccccc--c
Confidence            99999999998764322      2568999999998874 7899999999999999999999999999999999964  5


Q ss_pred             e-EEEEeeEEEeeecccchHHHHHH
Q 026420          195 L-IDFRHYSIRLQPVGVSRRLRKFV  218 (238)
Q Consensus       195 ~-I~fRHY~I~~~~~g~sk~vk~~~  218 (238)
                      . |||||| |...   .++.+|+++
T Consensus       152 ~~I~fR~Y-i~~~---~~~~~~~~~  172 (191)
T PF04427_consen  152 FVIFFRHY-IFKS---GSKNPKKLL  172 (191)
T ss_dssp             -------------------------
T ss_pred             cccccccc-cccc---ccccccccc
Confidence            6 999999 8222   566666543

There are six (one archaean and five eukaryotic) protein families which have a similar domain architecture with a central globular Brix domain. They have an optional N- and obligatory C-terminal segments, which both have charged low-complexity regions []. Proteins from the Imp4/Brix superfamily appear to be involved in ribosomal RNA processing, which essential for the functioning of all cells. The N- and C-terminal halves of a member of the superfamily, Mil, show significant structural similarity to one another. This suggests an origin by means of an ancestral duplication. Both halves have the same fold as the anticodon-binding domain of class IIa aminoacyl-tRNA synthetases, with greater conservation seen in the N-terminal half. Structural evidence suggests that the Imp4/Brix superfamily proteins could bind single-stranded segments of RNA along a concave surface formed by the N-terminal half of their beta-sheet and a central alpha-helix [].; PDB: 2CXH_A.

>KOG2781 consensus U3 small nucleolar ribonucleoprotein (snoRNP) component [RNA processing and modification]

Probab=100.00  E-value=1.1e-34  Score=253.19  Aligned_cols=158  Identities=21%  Similarity=0.387  Sum_probs=145.1

Q ss_pred             CCCCcEEEEcCCCCChhHHHHHHHHhhhcCCCcccccccccCCchhhHHhhccCCCCceEEEEEecCCC-CceEEEeCCC
Q 026420           30 DKIPKSFVFSRGKLPGPLRQLEMDLRKLMLPHTALNLKEKKRNNLKDFLNVAGPMGVTHFLMLSKTESA-PYLRVARTPQ  108 (238)
Q Consensus        30 ~~~Pk~lVi~~g~~s~~~~~L~~Dlr~lm~P~ta~~lk~rk~n~lkd~~~~a~~~~~Thlivf~~~~~~-~~L~I~rlP~  108 (238)
                      +.+||+||++|+.+|+++.+|+++++.|+ || |.+++ |+++.+.+++++|...|+|++++++++++. .+|.|||+|.
T Consensus        80 ~~dPKimvTTSR~PSsrL~~FaKelkLvf-PN-aqr~n-RG~~~~~~lv~a~ra~~~Td~iivHEhRG~PdgL~vshlPf  156 (290)
T KOG2781|consen   80 EEDPKIMVTTSRDPSSRLKMFAKELKLVF-PN-AQRLN-RGNYVVGELVDAARANGVTDLIIVHEHRGIPDGLVVSHLPF  156 (290)
T ss_pred             CCCCcEEEEeCCCchHHHHHHHHhheEec-cC-hhhhc-ccceeHHHHHHHHHHCCCceEEEEeccCCCCCceEEEecCC
Confidence            45799999999999999999999999998 99 89998 999999999999999999999999999998 7999999999


Q ss_pred             CCeEEEEEeceEehhhhhhhcCCCCCCCCCCCCCcEEEecCCCCCchhhHHHHHHHHhcCCCCCCCCcCCCCCCeEEEEE
Q 026420          109 GPTLTFKIHEYSLAVDVAQSQLRPRCPQDLFKTSPLIVLSGFGTGDQHLKLTTIMFQNIFPAIDINTVKLSTCQRIVLLN  188 (238)
Q Consensus       109 GPTl~F~V~n~~l~~di~~~~~~~~~~g~~~~~~PlLi~ngF~~~~~~lklv~~~fq~mFp~~~~~~~~l~~~~RVvlf~  188 (238)
                      |||+.|.+.|+.+.+||...       |.+....|+||||||++..+  ++++++|..|||.+      ..+.+|||+|.
T Consensus       157 GPTa~Fsl~nvVmRhdip~~-------G~msE~~phlIfdNf~t~lG--~Rv~~iLkhLFP~p------k~ds~Rvvtf~  221 (290)
T KOG2781|consen  157 GPTAFFSLHNVVMRHDIPDI-------GTMSEQKPHLIFDNFTTKLG--KRVKTILKHLFPVP------KDDSKRVVTFA  221 (290)
T ss_pred             CCceEeeeeeeeeccccccc-------ccccccCceEEeccccchHH--HHHHHHHHHhCCCC------cCCcccEEEEe
Confidence            99999999999999999875       55556799999999999885  89999999999953      34889999999


Q ss_pred             ecCCCCeEEEEeeEEEeee
Q 026420          189 YNKDTKLIDFRHYSIRLQP  207 (238)
Q Consensus       189 ~~~~~d~I~fRHY~I~~~~  207 (238)
                      +.  +|.|.||||.|....
T Consensus       222 N~--~DyIsFRhhvy~~~~  238 (290)
T KOG2781|consen  222 NR--NDYISFRHHVYKKTD  238 (290)
T ss_pred             cC--CceEEEEEEEEecCC
Confidence            85  489999999997544

>smart00879 Brix Brix domain

Probab=99.98  E-value=2.8e-31  Score=221.73  Aligned_cols=159  Identities=30%  Similarity=0.473  Sum_probs=134.7

Q ss_pred             EEEcCCCCChhHHHHHHHHhhhcCCCcccccccccCCchhhHHhhccCC-CCceEEEEEecC-CC-CceEEEeCCCCCeE
Q 026420           36 FVFSRGKLPGPLRQLEMDLRKLMLPHTALNLKEKKRNNLKDFLNVAGPM-GVTHFLMLSKTE-SA-PYLRVARTPQGPTL  112 (238)
Q Consensus        36 lVi~~g~~s~~~~~L~~Dlr~lm~P~ta~~lk~rk~n~lkd~~~~a~~~-~~Thlivf~~~~-~~-~~L~I~rlP~GPTl  112 (238)
                      ||++++++++.+++|++||+.++.|+++..   |+++.+.++.+.|... +++++++++.+. +. .+|||+++|+|||+
T Consensus         1 lit~sr~~s~~~r~~~~dL~~~~~~~~~~~---r~~~~~~~~~e~~~~~~~~~~i~v~e~~~k~~p~~L~i~~~~~gp~l   77 (180)
T smart00879        1 LITTSRKPSKRTRQLAKDLRRLFPPSTKIN---RGKNKLNELLEFASEKGNTDLLVVFESSSKGRPLNLTIYRLPNGPTL   77 (180)
T ss_pred             CEEcCCCCCHHHHHHHHHHHHHCCCcEeec---ccCccHHHHHHHHHHcCCccEEEEecccCCCCCceEEEEECCCCCcE
Confidence            689999999999999999999995554332   5566777788777666 777777777763 44 79999999999999


Q ss_pred             EEEEeceEehhhhhhhcCCCCCCCCCCCCCcEEEecCCCCCchhhHHHHHHHHhcCCCCCCCCcCCCCCCeEEEEEecCC
Q 026420          113 TFKIHEYSLAVDVAQSQLRPRCPQDLFKTSPLIVLSGFGTGDQHLKLTTIMFQNIFPAIDINTVKLSTCQRIVLLNYNKD  192 (238)
Q Consensus       113 ~F~V~n~~l~~di~~~~~~~~~~g~~~~~~PlLi~ngF~~~~~~lklv~~~fq~mFp~~~~~~~~l~~~~RVvlf~~~~~  192 (238)
                      +|.+.+|++.+|+......+    ....++|+||||||+++.+  +++++||++|||.+++..++++.++||++|++++ 
T Consensus        78 ~f~i~~v~~~~~~~~~~~~~----~~~~~~P~li~~~~~~~~~--~~~k~~l~~~F~~~~~~~~~~~~~~rvi~f~~~~-  150 (180)
T smart00879       78 DFKILNVSLRKELKGFKTGN----CLTGSRPLLIFNNFFTELG--KLIKELFQDLFPGPPEHKKSLPGLRRVVTFSNQD-  150 (180)
T ss_pred             EEEEECcccHhhhhhhhcCC----CcCCCccEEEECCCCCchH--HHHHHHHHHHCCCCCccccccCCCCEEEEEEecC-
Confidence            99999999999998854321    2246899999999999875  8999999999999999999999999999999964 


Q ss_pred             CCeEEEEeeEEEe
Q 026420          193 TKLIDFRHYSIRL  205 (238)
Q Consensus       193 ~d~I~fRHY~I~~  205 (238)
                       |.||||||+|..
T Consensus       151 -~~I~~R~y~i~~  162 (180)
T smart00879      151 -DYIFFRHYRIKF  162 (180)
T ss_pred             -CEEEEEEEEEEc
Confidence             799999999974

The Brix domain is found in a number of eukaryotic proteins including SSF proteins from yeast and humans, Arabidopsis thaliana Peter Pan-like protein and several hypothetical proteins.

>COG5154 BRX1 RNA-binding protein required for 60S ribosomal subunit biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.98  E-value=1.2e-31  Score=230.22  Aligned_cols=163  Identities=21%  Similarity=0.304  Sum_probs=152.0

Q ss_pred             CCcEEEEcCCCCChhHHHHHHHHhhhcCCCcccccccccCCchhhHHhhccCCCCceEEEEEecCCC-CceEEEeCCCCC
Q 026420           32 IPKSFVFSRGKLPGPLRQLEMDLRKLMLPHTALNLKEKKRNNLKDFLNVAGPMGVTHFLMLSKTESA-PYLRVARTPQGP  110 (238)
Q Consensus        32 ~Pk~lVi~~g~~s~~~~~L~~Dlr~lm~P~ta~~lk~rk~n~lkd~~~~a~~~~~Thlivf~~~~~~-~~L~I~rlP~GP  110 (238)
                      ..+++|+.+++++.+.+|||+||-.+| ||+..+-|++-+..+.++.++|..++|+.++.|++++.. +|||+++.|+||
T Consensus        30 kq~~lilSsRGvsyr~RHL~~Dls~l~-phskke~KlD~kk~l~qLnelaelynCnn~lFFesrkr~Dlyl~~ar~pnGp  108 (283)
T COG5154          30 KQTSLILSSRGVSYRIRHLMKDLSRLV-PHSKKEQKLDMKKNLGQLNELAELYNCNNMLFFESRKRSDLYLMGARIPNGP  108 (283)
T ss_pred             cceEEEEecCCchHHHHHHHHHHHHhC-cccccccccchhhhHHHHHHHHHHhcCCceEEEeecccccceeeeccCCCCC
Confidence            569999999999999999999999998 999888899988899999999999999999999999875 899999999999


Q ss_pred             eEEEEEeceEehhhhhhhcCCCCCCCCCC-CCCcEEEecCCCCCchhhHHHHHHHHhcCCCCCCCCcCCCCCCeEEEEEe
Q 026420          111 TLTFKIHEYSLAVDVAQSQLRPRCPQDLF-KTSPLIVLSGFGTGDQHLKLTTIMFQNIFPAIDINTVKLSTCQRIVLLNY  189 (238)
Q Consensus       111 Tl~F~V~n~~l~~di~~~~~~~~~~g~~~-~~~PlLi~ngF~~~~~~lklv~~~fq~mFp~~~~~~~~l~~~~RVvlf~~  189 (238)
                      |+.|+++|.|||+|+..+       ||++ +++|.|-|+--+...||++.+++++++.|+-|.....+.+++|||++|++
T Consensus       109 tvkF~~~NlhTMdelNft-------gN~lKgsrpvLsFdk~Fe~~pHlk~~Kell~h~F~ip~~arrSkpfiD~v~~f~i  181 (283)
T COG5154         109 TVKFRMHNLHTMDELNFT-------GNSLKGSRPVLSFDKEFEDIPHLKYAKELLEHIFGIPKGARRSKPFIDKVLCFFI  181 (283)
T ss_pred             eEEEEEeccchHhhcCCc-------cccccCCcceEeeccccccchHHHHHHHHHHHhccCCCcccccccchhheEEEEE
Confidence            999999999999999875       7886 59999999886666789999999999999988888899999999999999


Q ss_pred             cCCCCeEEEEeeEEE
Q 026420          190 NKDTKLIDFRHYSIR  204 (238)
Q Consensus       190 ~~~~d~I~fRHY~I~  204 (238)
                        .||.||+|.|.|.
T Consensus       182 --~DgkIWvR~YeI~  194 (283)
T COG5154         182 --LDGKIWVRCYEIG  194 (283)
T ss_pred             --ecCeEEEEEEeec
Confidence              5699999999994

>KOG2780 consensus Ribosome biogenesis protein RPF1, contains IMP4 domain [RNA processing and modification]

Probab=99.97  E-value=3.9e-31  Score=233.28  Aligned_cols=160  Identities=19%  Similarity=0.337  Sum_probs=145.3

Q ss_pred             CCcEEEEcCCCCChhHHHHHHHHhhhcCCCcccccccccCCchhhHHhhccCCCCceEEEEEecCCC-CceEEEeCCCCC
Q 026420           32 IPKSFVFSRGKLPGPLRQLEMDLRKLMLPHTALNLKEKKRNNLKDFLNVAGPMGVTHFLMLSKTESA-PYLRVARTPQGP  110 (238)
Q Consensus        32 ~Pk~lVi~~g~~s~~~~~L~~Dlr~lm~P~ta~~lk~rk~n~lkd~~~~a~~~~~Thlivf~~~~~~-~~L~I~rlP~GP  110 (238)
                      .||+||+++.........|+.+|+.++ ||+...  .|++..++.++++|..+++||++++++.++. ..|.|+++|+||
T Consensus        96 spKvlITt~~~~~~~t~~~~~eL~~ii-PNs~~~--~R~~~~vk~i~~~a~~~eftdlvvV~edRkk~n~L~iihlP~GP  172 (302)
T KOG2780|consen   96 SPKVLITTSKNPKRTTYKFASELLDII-PNSTVK--KRDNYTVKSIVEIAIKREFTDLVVVNEDRKKPNGLKIIHLPNGP  172 (302)
T ss_pred             CccEEEEcCCCCcccHHHHHHHHHHhC-CCceEE--ecCCchHHHHHHHHHHhcCCceEEEecCcCCccceEEEecCCCC
Confidence            699999999999999999999999997 996554  4568899999999999999999999998876 799999999999


Q ss_pred             eEEEEEeceEehhhhhhhcCCCCCCCCCCCCCcEEEecCCCCCchhhHHHHHHHHhcCCCCCCCCcCCCCCCeEEEEEec
Q 026420          111 TLTFKIHEYSLAVDVAQSQLRPRCPQDLFKTSPLIVLSGFGTGDQHLKLTTIMFQNIFPAIDINTVKLSTCQRIVLLNYN  190 (238)
Q Consensus       111 Tl~F~V~n~~l~~di~~~~~~~~~~g~~~~~~PlLi~ngF~~~~~~lklv~~~fq~mFp~~~~~~~~l~~~~RVvlf~~~  190 (238)
                      |++|+++||++.+||...       |+.+.+.|.||+|||+++++  ..|++||++|||..     +.-..+||++|++|
T Consensus       173 T~~Fkls~~~~~kdi~k~-------g~~t~h~PElIlNNFtTrlG--~~v~r~f~sLfp~~-----p~f~gRrvvtFhnQ  238 (302)
T KOG2780|consen  173 TAYFKLSNVVLTKDIKKH-------GRPTSHIPELILNNFTTRLG--MTVGRLFASLFPHD-----PQFTGRRVVTFHNQ  238 (302)
T ss_pred             ceEEEeecccchhhhhhc-------CCcccccchhhhhcccchhh--HHHHHHHHHhCCCC-----ccccceeEEEEEec
Confidence            999999999999999886       66778999999999999996  69999999999973     22389999999997


Q ss_pred             CCCCeEEEEeeEEEeeeccc
Q 026420          191 KDTKLIDFRHYSIRLQPVGV  210 (238)
Q Consensus       191 ~~~d~I~fRHY~I~~~~~g~  210 (238)
                      +  |+|+||||+|.++.-|+
T Consensus       239 r--D~IfFRhhRY~Fkee~~  256 (302)
T KOG2780|consen  239 R--DYIFFRHHRYEFKEEEI  256 (302)
T ss_pred             C--ceEEEEEEEEeeccccc
Confidence            6  89999999999988663

>PRK03972 ribosomal biogenesis protein; Validated

Probab=99.81  E-value=2.8e-19  Score=154.70  Aligned_cols=127  Identities=15%  Similarity=0.251  Sum_probs=105.7

Q ss_pred             EEEEcCCCCChhHHHHHHHHhhhcCCCcccccccccCCchhhHHhhccCCCCceEEEEEecCCC-CceEEEeCCC---CC
Q 026420           35 SFVFSRGKLPGPLRQLEMDLRKLMLPHTALNLKEKKRNNLKDFLNVAGPMGVTHFLMLSKTESA-PYLRVARTPQ---GP  110 (238)
Q Consensus        35 ~lVi~~g~~s~~~~~L~~Dlr~lm~P~ta~~lk~rk~n~lkd~~~~a~~~~~Thlivf~~~~~~-~~L~I~rlP~---GP  110 (238)
                      ++|++|+++|+++++|++||..++ || +..++ |++.+|+|+++.|...|+|++++++|+++. ..|.|+|||.   ||
T Consensus         2 iLITTSr~PS~rtr~F~keL~~v~-Pn-s~~i~-RGk~~lkel~~~A~~~g~TdLIVV~E~rg~P~~L~i~hLP~gP~GP   78 (208)
T PRK03972          2 MLITTSHRPTRRTRSFGHDLERVF-PN-SLYLT-RGKKTIQDLLMEAYDRGYERLLIINVWKGNPLKMTFIKVGPEDWGY   78 (208)
T ss_pred             EEEECCCCccHHHHHHHHHHHHhC-CC-CEEEe-cCCccHHHHHHHHHHCCCCeEEEEecCCCcCCeEEEEcCCCCCCCc
Confidence            589999999999999999999998 99 45555 889999999999999999999999999998 7999999975   55


Q ss_pred             eEEEEEeceEehhhhhhhcCCCCCCCCCCCCCcEEEecCCCCCchhhHHHHHHHHhcCCC
Q 026420          111 TLTFKIHEYSLAVDVAQSQLRPRCPQDLFKTSPLIVLSGFGTGDQHLKLTTIMFQNIFPA  170 (238)
Q Consensus       111 Tl~F~V~n~~l~~di~~~~~~~~~~g~~~~~~PlLi~ngF~~~~~~lklv~~~fq~mFp~  170 (238)
                      |++|+|+|+.+.+||..-     ..|....+.|++|.+||.+..++.+ .+..+.+.+.-
T Consensus        79 Ta~FkLsnV~l~~ei~~~-----~~~~~s~~~p~iItts~kt~~g~~~-~Ak~lA~eLgi  132 (208)
T PRK03972         79 LGYLYLHGIKLQREMGFR-----NLRPIREDMPLVITTAKRVGLDHMA-FAQVFAELTGG  132 (208)
T ss_pred             eEEEEEccEEEHHHcccC-----CCCCccccccEEEEcCCCCCHHHHH-HHHHHHHHhCC
Confidence            999999999999999421     0144556899999999999886533 33344555543

>COG2136 IMP4 Predicted exosome subunit/U3 small nucleolar ribonucleoprotein (snoRNP) component, contains IMP4 domain [Translation, ribosomal structure and biogenesis / RNA processing and modification]

Probab=99.77  E-value=9.8e-18  Score=143.88  Aligned_cols=158  Identities=16%  Similarity=0.224  Sum_probs=134.9

Q ss_pred             CcEEEEcCCCCChhHHHHHHHHhhhcCCCcccccccccCCchhhHHhhccCCCCceEEEEEecCCC-CceEEEeC-CCCC
Q 026420           33 PKSFVFSRGKLPGPLRQLEMDLRKLMLPHTALNLKEKKRNNLKDFLNVAGPMGVTHFLMLSKTESA-PYLRVART-PQGP  110 (238)
Q Consensus        33 Pk~lVi~~g~~s~~~~~L~~Dlr~lm~P~ta~~lk~rk~n~lkd~~~~a~~~~~Thlivf~~~~~~-~~L~I~rl-P~GP  110 (238)
                      |+.+||+|+++|.++++|++||..++ ||+. .++ |++.++.++.+.|...|.+++++++|.++. ..|.+.++ |.||
T Consensus         2 ~~~liTTSRkPS~Rtr~Fak~L~~~l-p~~~-~~~-rg~~~~~el~~~a~~~g~~~l~iv~E~rGnP~~L~f~d~~~~~~   78 (191)
T COG2136           2 PKMLLTTSRKPSRRTRSFAKDLSRVL-PNAY-FLR-RGKKSIIELSEEAIARGATDLLIVGERRGNPARLTFYDLEPEGL   78 (191)
T ss_pred             CcEEEEecCCccHHHHHHHHHHHHhC-Ccce-EEe-cCccchhHHHHHHHhcCCceEEEEEEecCCCcEEEEEEecCCCc
Confidence            89999999999999999999999998 9954 455 578899999999999999999999999998 68999999 9999


Q ss_pred             eEEEEEeceEehhhhhhhcCCCCCCCCCCCCCcEEEecCCCCCchhhHHHHHHHHhc----CCCCCCCCcCCCCCCeEEE
Q 026420          111 TLTFKIHEYSLAVDVAQSQLRPRCPQDLFKTSPLIVLSGFGTGDQHLKLTTIMFQNI----FPAIDINTVKLSTCQRIVL  186 (238)
Q Consensus       111 Tl~F~V~n~~l~~di~~~~~~~~~~g~~~~~~PlLi~ngF~~~~~~lklv~~~fq~m----Fp~~~~~~~~l~~~~RVvl  186 (238)
                      ++.|.+.|+++.+|+...+..      ...+-|++|+|||.+..++ ..+.++|+.+    |++-    .. -....|+.
T Consensus        79 ~~~f~l~~v~l~re~~~~~~~------~~~~~~~~I~~~~~~~~g~-~~~~~~~~~~~~~~f~~~----~~-~~~~~v~~  146 (191)
T COG2136          79 TFSFKLSGVKLRREIPVLGPK------SRLHGPELIFNNFTTLLGF-LKVAEAFSELLLVKFVPN----PA-WEHELVAT  146 (191)
T ss_pred             eEEEEEecceEEEeccccCCc------ccCCCCceeeecccccccc-hhhHHHHHhhcccccccC----cc-cceeeeee
Confidence            999999999999999876321      2347899999999998854 7889999999    6652    11 25678888


Q ss_pred             EEecCCCCeEEEEeeEEEeee
Q 026420          187 LNYNKDTKLIDFRHYSIRLQP  207 (238)
Q Consensus       187 f~~~~~~d~I~fRHY~I~~~~  207 (238)
                      ++.  .++++.||+|......
T Consensus       147 ~~~--~~~f~~~~~~~~~~~~  165 (191)
T COG2136         147 GAN--KGDFKSLRRHRRVFEE  165 (191)
T ss_pred             ccc--cceEEEEEeeeeEeee
Confidence            887  4589999998876654

>KOG3031 consensus Protein required for biogenesis of the ribosomal 60S subunit [Translation, ribosomal structure and biogenesis]

Probab=99.53  E-value=1.3e-14  Score=129.48  Aligned_cols=184  Identities=16%  Similarity=0.256  Sum_probs=149.2

Q ss_pred             hhccCCCCCCCcCCCCCcEEEEcCCCCChhHHHHHHHHhhhcCCCcccccccccCCchhhHHh-----hccCCCCceEEE
Q 026420           17 VKKKQPTVDHITGDKIPKSFVFSRGKLPGPLRQLEMDLRKLMLPHTALNLKEKKRNNLKDFLN-----VAGPMGVTHFLM   91 (238)
Q Consensus        17 ~k~~~~~~~~~~~~~~Pk~lVi~~g~~s~~~~~L~~Dlr~lm~P~ta~~lk~rk~n~lkd~~~-----~a~~~~~Thliv   91 (238)
                      .+++....+++..+.+...+.+....++..+.+.|.|+..+-.|. +.++.  ++|.+..|.+     ..+...-+.+++
T Consensus        12 ~kr~l~kr~~klve~~k~alf~~g~~~~~tl~~vm~dl~alKKp~-~i~~~--rkN~i~pFEd~ssleffseK~D~slfv   88 (307)
T KOG3031|consen   12 AKRALVKREPKLVENHKDALFLPGMKTNKTLLDVMKDLYALKKPL-EIRYN--RKNNIHPFEDPSSLEFFSEKNDCSLFV   88 (307)
T ss_pred             hHHHHHhhchhhchhhhhhhccCchhhchHHHHHHHHHHHhccCc-eeeec--cCCCcccCCCCchHHHHhhhhhhhhhh
Confidence            344455556677777777888888889999999999999999998 56665  5567888754     335566677777


Q ss_pred             EEecCC-C-CceEEEeCCCCCe---EEEEEeceEehhhhhhhcCCCCCCCCCCCCCcEEEecCCCC-CchhhHHHHHHHH
Q 026420           92 LSKTES-A-PYLRVARTPQGPT---LTFKIHEYSLAVDVAQSQLRPRCPQDLFKTSPLIVLSGFGT-GDQHLKLTTIMFQ  165 (238)
Q Consensus        92 f~~~~~-~-~~L~I~rlP~GPT---l~F~V~n~~l~~di~~~~~~~~~~g~~~~~~PlLi~ngF~~-~~~~lklv~~~fq  165 (238)
                      +.++.+ . .+|.|+|+.++-.   +.+.|.||....|+..+.       -..++.|+|+|+|+.= ..+.+++++++|.
T Consensus        89 ~gs~sKKrp~nLv~gR~fd~~vlDMiElgI~~ykslsdF~~~k-------~~~gtKP~l~f~G~~f~~~~~~krlknL~v  161 (307)
T KOG3031|consen   89 LGSHSKKRPNNLVIGRTFDYEVLDMIELGIENYKSLSDFKAAK-------ITEGTKPMLIFQGAVFDQHPEYKRLKNLFV  161 (307)
T ss_pred             hccccccCCCceEEEEecCchhhHHHHHhhhhhhhhhhhhccC-------CCCCCCceEEEecchhccChHHHHHHHHHH
Confidence            777765 4 7999999999998   899999999999998862       1236899999999532 2446899999999


Q ss_pred             hcCCCCCCCCcCCCCCCeEEEEEecCCCCeEEEEeeEEEeeecccc
Q 026420          166 NIFPAIDINTVKLSTCQRIVLLNYNKDTKLIDFRHYSIRLQPVGVS  211 (238)
Q Consensus       166 ~mFp~~~~~~~~l~~~~RVvlf~~~~~~d~I~fRHY~I~~~~~g~s  211 (238)
                      ++|..+.++.+.+..+++|+.|+...+ ..|.||||.+..+.+|-.
T Consensus       162 DfFrge~vd~v~l~Gl~~v~vfta~~~-~~v~~r~Y~lklkKs~~~  206 (307)
T KOG3031|consen  162 DFFRGEKVDKVRLAGLEYVIVFTATEE-TNVLFRVYRLKLKKSGTR  206 (307)
T ss_pred             HHHcCCcccceeeccccEEEEEEeecC-ceeeeeeeeeeeeeccCC
Confidence            999999999999999999999999864 459999999999888765

>COG5106 RPF2 Uncharacterized conserved protein [Function unknown]

Probab=97.42  E-value=0.00018  Score=64.10  Aligned_cols=177  Identities=14%  Similarity=0.220  Sum_probs=129.9

Q ss_pred             hhccCCCCCCCcCCCCCcEEEEcCCCCChhHHHHHHHHhhhcCCCcccccccccCCchhhHHhh------ccCCCCceEE
Q 026420           17 VKKKQPTVDHITGDKIPKSFVFSRGKLPGPLRQLEMDLRKLMLPHTALNLKEKKRNNLKDFLNV------AGPMGVTHFL   90 (238)
Q Consensus        17 ~k~~~~~~~~~~~~~~Pk~lVi~~g~~s~~~~~L~~Dlr~lm~P~ta~~lk~rk~n~lkd~~~~------a~~~~~Thli   90 (238)
                      .|++...+++.-.+.....+.+..-..++.+-+.+-|+-.+-.|. ..++.  ++|++..|...      ...+.+.-.+
T Consensus        12 ~kRAl~kRepklve~~k~AiF~pg~s~~k~lldvi~d~~alkkp~-~i~f~--rkn~ihpfEd~SplEffseknd~~l~v   88 (316)
T COG5106          12 VKRALHKREPKLVEAHKDAIFYPGMSERKTLLDVICDTEALKKPK-EIGFI--RKNTIHPFEDTSPLEFFSEKNDKKLSV   88 (316)
T ss_pred             HHHHHHhcCchhhhhhhheEeccCcccchhhhhhhcchhhhccch-hhccc--cCCcccccccCCHHHHHHHhhhhhhhh
Confidence            346677777777777666666666677888999999999998887 34443  55667666543      4567777777


Q ss_pred             EEEecCCC-CceEEEeCCCCCe---EEEEEeceEehhhhhhhcCCCCCCCCCCCCCcEEEecC--CCCCchhhHHHHHHH
Q 026420           91 MLSKTESA-PYLRVARTPQGPT---LTFKIHEYSLAVDVAQSQLRPRCPQDLFKTSPLIVLSG--FGTGDQHLKLTTIMF  164 (238)
Q Consensus        91 vf~~~~~~-~~L~I~rlP~GPT---l~F~V~n~~l~~di~~~~~~~~~~g~~~~~~PlLi~ng--F~~~~~~lklv~~~f  164 (238)
                      ++++..+. .+|.++|..+--.   +.|.|.+|.+..|+..+       |...+..|.++|.|  |.+ -|..+.++++|
T Consensus        89 l~ts~kKr~hnlt~~R~Fny~~~DMiEl~i~~yksvsdF~~~-------~~~~g~Kpmv~fQg~~fd~-hp~yr~iksLf  160 (316)
T COG5106          89 LFTSVKKRRHNLTIGRAFNYELIDMIELKINRYKSVSDFECA-------GPELGMKPMVVFQGINFDA-HPTYRRIKSLF  160 (316)
T ss_pred             hhhhccccccceeEEeecchHHHHHHHHhhhhhhehhhhhcc-------CCccCCceEEEEecccccc-chHHHHHHHHH
Confidence            88888776 7899999876654   78899999999998775       44557899999988  443 45679999999


Q ss_pred             HhcCCCCCCCCcCCCCCCeEEEEEecC--CCC----eEEEEeeEEE
Q 026420          165 QNIFPAIDINTVKLSTCQRIVLLNYNK--DTK----LIDFRHYSIR  204 (238)
Q Consensus       165 q~mFp~~~~~~~~l~~~~RVvlf~~~~--~~d----~I~fRHY~I~  204 (238)
                      -+.|.....+.........|+.-+-+.  .+.    .+.||-|...
T Consensus       161 lDFFrges~~~ldsagls~Vi~~t~~g~~~d~~plp~v~fRVyk~k  206 (316)
T COG5106         161 LDFFRGESSKVLDSAGLSWVIARTEEGYVLDTYPLPLVVFRVYKTK  206 (316)
T ss_pred             HHHHcCCchhhhhhcceeEEEEEecchhhhccccccceeeeeeecc
Confidence            999987666555556777888877532  111    2678999854

>PRK00933 ribosomal biogenesis protein; Validated

Probab=96.96  E-value=0.0058  Score=51.66  Aligned_cols=82  Identities=13%  Similarity=0.283  Sum_probs=65.1

Q ss_pred             EEEcCCCCChhHHHHHHHHhhhcCCCcccccccccCCchhhHHhhccCCCCceEEEEEecCCC-CceEEEeCCCCCeEEE
Q 026420           36 FVFSRGKLPGPLRQLEMDLRKLMLPHTALNLKEKKRNNLKDFLNVAGPMGVTHFLMLSKTESA-PYLRVARTPQGPTLTF  114 (238)
Q Consensus        36 lVi~~g~~s~~~~~L~~Dlr~lm~P~ta~~lk~rk~n~lkd~~~~a~~~~~Thlivf~~~~~~-~~L~I~rlP~GPTl~F  114 (238)
                      +|+++++++..++++++++-..+  + + .+-.|++.+++++.+.|..   .++++++++++. ..|.|...-.-+.+.+
T Consensus         2 IITTSrkPs~~t~~fAkeLa~~l--n-~-~yv~Rgk~Sl~eL~~~~~~---~~llVV~E~kg~P~~L~iyd~~~~~~~~~   74 (165)
T PRK00933          2 IITTSRKPSQRTRSLVKDLARFL--N-C-KYVNRGKMSLQELLEECEA---RYLLIIGEYKGNPGALKFYDVEGNKLLSY   74 (165)
T ss_pred             EEECCCCCCHHHHHHHHHHHHHh--C-C-EEEccCCccHHHHHHHhcc---CcEEEEECCCCCCceEEEEECCCCEEEEE
Confidence            78999999999999999999997  4 3 3445899999999877654   399999999988 6899999877777766


Q ss_pred             EEeceEehhhh
Q 026420          115 KIHEYSLAVDV  125 (238)
Q Consensus       115 ~V~n~~l~~di  125 (238)
                      .+. +.+..+.
T Consensus        75 ~~~-v~~~~~~   84 (165)
T PRK00933         75 RLS-VKLQREI   84 (165)
T ss_pred             EEE-eeeeccc
Confidence            553 4444333

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	238
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-07

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 51.4 bits (122), Expect = 1e-07
 Identities = 35/255 (13%), Positives = 74/255 (29%), Gaps = 72/255 (28%)

Query: 12  FVKSFVKKKQPTVDHITGDKIPKSFVFSRGKLPGPLRQLEMDLRKLMLPHTALNLKEKKR 71
             KS + K++  +DHI                   +        +L        L  K+ 
Sbjct: 41  MPKSILSKEE--IDHII-------------MSKDAVSGT----LRLFW-----TLLSKQE 76

Query: 72  NNLKDFLNVAGPMGVTHFLMLSKTESAPYLRVARTPQGPTLTFKIHEYSLAVDVAQSQL- 130
             ++ F+             L          +    + P++  +++          +Q+ 
Sbjct: 77  EMVQKFVEEV----------LRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVF 126

Query: 131 ------RPRCPQDL------FKTSPLIVLSG-FGTGDQHL--------KLTTIMFQNIFP 169
                 R +    L       + +  +++ G  G+G   +        K+   M   IF 
Sbjct: 127 AKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIF- 185

Query: 170 AIDINTVKLSTCQRIVL-------LNYNKDTKLID--FRHYSIRLQPVGVSRRLRKFVQS 220
                 + L  C            L Y  D           +I+L+   +   LR+ ++S
Sbjct: 186 -----WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKS 240

Query: 221 HQVPD-LRSLQDVSD 234
               + L  L +V +
Sbjct: 241 KPYENCLLVLLNVQN 255

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	238
2cxh_A	217	Probable BRIX-domain ribosomal biogenesis protein;	99.93
1w94_A	156	MIL, probable BRIX-domain ribosomal biogenesis pro	99.38

>2cxh_A Probable BRIX-domain ribosomal biogenesis protein; 18S rRNA, IMP4, U3 snoRNP, ribosomal biogenesis binding, structural genomics, NPPSFA; 1.80A {Aeropyrum pernix} SCOP: c.51.1.2

Probab=99.93  E-value=1.1e-25  Score=195.37  Aligned_cols=131  Identities=13%  Similarity=0.107  Sum_probs=117.7

Q ss_pred             CCCCcEEEEcCCCCChhHHHHHHHHhhhcCCCcccccccccCCchhhHHhhccCCCCceEEEEEecCCC-CceEEEeCCC
Q 026420           30 DKIPKSFVFSRGKLPGPLRQLEMDLRKLMLPHTALNLKEKKRNNLKDFLNVAGPMGVTHFLMLSKTESA-PYLRVARTPQ  108 (238)
Q Consensus        30 ~~~Pk~lVi~~g~~s~~~~~L~~Dlr~lm~P~ta~~lk~rk~n~lkd~~~~a~~~~~Thlivf~~~~~~-~~L~I~rlP~  108 (238)
                      ...||+||++|+++++++++|++||+.+| ||+ ..++ |++.+|+|+++.|..++||++++++++++. .+|||+|+|.
T Consensus        31 ~~~pKvLITTSr~pS~r~r~fakeL~~~l-Pns-~~i~-Rgk~sLkeL~e~a~~~~~tdlivV~e~rg~p~~L~~~hlP~  107 (217)
T 2cxh_A           31 VGGYRILVTTSRRPSPRIRSFVKDLSATI-PGA-FRFT-RGHYSMEELAREAIIRGADRIVVVGERRGNPGIIRVYAVEG  107 (217)
T ss_dssp             --CCEEEEEESSSCCHHHHHHHHHHHTTS-TTE-EECC-CTTCCHHHHHHHHHHTTEEEEEEEEEETTEEEEEEEEECCS
T ss_pred             CCCCeEEEEcCCCCCHHHHHHHHHHHHHC-CCC-EEee-cCCcCHHHHHHHHHhCCCCEEEEEEecCCCCcEEEEEECCC
Confidence            35899999999999999999999999998 984 5555 888999999999999999999999999987 8999999999


Q ss_pred             C---C-eEEEEEeceEehhhhhhhcCCCCCCCCC-CCCCcEEEecCCCCCchhhHHHHHHHHhcCCCCCC
Q 026420          109 G---P-TLTFKIHEYSLAVDVAQSQLRPRCPQDL-FKTSPLIVLSGFGTGDQHLKLTTIMFQNIFPAIDI  173 (238)
Q Consensus       109 G---P-Tl~F~V~n~~l~~di~~~~~~~~~~g~~-~~~~PlLi~ngF~~~~~~lklv~~~fq~mFp~~~~  173 (238)
                      |   | |++|+|+|+++++||...       |++ ..++|+|+ +||.++  +++++++||++|||.+..
T Consensus       108 G~~~P~Ta~F~I~nv~l~~ei~~~-------g~~~~~~rP~L~-~nF~t~--~g~~i~~~f~~lFp~P~~  167 (217)
T 2cxh_A          108 PERPDNIVSFIVKGVSLSRERRWG-------LPSLRGGEVLVA-RPLDSG--VAVEFADAFVIAFHARLK  167 (217)
T ss_dssp             SSCCEEEEEEEEEEEECHHHHTCC-------CCCCCSCCEEEE-EESSSS--THHHHHHHHHHHHCCBSS
T ss_pred             CCCCCcEEEEEEeeEEehhhhccC-------CCccCCCCceEE-eeecCc--hHHHHHHHHHHHcCCCCC
Confidence            9   9 999999999999999876       444 35899999 999886  478999999999998654

>1w94_A MIL, probable BRIX-domain ribosomal biogenesis protein; archaeal IMP4-BRIX domain, IMP4 domain; 2.0A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.51.1.2

Probab=99.38  E-value=2.6e-12  Score=106.05  Aligned_cols=85  Identities=13%  Similarity=0.129  Sum_probs=75.7

Q ss_pred             cEEEEcCCCCChhHHHHHHHHhhhcCCCcccccccccCCchhhHHhhccCCCCceEEEEEecCCC-CceEEEeCCCCCeE
Q 026420           34 KSFVFSRGKLPGPLRQLEMDLRKLMLPHTALNLKEKKRNNLKDFLNVAGPMGVTHFLMLSKTESA-PYLRVARTPQGPTL  112 (238)
Q Consensus        34 k~lVi~~g~~s~~~~~L~~Dlr~lm~P~ta~~lk~rk~n~lkd~~~~a~~~~~Thlivf~~~~~~-~~L~I~rlP~GPTl  112 (238)
                      |.+|++|+++++++.++++++..++  + +..+. |++.+++++++.|...    +++++++++. ..|.|+|+|.|||+
T Consensus         1 kilITTSr~Ps~~l~~fakeLa~~l--n-~~~v~-Rgk~sl~~L~~~~~~~----~iVV~e~rg~P~~l~i~hlp~gpt~   72 (156)
T 1w94_A            1 HMLLTTSRKPSQRTRSFSQRLSRIM--G-WRYIN-RGKMSLRDVLIEARGP----VAVVSERHGNPARITFLDERGGERG   72 (156)
T ss_dssp             CCEEEECSSCCHHHHHHHHHHHHHH--T-CEECC-CTTCCHHHHHHHHSSC----EEEEEEETTEEEEEEEECTTSCEEE
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHHh--C-CEEEe-eCCcCHHHHHHhcCCC----EEEEEcCCCCCCeEEEEeCCCCCEE
Confidence            5799999999999999999999997  5 55554 8899999999888553    9999999988 79999999999999


Q ss_pred             EEEEeceEehhhhhh
Q 026420          113 TFKIHEYSLAVDVAQ  127 (238)
Q Consensus       113 ~F~V~n~~l~~di~~  127 (238)
                      +|++ |+.+.+|+..
T Consensus        73 ~f~~-nv~l~~~~~~   86 (156)
T 1w94_A           73 YILF-NPSFEMKKPE   86 (156)
T ss_dssp             EEEE-EEEECSSCCC
T ss_pred             EEEE-ceEEcccCcc
Confidence            9998 9999999863

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	238
d2cxha1	180	c.51.1.2 (A:13-192) Probable ribosomal biogenesis	3e-17

>d2cxha1 c.51.1.2 (A:13-192) Probable ribosomal biogenesis protein {Archaeon Aeropyrum pernix [TaxId: 56636]} Length = 180

class: Alpha and beta proteins (a/b)
fold: Anticodon-binding domain-like
superfamily: Class II aaRS ABD-related
family: Brix domain
domain: Probable ribosomal biogenesis protein
species: Archaeon Aeropyrum pernix [TaxId: 56636]

 Score = 74.5 bits (183), Expect = 3e-17
 Identities = 24/179 (13%), Positives = 53/179 (29%), Gaps = 23/179 (12%)

Query: 47  LRQLEMDLRKLMLPHTALNLKEKKRNNLKDFLNVAGPMGVTHFLMLSKTESAPYLRVART 106
           +R    DL   +          +   ++++    A   G    +++ +    P +     
Sbjct: 16  IRSFVKDLSATIPGAFRFT---RGHYSMEELAREAIIRGADRIVVVGERRGNPGIIRVYA 72

Query: 107 PQGP-----TLTFKIHEYSLAVDVAQSQLRPRCPQDLFKTSPLIVLSGFGTGDQHLKLTT 161
            +GP      ++F +   SL+ +           +         + SG            
Sbjct: 73  VEGPERPDNIVSFIVKGVSLSRERRWGL---PSLRGGEVLVARPLDSGVAV---EFADAF 126

Query: 162 I-MFQNIFPAIDINTVKLSTCQRIVLLNYNKDTKLIDFRHYSIRLQPVGVSRRLRKFVQ 219
           +  F            + +     V+ + +  T  + FR+      PVG   RL K  +
Sbjct: 127 VIAFHARLKP-----PEAAGYVEAVIESLDARTVAVTFRYGGA---PVGPMLRLGKPAE 177

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	238
d2cxha1	180	Probable ribosomal biogenesis protein {Archaeon Ae	100.0
d1w94a1	154	Probable ribosomal biogenesis protein {Methanobact	99.87

>d2cxha1 c.51.1.2 (A:13-192) Probable ribosomal biogenesis protein {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: Anticodon-binding domain-like
superfamily: Class II aaRS ABD-related
family: Brix domain
domain: Probable ribosomal biogenesis protein
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=100.00  E-value=6.3e-34  Score=238.82  Aligned_cols=160  Identities=13%  Similarity=0.113  Sum_probs=141.9

Q ss_pred             cEEEEcCCCCChhHHHHHHHHhhhcCCCcccccccccCCchhhHHhhccCCCCceEEEEEecCCCCceEEEeCCCCC---
Q 026420           34 KSFVFSRGKLPGPLRQLEMDLRKLMLPHTALNLKEKKRNNLKDFLNVAGPMGVTHFLMLSKTESAPYLRVARTPQGP---  110 (238)
Q Consensus        34 k~lVi~~g~~s~~~~~L~~Dlr~lm~P~ta~~lk~rk~n~lkd~~~~a~~~~~Thlivf~~~~~~~~L~I~rlP~GP---  110 (238)
                      |+||++|+++|+++++|++||+.+| ||+ . ...|++++|+|++++|..+|+||+++|+|+++.++|+++++|+||   
T Consensus         3 kvLITTSr~ps~~~r~f~kdL~~v~-Pns-~-~~~R~k~~lk~i~~~a~~~~~t~liiv~e~~~~p~l~i~~lP~GP~~~   79 (180)
T d2cxha1           3 RILVTTSRRPSPRIRSFVKDLSATI-PGA-F-RFTRGHYSMEELAREAIIRGADRIVVVGERRGNPGIIRVYAVEGPERP   79 (180)
T ss_dssp             EEEEEESSSCCHHHHHHHHHHHTTS-TTE-E-ECCCTTCCHHHHHHHHHHTTEEEEEEEEEETTEEEEEEEEECCSSSCC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHhC-CCC-E-EeecCCCcHHHHHHHHHHCCCCeEEEEEccCCCCcEEEEECCCCCCCc
Confidence            7999999999999999999999999 994 3 345899999999999999999999999999888999999999999   


Q ss_pred             --eEEEEEeceEehhhhhhhcCCCCCCCCCCCCCcEEEecCCCCCchhhHHHHHHHHhcCCCCCCCCcCCCCCCeEEEEE
Q 026420          111 --TLTFKIHEYSLAVDVAQSQLRPRCPQDLFKTSPLIVLSGFGTGDQHLKLTTIMFQNIFPAIDINTVKLSTCQRIVLLN  188 (238)
Q Consensus       111 --Tl~F~V~n~~l~~di~~~~~~~~~~g~~~~~~PlLi~ngF~~~~~~lklv~~~fq~mFp~~~~~~~~l~~~~RVvlf~  188 (238)
                        |++|+|+|+++.+|+....   .+.|..+.+.|++|||||.++++  +++.++|+.+||++..      ..+||++|+
T Consensus        80 ~~t~~F~l~nv~l~~e~~~~~---~~~~~~t~~~p~lilnnf~t~Lg--~~~~~~f~~lf~~p~~------~~~~vvt~~  148 (180)
T d2cxha1          80 DNIVSFIVKGVSLSRERRWGL---PSLRGGEVLVARPLDSGVAVEFA--DAFVIAFHARLKPPEA------AGYVEAVIE  148 (180)
T ss_dssp             EEEEEEEEEEEECHHHHTCCC---CCCCSCCEEEEEESSSSTHHHHH--HHHHHHHCCBSSCCSS------SCEEEEEEE
T ss_pred             cceEEEEEEEEEEehhhcccc---CCCCCCccccchhHhcccchHHH--HHHHHHHHhhCCCchh------cCcEEEEEE
Confidence              9999999999999997643   22355667899999999999885  6999999999987432      678999999


Q ss_pred             ecCCCCeEEEEeeEEEeeecc
Q 026420          189 YNKDTKLIDFRHYSIRLQPVG  209 (238)
Q Consensus       189 ~~~~~d~I~fRHY~I~~~~~g  209 (238)
                      +++  |.|++|+|.....+.|
T Consensus       149 n~~--d~if~~~~~~~~~~~G  167 (180)
T d2cxha1         149 SLD--ARTVAVTFRYGGAPVG  167 (180)
T ss_dssp             EEE--TTEEEEEEECSSSEEE
T ss_pred             ecC--CeEEEEEEecCCCCCC
Confidence            975  7999999998777776

>d1w94a1 c.51.1.2 (A:1-154) Probable ribosomal biogenesis protein {Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: Anticodon-binding domain-like
superfamily: Class II aaRS ABD-related
family: Brix domain
domain: Probable ribosomal biogenesis protein
species: Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.87  E-value=9e-23  Score=166.34  Aligned_cols=134  Identities=10%  Similarity=0.084  Sum_probs=114.9

Q ss_pred             EEEEcCCCCChhHHHHHHHHhhhcCCCcccccccccCCchhhHHhhccCCCCceEEEEEecCCC-CceEEEeCCCCCeEE
Q 026420           35 SFVFSRGKLPGPLRQLEMDLRKLMLPHTALNLKEKKRNNLKDFLNVAGPMGVTHFLMLSKTESA-PYLRVARTPQGPTLT  113 (238)
Q Consensus        35 ~lVi~~g~~s~~~~~L~~Dlr~lm~P~ta~~lk~rk~n~lkd~~~~a~~~~~Thlivf~~~~~~-~~L~I~rlP~GPTl~  113 (238)
                      +||++|+++|+++++|++||..++ |++  .++ |++..++|+++.|    +|++++++|+++. ..|.| ++|+|||++
T Consensus         1 vLITTSr~PS~rtr~F~keL~~i~-P~~--~~~-Rgk~~lkelv~~~----~tdlivv~E~rg~P~~l~i-h~p~gpt~~   71 (154)
T d1w94a1           1 MLLTTSRKPSQRTRSFSQRLSRIM-GWR--YIN-RGKMSLRDVLIEA----RGPVAVVSERHGNPARITF-LDERGGERG   71 (154)
T ss_dssp             CEEEECSSCCHHHHHHHHHHHHHH-TCE--ECC-CTTCCHHHHHHHH----SSCEEEEEEETTEEEEEEE-ECTTSCEEE
T ss_pred             CEEECCCCccHHHHHHHHHHHHhC-CCe--EEE-cCCCcHHHHHHhC----CCcEEEEECCCCCCceEEE-EeCCCCcEE
Confidence            489999999999999999999998 973  455 8889999999887    6999999999998 57877 999999999


Q ss_pred             EEEeceEehhhhhhhcCCCCCCCCCCCCCcEEEecCCCCCchhhHHHHHHHHhcCCCCCCCCcCCCCCCeEEEEEecCCC
Q 026420          114 FKIHEYSLAVDVAQSQLRPRCPQDLFKTSPLIVLSGFGTGDQHLKLTTIMFQNIFPAIDINTVKLSTCQRIVLLNYNKDT  193 (238)
Q Consensus       114 F~V~n~~l~~di~~~~~~~~~~g~~~~~~PlLi~ngF~~~~~~lklv~~~fq~mFp~~~~~~~~l~~~~RVvlf~~~~~~  193 (238)
                      |.+.|+.+.+|                 +|+|++|||.+.++  ..++++|+.+||...    ....-++|++|+++  +
T Consensus        72 f~l~~v~l~~e-----------------~p~li~~~f~t~lg--~~v~~~L~~lf~~~~----~~~~~~~~itf~n~--~  126 (154)
T d1w94a1          72 YILFNPSFEMK-----------------KPELADKAVRVSSC--PPGSEGLCNLMGLEV----DESSSRDAWSIRTD--E  126 (154)
T ss_dssp             EEEEEEEECSS-----------------CCCCSSCCCEESCC--CTTCHHHHHHHTCEE----CCSCCTTEEEEECC--S
T ss_pred             EEEeeEEcccc-----------------CCcCcccccccccc--hhHHHHHHHHcCCCh----hhcceeeEEEEecC--C
Confidence            99999987643                 68899999999886  688999999999742    22233459999985  4


Q ss_pred             CeEEEEeeE
Q 026420          194 KLIDFRHYS  202 (238)
Q Consensus       194 d~I~fRHY~  202 (238)
                      |.|+++||-
T Consensus       127 d~i~~~~~~  135 (154)
T d1w94a1         127 EYAWVMELM  135 (154)
T ss_dssp             SSSEEEEEE
T ss_pred             CEEEEEEEe
Confidence            899999993