Citrus Sinensis ID: 026434

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------24
Protein Sequence
MKELLGLKHLKVLSWSFGSSLAVQKFLKYPKLVSITQSVGVYQCRSPPFNVFHLAYMENLQELELEYCNLEEMKIDSTDEVKKLFQSGFRSLNTVHVFYCQKAKDLTWLVFVQNLKKLRIEFCDDVEEIIGVDKLRDISEIIGSEHNFFAQLEYLTISWGINLKGVYPNPLPFPKLKKIKVRGCRHLKKLPLNSSSAKERRVVIEGSKKWWEELQWEDQATQNAFSSGVVLRDDYEYV
Secondary Structure (PSIPRED)
ccccccccccccEEEEEcccccHHcccccccccccccEEEEEEccccccccccccccccccEEEEcccccccEEEccccccccccccccccccEEEEEccccccccccccccccccEEEEEccccccEEccccccccccccccccccccccccccccccccccccccccccccccccEEEEEcccccccccccccccccccEEEEccHHcccccccccHHHHHHccccEEEccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHcEEEEccHHHHHHHHccHHHHHHHHHHcHHcccccccEEcccHHHHcccEEEEEccccEEEEEEccccccccccccccccEEEEEcccccHcccEHHHEcccccEEEEEccHHHHHHHcccccccccccccccccccHHHHEEEHcccHHHHHHHccccccccccEEEEEccccccccccccccccccEEEEEccHHHHHHcccccHHHHHHccccEEEccccccc
Coil and Loop (DISEMBL)
mkellglkhlkvlswsfgsSLAVQKFLKYPKLVSITQSvgvyqcrsppfnvFHLAYMENLQELELEYCNLEEMKIDSTDEVKKLFQSGFRSLNTVHVFYCQKAKDLTWLVFVQNLKKLRIEFCDDVEEIIGVDKLRDISEIIGSEHNFFAQLEYLTISwginlkgvypnplpfpklkkikvrgcrhlkklplnsssakERRVVIEGSKKWWEELQWEDQATQNAFSsgvvlrddyeyv
Flexible Loop (DISEMBL)
mkellglkhlkvlsWSFGSSLAVQKFLKYPKLVSITQSVGVYQCRSPPFNVFHLAYMENLQELELEYCNLEEMKIDSTDEVKKLFQSGFRSLNTVHVFYCQKAKDLTWLVFVQNLKKLRIEFCDDVEEIIGVDKLRDISEIIGSEHNFFAQLEYLTISWGINLKGVYPNPLPFPKLKKIKVRGCRhlkklplnsssakerrVVIEGSKKWWEELQWEdqatqnafssgvvlrddyeyv
Low Complexity Region (SEG)
MKELLGLKHLKVLSWSFGSSLAVQKFLKYPKLVSITQSVGVYQCRSPPFNVFHLAYMENLQELELEYCNLEEMKIDSTDEVKKLFQSGFRSLNTVHVFYCQKAKDLTWLVFVQNLKKLRIEFCDDVEEIIGVDKLRDISEIIGSEHNFFAQLEYLTISWGINLKGVYPNPLPFPKLKKIKVRGCRHLKKLPLNSSSAKERRVVIEGSKKWWEELQWEDQATQNAFSSGVVLRDDYEYV
Disordered region (IsUnstruct)
***LLGLKHLKVLSWSFGSSLAVQKFLKYPKLVSITQSVGVYQCRSPPFNVFHLAYMENLQELELEYCNLEEMKIDSTDEVKKLFQSGFRSLNTVHVFYCQKAKDLTWLVFVQNLKKLRIEFCDDVEEIIGVDKLRDISEIIGSEHNFFAQLEYLTISWGINLKGVYPNPLPFPKLKKIKVRGCRHLKKLPL********RVVIEGSKKWWEELQWEDQATQNAFSSGVVL*******
Disordered Region (DISOPRED)
MKELLGLKHLKVLSWSFGSSLAVQKFLKYPKLVSITQSVGVYQCRSPPFNVFHLAYMENLQELELEYCNLEEMKIDSTDEVKKLFQSGFRSLNTVHVFYCQKAKDLTWLVFVQNLKKLRIEFCDDVEEIIGVD*************NFFAQLEYLTISWGINLKGVYPNPLPFPKLKKIKVRGCRHLKKLP************IEGSKKWWEELQWEDQATQNAFSSGVVLRDDYEYV
Disordered Region (DISEMBL)
MKELLGLKHLKVLSWSFGSSLAVQKFLKYPKLVSITQSVGVYQCRSPPFNVFHLAYMENLQELELEYCNLEEMKIDSTDEVKKLFQSGFRSLNTVHVFYCQKAKDLTWLVFVQNLKKLRIEFCDDVEEIIGVDKLRDISEIIGSEHNFFAQLEYLTISWGINLKGVYPNPLPFPKLKKIKVRGCRHLKKLPLN*********VIEGSKKWWEELQWEDQATQNAFSSGVVLRDDYEYV
Disordered Region (DISPRO)
MKELLGLKHLKVLSWSFGSSLAVQKFLKYPKLVSITQSVGVYQCRSPPFNVFHLAYMENLQELELEYCNLEEMKIDSTDEVKKLFQSGFRSLNTVHVFYCQKAKDLTWLVFVQNLKKLRIEFCDDVEEIIGVDKL********SEHNFFAQLEYLTISWGINLKGVYPNPLPFPKLKKIKVRGCRHLKKLPLNSSSAKERRVVIEGSKKWWEELQWEDQATQNAFSSGVVLRDD**YV
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKELLGLKHLKVLSWSFGSSLAVQKFLKYPKLVSITQSVGVYQCRSPPFNVFHLAYMENLQELELEYCNLEEMKIDSTDEVKKLFQSGFRSLNTVHVFYCQKAKDLTWLVFVQNLKKLRIEFCDDVEEIIGVDKLRDISEIIGSEHNFFAQLEYLTISWGINLKGVYPNPLPFPKLKKIKVRGCRHLKKLPLNSSSAKERRVVIEGSKKWWEELQWEDQATQNAFSSGVVLRDDYEYV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	238	2.2.26 [Sep-21-2011]
O64973	889	Disease resistance protei	yes	no	0.928	0.248	0.363	1e-27
Q8RXS5	888	Probable disease resistan	no	no	0.865	0.231	0.331	3e-26
P60838	894	Probable disease resistan	no	no	0.844	0.224	0.354	1e-22
Q9FLB4	874	Putative disease resistan	no	no	0.936	0.255	0.306	2e-21
Q9C8T9	898	Putative disease resistan	no	no	0.890	0.236	0.316	3e-21
P60839	884	Probable disease resistan	no	no	0.827	0.222	0.349	4e-21
O64789	925	Probable disease resistan	no	no	0.886	0.228	0.326	1e-20
Q9SH22	884	Probable disease resistan	no	no	0.878	0.236	0.290	2e-20
O23317	719	Probable disease resistan	no	no	0.718	0.237	0.355	8e-20
Q8L3R3	885	Disease resistance protei	no	no	0.886	0.238	0.336	1e-19

>sp|O64973|RPS5_ARATH Disease resistance protein RPS5 OS=Arabidopsis thaliana GN=RPS5 PE=1 SV=2

 Score =  123 bits (308), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 84/231 (36%), Positives = 120/231 (51%), Gaps = 10/231 (4%)

Query: 1   MKELLGLKHLKVLSWSFGSSLAVQKFLKYPKLVSITQSVGVYQCRSPPFNVFHLAYMENL 60
           +KEL  L+HL+V++    SSL  +  L   +LV   + V     +     V  L  M NL
Sbjct: 652 VKELQLLEHLEVITLDISSSLVAEPLLCSQRLVECIKEVDFKYLKEESVRVLTLPTMGNL 711

Query: 61  QELELEYCNLEEMKIDSTDEVKKLFQS----GFRSLNTVHVFYCQKAKDLTWLVFVQNLK 116
           ++L ++ C + E+KI+ T       +S     F +L+ V +  C   KDLTWL+F  NL 
Sbjct: 712 RKLGIKRCGMREIKIERTTSSSSRNKSPTTPCFSNLSRVFIAKCHGLKDLTWLLFAPNLT 771

Query: 117 KLRIEFCDDVEEIIGVDKLRDISEIIGSEHNFFAQLEYLTISWGINLKGVYPNPLPFPKL 176
            L + F  +VE+II  +K  + S  I      F +LE L +     LK +Y   L FP L
Sbjct: 772 FLEVGFSKEVEDIISEEKAEEHSATIVP----FRKLETLHLFELRGLKRIYAKALHFPCL 827

Query: 177 KKIKVRGCRHLKKLPLNSSS--AKERRVVIEGSKKWWEELQWEDQATQNAF 225
           K I V  C  L+KLPL+S S  A E  V+  G ++W E ++WEDQATQ  F
Sbjct: 828 KVIHVEKCEKLRKLPLDSKSGIAGEELVIYYGEREWIERVEWEDQATQLRF 878

Disease resistance (R) protein that specifically recognizes the avrPphB type III effector avirulence protein from Pseudomonas syringae. Also confers resistance against Hyaloperonospora parasitica (downy mildew). Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. Requires PBS1 to trigger the defense reaction against avrPphB. Probably triggers the defense mechanism when PBS1 is cleaved by avrPphB, suggesting that it detects indirectly the protease activity of avrPphB, and possibly binds to the cleaved RPS5.
Arabidopsis thaliana (taxid: 3702)

>sp|Q8RXS5|DRL40_ARATH Probable disease resistance protein At5g63020 OS=Arabidopsis thaliana GN=At5g63020 PE=2 SV=2

 Score =  119 bits (297), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 73/220 (33%), Positives = 119/220 (54%), Gaps = 14/220 (6%)

Query: 12  VLSWSFGSSLAVQKFLKYPKLVSITQSVGVYQCRSPPFNVFHLAYMENLQELELEYCNLE 71
            L+ + G +  +++FL   +L S T+++ +         +  +A M++LQEL     ++ 
Sbjct: 657 TLTITLGLASILEQFLSNQRLASCTRALRIENLNPQSSVISFVATMDSLQELHFADSDIW 716

Query: 72  EMKIDSTDEVKKLF----QSGFRSLNTVHVFYCQKAKDLTWLVFVQNLKKLRIEFCDDVE 127
           E+K+   + V  L      + F +L+ V + +C + +DLTWL+F  NL  LR+    D++
Sbjct: 717 EIKVKRNETVLPLHIPTTTTFFPNLSQVSLEFCTRLRDLTWLIFAPNLTVLRVISASDLK 776

Query: 128 EIIGVDKLRDISEIIGSEHNF--FAQLEYLTISWGINLKGVYPNPLPFPKLKKIKVRGCR 185
           E+I  +K          + N   F +L+ L +     LK ++  PLPFP L+KI V GC 
Sbjct: 777 EVINKEK--------AEQQNLIPFQELKELRLENVQMLKHIHRGPLPFPCLQKILVNGCS 828

Query: 186 HLKKLPLNSSSAKERRVVIEGSKKWWEELQWEDQATQNAF 225
            L+KLPLN +S     +VIE  KKW E L+WED+AT+  F
Sbjct: 829 ELRKLPLNFTSVPRGDLVIEAHKKWIEILEWEDEATKARF 868

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|P60838|DRL1_ARATH Probable disease resistance protein At1g12280 OS=Arabidopsis thaliana GN=At1g12280 PE=3 SV=1

 Score =  106 bits (265), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 78/220 (35%), Positives = 112/220 (50%), Gaps = 19/220 (8%)

Query: 16  SFGSSLAVQKFLKYPKLVSITQSVGVYQCRSPPFNVFHLAYMENLQELELEYCNLEEMKI 75
           S  SSL V+K L  P+LV   Q + +   +     V  L  M+NL ++ +  C + E+KI
Sbjct: 667 SIKSSLVVEKLLNAPRLVKCLQILVLRGVQEESSGVLTLPDMDNLNKVIIRKCGMCEIKI 726

Query: 76  DSTDEVKKLFQSGFRS--------LNTVHVFYCQKAKDLTWLVFVQNLKKLRIEFCDDVE 127
               E K L  S  RS        L+TVH+  C   KDLTWL+F  NL  L +   + VE
Sbjct: 727 ----ERKTLSLSSNRSPKTQFLHNLSTVHISSCDGLKDLTWLLFAPNLTSLEVLDSELVE 782

Query: 128 EIIGVDKLRDISEIIGSEHNFFAQLEYLTISWGINLKGVYPNPLPFPKLKKIKVRGCRHL 187
            II  +K   +S II      F +LE L +     L+ +Y  PL FP LK I +  C  L
Sbjct: 783 GIINQEKAMTMSGIIP-----FQKLESLRLHNLAMLRSIYWQPLSFPCLKTIHITKCPEL 837

Query: 188 KKLPLNSSSA--KERRVVIEGSKKWWEELQWEDQATQNAF 225
           +KLPL+S  A   E  V+    ++W E ++W+++AT+  F
Sbjct: 838 RKLPLDSEIAIRDEELVIKYQEEEWLERVEWDNEATRLRF 877

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FLB4|DRL31_ARATH Putative disease resistance protein At5g05400 OS=Arabidopsis thaliana GN=At5g05400 PE=2 SV=1

 Score =  102 bits (254), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 72/235 (30%), Positives = 119/235 (50%), Gaps = 12/235 (5%)

Query: 1   MKELLGLKHLKVLSWSFGSSLAVQKFLKYPKLVSITQSVGV-----YQCRSPPFNVFHLA 55
           ++++  +KHL +L+ +  +S  ++ FL   +  S T+ + +     YQ    P      +
Sbjct: 639 VRQIQAMKHLYLLTITLRNSSGLEIFLGDTRFSSYTEGLTLDEQSYYQSLKVPLATISSS 698

Query: 56  YMENLQELELEYCNLEEMKIDSTDEVKKLFQS--GFRSLNTVHVFYCQKAKDLTWLVFVQ 113
               +Q+  +    +E    + ++ V    +    F +L  V +  C   KDLTWLVF  
Sbjct: 699 RFLEIQDSHIPKIEIEGSSSNESEIVGPRVRRDISFINLRKVRLDNCTGLKDLTWLVFAP 758

Query: 114 NLKKLRIEFCDDVEEIIGVD---KLRDISEIIGSEHNFFAQLEYLTISWGINLKGVYPNP 170
           +L  L +    D+E II      +L+   E+ G     F +LE+LT+     LK +Y +P
Sbjct: 759 HLATLYVVCLPDIEHIISRSEESRLQKTCELAGVIP--FRELEFLTLRNLGQLKSIYRDP 816

Query: 171 LPFPKLKKIKVRGCRHLKKLPLNSSSAKERRVVIEGSKKWWEELQWEDQATQNAF 225
           L F KLK+I ++ C  L KLPL+S SA ++ VVI   ++W + LQWED AT+  F
Sbjct: 817 LLFGKLKEINIKSCPKLTKLPLDSRSAWKQNVVINAEEEWLQGLQWEDVATKERF 871

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C8T9|DRL19_ARATH Putative disease resistance protein At1g63350 OS=Arabidopsis thaliana GN=At1g63350 PE=2 SV=1

 Score =  102 bits (253), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 74/234 (31%), Positives = 123/234 (52%), Gaps = 22/234 (9%)

Query: 1   MKELLGLKHLKVLSWSFGS-SLAVQKFLKYPKLVSITQSVGVYQCRSPPFNVFHL---AY 56
           +KEL  L+HL+VL+ +    +L   +FL   +L+S  + + +    +   N   +     
Sbjct: 650 VKELEALEHLEVLTTTIDDCTLGTDQFLSSHRLMSCIRFLKISNNSNRNRNSSRISLPVT 709

Query: 57  MENLQELELEYCNLEEMKIDSTDEVKKLFQSGFRSLNTVHVFYCQKAKDLTWLVFVQNLK 116
           M+ LQE  +E+C+  E+K+             F SL  V++  C++ ++LT+L+F  NLK
Sbjct: 710 MDRLQEFTIEHCHTSEIKMGRI--------CSFSSLIEVNLSNCRRLRELTFLMFAPNLK 761

Query: 117 KLRIEFCDDVEEIIGVDKLRDISEIIGSEHNF--FAQLEYLTISWGINLKGVYPNPLPFP 174
           +L +   + +E+II  +K  D     G +     F +L  L +     LK +Y +PLPFP
Sbjct: 762 RLHVVSSNQLEDIINKEKAHD-----GEKSGIVPFPKLNELHLYNLRELKNIYWSPLPFP 816

Query: 175 KLKKIKVRGCRHLKKLPLNSSSAKERR---VVIEGSKKWWEELQWEDQATQNAF 225
            L+KI V GC +LKKLPL+S S K      ++     +W   ++WED+AT+  F
Sbjct: 817 CLEKINVMGCPNLKKLPLDSKSGKHGGNGLIITHREMEWITRVEWEDEATKTRF 870

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|P60839|DRL2_ARATH Probable disease resistance protein At1g12290 OS=Arabidopsis thaliana GN=At1g12290 PE=2 SV=1

 Score =  101 bits (252), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 74/212 (34%), Positives = 112/212 (52%), Gaps = 15/212 (7%)

Query: 19  SSLAVQKFLKYPKLVSITQSVGVYQCRSPPFNVFHLAYMENLQELELEYCNLEEMKIDST 78
           SS A+++ L   +LV   Q V V         +  L  + +L+E+ +  C + ++ I+  
Sbjct: 672 SSSALEQLLCSHRLVRCLQKVSVKYLDEESVRILTLPSIGDLREVFIGGCGMRDIIIERN 731

Query: 79  DEVKKLFQSGFRSLNTVHVFYCQKAKDLTWLVFVQNLKKLRIEFCDDVEEIIGVDKLRDI 138
                L    F +L+ V +  C   KDLTWL+F  NL  L +     +EEII  +K    
Sbjct: 732 ---TSLTSPCFPNLSKVLITGCNGLKDLTWLLFAPNLTHLNVWNSRQIEEIISQEK-AST 787

Query: 139 SEIIGSEHNFFAQLEYLTISWGI-NLKGVYPNPLPFPKLKKIKVRG-CRHLKKLPLNSSS 196
           ++I+      F +LEYL + W +  LK +Y NPLPFP L +I V+  CR L KLPL+S S
Sbjct: 788 ADIVP-----FRKLEYLHL-WDLPELKSIYWNPLPFPCLNQINVQNKCRKLTKLPLDSQS 841

Query: 197 ---AKERRVVIEGSKKWWEELQWEDQATQNAF 225
              A E  V+  G ++W E ++WED+AT+  F
Sbjct: 842 CIVAGEELVIQYGDEEWKERVEWEDKATRLRF 873

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|O64789|DRL18_ARATH Probable disease resistance protein At1g61310 OS=Arabidopsis thaliana GN=At1g61310 PE=2 SV=1

 Score =  100 bits (248), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 76/233 (32%), Positives = 122/233 (52%), Gaps = 22/233 (9%)

Query: 1   MKELLGLKHLKVLSWSFGSSLAVQKFLKYPKLVSITQSVGVYQCRSPPFNVFHLAYMENL 60
           +KEL  L++L+ L+ +  + L +    +  K++SI    G  Q    PF++  LA MENL
Sbjct: 659 LKELQQLENLQDLAITLSAEL-ISLDQRLAKVISILGIEGFLQ---KPFDLSFLASMENL 714

Query: 61  QELELEYCNLEEMKIDSTDEVKKLFQSG-----FRSLNTVHVFYCQKAKDLTWLVFVQNL 115
             L ++     E+K   ++              F +L+ + +  C   KDLTW++F  NL
Sbjct: 715 SSLWVKNSYFSEIKCRESETDSSYLHINPKIPCFTNLSRLDIVKCHSMKDLTWILFAPNL 774

Query: 116 KKLRIEFCDDVEEIIGVDKLRDISEIIGSEHNFFAQLEYLTISWGINLKGVYPNPLPFPK 175
             L IE   +V EII  +K  +++ I       F +LE L + +   L+ +Y +PLPFP 
Sbjct: 775 VVLFIEDSREVGEIINKEKATNLTSITP-----FLKLERLILCYLPKLESIYWSPLPFPL 829

Query: 176 LKKIKVRGCRHLKKLPLNSSSA---KERRVVIEGSKKWWEELQWEDQATQNAF 225
           L  I V  C  L+KLPLN++SA   +E R+++     +  EL+WED+ T+N F
Sbjct: 830 LLNIDVEECPKLRKLPLNATSAPKVEEFRILM-----YPPELEWEDEDTKNRF 877

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SH22|DRL20_ARATH Probable disease resistance protein At1g63360 OS=Arabidopsis thaliana GN=At1g63360 PE=2 SV=1

 Score = 99.0 bits (245), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 68/234 (29%), Positives = 126/234 (53%), Gaps = 25/234 (10%)

Query: 1   MKELLGLKHLKVLSWSFGSSLAVQKFLKYPKLVSITQSVGVYQCRSPPFNVFHLAYM--- 57
           +KEL  L+HL++L+ +       ++FL   +L+S ++ + +Y       N  HL  +   
Sbjct: 657 VKELETLEHLEILTTTIDPR--AKQFLSSHRLLSHSRLLEIYGSSVSSLN-RHLESLSVS 713

Query: 58  -ENLQELELEYCNLEEMKIDSTDEVKKLFQSGFRSLNTVHVFYCQKAKDLTWLVFVQNLK 116
            + L+E +++ C++ E+K+             F SL  V++F C+  ++LT+L+F   ++
Sbjct: 714 TDKLREFQIKSCSISEIKMGGI--------CNFLSLVDVNIFNCEGLRELTFLIFAPKIR 765

Query: 117 KLRIEFCDDVEEIIGVDKLRDISEIIGSEHNF--FAQLEYLTISWGINLKGVYPNPLPFP 174
            L +    D+E+II  +K  +     G E     F +L +LT+     LK +Y  PLPF 
Sbjct: 766 SLSVWHAKDLEDIINEEKACE-----GEESGILPFPELNFLTLHDLPKLKKIYWRPLPFL 820

Query: 175 KLKKIKVRGCRHLKKLPLNSSSAKERR---VVIEGSKKWWEELQWEDQATQNAF 225
            L++I +R C +L+KLPL+S+S K+     ++     +W+E ++W D+AT+  F
Sbjct: 821 CLEEINIRECPNLRKLPLDSTSGKQGENGCIIRNKDSRWFEGVKWADEATKKRF 874

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|O23317|DRL24_ARATH Probable disease resistance protein At4g14610 OS=Arabidopsis thaliana GN=At4g14610 PE=3 SV=1

 Score = 97.4 bits (241), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 64/180 (35%), Positives = 98/180 (54%), Gaps = 9/180 (5%)

Query: 49  FNVFHLAYMENLQELELEYCNLEEMKIDSTDEVKKLFQSGFRSLNTVHVFYCQKAKDLTW 108
           F +     M N++ + +  C ++E+K++          S F SL+ V +  C   K+LTW
Sbjct: 537 FKILTFPSMCNIRRIGIWKCGMKEIKVEMRT------SSCFSSLSKVVIGQCDGLKELTW 590

Query: 109 LVFVQNLKKLRIEFCDDVEEIIGVDKLRDISEIIGSEHNFFAQLEYLTISWGINLKGVYP 168
           L+F  NL  L   F + +E+II  +K   +++   S    F +LE L++S    LK +Y 
Sbjct: 591 LLFAPNLTYLDARFAEQLEDIISEEKAASVTDENASIIIPFQKLECLSLSDLPKLKSIYW 650

Query: 169 NPLPFPKLKKIKVR-GCRHLKKLPLNSSS--AKERRVVIEGSKKWWEELQWEDQATQNAF 225
           +PL FP+L ++ V+  C  LKKLPLNS S  A    VV  G  KW E ++WED+AT+  F
Sbjct: 651 SPLSFPRLSELAVQEHCPKLKKLPLNSKSGTAGVELVVKYGENKWLEGVEWEDKATELRF 710

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8L3R3|RFL1_ARATH Disease resistance protein RFL1 OS=Arabidopsis thaliana GN=RFL1 PE=3 SV=2

 Score = 97.1 bits (240), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 74/220 (33%), Positives = 107/220 (48%), Gaps = 9/220 (4%)

Query: 19  SSLAVQKFLKYPKLVSITQSVGVYQCRSPP---FNVFHLAYMENLQELELEYCNLEEMKI 75
           SS  V +   YP++    Q + +      P     V  L  + NL  + +  C + E+ I
Sbjct: 669 SSGLVGELFCYPRVGRCIQHIYIRDHWERPEESVGVLVLPAIHNLCYISIWNCWMWEIMI 728

Query: 76  DSTDEVKKLFQSGFRSLNTVHVFYCQKAKDLTWLVFVQNLKKLRIEFCDDVEEIIGVDKL 135
           + T   K L    F +L+ V +  C   KDLTWL+F  NL  LR+  C  +E+II  +K 
Sbjct: 729 EKTPWKKNLTNPNFSNLSNVRIEGCDGLKDLTWLLFAPNLINLRVWGCKHLEDIISKEKA 788

Query: 136 RDISEIIGSEHNFFAQLEYLTISWGINLKGVYPNPLPFPKLKKIKV-RGCRHLKKLPLNS 194
             + E    E   F +LE L +     LK +Y N LPF +L+ + +   C  L+KLPL+S
Sbjct: 789 ASVLE---KEILPFQKLECLNLYQLSELKSIYWNALPFQRLRCLDILNNCPKLRKLPLDS 845

Query: 195 SSA--KERRVVIEGSKKWWEELQWEDQATQNAFSSGVVLR 232
            S    E  V+    KKW E ++WED+ATQ  F     LR
Sbjct: 846 KSVVKVEEFVIKYKEKKWIERVEWEDEATQYRFLPTCRLR 885

Disease resistance (R) protein.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	238
24461866	890	NBS-LRR type disease resistance protein	0.924	0.247	0.425	9e-41
24461865	892	NBS-LRR type disease resistance protein	0.928	0.247	0.431	3e-40
24461861	890	NBS-LRR type disease resistance protein	0.882	0.235	0.450	8e-40
24461864	899	NBS-LRR type disease resistance protein	0.911	0.241	0.427	2e-37
24461863	889	NBS-LRR type disease resistance protein	0.936	0.250	0.419	4e-32
224122896	820	cc-nbs-lrr resistance protein [Populus t	0.886	0.257	0.369	8e-32
225443158	903	PREDICTED: probable disease resistance p	0.928	0.244	0.363	1e-28
255553059	812	Disease resistance protein RFL1, putativ	0.936	0.274	0.391	2e-28
296088271	565	unnamed protein product [Vitis vinifera]	0.911	0.384	0.375	6e-28
147782477	1377	hypothetical protein VITISV_002420 [Viti	0.941	0.162	0.374	1e-27

>gi|24461866|gb|AAN62353.1|AF506028_20 NBS-LRR type disease resistance protein [Citrus trifoliata]

 Score =  172 bits (436), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 97/228 (42%), Positives = 146/228 (64%), Gaps = 8/228 (3%)

Query: 1   MKELLGLKHLKVLSWSFGSSLAVQKFLKYPKLVSITQSVGVYQC--RSPPFNVFHLAYME 58
           ++ELLGLK+L+V+S++  SS  +Q FL   KL S T+++ + QC   S    V  LA ++
Sbjct: 662 VEELLGLKYLEVISFTLRSSHGLQSFLSSHKLRSCTRAL-LLQCFNDSTSLEVSALADLK 720

Query: 59  NLQELELEYCN-LEEMKIDSTDEVKKLFQSGFRSLNTVHVFYCQKAKDLTWLVFVQNLKK 117
            L  L +  C  LEE+K+D T EV++     F SL  V +  C K KDLT+LVF  NL+ 
Sbjct: 721 QLNRLWITECKKLEELKMDYTREVQQFV---FHSLKKVEILACSKLKDLTFLVFAPNLES 777

Query: 118 LRIEFCDDVEEIIGVDKLRDISEIIGSEHNFFAQLEYLTISWGINLKGVYPNPLPFPKLK 177
           + +  C  +EE++ + K  ++ E++ +  N FA+L+ L +    NLK +Y  PLPFP LK
Sbjct: 778 IELMGCPAMEEMVSMGKFAEVPEVVAN-LNPFAKLQNLKLFGATNLKSIYWKPLPFPHLK 836

Query: 178 KIKVRGCRHLKKLPLNSSSAKERRVVIEGSKKWWEELQWEDQATQNAF 225
            +    C  LKKLPL+S+SA+ER +VI G+++WWE+L+W D+AT+NAF
Sbjct: 837 SMSFSHCYKLKKLPLDSNSARERNIVISGTRRWWEQLEWVDEATRNAF 884

Source: Citrus trifoliata

Species: Citrus trifoliata

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|24461865|gb|AAN62352.1|AF506028_19 NBS-LRR type disease resistance protein [Citrus trifoliata]

 Score =  171 bits (432), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 98/227 (43%), Positives = 144/227 (63%), Gaps = 6/227 (2%)

Query: 1   MKELLGLKHLKVLSWSFGSSLAVQKFLKYPKLVSITQSVGVYQCR-SPPFNVFHLAYMEN 59
           ++ELLGLKHL+V++ +  SS  +Q FL   KL S TQ++ +   + S    V  LA ++ 
Sbjct: 663 VEELLGLKHLEVITLTLRSSYGLQSFLNSHKLRSCTQALLLQHFKDSTSLEVSALADLKQ 722

Query: 60  LQELEL-EYCNLEEMKIDSTDEVKKLFQSGFRSLNTVHVFYCQKAKDLTWLVFVQNLKKL 118
           L  L++     LEE+K+D  +EV+   Q  FRSLN V +  C + KDLT+LVF  NLK +
Sbjct: 723 LNRLQIANSVILEELKMDYAEEVQ---QFAFRSLNMVEICNCIQLKDLTFLVFAPNLKSI 779

Query: 119 RIEFCDDVEEIIGVDKLRDISEIIGSEHNFFAQLEYLTISWGINLKGVYPNPLPFPKLKK 178
           ++  C  +EEI    K  ++ E++ +  N F +L+ L ++   NLK +Y   LPFP LK 
Sbjct: 780 KVGICHAMEEIASEGKFAEVPEVMAN-LNPFEKLQNLEVAGARNLKSIYWKSLPFPHLKA 838

Query: 179 IKVRGCRHLKKLPLNSSSAKERRVVIEGSKKWWEELQWEDQATQNAF 225
           +    C+ LKKLPL+S+SAKER++VI G + W E+LQWED+AT+NAF
Sbjct: 839 MSFLHCKKLKKLPLDSNSAKERKIVISGERNWREQLQWEDEATRNAF 885

Source: Citrus trifoliata

Species: Citrus trifoliata

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|24461861|gb|AAN62348.1|AF506028_15 NBS-LRR type disease resistance protein [Citrus trifoliata]

 Score =  169 bits (429), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 100/222 (45%), Positives = 135/222 (60%), Gaps = 12/222 (5%)

Query: 8   KHLKVLSWSFGSSLAVQKFLKYPKLVSITQSVGVYQCR-SPPFNVFHLAYMENLQELELE 66
           KHL+VLS + GSS A+Q FL    L S T+++ +   + S   +V  LA ++ L+ L + 
Sbjct: 673 KHLEVLSLTLGSSRALQSFLTSHMLRSCTRAMLLQDFQGSTSVDVSGLADLKRLKRLRIS 732

Query: 67  YC-NLEEMKIDSTDEVKKLFQSGFRSLNTVHVFYCQKAKDLTWLVFVQNLKKLRIEFCDD 125
            C  L E+KID   EV++    GF SL +  V YC K KDLT LV + NLK + +  C+ 
Sbjct: 733 DCYELVELKIDYAGEVQRY---GFHSLQSFEVNYCSKLKDLTLLVLIPNLKSIEVTDCEA 789

Query: 126 VEEIIGVDKLRDISEIIGSEHNFFAQLEYLTISWGINLKGVYPNPLPFPKLKKIKVRGCR 185
           +EEII V +            N FA+L+YL I    NLK +Y  PLPFP L+++ V  C 
Sbjct: 790 MEEIISVGEF-------AGNPNAFAKLQYLGIGNLPNLKSIYWKPLPFPCLEELTVSDCY 842

Query: 186 HLKKLPLNSSSAKERRVVIEGSKKWWEELQWEDQATQNAFSS 227
            LKKLPL+S+SAKE ++VI G+  WW  LQWED+ATQNAF S
Sbjct: 843 ELKKLPLDSNSAKEHKIVIRGAANWWRNLQWEDEATQNAFLS 884

Source: Citrus trifoliata

Species: Citrus trifoliata

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|24461864|gb|AAN62351.1|AF506028_18 NBS-LRR type disease resistance protein [Citrus trifoliata]

 Score =  161 bits (408), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 97/227 (42%), Positives = 136/227 (59%), Gaps = 10/227 (4%)

Query: 1   MKELLGLKHLKVLSWSFGSSLAVQKFLKYPKLVSITQSVGVYQC-RSPPFNVFHLAYMEN 59
           ++ L GLKHL+VLS +  +S  +Q  L   KL S TQ++ ++   RS P +V  LA +E+
Sbjct: 673 VEALRGLKHLEVLSLTLNNSQDLQCVLNSEKLRSCTQALYLHSFKRSEPLDVSALAGLEH 732

Query: 60  LQELELEYCN-LEEMKIDSTDEVKKLFQSGFRSLNTVHVFYCQKAKDLTWLVFVQNLKKL 118
           L  L +  C  LEE+K+     V       F+SL  + ++ C + K+LT+L+F  NLK +
Sbjct: 733 LNRLWIHECEELEELKMARQPFV-------FQSLEKIQIYGCHRLKNLTFLLFAPNLKSI 785

Query: 119 RIEFCDDVEEIIGVDKLRDISEIIGSEHNFFAQLEYLTISWGINLKGVYPNPLPFPKLKK 178
            +  C  +EEII   K  D  E++     F AQL  L +     LK +Y  PLPFP L+ 
Sbjct: 786 EVSSCFAMEEIISEVKFADFPEVMPIIKPF-AQLYSLRLGGLTVLKSIYKRPLPFPCLRD 844

Query: 179 IKVRGCRHLKKLPLNSSSAKERRVVIEGSKKWWEELQWEDQATQNAF 225
           + V  C  L+KLPL+S+SAKER++VI G  KWWE+LQWEDQ TQNAF
Sbjct: 845 LTVNSCDELRKLPLDSNSAKERKIVIRGYTKWWEQLQWEDQDTQNAF 891

Source: Citrus trifoliata

Species: Citrus trifoliata

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|24461863|gb|AAN62350.1|AF506028_17 NBS-LRR type disease resistance protein [Citrus trifoliata]

 Score =  144 bits (362), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 97/231 (41%), Positives = 137/231 (59%), Gaps = 8/231 (3%)

Query: 1   MKELLGLKHLKVLSWSFGSSLAVQKFLKYPKLVSITQSVGVYQCRSPP--FNVFHLAYME 58
           ++ELLGLK+L+VL  +  SS A+Q F    KL S  +S+ + + R      +    A + 
Sbjct: 657 IQELLGLKYLEVLELTLRSSHALQLFFSSNKLKSCIRSLLLDEVRGTKSIIDATAFADLN 716

Query: 59  NLQELELE-YCNLEEMKIDSTDEVKKLFQS-GFRSLNTVHVFYCQKAKDLTWLVFVQNLK 116
           +L EL ++    +EE+KID T+ V+K  +   F SL+ V +  C K KDLT+LVF  NLK
Sbjct: 717 HLNELRIDSVAEVEELKIDYTEIVRKRREPFVFGSLHRVTLGQCLKLKDLTFLVFAPNLK 776

Query: 117 KLRIEFCDDVEEIIGVDKLRDISEIIGSEHNFFAQLEYLTISWGINLKGVYPNPLPFPKL 176
            L++  C  +EEII V K  ++ E++G   + F  L+ L +     LK +Y  PLPF  L
Sbjct: 777 SLQLLNCRAMEEIISVGKFAEVPEVMG-HISPFENLQRLHLFDLPRLKSIYWKPLPFTHL 835

Query: 177 KKIKVRGCRHLKKLPLNSSSAKERRVVIEGSKKWWEELQWEDQATQNAFSS 227
           K+++V GC  LKKLPL+S+SAK    VI G  + W  LQWED ATQ AF S
Sbjct: 836 KEMRVHGCNQLKKLPLDSNSAK---FVIRGEAEGWNRLQWEDDATQIAFRS 883

Source: Citrus trifoliata

Species: Citrus trifoliata

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224122896|ref|XP_002318943.1| cc-nbs-lrr resistance protein [Populus trichocarpa] gi|222857319|gb|EEE94866.1| cc-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  142 bits (359), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 85/230 (36%), Positives = 134/230 (58%), Gaps = 19/230 (8%)

Query: 2   KELLGLKHLKVLSWSFGSSLAVQKFLKYPKLVSITQSVGV---YQCRSPPFNVFHLAYME 58
           ++L  L+HL +L+ +  S  ++Q F  + K ++ TQ++ +   +  RS   ++  L  M 
Sbjct: 595 RDLQCLEHLNLLTITIRSQYSLQTFASFNKFLTATQALSLQKFHHARS--LDISLLEGMN 652

Query: 59  NLQELELEYC-NLEEMKIDSTDEVKKLFQSGFRSLNTVHVFYCQKAKDLTWLVFVQNLKK 117
           +L +LEL  C NL+++ I+++   +   ++ F SL  V +  C K +DL WL    N+K 
Sbjct: 653 SLDDLELIDCSNLKDLSINNSSITR---ETSFNSLRRVSIVNCTKLEDLAWLTLAPNIKF 709

Query: 118 LRIEFCDDVEEIIGVDKLRDISEIIGSEHNF--FAQLEYLTISWGINLKGVYPNPLPFPK 175
           L I  C  +EEII  +K          + N   F +LE+L +     LK +YP+ LPFP 
Sbjct: 710 LTISRCSKMEEIIRQEK--------SGQRNLKVFEELEFLRLVSLPKLKVIYPDALPFPS 761

Query: 176 LKKIKVRGCRHLKKLPLNSSSAKERRVVIEGSKKWWEELQWEDQATQNAF 225
           LK+I V  C +L+KLPLNS+SAKE R+VI+G + WW  L+WED+A Q+ F
Sbjct: 762 LKEIFVDDCPNLRKLPLNSNSAKEHRIVIQGWEDWWRRLEWEDEAAQHTF 811

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225443158|ref|XP_002263674.1| PREDICTED: probable disease resistance protein At5g63020-like [Vitis vinifera]

 Score =  132 bits (331), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 88/242 (36%), Positives = 131/242 (54%), Gaps = 21/242 (8%)

Query: 1   MKELLGLKHLKVLSWSFGSSLAVQKFLKYPKLVSITQSVGVYQCRSPPFNVFHLAYMENL 60
           + EL  L +L  L+ +  S+ A+Q+ L   K+   TQ + +        N   ++++EN+
Sbjct: 659 VNELECLNNLCDLNITIRSASALQRCLCSEKIEGCTQDLFLQFFNG--LNSLDISFLENM 716

Query: 61  QELEL----EYCNLEEMKIDSTDEVKKLFQS-------------GFRSLNTVHVFYCQKA 103
           + L+     +   L ++ I+ TDE +++  S              F SL +V +  C   
Sbjct: 717 KRLDTLHISDCATLADLNINGTDEGQEILTSDNYLDNSKITSLKNFHSLRSVRIERCLML 776

Query: 104 KDLTWLVFVQNLKKLRIEFCDDVEEIIGVDKLRDISEIIGSEHNFFAQLEYLTISWGINL 163
           KDLTWLVF  NL  L I FC ++E++I   K  + +E  G   + FA+LE L +     L
Sbjct: 777 KDLTWLVFAPNLVNLWIVFCRNIEQVIDSGKWVEAAE--GRNMSPFAKLEDLILIDLPKL 834

Query: 164 KGVYPNPLPFPKLKKIKVRGCRHLKKLPLNSSSAKERRVVIEGSKKWWEELQWEDQATQN 223
           K +Y N L FP LK+++V  C  LKKLPLNS+SAK R +VI G K W  EL+WED+A  N
Sbjct: 835 KSIYRNTLAFPCLKEVRVHCCPKLKKLPLNSNSAKGRGMVIYGEKDWRNELEWEDEAAHN 894

Query: 224 AF 225
           AF
Sbjct: 895 AF 896

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255553059|ref|XP_002517572.1| Disease resistance protein RFL1, putative [Ricinus communis] gi|223543204|gb|EEF44736.1| Disease resistance protein RFL1, putative [Ricinus communis]

 Score =  132 bits (331), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 92/235 (39%), Positives = 135/235 (57%), Gaps = 12/235 (5%)

Query: 1   MKELLGLKHLKVLSWSFGSSLAVQKFLKYPKLVSITQSVGVYQCRSPP--FNVFHLAYME 58
           ++EL  L++L  LS +   S  +Q F    + ++ T+++ +  C   P   ++  LA M+
Sbjct: 567 IEELQSLENLNELSITINFSSILQSFFNMDRFLNCTRAL-LLMCFDAPRSVDISFLANMK 625

Query: 59  NLQELE-LEYCNLEEMKI----DSTDEVKKLFQSG--FRSLNTVHVFYCQKAKDLTWLVF 111
           NL  LE L   +LE + +      T +V  +  S   F SL  V V+ C+K ++LTWL  
Sbjct: 626 NLGILEILANSSLEVLDVGILTQGTSQVPSVISSKKCFDSLQRVVVYNCRKLRELTWLSL 685

Query: 112 VQNLKKLRIEFCDDVEEIIGVDKLRDISEIIGSEH-NFFAQLEYLTISWGINLKGVYPNP 170
             NL  LR+++ +++EEI  V  L + + I GS +    A+LE+L +     L+ V+PN 
Sbjct: 686 APNLAILRVKYNENMEEIFSVRILIEFA-IRGSINLKPLAKLEFLELGKLPRLESVHPNA 744

Query: 171 LPFPKLKKIKVRGCRHLKKLPLNSSSAKERRVVIEGSKKWWEELQWEDQATQNAF 225
           L FP LKKIKV  C  LKKLPLNSSS K   VVIE   KWWE+++WED AT+ AF
Sbjct: 745 LSFPFLKKIKVFKCPKLKKLPLNSSSVKGSEVVIEAEAKWWEDVEWEDDATKAAF 799

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296088271|emb|CBI36497.3| unnamed protein product [Vitis vinifera]

 Score =  130 bits (326), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 89/237 (37%), Positives = 132/237 (55%), Gaps = 20/237 (8%)

Query: 1   MKELLGLKHLKVLSWSFGSSLAVQKFLKYPKLVSITQSVGVYQCRSPPFNVFHLA-YMEN 59
           ++EL  LK+L  LS +  S+    +FL   KL++ T ++ +   +           Y+++
Sbjct: 330 VEELESLKYLTDLSVTIASASVFMRFLSSRKLLTCTHAICLKMFKGSSSLNLSSLEYLKD 389

Query: 60  LQELELEYCN-LEEMKIDSTDEVKKLFQSGFRSLNT-VHVFY---------CQKAKDLTW 108
           L  L++E  + L E+K D T + K+    G+ SLN  V  F+         CQ  K+LTW
Sbjct: 390 LGGLKMEDLDSLREIKFDWTGKGKETV--GYSSLNPKVKCFHGLRRVVINRCQMLKNLTW 447

Query: 109 LVFVQNLKKLRIEFCDDVEEIIGVDKLRDISEIIGSEHNFFAQLEYLTISWGINLKGVYP 168
           L+F  NL  L I  CD++EE+IG     D     G   + F +L+ L ++    LK VY 
Sbjct: 448 LIFAPNLLYLTIGQCDEIEEVIG-KGAED-----GGNLSPFTKLKRLELNGLPQLKNVYR 501

Query: 169 NPLPFPKLKKIKVRGCRHLKKLPLNSSSAKERRVVIEGSKKWWEELQWEDQATQNAF 225
           NPLPF  L +I+V GC  LK+LPLNS+SA + RVV+ G ++WW EL+WED+AT   F
Sbjct: 502 NPLPFLYLDRIEVVGCPKLKRLPLNSNSANQGRVVMVGKQEWWNELEWEDEATLTTF 558

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147782477|emb|CAN75117.1| hypothetical protein VITISV_002420 [Vitis vinifera]

 Score =  129 bits (324), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 85/227 (37%), Positives = 126/227 (55%), Gaps = 3/227 (1%)

Query: 1    MKELLGLKHLKVLSWSFGSSLAVQKFLKYPKLVSITQSVGVYQCRSPPFNVFHLAYMENL 60
            ++E+  L++L  +S S  +  AVQK+L    L    + + +  C         L+ ++ L
Sbjct: 1146 LQEIECLEYLSWISISLFTVPAVQKYLTSLMLQKRIRELDMTACPGLKVVELPLSTLQTL 1205

Query: 61   QELELEYCN-LEEMKIDSTDEVKKLFQSGFRSLNTVHVFYCQKAKDLTWLVFVQNLKKLR 119
              LELE+CN LE +KI+       +  S F +L  V++  C +  DLTWL++  +L+ L 
Sbjct: 1206 TVLELEHCNDLERVKINRGLSRGHISNSNFHNLVRVNISGC-RFLDLTWLIYAPSLESLM 1264

Query: 120  IEFCDDVEEIIGVDKLRDISEIIGSEHNFFAQLEYLTISWGINLKGVYPNPLPFPKLKKI 179
            +  C ++EEIIG D+  D SEI     + F++L  L +    NLK +Y   LPFP LKKI
Sbjct: 1265 VFSCREMEEIIGSDEYGD-SEIDQQNLSIFSRLVTLWLDDLPNLKSIYKRALPFPSLKKI 1323

Query: 180  KVRGCRHLKKLPLNSSSAKERRVVIEGSKKWWEELQWEDQATQNAFS 226
             V  C +L+KLPLNS+SA      IEG   WWEEL+WED   +  F+
Sbjct: 1324 HVIRCPNLRKLPLNSNSATNTLKEIEGHLTWWEELEWEDDNLKRIFT 1370

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	238
TAIR|locus:2201996	889	RPS5 "AT1G12220" [Arabidopsis	0.928	0.248	0.363	1.2e-27
TAIR|locus:2166320	888	AT5G63020 [Arabidopsis thalian	0.920	0.246	0.336	2.6e-27
TAIR|locus:2034770	894	SUMM2 "AT1G12280" [Arabidopsis	0.924	0.246	0.346	2.2e-25
TAIR|locus:2201986	885	RFL1 "AT1G12210" [Arabidopsis	0.928	0.249	0.346	1.2e-24
TAIR|locus:2034765	884	AT1G12290 [Arabidopsis thalian	0.903	0.243	0.347	3.3e-24
TAIR|locus:2031366	898	AT1G63350 "AT1G63350" [Arabido	0.899	0.238	0.323	6.6e-23
TAIR|locus:2153474	874	AT5G05400 [Arabidopsis thalian	0.936	0.255	0.306	9.4e-22
TAIR|locus:2171589	948	AT5G47260 [Arabidopsis thalian	0.941	0.236	0.283	4.7e-21
TAIR|locus:2031356	884	AT1G63360 [Arabidopsis thalian	0.878	0.236	0.299	6.9e-21
TAIR|locus:2008440	899	AT1G61180 [Arabidopsis thalian	0.907	0.240	0.317	2.4e-20

TAIR|locus:2201996 RPS5 "AT1G12220" [Arabidopsis thaliana (taxid:3702)]

 Score = 320 (117.7 bits), Expect = 1.2e-27, P = 1.2e-27
 Identities = 84/231 (36%), Positives = 120/231 (51%)

Query:     1 MKELLGLKHLKVLSWSFGSSLAVQKFLKYPKLVSITQSVGVYQCRSPPFNVFHLAYMENL 60
             +KEL  L+HL+V++    SSL  +  L   +LV   + V     +     V  L  M NL
Sbjct:   652 VKELQLLEHLEVITLDISSSLVAEPLLCSQRLVECIKEVDFKYLKEESVRVLTLPTMGNL 711

Query:    61 QELELEYCNLEEMKIDSTDEVKKLFQSG----FRSLNTVHVFYCQKAKDLTWLVFVQNLK 116
             ++L ++ C + E+KI+ T       +S     F +L+ V +  C   KDLTWL+F  NL 
Sbjct:   712 RKLGIKRCGMREIKIERTTSSSSRNKSPTTPCFSNLSRVFIAKCHGLKDLTWLLFAPNLT 771

Query:   117 KLRIEFCDDVEEIIGVDKLRDISEIIGSEHNFFAQLEYLTISWGINLKGVYPNPLPFPKL 176
              L + F  +VE+II  +K  + S  I      F +LE L +     LK +Y   L FP L
Sbjct:   772 FLEVGFSKEVEDIISEEKAEEHSATIVP----FRKLETLHLFELRGLKRIYAKALHFPCL 827

Query:   177 KKIKVRGCRHLKKLPLNSSS--AKERRVVIEGSKKWWEELQWEDQATQNAF 225
             K I V  C  L+KLPL+S S  A E  V+  G ++W E ++WEDQATQ  F
Sbjct:   828 KVIHVEKCEKLRKLPLDSKSGIAGEELVIYYGEREWIERVEWEDQATQLRF 878

GO:0009626 "plant-type hypersensitive response" evidence=IMP

GO:0006952 "defense response" evidence=IMP;TAS

GO:0009816 "defense response to bacterium, incompatible interaction" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0008219 "cell death" evidence=IMP

GO:0038023 "signaling receptor activity" evidence=IMP

GO:0000166 "nucleotide binding" evidence=IMP

GO:0005622 "intracellular" evidence=ISS

TAIR|locus:2166320 AT5G63020 [Arabidopsis thaliana (taxid:3702)]

 Score = 317 (116.6 bits), Expect = 2.6e-27, P = 2.6e-27
 Identities = 77/229 (33%), Positives = 127/229 (55%)

Query:     1 MKELLGLKHLKVLSWSFGSSLAVQKFLKYPKLVSITQSVGVYQCRSPPFNVFHLAYMENL 60
             + EL  L++L+ L+ + G +  +++FL   +L S T+++ +         +  +A M++L
Sbjct:   646 LNELQLLENLQTLTITLGLASILEQFLSNQRLASCTRALRIENLNPQSSVISFVATMDSL 705

Query:    61 QELELEYCNLEEMKIDSTDEVKKLF----QSGFRSLNTVHVFYCQKAKDLTWLVFVQNLK 116
             QEL     ++ E+K+   + V  L      + F +L+ V + +C + +DLTWL+F  NL 
Sbjct:   706 QELHFADSDIWEIKVKRNETVLPLHIPTTTTFFPNLSQVSLEFCTRLRDLTWLIFAPNLT 765

Query:   117 KLRIEFCDDVEEIIGVDKLRDISEIIGSEHNFFAQLEYLTISWGINLKGVYPNPLPFPKL 176
              LR+    D++E+I  +K      +I      F +L+ L +     LK ++  PLPFP L
Sbjct:   766 VLRVISASDLKEVINKEKAEQ-QNLIP-----FQELKELRLENVQMLKHIHRGPLPFPCL 819

Query:   177 KKIKVRGCRHLKKLPLNSSSAKERRVVIEGSKKWWEELQWEDQATQNAF 225
             +KI V GC  L+KLPLN +S     +VIE  KKW E L+WED+AT+  F
Sbjct:   820 QKILVNGCSELRKLPLNFTSVPRGDLVIEAHKKWIEILEWEDEATKARF 868

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2034770 SUMM2 "AT1G12280" [Arabidopsis thaliana (taxid:3702)]

 Score = 299 (110.3 bits), Expect = 2.2e-25, P = 2.2e-25
 Identities = 80/231 (34%), Positives = 125/231 (54%)

Query:     1 MKELLGLKHLKVLSWSFGSSLAVQKFLKYPKLVSITQSVGVYQCRSPPFNVFHLAYMENL 60
             ++EL  L+HL+VL+ S  SSL V+K L  P+LV   Q + +   +     V  L  M+NL
Sbjct:   652 VEELQLLEHLEVLNISIKSSLVVEKLLNAPRLVKCLQILVLRGVQEESSGVLTLPDMDNL 711

Query:    61 QELELEYCNLEEMKID----STDEVKKLFQSGFRSLNTVHVFYCQKAKDLTWLVFVQNLK 116
              ++ +  C + E+KI+    S    +        +L+TVH+  C   KDLTWL+F  NL 
Sbjct:   712 NKVIIRKCGMCEIKIERKTLSLSSNRSPKTQFLHNLSTVHISSCDGLKDLTWLLFAPNLT 771

Query:   117 KLRIEFCDDVEEIIGVDKLRDISEIIGSEHNFFAQLEYLTISWGINLKGVYPNPLPFPKL 176
              L +   + VE II  +K   +S II      F +LE L +     L+ +Y  PL FP L
Sbjct:   772 SLEVLDSELVEGIINQEKAMTMSGIIP-----FQKLESLRLHNLAMLRSIYWQPLSFPCL 826

Query:   177 KKIKVRGCRHLKKLPLNSSSA-KERRVVIE-GSKKWWEELQWEDQATQNAF 225
             K I +  C  L+KLPL+S  A ++  +VI+   ++W E ++W+++AT+  F
Sbjct:   827 KTIHITKCPELRKLPLDSEIAIRDEELVIKYQEEEWLERVEWDNEATRLRF 877

GO:0006952 "defense response" evidence=IGI;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2201986 RFL1 "AT1G12210" [Arabidopsis thaliana (taxid:3702)]

 Score = 292 (107.8 bits), Expect = 1.2e-24, P = 1.2e-24
 Identities = 80/231 (34%), Positives = 118/231 (51%)

Query:     1 MKELLGLKHLKVLSWSFGSSLAVQKFLKYPKLVSITQSVGVYQCRSPP---FNVFHLAYM 57
             MKEL  L+HL++++    S L  + F  YP++    Q + +      P     V  L  +
Sbjct:   652 MKELQLLEHLELITTDISSGLVGELFC-YPRVGRCIQHIYIRDHWERPEESVGVLVLPAI 710

Query:    58 ENLQELELEYCNLEEMKIDSTDEVKKLFQSGFRSLNTVHVFYCQKAKDLTWLVFVQNLKK 117
              NL  + +  C + E+ I+ T   K L    F +L+ V +  C   KDLTWL+F  NL  
Sbjct:   711 HNLCYISIWNCWMWEIMIEKTPWKKNLTNPNFSNLSNVRIEGCDGLKDLTWLLFAPNLIN 770

Query:   118 LRIEFCDDVEEIIGVDKLRDISEIIGSEHNFFAQLEYLTISWGINLKGVYPNPLPFPKLK 177
             LR+  C  +E+II  +K   + E    E   F +LE L +     LK +Y N LPF +L+
Sbjct:   771 LRVWGCKHLEDIISKEKAASVLE---KEILPFQKLECLNLYQLSELKSIYWNALPFQRLR 827

Query:   178 KIKV-RGCRHLKKLPLNSSSA-KERRVVIE-GSKKWWEELQWEDQATQNAF 225
              + +   C  L+KLPL+S S  K    VI+   KKW E ++WED+ATQ  F
Sbjct:   828 CLDILNNCPKLRKLPLDSKSVVKVEEFVIKYKEKKWIERVEWEDEATQYRF 878

GO:0005575 "cellular_component" evidence=ND

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

GO:0009617 "response to bacterium" evidence=ISS

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

TAIR|locus:2034765 AT1G12290 [Arabidopsis thaliana (taxid:3702)]

 Score = 288 (106.4 bits), Expect = 3.3e-24, P = 3.3e-24
 Identities = 80/230 (34%), Positives = 124/230 (53%)

Query:     1 MKELLGLKHLKVLSWSFGSSLAVQKFLKYPKLVSITQSVGVYQCRSPPFNVFHLAYMENL 60
             ++EL  L++L+VL+    SS A+++ L   +LV   Q V V         +  L  + +L
Sbjct:   654 LEELERLENLEVLTIEIISSSALEQLLCSHRLVRCLQKVSVKYLDEESVRILTLPSIGDL 713

Query:    61 QELELEYCNLEEMKIDSTDEVKKLFQSGFRSLNTVHVFYCQKAKDLTWLVFVQNLKKLRI 120
             +E+ +  C + ++ I+       L    F +L+ V +  C   KDLTWL+F  NL  L +
Sbjct:   714 REVFIGGCGMRDIIIERNTS---LTSPCFPNLSKVLITGCNGLKDLTWLLFAPNLTHLNV 770

Query:   121 EFCDDVEEIIGVDKLRDISEIIGSEHNFFAQLEYLTISWGI-NLKGVYPNPLPFPKLKKI 179
                  +EEII  +K    ++I+      F +LEYL + W +  LK +Y NPLPFP L +I
Sbjct:   771 WNSRQIEEIISQEKA-STADIVP-----FRKLEYLHL-WDLPELKSIYWNPLPFPCLNQI 823

Query:   180 KVRG-CRHLKKLPLNSSS---AKERRVVIEGSKKWWEELQWEDQATQNAF 225
              V+  CR L KLPL+S S   A E  V+  G ++W E ++WED+AT+  F
Sbjct:   824 NVQNKCRKLTKLPLDSQSCIVAGEELVIQYGDEEWKERVEWEDKATRLRF 873

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

TAIR|locus:2031366 AT1G63350 "AT1G63350" [Arabidopsis thaliana (taxid:3702)]

 Score = 276 (102.2 bits), Expect = 6.6e-23, P = 6.6e-23
 Identities = 75/232 (32%), Positives = 124/232 (53%)

Query:     1 MKELLGLKHLKVLSWSFGS-SLAVQKFLKYPKLVSITQSVGVYQCRSPPFNVFHLAY--- 56
             +KEL  L+HL+VL+ +    +L   +FL   +L+S  + + +    +   N   ++    
Sbjct:   650 VKELEALEHLEVLTTTIDDCTLGTDQFLSSHRLMSCIRFLKISNNSNRNRNSSRISLPVT 709

Query:    57 MENLQELELEYCNLEEMKIDSTDEVKKLFQSGFRSLNTVHVFYCQKAKDLTWLVFVQNLK 116
             M+ LQE  +E+C+  E+K+             F SL  V++  C++ ++LT+L+F  NLK
Sbjct:   710 MDRLQEFTIEHCHTSEIKMGRI--------CSFSSLIEVNLSNCRRLRELTFLMFAPNLK 761

Query:   117 KLRIEFCDDVEEIIGVDKLRDISEIIGSEHNFFAQLEYLTISWGINLKGVYPNPLPFPKL 176
             +L +   + +E+II  +K  D  E  G     F +L  L +     LK +Y +PLPFP L
Sbjct:   762 RLHVVSSNQLEDIINKEKAHD-GEKSGIVP--FPKLNELHLYNLRELKNIYWSPLPFPCL 818

Query:   177 KKIKVRGCRHLKKLPLNSSSAKERR---VVIEGSKKWWEELQWEDQATQNAF 225
             +KI V GC +LKKLPL+S S K      ++     +W   ++WED+AT+  F
Sbjct:   819 EKINVMGCPNLKKLPLDSKSGKHGGNGLIITHREMEWITRVEWEDEATKTRF 870

GO:0005575 "cellular_component" evidence=ND

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2153474 AT5G05400 [Arabidopsis thaliana (taxid:3702)]

 Score = 265 (98.3 bits), Expect = 9.4e-22, P = 9.4e-22
 Identities = 72/235 (30%), Positives = 119/235 (50%)

Query:     1 MKELLGLKHLKVLSWSFGSSLAVQKFLKYPKLVSITQSVGV-----YQCRSPPFNVFHLA 55
             ++++  +KHL +L+ +  +S  ++ FL   +  S T+ + +     YQ    P      +
Sbjct:   639 VRQIQAMKHLYLLTITLRNSSGLEIFLGDTRFSSYTEGLTLDEQSYYQSLKVPLATISSS 698

Query:    56 YMENLQELELEYCNLEEMKIDSTDEVKKLFQS--GFRSLNTVHVFYCQKAKDLTWLVFVQ 113
                 +Q+  +    +E    + ++ V    +    F +L  V +  C   KDLTWLVF  
Sbjct:   699 RFLEIQDSHIPKIEIEGSSSNESEIVGPRVRRDISFINLRKVRLDNCTGLKDLTWLVFAP 758

Query:   114 NLKKLRIEFCDDVEEIIG---VDKLRDISEIIGSEHNFFAQLEYLTISWGINLKGVYPNP 170
             +L  L +    D+E II      +L+   E+ G     F +LE+LT+     LK +Y +P
Sbjct:   759 HLATLYVVCLPDIEHIISRSEESRLQKTCELAGVIP--FRELEFLTLRNLGQLKSIYRDP 816

Query:   171 LPFPKLKKIKVRGCRHLKKLPLNSSSAKERRVVIEGSKKWWEELQWEDQATQNAF 225
             L F KLK+I ++ C  L KLPL+S SA ++ VVI   ++W + LQWED AT+  F
Sbjct:   817 LLFGKLKEINIKSCPKLTKLPLDSRSAWKQNVVINAEEEWLQGLQWEDVATKERF 871

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

GO:0006826 "iron ion transport" evidence=RCA

GO:0010106 "cellular response to iron ion starvation" evidence=RCA

GO:0010167 "response to nitrate" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

TAIR|locus:2171589 AT5G47260 [Arabidopsis thaliana (taxid:3702)]

 Score = 259 (96.2 bits), Expect = 4.7e-21, P = 4.7e-21
 Identities = 64/226 (28%), Positives = 118/226 (52%)

Query:     1 MKELLGLKHLKVLSWSFGSSLAVQKFLKYPKLVSITQSVGVYQCRSPPFNVFHLAYMENL 60
             M+++  LK LK LS +   S  +Q+ L   +L S  + + + +       +  L  + +L
Sbjct:   632 MEDIQLLKSLKELSLTVRGSSVLQRLLSIQRLASSIRRLHLTETTIVDGGILSLNAIFSL 691

Query:    61 QELELEYCNLEEMKIDSTDEVKKLFQSGFRSLNTVHVFYCQKAKDLTWLVFVQNLKKLRI 120
              EL++  CN+ E+ ID    +++     F+++ T+ +  C+  +DLTWL+    L +L +
Sbjct:   692 CELDILGCNILEITIDWRCTIQREIIPQFQNIRTMTIHRCEYLRDLTWLLLAPCLGELSV 751

Query:   121 EFCDDVEEIIGVDKLRDISEIIGSEHNFFAQLEYLTISWGINLKGVYPNPLPFPKLKKIK 180
               C  +EE+I  DK   ++++  +    F  L  L +     L+ +Y  PLPFP L+ + 
Sbjct:   752 SECPQMEEVISKDKA--MAKLGNTSEQPFQNLTKLVLDGLPKLESIYWTPLPFPVLEYLV 809

Query:   181 VRGCRHLKKLPLNSSSAKERRVVIEGSKKWWEELQWEDQATQNAFS 226
             +R C  L++LP NS S    +V     ++  + ++WED+AT+  FS
Sbjct:   810 IRRCPELRRLPFNSESTIGNQVETIIEEQVIKIVEWEDEATKQRFS 855

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0045036 "protein targeting to chloroplast" evidence=RCA

TAIR|locus:2031356 AT1G63360 [Arabidopsis thaliana (taxid:3702)]

 Score = 257 (95.5 bits), Expect = 6.9e-21, P = 6.9e-21
 Identities = 70/234 (29%), Positives = 126/234 (53%)

Query:     1 MKELLGLKHLKVLSWSFGSSLAVQKFLKYPKLVSITQSVGVYQCRSPPFNVFHLAYM--- 57
             +KEL  L+HL++L+ +       ++FL   +L+S ++ + +Y       N  HL  +   
Sbjct:   657 VKELETLEHLEILTTTIDPR--AKQFLSSHRLLSHSRLLEIYGSSVSSLNR-HLESLSVS 713

Query:    58 -ENLQELELEYCNLEEMKIDSTDEVKKLFQSGFRSLNTVHVFYCQKAKDLTWLVFVQNLK 116
              + L+E +++ C++ E+K+             F SL  V++F C+  ++LT+L+F   ++
Sbjct:   714 TDKLREFQIKSCSISEIKMGGI--------CNFLSLVDVNIFNCEGLRELTFLIFAPKIR 765

Query:   117 KLRIEFCDDVEEIIGVDKLRDISEIIGSEHNF--FAQLEYLTISWGINLKGVYPNPLPFP 174
              L +    D+E+II  +K  +     G E     F +L +LT+     LK +Y  PLPF 
Sbjct:   766 SLSVWHAKDLEDIINEEKACE-----GEESGILPFPELNFLTLHDLPKLKKIYWRPLPFL 820

Query:   175 KLKKIKVRGCRHLKKLPLNSSSAK--ERRVVIEGS-KKWWEELQWEDQATQNAF 225
              L++I +R C +L+KLPL+S+S K  E   +I     +W+E ++W D+AT+  F
Sbjct:   821 CLEEINIRECPNLRKLPLDSTSGKQGENGCIIRNKDSRWFEGVKWADEATKKRF 874

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2008440 AT1G61180 [Arabidopsis thaliana (taxid:3702)]

 Score = 252 (93.8 bits), Expect = 2.4e-20, P = 2.4e-20
 Identities = 74/233 (31%), Positives = 118/233 (50%)

Query:     1 MKELLGLKHLKVLSWSFGSSLAVQKFLKYPKLVSITQSVGVYQCRSPPFNVFHLAYMENL 60
             +KEL  L++L+ L+ +  + L +    +  KL+S     G  Q    PF++  LA MENL
Sbjct:   646 LKELQQLQNLQELAITVSAEL-ISLDQRLAKLISNLCIEGFLQ---KPFDLSFLASMENL 701

Query:    61 QELELEYCNLEEMKIDSTDEVKKLFQSG-----FRSLNTVHVFYCQKAKDLTWLVFVQNL 115
               L +E     E+K   ++      +       F +L+ + +  C   KDLTW++F  NL
Sbjct:   702 SSLRVENSYFSEIKCRESETESSYLRINPKIPCFTNLSRLEIMKCHSMKDLTWILFAPNL 761

Query:   116 KKLRIEFCDDVEEIIGVDKLRDISEIIGSEHNFFAQLEYLTISWGINLKGVYPNPLPFPK 175
               L IE   +V EII  +K  +++ I       F +LE+L +     L+ +Y +PLPFP 
Sbjct:   762 VVLLIEDSREVGEIINKEKATNLTSITP-----FLKLEWLILYNLPKLESIYWSPLPFPV 816

Query:   176 LKKIKVRGCRHLKKLPLNSSSA---KERRVVIEGSKKWWEELQWEDQATQNAF 225
             L  + V  C  L+KLPLN++S    +E  + +    +   EL+WED  T+N F
Sbjct:   817 LLTMDVSNCPKLRKLPLNATSVSKVEEFEIHMYPPPEQENELEWEDDDTKNRF 869

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	238
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	99.52
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.3
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.3
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	98.46
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	98.38
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.33
PRK15386	426	type III secretion protein GogB; Provisional	97.83
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	97.65
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	97.55
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.45
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	97.43
PRK15386	426	type III secretion protein GogB; Provisional	97.43
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	97.43
KOG4341	483	consensus F-box protein containing LRR [General fu	97.35
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	97.21
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	97.16
KOG4341	483	consensus F-box protein containing LRR [General fu	97.03
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	97.0
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	96.95
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	96.94
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	96.91
KOG0617	264	consensus Ras suppressor protein (contains leucine	96.88
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	96.84
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	96.8
KOG1947	482	consensus Leucine rich repeat proteins, some prote	96.68
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	96.64
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	96.61
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	96.55
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	96.37
KOG3864	221	consensus Uncharacterized conserved protein [Funct	96.35
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	96.3
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	96.24
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	96.22
KOG0617	264	consensus Ras suppressor protein (contains leucine	96.15
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	96.04
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	95.92
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	95.91
KOG1947	482	consensus Leucine rich repeat proteins, some prote	95.81
KOG2123	388	consensus Uncharacterized conserved protein [Funct	95.37
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	95.23
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	94.94
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	94.89
KOG3864	221	consensus Uncharacterized conserved protein [Funct	94.83
PLN03150	623	hypothetical protein; Provisional	93.98
PLN03150	623	hypothetical protein; Provisional	93.97
KOG2982	418	consensus Uncharacterized conserved protein [Funct	92.97
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	92.46
KOG0472	565	consensus Leucine-rich repeat protein [Function un	92.25
KOG0472	565	consensus Leucine-rich repeat protein [Function un	91.47
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	90.93
KOG2123	388	consensus Uncharacterized conserved protein [Funct	90.11
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	90.0
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	89.59
smart00367	26	LRR_CC Leucine-rich repeat - CC (cysteine-containi	89.56
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	89.39
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	88.12
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	86.77
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	86.57
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	83.31
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	82.4

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=99.52  E-value=4.2e-15  Score=141.88  Aligned_cols=217  Identities=31%  Similarity=0.451  Sum_probs=172.2

Q ss_pred             CccccccCCCcceeEEeeehHHHHhhhcCchhhcceeEEEEeecCCCCCcccchhhcccCCeEEEeecC-CceEEecccC
Q 026434            1 MKELLGLKHLKVLSWSFGSSLAVQKFLKYPKLVSITQSVGVYQCRSPPFNVFHLAYMENLQELELEYCN-LEEMKIDSTD   79 (238)
Q Consensus         1 l~eL~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~c~~l~~~~~~l~~l~~L~~L~i~~c~-l~~i~~~~~~   79 (238)
                      ++||++|++|+.+++++.+...++.+....++....+.+.+.+|.... ..+++..+.+|+.|.|.+|. .+ +.+++..
T Consensus       661 l~el~~Le~L~~ls~~~~s~~~~e~l~~~~~L~~~~~~l~~~~~~~~~-~~~~~~~l~~L~~L~i~~~~~~e-~~~~~~~  738 (889)
T KOG4658|consen  661 LKELENLEHLENLSITISSVLLLEDLLGMTRLRSLLQSLSIEGCSKRT-LISSLGSLGNLEELSILDCGISE-IVIEWEE  738 (889)
T ss_pred             HHhhhcccchhhheeecchhHhHhhhhhhHHHHHHhHhhhhcccccce-eecccccccCcceEEEEcCCCch-hhccccc
Confidence            468999999999999988877778888888888888888886644322 46678889999999999999 55 3333321


Q ss_pred             ccCccccc-CCCCccEEEEecCCCCCcCcccccCCCccEEEEecccccceeccccccccccccccccccccccccee-ec
Q 026434           80 EVKKLFQS-GFRSLNTVHVFYCQKAKDLTWLVFVQNLKKLRIEFCDDVEEIIGVDKLRDISEIIGSEHNFFAQLEYL-TI  157 (238)
Q Consensus        80 ~~~~~~~~-~l~~L~~L~i~~C~~L~~l~~~~~l~~L~~L~i~~C~~l~~l~~~~~~~~~~~~~~~~~~~~p~L~~L-~L  157 (238)
                      .   .... +|+++..+.+.+|..++++.|....|+|++|.+..|..++++++.........   .....|+++..+ .+
T Consensus       739 ~---~~~~~~f~~l~~~~~~~~~~~r~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~---~~i~~f~~~~~l~~~  812 (889)
T KOG4658|consen  739 S---LIVLLCFPNLSKVSILNCHMLRDLTWLLFAPHLTSLSLVSCRLLEDIIPKLKALLELK---ELILPFNKLEGLRML  812 (889)
T ss_pred             c---cchhhhHHHHHHHHhhccccccccchhhccCcccEEEEecccccccCCCHHHHhhhcc---cEEecccccccceee
Confidence            1   0111 48899999999999999999999999999999999999999987654432110   235678888888 68


Q ss_pred             cccccccccCCCCCCCCCccEEeEcCccCCCCCCCCCCCCCC---cceEEEchhhhhhhcccCchhhhhhc
Q 026434          158 SWGINLKGVYPNPLPFPKLKKIKVRGCRHLKKLPLNSSSAKE---RRVVIEGSKKWWEELQWEDQATQNAF  225 (238)
Q Consensus       158 ~~~~~L~~i~~~~~~~~~L~~L~i~~C~~L~~lp~~~~~~~~---~L~~~~~~~~w~~~~~~~~~~~~~~~  225 (238)
                      .+.+++++++.....++.|+.+.+..||+++.+|........   ...+...+.+|.+.++|+|++++..|
T Consensus       813 ~~l~~l~~i~~~~l~~~~l~~~~ve~~p~l~~~P~~~~~~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  883 (889)
T KOG4658|consen  813 CSLGGLPQLYWLPLSFLKLEELIVEECPKLGKLPLLSTLTIVGCEEKLKEYPDGEWLEGVYWEDELTKLRF  883 (889)
T ss_pred             ecCCCCceeEecccCccchhheehhcCcccccCccccccceeccccceeecCCccceeeEEehhhhhhhhc
Confidence            999999999988888999999999999999999988765442   23444556678899999999999888

>PLN03210 Resistant to P

Probab=99.30  E-value=9e-12  Score=123.54  Aligned_cols=105  Identities=18%  Similarity=0.273  Sum_probs=68.9

Q ss_pred             CCCCccEEEEecCCCCCcCcccccCCCccEEEEecccccceecccccc--------cccccccccccccccccceeeccc
Q 026434           88 GFRSLNTVHVFYCQKAKDLTWLVFVQNLKKLRIEFCDDVEEIIGVDKL--------RDISEIIGSEHNFFAQLEYLTISW  159 (238)
Q Consensus        88 ~l~~L~~L~i~~C~~L~~l~~~~~l~~L~~L~i~~C~~l~~l~~~~~~--------~~~~~~~~~~~~~~p~L~~L~L~~  159 (238)
                      .+++|+.|+|.+|.+++.+|....+++|++|++++|.++..++.....        ....+.+ ..+..+++|+.|++.+
T Consensus       800 ~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~~iP-~si~~l~~L~~L~L~~  878 (1153)
T PLN03210        800 NLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIEEVP-WWIEKFSNLSFLDMNG  878 (1153)
T ss_pred             CCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCccccccccccccCEeECCCCCCccCh-HHHhcCCCCCEEECCC
Confidence            455566666666666666554445666666666666665544221110        0001111 3456788999999999


Q ss_pred             cccccccCCCCCCCCCccEEeEcCccCCCCCCCC
Q 026434          160 GINLKGVYPNPLPFPKLKKIKVRGCRHLKKLPLN  193 (238)
Q Consensus       160 ~~~L~~i~~~~~~~~~L~~L~i~~C~~L~~lp~~  193 (238)
                      |++|++++.....+++|+.+++.+|++|+.++..
T Consensus       879 C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~~l~  912 (1153)
T PLN03210        879 CNNLQRVSLNISKLKHLETVDFSDCGALTEASWN  912 (1153)
T ss_pred             CCCcCccCcccccccCCCeeecCCCcccccccCC
Confidence            9999998877777889999999999999877653

syringae 6; Provisional

>PLN03210 Resistant to P

Probab=99.30  E-value=1.3e-11  Score=122.48  Aligned_cols=89  Identities=16%  Similarity=0.251  Sum_probs=61.5

Q ss_pred             hhhcceeEEEEeecCCCCCcccchhhcccCCeEEEeecC-CceEEecccCccCcccccCCCCccEEEEecCCCCCcCccc
Q 026434           31 KLVSITQSVGVYQCRSPPFNVFHLAYMENLQELELEYCN-LEEMKIDSTDEVKKLFQSGFRSLNTVHVFYCQKAKDLTWL  109 (238)
Q Consensus        31 ~l~~~L~~L~l~~c~~l~~~~~~l~~l~~L~~L~i~~c~-l~~i~~~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~  109 (238)
                      ...++|+.|++.++..+.. ++.++.+++|+.|++.+|. +..++         .+...+++|+.|++++|..++.+|..
T Consensus       631 ~~l~~Lk~L~Ls~~~~l~~-ip~ls~l~~Le~L~L~~c~~L~~lp---------~si~~L~~L~~L~L~~c~~L~~Lp~~  700 (1153)
T PLN03210        631 HSLTGLRNIDLRGSKNLKE-IPDLSMATNLETLKLSDCSSLVELP---------SSIQYLNKLEDLDMSRCENLEILPTG  700 (1153)
T ss_pred             ccCCCCCEEECCCCCCcCc-CCccccCCcccEEEecCCCCccccc---------hhhhccCCCCEEeCCCCCCcCccCCc
Confidence            3346777888777766553 5566777888888888887 76653         22345777888888888777777655


Q ss_pred             ccCCCccEEEEeccccccee
Q 026434          110 VFVQNLKKLRIEFCDDVEEI  129 (238)
Q Consensus       110 ~~l~~L~~L~i~~C~~l~~l  129 (238)
                      ..+++|++|.+.+|..++.+
T Consensus       701 i~l~sL~~L~Lsgc~~L~~~  720 (1153)
T PLN03210        701 INLKSLYRLNLSGCSRLKSF  720 (1153)
T ss_pred             CCCCCCCEEeCCCCCCcccc
Confidence            56777777777777665543

syringae 6; Provisional

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=98.46  E-value=2.8e-07  Score=90.43  Aligned_cols=46  Identities=13%  Similarity=0.134  Sum_probs=25.4

Q ss_pred             ccccccceeeccccccccccCCCCCCCCCccEEeEcCccCCCCCCC
Q 026434          147 NFFAQLEYLTISWGINLKGVYPNPLPFPKLKKIKVRGCRHLKKLPL  192 (238)
Q Consensus       147 ~~~p~L~~L~L~~~~~L~~i~~~~~~~~~L~~L~i~~C~~L~~lp~  192 (238)
                      ..+++|+.|++.++.--..++.....+++|+.|++++|.--..+|.
T Consensus       305 ~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~  350 (968)
T PLN00113        305 IQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPK  350 (968)
T ss_pred             cCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCCh
Confidence            3455566666554432222222334567888888887765545553

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=98.38  E-value=5.4e-07  Score=88.41  Aligned_cols=187  Identities=13%  Similarity=0.048  Sum_probs=88.5

Q ss_pred             cccccCCCcceeEEeeehHHHHhhhcCchhhcceeEEEEeecCCCCCcccchhhcccCCeEEEeecC-CceEEecccC--
Q 026434            3 ELLGLKHLKVLSWSFGSSLAVQKFLKYPKLVSITQSVGVYQCRSPPFNVFHLAYMENLQELELEYCN-LEEMKIDSTD--   79 (238)
Q Consensus         3 eL~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~c~~l~~~~~~l~~l~~L~~L~i~~c~-l~~i~~~~~~--   79 (238)
                      ++.++.+|+.|++.......  .+.....-.++|+.|++.+|.-.......+.++++|+.|++++|. ...++.....  
T Consensus       159 ~~~~l~~L~~L~L~~n~l~~--~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~  236 (968)
T PLN00113        159 DIGSFSSLKVLDLGGNVLVG--KIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLT  236 (968)
T ss_pred             HHhcCCCCCEEECccCcccc--cCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCC
Confidence            45677888888875332110  111111112466677776654211112234555666666665554 2222100000  


Q ss_pred             -----------c--cCcccccCCCCccEEEEecCCCCCcCc-ccccCCCccEEEEecccccceeccc---ccc-------
Q 026434           80 -----------E--VKKLFQSGFRSLNTVHVFYCQKAKDLT-WLVFVQNLKKLRIEFCDDVEEIIGV---DKL-------  135 (238)
Q Consensus        80 -----------~--~~~~~~~~l~~L~~L~i~~C~~L~~l~-~~~~l~~L~~L~i~~C~~l~~l~~~---~~~-------  135 (238)
                                 .  ..+.....+++|+.|+++++.-...++ .+..+++|++|++.+|.-...++..   ...       
T Consensus       237 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~  316 (968)
T PLN00113        237 SLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLF  316 (968)
T ss_pred             CCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECC
Confidence                       0  001123345556666665553111222 3445566666666655321111100   000       


Q ss_pred             -cccccccccccccccccceeeccccccccccCCCCCCCCCccEEeEcCccCCCCCC
Q 026434          136 -RDISEIIGSEHNFFAQLEYLTISWGINLKGVYPNPLPFPKLKKIKVRGCRHLKKLP  191 (238)
Q Consensus       136 -~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~~~~~~~~L~~L~i~~C~~L~~lp  191 (238)
                       ....+.....+..+++|+.|.+.++.--..++.....+++|+.|+++++.--..+|
T Consensus       317 ~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p  373 (968)
T PLN00113        317 SNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIP  373 (968)
T ss_pred             CCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCC
Confidence             00000011345568899999998775433444444567899999998876544455

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.33  E-value=1.6e-08  Score=84.27  Aligned_cols=134  Identities=18%  Similarity=0.138  Sum_probs=93.9

Q ss_pred             cceeEEEEeecCCCCC-ccc-chhhcccCCeEEEeecC-CceEEecccCccCcccccCCCCccEEEEecCCCCCc---Cc
Q 026434           34 SITQSVGVYQCRSPPF-NVF-HLAYMENLQELELEYCN-LEEMKIDSTDEVKKLFQSGFRSLNTVHVFYCQKAKD---LT  107 (238)
Q Consensus        34 ~~L~~L~l~~c~~l~~-~~~-~l~~l~~L~~L~i~~c~-l~~i~~~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~---l~  107 (238)
                      .+|+.|+|..|.++.. ... -+.+++.|..|++++|. ....+--..       ..-=++|+.|+++||.+--.   +.
T Consensus       234 ~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V-------~hise~l~~LNlsG~rrnl~~sh~~  306 (419)
T KOG2120|consen  234 SNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAV-------AHISETLTQLNLSGYRRNLQKSHLS  306 (419)
T ss_pred             ccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHH-------hhhchhhhhhhhhhhHhhhhhhHHH
Confidence            5789999999999876 222 35788999999999998 554421111       11235788999999965322   22


Q ss_pred             c-cccCCCccEEEEecccccceecccccccccccccccccccccccceeecccccccccc-CCCCCCCCCccEEeEcCcc
Q 026434          108 W-LVFVQNLKKLRIEFCDDVEEIIGVDKLRDISEIIGSEHNFFAQLEYLTISWGINLKGV-YPNPLPFPKLKKIKVRGCR  185 (238)
Q Consensus       108 ~-~~~l~~L~~L~i~~C~~l~~l~~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i-~~~~~~~~~L~~L~i~~C~  185 (238)
                      . ...+|+|.+|++++|..+..-..            ..+..|+.|++|.++.|..+--= -......|+|..|++.||-
T Consensus       307 tL~~rcp~l~~LDLSD~v~l~~~~~------------~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~v  374 (419)
T KOG2120|consen  307 TLVRRCPNLVHLDLSDSVMLKNDCF------------QEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGCV  374 (419)
T ss_pred             HHHHhCCceeeeccccccccCchHH------------HHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEecccc
Confidence            1 24789999999999987664211            45667999999999999765310 1134567999999999885


Q ss_pred             C
Q 026434          186 H  186 (238)
Q Consensus       186 ~  186 (238)
                      .
T Consensus       375 s  375 (419)
T KOG2120|consen  375 S  375 (419)
T ss_pred             C
Confidence            4

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.83  E-value=7.8e-05  Score=65.86  Aligned_cols=68  Identities=22%  Similarity=0.363  Sum_probs=45.7

Q ss_pred             cceeEEEEeecCCCCCcccchhhcccCCeEEEeecC-CceEEecccCccCcccccCCCCccEEEEecCCCCCcCcccccC
Q 026434           34 SITQSVGVYQCRSPPFNVFHLAYMENLQELELEYCN-LEEMKIDSTDEVKKLFQSGFRSLNTVHVFYCQKAKDLTWLVFV  112 (238)
Q Consensus        34 ~~L~~L~l~~c~~l~~~~~~l~~l~~L~~L~i~~c~-l~~i~~~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~l  112 (238)
                      .+++.|+|.+| .+++ ++.+.  .+|+.|.+++|. ++.++.           ...++|+.|.|.+|.+++.+|     
T Consensus        52 ~~l~~L~Is~c-~L~s-LP~LP--~sLtsL~Lsnc~nLtsLP~-----------~LP~nLe~L~Ls~Cs~L~sLP-----  111 (426)
T PRK15386         52 RASGRLYIKDC-DIES-LPVLP--NELTEITIENCNNLTTLPG-----------SIPEGLEKLTVCHCPEISGLP-----  111 (426)
T ss_pred             cCCCEEEeCCC-CCcc-cCCCC--CCCcEEEccCCCCcccCCc-----------hhhhhhhheEccCcccccccc-----
Confidence            57888888888 5554 33333  468888888888 765521           113578888888887776553     


Q ss_pred             CCccEEEEe
Q 026434          113 QNLKKLRIE  121 (238)
Q Consensus       113 ~~L~~L~i~  121 (238)
                      ++|++|.+.
T Consensus       112 ~sLe~L~L~  120 (426)
T PRK15386        112 ESVRSLEIK  120 (426)
T ss_pred             cccceEEeC
Confidence            457777764

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=97.65  E-value=2.3e-05  Score=61.63  Aligned_cols=103  Identities=13%  Similarity=0.183  Sum_probs=34.6

Q ss_pred             ceeEEEEeecCCCCCcccchh-hcccCCeEEEeecCCceEEecccCccCcccccCCCCccEEEEecCCCCCcCc-cc-cc
Q 026434           35 ITQSVGVYQCRSPPFNVFHLA-YMENLQELELEYCNLEEMKIDSTDEVKKLFQSGFRSLNTVHVFYCQKAKDLT-WL-VF  111 (238)
Q Consensus        35 ~L~~L~l~~c~~l~~~~~~l~-~l~~L~~L~i~~c~l~~i~~~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~-~~-~~  111 (238)
                      .++.|++.++.- . .+..++ .+.+|+.|++++|.++.+          .....+++|+.|++++- +++++. .+ ..
T Consensus        20 ~~~~L~L~~n~I-~-~Ie~L~~~l~~L~~L~Ls~N~I~~l----------~~l~~L~~L~~L~L~~N-~I~~i~~~l~~~   86 (175)
T PF14580_consen   20 KLRELNLRGNQI-S-TIENLGATLDKLEVLDLSNNQITKL----------EGLPGLPRLKTLDLSNN-RISSISEGLDKN   86 (175)
T ss_dssp             ------------------S--TT-TT--EEE-TTS--S------------TT----TT--EEE--SS----S-CHHHHHH
T ss_pred             cccccccccccc-c-cccchhhhhcCCCEEECCCCCCccc----------cCccChhhhhhcccCCC-CCCccccchHHh
Confidence            567788877642 2 234454 467888999998885544          12245788888888764 677774 23 35


Q ss_pred             CCCccEEEEecccccceecccccccccccccccccccccccceeecccccc
Q 026434          112 VQNLKKLRIEFCDDVEEIIGVDKLRDISEIIGSEHNFFAQLEYLTISWGIN  162 (238)
Q Consensus       112 l~~L~~L~i~~C~~l~~l~~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~  162 (238)
                      +|+|++|++++- ++.++-.      +     ..+..+|+|+.|.+.+.|-
T Consensus        87 lp~L~~L~L~~N-~I~~l~~------l-----~~L~~l~~L~~L~L~~NPv  125 (175)
T PF14580_consen   87 LPNLQELYLSNN-KISDLNE------L-----EPLSSLPKLRVLSLEGNPV  125 (175)
T ss_dssp             -TT--EEE-TTS----SCCC------C-----GGGGG-TT--EEE-TT-GG
T ss_pred             CCcCCEEECcCC-cCCChHH------h-----HHHHcCCCcceeeccCCcc
Confidence            889999988753 4443311      0     4556788999999988773

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=97.55  E-value=5.9e-05  Score=59.27  Aligned_cols=110  Identities=16%  Similarity=0.184  Sum_probs=35.1

Q ss_pred             cchhhcccCCeEEEeecCCceEEecccCccCcccccCCCCccEEEEecCCCCCcCcccccCCCccEEEEecccccceecc
Q 026434           52 FHLAYMENLQELELEYCNLEEMKIDSTDEVKKLFQSGFRSLNTVHVFYCQKAKDLTWLVFVQNLKKLRIEFCDDVEEIIG  131 (238)
Q Consensus        52 ~~l~~l~~L~~L~i~~c~l~~i~~~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~l~~L~~L~i~~C~~l~~l~~  131 (238)
                      +...+...+++|++.++.++.|.  ..       ...+.+|+.|+++++ +++.+..+..+++|++|++.+- .+..+. 
T Consensus        13 ~~~~n~~~~~~L~L~~n~I~~Ie--~L-------~~~l~~L~~L~Ls~N-~I~~l~~l~~L~~L~~L~L~~N-~I~~i~-   80 (175)
T PF14580_consen   13 AQYNNPVKLRELNLRGNQISTIE--NL-------GATLDKLEVLDLSNN-QITKLEGLPGLPRLKTLDLSNN-RISSIS-   80 (175)
T ss_dssp             -------------------------S---------TT-TT--EEE-TTS---S--TT----TT--EEE--SS----S-C-
T ss_pred             ccccccccccccccccccccccc--ch-------hhhhcCCCEEECCCC-CCccccCccChhhhhhcccCCC-CCCccc-
Confidence            34445567899999999855552  11       124789999999998 7888888888999999999763 444441 


Q ss_pred             ccccccccccccccc-ccccccceeeccccccccccCC--CCCCCCCccEEeEcCccC
Q 026434          132 VDKLRDISEIIGSEH-NFFAQLEYLTISWGINLKGVYP--NPLPFPKLKKIKVRGCRH  186 (238)
Q Consensus       132 ~~~~~~~~~~~~~~~-~~~p~L~~L~L~~~~~L~~i~~--~~~~~~~L~~L~i~~C~~  186 (238)
                                  ..+ ..+|+|++|++.+- ++.++..  ....+|+|+.|++.+.|-
T Consensus        81 ------------~~l~~~lp~L~~L~L~~N-~I~~l~~l~~L~~l~~L~~L~L~~NPv  125 (175)
T PF14580_consen   81 ------------EGLDKNLPNLQELYLSNN-KISDLNELEPLSSLPKLRVLSLEGNPV  125 (175)
T ss_dssp             ------------HHHHHH-TT--EEE-TTS----SCCCCGGGGG-TT--EEE-TT-GG
T ss_pred             ------------cchHHhCCcCCEEECcCC-cCCChHHhHHHHcCCCcceeeccCCcc
Confidence                        112 35899999999632 2333222  234689999999988764

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.45  E-value=2.8e-05  Score=73.44  Aligned_cols=129  Identities=15%  Similarity=0.150  Sum_probs=76.9

Q ss_pred             cceeEEEEeecCCCCCccc-ch-hhcccCCeEEEeecC-CceEEecccCccCcccccCCCCccEEEEecCCCCCcCcccc
Q 026434           34 SITQSVGVYQCRSPPFNVF-HL-AYMENLQELELEYCN-LEEMKIDSTDEVKKLFQSGFRSLNTVHVFYCQKAKDLTWLV  110 (238)
Q Consensus        34 ~~L~~L~l~~c~~l~~~~~-~l-~~l~~L~~L~i~~c~-l~~i~~~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~  110 (238)
                      .+|++|+|.+-......++ .+ ..+|+|+.|.|.+-. ...=...        --.+||+|..|+|+++ +++++..++
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~--------lc~sFpNL~sLDIS~T-nI~nl~GIS  192 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQ--------LCASFPNLRSLDISGT-NISNLSGIS  192 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHH--------HhhccCccceeecCCC-CccCcHHHh
Confidence            5778888877333211222 23 246888888888755 2210000        0136899999999998 688888888


Q ss_pred             cCCCccEEEEecccccceecccccccccccccccccccccccceeecccccccccc------CCCCCCCCCccEEeEcC
Q 026434          111 FVQNLKKLRIEFCDDVEEIIGVDKLRDISEIIGSEHNFFAQLEYLTISWGINLKGV------YPNPLPFPKLKKIKVRG  183 (238)
Q Consensus       111 ~l~~L~~L~i~~C~~l~~l~~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i------~~~~~~~~~L~~L~i~~  183 (238)
                      .+++|++|.+++..- +..      ...     ..+..+.+|+.|+++.=.+...-      -.....+|.|+.|+.++
T Consensus       193 ~LknLq~L~mrnLe~-e~~------~~l-----~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSg  259 (699)
T KOG3665|consen  193 RLKNLQVLSMRNLEF-ESY------QDL-----IDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSG  259 (699)
T ss_pred             ccccHHHHhccCCCC-Cch------hhH-----HHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCC
Confidence            899999988876532 111      000     34456788888888754332221      01234477777777663

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=97.43  E-value=0.00026  Score=45.41  Aligned_cols=38  Identities=18%  Similarity=0.165  Sum_probs=16.5

Q ss_pred             ceeEEEEeecCCCCC-cccchhhcccCCeEEEeecCCceE
Q 026434           35 ITQSVGVYQCRSPPF-NVFHLAYMENLQELELEYCNLEEM   73 (238)
Q Consensus        35 ~L~~L~l~~c~~l~~-~~~~l~~l~~L~~L~i~~c~l~~i   73 (238)
                      +|+.|.+.++ .+.. +...+..+++|+.|+++++.++.+
T Consensus         2 ~L~~L~l~~n-~l~~i~~~~f~~l~~L~~L~l~~N~l~~i   40 (61)
T PF13855_consen    2 NLESLDLSNN-KLTEIPPDSFSNLPNLETLDLSNNNLTSI   40 (61)
T ss_dssp             TESEEEETSS-TESEECTTTTTTGTTESEEEETSSSESEE
T ss_pred             cCcEEECCCC-CCCccCHHHHcCCCCCCEeEccCCccCcc
Confidence            3445555544 2222 122344455555555554444434

...

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.43  E-value=0.00026  Score=62.56  Aligned_cols=63  Identities=16%  Similarity=0.326  Sum_probs=46.2

Q ss_pred             hhhcccCCeEEEeecCCceEEecccCccCcccccCCCCccEEEEecCCCCCcCcccccCCCccEEEEeccccccee
Q 026434           54 LAYMENLQELELEYCNLEEMKIDSTDEVKKLFQSGFRSLNTVHVFYCQKAKDLTWLVFVQNLKKLRIEFCDDVEEI  129 (238)
Q Consensus        54 l~~l~~L~~L~i~~c~l~~i~~~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~l~~L~~L~i~~C~~l~~l  129 (238)
                      +..+.+++.|+|++|.++.++            ...++|+.|.+.+|.+++.++. ...++|++|.+.+|.++..+
T Consensus        48 ~~~~~~l~~L~Is~c~L~sLP------------~LP~sLtsL~Lsnc~nLtsLP~-~LP~nLe~L~Ls~Cs~L~sL  110 (426)
T PRK15386         48 IEEARASGRLYIKDCDIESLP------------VLPNELTEITIENCNNLTTLPG-SIPEGLEKLTVCHCPEISGL  110 (426)
T ss_pred             HHHhcCCCEEEeCCCCCcccC------------CCCCCCcEEEccCCCCcccCCc-hhhhhhhheEccCccccccc
Confidence            445688899999988866553            1234689999999998888764 22468999999998776544

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=97.43  E-value=0.00036  Score=44.70  Aligned_cols=30  Identities=17%  Similarity=0.279  Sum_probs=13.9

Q ss_pred             CccEEEEecCCCCCcCc--ccccCCCccEEEEe
Q 026434           91 SLNTVHVFYCQKAKDLT--WLVFVQNLKKLRIE  121 (238)
Q Consensus        91 ~L~~L~i~~C~~L~~l~--~~~~l~~L~~L~i~  121 (238)
                      +|+.|++++| +++.++  .+..+++|++|+++
T Consensus         2 ~L~~L~l~~n-~l~~i~~~~f~~l~~L~~L~l~   33 (61)
T PF13855_consen    2 NLESLDLSNN-KLTEIPPDSFSNLPNLETLDLS   33 (61)
T ss_dssp             TESEEEETSS-TESEECTTTTTTGTTESEEEET
T ss_pred             cCcEEECCCC-CCCccCHHHHcCCCCCCEeEcc
Confidence            4445555544 444443  23344555555554

...

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=97.35  E-value=1.8e-05  Score=68.93  Aligned_cols=58  Identities=12%  Similarity=0.115  Sum_probs=34.9

Q ss_pred             cccccccceeecccccccccc-----CCCCCCCCCccEEeEcCccCCCCCCCCCCCCCCcceE
Q 026434          146 HNFFAQLEYLTISWGINLKGV-----YPNPLPFPKLKKIKVRGCRHLKKLPLNSSSAKERRVV  203 (238)
Q Consensus       146 ~~~~p~L~~L~L~~~~~L~~i-----~~~~~~~~~L~~L~i~~C~~L~~lp~~~~~~~~~L~~  203 (238)
                      ....|.|+.|.++.|...+.-     .........|+.+.+.+||.+++--....+....|+.
T Consensus       368 s~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Ler  430 (483)
T KOG4341|consen  368 SRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLER  430 (483)
T ss_pred             ccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccce
Confidence            345678888888877666544     2233456677888888888776644443333334433

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=97.21  E-value=7.6e-05  Score=63.61  Aligned_cols=12  Identities=8%  Similarity=0.216  Sum_probs=6.8

Q ss_pred             CCCccEEeEcCc
Q 026434          173 FPKLKKIKVRGC  184 (238)
Q Consensus       173 ~~~L~~L~i~~C  184 (238)
                      +++|+.|++++|
T Consensus       220 ~~~L~~L~ls~n  231 (319)
T cd00116         220 LKSLEVLNLGDN  231 (319)
T ss_pred             cCCCCEEecCCC
Confidence            455555555555

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=97.16  E-value=2.5e-05  Score=65.60  Aligned_cols=129  Identities=21%  Similarity=0.186  Sum_probs=86.3

Q ss_pred             CCCcceeEEeee---hHHHHhhhcCchhhcceeEEEEeecCCCCC----cccchhhcccCCeEEEeecC--CceEEeccc
Q 026434            8 KHLKVLSWSFGS---SLAVQKFLKYPKLVSITQSVGVYQCRSPPF----NVFHLAYMENLQELELEYCN--LEEMKIDST   78 (238)
Q Consensus         8 ~~L~~L~i~~~~---~~~l~~l~~~~~l~~~L~~L~l~~c~~l~~----~~~~l~~l~~L~~L~i~~c~--l~~i~~~~~   78 (238)
                      ++|..|+++.++   ..+++.++...   +.|..|+|.-|...+.    .+..++  ++|..|+++||.  +..--+.. 
T Consensus       234 ~~L~~lnlsm~sG~t~n~~~ll~~sc---s~L~~LNlsWc~l~~~~Vtv~V~his--e~l~~LNlsG~rrnl~~sh~~t-  307 (419)
T KOG2120|consen  234 SNLVRLNLSMCSGFTENALQLLLSSC---SRLDELNLSWCFLFTEKVTVAVAHIS--ETLTQLNLSGYRRNLQKSHLST-  307 (419)
T ss_pred             ccceeeccccccccchhHHHHHHHhh---hhHhhcCchHhhccchhhhHHHhhhc--hhhhhhhhhhhHhhhhhhHHHH-
Confidence            456667776544   34455555554   4788999999976544    122333  799999999986  33111100 


Q ss_pred             CccCcccccCCCCccEEEEecCCCCCc--CcccccCCCccEEEEecccccceecccccccccccccccccccccccceee
Q 026434           79 DEVKKLFQSGFRSLNTVHVFYCQKAKD--LTWLVFVQNLKKLRIEFCDDVEEIIGVDKLRDISEIIGSEHNFFAQLEYLT  156 (238)
Q Consensus        79 ~~~~~~~~~~l~~L~~L~i~~C~~L~~--l~~~~~l~~L~~L~i~~C~~l~~l~~~~~~~~~~~~~~~~~~~~p~L~~L~  156 (238)
                            -....++|.+|++++|..+++  +..+..++.|++|.++.|+.+-   +..    +     ......|.|.+|+
T Consensus       308 ------L~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~---p~~----~-----~~l~s~psl~yLd  369 (419)
T KOG2120|consen  308 ------LVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDII---PET----L-----LELNSKPSLVYLD  369 (419)
T ss_pred             ------HHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCCC---hHH----e-----eeeccCcceEEEE
Confidence                  123578999999999998887  1235689999999999998652   110    0     3455678999999


Q ss_pred             cccc
Q 026434          157 ISWG  160 (238)
Q Consensus       157 L~~~  160 (238)
                      +.+|
T Consensus       370 v~g~  373 (419)
T KOG2120|consen  370 VFGC  373 (419)
T ss_pred             eccc
Confidence            8766

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=97.03  E-value=8.8e-06  Score=70.85  Aligned_cols=164  Identities=14%  Similarity=0.189  Sum_probs=103.0

Q ss_pred             cceeEEEEeecCCCCC-cccc-hhhcccCCeEEEeecC-CceEEecccCccCcccccCCCCccEEEEecCCCCCcCcc--
Q 026434           34 SITQSVGVYQCRSPPF-NVFH-LAYMENLQELELEYCN-LEEMKIDSTDEVKKLFQSGFRSLNTVHVFYCQKAKDLTW--  108 (238)
Q Consensus        34 ~~L~~L~l~~c~~l~~-~~~~-l~~l~~L~~L~i~~c~-l~~i~~~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~--  108 (238)
                      .-++.|.+++|.+... .+.. ..+++++++|.+.+|. +++......       ...+++|++|++..|..+++...  
T Consensus       138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sl-------a~~C~~l~~l~L~~c~~iT~~~Lk~  210 (483)
T KOG4341|consen  138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSL-------ARYCRKLRHLNLHSCSSITDVSLKY  210 (483)
T ss_pred             cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHH-------HHhcchhhhhhhcccchhHHHHHHH
Confidence            5689999999998765 3333 3678999999999999 775533221       24688999999999999988642  


Q ss_pred             -cccCCCccEEEEeccccccee----cccc-cc---cccc---cccc----cccccccccceeeccccccccccCC--CC
Q 026434          109 -LVFVQNLKKLRIEFCDDVEEI----IGVD-KL---RDIS---EIIG----SEHNFFAQLEYLTISWGINLKGVYP--NP  170 (238)
Q Consensus       109 -~~~l~~L~~L~i~~C~~l~~l----~~~~-~~---~~~~---~~~~----~~~~~~p~L~~L~L~~~~~L~~i~~--~~  170 (238)
                       ...+++|++|+++.|+.+..-    +..+ +.   ...+   +.+.    ......+.+..+++.+|..+++...  -.
T Consensus       211 la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~  290 (483)
T KOG4341|consen  211 LAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIA  290 (483)
T ss_pred             HHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHh
Confidence             347899999999999988651    1110 00   0000   0000    0011123344555556655554332  12


Q ss_pred             CCCCCccEEeEcCccCCCCCCCCCCCCC-CcceEE
Q 026434          171 LPFPKLKKIKVRGCRHLKKLPLNSSSAK-ERRVVI  204 (238)
Q Consensus       171 ~~~~~L~~L~i~~C~~L~~lp~~~~~~~-~~L~~~  204 (238)
                      ..+..|+.+..++|..+...+....... .+|++.
T Consensus       291 ~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l  325 (483)
T KOG4341|consen  291 CGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVL  325 (483)
T ss_pred             hhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEE
Confidence            3467899999999999887775544322 455544

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=97.00  E-value=7.1e-05  Score=68.72  Aligned_cols=48  Identities=19%  Similarity=0.137  Sum_probs=33.0

Q ss_pred             cccccccccceeeccccccccccCCCCCCCCCccEEeEcCccCCCCCCC
Q 026434          144 SEHNFFAQLEYLTISWGINLKGVYPNPLPFPKLKKIKVRGCRHLKKLPL  192 (238)
Q Consensus       144 ~~~~~~p~L~~L~L~~~~~L~~i~~~~~~~~~L~~L~i~~C~~L~~lp~  192 (238)
                      +.+-.+++|+.|.|. +..|..++....-++.|+.|+++.-|+|-.-|.
T Consensus       333 EglcRC~kL~kL~L~-~NrLiTLPeaIHlL~~l~vLDlreNpnLVMPPK  380 (1255)
T KOG0444|consen  333 EGLCRCVKLQKLKLD-HNRLITLPEAIHLLPDLKVLDLRENPNLVMPPK  380 (1255)
T ss_pred             hhhhhhHHHHHhccc-ccceeechhhhhhcCCcceeeccCCcCccCCCC
Confidence            455566777777775 445556665555678888888888888875553

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=96.95  E-value=0.001  Score=63.57  Aligned_cols=37  Identities=14%  Similarity=0.163  Sum_probs=19.9

Q ss_pred             cceeEEEEeecCCCCCcccchhhcccCCeEEEeecCCceE
Q 026434           34 SITQSVGVYQCRSPPFNVFHLAYMENLQELELEYCNLEEM   73 (238)
Q Consensus        34 ~~L~~L~l~~c~~l~~~~~~l~~l~~L~~L~i~~c~l~~i   73 (238)
                      .+|+.|++.++. +.. ++. .-..+|+.|++++|.+..+
T Consensus       220 ~nL~~L~Ls~N~-Lts-LP~-~l~~~L~~L~Ls~N~L~~L  256 (754)
T PRK15370        220 GNIKTLYANSNQ-LTS-IPA-TLPDTIQEMELSINRITEL  256 (754)
T ss_pred             cCCCEEECCCCc-ccc-CCh-hhhccccEEECcCCccCcC
Confidence            467777777653 332 221 1124677777777664433

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=96.94  E-value=0.00023  Score=60.58  Aligned_cols=166  Identities=16%  Similarity=0.029  Sum_probs=92.0

Q ss_pred             ccccCCCcceeEEeeehH--HHHhhhcCchhhcceeEEEEeecCCCCCcc----cchhhc-ccCCeEEEeecCCceEEec
Q 026434            4 LLGLKHLKVLSWSFGSSL--AVQKFLKYPKLVSITQSVGVYQCRSPPFNV----FHLAYM-ENLQELELEYCNLEEMKID   76 (238)
Q Consensus         4 L~~L~~L~~L~i~~~~~~--~l~~l~~~~~l~~~L~~L~l~~c~~l~~~~----~~l~~l-~~L~~L~i~~c~l~~i~~~   76 (238)
                      +..+.+|+.|+++.....  ....+...... ++|+.|++.+|.-.....    ..+..+ ++|+.|++++|.+..-...
T Consensus        77 l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~-~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~  155 (319)
T cd00116          77 LTKGCGLQELDLSDNALGPDGCGVLESLLRS-SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCE  155 (319)
T ss_pred             HHhcCceeEEEccCCCCChhHHHHHHHHhcc-CcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHH
Confidence            455778999988643321  11222121111 469999999986321111    234556 8999999999983311000


Q ss_pred             ccCccCcccccCCCCccEEEEecCCCCCc-----Cc-ccccCCCccEEEEecccccceeccccccccccccccccccccc
Q 026434           77 STDEVKKLFQSGFRSLNTVHVFYCQKAKD-----LT-WLVFVQNLKKLRIEFCDDVEEIIGVDKLRDISEIIGSEHNFFA  150 (238)
Q Consensus        77 ~~~~~~~~~~~~l~~L~~L~i~~C~~L~~-----l~-~~~~l~~L~~L~i~~C~~l~~l~~~~~~~~~~~~~~~~~~~~p  150 (238)
                      ..    ......+++|+.|++.+| .++.     ++ .+..+++|++|++++|. +....    .....    ..+..++
T Consensus       156 ~~----~~~~~~~~~L~~L~l~~n-~l~~~~~~~l~~~l~~~~~L~~L~L~~n~-i~~~~----~~~l~----~~~~~~~  221 (319)
T cd00116         156 AL----AKALRANRDLKELNLANN-GIGDAGIRALAEGLKANCNLEVLDLNNNG-LTDEG----ASALA----ETLASLK  221 (319)
T ss_pred             HH----HHHHHhCCCcCEEECcCC-CCchHHHHHHHHHHHhCCCCCEEeccCCc-cChHH----HHHHH----HHhcccC
Confidence            00    011234568999999887 4553     11 12345789999998884 22110    00000    2334578


Q ss_pred             ccceeeccccccccc-----cCCC-CCCCCCccEEeEcCcc
Q 026434          151 QLEYLTISWGINLKG-----VYPN-PLPFPKLKKIKVRGCR  185 (238)
Q Consensus       151 ~L~~L~L~~~~~L~~-----i~~~-~~~~~~L~~L~i~~C~  185 (238)
                      +|++|++++++ +.+     +... ....+.|+.|++.+|.
T Consensus       222 ~L~~L~ls~n~-l~~~~~~~l~~~~~~~~~~L~~L~l~~n~  261 (319)
T cd00116         222 SLEVLNLGDNN-LTDAGAAALASALLSPNISLLTLSLSCND  261 (319)
T ss_pred             CCCEEecCCCc-CchHHHHHHHHHHhccCCCceEEEccCCC
Confidence            89999998764 332     1110 1124789999998884

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=96.91  E-value=0.00056  Score=66.45  Aligned_cols=153  Identities=17%  Similarity=0.265  Sum_probs=89.6

Q ss_pred             HhhhcCchhhcceeEEEEeecCCCCC--cc-cc--hhh-cccCCeEEEeecC-CceEEecccCccCcccccCCCCccEEE
Q 026434           24 QKFLKYPKLVSITQSVGVYQCRSPPF--NV-FH--LAY-MENLQELELEYCN-LEEMKIDSTDEVKKLFQSGFRSLNTVH   96 (238)
Q Consensus        24 ~~l~~~~~l~~~L~~L~l~~c~~l~~--~~-~~--l~~-l~~L~~L~i~~c~-l~~i~~~~~~~~~~~~~~~l~~L~~L~   96 (238)
                      +.........++++.|.|.+|.....  .. ..  ... ++++..+.+.+|. +....          .....++|+.|+
T Consensus       707 ~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~----------~~~f~~~L~~l~  776 (889)
T KOG4658|consen  707 RTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLT----------WLLFAPHLTSLS  776 (889)
T ss_pred             ceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccccccc----------hhhccCcccEEE
Confidence            33344445567999999999987533  11 11  122 5677888888888 65431          123578999999


Q ss_pred             EecCCCCCcCcc-cccCCCccEEEEecccccceecccccccccccccccccccccccceeeccccccccccCCCCCCCCC
Q 026434           97 VFYCQKAKDLTW-LVFVQNLKKLRIEFCDDVEEIIGVDKLRDISEIIGSEHNFFAQLEYLTISWGINLKGVYPNPLPFPK  175 (238)
Q Consensus        97 i~~C~~L~~l~~-~~~l~~L~~L~i~~C~~l~~l~~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~~~~~~~~  175 (238)
                      +.+|+.+.++.+ ...+..++.+.+ .+..+...-......+.+.+. .....+++|+.+.+..||++.+       +|.
T Consensus       777 l~~~~~~e~~i~~~k~~~~l~~~i~-~f~~~~~l~~~~~l~~l~~i~-~~~l~~~~l~~~~ve~~p~l~~-------~P~  847 (889)
T KOG4658|consen  777 LVSCRLLEDIIPKLKALLELKELIL-PFNKLEGLRMLCSLGGLPQLY-WLPLSFLKLEELIVEECPKLGK-------LPL  847 (889)
T ss_pred             EecccccccCCCHHHHhhhcccEEe-cccccccceeeecCCCCceeE-ecccCccchhheehhcCccccc-------Ccc
Confidence            999998888632 333444443222 222222220000000000000 1223456677777777777665       578


Q ss_pred             ccEEeEcCc-cCCCCCCCCCC
Q 026434          176 LKKIKVRGC-RHLKKLPLNSS  195 (238)
Q Consensus       176 L~~L~i~~C-~~L~~lp~~~~  195 (238)
                      +.++.+.+| +++...|...+
T Consensus       848 ~~~~~i~~~~~~~~~~~~~~~  868 (889)
T KOG4658|consen  848 LSTLTIVGCEEKLKEYPDGEW  868 (889)
T ss_pred             ccccceeccccceeecCCccc
Confidence            889999997 99999997743

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=96.88  E-value=0.00013  Score=56.81  Aligned_cols=147  Identities=17%  Similarity=0.190  Sum_probs=92.1

Q ss_pred             cceeEEEEeecCCCCCcccchhhcccCCeEEEeecCCceEEecccCccCcccccCCCCccEEEEecCCCCCcCc-ccccC
Q 026434           34 SITQSVGVYQCRSPPFNVFHLAYMENLQELELEYCNLEEMKIDSTDEVKKLFQSGFRSLNTVHVFYCQKAKDLT-WLVFV  112 (238)
Q Consensus        34 ~~L~~L~l~~c~~l~~~~~~l~~l~~L~~L~i~~c~l~~i~~~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~-~~~~l  112 (238)
                      .++..|.++.-. +....+.+..+.+|+.|+++++.+++++         .++..+++|++|++. ..+|..+| .++++
T Consensus        33 s~ITrLtLSHNK-l~~vppnia~l~nlevln~~nnqie~lp---------~~issl~klr~lnvg-mnrl~~lprgfgs~  101 (264)
T KOG0617|consen   33 SNITRLTLSHNK-LTVVPPNIAELKNLEVLNLSNNQIEELP---------TSISSLPKLRILNVG-MNRLNILPRGFGSF  101 (264)
T ss_pred             hhhhhhhcccCc-eeecCCcHHHhhhhhhhhcccchhhhcC---------hhhhhchhhhheecc-hhhhhcCccccCCC
Confidence            467777776543 1113467888899999999988877663         455679999999874 66787777 46889


Q ss_pred             CCccEEEEecccccceecccc-------c----ccccccccccccccccccceeeccccccccccCCCCCCCCCccEEeE
Q 026434          113 QNLKKLRIEFCDDVEEIIGVD-------K----LRDISEIIGSEHNFFAQLEYLTISWGINLKGVYPNPLPFPKLKKIKV  181 (238)
Q Consensus       113 ~~L~~L~i~~C~~l~~l~~~~-------~----~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~~~~~~~~L~~L~i  181 (238)
                      |.|+.|++.+-.--+...+..       .    +....++....++.+.+|+-|.+.+- .|-+++...+.+..|+.|.|
T Consensus       102 p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdn-dll~lpkeig~lt~lrelhi  180 (264)
T KOG0617|consen  102 PALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDN-DLLSLPKEIGDLTRLRELHI  180 (264)
T ss_pred             chhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccC-chhhCcHHHHHHHHHHHHhc
Confidence            999999998753222211110       0    00001111245556667777766653 34445555556777888888


Q ss_pred             cCccCCCCCCCC
Q 026434          182 RGCRHLKKLPLN  193 (238)
Q Consensus       182 ~~C~~L~~lp~~  193 (238)
                      .+ -+|+-+|..
T Consensus       181 qg-nrl~vlppe  191 (264)
T KOG0617|consen  181 QG-NRLTVLPPE  191 (264)
T ss_pred             cc-ceeeecChh
Confidence            76 356666643

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=96.84  E-value=0.0023  Score=61.24  Aligned_cols=36  Identities=14%  Similarity=0.222  Sum_probs=21.3

Q ss_pred             CCccEEEEecCCCCCcCcccccCCCccEEEEeccccccee
Q 026434           90 RSLNTVHVFYCQKAKDLTWLVFVQNLKKLRIEFCDDVEEI  129 (238)
Q Consensus        90 ~~L~~L~i~~C~~L~~l~~~~~l~~L~~L~i~~C~~l~~l  129 (238)
                      .+|+.|++.++ +++.+|.  .+++|+.|+++++ ++..+
T Consensus       282 ~~L~~L~Ls~N-~Lt~LP~--~p~~L~~LdLS~N-~L~~L  317 (788)
T PRK15387        282 SGLCKLWIFGN-QLTSLPV--LPPGLQELSVSDN-QLASL  317 (788)
T ss_pred             hhcCEEECcCC-ccccccc--cccccceeECCCC-ccccC
Confidence            45666666665 4555543  3467777777765 44443

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=96.80  E-value=0.00033  Score=66.34  Aligned_cols=132  Identities=16%  Similarity=0.101  Sum_probs=80.1

Q ss_pred             cCCCcceeEEeeehHHHHhhhcCchhhcceeEEEEeecCCCCCcccc-hhhcccCCeEEEeecCCceEEecccCccCccc
Q 026434            7 LKHLKVLSWSFGSSLAVQKFLKYPKLVSITQSVGVYQCRSPPFNVFH-LAYMENLQELELEYCNLEEMKIDSTDEVKKLF   85 (238)
Q Consensus         7 L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~c~~l~~~~~~-l~~l~~L~~L~i~~c~l~~i~~~~~~~~~~~~   85 (238)
                      -.+|+.|+|+.....+-.........++.|++|.+.+-.-...++.. ..+++||..|+|+++.+..+          .+
T Consensus       121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl----------~G  190 (699)
T KOG3665|consen  121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL----------SG  190 (699)
T ss_pred             HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc----------HH
Confidence            35677788764332222222233455689999999886432223333 36899999999999996655          23


Q ss_pred             ccCCCCccEEEEecCCCCCc---CcccccCCCccEEEEeccccccee--cccccccccccccccccccccccceeecc
Q 026434           86 QSGFRSLNTVHVFYCQKAKD---LTWLVFVQNLKKLRIEFCDDVEEI--IGVDKLRDISEIIGSEHNFFAQLEYLTIS  158 (238)
Q Consensus        86 ~~~l~~L~~L~i~~C~~L~~---l~~~~~l~~L~~L~i~~C~~l~~l--~~~~~~~~~~~~~~~~~~~~p~L~~L~L~  158 (238)
                      +..+++|+.|.+.+.. +..   +-.+..+.+|+.|+|+.=.+...-  +...  .       +-...+|+|+.|+.+
T Consensus       191 IS~LknLq~L~mrnLe-~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qY--l-------ec~~~LpeLrfLDcS  258 (699)
T KOG3665|consen  191 ISRLKNLQVLSMRNLE-FESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQY--L-------ECGMVLPELRFLDCS  258 (699)
T ss_pred             HhccccHHHHhccCCC-CCchhhHHHHhcccCCCeeeccccccccchHHHHHH--H-------HhcccCccccEEecC
Confidence            4568888888777653 332   123457889999999875443322  1000  0       122347888888876

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=96.68  E-value=8e-05  Score=66.95  Aligned_cols=64  Identities=19%  Similarity=0.354  Sum_probs=40.4

Q ss_pred             hcccCCeEEEeecC-CceEEecccCccCcccccCCCCccEEEEecCCCCCcCc---ccccCCCccEEEEeccccc
Q 026434           56 YMENLQELELEYCN-LEEMKIDSTDEVKKLFQSGFRSLNTVHVFYCQKAKDLT---WLVFVQNLKKLRIEFCDDV  126 (238)
Q Consensus        56 ~l~~L~~L~i~~c~-l~~i~~~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~---~~~~l~~L~~L~i~~C~~l  126 (238)
                      .+.+|+.|++++|. +.++.+....       ..+++|+.|.+.+|..+++..   ....+++|++|++++|..+
T Consensus       241 ~~~~L~~l~l~~~~~isd~~l~~l~-------~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~  308 (482)
T KOG1947|consen  241 ICRKLKSLDLSGCGLVTDIGLSALA-------SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL  308 (482)
T ss_pred             hcCCcCccchhhhhccCchhHHHHH-------hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence            34566666666665 4433222111       136788888888888766632   2346788999999988876

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=96.64  E-value=0.001  Score=60.85  Aligned_cols=111  Identities=17%  Similarity=0.173  Sum_probs=63.9

Q ss_pred             hhcccCCeEEEeecCCceEEecccCccCcccccCCCCccEEEEecCCCCCcCcc--cc----------------------
Q 026434           55 AYMENLQELELEYCNLEEMKIDSTDEVKKLFQSGFRSLNTVHVFYCQKAKDLTW--LV----------------------  110 (238)
Q Consensus        55 ~~l~~L~~L~i~~c~l~~i~~~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~--~~----------------------  110 (238)
                      -.++.|+.|+++.+.++.|.++.+.        ..++|+.|++++- +++.++.  +.                      
T Consensus       290 fgLt~L~~L~lS~NaI~rih~d~Ws--------ftqkL~~LdLs~N-~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~a  360 (873)
T KOG4194|consen  290 FGLTSLEQLDLSYNAIQRIHIDSWS--------FTQKLKELDLSSN-RITRLDEGSFRVLSQLEELNLSHNSIDHLAEGA  360 (873)
T ss_pred             cccchhhhhccchhhhheeecchhh--------hcccceeEecccc-ccccCChhHHHHHHHhhhhcccccchHHHHhhH
Confidence            3566777777777766666655542        3566777766543 4554432  11                      


Q ss_pred             --cCCCccEEEEecccccceecccccccccccccccccccccccceeeccccccccccCCC-CCCCCCccEEeEcCcc
Q 026434          111 --FVQNLKKLRIEFCDDVEEIIGVDKLRDISEIIGSEHNFFAQLEYLTISWGINLKGVYPN-PLPFPKLKKIKVRGCR  185 (238)
Q Consensus       111 --~l~~L~~L~i~~C~~l~~l~~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~~-~~~~~~L~~L~i~~C~  185 (238)
                        .+.+|++|++++- .+.-.+.  ++.       ....++|+|+.|.+.+ .+|++|+.. ...+++||+|++.+-+
T Consensus       361 f~~lssL~~LdLr~N-~ls~~IE--Daa-------~~f~gl~~LrkL~l~g-Nqlk~I~krAfsgl~~LE~LdL~~Na  427 (873)
T KOG4194|consen  361 FVGLSSLHKLDLRSN-ELSWCIE--DAA-------VAFNGLPSLRKLRLTG-NQLKSIPKRAFSGLEALEHLDLGDNA  427 (873)
T ss_pred             HHHhhhhhhhcCcCC-eEEEEEe--cch-------hhhccchhhhheeecC-ceeeecchhhhccCcccceecCCCCc
Confidence              2344444444331 1111111  111       3455688999998875 368888764 3468899999887654

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=96.61  E-value=0.0089  Score=57.33  Aligned_cols=38  Identities=18%  Similarity=0.354  Sum_probs=17.6

Q ss_pred             cccceeeccccccccccCCCCCCCCCccEEeEcCccCCCCCC
Q 026434          150 AQLEYLTISWGINLKGVYPNPLPFPKLKKIKVRGCRHLKKLP  191 (238)
Q Consensus       150 p~L~~L~L~~~~~L~~i~~~~~~~~~L~~L~i~~C~~L~~lp  191 (238)
                      ++|+.|.++++ +|+.++...  .++|+.|++.++ +++.+|
T Consensus       283 ~sL~~L~Ls~N-~Lt~LP~~l--p~sL~~L~Ls~N-~Lt~LP  320 (754)
T PRK15370        283 EELRYLSVYDN-SIRTLPAHL--PSGITHLNVQSN-SLTALP  320 (754)
T ss_pred             CCCcEEECCCC-ccccCcccc--hhhHHHHHhcCC-ccccCC
Confidence            35666666554 444443211  134555555553 234444

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=96.55  E-value=0.00046  Score=60.74  Aligned_cols=61  Identities=20%  Similarity=0.301  Sum_probs=27.2

Q ss_pred             hhcccCCeEEEeecCCceEEecccCccCcccccCCCCccEEEEecCCCCC--cCcc-cccCCCccEEEEecc
Q 026434           55 AYMENLQELELEYCNLEEMKIDSTDEVKKLFQSGFRSLNTVHVFYCQKAK--DLTW-LVFVQNLKKLRIEFC  123 (238)
Q Consensus        55 ~~l~~L~~L~i~~c~l~~i~~~~~~~~~~~~~~~l~~L~~L~i~~C~~L~--~l~~-~~~l~~L~~L~i~~C  123 (238)
                      .++++|+.|+++.+.+.......       ....+++|+.|.++.|. +.  ++.| +..+|+|+.|.+..-
T Consensus       169 eqLp~Le~LNls~Nrl~~~~~s~-------~~~~l~~lK~L~l~~CG-ls~k~V~~~~~~fPsl~~L~L~~N  232 (505)
T KOG3207|consen  169 EQLPSLENLNLSSNRLSNFISSN-------TTLLLSHLKQLVLNSCG-LSWKDVQWILLTFPSLEVLYLEAN  232 (505)
T ss_pred             HhcccchhcccccccccCCcccc-------chhhhhhhheEEeccCC-CCHHHHHHHHHhCCcHHHhhhhcc
Confidence            45666666666655522111000       01245566666666662 22  1212 224555555555443

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=96.37  E-value=0.00088  Score=58.99  Aligned_cols=66  Identities=18%  Similarity=0.279  Sum_probs=39.5

Q ss_pred             cCCCCccEEEEecCCCCCcCc---ccccCCCccEEEEecccccceecccccccccccccccccccccccceeecccc
Q 026434           87 SGFRSLNTVHVFYCQKAKDLT---WLVFVQNLKKLRIEFCDDVEEIIGVDKLRDISEIIGSEHNFFAQLEYLTISWG  160 (238)
Q Consensus        87 ~~l~~L~~L~i~~C~~L~~l~---~~~~l~~L~~L~i~~C~~l~~l~~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~  160 (238)
                      ..++.|+.|+|++-+ +.+.+   -.+.+|.|..|++..|. +.++-. .+....     .....||+|++|.+..-
T Consensus       243 ~i~~~L~~LdLs~N~-li~~~~~~~~~~l~~L~~Lnls~tg-i~si~~-~d~~s~-----~kt~~f~kL~~L~i~~N  311 (505)
T KOG3207|consen  243 KILQTLQELDLSNNN-LIDFDQGYKVGTLPGLNQLNLSSTG-IASIAE-PDVESL-----DKTHTFPKLEYLNISEN  311 (505)
T ss_pred             hhhhHHhhccccCCc-ccccccccccccccchhhhhccccC-cchhcC-CCccch-----hhhcccccceeeecccC
Confidence            456677888887653 44433   35678888888888773 333311 111110     33467899999988643

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.35  E-value=0.00021  Score=56.80  Aligned_cols=67  Identities=16%  Similarity=0.232  Sum_probs=37.2

Q ss_pred             CCCCccEEEEecCCCCCcCc--cc-ccCCCccEEEEecccccceecccccccccccccccccccccccceeecccccccc
Q 026434           88 GFRSLNTVHVFYCQKAKDLT--WL-VFVQNLKKLRIEFCDDVEEIIGVDKLRDISEIIGSEHNFFAQLEYLTISWGINLK  164 (238)
Q Consensus        88 ~l~~L~~L~i~~C~~L~~l~--~~-~~l~~L~~L~i~~C~~l~~l~~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~  164 (238)
                      .++.++.|.+.+|..+-+..  .+ +..|+|+.|+|++|+.+++- +      +     ..+..|++|+.|.|.+++...
T Consensus       123 ~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~-G------L-----~~L~~lknLr~L~l~~l~~v~  190 (221)
T KOG3864|consen  123 DLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDG-G------L-----ACLLKLKNLRRLHLYDLPYVA  190 (221)
T ss_pred             ccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechh-H------H-----HHHHHhhhhHHHHhcCchhhh
Confidence            45566666666665555531  11 24566777777777665543 0      0     244556666666666666554


Q ss_pred             cc
Q 026434          165 GV  166 (238)
Q Consensus       165 ~i  166 (238)
                      ..
T Consensus       191 ~~  192 (221)
T KOG3864|consen  191 NL  192 (221)
T ss_pred             ch
Confidence            43

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=96.30  E-value=0.0052  Score=36.69  Aligned_cols=32  Identities=22%  Similarity=0.224  Sum_probs=20.4

Q ss_pred             CccEEEEecCCCCCcCcc-cccCCCccEEEEecc
Q 026434           91 SLNTVHVFYCQKAKDLTW-LVFVQNLKKLRIEFC  123 (238)
Q Consensus        91 ~L~~L~i~~C~~L~~l~~-~~~l~~L~~L~i~~C  123 (238)
                      +|+.|+++++ ++++++. +..+++|+.|+++++
T Consensus         2 ~L~~L~l~~N-~i~~l~~~l~~l~~L~~L~l~~N   34 (44)
T PF12799_consen    2 NLEELDLSNN-QITDLPPELSNLPNLETLNLSNN   34 (44)
T ss_dssp             T-SEEEETSS-S-SSHGGHGTTCTTSSEEEETSS
T ss_pred             cceEEEccCC-CCcccCchHhCCCCCCEEEecCC
Confidence            5667777666 5666665 667777777777666

...

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=96.24  E-value=0.018  Score=55.40  Aligned_cols=50  Identities=20%  Similarity=0.102  Sum_probs=25.7

Q ss_pred             cCCeEEEeecCCceEEecccCccCcccccCCCCccEEEEecCCCCCcCcccccCCCccEEEEecc
Q 026434           59 NLQELELEYCNLEEMKIDSTDEVKKLFQSGFRSLNTVHVFYCQKAKDLTWLVFVQNLKKLRIEFC  123 (238)
Q Consensus        59 ~L~~L~i~~c~l~~i~~~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~l~~L~~L~i~~C  123 (238)
                      +|+.|.+.++.++.++            ...++|+.|+++++ +++.+|.  .+++|++|++.++
T Consensus       223 ~L~~L~L~~N~Lt~LP------------~lp~~Lk~LdLs~N-~LtsLP~--lp~sL~~L~Ls~N  272 (788)
T PRK15387        223 HITTLVIPDNNLTSLP------------ALPPELRTLEVSGN-QLTSLPV--LPPGLLELSIFSN  272 (788)
T ss_pred             CCCEEEccCCcCCCCC------------CCCCCCcEEEecCC-ccCcccC--cccccceeeccCC
Confidence            5666666655544331            12355666666554 5555542  2345555555554

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=96.22  E-value=0.0038  Score=57.18  Aligned_cols=187  Identities=12%  Similarity=0.093  Sum_probs=92.5

Q ss_pred             ccccccCCCcceeEEeeehHHHHhhhcCchhhcceeEEEEeecCCCCC-cccchhhcccCCeEEEeecCCceEEecccCc
Q 026434            2 KELLGLKHLKVLSWSFGSSLAVQKFLKYPKLVSITQSVGVYQCRSPPF-NVFHLAYMENLQELELEYCNLEEMKIDSTDE   80 (238)
Q Consensus         2 ~eL~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~c~~l~~-~~~~l~~l~~L~~L~i~~c~l~~i~~~~~~~   80 (238)
                      +++.++.+|+.+.++...-..++.+.+.   .++++.|.+..-. ..+ .-..++.++.|+.|+++.+.+.++.......
T Consensus        96 ~~f~nl~nLq~v~l~~N~Lt~IP~f~~~---sghl~~L~L~~N~-I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~  171 (873)
T KOG4194|consen   96 EFFYNLPNLQEVNLNKNELTRIPRFGHE---SGHLEKLDLRHNL-ISSVTSEELSALPALRSLDLSRNLISEIPKPSFPA  171 (873)
T ss_pred             HHHhcCCcceeeeeccchhhhccccccc---ccceeEEeeeccc-cccccHHHHHhHhhhhhhhhhhchhhcccCCCCCC
Confidence            4567788888888865444444444333   3577777776532 111 1123455566666666655433332111100


Q ss_pred             c-------------Cc---ccccCCCCccEEEEecCCCCCcCcc--cccCCCccEEEEecccccceeccccccccccccc
Q 026434           81 V-------------KK---LFQSGFRSLNTVHVFYCQKAKDLTW--LVFVQNLKKLRIEFCDDVEEIIGVDKLRDISEII  142 (238)
Q Consensus        81 ~-------------~~---~~~~~l~~L~~L~i~~C~~L~~l~~--~~~l~~L~~L~i~~C~~l~~l~~~~~~~~~~~~~  142 (238)
                      +             +.   .....|.+|..|.+++- +++.+|.  +..+|.|+.|++..- .++.+ ..          
T Consensus       172 ~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrN-rittLp~r~Fk~L~~L~~LdLnrN-~iriv-e~----------  238 (873)
T KOG4194|consen  172 KVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRN-RITTLPQRSFKRLPKLESLDLNRN-RIRIV-EG----------  238 (873)
T ss_pred             CCCceEEeeccccccccccccccccchheeeecccC-cccccCHHHhhhcchhhhhhcccc-ceeee-hh----------
Confidence            0             00   01123444555555543 4555553  345777777776542 33222 00          


Q ss_pred             ccccccccccceeeccc-------------ccc----------ccccCC-CCCCCCCccEEeEcCccCCCCCCCCCCCCC
Q 026434          143 GSEHNFFAQLEYLTISW-------------GIN----------LKGVYP-NPLPFPKLKKIKVRGCRHLKKLPLNSSSAK  198 (238)
Q Consensus       143 ~~~~~~~p~L~~L~L~~-------------~~~----------L~~i~~-~~~~~~~L~~L~i~~C~~L~~lp~~~~~~~  198 (238)
                       ....++++|+.|.+..             |.+          +.+... ....+.+|+.|+++. -.+.++-...++.+
T Consensus       239 -ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~-NaI~rih~d~Wsft  316 (873)
T KOG4194|consen  239 -LTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSY-NAIQRIHIDSWSFT  316 (873)
T ss_pred             -hhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccch-hhhheeecchhhhc
Confidence             2333445555444421             122          222222 234567777777764 35667777777777


Q ss_pred             CcceEEEch
Q 026434          199 ERRVVIEGS  207 (238)
Q Consensus       199 ~~L~~~~~~  207 (238)
                      .+|+..+=.
T Consensus       317 qkL~~LdLs  325 (873)
T KOG4194|consen  317 QKLKELDLS  325 (873)
T ss_pred             ccceeEecc
Confidence            777766433

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=96.15  E-value=0.00087  Score=52.32  Aligned_cols=109  Identities=16%  Similarity=0.203  Sum_probs=66.4

Q ss_pred             ccchhhcccCCeEEEeecCCceEEecccCccCcccccCCCCccEEEEecCCCCCcCc-ccccCCCccEEEEeccccccee
Q 026434           51 VFHLAYMENLQELELEYCNLEEMKIDSTDEVKKLFQSGFRSLNTVHVFYCQKAKDLT-WLVFVQNLKKLRIEFCDDVEEI  129 (238)
Q Consensus        51 ~~~l~~l~~L~~L~i~~c~l~~i~~~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~-~~~~l~~L~~L~i~~C~~l~~l  129 (238)
                      ++.+-++.++..|.++.+.+..+         ++.+..+.+|+.|++.+- .++.+| .++++|.|+.|++. ...+..+
T Consensus        26 ~~gLf~~s~ITrLtLSHNKl~~v---------ppnia~l~nlevln~~nn-qie~lp~~issl~klr~lnvg-mnrl~~l   94 (264)
T KOG0617|consen   26 LPGLFNMSNITRLTLSHNKLTVV---------PPNIAELKNLEVLNLSNN-QIEELPTSISSLPKLRILNVG-MNRLNIL   94 (264)
T ss_pred             cccccchhhhhhhhcccCceeec---------CCcHHHhhhhhhhhcccc-hhhhcChhhhhchhhhheecc-hhhhhcC
Confidence            44455667777777777764433         244556778888887764 577776 57788888888874 3333322


Q ss_pred             cccccccccccccccccccccccceeeccccc-cccccCCCCCCCCCccEEeEcC
Q 026434          130 IGVDKLRDISEIIGSEHNFFAQLEYLTISWGI-NLKGVYPNPLPFPKLKKIKVRG  183 (238)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~-~L~~i~~~~~~~~~L~~L~i~~  183 (238)
                      +             ...+.||.|+.|++..-. +=.+++...+.+..|+.|.+.+
T Consensus        95 p-------------rgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~d  136 (264)
T KOG0617|consen   95 P-------------RGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGD  136 (264)
T ss_pred             c-------------cccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcC
Confidence            1             466778888888886421 1123443344445555555544

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=96.04  E-value=0.00085  Score=61.88  Aligned_cols=44  Identities=16%  Similarity=0.213  Sum_probs=22.7

Q ss_pred             cccccceeeccccccccccCCCCCCCCCccEEeEcCccCCCCCCCC
Q 026434          148 FFAQLEYLTISWGINLKGVYPNPLPFPKLKKIKVRGCRHLKKLPLN  193 (238)
Q Consensus       148 ~~p~L~~L~L~~~~~L~~i~~~~~~~~~L~~L~i~~C~~L~~lp~~  193 (238)
                      .+++|+.|+|++- +++.+..+...+.+|++|+++. -+|+.+|..
T Consensus       243 ~l~~LrrLNLS~N-~iteL~~~~~~W~~lEtLNlSr-NQLt~LP~a  286 (1255)
T KOG0444|consen  243 KLRNLRRLNLSGN-KITELNMTEGEWENLETLNLSR-NQLTVLPDA  286 (1255)
T ss_pred             hhhhhheeccCcC-ceeeeeccHHHHhhhhhhcccc-chhccchHH
Confidence            4456666666542 3344333344456677776654 245555543

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=95.92  E-value=0.001  Score=56.22  Aligned_cols=127  Identities=21%  Similarity=0.140  Sum_probs=73.8

Q ss_pred             CCCcceeEEeeehHHHHhhhcCchhhcceeEEEEeecCCCCCcccchhhcccCCeEEEeecCCceEEecccCccCccccc
Q 026434            8 KHLKVLSWSFGSSLAVQKFLKYPKLVSITQSVGVYQCRSPPFNVFHLAYMENLQELELEYCNLEEMKIDSTDEVKKLFQS   87 (238)
Q Consensus         8 ~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~c~~l~~~~~~l~~l~~L~~L~i~~c~l~~i~~~~~~~~~~~~~~   87 (238)
                      +.|+.++++.....   .+-++-++.+.++.|.++.-+- . .+.++..+++|.+|+++++.+..+.  +++       .
T Consensus       284 q~LtelDLS~N~I~---~iDESvKL~Pkir~L~lS~N~i-~-~v~nLa~L~~L~~LDLS~N~Ls~~~--Gwh-------~  349 (490)
T KOG1259|consen  284 QELTELDLSGNLIT---QIDESVKLAPKLRRLILSQNRI-R-TVQNLAELPQLQLLDLSGNLLAECV--GWH-------L  349 (490)
T ss_pred             hhhhhccccccchh---hhhhhhhhccceeEEeccccce-e-eehhhhhcccceEeecccchhHhhh--hhH-------h
Confidence            34555555433322   2333445566778887765422 2 2445777778888888877644332  211       2


Q ss_pred             CCCCccEEEEecCCCCCcCcccccCCCccEEEEecccccceecccccccccccccccccccccccceeeccccc
Q 026434           88 GFRSLNTVHVFYCQKAKDLTWLVFVQNLKKLRIEFCDDVEEIIGVDKLRDISEIIGSEHNFFAQLEYLTISWGI  161 (238)
Q Consensus        88 ~l~~L~~L~i~~C~~L~~l~~~~~l~~L~~L~i~~C~~l~~l~~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~  161 (238)
                      .+-|.+.|.+.+- .+.++..+..+=+|+.|++++- +++++-      ++     ..++.+|+|+.+.+.+-|
T Consensus       350 KLGNIKtL~La~N-~iE~LSGL~KLYSLvnLDl~~N-~Ie~ld------eV-----~~IG~LPCLE~l~L~~NP  410 (490)
T KOG1259|consen  350 KLGNIKTLKLAQN-KIETLSGLRKLYSLVNLDLSSN-QIEELD------EV-----NHIGNLPCLETLRLTGNP  410 (490)
T ss_pred             hhcCEeeeehhhh-hHhhhhhhHhhhhheecccccc-chhhHH------Hh-----cccccccHHHHHhhcCCC
Confidence            4667777777653 5666666666777777777653 333331      11     466778888888776654

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=95.91  E-value=0.01  Score=35.38  Aligned_cols=38  Identities=24%  Similarity=0.337  Sum_probs=18.2

Q ss_pred             cCCeEEEeecCCceEEecccCccCcccccCCCCccEEEEecCCCCCcC
Q 026434           59 NLQELELEYCNLEEMKIDSTDEVKKLFQSGFRSLNTVHVFYCQKAKDL  106 (238)
Q Consensus        59 ~L~~L~i~~c~l~~i~~~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l  106 (238)
                      +|++|+++++.++++.         +....+++|+.|+++++ .++++
T Consensus         2 ~L~~L~l~~N~i~~l~---------~~l~~l~~L~~L~l~~N-~i~~i   39 (44)
T PF12799_consen    2 NLEELDLSNNQITDLP---------PELSNLPNLETLNLSNN-PISDI   39 (44)
T ss_dssp             T-SEEEETSSS-SSHG---------GHGTTCTTSSEEEETSS-CCSBE
T ss_pred             cceEEEccCCCCcccC---------chHhCCCCCCEEEecCC-CCCCC
Confidence            4556666655543331         11344566666666655 34444

...

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=95.81  E-value=0.00042  Score=62.29  Aligned_cols=83  Identities=23%  Similarity=0.259  Sum_probs=46.2

Q ss_pred             cceeEEEEeecCCCCC-cccchh-hcccCCeEEEeecC-CceEEecccCccCcccccCCCCccEEEEecCCCCCcCc---
Q 026434           34 SITQSVGVYQCRSPPF-NVFHLA-YMENLQELELEYCN-LEEMKIDSTDEVKKLFQSGFRSLNTVHVFYCQKAKDLT---  107 (238)
Q Consensus        34 ~~L~~L~l~~c~~l~~-~~~~l~-~l~~L~~L~i~~c~-l~~i~~~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~---  107 (238)
                      ++++.|.+..|..+.. .+..+. .+++|+.|.+.+|. +.+.-+...       ...+++|++|++++|..+++-.   
T Consensus       243 ~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i-------~~~~~~L~~L~l~~c~~~~d~~l~~  315 (482)
T KOG1947|consen  243 RKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSI-------AERCPSLRELDLSGCHGLTDSGLEA  315 (482)
T ss_pred             CCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHH-------HHhcCcccEEeeecCccchHHHHHH
Confidence            5677777777765444 333333 26677777777777 543311111       1246677777777777765521   


Q ss_pred             ccccCCCccEEEEecc
Q 026434          108 WLVFVQNLKKLRIEFC  123 (238)
Q Consensus       108 ~~~~l~~L~~L~i~~C  123 (238)
                      ....+++|+.|.+..+
T Consensus       316 ~~~~c~~l~~l~~~~~  331 (482)
T KOG1947|consen  316 LLKNCPNLRELKLLSL  331 (482)
T ss_pred             HHHhCcchhhhhhhhc
Confidence            2334565555544443

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.37  E-value=0.00048  Score=57.53  Aligned_cols=33  Identities=15%  Similarity=0.196  Sum_probs=16.2

Q ss_pred             ceeEEEEeecCCCCCcccchhhcccCCeEEEeecC
Q 026434           35 ITQSVGVYQCRSPPFNVFHLAYMENLQELELEYCN   69 (238)
Q Consensus        35 ~L~~L~l~~c~~l~~~~~~l~~l~~L~~L~i~~c~   69 (238)
                      +.++|+.++|+ +. +++-..+|+.|+.|.++-+.
T Consensus        20 ~vkKLNcwg~~-L~-DIsic~kMp~lEVLsLSvNk   52 (388)
T KOG2123|consen   20 NVKKLNCWGCG-LD-DISICEKMPLLEVLSLSVNK   52 (388)
T ss_pred             HhhhhcccCCC-cc-HHHHHHhcccceeEEeeccc
Confidence            44555555553 11 23444555566655555433

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=95.23  E-value=0.0037  Score=59.89  Aligned_cols=22  Identities=27%  Similarity=0.397  Sum_probs=11.1

Q ss_pred             cchhhcccCCeEEEeecCCceE
Q 026434           52 FHLAYMENLQELELEYCNLEEM   73 (238)
Q Consensus        52 ~~l~~l~~L~~L~i~~c~l~~i   73 (238)
                      +.+.++++||.|+++++.+..+
T Consensus       377 p~l~~~~hLKVLhLsyNrL~~f  398 (1081)
T KOG0618|consen  377 PVLVNFKHLKVLHLSYNRLNSF  398 (1081)
T ss_pred             hhhccccceeeeeecccccccC
Confidence            3344555555555555544333

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=94.94  E-value=0.004  Score=59.64  Aligned_cols=107  Identities=20%  Similarity=0.195  Sum_probs=71.8

Q ss_pred             hcceeEEEEeecCCCCC-cccchhhcccCCeEEEeecCCceEEecccCccCcccccCCCCccEEEEecCCCCCcCccccc
Q 026434           33 VSITQSVGVYQCRSPPF-NVFHLAYMENLQELELEYCNLEEMKIDSTDEVKKLFQSGFRSLNTVHVFYCQKAKDLTWLVF  111 (238)
Q Consensus        33 ~~~L~~L~l~~c~~l~~-~~~~l~~l~~L~~L~i~~c~l~~i~~~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~  111 (238)
                      +++|+.|++.+- .+.+ +-..+.+++.|++|+++|+.++.++.         ....++.|+.|... -+.+..+|.+..
T Consensus       382 ~~hLKVLhLsyN-rL~~fpas~~~kle~LeeL~LSGNkL~~Lp~---------tva~~~~L~tL~ah-sN~l~~fPe~~~  450 (1081)
T KOG0618|consen  382 FKHLKVLHLSYN-RLNSFPASKLRKLEELEELNLSGNKLTTLPD---------TVANLGRLHTLRAH-SNQLLSFPELAQ  450 (1081)
T ss_pred             ccceeeeeeccc-ccccCCHHHHhchHHhHHHhcccchhhhhhH---------HHHhhhhhHHHhhc-CCceeechhhhh
Confidence            468888888764 3333 33457889999999999999887752         22346677766433 345667777788


Q ss_pred             CCCccEEEEecccccceecccccccccccccccccccccccceeeccccccc
Q 026434          112 VQNLKKLRIEFCDDVEEIIGVDKLRDISEIIGSEHNFFAQLEYLTISWGINL  163 (238)
Q Consensus       112 l~~L~~L~i~~C~~l~~l~~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L  163 (238)
                      ++.|+.+++ +|.++..+.-.            ....-|+|++|++.+-..+
T Consensus       451 l~qL~~lDl-S~N~L~~~~l~------------~~~p~p~LkyLdlSGN~~l  489 (1081)
T KOG0618|consen  451 LPQLKVLDL-SCNNLSEVTLP------------EALPSPNLKYLDLSGNTRL  489 (1081)
T ss_pred             cCcceEEec-ccchhhhhhhh------------hhCCCcccceeeccCCccc
Confidence            888999888 56777655211            1111278888888876653

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=94.89  E-value=0.02  Score=26.84  Aligned_cols=17  Identities=35%  Similarity=0.769  Sum_probs=9.9

Q ss_pred             CCccEEeEcCccCCCCCC
Q 026434          174 PKLKKIKVRGCRHLKKLP  191 (238)
Q Consensus       174 ~~L~~L~i~~C~~L~~lp  191 (238)
                      ++|+.|++++|. |+.+|
T Consensus         1 ~~L~~L~l~~n~-L~~lP   17 (17)
T PF13504_consen    1 PNLRTLDLSNNR-LTSLP   17 (17)
T ss_dssp             TT-SEEEETSS---SSE-
T ss_pred             CccCEEECCCCC-CCCCc
Confidence            467888888887 77766

...

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.83  E-value=0.0048  Score=49.20  Aligned_cols=65  Identities=17%  Similarity=0.289  Sum_probs=45.5

Q ss_pred             cceeEEEEeecCCCCC-cccchh-hcccCCeEEEeecC-CceEEecccCccCcccccCCCCccEEEEecCCCCCcC
Q 026434           34 SITQSVGVYQCRSPPF-NVFHLA-YMENLQELELEYCN-LEEMKIDSTDEVKKLFQSGFRSLNTVHVFYCQKAKDL  106 (238)
Q Consensus        34 ~~L~~L~l~~c~~l~~-~~~~l~-~l~~L~~L~i~~c~-l~~i~~~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l  106 (238)
                      +.|+.|.+.+|..+.. -+..++ -.++|+.|+|++|+ +++--..        ....|++|+.|+|.+.+...++
T Consensus       125 ~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~--------~L~~lknLr~L~l~~l~~v~~~  192 (221)
T KOG3864|consen  125 RSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLA--------CLLKLKNLRRLHLYDLPYVANL  192 (221)
T ss_pred             chhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHH--------HHHHhhhhHHHHhcCchhhhch
Confidence            5788899999987765 333332 34799999999999 7754222        2346889999998877665553

>PLN03150 hypothetical protein; Provisional

Probab=93.98  E-value=0.11  Score=48.94  Aligned_cols=36  Identities=17%  Similarity=0.284  Sum_probs=18.3

Q ss_pred             cCCCCccEEEEecCCCCC-cCc-ccccCCCccEEEEecc
Q 026434           87 SGFRSLNTVHVFYCQKAK-DLT-WLVFVQNLKKLRIEFC  123 (238)
Q Consensus        87 ~~l~~L~~L~i~~C~~L~-~l~-~~~~l~~L~~L~i~~C  123 (238)
                      ..+++|+.|+++++ +++ .++ .+..+++|+.|++.++
T Consensus       439 ~~L~~L~~L~Ls~N-~l~g~iP~~~~~l~~L~~LdLs~N  476 (623)
T PLN03150        439 SKLRHLQSINLSGN-SIRGNIPPSLGSITSLEVLDLSYN  476 (623)
T ss_pred             hCCCCCCEEECCCC-cccCcCChHHhCCCCCCEEECCCC
Confidence            34555666665554 233 233 2445556666655554

>PLN03150 hypothetical protein; Provisional

Probab=93.97  E-value=0.1  Score=49.19  Aligned_cols=61  Identities=15%  Similarity=0.169  Sum_probs=31.9

Q ss_pred             chhhcccCCeEEEeecC-CceEEecccCccCcccccCCCCccEEEEecCCCCC-cCc-ccccCCCccEEEEecc
Q 026434           53 HLAYMENLQELELEYCN-LEEMKIDSTDEVKKLFQSGFRSLNTVHVFYCQKAK-DLT-WLVFVQNLKKLRIEFC  123 (238)
Q Consensus        53 ~l~~l~~L~~L~i~~c~-l~~i~~~~~~~~~~~~~~~l~~L~~L~i~~C~~L~-~l~-~~~~l~~L~~L~i~~C  123 (238)
                      .+.++++|+.|++++|. ...++         .....+++|+.|+++++ ++. .+| .++.+++|+.|++.++
T Consensus       437 ~i~~L~~L~~L~Ls~N~l~g~iP---------~~~~~l~~L~~LdLs~N-~lsg~iP~~l~~L~~L~~L~Ls~N  500 (623)
T PLN03150        437 DISKLRHLQSINLSGNSIRGNIP---------PSLGSITSLEVLDLSYN-SFNGSIPESLGQLTSLRILNLNGN  500 (623)
T ss_pred             HHhCCCCCCEEECCCCcccCcCC---------hHHhCCCCCCEEECCCC-CCCCCCchHHhcCCCCCEEECcCC
Confidence            34556666666666665 22221         12234566666666655 333 233 2455666666666655

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.97  E-value=0.066  Score=45.53  Aligned_cols=14  Identities=7%  Similarity=-0.009  Sum_probs=8.9

Q ss_pred             cCCCccEEEEeccc
Q 026434          111 FVQNLKKLRIEFCD  124 (238)
Q Consensus       111 ~l~~L~~L~i~~C~  124 (238)
                      .+||+..+.+..|+
T Consensus       197 ~Fpnv~sv~v~e~P  210 (418)
T KOG2982|consen  197 IFPNVNSVFVCEGP  210 (418)
T ss_pred             hcccchheeeecCc
Confidence            46677766666664

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=92.46  E-value=0.038  Score=47.00  Aligned_cols=101  Identities=17%  Similarity=0.081  Sum_probs=52.0

Q ss_pred             cCCCCccEEEEecCCCCCcCcccccCCCccEEEEecccccceeccccccc-cc-----c--ccc-ccccccccccceeec
Q 026434           87 SGFRSLNTVHVFYCQKAKDLTWLVFVQNLKKLRIEFCDDVEEIIGVDKLR-DI-----S--EII-GSEHNFFAQLEYLTI  157 (238)
Q Consensus        87 ~~l~~L~~L~i~~C~~L~~l~~~~~l~~L~~L~i~~C~~l~~l~~~~~~~-~~-----~--~~~-~~~~~~~p~L~~L~L  157 (238)
                      .-.|.++.|++++- ++..+..+..+++|+.|++++- .+.++.+..... ..     .  .++ -..+..+=+|..|++
T Consensus       304 KL~Pkir~L~lS~N-~i~~v~nLa~L~~L~~LDLS~N-~Ls~~~Gwh~KLGNIKtL~La~N~iE~LSGL~KLYSLvnLDl  381 (490)
T KOG1259|consen  304 KLAPKLRRLILSQN-RIRTVQNLAELPQLQLLDLSGN-LLAECVGWHLKLGNIKTLKLAQNKIETLSGLRKLYSLVNLDL  381 (490)
T ss_pred             hhccceeEEecccc-ceeeehhhhhcccceEeecccc-hhHhhhhhHhhhcCEeeeehhhhhHhhhhhhHhhhhheeccc
Confidence            34677777777654 4555556777888888888763 233222211000 00     0  000 022333344555555


Q ss_pred             ccc--ccccccCCCCCCCCCccEEeEcCccCCCCCC
Q 026434          158 SWG--INLKGVYPNPLPFPKLKKIKVRGCRHLKKLP  191 (238)
Q Consensus       158 ~~~--~~L~~i~~~~~~~~~L~~L~i~~C~~L~~lp  191 (238)
                      .+-  .++... .+.+.+|.|+.+.+.+-|- ..+|
T Consensus       382 ~~N~Ie~ldeV-~~IG~LPCLE~l~L~~NPl-~~~v  415 (490)
T KOG1259|consen  382 SSNQIEELDEV-NHIGNLPCLETLRLTGNPL-AGSV  415 (490)
T ss_pred             cccchhhHHHh-cccccccHHHHHhhcCCCc-cccc
Confidence            421  122221 1456789999998887663 3344

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=92.25  E-value=0.033  Score=49.12  Aligned_cols=109  Identities=17%  Similarity=0.205  Sum_probs=63.1

Q ss_pred             hhhcccCCeEEEeecCCceEEecccCccCcccccCCCCccEEEEecCCCCCcCccc-ccCCCccEEEEecccccceeccc
Q 026434           54 LAYMENLQELELEYCNLEEMKIDSTDEVKKLFQSGFRSLNTVHVFYCQKAKDLTWL-VFVQNLKKLRIEFCDDVEEIIGV  132 (238)
Q Consensus        54 l~~l~~L~~L~i~~c~l~~i~~~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~-~~l~~L~~L~i~~C~~l~~l~~~  132 (238)
                      ++++++|..|+++++.+.+++.++.         .+..|+.|+|+.- +++.+|-. ..+..|+++..++ .++..+.  
T Consensus       431 l~~l~kLt~L~L~NN~Ln~LP~e~~---------~lv~Lq~LnlS~N-rFr~lP~~~y~lq~lEtllas~-nqi~~vd--  497 (565)
T KOG0472|consen  431 LSQLQKLTFLDLSNNLLNDLPEEMG---------SLVRLQTLNLSFN-RFRMLPECLYELQTLETLLASN-NQIGSVD--  497 (565)
T ss_pred             HHhhhcceeeecccchhhhcchhhh---------hhhhhheeccccc-ccccchHHHhhHHHHHHHHhcc-ccccccC--
Confidence            4556666666666655555544432         3555666666654 45555422 1222233322221 1222221  


Q ss_pred             ccccccccccccccccccccceeeccccccccccCCCCCCCCCccEEeEcCccC
Q 026434          133 DKLRDISEIIGSEHNFFAQLEYLTISWGINLKGVYPNPLPFPKLKKIKVRGCRH  186 (238)
Q Consensus       133 ~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~~~~~~~~L~~L~i~~C~~  186 (238)
                                ...+..+.+|+.|++.+- .+..++...+.+.+|++|.+.|-|-
T Consensus       498 ----------~~~l~nm~nL~tLDL~nN-dlq~IPp~LgnmtnL~hLeL~gNpf  540 (565)
T KOG0472|consen  498 ----------PSGLKNMRNLTTLDLQNN-DLQQIPPILGNMTNLRHLELDGNPF  540 (565)
T ss_pred             ----------hHHhhhhhhcceeccCCC-chhhCChhhccccceeEEEecCCcc
Confidence                      134567788888888643 4777888888899999999998764

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=91.47  E-value=0.042  Score=48.44  Aligned_cols=108  Identities=17%  Similarity=0.130  Sum_probs=55.9

Q ss_pred             cccccCCCcceeEEeeehHHHHhhhcCchhhcceeEEEEeecCCCCCcccchhh-cccCCeEEEeecCCceEEecccCcc
Q 026434            3 ELLGLKHLKVLSWSFGSSLAVQKFLKYPKLVSITQSVGVYQCRSPPFNVFHLAY-MENLQELELEYCNLEEMKIDSTDEV   81 (238)
Q Consensus         3 eL~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~c~~l~~~~~~l~~-l~~L~~L~i~~c~l~~i~~~~~~~~   81 (238)
                      ++..+++|..|++...--..+..-.+.   ...||.|+|+.-+ .+ .++..-. +..++.+-.++..+..+..+     
T Consensus       430 ~l~~l~kLt~L~L~NN~Ln~LP~e~~~---lv~Lq~LnlS~Nr-Fr-~lP~~~y~lq~lEtllas~nqi~~vd~~-----  499 (565)
T KOG0472|consen  430 ELSQLQKLTFLDLSNNLLNDLPEEMGS---LVRLQTLNLSFNR-FR-MLPECLYELQTLETLLASNNQIGSVDPS-----  499 (565)
T ss_pred             HHHhhhcceeeecccchhhhcchhhhh---hhhhheecccccc-cc-cchHHHhhHHHHHHHHhccccccccChH-----
Confidence            456677777777643222222221111   2346777765531 11 2333221 23344443333334433222     


Q ss_pred             CcccccCCCCccEEEEecCCCCCcCc-ccccCCCccEEEEeccc
Q 026434           82 KKLFQSGFRSLNTVHVFYCQKAKDLT-WLVFVQNLKKLRIEFCD  124 (238)
Q Consensus        82 ~~~~~~~l~~L~~L~i~~C~~L~~l~-~~~~l~~L~~L~i~~C~  124 (238)
                         ....+.+|..|++.+- .+..+| .++.+.+|++|++.+-+
T Consensus       500 ---~l~nm~nL~tLDL~nN-dlq~IPp~LgnmtnL~hLeL~gNp  539 (565)
T KOG0472|consen  500 ---GLKNMRNLTTLDLQNN-DLQQIPPILGNMTNLRHLELDGNP  539 (565)
T ss_pred             ---HhhhhhhcceeccCCC-chhhCChhhccccceeEEEecCCc
Confidence               1345777888877664 466665 46788888888887754

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=90.93  E-value=0.33  Score=39.01  Aligned_cols=33  Identities=24%  Similarity=0.198  Sum_probs=14.3

Q ss_pred             CCCccEEEEecC--CCCCcCcccccCCCccEEEEe
Q 026434           89 FRSLNTVHVFYC--QKAKDLTWLVFVQNLKKLRIE  121 (238)
Q Consensus        89 l~~L~~L~i~~C--~~L~~l~~~~~l~~L~~L~i~  121 (238)
                      +++|+.|.+.+-  .++.++.++..+|.|++|.+.
T Consensus        87 ~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll  121 (233)
T KOG1644|consen   87 LPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLL  121 (233)
T ss_pred             ccccceEEecCcchhhhhhcchhccCCccceeeec
Confidence            445555555431  123333344444555554443

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=90.11  E-value=0.0081  Score=50.40  Aligned_cols=53  Identities=25%  Similarity=0.341  Sum_probs=26.0

Q ss_pred             cccCCeEEEeecCCceEEecccCccCcccccCCCCccEEEEecCCCCCcCcccccCCCccEEEE
Q 026434           57 MENLQELELEYCNLEEMKIDSTDEVKKLFQSGFRSLNTVHVFYCQKAKDLTWLVFVQNLKKLRI  120 (238)
Q Consensus        57 l~~L~~L~i~~c~l~~i~~~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~l~~L~~L~i  120 (238)
                      +.+.++|+.++|.+.+|.+-.          .++.|+-|.++ .++++.+.++..+.+|+.|++
T Consensus        18 l~~vkKLNcwg~~L~DIsic~----------kMp~lEVLsLS-vNkIssL~pl~rCtrLkElYL   70 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDISICE----------KMPLLEVLSLS-VNKISSLAPLQRCTRLKELYL   70 (388)
T ss_pred             HHHhhhhcccCCCccHHHHHH----------hcccceeEEee-ccccccchhHHHHHHHHHHHH
Confidence            446666777777655553311          24445544443 224444444444444444444

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=90.00  E-value=0.099  Score=46.12  Aligned_cols=12  Identities=17%  Similarity=0.631  Sum_probs=6.6

Q ss_pred             CCCCccEEeEcC
Q 026434          172 PFPKLKKIKVRG  183 (238)
Q Consensus       172 ~~~~L~~L~i~~  183 (238)
                      .+.+|+.|++.+
T Consensus       275 ~~~~l~~L~~s~  286 (394)
T COG4886         275 SLTNLRELDLSG  286 (394)
T ss_pred             ccCccCEEeccC
Confidence            445556665554

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=89.59  E-value=0.15  Score=42.28  Aligned_cols=35  Identities=31%  Similarity=0.309  Sum_probs=18.0

Q ss_pred             CCCccEEEEecCCCCCc---CcccccCCCccEEEEeccc
Q 026434           89 FRSLNTVHVFYCQKAKD---LTWLVFVQNLKKLRIEFCD  124 (238)
Q Consensus        89 l~~L~~L~i~~C~~L~~---l~~~~~l~~L~~L~i~~C~  124 (238)
                      +|+|+++++++- +++.   +.++..+++|..|.+.+|+
T Consensus        90 ~P~l~~l~ls~N-ki~~lstl~pl~~l~nL~~Ldl~n~~  127 (260)
T KOG2739|consen   90 APNLKVLNLSGN-KIKDLSTLRPLKELENLKSLDLFNCS  127 (260)
T ss_pred             CCceeEEeecCC-ccccccccchhhhhcchhhhhcccCC
Confidence            366666665543 3333   2344455555566655554

>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily

Probab=89.56  E-value=0.23  Score=25.73  Aligned_cols=17  Identities=24%  Similarity=0.841  Sum_probs=13.6

Q ss_pred             CCCccEEeEcCccCCCC
Q 026434          173 FPKLKKIKVRGCRHLKK  189 (238)
Q Consensus       173 ~~~L~~L~i~~C~~L~~  189 (238)
                      +++|+.|++++|++++.
T Consensus         1 c~~L~~L~l~~C~~itD   17 (26)
T smart00367        1 CPNLRELDLSGCTNITD   17 (26)
T ss_pred             CCCCCEeCCCCCCCcCH
Confidence            47888888888888764

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=89.39  E-value=0.16  Score=45.37  Aligned_cols=78  Identities=18%  Similarity=0.256  Sum_probs=50.5

Q ss_pred             cceeEEEEeecCCCCCcccc-hhhcccCCeEEEeecCCceEEecccCccCcccccCCCCccEEEEecCCCCCcCcccccC
Q 026434           34 SITQSVGVYQCRSPPFNVFH-LAYMENLQELELEYCNLEEMKIDSTDEVKKLFQSGFRSLNTVHVFYCQKAKDLTWLVFV  112 (238)
Q Consensus        34 ~~L~~L~l~~c~~l~~~~~~-l~~l~~L~~L~i~~c~l~~i~~~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~l  112 (238)
                      .++..|.+.+- .+. .+.. +..+++|++|+++++.+..+.          +...++.|+.|++.+. .+..+..+..+
T Consensus        95 ~~l~~l~l~~n-~i~-~i~~~l~~~~~L~~L~ls~N~I~~i~----------~l~~l~~L~~L~l~~N-~i~~~~~~~~l  161 (414)
T KOG0531|consen   95 KSLEALDLYDN-KIE-KIENLLSSLVNLQVLDLSFNKITKLE----------GLSTLTLLKELNLSGN-LISDISGLESL  161 (414)
T ss_pred             cceeeeecccc-chh-hcccchhhhhcchheecccccccccc----------chhhccchhhheeccC-cchhccCCccc
Confidence            44555554432 111 3455 677888899988888755442          2345666888888776 57777666667


Q ss_pred             CCccEEEEeccc
Q 026434          113 QNLKKLRIEFCD  124 (238)
Q Consensus       113 ~~L~~L~i~~C~  124 (238)
                      ++|+.+++.++.
T Consensus       162 ~~L~~l~l~~n~  173 (414)
T KOG0531|consen  162 KSLKLLDLSYNR  173 (414)
T ss_pred             hhhhcccCCcch
Confidence            888888777753

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=88.12  E-value=0.2  Score=24.89  Aligned_cols=18  Identities=22%  Similarity=0.523  Sum_probs=13.8

Q ss_pred             CccEEeEcCccCCCCCCCC
Q 026434          175 KLKKIKVRGCRHLKKLPLN  193 (238)
Q Consensus       175 ~L~~L~i~~C~~L~~lp~~  193 (238)
                      +|+.|++++| +++.+|..
T Consensus         1 ~L~~Ldls~n-~l~~ip~~   18 (22)
T PF00560_consen    1 NLEYLDLSGN-NLTSIPSS   18 (22)
T ss_dssp             TESEEEETSS-EESEEGTT
T ss_pred             CccEEECCCC-cCEeCChh
Confidence            4788888888 77777754

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=86.77  E-value=0.51  Score=41.61  Aligned_cols=60  Identities=23%  Similarity=0.335  Sum_probs=28.5

Q ss_pred             chhhcccCCeEEEeecCCceEEecccCccCcccccCCCCccEEEEecCCCCCcCcccc-cCCCccEEEEec
Q 026434           53 HLAYMENLQELELEYCNLEEMKIDSTDEVKKLFQSGFRSLNTVHVFYCQKAKDLTWLV-FVQNLKKLRIEF  122 (238)
Q Consensus        53 ~l~~l~~L~~L~i~~c~l~~i~~~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~-~l~~L~~L~i~~  122 (238)
                      .+..+++|+.|.+.++++..+....         ...++|+.|++++. ++.+++... .+..|++|.+.+
T Consensus       158 ~~~~l~~L~~L~l~~N~l~~l~~~~---------~~~~~L~~L~ls~N-~i~~l~~~~~~~~~L~~l~~~~  218 (394)
T COG4886         158 PLRNLPNLKNLDLSFNDLSDLPKLL---------SNLSNLNNLDLSGN-KISDLPPEIELLSALEELDLSN  218 (394)
T ss_pred             hhhccccccccccCCchhhhhhhhh---------hhhhhhhheeccCC-ccccCchhhhhhhhhhhhhhcC
Confidence            4556666666666666643332110         13445555555554 444444332 222355554443

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=86.57  E-value=0.31  Score=40.45  Aligned_cols=131  Identities=14%  Similarity=0.037  Sum_probs=75.4

Q ss_pred             ceeEEEEeecCCCCCcccch-hhcccCCeEEEeecCCceEEecccCccCcccccCCCCccEEEEecCCCCCc---Cc-cc
Q 026434           35 ITQSVGVYQCRSPPFNVFHL-AYMENLQELELEYCNLEEMKIDSTDEVKKLFQSGFRSLNTVHVFYCQKAKD---LT-WL  109 (238)
Q Consensus        35 ~L~~L~l~~c~~l~~~~~~l-~~l~~L~~L~i~~c~l~~i~~~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~---l~-~~  109 (238)
                      .++.+.+.+|..-...+..+ -.+.+|+.|.+.++.+.++          .....+++|+.|.++.- ....   +. ..
T Consensus        19 ~v~~l~lD~~~s~~g~~~gl~d~~~~le~ls~~n~gltt~----------~~~P~Lp~LkkL~lsdn-~~~~~~~l~vl~   87 (260)
T KOG2739|consen   19 QVDELFLDNARSGAGKLGGLTDEFVELELLSVINVGLTTL----------TNFPKLPKLKKLELSDN-YRRVSGGLEVLA   87 (260)
T ss_pred             hhhhhhcchhhhcCCCcccccccccchhhhhhhccceeec----------ccCCCcchhhhhcccCC-cccccccceehh
Confidence            45566666665433222222 3456788888888874433          12245788999987643 1211   21 23


Q ss_pred             ccCCCccEEEEecccccceecccccccccccccccccccccccceeecccccccc--ccCC-CCCCCCCccEEeEcCccC
Q 026434          110 VFVQNLKKLRIEFCDDVEEIIGVDKLRDISEIIGSEHNFFAQLEYLTISWGINLK--GVYP-NPLPFPKLKKIKVRGCRH  186 (238)
Q Consensus       110 ~~l~~L~~L~i~~C~~l~~l~~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~--~i~~-~~~~~~~L~~L~i~~C~~  186 (238)
                      ..+|+|++|++++- ++..+ ..        +  .+...+++|..|.+.+|+-..  .-.. ....+|+|..|+-.++..
T Consensus        88 e~~P~l~~l~ls~N-ki~~l-st--------l--~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv~~  155 (260)
T KOG2739|consen   88 EKAPNLKVLNLSGN-KIKDL-ST--------L--RPLKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDVDG  155 (260)
T ss_pred             hhCCceeEEeecCC-ccccc-cc--------c--chhhhhcchhhhhcccCCccccccHHHHHHHHhhhhccccccccCC
Confidence            45699999988764 33322 10        0  344566778888888776544  1100 133478888888877776


Q ss_pred             CC
Q 026434          187 LK  188 (238)
Q Consensus       187 L~  188 (238)
                      -.
T Consensus       156 ~E  157 (260)
T KOG2739|consen  156 EE  157 (260)
T ss_pred             cc
Confidence            44

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=83.31  E-value=0.67  Score=41.40  Aligned_cols=60  Identities=22%  Similarity=0.283  Sum_probs=44.6

Q ss_pred             hhhcccCCeEEEeecCCceEEecccCccCcccccCCCCccEEEEecCCCCCcCcccccCCCccEEEEecc
Q 026434           54 LAYMENLQELELEYCNLEEMKIDSTDEVKKLFQSGFRSLNTVHVFYCQKAKDLTWLVFVQNLKKLRIEFC  123 (238)
Q Consensus        54 l~~l~~L~~L~i~~c~l~~i~~~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~l~~L~~L~i~~C  123 (238)
                      +..+++|+.|.+.+..++.+..         ...++++|+.|++++- .++++..+..++.|+.|++.+.
T Consensus        91 l~~~~~l~~l~l~~n~i~~i~~---------~l~~~~~L~~L~ls~N-~I~~i~~l~~l~~L~~L~l~~N  150 (414)
T KOG0531|consen   91 LSKLKSLEALDLYDNKIEKIEN---------LLSSLVNLQVLDLSFN-KITKLEGLSTLTLLKELNLSGN  150 (414)
T ss_pred             cccccceeeeeccccchhhccc---------chhhhhcchheecccc-ccccccchhhccchhhheeccC
Confidence            5667788888887777544421         0356899999999874 6888888888888999988875

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=82.40  E-value=9.3  Score=27.37  Aligned_cols=10  Identities=20%  Similarity=0.252  Sum_probs=4.2

Q ss_pred             CCccEEEEec
Q 026434           90 RSLNTVHVFY   99 (238)
Q Consensus        90 ~~L~~L~i~~   99 (238)
                      .+|+.+.+.+
T Consensus        35 ~~l~~i~~~~   44 (129)
T PF13306_consen   35 TSLKSINFPN   44 (129)
T ss_dssp             TT-SEEEESS
T ss_pred             cccccccccc
Confidence            3455555443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	238
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.1 bits (98), Expect = 1e-04
 Identities = 33/197 (16%), Positives = 71/197 (36%), Gaps = 37/197 (18%)

Query: 42  YQCRSPPFNVFHLAYMENLQELELEYCNLEEMK-IDSTDEVKKLFQSGFRSLNTVHVFYC 100
           YQ +    +VF  A+++N    +++    +  K I S +E+  +  S      T+ +F+ 
Sbjct: 16  YQYKDI-LSVFEDAFVDNFDCKDVQ----DMPKSILSKEEIDHIIMSKDAVSGTLRLFWT 70

Query: 101 QKAK-DLTWLVFVQNLKKLRIEFCDDVEEIIGVDKLRDISEIIGSEHNFFAQLEYLTISW 159
             +K +     FV+ + ++  +F         +  ++   E           +E     +
Sbjct: 71  LLSKQEEMVQKFVEEVLRINYKFL--------MSPIKT--EQRQPSMMTRMYIEQRDRLY 120

Query: 160 GINLKGVYPNPLPFPKLKKI-KVRGCRHLKKLPLNSSSAKERRVVIE---GSKKWW---E 212
             N   V+       +L+   K+R  + L +L         + V+I+   GS K W   +
Sbjct: 121 NDN--QVFA-KYNVSRLQPYLKLR--QALLEL------RPAKNVLIDGVLGSGKTWVALD 169

Query: 213 ELQWEDQATQNAFSSGV 229
                    Q      +
Sbjct: 170 VCL--SYKVQCKMDFKI 184

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	238
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.49
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.38
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.22
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.19
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.16
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.12
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.07
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.07
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.07
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.06
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.06
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.06
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.05
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.04
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.03
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.03
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.01
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.0
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.0
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	98.98
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	98.95
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	98.93
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	98.92
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	98.9
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	98.9
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	98.89
3m19_A	251	Variable lymphocyte receptor A diversity region; a	98.88
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	98.88
1o6v_A	466	Internalin A; bacterial infection, extracellular r	98.87
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	98.87
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.86
1o6v_A	466	Internalin A; bacterial infection, extracellular r	98.86
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	98.86
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	98.82
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	98.81
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	98.8
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	98.79
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	98.78
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	98.76
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	98.76
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	98.75
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	98.75
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	98.75
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	98.73
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	98.72
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	98.7
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	98.7
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	98.7
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	98.69
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	98.69
3m19_A	251	Variable lymphocyte receptor A diversity region; a	98.69
3e6j_A	229	Variable lymphocyte receptor diversity region; var	98.68
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	98.68
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	98.67
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	98.66
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	98.66
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	98.65
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	98.65
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	98.65
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	98.64
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	98.64
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	98.62
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.62
3e6j_A	229	Variable lymphocyte receptor diversity region; var	98.61
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	98.61
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	98.6
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.59
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	98.59
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	98.58
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	98.58
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	98.58
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	98.57
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	98.56
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	98.56
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	98.55
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	98.55
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	98.55
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	98.54
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	98.54
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	98.52
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	98.52
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	98.51
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	98.51
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	98.5
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	98.49
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	98.49
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	98.49
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.49
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	98.48
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	98.47
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	98.47
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	98.47
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.47
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	98.46
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.45
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	98.44
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	98.42
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.4
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	98.38
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	98.37
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	98.32
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	98.32
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	98.32
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	98.3
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	98.29
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	98.28
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	98.28
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	98.28
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	98.28
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	98.27
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	98.26
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	98.26
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	98.25
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	98.24
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	98.17
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	98.17
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	98.17
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	98.16
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	98.12
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	98.08
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	98.07
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	98.04
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	98.02
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	98.02
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	98.01
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	98.0
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	98.0
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	97.97
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	97.95
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	97.92
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	97.88
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	97.86
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	97.7
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	97.65
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	97.63
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	97.63
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	97.63
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	97.58
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	97.57
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	97.45
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	97.36
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	97.36
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	97.31
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	97.19
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	97.11
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	97.01
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	95.99
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	95.47
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	94.97
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	94.72
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	92.86
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	92.6
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	90.62
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	90.45

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.49  E-value=4.7e-13  Score=114.19  Aligned_cols=208  Identities=16%  Similarity=0.154  Sum_probs=117.7

Q ss_pred             cccccCCCcceeEEeeehHHHHhhhcCchhhcceeEEEEeecCCCCCcccchhhcccCCeEEEeecC-CceEEecccCcc
Q 026434            3 ELLGLKHLKVLSWSFGSSLAVQKFLKYPKLVSITQSVGVYQCRSPPFNVFHLAYMENLQELELEYCN-LEEMKIDSTDEV   81 (238)
Q Consensus         3 eL~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~c~~l~~~~~~l~~l~~L~~L~i~~c~-l~~i~~~~~~~~   81 (238)
                      ++..+.+|+.|++......   .+.....-.++|+.|++.++.- ......+.++++|+.|++++|. +..++.......
T Consensus        99 ~l~~l~~L~~L~L~~n~l~---~lp~~~~~l~~L~~L~Ls~n~l-~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~  174 (328)
T 4fcg_A           99 QAFRLSHLQHMTIDAAGLM---ELPDTMQQFAGLETLTLARNPL-RALPASIASLNRLRELSIRACPELTELPEPLASTD  174 (328)
T ss_dssp             CGGGGTTCSEEEEESSCCC---CCCSCGGGGTTCSEEEEESCCC-CCCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC
T ss_pred             hhhhCCCCCEEECCCCCcc---chhHHHhccCCCCEEECCCCcc-ccCcHHHhcCcCCCEEECCCCCCccccChhHhhcc
Confidence            3566788888888643322   2222223346788888888742 2212256778888888888887 655432111000


Q ss_pred             CcccccCCCCccEEEEecCCCCCcCc-ccccCCCccEEEEecccccceecccccc-----------cccccccccccccc
Q 026434           82 KKLFQSGFRSLNTVHVFYCQKAKDLT-WLVFVQNLKKLRIEFCDDVEEIIGVDKL-----------RDISEIIGSEHNFF  149 (238)
Q Consensus        82 ~~~~~~~l~~L~~L~i~~C~~L~~l~-~~~~l~~L~~L~i~~C~~l~~l~~~~~~-----------~~~~~~~~~~~~~~  149 (238)
                      .......+++|+.|+++++ +++.++ .+..+++|++|++.+|. +..++..-..           ....+.....+..+
T Consensus       175 ~~~~~~~l~~L~~L~L~~n-~l~~lp~~l~~l~~L~~L~L~~N~-l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l  252 (328)
T 4fcg_A          175 ASGEHQGLVNLQSLRLEWT-GIRSLPASIANLQNLKSLKIRNSP-LSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGR  252 (328)
T ss_dssp             -CCCEEESTTCCEEEEEEE-CCCCCCGGGGGCTTCCEEEEESSC-CCCCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCC
T ss_pred             chhhhccCCCCCEEECcCC-CcCcchHhhcCCCCCCEEEccCCC-CCcCchhhccCCCCCEEECcCCcchhhhHHHhcCC
Confidence            0000112445555555554 344433 23444555555554442 2222110000           00000001355678


Q ss_pred             cccceeeccccccccccCCCCCCCCCccEEeEcCccCCCCCCCCCCCCCCcceEEEchhhhhhhcccC
Q 026434          150 AQLEYLTISWGINLKGVYPNPLPFPKLKKIKVRGCRHLKKLPLNSSSAKERRVVIEGSKKWWEELQWE  217 (238)
Q Consensus       150 p~L~~L~L~~~~~L~~i~~~~~~~~~L~~L~i~~C~~L~~lp~~~~~~~~~L~~~~~~~~w~~~~~~~  217 (238)
                      ++|++|++.++..+..++.....+++|+.|++++|+.+..+|..-.. .++|+.+.....+...+.+.
T Consensus       253 ~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~-L~~L~~l~l~~~~~~~l~~~  319 (328)
T 4fcg_A          253 APLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQ-LPANCIILVPPHLQAQLDQH  319 (328)
T ss_dssp             CCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGG-SCTTCEEECCGGGSCC----
T ss_pred             CCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhh-ccCceEEeCCHHHHHHHhhh
Confidence            99999999999888888877778999999999999999999965443 36788887776666555544

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.38  E-value=1.2e-11  Score=105.51  Aligned_cols=182  Identities=16%  Similarity=0.152  Sum_probs=125.7

Q ss_pred             cCCCcceeEEeeehHHHHhhhcCchhhcceeEEEEeecCCCCCccc-chhhcccCCeEEEeecCCceEEecccCccCccc
Q 026434            7 LKHLKVLSWSFGSSLAVQKFLKYPKLVSITQSVGVYQCRSPPFNVF-HLAYMENLQELELEYCNLEEMKIDSTDEVKKLF   85 (238)
Q Consensus         7 L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~c~~l~~~~~-~l~~l~~L~~L~i~~c~l~~i~~~~~~~~~~~~   85 (238)
                      ..+++.|++......   .+.....-.++|+.|++.++.- .. ++ .+.++++|++|++++|.+..++         ..
T Consensus        80 ~~~l~~L~L~~n~l~---~lp~~l~~l~~L~~L~L~~n~l-~~-lp~~~~~l~~L~~L~Ls~n~l~~lp---------~~  145 (328)
T 4fcg_A           80 QPGRVALELRSVPLP---QFPDQAFRLSHLQHMTIDAAGL-ME-LPDTMQQFAGLETLTLARNPLRALP---------AS  145 (328)
T ss_dssp             STTCCEEEEESSCCS---SCCSCGGGGTTCSEEEEESSCC-CC-CCSCGGGGTTCSEEEEESCCCCCCC---------GG
T ss_pred             ccceeEEEccCCCch---hcChhhhhCCCCCEEECCCCCc-cc-hhHHHhccCCCCEEECCCCccccCc---------HH
Confidence            467888888644332   3333233357899999998853 22 33 5788999999999999855552         23


Q ss_pred             ccCCCCccEEEEecCCCCCcCcc-c---------ccCCCccEEEEecccccceecccccc-----------ccccccccc
Q 026434           86 QSGFRSLNTVHVFYCQKAKDLTW-L---------VFVQNLKKLRIEFCDDVEEIIGVDKL-----------RDISEIIGS  144 (238)
Q Consensus        86 ~~~l~~L~~L~i~~C~~L~~l~~-~---------~~l~~L~~L~i~~C~~l~~l~~~~~~-----------~~~~~~~~~  144 (238)
                      ...+++|+.|++++|..+..++. +         ..+++|++|++.++ .+..++..-..           ....+.+ .
T Consensus       146 l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n-~l~~lp~~l~~l~~L~~L~L~~N~l~~l~-~  223 (328)
T 4fcg_A          146 IASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWT-GIRSLPASIANLQNLKSLKIRNSPLSALG-P  223 (328)
T ss_dssp             GGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEE-CCCCCCGGGGGCTTCCEEEEESSCCCCCC-G
T ss_pred             HhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCC-CcCcchHhhcCCCCCCEEEccCCCCCcCc-h
Confidence            45689999999999988877763 2         24999999999987 44444221000           0011121 3


Q ss_pred             ccccccccceeeccccccccccCCCCCCCCCccEEeEcCccCCCCCCCCCCCCCCcceEEE
Q 026434          145 EHNFFAQLEYLTISWGINLKGVYPNPLPFPKLKKIKVRGCRHLKKLPLNSSSAKERRVVIE  205 (238)
Q Consensus       145 ~~~~~p~L~~L~L~~~~~L~~i~~~~~~~~~L~~L~i~~C~~L~~lp~~~~~~~~~L~~~~  205 (238)
                      .+..+++|++|+++++.....++.....+++|+.|++.+|..+..+|..-.. ..+|+.+.
T Consensus       224 ~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~-l~~L~~L~  283 (328)
T 4fcg_A          224 AIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHR-LTQLEKLD  283 (328)
T ss_dssp             GGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGG-CTTCCEEE
T ss_pred             hhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhc-CCCCCEEe
Confidence            4567889999999988888877776777899999999999999988865322 24555553

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.22  E-value=1.5e-10  Score=93.77  Aligned_cols=150  Identities=11%  Similarity=0.040  Sum_probs=76.8

Q ss_pred             cceeEEEEeecCCCCC-cccchhhcccCCeEEEeecC-CceEEecccCccCcccccCCCCccEEEEecCCCCCcCccccc
Q 026434           34 SITQSVGVYQCRSPPF-NVFHLAYMENLQELELEYCN-LEEMKIDSTDEVKKLFQSGFRSLNTVHVFYCQKAKDLTWLVF  111 (238)
Q Consensus        34 ~~L~~L~l~~c~~l~~-~~~~l~~l~~L~~L~i~~c~-l~~i~~~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~  111 (238)
                      ++|+.|++.++..+.. ....+.++++|++|++++|. ++.+..+.        ...+++|+.|+++++ +++.++.+..
T Consensus        55 ~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~--------f~~l~~L~~L~l~~n-~l~~lp~~~~  125 (239)
T 2xwt_C           55 PNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDA--------LKELPLLKFLGIFNT-GLKMFPDLTK  125 (239)
T ss_dssp             TTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTS--------EECCTTCCEEEEEEE-CCCSCCCCTT
T ss_pred             CCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHH--------hCCCCCCCEEeCCCC-CCcccccccc
Confidence            4566666666543333 12234555666666666644 55442111        123556666666665 3555554445


Q ss_pred             CCCcc---EEEEecccccceecccccccccccccccccccccccc-eeeccccccccccCCCCCCCCCccEEeEcCccCC
Q 026434          112 VQNLK---KLRIEFCDDVEEIIGVDKLRDISEIIGSEHNFFAQLE-YLTISWGINLKGVYPNPLPFPKLKKIKVRGCRHL  187 (238)
Q Consensus       112 l~~L~---~L~i~~C~~l~~l~~~~~~~~~~~~~~~~~~~~p~L~-~L~L~~~~~L~~i~~~~~~~~~L~~L~i~~C~~L  187 (238)
                      +++|+   +|++.++..+..+..            .....+++|+ .|++.+. +++.++......++|+.|++.+++++
T Consensus       126 l~~L~~L~~L~l~~N~~l~~i~~------------~~~~~l~~L~~~L~l~~n-~l~~i~~~~~~~~~L~~L~L~~n~~l  192 (239)
T 2xwt_C          126 VYSTDIFFILEITDNPYMTSIPV------------NAFQGLCNETLTLKLYNN-GFTSVQGYAFNGTKLDAVYLNKNKYL  192 (239)
T ss_dssp             CCBCCSEEEEEEESCTTCCEECT------------TTTTTTBSSEEEEECCSC-CCCEECTTTTTTCEEEEEECTTCTTC
T ss_pred             ccccccccEEECCCCcchhhcCc------------ccccchhcceeEEEcCCC-CCcccCHhhcCCCCCCEEEcCCCCCc
Confidence            55555   666666544544421            2234456666 6666543 34455543333356666666666666


Q ss_pred             CCCCCCCCCCC-CcceEEE
Q 026434          188 KKLPLNSSSAK-ERRVVIE  205 (238)
Q Consensus       188 ~~lp~~~~~~~-~~L~~~~  205 (238)
                      +.+|...-... .+|+.+.
T Consensus       193 ~~i~~~~~~~l~~~L~~L~  211 (239)
T 2xwt_C          193 TVIDKDAFGGVYSGPSLLD  211 (239)
T ss_dssp             CEECTTTTTTCSBCCSEEE
T ss_pred             ccCCHHHhhccccCCcEEE
Confidence            66654433333 4454443

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.19  E-value=5.5e-11  Score=93.80  Aligned_cols=130  Identities=12%  Similarity=0.197  Sum_probs=78.4

Q ss_pred             cceeEEEEeecCCCCCcccchhhcccCCeEEEeecCCceEEecccCccCcccccCCCCccEEEEecCCCCCc--Cccccc
Q 026434           34 SITQSVGVYQCRSPPFNVFHLAYMENLQELELEYCNLEEMKIDSTDEVKKLFQSGFRSLNTVHVFYCQKAKD--LTWLVF  111 (238)
Q Consensus        34 ~~L~~L~l~~c~~l~~~~~~l~~l~~L~~L~i~~c~l~~i~~~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~--l~~~~~  111 (238)
                      ++++.|++.++. +. .++.+..+++|+.|++++|.++.+          +....+++|+.|+++++ +++.  ...+..
T Consensus        44 ~~L~~L~l~~n~-i~-~l~~l~~l~~L~~L~l~~n~~~~~----------~~l~~l~~L~~L~l~~n-~l~~~~~~~l~~  110 (197)
T 4ezg_A           44 NSLTYITLANIN-VT-DLTGIEYAHNIKDLTINNIHATNY----------NPISGLSNLERLRIMGK-DVTSDKIPNLSG  110 (197)
T ss_dssp             HTCCEEEEESSC-CS-CCTTGGGCTTCSEEEEESCCCSCC----------GGGTTCTTCCEEEEECT-TCBGGGSCCCTT
T ss_pred             CCccEEeccCCC-cc-ChHHHhcCCCCCEEEccCCCCCcc----------hhhhcCCCCCEEEeECC-ccCcccChhhcC
Confidence            567777777653 22 244566777777777777763322          12345677777777776 4554  344566


Q ss_pred             CCCccEEEEecccccceecccccccccccccccccccccccceeeccccccccccCCCCCCCCCccEEeEcCccCCCCCC
Q 026434          112 VQNLKKLRIEFCDDVEEIIGVDKLRDISEIIGSEHNFFAQLEYLTISWGINLKGVYPNPLPFPKLKKIKVRGCRHLKKLP  191 (238)
Q Consensus       112 l~~L~~L~i~~C~~l~~l~~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~~~~~~~~L~~L~i~~C~~L~~lp  191 (238)
                      +++|++|++++|. +.....            ..+..+++|++|+++++..++.++ ....+++|+.|++++|. ++.+|
T Consensus       111 l~~L~~L~Ls~n~-i~~~~~------------~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~-i~~~~  175 (197)
T 4ezg_A          111 LTSLTLLDISHSA-HDDSIL------------TKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDG-VHDYR  175 (197)
T ss_dssp             CTTCCEEECCSSB-CBGGGH------------HHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBC-CCCCT
T ss_pred             CCCCCEEEecCCc-cCcHhH------------HHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCC-CcChH
Confidence            7777777777763 221100            234456777777777766566554 34456777777777764 45554

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.16  E-value=1.5e-10  Score=95.90  Aligned_cols=158  Identities=15%  Similarity=0.152  Sum_probs=83.3

Q ss_pred             cccCCCcceeEEeeehHHHHhhhcCchhhcceeEEEEeecCCCCCcccchhhcccCCeEEEeecCCceEEecccCccCcc
Q 026434            5 LGLKHLKVLSWSFGSSLAVQKFLKYPKLVSITQSVGVYQCRSPPFNVFHLAYMENLQELELEYCNLEEMKIDSTDEVKKL   84 (238)
Q Consensus         5 ~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~c~~l~~~~~~l~~l~~L~~L~i~~c~l~~i~~~~~~~~~~~   84 (238)
                      ..+.+|+.|.+.......+..+    ...++|+.|++.++. +. .++.+.++++|++|++++|.+..+....       
T Consensus        38 ~~l~~L~~L~l~~~~i~~~~~l----~~l~~L~~L~l~~n~-l~-~~~~l~~l~~L~~L~L~~n~l~~~~~~~-------  104 (272)
T 3rfs_A           38 NELNSIDQIIANNSDIKSVQGI----QYLPNVRYLALGGNK-LH-DISALKELTNLTYLILTGNQLQSLPNGV-------  104 (272)
T ss_dssp             HHHTTCCEEECTTSCCCCCTTG----GGCTTCCEEECTTSC-CC-CCGGGTTCTTCCEEECTTSCCCCCCTTT-------
T ss_pred             ccccceeeeeeCCCCccccccc----ccCCCCcEEECCCCC-CC-CchhhcCCCCCCEEECCCCccCccChhH-------
Confidence            3445566665543222222222    123567777777664 22 2445666777777777777644332111       


Q ss_pred             cccCCCCccEEEEecCCCCCcCcc--cccCCCccEEEEecccccceecccccccccccccccccccccccceeecccccc
Q 026434           85 FQSGFRSLNTVHVFYCQKAKDLTW--LVFVQNLKKLRIEFCDDVEEIIGVDKLRDISEIIGSEHNFFAQLEYLTISWGIN  162 (238)
Q Consensus        85 ~~~~l~~L~~L~i~~C~~L~~l~~--~~~l~~L~~L~i~~C~~l~~l~~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~  162 (238)
                       ...+++|+.|+++++ +++.++.  +..+++|++|++.+| .+..+..            .....+++|+.|++.++ +
T Consensus       105 -~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~------------~~~~~l~~L~~L~l~~n-~  168 (272)
T 3rfs_A          105 -FDKLTNLKELVLVEN-QLQSLPDGVFDKLTNLTYLNLAHN-QLQSLPK------------GVFDKLTNLTELDLSYN-Q  168 (272)
T ss_dssp             -TTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCT------------TTTTTCTTCCEEECCSS-C
T ss_pred             -hcCCcCCCEEECCCC-cCCccCHHHhccCCCCCEEECCCC-ccCccCH------------HHhccCccCCEEECCCC-C
Confidence             234667777777666 4555543  456677777777666 3333321            12344566666666655 3


Q ss_pred             ccccCCCC-CCCCCccEEeEcCccCCCCCCC
Q 026434          163 LKGVYPNP-LPFPKLKKIKVRGCRHLKKLPL  192 (238)
Q Consensus       163 L~~i~~~~-~~~~~L~~L~i~~C~~L~~lp~  192 (238)
                      ++++.... ..+++|+.|+++++. ++.+|.
T Consensus       169 l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~  198 (272)
T 3rfs_A          169 LQSLPEGVFDKLTQLKDLRLYQNQ-LKSVPD  198 (272)
T ss_dssp             CCCCCTTTTTTCTTCCEEECCSSC-CSCCCT
T ss_pred             cCccCHHHhcCCccCCEEECCCCc-CCccCH
Confidence            44444322 345666666666653 444443

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.12  E-value=2.8e-10  Score=96.03  Aligned_cols=35  Identities=20%  Similarity=0.227  Sum_probs=18.0

Q ss_pred             CCCCccEEEEecCCCCCcCcccccCCCccEEEEecc
Q 026434           88 GFRSLNTVHVFYCQKAKDLTWLVFVQNLKKLRIEFC  123 (238)
Q Consensus        88 ~l~~L~~L~i~~C~~L~~l~~~~~l~~L~~L~i~~C  123 (238)
                      .+++|+.|+++++ +++.++.+..+++|++|++++|
T Consensus       127 ~l~~L~~L~l~~n-~l~~~~~l~~l~~L~~L~l~~n  161 (308)
T 1h6u_A          127 GLSNLQVLYLDLN-QITNISPLAGLTNLQYLSIGNA  161 (308)
T ss_dssp             TCTTCCEEECCSS-CCCCCGGGGGCTTCCEEECCSS
T ss_pred             CCCCCCEEECCCC-ccCcCccccCCCCccEEEccCC
Confidence            4455555555554 3444444455555555555554

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.07  E-value=8.8e-10  Score=97.62  Aligned_cols=188  Identities=16%  Similarity=0.157  Sum_probs=100.5

Q ss_pred             cccccCCCcceeEEeeehHHHHhhhcCchhhcceeEEEEeecCCCCC-cccchhhcccCCeEEEeecCCceEEecccCcc
Q 026434            3 ELLGLKHLKVLSWSFGSSLAVQKFLKYPKLVSITQSVGVYQCRSPPF-NVFHLAYMENLQELELEYCNLEEMKIDSTDEV   81 (238)
Q Consensus         3 eL~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~c~~l~~-~~~~l~~l~~L~~L~i~~c~l~~i~~~~~~~~   81 (238)
                      .+.++.+|+.|++.......+.  .....-.++|+.|++.++. +.. ....+..+++|++|+++++.++.+....    
T Consensus        94 ~~~~l~~L~~L~Ls~n~i~~~~--~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~----  166 (452)
T 3zyi_A           94 TFRHLHHLEVLQLGRNSIRQIE--VGAFNGLASLNTLELFDNW-LTVIPSGAFEYLSKLRELWLRNNPIESIPSYA----  166 (452)
T ss_dssp             TTTTCTTCCEEECCSSCCCEEC--TTTTTTCTTCCEEECCSSC-CSBCCTTTSSSCTTCCEEECCSCCCCEECTTT----
T ss_pred             HcCCCCCCCEEECCCCccCCcC--hhhccCcccCCEEECCCCc-CCccChhhhcccCCCCEEECCCCCcceeCHhH----
Confidence            4667888888887533222111  0111123578888888764 232 2223566778888888877755443211    


Q ss_pred             CcccccCCCCccEEEEecCCCCCcCcc--cccCCCccEEEEecccccceecccccc----------cccccccccccccc
Q 026434           82 KKLFQSGFRSLNTVHVFYCQKAKDLTW--LVFVQNLKKLRIEFCDDVEEIIGVDKL----------RDISEIIGSEHNFF  149 (238)
Q Consensus        82 ~~~~~~~l~~L~~L~i~~C~~L~~l~~--~~~l~~L~~L~i~~C~~l~~l~~~~~~----------~~~~~~~~~~~~~~  149 (238)
                          ...+++|+.|++++|..+..++.  +..+++|++|++.++ ++..+......          ....+.....+..+
T Consensus       167 ----~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l  241 (452)
T 3zyi_A          167 ----FNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMC-NIKDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGL  241 (452)
T ss_dssp             ----TTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTS-CCSSCCCCTTCTTCCEEECTTSCCSEECGGGGTTC
T ss_pred             ----HhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCC-cccccccccccccccEEECcCCcCcccCcccccCc
Confidence                12355555555555555544432  334455555555444 22222100000          00000111345667


Q ss_pred             cccceeeccccccccccCC-CCCCCCCccEEeEcCccCCCCCCCCCCCCCCcceEE
Q 026434          150 AQLEYLTISWGINLKGVYP-NPLPFPKLKKIKVRGCRHLKKLPLNSSSAKERRVVI  204 (238)
Q Consensus       150 p~L~~L~L~~~~~L~~i~~-~~~~~~~L~~L~i~~C~~L~~lp~~~~~~~~~L~~~  204 (238)
                      ++|+.|++.++ .++.+.. ....+++|+.|+++++ +++.+|........+|+.+
T Consensus       242 ~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L  295 (452)
T 3zyi_A          242 SSLKKLWVMNS-QVSLIERNAFDGLASLVELNLAHN-NLSSLPHDLFTPLRYLVEL  295 (452)
T ss_dssp             TTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSS-CCSCCCTTSSTTCTTCCEE
T ss_pred             cCCCEEEeCCC-cCceECHHHhcCCCCCCEEECCCC-cCCccChHHhccccCCCEE
Confidence            88888888765 3555543 3456799999999998 7788886544333445443

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.07  E-value=4.6e-10  Score=93.24  Aligned_cols=89  Identities=15%  Similarity=0.089  Sum_probs=55.1

Q ss_pred             CCCCccEEEEecCCCCCcCcc--cccCCCccEEEEecccccceecccccccccccccccccccccccceeeccccccccc
Q 026434           88 GFRSLNTVHVFYCQKAKDLTW--LVFVQNLKKLRIEFCDDVEEIIGVDKLRDISEIIGSEHNFFAQLEYLTISWGINLKG  165 (238)
Q Consensus        88 ~l~~L~~L~i~~C~~L~~l~~--~~~l~~L~~L~i~~C~~l~~l~~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~  165 (238)
                      .+++|+.|+++++ +++.++.  +..+++|++|++.++ .+..+..            ..+..+++|++|++.++. +++
T Consensus       127 ~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~------------~~~~~l~~L~~L~l~~n~-l~~  191 (285)
T 1ozn_A          127 GLAALQYLYLQDN-ALQALPDDTFRDLGNLTHLFLHGN-RISSVPE------------RAFRGLHSLDRLLLHQNR-VAH  191 (285)
T ss_dssp             TCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCEECT------------TTTTTCTTCCEEECCSSC-CCE
T ss_pred             CCcCCCEEECCCC-cccccCHhHhccCCCccEEECCCC-cccccCH------------HHhcCccccCEEECCCCc-ccc
Confidence            4566666666665 4555432  455666777766665 3333321            235567888888888764 555


Q ss_pred             cC-CCCCCCCCccEEeEcCccCCCCCCC
Q 026434          166 VY-PNPLPFPKLKKIKVRGCRHLKKLPL  192 (238)
Q Consensus       166 i~-~~~~~~~~L~~L~i~~C~~L~~lp~  192 (238)
                      +. .....+++|+.|+++++ +++.+|.
T Consensus       192 ~~~~~~~~l~~L~~L~l~~n-~l~~~~~  218 (285)
T 1ozn_A          192 VHPHAFRDLGRLMTLYLFAN-NLSALPT  218 (285)
T ss_dssp             ECTTTTTTCTTCCEEECCSS-CCSCCCH
T ss_pred             cCHhHccCcccccEeeCCCC-cCCcCCH
Confidence            53 23456789999999887 5566663

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.07  E-value=1.8e-09  Score=87.34  Aligned_cols=164  Identities=10%  Similarity=0.018  Sum_probs=116.1

Q ss_pred             cccccCCCcceeEEeee-hHHHHhhhcCchhhcceeEEEEeecCCCCC-cccchhhcccCCeEEEeecCCceEEecccCc
Q 026434            3 ELLGLKHLKVLSWSFGS-SLAVQKFLKYPKLVSITQSVGVYQCRSPPF-NVFHLAYMENLQELELEYCNLEEMKIDSTDE   80 (238)
Q Consensus         3 eL~~L~~L~~L~i~~~~-~~~l~~l~~~~~l~~~L~~L~l~~c~~l~~-~~~~l~~l~~L~~L~i~~c~l~~i~~~~~~~   80 (238)
                      .+..+.+|+.|++.... ...+..  ....-.++|+.|++.+|..+.. ....+.++++|+.|++++|.++.++.     
T Consensus        50 ~~~~l~~L~~L~l~~n~~l~~i~~--~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~lp~-----  122 (239)
T 2xwt_C           50 AFSNLPNISRIYVSIDVTLQQLES--HSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPD-----  122 (239)
T ss_dssp             TTTTCTTCCEEEEECCSSCCEECT--TTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCSCCC-----
T ss_pred             HccCCCCCcEEeCCCCCCcceeCH--hHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCccccc-----
Confidence            35678899999987443 222221  0112235899999999877775 33456788999999999998554421     


Q ss_pred             cCcccccCCCCcc---EEEEecCCCCCcCcc--cccCCCcc-EEEEecccccceecccccccccccccccccccccccce
Q 026434           81 VKKLFQSGFRSLN---TVHVFYCQKAKDLTW--LVFVQNLK-KLRIEFCDDVEEIIGVDKLRDISEIIGSEHNFFAQLEY  154 (238)
Q Consensus        81 ~~~~~~~~l~~L~---~L~i~~C~~L~~l~~--~~~l~~L~-~L~i~~C~~l~~l~~~~~~~~~~~~~~~~~~~~p~L~~  154 (238)
                           ...+++|+   .|+++++++++.++.  +..+++|+ +|++.++ .++.+..            ... ..++|+.
T Consensus       123 -----~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n-~l~~i~~------------~~~-~~~~L~~  183 (239)
T 2xwt_C          123 -----LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNN-GFTSVQG------------YAF-NGTKLDA  183 (239)
T ss_dssp             -----CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSC-CCCEECT------------TTT-TTCEEEE
T ss_pred             -----cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCC-CCcccCH------------hhc-CCCCCCE
Confidence                 23456666   999999878888764  66789999 9999876 4554421            112 2278999


Q ss_pred             eeccccccccccCCC-CCCC-CCccEEeEcCccCCCCCCCC
Q 026434          155 LTISWGINLKGVYPN-PLPF-PKLKKIKVRGCRHLKKLPLN  193 (238)
Q Consensus       155 L~L~~~~~L~~i~~~-~~~~-~~L~~L~i~~C~~L~~lp~~  193 (238)
                      |++.+++.++.++.. ...+ ++|+.|+++++ +++.+|..
T Consensus       184 L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N-~l~~l~~~  223 (239)
T 2xwt_C          184 VYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQT-SVTALPSK  223 (239)
T ss_dssp             EECTTCTTCCEECTTTTTTCSBCCSEEECTTC-CCCCCCCT
T ss_pred             EEcCCCCCcccCCHHHhhccccCCcEEECCCC-ccccCChh
Confidence            999998888888754 3456 89999999984 57888866

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.06  E-value=1.2e-09  Score=96.42  Aligned_cols=176  Identities=15%  Similarity=0.129  Sum_probs=99.0

Q ss_pred             cccccCCCcceeEEeeehHHHHhhhcCchhhcceeEEEEeecCCCCC-cccchhhcccCCeEEEeecCCceEEecccCcc
Q 026434            3 ELLGLKHLKVLSWSFGSSLAVQKFLKYPKLVSITQSVGVYQCRSPPF-NVFHLAYMENLQELELEYCNLEEMKIDSTDEV   81 (238)
Q Consensus         3 eL~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~c~~l~~-~~~~l~~l~~L~~L~i~~c~l~~i~~~~~~~~   81 (238)
                      .+.++.+|+.|++.......+..  ....-.++|+.|++.++. +.. ....+..+++|++|+++++.++.+....    
T Consensus        83 ~~~~l~~L~~L~Ls~n~i~~i~~--~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~----  155 (440)
T 3zyj_A           83 SFKHLRHLEILQLSRNHIRTIEI--GAFNGLANLNTLELFDNR-LTTIPNGAFVYLSKLKELWLRNNPIESIPSYA----  155 (440)
T ss_dssp             TTSSCSSCCEEECCSSCCCEECG--GGGTTCSSCCEEECCSSC-CSSCCTTTSCSCSSCCEEECCSCCCCEECTTT----
T ss_pred             HhhCCCCCCEEECCCCcCCccCh--hhccCCccCCEEECCCCc-CCeeCHhHhhccccCceeeCCCCcccccCHHH----
Confidence            46778888888876432221110  011113578888888763 333 2224667788888888877755443211    


Q ss_pred             CcccccCCCCccEEEEecCCC------------------------CCcCcccccCCCccEEEEecccccceecccccccc
Q 026434           82 KKLFQSGFRSLNTVHVFYCQK------------------------AKDLTWLVFVQNLKKLRIEFCDDVEEIIGVDKLRD  137 (238)
Q Consensus        82 ~~~~~~~l~~L~~L~i~~C~~------------------------L~~l~~~~~l~~L~~L~i~~C~~l~~l~~~~~~~~  137 (238)
                          ...+++|+.|++.+|..                        ++.++.+..+++|++|+++++ .+..+.+      
T Consensus       156 ----~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N-~l~~~~~------  224 (440)
T 3zyj_A          156 ----FNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGN-HLSAIRP------  224 (440)
T ss_dssp             ----TTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCCCTTCSSCCEEECTTS-CCCEECT------
T ss_pred             ----hhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccccccCCCcccCEEECCCC-ccCccCh------
Confidence                12344455555544444                        444444444445555555444 2332211      


Q ss_pred             cccccccccccccccceeeccccccccccCCC-CCCCCCccEEeEcCccCCCCCCCCCCCCCCcceEE
Q 026434          138 ISEIIGSEHNFFAQLEYLTISWGINLKGVYPN-PLPFPKLKKIKVRGCRHLKKLPLNSSSAKERRVVI  204 (238)
Q Consensus       138 ~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~~-~~~~~~L~~L~i~~C~~L~~lp~~~~~~~~~L~~~  204 (238)
                            ..+..+++|+.|++.+. .++.+... ...+++|+.|+++++ +++.+|........+|+.+
T Consensus       225 ------~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L  284 (440)
T 3zyj_A          225 ------GSFQGLMHLQKLWMIQS-QIQVIERNAFDNLQSLVEINLAHN-NLTLLPHDLFTPLHHLERI  284 (440)
T ss_dssp             ------TTTTTCTTCCEEECTTC-CCCEECTTSSTTCTTCCEEECTTS-CCCCCCTTTTSSCTTCCEE
T ss_pred             ------hhhccCccCCEEECCCC-ceeEEChhhhcCCCCCCEEECCCC-CCCccChhHhccccCCCEE
Confidence                  34556788888888765 45555443 346789999999987 6777776543323444443

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.06  E-value=6.7e-10  Score=91.88  Aligned_cols=160  Identities=13%  Similarity=0.063  Sum_probs=112.8

Q ss_pred             ccccccCCCcceeEEeeehHHHHhhhcCchhhcceeEEEEeecCCCCC-cccchhhcccCCeEEEeecCCceEEecccCc
Q 026434            2 KELLGLKHLKVLSWSFGSSLAVQKFLKYPKLVSITQSVGVYQCRSPPF-NVFHLAYMENLQELELEYCNLEEMKIDSTDE   80 (238)
Q Consensus         2 ~eL~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~c~~l~~-~~~~l~~l~~L~~L~i~~c~l~~i~~~~~~~   80 (238)
                      ..+..+.+|+.|++.......+..+.    -.++|+.|++.++. +.. ....+.++++|+.|++++|.+..+...    
T Consensus        57 ~~l~~l~~L~~L~l~~n~l~~~~~l~----~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~----  127 (272)
T 3rfs_A           57 QGIQYLPNVRYLALGGNKLHDISALK----ELTNLTYLILTGNQ-LQSLPNGVFDKLTNLKELVLVENQLQSLPDG----  127 (272)
T ss_dssp             TTGGGCTTCCEEECTTSCCCCCGGGT----TCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECTTSCCCCCCTT----
T ss_pred             cccccCCCCcEEECCCCCCCCchhhc----CCCCCCEEECCCCc-cCccChhHhcCCcCCCEEECCCCcCCccCHH----
Confidence            35677889999988543322222222    23689999999874 333 223367899999999999985544221    


Q ss_pred             cCcccccCCCCccEEEEecCCCCCcCcc--cccCCCccEEEEecccccceecccccccccccccccccccccccceeecc
Q 026434           81 VKKLFQSGFRSLNTVHVFYCQKAKDLTW--LVFVQNLKKLRIEFCDDVEEIIGVDKLRDISEIIGSEHNFFAQLEYLTIS  158 (238)
Q Consensus        81 ~~~~~~~~l~~L~~L~i~~C~~L~~l~~--~~~l~~L~~L~i~~C~~l~~l~~~~~~~~~~~~~~~~~~~~p~L~~L~L~  158 (238)
                          ....+++|+.|+++++ +++.++.  +..+++|++|++.+| .+..+..            ..+..+++|++|++.
T Consensus       128 ----~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~------------~~~~~l~~L~~L~L~  189 (272)
T 3rfs_A          128 ----VFDKLTNLTYLNLAHN-QLQSLPKGVFDKLTNLTELDLSYN-QLQSLPE------------GVFDKLTQLKDLRLY  189 (272)
T ss_dssp             ----TTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCT------------TTTTTCTTCCEEECC
T ss_pred             ----HhccCCCCCEEECCCC-ccCccCHHHhccCccCCEEECCCC-CcCccCH------------HHhcCCccCCEEECC
Confidence                1246889999999998 6888764  578999999999998 4444421            234578999999998


Q ss_pred             ccccccccCCC-CCCCCCccEEeEcCccCCCC
Q 026434          159 WGINLKGVYPN-PLPFPKLKKIKVRGCRHLKK  189 (238)
Q Consensus       159 ~~~~L~~i~~~-~~~~~~L~~L~i~~C~~L~~  189 (238)
                      ++ .++++... ...+++|+.|++.+++-...
T Consensus       190 ~N-~l~~~~~~~~~~l~~L~~L~l~~N~~~~~  220 (272)
T 3rfs_A          190 QN-QLKSVPDGVFDRLTSLQYIWLHDNPWDCT  220 (272)
T ss_dssp             SS-CCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred             CC-cCCccCHHHHhCCcCCCEEEccCCCcccc
Confidence            76 46666554 35689999999998764433

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.06  E-value=6.5e-10  Score=94.70  Aligned_cols=112  Identities=10%  Similarity=0.076  Sum_probs=50.9

Q ss_pred             ccCCCcceeEEeeehHHHHhhhcCchhhcceeEEEEeecCCCCCcccchhhcccCCeEEEeecCCceEEe----------
Q 026434            6 GLKHLKVLSWSFGSSLAVQKFLKYPKLVSITQSVGVYQCRSPPFNVFHLAYMENLQELELEYCNLEEMKI----------   75 (238)
Q Consensus         6 ~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~c~~l~~~~~~l~~l~~L~~L~i~~c~l~~i~~----------   75 (238)
                      .+++|+.|++.......++.+    ...++|+.|++.+|. +.. ++.+.++++|++|++++|.++.+..          
T Consensus        42 ~l~~L~~L~l~~~~i~~~~~~----~~~~~L~~L~l~~n~-i~~-~~~~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L  115 (347)
T 4fmz_A           42 ELESITKLVVAGEKVASIQGI----EYLTNLEYLNLNGNQ-ITD-ISPLSNLVKLTNLYIGTNKITDISALQNLTNLREL  115 (347)
T ss_dssp             HHTTCSEEECCSSCCCCCTTG----GGCTTCCEEECCSSC-CCC-CGGGTTCTTCCEEECCSSCCCCCGGGTTCTTCSEE
T ss_pred             hcccccEEEEeCCccccchhh----hhcCCccEEEccCCc-ccc-chhhhcCCcCCEEEccCCcccCchHHcCCCcCCEE
Confidence            455566666543332222221    112466666666652 222 2335566666666666655332210          


Q ss_pred             --cccCccCcccccCCCCccEEEEecCCCCCcCcccccCCCccEEEEecc
Q 026434           76 --DSTDEVKKLFQSGFRSLNTVHVFYCQKAKDLTWLVFVQNLKKLRIEFC  123 (238)
Q Consensus        76 --~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~l~~L~~L~i~~C  123 (238)
                        ........+....+++|+.|++++|..+..++.+..+++|++|.+.+|
T Consensus       116 ~l~~n~i~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~  165 (347)
T 4fmz_A          116 YLNEDNISDISPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTES  165 (347)
T ss_dssp             ECTTSCCCCCGGGTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSS
T ss_pred             ECcCCcccCchhhccCCceeEEECCCCCCcccccchhhCCCCcEEEecCC
Confidence              000000001123455555555555555555444555555555555554

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.05  E-value=3.7e-10  Score=95.28  Aligned_cols=163  Identities=16%  Similarity=0.229  Sum_probs=96.5

Q ss_pred             ccCCCcceeEEeeehHHHHhhhcCchhhcceeEEEEeecCCCCCcccchhhcccCCeEEEeecCCceEEecccCccCccc
Q 026434            6 GLKHLKVLSWSFGSSLAVQKFLKYPKLVSITQSVGVYQCRSPPFNVFHLAYMENLQELELEYCNLEEMKIDSTDEVKKLF   85 (238)
Q Consensus         6 ~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~c~~l~~~~~~l~~l~~L~~L~i~~c~l~~i~~~~~~~~~~~~   85 (238)
                      .+.+|+.|++.......+..+    ...++|+.|++.++. +.. ++.+.++++|++|++++|.+..+          +.
T Consensus        39 ~l~~L~~L~l~~~~i~~l~~~----~~l~~L~~L~L~~n~-i~~-~~~~~~l~~L~~L~L~~n~l~~~----------~~  102 (308)
T 1h6u_A           39 DLDGITTLSAFGTGVTTIEGV----QYLNNLIGLELKDNQ-ITD-LAPLKNLTKITELELSGNPLKNV----------SA  102 (308)
T ss_dssp             HHHTCCEEECTTSCCCCCTTG----GGCTTCCEEECCSSC-CCC-CGGGTTCCSCCEEECCSCCCSCC----------GG
T ss_pred             HcCCcCEEEeeCCCccCchhh----hccCCCCEEEccCCc-CCC-ChhHccCCCCCEEEccCCcCCCc----------hh
Confidence            456677776643322222222    223578888888774 232 34477788888888888875443          12


Q ss_pred             ccCCCCccEEEEecCCCCCcCcccccCCCccEEEEecccccceeccccccc----------cccccccccccccccccee
Q 026434           86 QSGFRSLNTVHVFYCQKAKDLTWLVFVQNLKKLRIEFCDDVEEIIGVDKLR----------DISEIIGSEHNFFAQLEYL  155 (238)
Q Consensus        86 ~~~l~~L~~L~i~~C~~L~~l~~~~~l~~L~~L~i~~C~~l~~l~~~~~~~----------~~~~~~~~~~~~~p~L~~L  155 (238)
                      ...+++|+.|++++| +++.++.+..+++|++|++.++ .+..+.......          .....  ..+..+++|+.|
T Consensus       103 ~~~l~~L~~L~l~~n-~l~~~~~l~~l~~L~~L~l~~n-~l~~~~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L  178 (308)
T 1h6u_A          103 IAGLQSIKTLDLTST-QITDVTPLAGLSNLQVLYLDLN-QITNISPLAGLTNLQYLSIGNAQVSDL--TPLANLSKLTTL  178 (308)
T ss_dssp             GTTCTTCCEEECTTS-CCCCCGGGTTCTTCCEEECCSS-CCCCCGGGGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEE
T ss_pred             hcCCCCCCEEECCCC-CCCCchhhcCCCCCCEEECCCC-ccCcCccccCCCCccEEEccCCcCCCC--hhhcCCCCCCEE
Confidence            356889999999888 5888877888999999999887 343332110000          00001  124455666666


Q ss_pred             eccccccccccCCCCCCCCCccEEeEcCccCCCCCC
Q 026434          156 TISWGINLKGVYPNPLPFPKLKKIKVRGCRHLKKLP  191 (238)
Q Consensus       156 ~L~~~~~L~~i~~~~~~~~~L~~L~i~~C~~L~~lp  191 (238)
                      +++++ .++++.. ...+++|+.|++++| +++.+|
T Consensus       179 ~l~~n-~l~~~~~-l~~l~~L~~L~L~~N-~l~~~~  211 (308)
T 1h6u_A          179 KADDN-KISDISP-LASLPNLIEVHLKNN-QISDVS  211 (308)
T ss_dssp             ECCSS-CCCCCGG-GGGCTTCCEEECTTS-CCCBCG
T ss_pred             ECCCC-ccCcChh-hcCCCCCCEEEccCC-ccCccc
Confidence            66544 2333322 345678888888877 345554

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.04  E-value=4.6e-10  Score=93.98  Aligned_cols=77  Identities=16%  Similarity=0.116  Sum_probs=39.7

Q ss_pred             cceeEEEEeecCCCCCcccchhhcccCCeEEEeecCCceEEecccCccCcccccCCCCccEEEEecCCCCCcCcccccCC
Q 026434           34 SITQSVGVYQCRSPPFNVFHLAYMENLQELELEYCNLEEMKIDSTDEVKKLFQSGFRSLNTVHVFYCQKAKDLTWLVFVQ  113 (238)
Q Consensus        34 ~~L~~L~l~~c~~l~~~~~~l~~l~~L~~L~i~~c~l~~i~~~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~l~  113 (238)
                      ++|+.|++.++. +.. +..+.++++|+.|++++|.++.+          +....+++|+.|+++++ +++.++.+..++
T Consensus        68 ~~L~~L~L~~n~-l~~-~~~l~~l~~L~~L~l~~n~l~~~----------~~l~~l~~L~~L~L~~n-~i~~~~~l~~l~  134 (291)
T 1h6t_A           68 PNVTKLFLNGNK-LTD-IKPLANLKNLGWLFLDENKVKDL----------SSLKDLKKLKSLSLEHN-GISDINGLVHLP  134 (291)
T ss_dssp             TTCCEEECCSSC-CCC-CGGGTTCTTCCEEECCSSCCCCG----------GGGTTCTTCCEEECTTS-CCCCCGGGGGCT
T ss_pred             CCCCEEEccCCc-cCC-CcccccCCCCCEEECCCCcCCCC----------hhhccCCCCCEEECCCC-cCCCChhhcCCC
Confidence            456666666553 121 22355666666666666553322          11234555555555555 355554455555


Q ss_pred             CccEEEEecc
Q 026434          114 NLKKLRIEFC  123 (238)
Q Consensus       114 ~L~~L~i~~C  123 (238)
                      +|++|+++++
T Consensus       135 ~L~~L~l~~n  144 (291)
T 1h6t_A          135 QLESLYLGNN  144 (291)
T ss_dssp             TCCEEECCSS
T ss_pred             CCCEEEccCC
Confidence            5555555554

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.03  E-value=6.3e-10  Score=93.16  Aligned_cols=150  Identities=13%  Similarity=0.103  Sum_probs=110.1

Q ss_pred             ccccccCCCcceeEEeeehHHHHhhhcCchhhcceeEEEEeecCCCCCcccchhhcccCCeEEEeecCCceEEecccCcc
Q 026434            2 KELLGLKHLKVLSWSFGSSLAVQKFLKYPKLVSITQSVGVYQCRSPPFNVFHLAYMENLQELELEYCNLEEMKIDSTDEV   81 (238)
Q Consensus         2 ~eL~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~c~~l~~~~~~l~~l~~L~~L~i~~c~l~~i~~~~~~~~   81 (238)
                      +.+..+.+|+.|++.......+..+    .-.++|+.|++.++. +. .++.+..+++|++|++++|.+..+        
T Consensus        62 ~~~~~l~~L~~L~L~~n~l~~~~~l----~~l~~L~~L~l~~n~-l~-~~~~l~~l~~L~~L~L~~n~i~~~--------  127 (291)
T 1h6t_A           62 QGIQYLPNVTKLFLNGNKLTDIKPL----ANLKNLGWLFLDENK-VK-DLSSLKDLKKLKSLSLEHNGISDI--------  127 (291)
T ss_dssp             TTGGGCTTCCEEECCSSCCCCCGGG----TTCTTCCEEECCSSC-CC-CGGGGTTCTTCCEEECTTSCCCCC--------
T ss_pred             hhHhcCCCCCEEEccCCccCCCccc----ccCCCCCEEECCCCc-CC-CChhhccCCCCCEEECCCCcCCCC--------
Confidence            3466778888888764433333222    223689999999874 33 356688899999999999985544        


Q ss_pred             CcccccCCCCccEEEEecCCCCCcCcccccCCCccEEEEecccccceecccccccccccccccccccccccceeeccccc
Q 026434           82 KKLFQSGFRSLNTVHVFYCQKAKDLTWLVFVQNLKKLRIEFCDDVEEIIGVDKLRDISEIIGSEHNFFAQLEYLTISWGI  161 (238)
Q Consensus        82 ~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~l~~L~~L~i~~C~~l~~l~~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~  161 (238)
                        +....+++|+.|+++++ +++.++.+..+++|++|++++| .+..+              ..+..+++|+.|+++++ 
T Consensus       128 --~~l~~l~~L~~L~l~~n-~l~~~~~l~~l~~L~~L~L~~N-~l~~~--------------~~l~~l~~L~~L~L~~N-  188 (291)
T 1h6t_A          128 --NGLVHLPQLESLYLGNN-KITDITVLSRLTKLDTLSLEDN-QISDI--------------VPLAGLTKLQNLYLSKN-  188 (291)
T ss_dssp             --GGGGGCTTCCEEECCSS-CCCCCGGGGGCTTCSEEECCSS-CCCCC--------------GGGTTCTTCCEEECCSS-
T ss_pred             --hhhcCCCCCCEEEccCC-cCCcchhhccCCCCCEEEccCC-ccccc--------------hhhcCCCccCEEECCCC-
Confidence              12356899999999988 6888888889999999999988 44444              22556899999999876 


Q ss_pred             cccccCCCCCCCCCccEEeEcCcc
Q 026434          162 NLKGVYPNPLPFPKLKKIKVRGCR  185 (238)
Q Consensus       162 ~L~~i~~~~~~~~~L~~L~i~~C~  185 (238)
                      .++++.. ...+++|+.|++.+++
T Consensus       189 ~i~~l~~-l~~l~~L~~L~l~~n~  211 (291)
T 1h6t_A          189 HISDLRA-LAGLKNLDVLELFSQE  211 (291)
T ss_dssp             CCCBCGG-GTTCTTCSEEEEEEEE
T ss_pred             cCCCChh-hccCCCCCEEECcCCc
Confidence            4555542 4568999999999875

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.03  E-value=2.5e-09  Score=84.14  Aligned_cols=149  Identities=15%  Similarity=0.182  Sum_probs=95.0

Q ss_pred             ccCCCcceeEEeeehHHHHhhhcCchhhcceeEEEEeecCCCCCcccchhhcccCCeEEEeecCCceEEecccCccCccc
Q 026434            6 GLKHLKVLSWSFGSSLAVQKFLKYPKLVSITQSVGVYQCRSPPFNVFHLAYMENLQELELEYCNLEEMKIDSTDEVKKLF   85 (238)
Q Consensus         6 ~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~c~~l~~~~~~l~~l~~L~~L~i~~c~l~~i~~~~~~~~~~~~   85 (238)
                      .+.+|+.|++.......+..    ....++|+.|++.+| .+. .++.+..+++|++|++++|.+.....        ..
T Consensus        42 ~l~~L~~L~l~~n~i~~l~~----l~~l~~L~~L~l~~n-~~~-~~~~l~~l~~L~~L~l~~n~l~~~~~--------~~  107 (197)
T 4ezg_A           42 QMNSLTYITLANINVTDLTG----IEYAHNIKDLTINNI-HAT-NYNPISGLSNLERLRIMGKDVTSDKI--------PN  107 (197)
T ss_dssp             HHHTCCEEEEESSCCSCCTT----GGGCTTCSEEEEESC-CCS-CCGGGTTCTTCCEEEEECTTCBGGGS--------CC
T ss_pred             hcCCccEEeccCCCccChHH----HhcCCCCCEEEccCC-CCC-cchhhhcCCCCCEEEeECCccCcccC--------hh
Confidence            45677777776433332222    222357888888888 333 35567778888888888877432111        22


Q ss_pred             ccCCCCccEEEEecCCCCCc--CcccccCCCccEEEEecccccceecccccccccccccccccccccccceeeccccccc
Q 026434           86 QSGFRSLNTVHVFYCQKAKD--LTWLVFVQNLKKLRIEFCDDVEEIIGVDKLRDISEIIGSEHNFFAQLEYLTISWGINL  163 (238)
Q Consensus        86 ~~~l~~L~~L~i~~C~~L~~--l~~~~~l~~L~~L~i~~C~~l~~l~~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L  163 (238)
                      ...+++|+.|++++| +++.  ...+..+++|++|++++|..+..+              ..+..+++|++|++.++. +
T Consensus       108 l~~l~~L~~L~Ls~n-~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~--------------~~l~~l~~L~~L~l~~n~-i  171 (197)
T 4ezg_A          108 LSGLTSLTLLDISHS-AHDDSILTKINTLPKVNSIDLSYNGAITDI--------------MPLKTLPELKSLNIQFDG-V  171 (197)
T ss_dssp             CTTCTTCCEEECCSS-BCBGGGHHHHTTCSSCCEEECCSCTBCCCC--------------GGGGGCSSCCEEECTTBC-C
T ss_pred             hcCCCCCCEEEecCC-ccCcHhHHHHhhCCCCCEEEccCCCCcccc--------------HhhcCCCCCCEEECCCCC-C
Confidence            345788888888887 4555  334667888888888888655544              234567888888887763 5


Q ss_pred             cccCCCCCCCCCccEEeEcCcc
Q 026434          164 KGVYPNPLPFPKLKKIKVRGCR  185 (238)
Q Consensus       164 ~~i~~~~~~~~~L~~L~i~~C~  185 (238)
                      +.+. ....+++|+.|++.+.+
T Consensus       172 ~~~~-~l~~l~~L~~L~l~~N~  192 (197)
T 4ezg_A          172 HDYR-GIEDFPKLNQLYAFSQT  192 (197)
T ss_dssp             CCCT-TGGGCSSCCEEEECBC-
T ss_pred             cChH-HhccCCCCCEEEeeCcc
Confidence            5544 34557788888877643

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.01  E-value=5.7e-10  Score=102.73  Aligned_cols=159  Identities=14%  Similarity=0.150  Sum_probs=79.2

Q ss_pred             cccCCCcceeEEeeehHHHHhhhcCchhhcceeEEEEeecCCCCCcccchhhcccCCeEEEeecCCceEEecccCccCcc
Q 026434            5 LGLKHLKVLSWSFGSSLAVQKFLKYPKLVSITQSVGVYQCRSPPFNVFHLAYMENLQELELEYCNLEEMKIDSTDEVKKL   84 (238)
Q Consensus         5 ~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~c~~l~~~~~~l~~l~~L~~L~i~~c~l~~i~~~~~~~~~~~   84 (238)
                      ..|.+|+.|++.......++.+    ..+++|+.|.|.++. +.. ++.+..+++|+.|++++|.+..+.          
T Consensus        40 ~~L~~L~~L~l~~n~i~~l~~l----~~l~~L~~L~Ls~N~-l~~-~~~l~~l~~L~~L~Ls~N~l~~l~----------  103 (605)
T 1m9s_A           40 NELNSIDQIIANNSDIKSVQGI----QYLPNVTKLFLNGNK-LTD-IKPLTNLKNLGWLFLDENKIKDLS----------  103 (605)
T ss_dssp             HHHTTCCCCBCTTCCCCCCTTG----GGCTTCCEEECTTSC-CCC-CGGGGGCTTCCEEECCSSCCCCCT----------
T ss_pred             hcCCCCCEEECcCCCCCCChHH----ccCCCCCEEEeeCCC-CCC-ChhhccCCCCCEEECcCCCCCCCh----------
Confidence            3455666666543322222221    223567777777663 222 334666777777777776643321          


Q ss_pred             cccCCCCccEEEEecCCCCCcCcccccCCCccEEEEecccccceecccccc----------cccccccccccccccccce
Q 026434           85 FQSGFRSLNTVHVFYCQKAKDLTWLVFVQNLKKLRIEFCDDVEEIIGVDKL----------RDISEIIGSEHNFFAQLEY  154 (238)
Q Consensus        85 ~~~~l~~L~~L~i~~C~~L~~l~~~~~l~~L~~L~i~~C~~l~~l~~~~~~----------~~~~~~~~~~~~~~p~L~~  154 (238)
                      ....+++|+.|++++| ++..++.+..+++|+.|++++| .+..+......          ......  ..+..+++|+.
T Consensus       104 ~l~~l~~L~~L~Ls~N-~l~~l~~l~~l~~L~~L~Ls~N-~l~~l~~l~~l~~L~~L~Ls~N~l~~~--~~l~~l~~L~~  179 (605)
T 1m9s_A          104 SLKDLKKLKSLSLEHN-GISDINGLVHLPQLESLYLGNN-KITDITVLSRLTKLDTLSLEDNQISDI--VPLAGLTKLQN  179 (605)
T ss_dssp             TSTTCTTCCEEECTTS-CCCCCGGGGGCTTCSEEECCSS-CCCCCGGGGSCTTCSEEECCSSCCCCC--GGGTTCTTCCE
T ss_pred             hhccCCCCCEEEecCC-CCCCCccccCCCccCEEECCCC-ccCCchhhcccCCCCEEECcCCcCCCc--hhhccCCCCCE
Confidence            1233455555555544 3444444444555555555444 12211000000          000000  12456778888


Q ss_pred             eeccccccccccCCCCCCCCCccEEeEcCcc
Q 026434          155 LTISWGINLKGVYPNPLPFPKLKKIKVRGCR  185 (238)
Q Consensus       155 L~L~~~~~L~~i~~~~~~~~~L~~L~i~~C~  185 (238)
                      |+|+++ .+.+++ ....+++|+.|++.+|+
T Consensus       180 L~Ls~N-~i~~l~-~l~~l~~L~~L~L~~N~  208 (605)
T 1m9s_A          180 LYLSKN-HISDLR-ALAGLKNLDVLELFSQE  208 (605)
T ss_dssp             EECCSS-CCCBCG-GGTTCTTCSEEECCSEE
T ss_pred             EECcCC-CCCCCh-HHccCCCCCEEEccCCc
Confidence            888765 444442 24457888888888775

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.00  E-value=1.7e-09  Score=95.45  Aligned_cols=181  Identities=13%  Similarity=0.093  Sum_probs=104.8

Q ss_pred             CCCcceeEEeeehHHHHhhhcCchhhcceeEEEEeecCCCCC-cccchhhcccCCeEEEeecCCceEEecccCccCcccc
Q 026434            8 KHLKVLSWSFGSSLAVQKFLKYPKLVSITQSVGVYQCRSPPF-NVFHLAYMENLQELELEYCNLEEMKIDSTDEVKKLFQ   86 (238)
Q Consensus         8 ~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~c~~l~~-~~~~l~~l~~L~~L~i~~c~l~~i~~~~~~~~~~~~~   86 (238)
                      .+++.|++.......+..  ....-.++|+.|++.++. +.. ....+.++++|+.|++++|.++.+..+        ..
T Consensus        64 ~~l~~L~L~~n~i~~~~~--~~~~~l~~L~~L~Ls~n~-i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~--------~~  132 (440)
T 3zyj_A           64 TNTRLLNLHENQIQIIKV--NSFKHLRHLEILQLSRNH-IRTIEIGAFNGLANLNTLELFDNRLTTIPNG--------AF  132 (440)
T ss_dssp             TTCSEEECCSCCCCEECT--TTTSSCSSCCEEECCSSC-CCEECGGGGTTCSSCCEEECCSSCCSSCCTT--------TS
T ss_pred             CCCcEEEccCCcCCeeCH--HHhhCCCCCCEEECCCCc-CCccChhhccCCccCCEEECCCCcCCeeCHh--------Hh
Confidence            456777765333222110  111223689999999874 333 334678899999999999986655322        23


Q ss_pred             cCCCCccEEEEecCCCCCcCcc--cccCCCccEEEEecccccceeccccc------------cccccccccccccccccc
Q 026434           87 SGFRSLNTVHVFYCQKAKDLTW--LVFVQNLKKLRIEFCDDVEEIIGVDK------------LRDISEIIGSEHNFFAQL  152 (238)
Q Consensus        87 ~~l~~L~~L~i~~C~~L~~l~~--~~~l~~L~~L~i~~C~~l~~l~~~~~------------~~~~~~~~~~~~~~~p~L  152 (238)
                      ..+++|+.|+++++ +++.++.  +..+++|++|++.+|..+..+....-            .......  ..+..+++|
T Consensus       133 ~~l~~L~~L~L~~N-~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L  209 (440)
T 3zyj_A          133 VYLSKLKELWLRNN-PIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREI--PNLTPLIKL  209 (440)
T ss_dssp             CSCSSCCEEECCSC-CCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSC--CCCTTCSSC
T ss_pred             hccccCceeeCCCC-cccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccc--cccCCCccc
Confidence            46899999999987 5777653  56889999999999887776632100            0000001  123344556


Q ss_pred             ceeeccccccccccCC-CCCCCCCccEEeEcCccCCCCCCCCCCCCCCcceEE
Q 026434          153 EYLTISWGINLKGVYP-NPLPFPKLKKIKVRGCRHLKKLPLNSSSAKERRVVI  204 (238)
Q Consensus       153 ~~L~L~~~~~L~~i~~-~~~~~~~L~~L~i~~C~~L~~lp~~~~~~~~~L~~~  204 (238)
                      +.|+|+++ .++.+.. ....+++|+.|++.++ +++.++...-....+|+.+
T Consensus       210 ~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L  260 (440)
T 3zyj_A          210 DELDLSGN-HLSAIRPGSFQGLMHLQKLWMIQS-QIQVIERNAFDNLQSLVEI  260 (440)
T ss_dssp             CEEECTTS-CCCEECTTTTTTCTTCCEEECTTC-CCCEECTTSSTTCTTCCEE
T ss_pred             CEEECCCC-ccCccChhhhccCccCCEEECCCC-ceeEEChhhhcCCCCCCEE
Confidence            66666554 3444432 2345667777777665 3444443322222344444

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.00  E-value=6.2e-10  Score=94.82  Aligned_cols=154  Identities=14%  Similarity=0.138  Sum_probs=105.3

Q ss_pred             ccccCCCcceeEEeeehHHHHhhhcCchhhcceeEEEEeecCCCCCcccchhhcccCCeEEEeecCCceEEecccCccCc
Q 026434            4 LLGLKHLKVLSWSFGSSLAVQKFLKYPKLVSITQSVGVYQCRSPPFNVFHLAYMENLQELELEYCNLEEMKIDSTDEVKK   83 (238)
Q Consensus         4 L~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~c~~l~~~~~~l~~l~~L~~L~i~~c~l~~i~~~~~~~~~~   83 (238)
                      +..+.+|+.|++.......+..+    ...++|+.|.+.++.- .. +..+..+++|+.|++++|.+..+.         
T Consensus       173 ~~~l~~L~~L~l~~n~l~~~~~~----~~l~~L~~L~l~~n~l-~~-~~~~~~~~~L~~L~l~~n~l~~~~---------  237 (347)
T 4fmz_A          173 IANLTDLYSLSLNYNQIEDISPL----ASLTSLHYFTAYVNQI-TD-ITPVANMTRLNSLKIGNNKITDLS---------  237 (347)
T ss_dssp             GGGCTTCSEEECTTSCCCCCGGG----GGCTTCCEEECCSSCC-CC-CGGGGGCTTCCEEECCSSCCCCCG---------
T ss_pred             hccCCCCCEEEccCCcccccccc----cCCCccceeecccCCC-CC-CchhhcCCcCCEEEccCCccCCCc---------
Confidence            56778888888754332222222    2235788898888743 22 344788899999999998854432         


Q ss_pred             ccccCCCCccEEEEecCCCCCcCcccccCCCccEEEEecccccceecccccccccccccccccccccccceeeccccccc
Q 026434           84 LFQSGFRSLNTVHVFYCQKAKDLTWLVFVQNLKKLRIEFCDDVEEIIGVDKLRDISEIIGSEHNFFAQLEYLTISWGINL  163 (238)
Q Consensus        84 ~~~~~l~~L~~L~i~~C~~L~~l~~~~~l~~L~~L~i~~C~~l~~l~~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L  163 (238)
                       ....+++|+.|++++| .++.++.+..+++|++|++.+| .+..+              .....+++|+.|++.++. +
T Consensus       238 -~~~~l~~L~~L~l~~n-~l~~~~~~~~l~~L~~L~l~~n-~l~~~--------------~~~~~l~~L~~L~L~~n~-l  299 (347)
T 4fmz_A          238 -PLANLSQLTWLEIGTN-QISDINAVKDLTKLKMLNVGSN-QISDI--------------SVLNNLSQLNSLFLNNNQ-L  299 (347)
T ss_dssp             -GGTTCTTCCEEECCSS-CCCCCGGGTTCTTCCEEECCSS-CCCCC--------------GGGGGCTTCSEEECCSSC-C
T ss_pred             -chhcCCCCCEEECCCC-ccCCChhHhcCCCcCEEEccCC-ccCCC--------------hhhcCCCCCCEEECcCCc-C
Confidence             1356889999999888 6777777788899999999887 44443              234567888888888774 3


Q ss_pred             cccCC-CCCCCCCccEEeEcCccCCCCCC
Q 026434          164 KGVYP-NPLPFPKLKKIKVRGCRHLKKLP  191 (238)
Q Consensus       164 ~~i~~-~~~~~~~L~~L~i~~C~~L~~lp  191 (238)
                      +.... ....+++|+.|++++|+ ++.++
T Consensus       300 ~~~~~~~l~~l~~L~~L~L~~n~-l~~~~  327 (347)
T 4fmz_A          300 GNEDMEVIGGLTNLTTLFLSQNH-ITDIR  327 (347)
T ss_dssp             CGGGHHHHHTCTTCSEEECCSSS-CCCCG
T ss_pred             CCcChhHhhccccCCEEEccCCc-ccccc
Confidence            33322 23457888888888887 55554

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=98.98  E-value=7.6e-10  Score=101.87  Aligned_cols=140  Identities=21%  Similarity=0.301  Sum_probs=91.6

Q ss_pred             hcceeEEEEeecCCCCCcccchhhcccCCeEEEeecCCceEEecccCccCcccccCCCCccEEEEecCCCCCcCcccccC
Q 026434           33 VSITQSVGVYQCRSPPFNVFHLAYMENLQELELEYCNLEEMKIDSTDEVKKLFQSGFRSLNTVHVFYCQKAKDLTWLVFV  112 (238)
Q Consensus        33 ~~~L~~L~l~~c~~l~~~~~~l~~l~~L~~L~i~~c~l~~i~~~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~l  112 (238)
                      +.+|+.|.+.++. +. .++.+..+++|+.|++++|.+..+.          ....+++|+.|++++| ++..++.+..+
T Consensus        42 L~~L~~L~l~~n~-i~-~l~~l~~l~~L~~L~Ls~N~l~~~~----------~l~~l~~L~~L~Ls~N-~l~~l~~l~~l  108 (605)
T 1m9s_A           42 LNSIDQIIANNSD-IK-SVQGIQYLPNVTKLFLNGNKLTDIK----------PLTNLKNLGWLFLDEN-KIKDLSSLKDL  108 (605)
T ss_dssp             HTTCCCCBCTTCC-CC-CCTTGGGCTTCCEEECTTSCCCCCG----------GGGGCTTCCEEECCSS-CCCCCTTSTTC
T ss_pred             CCCCCEEECcCCC-CC-CChHHccCCCCCEEEeeCCCCCCCh----------hhccCCCCCEEECcCC-CCCCChhhccC
Confidence            3578888887764 23 3567888999999999999855442          2456899999999998 68888888899


Q ss_pred             CCccEEEEecccccceecccccc----------cccccccccccccccccceeeccccccccccCCCCCCCCCccEEeEc
Q 026434          113 QNLKKLRIEFCDDVEEIIGVDKL----------RDISEIIGSEHNFFAQLEYLTISWGINLKGVYPNPLPFPKLKKIKVR  182 (238)
Q Consensus       113 ~~L~~L~i~~C~~l~~l~~~~~~----------~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~~~~~~~~L~~L~i~  182 (238)
                      ++|+.|++.+|. +..+......          ......  ..+..+++|+.|+|+++ .+.++.. ...+++|+.|+++
T Consensus       109 ~~L~~L~Ls~N~-l~~l~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N-~l~~~~~-l~~l~~L~~L~Ls  183 (605)
T 1m9s_A          109 KKLKSLSLEHNG-ISDINGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDN-QISDIVP-LAGLTKLQNLYLS  183 (605)
T ss_dssp             TTCCEEECTTSC-CCCCGGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSS-CCCCCGG-GTTCTTCCEEECC
T ss_pred             CCCCEEEecCCC-CCCCccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCC-cCCCchh-hccCCCCCEEECc
Confidence            999999998873 4333111000          000001  23445666777777655 2443332 4457888888888


Q ss_pred             CccCCCCCC
Q 026434          183 GCRHLKKLP  191 (238)
Q Consensus       183 ~C~~L~~lp  191 (238)
                      +| ++..+|
T Consensus       184 ~N-~i~~l~  191 (605)
T 1m9s_A          184 KN-HISDLR  191 (605)
T ss_dssp             SS-CCCBCG
T ss_pred             CC-CCCCCh
Confidence            76 344443

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=98.95  E-value=3.4e-09  Score=94.24  Aligned_cols=165  Identities=19%  Similarity=0.193  Sum_probs=81.3

Q ss_pred             cccccCCCcceeEEeeehHHHHhhhcCchhhcceeEEEEeecCCCCC-cccchhhcccCCeEEEeecCCceEEecccCc-
Q 026434            3 ELLGLKHLKVLSWSFGSSLAVQKFLKYPKLVSITQSVGVYQCRSPPF-NVFHLAYMENLQELELEYCNLEEMKIDSTDE-   80 (238)
Q Consensus         3 eL~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~c~~l~~-~~~~l~~l~~L~~L~i~~c~l~~i~~~~~~~-   80 (238)
                      .+..+.+|+.|++.......+.  .....-.++|+.|++.++. +.. ....+.++++|++|++++|.+..+....... 
T Consensus        51 ~~~~l~~L~~L~L~~n~i~~~~--~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l  127 (477)
T 2id5_A           51 EFASFPHLEELELNENIVSAVE--PGAFNNLFNLRTLGLRSNR-LKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDL  127 (477)
T ss_dssp             TTTTCTTCCEEECTTSCCCEEC--TTTTTTCTTCCEEECCSSC-CCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTC
T ss_pred             HccCCCCCCEEECCCCccCEeC--hhhhhCCccCCEEECCCCc-CCccCcccccCCCCCCEEECCCCccccCChhHcccc
Confidence            4567788888887532211110  1111123578888887763 232 2223566777777777776643332111100 


Q ss_pred             ---------------cCcccccCCCCccEEEEecCCCCCcCcc--cccCCCccEEEEecccccceecccccccccccccc
Q 026434           81 ---------------VKKLFQSGFRSLNTVHVFYCQKAKDLTW--LVFVQNLKKLRIEFCDDVEEIIGVDKLRDISEIIG  143 (238)
Q Consensus        81 ---------------~~~~~~~~l~~L~~L~i~~C~~L~~l~~--~~~l~~L~~L~i~~C~~l~~l~~~~~~~~~~~~~~  143 (238)
                                     ..+.....+++|+.|+++++ +++.++.  +..+++|+.|++.++. +..+..            
T Consensus       128 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~l~~l~~L~~L~l~~n~-i~~~~~------------  193 (477)
T 2id5_A          128 YNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKC-NLTSIPTEALSHLHGLIVLRLRHLN-INAIRD------------  193 (477)
T ss_dssp             TTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESC-CCSSCCHHHHTTCTTCCEEEEESCC-CCEECT------------
T ss_pred             ccCCEEECCCCccceeChhhccCCCCCCEEECCCC-cCcccChhHhcccCCCcEEeCCCCc-CcEeCh------------
Confidence                           00112234455555555555 3444432  3455555655555542 222211            


Q ss_pred             cccccccccceeeccccccccccCCCCCCCCCccEEeEcCc
Q 026434          144 SEHNFFAQLEYLTISWGINLKGVYPNPLPFPKLKKIKVRGC  184 (238)
Q Consensus       144 ~~~~~~p~L~~L~L~~~~~L~~i~~~~~~~~~L~~L~i~~C  184 (238)
                      ..+..+++|+.|++.+++.+..++.......+|+.|++.+|
T Consensus       194 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n  234 (477)
T 2id5_A          194 YSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHC  234 (477)
T ss_dssp             TCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESS
T ss_pred             hhcccCcccceeeCCCCccccccCcccccCccccEEECcCC
Confidence            23445667777777766655555543333345555555544

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=98.93  E-value=4.1e-09  Score=86.98  Aligned_cols=170  Identities=15%  Similarity=0.123  Sum_probs=106.2

Q ss_pred             CCCcceeEEeeehHHHHhhhcCchhhcceeEEEEeecCCCCC-cccchhhcccCCeEEEeecCCceEEecccCccCcccc
Q 026434            8 KHLKVLSWSFGSSLAVQKFLKYPKLVSITQSVGVYQCRSPPF-NVFHLAYMENLQELELEYCNLEEMKIDSTDEVKKLFQ   86 (238)
Q Consensus         8 ~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~c~~l~~-~~~~l~~l~~L~~L~i~~c~l~~i~~~~~~~~~~~~~   86 (238)
                      .+|+.|++.......+..  ....-.++|+.|++.++. +.. ....+.++++|++|+++++.+..+....        .
T Consensus        37 ~~l~~L~l~~n~l~~~~~--~~~~~l~~L~~L~l~~n~-l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~--------~  105 (270)
T 2o6q_A           37 ADTKKLDLQSNKLSSLPS--KAFHRLTKLRLLYLNDNK-LQTLPAGIFKELKNLETLWVTDNKLQALPIGV--------F  105 (270)
T ss_dssp             TTCSEEECCSSCCSCCCT--TSSSSCTTCCEEECCSSC-CSCCCTTTTSSCTTCCEEECCSSCCCCCCTTT--------T
T ss_pred             CCCCEEECcCCCCCeeCH--HHhcCCCCCCEEECCCCc-cCeeChhhhcCCCCCCEEECCCCcCCcCCHhH--------c
Confidence            357777765332222211  011223689999998864 232 2223567889999999988855443221        2


Q ss_pred             cCCCCccEEEEecCCCCCcCcc--cccCCCccEEEEecccccceecccccccccccccccccccccccceeecccccccc
Q 026434           87 SGFRSLNTVHVFYCQKAKDLTW--LVFVQNLKKLRIEFCDDVEEIIGVDKLRDISEIIGSEHNFFAQLEYLTISWGINLK  164 (238)
Q Consensus        87 ~~l~~L~~L~i~~C~~L~~l~~--~~~l~~L~~L~i~~C~~l~~l~~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~  164 (238)
                      ..+++|+.|+++++ +++.++.  +..+++|++|++.++ .+..+..            ..+..+++|++|++.++ .++
T Consensus       106 ~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~------------~~~~~l~~L~~L~L~~n-~l~  170 (270)
T 2o6q_A          106 DQLVNLAELRLDRN-QLKSLPPRVFDSLTKLTYLSLGYN-ELQSLPK------------GVFDKLTSLKELRLYNN-QLK  170 (270)
T ss_dssp             TTCSSCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCT------------TTTTTCTTCCEEECCSS-CCS
T ss_pred             ccccCCCEEECCCC-ccCeeCHHHhCcCcCCCEEECCCC-cCCccCH------------hHccCCcccceeEecCC-cCc
Confidence            45788999999886 5666653  567889999999887 3443321            23456788888888765 456


Q ss_pred             ccCCC-CCCCCCccEEeEcCccCCCCCCCCCCCCCCcceEE
Q 026434          165 GVYPN-PLPFPKLKKIKVRGCRHLKKLPLNSSSAKERRVVI  204 (238)
Q Consensus       165 ~i~~~-~~~~~~L~~L~i~~C~~L~~lp~~~~~~~~~L~~~  204 (238)
                      .+... ...+++|+.|+++++ +++.+|........+|+.+
T Consensus       171 ~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L  210 (270)
T 2o6q_A          171 RVPEGAFDKLTELKTLKLDNN-QLKRVPEGAFDSLEKLKML  210 (270)
T ss_dssp             CCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEE
T ss_pred             EeChhHhccCCCcCEEECCCC-cCCcCCHHHhccccCCCEE
Confidence            65543 345788888888887 6777776543333455544

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=98.92  E-value=5.8e-09  Score=87.26  Aligned_cols=173  Identities=13%  Similarity=0.085  Sum_probs=94.4

Q ss_pred             cccccCCCcceeEEeeehHHHHhhhcCchhhcceeEEEEeecCCCCC-cccchhhcccCCeEEEeecCCceEEecccCcc
Q 026434            3 ELLGLKHLKVLSWSFGSSLAVQKFLKYPKLVSITQSVGVYQCRSPPF-NVFHLAYMENLQELELEYCNLEEMKIDSTDEV   81 (238)
Q Consensus         3 eL~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~c~~l~~-~~~~l~~l~~L~~L~i~~c~l~~i~~~~~~~~   81 (238)
                      ++.++.+++.++++..   .+..+...  +.+.++.|++.++. +.. ....+..+++|+.|+++++.+..+...     
T Consensus         5 ~~~~l~~l~~l~~~~~---~l~~ip~~--~~~~l~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-----   73 (290)
T 1p9a_G            5 EVSKVASHLEVNCDKR---NLTALPPD--LPKDTTILHLSENL-LYTFSLATLMPYTRLTQLNLDRAELTKLQVD-----   73 (290)
T ss_dssp             EEECSTTCCEEECTTS---CCSSCCSC--CCTTCCEEECTTSC-CSEEEGGGGTTCTTCCEEECTTSCCCEEECC-----
T ss_pred             cccccCCccEEECCCC---CCCcCCCC--CCCCCCEEEcCCCc-CCccCHHHhhcCCCCCEEECCCCccCcccCC-----
Confidence            4567777877775422   22233221  23678899888764 232 234577788999999988876655432     


Q ss_pred             CcccccCCCCccEEEEecCCCCCcCcc-cccCCCccEEEEecccccceecccc--c----------cccccccccccccc
Q 026434           82 KKLFQSGFRSLNTVHVFYCQKAKDLTW-LVFVQNLKKLRIEFCDDVEEIIGVD--K----------LRDISEIIGSEHNF  148 (238)
Q Consensus        82 ~~~~~~~l~~L~~L~i~~C~~L~~l~~-~~~l~~L~~L~i~~C~~l~~l~~~~--~----------~~~~~~~~~~~~~~  148 (238)
                           ..+++|+.|+++++ +++.++. +..+++|++|+++++ ++..+....  .          .......+......
T Consensus        74 -----~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~l~~N-~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~  146 (290)
T 1p9a_G           74 -----GTLPVLGTLDLSHN-QLQSLPLLGQTLPALTVLDVSFN-RLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTP  146 (290)
T ss_dssp             -----SCCTTCCEEECCSS-CCSSCCCCTTTCTTCCEEECCSS-CCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTT
T ss_pred             -----CCCCcCCEEECCCC-cCCcCchhhccCCCCCEEECCCC-cCcccCHHHHcCCCCCCEEECCCCCCCccChhhccc
Confidence                 23445555555444 3444332 234444444444443 222221100  0          00000011023346


Q ss_pred             ccccceeeccccccccccCCCC-CCCCCccEEeEcCccCCCCCCCCCC
Q 026434          149 FAQLEYLTISWGINLKGVYPNP-LPFPKLKKIKVRGCRHLKKLPLNSS  195 (238)
Q Consensus       149 ~p~L~~L~L~~~~~L~~i~~~~-~~~~~L~~L~i~~C~~L~~lp~~~~  195 (238)
                      +++|+.|++.+. .+++++... ..+++|+.|+++++ +++.+|....
T Consensus       147 l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~L~~N-~l~~ip~~~~  192 (290)
T 1p9a_G          147 TPKLEKLSLANN-NLTELPAGLLNGLENLDTLLLQEN-SLYTIPKGFF  192 (290)
T ss_dssp             CTTCCEEECTTS-CCSCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTT
T ss_pred             ccCCCEEECCCC-cCCccCHHHhcCcCCCCEEECCCC-cCCccChhhc
Confidence            778888888765 467776544 45789999999886 4677876543

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=98.90  E-value=2e-08  Score=82.84  Aligned_cols=128  Identities=17%  Similarity=0.169  Sum_probs=67.8

Q ss_pred             cceeEEEEeecCCCCC-cccchhhcccCCeEEEeecCCceEEecccCccCcccccCCCCccEEEEecCCCCCcCcc--cc
Q 026434           34 SITQSVGVYQCRSPPF-NVFHLAYMENLQELELEYCNLEEMKIDSTDEVKKLFQSGFRSLNTVHVFYCQKAKDLTW--LV  110 (238)
Q Consensus        34 ~~L~~L~l~~c~~l~~-~~~~l~~l~~L~~L~i~~c~l~~i~~~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~--~~  110 (238)
                      ++|+.|++.++. +.. ....+..+++|++|+++++.+..+....        ...+++|+.|+++++ +++.++.  +.
T Consensus        85 ~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~--------~~~l~~L~~L~Ls~n-~l~~~~~~~~~  154 (270)
T 2o6q_A           85 KNLETLWVTDNK-LQALPIGVFDQLVNLAELRLDRNQLKSLPPRV--------FDSLTKLTYLSLGYN-ELQSLPKGVFD  154 (270)
T ss_dssp             TTCCEEECCSSC-CCCCCTTTTTTCSSCCEEECCSSCCCCCCTTT--------TTTCTTCCEEECCSS-CCCCCCTTTTT
T ss_pred             CCCCEEECCCCc-CCcCCHhHcccccCCCEEECCCCccCeeCHHH--------hCcCcCCCEEECCCC-cCCccCHhHcc
Confidence            456666666553 222 2223455666777776666644332111        234666677776665 4555543  45


Q ss_pred             cCCCccEEEEecccccceecccccccccccccccccccccccceeeccccccccccCCC-CCCCCCccEEeEcCcc
Q 026434          111 FVQNLKKLRIEFCDDVEEIIGVDKLRDISEIIGSEHNFFAQLEYLTISWGINLKGVYPN-PLPFPKLKKIKVRGCR  185 (238)
Q Consensus       111 ~l~~L~~L~i~~C~~l~~l~~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~~-~~~~~~L~~L~i~~C~  185 (238)
                      .+++|++|++.++ .+..+..            ..+..+++|++|++.++ .++.++.. ...+++|+.|++.+.|
T Consensus       155 ~l~~L~~L~L~~n-~l~~~~~------------~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~  216 (270)
T 2o6q_A          155 KLTSLKELRLYNN-QLKRVPE------------GAFDKLTELKTLKLDNN-QLKRVPEGAFDSLEKLKMLQLQENP  216 (270)
T ss_dssp             TCTTCCEEECCSS-CCSCCCT------------TTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CCcccceeEecCC-cCcEeCh------------hHhccCCCcCEEECCCC-cCCcCCHHHhccccCCCEEEecCCC
Confidence            5666777766665 2332211            12344566666666655 45555443 2345666666666554

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=98.90  E-value=3.9e-09  Score=93.46  Aligned_cols=111  Identities=13%  Similarity=0.015  Sum_probs=76.8

Q ss_pred             CCCcceeEEeeehHHHHhhhcCchhhcceeEEEEeecCCCCC-cccchhhcccCCeEEEeecCCceEEecccCccCcccc
Q 026434            8 KHLKVLSWSFGSSLAVQKFLKYPKLVSITQSVGVYQCRSPPF-NVFHLAYMENLQELELEYCNLEEMKIDSTDEVKKLFQ   86 (238)
Q Consensus         8 ~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~c~~l~~-~~~~l~~l~~L~~L~i~~c~l~~i~~~~~~~~~~~~~   86 (238)
                      .+|+.|++.......+.  .....-.++|+.|++.++. +.. ....+.++++|+.|++++|.+..+..+.        .
T Consensus        75 ~~l~~L~L~~n~i~~~~--~~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~--------~  143 (452)
T 3zyi_A           75 SNTRYLNLMENNIQMIQ--ADTFRHLHHLEVLQLGRNS-IRQIEVGAFNGLASLNTLELFDNWLTVIPSGA--------F  143 (452)
T ss_dssp             TTCSEEECCSSCCCEEC--TTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCSBCCTTT--------S
T ss_pred             CCccEEECcCCcCceEC--HHHcCCCCCCCEEECCCCc-cCCcChhhccCcccCCEEECCCCcCCccChhh--------h
Confidence            46777877533222211  1111223689999998874 333 3346788999999999999866553221        2


Q ss_pred             cCCCCccEEEEecCCCCCcCcc--cccCCCccEEEEecccccceec
Q 026434           87 SGFRSLNTVHVFYCQKAKDLTW--LVFVQNLKKLRIEFCDDVEEII  130 (238)
Q Consensus        87 ~~l~~L~~L~i~~C~~L~~l~~--~~~l~~L~~L~i~~C~~l~~l~  130 (238)
                      ..+++|+.|+++++ +++.++.  +..+++|++|++.+|..+..+.
T Consensus       144 ~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~  188 (452)
T 3zyi_A          144 EYLSKLRELWLRNN-PIESIPSYAFNRVPSLMRLDLGELKKLEYIS  188 (452)
T ss_dssp             SSCTTCCEEECCSC-CCCEECTTTTTTCTTCCEEECCCCTTCCEEC
T ss_pred             cccCCCCEEECCCC-CcceeCHhHHhcCCcccEEeCCCCCCccccC
Confidence            46899999999988 5777653  5689999999999998887764

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=98.89  E-value=1.8e-10  Score=97.69  Aligned_cols=109  Identities=17%  Similarity=0.201  Sum_probs=59.2

Q ss_pred             cccCCCcceeEEeee--hHHHHhhhcCchhhcceeEEEEeecCCCCC-cccchhhcccCCeEEEeecC-CceEEecccCc
Q 026434            5 LGLKHLKVLSWSFGS--SLAVQKFLKYPKLVSITQSVGVYQCRSPPF-NVFHLAYMENLQELELEYCN-LEEMKIDSTDE   80 (238)
Q Consensus         5 ~~L~~L~~L~i~~~~--~~~l~~l~~~~~l~~~L~~L~l~~c~~l~~-~~~~l~~l~~L~~L~i~~c~-l~~i~~~~~~~   80 (238)
                      ..+.+|+.|+++...  ...+...+..   .++|++|++.+|. +.. ....+.++++|++|++++|. +....+.    
T Consensus        90 ~~~~~L~~L~L~~~~l~~~~~~~~~~~---~~~L~~L~L~~~~-l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~----  161 (336)
T 2ast_B           90 FSPFRVQHMDLSNSVIEVSTLHGILSQ---CSKLQNLSLEGLR-LSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQ----  161 (336)
T ss_dssp             CCCBCCCEEECTTCEECHHHHHHHHTT---BCCCSEEECTTCB-CCHHHHHHHTTCTTCSEEECTTCBSCCHHHHH----
T ss_pred             ccCCCCCEEEccCCCcCHHHHHHHHhh---CCCCCEEeCcCcc-cCHHHHHHHhcCCCCCEEECCCCCCCCHHHHH----
Confidence            345677777764332  1223333332   2477777777773 332 23345567777777777774 5421000    


Q ss_pred             cCcccccCCCCccEEEEecCCCCCcC--c-ccccCC-CccEEEEeccc
Q 026434           81 VKKLFQSGFRSLNTVHVFYCQKAKDL--T-WLVFVQ-NLKKLRIEFCD  124 (238)
Q Consensus        81 ~~~~~~~~l~~L~~L~i~~C~~L~~l--~-~~~~l~-~L~~L~i~~C~  124 (238)
                         .....+++|+.|++++|.++++.  + .+..++ +|++|++.+|.
T Consensus       162 ---~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~  206 (336)
T 2ast_B          162 ---TLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYR  206 (336)
T ss_dssp             ---HHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCG
T ss_pred             ---HHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCc
Confidence               01134666777777776556542  2 244566 67777776664

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=98.88  E-value=2.1e-08  Score=81.79  Aligned_cols=146  Identities=13%  Similarity=0.156  Sum_probs=98.8

Q ss_pred             cceeEEEEeecCCCCC-cccchhhcccCCeEEEeecCCceEEecccCccCcccccCCCCccEEEEecCCCCCcCc--ccc
Q 026434           34 SITQSVGVYQCRSPPF-NVFHLAYMENLQELELEYCNLEEMKIDSTDEVKKLFQSGFRSLNTVHVFYCQKAKDLT--WLV  110 (238)
Q Consensus        34 ~~L~~L~l~~c~~l~~-~~~~l~~l~~L~~L~i~~c~l~~i~~~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~--~~~  110 (238)
                      ..++.|.+.++.- .. ....+.++++|++|+++++.+..+...        ....+++|+.|+++++ +++.++  .+.
T Consensus        35 ~~l~~L~L~~n~l-~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--------~~~~l~~L~~L~L~~n-~l~~~~~~~~~  104 (251)
T 3m19_A           35 ADTEKLDLQSTGL-ATLSDATFRGLTKLTWLNLDYNQLQTLSAG--------VFDDLTELGTLGLANN-QLASLPLGVFD  104 (251)
T ss_dssp             TTCCEEECTTSCC-CCCCTTTTTTCTTCCEEECTTSCCCCCCTT--------TTTTCTTCCEEECTTS-CCCCCCTTTTT
T ss_pred             CCCCEEEccCCCc-CccCHhHhcCcccCCEEECCCCcCCccCHh--------HhccCCcCCEEECCCC-cccccChhHhc
Confidence            5788999888752 22 223577889999999999885544221        1245788999999887 577765  346


Q ss_pred             cCCCccEEEEecccccceecccccccccccccccccccccccceeeccccccccccCCC-CCCCCCccEEeEcCccCCCC
Q 026434          111 FVQNLKKLRIEFCDDVEEIIGVDKLRDISEIIGSEHNFFAQLEYLTISWGINLKGVYPN-PLPFPKLKKIKVRGCRHLKK  189 (238)
Q Consensus       111 ~l~~L~~L~i~~C~~l~~l~~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~~-~~~~~~L~~L~i~~C~~L~~  189 (238)
                      .+++|++|++.++ .+..+..            .....+++|++|++++. +++++... ...+++|+.|+++++ +++.
T Consensus       105 ~l~~L~~L~L~~N-~l~~~~~------------~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~  169 (251)
T 3m19_A          105 HLTQLDKLYLGGN-QLKSLPS------------GVFDRLTKLKELRLNTN-QLQSIPAGAFDKLTNLQTLSLSTN-QLQS  169 (251)
T ss_dssp             TCTTCCEEECCSS-CCCCCCT------------TTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCSC
T ss_pred             ccCCCCEEEcCCC-cCCCcCh------------hHhccCCcccEEECcCC-cCCccCHHHcCcCcCCCEEECCCC-cCCc
Confidence            7889999999886 4544421            23456788888888876 56776653 346788899988887 5666


Q ss_pred             CCCCCCCCCCcceEE
Q 026434          190 LPLNSSSAKERRVVI  204 (238)
Q Consensus       190 lp~~~~~~~~~L~~~  204 (238)
                      +|........+|+.+
T Consensus       170 ~~~~~~~~l~~L~~L  184 (251)
T 3m19_A          170 VPHGAFDRLGKLQTI  184 (251)
T ss_dssp             CCTTTTTTCTTCCEE
T ss_pred             cCHHHHhCCCCCCEE
Confidence            665433333455554

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=98.88  E-value=4e-09  Score=86.99  Aligned_cols=147  Identities=14%  Similarity=0.172  Sum_probs=91.9

Q ss_pred             ccccCCCcceeEEeeehHHHHhhhcCchhhcceeEEEEeecCCCCCcccchhhcccCCeEEEeecCCceEEecccCccCc
Q 026434            4 LLGLKHLKVLSWSFGSSLAVQKFLKYPKLVSITQSVGVYQCRSPPFNVFHLAYMENLQELELEYCNLEEMKIDSTDEVKK   83 (238)
Q Consensus         4 L~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~c~~l~~~~~~l~~l~~L~~L~i~~c~l~~i~~~~~~~~~~   83 (238)
                      +..+.+|+.|++.......++.+    ...++|+.|++.++. +.. ++.+.++++|+.|++++|.++.+.         
T Consensus        37 ~~~l~~L~~L~l~~n~i~~l~~l----~~l~~L~~L~L~~N~-i~~-~~~l~~l~~L~~L~L~~N~l~~l~---------  101 (263)
T 1xeu_A           37 QKELSGVQNFNGDNSNIQSLAGM----QFFTNLKELHLSHNQ-ISD-LSPLKDLTKLEELSVNRNRLKNLN---------  101 (263)
T ss_dssp             HHHHTTCSEEECTTSCCCCCTTG----GGCTTCCEEECCSSC-CCC-CGGGTTCSSCCEEECCSSCCSCCT---------
T ss_pred             hhhcCcCcEEECcCCCcccchHH----hhCCCCCEEECCCCc-cCC-ChhhccCCCCCEEECCCCccCCcC---------
Confidence            34556666666543322222221    223567777777663 232 333667777777777777744331         


Q ss_pred             ccccCCCCccEEEEecCCCCCcCcccccCCCccEEEEecccccceecccccccccccccccccccccccceeeccccccc
Q 026434           84 LFQSGFRSLNTVHVFYCQKAKDLTWLVFVQNLKKLRIEFCDDVEEIIGVDKLRDISEIIGSEHNFFAQLEYLTISWGINL  163 (238)
Q Consensus        84 ~~~~~l~~L~~L~i~~C~~L~~l~~~~~l~~L~~L~i~~C~~l~~l~~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L  163 (238)
                       .... ++|+.|+++++ +++.++.+..+++|++|+++++ ++..+              ..+..+++|+.|+++++ .+
T Consensus       102 -~~~~-~~L~~L~L~~N-~l~~~~~l~~l~~L~~L~Ls~N-~i~~~--------------~~l~~l~~L~~L~L~~N-~i  162 (263)
T 1xeu_A          102 -GIPS-ACLSRLFLDNN-ELRDTDSLIHLKNLEILSIRNN-KLKSI--------------VMLGFLSKLEVLDLHGN-EI  162 (263)
T ss_dssp             -TCCC-SSCCEEECCSS-CCSBSGGGTTCTTCCEEECTTS-CCCBC--------------GGGGGCTTCCEEECTTS-CC
T ss_pred             -cccc-CcccEEEccCC-ccCCChhhcCcccccEEECCCC-cCCCC--------------hHHccCCCCCEEECCCC-cC
Confidence             1122 77888888887 6777777778888888888776 34433              23456788999998875 35


Q ss_pred             cccCCCCCCCCCccEEeEcCcc
Q 026434          164 KGVYPNPLPFPKLKKIKVRGCR  185 (238)
Q Consensus       164 ~~i~~~~~~~~~L~~L~i~~C~  185 (238)
                      +++ .....+++|+.|++++++
T Consensus       163 ~~~-~~l~~l~~L~~L~l~~N~  183 (263)
T 1xeu_A          163 TNT-GGLTRLKKVNWIDLTGQK  183 (263)
T ss_dssp             CBC-TTSTTCCCCCEEEEEEEE
T ss_pred             cch-HHhccCCCCCEEeCCCCc
Confidence            554 334567889999998775

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=98.87  E-value=1e-08  Score=91.02  Aligned_cols=159  Identities=14%  Similarity=0.175  Sum_probs=81.0

Q ss_pred             cccccCCCcceeEEeeehHHHHhhhcCchhhcceeEEEEeecCCCCCcccchhhcccCCeEEEeecCCceEE--------
Q 026434            3 ELLGLKHLKVLSWSFGSSLAVQKFLKYPKLVSITQSVGVYQCRSPPFNVFHLAYMENLQELELEYCNLEEMK--------   74 (238)
Q Consensus         3 eL~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~c~~l~~~~~~l~~l~~L~~L~i~~c~l~~i~--------   74 (238)
                      .+..+.+|+.|++..........    ....++|+.|++.++. +. .+..+..+++|+.|++++|.+..+.        
T Consensus       194 ~l~~l~~L~~L~l~~n~l~~~~~----~~~l~~L~~L~l~~n~-l~-~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L  267 (466)
T 1o6v_A          194 VLAKLTNLESLIATNNQISDITP----LGILTNLDELSLNGNQ-LK-DIGTLASLTNLTDLDLANNQISNLAPLSGLTKL  267 (466)
T ss_dssp             GGGGCTTCSEEECCSSCCCCCGG----GGGCTTCCEEECCSSC-CC-CCGGGGGCTTCSEEECCSSCCCCCGGGTTCTTC
T ss_pred             hhccCCCCCEEEecCCccccccc----ccccCCCCEEECCCCC-cc-cchhhhcCCCCCEEECCCCccccchhhhcCCCC
Confidence            35667788888775433222211    1223578888887764 22 2455667777888877776633221        


Q ss_pred             ----ecccCccCcccccCCCCccEEEEecCCCCCcCcccccCCCccEEEEecccccceeccccccccccccccccccccc
Q 026434           75 ----IDSTDEVKKLFQSGFRSLNTVHVFYCQKAKDLTWLVFVQNLKKLRIEFCDDVEEIIGVDKLRDISEIIGSEHNFFA  150 (238)
Q Consensus        75 ----~~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~l~~L~~L~i~~C~~l~~l~~~~~~~~~~~~~~~~~~~~p  150 (238)
                          +........+....+++|+.|++++| +++.++.+..+++|++|++.+| .+..+              .....++
T Consensus       268 ~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~l~~L~~L~L~~n-~l~~~--------------~~~~~l~  331 (466)
T 1o6v_A          268 TELKLGANQISNISPLAGLTALTNLELNEN-QLEDISPISNLKNLTYLTLYFN-NISDI--------------SPVSSLT  331 (466)
T ss_dssp             SEEECCSSCCCCCGGGTTCTTCSEEECCSS-CCSCCGGGGGCTTCSEEECCSS-CCSCC--------------GGGGGCT
T ss_pred             CEEECCCCccCccccccCCCccCeEEcCCC-cccCchhhcCCCCCCEEECcCC-cCCCc--------------hhhccCc
Confidence                10000000111334555566666555 3555554555666666666555 22222              1233456


Q ss_pred             ccceeeccccccccccCCCCCCCCCccEEeEcCcc
Q 026434          151 QLEYLTISWGINLKGVYPNPLPFPKLKKIKVRGCR  185 (238)
Q Consensus       151 ~L~~L~L~~~~~L~~i~~~~~~~~~L~~L~i~~C~  185 (238)
                      +|+.|++.++ .++++. ....+++|+.|++++|.
T Consensus       332 ~L~~L~l~~n-~l~~~~-~l~~l~~L~~L~l~~n~  364 (466)
T 1o6v_A          332 KLQRLFFYNN-KVSDVS-SLANLTNINWLSAGHNQ  364 (466)
T ss_dssp             TCCEEECCSS-CCCCCG-GGTTCTTCCEEECCSSC
T ss_pred             cCCEeECCCC-ccCCch-hhccCCCCCEEeCCCCc
Confidence            6666666654 333331 22345566666666554

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=98.87  E-value=3e-08  Score=88.05  Aligned_cols=165  Identities=16%  Similarity=0.155  Sum_probs=88.6

Q ss_pred             ccccCCCcceeEEeeehHHHHhhhcCchhhcceeEEEEeecCCCCC-cccchhhcccCCeEEEeecCCceEEecccCccC
Q 026434            4 LLGLKHLKVLSWSFGSSLAVQKFLKYPKLVSITQSVGVYQCRSPPF-NVFHLAYMENLQELELEYCNLEEMKIDSTDEVK   82 (238)
Q Consensus         4 L~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~c~~l~~-~~~~l~~l~~L~~L~i~~c~l~~i~~~~~~~~~   82 (238)
                      +..+.+|+.|++.......+.  .....-.++|+.|++.++. +.. ....+.++++|+.|+++++.+..+....     
T Consensus       124 ~~~l~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~l~~n~-l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~-----  195 (477)
T 2id5_A          124 FQDLYNLKSLEVGDNDLVYIS--HRAFSGLNSLEQLTLEKCN-LTSIPTEALSHLHGLIVLRLRHLNINAIRDYS-----  195 (477)
T ss_dssp             TTTCTTCCEEEECCTTCCEEC--TTSSTTCTTCCEEEEESCC-CSSCCHHHHTTCTTCCEEEEESCCCCEECTTC-----
T ss_pred             ccccccCCEEECCCCccceeC--hhhccCCCCCCEEECCCCc-CcccChhHhcccCCCcEEeCCCCcCcEeChhh-----
Confidence            566778888877532111110  0011122577888887763 232 2223566777777777776644332111     


Q ss_pred             cccccCCCCccEEEEecCC-----------------------CCCcCc--ccccCCCccEEEEecccccceecccccccc
Q 026434           83 KLFQSGFRSLNTVHVFYCQ-----------------------KAKDLT--WLVFVQNLKKLRIEFCDDVEEIIGVDKLRD  137 (238)
Q Consensus        83 ~~~~~~l~~L~~L~i~~C~-----------------------~L~~l~--~~~~l~~L~~L~i~~C~~l~~l~~~~~~~~  137 (238)
                         ...+++|+.|++++|.                       +++.++  .+..+++|++|+++++. +..+..      
T Consensus       196 ---~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~------  265 (477)
T 2id5_A          196 ---FKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNP-ISTIEG------  265 (477)
T ss_dssp             ---SCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSC-CCEECT------
T ss_pred             ---cccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCc-CCccCh------
Confidence               1234444444444443                       344443  23455556666655542 322211      


Q ss_pred             cccccccccccccccceeeccccccccccCC-CCCCCCCccEEeEcCccCCCCCCCCC
Q 026434          138 ISEIIGSEHNFFAQLEYLTISWGINLKGVYP-NPLPFPKLKKIKVRGCRHLKKLPLNS  194 (238)
Q Consensus       138 ~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~-~~~~~~~L~~L~i~~C~~L~~lp~~~  194 (238)
                            ..+..+++|+.|+|.++ .++.+.. ....+++|+.|+++++ +++.+|...
T Consensus       266 ------~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~  315 (477)
T 2id5_A          266 ------SMLHELLRLQEIQLVGG-QLAVVEPYAFRGLNYLRVLNVSGN-QLTTLEESV  315 (477)
T ss_dssp             ------TSCTTCTTCCEEECCSS-CCSEECTTTBTTCTTCCEEECCSS-CCSCCCGGG
T ss_pred             ------hhccccccCCEEECCCC-ccceECHHHhcCcccCCEEECCCC-cCceeCHhH
Confidence                  33456788888888765 3555533 3446788999998887 567776543

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=98.86  E-value=1.2e-08  Score=77.98  Aligned_cols=135  Identities=14%  Similarity=0.090  Sum_probs=97.3

Q ss_pred             hcceeEEEEeecCCCC-Ccccc-hhhcccCCeEEEeecCCceEEecccCccCcccccCCCCccEEEEecCCCCCc-Cccc
Q 026434           33 VSITQSVGVYQCRSPP-FNVFH-LAYMENLQELELEYCNLEEMKIDSTDEVKKLFQSGFRSLNTVHVFYCQKAKD-LTWL  109 (238)
Q Consensus        33 ~~~L~~L~l~~c~~l~-~~~~~-l~~l~~L~~L~i~~c~l~~i~~~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~-l~~~  109 (238)
                      .++++.|++.+|. +. ..++. +..+++|+.|++++|.+..+  .        ....+++|+.|+++++ ++.. ++..
T Consensus        23 ~~~L~~L~l~~n~-l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~--------~~~~l~~L~~L~Ls~N-~l~~~~~~~   90 (168)
T 2ell_A           23 PAAVRELVLDNCK-SNDGKIEGLTAEFVNLEFLSLINVGLISV--S--------NLPKLPKLKKLELSEN-RIFGGLDML   90 (168)
T ss_dssp             TTSCSEEECCSCB-CBTTBCSSCCGGGGGCCEEEEESSCCCCC--S--------SCCCCSSCCEEEEESC-CCCSCCCHH
T ss_pred             cccCCEEECCCCC-CChhhHHHHHHhCCCCCEEeCcCCCCCCh--h--------hhccCCCCCEEECcCC-cCchHHHHH
Confidence            3689999999986 33 12333 57899999999999986544  1        2346899999999998 5666 5543


Q ss_pred             -ccCCCccEEEEecccccceecccccccccccccccccccccccceeeccccccccccCC----CCCCCCCccEEeEcCc
Q 026434          110 -VFVQNLKKLRIEFCDDVEEIIGVDKLRDISEIIGSEHNFFAQLEYLTISWGINLKGVYP----NPLPFPKLKKIKVRGC  184 (238)
Q Consensus       110 -~~l~~L~~L~i~~C~~l~~l~~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~----~~~~~~~L~~L~i~~C  184 (238)
                       ..+++|++|++.++ .+..+...           ..+..+++|++|++.++ .+..++.    ....+++|+.|++.+|
T Consensus        91 ~~~l~~L~~L~Ls~N-~l~~~~~~-----------~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~~n  157 (168)
T 2ell_A           91 AEKLPNLTHLNLSGN-KLKDISTL-----------EPLKKLECLKSLDLFNC-EVTNLNDYRESVFKLLPQLTYLDGYDR  157 (168)
T ss_dssp             HHHCTTCCEEECBSS-SCCSSGGG-----------GGGSSCSCCCEEECCSS-GGGTSTTHHHHHHTTCSSCCEETTEET
T ss_pred             HhhCCCCCEEeccCC-ccCcchhH-----------HHHhcCCCCCEEEeeCC-cCcchHHHHHHHHHhCccCcEecCCCC
Confidence             45999999999988 45443210           24457899999999877 3555543    2456899999999998


Q ss_pred             cCCCCCCCC
Q 026434          185 RHLKKLPLN  193 (238)
Q Consensus       185 ~~L~~lp~~  193 (238)
                      + ++.+|..
T Consensus       158 ~-~~~~~~~  165 (168)
T 2ell_A          158 E-DQEAPDS  165 (168)
T ss_dssp             T-SCBCCSS
T ss_pred             C-hhhcccc
Confidence            5 4556644

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=98.86  E-value=6.7e-09  Score=92.27  Aligned_cols=83  Identities=11%  Similarity=0.259  Sum_probs=65.5

Q ss_pred             ccCCCCccEEEEecCCCCCcCcccccCCCccEEEEecccccceecccccccccccccccccccccccceeeccccccccc
Q 026434           86 QSGFRSLNTVHVFYCQKAKDLTWLVFVQNLKKLRIEFCDDVEEIIGVDKLRDISEIIGSEHNFFAQLEYLTISWGINLKG  165 (238)
Q Consensus        86 ~~~l~~L~~L~i~~C~~L~~l~~~~~l~~L~~L~i~~C~~l~~l~~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~  165 (238)
                      ...+++|+.|++++| ++..++.+..+++|++|++.+| .+..+              ..+..+++|+.|++.++. +.+
T Consensus       305 ~~~l~~L~~L~L~~n-~l~~~~~~~~l~~L~~L~l~~n-~l~~~--------------~~l~~l~~L~~L~l~~n~-l~~  367 (466)
T 1o6v_A          305 ISNLKNLTYLTLYFN-NISDISPVSSLTKLQRLFFYNN-KVSDV--------------SSLANLTNINWLSAGHNQ-ISD  367 (466)
T ss_dssp             GGGCTTCSEEECCSS-CCSCCGGGGGCTTCCEEECCSS-CCCCC--------------GGGTTCTTCCEEECCSSC-CCB
T ss_pred             hcCCCCCCEEECcCC-cCCCchhhccCccCCEeECCCC-ccCCc--------------hhhccCCCCCEEeCCCCc-cCc
Confidence            467899999999998 6888777889999999999998 44443              244568999999998874 454


Q ss_pred             cCCCCCCCCCccEEeEcCccC
Q 026434          166 VYPNPLPFPKLKKIKVRGCRH  186 (238)
Q Consensus       166 i~~~~~~~~~L~~L~i~~C~~  186 (238)
                      +.. ...+++|+.|++.+|+-
T Consensus       368 ~~~-~~~l~~L~~L~l~~n~~  387 (466)
T 1o6v_A          368 LTP-LANLTRITQLGLNDQAW  387 (466)
T ss_dssp             CGG-GTTCTTCCEEECCCEEE
T ss_pred             cch-hhcCCCCCEEeccCCcc
Confidence            443 56789999999999853

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=98.86  E-value=6.5e-10  Score=94.20  Aligned_cols=158  Identities=18%  Similarity=0.141  Sum_probs=106.5

Q ss_pred             ccccCCCcceeEEeeeh--HHHHhhhcCchhhcceeEEEEeecCCCCC-cccc-hhhcccCCeEEEeecC-CceEEeccc
Q 026434            4 LLGLKHLKVLSWSFGSS--LAVQKFLKYPKLVSITQSVGVYQCRSPPF-NVFH-LAYMENLQELELEYCN-LEEMKIDST   78 (238)
Q Consensus         4 L~~L~~L~~L~i~~~~~--~~l~~l~~~~~l~~~L~~L~l~~c~~l~~-~~~~-l~~l~~L~~L~i~~c~-l~~i~~~~~   78 (238)
                      +..+.+|+.|++.....  .....+..    .++|+.|++.+|..+.. .++. +.++++|++|++++|. +....+.  
T Consensus       114 ~~~~~~L~~L~L~~~~l~~~~~~~l~~----~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~--  187 (336)
T 2ast_B          114 LSQCSKLQNLSLEGLRLSDPIVNTLAK----NSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQ--  187 (336)
T ss_dssp             HTTBCCCSEEECTTCBCCHHHHHHHTT----CTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHH--
T ss_pred             HhhCCCCCEEeCcCcccCHHHHHHHhc----CCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHH--
Confidence            56788999999864432  23333333    36899999999976654 2343 6789999999999994 6532110  


Q ss_pred             CccCcccccCCC-CccEEEEecCC-CCCc--Cc-ccccCCCccEEEEecccccceecccccccccccccccccccccccc
Q 026434           79 DEVKKLFQSGFR-SLNTVHVFYCQ-KAKD--LT-WLVFVQNLKKLRIEFCDDVEEIIGVDKLRDISEIIGSEHNFFAQLE  153 (238)
Q Consensus        79 ~~~~~~~~~~l~-~L~~L~i~~C~-~L~~--l~-~~~~l~~L~~L~i~~C~~l~~l~~~~~~~~~~~~~~~~~~~~p~L~  153 (238)
                           .....++ +|+.|++++|. .+++  ++ .+..+++|++|++.+|..+.....            ..+..+++|+
T Consensus       188 -----~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~------------~~l~~l~~L~  250 (336)
T 2ast_B          188 -----VAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCF------------QEFFQLNYLQ  250 (336)
T ss_dssp             -----HHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGG------------GGGGGCTTCC
T ss_pred             -----HHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHH------------HHHhCCCCCC
Confidence                 1124578 99999999986 4543  22 345789999999999865442211            3445678999


Q ss_pred             eeeccccccccccCC-CCCCCCCccEEeEcCc
Q 026434          154 YLTISWGINLKGVYP-NPLPFPKLKKIKVRGC  184 (238)
Q Consensus       154 ~L~L~~~~~L~~i~~-~~~~~~~L~~L~i~~C  184 (238)
                      +|++.+|..+..-.. ....+++|+.|++.+|
T Consensus       251 ~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~  282 (336)
T 2ast_B          251 HLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  282 (336)
T ss_dssp             EEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             EeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence            999998874433211 1335889999999988

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=98.82  E-value=3.9e-08  Score=81.48  Aligned_cols=57  Identities=11%  Similarity=0.085  Sum_probs=33.8

Q ss_pred             cccccccceeeccccccccccCCC-CCCCCCccEEeEcCccCCCCCCCCCCCCCCcceEE
Q 026434          146 HNFFAQLEYLTISWGINLKGVYPN-PLPFPKLKKIKVRGCRHLKKLPLNSSSAKERRVVI  204 (238)
Q Consensus       146 ~~~~p~L~~L~L~~~~~L~~i~~~-~~~~~~L~~L~i~~C~~L~~lp~~~~~~~~~L~~~  204 (238)
                      +..+++|++|++.++ +++++... ...+++|+.|++.++. ++.++...-....+|+.+
T Consensus       149 ~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L  206 (285)
T 1ozn_A          149 FRDLGNLTHLFLHGN-RISSVPERAFRGLHSLDRLLLHQNR-VAHVHPHAFRDLGRLMTL  206 (285)
T ss_dssp             TTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEE
T ss_pred             hccCCCccEEECCCC-cccccCHHHhcCccccCEEECCCCc-ccccCHhHccCcccccEe
Confidence            456778888888765 46666543 3457888888888874 444432222222445544

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=98.81  E-value=2.5e-09  Score=97.78  Aligned_cols=59  Identities=12%  Similarity=0.028  Sum_probs=39.6

Q ss_pred             cccccccccceeecccccccccc-CCCCCCCCCccEEeEcCccCCCCCCCCCCCCCCcceEE
Q 026434          144 SEHNFFAQLEYLTISWGINLKGV-YPNPLPFPKLKKIKVRGCRHLKKLPLNSSSAKERRVVI  204 (238)
Q Consensus       144 ~~~~~~p~L~~L~L~~~~~L~~i-~~~~~~~~~L~~L~i~~C~~L~~lp~~~~~~~~~L~~~  204 (238)
                      ..+..+++|++|+++++ +++++ +.....+++|+.|++++|. ++.+|..-...+.+|+.+
T Consensus       491 ~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~p~~~~~l~~~L~~l  550 (606)
T 3vq2_A          491 GVFDTLHRLQLLNMSHN-NLLFLDSSHYNQLYSLSTLDCSFNR-IETSKGILQHFPKSLAFF  550 (606)
T ss_dssp             TTTTTCTTCCEEECCSS-CCSCEEGGGTTTCTTCCEEECTTSC-CCCEESCGGGSCTTCCEE
T ss_pred             hhhcccccCCEEECCCC-cCCCcCHHHccCCCcCCEEECCCCc-CcccCHhHhhhcccCcEE
Confidence            34567888999999877 45544 3334568899999999985 788887633222345544

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=98.80  E-value=2e-08  Score=86.95  Aligned_cols=181  Identities=16%  Similarity=0.175  Sum_probs=97.7

Q ss_pred             ccccCCCcceeEEeeehHHHHhhhcCchhhcceeEEEEeecCCCCCcccchhhcccCCeEEEeecCCceEEecccCc---
Q 026434            4 LLGLKHLKVLSWSFGSSLAVQKFLKYPKLVSITQSVGVYQCRSPPFNVFHLAYMENLQELELEYCNLEEMKIDSTDE---   80 (238)
Q Consensus         4 L~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~c~~l~~~~~~l~~l~~L~~L~i~~c~l~~i~~~~~~~---   80 (238)
                      +..+.+|+.|++.......+.  .....-.++|+.|++.++. +..  ..+..+++|+.|+++++.+..+.....-.   
T Consensus       137 ~~~l~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~l~~n~-l~~--~~~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~  211 (390)
T 3o6n_A          137 FHNTPKLTTLSMSNNNLERIE--DDTFQATTSLQNLQLSSNR-LTH--VDLSLIPSLFHANVSYNLLSTLAIPIAVEELD  211 (390)
T ss_dssp             TTTCTTCCEEECCSSCCCBCC--TTTTSSCTTCCEEECCSSC-CSB--CCGGGCTTCSEEECCSSCCSEEECCSSCSEEE
T ss_pred             hcCCCCCcEEECCCCccCccC--hhhccCCCCCCEEECCCCc-CCc--cccccccccceeecccccccccCCCCcceEEE
Confidence            467888999987643222111  1111223678999988864 222  23455667777777665533332110000   


Q ss_pred             -----cCcccccCCCCccEEEEecCCCCCcCcccccCCCccEEEEecccccceeccccc--c----------cccccccc
Q 026434           81 -----VKKLFQSGFRSLNTVHVFYCQKAKDLTWLVFVQNLKKLRIEFCDDVEEIIGVDK--L----------RDISEIIG  143 (238)
Q Consensus        81 -----~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~l~~L~~L~i~~C~~l~~l~~~~~--~----------~~~~~~~~  143 (238)
                           ........+++|+.|+++++ +++..+++..+++|++|+++++ .+..+.+..-  .          ....+.+ 
T Consensus       212 l~~n~l~~~~~~~~~~L~~L~l~~n-~l~~~~~l~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-  288 (390)
T 3o6n_A          212 ASHNSINVVRGPVNVELTILKLQHN-NLTDTAWLLNYPGLVEVDLSYN-ELEKIMYHPFVKMQRLERLYISNNRLVALN-  288 (390)
T ss_dssp             CCSSCCCEEECCCCSSCCEEECCSS-CCCCCGGGGGCTTCSEEECCSS-CCCEEESGGGTTCSSCCEEECCSSCCCEEE-
T ss_pred             CCCCeeeeccccccccccEEECCCC-CCcccHHHcCCCCccEEECCCC-cCCCcChhHccccccCCEEECCCCcCcccC-
Confidence                 00011233567888888776 5666677777788888888776 3333321100  0          0000010 


Q ss_pred             cccccccccceeeccccccccccCCCCCCCCCccEEeEcCccCCCCCCCCC
Q 026434          144 SEHNFFAQLEYLTISWGINLKGVYPNPLPFPKLKKIKVRGCRHLKKLPLNS  194 (238)
Q Consensus       144 ~~~~~~p~L~~L~L~~~~~L~~i~~~~~~~~~L~~L~i~~C~~L~~lp~~~  194 (238)
                      .....+|+|+.|+++++ .++.++.....+++|+.|++++++ ++.+|...
T Consensus       289 ~~~~~l~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~  337 (390)
T 3o6n_A          289 LYGQPIPTLKVLDLSHN-HLLHVERNQPQFDRLENLYLDHNS-IVTLKLST  337 (390)
T ss_dssp             CSSSCCTTCCEEECCSS-CCCCCGGGHHHHTTCSEEECCSSC-CCCCCCCT
T ss_pred             cccCCCCCCCEEECCCC-cceecCccccccCcCCEEECCCCc-cceeCchh
Confidence            22345677777777766 455554444456788888888875 56666443

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=98.79  E-value=1e-08  Score=86.55  Aligned_cols=81  Identities=16%  Similarity=0.133  Sum_probs=36.5

Q ss_pred             CCCccEEEEecCCCCCcCcccccCCCccEEEEecccccceecccccccccccccccccccccccceeeccccccccccCC
Q 026434           89 FRSLNTVHVFYCQKAKDLTWLVFVQNLKKLRIEFCDDVEEIIGVDKLRDISEIIGSEHNFFAQLEYLTISWGINLKGVYP  168 (238)
Q Consensus        89 l~~L~~L~i~~C~~L~~l~~~~~l~~L~~L~i~~C~~l~~l~~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~  168 (238)
                      +++|+.|+++++ +++.++....+++|++|+++++ .+..+.             ..+..+++|+.|+++++ .++.++.
T Consensus       168 l~~L~~L~L~~N-~l~~~~~~~~l~~L~~L~Ls~N-~l~~l~-------------~~~~~l~~L~~L~L~~N-~l~~l~~  231 (317)
T 3o53_A          168 SDTLEHLNLQYN-FIYDVKGQVVFAKLKTLDLSSN-KLAFMG-------------PEFQSAAGVTWISLRNN-KLVLIEK  231 (317)
T ss_dssp             TTTCCEEECTTS-CCCEEECCCCCTTCCEEECCSS-CCCEEC-------------GGGGGGTTCSEEECTTS-CCCEECT
T ss_pred             cCcCCEEECCCC-cCcccccccccccCCEEECCCC-cCCcch-------------hhhcccCcccEEECcCC-cccchhh
Confidence            344555555444 3444433334455555555444 222221             12334455555555544 3444444


Q ss_pred             CCCCCCCccEEeEcCcc
Q 026434          169 NPLPFPKLKKIKVRGCR  185 (238)
Q Consensus       169 ~~~~~~~L~~L~i~~C~  185 (238)
                      ....+++|+.|++.+++
T Consensus       232 ~~~~l~~L~~L~l~~N~  248 (317)
T 3o53_A          232 ALRFSQNLEHFDLRGNG  248 (317)
T ss_dssp             TCCCCTTCCEEECTTCC
T ss_pred             HhhcCCCCCEEEccCCC
Confidence            33444555555555543

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=98.78  E-value=2.1e-08  Score=82.75  Aligned_cols=154  Identities=14%  Similarity=0.186  Sum_probs=75.2

Q ss_pred             cceeEEEEeecCCCCC-cccchhhcccCCeEEEeecCCceEEecccCcc----------------CcccccCCCCccEEE
Q 026434           34 SITQSVGVYQCRSPPF-NVFHLAYMENLQELELEYCNLEEMKIDSTDEV----------------KKLFQSGFRSLNTVH   96 (238)
Q Consensus        34 ~~L~~L~l~~c~~l~~-~~~~l~~l~~L~~L~i~~c~l~~i~~~~~~~~----------------~~~~~~~l~~L~~L~   96 (238)
                      ++|+.|++.++. +.. ....+.++++|+.|+++++.+..+..+.....                .......+++|+.|+
T Consensus        52 ~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  130 (276)
T 2z62_A           52 PELQVLDLSRCE-IQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELN  130 (276)
T ss_dssp             TTCSEEECTTCC-CCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEE
T ss_pred             cCCcEEECCCCc-CCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEE
Confidence            567777777763 232 22245667777777777776444432211100                001123445555555


Q ss_pred             EecCCCCCc--Cc-ccccCCCccEEEEecccccceecccccccccccccccccccccccc----eeeccccccccccCCC
Q 026434           97 VFYCQKAKD--LT-WLVFVQNLKKLRIEFCDDVEEIIGVDKLRDISEIIGSEHNFFAQLE----YLTISWGINLKGVYPN  169 (238)
Q Consensus        97 i~~C~~L~~--l~-~~~~l~~L~~L~i~~C~~l~~l~~~~~~~~~~~~~~~~~~~~p~L~----~L~L~~~~~L~~i~~~  169 (238)
                      ++++ +++.  ++ .+..+++|++|++.++ .+..+..            ..+..+++|+    +|++++. .++.+...
T Consensus       131 l~~n-~l~~~~l~~~~~~l~~L~~L~Ls~N-~l~~~~~------------~~~~~l~~L~~l~l~L~ls~n-~l~~~~~~  195 (276)
T 2z62_A          131 VAHN-LIQSFKLPEYFSNLTNLEHLDLSSN-KIQSIYC------------TDLRVLHQMPLLNLSLDLSLN-PMNFIQPG  195 (276)
T ss_dssp             CCSS-CCCCCCCCGGGGGCTTCCEEECCSS-CCCEECG------------GGGHHHHTCTTCCEEEECCSS-CCCEECTT
T ss_pred             CcCC-ccceecCchhhccCCCCCEEECCCC-CCCcCCH------------HHhhhhhhccccceeeecCCC-cccccCcc
Confidence            5554 2333  11 3444555555555554 2222211            1222333444    4444432 34445444


Q ss_pred             CCCCCCccEEeEcCccCCCCCCCCCCCCCCcceEE
Q 026434          170 PLPFPKLKKIKVRGCRHLKKLPLNSSSAKERRVVI  204 (238)
Q Consensus       170 ~~~~~~L~~L~i~~C~~L~~lp~~~~~~~~~L~~~  204 (238)
                      .....+|+.|+++++. ++.+|........+|+.+
T Consensus       196 ~~~~~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L  229 (276)
T 2z62_A          196 AFKEIRLKELALDTNQ-LKSVPDGIFDRLTSLQKI  229 (276)
T ss_dssp             SSCSCCEEEEECCSSC-CSCCCTTTTTTCCSCCEE
T ss_pred             ccCCCcccEEECCCCc-eeecCHhHhcccccccEE
Confidence            4445578888888875 777775543323445544

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=98.76  E-value=7.5e-08  Score=84.75  Aligned_cols=59  Identities=20%  Similarity=0.273  Sum_probs=40.5

Q ss_pred             cccccccccceeeccccccccccCC-CCCCCCCccEEeEcCccCCCCCCCCCCCCCCcceEE
Q 026434          144 SEHNFFAQLEYLTISWGINLKGVYP-NPLPFPKLKKIKVRGCRHLKKLPLNSSSAKERRVVI  204 (238)
Q Consensus       144 ~~~~~~p~L~~L~L~~~~~L~~i~~-~~~~~~~L~~L~i~~C~~L~~lp~~~~~~~~~L~~~  204 (238)
                      ..+..+++|++|+++++ .++.+.. ....+++|+.|+++++ +++.+|........+|+.+
T Consensus       341 ~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L  400 (455)
T 3v47_A          341 RMFENLDKLEVLDLSYN-HIRALGDQSFLGLPNLKELALDTN-QLKSVPDGIFDRLTSLQKI  400 (455)
T ss_dssp             GGGTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEE
T ss_pred             hHhcCcccCCEEECCCC-cccccChhhccccccccEEECCCC-ccccCCHhHhccCCcccEE
Confidence            34556788888888876 4555533 4456899999999996 5777886543334556555

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=98.76  E-value=8.9e-09  Score=94.06  Aligned_cols=86  Identities=14%  Similarity=0.145  Sum_probs=60.7

Q ss_pred             cCCCCccEEEEecCCCCCcCc--ccccCCCccEEEEecccccceecccccccccccccccccccccccceeecccccccc
Q 026434           87 SGFRSLNTVHVFYCQKAKDLT--WLVFVQNLKKLRIEFCDDVEEIIGVDKLRDISEIIGSEHNFFAQLEYLTISWGINLK  164 (238)
Q Consensus        87 ~~l~~L~~L~i~~C~~L~~l~--~~~~l~~L~~L~i~~C~~l~~l~~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~  164 (238)
                      ..+++|+.|++++| +++.++  .+..+++|++|++++| .+..+++            ..+..+++|+.|+++++. ++
T Consensus       470 ~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~------------~~~~~l~~L~~L~l~~N~-l~  534 (606)
T 3vq2_A          470 ANTTNLTFLDLSKC-QLEQISWGVFDTLHRLQLLNMSHN-NLLFLDS------------SHYNQLYSLSTLDCSFNR-IE  534 (606)
T ss_dssp             TTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSS-CCSCEEG------------GGTTTCTTCCEEECTTSC-CC
T ss_pred             ccCCCCCEEECCCC-cCCccChhhhcccccCCEEECCCC-cCCCcCH------------HHccCCCcCCEEECCCCc-Cc
Confidence            45677777777777 455543  3566777888877777 3433322            455678999999999885 88


Q ss_pred             ccCCCCCCCC-CccEEeEcCccCC
Q 026434          165 GVYPNPLPFP-KLKKIKVRGCRHL  187 (238)
Q Consensus       165 ~i~~~~~~~~-~L~~L~i~~C~~L  187 (238)
                      .++.....++ +|+.|++.++|-.
T Consensus       535 ~~p~~~~~l~~~L~~l~l~~N~~~  558 (606)
T 3vq2_A          535 TSKGILQHFPKSLAFFNLTNNSVA  558 (606)
T ss_dssp             CEESCGGGSCTTCCEEECCSCCCC
T ss_pred             ccCHhHhhhcccCcEEEccCCCcc
Confidence            8877666676 5999999987654

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=98.75  E-value=7.6e-08  Score=76.05  Aligned_cols=131  Identities=15%  Similarity=0.056  Sum_probs=90.2

Q ss_pred             hcceeEEEEeecCCCCC-cccchhhcccCCeEEEeecCCceEEecccCccCcccccCCCCccEEEEecCCCCCcCcc--c
Q 026434           33 VSITQSVGVYQCRSPPF-NVFHLAYMENLQELELEYCNLEEMKIDSTDEVKKLFQSGFRSLNTVHVFYCQKAKDLTW--L  109 (238)
Q Consensus        33 ~~~L~~L~l~~c~~l~~-~~~~l~~l~~L~~L~i~~c~l~~i~~~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~--~  109 (238)
                      .++++.|++.++. +.. ....+.++++|++|+++++.++.+....        ...+++|+.|+++++ +++.++.  +
T Consensus        27 ~~~l~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~--------~~~l~~L~~L~Ls~n-~l~~~~~~~~   96 (208)
T 2o6s_A           27 PAQTTYLDLETNS-LKSLPNGVFDELTSLTQLYLGGNKLQSLPNGV--------FNKLTSLTYLNLSTN-QLQSLPNGVF   96 (208)
T ss_dssp             CTTCSEEECCSSC-CCCCCTTTTTTCTTCSEEECCSSCCCCCCTTT--------TTTCTTCCEEECCSS-CCCCCCTTTT
T ss_pred             CCCCcEEEcCCCc-cCcCChhhhcccccCcEEECCCCccCccChhh--------cCCCCCcCEEECCCC-cCCccCHhHh
Confidence            3578899988874 233 2223677889999999988865442211        245788999999887 5777654  5


Q ss_pred             ccCCCccEEEEecccccceecccccccccccccccccccccccceeeccccccccccCCC-CCCCCCccEEeEcCccCC
Q 026434          110 VFVQNLKKLRIEFCDDVEEIIGVDKLRDISEIIGSEHNFFAQLEYLTISWGINLKGVYPN-PLPFPKLKKIKVRGCRHL  187 (238)
Q Consensus       110 ~~l~~L~~L~i~~C~~l~~l~~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~~-~~~~~~L~~L~i~~C~~L  187 (238)
                      ..+++|++|++.++ .+..+..            .....+++|++|++.+. .++.+... ...+++|+.|++.+++-.
T Consensus        97 ~~l~~L~~L~L~~N-~l~~~~~------------~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~~  161 (208)
T 2o6s_A           97 DKLTQLKELALNTN-QLQSLPD------------GVFDKLTQLKDLRLYQN-QLKSVPDGVFDRLTSLQYIWLHDNPWD  161 (208)
T ss_dssp             TTCTTCCEEECCSS-CCCCCCT------------TTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSCCBC
T ss_pred             cCccCCCEEEcCCC-cCcccCH------------hHhccCCcCCEEECCCC-ccceeCHHHhccCCCccEEEecCCCee
Confidence            67899999999876 3444321            23456789999999875 46666554 345789999999886433

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=98.75  E-value=2.9e-08  Score=88.27  Aligned_cols=100  Identities=14%  Similarity=0.012  Sum_probs=54.4

Q ss_pred             ccccCCCcceeEEeeehHHHHhhhcCchhhcceeEEEEeecCCCCCcccchhhcccCCeEEEeecCCceEEecccCccCc
Q 026434            4 LLGLKHLKVLSWSFGSSLAVQKFLKYPKLVSITQSVGVYQCRSPPFNVFHLAYMENLQELELEYCNLEEMKIDSTDEVKK   83 (238)
Q Consensus         4 L~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~c~~l~~~~~~l~~l~~L~~L~i~~c~l~~i~~~~~~~~~~   83 (238)
                      +..+.+|+.|++.......+..+    ...++|+.|++.++. +.. + .+..+++|++|++++|.++.+.         
T Consensus        38 ~~~l~~L~~L~Ls~n~l~~~~~l----~~l~~L~~L~Ls~n~-l~~-~-~~~~l~~L~~L~Ls~N~l~~~~---------  101 (457)
T 3bz5_A           38 EEQLATLTSLDCHNSSITDMTGI----EKLTGLTKLICTSNN-ITT-L-DLSQNTNLTYLACDSNKLTNLD---------  101 (457)
T ss_dssp             HHHHTTCCEEECCSSCCCCCTTG----GGCTTCSEEECCSSC-CSC-C-CCTTCTTCSEEECCSSCCSCCC---------
T ss_pred             hhHcCCCCEEEccCCCcccChhh----cccCCCCEEEccCCc-CCe-E-ccccCCCCCEEECcCCCCceee---------
Confidence            34466666666643322222211    122567777777663 232 2 2566677777777776644331         


Q ss_pred             ccccCCCCccEEEEecCCCCCcCcccccCCCccEEEEecc
Q 026434           84 LFQSGFRSLNTVHVFYCQKAKDLTWLVFVQNLKKLRIEFC  123 (238)
Q Consensus        84 ~~~~~l~~L~~L~i~~C~~L~~l~~~~~l~~L~~L~i~~C  123 (238)
                        ...+++|+.|+++++ +++.++ +..+++|++|++.++
T Consensus       102 --~~~l~~L~~L~L~~N-~l~~l~-~~~l~~L~~L~l~~N  137 (457)
T 3bz5_A          102 --VTPLTKLTYLNCDTN-KLTKLD-VSQNPLLTYLNCARN  137 (457)
T ss_dssp             --CTTCTTCCEEECCSS-CCSCCC-CTTCTTCCEEECTTS
T ss_pred             --cCCCCcCCEEECCCC-cCCeec-CCCCCcCCEEECCCC
Confidence              234666666666665 455543 556666666666654

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=98.75  E-value=1.6e-08  Score=84.69  Aligned_cols=156  Identities=15%  Similarity=0.150  Sum_probs=100.8

Q ss_pred             cccCCCcceeEEeeehHHHHhhhcCchhhcceeEEEEeecCCCCC-cccchhhcccCCeEEEeecCCceEEecccCccCc
Q 026434            5 LGLKHLKVLSWSFGSSLAVQKFLKYPKLVSITQSVGVYQCRSPPF-NVFHLAYMENLQELELEYCNLEEMKIDSTDEVKK   83 (238)
Q Consensus         5 ~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~c~~l~~-~~~~l~~l~~L~~L~i~~c~l~~i~~~~~~~~~~   83 (238)
                      ..+.+|+.|++.......+..   ...-.++|+.|++.++.--.. ....+.++++|+.|++++|.+..+...       
T Consensus        75 ~~~~~L~~L~Ls~n~i~~l~~---~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-------  144 (306)
T 2z66_A           75 FGTTSLKYLDLSFNGVITMSS---NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNG-------  144 (306)
T ss_dssp             HSCSCCCEEECCSCSEEEEEE---EEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTT-------
T ss_pred             ccccccCEEECCCCccccChh---hcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchh-------
Confidence            357888888875432222211   112236889998887642111 123577889999999999884433211       


Q ss_pred             ccccCCCCccEEEEecCCCCCc--Cc-ccccCCCccEEEEecccccceecccccccccccccccccccccccceeecccc
Q 026434           84 LFQSGFRSLNTVHVFYCQKAKD--LT-WLVFVQNLKKLRIEFCDDVEEIIGVDKLRDISEIIGSEHNFFAQLEYLTISWG  160 (238)
Q Consensus        84 ~~~~~l~~L~~L~i~~C~~L~~--l~-~~~~l~~L~~L~i~~C~~l~~l~~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~  160 (238)
                       ....+++|+.|+++++ ++..  ++ .+..+++|++|+++++ .+..+.+            ..+..+++|++|+++++
T Consensus       145 -~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~------------~~~~~l~~L~~L~L~~N  209 (306)
T 2z66_A          145 -IFNGLSSLEVLKMAGN-SFQENFLPDIFTELRNLTFLDLSQC-QLEQLSP------------TAFNSLSSLQVLNMSHN  209 (306)
T ss_dssp             -TTTTCTTCCEEECTTC-EEGGGEECSCCTTCTTCCEEECTTS-CCCEECT------------TTTTTCTTCCEEECTTS
T ss_pred             -hcccCcCCCEEECCCC-ccccccchhHHhhCcCCCEEECCCC-CcCCcCH------------HHhcCCCCCCEEECCCC
Confidence             2345789999999887 3443  22 4567899999999887 4444422            34556789999999876


Q ss_pred             ccccccCC-CCCCCCCccEEeEcCccC
Q 026434          161 INLKGVYP-NPLPFPKLKKIKVRGCRH  186 (238)
Q Consensus       161 ~~L~~i~~-~~~~~~~L~~L~i~~C~~  186 (238)
                      . ++++.. ....+++|+.|+++++.-
T Consensus       210 ~-l~~~~~~~~~~l~~L~~L~L~~N~l  235 (306)
T 2z66_A          210 N-FFSLDTFPYKCLNSLQVLDYSLNHI  235 (306)
T ss_dssp             C-CSBCCSGGGTTCTTCCEEECTTSCC
T ss_pred             c-cCccChhhccCcccCCEeECCCCCC
Confidence            3 555543 234578999999998854

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=98.73  E-value=3.2e-08  Score=91.48  Aligned_cols=182  Identities=15%  Similarity=0.088  Sum_probs=100.7

Q ss_pred             cccccCCCcceeEEeeehHH---------------HHhhhcCch--hhcceeEEEEeecCCCCCcccchhhcccCCeEEE
Q 026434            3 ELLGLKHLKVLSWSFGSSLA---------------VQKFLKYPK--LVSITQSVGVYQCRSPPFNVFHLAYMENLQELEL   65 (238)
Q Consensus         3 eL~~L~~L~~L~i~~~~~~~---------------l~~l~~~~~--l~~~L~~L~l~~c~~l~~~~~~l~~l~~L~~L~i   65 (238)
                      ++.++.+|+.|++.......               ...+.....  -.++|+.|.+.+|.-.......+.++++|+.|++
T Consensus       201 ~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L  280 (636)
T 4eco_A          201 AVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINV  280 (636)
T ss_dssp             GGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEEC
T ss_pred             HHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEEC
Confidence            57788899999987543222               001333333  3478999999998643322245788899999999


Q ss_pred             eecC-Cce--EEecccCccCcccccCCCCccEEEEecCCCCCcCcc---cccCCCccEEEEecccccc-eeccccc----
Q 026434           66 EYCN-LEE--MKIDSTDEVKKLFQSGFRSLNTVHVFYCQKAKDLTW---LVFVQNLKKLRIEFCDDVE-EIIGVDK----  134 (238)
Q Consensus        66 ~~c~-l~~--i~~~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~---~~~l~~L~~L~i~~C~~l~-~l~~~~~----  134 (238)
                      ++|. +..  ++.....   ......+++|+.|+++++ +++.++.   +..+++|++|++.++. +. .+.....    
T Consensus       281 s~n~~l~~~~lp~~~~~---L~~~~~l~~L~~L~L~~n-~l~~ip~~~~l~~l~~L~~L~L~~N~-l~g~ip~~~~l~~L  355 (636)
T 4eco_A          281 ACNRGISGEQLKDDWQA---LADAPVGEKIQIIYIGYN-NLKTFPVETSLQKMKKLGMLECLYNQ-LEGKLPAFGSEIKL  355 (636)
T ss_dssp             TTCTTSCHHHHHHHHHH---HHHSGGGGTCCEEECCSS-CCSSCCCHHHHTTCTTCCEEECCSCC-CEEECCCCEEEEEE
T ss_pred             cCCCCCccccchHHHHh---hhccccCCCCCEEECCCC-cCCccCchhhhccCCCCCEEeCcCCc-CccchhhhCCCCCC
Confidence            9987 763  3211100   000112377888888777 4666654   6677888888887763 33 2210000    


Q ss_pred             ------ccccccccccccccccc-cceeeccccccccccCCCC--CCCCCccEEeEcCccCCCCCC
Q 026434          135 ------LRDISEIIGSEHNFFAQ-LEYLTISWGINLKGVYPNP--LPFPKLKKIKVRGCRHLKKLP  191 (238)
Q Consensus       135 ------~~~~~~~~~~~~~~~p~-L~~L~L~~~~~L~~i~~~~--~~~~~L~~L~i~~C~~L~~lp  191 (238)
                            ......++ ..+..+++ |++|+++++. ++.++...  ..+++|+.|+++++.--..+|
T Consensus       356 ~~L~L~~N~l~~lp-~~l~~l~~~L~~L~Ls~N~-l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p  419 (636)
T 4eco_A          356 ASLNLAYNQITEIP-ANFCGFTEQVENLSFAHNK-LKYIPNIFDAKSVSVMSAIDFSYNEIGSVDG  419 (636)
T ss_dssp             SEEECCSSEEEECC-TTSEEECTTCCEEECCSSC-CSSCCSCCCTTCSSCEEEEECCSSCTTTTTT
T ss_pred             CEEECCCCcccccc-HhhhhhcccCcEEEccCCc-CcccchhhhhcccCccCEEECcCCcCCCcch
Confidence                  00000111 23445566 7777766553 44554322  223467777777765544444

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=98.72  E-value=2.7e-08  Score=83.17  Aligned_cols=83  Identities=18%  Similarity=0.099  Sum_probs=53.7

Q ss_pred             CCCCccEEEEecCCCCCcCcc--cccCCCccEEEEecccccceecccccccccccccccccccccccceeeccccccccc
Q 026434           88 GFRSLNTVHVFYCQKAKDLTW--LVFVQNLKKLRIEFCDDVEEIIGVDKLRDISEIIGSEHNFFAQLEYLTISWGINLKG  165 (238)
Q Consensus        88 ~l~~L~~L~i~~C~~L~~l~~--~~~l~~L~~L~i~~C~~l~~l~~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~  165 (238)
                      .+++|+.|+++++ +++.++.  +..+++|+.|++.++ ++..+..            .....+++|+.|++.+. .++.
T Consensus       122 ~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~------------~~~~~l~~L~~L~L~~N-~l~~  186 (290)
T 1p9a_G          122 GLGELQELYLKGN-ELKTLPPGLLTPTPKLEKLSLANN-NLTELPA------------GLLNGLENLDTLLLQEN-SLYT  186 (290)
T ss_dssp             TCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTS-CCSCCCT------------TTTTTCTTCCEEECCSS-CCCC
T ss_pred             CCCCCCEEECCCC-CCCccChhhcccccCCCEEECCCC-cCCccCH------------HHhcCcCCCCEEECCCC-cCCc
Confidence            4566666666665 4555543  345566666666654 3333321            23456889999999865 5778


Q ss_pred             cCCCCCCCCCccEEeEcCcc
Q 026434          166 VYPNPLPFPKLKKIKVRGCR  185 (238)
Q Consensus       166 i~~~~~~~~~L~~L~i~~C~  185 (238)
                      ++......++|+.|.+.+.|
T Consensus       187 ip~~~~~~~~L~~l~L~~Np  206 (290)
T 1p9a_G          187 IPKGFFGSHLLPFAFLHGNP  206 (290)
T ss_dssp             CCTTTTTTCCCSEEECCSCC
T ss_pred             cChhhcccccCCeEEeCCCC
Confidence            87777778899999988654

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=98.70  E-value=5.8e-08  Score=92.79  Aligned_cols=118  Identities=14%  Similarity=0.059  Sum_probs=72.0

Q ss_pred             cccccCCCcceeEEeeehHH--------------H-HhhhcCch--hhcceeEEEEeecCCCCCcccchhhcccCCeEEE
Q 026434            3 ELLGLKHLKVLSWSFGSSLA--------------V-QKFLKYPK--LVSITQSVGVYQCRSPPFNVFHLAYMENLQELEL   65 (238)
Q Consensus         3 eL~~L~~L~~L~i~~~~~~~--------------l-~~l~~~~~--l~~~L~~L~l~~c~~l~~~~~~l~~l~~L~~L~i   65 (238)
                      ++.+|.+|+.|++.......              + ..+.....  -.++|+.|.+.+|.-.......+.++++|+.|++
T Consensus       443 ~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~L  522 (876)
T 4ecn_A          443 AIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNI  522 (876)
T ss_dssp             GGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEEC
T ss_pred             HHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEEC
Confidence            57788999999987543222              0 01233222  3468999999998643332245788999999999


Q ss_pred             eecC-Cce--EEecccCccCcccccCCCCccEEEEecCCCCCcCcc---cccCCCccEEEEecc
Q 026434           66 EYCN-LEE--MKIDSTDEVKKLFQSGFRSLNTVHVFYCQKAKDLTW---LVFVQNLKKLRIEFC  123 (238)
Q Consensus        66 ~~c~-l~~--i~~~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~---~~~l~~L~~L~i~~C  123 (238)
                      ++|. +..  ++......  ......+++|+.|+++++ ++..+|.   +..+++|++|+++++
T Consensus       523 s~N~~lsg~~iP~~i~~L--~~~~~~l~~L~~L~Ls~N-~L~~ip~~~~l~~L~~L~~L~Ls~N  583 (876)
T 4ecn_A          523 ACNRGISAAQLKADWTRL--ADDEDTGPKIQIFYMGYN-NLEEFPASASLQKMVKLGLLDCVHN  583 (876)
T ss_dssp             TTCTTSCHHHHHHHHHHH--HHCTTTTTTCCEEECCSS-CCCBCCCHHHHTTCTTCCEEECTTS
T ss_pred             cCCCCcccccchHHHHhh--hhcccccCCccEEEeeCC-cCCccCChhhhhcCCCCCEEECCCC
Confidence            9997 663  32111000  001234567777777766 4556654   566777777777665

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=98.70  E-value=5.6e-08  Score=89.09  Aligned_cols=100  Identities=17%  Similarity=0.226  Sum_probs=50.3

Q ss_pred             CCccEEEEecCCCCCcCcccccCCCccEEEEecccccceeccccc------------ccccccccccccccccccceeec
Q 026434           90 RSLNTVHVFYCQKAKDLTWLVFVQNLKKLRIEFCDDVEEIIGVDK------------LRDISEIIGSEHNFFAQLEYLTI  157 (238)
Q Consensus        90 ~~L~~L~i~~C~~L~~l~~~~~l~~L~~L~i~~C~~l~~l~~~~~------------~~~~~~~~~~~~~~~p~L~~L~L  157 (238)
                      ++|+.|+++++ +++..+++..+++|++|+++++. +..+++..-            .....+.+ .....+|+|+.|+|
T Consensus       232 ~~L~~L~L~~n-~l~~~~~l~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~-~~~~~l~~L~~L~L  308 (597)
T 3oja_B          232 VELTILKLQHN-NLTDTAWLLNYPGLVEVDLSYNE-LEKIMYHPFVKMQRLERLYISNNRLVALN-LYGQPIPTLKVLDL  308 (597)
T ss_dssp             SCCCEEECCSS-CCCCCGGGGGCTTCSEEECCSSC-CCEEESGGGTTCSSCCEEECTTSCCCEEE-CSSSCCTTCCEEEC
T ss_pred             CCCCEEECCCC-CCCCChhhccCCCCCEEECCCCc-cCCCCHHHhcCccCCCEEECCCCCCCCCC-cccccCCCCcEEEC
Confidence            34555555555 45555566677777777777763 333321100            00000010 22234566666666


Q ss_pred             cccccccccCCCCCCCCCccEEeEcCccCCCCCCCCC
Q 026434          158 SWGINLKGVYPNPLPFPKLKKIKVRGCRHLKKLPLNS  194 (238)
Q Consensus       158 ~~~~~L~~i~~~~~~~~~L~~L~i~~C~~L~~lp~~~  194 (238)
                      +++ .+..++.....+++|+.|++++|. +..+|...
T Consensus       309 s~N-~l~~i~~~~~~l~~L~~L~L~~N~-l~~~~~~~  343 (597)
T 3oja_B          309 SHN-HLLHVERNQPQFDRLENLYLDHNS-IVTLKLST  343 (597)
T ss_dssp             CSS-CCCCCGGGHHHHTTCSEEECCSSC-CCCCCCCT
T ss_pred             CCC-CCCccCcccccCCCCCEEECCCCC-CCCcChhh
Confidence            654 344444333446777777777764 45555433

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=98.70  E-value=5.6e-08  Score=82.22  Aligned_cols=47  Identities=11%  Similarity=0.034  Sum_probs=32.2

Q ss_pred             ccccccccceeeccccccccccCCCCCCCCCccEEeEcCccCCCCCCCC
Q 026434          145 EHNFFAQLEYLTISWGINLKGVYPNPLPFPKLKKIKVRGCRHLKKLPLN  193 (238)
Q Consensus       145 ~~~~~p~L~~L~L~~~~~L~~i~~~~~~~~~L~~L~i~~C~~L~~lp~~  193 (238)
                      .+..+++|++|+++++ .++.++.....+++|+.|++.+++ ++.+|..
T Consensus       235 ~~~~l~~L~~L~L~~N-~l~~lp~~l~~l~~L~~L~l~~N~-i~~~~~~  281 (330)
T 1xku_A          235 SLANTPHLRELHLNNN-KLVKVPGGLADHKYIQVVYLHNNN-ISAIGSN  281 (330)
T ss_dssp             TGGGSTTCCEEECCSS-CCSSCCTTTTTCSSCCEEECCSSC-CCCCCTT
T ss_pred             hccCCCCCCEEECCCC-cCccCChhhccCCCcCEEECCCCc-CCccChh
Confidence            3456677888888766 466666555667888888888774 6666644

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=98.69  E-value=3.6e-08  Score=85.36  Aligned_cols=123  Identities=15%  Similarity=0.140  Sum_probs=85.5

Q ss_pred             ceeEEEEeecCCCCCcccchhhcccCCeEEEeecCCceEEecccCccCcccccCCCCccEEEEecCCCCCcCcc-cccCC
Q 026434           35 ITQSVGVYQCRSPPFNVFHLAYMENLQELELEYCNLEEMKIDSTDEVKKLFQSGFRSLNTVHVFYCQKAKDLTW-LVFVQ  113 (238)
Q Consensus        35 ~L~~L~l~~c~~l~~~~~~l~~l~~L~~L~i~~c~l~~i~~~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~-~~~l~  113 (238)
                      +|+.|++.++.- . ....+.++++|++|++++|.+..+....        ...+++|+.|+++++ +++.++. ...++
T Consensus       227 ~L~~L~l~~n~l-~-~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--------~~~l~~L~~L~L~~n-~l~~~~~~~~~l~  295 (390)
T 3o6n_A          227 ELTILKLQHNNL-T-DTAWLLNYPGLVEVDLSYNELEKIMYHP--------FVKMQRLERLYISNN-RLVALNLYGQPIP  295 (390)
T ss_dssp             SCCEEECCSSCC-C-CCGGGGGCTTCSEEECCSSCCCEEESGG--------GTTCSSCCEEECCSS-CCCEEECSSSCCT
T ss_pred             cccEEECCCCCC-c-ccHHHcCCCCccEEECCCCcCCCcChhH--------ccccccCCEEECCCC-cCcccCcccCCCC
Confidence            566666665532 2 2345677788888888888855553222        245888999999887 6777653 45688


Q ss_pred             CccEEEEecccccceecccccccccccccccccccccccceeeccccccccccCCCCCCCCCccEEeEcCcc
Q 026434          114 NLKKLRIEFCDDVEEIIGVDKLRDISEIIGSEHNFFAQLEYLTISWGINLKGVYPNPLPFPKLKKIKVRGCR  185 (238)
Q Consensus       114 ~L~~L~i~~C~~l~~l~~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~~~~~~~~L~~L~i~~C~  185 (238)
                      +|++|++++| .+..+.             ..+..+++|++|++.+++ ++.+.  ...+++|+.|++.+++
T Consensus       296 ~L~~L~L~~n-~l~~~~-------------~~~~~l~~L~~L~L~~N~-i~~~~--~~~~~~L~~L~l~~N~  350 (390)
T 3o6n_A          296 TLKVLDLSHN-HLLHVE-------------RNQPQFDRLENLYLDHNS-IVTLK--LSTHHTLKNLTLSHND  350 (390)
T ss_dssp             TCCEEECCSS-CCCCCG-------------GGHHHHTTCSEEECCSSC-CCCCC--CCTTCCCSEEECCSSC
T ss_pred             CCCEEECCCC-cceecC-------------ccccccCcCCEEECCCCc-cceeC--chhhccCCEEEcCCCC
Confidence            9999999888 454442             244568999999999875 56553  4567899999998764

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=98.69  E-value=3e-08  Score=88.85  Aligned_cols=40  Identities=13%  Similarity=0.099  Sum_probs=22.3

Q ss_pred             cccccccceeeccccccccccCCCCCCCCCccEEeEcCccC
Q 026434          146 HNFFAQLEYLTISWGINLKGVYPNPLPFPKLKKIKVRGCRH  186 (238)
Q Consensus       146 ~~~~p~L~~L~L~~~~~L~~i~~~~~~~~~L~~L~i~~C~~  186 (238)
                      +..+++|+.|+++++ .+.+++.....+++|+.|++.+++-
T Consensus       210 ~~~l~~L~~L~Ls~N-~l~~lp~~l~~l~~L~~L~l~~N~l  249 (487)
T 3oja_A          210 FQSAAGVTWISLRNN-KLVLIEKALRFSQNLEHFDLRGNGF  249 (487)
T ss_dssp             GGGGTTCSEEECTTS-CCCEECTTCCCCTTCCEEECTTCCB
T ss_pred             HcCCCCccEEEecCC-cCcccchhhccCCCCCEEEcCCCCC
Confidence            344566666666653 3555554444556666666666543

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=98.69  E-value=8.9e-08  Score=78.00  Aligned_cols=130  Identities=16%  Similarity=0.141  Sum_probs=96.1

Q ss_pred             hcceeEEEEeecCCCCC-cccchhhcccCCeEEEeecCCceEEecccCccCcccccCCCCccEEEEecCCCCCcCcc--c
Q 026434           33 VSITQSVGVYQCRSPPF-NVFHLAYMENLQELELEYCNLEEMKIDSTDEVKKLFQSGFRSLNTVHVFYCQKAKDLTW--L  109 (238)
Q Consensus        33 ~~~L~~L~l~~c~~l~~-~~~~l~~l~~L~~L~i~~c~l~~i~~~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~--~  109 (238)
                      .++|+.|++.++. +.. ....+.++++|+.|+++++.+..+..+.        ...+++|+.|+++++ +++.++.  +
T Consensus        58 l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~--------~~~l~~L~~L~L~~N-~l~~~~~~~~  127 (251)
T 3m19_A           58 LTKLTWLNLDYNQ-LQTLSAGVFDDLTELGTLGLANNQLASLPLGV--------FDHLTQLDKLYLGGN-QLKSLPSGVF  127 (251)
T ss_dssp             CTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTT--------TTTCTTCCEEECCSS-CCCCCCTTTT
T ss_pred             cccCCEEECCCCc-CCccCHhHhccCCcCCEEECCCCcccccChhH--------hcccCCCCEEEcCCC-cCCCcChhHh
Confidence            3689999998864 333 2234688999999999999865553222        246899999999987 7888764  5


Q ss_pred             ccCCCccEEEEecccccceecccccccccccccccccccccccceeeccccccccccCCC-CCCCCCccEEeEcCccC
Q 026434          110 VFVQNLKKLRIEFCDDVEEIIGVDKLRDISEIIGSEHNFFAQLEYLTISWGINLKGVYPN-PLPFPKLKKIKVRGCRH  186 (238)
Q Consensus       110 ~~l~~L~~L~i~~C~~l~~l~~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~~-~~~~~~L~~L~i~~C~~  186 (238)
                      ..+++|++|++.++ .+..+..            ..+..+++|++|+|.+. .++++... ...+++|+.|++.+++-
T Consensus       128 ~~l~~L~~L~Ls~N-~l~~~~~------------~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~  191 (251)
T 3m19_A          128 DRLTKLKELRLNTN-QLQSIPA------------GAFDKLTNLQTLSLSTN-QLQSVPHGAFDRLGKLQTITLFGNQF  191 (251)
T ss_dssp             TTCTTCCEEECCSS-CCCCCCT------------TTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSCCB
T ss_pred             ccCCcccEEECcCC-cCCccCH------------HHcCcCcCCCEEECCCC-cCCccCHHHHhCCCCCCEEEeeCCce
Confidence            67999999999987 5554432            24567899999999876 56666653 45679999999988653

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=98.68  E-value=1.3e-07  Score=76.16  Aligned_cols=127  Identities=15%  Similarity=0.070  Sum_probs=74.4

Q ss_pred             cceeEEEEeecCCCCC-cccchhhcccCCeEEEeecCCceEEecccCccCcccccCCCCccEEEEecCCCCCcCcc--cc
Q 026434           34 SITQSVGVYQCRSPPF-NVFHLAYMENLQELELEYCNLEEMKIDSTDEVKKLFQSGFRSLNTVHVFYCQKAKDLTW--LV  110 (238)
Q Consensus        34 ~~L~~L~l~~c~~l~~-~~~~l~~l~~L~~L~i~~c~l~~i~~~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~--~~  110 (238)
                      ++++.|++.++.- .. ....+.++++|+.|+++++.+..+....        ...+++|+.|+++++ +++.++.  +.
T Consensus        40 ~~L~~L~Ls~n~i-~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~--------~~~l~~L~~L~Ls~N-~l~~l~~~~~~  109 (229)
T 3e6j_A           40 TNAQILYLHDNQI-TKLEPGVFDSLINLKELYLGSNQLGALPVGV--------FDSLTQLTVLDLGTN-QLTVLPSAVFD  109 (229)
T ss_dssp             TTCSEEECCSSCC-CCCCTTTTTTCTTCCEEECCSSCCCCCCTTT--------TTTCTTCCEEECCSS-CCCCCCTTTTT
T ss_pred             CCCCEEEcCCCcc-CccCHHHhhCccCCcEEECCCCCCCCcChhh--------cccCCCcCEEECCCC-cCCccChhHhC
Confidence            5677777776532 22 1233566677777777777654442111        134677777777766 5666653  45


Q ss_pred             cCCCccEEEEecccccceecccccccccccccccccccccccceeeccccccccccCCC-CCCCCCccEEeEcCcc
Q 026434          111 FVQNLKKLRIEFCDDVEEIIGVDKLRDISEIIGSEHNFFAQLEYLTISWGINLKGVYPN-PLPFPKLKKIKVRGCR  185 (238)
Q Consensus       111 ~l~~L~~L~i~~C~~l~~l~~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~~-~~~~~~L~~L~i~~C~  185 (238)
                      .+++|++|++.++ ++..+.             ..+..+++|+.|++.+. +++.+... ...+++|+.|++.+.|
T Consensus       110 ~l~~L~~L~Ls~N-~l~~lp-------------~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~  170 (229)
T 3e6j_A          110 RLVHLKELFMCCN-KLTELP-------------RGIERLTHLTHLALDQN-QLKSIPHGAFDRLSSLTHAYLFGNP  170 (229)
T ss_dssp             TCTTCCEEECCSS-CCCSCC-------------TTGGGCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred             cchhhCeEeccCC-cccccC-------------cccccCCCCCEEECCCC-cCCccCHHHHhCCCCCCEEEeeCCC
Confidence            6777777777665 343331             23455677777777664 55555542 3446677777776544

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=98.68  E-value=9.6e-08  Score=81.60  Aligned_cols=80  Identities=21%  Similarity=0.189  Sum_probs=37.4

Q ss_pred             cceeEEEEeecCCCCC-cccchhhcccCCeEEEeecCCceEEecccCccCcccccCCCCccEEEEecCCCCCcCcc--cc
Q 026434           34 SITQSVGVYQCRSPPF-NVFHLAYMENLQELELEYCNLEEMKIDSTDEVKKLFQSGFRSLNTVHVFYCQKAKDLTW--LV  110 (238)
Q Consensus        34 ~~L~~L~l~~c~~l~~-~~~~l~~l~~L~~L~i~~c~l~~i~~~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~--~~  110 (238)
                      ++++.|++.++. +.. ....+.++++|+.|++++|.+..+..+.        ...+++|+.|+++++ +++.++.  +.
T Consensus        52 ~~L~~L~l~~n~-i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~--------~~~l~~L~~L~Ls~n-~l~~~~~~~~~  121 (353)
T 2z80_A           52 EAVKSLDLSNNR-ITYISNSDLQRCVNLQALVLTSNGINTIEEDS--------FSSLGSLEHLDLSYN-YLSNLSSSWFK  121 (353)
T ss_dssp             TTCCEEECTTSC-CCEECTTTTTTCTTCCEEECTTSCCCEECTTT--------TTTCTTCCEEECCSS-CCSSCCHHHHT
T ss_pred             ccCcEEECCCCc-CcccCHHHhccCCCCCEEECCCCccCccCHhh--------cCCCCCCCEEECCCC-cCCcCCHhHhC
Confidence            356666665543 222 1123555666666666666544332111        123445555555544 3444432  33


Q ss_pred             cCCCccEEEEecc
Q 026434          111 FVQNLKKLRIEFC  123 (238)
Q Consensus       111 ~l~~L~~L~i~~C  123 (238)
                      .+++|++|++.++
T Consensus       122 ~l~~L~~L~L~~n  134 (353)
T 2z80_A          122 PLSSLTFLNLLGN  134 (353)
T ss_dssp             TCTTCSEEECTTC
T ss_pred             CCccCCEEECCCC
Confidence            4455555555443

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=98.67  E-value=7.1e-08  Score=79.43  Aligned_cols=126  Identities=17%  Similarity=0.206  Sum_probs=91.5

Q ss_pred             hcceeEEEEeecCCCCCcccchhhcccCCeEEEeecCCceEEecccCccCcccccCCCCccEEEEecCCCCCcCcccccC
Q 026434           33 VSITQSVGVYQCRSPPFNVFHLAYMENLQELELEYCNLEEMKIDSTDEVKKLFQSGFRSLNTVHVFYCQKAKDLTWLVFV  112 (238)
Q Consensus        33 ~~~L~~L~l~~c~~l~~~~~~l~~l~~L~~L~i~~c~l~~i~~~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~l  112 (238)
                      .++|+.|++.++. +.. ++.+..+++|+.|++++|.+..+.          ....+++|+.|+++++ +++.++.+.. 
T Consensus        40 l~~L~~L~l~~n~-i~~-l~~l~~l~~L~~L~L~~N~i~~~~----------~l~~l~~L~~L~L~~N-~l~~l~~~~~-  105 (263)
T 1xeu_A           40 LSGVQNFNGDNSN-IQS-LAGMQFFTNLKELHLSHNQISDLS----------PLKDLTKLEELSVNRN-RLKNLNGIPS-  105 (263)
T ss_dssp             HTTCSEEECTTSC-CCC-CTTGGGCTTCCEEECCSSCCCCCG----------GGTTCSSCCEEECCSS-CCSCCTTCCC-
T ss_pred             cCcCcEEECcCCC-ccc-chHHhhCCCCCEEECCCCccCCCh----------hhccCCCCCEEECCCC-ccCCcCcccc-
Confidence            3678888888873 343 556788889999999988855442          1356889999999887 6777766555 


Q ss_pred             CCccEEEEecccccceecccccccccccccccccccccccceeeccccccccccCCCCCCCCCccEEeEcCccCCCCC
Q 026434          113 QNLKKLRIEFCDDVEEIIGVDKLRDISEIIGSEHNFFAQLEYLTISWGINLKGVYPNPLPFPKLKKIKVRGCRHLKKL  190 (238)
Q Consensus       113 ~~L~~L~i~~C~~l~~l~~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~~~~~~~~L~~L~i~~C~~L~~l  190 (238)
                      ++|++|++.++ .+..+              ..+..+++|+.|++++. +++++. ....+++|+.|+++++. ++.+
T Consensus       106 ~~L~~L~L~~N-~l~~~--------------~~l~~l~~L~~L~Ls~N-~i~~~~-~l~~l~~L~~L~L~~N~-i~~~  165 (263)
T 1xeu_A          106 ACLSRLFLDNN-ELRDT--------------DSLIHLKNLEILSIRNN-KLKSIV-MLGFLSKLEVLDLHGNE-ITNT  165 (263)
T ss_dssp             SSCCEEECCSS-CCSBS--------------GGGTTCTTCCEEECTTS-CCCBCG-GGGGCTTCCEEECTTSC-CCBC
T ss_pred             CcccEEEccCC-ccCCC--------------hhhcCcccccEEECCCC-cCCCCh-HHccCCCCCEEECCCCc-Ccch
Confidence            89999999887 44443              24557899999999875 355553 34568999999999873 4444

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=98.66  E-value=2.7e-08  Score=83.95  Aligned_cols=187  Identities=13%  Similarity=0.071  Sum_probs=99.4

Q ss_pred             ccCCCcceeEEeeehHHHH-hhhcCchhhcceeEEEEeecCCCCCcccchhhcccCCeEEEeecCCceEEec--------
Q 026434            6 GLKHLKVLSWSFGSSLAVQ-KFLKYPKLVSITQSVGVYQCRSPPFNVFHLAYMENLQELELEYCNLEEMKID--------   76 (238)
Q Consensus         6 ~L~~L~~L~i~~~~~~~l~-~l~~~~~l~~~L~~L~l~~c~~l~~~~~~l~~l~~L~~L~i~~c~l~~i~~~--------   76 (238)
                      .+.+|+.|+++......+. ..+.   -.++|+.|++.++.- .. ...+..+++|++|++++|.+..+...        
T Consensus        32 ~~~~L~~L~L~~n~l~~~~~~~~~---~l~~L~~L~Ls~n~l-~~-~~~~~~l~~L~~L~Ls~n~l~~l~~~~~L~~L~l  106 (317)
T 3o53_A           32 SAWNVKELDLSGNPLSQISAADLA---PFTKLELLNLSSNVL-YE-TLDLESLSTLRTLDLNNNYVQELLVGPSIETLHA  106 (317)
T ss_dssp             TGGGCSEEECTTSCCCCCCHHHHT---TCTTCCEEECTTSCC-EE-EEEETTCTTCCEEECCSSEEEEEEECTTCCEEEC
T ss_pred             cCCCCCEEECcCCccCcCCHHHhh---CCCcCCEEECCCCcC-Cc-chhhhhcCCCCEEECcCCccccccCCCCcCEEEC
Confidence            4457777776532221111 1111   125678888877642 21 23366777777777777654333211        


Q ss_pred             -ccCccCcccccCCCCccEEEEecCCCCCcCc--ccccCCCccEEEEecccccceecccccc---cc----------ccc
Q 026434           77 -STDEVKKLFQSGFRSLNTVHVFYCQKAKDLT--WLVFVQNLKKLRIEFCDDVEEIIGVDKL---RD----------ISE  140 (238)
Q Consensus        77 -~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~--~~~~l~~L~~L~i~~C~~l~~l~~~~~~---~~----------~~~  140 (238)
                       .... .......+++|+.|+++++ +++.++  .+..+++|++|+++++ .+..+....-.   ..          ...
T Consensus       107 ~~n~l-~~~~~~~~~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~l~~L~~L~L~~N~l~~  183 (317)
T 3o53_A          107 ANNNI-SRVSCSRGQGKKNIYLANN-KITMLRDLDEGCRSRVQYLDLKLN-EIDTVNFAELAASSDTLEHLNLQYNFIYD  183 (317)
T ss_dssp             CSSCC-SEEEECCCSSCEEEECCSS-CCCSGGGBCTGGGSSEEEEECTTS-CCCEEEGGGGGGGTTTCCEEECTTSCCCE
T ss_pred             CCCcc-CCcCccccCCCCEEECCCC-CCCCccchhhhccCCCCEEECCCC-CCCcccHHHHhhccCcCCEEECCCCcCcc
Confidence             0000 0011234667777777766 455543  2345677777777665 33332211000   00          000


Q ss_pred             ccccccccccccceeeccccccccccCCCCCCCCCccEEeEcCccCCCCCCCCCCCCCCcceEEE
Q 026434          141 IIGSEHNFFAQLEYLTISWGINLKGVYPNPLPFPKLKKIKVRGCRHLKKLPLNSSSAKERRVVIE  205 (238)
Q Consensus       141 ~~~~~~~~~p~L~~L~L~~~~~L~~i~~~~~~~~~L~~L~i~~C~~L~~lp~~~~~~~~~L~~~~  205 (238)
                      .  .....+++|++|+++++ ++++++.....+++|+.|+++++ +++.+|..-. ...+|+.+.
T Consensus       184 ~--~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~L~~N-~l~~l~~~~~-~l~~L~~L~  243 (317)
T 3o53_A          184 V--KGQVVFAKLKTLDLSSN-KLAFMGPEFQSAAGVTWISLRNN-KLVLIEKALR-FSQNLEHFD  243 (317)
T ss_dssp             E--ECCCCCTTCCEEECCSS-CCCEECGGGGGGTTCSEEECTTS-CCCEECTTCC-CCTTCCEEE
T ss_pred             c--ccccccccCCEEECCCC-cCCcchhhhcccCcccEEECcCC-cccchhhHhh-cCCCCCEEE
Confidence            0  12234778888888765 46666555556789999999988 6777875432 235566553

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=98.66  E-value=1.2e-07  Score=86.50  Aligned_cols=140  Identities=11%  Similarity=0.080  Sum_probs=63.4

Q ss_pred             cceeEEEEeecCCCCC-cccchhhcccCCeEEEeecC-CceEEecccCccCcccccCCCCccEEEEecCCCCCcCc----
Q 026434           34 SITQSVGVYQCRSPPF-NVFHLAYMENLQELELEYCN-LEEMKIDSTDEVKKLFQSGFRSLNTVHVFYCQKAKDLT----  107 (238)
Q Consensus        34 ~~L~~L~l~~c~~l~~-~~~~l~~l~~L~~L~i~~c~-l~~i~~~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~----  107 (238)
                      ++|+.|++.++.- .. ....+.++++|+.|++++|. ...+...        ....+++|+.|+++++ +++.+.    
T Consensus       301 ~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~--------~~~~l~~L~~L~l~~n-~l~~~~~~~~  370 (606)
T 3t6q_A          301 STLKKLVLSANKF-ENLCQISASNFPSLTHLSIKGNTKRLELGTG--------CLENLENLRELDLSHD-DIETSDCCNL  370 (606)
T ss_dssp             TTCCEEECTTCCC-SBGGGGCGGGCTTCSEEECCSCSSCCBCCSS--------TTTTCTTCCEEECCSS-CCCEEEESTT
T ss_pred             ccCCEEECccCCc-CcCchhhhhccCcCCEEECCCCCcccccchh--------hhhccCcCCEEECCCC-ccccccCcch
Confidence            4556666655531 11 11234555666666666555 3222111        1234566666666655 343332    


Q ss_pred             ccccCCCccEEEEecccccceecccc----cc--------cccccc-cccccccccccceeeccccccccccC-CCCCCC
Q 026434          108 WLVFVQNLKKLRIEFCDDVEEIIGVD----KL--------RDISEI-IGSEHNFFAQLEYLTISWGINLKGVY-PNPLPF  173 (238)
Q Consensus       108 ~~~~l~~L~~L~i~~C~~l~~l~~~~----~~--------~~~~~~-~~~~~~~~p~L~~L~L~~~~~L~~i~-~~~~~~  173 (238)
                      .+..+++|++|++.++. +..+.+..    ..        ....+. ....+..+++|+.|+++++. +..+. .....+
T Consensus       371 ~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l  448 (606)
T 3t6q_A          371 QLRNLSHLQSLNLSYNE-PLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSL-LDISSEQLFDGL  448 (606)
T ss_dssp             TTTTCTTCCEEECCSCS-CEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCC-CBTTCTTTTTTC
T ss_pred             hcccCCCCCEEECCCCc-CCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCc-cCCcCHHHHhCC
Confidence            23455666666666552 22221100    00        000000 00124456666676666553 22222 223446


Q ss_pred             CCccEEeEcCcc
Q 026434          174 PKLKKIKVRGCR  185 (238)
Q Consensus       174 ~~L~~L~i~~C~  185 (238)
                      ++|+.|++++|.
T Consensus       449 ~~L~~L~L~~n~  460 (606)
T 3t6q_A          449 PALQHLNLQGNH  460 (606)
T ss_dssp             TTCCEEECTTCB
T ss_pred             CCCCEEECCCCC
Confidence            777777777764

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=98.65  E-value=2.3e-08  Score=83.73  Aligned_cols=156  Identities=15%  Similarity=0.081  Sum_probs=102.0

Q ss_pred             ccccCCCcceeEEeeehHHH----HhhhcCchhhcceeEEEEeecCCCCCcccchhhcccCCeEEEeecCCceEEecccC
Q 026434            4 LLGLKHLKVLSWSFGSSLAV----QKFLKYPKLVSITQSVGVYQCRSPPFNVFHLAYMENLQELELEYCNLEEMKIDSTD   79 (238)
Q Consensus         4 L~~L~~L~~L~i~~~~~~~l----~~l~~~~~l~~~L~~L~l~~c~~l~~~~~~l~~l~~L~~L~i~~c~l~~i~~~~~~   79 (238)
                      +..+.+|+.|++........    ..+..    .++|+.|++.++.- ......+..+++|++|+++++.+..+..    
T Consensus        48 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~~----~~~L~~L~Ls~n~i-~~l~~~~~~l~~L~~L~l~~n~l~~~~~----  118 (306)
T 2z66_A           48 FDKLTQLTKLSLSSNGLSFKGCCSQSDFG----TTSLKYLDLSFNGV-ITMSSNFLGLEQLEHLDFQHSNLKQMSE----  118 (306)
T ss_dssp             TTTCTTCSEEECCSSCCCEEEEEEHHHHS----CSCCCEEECCSCSE-EEEEEEEETCTTCCEEECTTSEEESSTT----
T ss_pred             hhccccCCEEECCCCccCcccCccccccc----ccccCEEECCCCcc-ccChhhcCCCCCCCEEECCCCccccccc----
Confidence            56788899998753221111    12222    25899999988742 2212246778999999999887443311    


Q ss_pred             ccCcccccCCCCccEEEEecCCCCCcCc--ccccCCCccEEEEecccccceecccccccccccccccccccccccceeec
Q 026434           80 EVKKLFQSGFRSLNTVHVFYCQKAKDLT--WLVFVQNLKKLRIEFCDDVEEIIGVDKLRDISEIIGSEHNFFAQLEYLTI  157 (238)
Q Consensus        80 ~~~~~~~~~l~~L~~L~i~~C~~L~~l~--~~~~l~~L~~L~i~~C~~l~~l~~~~~~~~~~~~~~~~~~~~p~L~~L~L  157 (238)
                         ......+++|+.|+++++ .+....  .+..+++|++|++.++.--...++            ..+..+++|++|++
T Consensus       119 ---~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~------------~~~~~l~~L~~L~L  182 (306)
T 2z66_A          119 ---FSVFLSLRNLIYLDISHT-HTRVAFNGIFNGLSSLEVLKMAGNSFQENFLP------------DIFTELRNLTFLDL  182 (306)
T ss_dssp             ---TTTTTTCTTCCEEECTTS-CCEECSTTTTTTCTTCCEEECTTCEEGGGEEC------------SCCTTCTTCCEEEC
T ss_pred             ---chhhhhccCCCEEECCCC-cCCccchhhcccCcCCCEEECCCCccccccch------------hHHhhCcCCCEEEC
Confidence               012356889999999988 454433  356789999999988742221211            34567899999999


Q ss_pred             cccccccccCC-CCCCCCCccEEeEcCcc
Q 026434          158 SWGINLKGVYP-NPLPFPKLKKIKVRGCR  185 (238)
Q Consensus       158 ~~~~~L~~i~~-~~~~~~~L~~L~i~~C~  185 (238)
                      +++ .++++.. ....+++|+.|+++++.
T Consensus       183 s~n-~l~~~~~~~~~~l~~L~~L~L~~N~  210 (306)
T 2z66_A          183 SQC-QLEQLSPTAFNSLSSLQVLNMSHNN  210 (306)
T ss_dssp             TTS-CCCEECTTTTTTCTTCCEEECTTSC
T ss_pred             CCC-CcCCcCHHHhcCCCCCCEEECCCCc
Confidence            876 4666543 34567899999998874

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=98.65  E-value=5.4e-08  Score=91.77  Aligned_cols=120  Identities=15%  Similarity=-0.004  Sum_probs=54.5

Q ss_pred             cccccCCCcceeEEeeehH-HHHhhhcCchhhcceeEEEEeecCCCCC-cccchhhcccCCeEEEeecCCceEEec----
Q 026434            3 ELLGLKHLKVLSWSFGSSL-AVQKFLKYPKLVSITQSVGVYQCRSPPF-NVFHLAYMENLQELELEYCNLEEMKID----   76 (238)
Q Consensus         3 eL~~L~~L~~L~i~~~~~~-~l~~l~~~~~l~~~L~~L~l~~c~~l~~-~~~~l~~l~~L~~L~i~~c~l~~i~~~----   76 (238)
                      .+..+.+|++|+++..... .+..... ..-.++|++|++.++.-... ....+.++++|++|++++|.+......    
T Consensus        95 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~  173 (768)
T 3rgz_A           95 GFKCSASLTSLDLSRNSLSGPVTTLTS-LGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVL  173 (768)
T ss_dssp             CCCCCTTCCEEECCSSEEEEEGGGGGG-GGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHH
T ss_pred             hhccCCCCCEEECCCCcCCCcCCChHH-HhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhh
Confidence            4566677777776532211 0111001 11124677777766532111 111124556666666665543222110    


Q ss_pred             -------------ccCccCcccccCCCCccEEEEecCCCCCcCcccccCCCccEEEEecc
Q 026434           77 -------------STDEVKKLFQSGFRSLNTVHVFYCQKAKDLTWLVFVQNLKKLRIEFC  123 (238)
Q Consensus        77 -------------~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~l~~L~~L~i~~C  123 (238)
                                   .....+......+++|+.|++++|.--..++.+..+++|++|++.+|
T Consensus       174 ~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n  233 (768)
T 3rgz_A          174 SDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGN  233 (768)
T ss_dssp             TTCCTTCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSS
T ss_pred             hccCCCCCEEECCCCcccccCCcccCCcCCEEECcCCcCCCCCcccccCCCCCEEECcCC
Confidence                         00000011224566666666666632222344556677777777665

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=98.65  E-value=2e-07  Score=79.72  Aligned_cols=55  Identities=22%  Similarity=0.187  Sum_probs=38.2

Q ss_pred             cccccccceeeccccccccccCCCCCCCCCccEEeEcCccCCCCCCCCCCCCCCcceEEE
Q 026434          146 HNFFAQLEYLTISWGINLKGVYPNPLPFPKLKKIKVRGCRHLKKLPLNSSSAKERRVVIE  205 (238)
Q Consensus       146 ~~~~p~L~~L~L~~~~~L~~i~~~~~~~~~L~~L~i~~C~~L~~lp~~~~~~~~~L~~~~  205 (238)
                      ...+++|+.|++++. ++++++.  ..|.+|+.|.+.+|.+++.+|.-..  ..+|+...
T Consensus       198 f~~l~~L~~LdLs~N-~l~~lp~--~~~~~L~~L~~l~~~~l~~lP~l~~--l~~L~~l~  252 (350)
T 4ay9_X          198 FHGASGPVILDISRT-RIHSLPS--YGLENLKKLRARSTYNLKKLPTLEK--LVALMEAS  252 (350)
T ss_dssp             TTTEECCSEEECTTS-CCCCCCS--SSCTTCCEEECTTCTTCCCCCCTTT--CCSCCEEE
T ss_pred             hccCcccchhhcCCC-CcCccCh--hhhccchHhhhccCCCcCcCCCchh--CcChhhCc
Confidence            355677788888765 5676654  3578899999999999999984322  24555553

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=98.64  E-value=6e-08  Score=82.88  Aligned_cols=141  Identities=13%  Similarity=0.066  Sum_probs=70.3

Q ss_pred             cceeEEEEeecCCCCC-cccchhhcccCCeEEEeecCCceEEecccCccCcccccCCCCccEEEEecCCCCCcCcc---c
Q 026434           34 SITQSVGVYQCRSPPF-NVFHLAYMENLQELELEYCNLEEMKIDSTDEVKKLFQSGFRSLNTVHVFYCQKAKDLTW---L  109 (238)
Q Consensus        34 ~~L~~L~l~~c~~l~~-~~~~l~~l~~L~~L~i~~c~l~~i~~~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~---~  109 (238)
                      ++|+.|++.++. +.. ....+.++++|++|++++|.++.+..+.        ...+++|+.|+++++ +++.++.   +
T Consensus        76 ~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~--------~~~l~~L~~L~L~~n-~l~~l~~~~~~  145 (353)
T 2z80_A           76 VNLQALVLTSNG-INTIEEDSFSSLGSLEHLDLSYNYLSNLSSSW--------FKPLSSLTFLNLLGN-PYKTLGETSLF  145 (353)
T ss_dssp             TTCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSSCCSSCCHHH--------HTTCTTCSEEECTTC-CCSSSCSSCSC
T ss_pred             CCCCEEECCCCc-cCccCHhhcCCCCCCCEEECCCCcCCcCCHhH--------hCCCccCCEEECCCC-CCcccCchhhh
Confidence            567777776652 232 2234566777777777777644332111        124556666666655 4555443   3


Q ss_pred             ccCCCccEEEEecccccceecccccc------------cccccccccccccccccceeeccccccccccCCC-CCCCCCc
Q 026434          110 VFVQNLKKLRIEFCDDVEEIIGVDKL------------RDISEIIGSEHNFFAQLEYLTISWGINLKGVYPN-PLPFPKL  176 (238)
Q Consensus       110 ~~l~~L~~L~i~~C~~l~~l~~~~~~------------~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~~-~~~~~~L  176 (238)
                      ..+++|++|++.++..+..+....-.            ....+.....+..+++|++|++.+.. ++.++.. ...+++|
T Consensus       146 ~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~L  224 (353)
T 2z80_A          146 SHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQ-HILLLEIFVDVTSSV  224 (353)
T ss_dssp             TTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSC-STTHHHHHHHHTTTE
T ss_pred             ccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCc-cccchhhhhhhcccc
Confidence            45666666666665444443211000            00000000234455666666665543 2332211 1136778


Q ss_pred             cEEeEcCcc
Q 026434          177 KKIKVRGCR  185 (238)
Q Consensus       177 ~~L~i~~C~  185 (238)
                      +.|+++++.
T Consensus       225 ~~L~L~~n~  233 (353)
T 2z80_A          225 ECLELRDTD  233 (353)
T ss_dssp             EEEEEESCB
T ss_pred             cEEECCCCc
Confidence            888887763

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=98.64  E-value=1.6e-08  Score=91.46  Aligned_cols=179  Identities=13%  Similarity=0.069  Sum_probs=99.6

Q ss_pred             ccCCCcceeEEeeehHHHHhhhcCchhhcceeEEEEeecCCCCC-c--ccchhhcccCCeEEEeecCCceEEecccC---
Q 026434            6 GLKHLKVLSWSFGSSLAVQKFLKYPKLVSITQSVGVYQCRSPPF-N--VFHLAYMENLQELELEYCNLEEMKIDSTD---   79 (238)
Q Consensus         6 ~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~c~~l~~-~--~~~l~~l~~L~~L~i~~c~l~~i~~~~~~---   79 (238)
                      .+.+|+.|++......   ..... ...++|+.|++.++.- .. .  ...+..+++|+.|++++|.+..+......   
T Consensus       323 ~l~~L~~L~l~~n~~~---~~~~~-~~~~~L~~L~l~~n~l-~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~  397 (570)
T 2z63_A          323 KLKSLKRLTFTSNKGG---NAFSE-VDLPSLEFLDLSRNGL-SFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQ  397 (570)
T ss_dssp             BCSSCCEEEEESCBSC---CBCCC-CBCTTCCEEECCSSCC-BEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTT
T ss_pred             cccccCEEeCcCCccc---ccccc-ccCCCCCEEeCcCCcc-CccccccccccccCccCEEECCCCccccccccccccCC
Confidence            4667777777533211   11111 2235788888877642 21 1  12456677888888877763333221000   


Q ss_pred             ----------ccC---cccccCCCCccEEEEecCCCCCcC-c-ccccCCCccEEEEecccccceeccccccccccccccc
Q 026434           80 ----------EVK---KLFQSGFRSLNTVHVFYCQKAKDL-T-WLVFVQNLKKLRIEFCDDVEEIIGVDKLRDISEIIGS  144 (238)
Q Consensus        80 ----------~~~---~~~~~~l~~L~~L~i~~C~~L~~l-~-~~~~l~~L~~L~i~~C~~l~~l~~~~~~~~~~~~~~~  144 (238)
                                ...   ......+++|+.|++++|. +... + .+..+++|++|++.+|.-....++            .
T Consensus       398 L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p------------~  464 (570)
T 2z63_A          398 LEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH-TRVAFNGIFNGLSSLEVLKMAGNSFQENFLP------------D  464 (570)
T ss_dssp             CCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSC-CEECCTTTTTTCTTCCEEECTTCEEGGGEEC------------S
T ss_pred             CCEEEccCCccccccchhhhhcCCCCCEEeCcCCc-ccccchhhhhcCCcCcEEECcCCcCccccch------------h
Confidence                      000   0123345666666666663 3332 1 245567777777776642211111            3


Q ss_pred             ccccccccceeeccccccccccC-CCCCCCCCccEEeEcCccCCCCCCCCCCCCCCcceEE
Q 026434          145 EHNFFAQLEYLTISWGINLKGVY-PNPLPFPKLKKIKVRGCRHLKKLPLNSSSAKERRVVI  204 (238)
Q Consensus       145 ~~~~~p~L~~L~L~~~~~L~~i~-~~~~~~~~L~~L~i~~C~~L~~lp~~~~~~~~~L~~~  204 (238)
                      .+..+++|+.|+++++ .++++. .....+++|+.|++++| +++.+|...-....+|+.+
T Consensus       465 ~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L  523 (570)
T 2z63_A          465 IFTELRNLTFLDLSQC-QLEQLSPTAFNSLSSLQVLNMASN-QLKSVPDGIFDRLTSLQKI  523 (570)
T ss_dssp             CCTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEE
T ss_pred             hhhcccCCCEEECCCC-ccccCChhhhhcccCCCEEeCCCC-cCCCCCHHHhhcccCCcEE
Confidence            4567889999999887 455553 34456899999999998 6777775543333556655

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=98.62  E-value=7.1e-08  Score=81.20  Aligned_cols=107  Identities=13%  Similarity=0.068  Sum_probs=59.2

Q ss_pred             ccCCCcceeEEeeehHH-HHh-hhcCchhhcceeEEEEeecCCCCCcccchhhc-----ccCCeEEEeecCCceEEeccc
Q 026434            6 GLKHLKVLSWSFGSSLA-VQK-FLKYPKLVSITQSVGVYQCRSPPFNVFHLAYM-----ENLQELELEYCNLEEMKIDST   78 (238)
Q Consensus         6 ~L~~L~~L~i~~~~~~~-l~~-l~~~~~l~~~L~~L~l~~c~~l~~~~~~l~~l-----~~L~~L~i~~c~l~~i~~~~~   78 (238)
                      .+.+|+.|++....... +.. ++  ..-.++|+.|++.++.- ......+..+     ++|++|++++|.+..+..+  
T Consensus        93 ~l~~L~~L~L~~n~l~~~~~~~~~--~~~l~~L~~L~Ls~N~l-~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~--  167 (312)
T 1wwl_A           93 GISGLQELTLENLEVTGTAPPPLL--EATGPDLNILNLRNVSW-ATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCE--  167 (312)
T ss_dssp             TTSCCCEEEEEEEBCBSCCCCCSS--SCCSCCCSEEEEESCBC-SSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTT--
T ss_pred             CcCCccEEEccCCcccchhHHHHH--HhcCCCccEEEccCCCC-cchhHHHHHHHHhhcCCCcEEEeeCCCCccchHH--
Confidence            57888888887544221 111 11  02236788888887642 2211234444     7888888888875444221  


Q ss_pred             CccCcccccCCCCccEEEEecCCCCCcC---ccc--ccCCCccEEEEecc
Q 026434           79 DEVKKLFQSGFRSLNTVHVFYCQKAKDL---TWL--VFVQNLKKLRIEFC  123 (238)
Q Consensus        79 ~~~~~~~~~~l~~L~~L~i~~C~~L~~l---~~~--~~l~~L~~L~i~~C  123 (238)
                            ....+++|+.|+++++.-....   +.+  ..+++|++|++.++
T Consensus       168 ------~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N  211 (312)
T 1wwl_A          168 ------QVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNA  211 (312)
T ss_dssp             ------TCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTS
T ss_pred             ------HhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCC
Confidence                  1234667777777766322111   111  45667777777665

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.62  E-value=2e-08  Score=77.87  Aligned_cols=84  Identities=18%  Similarity=0.240  Sum_probs=42.3

Q ss_pred             ceeEEEEeecCCCCC-cccchhhcccCCeEEEeecC-CceEEecccCccCcccccC----CCCccEEEEecCCCCCc--C
Q 026434           35 ITQSVGVYQCRSPPF-NVFHLAYMENLQELELEYCN-LEEMKIDSTDEVKKLFQSG----FRSLNTVHVFYCQKAKD--L  106 (238)
Q Consensus        35 ~L~~L~l~~c~~l~~-~~~~l~~l~~L~~L~i~~c~-l~~i~~~~~~~~~~~~~~~----l~~L~~L~i~~C~~L~~--l  106 (238)
                      .|+.|++++|. +.. .+..+..+++|++|++++|. +++-.+...        ..    .++|++|+|++|+++++  +
T Consensus        62 ~L~~LDLs~~~-Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L--------~~~~~~~~~L~~L~Ls~C~~ITD~Gl  132 (176)
T 3e4g_A           62 KIQAIDATDSC-IMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERL--------SQLENLQKSMLEMEIISCGNVTDKGI  132 (176)
T ss_dssp             CEEEEEEESCC-CCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHH--------HTCHHHHHHCCEEEEESCTTCCHHHH
T ss_pred             eEeEEeCcCCC-ccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHH--------HhcccccCCCCEEEcCCCCcCCHHHH
Confidence            45666666664 333 34445555666666666665 443211110        11    12456666666655555  2


Q ss_pred             cccccCCCccEEEEecccccc
Q 026434          107 TWLVFVQNLKKLRIEFCDDVE  127 (238)
Q Consensus       107 ~~~~~l~~L~~L~i~~C~~l~  127 (238)
                      ..+..+++|++|++++|+++.
T Consensus       133 ~~L~~~~~L~~L~L~~c~~It  153 (176)
T 3e4g_A          133 IALHHFRNLKYLFLSDLPGVK  153 (176)
T ss_dssp             HHGGGCTTCCEEEEESCTTCC
T ss_pred             HHHhcCCCCCEEECCCCCCCC
Confidence            233455666666666665544

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=98.61  E-value=3.4e-07  Score=73.69  Aligned_cols=123  Identities=12%  Similarity=0.086  Sum_probs=92.3

Q ss_pred             ccCCeEEEeecCCceEEecccCccCcccccCCCCccEEEEecCCCCCcCcc--cccCCCccEEEEecccccceecccccc
Q 026434           58 ENLQELELEYCNLEEMKIDSTDEVKKLFQSGFRSLNTVHVFYCQKAKDLTW--LVFVQNLKKLRIEFCDDVEEIIGVDKL  135 (238)
Q Consensus        58 ~~L~~L~i~~c~l~~i~~~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~--~~~l~~L~~L~i~~C~~l~~l~~~~~~  135 (238)
                      ++|+.|+++++.+..+...        ....+++|+.|+++++ +++.++.  +..+++|++|+++++ ++..+..    
T Consensus        40 ~~L~~L~Ls~n~i~~~~~~--------~~~~l~~L~~L~L~~N-~l~~i~~~~~~~l~~L~~L~Ls~N-~l~~l~~----  105 (229)
T 3e6j_A           40 TNAQILYLHDNQITKLEPG--------VFDSLINLKELYLGSN-QLGALPVGVFDSLTQLTVLDLGTN-QLTVLPS----  105 (229)
T ss_dssp             TTCSEEECCSSCCCCCCTT--------TTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCT----
T ss_pred             CCCCEEEcCCCccCccCHH--------HhhCccCCcEEECCCC-CCCCcChhhcccCCCcCEEECCCC-cCCccCh----
Confidence            7999999999985544222        2346899999999987 5777764  568999999999987 5555432    


Q ss_pred             cccccccccccccccccceeeccccccccccCCCCCCCCCccEEeEcCccCCCCCCCCCCCCCCcceEE
Q 026434          136 RDISEIIGSEHNFFAQLEYLTISWGINLKGVYPNPLPFPKLKKIKVRGCRHLKKLPLNSSSAKERRVVI  204 (238)
Q Consensus       136 ~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~~~~~~~~L~~L~i~~C~~L~~lp~~~~~~~~~L~~~  204 (238)
                              .....+++|+.|++.+. +++.++.....+++|+.|+++++ +++.+|........+|+.+
T Consensus       106 --------~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L  164 (229)
T 3e6j_A          106 --------AVFDRLVHLKELFMCCN-KLTELPRGIERLTHLTHLALDQN-QLKSIPHGAFDRLSSLTHA  164 (229)
T ss_dssp             --------TTTTTCTTCCEEECCSS-CCCSCCTTGGGCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEE
T ss_pred             --------hHhCcchhhCeEeccCC-cccccCcccccCCCCCEEECCCC-cCCccCHHHHhCCCCCCEE
Confidence                    23457899999999875 57778766778899999999987 7788886544334566655

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=98.61  E-value=7.6e-08  Score=86.74  Aligned_cols=157  Identities=19%  Similarity=0.128  Sum_probs=101.5

Q ss_pred             cccCCCcceeEEeeehHH-HHhhhcCchhhcceeEEEEeecCCCCC-cc--cchhhcccCCeEEEeecCCceEEecccCc
Q 026434            5 LGLKHLKVLSWSFGSSLA-VQKFLKYPKLVSITQSVGVYQCRSPPF-NV--FHLAYMENLQELELEYCNLEEMKIDSTDE   80 (238)
Q Consensus         5 ~~L~~L~~L~i~~~~~~~-l~~l~~~~~l~~~L~~L~l~~c~~l~~-~~--~~l~~l~~L~~L~i~~c~l~~i~~~~~~~   80 (238)
                      ..+.+|+.|++....... ...........++|+.|++.++. +.. ..  ..+..+++|+.|++++|.++.++.     
T Consensus       331 ~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~-----  404 (549)
T 2z81_A          331 QHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNH-LRSMQKTGEILLTLKNLTSLDISRNTFHPMPD-----  404 (549)
T ss_dssp             HHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSC-CCCHHHHHHHGGGCTTCCEEECTTCCCCCCCS-----
T ss_pred             hcCccccEEEccCCccccccccchhhhhccccCcEEEccCCc-ccccccchhhhhcCCCCCEEECCCCCCccCCh-----
Confidence            468899999986433221 11111112223689999999874 332 11  236788999999999998655521     


Q ss_pred             cCcccccCCCCccEEEEecCCCCCcCcccccCCCccEEEEecccccceecccccccccccccccccccccccceeecccc
Q 026434           81 VKKLFQSGFRSLNTVHVFYCQKAKDLTWLVFVQNLKKLRIEFCDDVEEIIGVDKLRDISEIIGSEHNFFAQLEYLTISWG  160 (238)
Q Consensus        81 ~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~l~~L~~L~i~~C~~l~~l~~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~  160 (238)
                          ....+++|+.|+++++ +++.++. ..+++|++|++++| ++..++                ..+++|++|+++++
T Consensus       405 ----~~~~~~~L~~L~Ls~N-~l~~l~~-~~~~~L~~L~Ls~N-~l~~~~----------------~~l~~L~~L~Ls~N  461 (549)
T 2z81_A          405 ----SCQWPEKMRFLNLSST-GIRVVKT-CIPQTLEVLDVSNN-NLDSFS----------------LFLPRLQELYISRN  461 (549)
T ss_dssp             ----CCCCCTTCCEEECTTS-CCSCCCT-TSCTTCSEEECCSS-CCSCCC----------------CCCTTCCEEECCSS
T ss_pred             ----hhcccccccEEECCCC-Ccccccc-hhcCCceEEECCCC-Chhhhc----------------ccCChhcEEECCCC
Confidence                2345788999999888 4766543 22468888888887 333321                24678888888776


Q ss_pred             ccccccCCCCCCCCCccEEeEcCccCCCCCCCC
Q 026434          161 INLKGVYPNPLPFPKLKKIKVRGCRHLKKLPLN  193 (238)
Q Consensus       161 ~~L~~i~~~~~~~~~L~~L~i~~C~~L~~lp~~  193 (238)
                       +++.++. ...+++|+.|+++++ +++.+|..
T Consensus       462 -~l~~ip~-~~~l~~L~~L~Ls~N-~l~~~~~~  491 (549)
T 2z81_A          462 -KLKTLPD-ASLFPVLLVMKISRN-QLKSVPDG  491 (549)
T ss_dssp             -CCSSCCC-GGGCTTCCEEECCSS-CCCCCCTT
T ss_pred             -ccCcCCC-cccCccCCEEecCCC-ccCCcCHH
Confidence             5666654 345788888888877 56666644

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=98.60  E-value=2.3e-07  Score=83.18  Aligned_cols=156  Identities=13%  Similarity=0.123  Sum_probs=83.9

Q ss_pred             ceeEEEEeecCCCCCcccchhhcccCCeEEEeecCCceEEecccCccCcccccCCCCccEEEEecCCCCCcCc----ccc
Q 026434           35 ITQSVGVYQCRSPPFNVFHLAYMENLQELELEYCNLEEMKIDSTDEVKKLFQSGFRSLNTVHVFYCQKAKDLT----WLV  110 (238)
Q Consensus        35 ~L~~L~l~~c~~l~~~~~~l~~l~~L~~L~i~~c~l~~i~~~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~----~~~  110 (238)
                      +++.|.+.++.- .. ......+++|++|++++|.+....        +.....+++|+.|+++++ +++.++    .+.
T Consensus       303 ~L~~L~l~~n~l-~~-~~~~~~l~~L~~L~Ls~n~l~~~~--------~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~~  371 (520)
T 2z7x_B          303 NIKNFTVSGTRM-VH-MLCPSKISPFLHLDFSNNLLTDTV--------FENCGHLTELETLILQMN-QLKELSKIAEMTT  371 (520)
T ss_dssp             CCSEEEEESSCC-CC-CCCCSSCCCCCEEECCSSCCCTTT--------TTTCCCCSSCCEEECCSS-CCCBHHHHHHHHT
T ss_pred             ceeEEEcCCCcc-cc-ccchhhCCcccEEEeECCccChhh--------hhhhccCCCCCEEEccCC-ccCccccchHHHh
Confidence            466666666542 11 111245677777777777633211        112234666677776666 455432    245


Q ss_pred             cCCCccEEEEecccccce-ecccc-cc-cccc-------cccccccccc-cccceeeccccccccccCCCCCCCCCccEE
Q 026434          111 FVQNLKKLRIEFCDDVEE-IIGVD-KL-RDIS-------EIIGSEHNFF-AQLEYLTISWGINLKGVYPNPLPFPKLKKI  179 (238)
Q Consensus       111 ~l~~L~~L~i~~C~~l~~-l~~~~-~~-~~~~-------~~~~~~~~~~-p~L~~L~L~~~~~L~~i~~~~~~~~~L~~L  179 (238)
                      .+++|++|+++++. +.. +.... .. ....       .........+ ++|+.|+++++ +++.++.....+++|+.|
T Consensus       372 ~l~~L~~L~Ls~N~-l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N-~l~~ip~~~~~l~~L~~L  449 (520)
T 2z7x_B          372 QMKSLQQLDISQNS-VSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSN-KIKSIPKQVVKLEALQEL  449 (520)
T ss_dssp             TCTTCCEEECCSSC-CBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCCTTCCEEECCSS-CCCCCCGGGGGCTTCCEE
T ss_pred             hCCCCCEEECCCCc-CCcccccchhccCccCCEEECcCCCCCcchhhhhcccCCEEECCCC-cccccchhhhcCCCCCEE
Confidence            66666666666653 222 21100 00 0000       0000111122 68899998877 577777656688999999


Q ss_pred             eEcCccCCCCCCCCCCCCCCcceEE
Q 026434          180 KVRGCRHLKKLPLNSSSAKERRVVI  204 (238)
Q Consensus       180 ~i~~C~~L~~lp~~~~~~~~~L~~~  204 (238)
                      ++++| +++.+|...-....+|+.+
T Consensus       450 ~L~~N-~l~~l~~~~~~~l~~L~~L  473 (520)
T 2z7x_B          450 NVASN-QLKSVPDGIFDRLTSLQKI  473 (520)
T ss_dssp             ECCSS-CCCCCCTTTTTTCTTCCEE
T ss_pred             ECCCC-cCCccCHHHhccCCcccEE
Confidence            99998 6788887633223455544

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=98.59  E-value=3.7e-08  Score=73.67  Aligned_cols=124  Identities=13%  Similarity=0.067  Sum_probs=83.5

Q ss_pred             cceeEEEEeecCCCC-Cccc-chhhcccCCeEEEeecCCceEEecccCccCcccccCCCCccEEEEecCCCCCc-Ccc-c
Q 026434           34 SITQSVGVYQCRSPP-FNVF-HLAYMENLQELELEYCNLEEMKIDSTDEVKKLFQSGFRSLNTVHVFYCQKAKD-LTW-L  109 (238)
Q Consensus        34 ~~L~~L~l~~c~~l~-~~~~-~l~~l~~L~~L~i~~c~l~~i~~~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~-l~~-~  109 (238)
                      ++++.|++.+|.- . ..++ .+..+++|+.|++++|.+..+  .        ....+++|+.|+++++ +++. ++. .
T Consensus        17 ~~l~~L~l~~n~l-~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~--------~~~~l~~L~~L~Ls~n-~i~~~~~~~~   84 (149)
T 2je0_A           17 SDVKELVLDNSRS-NEGKLEGLTDEFEELEFLSTINVGLTSI--A--------NLPKLNKLKKLELSDN-RVSGGLEVLA   84 (149)
T ss_dssp             GGCSEEECTTCBC-BTTBCCSCCTTCTTCCEEECTTSCCCCC--T--------TCCCCTTCCEEECCSS-CCCSCTHHHH
T ss_pred             ccCeEEEccCCcC-ChhHHHHHHhhcCCCcEEECcCCCCCCc--h--------hhhcCCCCCEEECCCC-cccchHHHHh
Confidence            6789999988853 3 1233 357788999999998885544  1        2346889999999887 4666 553 3


Q ss_pred             ccCCCccEEEEecccccceecccccccccccccccccccccccceeeccccccccccCC----CCCCCCCccEEeEc
Q 026434          110 VFVQNLKKLRIEFCDDVEEIIGVDKLRDISEIIGSEHNFFAQLEYLTISWGINLKGVYP----NPLPFPKLKKIKVR  182 (238)
Q Consensus       110 ~~l~~L~~L~i~~C~~l~~l~~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~----~~~~~~~L~~L~i~  182 (238)
                      ..+++|++|+++++. +..+...           ..+..+++|++|+++++ .+++++.    ....+++|+.|+++
T Consensus        85 ~~l~~L~~L~ls~N~-i~~~~~~-----------~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           85 EKCPNLTHLNLSGNK-IKDLSTI-----------EPLKKLENLKSLDLFNC-EVTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             HHCTTCCEEECTTSC-CCSHHHH-----------GGGGGCTTCCEEECTTC-GGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             hhCCCCCEEECCCCc-CCChHHH-----------HHHhhCCCCCEEeCcCC-cccchHHHHHHHHHHCCCcccccCC
Confidence            458999999998874 4332100           24456888999999876 4565543    23457788887764

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=98.59  E-value=1.1e-07  Score=79.98  Aligned_cols=39  Identities=23%  Similarity=0.352  Sum_probs=22.4

Q ss_pred             cccceeeccccccccccCCCCCCCCCccEEeEcCccCCCCCCC
Q 026434          150 AQLEYLTISWGINLKGVYPNPLPFPKLKKIKVRGCRHLKKLPL  192 (238)
Q Consensus       150 p~L~~L~L~~~~~L~~i~~~~~~~~~L~~L~i~~C~~L~~lp~  192 (238)
                      ++|++|+++++ .++.++...  +++|+.|+++++ +++.+|.
T Consensus       251 ~~L~~L~Ls~N-~l~~lp~~~--~~~L~~L~Ls~N-~l~~~~~  289 (310)
T 4glp_A          251 SALNSLNLSFA-GLEQVPKGL--PAKLRVLDLSSN-RLNRAPQ  289 (310)
T ss_dssp             TTCCCEECCSS-CCCSCCSCC--CSCCSCEECCSC-CCCSCCC
T ss_pred             CcCCEEECCCC-CCCchhhhh--cCCCCEEECCCC-cCCCCch
Confidence            57777777654 355554322  367777777666 3455544

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=98.58  E-value=4e-07  Score=72.86  Aligned_cols=127  Identities=14%  Similarity=0.159  Sum_probs=74.4

Q ss_pred             cceeEEEEeecCCCCC-cccchhhcccCCeEEEeecCCceEEecccCccCcccccCCCCccEEEEecCCCCCcCcc--cc
Q 026434           34 SITQSVGVYQCRSPPF-NVFHLAYMENLQELELEYCNLEEMKIDSTDEVKKLFQSGFRSLNTVHVFYCQKAKDLTW--LV  110 (238)
Q Consensus        34 ~~L~~L~l~~c~~l~~-~~~~l~~l~~L~~L~i~~c~l~~i~~~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~--~~  110 (238)
                      ..++.|++.+.. +.. ....+..+++|+.|+++++.+..+..+        ....+++|+.|+++++ +++.++.  +.
T Consensus        32 ~~l~~L~l~~n~-i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~--------~~~~l~~L~~L~Ls~N-~l~~l~~~~f~  101 (220)
T 2v9t_B           32 ETITEIRLEQNT-IKVIPPGAFSPYKKLRRIDLSNNQISELAPD--------AFQGLRSLNSLVLYGN-KITELPKSLFE  101 (220)
T ss_dssp             TTCCEEECCSSC-CCEECTTSSTTCTTCCEEECCSSCCCEECTT--------TTTTCSSCCEEECCSS-CCCCCCTTTTT
T ss_pred             cCCCEEECCCCc-CCCcCHhHhhCCCCCCEEECCCCcCCCcCHH--------HhhCCcCCCEEECCCC-cCCccCHhHcc
Confidence            467777776653 222 222456677777777777775544222        1235677777777766 5666653  35


Q ss_pred             cCCCccEEEEecccccceecccccccccccccccccccccccceeeccccccccccCCC-CCCCCCccEEeEcCc
Q 026434          111 FVQNLKKLRIEFCDDVEEIIGVDKLRDISEIIGSEHNFFAQLEYLTISWGINLKGVYPN-PLPFPKLKKIKVRGC  184 (238)
Q Consensus       111 ~l~~L~~L~i~~C~~l~~l~~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~~-~~~~~~L~~L~i~~C  184 (238)
                      .+++|++|++.++ .+..+.+            ..+..+++|+.|+|.+. .++.+... ...+++|+.|++.+.
T Consensus       102 ~l~~L~~L~L~~N-~l~~~~~------------~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N  162 (220)
T 2v9t_B          102 GLFSLQLLLLNAN-KINCLRV------------DAFQDLHNLNLLSLYDN-KLQTIAKGTFSPLRAIQTMHLAQN  162 (220)
T ss_dssp             TCTTCCEEECCSS-CCCCCCT------------TTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSS
T ss_pred             CCCCCCEEECCCC-CCCEeCH------------HHcCCCCCCCEEECCCC-cCCEECHHHHhCCCCCCEEEeCCC
Confidence            6777777777765 3333321            23445677777777654 35555442 334666777766553

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=98.58  E-value=1.3e-07  Score=80.05  Aligned_cols=88  Identities=18%  Similarity=0.217  Sum_probs=53.2

Q ss_pred             CCccEEEEecCCCCCcCc--ccccCCCccEEEEecccccceecccccccccccccccccccccccceeeccccccccccC
Q 026434           90 RSLNTVHVFYCQKAKDLT--WLVFVQNLKKLRIEFCDDVEEIIGVDKLRDISEIIGSEHNFFAQLEYLTISWGINLKGVY  167 (238)
Q Consensus        90 ~~L~~L~i~~C~~L~~l~--~~~~l~~L~~L~i~~C~~l~~l~~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~  167 (238)
                      ++|+.|+++++ +++.++  .+..+++|++|++.++ .+..+..            ..+..+++|++|++.++ .++.++
T Consensus       193 ~~L~~L~l~~n-~i~~~~~~~l~~l~~L~~L~L~~N-~l~~~~~------------~~~~~l~~L~~L~L~~N-~l~~lp  257 (332)
T 2ft3_A          193 ETLNELHLDHN-KIQAIELEDLLRYSKLYRLGLGHN-QIRMIEN------------GSLSFLPTLRELHLDNN-KLSRVP  257 (332)
T ss_dssp             SSCSCCBCCSS-CCCCCCTTSSTTCTTCSCCBCCSS-CCCCCCT------------TGGGGCTTCCEEECCSS-CCCBCC
T ss_pred             CCCCEEECCCC-cCCccCHHHhcCCCCCCEEECCCC-cCCcCCh------------hHhhCCCCCCEEECCCC-cCeecC
Confidence            34555555444 333332  2345555666655554 2222211            24556788999988876 566777


Q ss_pred             CCCCCCCCccEEeEcCccCCCCCCCC
Q 026434          168 PNPLPFPKLKKIKVRGCRHLKKLPLN  193 (238)
Q Consensus       168 ~~~~~~~~L~~L~i~~C~~L~~lp~~  193 (238)
                      .....+++|+.|+++++ +++.+|..
T Consensus       258 ~~l~~l~~L~~L~l~~N-~l~~~~~~  282 (332)
T 2ft3_A          258 AGLPDLKLLQVVYLHTN-NITKVGVN  282 (332)
T ss_dssp             TTGGGCTTCCEEECCSS-CCCBCCTT
T ss_pred             hhhhcCccCCEEECCCC-CCCccChh
Confidence            66667889999999887 46777654

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=98.58  E-value=4.4e-07  Score=76.64  Aligned_cols=147  Identities=14%  Similarity=0.142  Sum_probs=97.5

Q ss_pred             cceeEEEEeecCCCCC-cccchhhcccCCeEEEeecCCceEEecccCccCcccccCCCCccEEEEecCCCCCcCcccccC
Q 026434           34 SITQSVGVYQCRSPPF-NVFHLAYMENLQELELEYCNLEEMKIDSTDEVKKLFQSGFRSLNTVHVFYCQKAKDLTWLVFV  112 (238)
Q Consensus        34 ~~L~~L~l~~c~~l~~-~~~~l~~l~~L~~L~i~~c~l~~i~~~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~l  112 (238)
                      ++|+.|++.++. +.. ....+.++++|+.|+++++.+......      ......+++|+.|+++++ +++.++. ...
T Consensus       121 ~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~------~~~~~~l~~L~~L~l~~n-~l~~l~~-~~~  191 (330)
T 1xku_A          121 KTLQELRVHENE-ITKVRKSVFNGLNQMIVVELGTNPLKSSGIE------NGAFQGMKKLSYIRIADT-NITTIPQ-GLP  191 (330)
T ss_dssp             TTCCEEECCSSC-CCBBCHHHHTTCTTCCEEECCSSCCCGGGBC------TTGGGGCTTCCEEECCSS-CCCSCCS-SCC
T ss_pred             ccccEEECCCCc-ccccCHhHhcCCccccEEECCCCcCCccCcC------hhhccCCCCcCEEECCCC-ccccCCc-ccc
Confidence            689999998874 232 223467889999999999884321110      112346889999999887 5777653 234


Q ss_pred             CCccEEEEecccccceecccccccccccccccccccccccceeeccccccccccCC-CCCCCCCccEEeEcCccCCCCCC
Q 026434          113 QNLKKLRIEFCDDVEEIIGVDKLRDISEIIGSEHNFFAQLEYLTISWGINLKGVYP-NPLPFPKLKKIKVRGCRHLKKLP  191 (238)
Q Consensus       113 ~~L~~L~i~~C~~l~~l~~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~-~~~~~~~L~~L~i~~C~~L~~lp  191 (238)
                      ++|++|++.++. +..+..            ..+..+++|++|+++++. ++.+.. ....+++|+.|++++| +++.+|
T Consensus       192 ~~L~~L~l~~n~-l~~~~~------------~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~N-~l~~lp  256 (330)
T 1xku_A          192 PSLTELHLDGNK-ITKVDA------------ASLKGLNNLAKLGLSFNS-ISAVDNGSLANTPHLRELHLNNN-KLVKVP  256 (330)
T ss_dssp             TTCSEEECTTSC-CCEECT------------GGGTTCTTCCEEECCSSC-CCEECTTTGGGSTTCCEEECCSS-CCSSCC
T ss_pred             ccCCEEECCCCc-CCccCH------------HHhcCCCCCCEEECCCCc-CceeChhhccCCCCCCEEECCCC-cCccCC
Confidence            889999998873 444421            345567899999998763 555544 3456789999999988 567787


Q ss_pred             CCCCCCCCcceEEE
Q 026434          192 LNSSSAKERRVVIE  205 (238)
Q Consensus       192 ~~~~~~~~~L~~~~  205 (238)
                      ..-.. ...|+.+.
T Consensus       257 ~~l~~-l~~L~~L~  269 (330)
T 1xku_A          257 GGLAD-HKYIQVVY  269 (330)
T ss_dssp             TTTTT-CSSCCEEE
T ss_pred             hhhcc-CCCcCEEE
Confidence            65322 24555553

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=98.57  E-value=1.1e-07  Score=73.31  Aligned_cols=126  Identities=12%  Similarity=0.126  Sum_probs=82.5

Q ss_pred             cceeEEEEeecCCCCCcccchhhcc-cCCeEEEeecCCceEEecccCccCcccccCCCCccEEEEecCCCCCcCcc--cc
Q 026434           34 SITQSVGVYQCRSPPFNVFHLAYME-NLQELELEYCNLEEMKIDSTDEVKKLFQSGFRSLNTVHVFYCQKAKDLTW--LV  110 (238)
Q Consensus        34 ~~L~~L~l~~c~~l~~~~~~l~~l~-~L~~L~i~~c~l~~i~~~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~--~~  110 (238)
                      .+++.|.+.++. +.. ++.+..+. +|+.|++++|.++.+  .        ....+++|+.|+++++ +++.++.  +.
T Consensus        19 ~~L~~L~l~~n~-l~~-i~~~~~~~~~L~~L~Ls~N~l~~~--~--------~l~~l~~L~~L~Ls~N-~l~~~~~~~~~   85 (176)
T 1a9n_A           19 VRDRELDLRGYK-IPV-IENLGATLDQFDAIDFSDNEIRKL--D--------GFPLLRRLKTLLVNNN-RICRIGEGLDQ   85 (176)
T ss_dssp             TSCEEEECTTSC-CCS-CCCGGGGTTCCSEEECCSSCCCEE--C--------CCCCCSSCCEEECCSS-CCCEECSCHHH
T ss_pred             CCceEEEeeCCC-Cch-hHHhhhcCCCCCEEECCCCCCCcc--c--------ccccCCCCCEEECCCC-cccccCcchhh
Confidence            578888888873 332 45555555 899999998886655  1        1245788999999887 5777653  36


Q ss_pred             cCCCccEEEEecccccceecccccccccccccccccccccccceeeccccccccccCCC----CCCCCCccEEeEcCcc
Q 026434          111 FVQNLKKLRIEFCDDVEEIIGVDKLRDISEIIGSEHNFFAQLEYLTISWGINLKGVYPN----PLPFPKLKKIKVRGCR  185 (238)
Q Consensus       111 ~l~~L~~L~i~~C~~l~~l~~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~~----~~~~~~L~~L~i~~C~  185 (238)
                      .+++|++|+++++ .+..+...           ..+..+++|+.|++.+.+ +..++..    ...+|+|+.|++.+++
T Consensus        86 ~l~~L~~L~L~~N-~i~~~~~~-----------~~l~~l~~L~~L~l~~N~-i~~~~~~~~~~~~~l~~L~~Ld~~~n~  151 (176)
T 1a9n_A           86 ALPDLTELILTNN-SLVELGDL-----------DPLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQKVK  151 (176)
T ss_dssp             HCTTCCEEECCSC-CCCCGGGG-----------GGGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred             cCCCCCEEECCCC-cCCcchhh-----------HhhhcCCCCCEEEecCCC-CCCcHhHHHHHHHHCCccceeCCCcCC
Confidence            7889999998887 34433110           244567888888888764 3444332    3346677777665543

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=98.56  E-value=4.9e-07  Score=72.34  Aligned_cols=128  Identities=9%  Similarity=0.095  Sum_probs=79.1

Q ss_pred             cceeEEEEeecCCCCC-c-ccchhhcccCCeEEEeecCCceEEecccCccCcccccCCCCccEEEEecCCCCCcCcc--c
Q 026434           34 SITQSVGVYQCRSPPF-N-VFHLAYMENLQELELEYCNLEEMKIDSTDEVKKLFQSGFRSLNTVHVFYCQKAKDLTW--L  109 (238)
Q Consensus        34 ~~L~~L~l~~c~~l~~-~-~~~l~~l~~L~~L~i~~c~l~~i~~~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~--~  109 (238)
                      ..++.|++.+.. +.. . ...+.++++|+.|+++++.++.+...        ....+++|+.|+++++ +++.++.  +
T Consensus        32 ~~~~~L~L~~N~-l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~--------~~~~l~~L~~L~Ls~N-~l~~~~~~~~  101 (220)
T 2v70_A           32 QYTAELRLNNNE-FTVLEATGIFKKLPQLRKINFSNNKITDIEEG--------AFEGASGVNEILLTSN-RLENVQHKMF  101 (220)
T ss_dssp             TTCSEEECCSSC-CCEECCCCCGGGCTTCCEEECCSSCCCEECTT--------TTTTCTTCCEEECCSS-CCCCCCGGGG
T ss_pred             CCCCEEEcCCCc-CCccCchhhhccCCCCCEEECCCCcCCEECHH--------HhCCCCCCCEEECCCC-ccCccCHhHh
Confidence            456777777653 232 1 12256778888888887776555321        1245778888888776 5666653  5


Q ss_pred             ccCCCccEEEEecccccceecccccccccccccccccccccccceeeccccccccccCC-CCCCCCCccEEeEcCcc
Q 026434          110 VFVQNLKKLRIEFCDDVEEIIGVDKLRDISEIIGSEHNFFAQLEYLTISWGINLKGVYP-NPLPFPKLKKIKVRGCR  185 (238)
Q Consensus       110 ~~l~~L~~L~i~~C~~l~~l~~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~-~~~~~~~L~~L~i~~C~  185 (238)
                      ..+++|++|+++++ .+..+.+            ..+..+++|+.|+|.+. .++.+.. ....+++|+.|++.+.+
T Consensus       102 ~~l~~L~~L~Ls~N-~l~~~~~------------~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~  164 (220)
T 2v70_A          102 KGLESLKTLMLRSN-RITCVGN------------DSFIGLSSVRLLSLYDN-QITTVAPGAFDTLHSLSTLNLLANP  164 (220)
T ss_dssp             TTCSSCCEEECTTS-CCCCBCT------------TSSTTCTTCSEEECTTS-CCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred             cCCcCCCEEECCCC-cCCeECH------------hHcCCCccCCEEECCCC-cCCEECHHHhcCCCCCCEEEecCcC
Confidence            67788888888776 3333321            34456778888888764 4555533 33456777777776543

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=98.56  E-value=1.1e-07  Score=87.11  Aligned_cols=124  Identities=15%  Similarity=0.125  Sum_probs=87.9

Q ss_pred             cceeEEEEeecCCCCCcccchhhcccCCeEEEeecCCceEEecccCccCcccccCCCCccEEEEecCCCCCcCcc-cccC
Q 026434           34 SITQSVGVYQCRSPPFNVFHLAYMENLQELELEYCNLEEMKIDSTDEVKKLFQSGFRSLNTVHVFYCQKAKDLTW-LVFV  112 (238)
Q Consensus        34 ~~L~~L~l~~c~~l~~~~~~l~~l~~L~~L~i~~c~l~~i~~~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~-~~~l  112 (238)
                      .+|+.|++.++.- . ....+..+++|+.|++++|.+..+...        ....+++|+.|+++++ +++.++. ...+
T Consensus       232 ~~L~~L~L~~n~l-~-~~~~l~~l~~L~~L~Ls~N~l~~~~~~--------~~~~l~~L~~L~Ls~N-~l~~l~~~~~~l  300 (597)
T 3oja_B          232 VELTILKLQHNNL-T-DTAWLLNYPGLVEVDLSYNELEKIMYH--------PFVKMQRLERLYISNN-RLVALNLYGQPI  300 (597)
T ss_dssp             SCCCEEECCSSCC-C-CCGGGGGCTTCSEEECCSSCCCEEESG--------GGTTCSSCCEEECTTS-CCCEEECSSSCC
T ss_pred             CCCCEEECCCCCC-C-CChhhccCCCCCEEECCCCccCCCCHH--------HhcCccCCCEEECCCC-CCCCCCcccccC
Confidence            3566676666532 2 235577888899999988885555322        2346889999999887 6777653 3568


Q ss_pred             CCccEEEEecccccceecccccccccccccccccccccccceeeccccccccccCCCCCCCCCccEEeEcCcc
Q 026434          113 QNLKKLRIEFCDDVEEIIGVDKLRDISEIIGSEHNFFAQLEYLTISWGINLKGVYPNPLPFPKLKKIKVRGCR  185 (238)
Q Consensus       113 ~~L~~L~i~~C~~l~~l~~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~~~~~~~~L~~L~i~~C~  185 (238)
                      |+|++|++++|. +..++             ..+..+++|+.|+++++. +..++  ...+++|+.|++.+++
T Consensus       301 ~~L~~L~Ls~N~-l~~i~-------------~~~~~l~~L~~L~L~~N~-l~~~~--~~~~~~L~~L~l~~N~  356 (597)
T 3oja_B          301 PTLKVLDLSHNH-LLHVE-------------RNQPQFDRLENLYLDHNS-IVTLK--LSTHHTLKNLTLSHND  356 (597)
T ss_dssp             TTCCEEECCSSC-CCCCG-------------GGHHHHTTCSEEECCSSC-CCCCC--CCTTCCCSEEECCSSC
T ss_pred             CCCcEEECCCCC-CCccC-------------cccccCCCCCEEECCCCC-CCCcC--hhhcCCCCEEEeeCCC
Confidence            999999998873 44332             344678999999999864 55553  4568999999998875

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=98.55  E-value=6e-07  Score=79.75  Aligned_cols=141  Identities=12%  Similarity=0.101  Sum_probs=94.1

Q ss_pred             hcceeEEEEeecCCCCCcccchhhcccCCeEEEeecCCceEEecccCccCcccccCCCCccEEEEecCCCCCcCcccccC
Q 026434           33 VSITQSVGVYQCRSPPFNVFHLAYMENLQELELEYCNLEEMKIDSTDEVKKLFQSGFRSLNTVHVFYCQKAKDLTWLVFV  112 (238)
Q Consensus        33 ~~~L~~L~l~~c~~l~~~~~~l~~l~~L~~L~i~~c~l~~i~~~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~l  112 (238)
                      .++|+.|++.++. +.. ++.+..+++|++|++++|.++.+.           ...+++|+.|+++++ +++.++ +..+
T Consensus        41 l~~L~~L~Ls~n~-l~~-~~~l~~l~~L~~L~Ls~n~l~~~~-----------~~~l~~L~~L~Ls~N-~l~~~~-~~~l  105 (457)
T 3bz5_A           41 LATLTSLDCHNSS-ITD-MTGIEKLTGLTKLICTSNNITTLD-----------LSQNTNLTYLACDSN-KLTNLD-VTPL  105 (457)
T ss_dssp             HTTCCEEECCSSC-CCC-CTTGGGCTTCSEEECCSSCCSCCC-----------CTTCTTCSEEECCSS-CCSCCC-CTTC
T ss_pred             cCCCCEEEccCCC-ccc-ChhhcccCCCCEEEccCCcCCeEc-----------cccCCCCCEEECcCC-CCceee-cCCC
Confidence            4688999998873 333 457888999999999999865542           246899999999998 588775 7889


Q ss_pred             CCccEEEEecccccceeccccccccc-------ccccccccccccccceeeccccccccccCCCCCCCCCccEEeEcCcc
Q 026434          113 QNLKKLRIEFCDDVEEIIGVDKLRDI-------SEIIGSEHNFFAQLEYLTISWGINLKGVYPNPLPFPKLKKIKVRGCR  185 (238)
Q Consensus       113 ~~L~~L~i~~C~~l~~l~~~~~~~~~-------~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~~~~~~~~L~~L~i~~C~  185 (238)
                      ++|++|++.++ .++.+. .......       .......+..+++|++|++.++..+..+  ....+++|+.|+++++ 
T Consensus       106 ~~L~~L~L~~N-~l~~l~-~~~l~~L~~L~l~~N~l~~l~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n-  180 (457)
T 3bz5_A          106 TKLTYLNCDTN-KLTKLD-VSQNPLLTYLNCARNTLTEIDVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFN-  180 (457)
T ss_dssp             TTCCEEECCSS-CCSCCC-CTTCTTCCEEECTTSCCSCCCCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSS-
T ss_pred             CcCCEEECCCC-cCCeec-CCCCCcCCEEECCCCccceeccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCC-
Confidence            99999999987 444431 1000000       0000023455667777777766655555  2345678888888776 


Q ss_pred             CCCCCCCC
Q 026434          186 HLKKLPLN  193 (238)
Q Consensus       186 ~L~~lp~~  193 (238)
                      +++.+|..
T Consensus       181 ~l~~l~l~  188 (457)
T 3bz5_A          181 KITELDVS  188 (457)
T ss_dssp             CCCCCCCT
T ss_pred             ccceeccc
Confidence            46666633

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=98.55  E-value=2.9e-07  Score=77.50  Aligned_cols=103  Identities=10%  Similarity=-0.064  Sum_probs=50.4

Q ss_pred             cCCCCccEEEEecCCCCC-cCc-ccccCC-CccEEEEecccccceecccc-ccc----------cccccccccccccccc
Q 026434           87 SGFRSLNTVHVFYCQKAK-DLT-WLVFVQ-NLKKLRIEFCDDVEEIIGVD-KLR----------DISEIIGSEHNFFAQL  152 (238)
Q Consensus        87 ~~l~~L~~L~i~~C~~L~-~l~-~~~~l~-~L~~L~i~~C~~l~~l~~~~-~~~----------~~~~~~~~~~~~~p~L  152 (238)
                      ..+++|+.|+++++ +++ .++ .+..++ +|++|++.++. +...++.. ...          ...+.....+..+++|
T Consensus       146 ~~l~~L~~L~L~~N-~l~~~~p~~l~~l~~~L~~L~L~~N~-l~~~~~~~~~~l~L~~L~Ls~N~l~~~~~~~~~~l~~L  223 (313)
T 1ogq_A          146 SSLPNLVGITFDGN-RISGAIPDSYGSFSKLFTSMTISRNR-LTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNT  223 (313)
T ss_dssp             GGCTTCCEEECCSS-CCEEECCGGGGCCCTTCCEEECCSSE-EEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCC
T ss_pred             hcCCCCCeEECcCC-cccCcCCHHHhhhhhcCcEEECcCCe-eeccCChHHhCCcccEEECcCCcccCcCCHHHhcCCCC
Confidence            45667777777665 343 232 344555 67777776653 22111100 000          0000111334456677


Q ss_pred             ceeeccccccccccCCCCCCCCCccEEeEcCccCCCCCCC
Q 026434          153 EYLTISWGINLKGVYPNPLPFPKLKKIKVRGCRHLKKLPL  192 (238)
Q Consensus       153 ~~L~L~~~~~L~~i~~~~~~~~~L~~L~i~~C~~L~~lp~  192 (238)
                      +.|++.++. +.........+++|+.|+++++.--..+|.
T Consensus       224 ~~L~L~~N~-l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~  262 (313)
T 1ogq_A          224 QKIHLAKNS-LAFDLGKVGLSKNLNGLDLRNNRIYGTLPQ  262 (313)
T ss_dssp             SEEECCSSE-ECCBGGGCCCCTTCCEEECCSSCCEECCCG
T ss_pred             CEEECCCCc-eeeecCcccccCCCCEEECcCCcccCcCCh
Confidence            777776543 222211234567888888887754335553

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=98.55  E-value=3.8e-07  Score=80.22  Aligned_cols=115  Identities=14%  Similarity=0.126  Sum_probs=75.5

Q ss_pred             hhhcccCCeEEEeecCCceEEecccCccCcccccCCCCccEEEEecCCCCCcCc--ccccCCCccEEEEecccccceecc
Q 026434           54 LAYMENLQELELEYCNLEEMKIDSTDEVKKLFQSGFRSLNTVHVFYCQKAKDLT--WLVFVQNLKKLRIEFCDDVEEIIG  131 (238)
Q Consensus        54 l~~l~~L~~L~i~~c~l~~i~~~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~--~~~~l~~L~~L~i~~C~~l~~l~~  131 (238)
                      +.++++|+.|++++|.+..+..        .....+++|+.|+++++ +++.+.  .+..+++|++|+++++ .+..+.+
T Consensus       295 ~~~l~~L~~L~Ls~n~l~~~~~--------~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~  364 (455)
T 3v47_A          295 FSHFTDLEQLTLAQNEINKIDD--------NAFWGLTHLLKLNLSQN-FLGSIDSRMFENLDKLEVLDLSYN-HIRALGD  364 (455)
T ss_dssp             TTTCTTCCEEECTTSCCCEECT--------TTTTTCTTCCEEECCSS-CCCEECGGGGTTCTTCCEEECCSS-CCCEECT
T ss_pred             cccCCCCCEEECCCCcccccCh--------hHhcCcccCCEEECCCC-ccCCcChhHhcCcccCCEEECCCC-cccccCh
Confidence            4455666666666665433321        12245677888888777 455553  3456788888888776 3443321


Q ss_pred             cccccccccccccccccccccceeeccccccccccCCCC-CCCCCccEEeEcCccCCCCCC
Q 026434          132 VDKLRDISEIIGSEHNFFAQLEYLTISWGINLKGVYPNP-LPFPKLKKIKVRGCRHLKKLP  191 (238)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~~~-~~~~~L~~L~i~~C~~L~~lp  191 (238)
                                  ..+..+++|++|++.++ ++++++... ..+++|+.|++++++---..|
T Consensus       365 ------------~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~  412 (455)
T 3v47_A          365 ------------QSFLGLPNLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  412 (455)
T ss_dssp             ------------TTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred             ------------hhccccccccEEECCCC-ccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence                        45567899999999985 577776643 568999999999887554444

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=98.54  E-value=2.4e-07  Score=84.56  Aligned_cols=176  Identities=15%  Similarity=0.107  Sum_probs=92.0

Q ss_pred             ccccCCCcceeEEeeehHHHHhhhcCchhhcceeEEEEeecCCCCC-cccchhhcccCCeEEEeecCCceEEecccCccC
Q 026434            4 LLGLKHLKVLSWSFGSSLAVQKFLKYPKLVSITQSVGVYQCRSPPF-NVFHLAYMENLQELELEYCNLEEMKIDSTDEVK   82 (238)
Q Consensus         4 L~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~c~~l~~-~~~~l~~l~~L~~L~i~~c~l~~i~~~~~~~~~   82 (238)
                      +..+.+|+.|++.......+.  .....-.++|+.|.+.++.-... ....+.++++|+.|++++|.+..+....     
T Consensus       297 l~~l~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-----  369 (606)
T 3t6q_A          297 LVGLSTLKKLVLSANKFENLC--QISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCN-----  369 (606)
T ss_dssp             CCSCTTCCEEECTTCCCSBGG--GGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEEST-----
T ss_pred             hcccccCCEEECccCCcCcCc--hhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcc-----
Confidence            445566666665422211110  11122236889999988854322 2234678889999999988855443110     


Q ss_pred             cccccCCCCccEEEEecCCCCCcCc--ccccCCCccEEEEecccccceecccc-----c--------ccccccccccccc
Q 026434           83 KLFQSGFRSLNTVHVFYCQKAKDLT--WLVFVQNLKKLRIEFCDDVEEIIGVD-----K--------LRDISEIIGSEHN  147 (238)
Q Consensus        83 ~~~~~~l~~L~~L~i~~C~~L~~l~--~~~~l~~L~~L~i~~C~~l~~l~~~~-----~--------~~~~~~~~~~~~~  147 (238)
                       .....+++|+.|+++++ ++..+.  .+..+++|++|++.++.- .......     .        .....+.....+.
T Consensus       370 -~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~  446 (606)
T 3t6q_A          370 -LQLRNLSHLQSLNLSYN-EPLSLKTEAFKECPQLELLDLAFTRL-KVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFD  446 (606)
T ss_dssp             -TTTTTCTTCCEEECCSC-SCEEECTTTTTTCTTCSEEECTTCCE-ECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTT
T ss_pred             -hhcccCCCCCEEECCCC-cCCcCCHHHhcCCccCCeEECCCCcC-CCcccchhhhCcccCCEEECCCCccCCcCHHHHh
Confidence             11234556666666555 233321  233455555555555421 1110000     0        0000001113456


Q ss_pred             cccccceeeccccccccc--cC--CCCCCCCCccEEeEcCccCCCCCC
Q 026434          148 FFAQLEYLTISWGINLKG--VY--PNPLPFPKLKKIKVRGCRHLKKLP  191 (238)
Q Consensus       148 ~~p~L~~L~L~~~~~L~~--i~--~~~~~~~~L~~L~i~~C~~L~~lp  191 (238)
                      .+++|++|++.++. +.+  +.  .....+++|+.|++++| +++.++
T Consensus       447 ~l~~L~~L~L~~n~-l~~~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~  492 (606)
T 3t6q_A          447 GLPALQHLNLQGNH-FPKGNIQKTNSLQTLGRLEILVLSFC-DLSSID  492 (606)
T ss_dssp             TCTTCCEEECTTCB-CGGGEECSSCGGGGCTTCCEEECTTS-CCCEEC
T ss_pred             CCCCCCEEECCCCC-CCccccccchhhccCCCccEEECCCC-ccCccC
Confidence            78999999999875 222  11  12456899999999998 345544

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=98.54  E-value=1.5e-07  Score=79.29  Aligned_cols=147  Identities=14%  Similarity=0.026  Sum_probs=82.9

Q ss_pred             hcceeEEEEeecCCCCC-cccchhhcccCCeEEEeecCCceEEecccCccCcccccCCCCccEEEEecCCCCC-cCc-cc
Q 026434           33 VSITQSVGVYQCRSPPF-NVFHLAYMENLQELELEYCNLEEMKIDSTDEVKKLFQSGFRSLNTVHVFYCQKAK-DLT-WL  109 (238)
Q Consensus        33 ~~~L~~L~l~~c~~l~~-~~~~l~~l~~L~~L~i~~c~l~~i~~~~~~~~~~~~~~~l~~L~~L~i~~C~~L~-~l~-~~  109 (238)
                      .++|+.|++.++..+.. ....+.++++|++|++++|.+.....        .....+++|+.|+++++ ++. .++ .+
T Consensus        75 l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p--------~~~~~l~~L~~L~Ls~N-~l~~~~p~~~  145 (313)
T 1ogq_A           75 LPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIP--------DFLSQIKTLVTLDFSYN-ALSGTLPPSI  145 (313)
T ss_dssp             CTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECC--------GGGGGCTTCCEEECCSS-EEESCCCGGG
T ss_pred             CCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCC--------HHHhCCCCCCEEeCCCC-ccCCcCChHH
Confidence            36788888887555443 23357788888899888888442211        12346889999999887 344 333 46


Q ss_pred             ccCCCccEEEEecccccceecccc-ccc--c----------cccccccccccccccceeeccccccccccC-CCCCCCCC
Q 026434          110 VFVQNLKKLRIEFCDDVEEIIGVD-KLR--D----------ISEIIGSEHNFFAQLEYLTISWGINLKGVY-PNPLPFPK  175 (238)
Q Consensus       110 ~~l~~L~~L~i~~C~~l~~l~~~~-~~~--~----------~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~-~~~~~~~~  175 (238)
                      ..+++|++|++.++. +...++.. ...  .          ..+.....+..++ |+.|+++++. ++... .....+++
T Consensus       146 ~~l~~L~~L~L~~N~-l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~-l~~~~~~~~~~l~~  222 (313)
T 1ogq_A          146 SSLPNLVGITFDGNR-ISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNM-LEGDASVLFGSDKN  222 (313)
T ss_dssp             GGCTTCCEEECCSSC-CEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSE-EEECCGGGCCTTSC
T ss_pred             hcCCCCCeEECcCCc-ccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCc-ccCcCCHHHhcCCC
Confidence            788999999998874 33221110 000  0          0000002222333 6666665542 22221 12345778


Q ss_pred             ccEEeEcCccCCCCCC
Q 026434          176 LKKIKVRGCRHLKKLP  191 (238)
Q Consensus       176 L~~L~i~~C~~L~~lp  191 (238)
                      |+.|++.++.--..+|
T Consensus       223 L~~L~L~~N~l~~~~~  238 (313)
T 1ogq_A          223 TQKIHLAKNSLAFDLG  238 (313)
T ss_dssp             CSEEECCSSEECCBGG
T ss_pred             CCEEECCCCceeeecC
Confidence            8888888775433333

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=98.52  E-value=3.9e-07  Score=78.31  Aligned_cols=135  Identities=19%  Similarity=0.129  Sum_probs=94.7

Q ss_pred             hcceeEEEEeecCCCCC-cccchh-hcccCCeEEEeecCCceEEecccCccCcccccCCCCccEEEEecCCCCCcCcc--
Q 026434           33 VSITQSVGVYQCRSPPF-NVFHLA-YMENLQELELEYCNLEEMKIDSTDEVKKLFQSGFRSLNTVHVFYCQKAKDLTW--  108 (238)
Q Consensus        33 ~~~L~~L~l~~c~~l~~-~~~~l~-~l~~L~~L~i~~c~l~~i~~~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~--  108 (238)
                      ...++.|++.+.. +.. ....+. ++++|+.|+++++.+..+..+.        ...+++|+.|+++++ +++.++.  
T Consensus        38 ~~~l~~L~Ls~N~-l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~--------~~~l~~L~~L~Ls~N-~l~~~~~~~  107 (361)
T 2xot_A           38 PSYTALLDLSHNN-LSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEA--------FVPVPNLRYLDLSSN-HLHTLDEFL  107 (361)
T ss_dssp             CTTCSEEECCSSC-CCEECTTSSSSCCTTCCEEECCSSCCCEECTTT--------TTTCTTCCEEECCSS-CCCEECTTT
T ss_pred             CCCCCEEECCCCC-CCccChhhhhhcccccCEEECCCCcCCccChhh--------ccCCCCCCEEECCCC-cCCcCCHHH
Confidence            3568888888763 333 222344 7889999999988866664222        346889999999987 5777654  


Q ss_pred             cccCCCccEEEEecccccceecccccccccccccccccccccccceeeccccccccccCCCC----CCCCCccEEeEcCc
Q 026434          109 LVFVQNLKKLRIEFCDDVEEIIGVDKLRDISEIIGSEHNFFAQLEYLTISWGINLKGVYPNP----LPFPKLKKIKVRGC  184 (238)
Q Consensus       109 ~~~l~~L~~L~i~~C~~l~~l~~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~~~----~~~~~L~~L~i~~C  184 (238)
                      +..+++|++|++.++ .+..+.+            ..+..+++|+.|+|.+. .++.++...    ..+++|+.|++++.
T Consensus       108 ~~~l~~L~~L~L~~N-~i~~~~~------------~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~~~~l~~L~~L~L~~N  173 (361)
T 2xot_A          108 FSDLQALEVLLLYNN-HIVVVDR------------NAFEDMAQLQKLYLSQN-QISRFPVELIKDGNKLPKLMLLDLSSN  173 (361)
T ss_dssp             TTTCTTCCEEECCSS-CCCEECT------------TTTTTCTTCCEEECCSS-CCCSCCGGGTC----CTTCCEEECCSS
T ss_pred             hCCCcCCCEEECCCC-cccEECH------------HHhCCcccCCEEECCCC-cCCeeCHHHhcCcccCCcCCEEECCCC
Confidence            567899999999887 3444421            34567899999999875 566665432    45899999999986


Q ss_pred             cCCCCCCC
Q 026434          185 RHLKKLPL  192 (238)
Q Consensus       185 ~~L~~lp~  192 (238)
                       +++.+|.
T Consensus       174 -~l~~l~~  180 (361)
T 2xot_A          174 -KLKKLPL  180 (361)
T ss_dssp             -CCCCCCH
T ss_pred             -CCCccCH
Confidence             5677773

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=98.52  E-value=1.1e-06  Score=69.27  Aligned_cols=124  Identities=16%  Similarity=0.131  Sum_probs=89.7

Q ss_pred             cccCCeEEEeecCCceEEecccCccCcccccCCCCccEEEEecCCCCCcCcc--cccCCCccEEEEecccccceeccccc
Q 026434           57 MENLQELELEYCNLEEMKIDSTDEVKKLFQSGFRSLNTVHVFYCQKAKDLTW--LVFVQNLKKLRIEFCDDVEEIIGVDK  134 (238)
Q Consensus        57 l~~L~~L~i~~c~l~~i~~~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~--~~~l~~L~~L~i~~C~~l~~l~~~~~  134 (238)
                      .++|++|+++++.++.+..+.        ...+++|+.|+++++ +++.++.  +..+++|++|++.++ .+..+..   
T Consensus        27 ~~~l~~L~l~~n~l~~~~~~~--------~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~---   93 (208)
T 2o6s_A           27 PAQTTYLDLETNSLKSLPNGV--------FDELTSLTQLYLGGN-KLQSLPNGVFNKLTSLTYLNLSTN-QLQSLPN---   93 (208)
T ss_dssp             CTTCSEEECCSSCCCCCCTTT--------TTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCT---
T ss_pred             CCCCcEEEcCCCccCcCChhh--------hcccccCcEEECCCC-ccCccChhhcCCCCCcCEEECCCC-cCCccCH---
Confidence            468999999999865443221        246899999999987 6887764  568899999999987 4444421   


Q ss_pred             ccccccccccccccccccceeeccccccccccCCC-CCCCCCccEEeEcCccCCCCCCCCCCCCCCcceEE
Q 026434          135 LRDISEIIGSEHNFFAQLEYLTISWGINLKGVYPN-PLPFPKLKKIKVRGCRHLKKLPLNSSSAKERRVVI  204 (238)
Q Consensus       135 ~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~~-~~~~~~L~~L~i~~C~~L~~lp~~~~~~~~~L~~~  204 (238)
                               ..+..+++|++|++++. .++++... ...+++|+.|+++++ +++.+|........+|+.+
T Consensus        94 ---------~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L  153 (208)
T 2o6s_A           94 ---------GVFDKLTQLKELALNTN-QLQSLPDGVFDKLTQLKDLRLYQN-QLKSVPDGVFDRLTSLQYI  153 (208)
T ss_dssp             ---------TTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEE
T ss_pred             ---------hHhcCccCCCEEEcCCC-cCcccCHhHhccCCcCCEEECCCC-ccceeCHHHhccCCCccEE
Confidence                     23467899999999876 56776654 356899999999997 5777776543333566655

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=98.51  E-value=2.2e-07  Score=84.60  Aligned_cols=128  Identities=12%  Similarity=0.133  Sum_probs=85.3

Q ss_pred             hcceeEEEEeecCCCCC-cccchhhcccCCeEEEeecCCceEEecccCccCcccccCCCCccEEEEecCCCCCcCcc--c
Q 026434           33 VSITQSVGVYQCRSPPF-NVFHLAYMENLQELELEYCNLEEMKIDSTDEVKKLFQSGFRSLNTVHVFYCQKAKDLTW--L  109 (238)
Q Consensus        33 ~~~L~~L~l~~c~~l~~-~~~~l~~l~~L~~L~i~~c~l~~i~~~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~--~  109 (238)
                      ..++++|++++- .++. ....+.++++|++|++++|.++.+..+.        ...+++|+.|+++++ +++.++.  +
T Consensus        51 p~~~~~LdLs~N-~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~--------f~~L~~L~~L~Ls~N-~l~~l~~~~f  120 (635)
T 4g8a_A           51 PFSTKNLDLSFN-PLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGA--------YQSLSHLSTLILTGN-PIQSLALGAF  120 (635)
T ss_dssp             CTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTCCCCEECTTT--------TTTCTTCCEEECTTC-CCCEECGGGG
T ss_pred             CcCCCEEEeeCC-CCCCCCHHHHhCCCCCCEEECCCCcCCCcChhH--------hcCCCCCCEEEccCC-cCCCCCHHHh
Confidence            357888888764 3343 2235778888888888888866663222        245788888888887 5777753  5


Q ss_pred             ccCCCccEEEEecccccceecccccccccccccccccccccccceeeccccccccccCC--CCCCCCCccEEeEcCc
Q 026434          110 VFVQNLKKLRIEFCDDVEEIIGVDKLRDISEIIGSEHNFFAQLEYLTISWGINLKGVYP--NPLPFPKLKKIKVRGC  184 (238)
Q Consensus       110 ~~l~~L~~L~i~~C~~l~~l~~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~--~~~~~~~L~~L~i~~C  184 (238)
                      ..+++|++|++.++ +++.+..            ..+..+++|++|++.+. .++++..  ....+++|++|++.++
T Consensus       121 ~~L~~L~~L~Ls~N-~l~~l~~------------~~~~~L~~L~~L~Ls~N-~l~~~~~~~~~~~l~~L~~L~L~~N  183 (635)
T 4g8a_A          121 SGLSSLQKLVAVET-NLASLEN------------FPIGHLKTLKELNVAHN-LIQSFKLPEYFSNLTNLEHLDLSSN  183 (635)
T ss_dssp             TTCTTCCEEECTTS-CCCCSTT------------CCCTTCTTCCEEECCSS-CCCCCCCCGGGGGCTTCCEEECCSS
T ss_pred             cCCCCCCEEECCCC-cCCCCCh------------hhhhcCcccCeeccccC-ccccCCCchhhccchhhhhhcccCc
Confidence            67888888888887 4444421            34566788888888765 2333322  2345788888888776

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=98.51  E-value=4.6e-07  Score=81.62  Aligned_cols=129  Identities=15%  Similarity=0.096  Sum_probs=63.7

Q ss_pred             cceeEEEEeecCCCCC-cccchhhcccCCeEEEeecCCceEEecccCccCcccccCCCCccEEEEecCCCCCcCcc--cc
Q 026434           34 SITQSVGVYQCRSPPF-NVFHLAYMENLQELELEYCNLEEMKIDSTDEVKKLFQSGFRSLNTVHVFYCQKAKDLTW--LV  110 (238)
Q Consensus        34 ~~L~~L~l~~c~~l~~-~~~~l~~l~~L~~L~i~~c~l~~i~~~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~--~~  110 (238)
                      ++++.|++.++. +.. ....+.++++|++|++++|.+..+..+.        ...+++|+.|+++++ +++.++.  +.
T Consensus        26 ~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~--------~~~l~~L~~L~Ls~n-~l~~~~~~~~~   95 (549)
T 2z81_A           26 AAMKSLDLSFNK-ITYIGHGDLRACANLQVLILKSSRINTIEGDA--------FYSLGSLEHLDLSDN-HLSSLSSSWFG   95 (549)
T ss_dssp             TTCCEEECCSSC-CCEECSSTTSSCTTCCEEECTTSCCCEECTTT--------TTTCTTCCEEECTTS-CCCSCCHHHHT
T ss_pred             CCccEEECcCCc-cCccChhhhhcCCcccEEECCCCCcCccChhh--------ccccccCCEEECCCC-ccCccCHHHhc
Confidence            466777776664 222 2234566677777777766644442111        234566666666665 4555442  45


Q ss_pred             cCCCccEEEEecccccceecccccccccccccccccccccccceeeccccccccccCC-CCCCCCCccEEeEcCc
Q 026434          111 FVQNLKKLRIEFCDDVEEIIGVDKLRDISEIIGSEHNFFAQLEYLTISWGINLKGVYP-NPLPFPKLKKIKVRGC  184 (238)
Q Consensus       111 ~l~~L~~L~i~~C~~l~~l~~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~-~~~~~~~L~~L~i~~C  184 (238)
                      .+++|++|+++++. +..+...           ..+..+++|++|++.++..+..++. ....+++|+.|++.++
T Consensus        96 ~l~~L~~L~Ls~n~-l~~~~~~-----------~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n  158 (549)
T 2z81_A           96 PLSSLKYLNLMGNP-YQTLGVT-----------SLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKAL  158 (549)
T ss_dssp             TCTTCCEEECTTCC-CSSSCSS-----------CSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEET
T ss_pred             cCCCCcEEECCCCc-ccccchh-----------hhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCC
Confidence            56666666666552 2211000           1233445555555555444444432 2233455555555544

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=98.50  E-value=9.6e-08  Score=88.41  Aligned_cols=164  Identities=17%  Similarity=0.158  Sum_probs=100.0

Q ss_pred             cccccCCCcceeEEeeehHHHHhhhcCchhhcceeEEEEeecCCC--CCcccchhhcccCCeEEEeecCCceEEecccCc
Q 026434            3 ELLGLKHLKVLSWSFGSSLAVQKFLKYPKLVSITQSVGVYQCRSP--PFNVFHLAYMENLQELELEYCNLEEMKIDSTDE   80 (238)
Q Consensus         3 eL~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~c~~l--~~~~~~l~~l~~L~~L~i~~c~l~~i~~~~~~~   80 (238)
                      .+..+.+|+.|++.......+.  .......++|+.|.+.++.--  ......+.++++|+.|++++|.+..+..+.   
T Consensus       425 ~~~~l~~L~~L~Ls~n~l~~~~--~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~---  499 (680)
T 1ziw_A          425 EWRGLENIFEIYLSYNKYLQLT--RNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDM---  499 (680)
T ss_dssp             GGTTCTTCCEEECCSCSEEECC--TTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTT---
T ss_pred             cccCcccccEEecCCCCcceeC--hhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhh---
Confidence            4567888888887533211110  011112357889988887521  111234677889999999988855443221   


Q ss_pred             cCcccccCCCCccEEEEecCCCCCcCc----------ccccCCCccEEEEecccccceeccccccccccccccccccccc
Q 026434           81 VKKLFQSGFRSLNTVHVFYCQKAKDLT----------WLVFVQNLKKLRIEFCDDVEEIIGVDKLRDISEIIGSEHNFFA  150 (238)
Q Consensus        81 ~~~~~~~~l~~L~~L~i~~C~~L~~l~----------~~~~l~~L~~L~i~~C~~l~~l~~~~~~~~~~~~~~~~~~~~p  150 (238)
                           ...+++|+.|+++++ +++.++          .+..+++|++|+++++ ++..+..            .....++
T Consensus       500 -----~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N-~l~~i~~------------~~~~~l~  560 (680)
T 1ziw_A          500 -----LEGLEKLEILDLQHN-NLARLWKHANPGGPIYFLKGLSHLHILNLESN-GFDEIPV------------EVFKDLF  560 (680)
T ss_dssp             -----TTTCTTCCEEECCSS-CCGGGGSTTSTTSCCCTTTTCTTCCEEECCSS-CCCCCCT------------TTTTTCT
T ss_pred             -----hccccccCEEeCCCC-CccccchhhccCCcchhhcCCCCCCEEECCCC-CCCCCCH------------HHccccc
Confidence                 245778888888877 455431          1456788888888776 4443321            2345677


Q ss_pred             ccceeeccccccccccCCCC-CCCCCccEEeEcCccCCCCCCC
Q 026434          151 QLEYLTISWGINLKGVYPNP-LPFPKLKKIKVRGCRHLKKLPL  192 (238)
Q Consensus       151 ~L~~L~L~~~~~L~~i~~~~-~~~~~L~~L~i~~C~~L~~lp~  192 (238)
                      +|+.|++++. +++.++... ..+++|+.|+++++ +++.+|.
T Consensus       561 ~L~~L~Ls~N-~l~~l~~~~~~~l~~L~~L~L~~N-~l~~~~~  601 (680)
T 1ziw_A          561 ELKIIDLGLN-NLNTLPASVFNNQVSLKSLNLQKN-LITSVEK  601 (680)
T ss_dssp             TCCEEECCSS-CCCCCCTTTTTTCTTCCEEECTTS-CCCBCCH
T ss_pred             CcceeECCCC-CCCcCCHhHhCCCCCCCEEECCCC-cCCccCh
Confidence            7888877543 566666543 35677888888776 5555553

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=98.49  E-value=1.3e-07  Score=87.42  Aligned_cols=175  Identities=16%  Similarity=0.153  Sum_probs=93.9

Q ss_pred             ccCCCcceeEEeeehHHHHhhhcCchhhcceeEEEEeecCCCCC-ccc-chhhc------ccCCeEEEeecCCceEEecc
Q 026434            6 GLKHLKVLSWSFGSSLAVQKFLKYPKLVSITQSVGVYQCRSPPF-NVF-HLAYM------ENLQELELEYCNLEEMKIDS   77 (238)
Q Consensus         6 ~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~c~~l~~-~~~-~l~~l------~~L~~L~i~~c~l~~i~~~~   77 (238)
                      ++.+|+.|++......  ..+.....-.++|+.|++.++..+.. .++ .+.++      ++|++|++++|.+..++...
T Consensus       247 ~l~~L~~L~L~~n~l~--~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~  324 (636)
T 4eco_A          247 NLKDLTDVEVYNCPNL--TKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVET  324 (636)
T ss_dssp             GCTTCCEEEEECCTTC--SSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHH
T ss_pred             ccCCCCEEEecCCcCC--ccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchh
Confidence            7888998888744311  11122222235788888888753332 122 24444      78888888888744442100


Q ss_pred             cCccCcccccCCCCccEEEEecCCCCC-cCcccccCCCccEEEEecccccceeccccc---c-c--------cccccccc
Q 026434           78 TDEVKKLFQSGFRSLNTVHVFYCQKAK-DLTWLVFVQNLKKLRIEFCDDVEEIIGVDK---L-R--------DISEIIGS  144 (238)
Q Consensus        78 ~~~~~~~~~~~l~~L~~L~i~~C~~L~-~l~~~~~l~~L~~L~i~~C~~l~~l~~~~~---~-~--------~~~~~~~~  144 (238)
                             ....+++|+.|+++++ +++ .++.+..+++|++|++.++. +..+...-.   . .        .....+ .
T Consensus       325 -------~l~~l~~L~~L~L~~N-~l~g~ip~~~~l~~L~~L~L~~N~-l~~lp~~l~~l~~~L~~L~Ls~N~l~~lp-~  394 (636)
T 4eco_A          325 -------SLQKMKKLGMLECLYN-QLEGKLPAFGSEIKLASLNLAYNQ-ITEIPANFCGFTEQVENLSFAHNKLKYIP-N  394 (636)
T ss_dssp             -------HHTTCTTCCEEECCSC-CCEEECCCCEEEEEESEEECCSSE-EEECCTTSEEECTTCCEEECCSSCCSSCC-S
T ss_pred             -------hhccCCCCCEEeCcCC-cCccchhhhCCCCCCCEEECCCCc-cccccHhhhhhcccCcEEEccCCcCcccc-h
Confidence                   1245667777777666 344 45544555666666666552 222211000   0 0        000011 1


Q ss_pred             cc--ccccccceeeccccccccccCCC-------CCCCCCccEEeEcCccCCCCCCCC
Q 026434          145 EH--NFFAQLEYLTISWGINLKGVYPN-------PLPFPKLKKIKVRGCRHLKKLPLN  193 (238)
Q Consensus       145 ~~--~~~p~L~~L~L~~~~~L~~i~~~-------~~~~~~L~~L~i~~C~~L~~lp~~  193 (238)
                      .+  ..+++|+.|+++++.--..++..       ...+++|+.|+++++ +++.+|..
T Consensus       395 ~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N-~l~~lp~~  451 (636)
T 4eco_A          395 IFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNN-QISKFPKE  451 (636)
T ss_dssp             CCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSS-CCCSCCTH
T ss_pred             hhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCC-ccCcCCHH
Confidence            12  22458999999876422222221       225679999999998 45678864

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=98.49  E-value=2.6e-07  Score=83.52  Aligned_cols=184  Identities=11%  Similarity=0.065  Sum_probs=96.9

Q ss_pred             cccCCCcceeEEeeehHHHHhhhcCchhhcceeEEEEeecCCCCCcccchhhcccCCeEEEeecCCceEEecccCccCcc
Q 026434            5 LGLKHLKVLSWSFGSSLAVQKFLKYPKLVSITQSVGVYQCRSPPFNVFHLAYMENLQELELEYCNLEEMKIDSTDEVKKL   84 (238)
Q Consensus         5 ~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~c~~l~~~~~~l~~l~~L~~L~i~~c~l~~i~~~~~~~~~~~   84 (238)
                      ..+ +|+.|++.......+   ..  ...++|+.|.+.++.....  .....+++|+.|++++|.+..+....      .
T Consensus       302 ~~~-~L~~L~l~~n~~~~l---~~--~~l~~L~~L~l~~n~~~~~--~~~~~~~~L~~L~l~~n~l~~~~~~~------~  367 (570)
T 2z63_A          302 YNF-GWQHLELVNCKFGQF---PT--LKLKSLKRLTFTSNKGGNA--FSEVDLPSLEFLDLSRNGLSFKGCCS------Q  367 (570)
T ss_dssp             SCC-CCSEEEEESCBCSSC---CB--CBCSSCCEEEEESCBSCCB--CCCCBCTTCCEEECCSSCCBEEEEEE------H
T ss_pred             ccC-CccEEeeccCccccc---Cc--ccccccCEEeCcCCccccc--cccccCCCCCEEeCcCCccCcccccc------c
Confidence            345 788888865443322   21  2346899999999864332  22267899999999998854332100      0


Q ss_pred             cccCCCCccEEEEecCCCCCcCc-ccccCCCccEEEEecccccceecccc-----c--------cccccccccccccccc
Q 026434           85 FQSGFRSLNTVHVFYCQKAKDLT-WLVFVQNLKKLRIEFCDDVEEIIGVD-----K--------LRDISEIIGSEHNFFA  150 (238)
Q Consensus        85 ~~~~l~~L~~L~i~~C~~L~~l~-~~~~l~~L~~L~i~~C~~l~~l~~~~-----~--------~~~~~~~~~~~~~~~p  150 (238)
                      ....+++|+.|++++|. +..++ .+..+++|++|++.+|. +....+..     .        .....+.....+..++
T Consensus       368 ~~~~~~~L~~L~l~~n~-l~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~  445 (570)
T 2z63_A          368 SDFGTTSLKYLDLSFNG-VITMSSNFLGLEQLEHLDFQHSN-LKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLS  445 (570)
T ss_dssp             HHHTCSCCCEEECCSCS-EEEEEEEEETCTTCCEEECTTSE-EESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCT
T ss_pred             cccccCccCEEECCCCc-cccccccccccCCCCEEEccCCc-cccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCC
Confidence            11234555555555542 22222 13344444444444432 11110000     0        0000000013455688


Q ss_pred             ccceeeccccccc-cccCCCCCCCCCccEEeEcCccCCCCCCCCCCCCCCcceEEE
Q 026434          151 QLEYLTISWGINL-KGVYPNPLPFPKLKKIKVRGCRHLKKLPLNSSSAKERRVVIE  205 (238)
Q Consensus       151 ~L~~L~L~~~~~L-~~i~~~~~~~~~L~~L~i~~C~~L~~lp~~~~~~~~~L~~~~  205 (238)
                      +|++|++.++.-- ..++.....+++|+.|++++|. ++.++...-...++|+.+.
T Consensus       446 ~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~  500 (570)
T 2z63_A          446 SLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ-LEQLSPTAFNSLSSLQVLN  500 (570)
T ss_dssp             TCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEE
T ss_pred             cCcEEECcCCcCccccchhhhhcccCCCEEECCCCc-cccCChhhhhcccCCCEEe
Confidence            9999999887633 2455556678999999999984 4555322222234565553

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=98.49  E-value=2.1e-07  Score=83.45  Aligned_cols=41  Identities=20%  Similarity=0.113  Sum_probs=32.3

Q ss_pred             ccccccccceeeccccccccccCCC-CCCCCCccEEeEcCccC
Q 026434          145 EHNFFAQLEYLTISWGINLKGVYPN-PLPFPKLKKIKVRGCRH  186 (238)
Q Consensus       145 ~~~~~p~L~~L~L~~~~~L~~i~~~-~~~~~~L~~L~i~~C~~  186 (238)
                      .+..+++|++|+++++ +++.++.. ...+++|+.|++.+++-
T Consensus       439 ~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~l~~N~~  480 (520)
T 2z7x_B          439 QVVKLEALQELNVASN-QLKSVPDGIFDRLTSLQKIWLHTNPW  480 (520)
T ss_dssp             GGGGCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred             hhhcCCCCCEEECCCC-cCCccCHHHhccCCcccEEECcCCCC
Confidence            3457899999999987 67887765 45688899999888763

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=98.49  E-value=2.5e-07  Score=70.49  Aligned_cols=111  Identities=18%  Similarity=0.215  Sum_probs=82.6

Q ss_pred             cccCCeEEEeecCCc--eEEecccCccCcccccCCCCccEEEEecCCCCCcCcccccCCCccEEEEecccccceeccccc
Q 026434           57 MENLQELELEYCNLE--EMKIDSTDEVKKLFQSGFRSLNTVHVFYCQKAKDLTWLVFVQNLKKLRIEFCDDVEEIIGVDK  134 (238)
Q Consensus        57 l~~L~~L~i~~c~l~--~i~~~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~l~~L~~L~i~~C~~l~~l~~~~~  134 (238)
                      .++|+.|++++|.+.  .+.         .....+++|+.|++++|. ++.+..+..+++|++|+++++. +...++   
T Consensus        23 ~~~L~~L~l~~n~l~~~~i~---------~~~~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~Ls~N~-l~~~~~---   88 (168)
T 2ell_A           23 PAAVRELVLDNCKSNDGKIE---------GLTAEFVNLEFLSLINVG-LISVSNLPKLPKLKKLELSENR-IFGGLD---   88 (168)
T ss_dssp             TTSCSEEECCSCBCBTTBCS---------SCCGGGGGCCEEEEESSC-CCCCSSCCCCSSCCEEEEESCC-CCSCCC---
T ss_pred             cccCCEEECCCCCCChhhHH---------HHHHhCCCCCEEeCcCCC-CCChhhhccCCCCCEEECcCCc-CchHHH---
Confidence            478999999999844  442         122468999999999984 8887777889999999999884 333211   


Q ss_pred             ccccccccccccccccccceeeccccccccccC--CCCCCCCCccEEeEcCccCCCCCCC
Q 026434          135 LRDISEIIGSEHNFFAQLEYLTISWGINLKGVY--PNPLPFPKLKKIKVRGCRHLKKLPL  192 (238)
Q Consensus       135 ~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~--~~~~~~~~L~~L~i~~C~~L~~lp~  192 (238)
                               .....+++|++|+++++ .+++++  .....+++|+.|++++++ +..+|.
T Consensus        89 ---------~~~~~l~~L~~L~Ls~N-~l~~~~~~~~l~~l~~L~~L~l~~N~-l~~~~~  137 (168)
T 2ell_A           89 ---------MLAEKLPNLTHLNLSGN-KLKDISTLEPLKKLECLKSLDLFNCE-VTNLND  137 (168)
T ss_dssp             ---------HHHHHCTTCCEEECBSS-SCCSSGGGGGGSSCSCCCEEECCSSG-GGTSTT
T ss_pred             ---------HHHhhCCCCCEEeccCC-ccCcchhHHHHhcCCCCCEEEeeCCc-CcchHH
Confidence                     23345899999999987 566654  234568999999999984 556664

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=98.48  E-value=1.6e-07  Score=84.15  Aligned_cols=186  Identities=12%  Similarity=0.055  Sum_probs=100.0

Q ss_pred             cCCCcceeEEeeehHHHHhhhcCchhhcceeEEEEeecCCCCCcccchhhcccCCeEEEeecCCceEEec---------c
Q 026434            7 LKHLKVLSWSFGSSLAVQKFLKYPKLVSITQSVGVYQCRSPPFNVFHLAYMENLQELELEYCNLEEMKID---------S   77 (238)
Q Consensus         7 L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~c~~l~~~~~~l~~l~~L~~L~i~~c~l~~i~~~---------~   77 (238)
                      +.+|+.|+++......+.  .....-.++|+.|++.++. +.. ...+..+++|+.|++++|.+..+...         .
T Consensus        33 ~~~L~~L~Ls~n~l~~~~--~~~~~~l~~L~~L~Ls~N~-l~~-~~~l~~l~~L~~L~Ls~N~l~~l~~~~~L~~L~L~~  108 (487)
T 3oja_A           33 AWNVKELDLSGNPLSQIS--AADLAPFTKLELLNLSSNV-LYE-TLDLESLSTLRTLDLNNNYVQELLVGPSIETLHAAN  108 (487)
T ss_dssp             GGGCCEEECCSSCCCCCC--GGGGTTCTTCCEEECTTSC-CEE-EEECTTCTTCCEEECCSSEEEEEEECTTCCEEECCS
T ss_pred             CCCccEEEeeCCcCCCCC--HHHHhCCCCCCEEEeeCCC-CCC-CcccccCCCCCEEEecCCcCCCCCCCCCcCEEECcC
Confidence            447888887643322211  0111123578888888764 222 23377778888888887764444321         1


Q ss_pred             cCccCcccccCCCCccEEEEecCCCCCcCc--ccccCCCccEEEEecccccceecccccc---cc----------ccccc
Q 026434           78 TDEVKKLFQSGFRSLNTVHVFYCQKAKDLT--WLVFVQNLKKLRIEFCDDVEEIIGVDKL---RD----------ISEII  142 (238)
Q Consensus        78 ~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~--~~~~l~~L~~L~i~~C~~l~~l~~~~~~---~~----------~~~~~  142 (238)
                      ... .......+++|+.|+++++ +++.++  .+..+++|++|+++++ .+..+++..-.   ..          ..+. 
T Consensus       109 N~l-~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~-  184 (487)
T 3oja_A          109 NNI-SRVSCSRGQGKKNIYLANN-KITMLRDLDEGCRSRVQYLDLKLN-EIDTVNFAELAASSDTLEHLNLQYNFIYDV-  184 (487)
T ss_dssp             SCC-CCEEECCCSSCEEEECCSS-CCCSGGGBCGGGGSSEEEEECTTS-CCCEEEGGGGGGGTTTCCEEECTTSCCCEE-
T ss_pred             CcC-CCCCccccCCCCEEECCCC-CCCCCCchhhcCCCCCCEEECCCC-CCCCcChHHHhhhCCcccEEecCCCccccc-
Confidence            000 0111234677777777776 455543  2455777777777765 33332211000   00          0000 


Q ss_pred             ccccccccccceeeccccccccccCCCCCCCCCccEEeEcCccCCCCCCCCCCCCCCcceEE
Q 026434          143 GSEHNFFAQLEYLTISWGINLKGVYPNPLPFPKLKKIKVRGCRHLKKLPLNSSSAKERRVVI  204 (238)
Q Consensus       143 ~~~~~~~p~L~~L~L~~~~~L~~i~~~~~~~~~L~~L~i~~C~~L~~lp~~~~~~~~~L~~~  204 (238)
                       .....+++|+.|+++++ .+++++.....+++|+.|+++++ ++..+|..... .+.|..+
T Consensus       185 -~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~l~~-l~~L~~L  242 (487)
T 3oja_A          185 -KGQVVFAKLKTLDLSSN-KLAFMGPEFQSAAGVTWISLRNN-KLVLIEKALRF-SQNLEHF  242 (487)
T ss_dssp             -ECCCCCTTCCEEECCSS-CCCEECGGGGGGTTCSEEECTTS-CCCEECTTCCC-CTTCCEE
T ss_pred             -cccccCCCCCEEECCCC-CCCCCCHhHcCCCCccEEEecCC-cCcccchhhcc-CCCCCEE
Confidence             12234677777777765 45666555556788999998886 46667755322 2455555

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=98.47  E-value=1.8e-06  Score=73.81  Aligned_cols=159  Identities=14%  Similarity=0.049  Sum_probs=92.6

Q ss_pred             cceeEEEEeecCCCCC-cccchhhcccCCeEEEeecC-CceEEecccCcc-----------------CcccccCCCCccE
Q 026434           34 SITQSVGVYQCRSPPF-NVFHLAYMENLQELELEYCN-LEEMKIDSTDEV-----------------KKLFQSGFRSLNT   94 (238)
Q Consensus        34 ~~L~~L~l~~c~~l~~-~~~~l~~l~~L~~L~i~~c~-l~~i~~~~~~~~-----------------~~~~~~~l~~L~~   94 (238)
                      +++++|++.+. .++. ....+.++++|++|++++|. ++.+..+.....                 .+.....+++|+.
T Consensus        30 ~~l~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~  108 (350)
T 4ay9_X           30 RNAIELRFVLT-KLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQY  108 (350)
T ss_dssp             TTCSEEEEESC-CCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCE
T ss_pred             CCCCEEEccCC-cCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhcccccc
Confidence            56777777764 3333 22235677778888888777 555432221100                 0112245667777


Q ss_pred             EEEecCCCCCcCcccc--cCCCccEEEEecccccceecccccc-------------cccccccccccccccccceeeccc
Q 026434           95 VHVFYCQKAKDLTWLV--FVQNLKKLRIEFCDDVEEIIGVDKL-------------RDISEIIGSEHNFFAQLEYLTISW  159 (238)
Q Consensus        95 L~i~~C~~L~~l~~~~--~l~~L~~L~i~~C~~l~~l~~~~~~-------------~~~~~~~~~~~~~~p~L~~L~L~~  159 (238)
                      |+++++ +++.++...  ...++..|.+.++.++..+....-.             ....++. ......++|+.|.+.+
T Consensus       109 L~l~~n-~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~-~~~f~~~~L~~l~l~~  186 (350)
T 4ay9_X          109 LLISNT-GIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIH-NSAFNGTQLDELNLSD  186 (350)
T ss_dssp             EEEEEE-CCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEEC-TTSSTTEEEEEEECTT
T ss_pred             cccccc-ccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCC-hhhccccchhHHhhcc
Confidence            777766 455554322  3345566666666666555321100             0001111 2233456788888888


Q ss_pred             cccccccCCCC-CCCCCccEEeEcCccCCCCCCCCCCC
Q 026434          160 GINLKGVYPNP-LPFPKLKKIKVRGCRHLKKLPLNSSS  196 (238)
Q Consensus       160 ~~~L~~i~~~~-~~~~~L~~L~i~~C~~L~~lp~~~~~  196 (238)
                      ...++.++.+. ..+++|+.|+++++ +++.+|...-.
T Consensus       187 ~n~l~~i~~~~f~~l~~L~~LdLs~N-~l~~lp~~~~~  223 (350)
T 4ay9_X          187 NNNLEELPNDVFHGASGPVILDISRT-RIHSLPSYGLE  223 (350)
T ss_dssp             CTTCCCCCTTTTTTEECCSEEECTTS-CCCCCCSSSCT
T ss_pred             CCcccCCCHHHhccCcccchhhcCCC-CcCccChhhhc
Confidence            88888888654 56789999999987 68899876543

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=98.47  E-value=2.3e-07  Score=88.73  Aligned_cols=109  Identities=16%  Similarity=0.158  Sum_probs=64.3

Q ss_pred             ccCCCcceeEEeeehHHHHhhhcCchhhcceeEEEEeecCCCCC-ccc-chhhc-------ccCCeEEEeecCCceEEec
Q 026434            6 GLKHLKVLSWSFGSSLAVQKFLKYPKLVSITQSVGVYQCRSPPF-NVF-HLAYM-------ENLQELELEYCNLEEMKID   76 (238)
Q Consensus         6 ~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~c~~l~~-~~~-~l~~l-------~~L~~L~i~~c~l~~i~~~   76 (238)
                      ++.+|+.|++......  ..+.....-.++|+.|++.++..+.. .++ .+.++       ++|+.|++++|.+..++..
T Consensus       489 ~L~~L~~L~Ls~N~l~--~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~  566 (876)
T 4ecn_A          489 NLKDLTDVELYNCPNM--TQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPAS  566 (876)
T ss_dssp             GCTTCCEEEEESCTTC--CSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCH
T ss_pred             cCCCCCEEECcCCCCC--ccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCCh
Confidence            7888998888643211  11111112235788888887753332 122 23444       3888888888885444210


Q ss_pred             ccCccCcccccCCCCccEEEEecCCCCCcCcccccCCCccEEEEeccc
Q 026434           77 STDEVKKLFQSGFRSLNTVHVFYCQKAKDLTWLVFVQNLKKLRIEFCD  124 (238)
Q Consensus        77 ~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~l~~L~~L~i~~C~  124 (238)
                             .....+++|+.|+++++ +++.++.+..+++|++|+++++.
T Consensus       567 -------~~l~~L~~L~~L~Ls~N-~l~~lp~~~~L~~L~~L~Ls~N~  606 (876)
T 4ecn_A          567 -------ASLQKMVKLGLLDCVHN-KVRHLEAFGTNVKLTDLKLDYNQ  606 (876)
T ss_dssp             -------HHHTTCTTCCEEECTTS-CCCBCCCCCTTSEESEEECCSSC
T ss_pred             -------hhhhcCCCCCEEECCCC-CcccchhhcCCCcceEEECcCCc
Confidence                   01345777777777776 45566666677777777777663

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=98.47  E-value=1.6e-07  Score=88.54  Aligned_cols=146  Identities=12%  Similarity=-0.034  Sum_probs=75.4

Q ss_pred             cceeEEEEeecCCCCCcccchhhcccCCeEEEeecC-CceEEecccC-------------c--cCcccccCCCCccEEEE
Q 026434           34 SITQSVGVYQCRSPPFNVFHLAYMENLQELELEYCN-LEEMKIDSTD-------------E--VKKLFQSGFRSLNTVHV   97 (238)
Q Consensus        34 ~~L~~L~l~~c~~l~~~~~~l~~l~~L~~L~i~~c~-l~~i~~~~~~-------------~--~~~~~~~~l~~L~~L~i   97 (238)
                      ++|+.|++.+|.-.......+.++++|+.|++++|. ...++.....             .  ..+.....+++|+.|++
T Consensus       394 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L  473 (768)
T 3rgz_A          394 NTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLIL  473 (768)
T ss_dssp             CCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEEC
T ss_pred             CCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEe
Confidence            456777766663211112245566667777666665 2221100000             0  00111233455555555


Q ss_pred             ecCCCCC-cCc-ccccCCCccEEEEecccccceecccccccccccccccccccccccceeeccccccccccCCCCCCCCC
Q 026434           98 FYCQKAK-DLT-WLVFVQNLKKLRIEFCDDVEEIIGVDKLRDISEIIGSEHNFFAQLEYLTISWGINLKGVYPNPLPFPK  175 (238)
Q Consensus        98 ~~C~~L~-~l~-~~~~l~~L~~L~i~~C~~l~~l~~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~~~~~~~~  175 (238)
                      ++|. +. .++ ++..+++|++|++.+|.-...+ +            ..+..+++|+.|+++++.--..++.....+++
T Consensus       474 ~~N~-l~~~~p~~l~~l~~L~~L~L~~N~l~~~~-p------------~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~  539 (768)
T 3rgz_A          474 DFND-LTGEIPSGLSNCTNLNWISLSNNRLTGEI-P------------KWIGRLENLAILKLSNNSFSGNIPAELGDCRS  539 (768)
T ss_dssp             CSSC-CCSCCCGGGGGCTTCCEEECCSSCCCSCC-C------------GGGGGCTTCCEEECCSSCCEEECCGGGGGCTT
T ss_pred             cCCc-ccCcCCHHHhcCCCCCEEEccCCccCCcC-C------------hHHhcCCCCCEEECCCCcccCcCCHHHcCCCC
Confidence            5552 32 222 3445555555555555321111 1            34556788888888877544455555566788


Q ss_pred             ccEEeEcCccCCCCCCCC
Q 026434          176 LKKIKVRGCRHLKKLPLN  193 (238)
Q Consensus       176 L~~L~i~~C~~L~~lp~~  193 (238)
                      |+.|++.+|+--..+|..
T Consensus       540 L~~L~Ls~N~l~g~ip~~  557 (768)
T 3rgz_A          540 LIWLDLNTNLFNGTIPAA  557 (768)
T ss_dssp             CCEEECCSSEEESBCCGG
T ss_pred             CCEEECCCCccCCcCChH
Confidence            888888888766566643

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.47  E-value=6.8e-08  Score=74.86  Aligned_cols=39  Identities=15%  Similarity=0.003  Sum_probs=17.3

Q ss_pred             ccceeeccccccccccCC-CCCCCCCccEEeEcCccCCCC
Q 026434          151 QLEYLTISWGINLKGVYP-NPLPFPKLKKIKVRGCRHLKK  189 (238)
Q Consensus       151 ~L~~L~L~~~~~L~~i~~-~~~~~~~L~~L~i~~C~~L~~  189 (238)
                      +|++|+|++|+++++-.. ....+++|+.|++++|++++.
T Consensus       115 ~L~~L~Ls~C~~ITD~Gl~~L~~~~~L~~L~L~~c~~Itd  154 (176)
T 3e4g_A          115 SMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDLPGVKE  154 (176)
T ss_dssp             HCCEEEEESCTTCCHHHHHHGGGCTTCCEEEEESCTTCCC
T ss_pred             CCCEEEcCCCCcCCHHHHHHHhcCCCCCEEECCCCCCCCc
Confidence            444444444444433111 011245555555555555543

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=98.46  E-value=4.4e-07  Score=74.73  Aligned_cols=128  Identities=12%  Similarity=0.144  Sum_probs=75.3

Q ss_pred             hcceeEEEEeecCCCCC-cccchhhcccCCeEEEeecCCceEEecccCccCcccccCCCCccEEEEecCCCCCcCc--cc
Q 026434           33 VSITQSVGVYQCRSPPF-NVFHLAYMENLQELELEYCNLEEMKIDSTDEVKKLFQSGFRSLNTVHVFYCQKAKDLT--WL  109 (238)
Q Consensus        33 ~~~L~~L~l~~c~~l~~-~~~~l~~l~~L~~L~i~~c~l~~i~~~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~--~~  109 (238)
                      ..+++.|++.++. +.. ....+.++++|+.|++++|.+..+....        ...+++|+.|+++++ +++.++  .+
T Consensus        27 ~~~l~~L~ls~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~--------~~~l~~L~~L~L~~n-~l~~~~~~~~   96 (276)
T 2z62_A           27 PFSTKNLDLSFNP-LRHLGSYSFFSFPELQVLDLSRCEIQTIEDGA--------YQSLSHLSTLILTGN-PIQSLALGAF   96 (276)
T ss_dssp             CTTCCEEECTTCC-CCEECTTTTTTCTTCSEEECTTCCCCEECTTT--------TTTCTTCCEEECTTC-CCCEECTTTT
T ss_pred             CCCccEEECCCCc-ccccCHhHhccccCCcEEECCCCcCCccCHHH--------ccCCcCCCEEECCCC-ccCccChhhh
Confidence            3579999998874 333 2236788899999999999866553221        245778888888776 455543  35


Q ss_pred             ccCCCccEEEEecccccceecccccccccccccccccccccccceeeccccccccc--cCCCCCCCCCccEEeEcCc
Q 026434          110 VFVQNLKKLRIEFCDDVEEIIGVDKLRDISEIIGSEHNFFAQLEYLTISWGINLKG--VYPNPLPFPKLKKIKVRGC  184 (238)
Q Consensus       110 ~~l~~L~~L~i~~C~~l~~l~~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~--i~~~~~~~~~L~~L~i~~C  184 (238)
                      ..+++|++|++.++. +..+..            ..+..+++|++|++.+.. +++  ++.....+++|+.|+++++
T Consensus        97 ~~l~~L~~L~l~~n~-l~~~~~------------~~~~~l~~L~~L~l~~n~-l~~~~l~~~~~~l~~L~~L~Ls~N  159 (276)
T 2z62_A           97 SGLSSLQKLVAVETN-LASLEN------------FPIGHLKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLDLSSN  159 (276)
T ss_dssp             TTCTTCCEEECTTSC-CCCSTT------------CCCTTCTTCCEEECCSSC-CCCCCCCGGGGGCTTCCEEECCSS
T ss_pred             cCCccccEEECCCCC-ccccCc------------hhcccCCCCCEEECcCCc-cceecCchhhccCCCCCEEECCCC
Confidence            567788888777652 222211            123445556666555432 222  1222233455555555554

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=98.45  E-value=1.7e-07  Score=69.99  Aligned_cols=111  Identities=17%  Similarity=0.192  Sum_probs=82.2

Q ss_pred             cccCCeEEEeecCCc--eEEecccCccCcccccCCCCccEEEEecCCCCCcCcccccCCCccEEEEecccccceeccccc
Q 026434           57 MENLQELELEYCNLE--EMKIDSTDEVKKLFQSGFRSLNTVHVFYCQKAKDLTWLVFVQNLKKLRIEFCDDVEEIIGVDK  134 (238)
Q Consensus        57 l~~L~~L~i~~c~l~--~i~~~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~l~~L~~L~i~~C~~l~~l~~~~~  134 (238)
                      .++|+.|++++|.+.  .+.         .....+++|+.|++++| +++.+..+..+++|++|+++++. +...++   
T Consensus        16 ~~~l~~L~l~~n~l~~~~~~---------~~~~~l~~L~~L~l~~n-~l~~~~~~~~l~~L~~L~Ls~n~-i~~~~~---   81 (149)
T 2je0_A           16 PSDVKELVLDNSRSNEGKLE---------GLTDEFEELEFLSTINV-GLTSIANLPKLNKLKKLELSDNR-VSGGLE---   81 (149)
T ss_dssp             GGGCSEEECTTCBCBTTBCC---------SCCTTCTTCCEEECTTS-CCCCCTTCCCCTTCCEEECCSSC-CCSCTH---
T ss_pred             CccCeEEEccCCcCChhHHH---------HHHhhcCCCcEEECcCC-CCCCchhhhcCCCCCEEECCCCc-ccchHH---
Confidence            478999999999844  442         12356899999999998 68887777889999999999874 333211   


Q ss_pred             ccccccccccccccccccceeeccccccccccC--CCCCCCCCccEEeEcCccCCCCCCC
Q 026434          135 LRDISEIIGSEHNFFAQLEYLTISWGINLKGVY--PNPLPFPKLKKIKVRGCRHLKKLPL  192 (238)
Q Consensus       135 ~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~--~~~~~~~~L~~L~i~~C~~L~~lp~  192 (238)
                               .....+++|++|+++++. +++++  .....+++|+.|++++| .++.+|.
T Consensus        82 ---------~~~~~l~~L~~L~ls~N~-i~~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~  130 (149)
T 2je0_A           82 ---------VLAEKCPNLTHLNLSGNK-IKDLSTIEPLKKLENLKSLDLFNC-EVTNLND  130 (149)
T ss_dssp             ---------HHHHHCTTCCEEECTTSC-CCSHHHHGGGGGCTTCCEEECTTC-GGGGSTT
T ss_pred             ---------HHhhhCCCCCEEECCCCc-CCChHHHHHHhhCCCCCEEeCcCC-cccchHH
Confidence                     233458999999998764 55543  33456899999999998 4666664

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=98.44  E-value=5.3e-07  Score=80.04  Aligned_cols=136  Identities=16%  Similarity=0.125  Sum_probs=73.2

Q ss_pred             cceeEEEEeecCCCCCcccchhhcccCCeEEEeecCCceEEecccCccCcccccCCCCccEEEEecCCCCCcCcccccCC
Q 026434           34 SITQSVGVYQCRSPPFNVFHLAYMENLQELELEYCNLEEMKIDSTDEVKKLFQSGFRSLNTVHVFYCQKAKDLTWLVFVQ  113 (238)
Q Consensus        34 ~~L~~L~l~~c~~l~~~~~~l~~l~~L~~L~i~~c~l~~i~~~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~l~  113 (238)
                      ++|+.|++.++. +.. ++.+.++++|++|++++|.++.+.            ..+++|+.|+++++ +++.++.+..++
T Consensus       131 ~~L~~L~L~~n~-l~~-lp~~~~l~~L~~L~l~~N~l~~lp------------~~~~~L~~L~L~~n-~l~~l~~~~~l~  195 (454)
T 1jl5_A          131 PLLEYLGVSNNQ-LEK-LPELQNSSFLKIIDVDNNSLKKLP------------DLPPSLEFIAAGNN-QLEELPELQNLP  195 (454)
T ss_dssp             TTCCEEECCSSC-CSS-CCCCTTCTTCCEEECCSSCCSCCC------------CCCTTCCEEECCSS-CCSSCCCCTTCT
T ss_pred             CCCCEEECcCCC-CCC-CcccCCCCCCCEEECCCCcCcccC------------CCcccccEEECcCC-cCCcCccccCCC
Confidence            356666665552 222 344566666777776666643331            12347777777776 566666666777


Q ss_pred             CccEEEEecccccceeccccc--------ccccccccccccccccccceeeccccccccccCCCCCCCCCccEEeEcCcc
Q 026434          114 NLKKLRIEFCDDVEEIIGVDK--------LRDISEIIGSEHNFFAQLEYLTISWGINLKGVYPNPLPFPKLKKIKVRGCR  185 (238)
Q Consensus       114 ~L~~L~i~~C~~l~~l~~~~~--------~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~~~~~~~~L~~L~i~~C~  185 (238)
                      +|++|++.++. +..+.....        .......  ..+..+++|++|+++++ .+++++.   .+++|+.|++.+|.
T Consensus       196 ~L~~L~l~~N~-l~~l~~~~~~L~~L~l~~n~l~~l--p~~~~l~~L~~L~l~~N-~l~~l~~---~~~~L~~L~l~~N~  268 (454)
T 1jl5_A          196 FLTAIYADNNS-LKKLPDLPLSLESIVAGNNILEEL--PELQNLPFLTTIYADNN-LLKTLPD---LPPSLEALNVRDNY  268 (454)
T ss_dssp             TCCEEECCSSC-CSSCCCCCTTCCEEECCSSCCSSC--CCCTTCTTCCEEECCSS-CCSSCCS---CCTTCCEEECCSSC
T ss_pred             CCCEEECCCCc-CCcCCCCcCcccEEECcCCcCCcc--cccCCCCCCCEEECCCC-cCCcccc---cccccCEEECCCCc
Confidence            77777777663 222211000        0000011  12456677777777764 3444432   24677888777763


Q ss_pred             CCCCCCC
Q 026434          186 HLKKLPL  192 (238)
Q Consensus       186 ~L~~lp~  192 (238)
                       ++.+|.
T Consensus       269 -l~~l~~  274 (454)
T 1jl5_A          269 -LTDLPE  274 (454)
T ss_dssp             -CSCCCC
T ss_pred             -ccccCc
Confidence             455553

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=98.42  E-value=7.9e-07  Score=74.70  Aligned_cols=86  Identities=15%  Similarity=0.008  Sum_probs=48.1

Q ss_pred             cceeEEEEeecCCCCCcccch--hhcccCCeEEEeecCCceEEecccCccCcccccCCCCccEEEEecCCCCCcCc--cc
Q 026434           34 SITQSVGVYQCRSPPFNVFHL--AYMENLQELELEYCNLEEMKIDSTDEVKKLFQSGFRSLNTVHVFYCQKAKDLT--WL  109 (238)
Q Consensus        34 ~~L~~L~l~~c~~l~~~~~~l--~~l~~L~~L~i~~c~l~~i~~~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~--~~  109 (238)
                      ++|++|++.++.--......+  ..+++|++|+++++.+..+. .....   .....+++|+.|+++++ ++..++  .+
T Consensus        95 ~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~---l~~~~~~~L~~L~L~~N-~l~~~~~~~~  169 (312)
T 1wwl_A           95 SGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRD-AWLAE---LQQWLKPGLKVLSIAQA-HSLNFSCEQV  169 (312)
T ss_dssp             SCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSS-SHHHH---HHTTCCTTCCEEEEESC-SCCCCCTTTC
T ss_pred             CCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchh-HHHHH---HHHhhcCCCcEEEeeCC-CCccchHHHh
Confidence            467777777774211111122  66777888888777744331 10000   00011367778887776 455554  35


Q ss_pred             ccCCCccEEEEeccc
Q 026434          110 VFVQNLKKLRIEFCD  124 (238)
Q Consensus       110 ~~l~~L~~L~i~~C~  124 (238)
                      ..+++|++|+++++.
T Consensus       170 ~~l~~L~~L~Ls~N~  184 (312)
T 1wwl_A          170 RVFPALSTLDLSDNP  184 (312)
T ss_dssp             CCCSSCCEEECCSCT
T ss_pred             ccCCCCCEEECCCCC
Confidence            567778888777764

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.40  E-value=9.3e-07  Score=80.68  Aligned_cols=120  Identities=12%  Similarity=0.051  Sum_probs=67.1

Q ss_pred             ceeEEEEeecCCCCCcccchhhcccCCeEEEeecCCceEEecccCccCcccccCCCCccEEEEecCCCCCcCcccccCCC
Q 026434           35 ITQSVGVYQCRSPPFNVFHLAYMENLQELELEYCNLEEMKIDSTDEVKKLFQSGFRSLNTVHVFYCQKAKDLTWLVFVQN  114 (238)
Q Consensus        35 ~L~~L~l~~c~~l~~~~~~l~~l~~L~~L~i~~c~l~~i~~~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~l~~  114 (238)
                      .|+.|.+.++ .+.. ++.+.++++|+.|++++|.+..++         ...+.+++|+.|+++++ +++.++.++.+++
T Consensus       442 ~L~~L~Ls~n-~l~~-lp~~~~l~~L~~L~Ls~N~l~~lp---------~~~~~l~~L~~L~Ls~N-~l~~lp~l~~l~~  509 (567)
T 1dce_A          442 DVRVLHLAHK-DLTV-LCHLEQLLLVTHLDLSHNRLRALP---------PALAALRCLEVLQASDN-ALENVDGVANLPR  509 (567)
T ss_dssp             TCSEEECTTS-CCSS-CCCGGGGTTCCEEECCSSCCCCCC---------GGGGGCTTCCEEECCSS-CCCCCGGGTTCSS
T ss_pred             CceEEEecCC-CCCC-CcCccccccCcEeecCcccccccc---------hhhhcCCCCCEEECCCC-CCCCCcccCCCCC
Confidence            4666666665 2232 445666677777777776644442         12345667777777665 5666666666777


Q ss_pred             ccEEEEecccccceec-ccccccccccccccccccccccceeeccccccccccCCCC----CCCCCccEEe
Q 026434          115 LKKLRIEFCDDVEEII-GVDKLRDISEIIGSEHNFFAQLEYLTISWGINLKGVYPNP----LPFPKLKKIK  180 (238)
Q Consensus       115 L~~L~i~~C~~l~~l~-~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~~~----~~~~~L~~L~  180 (238)
                      |++|+++++ .+..+. +            ..+..+++|+.|++++.+ +++++...    ..+|+|+.|+
T Consensus       510 L~~L~Ls~N-~l~~~~~p------------~~l~~l~~L~~L~L~~N~-l~~~~~~~~~l~~~lp~L~~L~  566 (567)
T 1dce_A          510 LQELLLCNN-RLQQSAAI------------QPLVSCPRLVLLNLQGNS-LCQEEGIQERLAEMLPSVSSIL  566 (567)
T ss_dssp             CCEEECCSS-CCCSSSTT------------GGGGGCTTCCEEECTTSG-GGGSSSCTTHHHHHCTTCSEEE
T ss_pred             CcEEECCCC-CCCCCCCc------------HHHhcCCCCCEEEecCCc-CCCCccHHHHHHHHCcccCccC
Confidence            777777665 333331 1            344556677777776543 44443211    1255665553

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=98.38  E-value=1.3e-06  Score=80.68  Aligned_cols=95  Identities=17%  Similarity=0.069  Sum_probs=47.6

Q ss_pred             CCCCccEEEEecCCCCCcCcccccCCCccEEEEecccccceecccccccc---c--ccccccccccccccceeecccccc
Q 026434           88 GFRSLNTVHVFYCQKAKDLTWLVFVQNLKKLRIEFCDDVEEIIGVDKLRD---I--SEIIGSEHNFFAQLEYLTISWGIN  162 (238)
Q Consensus        88 ~l~~L~~L~i~~C~~L~~l~~~~~l~~L~~L~i~~C~~l~~l~~~~~~~~---~--~~~~~~~~~~~p~L~~L~L~~~~~  162 (238)
                      .+++|+.|+++++ +++.++.  .+++|+.|.+.++ .+..+........   .  ..+. .....+++|+.|+++++ +
T Consensus       179 ~~~~L~~L~Ls~N-~l~~l~~--~~~~L~~L~L~~N-~l~~l~~~~~~L~~L~Ls~N~L~-~lp~~l~~L~~L~Ls~N-~  252 (622)
T 3g06_A          179 LPSGLQELSVSDN-QLASLPT--LPSELYKLWAYNN-RLTSLPALPSGLKELIVSGNRLT-SLPVLPSELKELMVSGN-R  252 (622)
T ss_dssp             CCTTCCEEECCSS-CCSCCCC--CCTTCCEEECCSS-CCSSCCCCCTTCCEEECCSSCCS-CCCCCCTTCCEEECCSS-C
T ss_pred             cCCCCcEEECCCC-CCCCCCC--ccchhhEEECcCC-cccccCCCCCCCCEEEccCCccC-cCCCCCCcCcEEECCCC-C
Confidence            3466777777665 4555442  2355666665554 2222211000000   0  0000 00034567777777665 5


Q ss_pred             ccccCCCCCCCCCccEEeEcCccCCCCCCC
Q 026434          163 LKGVYPNPLPFPKLKKIKVRGCRHLKKLPL  192 (238)
Q Consensus       163 L~~i~~~~~~~~~L~~L~i~~C~~L~~lp~  192 (238)
                      +++++.   .+++|+.|++++| +++.+|.
T Consensus       253 L~~lp~---~~~~L~~L~Ls~N-~L~~lp~  278 (622)
T 3g06_A          253 LTSLPM---LPSGLLSLSVYRN-QLTRLPE  278 (622)
T ss_dssp             CSCCCC---CCTTCCEEECCSS-CCCSCCG
T ss_pred             CCcCCc---ccccCcEEeCCCC-CCCcCCH
Confidence            555544   4677777777777 5666664

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=98.37  E-value=1.6e-07  Score=85.27  Aligned_cols=42  Identities=17%  Similarity=0.177  Sum_probs=28.9

Q ss_pred             ccccccceeeccccccccc--cCCCCCCCCCccEEeEcCccCCCCC
Q 026434          147 NFFAQLEYLTISWGINLKG--VYPNPLPFPKLKKIKVRGCRHLKKL  190 (238)
Q Consensus       147 ~~~p~L~~L~L~~~~~L~~--i~~~~~~~~~L~~L~i~~C~~L~~l  190 (238)
                      ..+++|++|+|++|+ +..  +......+++|+.|++++|. ++..
T Consensus       485 ~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~ls~n~-it~~  528 (592)
T 3ogk_B          485 RGCPNLQKLEMRGCC-FSERAIAAAVTKLPSLRYLWVQGYR-ASMT  528 (592)
T ss_dssp             TCCTTCCEEEEESCC-CBHHHHHHHHHHCSSCCEEEEESCB-CCTT
T ss_pred             hcCcccCeeeccCCC-CcHHHHHHHHHhcCccCeeECcCCc-CCHH
Confidence            457888899888887 432  11112357899999999998 5543

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=98.32  E-value=5.7e-07  Score=69.21  Aligned_cols=115  Identities=10%  Similarity=0.073  Sum_probs=83.2

Q ss_pred             chhhcccCCeEEEeecCCceEEecccCccCcccccCCCCccEEEEecCCCCCcCcccccCCCccEEEEecccccceeccc
Q 026434           53 HLAYMENLQELELEYCNLEEMKIDSTDEVKKLFQSGFRSLNTVHVFYCQKAKDLTWLVFVQNLKKLRIEFCDDVEEIIGV  132 (238)
Q Consensus        53 ~l~~l~~L~~L~i~~c~l~~i~~~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~l~~L~~L~i~~C~~l~~l~~~  132 (238)
                      ...++.+|+.|++++|.++.+.  ..       ...+++|+.|+++++ .++.+..+..+++|++|+++++ .+..+.+ 
T Consensus        14 ~~~~~~~L~~L~l~~n~l~~i~--~~-------~~~~~~L~~L~Ls~N-~l~~~~~l~~l~~L~~L~Ls~N-~l~~~~~-   81 (176)
T 1a9n_A           14 QYTNAVRDRELDLRGYKIPVIE--NL-------GATLDQFDAIDFSDN-EIRKLDGFPLLRRLKTLLVNNN-RICRIGE-   81 (176)
T ss_dssp             EEECTTSCEEEECTTSCCCSCC--CG-------GGGTTCCSEEECCSS-CCCEECCCCCCSSCCEEECCSS-CCCEECS-
T ss_pred             hcCCcCCceEEEeeCCCCchhH--Hh-------hhcCCCCCEEECCCC-CCCcccccccCCCCCEEECCCC-cccccCc-
Confidence            3455678999999999855441  11       123459999999998 6888777888999999999987 4555421 


Q ss_pred             ccccccccccccccccccccceeeccccccccccCC--CCCCCCCccEEeEcCccCCCCCCC
Q 026434          133 DKLRDISEIIGSEHNFFAQLEYLTISWGINLKGVYP--NPLPFPKLKKIKVRGCRHLKKLPL  192 (238)
Q Consensus       133 ~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~--~~~~~~~L~~L~i~~C~~L~~lp~  192 (238)
                                 .....+++|++|++++. .+++++.  ....+++|+.|++.+++- ..+|.
T Consensus        82 -----------~~~~~l~~L~~L~L~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~i-~~~~~  130 (176)
T 1a9n_A           82 -----------GLDQALPDLTELILTNN-SLVELGDLDPLASLKSLTYLCILRNPV-TNKKH  130 (176)
T ss_dssp             -----------CHHHHCTTCCEEECCSC-CCCCGGGGGGGGGCTTCCEEECCSSGG-GGSTT
T ss_pred             -----------chhhcCCCCCEEECCCC-cCCcchhhHhhhcCCCCCEEEecCCCC-CCcHh
Confidence                       12357899999999876 3555543  345689999999999864 55664

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=98.32  E-value=3.5e-06  Score=76.61  Aligned_cols=124  Identities=17%  Similarity=0.204  Sum_probs=90.1

Q ss_pred             eecCCCCC-ccc-chhhcccCCeEEEeecCCceEEecccCccCcccccCCCCccEEEEecCCCCCcCcc--cccCCCccE
Q 026434           42 YQCRSPPF-NVF-HLAYMENLQELELEYCNLEEMKIDSTDEVKKLFQSGFRSLNTVHVFYCQKAKDLTW--LVFVQNLKK  117 (238)
Q Consensus        42 ~~c~~l~~-~~~-~l~~l~~L~~L~i~~c~l~~i~~~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~--~~~l~~L~~  117 (238)
                      .+|.+..- .+| .++  +++++|+++++.++.+..+.        ...+++|+.|++++| +++.++.  +..+++|++
T Consensus        36 ~~c~~~~l~~vP~~lp--~~~~~LdLs~N~i~~l~~~~--------f~~l~~L~~L~Ls~N-~i~~i~~~~f~~L~~L~~  104 (635)
T 4g8a_A           36 YQCMELNFYKIPDNLP--FSTKNLDLSFNPLRHLGSYS--------FFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLST  104 (635)
T ss_dssp             EECTTSCCSSCCSSSC--TTCCEEECTTSCCCEECTTT--------TTTCTTCCEEECTTC-CCCEECTTTTTTCTTCCE
T ss_pred             EECCCCCcCccCCCCC--cCCCEEEeeCCCCCCCCHHH--------HhCCCCCCEEECCCC-cCCCcChhHhcCCCCCCE
Confidence            46765332 233 233  48999999998877774322        346899999999998 6888764  578999999


Q ss_pred             EEEecccccceecccccccccccccccccccccccceeeccccccccccCCC-CCCCCCccEEeEcCccCCCCCC
Q 026434          118 LRIEFCDDVEEIIGVDKLRDISEIIGSEHNFFAQLEYLTISWGINLKGVYPN-PLPFPKLKKIKVRGCRHLKKLP  191 (238)
Q Consensus       118 L~i~~C~~l~~l~~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~~-~~~~~~L~~L~i~~C~~L~~lp  191 (238)
                      |+++++ +++.+..            ..+..+++|++|++.++ +++++... ...+++|+.|++.++. ++.++
T Consensus       105 L~Ls~N-~l~~l~~------------~~f~~L~~L~~L~Ls~N-~l~~l~~~~~~~L~~L~~L~Ls~N~-l~~~~  164 (635)
T 4g8a_A          105 LILTGN-PIQSLAL------------GAFSGLSSLQKLVAVET-NLASLENFPIGHLKTLKELNVAHNL-IQSFK  164 (635)
T ss_dssp             EECTTC-CCCEECG------------GGGTTCTTCCEEECTTS-CCCCSTTCCCTTCTTCCEEECCSSC-CCCCC
T ss_pred             EEccCC-cCCCCCH------------HHhcCCCCCCEEECCCC-cCCCCChhhhhcCcccCeeccccCc-cccCC
Confidence            999998 4666532            34567899999999987 57777653 4568999999999874 44433

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=98.32  E-value=3.7e-06  Score=76.20  Aligned_cols=156  Identities=11%  Similarity=0.090  Sum_probs=86.2

Q ss_pred             ceeEEEEeecCCCCCcccchhhcccCCeEEEeecCCceEEecccCccCcccccCCCCccEEEEecCCCCCcCc----ccc
Q 026434           35 ITQSVGVYQCRSPPFNVFHLAYMENLQELELEYCNLEEMKIDSTDEVKKLFQSGFRSLNTVHVFYCQKAKDLT----WLV  110 (238)
Q Consensus        35 ~L~~L~l~~c~~l~~~~~~l~~l~~L~~L~i~~c~l~~i~~~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~----~~~  110 (238)
                      +++.|++.++.- .. ......+++|++|++++|.+.....        .....+++|+.|+++++ +++.++    .+.
T Consensus       332 ~L~~L~l~~n~~-~~-~~~~~~l~~L~~L~l~~n~l~~~~~--------~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~  400 (562)
T 3a79_B          332 NIKMLSISDTPF-IH-MVCPPSPSSFTFLNFTQNVFTDSVF--------QGCSTLKRLQTLILQRN-GLKNFFKVALMTK  400 (562)
T ss_dssp             CCSEEEEESSCC-CC-CCCCSSCCCCCEEECCSSCCCTTTT--------TTCCSCSSCCEEECCSS-CCCBTTHHHHTTT
T ss_pred             cceEEEccCCCc-cc-ccCccCCCCceEEECCCCccccchh--------hhhcccCCCCEEECCCC-CcCCcccchhhhc
Confidence            577888877743 21 1222566777777777776332111        11234566666666665 455443    134


Q ss_pred             cCCCccEEEEecccccce-ecccc-cc-ccc-------ccccccccccc-cccceeeccccccccccCCCCCCCCCccEE
Q 026434          111 FVQNLKKLRIEFCDDVEE-IIGVD-KL-RDI-------SEIIGSEHNFF-AQLEYLTISWGINLKGVYPNPLPFPKLKKI  179 (238)
Q Consensus       111 ~l~~L~~L~i~~C~~l~~-l~~~~-~~-~~~-------~~~~~~~~~~~-p~L~~L~L~~~~~L~~i~~~~~~~~~L~~L  179 (238)
                      .+++|++|+++++. +.. +.... .. ...       ..+.......+ ++|+.|+++++ +++.++.....+++|+.|
T Consensus       401 ~l~~L~~L~l~~N~-l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~~L~~L~L~~N-~l~~ip~~~~~l~~L~~L  478 (562)
T 3a79_B          401 NMSSLETLDVSLNS-LNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNN-RIMSIPKDVTHLQALQEL  478 (562)
T ss_dssp             TCTTCCEEECTTSC-CBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCCTTCSEEECCSS-CCCCCCTTTTSSCCCSEE
T ss_pred             CCCCCCEEECCCCc-CCCccChhhhcCcccCCEEECCCCCCCcchhhhhcCcCCEEECCCC-cCcccChhhcCCCCCCEE
Confidence            56666666666553 222 21100 00 000       00000111223 68999999887 788888776789999999


Q ss_pred             eEcCccCCCCCCCCCCCCCCcceEE
Q 026434          180 KVRGCRHLKKLPLNSSSAKERRVVI  204 (238)
Q Consensus       180 ~i~~C~~L~~lp~~~~~~~~~L~~~  204 (238)
                      +++++ +++.+|...-....+|+.+
T Consensus       479 ~L~~N-~l~~l~~~~~~~l~~L~~L  502 (562)
T 3a79_B          479 NVASN-QLKSVPDGVFDRLTSLQYI  502 (562)
T ss_dssp             ECCSS-CCCCCCTTSTTTCTTCCCE
T ss_pred             ECCCC-CCCCCCHHHHhcCCCCCEE
Confidence            99997 5778887632223445444

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=98.30  E-value=1.5e-06  Score=77.17  Aligned_cols=75  Identities=11%  Similarity=-0.026  Sum_probs=42.8

Q ss_pred             cceeEEEEeecCCCCCcccchhhcccCCeEEEeecCCceEEecccCccCcccccCCCCccEEEEecCCCCCcCcccccCC
Q 026434           34 SITQSVGVYQCRSPPFNVFHLAYMENLQELELEYCNLEEMKIDSTDEVKKLFQSGFRSLNTVHVFYCQKAKDLTWLVFVQ  113 (238)
Q Consensus        34 ~~L~~L~l~~c~~l~~~~~~l~~l~~L~~L~i~~c~l~~i~~~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~l~  113 (238)
                      .+|+.|++.++. +.. ++.+.++++|+.|++++|.+..+.            ...++|+.|++++| +++.++.+..++
T Consensus       173 ~~L~~L~L~~n~-l~~-l~~~~~l~~L~~L~l~~N~l~~l~------------~~~~~L~~L~l~~n-~l~~lp~~~~l~  237 (454)
T 1jl5_A          173 PSLEFIAAGNNQ-LEE-LPELQNLPFLTAIYADNNSLKKLP------------DLPLSLESIVAGNN-ILEELPELQNLP  237 (454)
T ss_dssp             TTCCEEECCSSC-CSS-CCCCTTCTTCCEEECCSSCCSSCC------------CCCTTCCEEECCSS-CCSSCCCCTTCT
T ss_pred             ccccEEECcCCc-CCc-CccccCCCCCCEEECCCCcCCcCC------------CCcCcccEEECcCC-cCCcccccCCCC
Confidence            356666666552 222 345666677777777766633221            11246666666666 455555555666


Q ss_pred             CccEEEEecc
Q 026434          114 NLKKLRIEFC  123 (238)
Q Consensus       114 ~L~~L~i~~C  123 (238)
                      +|++|++.++
T Consensus       238 ~L~~L~l~~N  247 (454)
T 1jl5_A          238 FLTTIYADNN  247 (454)
T ss_dssp             TCCEEECCSS
T ss_pred             CCCEEECCCC
Confidence            6666666664

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=98.29  E-value=1.3e-06  Score=83.09  Aligned_cols=81  Identities=16%  Similarity=0.228  Sum_probs=43.2

Q ss_pred             cceeEEEEeecCCCCC-cccchhhcccCCeEEEeecCCceEEecccCccCcccccCCCCccEEEEecCCCCCc-Cc---c
Q 026434           34 SITQSVGVYQCRSPPF-NVFHLAYMENLQELELEYCNLEEMKIDSTDEVKKLFQSGFRSLNTVHVFYCQKAKD-LT---W  108 (238)
Q Consensus        34 ~~L~~L~l~~c~~l~~-~~~~l~~l~~L~~L~i~~c~l~~i~~~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~-l~---~  108 (238)
                      ++|+.|++.++..... ....+.++++|+.|++++|.+..+..+        ....+++|+.|++++| +++. ++   +
T Consensus        48 ~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~--------~~~~l~~L~~L~Ls~n-~l~~~~~~~~~  118 (844)
T 3j0a_A           48 EQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPD--------AFQGLFHLFELRLYFC-GLSDAVLKDGY  118 (844)
T ss_dssp             CSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTT--------SSCSCSSCCCEECTTC-CCSSCCSTTCC
T ss_pred             ccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHh--------HccCCcccCEeeCcCC-CCCcccccCcc
Confidence            5667777766643322 223456666777777776664433211        1234556666666665 3433 11   1


Q ss_pred             cccCCCccEEEEecc
Q 026434          109 LVFVQNLKKLRIEFC  123 (238)
Q Consensus       109 ~~~l~~L~~L~i~~C  123 (238)
                      +..+++|++|+++++
T Consensus       119 ~~~L~~L~~L~Ls~N  133 (844)
T 3j0a_A          119 FRNLKALTRLDLSKN  133 (844)
T ss_dssp             CSSCSSCCEEEEESC
T ss_pred             ccccCCCCEEECCCC
Confidence            455666666666655

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=98.28  E-value=2.4e-06  Score=78.98  Aligned_cols=133  Identities=15%  Similarity=0.107  Sum_probs=70.9

Q ss_pred             cceeEEEEeecCCCCC-cccchhhcccCCeEEEeecCCceEEecccCccCcccccCCCCccEEEEecCCCCCcCc--ccc
Q 026434           34 SITQSVGVYQCRSPPF-NVFHLAYMENLQELELEYCNLEEMKIDSTDEVKKLFQSGFRSLNTVHVFYCQKAKDLT--WLV  110 (238)
Q Consensus        34 ~~L~~L~l~~c~~l~~-~~~~l~~l~~L~~L~i~~c~l~~i~~~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~--~~~  110 (238)
                      ++|+.|++.++. +.. ....+.++++|+.|++++|.+..+..+        ....+++|+.|+++++ +++.++  .+.
T Consensus        49 ~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~--------~~~~l~~L~~L~L~~n-~l~~~~~~~~~  118 (680)
T 1ziw_A           49 SQLTSLDVGFNT-ISKLEPELCQKLPMLKVLNLQHNELSQLSDK--------TFAFCTNLTELHLMSN-SIQKIKNNPFV  118 (680)
T ss_dssp             TTCSEEECCSSC-CCCCCTTHHHHCTTCCEEECCSSCCCCCCTT--------TTTTCTTCSEEECCSS-CCCCCCSCTTT
T ss_pred             CcCcEEECCCCc-cCccCHHHHhcccCcCEEECCCCccCccChh--------hhccCCCCCEEECCCC-ccCccChhHcc
Confidence            345555555442 121 112345555555555555553333111        1234667777777666 455554  245


Q ss_pred             cCCCccEEEEecccccceecccccccccccccccccccccccceeeccccccccccCCC---CCCCCCccEEeEcCccCC
Q 026434          111 FVQNLKKLRIEFCDDVEEIIGVDKLRDISEIIGSEHNFFAQLEYLTISWGINLKGVYPN---PLPFPKLKKIKVRGCRHL  187 (238)
Q Consensus       111 ~l~~L~~L~i~~C~~l~~l~~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~~---~~~~~~L~~L~i~~C~~L  187 (238)
                      .+++|++|++.++. +..+..            ..+..+++|++|++.++. ++.+...   ...+++|+.|++.++ ++
T Consensus       119 ~l~~L~~L~Ls~n~-l~~~~~------------~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~~~L~~L~L~~n-~l  183 (680)
T 1ziw_A          119 KQKNLITLDLSHNG-LSSTKL------------GTQVQLENLQELLLSNNK-IQALKSEELDIFANSSLKKLELSSN-QI  183 (680)
T ss_dssp             TCTTCCEEECCSSC-CSCCCC------------CSSSCCTTCCEEECCSSC-CCCBCHHHHGGGTTCEESEEECTTC-CC
T ss_pred             ccCCCCEEECCCCc-ccccCc------------hhhcccccCCEEEccCCc-ccccCHHHhhccccccccEEECCCC-cc
Confidence            66777777776662 222211            234567788888887652 3443321   224578999999887 45


Q ss_pred             CCCC
Q 026434          188 KKLP  191 (238)
Q Consensus       188 ~~lp  191 (238)
                      +.++
T Consensus       184 ~~~~  187 (680)
T 1ziw_A          184 KEFS  187 (680)
T ss_dssp             CCBC
T ss_pred             cccC
Confidence            5544

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=98.28  E-value=3.7e-06  Score=64.52  Aligned_cols=105  Identities=17%  Similarity=0.149  Sum_probs=69.0

Q ss_pred             ccCCeEEEeecCCceEEecccCccCcccccCCCCccEEEEecCCCCCcCcc--cccCCCccEEEEecccccceecccccc
Q 026434           58 ENLQELELEYCNLEEMKIDSTDEVKKLFQSGFRSLNTVHVFYCQKAKDLTW--LVFVQNLKKLRIEFCDDVEEIIGVDKL  135 (238)
Q Consensus        58 ~~L~~L~i~~c~l~~i~~~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~--~~~l~~L~~L~i~~C~~l~~l~~~~~~  135 (238)
                      ++|+.|+++++.+..+...        ....+++|+.|+++++ +++.++.  +..+++|++|++.++ .+..+..    
T Consensus        28 ~~l~~L~l~~n~l~~~~~~--------~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~----   93 (177)
T 2o6r_A           28 SSATRLELESNKLQSLPHG--------VFDKLTQLTKLSLSQN-QIQSLPDGVFDKLTKLTILYLHEN-KLQSLPN----   93 (177)
T ss_dssp             TTCSEEECCSSCCCCCCTT--------TTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCT----
T ss_pred             CCCcEEEeCCCcccEeCHH--------HhcCcccccEEECCCC-cceEeChhHccCCCccCEEECCCC-CccccCH----
Confidence            6788888888775444211        1235778888888876 5776653  467788888888776 3443321    


Q ss_pred             cccccccccccccccccceeeccccccccccCCCC-CCCCCccEEeEcCcc
Q 026434          136 RDISEIIGSEHNFFAQLEYLTISWGINLKGVYPNP-LPFPKLKKIKVRGCR  185 (238)
Q Consensus       136 ~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~~~-~~~~~L~~L~i~~C~  185 (238)
                              .....+++|++|++.+. .++.++... ..+++|+.|++.+.+
T Consensus        94 --------~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~  135 (177)
T 2o6r_A           94 --------GVFDKLTQLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNP  135 (177)
T ss_dssp             --------TTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred             --------HHhhCCcccCEEECcCC-cceEeCHHHhcCCcccCEEEecCCC
Confidence                    23456788888888766 566666543 457888888887764

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=98.28  E-value=1.3e-05  Score=72.65  Aligned_cols=178  Identities=12%  Similarity=0.117  Sum_probs=95.6

Q ss_pred             CCCcceeEEeeehH-HHHh-hhcCchhhcceeEEEEeecCCCCCccc--chh---hcccCCeEEEeecCCceEEecccCc
Q 026434            8 KHLKVLSWSFGSSL-AVQK-FLKYPKLVSITQSVGVYQCRSPPFNVF--HLA---YMENLQELELEYCNLEEMKIDSTDE   80 (238)
Q Consensus         8 ~~L~~L~i~~~~~~-~l~~-l~~~~~l~~~L~~L~l~~c~~l~~~~~--~l~---~l~~L~~L~i~~c~l~~i~~~~~~~   80 (238)
                      .+|+.|++...... .+.. ++...  ..+++.|.+.+...-...++  .+.   ...+|+.|++++|.+..+.      
T Consensus       276 ~~L~~L~l~~n~l~~~ip~~~~~~~--~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~------  347 (562)
T 3a79_B          276 RPVEYLNIYNLTITERIDREEFTYS--ETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMV------  347 (562)
T ss_dssp             SSEEEEEEEEEEECSCCCCCCCCCC--SCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCC------
T ss_pred             ccccEEEEeccEeeccccchhhhcc--cccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCccccc------
Confidence            47888888654322 1111 11110  13555555555432111112  121   2257999999999843221      


Q ss_pred             cCcccccCCCCccEEEEecCCCCCc-C-cccccCCCccEEEEecccccceeccccc------c--------ccccc-ccc
Q 026434           81 VKKLFQSGFRSLNTVHVFYCQKAKD-L-TWLVFVQNLKKLRIEFCDDVEEIIGVDK------L--------RDISE-IIG  143 (238)
Q Consensus        81 ~~~~~~~~l~~L~~L~i~~C~~L~~-l-~~~~~l~~L~~L~i~~C~~l~~l~~~~~------~--------~~~~~-~~~  143 (238)
                          ....+++|+.|+++++ +++. + ..+..+++|++|++.++ ++..+.....      .        ....+ .+.
T Consensus       348 ----~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~  421 (562)
T 3a79_B          348 ----CPPSPSSFTFLNFTQN-VFTDSVFQGCSTLKRLQTLILQRN-GLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYD  421 (562)
T ss_dssp             ----CCSSCCCCCEEECCSS-CCCTTTTTTCCSCSSCCEEECCSS-CCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSS
T ss_pred             ----CccCCCCceEEECCCC-ccccchhhhhcccCCCCEEECCCC-CcCCcccchhhhcCCCCCCEEECCCCcCCCccCh
Confidence                1145889999999988 5665 2 24678999999999987 4443311000      0        00000 111


Q ss_pred             cccccccccceeeccccccccccCCCCCCC-CCccEEeEcCccCCCCCCCCCCCCCCcceEE
Q 026434          144 SEHNFFAQLEYLTISWGINLKGVYPNPLPF-PKLKKIKVRGCRHLKKLPLNSSSAKERRVVI  204 (238)
Q Consensus       144 ~~~~~~p~L~~L~L~~~~~L~~i~~~~~~~-~~L~~L~i~~C~~L~~lp~~~~~~~~~L~~~  204 (238)
                      .....+++|+.|+++++. +++..  ...+ ++|+.|+++++ +++.+|.... ...+|+.+
T Consensus       422 ~~~~~l~~L~~L~l~~n~-l~~~~--~~~l~~~L~~L~L~~N-~l~~ip~~~~-~l~~L~~L  478 (562)
T 3a79_B          422 RTCAWAESILVLNLSSNM-LTGSV--FRCLPPKVKVLDLHNN-RIMSIPKDVT-HLQALQEL  478 (562)
T ss_dssp             CCCCCCTTCCEEECCSSC-CCGGG--GSSCCTTCSEEECCSS-CCCCCCTTTT-SSCCCSEE
T ss_pred             hhhcCcccCCEEECCCCC-CCcch--hhhhcCcCCEEECCCC-cCcccChhhc-CCCCCCEE
Confidence            123345666666666543 22111  1123 68999999888 7888886554 23455554

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=98.28  E-value=9.1e-07  Score=81.61  Aligned_cols=76  Identities=14%  Similarity=0.135  Sum_probs=48.2

Q ss_pred             CCccEEEEecCCCCCcCcccccCCCccEEEEecccccceecccccccccccccccccccccccceeeccccccccccCCC
Q 026434           90 RSLNTVHVFYCQKAKDLTWLVFVQNLKKLRIEFCDDVEEIIGVDKLRDISEIIGSEHNFFAQLEYLTISWGINLKGVYPN  169 (238)
Q Consensus        90 ~~L~~L~i~~C~~L~~l~~~~~l~~L~~L~i~~C~~l~~l~~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~~  169 (238)
                      ++|+.|+++++ +++.++  ..+++|++|+++++ ++..+.              .  .+++|+.|++.++ +++.++..
T Consensus       221 ~~L~~L~Ls~N-~L~~lp--~~l~~L~~L~Ls~N-~L~~lp--------------~--~~~~L~~L~Ls~N-~L~~lp~~  279 (622)
T 3g06_A          221 SGLKELIVSGN-RLTSLP--VLPSELKELMVSGN-RLTSLP--------------M--LPSGLLSLSVYRN-QLTRLPES  279 (622)
T ss_dssp             TTCCEEECCSS-CCSCCC--CCCTTCCEEECCSS-CCSCCC--------------C--CCTTCCEEECCSS-CCCSCCGG
T ss_pred             CCCCEEEccCC-ccCcCC--CCCCcCcEEECCCC-CCCcCC--------------c--ccccCcEEeCCCC-CCCcCCHH
Confidence            44555555544 344443  33455555555554 333221              1  5688999999887 67777766


Q ss_pred             CCCCCCccEEeEcCccC
Q 026434          170 PLPFPKLKKIKVRGCRH  186 (238)
Q Consensus       170 ~~~~~~L~~L~i~~C~~  186 (238)
                      ...+++|+.|++.+++-
T Consensus       280 l~~l~~L~~L~L~~N~l  296 (622)
T 3g06_A          280 LIHLSSETTVNLEGNPL  296 (622)
T ss_dssp             GGGSCTTCEEECCSCCC
T ss_pred             HhhccccCEEEecCCCC
Confidence            66789999999998863

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=98.27  E-value=2.8e-07  Score=83.63  Aligned_cols=39  Identities=13%  Similarity=0.034  Sum_probs=26.5

Q ss_pred             ccccccceeeccccccccccCC--CCCCCCCccEEeEcCccC
Q 026434          147 NFFAQLEYLTISWGINLKGVYP--NPLPFPKLKKIKVRGCRH  186 (238)
Q Consensus       147 ~~~p~L~~L~L~~~~~L~~i~~--~~~~~~~L~~L~i~~C~~  186 (238)
                      ..+++|+.|+|.+|+- .....  ....+++|+.|++++|+.
T Consensus       478 ~~~~~L~~L~L~~n~~-~~~~~~~~~~~l~~L~~L~l~~~~~  518 (594)
T 2p1m_B          478 SGCDSLRKLEIRDCPF-GDKALLANASKLETMRSLWMSSCSV  518 (594)
T ss_dssp             HHCTTCCEEEEESCSC-CHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred             hcCCCcCEEECcCCCC-cHHHHHHHHHhCCCCCEEeeeCCCC
Confidence            4478888888888864 22111  223478899999999975

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=98.26  E-value=9.8e-08  Score=86.69  Aligned_cols=86  Identities=17%  Similarity=0.230  Sum_probs=41.8

Q ss_pred             cceeEEEEeecCCCCC-cccch-hhcccCCeEEEeecCCceEEecccCccCcccccCCCCccEEEEecCC-CCCc--Ccc
Q 026434           34 SITQSVGVYQCRSPPF-NVFHL-AYMENLQELELEYCNLEEMKIDSTDEVKKLFQSGFRSLNTVHVFYCQ-KAKD--LTW  108 (238)
Q Consensus        34 ~~L~~L~l~~c~~l~~-~~~~l-~~l~~L~~L~i~~c~l~~i~~~~~~~~~~~~~~~l~~L~~L~i~~C~-~L~~--l~~  108 (238)
                      ++|++|++.+|..+.. .+..+ .++++|++|++++|.+........    ......+++|+.|++++|. .+..  +..
T Consensus       130 ~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l----~~~~~~~~~L~~L~l~~~~~~~~~~~l~~  205 (594)
T 2p1m_B          130 KNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWL----SHFPDTYTSLVSLNISCLASEVSFSALER  205 (594)
T ss_dssp             TTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGG----GGSCTTCCCCCEEECTTCCSCCCHHHHHH
T ss_pred             CCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHH----HHHhhcCCcCcEEEecccCCcCCHHHHHH
Confidence            3566666666643322 12222 355666666666655221111100    0112246677777777775 1211  111


Q ss_pred             -cccCCCccEEEEecc
Q 026434          109 -LVFVQNLKKLRIEFC  123 (238)
Q Consensus       109 -~~~l~~L~~L~i~~C  123 (238)
                       ...+++|++|.+.+|
T Consensus       206 l~~~~~~L~~L~L~~~  221 (594)
T 2p1m_B          206 LVTRCPNLKSLKLNRA  221 (594)
T ss_dssp             HHHHCTTCCEEECCTT
T ss_pred             HHHhCCCCcEEecCCC
Confidence             234677777777776

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=98.26  E-value=7.1e-06  Score=69.29  Aligned_cols=79  Identities=14%  Similarity=0.053  Sum_probs=43.4

Q ss_pred             cceeEEEEeecCCCCC-cccchhhcccCCeEEEeecCCceEEecccCccCcccccCCCCccEEEEecCCCCCcCcccccC
Q 026434           34 SITQSVGVYQCRSPPF-NVFHLAYMENLQELELEYCNLEEMKIDSTDEVKKLFQSGFRSLNTVHVFYCQKAKDLTWLVFV  112 (238)
Q Consensus        34 ~~L~~L~l~~c~~l~~-~~~~l~~l~~L~~L~i~~c~l~~i~~~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~l  112 (238)
                      ++++.|++.++. +.. ....+.++++|++|++++|.+..+..+.        ...+++|+.|+++++ +++.++.. ..
T Consensus        54 ~~l~~L~l~~n~-i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~--------~~~l~~L~~L~L~~n-~l~~l~~~-~~  122 (332)
T 2ft3_A           54 PDTTLLDLQNND-ISELRKDDFKGLQHLYALVLVNNKISKIHEKA--------FSPLRKLQKLYISKN-HLVEIPPN-LP  122 (332)
T ss_dssp             TTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCCEECGGG--------STTCTTCCEEECCSS-CCCSCCSS-CC
T ss_pred             CCCeEEECCCCc-CCccCHhHhhCCCCCcEEECCCCccCccCHhH--------hhCcCCCCEEECCCC-cCCccCcc-cc
Confidence            467777777653 222 2234667777777777777654442211        234566666666655 45544421 12


Q ss_pred             CCccEEEEecc
Q 026434          113 QNLKKLRIEFC  123 (238)
Q Consensus       113 ~~L~~L~i~~C  123 (238)
                      ++|++|++.++
T Consensus       123 ~~L~~L~l~~n  133 (332)
T 2ft3_A          123 SSLVELRIHDN  133 (332)
T ss_dssp             TTCCEEECCSS
T ss_pred             ccCCEEECCCC
Confidence            56666666554

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=98.25  E-value=1.1e-05  Score=64.31  Aligned_cols=123  Identities=13%  Similarity=0.132  Sum_probs=86.6

Q ss_pred             ccCCeEEEeecCCceEEecccCccCcccccCCCCccEEEEecCCCCCcCc--ccccCCCccEEEEecccccceecccccc
Q 026434           58 ENLQELELEYCNLEEMKIDSTDEVKKLFQSGFRSLNTVHVFYCQKAKDLT--WLVFVQNLKKLRIEFCDDVEEIIGVDKL  135 (238)
Q Consensus        58 ~~L~~L~i~~c~l~~i~~~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~--~~~~l~~L~~L~i~~C~~l~~l~~~~~~  135 (238)
                      ++|+.|+++++.++.+...        ....+++|+.|+++++ +++.+.  .+..+++|++|+++++ .+..+..    
T Consensus        32 ~~l~~L~l~~n~i~~i~~~--------~~~~l~~L~~L~Ls~N-~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~----   97 (220)
T 2v9t_B           32 ETITEIRLEQNTIKVIPPG--------AFSPYKKLRRIDLSNN-QISELAPDAFQGLRSLNSLVLYGN-KITELPK----   97 (220)
T ss_dssp             TTCCEEECCSSCCCEECTT--------SSTTCTTCCEEECCSS-CCCEECTTTTTTCSSCCEEECCSS-CCCCCCT----
T ss_pred             cCCCEEECCCCcCCCcCHh--------HhhCCCCCCEEECCCC-cCCCcCHHHhhCCcCCCEEECCCC-cCCccCH----
Confidence            6899999999987666322        2346889999999987 577763  4678899999999886 4554421    


Q ss_pred             cccccccccccccccccceeeccccccccccCC-CCCCCCCccEEeEcCccCCCCCCCCCCCCCCcceEE
Q 026434          136 RDISEIIGSEHNFFAQLEYLTISWGINLKGVYP-NPLPFPKLKKIKVRGCRHLKKLPLNSSSAKERRVVI  204 (238)
Q Consensus       136 ~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~-~~~~~~~L~~L~i~~C~~L~~lp~~~~~~~~~L~~~  204 (238)
                              .....+++|+.|+|.+. .++.+.. ....+++|+.|+++++. ++.+|...-....+|+.+
T Consensus        98 --------~~f~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L  157 (220)
T 2v9t_B           98 --------SLFEGLFSLQLLLLNAN-KINCLRVDAFQDLHNLNLLSLYDNK-LQTIAKGTFSPLRAIQTM  157 (220)
T ss_dssp             --------TTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEE
T ss_pred             --------hHccCCCCCCEEECCCC-CCCEeCHHHcCCCCCCCEEECCCCc-CCEECHHHHhCCCCCCEE
Confidence                    23457899999999876 4666644 34568999999999874 666765433323344433

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=98.24  E-value=1.9e-06  Score=72.31  Aligned_cols=154  Identities=13%  Similarity=0.034  Sum_probs=82.5

Q ss_pred             cceeEEEEeecCCCCCcccch--hhcccCCeEEEeecCCceEEecccCccCcccccCCCCccEEEEecCCCCCcCc--cc
Q 026434           34 SITQSVGVYQCRSPPFNVFHL--AYMENLQELELEYCNLEEMKIDSTDEVKKLFQSGFRSLNTVHVFYCQKAKDLT--WL  109 (238)
Q Consensus        34 ~~L~~L~l~~c~~l~~~~~~l--~~l~~L~~L~i~~c~l~~i~~~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~--~~  109 (238)
                      .+|+.|.+.++.-.......+  .++++|+.|++++|.+........    ......+++|+.|+++++ ++..++  .+
T Consensus        91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~----~~~~~~~~~L~~L~Ls~n-~l~~~~~~~~  165 (310)
T 4glp_A           91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLA----ELQQWLKPGLKVLSIAQA-HSPAFSCEQV  165 (310)
T ss_dssp             SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHH----HHHTTBCSCCCEEEEECC-SSCCCCTTSC
T ss_pred             CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhH----HHHhhhccCCCEEEeeCC-CcchhhHHHh
Confidence            468999998885322112233  678899999999887332100000    001124677888888776 455544  24


Q ss_pred             ccCCCccEEEEecccccce--ecccc-----c---c-----cccccccc--c-ccccccccceeecccccccccc-CCCC
Q 026434          110 VFVQNLKKLRIEFCDDVEE--IIGVD-----K---L-----RDISEIIG--S-EHNFFAQLEYLTISWGINLKGV-YPNP  170 (238)
Q Consensus       110 ~~l~~L~~L~i~~C~~l~~--l~~~~-----~---~-----~~~~~~~~--~-~~~~~p~L~~L~L~~~~~L~~i-~~~~  170 (238)
                      ..+++|++|+++++.-...  +....     .   .     ........  . ....+++|++|++++.. ++++ +...
T Consensus       166 ~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~-l~~~~p~~~  244 (310)
T 4glp_A          166 RAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNS-LRATVNPSA  244 (310)
T ss_dssp             CCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSC-CCCCCCSCC
T ss_pred             ccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCC-CCccchhhH
Confidence            5677788887777642210  10000     0   0     00000000  0 12345778888887653 4443 2222


Q ss_pred             CCC---CCccEEeEcCccCCCCCCCCC
Q 026434          171 LPF---PKLKKIKVRGCRHLKKLPLNS  194 (238)
Q Consensus       171 ~~~---~~L~~L~i~~C~~L~~lp~~~  194 (238)
                      ..+   ++|+.|+++++ +++.+|...
T Consensus       245 ~~~~~~~~L~~L~Ls~N-~l~~lp~~~  270 (310)
T 4glp_A          245 PRCMWSSALNSLNLSFA-GLEQVPKGL  270 (310)
T ss_dssp             SSCCCCTTCCCEECCSS-CCCSCCSCC
T ss_pred             HhccCcCcCCEEECCCC-CCCchhhhh
Confidence            333   78999999887 466777654

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=98.17  E-value=3.3e-07  Score=83.21  Aligned_cols=39  Identities=8%  Similarity=-0.110  Sum_probs=24.2

Q ss_pred             ccccccceeecccccc-ccccCC--CCCCCCCccEEeEcCcc
Q 026434          147 NFFAQLEYLTISWGIN-LKGVYP--NPLPFPKLKKIKVRGCR  185 (238)
Q Consensus       147 ~~~p~L~~L~L~~~~~-L~~i~~--~~~~~~~L~~L~i~~C~  185 (238)
                      ..+++|++|.+..|.+ +..-..  -...+++|+.|++.+|.
T Consensus       433 ~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~  474 (592)
T 3ogk_B          433 IGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVG  474 (592)
T ss_dssp             HHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCC
T ss_pred             HhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCC
Confidence            4578888888876654 221110  12247889999998875

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=98.17  E-value=6e-06  Score=63.31  Aligned_cols=106  Identities=10%  Similarity=0.066  Sum_probs=76.8

Q ss_pred             hcceeEEEEeecCCCCC-cccchhhcccCCeEEEeecCCceEEecccCccCcccccCCCCccEEEEecCCCCCcCcc--c
Q 026434           33 VSITQSVGVYQCRSPPF-NVFHLAYMENLQELELEYCNLEEMKIDSTDEVKKLFQSGFRSLNTVHVFYCQKAKDLTW--L  109 (238)
Q Consensus        33 ~~~L~~L~l~~c~~l~~-~~~~l~~l~~L~~L~i~~c~l~~i~~~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~--~  109 (238)
                      .++++.|.+.++. +.. ....+..+++|+.|+++++.+..+....        ...+++|+.|+++++ +++.++.  +
T Consensus        27 ~~~l~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~--------~~~l~~L~~L~l~~N-~l~~~~~~~~   96 (177)
T 2o6r_A           27 PSSATRLELESNK-LQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGV--------FDKLTKLTILYLHEN-KLQSLPNGVF   96 (177)
T ss_dssp             CTTCSEEECCSSC-CCCCCTTTTTTCTTCSEEECCSSCCCCCCTTT--------TTTCTTCCEEECCSS-CCCCCCTTTT
T ss_pred             CCCCcEEEeCCCc-ccEeCHHHhcCcccccEEECCCCcceEeChhH--------ccCCCccCEEECCCC-CccccCHHHh
Confidence            3689999998864 333 2234678899999999999865553221        246889999999987 6877764  5


Q ss_pred             ccCCCccEEEEecccccceecccccccccccccccccccccccceeeccccc
Q 026434          110 VFVQNLKKLRIEFCDDVEEIIGVDKLRDISEIIGSEHNFFAQLEYLTISWGI  161 (238)
Q Consensus       110 ~~l~~L~~L~i~~C~~l~~l~~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~  161 (238)
                      ..+++|++|++.++ .+..+..            .....+++|++|++.+.+
T Consensus        97 ~~l~~L~~L~l~~N-~l~~~~~------------~~~~~l~~L~~L~l~~N~  135 (177)
T 2o6r_A           97 DKLTQLKELALDTN-QLKSVPD------------GIFDRLTSLQKIWLHTNP  135 (177)
T ss_dssp             TTCTTCCEEECCSS-CCSCCCT------------TTTTTCTTCCEEECCSSC
T ss_pred             hCCcccCEEECcCC-cceEeCH------------HHhcCCcccCEEEecCCC
Confidence            67899999999987 5554421            233568899999997653

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=98.17  E-value=2.1e-06  Score=80.61  Aligned_cols=109  Identities=13%  Similarity=0.021  Sum_probs=76.5

Q ss_pred             chhhcccCCeEEEeecCCceEEecccCccCcccccCCCCccEEEEecCCCCCcCc-ccccCCCccEEEEecccccceecc
Q 026434           53 HLAYMENLQELELEYCNLEEMKIDSTDEVKKLFQSGFRSLNTVHVFYCQKAKDLT-WLVFVQNLKKLRIEFCDDVEEIIG  131 (238)
Q Consensus        53 ~l~~l~~L~~L~i~~c~l~~i~~~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~-~~~~l~~L~~L~i~~C~~l~~l~~  131 (238)
                      .+..+++|+.|+++++.+..+..         ....+++|+.|+++++ +++.++ .+..+++|++|+++++. +..++ 
T Consensus       219 ~~~~l~~L~~L~Ls~n~l~~l~~---------~~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp-  286 (727)
T 4b8c_D          219 SKYDDQLWHALDLSNLQIFNISA---------NIFKYDFLTRLYLNGN-SLTELPAEIKNLSNLRVLDLSHNR-LTSLP-  286 (727)
T ss_dssp             ---CCCCCCEEECTTSCCSCCCG---------GGGGCCSCSCCBCTTS-CCSCCCGGGGGGTTCCEEECTTSC-CSSCC-
T ss_pred             hhccCCCCcEEECCCCCCCCCCh---------hhcCCCCCCEEEeeCC-cCcccChhhhCCCCCCEEeCcCCc-CCccC-
Confidence            35667788888888887444421         2235788888888877 577766 36778888888888774 44442 


Q ss_pred             cccccccccccccccccccccceeeccccccccccCCCCCCCCCccEEeEcCccC
Q 026434          132 VDKLRDISEIIGSEHNFFAQLEYLTISWGINLKGVYPNPLPFPKLKKIKVRGCRH  186 (238)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~~~~~~~~L~~L~i~~C~~  186 (238)
                                  ..+..+++|++|+|.++ .++.++.....+++|+.|++++++-
T Consensus       287 ------------~~~~~l~~L~~L~L~~N-~l~~lp~~~~~l~~L~~L~L~~N~l  328 (727)
T 4b8c_D          287 ------------AELGSCFQLKYFYFFDN-MVTTLPWEFGNLCNLQFLGVEGNPL  328 (727)
T ss_dssp             ------------SSGGGGTTCSEEECCSS-CCCCCCSSTTSCTTCCCEECTTSCC
T ss_pred             ------------hhhcCCCCCCEEECCCC-CCCccChhhhcCCCccEEeCCCCcc
Confidence                        34567788888888876 5777776666788888888887753

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=98.16  E-value=2.2e-05  Score=62.53  Aligned_cols=124  Identities=8%  Similarity=0.088  Sum_probs=85.7

Q ss_pred             ccCCeEEEeecCCceEEecccCccCcccccCCCCccEEEEecCCCCCcCcc--cccCCCccEEEEecccccceecccccc
Q 026434           58 ENLQELELEYCNLEEMKIDSTDEVKKLFQSGFRSLNTVHVFYCQKAKDLTW--LVFVQNLKKLRIEFCDDVEEIIGVDKL  135 (238)
Q Consensus        58 ~~L~~L~i~~c~l~~i~~~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~--~~~l~~L~~L~i~~C~~l~~l~~~~~~  135 (238)
                      +.++.|+++++.+..+....       ....+++|+.|+++++ +++.++.  +..+++|++|+++++ .+..+..    
T Consensus        32 ~~~~~L~L~~N~l~~~~~~~-------~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls~N-~l~~~~~----   98 (220)
T 2v70_A           32 QYTAELRLNNNEFTVLEATG-------IFKKLPQLRKINFSNN-KITDIEEGAFEGASGVNEILLTSN-RLENVQH----   98 (220)
T ss_dssp             TTCSEEECCSSCCCEECCCC-------CGGGCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSS-CCCCCCG----
T ss_pred             CCCCEEEcCCCcCCccCchh-------hhccCCCCCEEECCCC-cCCEECHHHhCCCCCCCEEECCCC-ccCccCH----
Confidence            46789999998866552211       1246899999999987 5777653  678999999999987 4444421    


Q ss_pred             cccccccccccccccccceeeccccccccccCC-CCCCCCCccEEeEcCccCCCCCCCCCCCCCCcceEE
Q 026434          136 RDISEIIGSEHNFFAQLEYLTISWGINLKGVYP-NPLPFPKLKKIKVRGCRHLKKLPLNSSSAKERRVVI  204 (238)
Q Consensus       136 ~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~-~~~~~~~L~~L~i~~C~~L~~lp~~~~~~~~~L~~~  204 (238)
                              ..+..+++|++|++++. .++++.. ....+++|+.|+++++ +++.++...-....+|+.+
T Consensus        99 --------~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L  158 (220)
T 2v70_A           99 --------KMFKGLESLKTLMLRSN-RITCVGNDSFIGLSSVRLLSLYDN-QITTVAPGAFDTLHSLSTL  158 (220)
T ss_dssp             --------GGGTTCSSCCEEECTTS-CCCCBCTTSSTTCTTCSEEECTTS-CCCCBCTTTTTTCTTCCEE
T ss_pred             --------hHhcCCcCCCEEECCCC-cCCeECHhHcCCCccCCEEECCCC-cCCEECHHHhcCCCCCCEE
Confidence                    34567899999999876 4666643 3456899999999987 5666643332223445444

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=98.12  E-value=4.1e-05  Score=72.82  Aligned_cols=131  Identities=17%  Similarity=0.153  Sum_probs=94.8

Q ss_pred             hhcceeEEEEeecCCCCC-cccchhhcccCCeEEEeecC-CceEEecccCccCcccccCCCCccEEEEecCCCCCcC-c-
Q 026434           32 LVSITQSVGVYQCRSPPF-NVFHLAYMENLQELELEYCN-LEEMKIDSTDEVKKLFQSGFRSLNTVHVFYCQKAKDL-T-  107 (238)
Q Consensus        32 l~~~L~~L~l~~c~~l~~-~~~~l~~l~~L~~L~i~~c~-l~~i~~~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l-~-  107 (238)
                      +.++++.|+++++. +.. ....+.++++|+.|++++|. ...+..+        ....+++|+.|+++++ +++.+ + 
T Consensus        22 lp~~l~~LdLs~N~-i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~--------~f~~L~~L~~L~Ls~N-~l~~~~p~   91 (844)
T 3j0a_A           22 VLNTTERLLLSFNY-IRTVTASSFPFLEQLQLLELGSQYTPLTIDKE--------AFRNLPNLRILDLGSS-KIYFLHPD   91 (844)
T ss_dssp             SCTTCCEEEEESCC-CCEECSSSCSSCCSCSEEEECTTCCCCEECTT--------TTSSCTTCCEEECTTC-CCCEECTT
T ss_pred             CCCCcCEEECCCCc-CCccChhHCcccccCeEEeCCCCCCccccCHH--------HhcCCCCCCEEECCCC-cCcccCHh
Confidence            55789999999874 333 34567889999999999997 6655322        2356899999999988 56665 2 


Q ss_pred             ccccCCCccEEEEecccccce-ecccccccccccccccccccccccceeeccccccccccCC--CCCCCCCccEEeEcCc
Q 026434          108 WLVFVQNLKKLRIEFCDDVEE-IIGVDKLRDISEIIGSEHNFFAQLEYLTISWGINLKGVYP--NPLPFPKLKKIKVRGC  184 (238)
Q Consensus       108 ~~~~l~~L~~L~i~~C~~l~~-l~~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~--~~~~~~~L~~L~i~~C  184 (238)
                      .+..+++|++|++.+|. +.. ++..           ..+..+++|++|+++++. ++++..  ....+++|+.|++.++
T Consensus        92 ~~~~l~~L~~L~Ls~n~-l~~~~~~~-----------~~~~~L~~L~~L~Ls~N~-l~~~~~~~~~~~L~~L~~L~Ls~N  158 (844)
T 3j0a_A           92 AFQGLFHLFELRLYFCG-LSDAVLKD-----------GYFRNLKALTRLDLSKNQ-IRSLYLHPSFGKLNSLKSIDFSSN  158 (844)
T ss_dssp             SSCSCSSCCCEECTTCC-CSSCCSTT-----------CCCSSCSSCCEEEEESCC-CCCCCCCGGGGTCSSCCEEEEESS
T ss_pred             HccCCcccCEeeCcCCC-CCcccccC-----------ccccccCCCCEEECCCCc-ccccccchhHhhCCCCCEEECCCC
Confidence            46789999999999884 332 2110           235678999999998764 444332  2456899999999987


Q ss_pred             c
Q 026434          185 R  185 (238)
Q Consensus       185 ~  185 (238)
                      .
T Consensus       159 ~  159 (844)
T 3j0a_A          159 Q  159 (844)
T ss_dssp             C
T ss_pred             c
Confidence            4

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=98.08  E-value=9.7e-06  Score=74.01  Aligned_cols=56  Identities=11%  Similarity=-0.043  Sum_probs=30.7

Q ss_pred             CCcceeEEeeehHHHHhhhcCchhhcceeEEEEeecCCCCCcccchhhcccCCeEEEeecCCceE
Q 026434            9 HLKVLSWSFGSSLAVQKFLKYPKLVSITQSVGVYQCRSPPFNVFHLAYMENLQELELEYCNLEEM   73 (238)
Q Consensus         9 ~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~c~~l~~~~~~l~~l~~L~~L~i~~c~l~~i   73 (238)
                      +|+.|+++.....   .+...  +.++|+.|++.++. +.. ++  ..+++|+.|++++|.+..+
T Consensus        60 ~L~~L~Ls~n~L~---~lp~~--l~~~L~~L~Ls~N~-l~~-ip--~~l~~L~~L~Ls~N~l~~i  115 (571)
T 3cvr_A           60 QFSELQLNRLNLS---SLPDN--LPPQITVLEITQNA-LIS-LP--ELPASLEYLDACDNRLSTL  115 (571)
T ss_dssp             TCSEEECCSSCCS---CCCSC--CCTTCSEEECCSSC-CSC-CC--CCCTTCCEEECCSSCCSCC
T ss_pred             CccEEEeCCCCCC---ccCHh--HcCCCCEEECcCCC-Ccc-cc--cccCCCCEEEccCCCCCCc
Confidence            6667766432221   22221  23578888887763 232 33  4457778888777764433

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=98.07  E-value=1.1e-06  Score=75.93  Aligned_cols=13  Identities=8%  Similarity=0.059  Sum_probs=8.8

Q ss_pred             CCCccEEeEcCcc
Q 026434          173 FPKLKKIKVRGCR  185 (238)
Q Consensus       173 ~~~L~~L~i~~C~  185 (238)
                      +++|+.|++++|.
T Consensus       273 ~~~L~~L~L~~n~  285 (386)
T 2ca6_A          273 NIGLQTLRLQYNE  285 (386)
T ss_dssp             SCCCCEEECCSSC
T ss_pred             CCCeEEEECcCCc
Confidence            5667777777664

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=98.04  E-value=1.4e-06  Score=75.25  Aligned_cols=37  Identities=16%  Similarity=0.205  Sum_probs=21.5

Q ss_pred             ccccceeeccccccccc-----cCCCC-CCCCCccEEeEcCccC
Q 026434          149 FAQLEYLTISWGINLKG-----VYPNP-LPFPKLKKIKVRGCRH  186 (238)
Q Consensus       149 ~p~L~~L~L~~~~~L~~-----i~~~~-~~~~~L~~L~i~~C~~  186 (238)
                      +++|++|+|.++. +..     ++... ..+++|+.|++.+|+-
T Consensus       273 ~~~L~~L~L~~n~-i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l  315 (386)
T 2ca6_A          273 NIGLQTLRLQYNE-IELDAVRTLKTVIDEKMPDLLFLELNGNRF  315 (386)
T ss_dssp             SCCCCEEECCSSC-CBHHHHHHHHHHHHHHCTTCCEEECTTSBS
T ss_pred             CCCeEEEECcCCc-CCHHHHHHHHHHHHhcCCCceEEEccCCcC
Confidence            5666666666543 222     32222 2368888888888753

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=98.02  E-value=2.6e-05  Score=60.87  Aligned_cols=102  Identities=13%  Similarity=0.140  Sum_probs=47.3

Q ss_pred             ccCCeEEEeecCCceEEecccCccCcccccCCCCccEEEEecCCCCCcCcc--cccCCCccEEEEecccccceecccccc
Q 026434           58 ENLQELELEYCNLEEMKIDSTDEVKKLFQSGFRSLNTVHVFYCQKAKDLTW--LVFVQNLKKLRIEFCDDVEEIIGVDKL  135 (238)
Q Consensus        58 ~~L~~L~i~~c~l~~i~~~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~--~~~l~~L~~L~i~~C~~l~~l~~~~~~  135 (238)
                      ++|+.|+++++.++.+.         .....+++|+.|+++++ +++.++.  +..+++|++|+++++ .+..+.+    
T Consensus        31 ~~l~~L~L~~n~i~~ip---------~~~~~l~~L~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls~N-~l~~i~~----   95 (193)
T 2wfh_A           31 RDVTELYLDGNQFTLVP---------KELSNYKHLTLIDLSNN-RISTLSNQSFSNMTQLLTLILSYN-RLRCIPP----   95 (193)
T ss_dssp             TTCCEEECCSSCCCSCC---------GGGGGCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCBCCT----
T ss_pred             CCCCEEECCCCcCchhH---------HHhhcccCCCEEECCCC-cCCEeCHhHccCCCCCCEEECCCC-ccCEeCH----
Confidence            35555655555533332         11234555666666554 3444432  345556666665554 2333211    


Q ss_pred             cccccccccccccccccceeeccccccccccCCC-CCCCCCccEEeEcC
Q 026434          136 RDISEIIGSEHNFFAQLEYLTISWGINLKGVYPN-PLPFPKLKKIKVRG  183 (238)
Q Consensus       136 ~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~~-~~~~~~L~~L~i~~  183 (238)
                              ..+..+++|+.|+|.+. .++.++.. ...+++|+.|++.+
T Consensus        96 --------~~f~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~  135 (193)
T 2wfh_A           96 --------RTFDGLKSLRLLSLHGN-DISVVPEGAFNDLSALSHLAIGA  135 (193)
T ss_dssp             --------TTTTTCTTCCEEECCSS-CCCBCCTTTTTTCTTCCEEECCS
T ss_pred             --------HHhCCCCCCCEEECCCC-CCCeeChhhhhcCccccEEEeCC
Confidence                    22334555666665543 34444432 22345555555443

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=98.02  E-value=1.8e-05  Score=61.68  Aligned_cols=34  Identities=15%  Similarity=0.125  Sum_probs=15.3

Q ss_pred             CCCccEEEEecCCCCCcCcc--cccCCCccEEEEecc
Q 026434           89 FRSLNTVHVFYCQKAKDLTW--LVFVQNLKKLRIEFC  123 (238)
Q Consensus        89 l~~L~~L~i~~C~~L~~l~~--~~~l~~L~~L~i~~C  123 (238)
                      +++|+.|++++. +++.++.  +..+++|++|+++++
T Consensus        77 l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N  112 (192)
T 1w8a_A           77 ASHIQELQLGEN-KIKEISNKMFLGLHQLKTLNLYDN  112 (192)
T ss_dssp             CTTCCEEECCSC-CCCEECSSSSTTCTTCCEEECCSS
T ss_pred             cccCCEEECCCC-cCCccCHHHhcCCCCCCEEECCCC
Confidence            445555555444 3444332  334455555555443

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=98.01  E-value=2e-05  Score=61.52  Aligned_cols=105  Identities=13%  Similarity=0.077  Sum_probs=76.6

Q ss_pred             hcceeEEEEeecCCCCCcccchhhcccCCeEEEeecCCceEEecccCccCcccccCCCCccEEEEecCCCCCcCcc--cc
Q 026434           33 VSITQSVGVYQCRSPPFNVFHLAYMENLQELELEYCNLEEMKIDSTDEVKKLFQSGFRSLNTVHVFYCQKAKDLTW--LV  110 (238)
Q Consensus        33 ~~~L~~L~l~~c~~l~~~~~~l~~l~~L~~L~i~~c~l~~i~~~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~--~~  110 (238)
                      ..+++.|++.+.. +......+.++++|+.|+++++.++.+..+        ....+++|+.|++++. +++.++.  +.
T Consensus        30 ~~~l~~L~L~~n~-i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~--------~f~~l~~L~~L~Ls~N-~l~~i~~~~f~   99 (193)
T 2wfh_A           30 PRDVTELYLDGNQ-FTLVPKELSNYKHLTLIDLSNNRISTLSNQ--------SFSNMTQLLTLILSYN-RLRCIPPRTFD   99 (193)
T ss_dssp             CTTCCEEECCSSC-CCSCCGGGGGCTTCCEEECCSSCCCCCCTT--------TTTTCTTCCEEECCSS-CCCBCCTTTTT
T ss_pred             CCCCCEEECCCCc-CchhHHHhhcccCCCEEECCCCcCCEeCHh--------HccCCCCCCEEECCCC-ccCEeCHHHhC
Confidence            3689999998864 233114678899999999999986655322        2346899999999987 6888764  67


Q ss_pred             cCCCccEEEEecccccceecccccccccccccccccccccccceeecccc
Q 026434          111 FVQNLKKLRIEFCDDVEEIIGVDKLRDISEIIGSEHNFFAQLEYLTISWG  160 (238)
Q Consensus       111 ~l~~L~~L~i~~C~~l~~l~~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~  160 (238)
                      .+++|++|++.++ .+..+..            ..+..+++|+.|++.+.
T Consensus       100 ~l~~L~~L~L~~N-~l~~~~~------------~~~~~l~~L~~L~L~~N  136 (193)
T 2wfh_A          100 GLKSLRLLSLHGN-DISVVPE------------GAFNDLSALSHLAIGAN  136 (193)
T ss_dssp             TCTTCCEEECCSS-CCCBCCT------------TTTTTCTTCCEEECCSS
T ss_pred             CCCCCCEEECCCC-CCCeeCh------------hhhhcCccccEEEeCCC
Confidence            8899999999886 4444421            23456889999998754

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=98.00  E-value=4e-05  Score=65.61  Aligned_cols=113  Identities=16%  Similarity=0.152  Sum_probs=82.8

Q ss_pred             ccCCeEEEeecCCceEEecccCccCcccccCCCCccEEEEecCCCCCcCcc--cccCCCccEEEEecccccceecccccc
Q 026434           58 ENLQELELEYCNLEEMKIDSTDEVKKLFQSGFRSLNTVHVFYCQKAKDLTW--LVFVQNLKKLRIEFCDDVEEIIGVDKL  135 (238)
Q Consensus        58 ~~L~~L~i~~c~l~~i~~~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~--~~~l~~L~~L~i~~C~~l~~l~~~~~~  135 (238)
                      ++++.|+++++.+..+..+...       ..+++|+.|+++++ +++.++.  +..+++|++|++.++ +++.+..    
T Consensus        39 ~~l~~L~Ls~N~l~~l~~~~~~-------~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls~N-~l~~~~~----  105 (361)
T 2xot_A           39 SYTALLDLSHNNLSRLRAEWTP-------TRLTNLHSLLLSHN-HLNFISSEAFVPVPNLRYLDLSSN-HLHTLDE----  105 (361)
T ss_dssp             TTCSEEECCSSCCCEECTTSSS-------SCCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSS-CCCEECT----
T ss_pred             CCCCEEECCCCCCCccChhhhh-------hcccccCEEECCCC-cCCccChhhccCCCCCCEEECCCC-cCCcCCH----
Confidence            5789999999987766432221       15899999999987 6877753  678999999999986 4655532    


Q ss_pred             cccccccccccccccccceeeccccccccccCC-CCCCCCCccEEeEcCccCCCCCCCC
Q 026434          136 RDISEIIGSEHNFFAQLEYLTISWGINLKGVYP-NPLPFPKLKKIKVRGCRHLKKLPLN  193 (238)
Q Consensus       136 ~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~-~~~~~~~L~~L~i~~C~~L~~lp~~  193 (238)
                              ..+..+++|+.|+|.+.. ++.+.. ....+++|+.|+++++ +++.+|..
T Consensus       106 --------~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~~  154 (361)
T 2xot_A          106 --------FLFSDLQALEVLLLYNNH-IVVVDRNAFEDMAQLQKLYLSQN-QISRFPVE  154 (361)
T ss_dssp             --------TTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSS-CCCSCCGG
T ss_pred             --------HHhCCCcCCCEEECCCCc-ccEECHHHhCCcccCCEEECCCC-cCCeeCHH
Confidence                    345678999999998763 566543 3456899999999886 56666643

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=98.00  E-value=7.7e-06  Score=74.65  Aligned_cols=148  Identities=10%  Similarity=0.045  Sum_probs=70.3

Q ss_pred             CCCcceeEEeeehHHHHhhhcCchhhcceeEEEEeecCCCCCcccchhhcccCCeEEEeecCCceEEecccCccCccccc
Q 026434            8 KHLKVLSWSFGSSLAVQKFLKYPKLVSITQSVGVYQCRSPPFNVFHLAYMENLQELELEYCNLEEMKIDSTDEVKKLFQS   87 (238)
Q Consensus         8 ~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~c~~l~~~~~~l~~l~~L~~L~i~~c~l~~i~~~~~~~~~~~~~~   87 (238)
                      .+|+.|+++.....   .+.   ...++|+.|++.++. +.. ++.+.+  +|+.|++++|.+..++.            
T Consensus        80 ~~L~~L~Ls~N~l~---~ip---~~l~~L~~L~Ls~N~-l~~-ip~l~~--~L~~L~Ls~N~l~~lp~------------  137 (571)
T 3cvr_A           80 PQITVLEITQNALI---SLP---ELPASLEYLDACDNR-LST-LPELPA--SLKHLDVDNNQLTMLPE------------  137 (571)
T ss_dssp             TTCSEEECCSSCCS---CCC---CCCTTCCEEECCSSC-CSC-CCCCCT--TCCEEECCSSCCSCCCC------------
T ss_pred             CCCCEEECcCCCCc---ccc---cccCCCCEEEccCCC-CCC-cchhhc--CCCEEECCCCcCCCCCC------------
Confidence            45777776533222   222   234678888887763 232 333332  77777777776443321            


Q ss_pred             CCCCccEEEEecCCCCCcCcccccCCCccEEEEecccccceecccccc--------ccccccccccccccccc-------
Q 026434           88 GFRSLNTVHVFYCQKAKDLTWLVFVQNLKKLRIEFCDDVEEIIGVDKL--------RDISEIIGSEHNFFAQL-------  152 (238)
Q Consensus        88 ~l~~L~~L~i~~C~~L~~l~~~~~l~~L~~L~i~~C~~l~~l~~~~~~--------~~~~~~~~~~~~~~p~L-------  152 (238)
                      .+++|+.|+++++ +++.++.  .+++|++|++.++. +..+......        .....+  ..+  .++|       
T Consensus       138 ~l~~L~~L~Ls~N-~l~~lp~--~l~~L~~L~Ls~N~-L~~lp~l~~~L~~L~Ls~N~L~~l--p~~--~~~L~~~~~~L  209 (571)
T 3cvr_A          138 LPALLEYINADNN-QLTMLPE--LPTSLEVLSVRNNQ-LTFLPELPESLEALDVSTNLLESL--PAV--PVRNHHSEETE  209 (571)
T ss_dssp             CCTTCCEEECCSS-CCSCCCC--CCTTCCEEECCSSC-CSCCCCCCTTCCEEECCSSCCSSC--CCC--C--------CC
T ss_pred             cCccccEEeCCCC-ccCcCCC--cCCCcCEEECCCCC-CCCcchhhCCCCEEECcCCCCCch--hhH--HHhhhcccccc
Confidence            2445555555444 3444333  34445555544442 2221100000        000000  001  1144       


Q ss_pred             ceeeccccccccccCCCCCCCCCccEEeEcCccC
Q 026434          153 EYLTISWGINLKGVYPNPLPFPKLKKIKVRGCRH  186 (238)
Q Consensus       153 ~~L~L~~~~~L~~i~~~~~~~~~L~~L~i~~C~~  186 (238)
                      +.|++.++ .++.++.....+++|+.|++.+++-
T Consensus       210 ~~L~Ls~N-~l~~lp~~l~~l~~L~~L~L~~N~l  242 (571)
T 3cvr_A          210 IFFRCREN-RITHIPENILSLDPTCTIILEDNPL  242 (571)
T ss_dssp             EEEECCSS-CCCCCCGGGGGSCTTEEEECCSSSC
T ss_pred             eEEecCCC-cceecCHHHhcCCCCCEEEeeCCcC
Confidence            77777664 4666665555577888888877754

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=97.97  E-value=4.6e-07  Score=71.10  Aligned_cols=107  Identities=18%  Similarity=0.202  Sum_probs=61.3

Q ss_pred             chhhcccCCeEEEeecCCceEEecccCccCcccccCCCCccEEEEecCCCCCcCcc-cccCCCccEEEEecccccceecc
Q 026434           53 HLAYMENLQELELEYCNLEEMKIDSTDEVKKLFQSGFRSLNTVHVFYCQKAKDLTW-LVFVQNLKKLRIEFCDDVEEIIG  131 (238)
Q Consensus        53 ~l~~l~~L~~L~i~~c~l~~i~~~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~-~~~l~~L~~L~i~~C~~l~~l~~  131 (238)
                      .+.++++|+.|++++|.++.+.          ....+++|+.|+++++ +++.++. ...+++|++|++.++ .+..+  
T Consensus        43 ~~~~l~~L~~L~ls~n~l~~l~----------~~~~l~~L~~L~l~~n-~l~~l~~~~~~~~~L~~L~L~~N-~l~~l--  108 (198)
T 1ds9_A           43 TLSTLKACKHLALSTNNIEKIS----------SLSGMENLRILSLGRN-LIKKIENLDAVADTLEELWISYN-QIASL--  108 (198)
T ss_dssp             HHHHTTTCSEEECSEEEESCCC----------CHHHHTTCCEEEEEEE-EECSCSSHHHHHHHCSEEEEEEE-ECCCH--
T ss_pred             HHhcCCCCCEEECCCCCCcccc----------ccccCCCCCEEECCCC-CcccccchhhcCCcCCEEECcCC-cCCcC--
Confidence            4566777777777777644332          1234667777777776 4555553 234567777777766 33332  


Q ss_pred             cccccccccccccccccccccceeeccccccccccCC--CCCCCCCccEEeEcCccC
Q 026434          132 VDKLRDISEIIGSEHNFFAQLEYLTISWGINLKGVYP--NPLPFPKLKKIKVRGCRH  186 (238)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~--~~~~~~~L~~L~i~~C~~  186 (238)
                                  ..+..+++|+.|++.++. ++++..  ....+++|+.|++.+++-
T Consensus       109 ------------~~~~~l~~L~~L~l~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~l  152 (198)
T 1ds9_A          109 ------------SGIEKLVNLRVLYMSNNK-ITNWGEIDKLAALDKLEDLLLAGNPL  152 (198)
T ss_dssp             ------------HHHHHHHHSSEEEESEEE-CCCHHHHHHHTTTTTCSEEEECSCHH
T ss_pred             ------------CccccCCCCCEEECCCCc-CCchhHHHHHhcCCCCCEEEecCCcc
Confidence                        123356677777776542 332221  123467777777776643

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=97.95  E-value=2e-06  Score=74.14  Aligned_cols=47  Identities=11%  Similarity=-0.001  Sum_probs=22.5

Q ss_pred             HHhhhcCchhhcceeEEEEeecCCCC-------C-cccc-hhhcccCCeEEEeecC
Q 026434           23 VQKFLKYPKLVSITQSVGVYQCRSPP-------F-NVFH-LAYMENLQELELEYCN   69 (238)
Q Consensus        23 l~~l~~~~~l~~~L~~L~l~~c~~l~-------~-~~~~-l~~l~~L~~L~i~~c~   69 (238)
                      ++.+.......++|+.|.|.+...-.       . .+.. +..+|+|+.|.|++|.
T Consensus       128 ~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~  183 (362)
T 2ra8_A          128 ADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTN  183 (362)
T ss_dssp             HHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCB
T ss_pred             HHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCC
Confidence            44444444444567777665432100       0 1111 2445667777776653

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=97.92  E-value=2.8e-07  Score=72.37  Aligned_cols=105  Identities=15%  Similarity=0.146  Sum_probs=76.9

Q ss_pred             hcceeEEEEeecCCCCCcccchhhcccCCeEEEeecCCceEEecccCccCcccccCCCCccEEEEecCCCCCcCcccccC
Q 026434           33 VSITQSVGVYQCRSPPFNVFHLAYMENLQELELEYCNLEEMKIDSTDEVKKLFQSGFRSLNTVHVFYCQKAKDLTWLVFV  112 (238)
Q Consensus        33 ~~~L~~L~l~~c~~l~~~~~~l~~l~~L~~L~i~~c~l~~i~~~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~l  112 (238)
                      .++|+.|++.++. +.. ++.+.++++|+.|++++|.+..+.         .....+++|+.|+++++ +++.++.+..+
T Consensus        47 l~~L~~L~ls~n~-l~~-l~~~~~l~~L~~L~l~~n~l~~l~---------~~~~~~~~L~~L~L~~N-~l~~l~~~~~l  114 (198)
T 1ds9_A           47 LKACKHLALSTNN-IEK-ISSLSGMENLRILSLGRNLIKKIE---------NLDAVADTLEELWISYN-QIASLSGIEKL  114 (198)
T ss_dssp             TTTCSEEECSEEE-ESC-CCCHHHHTTCCEEEEEEEEECSCS---------SHHHHHHHCSEEEEEEE-ECCCHHHHHHH
T ss_pred             CCCCCEEECCCCC-Ccc-ccccccCCCCCEEECCCCCccccc---------chhhcCCcCCEEECcCC-cCCcCCccccC
Confidence            3689999998874 333 457888999999999999854442         11234678999999998 68888777888


Q ss_pred             CCccEEEEecccccceecccccccccccccccccccccccceeeccccc
Q 026434          113 QNLKKLRIEFCDDVEEIIGVDKLRDISEIIGSEHNFFAQLEYLTISWGI  161 (238)
Q Consensus       113 ~~L~~L~i~~C~~l~~l~~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~  161 (238)
                      ++|++|++.++ .+..+...           ..+..+++|++|++.+++
T Consensus       115 ~~L~~L~l~~N-~i~~~~~~-----------~~l~~l~~L~~L~l~~N~  151 (198)
T 1ds9_A          115 VNLRVLYMSNN-KITNWGEI-----------DKLAALDKLEDLLLAGNP  151 (198)
T ss_dssp             HHSSEEEESEE-ECCCHHHH-----------HHHTTTTTCSEEEECSCH
T ss_pred             CCCCEEECCCC-cCCchhHH-----------HHHhcCCCCCEEEecCCc
Confidence            99999999887 33332110           234568999999998764

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=97.88  E-value=7.1e-05  Score=58.22  Aligned_cols=106  Identities=14%  Similarity=0.118  Sum_probs=75.7

Q ss_pred             ccCCeEEEeecCCceEEecccCccCcccccCCCCccEEEEecCCCCCcCc--ccccCCCccEEEEecccccceecccccc
Q 026434           58 ENLQELELEYCNLEEMKIDSTDEVKKLFQSGFRSLNTVHVFYCQKAKDLT--WLVFVQNLKKLRIEFCDDVEEIIGVDKL  135 (238)
Q Consensus        58 ~~L~~L~i~~c~l~~i~~~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~--~~~~l~~L~~L~i~~C~~l~~l~~~~~~  135 (238)
                      .+|+.|+++++.+..+....       ....+++|+.|+++++ +++.+.  .+..+++|++|+++++ .+..+..    
T Consensus        29 ~~l~~L~l~~n~i~~~~~~~-------~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~----   95 (192)
T 1w8a_A           29 LHTTELLLNDNELGRISSDG-------LFGRLPHLVKLELKRN-QLTGIEPNAFEGASHIQELQLGEN-KIKEISN----   95 (192)
T ss_dssp             TTCSEEECCSCCCCSBCCSC-------SGGGCTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCSC-CCCEECS----
T ss_pred             CCCCEEECCCCcCCccCCcc-------ccccCCCCCEEECCCC-CCCCcCHhHcCCcccCCEEECCCC-cCCccCH----
Confidence            38999999988865553211       1346889999999987 577763  4678899999999886 4555432    


Q ss_pred             cccccccccccccccccceeeccccccccccCC-CCCCCCCccEEeEcCcc
Q 026434          136 RDISEIIGSEHNFFAQLEYLTISWGINLKGVYP-NPLPFPKLKKIKVRGCR  185 (238)
Q Consensus       136 ~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~-~~~~~~~L~~L~i~~C~  185 (238)
                              ..+..+++|++|++++. +++.+.. ....+++|+.|++.+.+
T Consensus        96 --------~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~  137 (192)
T 1w8a_A           96 --------KMFLGLHQLKTLNLYDN-QISCVMPGSFEHLNSLTSLNLASNP  137 (192)
T ss_dssp             --------SSSTTCTTCCEEECCSS-CCCEECTTSSTTCTTCCEEECTTCC
T ss_pred             --------HHhcCCCCCCEEECCCC-cCCeeCHHHhhcCCCCCEEEeCCCC
Confidence                    34566899999999875 4555533 34567899999987754

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=97.86  E-value=2.4e-05  Score=71.32  Aligned_cols=105  Identities=14%  Similarity=0.166  Sum_probs=63.5

Q ss_pred             cCCeEEEeecCCceEEecccCccCcccccCCCCccEEEEecCCCCCcCc-ccccCCCccEEEEecccccceecccccccc
Q 026434           59 NLQELELEYCNLEEMKIDSTDEVKKLFQSGFRSLNTVHVFYCQKAKDLT-WLVFVQNLKKLRIEFCDDVEEIIGVDKLRD  137 (238)
Q Consensus        59 ~L~~L~i~~c~l~~i~~~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~-~~~~l~~L~~L~i~~C~~l~~l~~~~~~~~  137 (238)
                      .|+.|++++|.++.+          +....+++|+.|+++++ +++.+| .++.+++|++|+++++ .+..+        
T Consensus       442 ~L~~L~Ls~n~l~~l----------p~~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~N-~l~~l--------  501 (567)
T 1dce_A          442 DVRVLHLAHKDLTVL----------CHLEQLLLVTHLDLSHN-RLRALPPALAALRCLEVLQASDN-ALENV--------  501 (567)
T ss_dssp             TCSEEECTTSCCSSC----------CCGGGGTTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCSS-CCCCC--------
T ss_pred             CceEEEecCCCCCCC----------cCccccccCcEeecCcc-cccccchhhhcCCCCCEEECCCC-CCCCC--------
Confidence            355555555553333          12345677777777776 566665 3567777777777765 33333        


Q ss_pred             cccccccccccccccceeecccccccccc--CCCCCCCCCccEEeEcCccCCCCCC
Q 026434          138 ISEIIGSEHNFFAQLEYLTISWGINLKGV--YPNPLPFPKLKKIKVRGCRHLKKLP  191 (238)
Q Consensus       138 ~~~~~~~~~~~~p~L~~L~L~~~~~L~~i--~~~~~~~~~L~~L~i~~C~~L~~lp  191 (238)
                            ..+..+++|+.|+|++. .++++  +.....+++|+.|++++++ ++.+|
T Consensus       502 ------p~l~~l~~L~~L~Ls~N-~l~~~~~p~~l~~l~~L~~L~L~~N~-l~~~~  549 (567)
T 1dce_A          502 ------DGVANLPRLQELLLCNN-RLQQSAAIQPLVSCPRLVLLNLQGNS-LCQEE  549 (567)
T ss_dssp             ------GGGTTCSSCCEEECCSS-CCCSSSTTGGGGGCTTCCEEECTTSG-GGGSS
T ss_pred             ------cccCCCCCCcEEECCCC-CCCCCCCcHHHhcCCCCCEEEecCCc-CCCCc
Confidence                  23445777888877764 45555  3344567778888887764 44444

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=97.70  E-value=3.8e-05  Score=72.01  Aligned_cols=102  Identities=14%  Similarity=0.035  Sum_probs=75.2

Q ss_pred             cceeEEEEeecCCCCCcccchhhcccCCeEEEeecCCceEEecccCccCcccccCCCCccEEEEecCCCCCcCc-ccccC
Q 026434           34 SITQSVGVYQCRSPPFNVFHLAYMENLQELELEYCNLEEMKIDSTDEVKKLFQSGFRSLNTVHVFYCQKAKDLT-WLVFV  112 (238)
Q Consensus        34 ~~L~~L~l~~c~~l~~~~~~l~~l~~L~~L~i~~c~l~~i~~~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~-~~~~l  112 (238)
                      ..|+.|+|.++.- ......+.++++|+.|++++|.+..++         .....+++|+.|+++++ +++.+| .+..+
T Consensus       224 ~~L~~L~Ls~n~l-~~l~~~~~~l~~L~~L~Ls~N~l~~lp---------~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~l  292 (727)
T 4b8c_D          224 QLWHALDLSNLQI-FNISANIFKYDFLTRLYLNGNSLTELP---------AEIKNLSNLRVLDLSHN-RLTSLPAELGSC  292 (727)
T ss_dssp             CCCCEEECTTSCC-SCCCGGGGGCCSCSCCBCTTSCCSCCC---------GGGGGGTTCCEEECTTS-CCSSCCSSGGGG
T ss_pred             CCCcEEECCCCCC-CCCChhhcCCCCCCEEEeeCCcCcccC---------hhhhCCCCCCEEeCcCC-cCCccChhhcCC
Confidence            5788888887753 221234668899999999999865552         22356899999999988 577776 46789


Q ss_pred             CCccEEEEecccccceecccccccccccccccccccccccceeecccc
Q 026434          113 QNLKKLRIEFCDDVEEIIGVDKLRDISEIIGSEHNFFAQLEYLTISWG  160 (238)
Q Consensus       113 ~~L~~L~i~~C~~l~~l~~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~  160 (238)
                      ++|++|++.++ .+..++             ..+..+++|+.|+|++.
T Consensus       293 ~~L~~L~L~~N-~l~~lp-------------~~~~~l~~L~~L~L~~N  326 (727)
T 4b8c_D          293 FQLKYFYFFDN-MVTTLP-------------WEFGNLCNLQFLGVEGN  326 (727)
T ss_dssp             TTCSEEECCSS-CCCCCC-------------SSTTSCTTCCCEECTTS
T ss_pred             CCCCEEECCCC-CCCccC-------------hhhhcCCCccEEeCCCC
Confidence            99999999987 455442             34667889999988765

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=97.65  E-value=0.00026  Score=54.17  Aligned_cols=34  Identities=12%  Similarity=0.052  Sum_probs=15.5

Q ss_pred             CCCCccEEEEecCCCCCcCcc--cccCCCccEEEEec
Q 026434           88 GFRSLNTVHVFYCQKAKDLTW--LVFVQNLKKLRIEF  122 (238)
Q Consensus        88 ~l~~L~~L~i~~C~~L~~l~~--~~~l~~L~~L~i~~  122 (238)
                      .+++|+.|++++. +++.++.  +..+++|++|++++
T Consensus        55 ~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~   90 (174)
T 2r9u_A           55 HLVNLQQLYFNSN-KLTAIPTGVFDKLTQLTQLDLND   90 (174)
T ss_dssp             TCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCcCCCEEECCCC-CCCccChhHhCCcchhhEEECCC
Confidence            3445555555444 3444432  23444555554444

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=97.63  E-value=0.00026  Score=53.96  Aligned_cols=35  Identities=20%  Similarity=0.139  Sum_probs=14.9

Q ss_pred             cccccceeeccccccccccCCC-CCCCCCccEEeEcC
Q 026434          148 FFAQLEYLTISWGINLKGVYPN-PLPFPKLKKIKVRG  183 (238)
Q Consensus       148 ~~p~L~~L~L~~~~~L~~i~~~-~~~~~~L~~L~i~~  183 (238)
                      .+++|++|+|++. +++.+... ...+++|+.|++.+
T Consensus        76 ~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~  111 (170)
T 3g39_A           76 KLTQLTQLSLNDN-QLKSIPRGAFDNLKSLTHIWLLN  111 (170)
T ss_dssp             TCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCCCCCEEECCCC-ccCEeCHHHhcCCCCCCEEEeCC
Confidence            3444555544433 23333332 22344555555443

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=97.63  E-value=0.00012  Score=62.95  Aligned_cols=132  Identities=17%  Similarity=0.141  Sum_probs=69.9

Q ss_pred             cceeEEEEeecCCCCCcccchhhcccCCeEEEeecCCceEEecccCccCcccccCCCCccEEEEecCC-------CCCcC
Q 026434           34 SITQSVGVYQCRSPPFNVFHLAYMENLQELELEYCNLEEMKIDSTDEVKKLFQSGFRSLNTVHVFYCQ-------KAKDL  106 (238)
Q Consensus        34 ~~L~~L~l~~c~~l~~~~~~l~~l~~L~~L~i~~c~l~~i~~~~~~~~~~~~~~~l~~L~~L~i~~C~-------~L~~l  106 (238)
                      ++|+.|.|.++.++.  ++.+. +++|++|++..|.+..-.+...      ....+|+|++|.++.+.       .++.+
T Consensus       172 P~L~~L~L~g~~~l~--l~~~~-~~~L~~L~L~~~~l~~~~l~~l------~~~~lp~L~~L~L~~~~~~~~~~~~~~~l  242 (362)
T 2ra8_A          172 PLLNNLKIKGTNNLS--IGKKP-RPNLKSLEIISGGLPDSVVEDI------LGSDLPNLEKLVLYVGVEDYGFDGDMNVF  242 (362)
T ss_dssp             TTCCEEEEECCBTCB--CCSCB-CTTCSEEEEECSBCCHHHHHHH------HHSBCTTCCEEEEECBCGGGTCCSCGGGT
T ss_pred             CCCcEEEEeCCCCce--ecccc-CCCCcEEEEecCCCChHHHHHH------HHccCCCCcEEEEeccccccccchhHHHH
Confidence            478888887764432  22232 6788888887766321100000      01247788888875321       12222


Q ss_pred             cc---cccCCCccEEEEecccccceecccccccccccccccccccccccceeeccccccccc-----cCCCCCCCCCccE
Q 026434          107 TW---LVFVQNLKKLRIEFCDDVEEIIGVDKLRDISEIIGSEHNFFAQLEYLTISWGINLKG-----VYPNPLPFPKLKK  178 (238)
Q Consensus       107 ~~---~~~l~~L~~L~i~~C~~l~~l~~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~-----i~~~~~~~~~L~~  178 (238)
                      ..   ...+|+|++|.+.+|.-.....     ...     .....+|+|++|+|+. ..+..     +......+++|+.
T Consensus       243 ~~~l~~~~~p~Lr~L~L~~~~i~~~~~-----~~l-----a~a~~~~~L~~LdLs~-n~L~d~G~~~L~~~L~~l~~L~~  311 (362)
T 2ra8_A          243 RPLFSKDRFPNLKWLGIVDAEEQNVVV-----EMF-----LESDILPQLETMDISA-GVLTDEGARLLLDHVDKIKHLKF  311 (362)
T ss_dssp             GGGSCTTTCTTCCEEEEESCTTHHHHH-----HHH-----HHCSSGGGCSEEECCS-SCCBHHHHHHHHTTHHHHTTCSE
T ss_pred             HHHHhcCCCCCcCEEeCCCCCCchHHH-----HHH-----HhCccCCCCCEEECCC-CCCChHHHHHHHhhcccCCcceE
Confidence            21   1347888888887764221110     000     1123477888888854 34443     2222235678888


Q ss_pred             EeEcCcc
Q 026434          179 IKVRGCR  185 (238)
Q Consensus       179 L~i~~C~  185 (238)
                      |++++|.
T Consensus       312 L~L~~n~  318 (362)
T 2ra8_A          312 INMKYNY  318 (362)
T ss_dssp             EECCSBB
T ss_pred             EECCCCc
Confidence            8887773

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=97.63  E-value=2.6e-06  Score=74.84  Aligned_cols=85  Identities=15%  Similarity=0.108  Sum_probs=47.9

Q ss_pred             CCccEEEEecCCCCCcC------cccccCCCccEEEEecccccceeccccccccccccccccc-ccccccceeecccccc
Q 026434           90 RSLNTVHVFYCQKAKDL------TWLVFVQNLKKLRIEFCDDVEEIIGVDKLRDISEIIGSEH-NFFAQLEYLTISWGIN  162 (238)
Q Consensus        90 ~~L~~L~i~~C~~L~~l------~~~~~l~~L~~L~i~~C~~l~~l~~~~~~~~~~~~~~~~~-~~~p~L~~L~L~~~~~  162 (238)
                      ++|+.|++++|. +...      .++..+++|++|+++++ .+.....    ....    ..+ ...++|++|+++++ .
T Consensus       313 ~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~----~~l~----~~l~~~~~~L~~L~L~~n-~  381 (461)
T 1z7x_W          313 CQLESLWVKSCS-FTAACCSHFSSVLAQNRFLLELQISNN-RLEDAGV----RELC----QGLGQPGSVLRVLWLADC-D  381 (461)
T ss_dssp             CCCCEEECTTSC-CBGGGHHHHHHHHHHCSSCCEEECCSS-BCHHHHH----HHHH----HHHTSTTCCCCEEECTTS-C
T ss_pred             ccceeeEcCCCC-CchHHHHHHHHHHhhCCCccEEEccCC-ccccccH----HHHH----HHHcCCCCceEEEECCCC-C
Confidence            577777777773 4442      12345677888877776 3322100    0000    001 12568888888877 3


Q ss_pred             cc-----ccCCCCCCCCCccEEeEcCcc
Q 026434          163 LK-----GVYPNPLPFPKLKKIKVRGCR  185 (238)
Q Consensus       163 L~-----~i~~~~~~~~~L~~L~i~~C~  185 (238)
                      ++     .++.....+++|+.|++++|+
T Consensus       382 i~~~~~~~l~~~l~~~~~L~~L~l~~N~  409 (461)
T 1z7x_W          382 VSDSSCSSLAATLLANHSLRELDLSNNC  409 (461)
T ss_dssp             CCHHHHHHHHHHHHHCCCCCEEECCSSS
T ss_pred             CChhhHHHHHHHHHhCCCccEEECCCCC
Confidence            44     232222347889999998884

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=97.58  E-value=0.0006  Score=57.35  Aligned_cols=40  Identities=13%  Similarity=0.116  Sum_probs=17.1

Q ss_pred             cccccceeeccccccccccCCCC-CCCCCcc-EEeEcCccCCCCCC
Q 026434          148 FFAQLEYLTISWGINLKGVYPNP-LPFPKLK-KIKVRGCRHLKKLP  191 (238)
Q Consensus       148 ~~p~L~~L~L~~~~~L~~i~~~~-~~~~~L~-~L~i~~C~~L~~lp  191 (238)
                      .+++|+.+.+.+  +++.|.... ..+++|+ .+.+.+  +++.++
T Consensus       248 ~~~~L~~l~l~~--ni~~I~~~aF~~~~~L~~~l~l~~--~l~~I~  289 (329)
T 3sb4_A          248 QKKYLLKIKLPH--NLKTIGQRVFSNCGRLAGTLELPA--SVTAIE  289 (329)
T ss_dssp             TCTTCCEEECCT--TCCEECTTTTTTCTTCCEEEEECT--TCCEEC
T ss_pred             CCCCCCEEECCc--ccceehHHHhhCChhccEEEEEcc--cceEEc
Confidence            344555555443  244444322 2344444 444444  444444

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=97.57  E-value=2.7e-06  Score=74.77  Aligned_cols=84  Identities=11%  Similarity=0.110  Sum_probs=39.4

Q ss_pred             ceeEEEEeecCCCCC-c----ccchhhcccCCeEEEeecCCceEEecccCccCcccccCCCCccEEEEecCCCCCcC---
Q 026434           35 ITQSVGVYQCRSPPF-N----VFHLAYMENLQELELEYCNLEEMKIDSTDEVKKLFQSGFRSLNTVHVFYCQKAKDL---  106 (238)
Q Consensus        35 ~L~~L~l~~c~~l~~-~----~~~l~~l~~L~~L~i~~c~l~~i~~~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l---  106 (238)
                      +|++|++.+|. +.. .    ...+..+++|++|++++|.+..........   .-....++|+.|++++| ++...   
T Consensus       143 ~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~---~l~~~~~~L~~L~L~~n-~l~~~~~~  217 (461)
T 1z7x_W          143 RLEKLQLEYCS-LSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQ---GLKDSPCQLEALKLESC-GVTSDNCR  217 (461)
T ss_dssp             CCCEEECTTSC-CBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHH---HHHHSCCCCCEEECTTS-CCBTTHHH
T ss_pred             cceEEECCCCC-CCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHH---HHhcCCCCceEEEccCC-CCcHHHHH
Confidence            46666666653 221 1    112344566777776666522111000000   00012446777777766 34442   


Q ss_pred             --c-ccccCCCccEEEEecc
Q 026434          107 --T-WLVFVQNLKKLRIEFC  123 (238)
Q Consensus       107 --~-~~~~l~~L~~L~i~~C  123 (238)
                        + .+..+++|++|++++|
T Consensus       218 ~l~~~l~~~~~L~~L~Ls~n  237 (461)
T 1z7x_W          218 DLCGIVASKASLRELALGSN  237 (461)
T ss_dssp             HHHHHHHHCTTCCEEECCSS
T ss_pred             HHHHHHHhCCCccEEeccCC
Confidence              1 2345667777777665

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=97.45  E-value=0.00026  Score=54.22  Aligned_cols=82  Identities=15%  Similarity=0.071  Sum_probs=53.7

Q ss_pred             CCCccEEEEecCCCCCcCcc--cccCCCccEEEEecccccceecccccccccccccccccccccccceeecccccccccc
Q 026434           89 FRSLNTVHVFYCQKAKDLTW--LVFVQNLKKLRIEFCDDVEEIIGVDKLRDISEIIGSEHNFFAQLEYLTISWGINLKGV  166 (238)
Q Consensus        89 l~~L~~L~i~~C~~L~~l~~--~~~l~~L~~L~i~~C~~l~~l~~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i  166 (238)
                      .++|+.|++++. +++.+++  +..+++|++|++++. ++..+..            .....+++|+.|+|++. .++.+
T Consensus        32 ~~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~i~~------------~~~~~l~~L~~L~L~~N-~l~~l   96 (174)
T 2r9u_A           32 PTDKQRLWLNNN-QITKLEPGVFDHLVNLQQLYFNSN-KLTAIPT------------GVFDKLTQLTQLDLNDN-HLKSI   96 (174)
T ss_dssp             CTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCT------------TTTTTCTTCCEEECCSS-CCCCC
T ss_pred             CCCCcEEEeCCC-CccccCHHHhcCCcCCCEEECCCC-CCCccCh------------hHhCCcchhhEEECCCC-cccee
Confidence            467778887776 4666643  567788888888776 4554421            22346778888888764 56666


Q ss_pred             CCC-CCCCCCccEEeEcCcc
Q 026434          167 YPN-PLPFPKLKKIKVRGCR  185 (238)
Q Consensus       167 ~~~-~~~~~~L~~L~i~~C~  185 (238)
                      +.. ...+++|+.|++.+.+
T Consensus        97 ~~~~~~~l~~L~~L~L~~N~  116 (174)
T 2r9u_A           97 PRGAFDNLKSLTHIYLYNNP  116 (174)
T ss_dssp             CTTTTTTCTTCSEEECCSSC
T ss_pred             CHHHhccccCCCEEEeCCCC
Confidence            654 4457788888877654

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=97.36  E-value=0.00057  Score=57.75  Aligned_cols=87  Identities=22%  Similarity=0.312  Sum_probs=61.7

Q ss_pred             ccchhhcccCCeEEEee-cCCceEEecccCccCcccccCCCCccEEEEecCCCCCcCcc--cccCCCccEEEEecccccc
Q 026434           51 VFHLAYMENLQELELEY-CNLEEMKIDSTDEVKKLFQSGFRSLNTVHVFYCQKAKDLTW--LVFVQNLKKLRIEFCDDVE  127 (238)
Q Consensus        51 ~~~l~~l~~L~~L~i~~-c~l~~i~~~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~--~~~l~~L~~L~i~~C~~l~  127 (238)
                      ++.+..+++|+.|++++ +.+..+..+.        ...+++|+.|++++. +|+.++.  +..+++|++|++++. ++.
T Consensus        24 ip~l~~~~~L~~L~l~~~n~l~~~~~~~--------~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N-~l~   93 (347)
T 2ifg_A           24 LHHLPGAENLTELYIENQQHLQHLELRD--------LRGLGELRNLTIVKS-GLRFVAPDAFHFTPRLSRLNLSFN-ALE   93 (347)
T ss_dssp             TTTSCSCSCCSEEECCSCSSCCEECGGG--------SCSCCCCSEEECCSS-CCCEECTTGGGSCSCCCEEECCSS-CCS
T ss_pred             cCCCCCCCCeeEEEccCCCCCCCcChhH--------hccccCCCEEECCCC-ccceeCHHHhcCCcCCCEEeCCCC-ccc
Confidence            44578888999999997 4488774322        346899999999987 6888753  578999999999875 555


Q ss_pred             eecccccccccccccccccccccccceeecccc
Q 026434          128 EIIGVDKLRDISEIIGSEHNFFAQLEYLTISWG  160 (238)
Q Consensus       128 ~l~~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~  160 (238)
                      .++.            .....++ |+.|.|.+.
T Consensus        94 ~~~~------------~~~~~~~-L~~l~l~~N  113 (347)
T 2ifg_A           94 SLSW------------KTVQGLS-LQELVLSGN  113 (347)
T ss_dssp             CCCS------------TTTCSCC-CCEEECCSS
T ss_pred             eeCH------------HHcccCC-ceEEEeeCC
Confidence            5432            1222233 888888653

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=97.36  E-value=2.5e-05  Score=66.82  Aligned_cols=14  Identities=7%  Similarity=0.024  Sum_probs=9.1

Q ss_pred             CCCCccEEeEcCcc
Q 026434          172 PFPKLKKIKVRGCR  185 (238)
Q Consensus       172 ~~~~L~~L~i~~C~  185 (238)
                      .+++|+.|++++|.
T Consensus       251 ~l~~L~~L~L~~n~  264 (362)
T 3goz_A          251 SLKHLQTVYLDYDI  264 (362)
T ss_dssp             TTTTCSEEEEEHHH
T ss_pred             cCCCccEEEeccCC
Confidence            45667777777664

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=97.31  E-value=0.00048  Score=52.38  Aligned_cols=80  Identities=11%  Similarity=0.046  Sum_probs=46.7

Q ss_pred             ccCCeEEEeecCCceEEecccCccCcccccCCCCccEEEEecCCCCCcCcc--cccCCCccEEEEecccccceecccccc
Q 026434           58 ENLQELELEYCNLEEMKIDSTDEVKKLFQSGFRSLNTVHVFYCQKAKDLTW--LVFVQNLKKLRIEFCDDVEEIIGVDKL  135 (238)
Q Consensus        58 ~~L~~L~i~~c~l~~i~~~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~--~~~l~~L~~L~i~~C~~l~~l~~~~~~  135 (238)
                      ++|+.|+++++.++.+..+        ....+++|+.|++++. +++.++.  +..+++|++|++++. ++..+..    
T Consensus        30 ~~l~~L~L~~N~i~~~~~~--------~~~~l~~L~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~N-~l~~~~~----   95 (170)
T 3g39_A           30 TTTQVLYLYDNQITKLEPG--------VFDRLTQLTRLDLDNN-QLTVLPAGVFDKLTQLTQLSLNDN-QLKSIPR----   95 (170)
T ss_dssp             TTCSEEECCSSCCCCCCTT--------TTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCT----
T ss_pred             CCCcEEEcCCCcCCccChh--------hhcCcccCCEEECCCC-CcCccChhhccCCCCCCEEECCCC-ccCEeCH----
Confidence            5677777777664444211        1234667777777765 5666653  356777777777665 3443321    


Q ss_pred             cccccccccccccccccceeeccc
Q 026434          136 RDISEIIGSEHNFFAQLEYLTISW  159 (238)
Q Consensus       136 ~~~~~~~~~~~~~~p~L~~L~L~~  159 (238)
                              ..+..+++|+.|+|.+
T Consensus        96 --------~~~~~l~~L~~L~L~~  111 (170)
T 3g39_A           96 --------GAFDNLKSLTHIWLLN  111 (170)
T ss_dssp             --------TTTTTCTTCCEEECCS
T ss_pred             --------HHhcCCCCCCEEEeCC
Confidence                    2344566777777754

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=97.19  E-value=0.003  Score=53.01  Aligned_cols=32  Identities=28%  Similarity=0.137  Sum_probs=13.0

Q ss_pred             ccccceeeccccccccccCCCC-CCCCCccEEeE
Q 026434          149 FAQLEYLTISWGINLKGVYPNP-LPFPKLKKIKV  181 (238)
Q Consensus       149 ~p~L~~L~L~~~~~L~~i~~~~-~~~~~L~~L~i  181 (238)
                      +++|+.++|.+. +++.|+... ..+++|+.|++
T Consensus       225 ~~~L~~l~L~~n-~i~~I~~~aF~~~~~L~~l~l  257 (329)
T 3sb4_A          225 MPNLVSLDISKT-NATTIPDFTFAQKKYLLKIKL  257 (329)
T ss_dssp             CTTCCEEECTTB-CCCEECTTTTTTCTTCCEEEC
T ss_pred             cCCCeEEECCCC-CcceecHhhhhCCCCCCEEEC
Confidence            344555444432 134443321 23444444444

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=97.11  E-value=0.0023  Score=53.93  Aligned_cols=85  Identities=18%  Similarity=0.207  Sum_probs=60.0

Q ss_pred             ccCCCCccEEEEecCCCCCcCcc--cccCCCccEEEEecccccceecccccccccccccccccccccccceeeccccccc
Q 026434           86 QSGFRSLNTVHVFYCQKAKDLTW--LVFVQNLKKLRIEFCDDVEEIIGVDKLRDISEIIGSEHNFFAQLEYLTISWGINL  163 (238)
Q Consensus        86 ~~~l~~L~~L~i~~C~~L~~l~~--~~~l~~L~~L~i~~C~~l~~l~~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L  163 (238)
                      ...+.+|+.|++++..+++.++.  +..+++|+.|++++. ++..+++            ..+..+++|+.|+|++. +|
T Consensus        27 l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~------------~~~~~l~~L~~L~l~~N-~l   92 (347)
T 2ifg_A           27 LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS-GLRFVAP------------DAFHFTPRLSRLNLSFN-AL   92 (347)
T ss_dssp             SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSS-CCCEECT------------TGGGSCSCCCEEECCSS-CC
T ss_pred             CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCC-ccceeCH------------HHhcCCcCCCEEeCCCC-cc
Confidence            45677889999987668888763  667889999998876 5666542            34456888899888863 57


Q ss_pred             cccCCCCCCCCCccEEeEcCc
Q 026434          164 KGVYPNPLPFPKLKKIKVRGC  184 (238)
Q Consensus       164 ~~i~~~~~~~~~L~~L~i~~C  184 (238)
                      +.++.......+|+.|++.+.
T Consensus        93 ~~~~~~~~~~~~L~~l~l~~N  113 (347)
T 2ifg_A           93 ESLSWKTVQGLSLQELVLSGN  113 (347)
T ss_dssp             SCCCSTTTCSCCCCEEECCSS
T ss_pred             ceeCHHHcccCCceEEEeeCC
Confidence            777654433334888877654

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=97.01  E-value=7.1e-05  Score=63.98  Aligned_cols=135  Identities=10%  Similarity=0.022  Sum_probs=73.2

Q ss_pred             ceeEEEEeecCCCCC-cccchhhc-----ccCCeEEEeecCCceEEecccCccCcccccCC-CCccEEEEecCCCCCcCc
Q 026434           35 ITQSVGVYQCRSPPF-NVFHLAYM-----ENLQELELEYCNLEEMKIDSTDEVKKLFQSGF-RSLNTVHVFYCQKAKDLT  107 (238)
Q Consensus        35 ~L~~L~l~~c~~l~~-~~~~l~~l-----~~L~~L~i~~c~l~~i~~~~~~~~~~~~~~~l-~~L~~L~i~~C~~L~~l~  107 (238)
                      +|+.|++.+|. +.. ....+..+     ++|++|++++|.+.........    .....+ ++|+.|++++|. +....
T Consensus        52 ~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~----~~l~~~~~~L~~L~Ls~N~-l~~~~  125 (362)
T 3goz_A           52 SVTSLNLSGNS-LGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELV----KTLAAIPFTITVLDLGWND-FSSKS  125 (362)
T ss_dssp             TCCEEECCSSC-GGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHH----HHHHTSCTTCCEEECCSSC-GGGSC
T ss_pred             ceeEEECcCCC-CCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHH----HHHHhCCCCccEEECcCCc-CCcHH
Confidence            67888887773 222 22233333     7788888888774322111000    001223 678888888873 65543


Q ss_pred             c------ccc-CCCccEEEEecccccceeccccccccccccccccccccc-ccceeeccccccccccCC-----CCCCC-
Q 026434          108 W------LVF-VQNLKKLRIEFCDDVEEIIGVDKLRDISEIIGSEHNFFA-QLEYLTISWGINLKGVYP-----NPLPF-  173 (238)
Q Consensus       108 ~------~~~-l~~L~~L~i~~C~~l~~l~~~~~~~~~~~~~~~~~~~~p-~L~~L~L~~~~~L~~i~~-----~~~~~-  173 (238)
                      .      +.. .++|++|++++|. +...    ......    ..+..++ +|++|+++++ .++....     ....+ 
T Consensus       126 ~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~----~~~~l~----~~l~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~  195 (362)
T 3goz_A          126 SSEFKQAFSNLPASITSLNLRGND-LGIK----SSDELI----QILAAIPANVNSLNLRGN-NLASKNCAELAKFLASIP  195 (362)
T ss_dssp             HHHHHHHHTTSCTTCCEEECTTSC-GGGS----CHHHHH----HHHHTSCTTCCEEECTTS-CGGGSCHHHHHHHHHTSC
T ss_pred             HHHHHHHHHhCCCceeEEEccCCc-CCHH----HHHHHH----HHHhcCCccccEeeecCC-CCchhhHHHHHHHHHhCC
Confidence            2      223 3588888888763 2211    000000    1223344 8999999887 3444322     11234 


Q ss_pred             CCccEEeEcCcc
Q 026434          174 PKLKKIKVRGCR  185 (238)
Q Consensus       174 ~~L~~L~i~~C~  185 (238)
                      ++|+.|++++|.
T Consensus       196 ~~L~~L~Ls~N~  207 (362)
T 3goz_A          196 ASVTSLDLSANL  207 (362)
T ss_dssp             TTCCEEECTTSC
T ss_pred             CCCCEEECCCCC
Confidence            489999999885

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=95.99  E-value=0.00021  Score=61.65  Aligned_cols=136  Identities=11%  Similarity=0.061  Sum_probs=74.3

Q ss_pred             cceeEEEEeecCCCCC-cccch-hhcccCCeEEEeecCCceEEecccCccCcccc-cCCCCccEEEEecCCCCCcCc---
Q 026434           34 SITQSVGVYQCRSPPF-NVFHL-AYMENLQELELEYCNLEEMKIDSTDEVKKLFQ-SGFRSLNTVHVFYCQKAKDLT---  107 (238)
Q Consensus        34 ~~L~~L~l~~c~~l~~-~~~~l-~~l~~L~~L~i~~c~l~~i~~~~~~~~~~~~~-~~l~~L~~L~i~~C~~L~~l~---  107 (238)
                      .+|+.|++.+|. +.. .+..+ ..+++|+.|++++|.+.........    ... ...++|+.|++++| .+.+..   
T Consensus       101 ~~L~~L~Ls~n~-l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~----~~L~~~~~~L~~L~Ls~n-~l~~~~~~~  174 (372)
T 3un9_A          101 HALDEVNLASCQ-LDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLR----DLLLHDQCQITTLRLSNN-PLTAAGVAV  174 (372)
T ss_dssp             SCEEEEECTTCC-CCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHH----HHHHSTTCCCCEEECCSS-CCHHHHHHH
T ss_pred             CCceEEEecCCC-CCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHH----HHHHhcCCccceeeCCCC-CCChHHHHH
Confidence            467777777764 222 12222 3456778888887764322111000    000 13567888888888 454421   


Q ss_pred             ---ccccCCCccEEEEecccccceecccccccccccccccccccccccceeeccccccccccCC-----CCCCCCCccEE
Q 026434          108 ---WLVFVQNLKKLRIEFCDDVEEIIGVDKLRDISEIIGSEHNFFAQLEYLTISWGINLKGVYP-----NPLPFPKLKKI  179 (238)
Q Consensus       108 ---~~~~l~~L~~L~i~~C~~l~~l~~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~-----~~~~~~~L~~L  179 (238)
                         .+...++|++|++++|. +...    ......    ..+...++|+.|+|+++. +.....     .....++|+.|
T Consensus       175 l~~~L~~~~~L~~L~Ls~N~-l~~~----g~~~L~----~~L~~~~~L~~L~Ls~N~-i~~~g~~~l~~~L~~~~~L~~L  244 (372)
T 3un9_A          175 LMEGLAGNTSVTHLSLLHTG-LGDE----GLELLA----AQLDRNRQLQELNVAYNG-AGDTAALALARAAREHPSLELL  244 (372)
T ss_dssp             HHHHHHTCSSCCEEECTTSS-CHHH----HHHHHH----HHGGGCSCCCEEECCSSC-CCHHHHHHHHHHHHHCSSCCEE
T ss_pred             HHHHHhcCCCcCEEeCCCCC-CCcH----HHHHHH----HHHhcCCCcCeEECCCCC-CCHHHHHHHHHHHHhCCCCCEE
Confidence               23467888888888774 3221    000000    233445789999998763 332211     11235889999


Q ss_pred             eEcCcc
Q 026434          180 KVRGCR  185 (238)
Q Consensus       180 ~i~~C~  185 (238)
                      ++++++
T Consensus       245 ~Ls~N~  250 (372)
T 3un9_A          245 HLYFNE  250 (372)
T ss_dssp             ECTTSS
T ss_pred             eccCCC
Confidence            999885

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=95.47  E-value=0.00035  Score=60.25  Aligned_cols=133  Identities=12%  Similarity=0.031  Sum_probs=80.6

Q ss_pred             hcceeEEEEeecCCCCC-cccchhh-----cccCCeEEEeecCCceEEecccCccCcccccCCCCccEEEEecCCCCCcC
Q 026434           33 VSITQSVGVYQCRSPPF-NVFHLAY-----MENLQELELEYCNLEEMKIDSTDEVKKLFQSGFRSLNTVHVFYCQKAKDL  106 (238)
Q Consensus        33 ~~~L~~L~l~~c~~l~~-~~~~l~~-----l~~L~~L~i~~c~l~~i~~~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l  106 (238)
                      .++++.|++.+|. +.. ....+..     .++|+.|++++|.+........       ...+++|+.|++++| ++.+.
T Consensus        71 ~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l-------~~~L~~L~~L~Ls~n-~l~~~  141 (372)
T 3un9_A           71 LSSLRQLNLAGVR-MTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTL-------LPVFLRARKLGLQLN-SLGPE  141 (372)
T ss_dssp             HTTCCEEECTTSC-CCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHT-------HHHHHTEEEEECCSS-CCCHH
T ss_pred             HhhCCEEEecCCC-CCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHH-------HHHHHhccHhhcCCC-CCCHH
Confidence            4678999998885 332 2222332     2689999999988432111110       123568999999998 56553


Q ss_pred             c--c----c-ccCCCccEEEEecccccceecccccccccccccccccccccccceeeccccccccc-----cCCCCCCCC
Q 026434          107 T--W----L-VFVQNLKKLRIEFCDDVEEIIGVDKLRDISEIIGSEHNFFAQLEYLTISWGINLKG-----VYPNPLPFP  174 (238)
Q Consensus       107 ~--~----~-~~l~~L~~L~i~~C~~l~~l~~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~-----i~~~~~~~~  174 (238)
                      .  .    + ...++|++|++++|. +...    ......    ..+...++|++|+|+++. +..     +.......+
T Consensus       142 ~~~~L~~~L~~~~~~L~~L~Ls~n~-l~~~----~~~~l~----~~L~~~~~L~~L~Ls~N~-l~~~g~~~L~~~L~~~~  211 (372)
T 3un9_A          142 ACKDLRDLLLHDQCQITTLRLSNNP-LTAA----GVAVLM----EGLAGNTSVTHLSLLHTG-LGDEGLELLAAQLDRNR  211 (372)
T ss_dssp             HHHHHHHHHHSTTCCCCEEECCSSC-CHHH----HHHHHH----HHHHTCSSCCEEECTTSS-CHHHHHHHHHHHGGGCS
T ss_pred             HHHHHHHHHHhcCCccceeeCCCCC-CChH----HHHHHH----HHHhcCCCcCEEeCCCCC-CCcHHHHHHHHHHhcCC
Confidence            2  1    1 246889999999984 3221    000000    223457899999998764 332     121223457


Q ss_pred             CccEEeEcCc
Q 026434          175 KLKKIKVRGC  184 (238)
Q Consensus       175 ~L~~L~i~~C  184 (238)
                      +|+.|++++|
T Consensus       212 ~L~~L~Ls~N  221 (372)
T 3un9_A          212 QLQELNVAYN  221 (372)
T ss_dssp             CCCEEECCSS
T ss_pred             CcCeEECCCC
Confidence            8999999987

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=94.97  E-value=0.011  Score=48.61  Aligned_cols=13  Identities=23%  Similarity=0.302  Sum_probs=6.2

Q ss_pred             cccCCeEEEeecC
Q 026434           57 MENLQELELEYCN   69 (238)
Q Consensus        57 l~~L~~L~i~~c~   69 (238)
                      +++|+.|+++++.
T Consensus       169 l~~L~~L~Ls~N~  181 (267)
T 3rw6_A          169 IPELLSLNLSNNR  181 (267)
T ss_dssp             CTTCCEEECTTSC
T ss_pred             CCCCCEEECCCCC
Confidence            3444555544444

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=94.72  E-value=0.21  Score=43.21  Aligned_cols=57  Identities=16%  Similarity=0.264  Sum_probs=26.8

Q ss_pred             hhhcccCCeEEEeecCCceEEecccCccCcccccCCCCccEEEEecCCCCCcCc--ccccCCCccEEEEe
Q 026434           54 LAYMENLQELELEYCNLEEMKIDSTDEVKKLFQSGFRSLNTVHVFYCQKAKDLT--WLVFVQNLKKLRIE  121 (238)
Q Consensus        54 l~~l~~L~~L~i~~c~l~~i~~~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~--~~~~l~~L~~L~i~  121 (238)
                      +.++++|+.+.+.++.++.+....         ....+|+.+.+..  +++.+.  ....+++|+.+.+.
T Consensus       176 F~~c~~L~~l~l~~n~l~~I~~~a---------F~~~~L~~l~lp~--~l~~I~~~aF~~~~~L~~l~l~  234 (401)
T 4fdw_A          176 FYYCYNLKKADLSKTKITKLPAST---------FVYAGIEEVLLPV--TLKEIGSQAFLKTSQLKTIEIP  234 (401)
T ss_dssp             TTTCTTCCEEECTTSCCSEECTTT---------TTTCCCSEEECCT--TCCEECTTTTTTCTTCCCEECC
T ss_pred             hhCcccCCeeecCCCcceEechhh---------EeecccCEEEeCC--chheehhhHhhCCCCCCEEecC
Confidence            455566666666554444442111         1134566665542  344432  12345556655554

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=92.86  E-value=3  Score=35.79  Aligned_cols=60  Identities=17%  Similarity=0.082  Sum_probs=31.1

Q ss_pred             cccccccceeeccccccccccCCCCC-CCCCccEEeEcCccCCCCCCCCCCCCC-CcceEEEchhh
Q 026434          146 HNFFAQLEYLTISWGINLKGVYPNPL-PFPKLKKIKVRGCRHLKKLPLNSSSAK-ERRVVIEGSKK  209 (238)
Q Consensus       146 ~~~~p~L~~L~L~~~~~L~~i~~~~~-~~~~L~~L~i~~C~~L~~lp~~~~~~~-~~L~~~~~~~~  209 (238)
                      ...+++|+.+.|.+  +++.|..... .+ +|+.+.+.+. .+..++...-... ..+..+.-+..
T Consensus       319 F~~c~~L~~l~lp~--~l~~I~~~aF~~~-~L~~l~l~~n-~~~~l~~~~F~~~~~~l~~l~vp~~  380 (401)
T 4fdw_A          319 LGGNRKVTQLTIPA--NVTQINFSAFNNT-GIKEVKVEGT-TPPQVFEKVWYGFPDDITVIRVPAE  380 (401)
T ss_dssp             TTTCCSCCEEEECT--TCCEECTTSSSSS-CCCEEEECCS-SCCBCCCSSCCCSCTTCCEEEECGG
T ss_pred             hcCCCCccEEEECc--cccEEcHHhCCCC-CCCEEEEcCC-CCcccccccccCCCCCccEEEeCHH
Confidence            34456777777743  4666655432 34 7888888764 3344443322222 34545543333

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=92.60  E-value=0.099  Score=42.76  Aligned_cols=60  Identities=15%  Similarity=0.067  Sum_probs=36.7

Q ss_pred             CCCCccEEEEecCCCCCcCccc----ccCCCccEEEEecccccceecccccccccccccccccccccccceeeccccc
Q 026434           88 GFRSLNTVHVFYCQKAKDLTWL----VFVQNLKKLRIEFCDDVEEIIGVDKLRDISEIIGSEHNFFAQLEYLTISWGI  161 (238)
Q Consensus        88 ~l~~L~~L~i~~C~~L~~l~~~----~~l~~L~~L~i~~C~~l~~l~~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~  161 (238)
                      .+++|+.|++++. ++..+..+    ..+++|+.|++++. ++..+-.      .     ..+..+ +|++|.|.+.|
T Consensus       168 ~l~~L~~L~Ls~N-~l~~l~~l~~~~~~l~~L~~L~Ls~N-~i~~~~~------l-----~~l~~l-~L~~L~L~~Np  231 (267)
T 3rw6_A          168 NIPELLSLNLSNN-RLYRLDDMSSIVQKAPNLKILNLSGN-ELKSERE------L-----DKIKGL-KLEELWLDGNS  231 (267)
T ss_dssp             HCTTCCEEECTTS-CCCCCGGGTTHHHHSTTCCEEECTTS-CCCSGGG------G-----GGGTTS-CCSEEECTTST
T ss_pred             hCCCCCEEECCCC-CCCCCccchhHHhhCCCCCEEECCCC-ccCCchh------h-----hhcccC-CcceEEccCCc
Confidence            4778888888775 57766533    36888888888764 3333200      0     122223 77888877665

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=90.62  E-value=0.029  Score=43.04  Aligned_cols=113  Identities=11%  Similarity=-0.015  Sum_probs=61.9

Q ss_pred             cceeEEEEeecCCCCC-ccc----chhhcccCCeEEEeecCCceEEecccCccCcccccCCCCccEEEEecCCCCCcC--
Q 026434           34 SITQSVGVYQCRSPPF-NVF----HLAYMENLQELELEYCNLEEMKIDSTDEVKKLFQSGFRSLNTVHVFYCQKAKDL--  106 (238)
Q Consensus        34 ~~L~~L~l~~c~~l~~-~~~----~l~~l~~L~~L~i~~c~l~~i~~~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l--  106 (238)
                      +.|++|++.+|..+.. ...    .+...++|++|++++|.+..--.....    ......++|+.|++++| .+.+-  
T Consensus        36 ~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~----~~L~~n~~L~~L~L~~N-~i~~~g~  110 (185)
T 1io0_A           36 PDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALA----EMLKVNNTLKSLNVESN-FISGSGI  110 (185)
T ss_dssp             TTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHH----HHHHHCSSCCEEECCSS-CCCHHHH
T ss_pred             CCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHH----HHHHhCCCcCEEECcCC-cCCHHHH
Confidence            5788898888744443 221    244567888898888873321000000    01123467888888887 45552  


Q ss_pred             ----cccccCCCccEEEE--ecccccceecccccccccccccccccccccccceeecccc
Q 026434          107 ----TWLVFVQNLKKLRI--EFCDDVEEIIGVDKLRDISEIIGSEHNFFAQLEYLTISWG  160 (238)
Q Consensus       107 ----~~~~~l~~L~~L~i--~~C~~l~~l~~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~  160 (238)
                          ..+...++|++|++  .++ .+..    .......    ..+...+.|++|+|..+
T Consensus       111 ~~l~~~L~~n~~L~~L~L~~~~N-~i~~----~g~~~l~----~~L~~n~~L~~L~L~~n  161 (185)
T 1io0_A          111 LALVEALQSNTSLIELRIDNQSQ-PLGN----NVEMEIA----NMLEKNTTLLKFGYHFT  161 (185)
T ss_dssp             HHHHHGGGGCSSCCEEECCCCSS-CCCH----HHHHHHH----HHHHHCSSCCEEECCCS
T ss_pred             HHHHHHHHhCCCceEEEecCCCC-CCCH----HHHHHHH----HHHHhCCCcCEEeccCC
Confidence                13456678888888  444 2221    1100000    23334567888888755

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=90.45  E-value=0.023  Score=43.61  Aligned_cols=117  Identities=14%  Similarity=0.030  Sum_probs=64.0

Q ss_pred             hhhcccCCeEEEeec-CCceEEecccCccCcccccCCCCccEEEEecCCCCCcC------cccccCCCccEEEEeccccc
Q 026434           54 LAYMENLQELELEYC-NLEEMKIDSTDEVKKLFQSGFRSLNTVHVFYCQKAKDL------TWLVFVQNLKKLRIEFCDDV  126 (238)
Q Consensus        54 l~~l~~L~~L~i~~c-~l~~i~~~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l------~~~~~l~~L~~L~i~~C~~l  126 (238)
                      +...++|++|++++| .+..-.+...    .......++|+.|++++| .+.+-      ..+...++|++|++++|. +
T Consensus        32 l~~~~~L~~L~L~~n~~i~~~g~~~l----~~~L~~~~~L~~L~Ls~n-~i~~~g~~~l~~~L~~n~~L~~L~L~~N~-i  105 (185)
T 1io0_A           32 QNNDPDLEEVNLNNIMNIPVPTLKAC----AEALKTNTYVKKFSIVGT-RSNDPVAFALAEMLKVNNTLKSLNVESNF-I  105 (185)
T ss_dssp             HTTCTTCCEEECTTCTTCCHHHHHHH----HHHHTTCCSCCEEECTTS-CCCHHHHHHHHHHHHHCSSCCEEECCSSC-C
T ss_pred             HhcCCCCCEEEecCCCCCCHHHHHHH----HHHHHhCCCcCEEECcCC-CCChHHHHHHHHHHHhCCCcCEEECcCCc-C
Confidence            456688999999988 5432110000    011223578899999887 45542      123456789999998873 2


Q ss_pred             ceecccccccccccccccccccccccceeec--cccccccc-----cCCCCCCCCCccEEeEcCcc
Q 026434          127 EEIIGVDKLRDISEIIGSEHNFFAQLEYLTI--SWGINLKG-----VYPNPLPFPKLKKIKVRGCR  185 (238)
Q Consensus       127 ~~l~~~~~~~~~~~~~~~~~~~~p~L~~L~L--~~~~~L~~-----i~~~~~~~~~L~~L~i~~C~  185 (238)
                      .    ........    ..+...++|++|+|  .+. .+..     +.......++|+.|++.+|.
T Consensus       106 ~----~~g~~~l~----~~L~~n~~L~~L~L~~~~N-~i~~~g~~~l~~~L~~n~~L~~L~L~~n~  162 (185)
T 1io0_A          106 S----GSGILALV----EALQSNTSLIELRIDNQSQ-PLGNNVEMEIANMLEKNTTLLKFGYHFTQ  162 (185)
T ss_dssp             C----HHHHHHHH----HGGGGCSSCCEEECCCCSS-CCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred             C----HHHHHHHH----HHHHhCCCceEEEecCCCC-CCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence            1    11100000    23344568899998  433 3332     21111234778888887663

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	238
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.11
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.09
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.07
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.06
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.05
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.03
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.0
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	98.87
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	98.82
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	98.75
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	98.67
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	98.57
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	98.55
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	98.53
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	98.53
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	98.48
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	98.46
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	98.39
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	98.37
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	98.27
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	98.26
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.21
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	98.17
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	98.14
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	98.05
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.04
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	98.01
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	97.83
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	97.82
d2ifga3	156	High affinity nerve growth factor receptor, N-term	97.49
d2ifga3	156	High affinity nerve growth factor receptor, N-term	97.23
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	97.11
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	96.02
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	95.9
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	94.96
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	93.47
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	93.05
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	91.85
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	86.88

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.11  E-value=6.6e-12  Score=103.02  Aligned_cols=161  Identities=16%  Similarity=0.149  Sum_probs=82.5

Q ss_pred             ccCCCcceeEEee--ehHHHHhhhcCchhhcceeEEEEeecCCCCC-cccchhhcccCCeEEEeecC-CceEEecccCcc
Q 026434            6 GLKHLKVLSWSFG--SSLAVQKFLKYPKLVSITQSVGVYQCRSPPF-NVFHLAYMENLQELELEYCN-LEEMKIDSTDEV   81 (238)
Q Consensus         6 ~L~~L~~L~i~~~--~~~~l~~l~~~~~l~~~L~~L~l~~c~~l~~-~~~~l~~l~~L~~L~i~~c~-l~~i~~~~~~~~   81 (238)
                      ...+|+.|+++.+  +...+..++...   ++|++|.+.+|. +.. .+..+.++++|++|++++|. +.+..+...   
T Consensus        44 ~~~~L~~LdLs~~~i~~~~l~~l~~~c---~~L~~L~L~~~~-l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l---  116 (284)
T d2astb2          44 SPFRVQHMDLSNSVIEVSTLHGILSQC---SKLQNLSLEGLR-LSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTL---  116 (284)
T ss_dssp             CCBCCCEEECTTCEECHHHHHHHHTTB---CCCSEEECTTCB-CCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHH---
T ss_pred             cCCCCCEEECCCCccCHHHHHHHHHhC---CCcccccccccC-CCcHHHHHHhcCCCCcCccccccccccccccchh---
Confidence            3456777776432  234455554443   478888888773 333 34456667788888888877 653211100   


Q ss_pred             CcccccCCCCccEEEEecCCCCCcCc---cc-ccCCCccEEEEecccc-cceecccccccccccccccccccccccceee
Q 026434           82 KKLFQSGFRSLNTVHVFYCQKAKDLT---WL-VFVQNLKKLRIEFCDD-VEEIIGVDKLRDISEIIGSEHNFFAQLEYLT  156 (238)
Q Consensus        82 ~~~~~~~l~~L~~L~i~~C~~L~~l~---~~-~~l~~L~~L~i~~C~~-l~~l~~~~~~~~~~~~~~~~~~~~p~L~~L~  156 (238)
                          ...+++|++|++++|.++++-.   .+ ...++|+.|.+.+|.. +....     ..      .-...+|+|++|+
T Consensus       117 ----~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~-----l~------~l~~~~~~L~~L~  181 (284)
T d2astb2         117 ----LSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSD-----LS------TLVRRCPNLVHLD  181 (284)
T ss_dssp             ----HHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHH-----HH------HHHHHCTTCSEEE
T ss_pred             ----hHHHHhccccccccccccccccchhhhcccccccchhhhccccccccccc-----cc------ccccccccccccc
Confidence                1236677777777777665421   11 2346677777766532 21100     00      1112345555555


Q ss_pred             ccccccccccCC-CCCCCCCccEEeEcCccCCC
Q 026434          157 ISWGINLKGVYP-NPLPFPKLKKIKVRGCRHLK  188 (238)
Q Consensus       157 L~~~~~L~~i~~-~~~~~~~L~~L~i~~C~~L~  188 (238)
                      +.+|+.+++-.. ....+++|++|++++|.+++
T Consensus       182 L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~  214 (284)
T d2astb2         182 LSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDII  214 (284)
T ss_dssp             CTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCC
T ss_pred             cccccCCCchhhhhhcccCcCCEEECCCCCCCC
Confidence            555555442211 12234555555555555544

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.09  E-value=1e-11  Score=101.81  Aligned_cols=160  Identities=17%  Similarity=0.121  Sum_probs=111.3

Q ss_pred             ccccCCCcceeEEeee--hHHHHhhhcCchhhcceeEEEEeecCCCCC-cccc-hhhcccCCeEEEeecC-CceEEeccc
Q 026434            4 LLGLKHLKVLSWSFGS--SLAVQKFLKYPKLVSITQSVGVYQCRSPPF-NVFH-LAYMENLQELELEYCN-LEEMKIDST   78 (238)
Q Consensus         4 L~~L~~L~~L~i~~~~--~~~l~~l~~~~~l~~~L~~L~l~~c~~l~~-~~~~-l~~l~~L~~L~i~~c~-l~~i~~~~~   78 (238)
                      +.++.+|+.|++..+.  ...+..+...    ++|++|++.+|.++.. .+.. ..++++|++|++++|. +.+-.+...
T Consensus        67 ~~~c~~L~~L~L~~~~l~~~~~~~l~~~----~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~  142 (284)
T d2astb2          67 LSQCSKLQNLSLEGLRLSDPIVNTLAKN----SNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVA  142 (284)
T ss_dssp             HTTBCCCSEEECTTCBCCHHHHHHHTTC----TTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHH
T ss_pred             HHhCCCcccccccccCCCcHHHHHHhcC----CCCcCccccccccccccccchhhHHHHhccccccccccccccccchhh
Confidence            4567889999876443  3445555432    5899999999988775 3333 3578999999999998 653211100


Q ss_pred             CccCcccccCCCCccEEEEecCC-CCCcC--c-ccccCCCccEEEEecccccceecccccccccccccccccccccccce
Q 026434           79 DEVKKLFQSGFRSLNTVHVFYCQ-KAKDL--T-WLVFVQNLKKLRIEFCDDVEEIIGVDKLRDISEIIGSEHNFFAQLEY  154 (238)
Q Consensus        79 ~~~~~~~~~~l~~L~~L~i~~C~-~L~~l--~-~~~~l~~L~~L~i~~C~~l~~l~~~~~~~~~~~~~~~~~~~~p~L~~  154 (238)
                            .....++|+.|++.+|. .+.+-  . ....+|+|++|++++|..+.+-..            ..+..+|+|++
T Consensus       143 ------~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~------------~~l~~~~~L~~  204 (284)
T d2astb2         143 ------VAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCF------------QEFFQLNYLQH  204 (284)
T ss_dssp             ------HHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGG------------GGGGGCTTCCE
T ss_pred             ------hcccccccchhhhcccccccccccccccccccccccccccccccCCCchhh------------hhhcccCcCCE
Confidence                  01235789999999984 35442  2 235689999999999987653211            34556899999


Q ss_pred             eeccccccccccCC-CCCCCCCccEEeEcCcc
Q 026434          155 LTISWGINLKGVYP-NPLPFPKLKKIKVRGCR  185 (238)
Q Consensus       155 L~L~~~~~L~~i~~-~~~~~~~L~~L~i~~C~  185 (238)
                      |++.+|.++++-.. ....+|+|+.|++.+|-
T Consensus       205 L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~~  236 (284)
T d2astb2         205 LSLSRCYDIIPETLLELGEIPTLKTLQVFGIV  236 (284)
T ss_dssp             EECTTCTTCCGGGGGGGGGCTTCCEEECTTSS
T ss_pred             EECCCCCCCChHHHHHHhcCCCCCEEeeeCCC
Confidence            99999988865332 23458999999999983

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.07  E-value=2.1e-10  Score=89.62  Aligned_cols=150  Identities=15%  Similarity=0.207  Sum_probs=102.7

Q ss_pred             cCCCcceeEEeeehHHHHhhhcCchhhcceeEEEEeecCCCCCcccchhhcccCCeEEEeecCCceEEecccCccCcccc
Q 026434            7 LKHLKVLSWSFGSSLAVQKFLKYPKLVSITQSVGVYQCRSPPFNVFHLAYMENLQELELEYCNLEEMKIDSTDEVKKLFQ   86 (238)
Q Consensus         7 L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~c~~l~~~~~~l~~l~~L~~L~i~~c~l~~i~~~~~~~~~~~~~   86 (238)
                      |..|+.|++.......+..+    ...++|+.|++.++. +. .+..+.++++|+.|++++|.++.+          +..
T Consensus        45 L~~L~~L~l~~~~i~~l~~l----~~l~~L~~L~L~~n~-i~-~l~~~~~l~~L~~L~l~~n~i~~l----------~~l  108 (210)
T d1h6ta2          45 LNSIDQIIANNSDIKSVQGI----QYLPNVTKLFLNGNK-LT-DIKPLANLKNLGWLFLDENKVKDL----------SSL  108 (210)
T ss_dssp             HHTCCEEECTTSCCCCCTTG----GGCTTCCEEECCSSC-CC-CCGGGTTCTTCCEEECCSSCCCCG----------GGG
T ss_pred             hcCccEEECcCCCCCCchhH----hhCCCCCEEeCCCcc-cc-CccccccCcccccccccccccccc----------ccc
Confidence            45566666543222222221    234689999999874 33 355678899999999999886544          223


Q ss_pred             cCCCCccEEEEecCCCCCcCcccccCCCccEEEEecccccceecccccccccccccccccccccccceeecccccccccc
Q 026434           87 SGFRSLNTVHVFYCQKAKDLTWLVFVQNLKKLRIEFCDDVEEIIGVDKLRDISEIIGSEHNFFAQLEYLTISWGINLKGV  166 (238)
Q Consensus        87 ~~l~~L~~L~i~~C~~L~~l~~~~~l~~L~~L~i~~C~~l~~l~~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i  166 (238)
                      ..+++|+.|++.++. +..++.+..+++|+.+.+.++. +...              .....+++|+.+.+.++ .++++
T Consensus       109 ~~l~~L~~L~l~~~~-~~~~~~l~~l~~l~~l~~~~n~-l~~~--------------~~~~~l~~L~~l~l~~n-~l~~i  171 (210)
T d1h6ta2         109 KDLKKLKSLSLEHNG-ISDINGLVHLPQLESLYLGNNK-ITDI--------------TVLSRLTKLDTLSLEDN-QISDI  171 (210)
T ss_dssp             TTCTTCCEEECTTSC-CCCCGGGGGCTTCCEEECCSSC-CCCC--------------GGGGGCTTCSEEECCSS-CCCCC
T ss_pred             ccccccccccccccc-cccccccccccccccccccccc-cccc--------------ccccccccccccccccc-ccccc
Confidence            568899999999884 5677778888999999887663 3322              23345788888888766 45554


Q ss_pred             CCCCCCCCCccEEeEcCccCCCCCC
Q 026434          167 YPNPLPFPKLKKIKVRGCRHLKKLP  191 (238)
Q Consensus       167 ~~~~~~~~~L~~L~i~~C~~L~~lp  191 (238)
                      .. ...+++|++|+++++ +++.+|
T Consensus       172 ~~-l~~l~~L~~L~Ls~N-~i~~l~  194 (210)
T d1h6ta2         172 VP-LAGLTKLQNLYLSKN-HISDLR  194 (210)
T ss_dssp             GG-GTTCTTCCEEECCSS-CCCBCG
T ss_pred             cc-ccCCCCCCEEECCCC-CCCCCh
Confidence            32 345788999999888 578877

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.06  E-value=2e-10  Score=88.99  Aligned_cols=127  Identities=13%  Similarity=0.197  Sum_probs=64.8

Q ss_pred             cceeEEEEeecCCCCCcccchhhcccCCeEEEeecCCceEEecccCccCcccccCCCCccEEEEecCCCCCcCcccccCC
Q 026434           34 SITQSVGVYQCRSPPFNVFHLAYMENLQELELEYCNLEEMKIDSTDEVKKLFQSGFRSLNTVHVFYCQKAKDLTWLVFVQ  113 (238)
Q Consensus        34 ~~L~~L~l~~c~~l~~~~~~l~~l~~L~~L~i~~c~l~~i~~~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~l~  113 (238)
                      ++|+.|++.++ .+.. +..++++++|++|++.+|....+          +....+++|+.|++.+|. ...+.++..++
T Consensus        62 ~nL~~L~Ls~N-~l~~-~~~l~~l~~L~~L~l~~n~~~~~----------~~l~~l~~L~~L~l~~~~-~~~~~~~~~l~  128 (199)
T d2omxa2          62 NNLTQINFSNN-QLTD-ITPLKNLTKLVDILMNNNQIADI----------TPLANLTNLTGLTLFNNQ-ITDIDPLKNLT  128 (199)
T ss_dssp             TTCCEEECCSS-CCCC-CGGGTTCTTCCEEECCSSCCCCC----------GGGTTCTTCSEEECCSSC-CCCCGGGTTCT
T ss_pred             CCcCcCccccc-cccC-cccccCCcccccccccccccccc----------cccccccccccccccccc-cccccccchhh
Confidence            34555555544 2221 23344455555555554442222          112335555555555442 33334445555


Q ss_pred             CccEEEEecccccceecccccccccccccccccccccccceeeccccccccccCCCCCCCCCccEEeEcCccCCCCCC
Q 026434          114 NLKKLRIEFCDDVEEIIGVDKLRDISEIIGSEHNFFAQLEYLTISWGINLKGVYPNPLPFPKLKKIKVRGCRHLKKLP  191 (238)
Q Consensus       114 ~L~~L~i~~C~~l~~l~~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~~~~~~~~L~~L~i~~C~~L~~lp  191 (238)
                      +|+.|++.++. +..+              ..+..+++|+.|.+.++ +++++. ....+++|+.|+++++ +++.+|
T Consensus       129 ~L~~L~l~~n~-l~~~--------------~~l~~~~~L~~L~l~~n-~l~~l~-~l~~l~~L~~L~ls~N-~i~~i~  188 (199)
T d2omxa2         129 NLNRLELSSNT-ISDI--------------SALSGLTSLQQLNFSSN-QVTDLK-PLANLTTLERLDISSN-KVSDIS  188 (199)
T ss_dssp             TCSEEECCSSC-CCCC--------------GGGTTCTTCSEEECCSS-CCCCCG-GGTTCTTCCEEECCSS-CCCCCG
T ss_pred             hhHHhhhhhhh-hccc--------------ccccccccccccccccc-cccCCc-cccCCCCCCEEECCCC-CCCCCc
Confidence            55655555442 2221              23445677777777664 344443 2345788888888887 477765

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.05  E-value=3e-10  Score=88.00  Aligned_cols=144  Identities=15%  Similarity=0.163  Sum_probs=102.8

Q ss_pred             ccccccCCCcceeEEeeehHHHHhhhcCchhhcceeEEEEeecCCCCCcccchhhcccCCeEEEeecCCceEEecccCcc
Q 026434            2 KELLGLKHLKVLSWSFGSSLAVQKFLKYPKLVSITQSVGVYQCRSPPFNVFHLAYMENLQELELEYCNLEEMKIDSTDEV   81 (238)
Q Consensus         2 ~eL~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~c~~l~~~~~~l~~l~~L~~L~i~~c~l~~i~~~~~~~~   81 (238)
                      +.++.+++|+.|++.......+..+.    -.++|+.|++.++.. . .++.+.++++|+.|++.+|....+        
T Consensus        56 ~~l~~l~nL~~L~Ls~N~l~~~~~l~----~l~~L~~L~l~~n~~-~-~~~~l~~l~~L~~L~l~~~~~~~~--------  121 (199)
T d2omxa2          56 DGVEYLNNLTQINFSNNQLTDITPLK----NLTKLVDILMNNNQI-A-DITPLANLTNLTGLTLFNNQITDI--------  121 (199)
T ss_dssp             TTGGGCTTCCEEECCSSCCCCCGGGT----TCTTCCEEECCSSCC-C-CCGGGTTCTTCSEEECCSSCCCCC--------
T ss_pred             cccccCCCcCcCccccccccCccccc----CCccccccccccccc-c-cccccccccccccccccccccccc--------
Confidence            45677888888887643322222222    235799999988753 2 356688899999999998883322        


Q ss_pred             CcccccCCCCccEEEEecCCCCCcCcccccCCCccEEEEecccccceecccccccccccccccccccccccceeeccccc
Q 026434           82 KKLFQSGFRSLNTVHVFYCQKAKDLTWLVFVQNLKKLRIEFCDDVEEIIGVDKLRDISEIIGSEHNFFAQLEYLTISWGI  161 (238)
Q Consensus        82 ~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~l~~L~~L~i~~C~~l~~l~~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~  161 (238)
                        .....+++|+.|+++++ +++.++.+..+++|+.|.+.++ +++.+              ..+..+++|++|+++++ 
T Consensus       122 --~~~~~l~~L~~L~l~~n-~l~~~~~l~~~~~L~~L~l~~n-~l~~l--------------~~l~~l~~L~~L~ls~N-  182 (199)
T d2omxa2         122 --DPLKNLTNLNRLELSSN-TISDISALSGLTSLQQLNFSSN-QVTDL--------------KPLANLTTLERLDISSN-  182 (199)
T ss_dssp             --GGGTTCTTCSEEECCSS-CCCCCGGGTTCTTCSEEECCSS-CCCCC--------------GGGTTCTTCCEEECCSS-
T ss_pred             --cccchhhhhHHhhhhhh-hhcccccccccccccccccccc-cccCC--------------ccccCCCCCCEEECCCC-
Confidence              12346899999999987 5888888889999999999887 45544              34567899999999987 


Q ss_pred             cccccCCCCCCCCCccEE
Q 026434          162 NLKGVYPNPLPFPKLKKI  179 (238)
Q Consensus       162 ~L~~i~~~~~~~~~L~~L  179 (238)
                      +++++.. ...+++|++|
T Consensus       183 ~i~~i~~-l~~L~~L~~L  199 (199)
T d2omxa2         183 KVSDISV-LAKLTNLESL  199 (199)
T ss_dssp             CCCCCGG-GGGCTTCSEE
T ss_pred             CCCCCcc-ccCCCCCCcC
Confidence            4777642 3456666654

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.03  E-value=7e-10  Score=87.38  Aligned_cols=148  Identities=13%  Similarity=0.184  Sum_probs=84.3

Q ss_pred             cceeEEEEeecCCCCCcccchhhcccCCeEEEeecCCceEEe-ccc-----------CccCcccccCCCCccEEEEecCC
Q 026434           34 SITQSVGVYQCRSPPFNVFHLAYMENLQELELEYCNLEEMKI-DST-----------DEVKKLFQSGFRSLNTVHVFYCQ  101 (238)
Q Consensus        34 ~~L~~L~l~~c~~l~~~~~~l~~l~~L~~L~i~~c~l~~i~~-~~~-----------~~~~~~~~~~l~~L~~L~i~~C~  101 (238)
                      ++|+.|++.++. +. .+..+.++++|+.+.+.+|.++.+.. ...           ...........+.++.+.+.++ 
T Consensus        63 ~~L~~L~ls~n~-i~-~~~~l~~l~~l~~l~~~~n~~~~i~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~l~~~~~-  139 (227)
T d1h6ua2          63 NNLIGLELKDNQ-IT-DLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLN-  139 (227)
T ss_dssp             TTCCEEECCSSC-CC-CCGGGTTCCSCCEEECCSCCCSCCGGGTTCTTCCEEECTTSCCCCCGGGTTCTTCCEEECCSS-
T ss_pred             CCCcEeecCCce-ee-ccccccccccccccccccccccccccccccccccccccccccccccchhccccchhhhhchhh-
Confidence            566666666653 22 23345566666666666554332210 000           0000111233455666666554 


Q ss_pred             CCCcCcccccCCCccEEEEecccccceecccccccccccccccccccccccceeeccccccccccCCCCCCCCCccEEeE
Q 026434          102 KAKDLTWLVFVQNLKKLRIEFCDDVEEIIGVDKLRDISEIIGSEHNFFAQLEYLTISWGINLKGVYPNPLPFPKLKKIKV  181 (238)
Q Consensus       102 ~L~~l~~~~~l~~L~~L~i~~C~~l~~l~~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~~~~~~~~L~~L~i  181 (238)
                      .+.....+..+++|++|.+.+|. +...              ..+..+++|++|+++++ +++++.. ...+++|+.|++
T Consensus       140 ~~~~~~~~~~~~~L~~L~l~~n~-~~~~--------------~~l~~l~~L~~L~Ls~n-~l~~l~~-l~~l~~L~~L~L  202 (227)
T d1h6ua2         140 QITNISPLAGLTNLQYLSIGNAQ-VSDL--------------TPLANLSKLTTLKADDN-KISDISP-LASLPNLIEVHL  202 (227)
T ss_dssp             CCCCCGGGGGCTTCCEEECCSSC-CCCC--------------GGGTTCTTCCEEECCSS-CCCCCGG-GGGCTTCCEEEC
T ss_pred             hhchhhhhccccccccccccccc-cccc--------------hhhcccccceecccCCC-ccCCChh-hcCCCCCCEEEC
Confidence            34444456678889998887763 2222              23456889999999876 6777642 446789999999


Q ss_pred             cCccCCCCCCCCCCCCCCcceEE
Q 026434          182 RGCRHLKKLPLNSSSAKERRVVI  204 (238)
Q Consensus       182 ~~C~~L~~lp~~~~~~~~~L~~~  204 (238)
                      ++| +++.+|.-.  ..++|+.+
T Consensus       203 s~N-~lt~i~~l~--~l~~L~~L  222 (227)
T d1h6ua2         203 KNN-QISDVSPLA--NTSNLFIV  222 (227)
T ss_dssp             TTS-CCCBCGGGT--TCTTCCEE
T ss_pred             cCC-cCCCCcccc--cCCCCCEE
Confidence            998 688887321  23556554

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.00  E-value=4.9e-10  Score=87.49  Aligned_cols=140  Identities=17%  Similarity=0.167  Sum_probs=95.4

Q ss_pred             cceeEEEEeecCCCCCcccchhhcccCCeEEEeecCCceEEecccCccCcccccCCCCccEEEEecCCCCCcCcccccCC
Q 026434           34 SITQSVGVYQCRSPPFNVFHLAYMENLQELELEYCNLEEMKIDSTDEVKKLFQSGFRSLNTVHVFYCQKAKDLTWLVFVQ  113 (238)
Q Consensus        34 ~~L~~L~l~~c~~l~~~~~~l~~l~~L~~L~i~~c~l~~i~~~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~l~  113 (238)
                      ..++.|.+.+|. +. .+..+.++++|++|++++|.++.+.          ....+++|+.|+++++ ++++++.+..++
T Consensus        46 ~~L~~L~l~~~~-i~-~l~~l~~l~~L~~L~L~~n~i~~l~----------~~~~l~~L~~L~l~~n-~i~~l~~l~~l~  112 (210)
T d1h6ta2          46 NSIDQIIANNSD-IK-SVQGIQYLPNVTKLFLNGNKLTDIK----------PLANLKNLGWLFLDEN-KVKDLSSLKDLK  112 (210)
T ss_dssp             HTCCEEECTTSC-CC-CCTTGGGCTTCCEEECCSSCCCCCG----------GGTTCTTCCEEECCSS-CCCCGGGGTTCT
T ss_pred             cCccEEECcCCC-CC-CchhHhhCCCCCEEeCCCccccCcc----------ccccCccccccccccc-cccccccccccc
Confidence            467888887763 23 2556788899999999988855442          2346889999999887 688888788899


Q ss_pred             CccEEEEecccccceecccccccccccccccccccccccceeeccccccccccCCCCCCCCCccEEeEcCccCCCCCCCC
Q 026434          114 NLKKLRIEFCDDVEEIIGVDKLRDISEIIGSEHNFFAQLEYLTISWGINLKGVYPNPLPFPKLKKIKVRGCRHLKKLPLN  193 (238)
Q Consensus       114 ~L~~L~i~~C~~l~~l~~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~~~~~~~~L~~L~i~~C~~L~~lp~~  193 (238)
                      +|+.|.+.++.. ..+              .....+++|+.+.+.+. .++++. ....+++|+.+++.++ +++.++.-
T Consensus       113 ~L~~L~l~~~~~-~~~--------------~~l~~l~~l~~l~~~~n-~l~~~~-~~~~l~~L~~l~l~~n-~l~~i~~l  174 (210)
T d1h6ta2         113 KLKSLSLEHNGI-SDI--------------NGLVHLPQLESLYLGNN-KITDIT-VLSRLTKLDTLSLEDN-QISDIVPL  174 (210)
T ss_dssp             TCCEEECTTSCC-CCC--------------GGGGGCTTCCEEECCSS-CCCCCG-GGGGCTTCSEEECCSS-CCCCCGGG
T ss_pred             cccccccccccc-ccc--------------ccccccccccccccccc-cccccc-cccccccccccccccc-cccccccc
Confidence            999999988742 222              23455678888887654 344332 2345788999999888 56666531


Q ss_pred             CCCCCCcceEEEc
Q 026434          194 SSSAKERRVVIEG  206 (238)
Q Consensus       194 ~~~~~~~L~~~~~  206 (238)
                      .  ..++|+.+.-
T Consensus       175 ~--~l~~L~~L~L  185 (210)
T d1h6ta2         175 A--GLTKLQNLYL  185 (210)
T ss_dssp             T--TCTTCCEEEC
T ss_pred             c--CCCCCCEEEC
Confidence            1  1255665543

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.87  E-value=5.2e-09  Score=82.24  Aligned_cols=158  Identities=14%  Similarity=0.142  Sum_probs=88.7

Q ss_pred             ccccccCCCcceeEEeeehHHHHhhhcCchhhcceeEEEEeecCCCCCcccchhhcccCCeEEEeecCCceEE-ecccCc
Q 026434            2 KELLGLKHLKVLSWSFGSSLAVQKFLKYPKLVSITQSVGVYQCRSPPFNVFHLAYMENLQELELEYCNLEEMK-IDSTDE   80 (238)
Q Consensus         2 ~eL~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~c~~l~~~~~~l~~l~~L~~L~i~~c~l~~i~-~~~~~~   80 (238)
                      +.+.++++|+.|++.-.....+..+.    ...+++.+.+.++.- + .+..+..+++|+.+.+++|....+. ......
T Consensus        57 ~~l~~l~~L~~L~ls~n~i~~~~~l~----~l~~l~~l~~~~n~~-~-~i~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~  130 (227)
T d1h6ua2          57 EGVQYLNNLIGLELKDNQITDLAPLK----NLTKITELELSGNPL-K-NVSAIAGLQSIKTLDLTSTQITDVTPLAGLSN  130 (227)
T ss_dssp             TTGGGCTTCCEEECCSSCCCCCGGGT----TCCSCCEEECCSCCC-S-CCGGGTTCTTCCEEECTTSCCCCCGGGTTCTT
T ss_pred             hhHhcCCCCcEeecCCceeecccccc----ccccccccccccccc-c-ccccccccccccccccccccccccchhccccc
Confidence            34566777777766432222222211    124666776665532 2 3455667777777777766522111 100000


Q ss_pred             -----------cCcccccCCCCccEEEEecCCCCCcCcccccCCCccEEEEecccccceecccccccccccccccccccc
Q 026434           81 -----------VKKLFQSGFRSLNTVHVFYCQKAKDLTWLVFVQNLKKLRIEFCDDVEEIIGVDKLRDISEIIGSEHNFF  149 (238)
Q Consensus        81 -----------~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~l~~L~~L~i~~C~~l~~l~~~~~~~~~~~~~~~~~~~~  149 (238)
                                 .........++|+.|.+.+| ++.+...++.+++|++|+++++ +++.+              ..+..+
T Consensus       131 ~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~n-~~~~~~~l~~l~~L~~L~Ls~n-~l~~l--------------~~l~~l  194 (227)
T d1h6ua2         131 LQVLYLDLNQITNISPLAGLTNLQYLSIGNA-QVSDLTPLANLSKLTTLKADDN-KISDI--------------SPLASL  194 (227)
T ss_dssp             CCEEECCSSCCCCCGGGGGCTTCCEEECCSS-CCCCCGGGTTCTTCCEEECCSS-CCCCC--------------GGGGGC
T ss_pred             hhhhhchhhhhchhhhhcccccccccccccc-ccccchhhcccccceecccCCC-ccCCC--------------hhhcCC
Confidence                       01122345667777777766 4556566677778888887776 45544              234456


Q ss_pred             cccceeeccccccccccCCCCCCCCCccEEeEcC
Q 026434          150 AQLEYLTISWGINLKGVYPNPLPFPKLKKIKVRG  183 (238)
Q Consensus       150 p~L~~L~L~~~~~L~~i~~~~~~~~~L~~L~i~~  183 (238)
                      ++|++|+++++ +++++.. ...+++|+.|++++
T Consensus       195 ~~L~~L~Ls~N-~lt~i~~-l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         195 PNLIEVHLKNN-QISDVSP-LANTSNLFIVTLTN  226 (227)
T ss_dssp             TTCCEEECTTS-CCCBCGG-GTTCTTCCEEEEEE
T ss_pred             CCCCEEECcCC-cCCCCcc-cccCCCCCEEEeeC
Confidence            77888888776 5766642 34567777777653

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.82  E-value=6e-09  Score=87.32  Aligned_cols=153  Identities=16%  Similarity=0.190  Sum_probs=93.7

Q ss_pred             ccccCCCcceeEEeeehHHHHhhhcCchhhcceeEEEEeecCCCCCcccchhhcccCCeEEEeecCCceEEecccCccCc
Q 026434            4 LLGLKHLKVLSWSFGSSLAVQKFLKYPKLVSITQSVGVYQCRSPPFNVFHLAYMENLQELELEYCNLEEMKIDSTDEVKK   83 (238)
Q Consensus         4 L~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~c~~l~~~~~~l~~l~~L~~L~i~~c~l~~i~~~~~~~~~~   83 (238)
                      .....+|+.|++.......+..+    ...++++.|.+.++. +. .+..+..+++|+.|+++++.+..+.         
T Consensus       215 ~~~~~~L~~L~l~~n~l~~~~~l----~~l~~L~~L~l~~n~-l~-~~~~~~~~~~L~~L~l~~~~l~~~~---------  279 (384)
T d2omza2         215 LGILTNLDELSLNGNQLKDIGTL----ASLTNLTDLDLANNQ-IS-NLAPLSGLTKLTELKLGANQISNIS---------  279 (384)
T ss_dssp             GGGCTTCCEEECCSSCCCCCGGG----GGCTTCSEEECCSSC-CC-CCGGGTTCTTCSEEECCSSCCCCCG---------
T ss_pred             ccccCCCCEEECCCCCCCCcchh----hcccccchhccccCc-cC-CCCcccccccCCEeeccCcccCCCC---------
Confidence            34557778777653332222222    223578999988874 33 3556788899999999888744331         


Q ss_pred             ccccCCCCccEEEEecCCCCCcCcccccCCCccEEEEecccccceecccccccccccccccccccccccceeeccccccc
Q 026434           84 LFQSGFRSLNTVHVFYCQKAKDLTWLVFVQNLKKLRIEFCDDVEEIIGVDKLRDISEIIGSEHNFFAQLEYLTISWGINL  163 (238)
Q Consensus        84 ~~~~~l~~L~~L~i~~C~~L~~l~~~~~l~~L~~L~i~~C~~l~~l~~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L  163 (238)
                       ....++.++.+.+.++ .+..+..+..++++++|+++++ +++++              ..+..+|+|++|++.++ ++
T Consensus       280 -~~~~~~~l~~l~~~~n-~l~~~~~~~~~~~l~~L~ls~n-~l~~l--------------~~l~~l~~L~~L~L~~n-~l  341 (384)
T d2omza2         280 -PLAGLTALTNLELNEN-QLEDISPISNLKNLTYLTLYFN-NISDI--------------SPVSSLTKLQRLFFANN-KV  341 (384)
T ss_dssp             -GGTTCTTCSEEECCSS-CCSCCGGGGGCTTCSEEECCSS-CCSCC--------------GGGGGCTTCCEEECCSS-CC
T ss_pred             -cccccccccccccccc-ccccccccchhcccCeEECCCC-CCCCC--------------cccccCCCCCEEECCCC-CC
Confidence             1234566677766655 4556655666777777777665 44443              22345677777777766 45


Q ss_pred             cccCCCCCCCCCccEEeEcCccCCCCCC
Q 026434          164 KGVYPNPLPFPKLKKIKVRGCRHLKKLP  191 (238)
Q Consensus       164 ~~i~~~~~~~~~L~~L~i~~C~~L~~lp  191 (238)
                      +++. ....+++|+.|+++++ +++.+|
T Consensus       342 ~~l~-~l~~l~~L~~L~l~~N-~l~~l~  367 (384)
T d2omza2         342 SDVS-SLANLTNINWLSAGHN-QISDLT  367 (384)
T ss_dssp             CCCG-GGGGCTTCCEEECCSS-CCCBCG
T ss_pred             CCCh-hHcCCCCCCEEECCCC-cCCCCh
Confidence            5543 2344677777777766 456654

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.75  E-value=2.5e-08  Score=83.39  Aligned_cols=167  Identities=16%  Similarity=0.198  Sum_probs=111.8

Q ss_pred             ccccCCCcceeEEeeehHHHHhhhcCchhhcceeEEEEeecCCCCCcccchhhcccCCeEEEeecCCceEEecccCccCc
Q 026434            4 LLGLKHLKVLSWSFGSSLAVQKFLKYPKLVSITQSVGVYQCRSPPFNVFHLAYMENLQELELEYCNLEEMKIDSTDEVKK   83 (238)
Q Consensus         4 L~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~c~~l~~~~~~l~~l~~L~~L~i~~c~l~~i~~~~~~~~~~   83 (238)
                      ...+.+++.+.+.......+..    .....+|+.|.+.++. +. .++.+..+++|+.|.+.+|.+..+          
T Consensus       193 ~~~l~~~~~l~l~~n~i~~~~~----~~~~~~L~~L~l~~n~-l~-~~~~l~~l~~L~~L~l~~n~l~~~----------  256 (384)
T d2omza2         193 LAKLTNLESLIATNNQISDITP----LGILTNLDELSLNGNQ-LK-DIGTLASLTNLTDLDLANNQISNL----------  256 (384)
T ss_dssp             GGGCTTCSEEECCSSCCCCCGG----GGGCTTCCEEECCSSC-CC-CCGGGGGCTTCSEEECCSSCCCCC----------
T ss_pred             cccccccceeeccCCccCCCCc----ccccCCCCEEECCCCC-CC-CcchhhcccccchhccccCccCCC----------
Confidence            3445666666554222111111    1223578999998874 33 356778889999999999885443          


Q ss_pred             ccccCCCCccEEEEecCCCCCcCcccccCCCccEEEEecccccceecccccccccccccccccccccccceeeccccccc
Q 026434           84 LFQSGFRSLNTVHVFYCQKAKDLTWLVFVQNLKKLRIEFCDDVEEIIGVDKLRDISEIIGSEHNFFAQLEYLTISWGINL  163 (238)
Q Consensus        84 ~~~~~l~~L~~L~i~~C~~L~~l~~~~~l~~L~~L~i~~C~~l~~l~~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L  163 (238)
                      +....+++|+.|+++++ +++.++.+..++.++.+.+.++ .+..+              .....+++++.|++++. ++
T Consensus       257 ~~~~~~~~L~~L~l~~~-~l~~~~~~~~~~~l~~l~~~~n-~l~~~--------------~~~~~~~~l~~L~ls~n-~l  319 (384)
T d2omza2         257 APLSGLTKLTELKLGAN-QISNISPLAGLTALTNLELNEN-QLEDI--------------SPISNLKNLTYLTLYFN-NI  319 (384)
T ss_dssp             GGGTTCTTCSEEECCSS-CCCCCGGGTTCTTCSEEECCSS-CCSCC--------------GGGGGCTTCSEEECCSS-CC
T ss_pred             CcccccccCCEeeccCc-ccCCCCcccccccccccccccc-ccccc--------------cccchhcccCeEECCCC-CC
Confidence            12345789999999876 6778877788899999888766 23322              23456788999998866 56


Q ss_pred             cccCCCCCCCCCccEEeEcCccCCCCCCCCCCCCCCcceEEEch
Q 026434          164 KGVYPNPLPFPKLKKIKVRGCRHLKKLPLNSSSAKERRVVIEGS  207 (238)
Q Consensus       164 ~~i~~~~~~~~~L~~L~i~~C~~L~~lp~~~~~~~~~L~~~~~~  207 (238)
                      +++. ....+++|++|++++| +++.+|.  ....++|+.+...
T Consensus       320 ~~l~-~l~~l~~L~~L~L~~n-~l~~l~~--l~~l~~L~~L~l~  359 (384)
T d2omza2         320 SDIS-PVSSLTKLQRLFFANN-KVSDVSS--LANLTNINWLSAG  359 (384)
T ss_dssp             SCCG-GGGGCTTCCEEECCSS-CCCCCGG--GGGCTTCCEEECC
T ss_pred             CCCc-ccccCCCCCEEECCCC-CCCCChh--HcCCCCCCEEECC
Confidence            6553 2456899999999999 7888872  1223677777543

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.67  E-value=2.4e-08  Score=80.25  Aligned_cols=156  Identities=15%  Similarity=0.122  Sum_probs=95.0

Q ss_pred             CCCcceeEEeeehHHHH-hhhcCchhhcceeEEEEeecCCCCCcccchhhcccCCeEEEeecCCceEEecccCccCcccc
Q 026434            8 KHLKVLSWSFGSSLAVQ-KFLKYPKLVSITQSVGVYQCRSPPFNVFHLAYMENLQELELEYCNLEEMKIDSTDEVKKLFQ   86 (238)
Q Consensus         8 ~~L~~L~i~~~~~~~l~-~l~~~~~l~~~L~~L~l~~c~~l~~~~~~l~~l~~L~~L~i~~c~l~~i~~~~~~~~~~~~~   86 (238)
                      .+|+.|+++......+. ..+   .-.++|+.|++.++ .+.. ++....+++|+.|+++++.+..+.         ...
T Consensus        31 ~~l~~L~Ls~N~i~~l~~~~f---~~l~~L~~L~L~~N-~l~~-l~~~~~l~~L~~L~Ls~N~l~~~~---------~~~   96 (266)
T d1p9ag_          31 KDTTILHLSENLLYTFSLATL---MPYTRLTQLNLDRA-ELTK-LQVDGTLPVLGTLDLSHNQLQSLP---------LLG   96 (266)
T ss_dssp             TTCCEEECTTSCCSEEEGGGG---TTCTTCCEEECTTS-CCCE-EECCSCCTTCCEEECCSSCCSSCC---------CCT
T ss_pred             cCCCEEECcCCcCCCcCHHHh---hccccccccccccc-cccc-cccccccccccccccccccccccc---------ccc
Confidence            46777776432222221 111   12367999999887 3443 445567889999999998854332         123


Q ss_pred             cCCCCccEEEEecCCCCCcCc--ccccCCCccEEEEecccccceecccccccccccccccccccccccceeecccccccc
Q 026434           87 SGFRSLNTVHVFYCQKAKDLT--WLVFVQNLKKLRIEFCDDVEEIIGVDKLRDISEIIGSEHNFFAQLEYLTISWGINLK  164 (238)
Q Consensus        87 ~~l~~L~~L~i~~C~~L~~l~--~~~~l~~L~~L~i~~C~~l~~l~~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~  164 (238)
                      ..+++|+.|+++++. +..++  ....++++++|.+.++ .+..+..            .....+++|+.+.+.+. +++
T Consensus        97 ~~l~~L~~L~l~~~~-~~~~~~~~~~~l~~l~~L~l~~n-~l~~l~~------------~~~~~l~~l~~l~l~~N-~l~  161 (266)
T d1p9ag_          97 QTLPALTVLDVSFNR-LTSLPLGALRGLGELQELYLKGN-ELKTLPP------------GLLTPTPKLEKLSLANN-NLT  161 (266)
T ss_dssp             TTCTTCCEEECCSSC-CCCCCSSTTTTCTTCCEEECTTS-CCCCCCT------------TTTTTCTTCCEEECTTS-CCS
T ss_pred             ccccccccccccccc-cceeecccccccccccccccccc-ccceecc------------ccccccccchhcccccc-ccc
Confidence            457888888888774 44433  2356778888888765 3433321            23344667777777664 566


Q ss_pred             ccCCC-CCCCCCccEEeEcCccCCCCCCCC
Q 026434          165 GVYPN-PLPFPKLKKIKVRGCRHLKKLPLN  193 (238)
Q Consensus       165 ~i~~~-~~~~~~L~~L~i~~C~~L~~lp~~  193 (238)
                      .+... ...+++|+.|+++++. |+.+|.+
T Consensus       162 ~~~~~~~~~l~~L~~L~Ls~N~-L~~lp~~  190 (266)
T d1p9ag_         162 ELPAGLLNGLENLDTLLLQENS-LYTIPKG  190 (266)
T ss_dssp             CCCTTTTTTCTTCCEEECCSSC-CCCCCTT
T ss_pred             ccCccccccccccceeecccCC-CcccChh
Confidence            65543 2446777777777764 7777754

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.57  E-value=2e-07  Score=75.85  Aligned_cols=180  Identities=11%  Similarity=0.050  Sum_probs=105.7

Q ss_pred             CCCcceeEEeeehHHHHhhhcCchhhcceeEEEEeecCCCCCcccchhhcccCCeEEEeecCCceEEecccCc-------
Q 026434            8 KHLKVLSWSFGSSLAVQKFLKYPKLVSITQSVGVYQCRSPPFNVFHLAYMENLQELELEYCNLEEMKIDSTDE-------   80 (238)
Q Consensus         8 ~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~c~~l~~~~~~l~~l~~L~~L~i~~c~l~~i~~~~~~~-------   80 (238)
                      .+++.|++.......+..  ....-.++|+.|.+.++.-.......+.++++|+.|+++++.++.+.......       
T Consensus        31 ~~l~~L~Ls~N~i~~l~~--~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~l~~l~~~~~~~l~~L~~~  108 (305)
T d1xkua_          31 PDTALLDLQNNKITEIKD--GDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVH  108 (305)
T ss_dssp             TTCCEEECCSSCCCCBCT--TTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCCTTCCEEECC
T ss_pred             CCCCEEECcCCcCCCcCh--hHhhccccccccccccccccccchhhhhCCCccCEecccCCccCcCccchhhhhhhhhcc
Confidence            557777765332222221  01122357888888887643222234677888888888877644332111000       


Q ss_pred             ----c-------------------C---------cccccCCCCccEEEEecCCCCCcCcccccCCCccEEEEecccccce
Q 026434           81 ----V-------------------K---------KLFQSGFRSLNTVHVFYCQKAKDLTWLVFVQNLKKLRIEFCDDVEE  128 (238)
Q Consensus        81 ----~-------------------~---------~~~~~~l~~L~~L~i~~C~~L~~l~~~~~l~~L~~L~i~~C~~l~~  128 (238)
                          .                   .         ......+++|+.+.+.++ ++..++. ..+++|++|++.++.....
T Consensus       109 ~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n-~l~~l~~-~~~~~L~~L~l~~n~~~~~  186 (305)
T d1xkua_         109 ENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADT-NITTIPQ-GLPPSLTELHLDGNKITKV  186 (305)
T ss_dssp             SSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSS-CCCSCCS-SCCTTCSEEECTTSCCCEE
T ss_pred             ccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccC-CccccCc-ccCCccCEEECCCCcCCCC
Confidence                0                   0         012334667888888776 4555542 3467888888877644332


Q ss_pred             eccccc-----------ccccccccccccccccccceeeccccccccccCCCCCCCCCccEEeEcCccCCCCCCCC
Q 026434          129 IIGVDK-----------LRDISEIIGSEHNFFAQLEYLTISWGINLKGVYPNPLPFPKLKKIKVRGCRHLKKLPLN  193 (238)
Q Consensus       129 l~~~~~-----------~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~~~~~~~~L~~L~i~~C~~L~~lp~~  193 (238)
                      ....-.           ......+.......+++|++|+|.++ ++++++.....+++|+.|+++++ +|+.++..
T Consensus       187 ~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N-~L~~lp~~l~~l~~L~~L~Ls~N-~i~~i~~~  260 (305)
T d1xkua_         187 DAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNN-KLVKVPGGLADHKYIQVVYLHNN-NISAIGSN  260 (305)
T ss_dssp             CTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSS-CCSSCCTTTTTCSSCCEEECCSS-CCCCCCTT
T ss_pred             ChhHhhccccccccccccccccccccccccccccceeeecccc-cccccccccccccCCCEEECCCC-ccCccChh
Confidence            211100           00111121244566899999999998 78888776677899999999997 68888743

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.55  E-value=6.9e-08  Score=72.07  Aligned_cols=102  Identities=14%  Similarity=0.147  Sum_probs=62.4

Q ss_pred             ceeEEEEeecCCCCCcccch-hhcccCCeEEEeecCCceEEecccCccCcccccCCCCccEEEEecCCCCCcCcc--ccc
Q 026434           35 ITQSVGVYQCRSPPFNVFHL-AYMENLQELELEYCNLEEMKIDSTDEVKKLFQSGFRSLNTVHVFYCQKAKDLTW--LVF  111 (238)
Q Consensus        35 ~L~~L~l~~c~~l~~~~~~l-~~l~~L~~L~i~~c~l~~i~~~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~--~~~  111 (238)
                      .++.|++.++. +.. ++.+ ..+++|+.|+++++.++.+.          ....+++|+.|+++++ +++.++.  ...
T Consensus        19 ~lr~L~L~~n~-I~~-i~~~~~~l~~L~~L~Ls~N~i~~l~----------~~~~l~~L~~L~ls~N-~i~~l~~~~~~~   85 (162)
T d1a9na_          19 RDRELDLRGYK-IPV-IENLGATLDQFDAIDFSDNEIRKLD----------GFPLLRRLKTLLVNNN-RICRIGEGLDQA   85 (162)
T ss_dssp             SCEEEECTTSC-CCS-CCCGGGGTTCCSEEECCSSCCCEEC----------CCCCCSSCCEEECCSS-CCCEECSCHHHH
T ss_pred             cCcEEECCCCC-CCc-cCccccccccCCEEECCCCCCCccC----------CcccCcchhhhhcccc-cccCCCcccccc
Confidence            57777777764 222 3333 45677888888887755551          1235777888888877 4666653  346


Q ss_pred             CCCccEEEEecccccceecccccccccccccccccccccccceeeccccc
Q 026434          112 VQNLKKLRIEFCDDVEEIIGVDKLRDISEIIGSEHNFFAQLEYLTISWGI  161 (238)
Q Consensus       112 l~~L~~L~i~~C~~l~~l~~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~  161 (238)
                      +++|++|++.++ ++..+..      .     ..+..+|+|++|++.+++
T Consensus        86 l~~L~~L~L~~N-~i~~~~~------l-----~~l~~l~~L~~L~l~~N~  123 (162)
T d1a9na_          86 LPDLTELILTNN-SLVELGD------L-----DPLASLKSLTYLCILRNP  123 (162)
T ss_dssp             CTTCCEEECCSC-CCCCGGG------G-----GGGGGCTTCCEEECCSSG
T ss_pred             ccccccceeccc-ccccccc------c-----cccccccccchhhcCCCc
Confidence            778888888776 2332210      0     234456777777777664

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.53  E-value=5.2e-08  Score=72.77  Aligned_cols=116  Identities=10%  Similarity=0.082  Sum_probs=84.4

Q ss_pred             cchhhcccCCeEEEeecCCceEEecccCccCcccccCCCCccEEEEecCCCCCcCcccccCCCccEEEEecccccceecc
Q 026434           52 FHLAYMENLQELELEYCNLEEMKIDSTDEVKKLFQSGFRSLNTVHVFYCQKAKDLTWLVFVQNLKKLRIEFCDDVEEIIG  131 (238)
Q Consensus        52 ~~l~~l~~L~~L~i~~c~l~~i~~~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~l~~L~~L~i~~C~~l~~l~~  131 (238)
                      +.+.+...+++|+++++.+..+. +        ....+++|+.|+++++ +++.++.+..+++|++|++++|. ++.+.+
T Consensus        12 ~~~~n~~~lr~L~L~~n~I~~i~-~--------~~~~l~~L~~L~Ls~N-~i~~l~~~~~l~~L~~L~ls~N~-i~~l~~   80 (162)
T d1a9na_          12 AQYTNAVRDRELDLRGYKIPVIE-N--------LGATLDQFDAIDFSDN-EIRKLDGFPLLRRLKTLLVNNNR-ICRIGE   80 (162)
T ss_dssp             CEEECTTSCEEEECTTSCCCSCC-C--------GGGGTTCCSEEECCSS-CCCEECCCCCCSSCCEEECCSSC-CCEECS
T ss_pred             HhccCcCcCcEEECCCCCCCccC-c--------cccccccCCEEECCCC-CCCccCCcccCcchhhhhccccc-ccCCCc
Confidence            34456678999999999866552 1        1135889999999997 68888888899999999999984 665531


Q ss_pred             cccccccccccccccccccccceeeccccccccccCC--CCCCCCCccEEeEcCccCCCCCCC
Q 026434          132 VDKLRDISEIIGSEHNFFAQLEYLTISWGINLKGVYP--NPLPFPKLKKIKVRGCRHLKKLPL  192 (238)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~--~~~~~~~L~~L~i~~C~~L~~lp~  192 (238)
                                  .....+|+|++|++.++. ++++..  ....+|+|+.|++.+|| +..+|.
T Consensus        81 ------------~~~~~l~~L~~L~L~~N~-i~~~~~l~~l~~l~~L~~L~l~~N~-i~~~~~  129 (162)
T d1a9na_          81 ------------GLDQALPDLTELILTNNS-LVELGDLDPLASLKSLTYLCILRNP-VTNKKH  129 (162)
T ss_dssp             ------------CHHHHCTTCCEEECCSCC-CCCGGGGGGGGGCTTCCEEECCSSG-GGGSTT
T ss_pred             ------------cccccccccccceecccc-ccccccccccccccccchhhcCCCc-cccccc
Confidence                        123468999999998763 443332  23468999999999996 355553

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.53  E-value=6.6e-07  Score=71.58  Aligned_cols=134  Identities=19%  Similarity=0.214  Sum_probs=94.3

Q ss_pred             hcceeEEEEeecCCCCC-cccchhhcccCCeEEEeecCCceEEecccCccCcccccCCCCccEEEEecCCCCCcCc-ccc
Q 026434           33 VSITQSVGVYQCRSPPF-NVFHLAYMENLQELELEYCNLEEMKIDSTDEVKKLFQSGFRSLNTVHVFYCQKAKDLT-WLV  110 (238)
Q Consensus        33 ~~~L~~L~l~~c~~l~~-~~~~l~~l~~L~~L~i~~c~l~~i~~~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~-~~~  110 (238)
                      .++++.|+|.+.. +.. ....+.++++|++|+++++.++.+...          ..+++|+.|+++++ +++..+ .+.
T Consensus        30 p~~l~~L~Ls~N~-i~~l~~~~f~~l~~L~~L~L~~N~l~~l~~~----------~~l~~L~~L~Ls~N-~l~~~~~~~~   97 (266)
T d1p9ag_          30 PKDTTILHLSENL-LYTFSLATLMPYTRLTQLNLDRAELTKLQVD----------GTLPVLGTLDLSHN-QLQSLPLLGQ   97 (266)
T ss_dssp             CTTCCEEECTTSC-CSEEEGGGGTTCTTCCEEECTTSCCCEEECC----------SCCTTCCEEECCSS-CCSSCCCCTT
T ss_pred             CcCCCEEECcCCc-CCCcCHHHhhccccccccccccccccccccc----------cccccccccccccc-cccccccccc
Confidence            3689999988753 333 334577889999999999887666422          35889999999987 566654 456


Q ss_pred             cCCCccEEEEecccccceecccccccccccccccccccccccceeeccccccccccCCC-CCCCCCccEEeEcCccCCCC
Q 026434          111 FVQNLKKLRIEFCDDVEEIIGVDKLRDISEIIGSEHNFFAQLEYLTISWGINLKGVYPN-PLPFPKLKKIKVRGCRHLKK  189 (238)
Q Consensus       111 ~l~~L~~L~i~~C~~l~~l~~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~~-~~~~~~L~~L~i~~C~~L~~  189 (238)
                      .+++|+.|++.++.. ..+..            .....+++++.|.+.+. .++.++.. ...+++|+.+++.++ +++.
T Consensus        98 ~l~~L~~L~l~~~~~-~~~~~------------~~~~~l~~l~~L~l~~n-~l~~l~~~~~~~l~~l~~l~l~~N-~l~~  162 (266)
T d1p9ag_          98 TLPALTVLDVSFNRL-TSLPL------------GALRGLGELQELYLKGN-ELKTLPPGLLTPTPKLEKLSLANN-NLTE  162 (266)
T ss_dssp             TCTTCCEEECCSSCC-CCCCS------------STTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTS-CCSC
T ss_pred             ccccccccccccccc-ceeec------------ccccccccccccccccc-ccceeccccccccccchhcccccc-cccc
Confidence            789999999987743 22211            34456788999998865 56666553 345789999999887 5666


Q ss_pred             CCCC
Q 026434          190 LPLN  193 (238)
Q Consensus       190 lp~~  193 (238)
                      +|..
T Consensus       163 ~~~~  166 (266)
T d1p9ag_         163 LPAG  166 (266)
T ss_dssp             CCTT
T ss_pred             cCcc
Confidence            6643

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.48  E-value=2e-07  Score=66.35  Aligned_cols=99  Identities=11%  Similarity=0.096  Sum_probs=68.1

Q ss_pred             EEEEeecCCCCCcccchhhcccCCeEEEeecCCceEEecccCccCcccccCCCCccEEEEecCCCCCcCcccccCCCccE
Q 026434           38 SVGVYQCRSPPFNVFHLAYMENLQELELEYCNLEEMKIDSTDEVKKLFQSGFRSLNTVHVFYCQKAKDLTWLVFVQNLKK  117 (238)
Q Consensus        38 ~L~l~~c~~l~~~~~~l~~l~~L~~L~i~~c~l~~i~~~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~l~~L~~  117 (238)
                      .|++.+. ++. .++.+.++++|++|+++++.++.++         .....+++|+.|++++. .++.++.+..+++|++
T Consensus         2 ~L~Ls~n-~l~-~l~~l~~l~~L~~L~ls~N~l~~lp---------~~~~~l~~L~~L~l~~N-~i~~l~~~~~l~~L~~   69 (124)
T d1dcea3           2 VLHLAHK-DLT-VLCHLEQLLLVTHLDLSHNRLRALP---------PALAALRCLEVLQASDN-ALENVDGVANLPRLQE   69 (124)
T ss_dssp             EEECTTS-CCS-SCCCGGGGTTCCEEECCSSCCCCCC---------GGGGGCTTCCEEECCSS-CCCCCGGGTTCSSCCE
T ss_pred             EEEcCCC-CCC-CCcccccCCCCCEEECCCCccCcch---------hhhhhhhcccccccccc-cccccCccccccccCe
Confidence            4555554 223 3556788889999999888766552         12346889999999885 7888888888999999


Q ss_pred             EEEecccccceecccccccccccccccccccccccceeecccc
Q 026434          118 LRIEFCDDVEEIIGVDKLRDISEIIGSEHNFFAQLEYLTISWG  160 (238)
Q Consensus       118 L~i~~C~~l~~l~~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~  160 (238)
                      |++.+. ++..+...           .....+|+|+.|++.+-
T Consensus        70 L~l~~N-~i~~~~~~-----------~~l~~~~~L~~L~l~~N  100 (124)
T d1dcea3          70 LLLCNN-RLQQSAAI-----------QPLVSCPRLVLLNLQGN  100 (124)
T ss_dssp             EECCSS-CCCSSSTT-----------GGGGGCTTCCEEECTTS
T ss_pred             EECCCC-ccCCCCCc-----------hhhcCCCCCCEEECCCC
Confidence            998876 33333110           23456788888888753

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.46  E-value=3.2e-07  Score=74.07  Aligned_cols=115  Identities=17%  Similarity=0.191  Sum_probs=71.6

Q ss_pred             chhhcccCCeEEEeecCCceEEecccCccCcccccCCCCccEEEEecCCCCCcCcc--cccCCCccEEEEecccccceec
Q 026434           53 HLAYMENLQELELEYCNLEEMKIDSTDEVKKLFQSGFRSLNTVHVFYCQKAKDLTW--LVFVQNLKKLRIEFCDDVEEII  130 (238)
Q Consensus        53 ~l~~l~~L~~L~i~~c~l~~i~~~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~--~~~l~~L~~L~i~~C~~l~~l~  130 (238)
                      .+.++++|+.|++.++.+..+...        ....+.+|+.+++.+. .++.++.  +..+++|++|++.++ ++..+.
T Consensus       100 ~~~~l~~L~~L~l~~n~~~~~~~~--------~~~~~~~L~~l~l~~N-~l~~i~~~~f~~~~~L~~L~l~~N-~l~~l~  169 (284)
T d1ozna_         100 TFHGLGRLHTLHLDRCGLQELGPG--------LFRGLAALQYLYLQDN-ALQALPDDTFRDLGNLTHLFLHGN-RISSVP  169 (284)
T ss_dssp             TTTTCTTCCEEECTTSCCCCCCTT--------TTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCEEC
T ss_pred             hhcccccCCEEecCCccccccccc--------ccchhcccchhhhccc-cccccChhHhccccchhhcccccC-cccccc
Confidence            455667777777777663333211        1234667888887765 5766653  456778888888777 455542


Q ss_pred             ccccccccccccccccccccccceeeccccccccccCC-CCCCCCCccEEeEcCccCCCCCC
Q 026434          131 GVDKLRDISEIIGSEHNFFAQLEYLTISWGINLKGVYP-NPLPFPKLKKIKVRGCRHLKKLP  191 (238)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~-~~~~~~~L~~L~i~~C~~L~~lp  191 (238)
                      .            .....+++|+.+.+.+.. +.++.. ....+++|+.|+++++. +..+|
T Consensus       170 ~------------~~f~~l~~L~~l~l~~N~-l~~i~~~~f~~l~~L~~L~l~~N~-i~~~~  217 (284)
T d1ozna_         170 E------------RAFRGLHSLDRLLLHQNR-VAHVHPHAFRDLGRLMTLYLFANN-LSALP  217 (284)
T ss_dssp             T------------TTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSC-CSCCC
T ss_pred             h------------hhhccccccchhhhhhcc-ccccChhHhhhhhhcccccccccc-ccccc
Confidence            2            234467788888887653 444433 34567889999988765 34455

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.39  E-value=4.2e-07  Score=73.94  Aligned_cols=125  Identities=9%  Similarity=0.086  Sum_probs=76.0

Q ss_pred             cceeEEEEeecCCCCCcccchhhcccCCeEEEeecCCceEEecccCccCcccccCCCCccEEEEecCCCCCcCc--cccc
Q 026434           34 SITQSVGVYQCRSPPFNVFHLAYMENLQELELEYCNLEEMKIDSTDEVKKLFQSGFRSLNTVHVFYCQKAKDLT--WLVF  111 (238)
Q Consensus        34 ~~L~~L~l~~c~~l~~~~~~l~~l~~L~~L~i~~c~l~~i~~~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~--~~~~  111 (238)
                      .+++.+.+.++.- .. ++ ...+++|+.|++.++........        ....+++++.|.++++ .+..++  ++..
T Consensus       150 ~~L~~l~l~~n~l-~~-l~-~~~~~~L~~L~l~~n~~~~~~~~--------~~~~~~~l~~L~~s~n-~l~~~~~~~~~~  217 (305)
T d1xkua_         150 KKLSYIRIADTNI-TT-IP-QGLPPSLTELHLDGNKITKVDAA--------SLKGLNNLAKLGLSFN-SISAVDNGSLAN  217 (305)
T ss_dssp             TTCCEEECCSSCC-CS-CC-SSCCTTCSEEECTTSCCCEECTG--------GGTTCTTCCEEECCSS-CCCEECTTTGGG
T ss_pred             cccCccccccCCc-cc-cC-cccCCccCEEECCCCcCCCCChh--------Hhhccccccccccccc-cccccccccccc
Confidence            4567777766532 21 11 12246788888877763322211        1234667778887776 566653  4566


Q ss_pred             CCCccEEEEecccccceecccccccccccccccccccccccceeeccccccccccCCCC-------CCCCCccEEeEcCc
Q 026434          112 VQNLKKLRIEFCDDVEEIIGVDKLRDISEIIGSEHNFFAQLEYLTISWGINLKGVYPNP-------LPFPKLKKIKVRGC  184 (238)
Q Consensus       112 l~~L~~L~i~~C~~l~~l~~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~~~-------~~~~~L~~L~i~~C  184 (238)
                      +++|++|++.++ +++.+.             ..+..+++|++|++++. +++++....       ...++|+.|++.+.
T Consensus       218 l~~L~~L~L~~N-~L~~lp-------------~~l~~l~~L~~L~Ls~N-~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N  282 (305)
T d1xkua_         218 TPHLRELHLNNN-KLVKVP-------------GGLADHKYIQVVYLHNN-NISAIGSNDFCPPGYNTKKASYSGVSLFSN  282 (305)
T ss_dssp             STTCCEEECCSS-CCSSCC-------------TTTTTCSSCCEEECCSS-CCCCCCTTSSSCSSCCTTSCCCSEEECCSS
T ss_pred             cccceeeecccc-cccccc-------------cccccccCCCEEECCCC-ccCccChhhccCcchhcccCCCCEEECCCC
Confidence            788888888877 555442             24456788888888875 577665321       23467888888776


Q ss_pred             c
Q 026434          185 R  185 (238)
Q Consensus       185 ~  185 (238)
                      |
T Consensus       283 ~  283 (305)
T d1xkua_         283 P  283 (305)
T ss_dssp             S
T ss_pred             c
Confidence            6

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.37  E-value=9e-07  Score=69.37  Aligned_cols=83  Identities=12%  Similarity=0.071  Sum_probs=43.2

Q ss_pred             CCCcceeEEeeehHHHHhhhcCchhhcceeEEEEeecCCCCC-cccchhhcccCCeEEEeecC-CceEEecccCccCccc
Q 026434            8 KHLKVLSWSFGSSLAVQKFLKYPKLVSITQSVGVYQCRSPPF-NVFHLAYMENLQELELEYCN-LEEMKIDSTDEVKKLF   85 (238)
Q Consensus         8 ~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~c~~l~~-~~~~l~~l~~L~~L~i~~c~-l~~i~~~~~~~~~~~~   85 (238)
                      .+++.|++.......+..-  ...-.++|+.|++.++..... +...+..+++++++.+..+. +..+..+.        
T Consensus        29 ~~l~~L~Ls~n~i~~l~~~--~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~--------   98 (242)
T d1xwdc1          29 RNAIELRFVLTKLRVIQKG--AFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEA--------   98 (242)
T ss_dssp             SCCSEEEEESCCCCEECTT--TTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTS--------
T ss_pred             CCCCEEECcCCcCCccChh--Hhhccchhhhhhhccccccceeecccccccccccccccccccccccccccc--------
Confidence            3677777753332222210  001125788888877754332 22345566777777777665 55443221        


Q ss_pred             ccCCCCccEEEEecC
Q 026434           86 QSGFRSLNTVHVFYC  100 (238)
Q Consensus        86 ~~~l~~L~~L~i~~C  100 (238)
                      ...+++|+.+.+.++
T Consensus        99 ~~~l~~L~~l~l~~~  113 (242)
T d1xwdc1          99 FQNLPNLQYLLISNT  113 (242)
T ss_dssp             EECCTTCCEEEEESC
T ss_pred             ccccccccccccchh
Confidence            123556666666554

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.27  E-value=4.9e-06  Score=66.81  Aligned_cols=162  Identities=11%  Similarity=0.067  Sum_probs=85.3

Q ss_pred             hhcceeEEEEeecCCCCC-cccchhhcccCCeEEEeecCCceEEecccCccCcccccCCCCccEEEEecCCCCCcCc--c
Q 026434           32 LVSITQSVGVYQCRSPPF-NVFHLAYMENLQELELEYCNLEEMKIDSTDEVKKLFQSGFRSLNTVHVFYCQKAKDLT--W  108 (238)
Q Consensus        32 l~~~L~~L~l~~c~~l~~-~~~~l~~l~~L~~L~i~~c~l~~i~~~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~--~  108 (238)
                      +...+++|.|++. .++. +...+.++++|++|+++++.+..+.....        ..+..++++.+.....++.++  .
T Consensus        30 ip~~~~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~--------~~~~~~~~l~~~~~~~~~~l~~~~  100 (284)
T d1ozna_          30 IPAASQRIFLHGN-RISHVPAASFRACRNLTILWLHSNVLARIDAAAF--------TGLALLEQLDLSDNAQLRSVDPAT  100 (284)
T ss_dssp             CCTTCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTT--------TTCTTCCEEECCSCTTCCCCCTTT
T ss_pred             CCCCCCEEECcCC-cCCCCCHHHhhccccccccccccccccccccccc--------cccccccccccccccccccccchh
Confidence            3467899999885 3444 33457888999999999887655533221        223444555444444444443  2


Q ss_pred             cccCCCccEEEEecccccceecccccc------------cccccccccccccccccceeeccccccccccCCCC-CCCCC
Q 026434          109 LVFVQNLKKLRIEFCDDVEEIIGVDKL------------RDISEIIGSEHNFFAQLEYLTISWGINLKGVYPNP-LPFPK  175 (238)
Q Consensus       109 ~~~l~~L~~L~i~~C~~l~~l~~~~~~------------~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~~~-~~~~~  175 (238)
                      +..+++|++|++.++.. ..+......            .....+.......+++|++|++.+. +++.+.... ..+++
T Consensus       101 ~~~l~~L~~L~l~~n~~-~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N-~l~~l~~~~f~~l~~  178 (284)
T d1ozna_         101 FHGLGRLHTLHLDRCGL-QELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGN-RISSVPERAFRGLHS  178 (284)
T ss_dssp             TTTCTTCCEEECTTSCC-CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTT
T ss_pred             hcccccCCEEecCCccc-ccccccccchhcccchhhhccccccccChhHhccccchhhcccccC-cccccchhhhccccc
Confidence            33445555555554431 111100000            0000111123445678888888766 577766533 45678


Q ss_pred             ccEEeEcCccCCCCCCCCCCCCCCcceEEE
Q 026434          176 LKKIKVRGCRHLKKLPLNSSSAKERRVVIE  205 (238)
Q Consensus       176 L~~L~i~~C~~L~~lp~~~~~~~~~L~~~~  205 (238)
                      |+.+.+.++.- +.++...-...++|..+.
T Consensus       179 L~~l~l~~N~l-~~i~~~~f~~l~~L~~L~  207 (284)
T d1ozna_         179 LDRLLLHQNRV-AHVHPHAFRDLGRLMTLY  207 (284)
T ss_dssp             CCEEECCSSCC-CEECTTTTTTCTTCCEEE
T ss_pred             cchhhhhhccc-cccChhHhhhhhhccccc
Confidence            88888877643 344322222224455443

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.26  E-value=1.2e-05  Score=62.68  Aligned_cols=82  Identities=13%  Similarity=0.099  Sum_probs=61.7

Q ss_pred             hcceeEEEEeecCCCCC-cccchhhcccCCeEEEeecC-CceEEecccCccCcccccCCCCccEEEEecCCCCCcCcc--
Q 026434           33 VSITQSVGVYQCRSPPF-NVFHLAYMENLQELELEYCN-LEEMKIDSTDEVKKLFQSGFRSLNTVHVFYCQKAKDLTW--  108 (238)
Q Consensus        33 ~~~L~~L~l~~c~~l~~-~~~~l~~l~~L~~L~i~~c~-l~~i~~~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~--  108 (238)
                      .++++.|++.+.. +.. ....+.++++|++|+++++. ...+....        ...+++++.+.+.++.++..++.  
T Consensus        28 ~~~l~~L~Ls~n~-i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~--------f~~l~~l~~l~~~~~n~l~~~~~~~   98 (242)
T d1xwdc1          28 PRNAIELRFVLTK-LRVIQKGAFSGFGDLEKIEISQNDVLEVIEADV--------FSNLPKLHEIRIEKANNLLYINPEA   98 (242)
T ss_dssp             CSCCSEEEEESCC-CCEECTTTTTTCTTCCEEEEESCTTCCEECSSS--------EESCTTCCEEEEECCTTCCEECTTS
T ss_pred             CCCCCEEECcCCc-CCccChhHhhccchhhhhhhccccccceeeccc--------ccccccccccccccccccccccccc
Confidence            3689999999863 444 22346889999999999998 66543222        23578899999998888877653  


Q ss_pred             cccCCCccEEEEecc
Q 026434          109 LVFVQNLKKLRIEFC  123 (238)
Q Consensus       109 ~~~l~~L~~L~i~~C  123 (238)
                      +..+++|++|.+.++
T Consensus        99 ~~~l~~L~~l~l~~~  113 (242)
T d1xwdc1          99 FQNLPNLQYLLISNT  113 (242)
T ss_dssp             EECCTTCCEEEEESC
T ss_pred             ccccccccccccchh
Confidence            568899999999887

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.21  E-value=2.8e-09  Score=82.49  Aligned_cols=106  Identities=19%  Similarity=0.244  Sum_probs=56.3

Q ss_pred             chhhcccCCeEEEeecCCceEEecccCccCcccccCCCCccEEEEecCCCCCcCccc-ccCCCccEEEEecccccceecc
Q 026434           53 HLAYMENLQELELEYCNLEEMKIDSTDEVKKLFQSGFRSLNTVHVFYCQKAKDLTWL-VFVQNLKKLRIEFCDDVEEIIG  131 (238)
Q Consensus        53 ~l~~l~~L~~L~i~~c~l~~i~~~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~-~~l~~L~~L~i~~C~~l~~l~~  131 (238)
                      ++..+++|++|+++++.++.+.          +...+++|+.|+++++ .++.++.+ ..+++|++|++.++ .++.+  
T Consensus        43 sl~~L~~L~~L~Ls~n~I~~i~----------~l~~l~~L~~L~Ls~N-~i~~i~~~~~~~~~L~~L~l~~N-~i~~l--  108 (198)
T d1m9la_          43 TLSTLKACKHLALSTNNIEKIS----------SLSGMENLRILSLGRN-LIKKIENLDAVADTLEELWISYN-QIASL--  108 (198)
T ss_dssp             HHHHTTTCCEEECSEEEESCCC----------CHHHHTTCCEEECCEE-EECSCSSHHHHHHHCCEEECSEE-ECCCH--
T ss_pred             HHhcccccceeECcccCCCCcc----------cccCCccccChhhccc-ccccccccccccccccccccccc-ccccc--
Confidence            4566677777777766644331          1234666777777666 45555433 23456677766655 34333  


Q ss_pred             cccccccccccccccccccccceeeccccccccccCC--CCCCCCCccEEeEcCcc
Q 026434          132 VDKLRDISEIIGSEHNFFAQLEYLTISWGINLKGVYP--NPLPFPKLKKIKVRGCR  185 (238)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~--~~~~~~~L~~L~i~~C~  185 (238)
                                  ..+..+++|+.|++++. +++++..  ....+++|+.|++.++|
T Consensus       109 ------------~~~~~l~~L~~L~L~~N-~i~~~~~~~~l~~l~~L~~L~L~~N~  151 (198)
T d1m9la_         109 ------------SGIEKLVNLRVLYMSNN-KITNWGEIDKLAALDKLEDLLLAGNP  151 (198)
T ss_dssp             ------------HHHHHHHHSSEEEESEE-ECCCHHHHHHHTTTTTCSEEEECSSH
T ss_pred             ------------ccccccccccccccccc-hhccccccccccCCCccceeecCCCc
Confidence                        12334566666666543 1222211  12345666666666654

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=98.17  E-value=9.6e-07  Score=72.03  Aligned_cols=41  Identities=12%  Similarity=0.011  Sum_probs=24.6

Q ss_pred             ccccccCCCcceeEEeeehH--HHHhhhcCchhhcceeEEEEeecC
Q 026434            2 KELLGLKHLKVLSWSFGSSL--AVQKFLKYPKLVSITQSVGVYQCR   45 (238)
Q Consensus         2 ~eL~~L~~L~~L~i~~~~~~--~l~~l~~~~~l~~~L~~L~l~~c~   45 (238)
                      .++.+|.+|++|++......  .+.   ....-.++|++|+|.++.
T Consensus        70 ~~l~~L~~L~~L~Ls~~N~l~g~iP---~~i~~L~~L~~L~Ls~N~  112 (313)
T d1ogqa_          70 SSLANLPYLNFLYIGGINNLVGPIP---PAIAKLTQLHYLYITHTN  112 (313)
T ss_dssp             GGGGGCTTCSEEEEEEETTEESCCC---GGGGGCTTCSEEEEEEEC
T ss_pred             hHHhcCccccccccccccccccccc---cccccccccchhhhcccc
Confidence            46788899999988632111  121   111223578888888874

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.14  E-value=2.8e-06  Score=60.11  Aligned_cols=97  Identities=14%  Similarity=0.166  Sum_probs=69.3

Q ss_pred             CeEEEeecCCceEEecccCccCcccccCCCCccEEEEecCCCCCcCc-ccccCCCccEEEEecccccceecccccccccc
Q 026434           61 QELELEYCNLEEMKIDSTDEVKKLFQSGFRSLNTVHVFYCQKAKDLT-WLVFVQNLKKLRIEFCDDVEEIIGVDKLRDIS  139 (238)
Q Consensus        61 ~~L~i~~c~l~~i~~~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~-~~~~l~~L~~L~i~~C~~l~~l~~~~~~~~~~  139 (238)
                      |.|+++++.++.+          +....+++|++|++++. +++.++ .+..+++|++|++.+. .++.+          
T Consensus         1 R~L~Ls~n~l~~l----------~~l~~l~~L~~L~ls~N-~l~~lp~~~~~l~~L~~L~l~~N-~i~~l----------   58 (124)
T d1dcea3           1 RVLHLAHKDLTVL----------CHLEQLLLVTHLDLSHN-RLRALPPALAALRCLEVLQASDN-ALENV----------   58 (124)
T ss_dssp             SEEECTTSCCSSC----------CCGGGGTTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCSS-CCCCC----------
T ss_pred             CEEEcCCCCCCCC----------cccccCCCCCEEECCCC-ccCcchhhhhhhhcccccccccc-ccccc----------
Confidence            4567777775544          22356889999999876 788886 4778999999999885 55554          


Q ss_pred             cccccccccccccceeeccccccccccCC--CCCCCCCccEEeEcCc
Q 026434          140 EIIGSEHNFFAQLEYLTISWGINLKGVYP--NPLPFPKLKKIKVRGC  184 (238)
Q Consensus       140 ~~~~~~~~~~p~L~~L~L~~~~~L~~i~~--~~~~~~~L~~L~i~~C  184 (238)
                          ..+..+|+|++|++.+. .+++++.  ....+++|+.|++++-
T Consensus        59 ----~~~~~l~~L~~L~l~~N-~i~~~~~~~~l~~~~~L~~L~l~~N  100 (124)
T d1dcea3          59 ----DGVANLPRLQELLLCNN-RLQQSAAIQPLVSCPRLVLLNLQGN  100 (124)
T ss_dssp             ----GGGTTCSSCCEEECCSS-CCCSSSTTGGGGGCTTCCEEECTTS
T ss_pred             ----CccccccccCeEECCCC-ccCCCCCchhhcCCCCCCEEECCCC
Confidence                24567899999999764 3444432  2345788999998763

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=98.05  E-value=3.1e-06  Score=68.89  Aligned_cols=84  Identities=14%  Similarity=0.050  Sum_probs=50.9

Q ss_pred             hcceeEEEEeecCCCCCcc-cchhhcccCCeEEEeecCCceEEecccCccCcccccCCCCccEEEEecCCCCCcCc-ccc
Q 026434           33 VSITQSVGVYQCRSPPFNV-FHLAYMENLQELELEYCNLEEMKIDSTDEVKKLFQSGFRSLNTVHVFYCQKAKDLT-WLV  110 (238)
Q Consensus        33 ~~~L~~L~l~~c~~l~~~~-~~l~~l~~L~~L~i~~c~l~~i~~~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~-~~~  110 (238)
                      +++|++|++.+|..+...+ ..+.++++|++|+++++.+..+....        ...+.+|+.+++.++.....++ .+.
T Consensus        75 L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~--------~~~~~~L~~l~l~~N~~~~~~p~~l~  146 (313)
T d1ogqa_          75 LPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDF--------LSQIKTLVTLDFSYNALSGTLPPSIS  146 (313)
T ss_dssp             CTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGG--------GGGCTTCCEEECCSSEEESCCCGGGG
T ss_pred             Cccccccccccccccccccccccccccccchhhhcccccccccccc--------ccchhhhcccccccccccccCchhhc
Confidence            3577777777776554322 35677777788877777744332211        2345667777776654443333 456


Q ss_pred             cCCCccEEEEeccc
Q 026434          111 FVQNLKKLRIEFCD  124 (238)
Q Consensus       111 ~l~~L~~L~i~~C~  124 (238)
                      .+++|+++++.++.
T Consensus       147 ~l~~L~~l~l~~n~  160 (313)
T d1ogqa_         147 SLPNLVGITFDGNR  160 (313)
T ss_dssp             GCTTCCEEECCSSC
T ss_pred             cCcccceeeccccc
Confidence            77777777777653

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.04  E-value=6.8e-08  Score=74.48  Aligned_cols=105  Identities=15%  Similarity=0.159  Sum_probs=77.2

Q ss_pred             hcceeEEEEeecCCCCCcccchhhcccCCeEEEeecCCceEEecccCccCcccccCCCCccEEEEecCCCCCcCcccccC
Q 026434           33 VSITQSVGVYQCRSPPFNVFHLAYMENLQELELEYCNLEEMKIDSTDEVKKLFQSGFRSLNTVHVFYCQKAKDLTWLVFV  112 (238)
Q Consensus        33 ~~~L~~L~l~~c~~l~~~~~~l~~l~~L~~L~i~~c~l~~i~~~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~l  112 (238)
                      +.+|+.|++.++. +. .+..+..+++|+.|++++|.++.+..         ....+++|+.|+++++ +++.++.+..+
T Consensus        47 L~~L~~L~Ls~n~-I~-~i~~l~~l~~L~~L~Ls~N~i~~i~~---------~~~~~~~L~~L~l~~N-~i~~l~~~~~l  114 (198)
T d1m9la_          47 LKACKHLALSTNN-IE-KISSLSGMENLRILSLGRNLIKKIEN---------LDAVADTLEELWISYN-QIASLSGIEKL  114 (198)
T ss_dssp             TTTCCEEECSEEE-ES-CCCCHHHHTTCCEEECCEEEECSCSS---------HHHHHHHCCEEECSEE-ECCCHHHHHHH
T ss_pred             ccccceeECcccC-CC-CcccccCCccccChhhcccccccccc---------cccccccccccccccc-ccccccccccc
Confidence            3689999998874 33 35678899999999999998554421         1123567999999887 68888777889


Q ss_pred             CCccEEEEecccccceecccccccccccccccccccccccceeeccccc
Q 026434          113 QNLKKLRIEFCDDVEEIIGVDKLRDISEIIGSEHNFFAQLEYLTISWGI  161 (238)
Q Consensus       113 ~~L~~L~i~~C~~l~~l~~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~  161 (238)
                      ++|++|+++++ ++..+...           ..+..+|+|+.|++.+.+
T Consensus       115 ~~L~~L~L~~N-~i~~~~~~-----------~~l~~l~~L~~L~L~~N~  151 (198)
T d1m9la_         115 VNLRVLYMSNN-KITNWGEI-----------DKLAALDKLEDLLLAGNP  151 (198)
T ss_dssp             HHSSEEEESEE-ECCCHHHH-----------HHHTTTTTCSEEEECSSH
T ss_pred             ccccccccccc-hhcccccc-----------ccccCCCccceeecCCCc
Confidence            99999999886 34333110           245678999999998865

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.01  E-value=8.5e-06  Score=61.68  Aligned_cols=34  Identities=18%  Similarity=0.218  Sum_probs=14.7

Q ss_pred             cccccceeeccccccccccCCCC-CCCCCccEEeEc
Q 026434          148 FFAQLEYLTISWGINLKGVYPNP-LPFPKLKKIKVR  182 (238)
Q Consensus       148 ~~p~L~~L~L~~~~~L~~i~~~~-~~~~~L~~L~i~  182 (238)
                      .+++|++|+|++. .|+.+..+. ..+++|++|++.
T Consensus       100 ~l~~L~~L~L~~N-~l~~i~~~~f~~l~~L~~l~L~  134 (192)
T d1w8aa_         100 GLHQLKTLNLYDN-QISCVMPGSFEHLNSLTSLNLA  134 (192)
T ss_dssp             TCTTCCEEECCSS-CCCEECTTSSTTCTTCCEEECT
T ss_pred             CCCcccccccCCc-cccccCHHHhcCCccccccccc
Confidence            3444555554443 344444322 234444444443

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=97.83  E-value=0.00014  Score=58.90  Aligned_cols=15  Identities=13%  Similarity=-0.051  Sum_probs=9.1

Q ss_pred             ccCCCCccEEEEecC
Q 026434           86 QSGFRSLNTVHVFYC  100 (238)
Q Consensus        86 ~~~l~~L~~L~i~~C  100 (238)
                      ...++.|+.+.++++
T Consensus       200 ~~~l~~L~~l~l~~n  214 (353)
T d1jl5a_         200 LQNLPFLTTIYADNN  214 (353)
T ss_dssp             CTTCTTCCEEECCSS
T ss_pred             ccccccccccccccc
Confidence            345566677766654

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.82  E-value=4.7e-05  Score=57.39  Aligned_cols=107  Identities=13%  Similarity=0.116  Sum_probs=77.0

Q ss_pred             hcceeEEEEeecCCCCC-cccchhhcccCCeEEEeecCCceEEecccCccCcccccCCCCccEEEEecCCCCCcCcc--c
Q 026434           33 VSITQSVGVYQCRSPPF-NVFHLAYMENLQELELEYCNLEEMKIDSTDEVKKLFQSGFRSLNTVHVFYCQKAKDLTW--L  109 (238)
Q Consensus        33 ~~~L~~L~l~~c~~l~~-~~~~l~~l~~L~~L~i~~c~l~~i~~~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~--~  109 (238)
                      ..+++.|+|.+..--.. ....+.++++|++|+++++.+..+..+.        ...+++|+.|++++. +++.++.  +
T Consensus        28 p~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~--------~~~~~~L~~L~Ls~N-~l~~l~~~~F   98 (192)
T d1w8aa_          28 PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNA--------FEGASHIQELQLGEN-KIKEISNKMF   98 (192)
T ss_dssp             CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTT--------TTTCTTCCEEECCSC-CCCEECSSSS
T ss_pred             CCCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccc--------cccccccceeeeccc-cccccCHHHH
Confidence            36899999988642111 2345678899999999988854443222        245889999999887 7888763  5


Q ss_pred             ccCCCccEEEEecccccceecccccccccccccccccccccccceeeccccc
Q 026434          110 VFVQNLKKLRIEFCDDVEEIIGVDKLRDISEIIGSEHNFFAQLEYLTISWGI  161 (238)
Q Consensus       110 ~~l~~L~~L~i~~C~~l~~l~~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~  161 (238)
                      ..+++|++|++.+. ++..+.+            .....+++|++|+|.+-+
T Consensus        99 ~~l~~L~~L~L~~N-~l~~i~~------------~~f~~l~~L~~l~L~~N~  137 (192)
T d1w8aa_          99 LGLHQLKTLNLYDN-QISCVMP------------GSFEHLNSLTSLNLASNP  137 (192)
T ss_dssp             TTCTTCCEEECCSS-CCCEECT------------TSSTTCTTCCEEECTTCC
T ss_pred             hCCCcccccccCCc-cccccCH------------HHhcCCcccccccccccc
Confidence            68999999999886 5666642            345568899999997643

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.49  E-value=0.0002  Score=52.15  Aligned_cols=61  Identities=23%  Similarity=0.361  Sum_probs=30.1

Q ss_pred             hhhcccCCeEEEeecC-CceEEecccCccCcccccCCCCccEEEEecCCCCCcCcc--cccCCCccEEEEecc
Q 026434           54 LAYMENLQELELEYCN-LEEMKIDSTDEVKKLFQSGFRSLNTVHVFYCQKAKDLTW--LVFVQNLKKLRIEFC  123 (238)
Q Consensus        54 l~~l~~L~~L~i~~c~-l~~i~~~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~--~~~l~~L~~L~i~~C  123 (238)
                      +..+++|++|++.+.. ++.+..+..        ..+++|+.|++++. +++.++.  +..+++|++|++++.
T Consensus        27 l~~l~~l~~L~l~~n~~l~~i~~~~f--------~~l~~L~~L~Ls~N-~l~~i~~~~f~~l~~L~~L~Ls~N   90 (156)
T d2ifga3          27 LPGAENLTELYIENQQHLQHLELRDL--------RGLGELRNLTIVKS-GLRFVAPDAFHFTPRLSRLNLSFN   90 (156)
T ss_dssp             SCSCSCCSEEECCSCSSCCEECGGGS--------CSCCCCSEEECCSS-CCCEECTTGGGSCSCCCEEECCSS
T ss_pred             ccCccccCeeecCCCccccccCchhh--------ccccccCcceeecc-ccCCcccccccccccccceeccCC
Confidence            3444555666665554 554432211        23555566665554 4555432  344555555555543

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.23  E-value=0.00026  Score=51.51  Aligned_cols=82  Identities=13%  Similarity=0.114  Sum_probs=61.9

Q ss_pred             hcceeEEEEeecCCCCC-cccchhhcccCCeEEEeecCCceEEecccCccCcccccCCCCccEEEEecCCCCCcCcc-cc
Q 026434           33 VSITQSVGVYQCRSPPF-NVFHLAYMENLQELELEYCNLEEMKIDSTDEVKKLFQSGFRSLNTVHVFYCQKAKDLTW-LV  110 (238)
Q Consensus        33 ~~~L~~L~l~~c~~l~~-~~~~l~~l~~L~~L~i~~c~l~~i~~~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~-~~  110 (238)
                      .+++++|+|.+...++. ....+.++++|+.|+++++.+..|..+..        ..+++|+.|++++. +++.++. ..
T Consensus        30 l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f--------~~l~~L~~L~Ls~N-~l~~l~~~~~  100 (156)
T d2ifga3          30 AENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAF--------HFTPRLSRLNLSFN-ALESLSWKTV  100 (156)
T ss_dssp             CSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGG--------GSCSCCCEEECCSS-CCSCCCSTTT
T ss_pred             ccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccc--------cccccccceeccCC-CCcccChhhh
Confidence            36889999987766665 44567889999999999999877743322        45889999999886 6888764 23


Q ss_pred             cCCCccEEEEecc
Q 026434          111 FVQNLKKLRIEFC  123 (238)
Q Consensus       111 ~l~~L~~L~i~~C  123 (238)
                      ...+|++|++.+-
T Consensus       101 ~~~~l~~L~L~~N  113 (156)
T d2ifga3         101 QGLSLQELVLSGN  113 (156)
T ss_dssp             CSCCCCEEECCSS
T ss_pred             ccccccccccCCC
Confidence            3457899988763

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=97.11  E-value=0.002  Score=51.68  Aligned_cols=35  Identities=14%  Similarity=0.113  Sum_probs=17.2

Q ss_pred             ceeEEEEeecCCCCCcccchhhcccCCeEEEeecCCceE
Q 026434           35 ITQSVGVYQCRSPPFNVFHLAYMENLQELELEYCNLEEM   73 (238)
Q Consensus        35 ~L~~L~l~~c~~l~~~~~~l~~l~~L~~L~i~~c~l~~i   73 (238)
                      ++++|++.++. ++. ++.+  .++|++|+++++.++++
T Consensus        39 ~l~~LdLs~~~-L~~-lp~~--~~~L~~L~Ls~N~l~~l   73 (353)
T d1jl5a_          39 QAHELELNNLG-LSS-LPEL--PPHLESLVASCNSLTEL   73 (353)
T ss_dssp             TCSEEECTTSC-CSC-CCSC--CTTCSEEECCSSCCSSC
T ss_pred             CCCEEEeCCCC-CCC-CCCC--CCCCCEEECCCCCCccc
Confidence            45566665542 332 2322  25666666665444444

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=96.02  E-value=0.00065  Score=55.35  Aligned_cols=37  Identities=16%  Similarity=0.167  Sum_probs=18.0

Q ss_pred             ccccccceeeccccccccc-----cCC--CCCCCCCccEEeEcCc
Q 026434          147 NFFAQLEYLTISWGINLKG-----VYP--NPLPFPKLKKIKVRGC  184 (238)
Q Consensus       147 ~~~p~L~~L~L~~~~~L~~-----i~~--~~~~~~~L~~L~i~~C  184 (238)
                      ...++|++|.|++|. +.+     +..  .....++|++|+++++
T Consensus       240 ~~~~~L~~L~Ls~n~-i~~~g~~~l~~~l~~~~~~~L~~L~ls~N  283 (344)
T d2ca6a1         240 KSWPNLRELGLNDCL-LSARGAAAVVDAFSKLENIGLQTLRLQYN  283 (344)
T ss_dssp             GGCTTCCEEECTTCC-CCHHHHHHHHHHHHTCSSCCCCEEECCSS
T ss_pred             cccccchhhhhhcCc-cCchhhHHHHHHhhhccCCCCCEEECCCC
Confidence            345566666666553 221     111  0123456667776665

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=95.90  E-value=0.0024  Score=51.76  Aligned_cols=67  Identities=9%  Similarity=0.257  Sum_probs=37.9

Q ss_pred             ccCCCccEEEEecccccceecccccccccccccccccccccccceeecccccccc-----ccCCCCCCCCCccEEeEcCc
Q 026434          110 VFVQNLKKLRIEFCDDVEEIIGVDKLRDISEIIGSEHNFFAQLEYLTISWGINLK-----GVYPNPLPFPKLKKIKVRGC  184 (238)
Q Consensus       110 ~~l~~L~~L~i~~C~~l~~l~~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~-----~i~~~~~~~~~L~~L~i~~C  184 (238)
                      ...+.|++|.+.+|. +..    ......  .. ..+..+++|+.|+++++. +.     .+......+++|+.|++++|
T Consensus       183 ~~~~~L~~L~L~~n~-i~~----~g~~~~--l~-~~l~~~~~L~~L~Ls~N~-i~~~g~~~L~~~l~~~~~L~~L~Ls~n  253 (344)
T d2ca6a1         183 QSHRLLHTVKMVQNG-IRP----EGIEHL--LL-EGLAYCQELKVLDLQDNT-FTHLGSSALAIALKSWPNLRELGLNDC  253 (344)
T ss_dssp             HHCTTCCEEECCSSC-CCH----HHHHHH--HH-TTGGGCTTCCEEECCSSC-CHHHHHHHHHHHGGGCTTCCEEECTTC
T ss_pred             hhhhhhccccccccc-ccc----cccccc--hh-hhhcchhhhccccccccc-ccccccccccccccccccchhhhhhcC
Confidence            457788888888773 211    000000  00 234567888888887653 21     12112335788889998888


Q ss_pred             c
Q 026434          185 R  185 (238)
Q Consensus       185 ~  185 (238)
                      .
T Consensus       254 ~  254 (344)
T d2ca6a1         254 L  254 (344)
T ss_dssp             C
T ss_pred             c
Confidence            4

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.96  E-value=0.0025  Score=52.84  Aligned_cols=108  Identities=16%  Similarity=0.136  Sum_probs=66.4

Q ss_pred             CCcceeEEeee--hHHHHhhhcCchhhcceeEEEEeecCCCCC-cc----cchhhcccCCeEEEeecCCceEEecccCcc
Q 026434            9 HLKVLSWSFGS--SLAVQKFLKYPKLVSITQSVGVYQCRSPPF-NV----FHLAYMENLQELELEYCNLEEMKIDSTDEV   81 (238)
Q Consensus         9 ~L~~L~i~~~~--~~~l~~l~~~~~l~~~L~~L~l~~c~~l~~-~~----~~l~~l~~L~~L~i~~c~l~~i~~~~~~~~   81 (238)
                      +|+.|+|+...  ...+..++   +..++++.|++.+|. +.. .+    ..+.++++|++|++++|.+....+..... 
T Consensus         3 ~l~~ld~~~~~i~~~~~~~l~---~~l~~l~~L~L~~~~-i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~-   77 (460)
T d1z7xw1           3 DIQSLDIQCEELSDARWAELL---PLLQQCQVVRLDDCG-LTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQ-   77 (460)
T ss_dssp             EEEEEEEESCCCCHHHHHHHH---HHHTTCSEEEEESSC-CCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHH-
T ss_pred             CCCEEEeeCCcCChHHHHHHH---HhCCCCCEEEeCCCC-CCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHH-
Confidence            47888886322  22233332   334789999999994 443 22    13567899999999988743211100000 


Q ss_pred             CcccccCCCCccEEEEecCCCCCcCc------ccccCCCccEEEEeccc
Q 026434           82 KKLFQSGFRSLNTVHVFYCQKAKDLT------WLVFVQNLKKLRIEFCD  124 (238)
Q Consensus        82 ~~~~~~~l~~L~~L~i~~C~~L~~l~------~~~~l~~L~~L~i~~C~  124 (238)
                        .-.....+|+.|++++| ++++..      .+..+++|++|.+.++.
T Consensus        78 --~l~~~~~~L~~L~L~~n-~it~~~~~~l~~~l~~~~~L~~L~L~~N~  123 (460)
T d1z7xw1          78 --GLQTPSCKIQKLSLQNC-CLTGAGCGVLSSTLRTLPTLQELHLSDNL  123 (460)
T ss_dssp             --TTCSTTCCCCEEECTTS-CCBGGGHHHHHHHTTSCTTCCEEECCSSB
T ss_pred             --HHhcCCCCCCEEECCCC-Cccccccccccchhhcccccccccccccc
Confidence              00012357999999999 476632      24568999999998863

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.47  E-value=0.0078  Score=49.68  Aligned_cols=112  Identities=18%  Similarity=0.160  Sum_probs=68.0

Q ss_pred             cceeEEEEeecCCCCC-cccc-hhhcccCCeEEEeecCCceEEecccCccCcccccCCCCccEEEEecCCCCCcCc--cc
Q 026434           34 SITQSVGVYQCRSPPF-NVFH-LAYMENLQELELEYCNLEEMKIDSTDEVKKLFQSGFRSLNTVHVFYCQKAKDLT--WL  109 (238)
Q Consensus        34 ~~L~~L~l~~c~~l~~-~~~~-l~~l~~L~~L~i~~c~l~~i~~~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~--~~  109 (238)
                      .+|+.|+| .|.++.. .+.. ++.+++++.|++.+|.+.........    ......++|+.|+++++ ++.+..  .+
T Consensus         2 ~~l~~ld~-~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~----~~L~~~~~L~~LdLs~N-~i~~~~~~~l   75 (460)
T d1z7xw1           2 LDIQSLDI-QCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDIS----SALRVNPALAELNLRSN-ELGDVGVHCV   75 (460)
T ss_dssp             EEEEEEEE-ESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHH----HHHHTCTTCCEEECTTC-CCHHHHHHHH
T ss_pred             CCCCEEEe-eCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHH----HHHhcCCCCCEEECcCC-cCChHHHHHH
Confidence            36889999 6666665 4444 57789999999999984321111000    11245789999999887 465421  11


Q ss_pred             ----c-cCCCccEEEEecccccceecccccccccccccccccccccccceeecccc
Q 026434          110 ----V-FVQNLKKLRIEFCDDVEEIIGVDKLRDISEIIGSEHNFFAQLEYLTISWG  160 (238)
Q Consensus       110 ----~-~l~~L~~L~i~~C~~l~~l~~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~  160 (238)
                          . ...+|++|++.+|. +.+...    ....    ..+...++|++|.+.+.
T Consensus        76 ~~~l~~~~~~L~~L~L~~n~-it~~~~----~~l~----~~l~~~~~L~~L~L~~N  122 (460)
T d1z7xw1          76 LQGLQTPSCKIQKLSLQNCC-LTGAGC----GVLS----STLRTLPTLQELHLSDN  122 (460)
T ss_dssp             HHTTCSTTCCCCEEECTTSC-CBGGGH----HHHH----HHTTSCTTCCEEECCSS
T ss_pred             HHHHhcCCCCCCEEECCCCC-cccccc----cccc----chhhccccccccccccc
Confidence                1 23579999999983 432200    0000    23345678888888754

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.05  E-value=0.003  Score=45.79  Aligned_cols=13  Identities=23%  Similarity=0.302  Sum_probs=6.3

Q ss_pred             cccCCeEEEeecC
Q 026434           57 MENLQELELEYCN   69 (238)
Q Consensus        57 l~~L~~L~i~~c~   69 (238)
                      +++|+.|+++++.
T Consensus        64 ~~~L~~L~Ls~N~   76 (162)
T d1koha1          64 IPELLSLNLSNNR   76 (162)
T ss_dssp             CTTCCCCCCCSSC
T ss_pred             CCCCCEeeCCCcc
Confidence            4444555544444

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.85  E-value=0.025  Score=40.65  Aligned_cols=60  Identities=15%  Similarity=-0.000  Sum_probs=39.9

Q ss_pred             CCCCccEEEEecCCCCCcCcc----cccCCCccEEEEecccccceecccccccccccccccccccccccceeeccccc
Q 026434           88 GFRSLNTVHVFYCQKAKDLTW----LVFVQNLKKLRIEFCDDVEEIIGVDKLRDISEIIGSEHNFFAQLEYLTISWGI  161 (238)
Q Consensus        88 ~l~~L~~L~i~~C~~L~~l~~----~~~l~~L~~L~i~~C~~l~~l~~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~  161 (238)
                      .+++|+.|++++. +++++..    +..+++|+.|++++. .++++..            .......+|+.|.+.+.|
T Consensus        63 ~~~~L~~L~Ls~N-~i~~l~~~~~~~~~l~~L~~L~Ls~N-~i~~l~~------------l~~l~~~~L~~L~L~~Np  126 (162)
T d1koha1          63 NIPELLSLNLSNN-RLYRLDDMSSIVQKAPNLKILNLSGN-ELKSERE------------LDKIKGLKLEELWLDGNS  126 (162)
T ss_dssp             HCTTCCCCCCCSS-CCCCCSGGGTHHHHSTTCCCCCCTTS-CCCCGGG------------HHHHTTCCCSSCCCTTST
T ss_pred             hCCCCCEeeCCCc-cccCCchhHHHHhhCCcccccccccC-ccccchh------------hhhhhccccceeecCCCC
Confidence            4788999999987 6777653    346899999999875 4444311            011234568888887654

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=86.88  E-value=0.066  Score=38.46  Aligned_cols=85  Identities=7%  Similarity=0.010  Sum_probs=38.9

Q ss_pred             cceeEEEEeecCCCCC-ccc----chhhcccCCeEEEeecCCceEEecccCccCcccccCCCCccEEEEecCCCCCcCc-
Q 026434           34 SITQSVGVYQCRSPPF-NVF----HLAYMENLQELELEYCNLEEMKIDSTDEVKKLFQSGFRSLNTVHVFYCQKAKDLT-  107 (238)
Q Consensus        34 ~~L~~L~l~~c~~l~~-~~~----~l~~l~~L~~L~i~~c~l~~i~~~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~-  107 (238)
                      +.|+.|+|.++..+.. .+.    .+...++|+.|++++|.+..-.+....    ......+.|+.|++++| .+.+-. 
T Consensus        15 ~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la----~~L~~n~~L~~L~L~~n-~i~~~g~   89 (167)
T d1pgva_          15 TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLI----ELIETSPSLRVLNVESN-FLTPELL   89 (167)
T ss_dssp             SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHH----HHHHHCSSCCEEECCSS-BCCHHHH
T ss_pred             CCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHh----hhhhhcccccceeeehh-hcchHHH
Confidence            3567777766554433 111    234445666776666653211000000    00112345666666666 343310 


Q ss_pred             -----ccccCCCccEEEEecc
Q 026434          108 -----WLVFVQNLKKLRIEFC  123 (238)
Q Consensus       108 -----~~~~l~~L~~L~i~~C  123 (238)
                           .+...++|++|++.++
T Consensus        90 ~~l~~aL~~n~sL~~L~l~~n  110 (167)
T d1pgva_          90 ARLLRSTLVTQSIVEFKADNQ  110 (167)
T ss_dssp             HHHHHHTTTTCCCSEEECCCC
T ss_pred             HHHHHHHHhCCcCCEEECCCC
Confidence                 1234455666666543