Citrus Sinensis ID: 026485
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 238 | 2.2.26 [Sep-21-2011] | |||||||
| E2IUA9 | 765 | Lupeol synthase OS=Kalanc | N/A | no | 0.983 | 0.305 | 0.709 | 1e-104 | |
| A8CDT2 | 759 | Beta-amyrin synthase OS=B | N/A | no | 0.987 | 0.309 | 0.702 | 1e-104 | |
| A8C980 | 759 | Germanicol synthase OS=Rh | N/A | no | 0.987 | 0.309 | 0.693 | 1e-101 | |
| Q9MB42 | 765 | Beta-amyrin synthase OS=G | N/A | no | 0.987 | 0.307 | 0.685 | 1e-100 | |
| Q9LRH8 | 758 | Beta-amyrin synthase OS=P | N/A | no | 0.987 | 0.310 | 0.689 | 1e-100 | |
| O82140 | 763 | Beta-Amyrin Synthase 1 OS | N/A | no | 0.995 | 0.310 | 0.675 | 1e-100 | |
| Q8W3Z1 | 779 | Beta-amyrin synthase OS=B | N/A | no | 0.987 | 0.301 | 0.676 | 1e-100 | |
| E2IUA6 | 779 | Taraxerol synthase OS=Kal | N/A | no | 0.987 | 0.301 | 0.676 | 2e-99 | |
| E2IUA8 | 767 | Friedelin synthase OS=Kal | N/A | no | 0.962 | 0.298 | 0.694 | 7e-99 | |
| E2IUA7 | 767 | Glutinol synthase OS=Kala | N/A | no | 0.962 | 0.298 | 0.681 | 4e-98 |
| >sp|E2IUA9|LUPS_KALDA Lupeol synthase OS=Kalanchoe daigremontiana PE=1 SV=1 | Back alignment and function desciption |
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Score = 377 bits (968), Expect = e-104, Method: Compositional matrix adjust.
Identities = 166/234 (70%), Positives = 199/234 (85%)
Query: 1 MQSETGGVPAWEPTGAPSWLELLNPIEFLDEVIIEYDKVECTASALKAMTLFKKLYPKHR 60
+QS+ GG+PAWEP GAP WLELLNP EF + ++IE++ VECT+SA++A+ LFKKLYP HR
Sbjct: 524 LQSQNGGLPAWEPAGAPEWLELLNPTEFFENIVIEHEYVECTSSAVQALVLFKKLYPLHR 583
Query: 61 TKEVKNFIAKATKFIEDIQKSDGSWYGSWGICFTYAAWFAISGLVAAKKTYSNCLAIRKA 120
KEV+ FI K++EDIQ DGSWYG+WG+CFTY AWFA+ GL AA KTY+NC A+RK
Sbjct: 584 RKEVERFITNGAKYLEDIQMPDGSWYGNWGVCFTYGAWFALEGLSAAGKTYNNCAAVRKG 643
Query: 121 TDFLLKIQCEDGGWGESYRSCPNKKYIPLDGNRSNLVQTAWAMMSLIHAGQMERDPTPLH 180
DFLL IQ EDGGWGESY+SCP+KKY+PL+ NRSNLVQT+WA+M LI+AGQ +RDPTPLH
Sbjct: 644 VDFLLNIQLEDGGWGESYQSCPDKKYVPLEDNRSNLVQTSWALMGLIYAGQADRDPTPLH 703
Query: 181 RAAKLLINSQLEDGDFPQQELTGVFMENCMLHYPIYRNIFPMWALAEYRSRLLL 234
RAA+LLINSQLEDGDFPQQE+TGVF NCMLHY YRNIFP+WALAEYR ++ L
Sbjct: 704 RAAQLLINSQLEDGDFPQQEITGVFQRNCMLHYAAYRNIFPLWALAEYRRQIQL 757
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Oxidosqualene cyclase that generates lupeol, a triterpenoid product. Lupeol is probably required to coat the leaf exterior as a defense compound against pathogens or herbivores. Kalanchoe daigremontiana (taxid: 23013) EC: 5EC: .EC: 4EC: .EC: 9EC: 9EC: .EC: 4EC: 1 |
| >sp|A8CDT2|BAS_BRUGY Beta-amyrin synthase OS=Bruguiera gymnorhiza GN=BAS PE=1 SV=1 | Back alignment and function description |
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| >sp|A8C980|GERS_RHISY Germanicol synthase OS=Rhizophora stylosa GN=M1 PE=1 SV=1 | Back alignment and function description |
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| >sp|Q9MB42|BAMS_GLYGL Beta-amyrin synthase OS=Glycyrrhiza glabra GN=GgbAS1 PE=1 SV=1 | Back alignment and function description |
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| >sp|Q9LRH8|BAMS_PEA Beta-amyrin synthase OS=Pisum sativum GN=OSCPSY PE=2 SV=1 | Back alignment and function description |
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| >sp|O82140|BAMS1_PANGI Beta-Amyrin Synthase 1 OS=Panax ginseng GN=OSCPNY1 PE=1 SV=1 | Back alignment and function description |
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| >sp|Q8W3Z1|BAMS_BETPL Beta-amyrin synthase OS=Betula platyphylla GN=OSCBPY PE=1 SV=1 | Back alignment and function description |
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| >sp|E2IUA6|TARS_KALDA Taraxerol synthase OS=Kalanchoe daigremontiana PE=1 SV=1 | Back alignment and function description |
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| >sp|E2IUA8|FRIES_KALDA Friedelin synthase OS=Kalanchoe daigremontiana PE=1 SV=1 | Back alignment and function description |
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| >sp|E2IUA7|GLUTS_KALDA Glutinol synthase OS=Kalanchoe daigremontiana PE=1 SV=1 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 238 | ||||||
| 403399452 | 765 | RecName: Full=Lupeol synthase; Short=KdL | 0.983 | 0.305 | 0.709 | 1e-102 | |
| 353678016 | 759 | RecName: Full=Beta-amyrin synthase; Shor | 0.987 | 0.309 | 0.702 | 1e-102 | |
| 73991374 | 762 | beta-amyrin synthase [Euphorbia tirucall | 0.987 | 0.308 | 0.689 | 1e-101 | |
| 300431227 | 763 | beta-amyrin synthase [Aralia elata] | 0.995 | 0.310 | 0.691 | 1e-100 | |
| 357467673 | 762 | Beta-amyrin synthase [Medicago truncatul | 0.987 | 0.308 | 0.697 | 1e-100 | |
| 392621787 | 763 | lupeol synthase [Eleutherococcus trifoli | 0.995 | 0.310 | 0.687 | 1e-100 | |
| 224122726 | 762 | predicted protein [Populus trichocarpa] | 0.987 | 0.308 | 0.697 | 1e-100 | |
| 357513599 | 472 | Beta-amyrin synthase [Medicago truncatul | 1.0 | 0.504 | 0.693 | 1e-99 | |
| 28194504 | 762 | beta-amyrin synthase [Medicago truncatul | 0.987 | 0.308 | 0.693 | 1e-99 | |
| 297735720 | 846 | unnamed protein product [Vitis vinifera] | 0.987 | 0.277 | 0.702 | 2e-99 |
| >gi|403399452|sp|E2IUA9.1|LUPS_KALDA RecName: Full=Lupeol synthase; Short=KdLUS gi|300807980|gb|ADK35126.1| lupeol synthase [Kalanchoe daigremontiana] | Back alignment and taxonomy information |
|---|
Score = 377 bits (968), Expect = e-102, Method: Compositional matrix adjust.
Identities = 166/234 (70%), Positives = 199/234 (85%)
Query: 1 MQSETGGVPAWEPTGAPSWLELLNPIEFLDEVIIEYDKVECTASALKAMTLFKKLYPKHR 60
+QS+ GG+PAWEP GAP WLELLNP EF + ++IE++ VECT+SA++A+ LFKKLYP HR
Sbjct: 524 LQSQNGGLPAWEPAGAPEWLELLNPTEFFENIVIEHEYVECTSSAVQALVLFKKLYPLHR 583
Query: 61 TKEVKNFIAKATKFIEDIQKSDGSWYGSWGICFTYAAWFAISGLVAAKKTYSNCLAIRKA 120
KEV+ FI K++EDIQ DGSWYG+WG+CFTY AWFA+ GL AA KTY+NC A+RK
Sbjct: 584 RKEVERFITNGAKYLEDIQMPDGSWYGNWGVCFTYGAWFALEGLSAAGKTYNNCAAVRKG 643
Query: 121 TDFLLKIQCEDGGWGESYRSCPNKKYIPLDGNRSNLVQTAWAMMSLIHAGQMERDPTPLH 180
DFLL IQ EDGGWGESY+SCP+KKY+PL+ NRSNLVQT+WA+M LI+AGQ +RDPTPLH
Sbjct: 644 VDFLLNIQLEDGGWGESYQSCPDKKYVPLEDNRSNLVQTSWALMGLIYAGQADRDPTPLH 703
Query: 181 RAAKLLINSQLEDGDFPQQELTGVFMENCMLHYPIYRNIFPMWALAEYRSRLLL 234
RAA+LLINSQLEDGDFPQQE+TGVF NCMLHY YRNIFP+WALAEYR ++ L
Sbjct: 704 RAAQLLINSQLEDGDFPQQEITGVFQRNCMLHYAAYRNIFPLWALAEYRRQIQL 757
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Source: Kalanchoe daigremontiana Species: Kalanchoe daigremontiana Genus: Kalanchoe Family: Crassulaceae Order: Saxifragales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|353678016|sp|A8CDT2.1|BAS_BRUGY RecName: Full=Beta-amyrin synthase; Short=BgbAS gi|157679391|dbj|BAF80443.1| beta amyrin synthase [Bruguiera gymnorhiza] | Back alignment and taxonomy information |
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| >gi|73991374|dbj|BAE43642.1| beta-amyrin synthase [Euphorbia tirucalli] | Back alignment and taxonomy information |
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| >gi|300431227|gb|ADK12003.1| beta-amyrin synthase [Aralia elata] | Back alignment and taxonomy information |
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| >gi|357467673|ref|XP_003604121.1| Beta-amyrin synthase [Medicago truncatula] gi|27475608|emb|CAD23247.1| beta-amyrin synthase [Medicago truncatula] gi|355505176|gb|AES86318.1| Beta-amyrin synthase [Medicago truncatula] | Back alignment and taxonomy information |
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| >gi|392621787|gb|AFM82492.1| lupeol synthase [Eleutherococcus trifoliatus] | Back alignment and taxonomy information |
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| >gi|224122726|ref|XP_002330453.1| predicted protein [Populus trichocarpa] gi|222871865|gb|EEF08996.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|357513599|ref|XP_003627088.1| Beta-amyrin synthase [Medicago truncatula] gi|355521110|gb|AET01564.1| Beta-amyrin synthase [Medicago truncatula] | Back alignment and taxonomy information |
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| >gi|28194504|gb|AAO33578.1|AF478453_1 beta-amyrin synthase [Medicago truncatula] | Back alignment and taxonomy information |
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| >gi|297735720|emb|CBI18407.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 238 | ||||||
| UNIPROTKB|E2IUA9 | 765 | E2IUA9 "Lupeol synthase" [Kala | 0.983 | 0.305 | 0.709 | 9.4e-98 | |
| UNIPROTKB|A8CDT2 | 759 | BAS "Beta-amyrin synthase" [Br | 0.987 | 0.309 | 0.702 | 1.5e-97 | |
| UNIPROTKB|Q8W3Z1 | 779 | OSCBPY "Beta-amyrin synthase" | 0.987 | 0.301 | 0.676 | 3e-94 | |
| UNIPROTKB|E2IUA6 | 779 | E2IUA6 "Taraxerol synthase" [K | 0.987 | 0.301 | 0.676 | 3.4e-93 | |
| UNIPROTKB|E2IUA8 | 767 | E2IUA8 "Friedelin synthase" [K | 0.962 | 0.298 | 0.694 | 4.3e-93 | |
| UNIPROTKB|E2IUA7 | 767 | E2IUA7 "Glutinol synthase" [Ka | 0.962 | 0.298 | 0.681 | 2.4e-92 | |
| UNIPROTKB|Q2XPU7 | 769 | Q2XPU7 "Lupeol synthase" [Rici | 0.987 | 0.305 | 0.659 | 1.2e-90 | |
| UNIPROTKB|Q9LRH7 | 764 | OSCPSM "Mixed-amyrin synthase" | 0.983 | 0.306 | 0.679 | 1.9e-90 | |
| TAIR|locus:504956092 | 769 | CAMS1 "AT1G78955" [Arabidopsis | 0.987 | 0.305 | 0.659 | 8.3e-90 | |
| UNIPROTKB|F8WQD0 | 761 | SHS1 "Shionone synthase" [Aste | 0.978 | 0.306 | 0.639 | 4.6e-89 |
| UNIPROTKB|E2IUA9 E2IUA9 "Lupeol synthase" [Kalanchoe daigremontiana (taxid:23013)] | Back alignment and assigned GO terms |
|---|
Score = 971 (346.9 bits), Expect = 9.4e-98, P = 9.4e-98
Identities = 166/234 (70%), Positives = 199/234 (85%)
Query: 1 MQSETGGVPAWEPTGAPSWLELLNPIEFLDEVIIEYDKVECTASALKAMTLFKKLYPKHR 60
+QS+ GG+PAWEP GAP WLELLNP EF + ++IE++ VECT+SA++A+ LFKKLYP HR
Sbjct: 524 LQSQNGGLPAWEPAGAPEWLELLNPTEFFENIVIEHEYVECTSSAVQALVLFKKLYPLHR 583
Query: 61 TKEVKNFIAKATKFIEDIQKSDGSWYGSWGICFTYAAWFAISGLVAAKKTYSNCLAIRKA 120
KEV+ FI K++EDIQ DGSWYG+WG+CFTY AWFA+ GL AA KTY+NC A+RK
Sbjct: 584 RKEVERFITNGAKYLEDIQMPDGSWYGNWGVCFTYGAWFALEGLSAAGKTYNNCAAVRKG 643
Query: 121 TDFLLKIQCEDGGWGESYRSCPNKKYIPLDGNRSNLVQTAWAMMSLIHAGQMERDPTPLH 180
DFLL IQ EDGGWGESY+SCP+KKY+PL+ NRSNLVQT+WA+M LI+AGQ +RDPTPLH
Sbjct: 644 VDFLLNIQLEDGGWGESYQSCPDKKYVPLEDNRSNLVQTSWALMGLIYAGQADRDPTPLH 703
Query: 181 RAAKLLINSQLEDGDFPQQELTGVFMENCMLHYPIYRNIFPMWALAEYRSRLLL 234
RAA+LLINSQLEDGDFPQQE+TGVF NCMLHY YRNIFP+WALAEYR ++ L
Sbjct: 704 RAAQLLINSQLEDGDFPQQEITGVFQRNCMLHYAAYRNIFPLWALAEYRRQIQL 757
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| UNIPROTKB|A8CDT2 BAS "Beta-amyrin synthase" [Bruguiera gymnorhiza (taxid:39984)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q8W3Z1 OSCBPY "Beta-amyrin synthase" [Betula platyphylla (taxid:78630)] | Back alignment and assigned GO terms |
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| UNIPROTKB|E2IUA6 E2IUA6 "Taraxerol synthase" [Kalanchoe daigremontiana (taxid:23013)] | Back alignment and assigned GO terms |
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| UNIPROTKB|E2IUA8 E2IUA8 "Friedelin synthase" [Kalanchoe daigremontiana (taxid:23013)] | Back alignment and assigned GO terms |
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| UNIPROTKB|E2IUA7 E2IUA7 "Glutinol synthase" [Kalanchoe daigremontiana (taxid:23013)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q2XPU7 Q2XPU7 "Lupeol synthase" [Ricinus communis (taxid:3988)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q9LRH7 OSCPSM "Mixed-amyrin synthase" [Pisum sativum (taxid:3888)] | Back alignment and assigned GO terms |
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| TAIR|locus:504956092 CAMS1 "AT1G78955" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| UNIPROTKB|F8WQD0 SHS1 "Shionone synthase" [Aster tataricus (taxid:588669)] | Back alignment and assigned GO terms |
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 5.4.99 | 0.691 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | fgenesh4_pg.C_scaffold_135000058 | hypothetical protein (762 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
 | estExt_fgenesh4_pg.C_LG_IV1345 | • | 0.424 | ||||||||
 | estExt_fgenesh4_pm.C_LG_IX0217 | • | 0.412 |
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 238 | |||
| PLN02993 | 763 | PLN02993, PLN02993, lupeol synthase | 1e-130 | |
| PLN03012 | 759 | PLN03012, PLN03012, Camelliol C synthase | 1e-124 | |
| cd02892 | 634 | cd02892, SQCY_1, Squalene cyclase (SQCY) domain su | 1e-116 | |
| cd02889 | 348 | cd02889, SQCY, Squalene cyclase (SQCY) domain; fou | 1e-108 | |
| TIGR01787 | 621 | TIGR01787, squalene_cyclas, squalene/oxidosqualene | 9e-89 | |
| TIGR03463 | 634 | TIGR03463, osq_cycl, 2,3-oxidosqualene cyclase | 2e-57 | |
| COG1657 | 517 | COG1657, SqhC, Squalene cyclase [Lipid metabolism] | 6e-35 | |
| cd00688 | 300 | cd00688, ISOPREN_C2_like, This group contains clas | 1e-32 | |
| TIGR01507 | 635 | TIGR01507, hopene_cyclase, squalene-hopene cyclase | 2e-26 | |
| pfam13249 | 112 | pfam13249, Prenyltrans_2, Prenyltransferase-like | 6e-13 | |
| TIGR04277 | 624 | TIGR04277, squa_tetra_cyc, squalene--tetrahymanol | 1e-12 | |
| cd00688 | 300 | cd00688, ISOPREN_C2_like, This group contains clas | 1e-10 | |
| cd00688 | 300 | cd00688, ISOPREN_C2_like, This group contains clas | 1e-09 | |
| pfam13243 | 109 | pfam13243, Prenyltrans_1, Prenyltransferase-like | 2e-09 | |
| pfam13249 | 112 | pfam13249, Prenyltrans_2, Prenyltransferase-like | 1e-08 | |
| cd02889 | 348 | cd02889, SQCY, Squalene cyclase (SQCY) domain; fou | 1e-06 | |
| pfam00432 | 44 | pfam00432, Prenyltrans, Prenyltransferase and squa | 1e-05 | |
| pfam13243 | 109 | pfam13243, Prenyltrans_1, Prenyltransferase-like | 5e-05 | |
| cd02889 | 348 | cd02889, SQCY, Squalene cyclase (SQCY) domain; fou | 2e-04 | |
| pfam00432 | 44 | pfam00432, Prenyltrans, Prenyltransferase and squa | 2e-04 | |
| cd02891 | 282 | cd02891, A2M_like, Proteins similar to alpha2-macr | 0.002 |
| >gnl|CDD|215537 PLN02993, PLN02993, lupeol synthase | Back alignment and domain information |
|---|
Score = 384 bits (987), Expect = e-130
Identities = 154/234 (65%), Positives = 181/234 (77%)
Query: 1 MQSETGGVPAWEPTGAPSWLELLNPIEFLDEVIIEYDKVECTASALKAMTLFKKLYPKHR 60
+QSE GGV AWEP A WLELLNP +F ++E + VECT++ ++A+ LFK+LYP HR
Sbjct: 525 LQSENGGVTAWEPVRAYKWLELLNPTDFFANTMVEREYVECTSAVIQALVLFKQLYPDHR 584
Query: 61 TKEVKNFIAKATKFIEDIQKSDGSWYGSWGICFTYAAWFAISGLVAAKKTYSNCLAIRKA 120
TKE+ I KA +FIE Q DGSWYG+WGICF YA WFA+ GL AA KTY++CLA+RK
Sbjct: 585 TKEIIKSIEKAVQFIESKQTPDGSWYGNWGICFIYATWFALGGLAAAGKTYNDCLAMRKG 644
Query: 121 TDFLLKIQCEDGGWGESYRSCPNKKYIPLDGNRSNLVQTAWAMMSLIHAGQMERDPTPLH 180
FLL IQ +DGGWGESY SCP ++YIPL+GNRSNLVQTAWAMM LIHAGQ ERD PLH
Sbjct: 645 VHFLLTIQRDDGGWGESYLSCPEQRYIPLEGNRSNLVQTAWAMMGLIHAGQAERDLIPLH 704
Query: 181 RAAKLLINSQLEDGDFPQQELTGVFMENCMLHYPIYRNIFPMWALAEYRSRLLL 234
RAAKL+I SQLE+GDFPQQE+ G FM CMLHY YRN FP+WALAEYR +
Sbjct: 705 RAAKLIITSQLENGDFPQQEILGAFMNTCMLHYATYRNTFPLWALAEYRKAAFI 758
|
Length = 763 |
| >gnl|CDD|166653 PLN03012, PLN03012, Camelliol C synthase | Back alignment and domain information |
|---|
| >gnl|CDD|239222 cd02892, SQCY_1, Squalene cyclase (SQCY) domain subgroup 1; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold | Back alignment and domain information |
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| >gnl|CDD|239219 cd02889, SQCY, Squalene cyclase (SQCY) domain; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold | Back alignment and domain information |
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| >gnl|CDD|233578 TIGR01787, squalene_cyclas, squalene/oxidosqualene cyclases | Back alignment and domain information |
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| >gnl|CDD|234220 TIGR03463, osq_cycl, 2,3-oxidosqualene cyclase | Back alignment and domain information |
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| >gnl|CDD|224571 COG1657, SqhC, Squalene cyclase [Lipid metabolism] | Back alignment and domain information |
|---|
| >gnl|CDD|238362 cd00688, ISOPREN_C2_like, This group contains class II terpene cyclases, protein prenyltransferases beta subunit, two broadly specific proteinase inhibitors alpha2-macroglobulin (alpha (2)-M) and pregnancy zone protein (PZP) and, the C3 C4 and C5 components of vertebrate complement | Back alignment and domain information |
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| >gnl|CDD|233442 TIGR01507, hopene_cyclase, squalene-hopene cyclase | Back alignment and domain information |
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| >gnl|CDD|222007 pfam13249, Prenyltrans_2, Prenyltransferase-like | Back alignment and domain information |
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| >gnl|CDD|212000 TIGR04277, squa_tetra_cyc, squalene--tetrahymanol cyclase | Back alignment and domain information |
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| >gnl|CDD|238362 cd00688, ISOPREN_C2_like, This group contains class II terpene cyclases, protein prenyltransferases beta subunit, two broadly specific proteinase inhibitors alpha2-macroglobulin (alpha (2)-M) and pregnancy zone protein (PZP) and, the C3 C4 and C5 components of vertebrate complement | Back alignment and domain information |
|---|
| >gnl|CDD|238362 cd00688, ISOPREN_C2_like, This group contains class II terpene cyclases, protein prenyltransferases beta subunit, two broadly specific proteinase inhibitors alpha2-macroglobulin (alpha (2)-M) and pregnancy zone protein (PZP) and, the C3 C4 and C5 components of vertebrate complement | Back alignment and domain information |
|---|
| >gnl|CDD|205423 pfam13243, Prenyltrans_1, Prenyltransferase-like | Back alignment and domain information |
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| >gnl|CDD|222007 pfam13249, Prenyltrans_2, Prenyltransferase-like | Back alignment and domain information |
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| >gnl|CDD|239219 cd02889, SQCY, Squalene cyclase (SQCY) domain; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold | Back alignment and domain information |
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| >gnl|CDD|109488 pfam00432, Prenyltrans, Prenyltransferase and squalene oxidase repeat | Back alignment and domain information |
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| >gnl|CDD|205423 pfam13243, Prenyltrans_1, Prenyltransferase-like | Back alignment and domain information |
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| >gnl|CDD|239219 cd02889, SQCY, Squalene cyclase (SQCY) domain; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold | Back alignment and domain information |
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| >gnl|CDD|109488 pfam00432, Prenyltrans, Prenyltransferase and squalene oxidase repeat | Back alignment and domain information |
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| >gnl|CDD|239221 cd02891, A2M_like, Proteins similar to alpha2-macroglobulin (alpha (2)-M) | Back alignment and domain information |
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Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 238 | |||
| PLN03012 | 759 | Camelliol C synthase | 100.0 | |
| PLN02993 | 763 | lupeol synthase | 100.0 | |
| TIGR03463 | 634 | osq_cycl 2,3-oxidosqualene cyclase. This model ide | 100.0 | |
| TIGR01787 | 621 | squalene_cyclas squalene/oxidosqualene cyclases. T | 100.0 | |
| TIGR01507 | 635 | hopene_cyclase squalene-hopene cyclase. SHC is an | 100.0 | |
| KOG0497 | 760 | consensus Oxidosqualene-lanosterol cyclase and rel | 100.0 | |
| cd02892 | 634 | SQCY_1 Squalene cyclase (SQCY) domain subgroup 1; | 100.0 | |
| cd02889 | 348 | SQCY Squalene cyclase (SQCY) domain; found in clas | 100.0 | |
| PLN03012 | 759 | Camelliol C synthase | 99.95 | |
| PLN02993 | 763 | lupeol synthase | 99.95 | |
| TIGR03463 | 634 | osq_cycl 2,3-oxidosqualene cyclase. This model ide | 99.93 | |
| cd02897 | 292 | A2M_2 Proteins similar to alpha2-macroglobulin (al | 99.93 | |
| cd02896 | 297 | complement_C3_C4_C5 Proteins similar to C3, C4 and | 99.92 | |
| COG1657 | 517 | SqhC Squalene cyclase [Lipid metabolism] | 99.92 | |
| TIGR01507 | 635 | hopene_cyclase squalene-hopene cyclase. SHC is an | 99.91 | |
| cd02892 | 634 | SQCY_1 Squalene cyclase (SQCY) domain subgroup 1; | 99.89 | |
| TIGR01787 | 621 | squalene_cyclas squalene/oxidosqualene cyclases. T | 99.87 | |
| PF07678 | 246 | A2M_comp: A-macroglobulin complement component; In | 99.86 | |
| cd02889 | 348 | SQCY Squalene cyclase (SQCY) domain; found in clas | 99.86 | |
| PF13249 | 113 | Prenyltrans_2: Prenyltransferase-like; PDB: 1O6R_B | 99.84 | |
| cd00688 | 300 | ISOPREN_C2_like This group contains class II terpe | 99.84 | |
| cd02890 | 286 | PTase Protein prenyltransferase (PTase) domain, be | 99.82 | |
| cd02894 | 287 | GGTase-II Geranylgeranyltransferase type II (GGTas | 99.81 | |
| cd00688 | 300 | ISOPREN_C2_like This group contains class II terpe | 99.81 | |
| KOG0497 | 760 | consensus Oxidosqualene-lanosterol cyclase and rel | 99.8 | |
| PLN03201 | 316 | RAB geranylgeranyl transferase beta-subunit; Provi | 99.8 | |
| cd02894 | 287 | GGTase-II Geranylgeranyltransferase type II (GGTas | 99.74 | |
| PF13249 | 113 | Prenyltrans_2: Prenyltransferase-like; PDB: 1O6R_B | 99.73 | |
| cd02895 | 307 | GGTase-I Geranylgeranyltransferase types I (GGTase | 99.72 | |
| PLN02710 | 439 | farnesyltranstransferase subunit beta | 99.72 | |
| PF13243 | 109 | Prenyltrans_1: Prenyltransferase-like; PDB: 3SDR_A | 99.72 | |
| cd02893 | 299 | FTase Protein farnesyltransferase (FTase)_like pro | 99.71 | |
| KOG0366 | 329 | consensus Protein geranylgeranyltransferase type I | 99.69 | |
| cd02890 | 286 | PTase Protein prenyltransferase (PTase) domain, be | 99.68 | |
| cd02895 | 307 | GGTase-I Geranylgeranyltransferase types I (GGTase | 99.67 | |
| cd02891 | 282 | A2M_like Proteins similar to alpha2-macroglobulin | 99.66 | |
| PLN03201 | 316 | RAB geranylgeranyl transferase beta-subunit; Provi | 99.64 | |
| cd02896 | 297 | complement_C3_C4_C5 Proteins similar to C3, C4 and | 99.64 | |
| cd02897 | 292 | A2M_2 Proteins similar to alpha2-macroglobulin (al | 99.62 | |
| cd02893 | 299 | FTase Protein farnesyltransferase (FTase)_like pro | 99.59 | |
| COG5029 | 342 | CAL1 Prenyltransferase, beta subunit [Posttranslat | 99.57 | |
| PLN02710 | 439 | farnesyltranstransferase subunit beta | 99.51 | |
| KOG0366 | 329 | consensus Protein geranylgeranyltransferase type I | 99.47 | |
| TIGR02474 | 290 | pec_lyase pectate lyase, PelA/Pel-15E family. Memb | 99.47 | |
| cd02891 | 282 | A2M_like Proteins similar to alpha2-macroglobulin | 99.42 | |
| KOG0365 | 423 | consensus Beta subunit of farnesyltransferase [Pos | 99.41 | |
| PF13243 | 109 | Prenyltrans_1: Prenyltransferase-like; PDB: 3SDR_A | 99.37 | |
| COG5029 | 342 | CAL1 Prenyltransferase, beta subunit [Posttranslat | 99.35 | |
| COG1657 | 517 | SqhC Squalene cyclase [Lipid metabolism] | 99.28 | |
| PF07678 | 246 | A2M_comp: A-macroglobulin complement component; In | 99.24 | |
| KOG0365 | 423 | consensus Beta subunit of farnesyltransferase [Pos | 99.18 | |
| TIGR02474 | 290 | pec_lyase pectate lyase, PelA/Pel-15E family. Memb | 99.08 | |
| KOG1366 | 1436 | consensus Alpha-macroglobulin [Posttranslational m | 99.04 | |
| KOG0367 | 347 | consensus Protein geranylgeranyltransferase Type I | 98.98 | |
| KOG0367 | 347 | consensus Protein geranylgeranyltransferase Type I | 98.94 | |
| PF09492 | 289 | Pec_lyase: Pectic acid lyase; InterPro: IPR012669 | 98.89 | |
| COG1689 | 274 | Uncharacterized protein conserved in archaea [Func | 98.73 | |
| ) (2,3-epoxysqualene-cycloartenol cyclase) is a plant enzyme that catalyzes the cyclization of (S)-2,3-epoxysqualene to cycloartenol.; GO: 0003824 catalytic activity; PDB: 2IEJ_B 1LD7_B 1LD8_B 2H6G_B 1TN6_B 1S63_B 1MZC_B 2H6I_B 2H6F_B 1JCQ_B ...." target="_blank" href="http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=PF00432">PF00432 | 44 | Prenyltrans: Prenyltransferase and squalene oxidas | 98.47 | |
| PF01122 | 326 | Cobalamin_bind: Eukaryotic cobalamin-binding prote | 98.46 | |
| ) (2,3-epoxysqualene-cycloartenol cyclase) is a plant enzyme that catalyzes the cyclization of (S)-2,3-epoxysqualene to cycloartenol.; GO: 0003824 catalytic activity; PDB: 2IEJ_B 1LD7_B 1LD8_B 2H6G_B 1TN6_B 1S63_B 1MZC_B 2H6I_B 2H6F_B 1JCQ_B ...." target="_blank" href="http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=PF00432">PF00432 | 44 | Prenyltrans: Prenyltransferase and squalene oxidas | 98.18 | |
| PF09492 | 289 | Pec_lyase: Pectic acid lyase; InterPro: IPR012669 | 98.16 | |
| PF01122 | 326 | Cobalamin_bind: Eukaryotic cobalamin-binding prote | 97.67 | |
| COG1689 | 274 | Uncharacterized protein conserved in archaea [Func | 97.67 | |
| PF07470 | 336 | Glyco_hydro_88: Glycosyl Hydrolase Family 88; Inte | 97.4 | |
| PLN02592 | 800 | ent-copalyl diphosphate synthase | 97.21 | |
| KOG1366 | 1436 | consensus Alpha-macroglobulin [Posttranslational m | 97.14 | |
| PLN02592 | 800 | ent-copalyl diphosphate synthase | 96.61 | |
| TIGR01535 | 648 | glucan_glucosid glucan 1,4-alpha-glucosidase. Gluc | 96.47 | |
| PF07470 | 336 | Glyco_hydro_88: Glycosyl Hydrolase Family 88; Inte | 96.43 | |
| TIGR01577 | 616 | oligosac_amyl oligosaccharide amylase. The name of | 96.4 | |
| PLN02279 | 784 | ent-kaur-16-ene synthase | 95.63 | |
| PLN02279 | 784 | ent-kaur-16-ene synthase | 95.56 | |
| cd00249 | 384 | AGE AGE domain; N-acyl-D-glucosamine 2-epimerase d | 94.96 | |
| COG4225 | 357 | Predicted unsaturated glucuronyl hydrolase involve | 94.7 | |
| TIGR01535 | 648 | glucan_glucosid glucan 1,4-alpha-glucosidase. Gluc | 92.63 | |
| cd00249 | 384 | AGE AGE domain; N-acyl-D-glucosamine 2-epimerase d | 92.17 | |
| PF07944 | 520 | DUF1680: Putative glycosyl hydrolase of unknown fu | 91.03 | |
| COG4225 | 357 | Predicted unsaturated glucuronyl hydrolase involve | 88.97 | |
| TIGR01577 | 616 | oligosac_amyl oligosaccharide amylase. The name of | 88.61 | |
| COG2373 | 1621 | Large extracellular alpha-helical protein [General | 87.55 | |
| cd04794 | 343 | euk_LANCL eukaryotic Lanthionine synthetase C-like | 84.58 | |
| PF07221 | 346 | GlcNAc_2-epim: N-acylglucosamine 2-epimerase (GlcN | 81.84 | |
| COG2373 | 1621 | Large extracellular alpha-helical protein [General | 81.57 |
| >PLN03012 Camelliol C synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-55 Score=409.21 Aligned_cols=235 Identities=66% Similarity=1.234 Sum_probs=221.7
Q ss_pred CCCCCCCcccccCCCCchhhhccCcccccccccccCCCcchHHHHHHHHHHHHhhCCCcchHHHHHHHHHHHHHHHHhcc
Q 026485 1 MQSETGGVPAWEPTGAPSWLELLNPIEFLDEVIIEYDKVECTASALKAMTLFKKLYPKHRTKEVKNFIAKATKFIEDIQK 80 (238)
Q Consensus 1 ~qn~dGg~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~Ta~~l~aL~~~~~~~~~~~~~~~~~~i~~a~~~L~~~Q~ 80 (238)
|||+||||++|+..++..||+.+||+|.|+|.++|++++|||+.+|++|..+++..+.++.+++++.|++|++||++.|+
T Consensus 525 mQn~dGGwaafe~~~~~~~le~lnp~E~F~d~mid~~y~dcTa~~l~aL~~f~~~~~~~r~~~i~~~i~rAv~~L~~~Q~ 604 (759)
T PLN03012 525 LQSKNGGMTAWEPAGAPEWLELLNPTEMFADIVIEHEYNECTSSAIQALILFKQLYPDHRTEEINAFIKKAAEYIENIQM 604 (759)
T ss_pred ccCCCCCEeeecCCcchHHHHhcChhhhhcCeecCCCcccHHHHHHHHHHHHhhhCcccchhhhHHHHHHHHHHHHHhcC
Confidence 79999999999999999999999999999999999999999999999999998876766667788999999999999999
Q ss_pred cCCCCcccccccchhhhHHHHHHHHHccccCccHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcccCCCCCCCCHHHHH
Q 026485 81 SDGSWYGSWGICFTYAAWFAISGLVAAKKTYSNCLAIRKATDFLLKIQCEDGGWGESYRSCPNKKYIPLDGNRSNLVQTA 160 (238)
Q Consensus 81 ~dG~w~~~~~~~~~~~T~~al~aL~~~g~~~~~~~~i~~a~~~L~~~Q~~dGgw~~~~~~~~~~~y~~~~~~~~~~~~Ta 160 (238)
+||||++.|+.+++|+|++||.||..+|..+.+.+.|+||++||++.|++||||++++.+|..+.|.+.+++.|++++||
T Consensus 605 ~DGsW~G~Wgv~y~YgT~~aL~aL~a~g~~~~~~~~Irrav~fLls~Q~~DGGWGEs~~Sc~~~~y~~~~~~~S~~~qTa 684 (759)
T PLN03012 605 LDGSWYGNWGICFTYGTWFALAGLAAAGKTFNDCEAIRKGVHFLLAAQKDNGGWGESYLSCPKKIYIAQEGEISNLVQTA 684 (759)
T ss_pred CCCCCcccccccCCcHHHHHHHHHHHhCccCCCcHHHHHHHHHHHHhcCCCCCcCCCCCCCCCccccCCCCCCCcHHHHH
Confidence 99999999999999999999999999998765669999999999999999999999999999989987656689999999
Q ss_pred HHHHHHHHhCCCCCChHHHHHHHHHHHhcccCCCCCCCCccccccCCccccccCCchhhHHHHHHHHHHHhccCC
Q 026485 161 WAMMSLIHAGQMERDPTPLHRAAKLLINSQLEDGDFPQQELTGVFMENCMLHYPIYRNIFPMWALAEYRSRLLLP 235 (238)
Q Consensus 161 ~al~aL~~~g~~~~~~~~v~~a~~~L~~~Q~~dGgw~~~~~~~~~~~~~~~~~~~~~~~~~l~aL~~~~~~~~~~ 235 (238)
|||+||..+|..+.++++|+||++||+++|.+||+|.++.++|+|+++|||+|+.|+.+|||+||++|++.++.+
T Consensus 685 WAl~aLi~ag~~~~~~~~i~Rg~~~Ll~~Q~~dG~W~q~~~~G~F~~~~~i~Y~~Yr~~FPl~ALg~Y~~~~~~~ 759 (759)
T PLN03012 685 WALMGLIHAGQAERDPIPLHRAAKLIINSQLENGDFPQQEATGAFLKNCLLHYAAYRNIFPLWALAEYRARVPLP 759 (759)
T ss_pred HHHHHHHHcCCCCCCcHHHHHHHHHHHHcccCCCCCCCceeeeeeccceEEecCccchHHHHHHHHHHHHhccCC
Confidence 999999999987766668999999999999999999999999999999999999999999999999999998764
|
|
| >PLN02993 lupeol synthase | Back alignment and domain information |
|---|
| >TIGR03463 osq_cycl 2,3-oxidosqualene cyclase | Back alignment and domain information |
|---|
| >TIGR01787 squalene_cyclas squalene/oxidosqualene cyclases | Back alignment and domain information |
|---|
| >TIGR01507 hopene_cyclase squalene-hopene cyclase | Back alignment and domain information |
|---|
| >KOG0497 consensus Oxidosqualene-lanosterol cyclase and related proteins [Lipid transport and metabolism] | Back alignment and domain information |
|---|
| >cd02892 SQCY_1 Squalene cyclase (SQCY) domain subgroup 1; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold | Back alignment and domain information |
|---|
| >cd02889 SQCY Squalene cyclase (SQCY) domain; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold | Back alignment and domain information |
|---|
| >PLN03012 Camelliol C synthase | Back alignment and domain information |
|---|
| >PLN02993 lupeol synthase | Back alignment and domain information |
|---|
| >TIGR03463 osq_cycl 2,3-oxidosqualene cyclase | Back alignment and domain information |
|---|
| >cd02897 A2M_2 Proteins similar to alpha2-macroglobulin (alpha (2)-M) | Back alignment and domain information |
|---|
| >cd02896 complement_C3_C4_C5 Proteins similar to C3, C4 and C5 of vertebrate complement | Back alignment and domain information |
|---|
| >COG1657 SqhC Squalene cyclase [Lipid metabolism] | Back alignment and domain information |
|---|
| >TIGR01507 hopene_cyclase squalene-hopene cyclase | Back alignment and domain information |
|---|
| >cd02892 SQCY_1 Squalene cyclase (SQCY) domain subgroup 1; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold | Back alignment and domain information |
|---|
| >TIGR01787 squalene_cyclas squalene/oxidosqualene cyclases | Back alignment and domain information |
|---|
| >PF07678 A2M_comp: A-macroglobulin complement component; InterPro: IPR011626 This domain covers the complement component region of the alpha-2-macroglobulin family | Back alignment and domain information |
|---|
| >cd02889 SQCY Squalene cyclase (SQCY) domain; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold | Back alignment and domain information |
|---|
| >PF13249 Prenyltrans_2: Prenyltransferase-like; PDB: 1O6R_B 1O6Q_B 1H35_C 1H3A_C 1SQC_A 1UMP_A 1O6H_C 1O79_B 1GSZ_C 1H37_C | Back alignment and domain information |
|---|
| >cd00688 ISOPREN_C2_like This group contains class II terpene cyclases, protein prenyltransferases beta subunit, two broadly specific proteinase inhibitors alpha2-macroglobulin (alpha (2)-M) and pregnancy zone protein (PZP) and, the C3 C4 and C5 components of vertebrate complement | Back alignment and domain information |
|---|
| >cd02890 PTase Protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold) | Back alignment and domain information |
|---|
| >cd02894 GGTase-II Geranylgeranyltransferase type II (GGTase-II)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold) | Back alignment and domain information |
|---|
| >cd00688 ISOPREN_C2_like This group contains class II terpene cyclases, protein prenyltransferases beta subunit, two broadly specific proteinase inhibitors alpha2-macroglobulin (alpha (2)-M) and pregnancy zone protein (PZP) and, the C3 C4 and C5 components of vertebrate complement | Back alignment and domain information |
|---|
| >KOG0497 consensus Oxidosqualene-lanosterol cyclase and related proteins [Lipid transport and metabolism] | Back alignment and domain information |
|---|
| >PLN03201 RAB geranylgeranyl transferase beta-subunit; Provisional | Back alignment and domain information |
|---|
| >cd02894 GGTase-II Geranylgeranyltransferase type II (GGTase-II)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold) | Back alignment and domain information |
|---|
| >PF13249 Prenyltrans_2: Prenyltransferase-like; PDB: 1O6R_B 1O6Q_B 1H35_C 1H3A_C 1SQC_A 1UMP_A 1O6H_C 1O79_B 1GSZ_C 1H37_C | Back alignment and domain information |
|---|
| >cd02895 GGTase-I Geranylgeranyltransferase types I (GGTase-I)-like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold) | Back alignment and domain information |
|---|
| >PLN02710 farnesyltranstransferase subunit beta | Back alignment and domain information |
|---|
| >PF13243 Prenyltrans_1: Prenyltransferase-like; PDB: 3SDR_A 3SAE_A 3SDV_A 3SDT_A 3SDQ_A 3SDU_A | Back alignment and domain information |
|---|
| >cd02893 FTase Protein farnesyltransferase (FTase)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold) | Back alignment and domain information |
|---|
| >KOG0366 consensus Protein geranylgeranyltransferase type II, beta subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >cd02890 PTase Protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold) | Back alignment and domain information |
|---|
| >cd02895 GGTase-I Geranylgeranyltransferase types I (GGTase-I)-like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold) | Back alignment and domain information |
|---|
| >cd02891 A2M_like Proteins similar to alpha2-macroglobulin (alpha (2)-M) | Back alignment and domain information |
|---|
| >PLN03201 RAB geranylgeranyl transferase beta-subunit; Provisional | Back alignment and domain information |
|---|
| >cd02896 complement_C3_C4_C5 Proteins similar to C3, C4 and C5 of vertebrate complement | Back alignment and domain information |
|---|
| >cd02897 A2M_2 Proteins similar to alpha2-macroglobulin (alpha (2)-M) | Back alignment and domain information |
|---|
| >cd02893 FTase Protein farnesyltransferase (FTase)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold) | Back alignment and domain information |
|---|
| >COG5029 CAL1 Prenyltransferase, beta subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >PLN02710 farnesyltranstransferase subunit beta | Back alignment and domain information |
|---|
| >KOG0366 consensus Protein geranylgeranyltransferase type II, beta subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >TIGR02474 pec_lyase pectate lyase, PelA/Pel-15E family | Back alignment and domain information |
|---|
| >cd02891 A2M_like Proteins similar to alpha2-macroglobulin (alpha (2)-M) | Back alignment and domain information |
|---|
| >KOG0365 consensus Beta subunit of farnesyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >PF13243 Prenyltrans_1: Prenyltransferase-like; PDB: 3SDR_A 3SAE_A 3SDV_A 3SDT_A 3SDQ_A 3SDU_A | Back alignment and domain information |
|---|
| >COG5029 CAL1 Prenyltransferase, beta subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >COG1657 SqhC Squalene cyclase [Lipid metabolism] | Back alignment and domain information |
|---|
| >PF07678 A2M_comp: A-macroglobulin complement component; InterPro: IPR011626 This domain covers the complement component region of the alpha-2-macroglobulin family | Back alignment and domain information |
|---|
| >KOG0365 consensus Beta subunit of farnesyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >TIGR02474 pec_lyase pectate lyase, PelA/Pel-15E family | Back alignment and domain information |
|---|
| >KOG1366 consensus Alpha-macroglobulin [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG0367 consensus Protein geranylgeranyltransferase Type I, beta subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG0367 consensus Protein geranylgeranyltransferase Type I, beta subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >PF09492 Pec_lyase: Pectic acid lyase; InterPro: IPR012669 Members of this family are isozymes of pectate lyase (4 | Back alignment and domain information |
|---|
| >COG1689 Uncharacterized protein conserved in archaea [Function unknown] | Back alignment and domain information |
|---|
| >PF00432 Prenyltrans: Prenyltransferase and squalene oxidase repeat This Prosite family is a subset of the Pfam family | Back alignment and domain information |
|---|
| >PF01122 Cobalamin_bind: Eukaryotic cobalamin-binding protein; InterPro: IPR002157 Cobalamin (Cbl or vitamin B12) is only accessible through diet in mammals | Back alignment and domain information |
|---|
| >PF00432 Prenyltrans: Prenyltransferase and squalene oxidase repeat This Prosite family is a subset of the Pfam family | Back alignment and domain information |
|---|
| >PF09492 Pec_lyase: Pectic acid lyase; InterPro: IPR012669 Members of this family are isozymes of pectate lyase (4 | Back alignment and domain information |
|---|
| >PF01122 Cobalamin_bind: Eukaryotic cobalamin-binding protein; InterPro: IPR002157 Cobalamin (Cbl or vitamin B12) is only accessible through diet in mammals | Back alignment and domain information |
|---|
| >COG1689 Uncharacterized protein conserved in archaea [Function unknown] | Back alignment and domain information |
|---|
| >PF07470 Glyco_hydro_88: Glycosyl Hydrolase Family 88; InterPro: IPR010905 Unsaturated glucuronyl hydrolase catalyses the hydrolytic release of unsaturated glucuronic acids from oligosaccharides produced by the reactions of polysaccharide lyases [] | Back alignment and domain information |
|---|
| >PLN02592 ent-copalyl diphosphate synthase | Back alignment and domain information |
|---|
| >KOG1366 consensus Alpha-macroglobulin [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >PLN02592 ent-copalyl diphosphate synthase | Back alignment and domain information |
|---|
| >TIGR01535 glucan_glucosid glucan 1,4-alpha-glucosidase | Back alignment and domain information |
|---|
| >PF07470 Glyco_hydro_88: Glycosyl Hydrolase Family 88; InterPro: IPR010905 Unsaturated glucuronyl hydrolase catalyses the hydrolytic release of unsaturated glucuronic acids from oligosaccharides produced by the reactions of polysaccharide lyases [] | Back alignment and domain information |
|---|
| >TIGR01577 oligosac_amyl oligosaccharide amylase | Back alignment and domain information |
|---|
| >PLN02279 ent-kaur-16-ene synthase | Back alignment and domain information |
|---|
| >PLN02279 ent-kaur-16-ene synthase | Back alignment and domain information |
|---|
| >cd00249 AGE AGE domain; N-acyl-D-glucosamine 2-epimerase domain; Responsible for intermediate epimerization during biosynthesis of N-acetylneuraminic acid | Back alignment and domain information |
|---|
| >COG4225 Predicted unsaturated glucuronyl hydrolase involved in regulation of bacterial surface properties, and related proteins [General function prediction only] | Back alignment and domain information |
|---|
| >TIGR01535 glucan_glucosid glucan 1,4-alpha-glucosidase | Back alignment and domain information |
|---|
| >cd00249 AGE AGE domain; N-acyl-D-glucosamine 2-epimerase domain; Responsible for intermediate epimerization during biosynthesis of N-acetylneuraminic acid | Back alignment and domain information |
|---|
| >PF07944 DUF1680: Putative glycosyl hydrolase of unknown function (DUF1680); InterPro: IPR012878 The members of this family are sequences derived from hypothetical bacterial and eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
| >COG4225 Predicted unsaturated glucuronyl hydrolase involved in regulation of bacterial surface properties, and related proteins [General function prediction only] | Back alignment and domain information |
|---|
| >TIGR01577 oligosac_amyl oligosaccharide amylase | Back alignment and domain information |
|---|
| >COG2373 Large extracellular alpha-helical protein [General function prediction only] | Back alignment and domain information |
|---|
| >cd04794 euk_LANCL eukaryotic Lanthionine synthetase C-like protein | Back alignment and domain information |
|---|
| >PF07221 GlcNAc_2-epim: N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase); InterPro: IPR010819 N-acylglucosamine 2-epimerase (AGE, 5 | Back alignment and domain information |
|---|
| >COG2373 Large extracellular alpha-helical protein [General function prediction only] | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 238 | ||||
| 1w6j_A | 732 | Structure Of Human Osc In Complex With Ro 48-8071 L | 5e-50 | ||
| 1w6k_A | 732 | Structure Of Human Osc In Complex With Lanosterol L | 6e-50 | ||
| 3sqc_A | 631 | Squalene-Hopene Cyclase Length = 631 | 7e-21 | ||
| 1gsz_A | 631 | Crystal Structure Of A Squalene Cyclase In Complex | 7e-21 | ||
| 2sqc_A | 631 | Squalene-Hopene Cyclase From Alicyclobacillus Acido | 9e-21 |
| >pdb|1W6J|A Chain A, Structure Of Human Osc In Complex With Ro 48-8071 Length = 732 | Back alignment and structure |
|
| >pdb|1W6K|A Chain A, Structure Of Human Osc In Complex With Lanosterol Length = 732 | Back alignment and structure |
| >pdb|3SQC|A Chain A, Squalene-Hopene Cyclase Length = 631 | Back alignment and structure |
| >pdb|1GSZ|A Chain A, Crystal Structure Of A Squalene Cyclase In Complex With The Potential Anticholesteremic Drug Ro48-8071 Length = 631 | Back alignment and structure |
| >pdb|2SQC|A Chain A, Squalene-Hopene Cyclase From Alicyclobacillus Acidocaldarius Length = 631 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1w6k_A Lanosterol synthase; cyclase, cholesterol, monotopic membrane protein, B-octyl-glucoside, isomerase, steroid biosynthesis; HET: BOG LAN; 2.1A {Homo sapiens} SCOP: a.102.4.2 a.102.4.2 PDB: 1w6j_A* Length = 732 | Back alignment and structure |
|---|
Score = 253 bits (647), Expect = 4e-80
Identities = 88/235 (37%), Positives = 133/235 (56%), Gaps = 7/235 (2%)
Query: 1 MQSETGGVPAWEPTGAPSWLELLNPIEFLDEVIIEYDKVECTASALKAMTLFKKLYPKHR 60
M++ GG +E LELLNP E +++I+Y VECT++ ++A+ F K +P+HR
Sbjct: 493 MRNPDGGFATYETKRGGHLLELLNPSEVFGDIMIDYTYVECTSAVMQALKYFHKRFPEHR 552
Query: 61 TKEVKNFIAKATKFIEDIQKSDGSWYGSWGICFTYAAWFAISGLVAAKKTYSN---CLAI 117
E++ + + +F Q++DGSW GSWG+CFTY WF + +TY + C +
Sbjct: 553 AAEIRETLTQGLEFCRRQQRADGSWEGSWGVCFTYGTWFGLEAFACMGQTYRDGTACAEV 612
Query: 118 RKATDFLLKIQCEDGGWGESYRSCPNKKYIPLDGNRSNLVQTAWAMMSLIHAGQMERDPT 177
+A DFLL Q DGGWGE + SC ++Y+ +S + T WAMM L+ D
Sbjct: 613 SRACDFLLSRQMADGGWGEDFESCEERRYVQ--SAQSQIHNTCWAMMGLMAVRH--PDIE 668
Query: 178 PLHRAAKLLINSQLEDGDFPQQELTGVFMENCMLHYPIYRNIFPMWALAEYRSRL 232
R + L+ QL +GD+PQ+ + GVF ++C + Y YRNIFP+WAL +
Sbjct: 669 AQERGVRCLLEKQLPNGDWPQENIAGVFNKSCAISYTSYRNIFPIWALGRFSQLY 723
|
| >1w6k_A Lanosterol synthase; cyclase, cholesterol, monotopic membrane protein, B-octyl-glucoside, isomerase, steroid biosynthesis; HET: BOG LAN; 2.1A {Homo sapiens} SCOP: a.102.4.2 a.102.4.2 PDB: 1w6j_A* Length = 732 | Back alignment and structure |
|---|
| >2sqc_A Squalene-hopene cyclase; isomerase, triterpene cyclase, monotopic membrane protein, QW-sequence, repeat; HET: C8E; 2.00A {Alicyclobacillus acidocaldarius} SCOP: a.102.4.2 a.102.4.2 PDB: 3sqc_A 1ump_A* 1h35_A* 1h36_A* 1h37_A* 1h39_A* 1h3a_A* 1h3b_A* 1h3c_A* 1o6h_A* 1o6q_A* 1gsz_A* 1o79_A* 1sqc_A* 1o6r_A* Length = 631 | Back alignment and structure |
|---|
| >2sqc_A Squalene-hopene cyclase; isomerase, triterpene cyclase, monotopic membrane protein, QW-sequence, repeat; HET: C8E; 2.00A {Alicyclobacillus acidocaldarius} SCOP: a.102.4.2 a.102.4.2 PDB: 3sqc_A 1ump_A* 1h35_A* 1h36_A* 1h37_A* 1h39_A* 1h3a_A* 1h3b_A* 1h3c_A* 1o6h_A* 1o6q_A* 1gsz_A* 1o79_A* 1sqc_A* 1o6r_A* Length = 631 | Back alignment and structure |
|---|
| >2sqc_A Squalene-hopene cyclase; isomerase, triterpene cyclase, monotopic membrane protein, QW-sequence, repeat; HET: C8E; 2.00A {Alicyclobacillus acidocaldarius} SCOP: a.102.4.2 a.102.4.2 PDB: 3sqc_A 1ump_A* 1h35_A* 1h36_A* 1h37_A* 1h39_A* 1h3a_A* 1h3b_A* 1h3c_A* 1o6h_A* 1o6q_A* 1gsz_A* 1o79_A* 1sqc_A* 1o6r_A* Length = 631 | Back alignment and structure |
|---|
| >1r76_A Pectate lyase; A-helical structure; 2.65A {Azospirillum irakense} SCOP: a.102.5.1 Length = 408 | Back alignment and structure |
|---|
| >3q7a_B Farnesyltransferase beta subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3CX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_B* 3q78_B* 3q79_B* 3q75_B* 3q7f_B* 3sfx_B* 3sfy_B* Length = 520 | Back alignment and structure |
|---|
| >3dss_B Geranylgeranyl transferase type-2 subunit beta; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1ltx_B* 3c72_B* 1dce_B 3dst_B* 3dsu_B* 3dsv_B* 3dsw_B* 3dsx_B* 3hxb_B* 3hxc_B* 3hxd_B* 3hxe_B* 3hxf_B* 3pz1_B* 3pz2_B* 3pz3_B* Length = 331 | Back alignment and structure |
|---|
| >2h6f_B Protein farnesyltransferase beta subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.102.4.3 PDB: 1jcq_B* 1ld7_B* 1mzc_B* 1s63_B* 1sa4_B* 1tn6_B* 2f0y_B* 1ld8_B* 2iej_B* 3e37_B* 2h6h_B* 2h6g_B* 2h6i_B* 1o1t_B* 1o1s_B* 1o1r_B* 3eu5_B* 3pz4_B* 3e33_B* 1d8e_B* ... Length = 437 | Back alignment and structure |
|---|
| >1gxm_A Pectate lyase; mechanism, elimination; 1.32A {Cellvibrio cellulosa} SCOP: a.102.5.1 PDB: 1gxn_A 1gxo_A* Length = 332 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 238 | |||
| 1w6k_A | 732 | Lanosterol synthase; cyclase, cholesterol, monotop | 100.0 | |
| 2sqc_A | 631 | Squalene-hopene cyclase; isomerase, triterpene cyc | 100.0 | |
| 1qqf_A | 277 | Protein (complement C3DG); alpha-alpha barrel, imm | 99.94 | |
| 2wy7_A | 310 | Complement C3D fragment; immune system, immune res | 99.94 | |
| 2h6f_B | 437 | Protein farnesyltransferase beta subunit; ftase, f | 99.92 | |
| 3dss_B | 331 | Geranylgeranyl transferase type-2 subunit beta; pr | 99.92 | |
| 1n4q_B | 377 | Geranyltransferase type-I beta subunit; protein ge | 99.92 | |
| 1hzf_A | 367 | Complement factor C4A; alpha-alpha 6 barrel, immun | 99.91 | |
| 2h6f_B | 437 | Protein farnesyltransferase beta subunit; ftase, f | 99.91 | |
| 1w6k_A | 732 | Lanosterol synthase; cyclase, cholesterol, monotop | 99.9 | |
| 3q7a_B | 520 | Farnesyltransferase beta subunit; protein prenyltr | 99.88 | |
| 3dss_B | 331 | Geranylgeranyl transferase type-2 subunit beta; pr | 99.86 | |
| 2sqc_A | 631 | Squalene-hopene cyclase; isomerase, triterpene cyc | 99.86 | |
| 2hr0_B | 915 | Complement C3 alpha' chain; complement component C | 99.83 | |
| 4acq_A | 1451 | Alpha-2-macroglobulin; hydrolase inhibitor, protei | 99.82 | |
| 1r76_A | 408 | Pectate lyase; A-helical structure; 2.65A {Azospir | 99.8 | |
| 2pn5_A | 1325 | TEP1R, thioester-containing protein I; FULL-length | 99.78 | |
| 3q7a_B | 520 | Farnesyltransferase beta subunit; protein prenyltr | 99.7 | |
| 1n4q_B | 377 | Geranyltransferase type-I beta subunit; protein ge | 99.68 | |
| 1gxm_A | 332 | Pectate lyase; mechanism, elimination; 1.32A {Cell | 99.68 | |
| 1r76_A | 408 | Pectate lyase; A-helical structure; 2.65A {Azospir | 99.68 | |
| 4fxk_B | 767 | Complement C4-A alpha chain; immune system, proteo | 99.67 | |
| 3prx_B | 1642 | Cobra venom factor; immune system, complement, imm | 99.63 | |
| 1hzf_A | 367 | Complement factor C4A; alpha-alpha 6 barrel, immun | 99.61 | |
| 1qqf_A | 277 | Protein (complement C3DG); alpha-alpha barrel, imm | 99.58 | |
| 1gxm_A | 332 | Pectate lyase; mechanism, elimination; 1.32A {Cell | 99.56 | |
| 2b39_A | 1661 | C3; thioester, immune defense, immune system; HET: | 99.56 | |
| 2wy7_A | 310 | Complement C3D fragment; immune system, immune res | 99.56 | |
| 3cu7_A | 1676 | Complement C5; Mg domain, inflammation, anaphylato | 99.55 | |
| 3dra_B | 390 | Geranylgeranyltransferase type I beta subunit; ger | 99.5 | |
| 4acq_A | 1451 | Alpha-2-macroglobulin; hydrolase inhibitor, protei | 99.32 | |
| 3dra_B | 390 | Geranylgeranyltransferase type I beta subunit; ger | 99.3 | |
| 2hr0_B | 915 | Complement C3 alpha' chain; complement component C | 99.17 | |
| 2bb6_A | 414 | TCII, TC II, transcobalamin II; alpha_6 - alpha_6 | 99.13 | |
| 2pn5_A | 1325 | TEP1R, thioester-containing protein I; FULL-length | 99.1 | |
| 2pmv_A | 399 | Gastric intrinsic factor; cobalamin transport prot | 99.0 | |
| 4fxk_B | 767 | Complement C4-A alpha chain; immune system, proteo | 98.97 | |
| 2bb6_A | 414 | TCII, TC II, transcobalamin II; alpha_6 - alpha_6 | 98.93 | |
| 2pmv_A | 399 | Gastric intrinsic factor; cobalamin transport prot | 98.89 | |
| 2b39_A | 1661 | C3; thioester, immune defense, immune system; HET: | 98.73 | |
| 3prx_B | 1642 | Cobra venom factor; immune system, complement, imm | 98.73 | |
| 3cu7_A | 1676 | Complement C5; Mg domain, inflammation, anaphylato | 98.48 | |
| 3pya_A | 727 | ENT-copalyl diphosphate synthase, chloroplastic; c | 97.38 | |
| 3s9v_A | 785 | Abietadiene synthase, chloroplastic; alpha bundle/ | 97.33 | |
| 3sdr_A | 817 | Alpha-bisabolene synthase; lyase, terpene synthase | 97.28 | |
| 3p5p_A | 764 | Taxadiene synthase; class I and II terpene cyclase | 97.24 | |
| 3pmm_A | 382 | Putative cytoplasmic protein; structural genomics, | 97.04 | |
| 3k11_A | 445 | Putative glycosyl hydrolase; structural genomics, | 96.77 | |
| 3pya_A | 727 | ENT-copalyl diphosphate synthase, chloroplastic; c | 96.59 | |
| 1nc5_A | 373 | Hypothetical protein YTER; structural genomics, he | 96.55 | |
| 3p5p_A | 764 | Taxadiene synthase; class I and II terpene cyclase | 96.54 | |
| 3pmm_A | 382 | Putative cytoplasmic protein; structural genomics, | 96.51 | |
| 3s9v_A | 785 | Abietadiene synthase, chloroplastic; alpha bundle/ | 96.5 | |
| 3sdr_A | 817 | Alpha-bisabolene synthase; lyase, terpene synthase | 96.5 | |
| 1lf6_A | 684 | Glucoamylase; (alpha/alpha) barrel, 6 alpha-helica | 95.51 | |
| 2gz6_A | 388 | N-acetyl-D-glucosamine 2-epimerase; anabaena SP. C | 95.37 | |
| 1ulv_A | 1020 | Glucodextranase; GH family 15, (alpha-alpha)6-barr | 95.15 | |
| 3k11_A | 445 | Putative glycosyl hydrolase; structural genomics, | 94.09 | |
| 1nc5_A | 373 | Hypothetical protein YTER; structural genomics, he | 92.51 | |
| 2gz6_A | 388 | N-acetyl-D-glucosamine 2-epimerase; anabaena SP. C | 92.3 | |
| 1lf6_A | 684 | Glucoamylase; (alpha/alpha) barrel, 6 alpha-helica | 90.39 | |
| 1fp3_A | 402 | N-acyl-D-glucosamine 2-epimerase; alpha/alpha-barr | 87.41 | |
| 3e6u_A | 411 | LANC-like protein 1; alpha barrel, cytoplasm, sign | 87.3 | |
| 3gt5_A | 402 | N-acetylglucosamine 2-epimerase; structural genomi | 86.92 | |
| 3gt5_A | 402 | N-acetylglucosamine 2-epimerase; structural genomi | 86.66 | |
| 3h7l_A | 586 | Endoglucanase; dehydrogenase, PSI-2, NYSGXRC, stru | 83.14 | |
| 2vn4_A | 599 | Glucoamylase; hydrolase, carbohydrate binding, gly | 82.63 | |
| 2zbl_A | 421 | Putative isomerase; N-acyl-D-glucosamine 2-epimera | 82.6 | |
| 1ulv_A | 1020 | Glucodextranase; GH family 15, (alpha-alpha)6-barr | 80.6 | |
| 3ren_A | 350 | Glycosyl hydrolase, family 8; (alpha/alpha)6-barre | 80.16 |
| >1w6k_A Lanosterol synthase; cyclase, cholesterol, monotopic membrane protein, B-octyl-glucoside, isomerase, steroid biosynthesis; HET: BOG LAN; 2.1A {Homo sapiens} SCOP: a.102.4.2 a.102.4.2 PDB: 1w6j_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-41 Score=320.44 Aligned_cols=233 Identities=37% Similarity=0.836 Sum_probs=206.6
Q ss_pred CCCCCCCcccccCCCCchhhhccCcccccccccccCCCcchHHHHHHHHHHHHhhCCCcchHHHHHHHHHHHHHHHHhcc
Q 026485 1 MQSETGGVPAWEPTGAPSWLELLNPIEFLDEVIIEYDKVECTASALKAMTLFKKLYPKHRTKEVKNFIAKATKFIEDIQK 80 (238)
Q Consensus 1 ~qn~dGg~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~Ta~~l~aL~~~~~~~~~~~~~~~~~~i~~a~~~L~~~Q~ 80 (238)
+||+||||++|+..++..|++.++|.+.|++.+++++++++|+.+|.+|..++...+.++.+++++.|+++++||++.|+
T Consensus 493 ~Q~~DGgw~a~~~~~~~~~l~~i~~~e~fg~~~~d~s~v~~Ta~vL~aL~~~~~~~~~~~~~~~~~~i~rAv~yL~~~Q~ 572 (732)
T 1w6k_A 493 MRNPDGGFATYETKRGGHLLELLNPSEVFGDIMIDYTYVECTSAVMQALKYFHKRFPEHRAAEIRETLTQGLEFCRRQQR 572 (732)
T ss_dssp TCCTTSCBCSSSCCCSCGGGGGGCCCSSCSSCSSCCCBHHHHHHHHHHHHHHHHHCTTSSHHHHHHHHHHHHHHHHHHSC
T ss_pred hcCCCCCEEeecCCCchHHHhhCcchhcccccccCCCcchHHHHHHHHHHHhccccccccchhhHHHHHHHHHHHHhhcC
Confidence 69999999999999999999999999999998999999999999999999998765666656677899999999999999
Q ss_pred cCCCCcccccccchhhhHHHHHHHHHccccCccH---HHHHHHHHHHHhccccCCCCCCCCCCCCCCcccCCCCCCCCHH
Q 026485 81 SDGSWYGSWGICFTYAAWFAISGLVAAKKTYSNC---LAIRKATDFLLKIQCEDGGWGESYRSCPNKKYIPLDGNRSNLV 157 (238)
Q Consensus 81 ~dG~w~~~~~~~~~~~T~~al~aL~~~g~~~~~~---~~i~~a~~~L~~~Q~~dGgw~~~~~~~~~~~y~~~~~~~~~~~ 157 (238)
+||+|.+.|+.+++|.|++++.||..+|...... +.++||++||+++|++||||++...++....|.+ +..+++.
T Consensus 573 ~DGsW~g~wg~~~~Y~T~~al~AL~~aG~~~~~~~~~~~i~rav~~Lls~Q~~DGGWge~~~s~~~~~y~~--~~~s~v~ 650 (732)
T 1w6k_A 573 ADGSWEGSWGVCFTYGTWFGLEAFACMGQTYRDGTACAEVSRACDFLLSRQMADGGWGEDFESCEERRYVQ--SAQSQIH 650 (732)
T ss_dssp TTSCCCCSSBSSHHHHHHHHHHHHHHTTCCCBTTBCCHHHHHHHHHHHTTCCTTSCCCBCTHHHHHTSCCB--CSSCCHH
T ss_pred CCCCccCcCCCccchHHHHHHHHHHHhCCcccccchhHHHHHHHHHHHHhcccCCCCCCCCccccccccCC--CCCCCHH
Confidence 9999999999999999999999999999864222 7899999999999999999998654333333443 4568899
Q ss_pred HHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcccCCCCCCCCccccccCCccccccCCchhhHHHHHHHHHHHhccCCCC
Q 026485 158 QTAWAMMSLIHAGQMERDPTPLHRAAKLLINSQLEDGDFPQQELTGVFMENCMLHYPIYRNIFPMWALAEYRSRLLLPEI 237 (238)
Q Consensus 158 ~Ta~al~aL~~~g~~~~~~~~v~~a~~~L~~~Q~~dGgw~~~~~~~~~~~~~~~~~~~~~~~~~l~aL~~~~~~~~~~~~ 237 (238)
.|+|||++|..++.. +.++++++++||+++|+++|+|.++...|+|++.|||+|+.|+.+|+|+||++|+++++..++
T Consensus 651 ~TAwALlALl~ag~~--~~~~i~r~v~wL~~~Q~~~Ggf~~~~~~g~f~~~~~i~Y~~y~~~fpl~AL~~y~~~~~~~~~ 728 (732)
T 1w6k_A 651 NTCWAMMGLMAVRHP--DIEAQERGVRCLLEKQLPNGDWPQENIAGVFNKSCAISYTSYRNIFPIWALGRFSQLYPERAL 728 (732)
T ss_dssp HHHHHHHHHHHTTCS--CHHHHHHHHHHHHHHCCTTSCCCCCSCCEEETTTEEECCTTHHHHHHHHHHHHHHHHCTTSGG
T ss_pred HHHHHHHHHHHcCCC--ChHHHHHHHHHHHHhcCCCCCccCCcccccccchhhhcccchhHHHHHHHHHHHHHhcchhhc
Confidence 999999999998765 456899999999999999999999999999999999999999999999999999999877654
|
| >2sqc_A Squalene-hopene cyclase; isomerase, triterpene cyclase, monotopic membrane protein, QW-sequence, repeat; HET: C8E; 2.00A {Alicyclobacillus acidocaldarius} SCOP: a.102.4.2 a.102.4.2 PDB: 3sqc_A 1ump_A* 1h35_A* 1h36_A* 1h37_A* 1h39_A* 1h3a_A* 1h3b_A* 1h3c_A* 1o6h_A* 1o6q_A* 1gsz_A* 1o79_A* 1sqc_A* 1o6r_A* | Back alignment and structure |
|---|
| >1qqf_A Protein (complement C3DG); alpha-alpha barrel, immune system; 1.45A {Rattus norvegicus} SCOP: a.102.4.4 PDB: 1qsj_A 3d5r_A 2noj_A 2gox_A 3d5s_A 1c3d_A 2xqw_A | Back alignment and structure |
|---|
| >2wy7_A Complement C3D fragment; immune system, immune response, innate immunity, complement inflammatory response; 1.70A {Homo sapiens} PDB: 2wy8_A 3oed_A 3oxu_A 3rj3_A 1ghq_A* 1w2s_A | Back alignment and structure |
|---|
| >2h6f_B Protein farnesyltransferase beta subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.102.4.3 PDB: 1jcq_B* 1ld7_B* 1mzc_B* 1s63_B* 1sa4_B* 1tn6_B* 2f0y_B* 1ld8_B* 2iej_B* 3e37_B* 2h6h_B* 2h6g_B* 2h6i_B* 1o1t_B* 1o1s_B* 1o1r_B* 3eu5_B* 3pz4_B* 3e33_B* 1d8e_B* ... | Back alignment and structure |
|---|
| >3dss_B Geranylgeranyl transferase type-2 subunit beta; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1ltx_B* 3c72_B* 1dce_B 3dst_B* 3dsu_B* 3dsv_B* 3dsw_B* 3dsx_B* 3hxb_B* 3hxc_B* 3hxd_B* 3hxe_B* 3hxf_B* 3pz1_B* 3pz2_B* 3pz3_B* 4ehm_B* 4gts_B* 4gtt_B* 4gtv_B* | Back alignment and structure |
|---|
| >1n4q_B Geranyltransferase type-I beta subunit; protein geranylgeranyltransferase type-I, ggtase; HET: MGM GER; 2.40A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1n4p_B* 1n4r_B* 1n4s_B* 1s64_B* 1tnb_B* 1tno_B* 1tnu_B* 1tny_B* 1tnz_B* | Back alignment and structure |
|---|
| >1hzf_A Complement factor C4A; alpha-alpha 6 barrel, immune system; 2.30A {Homo sapiens} SCOP: a.102.4.4 | Back alignment and structure |
|---|
| >2h6f_B Protein farnesyltransferase beta subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.102.4.3 PDB: 1jcq_B* 1ld7_B* 1mzc_B* 1s63_B* 1sa4_B* 1tn6_B* 2f0y_B* 1ld8_B* 2iej_B* 3e37_B* 2h6h_B* 2h6g_B* 2h6i_B* 1o1t_B* 1o1s_B* 1o1r_B* 3eu5_B* 3pz4_B* 3e33_B* 1d8e_B* ... | Back alignment and structure |
|---|
| >1w6k_A Lanosterol synthase; cyclase, cholesterol, monotopic membrane protein, B-octyl-glucoside, isomerase, steroid biosynthesis; HET: BOG LAN; 2.1A {Homo sapiens} SCOP: a.102.4.2 a.102.4.2 PDB: 1w6j_A* | Back alignment and structure |
|---|
| >3q7a_B Farnesyltransferase beta subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_B* 3q78_B* 3q79_B* 3q75_B* 3q7f_B* 3sfx_B* 3sfy_B* | Back alignment and structure |
|---|
| >3dss_B Geranylgeranyl transferase type-2 subunit beta; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1ltx_B* 3c72_B* 1dce_B 3dst_B* 3dsu_B* 3dsv_B* 3dsw_B* 3dsx_B* 3hxb_B* 3hxc_B* 3hxd_B* 3hxe_B* 3hxf_B* 3pz1_B* 3pz2_B* 3pz3_B* 4ehm_B* 4gts_B* 4gtt_B* 4gtv_B* | Back alignment and structure |
|---|
| >2sqc_A Squalene-hopene cyclase; isomerase, triterpene cyclase, monotopic membrane protein, QW-sequence, repeat; HET: C8E; 2.00A {Alicyclobacillus acidocaldarius} SCOP: a.102.4.2 a.102.4.2 PDB: 3sqc_A 1ump_A* 1h35_A* 1h36_A* 1h37_A* 1h39_A* 1h3a_A* 1h3b_A* 1h3c_A* 1o6h_A* 1o6q_A* 1gsz_A* 1o79_A* 1sqc_A* 1o6r_A* | Back alignment and structure |
|---|
| >2hr0_B Complement C3 alpha' chain; complement component C3B, immune system; HET: THC; 2.26A {Homo sapiens} PDB: 2icf_B* 2wii_B* 2win_B* 3g6j_B 3l5n_B* 2a73_B* 2i07_B* 2xwj_B* 2xwb_B* 2a74_C* 2ice_C* 2qki_C* 3l3o_F* 3nms_C* 3nsa_C* 3ohx_C* 3t4a_C 2ice_B* 3l3o_B* 3nms_B* ... | Back alignment and structure |
|---|
| >4acq_A Alpha-2-macroglobulin; hydrolase inhibitor, proteinase inhibitor, irreversible PROT inhibitor, conformational change, blood plasma inhibitor; HET: MEQ NAG MAN; 4.30A {Homo sapiens} | Back alignment and structure |
|---|
| >1r76_A Pectate lyase; A-helical structure; 2.65A {Azospirillum irakense} SCOP: a.102.5.1 | Back alignment and structure |
|---|
| >2pn5_A TEP1R, thioester-containing protein I; FULL-length mature peptide, immune system; HET: NAG; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
| >3q7a_B Farnesyltransferase beta subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_B* 3q78_B* 3q79_B* 3q75_B* 3q7f_B* 3sfx_B* 3sfy_B* | Back alignment and structure |
|---|
| >1n4q_B Geranyltransferase type-I beta subunit; protein geranylgeranyltransferase type-I, ggtase; HET: MGM GER; 2.40A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1n4p_B* 1n4r_B* 1n4s_B* 1s64_B* 1tnb_B* 1tno_B* 1tnu_B* 1tny_B* 1tnz_B* | Back alignment and structure |
|---|
| >1gxm_A Pectate lyase; mechanism, elimination; 1.32A {Cellvibrio cellulosa} SCOP: a.102.5.1 PDB: 1gxn_A 1gxo_A* | Back alignment and structure |
|---|
| >1r76_A Pectate lyase; A-helical structure; 2.65A {Azospirillum irakense} SCOP: a.102.5.1 | Back alignment and structure |
|---|
| >4fxk_B Complement C4-A alpha chain; immune system, proteolytic cascade; HET: NAG BMA; 3.60A {Homo sapiens} PDB: 4fxg_B* | Back alignment and structure |
|---|
| >3prx_B Cobra venom factor; immune system, complement, immune SYS complex; HET: NAG; 4.30A {Naja kaouthia} PDB: 3pvm_B* | Back alignment and structure |
|---|
| >1hzf_A Complement factor C4A; alpha-alpha 6 barrel, immune system; 2.30A {Homo sapiens} SCOP: a.102.4.4 | Back alignment and structure |
|---|
| >1qqf_A Protein (complement C3DG); alpha-alpha barrel, immune system; 1.45A {Rattus norvegicus} SCOP: a.102.4.4 PDB: 1qsj_A 3d5r_A 2noj_A 2gox_A 3d5s_A 1c3d_A 2xqw_A | Back alignment and structure |
|---|
| >1gxm_A Pectate lyase; mechanism, elimination; 1.32A {Cellvibrio cellulosa} SCOP: a.102.5.1 PDB: 1gxn_A 1gxo_A* | Back alignment and structure |
|---|
| >2b39_A C3; thioester, immune defense, immune system; HET: NAG BMA; 3.00A {Bos taurus} | Back alignment and structure |
|---|
| >2wy7_A Complement C3D fragment; immune system, immune response, innate immunity, complement inflammatory response; 1.70A {Homo sapiens} PDB: 2wy8_A 3oed_A 3oxu_A 3rj3_A 1ghq_A* 1w2s_A | Back alignment and structure |
|---|
| >3cu7_A Complement C5; Mg domain, inflammation, anaphylatoxin, cleavage of basic residues, complement alternate pathway, glycoprotein, immune response; HET: NAG; 3.10A {Homo sapiens} PDB: 3kls_A* 3km9_A* 4e0s_A* 3prx_A* 3pvm_A* 4a5w_A* 1xwe_A | Back alignment and structure |
|---|
| >3dra_B Geranylgeranyltransferase type I beta subunit; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
| >4acq_A Alpha-2-macroglobulin; hydrolase inhibitor, proteinase inhibitor, irreversible PROT inhibitor, conformational change, blood plasma inhibitor; HET: MEQ NAG MAN; 4.30A {Homo sapiens} | Back alignment and structure |
|---|
| >3dra_B Geranylgeranyltransferase type I beta subunit; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
| >2hr0_B Complement C3 alpha' chain; complement component C3B, immune system; HET: THC; 2.26A {Homo sapiens} PDB: 2icf_B* 2wii_B* 2win_B* 3g6j_B 3l5n_B* 2a73_B* 2i07_B* 2xwj_B* 2xwb_B* 2a74_C* 2ice_C* 2qki_C* 3l3o_F* 3nms_C* 3nsa_C* 3ohx_C* 3t4a_C 2ice_B* 3l3o_B* 3nms_B* ... | Back alignment and structure |
|---|
| >2bb6_A TCII, TC II, transcobalamin II; alpha_6 - alpha_6 barrel, transport protein; HET: B12; 2.00A {Bos taurus} PDB: 2bbc_A* 2v3n_A* 2v3p_A* 2bb5_A* | Back alignment and structure |
|---|
| >2pn5_A TEP1R, thioester-containing protein I; FULL-length mature peptide, immune system; HET: NAG; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
| >2pmv_A Gastric intrinsic factor; cobalamin transport protein alpha6-alpha6 motif two domain P transport protein; HET: NAG B12; 2.60A {Homo sapiens} PDB: 3kq4_A* | Back alignment and structure |
|---|
| >4fxk_B Complement C4-A alpha chain; immune system, proteolytic cascade; HET: NAG BMA; 3.60A {Homo sapiens} PDB: 4fxg_B* | Back alignment and structure |
|---|
| >2bb6_A TCII, TC II, transcobalamin II; alpha_6 - alpha_6 barrel, transport protein; HET: B12; 2.00A {Bos taurus} PDB: 2bbc_A* 2v3n_A* 2v3p_A* 2bb5_A* | Back alignment and structure |
|---|
| >2pmv_A Gastric intrinsic factor; cobalamin transport protein alpha6-alpha6 motif two domain P transport protein; HET: NAG B12; 2.60A {Homo sapiens} PDB: 3kq4_A* | Back alignment and structure |
|---|
| >2b39_A C3; thioester, immune defense, immune system; HET: NAG BMA; 3.00A {Bos taurus} | Back alignment and structure |
|---|
| >3prx_B Cobra venom factor; immune system, complement, immune SYS complex; HET: NAG; 4.30A {Naja kaouthia} PDB: 3pvm_B* | Back alignment and structure |
|---|
| >3cu7_A Complement C5; Mg domain, inflammation, anaphylatoxin, cleavage of basic residues, complement alternate pathway, glycoprotein, immune response; HET: NAG; 3.10A {Homo sapiens} PDB: 3kls_A* 3km9_A* 4e0s_A* 3prx_A* 3pvm_A* 4a5w_A* 1xwe_A | Back alignment and structure |
|---|
| >3pya_A ENT-copalyl diphosphate synthase, chloroplastic; class I and II terpene cyclase fold, class II diterpene CYCL DXXDD motif; HET: AG8 1PE; 2.25A {Arabidopsis thaliana} PDB: 3pyb_A* | Back alignment and structure |
|---|
| >3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis} | Back alignment and structure |
|---|
| >3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A* | Back alignment and structure |
|---|
| >3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A* | Back alignment and structure |
|---|
| >3pmm_A Putative cytoplasmic protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 1.90A {Klebsiella pneumoniae subsp} PDB: 3qwt_A | Back alignment and structure |
|---|
| >3k11_A Putative glycosyl hydrolase; structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; HET: MSE MES; 1.80A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
| >3pya_A ENT-copalyl diphosphate synthase, chloroplastic; class I and II terpene cyclase fold, class II diterpene CYCL DXXDD motif; HET: AG8 1PE; 2.25A {Arabidopsis thaliana} PDB: 3pyb_A* | Back alignment and structure |
|---|
| >1nc5_A Hypothetical protein YTER; structural genomics, helix barrel, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Bacillus subtilis} SCOP: a.102.1.6 PDB: 2d8l_A* 2gh4_A* | Back alignment and structure |
|---|
| >3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A* | Back alignment and structure |
|---|
| >3pmm_A Putative cytoplasmic protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 1.90A {Klebsiella pneumoniae subsp} PDB: 3qwt_A | Back alignment and structure |
|---|
| >3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis} | Back alignment and structure |
|---|
| >3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A* | Back alignment and structure |
|---|
| >1lf6_A Glucoamylase; (alpha/alpha) barrel, 6 alpha-helical hairpin torroid, super beta sandwich, carbohydrase family GH15; 2.10A {Thermoanaerobacteriumthermosaccharolyticum} SCOP: a.102.1.5 b.30.5.5 PDB: 1lf9_A* | Back alignment and structure |
|---|
| >2gz6_A N-acetyl-D-glucosamine 2-epimerase; anabaena SP. CH1, isomer; 2.00A {Anabaena SP} | Back alignment and structure |
|---|
| >1ulv_A Glucodextranase; GH family 15, (alpha-alpha)6-barrel, SLH domain, hydrolase; HET: ACR; 2.42A {Arthrobacter globiformis} SCOP: a.102.1.5 b.1.18.2 b.1.9.3 b.30.5.5 PDB: 1ug9_A* | Back alignment and structure |
|---|
| >3k11_A Putative glycosyl hydrolase; structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; HET: MSE MES; 1.80A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
| >1nc5_A Hypothetical protein YTER; structural genomics, helix barrel, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Bacillus subtilis} SCOP: a.102.1.6 PDB: 2d8l_A* 2gh4_A* | Back alignment and structure |
|---|
| >2gz6_A N-acetyl-D-glucosamine 2-epimerase; anabaena SP. CH1, isomer; 2.00A {Anabaena SP} | Back alignment and structure |
|---|
| >1lf6_A Glucoamylase; (alpha/alpha) barrel, 6 alpha-helical hairpin torroid, super beta sandwich, carbohydrase family GH15; 2.10A {Thermoanaerobacteriumthermosaccharolyticum} SCOP: a.102.1.5 b.30.5.5 PDB: 1lf9_A* | Back alignment and structure |
|---|
| >1fp3_A N-acyl-D-glucosamine 2-epimerase; alpha/alpha-barrel, isomer; 2.00A {Sus scrofa} SCOP: a.102.1.3 | Back alignment and structure |
|---|
| >3e6u_A LANC-like protein 1; alpha barrel, cytoplasm, signaling protein; 2.60A {Homo sapiens} PDB: 3e73_A* | Back alignment and structure |
|---|
| >3gt5_A N-acetylglucosamine 2-epimerase; structural genomics, isomerase, PSI-2; 1.70A {Xylella fastidiosa} | Back alignment and structure |
|---|
| >3gt5_A N-acetylglucosamine 2-epimerase; structural genomics, isomerase, PSI-2; 1.70A {Xylella fastidiosa} | Back alignment and structure |
|---|
| >3h7l_A Endoglucanase; dehydrogenase, PSI-2, NYSGXRC, structural GEN protein structure initiative; 2.30A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
| >2vn4_A Glucoamylase; hydrolase, carbohydrate binding, glycoside hydrolase family 15, amyloglucosidase; HET: MAN NAG BTB; 1.85A {Hypocrea jecorina} PDB: 2vn7_A* | Back alignment and structure |
|---|
| >2zbl_A Putative isomerase; N-acyl-D-glucosamine 2-epimerase protein family; HET: BMA; 1.60A {Salmonella typhimurium} PDB: 2afa_A 2rgk_A* | Back alignment and structure |
|---|
| >1ulv_A Glucodextranase; GH family 15, (alpha-alpha)6-barrel, SLH domain, hydrolase; HET: ACR; 2.42A {Arthrobacter globiformis} SCOP: a.102.1.5 b.1.18.2 b.1.9.3 b.30.5.5 PDB: 1ug9_A* | Back alignment and structure |
|---|
| >3ren_A Glycosyl hydrolase, family 8; (alpha/alpha)6-barrel fold, alpha-amylase; 2.00A {Clostridium perfringens} | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 238 | ||||
| d1w6ka1 | 448 | a.102.4.2 (A:6-99,A:379-732) Lanosterol synthase { | 2e-87 | |
| d1w6ka1 | 448 | a.102.4.2 (A:6-99,A:379-732) Lanosterol synthase { | 2e-08 | |
| d1w6ka1 | 448 | a.102.4.2 (A:6-99,A:379-732) Lanosterol synthase { | 7e-06 | |
| d2sqca1 | 352 | a.102.4.2 (A:8-36,A:308-630) Squalene-hopene cycla | 1e-68 | |
| d2sqca1 | 352 | a.102.4.2 (A:8-36,A:308-630) Squalene-hopene cycla | 1e-05 | |
| d2sqca1 | 352 | a.102.4.2 (A:8-36,A:308-630) Squalene-hopene cycla | 2e-05 | |
| d1r76a_ | 408 | a.102.5.1 (A:) Polygalacturonic acid lyase (pectat | 5e-12 | |
| d1r76a_ | 408 | a.102.5.1 (A:) Polygalacturonic acid lyase (pectat | 5e-09 | |
| d3dssb1 | 325 | a.102.4.3 (B:7-331) Rab geranylgeranyltransferase, | 1e-08 | |
| d1gxma_ | 324 | a.102.5.1 (A:) Polygalacturonic acid lyase (pectat | 2e-08 | |
| d1gxma_ | 324 | a.102.5.1 (A:) Polygalacturonic acid lyase (pectat | 2e-05 | |
| d1gxma_ | 324 | a.102.5.1 (A:) Polygalacturonic acid lyase (pectat | 8e-05 | |
| d2h6fb1 | 401 | a.102.4.3 (B:521-921) Protein farnesyltransferase, | 4e-07 |
| >d1w6ka1 a.102.4.2 (A:6-99,A:379-732) Lanosterol synthase {Human (Homo sapiens) [TaxId: 9606]} Length = 448 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha/alpha toroid superfamily: Terpenoid cyclases/Protein prenyltransferases family: Terpene synthases domain: Lanosterol synthase species: Human (Homo sapiens) [TaxId: 9606]
Score = 263 bits (674), Expect = 2e-87
Identities = 88/234 (37%), Positives = 133/234 (56%), Gaps = 7/234 (2%)
Query: 1 MQSETGGVPAWEPTGAPSWLELLNPIEFLDEVIIEYDKVECTASALKAMTLFKKLYPKHR 60
M++ GG +E LELLNP E +++I+Y VECT++ ++A+ F K +P+HR
Sbjct: 209 MRNPDGGFATYETKRGGHLLELLNPSEVFGDIMIDYTYVECTSAVMQALKYFHKRFPEHR 268
Query: 61 TKEVKNFIAKATKFIEDIQKSDGSWYGSWGICFTYAAWFAISGLVAAKKTYSN---CLAI 117
E++ + + +F Q++DGSW GSWG+CFTY WF + +TY + C +
Sbjct: 269 AAEIRETLTQGLEFCRRQQRADGSWEGSWGVCFTYGTWFGLEAFACMGQTYRDGTACAEV 328
Query: 118 RKATDFLLKIQCEDGGWGESYRSCPNKKYIPLDGNRSNLVQTAWAMMSLIHAGQMERDPT 177
+A DFLL Q DGGWGE + SC ++Y+ +S + T WAMM L+ D
Sbjct: 329 SRACDFLLSRQMADGGWGEDFESCEERRYVQ--SAQSQIHNTCWAMMGLMAVR--HPDIE 384
Query: 178 PLHRAAKLLINSQLEDGDFPQQELTGVFMENCMLHYPIYRNIFPMWALAEYRSR 231
R + L+ QL +GD+PQ+ + GVF ++C + Y YRNIFP+WAL +
Sbjct: 385 AQERGVRCLLEKQLPNGDWPQENIAGVFNKSCAISYTSYRNIFPIWALGRFSQL 438
|
| >d1w6ka1 a.102.4.2 (A:6-99,A:379-732) Lanosterol synthase {Human (Homo sapiens) [TaxId: 9606]} Length = 448 | Back information, alignment and structure |
|---|
| >d1w6ka1 a.102.4.2 (A:6-99,A:379-732) Lanosterol synthase {Human (Homo sapiens) [TaxId: 9606]} Length = 448 | Back information, alignment and structure |
|---|
| >d2sqca1 a.102.4.2 (A:8-36,A:308-630) Squalene-hopene cyclase {Alicyclobacillus acidocaldarius [TaxId: 405212]} Length = 352 | Back information, alignment and structure |
|---|
| >d2sqca1 a.102.4.2 (A:8-36,A:308-630) Squalene-hopene cyclase {Alicyclobacillus acidocaldarius [TaxId: 405212]} Length = 352 | Back information, alignment and structure |
|---|
| >d2sqca1 a.102.4.2 (A:8-36,A:308-630) Squalene-hopene cyclase {Alicyclobacillus acidocaldarius [TaxId: 405212]} Length = 352 | Back information, alignment and structure |
|---|
| >d1r76a_ a.102.5.1 (A:) Polygalacturonic acid lyase (pectate lyase) {Azospirillum irakense [TaxId: 34011]} Length = 408 | Back information, alignment and structure |
|---|
| >d1r76a_ a.102.5.1 (A:) Polygalacturonic acid lyase (pectate lyase) {Azospirillum irakense [TaxId: 34011]} Length = 408 | Back information, alignment and structure |
|---|
| >d3dssb1 a.102.4.3 (B:7-331) Rab geranylgeranyltransferase, beta subunit {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 325 | Back information, alignment and structure |
|---|
| >d1gxma_ a.102.5.1 (A:) Polygalacturonic acid lyase (pectate lyase) {Cellvibrio cellulosa [TaxId: 155077]} Length = 324 | Back information, alignment and structure |
|---|
| >d1gxma_ a.102.5.1 (A:) Polygalacturonic acid lyase (pectate lyase) {Cellvibrio cellulosa [TaxId: 155077]} Length = 324 | Back information, alignment and structure |
|---|
| >d1gxma_ a.102.5.1 (A:) Polygalacturonic acid lyase (pectate lyase) {Cellvibrio cellulosa [TaxId: 155077]} Length = 324 | Back information, alignment and structure |
|---|
| >d2h6fb1 a.102.4.3 (B:521-921) Protein farnesyltransferase, beta-subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 401 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 238 | |||
| d1w6ka1 | 448 | Lanosterol synthase {Human (Homo sapiens) [TaxId: | 100.0 | |
| d2sqca1 | 352 | Squalene-hopene cyclase {Alicyclobacillus acidocal | 100.0 | |
| d2sqca1 | 352 | Squalene-hopene cyclase {Alicyclobacillus acidocal | 99.92 | |
| d1w6ka1 | 448 | Lanosterol synthase {Human (Homo sapiens) [TaxId: | 99.92 | |
| d3dssb1 | 325 | Rab geranylgeranyltransferase, beta subunit {Rat ( | 99.83 | |
| d2h6fb1 | 401 | Protein farnesyltransferase, beta-subunit {Human ( | 99.76 | |
| d1r76a_ | 408 | Polygalacturonic acid lyase (pectate lyase) {Azosp | 99.72 | |
| d1hzfa_ | 326 | C4adg fragment of complement factor C4a {Human (Ho | 99.71 | |
| d3dssb1 | 325 | Rab geranylgeranyltransferase, beta subunit {Rat ( | 99.68 | |
| d1c3da_ | 294 | C3D, a C3 fragment and ligand for complement recep | 99.65 | |
| d2sqca2 | 271 | Squalene-hopene cyclase {Alicyclobacillus acidocal | 99.65 | |
| d2h6fb1 | 401 | Protein farnesyltransferase, beta-subunit {Human ( | 99.59 | |
| d1gxma_ | 324 | Polygalacturonic acid lyase (pectate lyase) {Cellv | 99.58 | |
| d2sqca2 | 271 | Squalene-hopene cyclase {Alicyclobacillus acidocal | 99.56 | |
| d1n4qb_ | 346 | Protein farnesyltransferase, beta-subunit {Rat (Ra | 99.53 | |
| d1n4qb_ | 346 | Protein farnesyltransferase, beta-subunit {Rat (Ra | 99.49 | |
| d1r76a_ | 408 | Polygalacturonic acid lyase (pectate lyase) {Azosp | 99.33 | |
| d1gxma_ | 324 | Polygalacturonic acid lyase (pectate lyase) {Cellv | 99.24 | |
| d1hzfa_ | 326 | C4adg fragment of complement factor C4a {Human (Ho | 99.01 | |
| d1w6ka2 | 279 | Lanosterol synthase {Human (Homo sapiens) [TaxId: | 98.78 | |
| d1w6ka2 | 279 | Lanosterol synthase {Human (Homo sapiens) [TaxId: | 98.59 | |
| d1c3da_ | 294 | C3D, a C3 fragment and ligand for complement recep | 98.39 | |
| d1lf6a1 | 397 | Bacterial glucoamylase, C-terminal domain {Thermoa | 97.35 | |
| d1ulva1 | 413 | Glucodextranase, domain A {Arthrobacter globiformi | 97.18 | |
| d1nc5a_ | 363 | Hypothetical protein YteR {Bacillus subtilis [TaxI | 96.27 | |
| d1lf6a1 | 397 | Bacterial glucoamylase, C-terminal domain {Thermoa | 95.75 | |
| d1ulva1 | 413 | Glucodextranase, domain A {Arthrobacter globiformi | 94.64 | |
| d1fp3a_ | 402 | N-acyl-D-glucosamine 2-epimerase {Pig (Sus scrofa) | 93.77 | |
| d1fp3a_ | 402 | N-acyl-D-glucosamine 2-epimerase {Pig (Sus scrofa) | 92.16 | |
| d2afaa1 | 411 | Putative NAG isomerase YihS {Salmonella typhimuriu | 91.86 | |
| d1nc5a_ | 363 | Hypothetical protein YteR {Bacillus subtilis [TaxI | 91.86 | |
| d2d5ja1 | 377 | Unsaturated glucuronyl hydrolase {Bacillus sp. GL1 | 91.42 | |
| d2d5ja1 | 377 | Unsaturated glucuronyl hydrolase {Bacillus sp. GL1 | 85.09 |
| >d1w6ka1 a.102.4.2 (A:6-99,A:379-732) Lanosterol synthase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha/alpha toroid superfamily: Terpenoid cyclases/Protein prenyltransferases family: Terpene synthases domain: Lanosterol synthase species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1e-51 Score=369.49 Aligned_cols=233 Identities=38% Similarity=0.855 Sum_probs=214.6
Q ss_pred CCCCCCCcccccCCCCchhhhccCcccccccccccCCCcchHHHHHHHHHHHHhhCCCcchHHHHHHHHHHHHHHHHhcc
Q 026485 1 MQSETGGVPAWEPTGAPSWLELLNPIEFLDEVIIEYDKVECTASALKAMTLFKKLYPKHRTKEVKNFIAKATKFIEDIQK 80 (238)
Q Consensus 1 ~qn~dGg~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~Ta~~l~aL~~~~~~~~~~~~~~~~~~i~~a~~~L~~~Q~ 80 (238)
|||+||||++|+..++..||+.++|++.|++.++|+|++|+|+++|++|..++...|..+..++++.|+++++||++.|+
T Consensus 209 mQn~dGGw~afd~~~~~~~l~~~~~~~~~~~~~~D~s~~d~T~~~l~aL~~~~~~~p~~r~~~~~~~i~ral~yL~~~Q~ 288 (448)
T d1w6ka1 209 MRNPDGGFATYETKRGGHLLELLNPSEVFGDIMIDYTYVECTSAVMQALKYFHKRFPEHRAAEIRETLTQGLEFCRRQQR 288 (448)
T ss_dssp TCCTTSCBCSSSCCCSCGGGGGGCCCSSCSSCSSCCCBHHHHHHHHHHHHHHHHHCTTSSHHHHHHHHHHHHHHHHHHSC
T ss_pred hcCCCCCeeeccCCCChhhhhcccchhhhhccccCCCcchHHHHHHHHHHHHhhhCCccccccchHHHHHHHHHHHccCC
Confidence 79999999999999999999999999999999999999999999999999999887888888899999999999999999
Q ss_pred cCCCCcccccccchhhhHHHHHHHHHccccC---ccHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcccCCCCCCCCHH
Q 026485 81 SDGSWYGSWGICFTYAAWFAISGLVAAKKTY---SNCLAIRKATDFLLKIQCEDGGWGESYRSCPNKKYIPLDGNRSNLV 157 (238)
Q Consensus 81 ~dG~w~~~~~~~~~~~T~~al~aL~~~g~~~---~~~~~i~~a~~~L~~~Q~~dGgw~~~~~~~~~~~y~~~~~~~~~~~ 157 (238)
+||+|.+.|+.+++|.|++++.+|..+|... ...+.++||++||+++|++||||++...++....|.+ +..|+++
T Consensus 289 ~DGsW~g~wg~~~~ygT~~al~aL~~~G~~~~~~~~~~~v~ka~~wLls~Q~~DGGWge~~~s~~~~~~~~--~~~s~~~ 366 (448)
T d1w6ka1 289 ADGSWEGSWGVCFTYGTWFGLEAFACMGQTYRDGTACAEVSRACDFLLSRQMADGGWGEDFESCEERRYVQ--SAQSQIH 366 (448)
T ss_dssp TTSCCCCSSBSSHHHHHHHHHHHHHHTTCCCBTTBCCHHHHHHHHHHHTTCCTTSCCCBCTHHHHHTSCCB--CSSCCHH
T ss_pred CCCcccccCCCcccHHHHHHHHHHHHhCcCcccccccHHHHHHHHHHHhccCCCCCccCCCccccCcccCC--CCCCcHH
Confidence 9999999999999999999999999998753 2357899999999999999999999876655555654 6689999
Q ss_pred HHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcccCCCCCCCCccccccCCccccccCCchhhHHHHHHHHHHHhccCCCC
Q 026485 158 QTAWAMMSLIHAGQMERDPTPLHRAAKLLINSQLEDGDFPQQELTGVFMENCMLHYPIYRNIFPMWALAEYRSRLLLPEI 237 (238)
Q Consensus 158 ~Ta~al~aL~~~g~~~~~~~~v~~a~~~L~~~Q~~dGgw~~~~~~~~~~~~~~~~~~~~~~~~~l~aL~~~~~~~~~~~~ 237 (238)
.|||||+||..++.. +.++|+||++||+++|++||+|.+..++|+|+++|||+|+.|+.+|||+||+||+++++.+++
T Consensus 367 ~TAwAl~aL~~ag~~--~~~~v~rgv~~L~~~Q~~~G~W~~~~~~g~f~~~~~l~Y~~Y~~~fpl~AL~ry~~~~~~~~~ 444 (448)
T d1w6ka1 367 NTCWAMMGLMAVRHP--DIEAQERGVRCLLEKQLPNGDWPQENIAGVFNKSCAISYTSYRNIFPIWALGRFSQLYPERAL 444 (448)
T ss_dssp HHHHHHHHHHHTTCS--CHHHHHHHHHHHHHHCCTTSCCCCCSCCEEETTTEEECCTTHHHHHHHHHHHHHHHHCTTSGG
T ss_pred HHHHHHHHHHhcCCC--CcHHHHHHHHHHHHccCCCCCCCCCceeeeecccceeecCCcchHHHHHHHHHHHHhCCcccc
Confidence 999999999998865 346999999999999999999999999999999999999999999999999999999987654
|
| >d2sqca1 a.102.4.2 (A:8-36,A:308-630) Squalene-hopene cyclase {Alicyclobacillus acidocaldarius [TaxId: 405212]} | Back information, alignment and structure |
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| >d2sqca1 a.102.4.2 (A:8-36,A:308-630) Squalene-hopene cyclase {Alicyclobacillus acidocaldarius [TaxId: 405212]} | Back information, alignment and structure |
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| >d1w6ka1 a.102.4.2 (A:6-99,A:379-732) Lanosterol synthase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d3dssb1 a.102.4.3 (B:7-331) Rab geranylgeranyltransferase, beta subunit {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
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| >d2h6fb1 a.102.4.3 (B:521-921) Protein farnesyltransferase, beta-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1r76a_ a.102.5.1 (A:) Polygalacturonic acid lyase (pectate lyase) {Azospirillum irakense [TaxId: 34011]} | Back information, alignment and structure |
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| >d1hzfa_ a.102.4.4 (A:) C4adg fragment of complement factor C4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d3dssb1 a.102.4.3 (B:7-331) Rab geranylgeranyltransferase, beta subunit {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
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| >d1c3da_ a.102.4.4 (A:) C3D, a C3 fragment and ligand for complement receptor 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d2sqca2 a.102.4.2 (A:37-307) Squalene-hopene cyclase {Alicyclobacillus acidocaldarius [TaxId: 405212]} | Back information, alignment and structure |
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| >d2h6fb1 a.102.4.3 (B:521-921) Protein farnesyltransferase, beta-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1gxma_ a.102.5.1 (A:) Polygalacturonic acid lyase (pectate lyase) {Cellvibrio cellulosa [TaxId: 155077]} | Back information, alignment and structure |
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| >d2sqca2 a.102.4.2 (A:37-307) Squalene-hopene cyclase {Alicyclobacillus acidocaldarius [TaxId: 405212]} | Back information, alignment and structure |
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| >d1n4qb_ a.102.4.3 (B:) Protein farnesyltransferase, beta-subunit {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
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| >d1n4qb_ a.102.4.3 (B:) Protein farnesyltransferase, beta-subunit {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
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| >d1r76a_ a.102.5.1 (A:) Polygalacturonic acid lyase (pectate lyase) {Azospirillum irakense [TaxId: 34011]} | Back information, alignment and structure |
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| >d1gxma_ a.102.5.1 (A:) Polygalacturonic acid lyase (pectate lyase) {Cellvibrio cellulosa [TaxId: 155077]} | Back information, alignment and structure |
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| >d1hzfa_ a.102.4.4 (A:) C4adg fragment of complement factor C4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1w6ka2 a.102.4.2 (A:100-378) Lanosterol synthase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1w6ka2 a.102.4.2 (A:100-378) Lanosterol synthase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1c3da_ a.102.4.4 (A:) C3D, a C3 fragment and ligand for complement receptor 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1lf6a1 a.102.1.5 (A:288-684) Bacterial glucoamylase, C-terminal domain {Thermoanaerobacterium thermosaccharolyticum [TaxId: 1517]} | Back information, alignment and structure |
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| >d1ulva1 a.102.1.5 (A:274-686) Glucodextranase, domain A {Arthrobacter globiformis [TaxId: 1665]} | Back information, alignment and structure |
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| >d1nc5a_ a.102.1.6 (A:) Hypothetical protein YteR {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
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| >d1lf6a1 a.102.1.5 (A:288-684) Bacterial glucoamylase, C-terminal domain {Thermoanaerobacterium thermosaccharolyticum [TaxId: 1517]} | Back information, alignment and structure |
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| >d1ulva1 a.102.1.5 (A:274-686) Glucodextranase, domain A {Arthrobacter globiformis [TaxId: 1665]} | Back information, alignment and structure |
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| >d1fp3a_ a.102.1.3 (A:) N-acyl-D-glucosamine 2-epimerase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
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| >d1fp3a_ a.102.1.3 (A:) N-acyl-D-glucosamine 2-epimerase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
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| >d2afaa1 a.102.1.3 (A:4-415) Putative NAG isomerase YihS {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
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| >d1nc5a_ a.102.1.6 (A:) Hypothetical protein YteR {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
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| >d2d5ja1 a.102.1.7 (A:1-377) Unsaturated glucuronyl hydrolase {Bacillus sp. GL1 [TaxId: 84635]} | Back information, alignment and structure |
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| >d2d5ja1 a.102.1.7 (A:1-377) Unsaturated glucuronyl hydrolase {Bacillus sp. GL1 [TaxId: 84635]} | Back information, alignment and structure |
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