Citrus Sinensis ID: 026491

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------24
Protein Sequence
MYYCCYVSSSYFFHLEMLDSWFQVGFVLTTGINSAYVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKLHEFGGKRHIRYRDLAGHIYGRRAYALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTMKLPYFIAIAGFVCALFAIGIPNLSALGVWLGVSTVLSTIYIVIAIWLSVRDGLKNPARDYSIPGTTATKIFESIGACANLVFAFNTGMLPEIQVREEFRS
Secondary Structure (PSIPRED)
ccEEEEcccccEEEEEEccccHHHHHHHHHHHHccccHHcHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHcccccEEEHHHHHHHHHHHHHHHHHHHcccHHHHHHHHccccccccccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHEEEccccccccccccccccHHHHHHHHHHHHHHHHHHcccccccccccccccc
Secondary Structure Prediction (SSPRO)
cEEEEEEccccEEEEEccccHEEHHHHHHHHHccHHHHccHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccHEEEEEHHHHHHHHHHHEEEEEEcHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHccccEEEEEEEccccc
Coil and Loop (DISEMBL)
myyccyvsssyFFHLEMLDSWFQVGFVLTTGinsayvlgypgtvmvpLGWIAGVVGLIIATIVSLNANALIAKLHEFGGKRHIRYRDLAGHIYGRRAYALTWGLQYVNLFMINTGYIILAGQALKAAFVLFwkddhtmklPYFIAIAGFVCALFAIGIPNLSALGVWLGVSTVLSTIYIVIAIWLSVRdglknpardysipgttATKIFESIGACANLVFafntgmlpeiQVREEFRS
Flexible Loop (DISEMBL)
MYYCCYVSSSYFFHLEMLDSWFQVGFVLTTGINSAYVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKLHEFGGKRHIRYRDLAGHIYGRRAYALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTMKLPYFIAIAGFVCALFAIGIPNLSALGVWLGVSTVLSTIYIVIAIWLSVRDGLKNPARDYSIPGTTATKIFESIGACANLVFAFNTGMLPEIQVREEFRS
Low Complexity Region (SEG)
MyyccyvsssyFFHLEMLDSWFQVGFVLTTGINSAYVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKLHEFGGKRHIRYRDLAGHIYGRRAYALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTMKLPYFIAIAGFVCALFAIGIPNLSALGVWLGVSTVLSTIYIVIAIWLSVRDGLKNPARDYSIPGTTATKIFESIGACANLVFAFNTGMLPEIQVREEFRS
Disordered region (IsUnstruct)
*YYCCYVSSSYFFHLEMLDSWFQVGFVLTTGINSAYVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKLHEFGGKRHIRYRDLAGHIYGRRAYALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTMKLPYFIAIAGFVCALFAIGIPNLSALGVWLGVSTVLSTIYIVIAIWLSVRDGLKNPARDYSIPGTTATKIFESIGACANLVFAFNTGMLPEI********
Disordered Region (DISOPRED)
***CC**SSSYFFHLEMLDSWFQVGFVLTTGINSAYVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKLHEFGGKRHIRYRDLAGHIYGRRAYALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTMKLPYFIAIAGFVCALFAIGIPNLSALGVWLGVSTVLSTIYIVIAIWLSVRDGLKNPARDYSIPGTTATKIFESIGACANLVFAFNTGMLPEIQVRE****
Disordered Region (DISEMBL)
MYYCCYVSSSYFFHLEMLDSWFQVGFVLTTGINSAYVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKLHEFGGKRHIRYRDLAGHIYGRRAYALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTMKLPYFIAIAGFVCALFAIGIPNLSALGVWLGVSTVLSTIYIVIAIWLSVRDGLKNPARDYSIPGTTATKIFESIGACANLVFAFNTGMLPEIQVREEFRS
Disordered Region (DISPRO)
MYYCCYVSSSYFFHLEMLDSWFQVGFVLTTGINSAYVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKLHEFGGKRHIRYRDLAGHIYGRRAYALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTMKLPYFIAIAGFVCALFAIGIPNLSALGVWLGVSTVLSTIYIVIAIWLSVRDGLKNPARDYSIPGTTATKIFESIGACANLVFAFNTGMLPEIQVREEFRS
Transmembrane Helix (TMHMM)
oooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MYYCCYVSSSYFFHLEMLDSWFQVGFVLTTGINSAYVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKLHEFGGKRHIRYRDLAGHIYGRRAYALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTMKLPYFIAIAGFVCALFAIGIPNLSALGVWLGVSTVLSTIYIVIAIWLSVRDGLKNPARDYSIPGTTATKIFESIGACANLVFAFNTGMLPEIQVREEFRS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	238	2.2.26 [Sep-21-2011]
P92961	442	Proline transporter 1 OS=	yes	no	0.903	0.486	0.788	4e-95
P92962	439	Proline transporter 2 OS=	no	no	0.890	0.482	0.765	3e-91
Q9SJP9	436	Proline transporter 3 OS=	no	no	0.890	0.486	0.760	4e-90
Q69LA1	434	Probable proline transpor	yes	no	0.890	0.488	0.732	7e-88
Q60DN5	473	Proline transporter 1 OS=	no	no	0.911	0.458	0.701	1e-86
Q8L4X4	452	Probable GABA transporter	no	no	0.878	0.462	0.327	1e-13
F4HW02	451	GABA transporter 1 OS=Ara	no	no	0.907	0.478	0.295	2e-11
Q9SR44	441	Lysine histidine transpor	no	no	0.840	0.453	0.266	8e-09
Q9LRB5	441	Lysine histidine transpor	no	no	0.836	0.451	0.275	1e-08
Q9FKS8	446	Lysine histidine transpor	no	no	0.815	0.434	0.287	2e-08

>sp|P92961|PROT1_ARATH Proline transporter 1 OS=Arabidopsis thaliana GN=PROT1 PE=1 SV=1

 Score =  347 bits (890), Expect = 4e-95,   Method: Compositional matrix adjust.
 Identities = 172/218 (78%), Positives = 192/218 (88%), Gaps = 3/218 (1%)

Query: 19  DSWFQVGFVLTTGINSAYVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKLHEFG 78
           DSWFQV FVLTTGINSAYVLGY GT+MVPLGWI GVVGL+IAT +SL AN LIAKLHEFG
Sbjct: 34  DSWFQVAFVLTTGINSAYVLGYSGTIMVPLGWIGGVVGLLIATAISLYANTLIAKLHEFG 93

Query: 79  GKRHIRYRDLAGHIYGRRAYALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTM 138
           G+RHIRYRDLAG IYGR+AY LTWGLQYVNLFMIN G+IILAG ALKA +VLF +DDHTM
Sbjct: 94  GRRHIRYRDLAGFIYGRKAYHLTWGLQYVNLFMINCGFIILAGSALKAVYVLF-RDDHTM 152

Query: 139 KLPYFIAIAGFVCALFAIGIPNLSALGVWLGVSTVLSTIYIVIAIWLSVRDGLKNPARDY 198
           KLP+FIAIAG +CA+FAIGIP+LSALGVWLGVST LS IYIV+AI LSVRDG+K P+RDY
Sbjct: 153 KLPHFIAIAGLICAIFAIGIPHLSALGVWLGVSTFLSLIYIVVAIVLSVRDGVKTPSRDY 212

Query: 199 SIPGTTATKIFESIGACANLVFAFNTGMLPEIQ--VRE 234
            I G++ +K+F   GA ANLVFAFNTGMLPEIQ  VR+
Sbjct: 213 EIQGSSLSKLFTITGAAANLVFAFNTGMLPEIQATVRQ 250

Proline transporter that mediates proline and glycine betaine transport. May be involved in long-distance transport of proline and required for phloem loading, retrieval of proline leaking from the phloem, or in xylem-to-phloem transfer. When expressed in a heterologous system (yeast), imports D- and L-proline, glycine betaine and GABA across the plasma membrane. Has the same affinity for D- and L-proline.
Arabidopsis thaliana (taxid: 3702)

>sp|P92962|PROT2_ARATH Proline transporter 2 OS=Arabidopsis thaliana GN=PROT2 PE=1 SV=1

 Score =  334 bits (857), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 163/213 (76%), Positives = 184/213 (86%), Gaps = 1/213 (0%)

Query: 19  DSWFQVGFVLTTGINSAYVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKLHEFG 78
           DSWFQV FVLTTGINSAYVLGY GTVMVPLGWI GVVGLI+AT +SL AN LIAKLHEFG
Sbjct: 31  DSWFQVAFVLTTGINSAYVLGYSGTVMVPLGWIGGVVGLILATAISLYANTLIAKLHEFG 90

Query: 79  GKRHIRYRDLAGHIYGRRAYALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTM 138
           GKRHIRYRDLAG IYG++ Y +TWGLQYVNLFMIN G+IILAG ALKA +VLF +DD  M
Sbjct: 91  GKRHIRYRDLAGFIYGKKMYRVTWGLQYVNLFMINCGFIILAGSALKAVYVLF-RDDSLM 149

Query: 139 KLPYFIAIAGFVCALFAIGIPNLSALGVWLGVSTVLSTIYIVIAIWLSVRDGLKNPARDY 198
           KLP+FIAIAG VCA+FAIGIP+LSALG+WLGVST+LS IYI++AI LS +DG+  P RDY
Sbjct: 150 KLPHFIAIAGVVCAIFAIGIPHLSALGIWLGVSTILSIIYIIVAIVLSAKDGVNKPERDY 209

Query: 199 SIPGTTATKIFESIGACANLVFAFNTGMLPEIQ 231
           +I G++  K+F   GA ANLVFAFNTGMLPEIQ
Sbjct: 210 NIQGSSINKLFTITGAAANLVFAFNTGMLPEIQ 242

Proline transporter that mediates proline and glycine betaine transport. May be involved in the uptake of compatible solutes from the soil into the roots, or in retrieval of apoplastic amino acids delivered to the roots via the phloem. May be involved in delivery of proline to wounding sites. When expressed in a heterologous system (yeast), imports D- and L-proline, glycine betaine and GABA across the plasma membrane. Has the same affinity for D- and L-proline.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SJP9|PROT3_ARATH Proline transporter 3 OS=Arabidopsis thaliana GN=PROT3 PE=1 SV=1

 Score =  330 bits (847), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 162/213 (76%), Positives = 182/213 (85%), Gaps = 1/213 (0%)

Query: 19  DSWFQVGFVLTTGINSAYVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKLHEFG 78
           DSWFQ  FVLTT INSAYVLGY GTVMVPLGWI GVVGLI+AT +SL AN L+AKLHEFG
Sbjct: 28  DSWFQAAFVLTTSINSAYVLGYSGTVMVPLGWIGGVVGLILATAISLYANTLVAKLHEFG 87

Query: 79  GKRHIRYRDLAGHIYGRRAYALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTM 138
           GKRHIRYRDLAG IYGR+AY LTW LQYVNLFMIN G+IILAG ALKA +VLF +DDH M
Sbjct: 88  GKRHIRYRDLAGFIYGRKAYCLTWVLQYVNLFMINCGFIILAGSALKAVYVLF-RDDHAM 146

Query: 139 KLPYFIAIAGFVCALFAIGIPNLSALGVWLGVSTVLSTIYIVIAIWLSVRDGLKNPARDY 198
           KLP+FIAIAG +CA+FAIGIP+LSALG+WL VST+LS IYIV+AI LSV+DG+K P+RDY
Sbjct: 147 KLPHFIAIAGLICAVFAIGIPHLSALGIWLAVSTILSLIYIVVAIVLSVKDGVKAPSRDY 206

Query: 199 SIPGTTATKIFESIGACANLVFAFNTGMLPEIQ 231
            I G+  +K+F   GA A LVF FNTGMLPEIQ
Sbjct: 207 EIQGSPLSKLFTITGAAATLVFVFNTGMLPEIQ 239

Proline transporter that mediates proline and glycine betaine transport. When expressed in a heterologous system (yeast), imports L-proline, glycine betaine and GABA across the plasma membrane.

Arabidopsis thaliana (taxid: 3702)

>sp|Q69LA1|PROT2_ORYSJ Probable proline transporter 2 OS=Oryza sativa subsp. japonica GN=LOC_Os07g01090 PE=2 SV=1

 Score =  323 bits (827), Expect = 7e-88,   Method: Compositional matrix adjust.
 Identities = 156/213 (73%), Positives = 181/213 (84%), Gaps = 1/213 (0%)

Query: 19  DSWFQVGFVLTTGINSAYVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKLHEFG 78
           D W+QVGFVLTTG+NSAYVLGY G+VMVPLGWI G  GLI+A  +SL ANAL+A+LHE G
Sbjct: 25  DPWYQVGFVLTTGVNSAYVLGYSGSVMVPLGWIGGTCGLILAAAISLYANALLARLHEIG 84

Query: 79  GKRHIRYRDLAGHIYGRRAYALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTM 138
           GKRHIRYRDLAGHIYGR+ Y+LTW LQYVNLFMINTG+IILAGQALKA +VLF +DD  +
Sbjct: 85  GKRHIRYRDLAGHIYGRKMYSLTWALQYVNLFMINTGFIILAGQALKATYVLF-RDDGVL 143

Query: 139 KLPYFIAIAGFVCALFAIGIPNLSALGVWLGVSTVLSTIYIVIAIWLSVRDGLKNPARDY 198
           KLPY IA++GFVCALFA GIP LSAL +WLG ST  S IYI IA  LS+RDG+  PA+DY
Sbjct: 144 KLPYCIALSGFVCALFAFGIPYLSALRIWLGFSTFFSLIYITIAFVLSLRDGITTPAKDY 203

Query: 199 SIPGTTATKIFESIGACANLVFAFNTGMLPEIQ 231
           +IPG+ + +IF +IGA ANLVFA+NTGMLPEIQ
Sbjct: 204 TIPGSHSARIFTTIGAVANLVFAYNTGMLPEIQ 236

Proline transporter that mediates proline transport across the plasma membrane.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q60DN5|PROT1_ORYSJ Proline transporter 1 OS=Oryza sativa subsp. japonica GN=PROT1 PE=2 SV=1

 Score =  318 bits (816), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 153/218 (70%), Positives = 183/218 (83%), Gaps = 1/218 (0%)

Query: 14  HLEMLDSWFQVGFVLTTGINSAYVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAK 73
           H   +D W+QVGF+LTTG+NSAYVLGY  ++MVPLGWI G  GLI+A  +S+ ANAL+A 
Sbjct: 59  HQISIDPWYQVGFILTTGVNSAYVLGYSASIMVPLGWIGGTCGLILAAAISMYANALLAH 118

Query: 74  LHEFGGKRHIRYRDLAGHIYGRRAYALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWK 133
           LHE GGKRHIRYRDLAGHIYGR+ Y+LTW LQYVNLFMINTG IILAGQALKA +VLF +
Sbjct: 119 LHEVGGKRHIRYRDLAGHIYGRKMYSLTWALQYVNLFMINTGLIILAGQALKAIYVLF-R 177

Query: 134 DDHTMKLPYFIAIAGFVCALFAIGIPNLSALGVWLGVSTVLSTIYIVIAIWLSVRDGLKN 193
           DD  +KLPY IA++GFVCALFA GIP LSAL +WLG+STV S IYI+IA  +S+RDG+  
Sbjct: 178 DDGVLKLPYCIALSGFVCALFAFGIPYLSALRIWLGLSTVFSLIYIMIAFVMSLRDGITT 237

Query: 194 PARDYSIPGTTATKIFESIGACANLVFAFNTGMLPEIQ 231
           PA+DY+IPG+ + +IF +IGA ANLVFA+NTGMLPEIQ
Sbjct: 238 PAKDYTIPGSHSDRIFTTIGAVANLVFAYNTGMLPEIQ 275

Proline transporter that mediates proline transport across the plasma membrane when expressed in a heterologous system (Xenopus oocytes).

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q8L4X4|GAT2_ARATH Probable GABA transporter 2 OS=Arabidopsis thaliana GN=At5g41800 PE=2 SV=1

 Score = 77.0 bits (188), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 76/232 (32%), Positives = 114/232 (49%), Gaps = 23/232 (9%)

Query: 13  FHLEMLDSWFQVGFVLTTGINSAYVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIA 72
           F L+    W+  GF LTT I    +L  P      LGW  G V L    +V+  A  L++
Sbjct: 23  FVLQSKGEWWHAGFHLTTAIVGPTILTLP-YAFRGLGWWLGFVCLTTMGLVTFYAYYLMS 81

Query: 73  KL---HEFGGKRHIRYRDLAGHIYGRRAYALTWGLQ-YVNLFM---INTGY----IILAG 121
           K+    E  G+RHIR+R+LA  + G        GL  YV +F+   INTG     I+LAG
Sbjct: 82  KVLDHCEKSGRRHIRFRELAADVLGS-------GLMFYVVIFIQTAINTGIGIGAILLAG 134

Query: 122 QALKAAFVLFWKDDHTMKLPYFIAIAGFVCALFAIGIPNLSALGVWLGVSTVLSTIYIVI 181
           Q L   +   +    T+KL  FIA+   V  + +  +P+  +L      S +LS  Y  +
Sbjct: 135 QCLDIMYSSLFPQG-TLKLYEFIAMVTVVMMVLS-QLPSFHSLRHINCASLLLSLGYTFL 192

Query: 182 AIWLSVRDGL-KN-PARDYSIPGTTATKIFESIGACANLVFAFNTGMLPEIQ 231
            +   +  GL KN P R+YS+  + + K+F +  + + +   F  G+LPEIQ
Sbjct: 193 VVGACINLGLSKNAPKREYSLEHSDSGKVFSAFTSISIIAAIFGNGILPEIQ 244

May be involved in the transport of GABA.

Arabidopsis thaliana (taxid: 3702)

>sp|F4HW02|GAT1_ARATH GABA transporter 1 OS=Arabidopsis thaliana GN=GAT1 PE=1 SV=1

 Score = 69.7 bits (169), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 70/237 (29%), Positives = 112/237 (47%), Gaps = 21/237 (8%)

Query: 7   VSSSYFFHLEMLDSWFQVGFVLTTGINSAYVLGYPGTVMVPLGWIAGVVGLIIATIVSLN 66
           V +   F L+   +W+  GF LTT I +  +L  P      LGW AG+  L+    V+  
Sbjct: 18  VDAGSLFVLKSKGTWWHCGFHLTTSIVAPALLSLPYAFKF-LGWAAGISCLVGGAAVTFY 76

Query: 67  ANALIA---KLHEFGGKRHIRYRDLAGHIYGRRAYALTWGLQYVNLFMINTGY------I 117
           +  L++   + H   G R++R+RD+A HI   +     WG  YV    +   Y       
Sbjct: 77  SYTLLSLTLEHHASLGNRYLRFRDMAHHILSPK-----WGRYYVGPIQMAVCYGVVIANA 131

Query: 118 ILAGQALKAAFVLFWKDDHTMKLPYFIAIAGFVCALFAIG-IPNLSALGVWLGVSTVLST 176
           +L GQ LKA +++  + +  MKL  F+ I G  C L  +   P+  +L     +S +L  
Sbjct: 132 LLGGQCLKAMYLVV-QPNGEMKLFEFVIIFG--CLLLVLAQFPSFHSLRYINSLSLLLCL 188

Query: 177 IYIVIAIWLSVRDGLKN--PARDYSIPGTTATKIFESIGACANLVFAFNTGMLPEIQ 231
           +Y   A   S+  G +   P +DY+I G   T++F    A A +   +  G++PEIQ
Sbjct: 189 LYSASAAAASIYIGKEPNAPEKDYTIVGDPETRVFGIFNAMAIIATTYGNGIIPEIQ 245

High affinity gamma-aminobutyric acid (GABA) transporter probably involved in GABA uptake into cells. When expressed in a heterologous system (Xenopus oocytes), imports GABA, butylamine, beta- and L-Alanine, 5-aminovaleric acid, 6-aminocaproic acid and 8-aminocaprylic acid, but does not mediate the transport of proline or glycine betaine.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SR44|LHTL2_ARATH Lysine histidine transporter-like 2 OS=Arabidopsis thaliana GN=At1g67640 PE=2 SV=1

 Score = 60.8 bits (146), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 55/206 (26%), Positives = 98/206 (47%), Gaps = 6/206 (2%)

Query: 20  SWFQVGFVLTTGINSAYVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKLHEF-G 78
            W+   F   T +  A VL  P   M  LGW  GV  +I++ +++      + ++HE   
Sbjct: 32  KWWYSAFHNVTAMVGAGVLSLP-YAMSNLGWGPGVTIMIMSWLITFYTLWQMVQMHEMVP 90

Query: 79  GKRHIRYRDLAGHIYGRR-AYALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHT 137
           GKR  RY +L  H +G +    +    Q +    ++  Y++  G++LK    L   D   
Sbjct: 91  GKRFDRYHELGQHAFGEKLGLWIVVPQQLIVEVGVDIVYMVTGGKSLKKIHDLLCTDCKN 150

Query: 138 MKLPYFIAIAGFVCALFAIGIPNLSALGVWLGVSTVLSTIYIVIAIWLSVRDGLKNPARD 197
           ++  Y+I I   +  + A  +PN +++ +    + V+S  Y  IA   SV+ G+ +P  D
Sbjct: 151 IRTTYWIMIFASIHFVLA-HLPNFNSISIVSLAAAVMSLSYSTIAWATSVKKGV-HPNVD 208

Query: 198 YSI-PGTTATKIFESIGACANLVFAF 222
           YS    TT+  +F  + A  ++ FA+
Sbjct: 209 YSSRASTTSGNVFNFLNALGDVAFAY 234

Amino acid transporter.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LRB5|LHT2_ARATH Lysine histidine transporter 2 OS=Arabidopsis thaliana GN=LHT2 PE=1 SV=1

 Score = 60.1 bits (144), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 57/207 (27%), Positives = 97/207 (46%), Gaps = 8/207 (3%)

Query: 20  SWFQVGFVLTTGINSAYVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKLHEF-G 78
            W+   F   T +  A VL  P   M  LGW  GV  ++++ I++L     + ++HE   
Sbjct: 32  KWWYSAFHNVTAMVGAGVLSLP-YAMSNLGWGPGVTIMVMSWIITLYTLWQMVEMHEIVP 90

Query: 79  GKRHIRYRDLAGHIYGRR-AYALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHT 137
           GKR  RY +L  H +G +    +    Q +    ++  Y++  G +LK    L   D   
Sbjct: 91  GKRLDRYHELGQHAFGEKLGLWIVVPQQLIVEVGVDIVYMVTGGASLKKVHQLVCPDCKE 150

Query: 138 MKLPYFIAIAGFVCALFAIG-IPNLSALGVWLGVSTVLSTIYIVIAIWLSVRDGLKNPAR 196
           ++  ++I I  F    F I  +PN +++ +    + V+S  Y  IA   SV  G+ +P  
Sbjct: 151 IRTTFWIMI--FASVHFVISHLPNFNSISIISLAAAVMSLTYSTIAWAASVHKGV-HPDV 207

Query: 197 DYSIPGTTAT-KIFESIGACANLVFAF 222
           DYS   +T   K+F  + A  ++ FA+
Sbjct: 208 DYSPRASTDVGKVFNFLNALGDVAFAY 234

Amino acid-proton symporter. Transporter with a broad specificity for neutral and acidic amino acids. Basic amino acids are only marginally transported. Involved in import of amino acids into the tapetum cells for synthesis of compounds important for microspore structure.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FKS8|LHT1_ARATH Lysine histidine transporter 1 OS=Arabidopsis thaliana GN=LHT1 PE=1 SV=1

 Score = 59.3 bits (142), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 61/212 (28%), Positives = 97/212 (45%), Gaps = 18/212 (8%)

Query: 20  SWFQVGFVLTTGINSAYVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKLHEF-G 78
            W+   F   T +  A VLG P   M  LGW  G+  L+++ +++L     + ++HE   
Sbjct: 37  KWWYSAFHNVTAMVGAGVLGLP-YAMSQLGWGPGIAVLVLSWVITLYTLWQMVEMHEMVP 95

Query: 79  GKRHIRYRDLAGHIYGRRAYALTWGLQYV--NLFMINTG----YIILAGQALKAAFVLFW 132
           GKR  RY +L  H +G +      GL  V     ++  G    Y++  G++LK    L  
Sbjct: 96  GKRFDRYHELGQHAFGEKL-----GLYIVVPQQLIVEIGVCIVYMVTGGKSLKKFHELVC 150

Query: 133 KDDHTMKLPYFIAIAGFVCALFAIG-IPNLSAL-GVWLGVSTVLSTIYIVIAIWLSVRDG 190
            D   +KL YFI I  F    F +  +PN +++ GV L  + V+S  Y  IA   S   G
Sbjct: 151 DDCKPIKLTYFIMI--FASVHFVLSHLPNFNSISGVSLA-AAVMSLSYSTIAWASSASKG 207

Query: 191 LKNPARDYSIPGTTATKIFESIGACANLVFAF 222
           ++   +      TTA  +F       ++ FA+
Sbjct: 208 VQEDVQYGYKAKTTAGTVFNFFSGLGDVAFAY 239

Amino acid-proton symporter. Transporter with a broad specificity for histidine, lysine, glutamic acid, alanine, serine, proline and glycine. Involved in both apoplastic transport of amino acids in leaves and their uptake by roots.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	238
224112617	445	proline transporter [Populus trichocarpa	0.890	0.476	0.821	5e-96
224098499	433	proline transporter [Populus trichocarpa	0.890	0.489	0.798	7e-94
357492515	578	Proline transporter [Medicago truncatula	0.911	0.375	0.779	9e-94
15225591	442	proline transporter 1 [Arabidopsis thali	0.903	0.486	0.788	2e-93
21593453	442	proline transporter 1 [Arabidopsis thali	0.903	0.486	0.784	7e-93
297823895	442	hypothetical protein ARALYDRAFT_483024 [	0.903	0.486	0.784	8e-93
255579112	443	amino acid transporter, putative [Ricinu	0.890	0.478	0.779	2e-92
449465033	433	PREDICTED: proline transporter 1-like [C	0.899	0.494	0.784	2e-91
225449240	471	PREDICTED: lysine histidine transporter	0.890	0.450	0.774	4e-91
296086111	441	unnamed protein product [Vitis vinifera]	0.890	0.480	0.774	1e-90

>gi|224112617|ref|XP_002316242.1| proline transporter [Populus trichocarpa] gi|222865282|gb|EEF02413.1| proline transporter [Populus trichocarpa]

 Score =  356 bits (913), Expect = 5e-96,   Method: Compositional matrix adjust.
 Identities = 175/213 (82%), Positives = 193/213 (90%), Gaps = 1/213 (0%)

Query: 19  DSWFQVGFVLTTGINSAYVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKLHEFG 78
           DSWFQVGFVLTTGINSAYVLGY GT+MVPLGWI GVVGLIIAT +SL AN+LIA+LHEFG
Sbjct: 37  DSWFQVGFVLTTGINSAYVLGYSGTIMVPLGWIPGVVGLIIATAISLYANSLIAELHEFG 96

Query: 79  GKRHIRYRDLAGHIYGRRAYALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTM 138
           G+RHIRYRDLAG IYGR+AY+LTWGLQYVNLFMINTGYIILAG ALKA +VLF  DDH M
Sbjct: 97  GRRHIRYRDLAGFIYGRKAYSLTWGLQYVNLFMINTGYIILAGSALKAVYVLF-SDDHVM 155

Query: 139 KLPYFIAIAGFVCALFAIGIPNLSALGVWLGVSTVLSTIYIVIAIWLSVRDGLKNPARDY 198
           KLPYFIAI+GFVCALFA+ IP+LSAL +WLGVSTV S IYIV+A  LSV+DG++ PARDY
Sbjct: 156 KLPYFIAISGFVCALFAMSIPHLSALRLWLGVSTVFSLIYIVVAFVLSVKDGIEAPARDY 215

Query: 199 SIPGTTATKIFESIGACANLVFAFNTGMLPEIQ 231
           SIPGTT +KIF +IGA ANLVFAFNTGMLPEIQ
Sbjct: 216 SIPGTTRSKIFTTIGASANLVFAFNTGMLPEIQ 248

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224098499|ref|XP_002311196.1| proline transporter [Populus trichocarpa] gi|222851016|gb|EEE88563.1| proline transporter [Populus trichocarpa]

 Score =  349 bits (895), Expect = 7e-94,   Method: Compositional matrix adjust.
 Identities = 170/213 (79%), Positives = 191/213 (89%), Gaps = 1/213 (0%)

Query: 19  DSWFQVGFVLTTGINSAYVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKLHEFG 78
           DSWFQVGFVLTTGINSAYVLGY GT+MVPLGWI GV+GLIIAT +SL AN+L+AKLHEFG
Sbjct: 25  DSWFQVGFVLTTGINSAYVLGYSGTIMVPLGWIPGVIGLIIATAISLYANSLVAKLHEFG 84

Query: 79  GKRHIRYRDLAGHIYGRRAYALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTM 138
           G+RHIRYRDLAG IYGR+AY++TW LQYVNLFMINTGYIILAG ALKA +VLF  DD  M
Sbjct: 85  GRRHIRYRDLAGFIYGRKAYSITWALQYVNLFMINTGYIILAGSALKAFYVLF-SDDQVM 143

Query: 139 KLPYFIAIAGFVCALFAIGIPNLSALGVWLGVSTVLSTIYIVIAIWLSVRDGLKNPARDY 198
           KLPYFIAI+GFVCALF I IP+LSAL +WLGVSTVLS IYIV+A  LSV+DG++ P+RDY
Sbjct: 144 KLPYFIAISGFVCALFGISIPHLSALRLWLGVSTVLSLIYIVVAFVLSVKDGIEAPSRDY 203

Query: 199 SIPGTTATKIFESIGACANLVFAFNTGMLPEIQ 231
           +IPGTT +KIF +IGA ANLVFAFNTGMLPEIQ
Sbjct: 204 NIPGTTTSKIFTTIGASANLVFAFNTGMLPEIQ 236

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357492515|ref|XP_003616546.1| Proline transporter [Medicago truncatula] gi|355517881|gb|AES99504.1| Proline transporter [Medicago truncatula]

 Score =  348 bits (894), Expect = 9e-94,   Method: Compositional matrix adjust.
 Identities = 170/218 (77%), Positives = 193/218 (88%), Gaps = 1/218 (0%)

Query: 14  HLEMLDSWFQVGFVLTTGINSAYVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAK 73
           H    DSWFQVGFVLTTGINSAYVLGY GT+MVPLGWI GVVGLI+AT +SL ANALIA 
Sbjct: 165 HQISTDSWFQVGFVLTTGINSAYVLGYSGTIMVPLGWIGGVVGLILATAISLYANALIAM 224

Query: 74  LHEFGGKRHIRYRDLAGHIYGRRAYALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWK 133
           LHEFGG RHIRYRDLAG+IYGR+AY+LTW LQYVNLFMINTG+IILAG ALKA +VLF +
Sbjct: 225 LHEFGGTRHIRYRDLAGYIYGRKAYSLTWTLQYVNLFMINTGFIILAGSALKAVYVLF-R 283

Query: 134 DDHTMKLPYFIAIAGFVCALFAIGIPNLSALGVWLGVSTVLSTIYIVIAIWLSVRDGLKN 193
           DD  MKLP+FIAIAG VCA+FAI IP+LSALG+WLG STVLS  YIVIA+ LS++DG+K+
Sbjct: 284 DDDQMKLPHFIAIAGLVCAMFAICIPHLSALGIWLGFSTVLSLAYIVIALVLSLKDGIKS 343

Query: 194 PARDYSIPGTTATKIFESIGACANLVFAFNTGMLPEIQ 231
           PARDYS+PGT+ +KIF +IGA ANLVFA+NTGMLPEIQ
Sbjct: 344 PARDYSVPGTSTSKIFTTIGASANLVFAYNTGMLPEIQ 381

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15225591|ref|NP_181518.1| proline transporter 1 [Arabidopsis thaliana] gi|145330699|ref|NP_001078025.1| proline transporter 1 [Arabidopsis thaliana] gi|75220394|sp|P92961.1|PROT1_ARATH RecName: Full=Proline transporter 1; Short=AtPROT1 gi|1769901|emb|CAA65052.1| proline transporter 1 [Arabidopsis thaliana] gi|2088642|gb|AAB95274.1| proline transporter 1 [Arabidopsis thaliana] gi|330254651|gb|AEC09745.1| proline transporter 1 [Arabidopsis thaliana] gi|330254652|gb|AEC09746.1| proline transporter 1 [Arabidopsis thaliana]

 Score =  347 bits (890), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 172/218 (78%), Positives = 192/218 (88%), Gaps = 3/218 (1%)

Query: 19  DSWFQVGFVLTTGINSAYVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKLHEFG 78
           DSWFQV FVLTTGINSAYVLGY GT+MVPLGWI GVVGL+IAT +SL AN LIAKLHEFG
Sbjct: 34  DSWFQVAFVLTTGINSAYVLGYSGTIMVPLGWIGGVVGLLIATAISLYANTLIAKLHEFG 93

Query: 79  GKRHIRYRDLAGHIYGRRAYALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTM 138
           G+RHIRYRDLAG IYGR+AY LTWGLQYVNLFMIN G+IILAG ALKA +VLF +DDHTM
Sbjct: 94  GRRHIRYRDLAGFIYGRKAYHLTWGLQYVNLFMINCGFIILAGSALKAVYVLF-RDDHTM 152

Query: 139 KLPYFIAIAGFVCALFAIGIPNLSALGVWLGVSTVLSTIYIVIAIWLSVRDGLKNPARDY 198
           KLP+FIAIAG +CA+FAIGIP+LSALGVWLGVST LS IYIV+AI LSVRDG+K P+RDY
Sbjct: 153 KLPHFIAIAGLICAIFAIGIPHLSALGVWLGVSTFLSLIYIVVAIVLSVRDGVKTPSRDY 212

Query: 199 SIPGTTATKIFESIGACANLVFAFNTGMLPEIQ--VRE 234
            I G++ +K+F   GA ANLVFAFNTGMLPEIQ  VR+
Sbjct: 213 EIQGSSLSKLFTITGAAANLVFAFNTGMLPEIQATVRQ 250

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21593453|gb|AAM65420.1| proline transporter 1 [Arabidopsis thaliana]

 Score =  345 bits (886), Expect = 7e-93,   Method: Compositional matrix adjust.
 Identities = 171/218 (78%), Positives = 191/218 (87%), Gaps = 3/218 (1%)

Query: 19  DSWFQVGFVLTTGINSAYVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKLHEFG 78
           DSWFQV FVLTTGINSAYVLGY GT+MVPLGWI GVVGL+IAT +SL  N LIAKLHEFG
Sbjct: 34  DSWFQVAFVLTTGINSAYVLGYSGTIMVPLGWIGGVVGLLIATAISLYTNTLIAKLHEFG 93

Query: 79  GKRHIRYRDLAGHIYGRRAYALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTM 138
           G+RHIRYRDLAG IYGR+AY LTWGLQYVNLFMIN G+IILAG ALKA +VLF +DDHTM
Sbjct: 94  GRRHIRYRDLAGFIYGRKAYHLTWGLQYVNLFMINCGFIILAGSALKAVYVLF-RDDHTM 152

Query: 139 KLPYFIAIAGFVCALFAIGIPNLSALGVWLGVSTVLSTIYIVIAIWLSVRDGLKNPARDY 198
           KLP+FIAIAG +CA+FAIGIP+LSALGVWLGVST LS IYIV+AI LSVRDG+K P+RDY
Sbjct: 153 KLPHFIAIAGLICAIFAIGIPHLSALGVWLGVSTFLSLIYIVVAIVLSVRDGVKTPSRDY 212

Query: 199 SIPGTTATKIFESIGACANLVFAFNTGMLPEIQ--VRE 234
            I G++ +K+F   GA ANLVFAFNTGMLPEIQ  VR+
Sbjct: 213 EIQGSSLSKLFTITGAAANLVFAFNTGMLPEIQATVRQ 250

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297823895|ref|XP_002879830.1| hypothetical protein ARALYDRAFT_483024 [Arabidopsis lyrata subsp. lyrata] gi|297325669|gb|EFH56089.1| hypothetical protein ARALYDRAFT_483024 [Arabidopsis lyrata subsp. lyrata]

 Score =  345 bits (885), Expect = 8e-93,   Method: Compositional matrix adjust.
 Identities = 171/218 (78%), Positives = 191/218 (87%), Gaps = 3/218 (1%)

Query: 19  DSWFQVGFVLTTGINSAYVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKLHEFG 78
           DSWFQV FVLTTGINSAYVLGY GT+MVPLGWI GVVGLI+AT +SL AN LIAKLHEFG
Sbjct: 34  DSWFQVAFVLTTGINSAYVLGYSGTIMVPLGWIGGVVGLILATAISLYANTLIAKLHEFG 93

Query: 79  GKRHIRYRDLAGHIYGRRAYALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTM 138
           G+RHIRYRDLAG IYGR+AY LTWGLQYVNLFMIN G+IILAG ALKA +VLF +DDHTM
Sbjct: 94  GRRHIRYRDLAGFIYGRKAYHLTWGLQYVNLFMINCGFIILAGSALKAVYVLF-RDDHTM 152

Query: 139 KLPYFIAIAGFVCALFAIGIPNLSALGVWLGVSTVLSTIYIVIAIWLSVRDGLKNPARDY 198
           KLP+FIAIAG +CA+FAIGIP+LSALGVWL VST LS IYIV+AI LSVRDG+K P+RDY
Sbjct: 153 KLPHFIAIAGLICAIFAIGIPHLSALGVWLAVSTFLSLIYIVVAIVLSVRDGVKTPSRDY 212

Query: 199 SIPGTTATKIFESIGACANLVFAFNTGMLPEIQ--VRE 234
            I G++ +K+F   GA ANLVFAFNTGMLPEIQ  VR+
Sbjct: 213 EIQGSSLSKLFTITGAAANLVFAFNTGMLPEIQATVRQ 250

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255579112|ref|XP_002530404.1| amino acid transporter, putative [Ricinus communis] gi|223530053|gb|EEF31974.1| amino acid transporter, putative [Ricinus communis]

 Score =  344 bits (883), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 166/213 (77%), Positives = 191/213 (89%), Gaps = 1/213 (0%)

Query: 19  DSWFQVGFVLTTGINSAYVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKLHEFG 78
           DSWFQVGFVLTTGINSAYVLGY G +MVPLGWIAGVVGL++A  +SL AN+L+AKLHE+G
Sbjct: 35  DSWFQVGFVLTTGINSAYVLGYSGIIMVPLGWIAGVVGLVLAAAISLYANSLVAKLHEYG 94

Query: 79  GKRHIRYRDLAGHIYGRRAYALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTM 138
           GKRHIRYRDLAG+IYG++AY++TWGLQYVNLFMINTGYIILAGQALKA +VL+ +DDH M
Sbjct: 95  GKRHIRYRDLAGYIYGKKAYSITWGLQYVNLFMINTGYIILAGQALKAVYVLY-RDDHEM 153

Query: 139 KLPYFIAIAGFVCALFAIGIPNLSALGVWLGVSTVLSTIYIVIAIWLSVRDGLKNPARDY 198
           KLPYFIAIAGFVC LFAI  P+LSAL +WLGVSTVLS IYI++AI LS++DG+  P RDY
Sbjct: 154 KLPYFIAIAGFVCTLFAIATPHLSALRIWLGVSTVLSLIYIIVAIVLSIKDGVNAPPRDY 213

Query: 199 SIPGTTATKIFESIGACANLVFAFNTGMLPEIQ 231
           SIPG++  KIF SIG  A+LVFAFNTGMLPEIQ
Sbjct: 214 SIPGSSTAKIFTSIGGGASLVFAFNTGMLPEIQ 246

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449465033|ref|XP_004150233.1| PREDICTED: proline transporter 1-like [Cucumis sativus] gi|449506530|ref|XP_004162775.1| PREDICTED: proline transporter 1-like [Cucumis sativus]

 Score =  340 bits (873), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 171/218 (78%), Positives = 188/218 (86%), Gaps = 4/218 (1%)

Query: 19  DSWFQVGFVLTTGINSAYVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKLHEFG 78
           DSWFQ GFVLTTGINSAYVLGY GT+MVPLGWI GVVGLI AT +SL AN LIAKLHEFG
Sbjct: 26  DSWFQAGFVLTTGINSAYVLGYSGTIMVPLGWIGGVVGLIAATAISLYANCLIAKLHEFG 85

Query: 79  GKRHIRYRDLAGHIYGRRAYALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTM 138
           GKRHIRYRDLAG IYGR AY+LTWGLQY NLFMIN GYIILAGQALKA +VLF  DDH M
Sbjct: 86  GKRHIRYRDLAGFIYGRTAYSLTWGLQYANLFMINVGYIILAGQALKALYVLF-SDDHVM 144

Query: 139 KLPYFIAIAGFVCALFAIGIPNLSALGVWLGVSTVLSTIYIVIAIWLSVRDGLKNPARDY 198
           KLPYFIAIAG VCALFAI IP+LSAL +WLG STV S +YI++A  LS+RDG+K PA DY
Sbjct: 145 KLPYFIAIAGVVCALFAISIPHLSALKIWLGFSTVFSLVYIIVAFILSLRDGVKTPA-DY 203

Query: 199 SIPGTTATKIFESIGACANLVFAFNTGMLPEIQ--VRE 234
           S+PG++ +KIF +IGA ANLVFAFNTGMLPEIQ  VR+
Sbjct: 204 SLPGSSTSKIFTTIGASANLVFAFNTGMLPEIQATVRQ 241

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225449240|ref|XP_002280217.1| PREDICTED: lysine histidine transporter 2-like [Vitis vinifera]

 Score =  339 bits (870), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 165/213 (77%), Positives = 186/213 (87%), Gaps = 1/213 (0%)

Query: 19  DSWFQVGFVLTTGINSAYVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKLHEFG 78
           DSW QVGFVLTTGINSA+VLGY GT MVPLGW  GV+G ++A  +SL AN+L+AKLHEFG
Sbjct: 63  DSWLQVGFVLTTGINSAFVLGYSGTTMVPLGWAGGVIGFLLAAGISLYANSLVAKLHEFG 122

Query: 79  GKRHIRYRDLAGHIYGRRAYALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTM 138
           GKRHIRYRDLAG+IYG++AY LTW LQYVNLFMINTGY+ILAGQALKA +VLF +DD  M
Sbjct: 123 GKRHIRYRDLAGYIYGKKAYTLTWALQYVNLFMINTGYLILAGQALKAVYVLF-RDDGGM 181

Query: 139 KLPYFIAIAGFVCALFAIGIPNLSALGVWLGVSTVLSTIYIVIAIWLSVRDGLKNPARDY 198
           KLPYFIAI GFVCA+FAIGIP+LSALG+WLG ST LS IYIVIA  LS+ DG+K P+RDY
Sbjct: 182 KLPYFIAIGGFVCAIFAIGIPHLSALGIWLGFSTCLSLIYIVIAFVLSLTDGIKAPSRDY 241

Query: 199 SIPGTTATKIFESIGACANLVFAFNTGMLPEIQ 231
           SIPGT A+K+F  IGA ANLVFAFNTGMLPEIQ
Sbjct: 242 SIPGTEASKVFSIIGAAANLVFAFNTGMLPEIQ 274

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296086111|emb|CBI31552.3| unnamed protein product [Vitis vinifera]

 Score =  338 bits (867), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 165/213 (77%), Positives = 186/213 (87%), Gaps = 1/213 (0%)

Query: 19  DSWFQVGFVLTTGINSAYVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKLHEFG 78
           DSW QVGFVLTTGINSA+VLGY GT MVPLGW  GV+G ++A  +SL AN+L+AKLHEFG
Sbjct: 33  DSWLQVGFVLTTGINSAFVLGYSGTTMVPLGWAGGVIGFLLAAGISLYANSLVAKLHEFG 92

Query: 79  GKRHIRYRDLAGHIYGRRAYALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTM 138
           GKRHIRYRDLAG+IYG++AY LTW LQYVNLFMINTGY+ILAGQALKA +VLF +DD  M
Sbjct: 93  GKRHIRYRDLAGYIYGKKAYTLTWALQYVNLFMINTGYLILAGQALKAVYVLF-RDDGGM 151

Query: 139 KLPYFIAIAGFVCALFAIGIPNLSALGVWLGVSTVLSTIYIVIAIWLSVRDGLKNPARDY 198
           KLPYFIAI GFVCA+FAIGIP+LSALG+WLG ST LS IYIVIA  LS+ DG+K P+RDY
Sbjct: 152 KLPYFIAIGGFVCAIFAIGIPHLSALGIWLGFSTCLSLIYIVIAFVLSLTDGIKAPSRDY 211

Query: 199 SIPGTTATKIFESIGACANLVFAFNTGMLPEIQ 231
           SIPGT A+K+F  IGA ANLVFAFNTGMLPEIQ
Sbjct: 212 SIPGTEASKVFSIIGAAANLVFAFNTGMLPEIQ 244

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	238
TAIR|locus:2061156	442	PROT1 "proline transporter 1"	0.890	0.479	0.798	5.9e-89
TAIR|locus:2078981	439	PROT2 "proline transporter 2"	0.890	0.482	0.765	1.8e-85
TAIR|locus:2044835	436	ProT3 "proline transporter 3"	0.890	0.486	0.760	1e-84
TAIR|locus:2199978	451	AT1G08230 [Arabidopsis thalian	0.882	0.465	0.311	4.6e-18
TAIR|locus:2152995	452	AT5G41800 [Arabidopsis thalian	0.878	0.462	0.331	1.3e-17
UNIPROTKB|Q85V22	441	ht "Histidine amino acid trans	0.865	0.467	0.310	6.3e-14
TAIR|locus:2008605	441	AT1G67640 "AT1G67640" [Arabido	0.869	0.469	0.273	2.8e-13
TAIR|locus:2154815	446	LHT1 "lysine histidine transpo	0.865	0.461	0.285	2.9e-13
TAIR|locus:2024071	441	LHT2 "lysine histidine transpo	0.869	0.469	0.277	6e-13
TAIR|locus:2008154	453	AT1G48640 [Arabidopsis thalian	0.865	0.454	0.285	8.3e-13

TAIR|locus:2061156 PROT1 "proline transporter 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 888 (317.7 bits), Expect = 5.9e-89, P = 5.9e-89
 Identities = 170/213 (79%), Positives = 189/213 (88%)

Query:    19 DSWFQVGFVLTTGINSAYVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKLHEFG 78
             DSWFQV FVLTTGINSAYVLGY GT+MVPLGWI GVVGL+IAT +SL AN LIAKLHEFG
Sbjct:    34 DSWFQVAFVLTTGINSAYVLGYSGTIMVPLGWIGGVVGLLIATAISLYANTLIAKLHEFG 93

Query:    79 GKRHIRYRDLAGHIYGRRAYALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTM 138
             G+RHIRYRDLAG IYGR+AY LTWGLQYVNLFMIN G+IILAG ALKA +VLF +DDHTM
Sbjct:    94 GRRHIRYRDLAGFIYGRKAYHLTWGLQYVNLFMINCGFIILAGSALKAVYVLF-RDDHTM 152

Query:   139 KLPYFIAIAGFVCALFAIGIPNLSALGVWLGVSTVLSTIYIVIAIWLSVRDGLKNPARDY 198
             KLP+FIAIAG +CA+FAIGIP+LSALGVWLGVST LS IYIV+AI LSVRDG+K P+RDY
Sbjct:   153 KLPHFIAIAGLICAIFAIGIPHLSALGVWLGVSTFLSLIYIVVAIVLSVRDGVKTPSRDY 212

Query:   199 SIPGTTATKIFESIGACANLVFAFNTGMLPEIQ 231
              I G++ +K+F   GA ANLVFAFNTGMLPEIQ
Sbjct:   213 EIQGSSLSKLFTITGAAANLVFAFNTGMLPEIQ 245

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006865 "amino acid transport" evidence=ISS

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0015193 "L-proline transmembrane transporter activity" evidence=IGI

GO:0015824 "proline transport" evidence=IGI

TAIR|locus:2078981 PROT2 "proline transporter 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 855 (306.0 bits), Expect = 1.8e-85, P = 1.8e-85
 Identities = 163/213 (76%), Positives = 184/213 (86%)

Query:    19 DSWFQVGFVLTTGINSAYVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKLHEFG 78
             DSWFQV FVLTTGINSAYVLGY GTVMVPLGWI GVVGLI+AT +SL AN LIAKLHEFG
Sbjct:    31 DSWFQVAFVLTTGINSAYVLGYSGTVMVPLGWIGGVVGLILATAISLYANTLIAKLHEFG 90

Query:    79 GKRHIRYRDLAGHIYGRRAYALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTM 138
             GKRHIRYRDLAG IYG++ Y +TWGLQYVNLFMIN G+IILAG ALKA +VLF +DD  M
Sbjct:    91 GKRHIRYRDLAGFIYGKKMYRVTWGLQYVNLFMINCGFIILAGSALKAVYVLF-RDDSLM 149

Query:   139 KLPYFIAIAGFVCALFAIGIPNLSALGVWLGVSTVLSTIYIVIAIWLSVRDGLKNPARDY 198
             KLP+FIAIAG VCA+FAIGIP+LSALG+WLGVST+LS IYI++AI LS +DG+  P RDY
Sbjct:   150 KLPHFIAIAGVVCAIFAIGIPHLSALGIWLGVSTILSIIYIIVAIVLSAKDGVNKPERDY 209

Query:   199 SIPGTTATKIFESIGACANLVFAFNTGMLPEIQ 231
             +I G++  K+F   GA ANLVFAFNTGMLPEIQ
Sbjct:   210 NIQGSSINKLFTITGAAANLVFAFNTGMLPEIQ 242

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006865 "amino acid transport" evidence=ISS;RCA

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0015824 "proline transport" evidence=IGI;RCA

GO:0043090 "amino acid import" evidence=RCA

GO:0015193 "L-proline transmembrane transporter activity" evidence=IGI

TAIR|locus:2044835 ProT3 "proline transporter 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 848 (303.6 bits), Expect = 1.0e-84, P = 1.0e-84
 Identities = 162/213 (76%), Positives = 182/213 (85%)

Query:    19 DSWFQVGFVLTTGINSAYVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKLHEFG 78
             DSWFQ  FVLTT INSAYVLGY GTVMVPLGWI GVVGLI+AT +SL AN L+AKLHEFG
Sbjct:    28 DSWFQAAFVLTTSINSAYVLGYSGTVMVPLGWIGGVVGLILATAISLYANTLVAKLHEFG 87

Query:    79 GKRHIRYRDLAGHIYGRRAYALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTM 138
             GKRHIRYRDLAG IYGR+AY LTW LQYVNLFMIN G+IILAG ALKA +VLF +DDH M
Sbjct:    88 GKRHIRYRDLAGFIYGRKAYCLTWVLQYVNLFMINCGFIILAGSALKAVYVLF-RDDHAM 146

Query:   139 KLPYFIAIAGFVCALFAIGIPNLSALGVWLGVSTVLSTIYIVIAIWLSVRDGLKNPARDY 198
             KLP+FIAIAG +CA+FAIGIP+LSALG+WL VST+LS IYIV+AI LSV+DG+K P+RDY
Sbjct:   147 KLPHFIAIAGLICAVFAIGIPHLSALGIWLAVSTILSLIYIVVAIVLSVKDGVKAPSRDY 206

Query:   199 SIPGTTATKIFESIGACANLVFAFNTGMLPEIQ 231
              I G+  +K+F   GA A LVF FNTGMLPEIQ
Sbjct:   207 EIQGSPLSKLFTITGAAATLVFVFNTGMLPEIQ 239

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006865 "amino acid transport" evidence=ISS

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0015193 "L-proline transmembrane transporter activity" evidence=IGI

GO:0015824 "proline transport" evidence=IGI;RCA

TAIR|locus:2199978 AT1G08230 [Arabidopsis thaliana (taxid:3702)]

 Score = 225 (84.3 bits), Expect = 4.6e-18, P = 4.6e-18
 Identities = 72/231 (31%), Positives = 111/231 (48%)

Query:    13 FHLEMLDSWFQVGFVLTTGINSAYVLGYPGTVMVPLGWIAGV---VGLIIATIVSLNANA 69
             F L+   +W+  GF LTT I +  +L  P      LGW AG+   VG    T  S    +
Sbjct:    24 FVLKSKGTWWHCGFHLTTSIVAPALLSLPYAFKF-LGWAAGISCLVGGAAVTFYSYTLLS 82

Query:    70 LIAKLHEFGGKRHIRYRDLAGHIYGRRAYALTWGLQYVNLFMINTGY-IILA-----GQA 123
             L  + H   G R++R+RD+A HI   +     WG  YV    +   Y +++A     GQ 
Sbjct:    83 LTLEHHASLGNRYLRFRDMAHHILSPK-----WGRYYVGPIQMAVCYGVVIANALLGGQC 137

Query:   124 LKAAFVLFWKDDHTMKLPYFIAIAGFVCALFAIG-IPNLSALGVWLGVSTVLSTIYIVIA 182
             LKA +++  + +  MKL  F+ I G  C L  +   P+  +L     +S +L  +Y   A
Sbjct:   138 LKAMYLVV-QPNGEMKLFEFVIIFG--CLLLVLAQFPSFHSLRYINSLSLLLCLLYSASA 194

Query:   183 IWLSVRDGLK-N-PARDYSIPGTTATKIFESIGACANLVFAFNTGMLPEIQ 231
                S+  G + N P +DY+I G   T++F    A A +   +  G++PEIQ
Sbjct:   195 AAASIYIGKEPNAPEKDYTIVGDPETRVFGIFNAMAIIATTYGNGIIPEIQ 245

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0015185 "gamma-aminobutyric acid transmembrane transporter activity" evidence=IDA

GO:0015812 "gamma-aminobutyric acid transport" evidence=IGI

TAIR|locus:2152995 AT5G41800 [Arabidopsis thaliana (taxid:3702)]

 Score = 221 (82.9 bits), Expect = 1.3e-17, P = 1.3e-17
 Identities = 77/232 (33%), Positives = 115/232 (49%)

Query:    13 FHLEMLDSWFQVGFVLTTGINSAYVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIA 72
             F L+    W+  GF LTT I    +L  P      LGW  G V L    +V+  A  L++
Sbjct:    23 FVLQSKGEWWHAGFHLTTAIVGPTILTLPYAFR-GLGWWLGFVCLTTMGLVTFYAYYLMS 81

Query:    73 KL--H-EFGGKRHIRYRDLAGHIYGRRAYALTWGLQ-YVNLFM---INTGY----IILAG 121
             K+  H E  G+RHIR+R+LA  + G        GL  YV +F+   INTG     I+LAG
Sbjct:    82 KVLDHCEKSGRRHIRFRELAADVLGS-------GLMFYVVIFIQTAINTGIGIGAILLAG 134

Query:   122 QALKAAFVLFWKDDHTMKLPYFIAIAGFVCALFAIGIPNLSALGVWLGVSTVLSTIYIVI 181
             Q L   +   +    T+KL  FIA+   V  + +  +P+  +L      S +LS  Y  +
Sbjct:   135 QCLDIMYSSLFPQG-TLKLYEFIAMVTVVMMVLS-QLPSFHSLRHINCASLLLSLGYTFL 192

Query:   182 AIWLSVRDGL-KN-PARDYSIPGTTATKIFESIGACANLVFAFNTGMLPEIQ 231
              +   +  GL KN P R+YS+  + + K+F +  + + +   F  G+LPEIQ
Sbjct:   193 VVGACINLGLSKNAPKREYSLEHSDSGKVFSAFTSISIIAAIFGNGILPEIQ 244

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006865 "amino acid transport" evidence=ISS

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0015824 "proline transport" evidence=RCA

UNIPROTKB|Q85V22 ht "Histidine amino acid transporter" [Oryza sativa Indica Group (taxid:39946)]

 Score = 187 (70.9 bits), Expect = 6.3e-14, P = 6.3e-14
 Identities = 68/219 (31%), Positives = 105/219 (47%)

Query:    21 WFQVGFVLTTGINSAYVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKLHEF-GG 79
             W+   F   T +  A VL  P   M  LGW  G+  LI++ I++L     + ++HE   G
Sbjct:    31 WWYSAFHNVTAMVGAGVLSLP-YAMSELGWGPGIAVLILSWIITLYTLWQMVEMHEMVPG 89

Query:    80 KRHIRYRDLAGHIYGRR-AYALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDD--H 136
             KR  RY +L  H +G +    +    Q V    +N  Y++  G++LK    +  +     
Sbjct:    90 KRFDRYHELGQHAFGEKLGLWIVVPQQLVVEVGVNIVYMVTGGKSLKKFHDVLCEGHGCK 149

Query:   137 TMKLPYFIAIAGFVCALFAIG-IPNLSAL-GVWLGVSTVLSTIYIVIAIWLSVRDGLKNP 194
              +KL YFI I  F    F +  +PN +++ GV L  + V+S  Y  IA   SV  G K  
Sbjct:   150 NIKLTYFIMI--FASVHFVLSQLPNFNSISGVSLAAA-VMSLSYSTIAWGASVDKG-KVA 205

Query:   195 ARDYSIPGTTAT-KIFESIGACANLVFAF-NTGMLPEIQ 231
               DY +  TT+T K+F    A  ++ FA+    ++ EIQ
Sbjct:   206 DVDYHLRATTSTGKVFGFFSALGDVAFAYAGHNVVLEIQ 244

GO:0009536 "plastid" evidence=IC

TAIR|locus:2008605 AT1G67640 "AT1G67640" [Arabidopsis thaliana (taxid:3702)]

 Score = 181 (68.8 bits), Expect = 2.8e-13, P = 2.8e-13
 Identities = 59/216 (27%), Positives = 103/216 (47%)

Query:    21 WFQVGFVLTTGINSAYVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKLHEF-GG 79
             W+   F   T +  A VL  P   M  LGW  GV  +I++ +++      + ++HE   G
Sbjct:    33 WWYSAFHNVTAMVGAGVLSLP-YAMSNLGWGPGVTIMIMSWLITFYTLWQMVQMHEMVPG 91

Query:    80 KRHIRYRDLAGHIYGRR-AYALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTM 138
             KR  RY +L  H +G +    +    Q +    ++  Y++  G++LK    L   D   +
Sbjct:    92 KRFDRYHELGQHAFGEKLGLWIVVPQQLIVEVGVDIVYMVTGGKSLKKIHDLLCTDCKNI 151

Query:   139 KLPYFIAIAGFVCALFAIG-IPNLSALGVWLGVSTVLSTIYIVIAIWLSVRDGLKNPARD 197
             +  Y+I I  F    F +  +PN +++ +    + V+S  Y  IA   SV+ G+ +P  D
Sbjct:   152 RTTYWIMI--FASIHFVLAHLPNFNSISIVSLAAAVMSLSYSTIAWATSVKKGV-HPNVD 208

Query:   198 YSI-PGTTATKIFESIGACANLVFAF-NTGMLPEIQ 231
             YS    TT+  +F  + A  ++ FA+    ++ EIQ
Sbjct:   209 YSSRASTTSGNVFNFLNALGDVAFAYAGHNVVLEIQ 244

GO:0005275 "amine transmembrane transporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006865 "amino acid transport" evidence=ISS

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

TAIR|locus:2154815 LHT1 "lysine histidine transporter 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 181 (68.8 bits), Expect = 2.9e-13, P = 2.9e-13
 Identities = 62/217 (28%), Positives = 101/217 (46%)

Query:    21 WFQVGFVLTTGINSAYVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKLHEF-GG 79
             W+   F   T +  A VLG P   M  LGW  G+  L+++ +++L     + ++HE   G
Sbjct:    38 WWYSAFHNVTAMVGAGVLGLP-YAMSQLGWGPGIAVLVLSWVITLYTLWQMVEMHEMVPG 96

Query:    80 KRHIRYRDLAGHIYGRR-AYALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTM 138
             KR  RY +L  H +G +    +    Q +    +   Y++  G++LK    L   D   +
Sbjct:    97 KRFDRYHELGQHAFGEKLGLYIVVPQQLIVEIGVCIVYMVTGGKSLKKFHELVCDDCKPI 156

Query:   139 KLPYFIAIAGFVCALFAIG-IPNLSAL-GVWLGVSTVLSTIYIVIAIWLSVRDGLKNPAR 196
             KL YFI I  F    F +  +PN +++ GV L  + V+S  Y  IA   S   G++   +
Sbjct:   157 KLTYFIMI--FASVHFVLSHLPNFNSISGVSLAAA-VMSLSYSTIAWASSASKGVQEDVQ 213

Query:   197 DYSIPG-TTATKIFESIGACANLVFAF-NTGMLPEIQ 231
              Y     TTA  +F       ++ FA+    ++ EIQ
Sbjct:   214 -YGYKAKTTAGTVFNFFSGLGDVAFAYAGHNVVLEIQ 249

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006865 "amino acid transport" evidence=ISS;RCA

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS;IMP

GO:0016020 "membrane" evidence=ISS

GO:0043090 "amino acid import" evidence=RCA;IMP

GO:0080167 "response to karrikin" evidence=IEP

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0006820 "anion transport" evidence=RCA

GO:0006862 "nucleotide transport" evidence=RCA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0015696 "ammonium transport" evidence=RCA

GO:0015802 "basic amino acid transport" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0043269 "regulation of ion transport" evidence=RCA

TAIR|locus:2024071 LHT2 "lysine histidine transporter 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 178 (67.7 bits), Expect = 6.0e-13, P = 6.0e-13
 Identities = 60/216 (27%), Positives = 102/216 (47%)

Query:    21 WFQVGFVLTTGINSAYVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKLHEF-GG 79
             W+   F   T +  A VL  P   M  LGW  GV  ++++ I++L     + ++HE   G
Sbjct:    33 WWYSAFHNVTAMVGAGVLSLP-YAMSNLGWGPGVTIMVMSWIITLYTLWQMVEMHEIVPG 91

Query:    80 KRHIRYRDLAGHIYGRR-AYALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTM 138
             KR  RY +L  H +G +    +    Q +    ++  Y++  G +LK    L   D   +
Sbjct:    92 KRLDRYHELGQHAFGEKLGLWIVVPQQLIVEVGVDIVYMVTGGASLKKVHQLVCPDCKEI 151

Query:   139 KLPYFIAIAGFVCALFAIG-IPNLSALGVWLGVSTVLSTIYIVIAIWLSVRDGLKNPARD 197
             +  ++I I  F    F I  +PN +++ +    + V+S  Y  IA   SV  G+ +P  D
Sbjct:   152 RTTFWIMI--FASVHFVISHLPNFNSISIISLAAAVMSLTYSTIAWAASVHKGV-HPDVD 208

Query:   198 YSIPGTTAT-KIFESIGACANLVFAF-NTGMLPEIQ 231
             YS   +T   K+F  + A  ++ FA+    ++ EIQ
Sbjct:   209 YSPRASTDVGKVFNFLNALGDVAFAYAGHNVVLEIQ 244

GO:0005886 "plasma membrane" evidence=ISM

GO:0006865 "amino acid transport" evidence=ISS

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0015172 "acidic amino acid transmembrane transporter activity" evidence=IGI

GO:0015175 "neutral amino acid transmembrane transporter activity" evidence=IGI

TAIR|locus:2008154 AT1G48640 [Arabidopsis thaliana (taxid:3702)]

 Score = 177 (67.4 bits), Expect = 8.3e-13, P = 8.3e-13
 Identities = 62/217 (28%), Positives = 103/217 (47%)

Query:    21 WFQVGFVLTTGINSAYVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKLHEF-GG 79
             W+   F   T +  A VLG P   M  LGW  G+  LI++ I++L     + ++HE   G
Sbjct:    45 WWYSTFHNVTAMVGAGVLGLP-FFMAQLGWGPGIAVLILSWIITLYTLWQMVEMHEMVPG 103

Query:    80 KRHIRYRDLAGHIYGRRA--YALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHT 137
             KR  RY +L    +G R   Y +    Q +    +   Y++  GQ+LK    +  +D   
Sbjct:   104 KRFDRYHELGQFAFGERLGLYIIV-PQQIIVEVGVCIVYMVTGGQSLKKFHEIACQDCSP 162

Query:   138 MKLPYFIAIAGFVCALFAIG-IPNLSAL-GVWLGVSTVLSTIYIVIAIWLSVRDGLKNPA 195
             ++L +FI I  F  + F +  +PN +++ GV L V+ V+S  Y  IA   +   G++   
Sbjct:   163 IRLSFFIMI--FASSHFVLSHLPNFNSISGVSL-VAAVMSLSYSTIAWTATAAKGVQEDV 219

Query:   196 RDYSIPGTTATKIFESIGACANLVFAF-NTGMLPEIQ 231
             +     GTTA+ +         + FA+    ++ EIQ
Sbjct:   220 QYGYKSGTTASTVLSFFTGLGGIAFAYAGHNVVLEIQ 256

GO:0005886 "plasma membrane" evidence=ISM

GO:0006865 "amino acid transport" evidence=ISS

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P92961	PROT1_ARATH	No assigned EC number	0.7889	0.9033	0.4864	yes	no
Q69LA1	PROT2_ORYSJ	No assigned EC number	0.7323	0.8907	0.4884	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	PtrProT2	proline transporter (445 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	CIPK21	SubName- Full=CBL-interacting protein kinase 21; (431 aa)							•		0.505
	CPK6	calcium dependent protein kinase 6 (560 aa)							•		0.502

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	238
pfam01490	406	pfam01490, Aa_trans, Transmembrane amino acid tran	1e-35

>gnl|CDD|216528 pfam01490, Aa_trans, Transmembrane amino acid transporter protein

 Score =  130 bits (328), Expect = 1e-35
 Identities = 70/218 (32%), Positives = 99/218 (45%), Gaps = 11/218 (5%)

Query: 20  SWFQVGFVLTTGINSAYVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKLHEF-- 77
           S +Q  F L   I  A VL  P      LGWI G++ L+I  ++SL    L+ +  ++  
Sbjct: 4   SAWQAVFNLIKAIIGAGVLSLPYA-FKQLGWIPGLILLVIVGLISLYTLHLLVQCSKYVD 62

Query: 78  --GGKRHIRYRDLAGHIYGRRAYALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDD 135
              GKR   Y DL   ++G +   L      VNLF +   Y+I AG  L A F   + D 
Sbjct: 63  KVKGKRRKSYGDLGYRLFGPKGKLLILFAILVNLFGVCISYLIFAGDNLPAIFD-SFFDT 121

Query: 136 HTMKLPYFIAIAGFVCALFAIGIPNLSALGVWLGVSTVLSTIYIVIAIWLSVRDGLKNPA 195
             + L YFI I G +    +  IPNLSAL +   V+ V S    ++ + LSV +     A
Sbjct: 122 CHISLVYFIIIFGLIFIPLSF-IPNLSALSILSLVAAVSSL--YIVILVLSVAELGVLTA 178

Query: 196 RDYSIPG-TTATKIFESIGACANLVFAFN-TGMLPEIQ 231
           +     G  T  K+     A   +VFAF    +L  IQ
Sbjct: 179 QGVGSLGAKTNIKLARLFLAIGIIVFAFEGHAVLLPIQ 216

This transmembrane region is found in many amino acid transporters including UNC-47 and MTR. UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT). UNC-47 is predicted to have 10 transmembrane domains. MTR is a N system amino acid transporter system protein involved in methyltryptophan resistance. Other members of this family include proline transporters and amino acid permeases. Length = 406

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	238
KOG1303	437	consensus Amino acid transporters [Amino acid tran	100.0
PTZ00206	467	amino acid transporter; Provisional	100.0
KOG1304	449	consensus Amino acid transporters [Amino acid tran	100.0
PF01490	409	Aa_trans: Transmembrane amino acid transporter pro	99.98
PLN03074	473	auxin influx permease; Provisional	99.98
KOG4303	524	consensus Vesicular inhibitory amino acid transpor	99.96
KOG1305	411	consensus Amino acid transporter protein [Amino ac	99.93
COG0814	415	SdaC Amino acid permeases [Amino acid transport an	99.93
PRK10483	414	tryptophan permease; Provisional	99.71
PRK09664	415	tryptophan permease TnaB; Provisional	99.7
PF03222	394	Trp_Tyr_perm: Tryptophan/tyrosine permease family;	99.67
PRK15132	403	tyrosine transporter TyrP; Provisional	99.65
TIGR00837	381	araaP aromatic amino acid transport protein. aroma	99.61
PRK13629	443	threonine/serine transporter TdcC; Provisional	99.53
TIGR00814	397	stp serine transporter. The HAAAP family includes	99.36
PRK10655	438	potE putrescine transporter; Provisional	98.81
TIGR01773	452	GABAperm gamma-aminobutyrate permease. GabP is hig	98.72
PRK10435	435	cadB lysine/cadaverine antiporter; Provisional	98.72
TIGR00905	473	2A0302 transporter, basic amino acid/polyamine ant	98.69
PRK10644	445	arginine:agmatin antiporter; Provisional	98.63
PRK10238	456	aromatic amino acid transporter; Provisional	98.63
PRK11049	469	D-alanine/D-serine/glycine permease; Provisional	98.6
TIGR00912	359	2A0309 spore germination protein (amino acid perme	98.58
TIGR00909	429	2A0306 amino acid transporter.	98.56
PRK10580	457	proY putative proline-specific permease; Provision	98.55
PRK11387	471	S-methylmethionine transporter; Provisional	98.52
PRK11021	410	putative transporter; Provisional	98.5
PRK10746	461	putative transport protein YifK; Provisional	98.5
TIGR03810	468	arg_ornith_anti arginine/ornithine antiporter. Mem	98.5
PRK10249	458	phenylalanine transporter; Provisional	98.48
TIGR00908	442	2A0305 ethanolamine permease. The three genes used	98.41
KOG3832	319	consensus Predicted amino acid transporter [Genera	98.38
TIGR00906	557	2A0303 cationic amino acid transport permease.	98.37
TIGR00913	478	2A0310 amino acid permease (yeast).	98.36
TIGR00911	501	2A0308 L-type amino acid transporter.	98.34
PRK15049	499	L-asparagine permease; Provisional	98.33
PRK11357	445	frlA putative fructoselysine transporter; Provisio	98.31
PRK10836	489	lysine transporter; Provisional	98.3
COG1113	462	AnsP Gamma-aminobutyrate permease and related perm	98.27
PF13520	426	AA_permease_2: Amino acid permease; PDB: 3NCY_A 3G	98.24
PF03845	320	Spore_permease: Spore germination protein; InterPr	98.19
TIGR00800	442	ncs1 NCS1 nucleoside transporter family. The NCS1	98.18
TIGR00930	953	2a30 K-Cl cotransporter.	98.14
COG0531	466	PotE Amino acid transporters [Amino acid transport	98.13
TIGR03428	475	ureacarb_perm permease, urea carboxylase system. A	98.08
PRK10197	446	gamma-aminobutyrate transporter; Provisional	98.04
KOG1287	479	consensus Amino acid transporters [Amino acid tran	97.7
TIGR00907	482	2A0304 amino acid permease (GABA permease).	97.44
PRK11017	404	codB cytosine permease; Provisional	97.2
TIGR02358	386	thia_cytX probable hydroxymethylpyrimidine transpo	97.2
PF02554	376	CstA: Carbon starvation protein CstA; InterPro: IP	97.15
COG0833	541	LysP Amino acid transporters [Amino acid transport	97.11
PRK15238	496	inner membrane transporter YjeM; Provisional	97.07
PRK11375	484	allantoin permease; Provisional	97.04
COG3949	349	Uncharacterized membrane protein [Function unknown	97.03
PF02133	440	Transp_cyt_pur: Permease for cytosine/purines, ura	97.02
COG1457	442	CodB Purine-cytosine permease and related proteins	96.96
TIGR00835	425	agcS amino acid carrier protein. Members of the AG	96.69
PF00324	478	AA_permease: Amino acid permease; InterPro: IPR004	96.65
TIGR02119	471	panF sodium/pantothenate symporter. Pantothenate (	96.28
TIGR00910	507	2A0307_GadC glutamate:gamma-aminobutyrate antiport	96.27
PF00474	406	SSF: Sodium:solute symporter family; InterPro: IPR	96.03
KOG1286	554	consensus Amino acid transporters [Amino acid tran	95.95
TIGR00813	407	sss transporter, SSS family. have different number	95.88
PRK15015	701	carbon starvation protein A; Provisional	95.86
COG1966	575	CstA Carbon starvation protein, predicted membrane	95.27
TIGR00796	378	livcs branched-chain amino acid uptake carrier. tr	95.26
PRK09395	551	actP acetate permease; Provisional	94.99
PRK12488	549	acetate permease; Provisional	94.55
PRK09442	483	panF sodium/panthothenate symporter; Provisional	94.17
COG0591	493	PutP Na+/proline symporter [Amino acid transport a	92.08
TIGR02711	549	symport_actP cation/acetate symporter ActP. Member	91.16
TIGR03813	474	put_Glu_GABA_T putative glutamate/gamma-aminobutyr	90.87
TIGR02121	487	Na_Pro_sym sodium/proline symporter. This family c	90.45
TIGR03648	552	Na_symport_lg probable sodium:solute symporter, VC	89.44
PF05525	427	Branch_AA_trans: Branched-chain amino acid transpo	88.92
PRK15419	502	proline:sodium symporter PutP; Provisional	83.88

>KOG1303 consensus Amino acid transporters [Amino acid transport and metabolism]

Probab=100.00  E-value=2.3e-43  Score=319.22  Aligned_cols=224  Identities=33%  Similarity=0.487  Sum_probs=194.4

Q ss_pred             CCccccccchhHHHHHHHHhhhhhhhhhhhhHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhccc----cCCcccCcHH
Q 026491           11 YFFHLEMLDSWFQVGFVLTTGINSAYVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKLHE----FGGKRHIRYR   86 (238)
Q Consensus        11 ~~~~~~~~~s~~~a~~~l~~~~iG~GiLalP~a~~~~~G~~~G~i~l~~~~~~~~yt~~lL~~~~~----~~~~~~~sY~   86 (238)
                      ++.+++|++||++|++|.++..+|.|+|+||+| ++++||++|+++++..+++++||..+|.+|++    ..+||+++|+
T Consensus        30 ~~~~~~~~~s~~~a~~~~i~~~~G~gvLsLP~A-~~~lGW~~G~~~Ll~~~iit~YT~~LL~~~~~~~~~~~~~r~~~Y~  108 (437)
T KOG1303|consen   30 DPITPSRGGSWWQAAFHIINALIGAGVLSLPYA-LAQLGWISGIVILLLFAIITLYTATLLSRCWEMHEAVPGKRRYRYP  108 (437)
T ss_pred             CccccCCCCcceehhhheehhhhhhhhhhhHHH-HHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccCCChH
Confidence            344458889999999999999999999999999 99999999999999999999999999999954    4567889999


Q ss_pred             HHHHHHcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhcCCChhhHHH
Q 026491           87 DLAGHIYGRRAYALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTMKLPYFIAIAGFVCALFAIGIPNLSALGV  166 (238)
Q Consensus        87 ~l~~~~~G~~~~~~v~~~~~i~~~g~~v~yli~~~~~l~~~~~~~~~~~~~~~~~~~iii~~~~~~lpl~~l~~l~~l~~  166 (238)
                      |+++++||+++++++...|.++++|+|++|+++.||+++.+++.+..++...+.+.|++++++++ +|++++||++.+++
T Consensus       109 dl~~~afG~~~~~iv~~~~~~~~fg~~v~y~il~~~~L~~~~~~~~~~~~~l~~~~f~iif~~i~-~~~s~lp~~~~l~~  187 (437)
T KOG1303|consen  109 DLGQAAFGPKGRLLVSVLQYLELFGICVVYIILAGDNLKALFPIVSLNDNSLDKQYFIIIFGLIV-LPLSQLPNFHSLSY  187 (437)
T ss_pred             HHHHHHhCCCceEeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccceehhhhHHHHH-HHHHHCCCcchhHH
Confidence            99999999999999999999999999999999999999999998764432556789999999998 89999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcCCCCCCcchhhhhhHhHHHHHHHHhc-cCchhhhhhcccCCC
Q 026491          167 WLGVSTVLSTIYIVIAIWLSVRDGLKNPARDYSIPGTTATKIFESIGACANLVFAFN-TGMLPEIQVREEFRS  238 (238)
Q Consensus       167 ~S~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~a~gi~~Fafg-~~v~p~I~~~M~~~~  238 (238)
                      +|..+++.++.|..+.++.++.++.+...++.+.........  .|+++|+++|||+ |+++||||++||+|+
T Consensus       188 ~S~~~avmS~~~a~~~~~~g~~~g~~~~~~~~~~~~~~~~~~--~f~a~g~iaFaf~gH~v~peIq~tMk~p~  258 (437)
T KOG1303|consen  188 LSLVGAVMSTLYAVILIVLGIADGVGFCAPSGGYLDLGTIPT--VFTALGIIAFAYGGHAVLPEIQHTMKSPP  258 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhccccccCCcccCcccCCCCcc--hhhhhhheeeeecCCeeeeehHhhcCCch
Confidence            999999999999999999999888654222222211111111  1899999999997 999999999999985

>PTZ00206 amino acid transporter; Provisional

Probab=100.00  E-value=2.2e-35  Score=271.74  Aligned_cols=217  Identities=14%  Similarity=0.099  Sum_probs=166.8

Q ss_pred             cchhHHHHHHHHhhhhhhhhhhhhHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhccccCCcccCcHHHHHHHHcCccc
Q 026491           18 LDSWFQVGFVLTTGINSAYVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKLHEFGGKRHIRYRDLAGHIYGRRA   97 (238)
Q Consensus        18 ~~s~~~a~~~l~~~~iG~GiLalP~a~~~~~G~~~G~i~l~~~~~~~~yt~~lL~~~~~~~~~~~~sY~~l~~~~~G~~~   97 (238)
                      +++..+++||++|+++|+|+|++|+| ++++||+.|++++++++.++.||+++|.++.++.+  .++|+|+++++|||++
T Consensus        59 ~gg~~~s~fnL~~~~iGaGILsLP~A-f~~~G~v~giillil~a~ls~ys~~lL~~~~~~~~--~~sY~~la~~~~G~~g  135 (467)
T PTZ00206         59 PGGIAASAFNIASSTVGAGIVGLPSA-ANSSGLVMAMIYLIIITAMTIFSIYALGVAADKTN--IRTYEGVARVLLGPWG  135 (467)
T ss_pred             CCcHHHHHHHHHHHHHhHHHHHHHHH-HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCC--CCCHHHHHHHHhCHHH
Confidence            45678999999999999999999999 99999999999999999999999999999976543  4599999999999999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---C-CCCchhhHHHHHHHHHHHHhcCCChhhHHHHHHHHHH
Q 026491           98 YALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDD---H-TMKLPYFIAIAGFVCALFAIGIPNLSALGVWLGVSTV  173 (238)
Q Consensus        98 ~~~v~~~~~i~~~g~~v~yli~~~~~l~~~~~~~~~~~---~-~~~~~~~iii~~~~~~lpl~~l~~l~~l~~~S~~~~~  173 (238)
                      ++++++.+.+.++|+|++|+++.||+++++++....++   . ..++..+.+++.+++ +|++++|++++|+|+|.++++
T Consensus       136 ~~~v~~~~~~~~~G~cv~YlIiigd~l~~~l~~~~~~~~~~~~~~~r~~~~~i~~~i~-lPLs~~r~i~~L~~~S~i~~~  214 (467)
T PTZ00206        136 SYYVAATRAFHGFSACVAYVISVGDILSATLKGTNAPDFLKQKSGNRLLTSLMWLCFM-LPLVIPRHIDSLRYVSTIAVS  214 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhccCcEEeeeehhhhHh-hhcccccchHHHHHHHHHHHH
Confidence            99999999999999999999999999999886432111   0 112233444555555 899999999999999999986


Q ss_pred             HHHHHHHHHHHHHhhcCCCC--CCCcCCCCCCc---chh-hhhhHhHHHHHHHHhc-cCchhhhhhcccCCC
Q 026491          174 LSTIYIVIAIWLSVRDGLKN--PARDYSIPGTT---ATK-IFESIGACANLVFAFN-TGMLPEIQVREEFRS  238 (238)
Q Consensus       174 ~~~~~~~i~~~~~i~~~~~~--~~~~~~~~~~~---~~~-~~~~~~a~gi~~Fafg-~~v~p~I~~~M~~~~  238 (238)
                      +.+...+.+++.++.++.+.  ++.+....+.+   ..+ ..+++.++|+++|||. |.++||+++|||||+
T Consensus       215 ~i~~~vi~ivi~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~algi~~faF~~h~~~~~i~~~M~~~t  286 (467)
T PTZ00206        215 FMVYLVIVIVVHSCMNGLPENIKNVSVGKDDNAEIILFNSGNRAIEGLGVFIFAYVFQITAYEVYMDMTNRS  286 (467)
T ss_pred             HHHHHHhhhhhhhhcccCcccccccccCCCCCCceEEecCchHHHhhhhHHHhhhhhhhhhHHHHHhhcccc
Confidence            54433333333444444321  11111111111   111 1357889999999996 999999999999975

>KOG1304 consensus Amino acid transporters [Amino acid transport and metabolism]

Probab=100.00  E-value=5.6e-33  Score=249.07  Aligned_cols=211  Identities=17%  Similarity=0.129  Sum_probs=174.6

Q ss_pred             cchhHHHHHHHHhhhhhhhhhhhhHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhccc----cCCcccCcHHHHHHHH-
Q 026491           18 LDSWFQVGFVLTTGINSAYVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKLHE----FGGKRHIRYRDLAGHI-   92 (238)
Q Consensus        18 ~~s~~~a~~~l~~~~iG~GiLalP~a~~~~~G~~~G~i~l~~~~~~~~yt~~lL~~~~~----~~~~~~~sY~~l~~~~-   92 (238)
                      ..|..++..|+.|+++|+|+|++|+| |+++||+.|.+..++.+.+++||+++|++|..    +.++...+|+|.++.+ 
T Consensus        46 ~~s~~~tl~hl~k~~iGtG~l~lP~A-Fk~sG~~~G~~~~~~i~~l~~yc~~~LVk~~~~L~~~~~~~~~~y~~~~~~a~  124 (449)
T KOG1304|consen   46 PTSATQTLIHLLKGSIGTGILSLPLA-FKNSGLVMGLLLTVFIGFLCTYCMHLLVKCSHKLCKRFRGPSLDYAETAESAM  124 (449)
T ss_pred             CCchHHHHHHHHHhhhccccccChHH-HHhcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCccccHHHHHHHHH
Confidence            35899999999999999999999999 99999999999999999999999999999933    2223346788887665 


Q ss_pred             ---------cCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhcCCChhh
Q 026491           93 ---------YGRRAYALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTMKLPYFIAIAGFVCALFAIGIPNLSA  163 (238)
Q Consensus        93 ---------~G~~~~~~v~~~~~i~~~g~~v~yli~~~~~l~~~~~~~~~~~~~~~~~~~iii~~~~~~lpl~~l~~l~~  163 (238)
                               +||++|.+++.+++++|+|.|++|+++.++|++++.+...  ...++.+.|+++...++ +|++++||+|.
T Consensus       125 ~~~~~~~r~~g~~~r~~V~~~L~i~QlGfc~vY~VFva~nl~~i~~~~~--~~~~s~~~~i~~~~~~~-lll~~Ir~Lk~  201 (449)
T KOG1304|consen  125 EGGPGWLRKYGPAARFVVNFFLVITQLGFCCVYLVFVATNLKQIVDEHS--PGVLSVRLYILIQLPPL-LLLNLIRNLKI  201 (449)
T ss_pred             cCCcHHHHhhcHHHHHHHHHHHHHHHhchhhEEeeeHHhhHHHHHhccC--CCCccHHHHHHHHHHHH-HHHHHHHhhHH
Confidence                     5677899999999999999999999999999999998332  24678899999998888 79999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcCCCCCCcchhhhhhHhHHHHHHHHh-ccCchhhhhhcccCCC
Q 026491          164 LGVWLGVSTVLSTIYIVIAIWLSVRDGLKNPARDYSIPGTTATKIFESIGACANLVFAF-NTGMLPEIQVREEFRS  238 (238)
Q Consensus       164 l~~~S~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~a~gi~~Faf-g~~v~p~I~~~M~~~~  238 (238)
                      |+++|++|++..+....++..+.+.+..+   . .+.+  ...++.+.+.++|+.+||| |.+++.|+|++||+|.
T Consensus       202 Lsp~Sl~Anv~~~~g~~ii~~y~~~~~~~---~-~~~~--~~~~~~~~~lf~GtaifafEGig~VLPlEn~Mk~P~  271 (449)
T KOG1304|consen  202 LSPFSLFANVFILVGLAIIMYYLVQDLPP---T-SDLP--AVTGWSGLPLFFGTAIFAFEGIGMVLPLENSMKKPQ  271 (449)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhccCC---c-cccc--cccchhhhHHHHHHHHHHhccceEEEehhhcccChh
Confidence            99999999988777666655444443221   1 1111  1223456788999999999 7999999999999983

>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR)

Probab=99.98  E-value=1.3e-34  Score=261.49  Aligned_cols=218  Identities=22%  Similarity=0.294  Sum_probs=177.0

Q ss_pred             ccchhHHHHHHHHhhhhhhhhhhhhHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhccccC--CcccCcHHHHHHHHcC
Q 026491           17 MLDSWFQVGFVLTTGINSAYVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKLHEFG--GKRHIRYRDLAGHIYG   94 (238)
Q Consensus        17 ~~~s~~~a~~~l~~~~iG~GiLalP~a~~~~~G~~~G~i~l~~~~~~~~yt~~lL~~~~~~~--~~~~~sY~~l~~~~~G   94 (238)
                      +|+|++++.+|++|+++|+|+|++|++ ++++||+.|++++++++.++.||.++|.++++..  +++..+|+|++++.+|
T Consensus         1 ~~~s~~~~~~~l~~~~iG~G~L~lP~a-f~~~G~~~g~i~l~~~~~~s~~t~~~l~~~~~~~~~~~~~~~y~~l~~~~~G   79 (409)
T PF01490_consen    1 HKGSWFSAFFNLINSIIGAGILSLPYA-FAQSGWVLGIILLVLVALLSYYTMYLLVRAANAMPNGTGRRSYGDLARRAFG   79 (409)
T ss_pred             CCccHHHHHHHHHHHHHhHHHHHHHHH-HHHhhhhhhhHHHHHHHHHHHHhhhhhhcccccccccccccccccccccccc
Confidence            689999999999999999999999999 9999999999999999999999999999997642  3456799999999999


Q ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhcCCChhhHHHHHHHHHHH
Q 026491           95 RRAYALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTMKLPYFIAIAGFVCALFAIGIPNLSALGVWLGVSTVL  174 (238)
Q Consensus        95 ~~~~~~v~~~~~i~~~g~~v~yli~~~~~l~~~~~~~~~~~~~~~~~~~iii~~~~~~lpl~~l~~l~~l~~~S~~~~~~  174 (238)
                      |++++++++++.+.++|.|++|+++.+|+++++.+.... +...++..|+++..+++ +|++++|++++++++|.++.++
T Consensus        80 ~~~~~~~~~~~~~~~~g~~v~y~i~~~~~l~~~~~~~~~-~~~~~~~~~~~i~~~i~-~pls~~~~l~~l~~~s~~~~~~  157 (409)
T PF01490_consen   80 PKGKWFVDICIFIYLFGSCVAYLIIIGDSLSSLIPSFFG-DLFISRYVWIIIFALIV-LPLSFLKNLKSLRYLSILGLFS  157 (409)
T ss_pred             ccccccccchheeccccccceeEEEeeeeeecccccccc-ccccccccccccccccc-ccccccchhhHHHHHhhhhhhc
Confidence            999999999999999999999999999999999876542 13456777888877777 8999999999999999999876


Q ss_pred             HHHHHHHHHHHHhhcCCCCCCCcCCCC-CCcchhhhhhHhHHHHHHHHhc-cCchhhhhhcccCCC
Q 026491          175 STIYIVIAIWLSVRDGLKNPARDYSIP-GTTATKIFESIGACANLVFAFN-TGMLPEIQVREEFRS  238 (238)
Q Consensus       175 ~~~~~~i~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~a~gi~~Fafg-~~v~p~I~~~M~~~~  238 (238)
                      .+.++++.+......... ++.+...+ .++..+.++.+.++|+++|||+ |..+||+++|||+|+
T Consensus       158 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~faf~~~~~~~~i~~~m~~~~  222 (409)
T PF01490_consen  158 IFYFIVIVVIYIISYGPG-EPSGVPSPPVWPFISFSGFFSAFGIIIFAFSCHPNLPPIQSEMKDPS  222 (409)
T ss_pred             cceeeeeecceeeeeecc-cccccccccccccchhhHHHHhhhhhhhhhhcccccceeeeeccCCc
Confidence            543322222222222211 11111111 1223446789999999999996 999999999999985

UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT) and is is predicted to have 10 transmembrane domains UNC47_CAEEL []. MTR is an N system amino acid transporter system protein involved in methyltryptophan resistance MTR_NEUCR. Other members of this family include proline transporters and amino acid transporters whose specificity has not yet been identified.

>PLN03074 auxin influx permease; Provisional

Probab=99.98  E-value=1.5e-31  Score=246.12  Aligned_cols=207  Identities=14%  Similarity=0.164  Sum_probs=167.1

Q ss_pred             cchhHHHHHHHHhhhhhhhhhhhhHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcccc----CCc-----cc--CcHH
Q 026491           18 LDSWFQVGFVLTTGINSAYVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKLHEF----GGK-----RH--IRYR   86 (238)
Q Consensus        18 ~~s~~~a~~~l~~~~iG~GiLalP~a~~~~~G~~~G~i~l~~~~~~~~yt~~lL~~~~~~----~~~-----~~--~sY~   86 (238)
                      ++++.++.+|++|..+|+|+|+||+| ++++||++|++.+++.++++.||+++|.+++.+    .++     ++  .+|.
T Consensus        45 ~~s~~~~~~~l~~~~vG~GILaLP~A-f~~~G~v~Gii~lv~~~~l~~Yt~~lL~~~~~~~~~r~~~~~~~~~~~~~~~~  123 (473)
T PLN03074         45 GGSVYDAWFSCASNQVAQVLLTLPYS-FSQLGMLSGILFQIFYGLLGSWTAYLISVLYVEYRARKEREKVDFKNHVIQWF  123 (473)
T ss_pred             CchHHHHHHHHHHHHHhHHHHhHHHH-HHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcCCCchhHHHHHHH
Confidence            45889999999999999999999999 999999999999999999999999999987321    111     11  3689


Q ss_pred             HHHHHHcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhcCCChhhHHH
Q 026491           87 DLAGHIYGRRAYALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTMKLPYFIAIAGFVCALFAIGIPNLSALGV  166 (238)
Q Consensus        87 ~l~~~~~G~~~~~~v~~~~~i~~~g~~v~yli~~~~~l~~~~~~~~~~~~~~~~~~~iii~~~~~~lpl~~l~~l~~l~~  166 (238)
                      |+++..+||+++.+...+.++.+++.|+.|++..++++..+.       ..++.+.|++++++++ +|++++|++|++++
T Consensus       124 e~~~~~~G~~~~~~~~~~~~v~l~~~~v~~li~~~~~~~~l~-------~~~~~~~~~~i~~~v~-~~~~~i~sl~~l~~  195 (473)
T PLN03074        124 EVLDGLLGPYWKNVGLAFNCTFLLFGSVIQLIACASNIYYIN-------DNLDKRTWTYIFGACC-ATTVFIPSFHNYRI  195 (473)
T ss_pred             HHHHHhcChhHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhC-------CCcCCCeEEeehHHHH-HHHHHccCHHHHHH
Confidence            999999999999999999999999999999999998887651       2456688898988888 79999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcCCCCCCcchhhhhhHhHHHHHHHHhc-cCchhhhhhcccCCC
Q 026491          167 WLGVSTVLSTIYIVIAIWLSVRDGLKNPARDYSIPGTTATKIFESIGACANLVFAFN-TGMLPEIQVREEFRS  238 (238)
Q Consensus       167 ~S~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~a~gi~~Fafg-~~v~p~I~~~M~~~~  238 (238)
                      +|.+++.+++.+.+.++..++.++.. |+.+++    ...++..+++++++++|||+ |+++||||++||||+
T Consensus       196 ~S~ig~~~tl~~av~i~i~~i~~~~~-~~~~~~----~~~~~~~~f~~~~~i~faf~g~~v~~~I~~~M~~P~  263 (473)
T PLN03074        196 WSFLGLLMTTYTAWYMTIAALSHGQV-EGVKHS----GPTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQ  263 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcCC-CCCCCC----CchhHHHHHHHHHHHHHHhcccccHHHHHHhccChh
Confidence            99999876655443333334444322 222211    12245567888999999995 999999999999995

>KOG4303 consensus Vesicular inhibitory amino acid transporter [Amino acid transport and metabolism; Signal transduction mechanisms]

Probab=99.96  E-value=3.8e-31  Score=227.27  Aligned_cols=212  Identities=16%  Similarity=0.170  Sum_probs=181.2

Q ss_pred             ccccccchhHHHHHHHHhhhhhhhhhhhhHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhccccCC---c---ccCcHH
Q 026491           13 FHLEMLDSWFQVGFVLTTGINSAYVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKLHEFGG---K---RHIRYR   86 (238)
Q Consensus        13 ~~~~~~~s~~~a~~~l~~~~iG~GiLalP~a~~~~~G~~~G~i~l~~~~~~~~yt~~lL~~~~~~~~---~---~~~sY~   86 (238)
                      |+.+.|-+.|||++|++|++.|.-+++||+| ..+.|| +++..++..|.+++||+++|++|.-+++   +   .+++|.
T Consensus       111 Ge~~~kI~a~qAaWNVTNAIQGMFivgLP~A-vlhGGy-w~i~amvg~A~vCcyTGk~Li~CLYE~~~dGevVrvRdsYv  188 (524)
T KOG4303|consen  111 GEASEKISALQAAWNVTNAIQGMFIVGLPIA-VLHGGY-WSIGAMVGVAYVCCYTGKLLIECLYENGEDGEVVRVRDSYV  188 (524)
T ss_pred             CCCCCccHHHHHhhhhhhhhheeeEecccee-eeEcch-hHHHHHHhhhhhhhccchhhhhhhccCCCCCcEEEeehhHH
Confidence            4556677999999999999999999999999 999999 7999999999999999999999943222   1   247999


Q ss_pred             HHHHHHcCccc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhcCCChhhHH
Q 026491           87 DLAGHIYGRRA-YALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTMKLPYFIAIAGFVCALFAIGIPNLSALG  165 (238)
Q Consensus        87 ~l~~~~~G~~~-~~~v~~~~~i~~~g~~v~yli~~~~~l~~~~~~~~~~~~~~~~~~~iii~~~~~~lpl~~l~~l~~l~  165 (238)
                      ++++.+++|.. ...+.+.|+++++.+|+.|++..||.++.-|+     +...+.+.|+++..+.+ +|+++++++|-.+
T Consensus       189 aIA~~C~~P~lGgr~V~~AQliELlmTCIlYvVv~gdLl~~~fP-----~~svd~~sWm~i~~a~L-Lpc~FLk~Lk~VS  262 (524)
T KOG4303|consen  189 AIADFCYKPGLGGRWVLAAQLIELLMTCILYVVVAGDLLQSCFP-----GLSVDKASWMMITSASL-LPCSFLKDLKIVS  262 (524)
T ss_pred             HHHHHhcCCCcchheeeHHHHHHHHHHHHhhhheechhhhccCC-----CCCccccchhhhhhHHH-hhhHHHHHHHHHH
Confidence            99999999974 47789999999999999999999999987763     45677889999999998 8999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcCCCC--CCCcCCCCCCcchhhhhhHhHHHHHHHHhc-cCchhhhhhcccCCC
Q 026491          166 VWLGVSTVLSTIYIVIAIWLSVRDGLKN--PARDYSIPGTTATKIFESIGACANLVFAFN-TGMLPEIQVREEFRS  238 (238)
Q Consensus       166 ~~S~~~~~~~~~~~~i~~~~~i~~~~~~--~~~~~~~~~~~~~~~~~~~~a~gi~~Fafg-~~v~p~I~~~M~~~~  238 (238)
                      .+|+++.++.++...+++.+++....++  .+++.++      +..+++..+|+++|+|+ |..+|++|.+|++||
T Consensus       263 ~lSf~ct~sH~viN~i~v~YCLs~~~dW~wskv~Fsi------di~~fPisvG~iVFsYTSqIFLP~LEGNM~~ps  332 (524)
T KOG4303|consen  263 RLSFFCTISHLVINLIMVLYCLSFVSDWSWSKVTFSI------DINTFPISVGMIVFSYTSQIFLPNLEGNMKNPS  332 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhccceeEEEEE------EcccCceEEEEEEEeeeceeeccccccccCChh
Confidence            9999999999999888888887665432  1222221      23456788999999997 999999999999997

>KOG1305 consensus Amino acid transporter protein [Amino acid transport and metabolism]

Probab=99.93  E-value=4.3e-26  Score=205.69  Aligned_cols=217  Identities=18%  Similarity=0.209  Sum_probs=164.6

Q ss_pred             ccccchhHHHHHHHHhhhhhhhhhhhhHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhccccCCcccCcHHHHHHHHcC
Q 026491           15 LEMLDSWFQVGFVLTTGINSAYVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKLHEFGGKRHIRYRDLAGHIYG   94 (238)
Q Consensus        15 ~~~~~s~~~a~~~l~~~~iG~GiLalP~a~~~~~G~~~G~i~l~~~~~~~~yt~~lL~~~~~~~~~~~~sY~~l~~~~~G   94 (238)
                      .+++.|.+.+++|+.|+++|+|+|++|+| |++.|.+.|+++++.+|.++.++.+++.++.++.++|  +|+++++.++|
T Consensus         2 ~~~~~s~~~~v~nl~~ti~GaGIl~~P~a-fk~~Giv~gi~li~~~a~~s~~sl~~l~~~a~~~~~~--ty~~l~~~~~g   78 (411)
T KOG1305|consen    2 MSGKTSFRSAVFNLVNTIMGAGILAMPYA-FKTAGLLLGILLIVLSAFLSLLSLYLLSKCAKKSGER--TYSSLGDLIFG   78 (411)
T ss_pred             CCCccchhhhHHHHHhhhhccHHHHhHHH-HHHhcHHHHHHHHHHHHHHHHhHHHHHHHhhhhcCCC--CHHHHHHHHcC
Confidence            45677999999999999999999999999 9999999999999999999999999999997766655  99999999999


Q ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC----CCCchh-hHHHHHHHHHHHHhcCCChhhHHHHHH
Q 026491           95 RRAYALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDH----TMKLPY-FIAIAGFVCALFAIGIPNLSALGVWLG  169 (238)
Q Consensus        95 ~~~~~~v~~~~~i~~~g~~v~yli~~~~~l~~~~~~~~~~~~----~~~~~~-~iii~~~~~~lpl~~l~~l~~l~~~S~  169 (238)
                      +.++....+......+| |++|+++.||.++.+......++.    ..+++. |++....++ +||+..|++.++++.|.
T Consensus        79 ~~g~~~~~v~~~~~~~g-~i~yliiigd~~p~~~~~~~~~~~~~~~~~~~~~~ill~~~~~i-~pLsl~k~l~~Lk~tS~  156 (411)
T KOG1305|consen   79 KLGKVDAAVAVKCFGVG-MVSYLIIIGDLLPGFIRSLFLDEEGGSHYLDRNFLILLVLLFII-LPLSLLKNLDSLKYTSA  156 (411)
T ss_pred             CCceeeehhhHHhhhcc-ceEEEEEEccccchhhhhcccccccccccccceeEeehHHHHHH-HHHHHHHhhhhHHHHHH
Confidence            99966555555555556 699999999999977665332211    123333 466665555 89999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhcCCCCCCCcCCCCCCcchhhhhhHhHHHHHHHHhc-cCchhhhhhcccCCC
Q 026491          170 VSTVLSTIYIVIAIWLSVRDGLKNPARDYSIPGTTATKIFESIGACANLVFAFN-TGMLPEIQVREEFRS  238 (238)
Q Consensus       170 ~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~a~gi~~Fafg-~~v~p~I~~~M~~~~  238 (238)
                      ++.+....+.++++...+......+...+..  .....+++.+.++++++|||. |....++++||||||
T Consensus       157 ~s~~~~~~fv~~vv~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~pi~~faf~Ch~n~~~i~~El~~~s  224 (411)
T KOG1305|consen  157 LSLASVVYFVVLVVYKYFQGPCALGRLSYLV--PNLSSFSSLFYALPIFVFAFTCHSNVFPIYNELKDRS  224 (411)
T ss_pred             HHHHHHHHHHHHHHHHHHhcccccCCccccc--CCcchhhhhhhhhhhhheeeeccccceeeeeeeeCch
Confidence            9987655554444433333221011111111  111123678999999999995 877778999999997

>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]

Probab=99.93  E-value=2.5e-24  Score=195.63  Aligned_cols=219  Identities=17%  Similarity=0.110  Sum_probs=174.0

Q ss_pred             cccccchhHHHHHHHHhhhhhhhhhhhhHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhccccCCcccCcHHHHHHHHc
Q 026491           14 HLEMLDSWFQVGFVLTTGINSAYVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKLHEFGGKRHIRYRDLAGHIY   93 (238)
Q Consensus        14 ~~~~~~s~~~a~~~l~~~~iG~GiLalP~a~~~~~G~~~G~i~l~~~~~~~~yt~~lL~~~~~~~~~~~~sY~~l~~~~~   93 (238)
                      ..+.+.+..+++.++.++.+|+|+|++|++ ++..|++++++++++.+..++++.+++.++..+.+++..+|.+++++.+
T Consensus         4 ~~~~~~s~~~~vl~l~gT~IGAGvL~lP~a-~~~~G~~~~l~~l~i~~~~t~~s~~~l~~~~~~~~~~~~~~~~~~~~~~   82 (415)
T COG0814           4 SMKKTSSDLGGVLILAGTAIGAGVLFLPVA-FGGGGFWPGLLLLIIAWPLTYLSLLLLLEALLSSPNGKASITSLVEDYL   82 (415)
T ss_pred             cccCCcchHHHHHHHHccccccchhhhhHH-hcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHh
Confidence            455677899999999999999999999999 9999999999999999999999999999997655443358999999999


Q ss_pred             CccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhcCCChhhHHHHHHHHHH
Q 026491           94 GRRAYALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTMKLPYFIAIAGFVCALFAIGIPNLSALGVWLGVSTV  173 (238)
Q Consensus        94 G~~~~~~v~~~~~i~~~g~~v~yli~~~~~l~~~~~~~~~~~~~~~~~~~iii~~~~~~lpl~~l~~l~~l~~~S~~~~~  173 (238)
                      ||+++++.++...+.+++.+.+|.+..||.+++.++.... .+...++.+.+++..++ .++++.++...+++.|.+...
T Consensus        83 G~~~~~li~~s~~~~~~~~~~aY~~~~g~~l~~~~~~~~~-~~~~~r~~~~lif~~~~-~~l~~~~~~~~lk~ts~l~~~  160 (415)
T COG0814          83 GKKGGILIGLSYFFALYGLLVAYIVGIGNLLASFLGNQFG-LNPLPRKLGSLIFALVL-AFLSWLGTLAVLKITSLLVFG  160 (415)
T ss_pred             CcchHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHhhcc-cCCcchHHHHHHHHHHH-HHHHHhchhHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999986431 11266777788888777 689999999999999999976


Q ss_pred             HHHHHHHHHHHHHhhcCCCCCCCcCCCCCCcchhhhhhHhHHHHHHHHhc-cCchhhhhhcccCCC
Q 026491          174 LSTIYIVIAIWLSVRDGLKNPARDYSIPGTTATKIFESIGACANLVFAFN-TGMLPEIQVREEFRS  238 (238)
Q Consensus       174 ~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~a~gi~~Fafg-~~v~p~I~~~M~~~~  238 (238)
                      .....++ .....+.+.  +++.....+.........+..++|+++|||+ |.++|+++++||+++
T Consensus       161 ~v~~~~~-l~~~~~~~~--~~~~l~~~~~~~~~~~~~~~~~ipv~vfsF~~h~~i~si~~~~~~~~  223 (415)
T COG0814         161 KVIYLVL-LVVYLIPHW--NPANLFALPSASQSFWKYLLLAIPVFVFSFGFHGNIPSLVNYMRKNS  223 (415)
T ss_pred             HHHHHHH-HHHHHhccc--CHHHHhcccccchhhHHHHHHHhhHHHhhhhCCccchHHHHHhccch
Confidence            5433332 222222211  1110000000112334567889999999998 999999999999874

>PRK10483 tryptophan permease; Provisional

Probab=99.71  E-value=1.4e-15  Score=137.40  Aligned_cols=214  Identities=12%  Similarity=0.083  Sum_probs=147.7

Q ss_pred             cccccchhHHHHHHHHhhhhhhhhhhhhHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhccccCCcccCcHHHHHHHHc
Q 026491           14 HLEMLDSWFQVGFVLTTGINSAYVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKLHEFGGKRHIRYRDLAGHIY   93 (238)
Q Consensus        14 ~~~~~~s~~~a~~~l~~~~iG~GiLalP~a~~~~~G~~~G~i~l~~~~~~~~yt~~lL~~~~~~~~~~~~sY~~l~~~~~   93 (238)
                      +++++++.+++..-+..+.+|+||||+|.+ .++.|+.++++++++++....||..++.+...+.+ +..++..++|+.+
T Consensus         6 ~~~~~~~~~g~~~iIaGT~IGaGMLaLP~~-~a~~GF~~s~~~l~~~W~~M~~taLlllEv~l~~~-~g~~~~tma~~~L   83 (414)
T PRK10483          6 TTQTSPSLLGGVVIIGGTIIGAGMFSLPVV-MSGAWFFWSMAALIFTWFCMLHSGLMILEANLNYR-IGSSFDTITKDLL   83 (414)
T ss_pred             cccCCCcHHHHHHHHHHchHhHHHHHHHHH-HHhccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCCCHHHHHHHHc
Confidence            467788999999999999999999999999 99999999999999999999999999999855443 2468999999999


Q ss_pred             CccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhcCCChhhHHHHHHHHHH
Q 026491           94 GRRAYALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTMKLPYFIAIAGFVCALFAIGIPNLSALGVWLGVSTV  173 (238)
Q Consensus        94 G~~~~~~v~~~~~i~~~g~~v~yli~~~~~l~~~~~~~~~~~~~~~~~~~iii~~~~~~lpl~~l~~l~~l~~~S~~~~~  173 (238)
                      ||+++.+.++......++.+++|+--.||.+++.++...   .+.+++.=.+++.++. -...+.. .|...+++-+=..
T Consensus        84 G~~g~~i~~~s~lfl~Y~Ll~AYisg~g~il~~~l~~~~---~~i~~~~~~llF~~~~-~~iv~~g-t~~vd~~n~~l~~  158 (414)
T PRK10483         84 GKGWNVVNGISIAFVLYILTYAYISASGSILHHTFAEMS---LNVPARAAGFGFALLV-AFVVWLS-TKAVSRMTAIVLG  158 (414)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHhcC---CCCcHHHHHHHHHHHH-HHHHHhh-hhHHHHHHHHHHH
Confidence            999999999999999999999999999999999886521   1223332233333333 2333333 2555444433222


Q ss_pred             HHHHHHHHHHHHHhhcCCCCCCCcCCCCCCcchhhhhhHhHHHHHHHHhc-cCchhhhhhcccC
Q 026491          174 LSTIYIVIAIWLSVRDGLKNPARDYSIPGTTATKIFESIGACANLVFAFN-TGMLPEIQVREEF  236 (238)
Q Consensus       174 ~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~a~gi~~Fafg-~~v~p~I~~~M~~  236 (238)
                      ..+...++.+ .......+ ++.-.+...........++.++|++++||+ |+++|++.+.+++
T Consensus       159 ~~i~~f~~~~-~~l~~~i~-~~~L~~~~~~~~~~~~~~~~alPvl~~SFgfh~iIPsl~~y~~~  220 (414)
T PRK10483        159 AKVITFFLTF-GSLLGHVQ-PATLFNVAESNASYAPYLLMTLPFCLASFGYHGNVPSLMKYYGK  220 (414)
T ss_pred             HHHHHHHHHH-HHHHhhcC-HHHHhccccccchhHHHHHHHHHHHHhhccCCCcchHHHHHhCc
Confidence            1111111111 11111111 000000000111112236789999999999 9999999988765

>PRK09664 tryptophan permease TnaB; Provisional

Probab=99.70  E-value=2.1e-15  Score=136.27  Aligned_cols=209  Identities=16%  Similarity=0.089  Sum_probs=144.6

Q ss_pred             cccchhHHHHHHHHhhhhhhhhhhhhHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhccccCCcccCcHHHHHHHHcCc
Q 026491           16 EMLDSWFQVGFVLTTGINSAYVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKLHEFGGKRHIRYRDLAGHIYGR   95 (238)
Q Consensus        16 ~~~~s~~~a~~~l~~~~iG~GiLalP~a~~~~~G~~~G~i~l~~~~~~~~yt~~lL~~~~~~~~~~~~sY~~l~~~~~G~   95 (238)
                      |+|.+..+++.-+..+.+|+||||+|.+ .++.|+.++++++++++....||..++.+...+.+ +..++..++|+.+||
T Consensus         6 ~~~~~~~gg~~iIaGT~IGAGMLaLP~~-~a~~Gf~~s~~ll~~~w~~M~~t~LlllEv~l~~~-~g~~l~tma~~~LG~   83 (415)
T PRK09664          6 EKKHSAFWGVMVIAGTVIGGGMFALPVD-LAGAWFFWGAFILIIAWFSMLHSGLLLLEANLNYP-VGSSFNTITKDLIGN   83 (415)
T ss_pred             hhccchhhhhHHhhhccHhHHHHHHHHH-HhcccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCCCHHHHHHHHcCh
Confidence            4455888899999999999999999999 99999999999999999999999999999865443 346899999999999


Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHH
Q 026491           96 RAYALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTMKLPYFIAIAGFVCALFAIGIPNLSALGVWLGVSTVLS  175 (238)
Q Consensus        96 ~~~~~v~~~~~i~~~g~~v~yli~~~~~l~~~~~~~~~~~~~~~~~~~iii~~~~~~lpl~~l~~l~~l~~~S~~~~~~~  175 (238)
                      +++.+.++......++.+++|+--.|+.+++.++...  +.+.+.+.-.++++.+. -+..+..+ |...+.+-+=....
T Consensus        84 ~g~~i~~~~~~fl~Y~Ll~AYisggG~il~~~l~~~~--~~~i~~~~~~llF~~~~-~~~v~~gt-~~vd~~nr~l~~~~  159 (415)
T PRK09664         84 TWNIISGITVAFVLYILTYAYISANGAIISETISMNL--GYHANPRIVGICTAIFV-ASVLWISS-LAASRITSLFLGLK  159 (415)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhhhc--cCCCcHHHHHHHHHHHH-HHHHHhch-hHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999886521  11223332233444433 23334443 55444443322111


Q ss_pred             HHHHHHHHHHHhhcCCCCCCCcCC-CCCCc-ch---h-hhhhHhHHHHHHHHhc-cCchhhhhhcccC
Q 026491          176 TIYIVIAIWLSVRDGLKNPARDYS-IPGTT-AT---K-IFESIGACANLVFAFN-TGMLPEIQVREEF  236 (238)
Q Consensus       176 ~~~~~i~~~~~i~~~~~~~~~~~~-~~~~~-~~---~-~~~~~~a~gi~~Fafg-~~v~p~I~~~M~~  236 (238)
                      +...++.+ ....     |+.+.+ +...+ ..   . ...++.++|+++++|| |+++|++.+.+++
T Consensus       160 ii~f~~~~-~~l~-----~~i~~~~L~~~~~~~~~~~~~~~i~~alPVl~~SFgfh~iIPsl~~y~~~  221 (415)
T PRK09664        160 IISFVIVF-GSFF-----FQVDYSILRDATSTTAGTSYFPYIFMALPVCLASFGFHGNIPSLIICYGK  221 (415)
T ss_pred             HHHHHHHH-HHHh-----hcccHHHHhcCccccccchHHHHHHHHHHHHHHhhhCCCcchHHHHHhCc
Confidence            11111111 1111     111111 11101 00   1 1236679999999999 9999999887764

>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell

Probab=99.67  E-value=8.1e-15  Score=132.60  Aligned_cols=210  Identities=13%  Similarity=0.045  Sum_probs=144.9

Q ss_pred             ccchhHHHHHHHHhhhhhhhhhhhhHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhccccCCcccCcHHHHHHHHcCcc
Q 026491           17 MLDSWFQVGFVLTTGINSAYVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKLHEFGGKRHIRYRDLAGHIYGRR   96 (238)
Q Consensus        17 ~~~s~~~a~~~l~~~~iG~GiLalP~a~~~~~G~~~G~i~l~~~~~~~~yt~~lL~~~~~~~~~~~~sY~~l~~~~~G~~   96 (238)
                      +|.+.+++++-+..+.+|+|+|+||.+ .+..|+.+.++.+++.+.+.+||..++.|...+.++ ..+|.+++++.+||+
T Consensus         1 ~~~~~~~~~~li~GTaIGAGmLaLP~~-~~~~Gf~~~~~~l~~~w~~~~~s~l~~~E~~~~~~~-~~~~~~~a~~~lG~~   78 (394)
T PF03222_consen    1 KNNSILGGVLLIAGTAIGAGMLALPIA-TAGAGFLPSLILLLIAWPLMYYSGLLLAEVSLNTPE-GSSLTSMAEKYLGKK   78 (394)
T ss_pred             CCchHHHHHHHHHHccHhHHHHHHHHH-HHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CCCHHHHHHHHhChH
Confidence            356888999999999999999999999 999999999999999999999999999998543332 468999999999999


Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHH
Q 026491           97 AYALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTMKLPYFIAIAGFVCALFAIGIPNLSALGVWLGVSTVLST  176 (238)
Q Consensus        97 ~~~~v~~~~~i~~~g~~v~yli~~~~~l~~~~~~~~~~~~~~~~~~~iii~~~~~~lpl~~l~~l~~l~~~S~~~~~~~~  176 (238)
                      ++++..+...+..++.+++|..-.|+.+++.++....  .+.+++.-.+++.++. -.+... .-|.+...+-+-+...+
T Consensus        79 g~~~~~~~~~~~~y~ll~AYisg~g~~~~~~l~~~~~--~~~~~~~~~~~f~~i~-~~iv~~-g~~~v~~~n~~lv~~~i  154 (394)
T PF03222_consen   79 GGIVIGISYLFLLYALLVAYISGGGSILSSLLGNQLG--TDLSPWLSSLLFTIIF-GGIVYF-GTKAVDRINRVLVFGMI  154 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHhcC--CCCcHHHHHHHHHHHH-HHHHHh-hHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999876542  2233333223333222 122222 22344444333322211


Q ss_pred             HHHHHHHHHHhhcCCCCCCCcCCCC-CCcchhhhhhHhHHHHHHHHhc-cCchhhhhhcccC
Q 026491          177 IYIVIAIWLSVRDGLKNPARDYSIP-GTTATKIFESIGACANLVFAFN-TGMLPEIQVREEF  236 (238)
Q Consensus       177 ~~~~i~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~a~gi~~Fafg-~~v~p~I~~~M~~  236 (238)
                      ......+...+.+..    .+.-.. .....++..++.++|+.++||+ |+++|++.+.+++
T Consensus       155 ~~~~~l~~~~~p~~~----~~~L~~~~~~~~~~~~~~~~lPv~~~Sf~f~~ivPsl~~~~~~  212 (394)
T PF03222_consen  155 ISFIILVVYLIPHWN----PSNLLDAPPSPSDWSYILPALPVLVFSFGFHNIVPSLVKYLGG  212 (394)
T ss_pred             HHHHHHHHHHhhhcC----HHHhhccccccccHHHHHHHHHHHHHHHHHHhhhHHHHHHhCc
Confidence            111111111222111    110001 1111234456789999999999 9999999888774

A number of such proteins have been found to be evolutionary related [, , ]. Aromatic amino acids are concentrated in the cytoplasm of Escherichia coli by 4 distinct transport systems: a general aromatic amino acid permease, and a specific permease for each of the 3 types (Phe, Tyr and Trp) []. It has been shown [] that some permeases in E. coli and related bacteria are evolutionary related. These permeases are proteins of about 400 to 420 amino acids and are located in the cytoplasmic membrane and, like bacterial sugar/cation transporters, are thought to contain 12 transmembrane (TM) regions [] - hydropathy analysis, however, is inconclusive, suggesting the possibility of 10 to 12 membrane-spanning domains []. The best conserved domain is a stretch of 20 residues which seems to be located in a cytoplasmic loop between the first and second transmembrane region.

>PRK15132 tyrosine transporter TyrP; Provisional

Probab=99.65  E-value=1.7e-14  Score=130.47  Aligned_cols=207  Identities=14%  Similarity=0.092  Sum_probs=143.3

Q ss_pred             cchhHHHHHHHHhhhhhhhhhhhhHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhccccCCcccCcHHHHHHHHcCccc
Q 026491           18 LDSWFQVGFVLTTGINSAYVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKLHEFGGKRHIRYRDLAGHIYGRRA   97 (238)
Q Consensus        18 ~~s~~~a~~~l~~~~iG~GiLalP~a~~~~~G~~~G~i~l~~~~~~~~yt~~lL~~~~~~~~~~~~sY~~l~~~~~G~~~   97 (238)
                      |++.+++.+-+..+.+|+|+|+||.+ .+..|+.++++++++++.+..|+.+++.|...+.+ +..++.+++|+.+||++
T Consensus         2 ~~~~~g~~~li~GTaIGAGmLaLPi~-~~~~Gf~~~~~~li~~w~~m~~t~l~l~Ev~~~~~-~~~~~~~~a~~~LG~~g   79 (403)
T PRK15132          2 KNRTLGSIFIVAGTTIGAGMLAMPLA-AAGVGFSVTLILLIGLWALMCYTALLLLEVYQHVP-ADTGLGTLAKRYLGRYG   79 (403)
T ss_pred             CccHHHHHHHHHhcchhHHHHHHHHH-HHhChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-CCCCHHHHHHHHhChHH
Confidence            34788999999999999999999999 99999999999999999999999999999754332 34689999999999999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHH
Q 026491           98 YALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTMKLPYFIAIAGFVCALFAIGIPNLSALGVWLGVSTVLSTI  177 (238)
Q Consensus        98 ~~~v~~~~~i~~~g~~v~yli~~~~~l~~~~~~~~~~~~~~~~~~~iii~~~~~~lpl~~l~~l~~l~~~S~~~~~~~~~  177 (238)
                      +++.++......+..+.+|..-.|+.+.+..+++..  ...+.....+++.++. -...+.. -|..-+++-+=....+.
T Consensus        80 ~~i~~~~y~fl~y~ll~AYisg~g~il~~~l~~~~~--~~i~~~~~~l~F~~~~-~~iv~~g-~~~v~~~n~~L~~~~ii  155 (403)
T PRK15132         80 QWLTGFSMMFLMYALTAAYISGAGELLASSISDWTG--ISMSPTAGVLLFTLVA-GGVVCVG-TSSVDLFNRFLFSAKII  155 (403)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHhcc--CCCChHHHHHHHHHHH-HHHHhcc-HHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999988876542  2233344455554443 1222333 24444333332211111


Q ss_pred             HHHHHHHHHhhcCCCCCCCcCCCCCCcchhhhhhHhHHHHHHHHhc-cCchhhhhhcccC
Q 026491          178 YIVIAIWLSVRDGLKNPARDYSIPGTTATKIFESIGACANLVFAFN-TGMLPEIQVREEF  236 (238)
Q Consensus       178 ~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~a~gi~~Fafg-~~v~p~I~~~M~~  236 (238)
                      ..+......+.+..    .+ .+...+... .-++.++|+++|||| |+++|++.+.+++
T Consensus       156 ~~~~~~~~l~p~~~----~~-~L~~~~~~~-~~~~~~iPvl~~SFgfh~iIpsl~~y~~~  209 (403)
T PRK15132        156 FLVVMLALMMPHIH----KV-NLLTLPLQQ-GLALSAIPVIFTSFGFHGSVPSIVSYMGG  209 (403)
T ss_pred             HHHHHHHHHHHhcC----HH-HHhcCCccc-cHHHHHHHHHHHHhhCCcccHHHHHHhCc
Confidence            11111111122111    00 111001100 126789999999999 9999999988764

>TIGR00837 araaP aromatic amino acid transport protein

Probab=99.61  E-value=2.9e-14  Score=128.25  Aligned_cols=204  Identities=12%  Similarity=0.030  Sum_probs=144.2

Q ss_pred             HHHHHhhhhhhhhhhhhHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhccccCCcccCcHHHHHHHHcCccchhHHHHH
Q 026491           25 GFVLTTGINSAYVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKLHEFGGKRHIRYRDLAGHIYGRRAYALTWGL  104 (238)
Q Consensus        25 ~~~l~~~~iG~GiLalP~a~~~~~G~~~G~i~l~~~~~~~~yt~~lL~~~~~~~~~~~~sY~~l~~~~~G~~~~~~v~~~  104 (238)
                      +..+.++++|+|++++|.+ +++.|+.++.+.+++.+.++.++..++.+...+.. +..+|.+.+++++||++++++++.
T Consensus         3 ~~lv~gt~IGaGIl~lP~~-~a~~g~~~~~~~~i~~~~~~~~~~l~~~el~~~~p-~~~~~~~~~~~~~G~~~g~~~~~~   80 (381)
T TIGR00837         3 ALIIAGTTIGAGMLALPTS-TAGAWFIWTLLLLILLWFLMLHSGLLLLEVYLTYP-GGASFNTIAKDLLGKTGNIIAGLS   80 (381)
T ss_pred             eEEeehhhHhHHHHHHHHH-HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CCCCHHHHHHHHhCHHHHHHHHHH
Confidence            3456789999999999999 99999999999999999999999999999854332 235899999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHHHHHH
Q 026491          105 QYVNLFMINTGYIILAGQALKAAFVLFWKDDHTMKLPYFIAIAGFVCALFAIGIPNLSALGVWLGVSTVLSTIYIVIAIW  184 (238)
Q Consensus       105 ~~i~~~g~~v~yli~~~~~l~~~~~~~~~~~~~~~~~~~iii~~~~~~lpl~~l~~l~~l~~~S~~~~~~~~~~~~i~~~  184 (238)
                      ..+.++..+++|.+..++.+..+++.+..+  ....+.+.+++.+++ .++ ..+..|..+.++.+.....+...++.+.
T Consensus        81 ~~~~~~~~~~ay~~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~v~-~~l-~~~G~~~~~~v~~i~~~~~l~~l~~~ii  156 (381)
T TIGR00837        81 LLFVLYILTYAYISGGGSILSRLIGEYFGF--PWSARAIVLIFTVLF-GSF-VWLSTSAVDRITRVLIFGKIIAFALVFS  156 (381)
T ss_pred             HHHHHHHHHHHHHHccHHHHHHHHHHhcCC--CccHHHHHHHHHHHH-HHH-HHhchhHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999988754321  233333344444333 344 3455678888777776544443333222


Q ss_pred             HHhhcCCCCCCCcCCCCCCcchhhhhhHhHHHHHHHHhc-cCchhhhhhcccCC
Q 026491          185 LSVRDGLKNPARDYSIPGTTATKIFESIGACANLVFAFN-TGMLPEIQVREEFR  237 (238)
Q Consensus       185 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~a~gi~~Fafg-~~v~p~I~~~M~~~  237 (238)
                      ..+.+.+.+   +............+++.++++..++|| |.++|++.++|+|+
T Consensus       157 ~~~~~~~~~---~~~~~~~~~~~~~~~~~a~~~~~~~fg~~~~i~~~~~~~~~~  207 (381)
T TIGR00837       157 GLLPHVKGD---LLLDVALDTSYWPYILSALPVCLTSFGFHGNVPSLYKYYDGN  207 (381)
T ss_pred             HHHhhccHH---HHhcCccccccHHHHHHHHHHHHHHHHcccccHHHHHHhccC
Confidence            233322110   000000001123456788999999998 88899988888643

aromatic amino acid transporters and includes the tyrosine permease, TyrP, of E. coli, and the tryptophan transporters TnaB and Mtr of E. coli.

>PRK13629 threonine/serine transporter TdcC; Provisional

Probab=99.53  E-value=1.6e-12  Score=117.98  Aligned_cols=208  Identities=12%  Similarity=0.024  Sum_probs=134.4

Q ss_pred             HHHHHhhhhhhhhhhhhHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhccccCCcccCcHHHHHHHHcCccchhHHHHH
Q 026491           25 GFVLTTGINSAYVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKLHEFGGKRHIRYRDLAGHIYGRRAYALTWGL  104 (238)
Q Consensus        25 ~~~l~~~~iG~GiLalP~a~~~~~G~~~G~i~l~~~~~~~~yt~~lL~~~~~~~~~~~~sY~~l~~~~~G~~~~~~v~~~  104 (238)
                      ...+..+.+|+|+|+||-. ....|..+.++++++...+++|+.+.|.|......++..+|.+++++.+||+++.+.++.
T Consensus        25 ~l~l~GTAIGAGmLfLPI~-~g~~Gf~p~lillll~~p~m~~s~l~L~e~~L~~~~~~~~i~~v~~~~lG~~g~~i~~il  103 (443)
T PRK13629         25 TLGLFGTAIGAGVLFFPIR-AGFGGLIPILLMLVLAYPIAFYCHRALARLCLSGSNPSGNITETVEEHFGKTGGVVITFL  103 (443)
T ss_pred             HHHHHHHHHhHHHHHHHHH-HhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCHHHHHHHHcChhHHHHHHHH
Confidence            3779999999999999999 999999999999999999999999999998443223346899999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHHHHHH
Q 026491          105 QYVNLFMINTGYIILAGQALKAAFVLFWKDDHTMKLPYFIAIAGFVCALFAIGIPNLSALGVWLGVSTVLSTIYIVIAIW  184 (238)
Q Consensus       105 ~~i~~~g~~v~yli~~~~~l~~~~~~~~~~~~~~~~~~~iii~~~~~~lpl~~l~~l~~l~~~S~~~~~~~~~~~~i~~~  184 (238)
                      .++..+-.+.+|.....+.+.....++. +....++....+++.+.+ .......+ |.+-+++-+=+..-+...+....
T Consensus       104 Yff~ly~ll~aY~~~itn~l~sfl~~ql-~~~~~~r~l~slifv~~l-~~iv~~G~-~~v~kv~~~Lv~~~i~~l~~l~~  180 (443)
T PRK13629        104 YFFAICPLLWIYGVTITNTFMTFWENQL-GFAPLNRGFVALFLLLLM-AFVIWFGK-DLMVKVMSYLVWPFIASLVLISL  180 (443)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhc-CcCCccHHHHHHHHHHHH-HHHHHhhH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999888888877554432 111233333344443333 23323332 44444433322111111111111


Q ss_pred             HHhhcCCCCCCCcCCC---CCCcchh-hhhhHhHHHHHHHHhc-cCchhhhhhcccC
Q 026491          185 LSVRDGLKNPARDYSI---PGTTATK-IFESIGACANLVFAFN-TGMLPEIQVREEF  236 (238)
Q Consensus       185 ~~i~~~~~~~~~~~~~---~~~~~~~-~~~~~~a~gi~~Fafg-~~v~p~I~~~M~~  236 (238)
                      ..+.+...+.-.+.+.   +...... ...+..++|+++|+|+ |+.+|++...+|+
T Consensus       181 ~LiP~w~~~~L~~~~~~~~~~~~~~~~~~~l~~~iPv~v~SF~f~~iIssl~~y~r~  237 (443)
T PRK13629        181 SLIPYWNSAVIDQVDLGSLSLTGHDGILVTVWLGISIMVFSFNFSPIVSSFVVSKRE  237 (443)
T ss_pred             HHHHHcCHHHHhcCccccccccccccHHHHHHHHHHHHHHHHhccccchHHHHHHHH
Confidence            2222221100000000   0000001 1236778999999999 8999998888544

>TIGR00814 stp serine transporter

Probab=99.36  E-value=1.5e-10  Score=104.85  Aligned_cols=200  Identities=15%  Similarity=0.023  Sum_probs=134.0

Q ss_pred             HHHHHhhhhhhhhhhhhHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhccccCCcccCcHHHHHHHHcCccchhHHHHH
Q 026491           25 GFVLTTGINSAYVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKLHEFGGKRHIRYRDLAGHIYGRRAYALTWGL  104 (238)
Q Consensus        25 ~~~l~~~~iG~GiLalP~a~~~~~G~~~G~i~l~~~~~~~~yt~~lL~~~~~~~~~~~~sY~~l~~~~~G~~~~~~v~~~  104 (238)
                      .+.+..+.+|+|+|++|.. .++.||...++..++...+++++.+++.|.......+..++.|++++.|||+++.+.++.
T Consensus         9 ~~~l~gt~IGaGiL~LP~~-ag~~G~i~~li~~l~~~pl~~~~~~ll~~~~l~~~~p~~~i~~~~~~~fGk~~G~ii~~l   87 (397)
T TIGR00814         9 MLGLYGTAIGAGVLFLPIQ-AGLGGLWVLVLMAIIAYPLTYFGHRALARFLLSSKNPCEDITEVVEEHFGKNWGILITLL   87 (397)
T ss_pred             HHHHHHHHHHHHHHHHHHH-HHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHcCHHHHHHHHHH
Confidence            5678899999999999999 999999999998988888999999999887332222246899999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHHHHHH
Q 026491          105 QYVNLFMINTGYIILAGQALKAAFVLFWKDDHTMKLPYFIAIAGFVCALFAIGIPNLSALGVWLGVSTVLSTIYIVIAIW  184 (238)
Q Consensus       105 ~~i~~~g~~v~yli~~~~~l~~~~~~~~~~~~~~~~~~~iii~~~~~~lpl~~l~~l~~l~~~S~~~~~~~~~~~~i~~~  184 (238)
                      .....+..+.+|....++.+.+........+  ...+ +.....+++++-.......+.+..++-+-....+...++...
T Consensus        88 Y~~~~~~i~~aY~~~~~~~~~~fl~~~~~~~--~p~~-~i~~lilv~il~~iv~~G~~~i~r~~~il~~~~ii~l~~l~~  164 (397)
T TIGR00814        88 YFFAIYPILLIYSVAITNDSASFLVNQLGTA--PPLR-GLLSLALILILVAIMSFGEKLLFKIMGPLVFPLVLILVLLSL  164 (397)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--CcHH-HHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999988876543211  1222 222211211112333446677766666554322222222222


Q ss_pred             HHhhcCCCCCCCcCCCCCCcchhhhhhHhHHHHHHHHhc-cCchhhhh
Q 026491          185 LSVRDGLKNPARDYSIPGTTATKIFESIGACANLVFAFN-TGMLPEIQ  231 (238)
Q Consensus       185 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~a~gi~~Fafg-~~v~p~I~  231 (238)
                      ..+.+.+.  +.-...+ .......++..+.+..+|||+ |..+|++.
T Consensus       165 ~lip~~~~--~~L~~~p-~~~~~~~~i~~alpv~~~SF~~~~iIssl~  209 (397)
T TIGR00814       165 YLIPHWNG--ANLTTFP-SFNGFLKTLWLTIPVMVFSFNHSPIISSFA  209 (397)
T ss_pred             HHHHHcCH--HHHhcCC-cccchHHHHHHHHHHHHHHHHccccchHHH
Confidence            33332211  0000001 011123457789999999997 89999886

The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.

>PRK10655 potE putrescine transporter; Provisional

Probab=98.81  E-value=1.6e-06  Score=79.51  Aligned_cols=212  Identities=12%  Similarity=-0.013  Sum_probs=112.8

Q ss_pred             ccccchhHHHHHHHHhhhhhhhhhhhhHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhc---cccCCcccCcHHHHHHH
Q 026491           15 LEMLDSWFQVGFVLTTGINSAYVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKL---HEFGGKRHIRYRDLAGH   91 (238)
Q Consensus        15 ~~~~~s~~~a~~~l~~~~iG~GiLalP~a~~~~~G~~~G~i~l~~~~~~~~yt~~lL~~~---~~~~~~~~~sY~~l~~~   91 (238)
                      ++||-+.+++..-.+.+++|+|++.+|.. +++.|- .+++..++.+++.+.......+.   .++.|    ..-+-+++
T Consensus         4 ~~~~l~~~~~~~l~vg~~iGsGif~~p~~-~~~~G~-~~~~~w~i~~~~~~~~a~~~aeL~~~~P~~G----G~y~y~~~   77 (438)
T PRK10655          4 KSNKMGVVQLTILTAVNMMGSGIIMLPTK-LAQVGT-ISILSWLVTAVGSMALAYAFAKCGMFSRKSG----GMGGYAEY   77 (438)
T ss_pred             ccCcccHHHHHHHHHHhhhhhHHHHhHHH-HHHhhH-HHHHHHHHHHHHHHHHHHHHHHHhhhCCCCC----chHHHHHH
Confidence            56778999999999999999999999998 888886 56777777777766666666654   23332    33455568


Q ss_pred             HcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhcCCChhhHHHHHHHH
Q 026491           92 IYGRRAYALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTMKLPYFIAIAGFVCALFAIGIPNLSALGVWLGVS  171 (238)
Q Consensus        92 ~~G~~~~~~v~~~~~i~~~g~~v~yli~~~~~l~~~~~~~~~~~~~~~~~~~iii~~~~~~lpl~~l~~l~~l~~~S~~~  171 (238)
                      .+||+...++.....+.......+.-+...+.+..+++.     .......+.+...++..+-..-.+..|..+.+..+.
T Consensus        78 ~~G~~~gf~~gw~~~~~~~~~~~~~a~~~~~y~~~~~~~-----~~~~~~~~~~~~~~l~~~~~ln~~g~~~~~~i~~i~  152 (438)
T PRK10655         78 AFGKSGNFMANYTYGVSLLIANVAIAISAVGYGTELFGA-----TLSPVQICLATIGVLWLCTVANFGGARITGQISSVT  152 (438)
T ss_pred             HcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-----ccchHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence            899988877777665544433333333334444443321     111112222222111101111223444444444433


Q ss_pred             HHHHHHHHHHHHHHHhhcCCCCCCCcCCCCCCcchhhhhhHhHHHHHHHHh-ccCchhhhhhcccCCC
Q 026491          172 TVLSTIYIVIAIWLSVRDGLKNPARDYSIPGTTATKIFESIGACANLVFAF-NTGMLPEIQVREEFRS  238 (238)
Q Consensus       172 ~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~a~gi~~Faf-g~~v~p~I~~~M~~~~  238 (238)
                      ....+.-.++...........+ ..+....+.......++..++....|+| |......+-+|+|||.
T Consensus       153 ~~~~l~~l~~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~  219 (438)
T PRK10655        153 VWGVIIPVVGLSIIGWFWFSPS-LYVAAWNPHHLPFFSAVGSSIAMTLWAFLGLESACANSDAVENPE  219 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHhCcc-cccCCcCccCCchHHHHHHHHHHHHHHHhhhhhhhhhHHHhhCcc
Confidence            3222221111111111111110 0010111111111234566788889999 5777777888888873

>TIGR01773 GABAperm gamma-aminobutyrate permease

Probab=98.72  E-value=1.6e-06  Score=79.94  Aligned_cols=213  Identities=14%  Similarity=0.097  Sum_probs=122.1

Q ss_pred             cccccchhHHHHHHHHhhhhhhhhhhhhHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhccc-cCCcccCcHHHHHHHH
Q 026491           14 HLEMLDSWFQVGFVLTTGINSAYVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKLHE-FGGKRHIRYRDLAGHI   92 (238)
Q Consensus        14 ~~~~~~s~~~a~~~l~~~~iG~GiLalP~a~~~~~G~~~G~i~l~~~~~~~~yt~~lL~~~~~-~~~~~~~sY~~l~~~~   92 (238)
                      +.+|+-+.++...-.+.+++|+|++.+|..+.++.|. .+++..++.+++.+.....+.+... .+.  .-...+.+++.
T Consensus         9 ~~~~~L~~~~~~~i~ig~~IGsGif~~~g~~~~~~G~-~~~i~~~i~~v~~~~~a~~~aEl~s~~P~--~Gg~~~~~~~~   85 (452)
T TIGR01773         9 KLPNGLKTRHVTMLSIAGVIGAGLFVGSGSAIASAGP-AALLAYLLAGLLVVFIMRMLGEMAVANPD--TGSFSTYADDA   85 (452)
T ss_pred             hHhCcCcHHHHHHHHHhhhhhchHHHhhHHHHHhcCC-HHHHHHHHHHHHHHHHHHHHHHHHHhcCC--CCCHHHHHHHH
Confidence            3566679999999999999999999999554888886 4677777777777766666666522 121  12466778899


Q ss_pred             cCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhcCCChhhHHHHHHHHH
Q 026491           93 YGRRAYALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTMKLPYFIAIAGFVCALFAIGIPNLSALGVWLGVST  172 (238)
Q Consensus        93 ~G~~~~~~v~~~~~i~~~g~~v~yli~~~~~l~~~~~~~~~~~~~~~~~~~iii~~~~~~lpl~~l~~l~~l~~~S~~~~  172 (238)
                      +||+..+++.....+.....+.+.....++.++.+++     +  .  ..|.+...+..+.-+.-.+..|..+.+..+..
T Consensus        86 ~g~~~gf~~gw~~~~~~~~~~~~~~~~~~~~l~~~~~-----~--~--~~~~~~~~~~~~~~~~n~~gv~~~~~~~~~~~  156 (452)
T TIGR01773        86 IGRWAGFTIGWLYWWFWVLVIPLEAIAAAGILQYWFP-----D--I--PLWLFSLILTIVLTLTNLYSVKSYGEFEFWFA  156 (452)
T ss_pred             hCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-----c--C--cHHHHHHHHHHHHHHHHHHhcchhhHHHHHHH
Confidence            9999988888887776666666666666666665432     1  1  23333222222111112233444444443332


Q ss_pred             HHHHHHHH--HHHHH-HhhcCCCCCCCc-C-CCC---CCcchhhhhhHhHHHHHHHHh-ccCchhhhhhcccCCC
Q 026491          173 VLSTIYIV--IAIWL-SVRDGLKNPARD-Y-SIP---GTTATKIFESIGACANLVFAF-NTGMLPEIQVREEFRS  238 (238)
Q Consensus       173 ~~~~~~~~--i~~~~-~i~~~~~~~~~~-~-~~~---~~~~~~~~~~~~a~gi~~Faf-g~~v~p~I~~~M~~~~  238 (238)
                      +..+...+  ++... ....+.+..+.. . +..   +..+..+.+++.++....|+| |......+-+|+|||.
T Consensus       157 ~~ki~~l~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~~~~af~G~e~~~~~a~E~k~P~  231 (452)
T TIGR01773       157 LIKVIAIIAFIILGAVAIFGFAPGSEVSGFSNLTGKGGFFPNGIGAVLLAILVTMFSFMGTEIVTIAAAESSNPI  231 (452)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCCCCCCCccccccCCCCcCcccHHHHHHHHHHHHHHhccHHHHhHHHHhhcChh
Confidence            22111111  11111 111111110000 0 011   111112235778899999999 5777888889999873

GabP is highly homologous to amino acid permeases from B. subtilis, E. coli, as well as to other members of the amino acid permease family (pfam00324). A member of the APC (amine-polyamine-choline) transporter superfamily, GABA permease possesses a "consensus amphiphatic region" (CAR) found to be evolutionarily conserved within this transport family. This amphiphatic region is located between helix 8 and cytoplasmic loop 8-9, forming a potential channel domain and suggested to play a significant role in ligand recognition and translocation. Unique to GABA permeases, a conserved cysteine residue (CYS-300, E.coli) located at the beginning of the amphiphatic domain, has been determined to be critical for catalytic specificity.

>PRK10435 cadB lysine/cadaverine antiporter; Provisional

Probab=98.72  E-value=3.1e-06  Score=77.65  Aligned_cols=210  Identities=16%  Similarity=0.050  Sum_probs=109.0

Q ss_pred             cccccchhHHHHHHHHhhhhhhhhhhhhHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhc---cccCCcccCcHHHHHH
Q 026491           14 HLEMLDSWFQVGFVLTTGINSAYVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKL---HEFGGKRHIRYRDLAG   90 (238)
Q Consensus        14 ~~~~~~s~~~a~~~l~~~~iG~GiLalP~a~~~~~G~~~G~i~l~~~~~~~~yt~~lL~~~---~~~~~~~~~sY~~l~~   90 (238)
                      .++||-+.++...-.+.+++|+|++.+|.. .++.|-. .++..++.++...-......+.   +++.|   -.|. -++
T Consensus         2 ~~~~~lg~~~~~~l~vg~~IGsGif~lp~~-~a~~G~~-~i~~wli~~~~~l~~al~~aEL~s~~P~~G---G~y~-y~~   75 (435)
T PRK10435          2 SSAKKIGLFACTGVVAGNMMGSGIALLPAN-LASIGSI-AIWGWIISIIGAMSLAYVYARLATKNPQQG---GPIA-YAG   75 (435)
T ss_pred             CCCCcCCHHHHHHHHHhhHHHHHHHHHHHH-HHHhHHH-HHHHHHHHHHHHHHHHHHHHHHHhhCCCCC---ChhH-HHH
Confidence            467788999999999999999999999999 8888752 4445555555554444444444   33322   1233 335


Q ss_pred             HHcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhcCCChhhHHHHHHH
Q 026491           91 HIYGRRAYALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTMKLPYFIAIAGFVCALFAIGIPNLSALGVWLGV  170 (238)
Q Consensus        91 ~~~G~~~~~~v~~~~~i~~~g~~v~yli~~~~~l~~~~~~~~~~~~~~~~~~~iii~~~~~~lpl~~l~~l~~l~~~S~~  170 (238)
                      + +||...+++........+-...++.+..++.+..+++...   ....  .+++...++.++-+.-.+..|..+.++.+
T Consensus        76 ~-~g~~~gf~~gw~~~~~~~~~~~~~~~~~~~y~~~~~p~~~---~~~~--~~~~~~~i~~~~~~ln~~gvk~~~~i~~i  149 (435)
T PRK10435         76 E-ISPAFGFQTGVLYYHANWIGNLAIGITAVSYLSTFFPVLN---DPIP--AGIACIAIVWVFTFVNMLGGTWVSRLTTI  149 (435)
T ss_pred             H-HCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccC---ChHH--HHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence            5 7998877777665543433333444445555555443221   1111  11111111110111223444555554444


Q ss_pred             HHHHHHHHHHHHHHHHhhcCCCC-CCCcCCCCCCcchhhhhhHhHHHHHHHHh-ccCchhhhhhcccCC
Q 026491          171 STVLSTIYIVIAIWLSVRDGLKN-PARDYSIPGTTATKIFESIGACANLVFAF-NTGMLPEIQVREEFR  237 (238)
Q Consensus       171 ~~~~~~~~~~i~~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~a~gi~~Faf-g~~v~p~I~~~M~~~  237 (238)
                      ..+..+...+........+..++ ...++.  +.......++..++....|+| |.......-+|+|||
T Consensus       150 ~~~~~li~~~~~~i~g~~~~~~~~~~~~~~--~~~~~~~~~~~~a~~~~~faf~G~E~~~~~a~E~knP  216 (435)
T PRK10435        150 GLVLVLIPVVGTAIVGWHWFDAATYAANWN--TSDTTDGHAIIKSILLCLWAFVGVESAAVSTGMVKNP  216 (435)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCHHhhccccc--CCCCchHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCc
Confidence            33222211111111111111110 000111  111123456778899999999 577778888888887

>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family

Probab=98.69  E-value=6.2e-06  Score=76.51  Aligned_cols=213  Identities=13%  Similarity=0.077  Sum_probs=110.2

Q ss_pred             cccchhHHHHHHHHhhhhhhhhhhhhHHhhhh-hhhHHHHHHHHHHHHHHHHHHHHHHhc---ccc-CCcccCcHHHHHH
Q 026491           16 EMLDSWFQVGFVLTTGINSAYVLGYPGTVMVP-LGWIAGVVGLIIATIVSLNANALIAKL---HEF-GGKRHIRYRDLAG   90 (238)
Q Consensus        16 ~~~~s~~~a~~~l~~~~iG~GiLalP~a~~~~-~G~~~G~i~l~~~~~~~~yt~~lL~~~---~~~-~~~~~~sY~~l~~   90 (238)
                      +|+-+.+++....+++++|+|++.+|.. .++ .|-...++..++.+++.........+.   .++ .|    ..-+..+
T Consensus         6 ~~~l~~~~~~~l~ig~vIGsGif~~~~~-~~~~~g~~~~~~~wli~~~~~~~~al~~aEl~s~~P~~sG----G~y~y~~   80 (473)
T TIGR00905         6 SKKLGLFALTALVIGSMIGSGIFSLPQN-LASVAGPGAVIIGWIITGVGMLALAFVFAILATKKPELDG----GIYAYAR   80 (473)
T ss_pred             CCCccHHHHHHHHHHHHHhHHHHHhHHH-HHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCC----ChhhhHH
Confidence            5678999999999999999999999998 554 432222344555555555554444444   333 33    2334558


Q ss_pred             HHcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhcCCChhhHHHHHHH
Q 026491           91 HIYGRRAYALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTMKLPYFIAIAGFVCALFAIGIPNLSALGVWLGV  170 (238)
Q Consensus        91 ~~~G~~~~~~v~~~~~i~~~g~~v~yli~~~~~l~~~~~~~~~~~~~~~~~~~iii~~~~~~lpl~~l~~l~~l~~~S~~  170 (238)
                      +.+||+..++......+.......++.....+.+..+++.+. ++  .....++....+..++-..-.+..|..+.+..+
T Consensus        81 ~~~G~~~gf~~gw~~~~~~~~~~~~~~~~~~~~l~~~~p~~~-~~--~~~~~~~~~~~~~~~~~~ln~~Gi~~~~~i~~~  157 (473)
T TIGR00905        81 EGFGPYIGFMSGWGYWLSAWIGNVAYAVLLFSALGYFFPLFG-SG--NPVPSILGASVLLWVFTFLVLRGVRQAAFINTI  157 (473)
T ss_pred             hHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc-CC--CcHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHH
Confidence            889999888887777665544455566666666666655322 11  111112211111111122234566666666665


Q ss_pred             HHHHHHHHHHHHHHHHhhcCCCC-CCCcCCCCCCc--chhhhhhHhHHHHHHHHh-ccCchhhhhhcccC
Q 026491          171 STVLSTIYIVIAIWLSVRDGLKN-PARDYSIPGTT--ATKIFESIGACANLVFAF-NTGMLPEIQVREEF  236 (238)
Q Consensus       171 ~~~~~~~~~~i~~~~~i~~~~~~-~~~~~~~~~~~--~~~~~~~~~a~gi~~Faf-g~~v~p~I~~~M~~  236 (238)
                      .....+...++.+...+.....+ ...+......+  ......+..++....|+| |......+-+|+||
T Consensus       158 ~~~~~l~~l~~~ii~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~  227 (473)
T TIGR00905       158 TTIAKLIPLFLFIIIGWFWFKLDLFTADFWGHDVPSLGSVFSQVKNTMLVTLWVFIGIEGAVVSSGRAKN  227 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCchhcccccCccCCCcccchHHHHHHHHHHHHHHHHhHHHHHHHHHHHhc
Confidence            54332222222222222111111 00010001011  112335667788899999 55444444444444

This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.

>PRK10644 arginine:agmatin antiporter; Provisional

Probab=98.63  E-value=1e-05  Score=74.39  Aligned_cols=213  Identities=14%  Similarity=0.045  Sum_probs=107.5

Q ss_pred             cccccchhHHHHHHHHhhhhhhhhhhhhHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhc---cccCCcccCcHHHHHH
Q 026491           14 HLEMLDSWFQVGFVLTTGINSAYVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKL---HEFGGKRHIRYRDLAG   90 (238)
Q Consensus        14 ~~~~~~s~~~a~~~l~~~~iG~GiLalP~a~~~~~G~~~G~i~l~~~~~~~~yt~~lL~~~---~~~~~~~~~sY~~l~~   90 (238)
                      +++||-+.+++....+++++|+|++.+|.. .++.|. ..+...++.++...-......+.   .++.|- ...|   ++
T Consensus         5 ~~~~~lg~~~~~~l~vg~~iGsGif~~~~~-~a~~g~-~~~~~~~i~~~~~l~~al~~aEL~s~~P~aGG-~y~~---~~   78 (445)
T PRK10644          5 ADAHKVGLIPVTLMVAGNIMGSGVFLLPAN-LASTGG-IAIYGWLVTIIGALGLSMVYAKMSSLDPSPGG-SYAY---AR   78 (445)
T ss_pred             ccCCCcCHHHHHHHHHhhHhhhHHHhhHHH-HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCC-hhHH---HH
Confidence            467788999999999999999999999998 777664 23344444444444444444443   343331 2223   77


Q ss_pred             HHcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhcCCChhhHHHHHHH
Q 026491           91 HIYGRRAYALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTMKLPYFIAIAGFVCALFAIGIPNLSALGVWLGV  170 (238)
Q Consensus        91 ~~~G~~~~~~v~~~~~i~~~g~~v~yli~~~~~l~~~~~~~~~~~~~~~~~~~iii~~~~~~lpl~~l~~l~~l~~~S~~  170 (238)
                      +.+||...+++.....+.......+......+.+..+++...     ......++...++..+-..-.+..|..+.+..+
T Consensus        79 ~~~g~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ln~~gvk~~~~i~~i  153 (445)
T PRK10644         79 RCFGPFLGYQTNVLYWLACWIGNIAMVVIGVGYLSYFFPILK-----DPLVLTITCVVVLWIFVLLNIVGPKMITRVQAV  153 (445)
T ss_pred             HHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC-----CcHHHHHHHHHHHHHHHHHHHhchHHHHHHHHH
Confidence            889999887776665554433333333333444443333111     011111111111110111123345665555555


Q ss_pred             HHHHHHHHHHHHHHHHhhcCCCCCCCcCCCCCCcchhhhhhHhHHHHHHHHh-ccCchhhhhhcccCCC
Q 026491          171 STVLSTIYIVIAIWLSVRDGLKNPARDYSIPGTTATKIFESIGACANLVFAF-NTGMLPEIQVREEFRS  238 (238)
Q Consensus       171 ~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~a~gi~~Faf-g~~v~p~I~~~M~~~~  238 (238)
                      .....+..+++.....+..... +......+......+..+..++....|+| |.......-+|+|||.
T Consensus       154 ~~~~~~i~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~aeE~k~P~  221 (445)
T PRK10644        154 ATVLALIPIVGIAVFGWFWFRG-ETYMAAWNVSGLGTFGAIQSTLNVTLWSFIGVESASVAAGVVKNPK  221 (445)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCc-hhccCCccccccchHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCcc
Confidence            4332222111111111111111 00000011011112234556788899999 5777788888999873

>PRK10238 aromatic amino acid transporter; Provisional

Probab=98.63  E-value=4.9e-06  Score=76.86  Aligned_cols=211  Identities=12%  Similarity=0.083  Sum_probs=121.0

Q ss_pred             cccccchhHHHHHHHHhhhhhhhhhhhhHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhc---cccCCcccCcHHHHHH
Q 026491           14 HLEMLDSWFQVGFVLTTGINSAYVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKL---HEFGGKRHIRYRDLAG   90 (238)
Q Consensus        14 ~~~~~~s~~~a~~~l~~~~iG~GiLalP~a~~~~~G~~~G~i~l~~~~~~~~yt~~lL~~~---~~~~~~~~~sY~~l~~   90 (238)
                      +.+|+-+.++...--+++++|+|++-.|..+.++.|- ..++..++.+++.+.....+.+.   .+..|    ++.+-++
T Consensus         9 ~l~r~L~~~~~~~i~ig~~IGsGif~~~g~~~~~~Gp-~~i~~~~i~gi~~~~v~~s~aEl~s~~P~aG----g~y~~~~   83 (456)
T PRK10238          9 QLKRGLKNRHIQLIALGGAIGTGLFLGSASVIQSAGP-GIILGYAIAGFIAFLIMRQLGEMVVEEPVAG----SFSHFAY   83 (456)
T ss_pred             hhhccCcHHHHHHHHhhccccchHHHhhHHHHHhcCc-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC----CHHHHHH
Confidence            3466779999999999999999999999876777775 45556666666666666666665   22222    4555567


Q ss_pred             HHcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhcCCChhhHHHHHHH
Q 026491           91 HIYGRRAYALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTMKLPYFIAIAGFVCALFAIGIPNLSALGVWLGV  170 (238)
Q Consensus        91 ~~~G~~~~~~v~~~~~i~~~g~~v~yli~~~~~l~~~~~~~~~~~~~~~~~~~iii~~~~~~lpl~~l~~l~~l~~~S~~  170 (238)
                      +.+||...+++.....+.....+.+.....++.++.+++     +  .....+.+++..++ ..+. ....|..+.++.+
T Consensus        84 ~~~g~~~gf~~Gw~~~~~~~~~~~~~~~~~~~~~~~~~p-----~--~~~~~~~~i~~~~~-~~lN-~~gv~~~~~~~~~  154 (456)
T PRK10238         84 KYWGSFAGFASGWNYWVLYVLVAMAELTAVGKYIQFWYP-----E--IPTWVSAAVFFVVI-NAIN-LTNVKVFGEMEFW  154 (456)
T ss_pred             HHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-----c--CcHHHHHHHHHHHH-HHHH-HHhHHHHHHHHHH
Confidence            789999999998888887776666666667776654432     1  11122222222221 1221 2234444444444


Q ss_pred             HHHHHHHHHHHHH--HH-HhhcCCCCCCCcC-CC-C--CCcchhhhhhHhHHHHHHHHh-ccCchhhhhhcccCCC
Q 026491          171 STVLSTIYIVIAI--WL-SVRDGLKNPARDY-SI-P--GTTATKIFESIGACANLVFAF-NTGMLPEIQVREEFRS  238 (238)
Q Consensus       171 ~~~~~~~~~~i~~--~~-~i~~~~~~~~~~~-~~-~--~~~~~~~~~~~~a~gi~~Faf-g~~v~p~I~~~M~~~~  238 (238)
                      ..+..+...++.+  .. .+..+...++... +. +  +..+..+.++..+++...|+| |.......-+|+|||.
T Consensus       155 ~~~iki~~i~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~af~G~e~~~~~aeE~knP~  230 (456)
T PRK10238        155 FAIIKVIAVVAMIIFGGWLLFSGNGGPQATVSNLWDQGGFLPHGFTGLVMMMAIIMFSFGGLELVGITAAEADNPE  230 (456)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCCCCCccccccCCCCCCccccHHHHHHHHHHHHHHhcCHHHHHHHHHhhcChh
Confidence            3322222111111  11 1122111111110 10 1  111112234556788899999 5788888899999874

>PRK11049 D-alanine/D-serine/glycine permease; Provisional

Probab=98.60  E-value=6.2e-06  Score=76.44  Aligned_cols=213  Identities=12%  Similarity=0.044  Sum_probs=118.4

Q ss_pred             ccccchhHHHHHHHHhhhhhhhhhhhhHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhccccCCcccCcHHHHHHHHcC
Q 026491           15 LEMLDSWFQVGFVLTTGINSAYVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKLHEFGGKRHIRYRDLAGHIYG   94 (238)
Q Consensus        15 ~~~~~s~~~a~~~l~~~~iG~GiLalP~a~~~~~G~~~G~i~l~~~~~~~~yt~~lL~~~~~~~~~~~~sY~~l~~~~~G   94 (238)
                      .+|+-+.++...-.+.+++|+|++-.|..+.++.|. ..++..++.+++.+.....+.+.... +.+..++.+.+++.+|
T Consensus        18 l~r~l~~~~~~~i~vG~~IGsGif~~~g~~~~~aGp-~~i~~~~i~~i~~~~~~~s~aEl~s~-~~~~~~~~~ya~~~~g   95 (469)
T PRK11049         18 LRRNLTNRHIQLIAIGGAIGTGLFMGSGKTISLAGP-SIIFVYMIIGFMLFFVMRAMGELLLS-NLEYKSFSDFASDLLG   95 (469)
T ss_pred             hhccCcHHHHHHHHHhhHHHhHHHHHhhHHHhhcCc-HHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCCcHHHHHHHHhC
Confidence            455678999999999999999999998865888887 45666667777666666666555321 1123356788999999


Q ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhcCCChhhHHHHHHHHHHH
Q 026491           95 RRAYALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTMKLPYFIAIAGFVCALFAIGIPNLSALGVWLGVSTVL  174 (238)
Q Consensus        95 ~~~~~~v~~~~~i~~~g~~v~yli~~~~~l~~~~~~~~~~~~~~~~~~~iii~~~~~~lpl~~l~~l~~l~~~S~~~~~~  174 (238)
                      |...+++.....+...-...+.....+..+..++     ++  .....+.+++..++ ..+ -....|..+.+..+....
T Consensus        96 ~~~gf~~gW~~~~~~~~~~~a~~~a~~~~~~~~~-----p~--~~~~~~~~~~~~~~-~~i-N~~g~~~~~~i~~~~~~~  166 (469)
T PRK11049         96 PWAGYFTGWTYWFCWVVTGIADVVAITAYAQFWF-----PD--LSDWVASLAVVLLL-LSL-NLATVKMFGEMEFWFAMI  166 (469)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----CC--CcHHHHHHHHHHHH-HHH-HHHhHHHHHHHHHHHHHH
Confidence            9998888888776654333444444554444332     21  11112222211111 122 223445555554443322


Q ss_pred             HHHHHHH--HHHHH-hhcCCCCCCCc-CCC----C--CCcchhhhhhHhHHHHHHHHh-ccCchhhhhhcccCCC
Q 026491          175 STIYIVI--AIWLS-VRDGLKNPARD-YSI----P--GTTATKIFESIGACANLVFAF-NTGMLPEIQVREEFRS  238 (238)
Q Consensus       175 ~~~~~~i--~~~~~-i~~~~~~~~~~-~~~----~--~~~~~~~~~~~~a~gi~~Faf-g~~v~p~I~~~M~~~~  238 (238)
                      -+...++  +.+.. ...+...++.+ ...    +  +..+..+.+++.++....|+| |.......-+|+|||.
T Consensus       167 kl~~l~~~ii~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~~~~~~~~~~af~G~e~~~~~a~E~knP~  241 (469)
T PRK11049        167 KIVAIVALIVVGLVMVAMHFQSPTGVEASFAHLWNDGGMFPKGLSGFFAGFQIAVFAFVGIELVGTTAAETKDPE  241 (469)
T ss_pred             HHHHHHHHHHHHHHHHHcCCCCCCCCCCcccccCCCCCCCcccHHHHHHHHHHHHHHHhcHHHHHHHHHHhcCHh
Confidence            2111111  11111 11111111100 001    0  110112335778899999999 5788888899999873

>TIGR00912 2A0309 spore germination protein (amino acid permease)

Probab=98.58  E-value=4.9e-06  Score=74.26  Aligned_cols=146  Identities=14%  Similarity=0.119  Sum_probs=92.9

Q ss_pred             cchhHHHHHHHHhhhhhhhhhhhhHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhccccCCcccCcHHHHHHHHcCccc
Q 026491           18 LDSWFQVGFVLTTGINSAYVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKLHEFGGKRHIRYRDLAGHIYGRRA   97 (238)
Q Consensus        18 ~~s~~~a~~~l~~~~iG~GiLalP~a~~~~~G~~~G~i~l~~~~~~~~yt~~lL~~~~~~~~~~~~sY~~l~~~~~G~~~   97 (238)
                      |-|.+|..+-+..+.+|+|++.+|.. .++.+--.+.+..++.+++......+..+...+..  ..+..|..++.+||+.
T Consensus         2 ~is~~q~~~l~~~~~iG~gil~~P~~-~~~~a~~~~wi~~ll~~~~~~~~~~~~~~l~~~~p--~~~~~~~~~~~~Gk~~   78 (359)
T TIGR00912         2 KISSKQLIFLISSTMIGSGLLTLPAL-VSQSAGQDGWISIILGGLIIIFLLCLMIKIMSKFP--EKNFSEILSKYLGKIL   78 (359)
T ss_pred             cCcHHHHHHHHHHHHHHHHHHhhhHH-HHhccCCCeeHHHHHHHHHHHHHHHHHHHHHHHCC--CCCHHHHHHHHhhHHH
Confidence            56788999999999999999999997 54432234556667777777777777776644322  2368899999999998


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhcCCChhhHHHHHHHHHHH
Q 026491           98 YALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTMKLPYFIAIAGFVCALFAIGIPNLSALGVWLGVSTVL  174 (238)
Q Consensus        98 ~~~v~~~~~i~~~g~~v~yli~~~~~l~~~~~~~~~~~~~~~~~~~iii~~~~~~lpl~~l~~l~~l~~~S~~~~~~  174 (238)
                      .+++........+..+..-+-..+|.++...   . ++    +..|.+....+++.-....+.++.++.++.+-...
T Consensus        79 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---l-~~----tp~~~~~l~~l~~~~~~~~~Gi~~i~r~~~i~~~~  147 (359)
T TIGR00912        79 GRLLSILFILYFFLIAAYLIRIFADFIKTYL---L-PR----TPIIVIIILIIIVSIYIVRKGIEVLLRTAEILLII  147 (359)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---c-CC----CCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHH
Confidence            8888877776666665555555566554332   1 11    12333322222211222335777777777666543

This model describes spore germination protein GerKB and paralogs from Bacillus subtilis, Clostridium tetani, and other known or predicted endospore-forming members of the Firmicutes (low-GC Gram positive bacteria). Members show some similarity to amino acid permeases.

>TIGR00909 2A0306 amino acid transporter

Probab=98.56  E-value=8.6e-06  Score=74.34  Aligned_cols=213  Identities=11%  Similarity=-0.045  Sum_probs=121.2

Q ss_pred             cccchhHHHHHHHHhhhhhhhhhhhhHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhccccCCcccCcHHHHHHHHcCc
Q 026491           16 EMLDSWFQVGFVLTTGINSAYVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKLHEFGGKRHIRYRDLAGHIYGR   95 (238)
Q Consensus        16 ~~~~s~~~a~~~l~~~~iG~GiLalP~a~~~~~G~~~G~i~l~~~~~~~~yt~~lL~~~~~~~~~~~~sY~~l~~~~~G~   95 (238)
                      +|+-+.++...-.+++++|+|++.+|..+.+..|. ...+..++.+++.........+...+..+ .-..-+-.++.+||
T Consensus         2 ~r~l~~~~~~~~~i~~~ig~gi~~~~~~~~~~~G~-~~~l~~li~~~~~~~~a~~~~el~~~~p~-~Gg~y~~~~~~~G~   79 (429)
T TIGR00909         2 SRELGLFDLTMLGIGAMIGTGIFVVTGIAAGKAGP-AVILSFVLAGLTALFIALVYAELAAMLPV-AGSPYTYAYEAMGE   79 (429)
T ss_pred             CccccHHHHHHHHHhhhhcchHHHhHHHHHHHcCC-HHHHHHHHHHHHHHHHHHHHHHHHhhcCC-CCcceeeHHHHhCc
Confidence            57789999999999999999999999763555554 34555666666666666666555221111 11233455677999


Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCCCC----Cchh--hH-HHHHHHHHHHHhcCCChhhHHH
Q 026491           96 RAYALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWK--DDHTM----KLPY--FI-AIAGFVCALFAIGIPNLSALGV  166 (238)
Q Consensus        96 ~~~~~v~~~~~i~~~g~~v~yli~~~~~l~~~~~~~~~--~~~~~----~~~~--~i-ii~~~~~~lpl~~l~~l~~l~~  166 (238)
                      +..++......+.....+..+....++.++.+++....  ++...    +...  +. +++..++  -..-.+..|..+.
T Consensus        80 ~~g~~~gw~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~l~~~g~~~~~~  157 (429)
T TIGR00909        80 LTAFIIGWSLWLEYGVAVAAVAVGWGGYLQEFLPGVGLDLPAVLTAKPGNGGVFNLPALLIVLFL--TYILYLGAKESGK  157 (429)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCchhhhcCCcccccccHHHHHHHHHH--HHHHHhCcHHHHH
Confidence            99888888877777667777777788888777653210  11000    0001  11 1111111  2223445677777


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcCCCCCCcchhhhhhHhHHHHHHHHh-ccCchhhhhhcccCC
Q 026491          167 WLGVSTVLSTIYIVIAIWLSVRDGLKNPARDYSIPGTTATKIFESIGACANLVFAF-NTGMLPEIQVREEFR  237 (238)
Q Consensus       167 ~S~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~a~gi~~Faf-g~~v~p~I~~~M~~~  237 (238)
                      ++.+.....+...++.+...+.+... +  +.+  ........++..++....|+| |........+|+|||
T Consensus       158 ~~~v~~~~~i~~l~~~~~~~~~~~~~-~--~~~--~~~~~~~~~~~~~~~~~~~af~G~e~~~~~~~E~~~p  224 (429)
T TIGR00909       158 VNDILVVLKVAALLLFAALGAIHFAS-N--NYT--PFMPMGFGGVGAATALVFFAFIGFEAISTAAEEVKNP  224 (429)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHhhCcH-H--hcC--CCCCCcHHHHHHHHHHHHHHHhhHHHHHhhHHhccCc
Confidence            66666544333332222223322211 1  111  111112345677888999999 666666666777775

>PRK10580 proY putative proline-specific permease; Provisional

Probab=98.55  E-value=1.9e-05  Score=72.95  Aligned_cols=215  Identities=8%  Similarity=-0.001  Sum_probs=116.3

Q ss_pred             ccccccchhHHHHHHHHhhhhhhhhhhhhHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhccccCCcccCcHHHHHHHH
Q 026491           13 FHLEMLDSWFQVGFVLTTGINSAYVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKLHEFGGKRHIRYRDLAGHI   92 (238)
Q Consensus        13 ~~~~~~~s~~~a~~~l~~~~iG~GiLalP~a~~~~~G~~~G~i~l~~~~~~~~yt~~lL~~~~~~~~~~~~sY~~l~~~~   92 (238)
                      .+.+|+-+.++...-.+.+++|+|++.+|..+.+..|- ..++..++.+++.+.....+.+......+ .-...+.+++.
T Consensus         5 ~~l~r~L~~~~~~~i~vg~~IG~Gif~~~g~~~~~aG~-~~~l~~~i~~i~~~~~a~~~aEl~s~~P~-~Gg~y~y~~~~   82 (457)
T PRK10580          5 NKLKRGLSTRHIRFMALGSAIGTGLFYGSADAIKMAGP-SVLLAYIIGGVAAYIIMRALGEMSVHNPA-ASSFSRYAQEN   82 (457)
T ss_pred             ccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-HHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCCHHHHHHHH
Confidence            34567779999999999999999999999876777886 46777777777777777777776321111 11344466888


Q ss_pred             cCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhcCCChhhHHHHHHHHH
Q 026491           93 YGRRAYALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTMKLPYFIAIAGFVCALFAIGIPNLSALGVWLGVST  172 (238)
Q Consensus        93 ~G~~~~~~v~~~~~i~~~g~~v~yli~~~~~l~~~~~~~~~~~~~~~~~~~iii~~~~~~lpl~~l~~l~~l~~~S~~~~  172 (238)
                      +||...+++.....+.....+.......+..++.++     ++  .....|.+...++. ..+ -.+..|..+.+..+..
T Consensus        83 ~G~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~-----~~--~~~~~~~~~~~~l~-~~l-n~~gv~~~~~~~~~~~  153 (457)
T PRK10580         83 LGPLAGYITGWTYCFEILIVAIADVTAFGIYMGVWF-----PT--VPHWIWVLSVVLII-CAV-NLMSVKVFGELEFWFS  153 (457)
T ss_pred             cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----CC--CChHHHHHHHHHHH-HHH-HHccchhHHHHHHHHH
Confidence            999988888777665443333333333444433322     11  11223333322222 222 2334454444443322


Q ss_pred             HHHHHHH--HHHHH--HHhhcC-CC-CCC-CcCCCCC--CcchhhhhhHhHHHHHHHHh-ccCchhhhhhcccCCC
Q 026491          173 VLSTIYI--VIAIW--LSVRDG-LK-NPA-RDYSIPG--TTATKIFESIGACANLVFAF-NTGMLPEIQVREEFRS  238 (238)
Q Consensus       173 ~~~~~~~--~i~~~--~~i~~~-~~-~~~-~~~~~~~--~~~~~~~~~~~a~gi~~Faf-g~~v~p~I~~~M~~~~  238 (238)
                      +..+...  +++..  ..+... .. ++. .+...++  .....+.+++.++....|+| |........+|+|||.
T Consensus       154 ~~~~~~l~~~ii~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~fsf~G~e~~~~~a~E~knP~  229 (457)
T PRK10580        154 FFKVATIIIMIVAGIGIIIWGIGNGGQPTGIHNLWSNGGFFSNGWLGMVMSLQMVMFAYGGIEIIGITAGEAKDPE  229 (457)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCCCCCCCCCccccCCCCCCCCcchHHHHHHHHHHHHHHhCHHHHHHHHHHhcChh
Confidence            1111111  11111  111111 00 110 0111111  00112335677888999999 5777788888888873

>PRK11387 S-methylmethionine transporter; Provisional

Probab=98.52  E-value=1.7e-05  Score=73.49  Aligned_cols=103  Identities=12%  Similarity=0.087  Sum_probs=70.0

Q ss_pred             ccccchhHHHHHHHHhhhhhhhhhhhhHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhc---cccCCcccCcHHHHHHH
Q 026491           15 LEMLDSWFQVGFVLTTGINSAYVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKL---HEFGGKRHIRYRDLAGH   91 (238)
Q Consensus        15 ~~~~~s~~~a~~~l~~~~iG~GiLalP~a~~~~~G~~~G~i~l~~~~~~~~yt~~lL~~~---~~~~~~~~~sY~~l~~~   91 (238)
                      .+|+-+.++...-.+..++|+|+...|..+.+..|-...++..++.+++.+.....+.+.   +++.|    .+-+-+++
T Consensus        12 l~r~L~~~~~~~l~ig~~IG~Gif~~~g~~~~~~G~~~~~l~~~i~~~~~~~~~~~~aELas~~P~aG----G~y~y~~~   87 (471)
T PRK11387         12 FKRTMKVRHLVMLSLGGVIGTGLFFNTGYIISTTGAAGTLLAYLIGALVVYLVMQCLGELSVAMPETG----AFHVYAAR   87 (471)
T ss_pred             hhhcCcHHHHHHHHHHhhhhhHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC----CHHHHHHH
Confidence            466779999999999999999999999875677775334556666666666666665555   33333    35567778


Q ss_pred             HcCccchhHHHHHHHHHHHHHHHHHHHHHH
Q 026491           92 IYGRRAYALTWGLQYVNLFMINTGYIILAG  121 (238)
Q Consensus        92 ~~G~~~~~~v~~~~~i~~~g~~v~yli~~~  121 (238)
                      .+||....++.....+.....+..-....+
T Consensus        88 ~~g~~~gf~~gw~~~~~~~~~~~~~~~~~~  117 (471)
T PRK11387         88 YLGPATGYTVAWLYWLTWTVALGSSLTAAG  117 (471)
T ss_pred             hcChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            899998777777666655444333333333

>PRK11021 putative transporter; Provisional

Probab=98.50  E-value=1.8e-05  Score=71.98  Aligned_cols=202  Identities=14%  Similarity=0.117  Sum_probs=108.2

Q ss_pred             hhHHHHHHHHhhhhhhhhhhhhHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhc---cccCCcccCcHHHHHHHHcCcc
Q 026491           20 SWFQVGFVLTTGINSAYVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKL---HEFGGKRHIRYRDLAGHIYGRR   96 (238)
Q Consensus        20 s~~~a~~~l~~~~iG~GiLalP~a~~~~~G~~~G~i~l~~~~~~~~yt~~lL~~~---~~~~~~~~~sY~~l~~~~~G~~   96 (238)
                      ++|++..-.+++++|+|++.+|..+.+..|- ..++..++.+++.........+.   .++.|    ....-+++.+||+
T Consensus         2 g~~~~~~l~~g~~IGsGif~~~g~~~~~aG~-~~~~~~~i~~~~~~~~al~~aEl~s~~P~aG----G~y~y~~~~~G~~   76 (410)
T PRK11021          2 GLWQGIGLLSTSLLGTGVFAVPALAALVAGN-NSLWAWPLLILLIFPIAIVFARLGRHFPHAG----GPAHFVGMAFGPR   76 (410)
T ss_pred             cHHHHHHHHHHHHHhhHHHHhHHHHHHhcCc-hHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC----CHHHhHHHHhCch
Confidence            5788999999999999999999986777774 45666666666666666666665   33333    3445567789999


Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHH
Q 026491           97 AYALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTMKLPYFIAIAGFVCALFAIGIPNLSALGVWLGVSTVLST  176 (238)
Q Consensus        97 ~~~~v~~~~~i~~~g~~v~yli~~~~~l~~~~~~~~~~~~~~~~~~~iii~~~~~~lpl~~l~~l~~l~~~S~~~~~~~~  176 (238)
                      ..++......+.......+.....++.+...++     .....  .+.+...+..++-+.-.+..|..+.+..+..+.. 
T Consensus        77 ~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~--~~~~~~~~~~~~~~ln~~Gv~~~~~~~~~~~~~~-  148 (410)
T PRK11021         77 LGRVTGWLFLSVIPVGLPAALQIAAGFGQALFG-----WSSWQ--LLLAELLTLALLWLLNLRGASSSANLQTVIALLI-  148 (410)
T ss_pred             hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcC-----CCCch--HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH-
Confidence            887777666543322222233333333333321     11111  1221111111111222344555555444432211 


Q ss_pred             HHHHHHHHHHhhcCCCCCCCcCCCCCCcchhhhhhHhHHHHHHHHh-ccCchhhhhhcccCCC
Q 026491          177 IYIVIAIWLSVRDGLKNPARDYSIPGTTATKIFESIGACANLVFAF-NTGMLPEIQVREEFRS  238 (238)
Q Consensus       177 ~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~a~gi~~Faf-g~~v~p~I~~~M~~~~  238 (238)
                        ..+ +...+..+..++. +...++....++.+++.++....|+| |.......-+|+|||.
T Consensus       149 --~~i-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~  207 (410)
T PRK11021        149 --VAL-VVAIWWAGDIKPA-DIPFPAPGSIEWSGLFAALGVMFWCFVGIEAFAHLASEFKNPE  207 (410)
T ss_pred             --HHH-HHHHHHHcCCchh-cCCCCCCCCccHHHHHHHHHHHHHHHhcHHHHHhhHHhccCcc
Confidence              111 1111112211111 11111111123446778899999999 5888888899999873

>PRK10746 putative transport protein YifK; Provisional

Probab=98.50  E-value=3e-05  Score=71.81  Aligned_cols=214  Identities=12%  Similarity=-0.041  Sum_probs=120.4

Q ss_pred             CccccccchhHHHHHHHHhhhhhhhhhhhhHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhccc-cCCcccCcHHHHHH
Q 026491           12 FFHLEMLDSWFQVGFVLTTGINSAYVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKLHE-FGGKRHIRYRDLAG   90 (238)
Q Consensus        12 ~~~~~~~~s~~~a~~~l~~~~iG~GiLalP~a~~~~~G~~~G~i~l~~~~~~~~yt~~lL~~~~~-~~~~~~~sY~~l~~   90 (238)
                      +++.+|+-+.++...--+.+++|+|++-.|..+.+.+|. ..++..++.+++.+.....+.+... .+.  .-++.+-++
T Consensus         5 ~~~l~r~L~~~~~~~i~ig~~IGtGlf~~~g~~l~~aGp-~~~l~~~i~g~~~~~v~~~~aEl~~~~P~--sGg~~~y~~   81 (461)
T PRK10746          5 KPELQRGLEARHIELIALGGTIGVGLFMGAASTLKWAGP-SVLLAYIIAGLFVFFIMRSMGEMLFLEPV--TGSFAVYAH   81 (461)
T ss_pred             chHHhccCcHHHHHHHHHHhhhhhhHHHHhHHHHHhcCh-HHHHHHHHHHHHHHHHHHHHHHHHHhcCC--CCCHHHHHH
Confidence            344667779999999999999999999999876888886 4556666777777777777766522 221  225777888


Q ss_pred             HHcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhcCCChhhHHHHHHH
Q 026491           91 HIYGRRAYALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTMKLPYFIAIAGFVCALFAIGIPNLSALGVWLGV  170 (238)
Q Consensus        91 ~~~G~~~~~~v~~~~~i~~~g~~v~yli~~~~~l~~~~~~~~~~~~~~~~~~~iii~~~~~~lpl~~l~~l~~l~~~S~~  170 (238)
                      +.+||+...++.....+.....+...+...+..++.+++     +  .....|..+...++ ..+ -.+..|..+.+..+
T Consensus        82 ~~~g~~~Gf~~gw~~~~~~~~~~~~~~~a~~~~l~~~~p-----~--~~~~~~~~~~~~~~-~~l-N~~gv~~~~~~e~~  152 (461)
T PRK10746         82 RYMSPFFGYLTAWSYWFMWMAVGISEITAIGVYVQFWFP-----E--MAQWIPALIAVALV-ALA-NLAAVRLYGEIEFW  152 (461)
T ss_pred             HHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC-----C--CchHHHHHHHHHHH-HHH-HHHhHHHHHHHHHH
Confidence            899999888888777776655555555555555554432     1  22223333322222 122 12233333333222


Q ss_pred             ----HHHHHHHHHHHHHHHHhhc-CCCCCCC---cCCCC-CCcchhhhhhHhHHHHHHHHh-ccCchhhhhhcccCC
Q 026491          171 ----STVLSTIYIVIAIWLSVRD-GLKNPAR---DYSIP-GTTATKIFESIGACANLVFAF-NTGMLPEIQVREEFR  237 (238)
Q Consensus       171 ----~~~~~~~~~~i~~~~~i~~-~~~~~~~---~~~~~-~~~~~~~~~~~~a~gi~~Faf-g~~v~p~I~~~M~~~  237 (238)
                          -++..+...++.+...... +..++..   +...+ +.....+.++..++....|+| |.......-+|+|||
T Consensus       153 ~~~~ki~~i~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~g~~~~~~~~~faf~G~e~v~~~a~E~knP  229 (461)
T PRK10746        153 FAMIKVTTIIVMIVIGLGVIFFGFGNGGQSIGFSNLTEHGGFFAGGWKGFLTALCIVVASYQGVELIGITAGEAKNP  229 (461)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCccccccCCCCcCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHhcCh
Confidence                2111111111111111111 1110100   00000 011112345668899999999 577788888888887

>TIGR03810 arg_ornith_anti arginine/ornithine antiporter

Probab=98.50  E-value=3.2e-05  Score=71.62  Aligned_cols=112  Identities=12%  Similarity=0.006  Sum_probs=70.6

Q ss_pred             ccchhHHHHHHHHhhhhhhhhhhhhHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhccccCCcccC-cHHHHHHHHcCc
Q 026491           17 MLDSWFQVGFVLTTGINSAYVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKLHEFGGKRHI-RYRDLAGHIYGR   95 (238)
Q Consensus        17 ~~~s~~~a~~~l~~~~iG~GiLalP~a~~~~~G~~~G~i~l~~~~~~~~yt~~lL~~~~~~~~~~~~-sY~~l~~~~~G~   95 (238)
                      ||-+.++.....+.+++|+|++.+|..+.+..|....++..++.++..........+...+..+ .. ..-+-+++.|||
T Consensus         1 ~~lgl~~~~~l~vg~~IGsGif~~~~~~~~~ag~~~~l~~w~i~~~~~~~~al~~aeL~s~~P~-~gGG~y~y~~~~fG~   79 (468)
T TIGR03810         1 KKLGLGALTALVVGSMIGSGIFSLPSDMAAGAAAGAVLIGWVITGVGMLALAFSFQNLANKKPE-LDGGVYSYAKAGFGP   79 (468)
T ss_pred             CCCCHHHHHHHHHHhHHhhHHHHhHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC-CCCChhhhHHhHcCc
Confidence            4668899999999999999999999974556664333444566666665555555554221111 11 233447888999


Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026491           96 RAYALTWGLQYVNLFMINTGYIILAGQALKAAFV  129 (238)
Q Consensus        96 ~~~~~v~~~~~i~~~g~~v~yli~~~~~l~~~~~  129 (238)
                      ....++.....+...-...++.....+.+..+++
T Consensus        80 ~~gf~~gw~~w~~~~~~~~~~~~~~~~~~~~~~p  113 (468)
T TIGR03810        80 FMGFISAWGYWLSAWLGNVAYATLLFSTLGYFFP  113 (468)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            9888777776655443444555555555544443

Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.

>PRK10249 phenylalanine transporter; Provisional

Probab=98.48  E-value=2e-05  Score=72.79  Aligned_cols=210  Identities=14%  Similarity=0.019  Sum_probs=115.0

Q ss_pred             cccchhHHHHHHHHhhhhhhhhhhhhHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhccccCCcccCcHHHHHHHHcCc
Q 026491           16 EMLDSWFQVGFVLTTGINSAYVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKLHEFGGKRHIRYRDLAGHIYGR   95 (238)
Q Consensus        16 ~~~~s~~~a~~~l~~~~iG~GiLalP~a~~~~~G~~~G~i~l~~~~~~~~yt~~lL~~~~~~~~~~~~sY~~l~~~~~G~   95 (238)
                      +|+-+.++...-.+..++|+|++..|..+.++.|- ..++..++.+++.+.....+.+......+ .-+..+.+++.+||
T Consensus        20 ~r~l~~~~~~~i~ig~~IGsGif~~~g~~~~~aGp-~~~l~~li~~~~~~~~~~~~aEl~~~~P~-~Gg~~~y~~~~~g~   97 (458)
T PRK10249         20 HRGLHNRHIQLIALGGAIGTGLFLGIGPAIQMAGP-AVLLGYGVAGIIAFLIMRQLGEMVVEEPV-SGSFAHFAYKYWGP   97 (458)
T ss_pred             hccCcHhHhhhhhhhcccchhHHHHHHHHHHhcCc-HHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CCCHHHHHHHHhCh
Confidence            45568899999999999999999999875777786 46667777777777777777766321111 12566678899999


Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhcCCChhhHHHHHHHHHH--
Q 026491           96 RAYALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTMKLPYFIAIAGFVCALFAIGIPNLSALGVWLGVSTV--  173 (238)
Q Consensus        96 ~~~~~v~~~~~i~~~g~~v~yli~~~~~l~~~~~~~~~~~~~~~~~~~iii~~~~~~lpl~~l~~l~~l~~~S~~~~~--  173 (238)
                      ...+++.....+.......+.....+..++.++     ++  .....+.+++..+. ..+ -.+..|..+.+..+..+  
T Consensus        98 ~~gf~~gw~~~~~~~~~~~~~~~a~~~~~~~~~-----~~--~~~~~~~~~~~~l~-~~l-N~~gv~~~~~i~~~~~~ik  168 (458)
T PRK10249         98 FAGFLSGWNYWVMFVLVGMAELTAAGIYMQYWF-----PD--VPTWIWAAAFFIII-NAV-NLVNVRLYGETEFWFALIK  168 (458)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-----Cc--CcHHHHHHHHHHHH-HHH-HHhcchhhhhHHHHHHHHH
Confidence            988888777666554444444444444444332     11  12122222222221 122 23344444443332221  


Q ss_pred             -HHHHHHHHHHHH-HhhcCCCCCCCcCC--CCC--CcchhhhhhHhHHHHHHHHh-ccCchhhhhhcccCC
Q 026491          174 -LSTIYIVIAIWL-SVRDGLKNPARDYS--IPG--TTATKIFESIGACANLVFAF-NTGMLPEIQVREEFR  237 (238)
Q Consensus       174 -~~~~~~~i~~~~-~i~~~~~~~~~~~~--~~~--~~~~~~~~~~~a~gi~~Faf-g~~v~p~I~~~M~~~  237 (238)
                       ..+... +++.. .+..+.++++.+.+  .++  .....+.++..++....|+| |.......-+|+|||
T Consensus       169 v~~i~~~-i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~af~G~e~~~~~a~E~~~P  238 (458)
T PRK10249        169 VLAIIGM-IGFGLWLLFSGHGGEKASIDNLWRYGGFFATGWNGLILSLAVIMFSFGGLELIGITAAEARDP  238 (458)
T ss_pred             HHHHHHH-HHHHHHHHHcCCCCCCCChhhccCCCCCCCCcHHHHHHHHHHHHHHHcCHHHHHHHHHHhcCH
Confidence             111111 11111 11122111111100  000  00112335678889999999 577888888999887

>TIGR00908 2A0305 ethanolamine permease

Probab=98.41  E-value=4.9e-05  Score=69.78  Aligned_cols=211  Identities=12%  Similarity=-0.009  Sum_probs=111.0

Q ss_pred             ccccccchhHHHHHHHHhhhhhhhhhhhhHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhc---cccCCcccCcHHHHH
Q 026491           13 FHLEMLDSWFQVGFVLTTGINSAYVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKL---HEFGGKRHIRYRDLA   89 (238)
Q Consensus        13 ~~~~~~~s~~~a~~~l~~~~iG~GiLalP~a~~~~~G~~~G~i~l~~~~~~~~yt~~lL~~~---~~~~~~~~~sY~~l~   89 (238)
                      .+.+|+-+.++...-.+..++|....+.+.+ .++.|+..-++..++.+++.........+.   .++.|    ..-.-+
T Consensus         3 ~~l~r~l~~~~~~~l~~~~~igg~~~~~~~~-~~~~G~~~~~~~~~i~~~~~~~~a~~~aEl~s~~P~~G----g~y~~~   77 (442)
T TIGR00908         3 RQLKKTLATWQLWGIGVGYVISGDYAGWNFG-LAQGGWGGFVVATLLVATMYLTFCFSLAELSTMIPTAG----GGYGFA   77 (442)
T ss_pred             chhhccCCHHHHHHhHHHHHhhccchhHhhH-HHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC----CHHHHH
Confidence            4456777888888777777887444555777 888898533344444444444444444443   33333    344466


Q ss_pred             HHHcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhcCCChhhHHHHHH
Q 026491           90 GHIYGRRAYALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTMKLPYFIAIAGFVCALFAIGIPNLSALGVWLG  169 (238)
Q Consensus        90 ~~~~G~~~~~~v~~~~~i~~~g~~v~yli~~~~~l~~~~~~~~~~~~~~~~~~~iii~~~~~~lpl~~l~~l~~l~~~S~  169 (238)
                      ++.+||...+++.....+.......++....++.+..+++..       ....+.+++..+. ..+ -.+..|..+.+..
T Consensus        78 ~~~~G~~~gf~~gw~~~~~~~~~~~~~a~~~~~~l~~~~p~~-------~~~~~~~~~~~~~-~~l-n~~g~~~~~~i~~  148 (442)
T TIGR00908        78 RRAFGPWGGFLAGTAILIEFAFAPPAIACFIGAYCESLFPVG-------PGWLAALVFYIVF-IGI-NILGVGEAAKLEF  148 (442)
T ss_pred             HHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-------chhHHHHHHHHHH-HHH-HHHHHHHHHhHHH
Confidence            788999988888877777666666677777787776655311       1111121111111 111 2233444444444


Q ss_pred             HHHHHHHHHHHHHHHHHhhcCCCCCC-CcCCC---CCCcchhhhhhHhHHHHHHHHh-ccCchhhhhhcccCCC
Q 026491          170 VSTVLSTIYIVIAIWLSVRDGLKNPA-RDYSI---PGTTATKIFESIGACANLVFAF-NTGMLPEIQVREEFRS  238 (238)
Q Consensus       170 ~~~~~~~~~~~i~~~~~i~~~~~~~~-~~~~~---~~~~~~~~~~~~~a~gi~~Faf-g~~v~p~I~~~M~~~~  238 (238)
                      +..+..+...++.+... ....+..+ ...+.   .+.....+.+++.++....|+| |.......-+|+|||.
T Consensus       149 ~~~~~~~~~l~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~aeE~k~P~  221 (442)
T TIGR00908       149 VVTAVAIIALGVFIGAM-VPHFDSANLFNGPQTGASSFLPGAYVGVFAAIPFAIWFFLAVEGVAMAAEETKNPK  221 (442)
T ss_pred             HHHHHHHHHHHHHHHHH-hccCCHHHhccCCccCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence            33222221111111111 11111000 00000   0111112345677888889999 5777788888999873

The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily.

>KOG3832 consensus Predicted amino acid transporter [General function prediction only]

Probab=98.38  E-value=6e-06  Score=67.64  Aligned_cols=203  Identities=15%  Similarity=0.137  Sum_probs=114.5

Q ss_pred             HHHHhhhhhhhhhhhhHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcc------------c--c--C-----------
Q 026491           26 FVLTTGINSAYVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKLH------------E--F--G-----------   78 (238)
Q Consensus        26 ~~l~~~~iG~GiLalP~a~~~~~G~~~G~i~l~~~~~~~~yt~~lL~~~~------------~--~--~-----------   78 (238)
                      .-+.|-++|+|.|+||.| |+.+||...+.+++..+++++-+....++..            +  +  .           
T Consensus        19 lymfnlivgtgalalpka-fatagwllsi~ll~fl~fmsfmaatfviealaaanaqlhwkrle~~keeeddd~stasd~d   97 (319)
T KOG3832|consen   19 LYMFNLIVGTGALALPKA-FATAGWLLSITLLTFLAFMSFMAATFVIEALAAANAQLHWKRLEKKKEEEDDDESTASDDD   97 (319)
T ss_pred             hhhhhhhhccccccchHh-HhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhccccccccCCCc
Confidence            346788999999999999 9999999999999999999988877666541            0  0  0           


Q ss_pred             -----C-----ccc------------------CcHHHHHHHHcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026491           79 -----G-----KRH------------------IRYRDLAGHIYGRRAYALTWGLQYVNLFMINTGYIILAGQALKAAFVL  130 (238)
Q Consensus        79 -----~-----~~~------------------~sY~~l~~~~~G~~~~~~v~~~~~i~~~g~~v~yli~~~~~l~~~~~~  130 (238)
                           |     ||.                  ..-.|++...|.|.+-.+.-++++++++|-...|--..-.+..++...
T Consensus        98 vli~d~yeraekrpilsvqrrgspnpfeisdkvemgemasmffnkvgln~fyf~iiiylfgdlaiyaaavpfs~m~itca  177 (319)
T KOG3832|consen   98 VLIADGYERAEKRPILSVQRRGSPNPFEISDKVEMGEMASMFFNKVGLNFFYFAIIIYLFGDLAIYAAAVPFSAMNITCA  177 (319)
T ss_pred             EEEecCchhcccCCcceecccCCCCcceeehhhhHHHHHHHHHHhhhHHHHHHHHHHHHhhhhhhhhhcCchHhhhhhhh
Confidence                 0     000                  013355555566777667777888888888777766555555555443


Q ss_pred             HhcCC---------C-----CC--------CchhhHHHHHHHHHHHHhcCC--ChhhHHHHHHHHHHHHHHHHHHHHHHH
Q 026491          131 FWKDD---------H-----TM--------KLPYFIAIAGFVCALFAIGIP--NLSALGVWLGVSTVLSTIYIVIAIWLS  186 (238)
Q Consensus       131 ~~~~~---------~-----~~--------~~~~~iii~~~~~~lpl~~l~--~l~~l~~~S~~~~~~~~~~~~i~~~~~  186 (238)
                      ..+.+         +     .|        -.|.|.+|+.+++.+|..+..  +-|++..+..+.-...+.     .+.+
T Consensus       178 a~g~dscgvead~~~~dtdrcwg~ilrrmdayr~flaiftlll~lpftf~diqktk~iqiltslmrw~~~~-----~g~~  252 (319)
T KOG3832|consen  178 AIGADSCGVEADPCHEDTDRCWGEILRRMDAYRFFLAIFTLLLCLPFTFADIQKTKHIQILTSLMRWAAFI-----LGIS  252 (319)
T ss_pred             hcCCccccccCCcccccccccchHHHhhhHHHHHHHHHHHHHHcCceeEeccccchhHHHHHHHHHHHhcc-----chhh
Confidence            22211         0     01        125677777766556665432  333333333222221110     1111


Q ss_pred             hhcCCCCCCCcCCCCCCcchhhhhhHhHHHHHHHHhc-cCchhhhhhcccC
Q 026491          187 VRDGLKNPARDYSIPGTTATKIFESIGACANLVFAFN-TGMLPEIQVREEF  236 (238)
Q Consensus       187 i~~~~~~~~~~~~~~~~~~~~~~~~~~a~gi~~Fafg-~~v~p~I~~~M~~  236 (238)
                      .....  -..+.....++...+-++=.-++..+++|. |-+.|..-..|+-
T Consensus       253 l~tmq--aeedaa~a~p~arc~cgfgkl~~~aly~~~a~cmapda~gagq~  301 (319)
T KOG3832|consen  253 LATMQ--AEEDAAAAHPPARCFCGFGKLFGCALYAFMAHCMAPDAIGAGQT  301 (319)
T ss_pred             hhhhh--hcccccccCCccccccccccccchhhHHHHhhccCCCCCCCCee
Confidence            11000  011111111122222233345788889996 8888877666653

>TIGR00906 2A0303 cationic amino acid transport permease

Probab=98.37  E-value=7.6e-05  Score=70.78  Aligned_cols=218  Identities=11%  Similarity=0.000  Sum_probs=116.6

Q ss_pred             ccccchhHHHHHHHHhhhhhhhhhhhhHHhh-hhhhhHHHHHHHHHHHHHHHHHHHHHHhc---cccCCcccCcHHHHHH
Q 026491           15 LEMLDSWFQVGFVLTTGINSAYVLGYPGTVM-VPLGWIAGVVGLIIATIVSLNANALIAKL---HEFGGKRHIRYRDLAG   90 (238)
Q Consensus        15 ~~~~~s~~~a~~~l~~~~iG~GiLalP~a~~-~~~G~~~G~i~l~~~~~~~~yt~~lL~~~---~~~~~~~~~sY~~l~~   90 (238)
                      .+|+-+.++...--+..++|+|+..+|..+. ...|.. .++..++.++.+........+.   .++.|- ...|.   +
T Consensus        26 L~r~L~~~~l~~l~ig~viGsGIf~l~g~~a~~~aGp~-~~ls~liagv~~l~~al~yaElas~~P~sGg-~Y~y~---~  100 (557)
T TIGR00906        26 MKRCLTTWDLMALGIGSTIGAGIYVLTGEVARNDSGPA-IVLSFLISGLAAVLSGFCYAEFGARVPKAGS-AYLYS---Y  100 (557)
T ss_pred             hhhcCCHHHHHHHHhhhhhcchhhhhhhHHHHhccCcH-HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCc-ceeeH---H
Confidence            4667799999999999999999999997512 346753 4445555555555555554444   334332 23344   3


Q ss_pred             HHcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hcC----C-CCCCc-hhhHHHHHHHHHHHHhcCCC
Q 026491           91 HIYGRRAYALTWGLQYVNLFMINTGYIILAGQALKAAFVLF----WKD----D-HTMKL-PYFIAIAGFVCALFAIGIPN  160 (238)
Q Consensus        91 ~~~G~~~~~~v~~~~~i~~~g~~v~yli~~~~~l~~~~~~~----~~~----~-~~~~~-~~~iii~~~~~~lpl~~l~~  160 (238)
                      +.+||...+++.....+.....+.+.....++.+..++...    ..+    + ..... ..++.+..+.+ +-+...+.
T Consensus       101 ~~~G~~~gfi~GW~~~l~~~~~~a~va~~~s~yl~~ll~~~~~~~~~~~~~~~~~~l~~~~~~~a~~ii~l-~~~ln~~G  179 (557)
T TIGR00906       101 VTVGELWAFITGWNLILEYVIGTAAVARSWSAYFDELLNKQIGQFRRTYFKLNYDGLAEYPDFFAVCLILL-LAVLLSFG  179 (557)
T ss_pred             HHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccCCcccccchHHHHHHHHH-HHHHHHhc
Confidence            45899988888887776654444444444455554444321    000    0 00101 11111111111 12223466


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCC-CCCCcCCCC--CCcchhhhhhHhHHHHHHHHh-ccCchhhhhhcccC
Q 026491          161 LSALGVWLGVSTVLSTIYIVIAIWLSVRDGLK-NPARDYSIP--GTTATKIFESIGACANLVFAF-NTGMLPEIQVREEF  236 (238)
Q Consensus       161 l~~l~~~S~~~~~~~~~~~~i~~~~~i~~~~~-~~~~~~~~~--~~~~~~~~~~~~a~gi~~Faf-g~~v~p~I~~~M~~  236 (238)
                      .|..++++.+..+..+...++.++..+.+... +........  +..+..+.+++.+.....|+| |.......-+|+||
T Consensus       180 ik~s~~v~~i~~~iki~~l~~~iv~g~~~~~~~~~~~~~~~~~~~f~p~g~~g~l~g~~~~~faf~Gfd~v~~~aeE~kn  259 (557)
T TIGR00906       180 VKESAWVNKIFTAINILVLLFVIIAGFTKADVANWSITEEKGAGGFMPYGFTGVLSGAATCFFAFIGFDAIATTGEEVKN  259 (557)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHhhhHHHhhCCchhccccccccCCCCCCcchHHHHHHHHHHHHHHhhHHHHHHhHHhccC
Confidence            77777777666544443333333333333221 100000000  111112346778889999999 57777888888888


Q ss_pred             CC
Q 026491          237 RS  238 (238)
Q Consensus       237 ~~  238 (238)
                      |.
T Consensus       260 P~  261 (557)
T TIGR00906       260 PQ  261 (557)
T ss_pred             cc
Confidence            73

>TIGR00913 2A0310 amino acid permease (yeast)

Probab=98.36  E-value=6e-05  Score=69.90  Aligned_cols=214  Identities=11%  Similarity=0.015  Sum_probs=119.3

Q ss_pred             cccchhHHHHHHHHhhhhhhhhhhhhHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhccccCCcccCcHHHHHHHHcCc
Q 026491           16 EMLDSWFQVGFVLTTGINSAYVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKLHEFGGKRHIRYRDLAGHIYGR   95 (238)
Q Consensus        16 ~~~~s~~~a~~~l~~~~iG~GiLalP~a~~~~~G~~~G~i~l~~~~~~~~yt~~lL~~~~~~~~~~~~sY~~l~~~~~G~   95 (238)
                      +|+-+.++...-.+..++|+|++..|..+.++.|...-++..++.+++.+.....+.+......+..-.|.+.+++.+||
T Consensus         1 ~r~L~~~~~~~l~vg~~IGsGif~~~~~~~~~~Gp~~~i~~~~i~~~~~~~~a~~~aEl~s~~P~~gG~~~~~~~~~~g~   80 (478)
T TIGR00913         1 KKSLKQRHIQMIALGGTIGTGLLVGSGTALATGGPAGLLIGYAIMGSIIYCVMQSLGEMATFYPVVSGSFATYASRFVDP   80 (478)
T ss_pred             CCCCcHHHHHHHHHhccccchhhhcchhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHcCc
Confidence            36678899999999999999999988765778885333555666666666666666665221111112588888999999


Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhcCCChhhHHHHHHHHHH--
Q 026491           96 RAYALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTMKLPYFIAIAGFVCALFAIGIPNLSALGVWLGVSTV--  173 (238)
Q Consensus        96 ~~~~~v~~~~~i~~~g~~v~yli~~~~~l~~~~~~~~~~~~~~~~~~~iii~~~~~~lpl~~l~~l~~l~~~S~~~~~--  173 (238)
                      ...+++...+.+.....+.......+..+..+.     +  ......|..+..+++ ..+ -.+..|..+.++.+...  
T Consensus        81 ~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~-----~--~~~~~~~~~~~~~~~-~~i-n~~gv~~~~~~~~~~~~~k  151 (478)
T TIGR00913        81 AFGFAVGWNYWLQWLIVLPLELVTASMTIQYWT-----D--KVNPAVWIAIFYVFI-VII-NLFGVKGYGEAEFWFSSIK  151 (478)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-----C--CCCHHHHHHHHHHHH-HHH-HHhcchHHHHHHHHHHHHH
Confidence            998888887777666555566666666554321     1  122233443322222 122 23445555554443321  


Q ss_pred             -HHHHHHHHHHHHHhhcCCCCCC-Cc---CC-CCCCcc----hhhhhhHhHHHHHHHHh-ccCchhhhhhcccCCC
Q 026491          174 -LSTIYIVIAIWLSVRDGLKNPA-RD---YS-IPGTTA----TKIFESIGACANLVFAF-NTGMLPEIQVREEFRS  238 (238)
Q Consensus       174 -~~~~~~~i~~~~~i~~~~~~~~-~~---~~-~~~~~~----~~~~~~~~a~gi~~Faf-g~~v~p~I~~~M~~~~  238 (238)
                       ..+...++.....+..+.+++. ..   .. .++.+.    ..+.++..++....|+| |......+-+|+|||.
T Consensus       152 i~~l~~~ii~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~knP~  227 (478)
T TIGR00913       152 ILAIIGFIILSIILNCGGGPNHGYIGFRYWHDPGAFAGGTIGGRFKGVCSVFVTAAFSFGGTELVALTAGEAANPR  227 (478)
T ss_pred             HHHHHHHHHHHHHHHHcCCCCCCCCcccccCCCCCCCCCCccchHHHHHHHHHHHHhhhccHHHHHHHHHhhcChh
Confidence             1111111111111111111110 00   00 001111    12345677888899999 5777888889999873

>TIGR00911 2A0308 L-type amino acid transporter

Probab=98.34  E-value=7e-05  Score=69.95  Aligned_cols=218  Identities=12%  Similarity=0.008  Sum_probs=108.7

Q ss_pred             ccCCCccccccchhHHHHHHHHhhhhhhhhhhhhHHhhhhhhhHHHH--HHHHHHHHHHHHHHHHHHhc---cccCCccc
Q 026491            8 SSSYFFHLEMLDSWFQVGFVLTTGINSAYVLGYPGTVMVPLGWIAGV--VGLIIATIVSLNANALIAKL---HEFGGKRH   82 (238)
Q Consensus         8 ~~~~~~~~~~~~s~~~a~~~l~~~~iG~GiLalP~a~~~~~G~~~G~--i~l~~~~~~~~yt~~lL~~~---~~~~~~~~   82 (238)
                      |..++.+.+|+-+.+++..-.+.+++|+|++..|..+.++.|-. |.  +..++.+++.........+.   .++.|   
T Consensus        33 ~~~~~~~l~r~l~~~~~~~l~vg~iiGsGif~~~~~~~~~~G~~-g~~~~~~ii~~i~~~~~al~~aELas~~P~sG---  108 (501)
T TIGR00911        33 DGGEAVALKKEITLLSGVGIIVGTIIGSGIFVSPKGVLKNAGSV-GLALIMWAVCGIFSIVGALVYAELGTTIPKSG---  108 (501)
T ss_pred             ccccccccCccccHhHhhHhheeceEEeeEeecHHHHHhhCCCh-HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC---
Confidence            33333445777899999998999999999999998645666742 32  33445555555555555554   33333   


Q ss_pred             CcHHHHHHHHcCccchhHHHHHHHH-HHHHHHHHHHHHHHHHH-HHHHHHHhcCCCCCCch-hhHHHHHHHHHHHHhcCC
Q 026491           83 IRYRDLAGHIYGRRAYALTWGLQYV-NLFMINTGYIILAGQAL-KAAFVLFWKDDHTMKLP-YFIAIAGFVCALFAIGIP  159 (238)
Q Consensus        83 ~sY~~l~~~~~G~~~~~~v~~~~~i-~~~g~~v~yli~~~~~l-~~~~~~~~~~~~~~~~~-~~iii~~~~~~lpl~~l~  159 (238)
                       ..-.-.++.+||...++....... ...+.+..+.+..++.+ +.+++     +...... ...+...+..++-..-.+
T Consensus       109 -G~y~~~~~~~g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~-----~~~~~~~~~~~i~~~~i~~~~~ln~~  182 (501)
T TIGR00911       109 -GEYNYILEVFGPLLAFLRLWIELLVIRPGSQAVNALNFAIYILTPVFP-----DCEVPEWAIRLVAVLCVLLLTLVNCL  182 (501)
T ss_pred             -chhhhHHhHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-----CCCCchHHHHHHHHHHHHHHHHHHHh
Confidence             223334557999877666554332 22233344444444443 22221     1111111 111111111111111234


Q ss_pred             ChhhHHHHHHHHHHHHHHHHHHHHHHHhh---cCCCCCCCcC--CCCCCcchhhhhhHhHHHHHHHHh-ccCchhhhhhc
Q 026491          160 NLSALGVWLGVSTVLSTIYIVIAIWLSVR---DGLKNPARDY--SIPGTTATKIFESIGACANLVFAF-NTGMLPEIQVR  233 (238)
Q Consensus       160 ~l~~l~~~S~~~~~~~~~~~~i~~~~~i~---~~~~~~~~~~--~~~~~~~~~~~~~~~a~gi~~Faf-g~~v~p~I~~~  233 (238)
                      ..|..+.+..+.....+...++.++..+.   .+.. ++.+.  ..++. ..+..++..++....|+| |-.....+.+|
T Consensus       183 Gvk~~~~~~~i~~~~~l~~l~~~ii~~~~~~~~~~~-~~~~~~~~f~~~-~~~~~~~~~a~~~~~~af~G~e~~~~~a~E  260 (501)
T TIGR00911       183 SVKWATRVQDIFTACKLLALLLIIITGWVQLGKGGV-ESLNPKNAFEGT-ETSAGGIVLAFYSGIWAYGGWNYLNFVTEE  260 (501)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc-cccCcccccCCC-CCcHHHHHHHHHHHHHHHHhHHHHhhhHHH
Confidence            55666555555543333222222222222   1111 00110  11111 112345667888999999 57777888899


Q ss_pred             ccCC
Q 026491          234 EEFR  237 (238)
Q Consensus       234 M~~~  237 (238)
                      +|||
T Consensus       261 ~knP  264 (501)
T TIGR00911       261 VKNP  264 (501)
T ss_pred             hcCc
Confidence            9987

>PRK15049 L-asparagine permease; Provisional

Probab=98.33  E-value=0.00012  Score=68.52  Aligned_cols=92  Identities=14%  Similarity=0.037  Sum_probs=66.8

Q ss_pred             cccchhHHHHHHHHhhhhhhhhhhhhHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhccc-cCCcccCcHHHHHHHHcC
Q 026491           16 EMLDSWFQVGFVLTTGINSAYVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKLHE-FGGKRHIRYRDLAGHIYG   94 (238)
Q Consensus        16 ~~~~s~~~a~~~l~~~~iG~GiLalP~a~~~~~G~~~G~i~l~~~~~~~~yt~~lL~~~~~-~~~~~~~sY~~l~~~~~G   94 (238)
                      +|+-+.++...-.+..++|+|++..|..+.++.|- .+++..++.+++.+..+..+.+... .+.  .-...+-+++.+|
T Consensus        27 ~r~L~~~~~~~i~~G~~IGsGiF~~~g~~~~~aGp-~~il~~li~~i~~~~v~~slaELas~~P~--aGg~y~y~~~~~G  103 (499)
T PRK15049         27 HKAMGNRQVQMIAIGGAIGTGLFLGAGARLQMAGP-ALALVYLICGLFSFFILRALGELVLHRPS--SGSFVSYAREFLG  103 (499)
T ss_pred             hccCCHhHhHHHhhhccccchHHHhhHHHHHhcCC-HHHHHHHHHHHHHHHHHHHHHHHHHhCCC--CCCHHHHHHHHhC
Confidence            44558899999999999999999999865888886 4677777777777777777766622 111  1245666778899


Q ss_pred             ccchhHHHHHHHHHHH
Q 026491           95 RRAYALTWGLQYVNLF  110 (238)
Q Consensus        95 ~~~~~~v~~~~~i~~~  110 (238)
                      |+..+++.....+...
T Consensus       104 ~~~gf~~GW~~~l~~~  119 (499)
T PRK15049        104 EKAAYVAGWMYFINWA  119 (499)
T ss_pred             cHhHHHHHHHHHHHHH
Confidence            9988777776665443

>PRK11357 frlA putative fructoselysine transporter; Provisional

Probab=98.31  E-value=8.7e-05  Score=68.23  Aligned_cols=214  Identities=10%  Similarity=0.030  Sum_probs=105.1

Q ss_pred             ccccccchhHHHHHHHHhhhhhhhhhhhhHHhhhhhhhH-HHHHHHHHHHHHHHHHHHHHHh---ccccCCcccCcHHHH
Q 026491           13 FHLEMLDSWFQVGFVLTTGINSAYVLGYPGTVMVPLGWI-AGVVGLIIATIVSLNANALIAK---LHEFGGKRHIRYRDL   88 (238)
Q Consensus        13 ~~~~~~~s~~~a~~~l~~~~iG~GiLalP~a~~~~~G~~-~G~i~l~~~~~~~~yt~~lL~~---~~~~~~~~~~sY~~l   88 (238)
                      .+.+|+-+.+++..-.+..++|+|++..|..+.++.|-. ..++..++.+++.........+   ..++.|- ...|   
T Consensus         4 ~~L~r~l~~~~~~~l~vg~~ig~Gif~~~g~~~~~~G~~~~~~l~~li~~v~~l~~al~~aEl~s~~P~~GG-~y~y---   79 (445)
T PRK11357          4 QELQRKLGFWAVLAIAVGTTVGSGIFVSVGEVAKAAGTPWLTVLAFVIGGLIVIPQMCVYAELSTAYPENGA-DYVY---   79 (445)
T ss_pred             ccccccccHHHHHHHHHHhheechhccchHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCC-ceee---
Confidence            446778899999999999999999999998634455532 1233344444444444444444   3444442 2344   


Q ss_pred             HHHHcCccchhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhcCCChhhHHHH
Q 026491           89 AGHIYGRRAYALTWGLQY-VNLFMINTGYIILAGQALKAAFVLFWKDDHTMKLPYFIAIAGFVCALFAIGIPNLSALGVW  167 (238)
Q Consensus        89 ~~~~~G~~~~~~v~~~~~-i~~~g~~v~yli~~~~~l~~~~~~~~~~~~~~~~~~~iii~~~~~~lpl~~l~~l~~l~~~  167 (238)
                      .++.+||....+...... .........+.+..++.+...+     +.......  .+.......+-..-.+..|..+.+
T Consensus        80 ~~~~~g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~-----~~~~~~~~--~~~~~~~~~~~~ln~~gv~~~~~v  152 (445)
T PRK11357         80 LKNAGSRPLAFLSGWASFWANDAPSLSIMALAIVSNLGFLT-----PIDPLLGK--FIAAGLIIAFMLLHLRSVEGGAAF  152 (445)
T ss_pred             HHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----CCchHHHH--HHHHHHHHHHHHHHHhhhhHHHHH
Confidence            346799987776666533 2223333445555555543321     11111111  111111110111123444444444


Q ss_pred             HHHHHHHHHHHHHHHHHHHh--hcCCCCCCCcCCCCCCcchhhhhhHhHHHHHHHHh-ccCchhhhhhcccCCC
Q 026491          168 LGVSTVLSTIYIVIAIWLSV--RDGLKNPARDYSIPGTTATKIFESIGACANLVFAF-NTGMLPEIQVREEFRS  238 (238)
Q Consensus       168 S~~~~~~~~~~~~i~~~~~i--~~~~~~~~~~~~~~~~~~~~~~~~~~a~gi~~Faf-g~~v~p~I~~~M~~~~  238 (238)
                      ..+..+..+...++.++..+  .++.+.. .+..........+.++..++....|+| |-.....+.+|+|||.
T Consensus       153 ~~~~~~~~~~~l~~~ii~g~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~  225 (445)
T PRK11357        153 QTLITIAKIIPFTIVIGLGIFWFKAENFA-APTTTAIGATGSFMALLAGISATSWSYTGMASICYMTGEIKNPG  225 (445)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCcccc-CCCcccccccchHHHHHHHHHHHHHHHhhHHHHHhhHHHhcCcc
Confidence            44433222222211222222  1221100 000000001111345667888899999 5788888899999873

>PRK10836 lysine transporter; Provisional

Probab=98.30  E-value=7.3e-05  Score=69.68  Aligned_cols=95  Identities=7%  Similarity=-0.037  Sum_probs=69.4

Q ss_pred             CCCccccccchhHHHHHHHHhhhhhhhhhhhhHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhc---cccCCcccCcHH
Q 026491           10 SYFFHLEMLDSWFQVGFVLTTGINSAYVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKL---HEFGGKRHIRYR   86 (238)
Q Consensus        10 ~~~~~~~~~~s~~~a~~~l~~~~iG~GiLalP~a~~~~~G~~~G~i~l~~~~~~~~yt~~lL~~~---~~~~~~~~~sY~   86 (238)
                      .++++.+|+-+.++...-.+.+++|+|++..|..+.++.|-...++..++.+++.+.....+.+.   .++.|    ...
T Consensus         8 ~~~~~l~r~L~~~~~~~l~vG~~IGsGif~~~g~~~~~aGp~~~l~a~~i~g~~~~~~al~~aEL~s~~P~sG----g~y   83 (489)
T PRK10836          8 TEAPGLRRELKARHLTMIAIGGSIGTGLFVASGATISQAGPGGALLSYMLIGLMVYFLMTSLGELAAYMPVSG----SFA   83 (489)
T ss_pred             CCcccccccCcHHHHHHHHHhhhhhhhhhHhhhHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC----CHH
Confidence            34555677889999999999999999999999865888886445777777778777777777766   23333    345


Q ss_pred             HHHHHHcCccchhHHHHHHHHH
Q 026491           87 DLAGHIYGRRAYALTWGLQYVN  108 (238)
Q Consensus        87 ~l~~~~~G~~~~~~v~~~~~i~  108 (238)
                      .-+++.+||....++.......
T Consensus        84 ~y~~~~~g~~~gf~~Gw~~~~~  105 (489)
T PRK10836         84 TYGQNYVEEGFGFALGWNYWYN  105 (489)
T ss_pred             HHHHHHcChHHHHHHHHHHHHH
Confidence            5556678888777776655543

>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]

Probab=98.27  E-value=0.00018  Score=65.48  Aligned_cols=212  Identities=13%  Similarity=0.088  Sum_probs=133.7

Q ss_pred             CccccccchhHHHHHHHHhhhhhhhhh-hhhHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhccc-cCCcccCcHHHHH
Q 026491           12 FFHLEMLDSWFQVGFVLTTGINSAYVL-GYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKLHE-FGGKRHIRYRDLA   89 (238)
Q Consensus        12 ~~~~~~~~s~~~a~~~l~~~~iG~GiL-alP~a~~~~~G~~~G~i~l~~~~~~~~yt~~lL~~~~~-~~~~~~~sY~~l~   89 (238)
                      +++-+|.-+.++--.-=+...||+|.. +--.+ .+.+|- .=++.-.+++++.+.=++.|.+... ++.  ..|+.+.+
T Consensus         8 ~~~l~rgL~~RHIqlIAiGGaIGtGLFlGSg~~-I~~AGP-SvlLaY~I~G~~~f~iMRaLGEm~~~~p~--~gSF~~~a   83 (462)
T COG1113           8 EQGLKRGLKNRHIQLIAIGGAIGTGLFLGSGSA-IAMAGP-SVLLAYLIAGIFVFLIMRALGEMLVANPV--SGSFSDYA   83 (462)
T ss_pred             chhhhhhhHHHHHHHHHHhhhhhhhhhcccchh-hhhhCc-HHHHHHHHHHHHHHHHHHHHHHHHHhCCC--CCcHHHHH
Confidence            334556678999888888999999973 44556 778884 2444566777788888888888732 222  35899999


Q ss_pred             HHHcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHH---HHHhcCCChhhHHH
Q 026491           90 GHIYGRRAYALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTMKLPYFIAIAGFVCA---LFAIGIPNLSALGV  166 (238)
Q Consensus        90 ~~~~G~~~~~~v~~~~~i~~~g~~v~yli~~~~~l~~~~~~~~~~~~~~~~~~~iii~~~~~~---lpl~~l~~l~~l~~  166 (238)
                      ++.+||++..+++...-..-.-++.+-+.-.|..++.++++.         ..|+....++.+   +=+.-.|.+.++-+
T Consensus        84 ~~~lG~~Agf~tgW~YW~~wv~v~~ae~tAi~~y~~~WfP~v---------P~Wv~al~~~~l~~~~NL~sVk~FGE~Ef  154 (462)
T COG1113          84 RKYLGPWAGFLTGWTYWFFWVLVGIAELTAIGIYLQFWFPDV---------PQWVFALAAVVLLLAVNLISVKVFGELEF  154 (462)
T ss_pred             HHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC---------cHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999888888999999999999888877422         244443333221   22333456666644


Q ss_pred             -HHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcCCCCC------CcchhhhhhHhHHHHHHHHhc-cCchhhhhhcccCC
Q 026491          167 -WLGVSTVLSTIYIVIAIWLSVRDGLKNPARDYSIPG------TTATKIFESIGACANLVFAFN-TGMLPEIQVREEFR  237 (238)
Q Consensus       167 -~S~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~------~~~~~~~~~~~a~gi~~Fafg-~~v~p~I~~~M~~~  237 (238)
                       ++++=++..+..+++.. ..+..+.+++....++.+      .-+..+.+++.++-+.+|||+ ...+---.+|-|||
T Consensus       155 WfAlIKV~aIi~~Iv~G~-~ll~~g~~~~~~~~g~snl~~hGGffP~G~~g~~~~~~~v~Faf~GiElvGitA~Et~dP  232 (462)
T COG1113         155 WFALIKVAAIIAFIVVGI-VLLFGGFGGGGGAAGFSNLWDHGGFFPNGFLGFLSALQIVMFAFGGIELVGITAAEAKDP  232 (462)
T ss_pred             HHHHHHHHHHHHHHHHHH-HHHhhccCCCCCCccccccccCCCcCCCchHHHHHHHHHHHHHHhhHHHHHHHHHhhcCh
Confidence             44444433333222222 223333332221112211      112345678889999999995 65555455555555

>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A

Probab=98.24  E-value=5.1e-05  Score=69.02  Aligned_cols=207  Identities=14%  Similarity=0.098  Sum_probs=115.9

Q ss_pred             hhHHHHHHHHhhhhhhhhhhhhHHhhhhhhhHHHHHHHHHHHHHH-HHHHHHHHhc---cccCCcccCcHHHHHHHHcCc
Q 026491           20 SWFQVGFVLTTGINSAYVLGYPGTVMVPLGWIAGVVGLIIATIVS-LNANALIAKL---HEFGGKRHIRYRDLAGHIYGR   95 (238)
Q Consensus        20 s~~~a~~~l~~~~iG~GiLalP~a~~~~~G~~~G~i~l~~~~~~~-~yt~~lL~~~---~~~~~~~~~sY~~l~~~~~G~   95 (238)
                      +++++..-..+.++|+|+...| . .++.|.. .++..++.+.+. .-......+.   .++.|    ...+-.++++||
T Consensus         2 ~~~~~~~l~~~~~~g~gi~~~~-~-~~~~G~~-~~~~~~i~~~~~~l~~a~~~~el~~~~p~~G----G~y~~~~~~~g~   74 (426)
T PF13520_consen    2 GLFSAIALVIGSIIGSGIFFSP-A-AASAGPS-AILAWIIAALLFFLPIALSYAELSSAYPSAG----GIYVWVSRAFGP   74 (426)
T ss_dssp             -HHHHHHHHHHCHHTTTTTTHH-H-HTCTGCH-HHHHHHHHHHHHHHHHHHHHHHHHTTTTSST----THHHHHHHHH-H
T ss_pred             CHHHHHHHHHHHHHHHHHHHHH-H-HHHHhHH-HHHHHHHHHHHHHHHHHHHHHHHhccCCCcC----eeeehhhhcccc
Confidence            6788899999999999999999 6 7788864 444444443433 3333333333   33332    455677888999


Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCCCCCchhhHHHHHHHHHHHHhcCCChhhHHHHHHHHHHH
Q 026491           96 RAYALTWGLQYVNLFMINTGYIILAGQALKAAFVL-FWKDDHTMKLPYFIAIAGFVCALFAIGIPNLSALGVWLGVSTVL  174 (238)
Q Consensus        96 ~~~~~v~~~~~i~~~g~~v~yli~~~~~l~~~~~~-~~~~~~~~~~~~~iii~~~~~~lpl~~l~~l~~l~~~S~~~~~~  174 (238)
                      +...+......+........+....++.+...+.. +.    ......+.+...++...-..-.+..|..+++..+..+.
T Consensus        75 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~i~~~~~~~~~~l~~~g~~~~~~~~~~~~~~  150 (426)
T PF13520_consen   75 FWGFIVGWLYWVAYILSLASVASSFASYLLSLFGPDLN----PSPWPQFLIAIILILLFTLLNLLGIKLSGKIQNILTVI  150 (426)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTGGGT----CSHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred             cchhcccceeEEEeeccccccccchhhhhhhccccccc----cccchheeeeecccccceEeeechhhhhhhhhhhhhhh
Confidence            99888888888777777777777777777654421 11    11111111111111112223345677777776666544


Q ss_pred             HH-HHHHHHHHHHhhcCCCCCCC--cCCCCCCcchhhhhhHhHHHHHHHHh-ccCchhhhhhcccCC
Q 026491          175 ST-IYIVIAIWLSVRDGLKNPAR--DYSIPGTTATKIFESIGACANLVFAF-NTGMLPEIQVREEFR  237 (238)
Q Consensus       175 ~~-~~~~i~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~a~gi~~Faf-g~~v~p~I~~~M~~~  237 (238)
                      .+ ...++.+...+.....+...  +...+..........+.++....|+| |....+...+|+|||
T Consensus       151 ~i~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~k  217 (426)
T PF13520_consen  151 KIVIPLLVLIILGIVSFSFSGFNSLSFSLSTFFPSGWPGFLAGFSVAFFAFSGFEAIASLAEENKNK  217 (426)
T ss_dssp             HHHHHHHHHHHHHHHSTTCCHHH----SHSCSSCSSSSHHHHHHHHHGGGGTTTTHHHHGGGGSSSH
T ss_pred             hhhhhhhhheeEEEeeecccccccccccccccCCccccchhhHHHHHHhhcccccccccccccccch
Confidence            44 22222233334433221100  00000000011223578889999999 488889999999886

...

>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell

Probab=98.19  E-value=0.00039  Score=61.23  Aligned_cols=141  Identities=15%  Similarity=0.154  Sum_probs=88.1

Q ss_pred             cchhHHHHHHHHhhhhhhhhhhhhHHhhhhh---hhHHHHHHHHHHHHHHHHHHHHHHhccccCCcccCcHHHHHHHHcC
Q 026491           18 LDSWFQVGFVLTTGINSAYVLGYPGTVMVPL---GWIAGVVGLIIATIVSLNANALIAKLHEFGGKRHIRYRDLAGHIYG   94 (238)
Q Consensus        18 ~~s~~~a~~~l~~~~iG~GiLalP~a~~~~~---G~~~G~i~l~~~~~~~~yt~~lL~~~~~~~~~~~~sY~~l~~~~~G   94 (238)
                      |-|..|...-+..+.+|+|++.+|.. .++.   ||.. .   ++.+.......++..+..++.+  .++..|..++.+|
T Consensus         1 kIS~~Q~~~l~~~~~~g~~~l~~p~~-l~~~~~d~Wi~-~---ll~~~~~l~~~~l~~~l~~~~p--~~~l~~~~~~~~G   73 (320)
T PF03845_consen    1 KISPRQLFFLLISSIIGTGILFLPAI-LAEQAGDAWIS-V---LLGGLIGLLLALLIYYLLKRFP--GKTLVEISEKLFG   73 (320)
T ss_pred             CcCHHHHHHHHHHHHHHHHHHHHHHH-HHHHcCCcHHH-H---HHHHHHHHHHHHHHHHHHHHCC--CCCHHHHHHHHhC
Confidence            34778999999999999999999998 5444   5753 3   3333333333333333322211  3479999999999


Q ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhcCCChhhHHHHHHHHHH
Q 026491           95 RRAYALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTMKLPYFIAIAGFVCALFAIGIPNLSALGVWLGVSTV  173 (238)
Q Consensus        95 ~~~~~~v~~~~~i~~~g~~v~yli~~~~~l~~~~~~~~~~~~~~~~~~~iii~~~~~~lpl~~l~~l~~l~~~S~~~~~  173 (238)
                      |+..+++.....+..+......+-..+|.++..+-    ++    +..|.+.....+..--.-.+.++.++..+-+-..
T Consensus        74 k~lg~ii~~~~~l~~l~~~~~~lr~~~~~i~~~~l----p~----TP~~~i~~~~ll~~~y~a~~G~e~i~R~~~~~~~  144 (320)
T PF03845_consen   74 KWLGKIINLLYILYFLLISALVLREFSEFIKTYLL----PE----TPIWVIILLFLLVAAYAARKGIEVIARVAEILFP  144 (320)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----Cc----CCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence            99888888877777777777777777777665432    11    1233333322221233335678888775555443

A number of such proteins have been found to be evolutionary related [, , ]. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. Spore germination protein (amino acid permease) is involved in the response to the germinative mixture of L-asparagine, glucose, fructose and potassium ions (AFFK). These proteins could be amino acid transporters.; GO: 0009847 spore germination, 0016021 integral to membrane

>TIGR00800 ncs1 NCS1 nucleoside transporter family

Probab=98.18  E-value=0.00096  Score=61.48  Aligned_cols=206  Identities=14%  Similarity=0.070  Sum_probs=108.4

Q ss_pred             hHHHHHHHHhhhhhhhhhhhhHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhccccCCcccCcHHHHHHHHcCccchhH
Q 026491           21 WFQVGFVLTTGINSAYVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKLHEFGGKRHIRYRDLAGHIYGRRAYAL  100 (238)
Q Consensus        21 ~~~a~~~l~~~~iG~GiLalP~a~~~~~G~~~G~i~l~~~~~~~~yt~~lL~~~~~~~~~~~~sY~~l~~~~~G~~~~~~  100 (238)
                      |+.+.+|+.+-..|+...++      -+++...++.+++...+..--.-+....-++.|   .++..+.|..||.++..+
T Consensus        23 W~~~~~~v~~~~~Ga~l~~~------GLs~~~ailai~lG~~i~~~~~~l~~~~G~r~G---l~~~v~sR~~FG~~Gs~~   93 (442)
T TIGR00800        23 WLGAAFNIATWAIGALGLPL------GLSWWQSVIAIILGNLLGGIFVALNSRAGAKYG---LPFPVLSRASFGIYGSLL   93 (442)
T ss_pred             HHHHhhhHHHHHHHHHHHhc------CCcHHHHHHHHHHHHHHHHHHHHHhhhhHHHhC---CCcchhhhhhhhhhHhHH
Confidence            45555666666666533221      133334444444444443333333333323343   468899999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC------chhhHHHHHHHHHHHHhcCCChhhHHHHHHHHHHH
Q 026491          101 TWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTMK------LPYFIAIAGFVCALFAIGIPNLSALGVWLGVSTVL  174 (238)
Q Consensus       101 v~~~~~i~~~g~~v~yli~~~~~l~~~~~~~~~~~~~~~------~~~~iii~~~~~~lpl~~l~~l~~l~~~S~~~~~~  174 (238)
                      ..+...+..+|-........|+.+..+.+...++.....      .....+++..+. +++....-.|-+......+...
T Consensus        94 ~~~~~~i~~igW~av~~~~~g~al~~~l~~i~~~~~~~~~~~t~~~~~~~~i~~~l~-~~~~~~~g~~~~~~~~~~a~~~  172 (442)
T TIGR00800        94 PSLLRIVMAIGWYGVQAWVGGLCVALMLDSIFPGYLHLGNGMTTLELICFIIFWALV-LVFLFFFGYKIRHLFEWLAVVP  172 (442)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcccccccCCcccHHHHHHHHHHHHHH-HHHHHcCHHHHHHHHHHHHHHH
Confidence            999999999999999999999999888877543211111      122233333333 4544555555555555555432


Q ss_pred             HHHHHHHHHHHHhhcCCCCCCCcCCCC-CCcchhhhhhHhHHHHHHHHh-c-cCchhhhhhcccCC
Q 026491          175 STIYIVIAIWLSVRDGLKNPARDYSIP-GTTATKIFESIGACANLVFAF-N-TGMLPEIQVREEFR  237 (238)
Q Consensus       175 ~~~~~~i~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~a~gi~~Faf-g-~~v~p~I~~~M~~~  237 (238)
                      .+....+.+......+.. .+...... ..+....+.+..++.+.+=.+ + ....|...+-+|+|
T Consensus       173 ~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~f~~~~~~~~g~~~s~~~~~~DysRy~~~~  237 (442)
T TIGR00800       173 PFAAFGMLIWALSKAHGK-GPLGELTGTLHGSTGAWAFLYALSLVIGSFATWATNAPDFTRFGKSK  237 (442)
T ss_pred             HHHHHHHHHHHHHHcCCC-CccccCCCCCCcchhHHHHHHHHHHHHHHHHHHHcCchhhhhhcCCc
Confidence            211111111111121111 11100000 011223455555555533333 3 47888888888875

The NCS1 family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.

>TIGR00930 2a30 K-Cl cotransporter

Probab=98.14  E-value=0.00014  Score=72.81  Aligned_cols=113  Identities=8%  Similarity=-0.063  Sum_probs=83.6

Q ss_pred             ccchhHHHHHHH-HhhhhhhhhhhhhHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcccc-CCcccCcHHHHHHHHcC
Q 026491           17 MLDSWFQVGFVL-TTGINSAYVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKLHEF-GGKRHIRYRDLAGHIYG   94 (238)
Q Consensus        17 ~~~s~~~a~~~l-~~~~iG~GiLalP~a~~~~~G~~~G~i~l~~~~~~~~yt~~lL~~~~~~-~~~~~~sY~~l~~~~~G   94 (238)
                      +|-++++.++-. +..++|.|+.--|.-+..++|...+++.+++.++++..|..-+...... ..+.--.|.-+ .+++|
T Consensus        76 ~~lG~~~GV~~~~~~nIiGv~iFlr~~~Vvg~aG~~~sll~~~la~~vtlltaLS~seiaTng~p~aGG~Y~yi-sralG  154 (953)
T TIGR00930        76 VKFGWVMGVLVPCLLNIWGVILFLRLSWIVGQAGIGLSLLIILLCCCVTTITGLSMSAIATNGVVKGGGAYYLI-SRSLG  154 (953)
T ss_pred             cccceeEeeeHhhhHhHheeeeeeeHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHH-HHHhC
Confidence            355788888877 8999999998777765889998778888888888888888887766321 00101135444 56699


Q ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026491           95 RRAYALTWGLQYVNLFMINTGYIILAGQALKAAFVL  130 (238)
Q Consensus        95 ~~~~~~v~~~~~i~~~g~~v~yli~~~~~l~~~~~~  130 (238)
                      |.....+.+...+.+...+..|.+-.++.+..+++.
T Consensus       155 p~~Gf~iG~~~~la~~va~A~~~~Gf~eyl~~lf~~  190 (953)
T TIGR00930       155 PEFGGSIGLIFAFANAVAVAMYVVGFAETVLDLLRE  190 (953)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            988777777777777777888999899988877753

>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism]

Probab=98.13  E-value=0.00052  Score=62.86  Aligned_cols=219  Identities=16%  Similarity=0.066  Sum_probs=115.6

Q ss_pred             CCccccccchhHH-HHHHHHhhhhhhhhhhhhHHhhhhhhhHHHHHHHHHHHHHHH---HHHHHHHhccccCCcccCcHH
Q 026491           11 YFFHLEMLDSWFQ-VGFVLTTGINSAYVLGYPGTVMVPLGWIAGVVGLIIATIVSL---NANALIAKLHEFGGKRHIRYR   86 (238)
Q Consensus        11 ~~~~~~~~~s~~~-a~~~l~~~~iG~GiLalP~a~~~~~G~~~G~i~l~~~~~~~~---yt~~lL~~~~~~~~~~~~sY~   86 (238)
                      .+...+++-+.++ ...-.....+|.|++.+|.. ....+ ....+..++.+++..   ++..-+.+..++.|    .+-
T Consensus         6 ~~~~~~~~l~~~~~~~~~~~~~~~~~gif~~~~~-~~~~~-~~~~~~~li~~~~~~~~a~~~~el~~~~p~~G----G~y   79 (466)
T COG0531           6 MSSELKKKLGLFDLLTALGVGSMIGSGIFALPGS-AAGLA-PAAILAWLIAGIIILFLALSYAELSSAIPSAG----GAY   79 (466)
T ss_pred             cchhcCCCcchHHHHHHHHHHhhHhhhhHhhhhh-HHHhc-hHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC----Cee
Confidence            3444556666666 66667888999999999988 66654 112222233333333   34444444333333    455


Q ss_pred             HHHHHHcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHH-HHHHhcCCChhhHH
Q 026491           87 DLAGHIYGRRAYALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTMKLPYFIAIAGFVC-ALFAIGIPNLSALG  165 (238)
Q Consensus        87 ~l~~~~~G~~~~~~v~~~~~i~~~g~~v~yli~~~~~l~~~~~~~~~~~~~~~~~~~iii~~~~~-~lpl~~l~~l~~l~  165 (238)
                      +-.++.+||+..+++.....+.......+..+..++.+..+++...  ........+..+..+.. .+-+.-.+..|..+
T Consensus        80 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ln~~G~~~~~  157 (466)
T COG0531          80 AYAKRALGPRLGFLAGWLYLLAYVIALAAIAIGAASYLSYLFPGPG--LLSIGPLLIILIALALIALLTLLNLRGIKASA  157 (466)
T ss_pred             eehhhhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcch--hhcCCchHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence            6677889998888888888887777777777777776655544210  00001011122111111 11222344555555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcCCCCCCcchhhhhhHhHHHHHHHHh-ccCchhhhhhcccCC
Q 026491          166 VWLGVSTVLSTIYIVIAIWLSVRDGLKNPARDYSIPGTTATKIFESIGACANLVFAF-NTGMLPEIQVREEFR  237 (238)
Q Consensus       166 ~~S~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~a~gi~~Faf-g~~v~p~I~~~M~~~  237 (238)
                      ....+..+..+...++.....+.....++................+..++....++| |-.....+.+|+|||
T Consensus       158 ~~~~~~~~~~i~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~E~knp  230 (466)
T COG0531         158 KINSIITILKIIILLIFIILGLFAFGFSNGNLFAPFNPGGGSFGGILAAILLAFFAFTGFEAIATLAEEVKNP  230 (466)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCccccccCCCcccccchHHHHHHHHHHHHHHhhcHHHHHHHHHHhcCc
Confidence            555555444433333333333333322110000000000111224677888899999 577777788899886

>TIGR03428 ureacarb_perm permease, urea carboxylase system

Probab=98.08  E-value=0.0023  Score=59.47  Aligned_cols=222  Identities=9%  Similarity=-0.053  Sum_probs=106.3

Q ss_pred             CccccccchhHHHHHHHHhh-hhhhhhhhhhHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhc---cccCCcccCcHHH
Q 026491           12 FFHLEMLDSWFQVGFVLTTG-INSAYVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKL---HEFGGKRHIRYRD   87 (238)
Q Consensus        12 ~~~~~~~~s~~~a~~~l~~~-~iG~GiLalP~a~~~~~G~~~G~i~l~~~~~~~~yt~~lL~~~---~~~~~~~~~sY~~   87 (238)
                      +++-+|+-+.++...--.+. .++.|+.++|..+..+.|- .-+...++.++........+.+.   ++..|    ..-.
T Consensus         8 ~~~L~R~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~Gp-~~~~~~li~~i~~l~~als~aEL~s~~P~aG----G~Y~   82 (475)
T TIGR03428         8 QPQLHRKLGRYASFAAGFSFVSILTTIFQLFGFGYGFGGP-AFFWTWPVVFVGQLLVALNFAELAARYPISG----AIYQ   82 (475)
T ss_pred             ccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-HHHHHHHHHHHHHHHHHHHHHHHHhhCCCCC----CHHH
Confidence            44456777888776655554 4889999988764666665 33444445555555444444444   33333    2233


Q ss_pred             HHHHHcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCCCCC---C--chhhHHHHHHHHHHHHhcCCC
Q 026491           88 LAGHIYGRRAYALTWGLQYVNLFMINTGYIILAGQALKAAFVLFW--KDDHTM---K--LPYFIAIAGFVCALFAIGIPN  160 (238)
Q Consensus        88 l~~~~~G~~~~~~v~~~~~i~~~g~~v~yli~~~~~l~~~~~~~~--~~~~~~---~--~~~~iii~~~~~~lpl~~l~~  160 (238)
                      -+++.+||...+++.....+................+..+.+...  .++...   .  ...+.+...+..+.-+.-.+.
T Consensus        83 ~~~~~~g~~~gf~~gW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~g  162 (475)
T TIGR03428        83 WSRRMGGEVIGWFAGWFMIIAQIVTAAAAAIALQVVLPNIWSGFQIIGEDPTLTSPSGAANAVLLGSVLLVLTTVINCIG  162 (475)
T ss_pred             HHHHHcCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCccccCCCchHHHHHHHHHHHHHHHHHHHhh
Confidence            456678999888887777665543333333333333333321110  001011   0  112222211111111112234


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCc--CCCCCCcchhhhhhHhHHHHHHHHh-ccCchhhhhhcccCC
Q 026491          161 LSALGVWLGVSTVLSTIYIVIAIWLSVRDGLKNPARD--YSIPGTTATKIFESIGACANLVFAF-NTGMLPEIQVREEFR  237 (238)
Q Consensus       161 l~~l~~~S~~~~~~~~~~~~i~~~~~i~~~~~~~~~~--~~~~~~~~~~~~~~~~a~gi~~Faf-g~~v~p~I~~~M~~~  237 (238)
                      .|..+.+..+..+..+...+++++..+.....+++..  ....+........+..+.....|+| |-.....+-+|+|||
T Consensus       163 ~k~~~~i~~~~~~~~i~~l~~iii~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~aeE~knP  242 (475)
T TIGR03428       163 VEWMSRVNTIGVTCEIVGVLAVIGVLFTHAQRGPGVVFDTSVTGASPGYYGAFLVSGLMAAYVMVGFGSAGELSEETKNP  242 (475)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceeeecCCCCCCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhcCc
Confidence            4555555555443332222222222222221111110  0111111111223444566678999 578888899999998


Q ss_pred             C
Q 026491          238 S  238 (238)
Q Consensus       238 ~  238 (238)
                      .
T Consensus       243 ~  243 (475)
T TIGR03428       243 R  243 (475)
T ss_pred             c
Confidence            4

A number of bacteria obtain nitrogen by biotin- and ATP-dependent urea degradation system distinct from urease. The two characterized proteins of this system are the enzymes urea carboxylase and allophanate hydrolase, but other, uncharacterized proteins co-occur as genes encoded nearby in multiple organisms. This family includes predicted permeases of the amino acid permease family, likely to transport either urea or a compound from which urea is derived. It is found so far only Actinobacteria, whereas a number of other species with the urea carboxylase have an adjacent ABC transporter operon.

>PRK10197 gamma-aminobutyrate transporter; Provisional

Probab=98.04  E-value=0.00052  Score=63.26  Aligned_cols=199  Identities=12%  Similarity=0.051  Sum_probs=104.4

Q ss_pred             HhhhhhhhhhhhhHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhccccCCcccCcHHHHHHHHcCccchhHHHHHHHHH
Q 026491           29 TTGINSAYVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKLHEFGGKRHIRYRDLAGHIYGRRAYALTWGLQYVN  108 (238)
Q Consensus        29 ~~~~iG~GiLalP~a~~~~~G~~~G~i~l~~~~~~~~yt~~lL~~~~~~~~~~~~sY~~l~~~~~G~~~~~~v~~~~~i~  108 (238)
                      +.+++|+|++-.|..+.++.|. ..++..++.+++.........+......+ .-...+-+++.+||+...++.....+.
T Consensus         4 ig~~IGsGif~~~g~~~~~aG~-~~ll~~~i~gi~~~~~al~~aEL~s~~P~-~Gg~y~y~~~~~G~~~gf~~gw~~~~~   81 (446)
T PRK10197          4 IAGVIGASLFVGSSVAIAEAGP-AVLLAYLFAGLLVVMIMRMLAEMAVATPD-TGSFSTYADKAIGRWAGYTIGWLYWWF   81 (446)
T ss_pred             ecchhHhHHHHHhHHHHHhcCh-HHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CCCHHHHHHHHcChHHHHHHHHHHHHH
Confidence            4578999999999955889996 47777777788777777777666321111 124666777889999888887777765


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHH--HHHHHH
Q 026491          109 LFMINTGYIILAGQALKAAFVLFWKDDHTMKLPYFIAIAGFVCALFAIGIPNLSALGVWLGVSTVLSTIYIV--IAIWLS  186 (238)
Q Consensus       109 ~~g~~v~yli~~~~~l~~~~~~~~~~~~~~~~~~~iii~~~~~~lpl~~l~~l~~l~~~S~~~~~~~~~~~~--i~~~~~  186 (238)
                      ............+..++..    . +  ......+.++...+. ..+ -....|..+.+..+..+.-+...+  ++....
T Consensus        82 ~~~~~~~~~~~~~~~~~~~----~-~--~~~~~~~~~~~l~~~-~~l-N~~gv~~~~~i~~~~~~~ki~~li~~ii~~~~  152 (446)
T PRK10197         82 WVLVIPLEANIAAMILHSW----V-P--GIPIWLFSLVITLAL-TGS-NLLSVKNYGEFEFWLALCKVIAILAFIFLGAV  152 (446)
T ss_pred             HHHHHHHHHHHHHHHHHhc----c-c--cCcHHHHHHHHHHHH-HHH-HHHhhHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            5544443333333333322    1 1  112122222222211 122 123344444444333221111111  111111


Q ss_pred             hhcCCC-CCCC-c--CCCC--CCcchhhhhhHhHHHHHHHHh-ccCchhhhhhcccCCC
Q 026491          187 VRDGLK-NPAR-D--YSIP--GTTATKIFESIGACANLVFAF-NTGMLPEIQVREEFRS  238 (238)
Q Consensus       187 i~~~~~-~~~~-~--~~~~--~~~~~~~~~~~~a~gi~~Faf-g~~v~p~I~~~M~~~~  238 (238)
                      ...+.. ..+. .  ...+  +..+..+.++..++....|+| |-......-+|+|||.
T Consensus       153 ~~~g~~~~~~~~~~~~~~~~~~~~p~g~~~~~~a~~~~~faf~G~e~~~~~a~E~knP~  211 (446)
T PRK10197        153 AISGFYPYAEVSGISRLWDSGGFMPNGFGAVLSAMLITMFSFMGAEIVTIAAAESDTPE  211 (446)
T ss_pred             HhcCCCCCCCCCcchhcCCCCCCCcccHHHHHHHHHHHHHHHhCHHHHHHHHHHhcChh
Confidence            112211 0000 0  0000  000112346778999999999 5777888888888873

>KOG1287 consensus Amino acid transporters [Amino acid transport and metabolism]

Probab=97.70  E-value=0.001  Score=61.33  Aligned_cols=216  Identities=13%  Similarity=0.076  Sum_probs=116.1

Q ss_pred             CCCccccccchhHHHHHHHHhhhhhhhhhhhhHHhhhhhhhH-HHHHHHHHHHHHHHHHHHHHHh---ccccCCcccCcH
Q 026491           10 SYFFHLEMLDSWFQVGFVLTTGINSAYVLGYPGTVMVPLGWI-AGVVGLIIATIVSLNANALIAK---LHEFGGKRHIRY   85 (238)
Q Consensus        10 ~~~~~~~~~~s~~~a~~~l~~~~iG~GiLalP~a~~~~~G~~-~G~i~l~~~~~~~~yt~~lL~~---~~~~~~~~~~sY   85 (238)
                      +++...+||-+.+.+.+.++..++|.|+...|..+.++.|=+ ..++.-+++++++.-....=++   ..+++|-   +|
T Consensus         5 ~~~~~~~kkigll~~v~livg~iIGsGIFvsp~~Vl~~~gsvg~sL~iWv~~gi~s~~galcyaELGT~ipksGg---d~   81 (479)
T KOG1287|consen    5 GEEVQLKKKIGLLSGVSLIVGNIIGSGIFVSPKGVLANTGSVGLSLIIWVFCGIISIIGALCYAELGTSIPKSGG---DY   81 (479)
T ss_pred             cccccccceeeeecceeEEEEeeEecccccCcHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHhccccCCCc---ch
Confidence            344556788899999999999999999999999977777633 2333444555555554444333   3445553   46


Q ss_pred             HHHHHHHcCccc-hhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhcCCChhh
Q 026491           86 RDLAGHIYGRRA-YALTWGLQYVNLFMINTGYIILAGQA-LKAAFVLFWKDDHTMKLPYFIAIAGFVCALFAIGIPNLSA  163 (238)
Q Consensus        86 ~~l~~~~~G~~~-~~~v~~~~~i~~~g~~v~yli~~~~~-l~~~~~~~~~~~~~~~~~~~iii~~~~~~lpl~~l~~l~~  163 (238)
                      .-+.+. |||.. -...++..++..-..+..+-+..++- ++..++.     ....+..--++ +..+ +.+....|..+
T Consensus        82 ayi~~a-fg~~~aF~~~wvs~l~~~p~~~Ai~altF~~Y~l~p~fp~-----c~~p~~~~~ll-a~~~-l~~lt~~n~~~  153 (479)
T KOG1287|consen   82 AYISEA-FGPFPAFLFLWVSLLIIVPTSAAIIALTFATYLLKPFFPL-----CDVPRVASKLL-AAAL-LVLLTLINSFS  153 (479)
T ss_pred             hhHHHH-hccchhHHHHHHHHHHHhhhHHHHHHHHHHHHhhcccCCC-----CCCchHHHHHH-HHHH-HHHHHHHhhhh
Confidence            666544 77754 33334444443444456677777775 6666541     12222222222 2223 22334567777


Q ss_pred             HHHHHHHHHHHHHH---HHHHHHHHHhhcCCCCCCC--cCC-CCCCcchhhhhhHhHHHHHHHHh-ccCchhhhhhcccC
Q 026491          164 LGVWLGVSTVLSTI---YIVIAIWLSVRDGLKNPAR--DYS-IPGTTATKIFESIGACANLVFAF-NTGMLPEIQVREEF  236 (238)
Q Consensus       164 l~~~S~~~~~~~~~---~~~i~~~~~i~~~~~~~~~--~~~-~~~~~~~~~~~~~~a~gi~~Faf-g~~v~p~I~~~M~~  236 (238)
                      +++.+.+-.+.++.   .+.++++..+.........  +.. .+++. .+.-++-.++=.-.||| |-+.+--+.+|+||
T Consensus       154 V~~a~~vq~~ft~~Kl~al~lIii~G~~~~~~g~~~~~~~~~f~g~~-~~~g~i~lafysglfa~~GWd~lN~vteEikn  232 (479)
T KOG1287|consen  154 VKWATRVQIVFTIAKLLALLLIIITGLYLLFWGSTQNFENSEFEGSD-TDVGNIALAFYSGLFAFSGWDYLNYVTEEIKN  232 (479)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhchheeEecccccccccccccCc-CchHHHHHHHHHhhhcccCchhhccchHhhcC
Confidence            77766665543332   2222222233322111000  101 22211 12223456777788899 45566666666666


Q ss_pred             C
Q 026491          237 R  237 (238)
Q Consensus       237 ~  237 (238)
                      |
T Consensus       233 P  233 (479)
T KOG1287|consen  233 P  233 (479)
T ss_pred             c
Confidence            6

>TIGR00907 2A0304 amino acid permease (GABA permease)

Probab=97.44  E-value=0.032  Score=51.84  Aligned_cols=114  Identities=15%  Similarity=-0.037  Sum_probs=64.8

Q ss_pred             CCCccccccchhHHHHHHHHhhhhh--hhhhhh-hHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhc---cccCCcccC
Q 026491           10 SYFFHLEMLDSWFQVGFVLTTGINS--AYVLGY-PGTVMVPLGWIAGVVGLIIATIVSLNANALIAKL---HEFGGKRHI   83 (238)
Q Consensus        10 ~~~~~~~~~~s~~~a~~~l~~~~iG--~GiLal-P~a~~~~~G~~~G~i~l~~~~~~~~yt~~lL~~~---~~~~~~~~~   83 (238)
                      +.+++-+|+-+.++...--. +.+|  .|+... +.+ .++.|-..-++..++.+++.......+.+.   .++.|    
T Consensus         5 g~~~~l~r~l~~~~~~~~~~-~~~~~~~g~~~~~~~~-~~~~Gp~~~i~~~~i~gi~~l~~~~~~aEl~s~~P~~G----   78 (482)
T TIGR00907         5 GYKPELKREFSLWSIFGFAF-SISNSWTGISTTYNYG-LSSGGAMSIVWGWIIAGAGSICIALSLAELSSAYPTSG----   78 (482)
T ss_pred             CCcceeecccchhHHHHHHH-HHHHHHHHHHHHHHHh-hhcCCccchhHHHHHHHHHHHHHHHHHHHHHhhCCCCc----
Confidence            34455667777776543333 3454  555433 345 667776444556666677776666666665   33323    


Q ss_pred             cHHHHHHHHcC----ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026491           84 RYRDLAGHIYG----RRAYALTWGLQYVNLFMINTGYIILAGQALKAAFV  129 (238)
Q Consensus        84 sY~~l~~~~~G----~~~~~~v~~~~~i~~~g~~v~yli~~~~~l~~~~~  129 (238)
                      ....-+++.+|    |...+++.....+.....+.+.....++.+...+.
T Consensus        79 g~y~~~~~~~g~~~g~~~~f~~gW~~~~~~~~~~a~~~~~~~~~~~~~~~  128 (482)
T TIGR00907        79 GQYFWSAKLAPPRQMPFASWMTGWFNLAGQVAGTASTDLSVAQLILGIVS  128 (482)
T ss_pred             cHHHHHHHhcccccccceeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            22333344555    55566766666666666666666666666665543

>PRK11017 codB cytosine permease; Provisional

Probab=97.20  E-value=0.098  Score=47.72  Aligned_cols=112  Identities=13%  Similarity=0.113  Sum_probs=66.4

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHhccccCCcccCcHHHHHHHHcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026491           48 LGWIAGVVGLIIATIVSLNANALIAKLHEFGGKRHIRYRDLAGHIYGRRAYALTWGLQYVNLFMINTGYIILAGQALKAA  127 (238)
Q Consensus        48 ~G~~~G~i~l~~~~~~~~yt~~lL~~~~~~~~~~~~sY~~l~~~~~G~~~~~~v~~~~~i~~~g~~v~yli~~~~~l~~~  127 (238)
                      +++...++.+++...+..--..+..+.-++.|   .++..+.|..||.+|..+..+...+..+|-......+.++.+++.
T Consensus        39 Ls~~~ai~aiilG~~i~~~~~~l~~~~G~k~G---~~~~v~sR~~FG~~Gs~l~~~~~~i~~igW~av~~~~~~~~l~~~  115 (404)
T PRK11017         39 LSFVDFLLAVLIGNLLLGIYTAALGYIGAKTG---LSTHLLARFSFGEKGSWLPSLLLGFTQVGWFGVGVAMFAIPVVKA  115 (404)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHhccC---cCHHHHHHHHhchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence            33334444444443333333333333323333   579999999999999998888888888888888777788776654


Q ss_pred             HHHHhcCCCCCCchhhHHHHHHHHHHHHhcCCChhhHHHHHHHHH
Q 026491          128 FVLFWKDDHTMKLPYFIAIAGFVCALFAIGIPNLSALGVWLGVST  172 (238)
Q Consensus       128 ~~~~~~~~~~~~~~~~iii~~~~~~lpl~~l~~l~~l~~~S~~~~  172 (238)
                      +.        .+...+.+++.++. .+..... .|.+++++.++.
T Consensus       116 ~~--------~~~~~~~~i~~~l~-~~~~~~G-~~~i~~~~~~~~  150 (404)
T PRK11017        116 TG--------LDINLLIVLSGLLM-TVTAYFG-ISALTILSRIAV  150 (404)
T ss_pred             hC--------CCHHHHHHHHHHHH-HHHHHHH-HHHHHHHHHHHH
Confidence            31        22233555555555 4554443 455555555554

>TIGR02358 thia_cytX probable hydroxymethylpyrimidine transporter CytX

Probab=97.20  E-value=0.11  Score=47.07  Aligned_cols=138  Identities=15%  Similarity=0.140  Sum_probs=87.3

Q ss_pred             hHHHHHHHHhhhhhhhhhhhhHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhccccCCcccCcHHHHHHHHcCccchhH
Q 026491           21 WFQVGFVLTTGINSAYVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKLHEFGGKRHIRYRDLAGHIYGRRAYAL  100 (238)
Q Consensus        21 ~~~a~~~l~~~~iG~GiLalP~a~~~~~G~~~G~i~l~~~~~~~~yt~~lL~~~~~~~~~~~~sY~~l~~~~~G~~~~~~  100 (238)
                      |....+|+.+-..|.....        +++...++.+++...+..--.-+....-++.|   .++.-+.|..||+++..+
T Consensus         7 W~~~~~~v~~~~~G~~l~~--------L~~~~ai~aiilG~~i~~~~~~l~~~~G~~~G---l~~~v~sR~~FG~~Gs~~   75 (386)
T TIGR02358         7 WFGAAISIAEIQTGALLAP--------LGLTRGLLAILLGHLVGVLLLSAAGVIGADTG---LSAMGSLKLSLGSKGSVL   75 (386)
T ss_pred             HHHHHhhHHHHHHHHHHHh--------ccHHHHHHHHHHHHHHHHHHHHHHHHhhcccC---cCHHHHHHHHHccchhhH
Confidence            5566666666666653211        33333444444443333333333333333333   479999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhcCCChhhHHHHHHHHHHH
Q 026491          101 TWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTMKLPYFIAIAGFVCALFAIGIPNLSALGVWLGVSTVL  174 (238)
Q Consensus       101 v~~~~~i~~~g~~v~yli~~~~~l~~~~~~~~~~~~~~~~~~~iii~~~~~~lpl~~l~~l~~l~~~S~~~~~~  174 (238)
                      ..+...+..+|--.......|+.++.+.+...+.   .....++++++++. ++... ...|.++++..++...
T Consensus        76 ~~~l~~i~~igW~~v~~~~gg~~l~~~~~~~~~~---~~~~~~~~i~~~l~-~~~~~-~G~~~i~~~~~~~~~~  144 (386)
T TIGR02358        76 PSLLNLLQLVGWTAVMIIVGAKAASLLGGRLFGE---ESPMLWILIVGILV-TLWLL-SGPLAFVWLNNWSVWL  144 (386)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---CchHHHHHHHHHHH-HHHHH-HHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999998754321   12234555655544 34443 4567777777777543

On the basis of a phylogenomic study of thiamine biosythetic, salvage, and transporter genes and a highly conserved RNA element THI, this protein family has been identified as a probable transporter of hydroxymethylpyrimidine (HMP), the phosphorylated (by ThiD) form of which gets joined (by ThiE) to hydroxyethylthiazole phosphate to make thiamine phosphate.

>PF02554 CstA: Carbon starvation protein CstA; InterPro: IPR003706 Escherichia coli induces the synthesis of at least 30 proteins at the onset of carbon starvation, two-thirds of which are positively regulated by the cyclic AMP (cAMP) and cAMP receptor protein (CRP) complex

Probab=97.15  E-value=0.025  Score=50.64  Aligned_cols=109  Identities=14%  Similarity=0.121  Sum_probs=83.3

Q ss_pred             CccccccchhHHHHHHHHhhhhhhhhhhhhHHhhhhhhhHHHHHHHHHHHH----HHHHHHHHHHhccccCCcccCcHHH
Q 026491           12 FFHLEMLDSWFQVGFVLTTGINSAYVLGYPGTVMVPLGWIAGVVGLIIATI----VSLNANALIAKLHEFGGKRHIRYRD   87 (238)
Q Consensus        12 ~~~~~~~~s~~~a~~~l~~~~iG~GiLalP~a~~~~~G~~~G~i~l~~~~~----~~~yt~~lL~~~~~~~~~~~~sY~~   87 (238)
                      ||.|.-..+.+...-|=..++-|+|-+-=|-. -++-||+++.+=+++.++    +-.|......-  ++.|   +|.+|
T Consensus        45 DGvDYvP~~~~vlfghhf~sIAGaGPI~GPi~-aa~~GwlPa~lWI~~G~if~GaVHD~~sl~~Sv--R~~G---~Si~~  118 (376)
T PF02554_consen   45 DGVDYVPTNKWVLFGHHFASIAGAGPIVGPIL-AAQFGWLPALLWIVFGCIFAGAVHDYGSLMASV--RHKG---KSIGE  118 (376)
T ss_pred             CCCCCCCCchHHhhHHHHHHHhccccchHHHH-HHHhcchHHHHHHHHccHHHHHHHHHHHHhhhh--cCCC---ccHHH
Confidence            44444455777788888889999999988988 799999988876665544    44454444321  2223   48999


Q ss_pred             HHHHHcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026491           88 LAGHIYGRRAYALTWGLQYVNLFMINTGYIILAGQALKA  126 (238)
Q Consensus        88 l~~~~~G~~~~~~v~~~~~i~~~g~~v~yli~~~~~l~~  126 (238)
                      ++++..||++|.+..++..+.++-...++....++.+..
T Consensus       119 i~~~~lG~~~~~lf~~f~~~~lilV~avF~~v~a~~~~~  157 (376)
T PF02554_consen  119 IAGKYLGKRAKKLFLIFIFFLLILVIAVFADVVANTFVN  157 (376)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            999999999999999999999988888888888877754

This family consists of carbon starvation protein CstA a predicted membrane protein. It has been suggested that CstA is involved in peptide utilization [].; GO: 0009267 cellular response to starvation, 0016020 membrane

>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism]

Probab=97.11  E-value=0.029  Score=52.43  Aligned_cols=203  Identities=13%  Similarity=0.066  Sum_probs=126.3

Q ss_pred             ccccchhHHHHHHHHhhhhhhhhh-hhhHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhccccCCcccCcHHHHHHHHc
Q 026491           15 LEMLDSWFQVGFVLTTGINSAYVL-GYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKLHEFGGKRHIRYRDLAGHIY   93 (238)
Q Consensus        15 ~~~~~s~~~a~~~l~~~~iG~GiL-alP~a~~~~~G~~~G~i~l~~~~~~~~yt~~lL~~~~~~~~~~~~sY~~l~~~~~   93 (238)
                      -+|+-..++-..--+...+|+|.+ +.-.+ .+++|-..-++.-++.+.+.+..+.-|.+...... ..-+|...+.+.-
T Consensus        42 lkR~LK~RHl~MIAiGG~IGTGLfvgsG~~-l~~aGP~g~li~y~i~G~~vy~vm~sLGEma~~~P-~sGsF~~ya~rfv  119 (541)
T COG0833          42 LKRSLKSRHLQMIAIGGAIGTGLFVGSGKA-LSQAGPAGLLIAYLIIGIMVYFVMQSLGELAVFYP-VSGSFSTYATRFV  119 (541)
T ss_pred             hhhhhhHHHHHHHHhccccccceeeecchh-hhccCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-CCCchhhhhhhhc
Confidence            345667777777788899999975 55667 99999988888899999999999999998732111 1235888888888


Q ss_pred             CccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhc--CCChhhHHH-HHHH
Q 026491           94 GRRAYALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTMKLPYFIAIAGFVCALFAIG--IPNLSALGV-WLGV  170 (238)
Q Consensus        94 G~~~~~~v~~~~~i~~~g~~v~yli~~~~~l~~~~~~~~~~~~~~~~~~~iii~~~~~~lpl~~--l~~l~~l~~-~S~~  170 (238)
                      +|-....+.....+.-.-+.-.-++.++..++.+++     + ..+...|+.++.+++ +.+..  .|.+.+.-+ +|.+
T Consensus       120 dpa~GFa~gWnYw~~w~v~~~~El~aa~~vi~yW~p-----~-~v~~~~w~~iF~~~i-~~iN~~~Vk~fGE~Efw~s~i  192 (541)
T COG0833         120 DPAFGFALGWNYWLNWAVTLPLELTAASLVIQYWFP-----D-TVPPWIWIAIFLVLI-FLLNLFGVKGFGETEFWFSSI  192 (541)
T ss_pred             CchHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhcC-----C-CCChHHHHHHHHHHH-HHHHHhcccccceehHHHHHH
Confidence            887666666666665555556666667766665542     1 245568888877766 34433  356666544 5555


Q ss_pred             HHHHHHHHHHHHHHHHhhcCCCC-CCCcCCC---CCCcchhhhhhHhHHHHHHHHh-ccCch
Q 026491          171 STVLSTIYIVIAIWLSVRDGLKN-PARDYSI---PGTTATKIFESIGACANLVFAF-NTGML  227 (238)
Q Consensus       171 ~~~~~~~~~~i~~~~~i~~~~~~-~~~~~~~---~~~~~~~~~~~~~a~gi~~Faf-g~~v~  227 (238)
                      =++..+.+.++.++ .+.-+.++ +....+.   ++.-...+-++...+-+..|+| |..++
T Consensus       193 KV~~ii~Fii~gii-~~~Gg~~~~~~ig~~yw~~pg~F~~gf~g~~~v~v~a~Fsf~GtElv  253 (541)
T COG0833         193 KVLTIIGFIILGII-IICGGGPTHGYIGFNYWHDPGAFAGGFKGFCSVFVIAAFSFSGTELV  253 (541)
T ss_pred             HHHHHHHHHHHHHH-HhcCCCCCCCCcceeeecCCCCCCcchHHHHHHHhhheeeeeceeee
Confidence            55554444433322 22222221 1111111   1111223556677788888999 45433

>PRK15238 inner membrane transporter YjeM; Provisional

Probab=97.07  E-value=0.23  Score=46.42  Aligned_cols=81  Identities=11%  Similarity=0.035  Sum_probs=47.8

Q ss_pred             cccchhHHHHHHHHhhhhhhhhhhhhHHhhhhhhhHHHHHHHHHHHHHHH----HHHHHHHhcccc-CCcccCcHHHHHH
Q 026491           16 EMLDSWFQVGFVLTTGINSAYVLGYPGTVMVPLGWIAGVVGLIIATIVSL----NANALIAKLHEF-GGKRHIRYRDLAG   90 (238)
Q Consensus        16 ~~~~s~~~a~~~l~~~~iG~GiLalP~a~~~~~G~~~G~i~l~~~~~~~~----yt~~lL~~~~~~-~~~~~~sY~~l~~   90 (238)
                      +||-++++...-.+.+++|.+  .+|.+ +++.|.. .++..++.+++..    .+.--|...+++ .|    .--.-.+
T Consensus         6 ~~~l~~~~l~~~~~~~vig~~--~~~~~-~~~~G~~-~i~~~~i~~~~~~l~~al~~aEL~s~~P~~aG----G~Y~w~~   77 (496)
T PRK15238          6 KKKLSLIGLILMIFTSVFGFA--NSPRA-FYLMGYS-AIPWYILSAILFFIPFALMMAEYGSAFKDEKG----GIYSWMN   77 (496)
T ss_pred             cCeeeHHHHHHHHHHHHHhCC--chHHH-HHHcChH-HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC----cHHHHHH
Confidence            567899998888889999876  56887 8888863 4444444443322    222233333332 23    2233455


Q ss_pred             HHcCccchhHHHHH
Q 026491           91 HIYGRRAYALTWGL  104 (238)
Q Consensus        91 ~~~G~~~~~~v~~~  104 (238)
                      +++||+..++....
T Consensus        78 ~~~G~~~gf~~~w~   91 (496)
T PRK15238         78 KSVGPKFAFIGTFM   91 (496)
T ss_pred             HHcCchHHHHHHHH
Confidence            66999877654433

>PRK11375 allantoin permease; Provisional

Probab=97.04  E-value=0.28  Score=45.88  Aligned_cols=144  Identities=13%  Similarity=0.067  Sum_probs=84.2

Q ss_pred             hHHHHHHHHhhhhhhhhhhhhHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhccccCCcccCcHHHHHHHHcCccchhH
Q 026491           21 WFQVGFVLTTGINSAYVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKLHEFGGKRHIRYRDLAGHIYGRRAYAL  100 (238)
Q Consensus        21 ~~~a~~~l~~~~iG~GiLalP~a~~~~~G~~~G~i~l~~~~~~~~yt~~lL~~~~~~~~~~~~sY~~l~~~~~G~~~~~~  100 (238)
                      |....+|+.+-..+.|.+++      .+++...++.+++...+..--+.+..+.-.+.|   .++.-+.|..||.+|..+
T Consensus        36 W~g~~~~i~~~~~~g~~l~~------GLs~~~ai~ai~lG~~i~~~~~~l~g~~G~~~G---l~~~v~sR~sFG~~Gs~l  106 (484)
T PRK11375         36 WMGSVHNVPNYVMVGGFFIL------GLSTFSIMLAIILSAFFIAAVMVLNGAAGSKYG---VPFAMILRASYGVRGALF  106 (484)
T ss_pred             HHHHhccHHHHHHHHHHHHc------cchHHHHHHHHHHHHHHHHHHHHHhcccccccC---CChhHhHHHHHccccchH
Confidence            44455555554344444432      233444555555554444444444444333333   579999999999999888


Q ss_pred             HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhcC-----CC----CCCchhhHH--HHHHHHHHHHhcCCChhhHHHHH
Q 026491          101 TWGLQY-VNLFMINTGYIILAGQALKAAFVLFWKD-----DH----TMKLPYFIA--IAGFVCALFAIGIPNLSALGVWL  168 (238)
Q Consensus       101 v~~~~~-i~~~g~~v~yli~~~~~l~~~~~~~~~~-----~~----~~~~~~~ii--i~~~~~~lpl~~l~~l~~l~~~S  168 (238)
                      ..+... +..+|--.....+.|+.+..+.+...+.     ++    ......++.  ++.++. ++.. ....|.+++++
T Consensus       107 ~~~~rai~~~igW~~vqt~~~g~al~~~l~~i~~~~~~~~~~~~~~g~~~~~~i~~~i~~~l~-~~~~-~~g~~~i~~l~  184 (484)
T PRK11375        107 PGLLRGGIAAIMWFGLQCYAGSLALLILIGKIWPGFLTLGGDFTLLGLSLPGLITFLIFWLVN-VGIG-FGGGKVLNKFT  184 (484)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCCcHHHHHHHHHHHHHH-HHHH-HcCHHHHHHHH
Confidence            888874 5778888889999999998877654321     10    112222222  333333 4553 45677787777


Q ss_pred             HHHHHHH
Q 026491          169 GVSTVLS  175 (238)
Q Consensus       169 ~~~~~~~  175 (238)
                      .++....
T Consensus       185 ~i~~p~~  191 (484)
T PRK11375        185 AILNPCI  191 (484)
T ss_pred             HHHHHHH
Confidence            7775433

>COG3949 Uncharacterized membrane protein [Function unknown]

Probab=97.03  E-value=0.013  Score=51.56  Aligned_cols=102  Identities=17%  Similarity=0.175  Sum_probs=77.1

Q ss_pred             HHHHHHHhhhhhhhhhh---hhHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhccccCCcccCcHHHHHHHHcCccchh
Q 026491           23 QVGFVLTTGINSAYVLG---YPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKLHEFGGKRHIRYRDLAGHIYGRRAYA   99 (238)
Q Consensus        23 ~a~~~l~~~~iG~GiLa---lP~a~~~~~G~~~G~i~l~~~~~~~~yt~~lL~~~~~~~~~~~~sY~~l~~~~~G~~~~~   99 (238)
                      +-.|-.+.+++|+|-=+   .=.- |..-|| .|...+++++.+-..++.++.+...+-+  ..+|+|+-++.+||+...
T Consensus         7 ~~~f~~ig~~vGAGfAsGqEi~QF-F~~~G~-~s~~gIivs~vlf~~~g~vim~ig~~f~--a~~y~~~~~~v~~~~~~k   82 (349)
T COG3949           7 RWAFAFIGTVVGAGFASGQEIMQF-FGKYGV-YSILGIILSTVLFTLSGAVIMTIGKKFN--ATSYREILKYVSGPKFAK   82 (349)
T ss_pred             HHHHHHHHHhhcccccchHHHHHH-HHHhhh-hhhHHHHHHHHHHHHHHHHHHHHHHHhc--ccchHHHHHHHhhHHHHH
Confidence            34455566788887533   1113 456676 5777888888888888888877643322  358999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026491          100 LTWGLQYVNLFMINTGYIILAGQALKAAF  128 (238)
Q Consensus       100 ~v~~~~~i~~~g~~v~yli~~~~~l~~~~  128 (238)
                      +.+..+...+++++++-+--.|.++++.+
T Consensus        83 i~d~~iif~lf~~~vVM~AGags~~~e~~  111 (349)
T COG3949          83 IIDIIIIFFLFSTAVVMLAGAGSLLEEMF  111 (349)
T ss_pred             HHHHHHHHHHHHHHHHHhccchhHHHHHh
Confidence            99999999999999998888888887765

>PF02133 Transp_cyt_pur: Permease for cytosine/purines, uracil, thiamine, allantoin; InterPro: IPR001248 The Nucleobase Cation Symporter-1 (NCS1) family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines

Probab=97.02  E-value=0.016  Score=53.26  Aligned_cols=81  Identities=20%  Similarity=0.217  Sum_probs=55.8

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHhccccCCcccCcHHHHHHHHcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026491           48 LGWIAGVVGLIIATIVSLNANALIAKLHEFGGKRHIRYRDLAGHIYGRRAYALTWGLQYVNLFMINTGYIILAGQALKAA  127 (238)
Q Consensus        48 ~G~~~G~i~l~~~~~~~~yt~~lL~~~~~~~~~~~~sY~~l~~~~~G~~~~~~v~~~~~i~~~g~~v~yli~~~~~l~~~  127 (238)
                      +++..+++.+++..++..--.-+....-.+.|   .++..+.|..||.++..+..+...+.++|-...-..+.|+.+..+
T Consensus        39 L~~~~ailai~~G~~l~~i~~~~~~~~G~r~G---l~~~v~sR~~FG~~Gs~l~~~l~~i~~igW~av~~~~~g~al~~~  115 (440)
T PF02133_consen   39 LSFWQAILAILIGNLLGAILVALMGIIGPRTG---LPTMVLSRASFGYRGSKLPSLLRAISAIGWFAVNTWLGGQALAAL  115 (440)
T ss_dssp             S-HHHHHHHHHHHHHHHHHHHHHHTHHHHCC------HHHHTTTTS-TTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHhcccccccC---CCchhcchhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444555555544444333334444333444   468999999999999999999999999999999999999999998


Q ss_pred             HHHH
Q 026491          128 FVLF  131 (238)
Q Consensus       128 ~~~~  131 (238)
                      .+..
T Consensus       116 ~~~~  119 (440)
T PF02133_consen  116 LGII  119 (440)
T ss_dssp             HHCC
T ss_pred             hhhh
Confidence            8743

Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.; GO: 0015205 nucleobase transmembrane transporter activity, 0015851 nucleobase transport, 0016020 membrane; PDB: 2JLN_A 2JLO_A.

>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism]

Probab=96.96  E-value=0.098  Score=48.18  Aligned_cols=77  Identities=18%  Similarity=0.095  Sum_probs=53.7

Q ss_pred             HHHHHHHcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhcCCChhhHH
Q 026491           86 RDLAGHIYGRRAYALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTMKLPYFIAIAGFVCALFAIGIPNLSALG  165 (238)
Q Consensus        86 ~~l~~~~~G~~~~~~v~~~~~i~~~g~~v~yli~~~~~l~~~~~~~~~~~~~~~~~~~iii~~~~~~lpl~~l~~l~~l~  165 (238)
                      -.++|..||.++.++.++.+.+.++|...+-.+..|+....        ....+...|+++.++++ +..... -.|.+.
T Consensus        84 mi~sR~~fG~~Gs~l~sll~~~~~iGW~~v~~~l~~~a~~~--------~~~~~~~~~ili~g~l~-~l~~if-G~r~l~  153 (442)
T COG1457          84 MILSRYPFGVKGSILPSLLNGITLIGWFGVNVILSGIAIGS--------GTGLPVWAGILIIGVLM-TLVTIF-GYRALH  153 (442)
T ss_pred             heeecccccchhHHHHHHHHHHHHhhHHHHHHHHhcccccc--------CCCCcHHHHHHHHHHHH-HHHHHH-hHHHHH
Confidence            35788899999999999999999999999999999997211        12344556777777665 344333 234444


Q ss_pred             HHHHHHH
Q 026491          166 VWLGVST  172 (238)
Q Consensus       166 ~~S~~~~  172 (238)
                      .++.++.
T Consensus       154 ~l~~~a~  160 (442)
T COG1457         154 KLERIAV  160 (442)
T ss_pred             HHHHHHH
Confidence            4444443

>TIGR00835 agcS amino acid carrier protein

Probab=96.69  E-value=0.2  Score=46.02  Aligned_cols=83  Identities=13%  Similarity=-0.030  Sum_probs=53.3

Q ss_pred             ccchhHHHHHHHHhhhhhhh-hhhhhHHhhhhhhhHHHH----HHHHHHHHHHHHHHHHHHhc-cccCCcccCcH-----
Q 026491           17 MLDSWFQVGFVLTTGINSAY-VLGYPGTVMVPLGWIAGV----VGLIIATIVSLNANALIAKL-HEFGGKRHIRY-----   85 (238)
Q Consensus        17 ~~~s~~~a~~~l~~~~iG~G-iLalP~a~~~~~G~~~G~----i~l~~~~~~~~yt~~lL~~~-~~~~~~~~~sY-----   85 (238)
                      ++-|-+|+.+-...+.+|+| |+++|.| .+..|  +|-    -...+.+..+-|.-..|..- .++++  ..+|     
T Consensus        45 g~iS~fqA~~~ala~~VG~GnI~Gva~A-i~~GG--pGAvFWMWI~allGm~~~~~e~~L~~~yr~~~~--~g~~~GGP~  119 (425)
T TIGR00835        45 GGVSSFQALFTSLAARVGIGNIVGVATA-IAIGG--PGAVFWMWVTAFIGMATKFVESTLAQKYRERDA--DGVFRGGPM  119 (425)
T ss_pred             CCccHHHHHHHHHHHHHhhhHHHHHHHH-HHhcC--CCchHHHHHHHHHHHHHHHHHHHHHHHeeeeCC--CCCEecChH
Confidence            34689999999999999998 9999999 88887  343    23333333444444333333 22222  1236     


Q ss_pred             HHHHHHHcCccchhHHHHH
Q 026491           86 RDLAGHIYGRRAYALTWGL  104 (238)
Q Consensus        86 ~~l~~~~~G~~~~~~v~~~  104 (238)
                      -++-+...|||...+..++
T Consensus       120 yyi~~gl~~k~lg~lfa~~  138 (425)
T TIGR00835       120 YYIKKGLGMRWLAVLFAVF  138 (425)
T ss_pred             HHHHHHhCccHHHHHHHHH
Confidence            7888887788765555554

Members of the AGCS family transport alanine and/or glycine in symport with Na+ and or H+.

>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell

Probab=96.65  E-value=0.016  Score=53.69  Aligned_cols=97  Identities=14%  Similarity=0.012  Sum_probs=61.3

Q ss_pred             hhhhhhhhhhhhHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhccccCCcccCcHHHHHHHHcCccchhHHHHHHHHHH
Q 026491           30 TGINSAYVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKLHEFGGKRHIRYRDLAGHIYGRRAYALTWGLQYVNL  109 (238)
Q Consensus        30 ~~~iG~GiLalP~a~~~~~G~~~G~i~l~~~~~~~~yt~~lL~~~~~~~~~~~~sY~~l~~~~~G~~~~~~v~~~~~i~~  109 (238)
                      ..++|+|++.-...+..+.|....++..++.+++...++.-+.+...+.. +.-++-+.+++.+||.....+.....+..
T Consensus         8 g~~ig~g~f~~~g~~~~~~G~~~~~la~li~~i~~~~~~~~~~ems~~~p-~~Gg~y~y~~~~lg~~~Gf~~gw~y~~~~   86 (478)
T PF00324_consen    8 GGIIGTGLFLGSGFAIAAAGPGGAPLAYLIAGIIVLLVALSLAEMSRRFP-SAGGFYAYASRGLGPALGFAAGWAYWLSY   86 (478)
T ss_pred             HHHHHHHHHHHHHHHHHhcccccchhHhHHHHHHHHhhhhhhhhhhhhhc-cccchhhhhhhccCCcCCceeeHHHHHHH
Confidence            45677777654443388888866677777777777777777766633111 12256677778899987766666655555


Q ss_pred             HHHHHHHHHHHHHHHHHH
Q 026491          110 FMINTGYIILAGQALKAA  127 (238)
Q Consensus       110 ~g~~v~yli~~~~~l~~~  127 (238)
                      .-.........+..++..
T Consensus        87 ~~~~~~~~~~~~~~~~~~  104 (478)
T PF00324_consen   87 IAAIAAEATAAGSFLQFW  104 (478)
T ss_pred             HHHHHhhhhhhhhhhccc
Confidence            555555555555555443

A number of such proteins have been found to be evolutionary related [], [], []. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. This domain is found in a wide variety of permeases, as well as several hypothetical proteins. ; GO: 0006810 transport, 0055085 transmembrane transport, 0016020 membrane

>TIGR02119 panF sodium/pantothenate symporter

Probab=96.28  E-value=0.73  Score=42.76  Aligned_cols=149  Identities=13%  Similarity=0.062  Sum_probs=93.8

Q ss_pred             cccchhHHHHHHHHhhhhhh-hhhhhhHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHh----ccccCCcccCcHHHHHH
Q 026491           16 EMLDSWFQVGFVLTTGINSA-YVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAK----LHEFGGKRHIRYRDLAG   90 (238)
Q Consensus        16 ~~~~s~~~a~~~l~~~~iG~-GiLalP~a~~~~~G~~~G~i~l~~~~~~~~yt~~lL~~----~~~~~~~~~~sY~~l~~   90 (238)
                      .|+-+++.....+..+.+|+ ..++.|-. .-+-|+.+....... ..+.+.....+.+    ..++.  +..|.+|.-+
T Consensus        39 gr~l~~~~~~~s~~at~~s~~t~~g~~g~-~y~~G~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~T~~e~l~  114 (471)
T TIGR02119        39 GRSMGGFVLAMTLVATYGSASSFIGGPGI-AYNYGLGWVLLAMIQ-VPTGYFVLGVLGKKFAIISRKY--NAITINDVLK  114 (471)
T ss_pred             CCcccHHHHHHHHHHHHhhHHHHcCcHHH-HHHhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHc--CCccHHHHHH
Confidence            46668888888888888877 45677776 566676421111110 0111222222222    12222  3568999999


Q ss_pred             HHcCccc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhcCCChhhHHHHHH
Q 026491           91 HIYGRRA-YALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTMKLPYFIAIAGFVCALFAIGIPNLSALGVWLG  169 (238)
Q Consensus        91 ~~~G~~~-~~~v~~~~~i~~~g~~v~yli~~~~~l~~~~~~~~~~~~~~~~~~~iii~~~~~~lpl~~l~~l~~l~~~S~  169 (238)
                      +-||++. +++..+...+.+++..++.+...|..++.+++        ++...-+++.++++ +.-....-++...++..
T Consensus       115 ~Ryg~~~~~~~~~i~~i~~~~~~~~~ql~g~g~~l~~~~g--------i~~~~~iii~~~iv-~iYt~~GG~~av~~td~  185 (471)
T TIGR02119       115 ARYNNKFLVWLSSISLLVFFFSAMVAQFIGGARLIESLTG--------LSYLTALFIFSSSV-LIYTTFGGFRAVALTDA  185 (471)
T ss_pred             HHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------CCHHHHHHHHHHHH-HHHHHhhhHHHHHHHHH
Confidence            9999664 77788888888888888888888888877642        33334445554444 56667889999999888


Q ss_pred             HHHHHHHH
Q 026491          170 VSTVLSTI  177 (238)
Q Consensus       170 ~~~~~~~~  177 (238)
                      +=.+..+.
T Consensus       186 iQ~~v~~~  193 (471)
T TIGR02119       186 IQGIVMFT  193 (471)
T ss_pred             HHHHHHHH
Confidence            87544333

Pantothenate (vitamin B5) is a precursor of coenzyme A and is made from aspartate and 2-oxoisovalerate in most bacteria with completed genome sequences. However, some pathogens must import pantothenate. This model describes PanF, a sodium/pantothenate symporter, from a larger family of Sodium/substrate symporters (pfam00474). Several species that have this transporter appear to lack all enzymes of pantothenate biosynthesis, namely Haemophilus influenzae, Pasteurella multocida, Fusobacterium nucleatum, and Borrelia burgdorferi.

>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter

Probab=96.27  E-value=0.59  Score=43.93  Aligned_cols=82  Identities=15%  Similarity=0.075  Sum_probs=44.0

Q ss_pred             cccchhHHHHHHHHhhhhhhhhhhhhHHhhhhhhhHHHHHHHHHHHHHHHH--HHHHHHhc---cc-cCCcccCcHHHHH
Q 026491           16 EMLDSWFQVGFVLTTGINSAYVLGYPGTVMVPLGWIAGVVGLIIATIVSLN--ANALIAKL---HE-FGGKRHIRYRDLA   89 (238)
Q Consensus        16 ~~~~s~~~a~~~l~~~~iG~GiLalP~a~~~~~G~~~G~i~l~~~~~~~~y--t~~lL~~~---~~-~~~~~~~sY~~l~   89 (238)
                      ++|-+.++-+.-.+.++.  ++-.+| + +++.|+  +.+...+.+.+.+.  ......+.   .+ +.|    ..-.-+
T Consensus         3 ~~~l~~~~~~~~~~~~v~--~~~~~~-~-~a~~G~--~~i~~~i~~~l~~~lp~al~~AELas~~p~~~G----G~y~wv   72 (507)
T TIGR00910         3 AKKLSLFGFFAITASMVL--AVYEYP-T-FATSGF--HLVFFLLLGGILWFIPVALCAAEMATVDGWEEG----GIFAWV   72 (507)
T ss_pred             CcEeeHHHHHHHHHHHHH--HHHhhH-H-HHHhhH--HHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCC----Ceeeeh
Confidence            345666655544444444  667888 5 789895  44445555444433  34444443   21 222    233445


Q ss_pred             HHHcCccchhHHHHHHHH
Q 026491           90 GHIYGRRAYALTWGLQYV  107 (238)
Q Consensus        90 ~~~~G~~~~~~v~~~~~i  107 (238)
                      ++++||+...+....+-+
T Consensus        73 ~~a~G~~~Gf~~~~~~W~   90 (507)
T TIGR00910        73 SNTLGERFGFAAIFFGWF   90 (507)
T ss_pred             hhccCccHHHHHHHHHHH
Confidence            777999876655444333

Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009

>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells

Probab=96.03  E-value=0.38  Score=43.56  Aligned_cols=149  Identities=20%  Similarity=0.171  Sum_probs=85.2

Q ss_pred             cccchhHHHHHHHHhhhhhh-hhhhhhHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhccccCCcccCcHHHHHHHHcC
Q 026491           16 EMLDSWFQVGFVLTTGINSA-YVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKLHEFGGKRHIRYRDLAGHIYG   94 (238)
Q Consensus        16 ~~~~s~~~a~~~l~~~~iG~-GiLalP~a~~~~~G~~~G~i~l~~~~~~~~yt~~lL~~~~~~~~~~~~sY~~l~~~~~G   94 (238)
                      .|+-+++...+.+..+.+|+ ..++.|-. .-+-|+. +....+............+.+...+.  +..|.+|.-++-||
T Consensus         5 gr~~~~~~~~~s~~at~~s~~t~~G~~g~-~y~~G~~-~~~~~~~~~~~~~~~~~~~~~~~r~~--~~~T~~e~~~~Ryg   80 (406)
T PF00474_consen    5 GRSLGWWVVAFSLVATWISAWTFIGFPGF-AYSYGIS-GLWYAIGYAIGFLLFALFFAPRLRRS--GAVTIPEYLEKRYG   80 (406)
T ss_dssp             -S---HHHHHHHHHHHHSSHHHHTHHHHH-HHHT-GG-GGHHHHHHHHHHHHHHHHTHHHHHHT--T--SHHHHHHHHT-
T ss_pred             CCCCcHHHHHHHHHHHHHHHHHHHHHHHH-hhcCCcc-eeeeccccchhHHHHHHHHHHhhccc--chhhhhhhhhhhcC
Confidence            35667888888888877776 67788887 6677874 33333333333333334444433332  35689999999999


Q ss_pred             ccc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhcCCChhhHHHHHHHHH
Q 026491           95 RRA--YALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTMKLPYFIAIAGFVCALFAIGIPNLSALGVWLGVST  172 (238)
Q Consensus        95 ~~~--~~~v~~~~~i~~~g~~v~yli~~~~~l~~~~~~~~~~~~~~~~~~~iii~~~~~~lpl~~l~~l~~l~~~S~~~~  172 (238)
                      ++.  +.+..+..++..+......+...|..++.++.        ++...-+++.+++. +.-...--++...++..+-.
T Consensus        81 ~~~~~~~~~~i~~i~~~~~~~~~q~~~~~~~~~~~~g--------i~~~~~~~i~~~i~-~iYt~~GGl~av~~td~iQ~  151 (406)
T PF00474_consen   81 SKALLRILAAIIIIVFMIPYLAAQLVGGGALLSVLFG--------IPYNTAILIVGVIV-IIYTFFGGLRAVAWTDFIQG  151 (406)
T ss_dssp             HHH-HHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT----------HHHHHHHHHHHH-HHTTCTT------SHHHHHH
T ss_pred             Cchhhhhhcccccchhhhhhhhccccccccchhhccc--------hhhhHHHHHHHHHH-HHhhhhhhHhhhhHHHHHHH
Confidence            988  66655656666677777777778877776642        34444455555555 56777888888888887775


Q ss_pred             HHHHH
Q 026491          173 VLSTI  177 (238)
Q Consensus       173 ~~~~~  177 (238)
                      +..+.
T Consensus       152 ~i~~~  156 (406)
T PF00474_consen  152 VIMII  156 (406)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            44433

Thereby the energy stored in an inwardly directed electrochemical sodium gradient (sodium motive force, SMF) is used to drive solute accumulation against a concentration gradient. The SMF is generated by primary sodium pumps (e.g. sodium/potassium ATPases, sodium translocating respiratory chain complexes) or via the action of sodium/proton antiporters. Sodium/substrate transporters are grouped in different families based on sequence similarities [, ]. One of these families, known as the sodium:solute symporter family (SSSF), contains over a hundred members of pro- and eukaryotic origin []. The average hydropathy plot for SSSF proteins predicts 11 to 15 putative transmembrane domains (TMs) in alpha-helical conformation. A secondary structure model of PutP from Escherichia coli suggests the protein contains 13 TMs with the N terminus located on the periplasmic side of the membrane and the C terminus facing the cytoplasm. The results support the idea of a common topological motif for members of the SSSF. Transporters with a C-terminal extension are proposed to have an additional 14th TM. An ordered binding model of sodium/substrate transport suggests that sodium binds to the empty transporter first, thereby inducing a conformational alteration which increases the affinity of the transporter for the solute. The formation of the ternary complex induces another structural change that exposes sodium and substrate to the other site of the membrane. Substrate and sodium are released and the empty transporter re-orientates in the membrane allowing the cycle to start again.; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3DH4_D 2XQ2_A.

>KOG1286 consensus Amino acid transporters [Amino acid transport and metabolism]

Probab=95.95  E-value=0.033  Score=52.84  Aligned_cols=222  Identities=11%  Similarity=0.002  Sum_probs=115.9

Q ss_pred             ccccchhHHHHHHHHhhhhhhhhhhhhHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhccccCCcccCcHHHHHHHHcC
Q 026491           15 LEMLDSWFQVGFVLTTGINSAYVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKLHEFGGKRHIRYRDLAGHIYG   94 (238)
Q Consensus        15 ~~~~~s~~~a~~~l~~~~iG~GiLalP~a~~~~~G~~~G~i~l~~~~~~~~yt~~lL~~~~~~~~~~~~sY~~l~~~~~G   94 (238)
                      -+|+.++++-..-=+.+.+|+|++-.-..+.++.|-..-++..++.+...+.+..-+.+...+..+..-++---+.+..|
T Consensus        28 lkR~L~~rhl~miaiGg~IGtGl~V~sG~~l~~~gp~s~iisf~i~g~~~~~~~~~~~E~~~~~P~~aGs~~~ya~~~i~  107 (554)
T KOG1286|consen   28 LKRCLKTRHLQMLAIGGTIGTGLFVGTGSALRNGGPPSLLISFIIAGIAALLSALCLGEFAVRFPVSAGSFYTYAYRFVG  107 (554)
T ss_pred             hhccCCcccEEEEEecceeccceEEeccHHHhccCChhHHHHHHHHHHHHHHHHHHHHHHheecccccccceeeeeeeeC
Confidence            34556777766666778999999866655488888766666677777777777777777632111100123334455577


Q ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhcCCCCCCchhhHHHHHHHH-HHHHhcCCChhhHHHHHHHH
Q 026491           95 RRAYALTWGLQYVNLFMINTGYIILAGQALKAAFV--LFWKDDHTMKLPYFIAIAGFVC-ALFAIGIPNLSALGVWLGVS  171 (238)
Q Consensus        95 ~~~~~~v~~~~~i~~~g~~v~yli~~~~~l~~~~~--~~~~~~~~~~~~~~iii~~~~~-~lpl~~l~~l~~l~~~S~~~  171 (238)
                      |-...++.....++-+-.+-+-+...+..++.+..  .........+.-.|+.++.++. ++.+...+-+-+.++.+.+.
T Consensus       108 e~~aF~~gWny~l~y~i~~a~e~~a~s~~~~~w~~~~~~~~~~~~~~~~~~~~~fla~~v~in~~gv~~~ge~ef~~~~~  187 (554)
T KOG1286|consen  108 ESLAFAIGWNYLLEYVIGLAAEARAWSSYLDYWTGASLIGILVDTVNPGGWIPDFLAFILIINLFGVLAYGEVEFSLAFN  187 (554)
T ss_pred             cHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhccccccccccCCCCCccHHHHHHHHHHHHHHHHhhccceeehHHHH
Confidence            87766777666666655555666666666665540  0000001122234444433333 23333445445555555554


Q ss_pred             HHHHHHHHHHHHHHHhhcC-CCCCCCcCCC------CC-CcchhhhhhHhHHHHHHHHh-ccCchhhhhhcccCC
Q 026491          172 TVLSTIYIVIAIWLSVRDG-LKNPARDYSI------PG-TTATKIFESIGACANLVFAF-NTGMLPEIQVREEFR  237 (238)
Q Consensus       172 ~~~~~~~~~i~~~~~i~~~-~~~~~~~~~~------~~-~~~~~~~~~~~a~gi~~Faf-g~~v~p~I~~~M~~~  237 (238)
                      -+.+.+-.++.. ..+.-| .++...++.-      ++ .....+-+++.++-+..|+| |.-.+-.--+|-|+|
T Consensus       188 kvl~~v~~~Il~-iVi~~G~~~~d~~~~ig~~y~~~~g~F~p~gf~Gv~s~~~~~~fsf~G~e~va~~a~E~kNP  261 (554)
T KOG1286|consen  188 KILTAVGFIILA-IVIIAGGGPADVKNWIGFRYWHDPGAFFPFGFKGVLSGAATAFFSFIGFELVATTAEEAKNP  261 (554)
T ss_pred             HHHHHHHHHHhh-eeeecCCCcCCcCCCcCccccCCCCCcCCCCcceeeHHHHHHHHHHhhHHHHHHHHHhccCC
Confidence            333322222211 112222 2111111111      11 11112456778899999999 566665556666665

>TIGR00813 sss transporter, SSS family

Probab=95.88  E-value=1  Score=40.83  Aligned_cols=148  Identities=14%  Similarity=0.079  Sum_probs=93.4

Q ss_pred             cccchhHHHHHHHHhhhhhh-hhhhhhHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhccccCCcccCcHHHHHHHHcC
Q 026491           16 EMLDSWFQVGFVLTTGINSA-YVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKLHEFGGKRHIRYRDLAGHIYG   94 (238)
Q Consensus        16 ~~~~s~~~a~~~l~~~~iG~-GiLalP~a~~~~~G~~~G~i~l~~~~~~~~yt~~lL~~~~~~~~~~~~sY~~l~~~~~G   94 (238)
                      .|+-+++...+.+..+.+++ ..++.|.. .-+-|+. +...............++..+..++.  +..|.+|.-+.-||
T Consensus         2 gr~~~~~~~~~s~~at~~s~~t~ig~~~~-~y~~G~~-~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~T~~e~l~~Ryg   77 (407)
T TIGR00813         2 GRSLGGWVVAASLFASYISASQFLGLPGA-IYAYGFA-IGFYELGALVLLIILGWLFVPIFINN--GAYTMPEYLEKRFG   77 (407)
T ss_pred             CCCCCcHHHHHHHHHHHhhHHHHhcCcHH-HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHc--CCCchhHHHHHHhC
Confidence            35667777777777666665 67788877 5566753 32222222222222333333332222  35789999999999


Q ss_pred             cc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhcCCChhhHHHHHHHHHH
Q 026491           95 RR-AYALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTMKLPYFIAIAGFVCALFAIGIPNLSALGVWLGVSTV  173 (238)
Q Consensus        95 ~~-~~~~v~~~~~i~~~g~~v~yli~~~~~l~~~~~~~~~~~~~~~~~~~iii~~~~~~lpl~~l~~l~~l~~~S~~~~~  173 (238)
                      ++ .|.+..+...+..+......+...|..++.+++        ++...-+++.++++ +.-...--++...++..+=.+
T Consensus        78 ~~~~~~~~~~~~i~~~~~~~~~q~~g~~~il~~~~g--------i~~~~~~ii~~~i~-~~Yt~~GG~~av~~Td~iQ~~  148 (407)
T TIGR00813        78 KRILRGLSVLSLILYIFLYMSVDLFSGALLIELITG--------LDLYLSLLLLGAIT-ILYTVFGGLKAVVWTDTIQAV  148 (407)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------chHHHHHHHHHHHH-HHHHHHcchHHHHHHHHHHHH
Confidence            85 566667777788888888888888888887642        22233344444444 466677889999888888755


Q ss_pred             HHH
Q 026491          174 LST  176 (238)
Q Consensus       174 ~~~  176 (238)
                      ..+
T Consensus       149 i~~  151 (407)
T TIGR00813       149 IMI  151 (407)
T ss_pred             HHH
Confidence            433

have different numbers of TMSs. A 13 TMS topology with a periplasmic N-terminus and a cytoplasmic C-terminus has been experimentally determined for the proline:Na+ symporter, PutP, of E. coli.

>PRK15015 carbon starvation protein A; Provisional

Probab=95.86  E-value=0.24  Score=47.58  Aligned_cols=108  Identities=13%  Similarity=0.025  Sum_probs=77.1

Q ss_pred             CccccccchhHHHHHHHHhhhhhhhhhhhhHHhhhhhhhHHHHHHHHHHHHHH----HHHHHHHHhccccCCcccCcHHH
Q 026491           12 FFHLEMLDSWFQVGFVLTTGINSAYVLGYPGTVMVPLGWIAGVVGLIIATIVS----LNANALIAKLHEFGGKRHIRYRD   87 (238)
Q Consensus        12 ~~~~~~~~s~~~a~~~l~~~~iG~GiLalP~a~~~~~G~~~G~i~l~~~~~~~----~yt~~lL~~~~~~~~~~~~sY~~   87 (238)
                      ||.++-..+-+--.-|=+.++-|+|-+-=|-- -++.||.+|.+=+++..++.    .|.....  ..++.|   +|-.|
T Consensus        76 DG~DYvPt~k~VLfGHHFasIAGAGPivGPvl-Aa~~GwlP~~LWIl~G~vf~GaVhD~~~L~~--S~R~~G---rSig~  149 (701)
T PRK15015         76 DGLDYVPTDKKVLFGHHFAAIAGAGPLVGPVL-AAQMGYLPGMIWLLAGVVLAGAVQDFMVLFV--STRRDG---RSLGE  149 (701)
T ss_pred             CCCCcCcCCccchhHHHHHHHhccCccHHHHH-HHHHcchHHHHHHHHcceeechhhhhhheee--eecCCC---ccHHH
Confidence            44444444556666788889999999999988 78999999998777655432    2222211  112223   58999


Q ss_pred             HHHHHcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026491           88 LAGHIYGRRAYALTWGLQYVNLFMINTGYIILAGQALK  125 (238)
Q Consensus        88 l~~~~~G~~~~~~v~~~~~i~~~g~~v~yli~~~~~l~  125 (238)
                      ++++-.||+++.+..+...+.++-...++-....+.+.
T Consensus       150 ia~~~iG~~~~~lfli~i~~iliiviAvfalvvv~al~  187 (701)
T PRK15015        150 LVKEEMGPTAGVIALVACFMIMVIILAVLAMIVVKALT  187 (701)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999888888777777777777777766663

>COG1966 CstA Carbon starvation protein, predicted membrane protein [Signal transduction mechanisms]

Probab=95.27  E-value=0.31  Score=45.83  Aligned_cols=107  Identities=14%  Similarity=0.156  Sum_probs=74.4

Q ss_pred             CccccccchhHHHHHHHHhhhhhhhhhhhhHHhhhhhhhHHHHHHHHHHHHHH----HHHHHHHHhccccCCcccCcHHH
Q 026491           12 FFHLEMLDSWFQVGFVLTTGINSAYVLGYPGTVMVPLGWIAGVVGLIIATIVS----LNANALIAKLHEFGGKRHIRYRD   87 (238)
Q Consensus        12 ~~~~~~~~s~~~a~~~l~~~~iG~GiLalP~a~~~~~G~~~G~i~l~~~~~~~----~yt~~lL~~~~~~~~~~~~sY~~   87 (238)
                      ||.|.-..+.+...-|=+.++-|+|-+-=|-- -+|.||.+|.+=+++.+++.    .|....+  ..++.|   +|-.|
T Consensus        45 DG~DYVPtnk~vlfGhHFaaIAGAGPivGPvl-AAq~G~Lp~~LWIl~G~VfaGaVhD~~~L~~--SvR~~G---~Si~~  118 (575)
T COG1966          45 DGVDYVPTNKWVLFGHHFASIAGAGPIVGPAL-AAQYGWLPAFLWILLGCVFAGAVHDYFSLML--SVRHGG---KSIGE  118 (575)
T ss_pred             CCcccccCCchhhhHHHHHHHhccCcchhHHH-HHHhcCcHHHHHHHHhhhhhhhhhhhhheee--eeccCC---ccHHH
Confidence            44445556788888888889999999999988 89999999988777665543    2222111  122223   58999


Q ss_pred             HHHHHcCccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026491           88 LAGHIYGRRAYALTWGLQYVNLFMINTGYIILAGQAL  124 (238)
Q Consensus        88 l~~~~~G~~~~~~v~~~~~i~~~g~~v~yli~~~~~l  124 (238)
                      ++++-.||..+.+..+...+-.+-+..++-....+.+
T Consensus       119 ia~~~lG~~a~~~~~~~~l~iliiv~Avfa~vv~~~l  155 (575)
T COG1966         119 IAGKYLGRTAKVFFLLLALILLILVGAVFAAVIAKLL  155 (575)
T ss_pred             HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999987776666655555555544444433

>TIGR00796 livcs branched-chain amino acid uptake carrier

Probab=95.26  E-value=0.82  Score=41.45  Aligned_cols=79  Identities=6%  Similarity=0.026  Sum_probs=59.3

Q ss_pred             CcHHHHHHHHcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhcCCChh
Q 026491           83 IRYRDLAGHIYGRRAYALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTMKLPYFIAIAGFVCALFAIGIPNLS  162 (238)
Q Consensus        83 ~sY~~l~~~~~G~~~~~~v~~~~~i~~~g~~v~yli~~~~~l~~~~~~~~~~~~~~~~~~~iii~~~~~~lpl~~l~~l~  162 (238)
                      .--.+++++.||+.|..++.+...+.|++++++.+...+|.++++++       ..+.+.|.++.++.. ..++ .-.++
T Consensus       255 ~~l~~~a~~~~G~~G~~ll~i~v~lACLtT~iGli~~~a~~f~~~~~-------k~~y~~~v~~~~l~s-~~ia-~~Gl~  325 (378)
T TIGR00796       255 QILSAYSQHLFGSLGSFLLGLIITLACLTTAVGLTTACSEYFHKLVP-------KLSYKTWVIVFTLFS-FIVA-NLGLT  325 (378)
T ss_pred             HHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-------CCCHHHHHHHHHHHH-HHHH-HhCHH
Confidence            35778999999999999999999999999999999999998877642       255677777766665 3332 23566


Q ss_pred             hHHHHHHH
Q 026491          163 ALGVWLGV  170 (238)
Q Consensus       163 ~l~~~S~~  170 (238)
                      ++--.+..
T Consensus       326 ~Ii~~~~P  333 (378)
T TIGR00796       326 QIISISIP  333 (378)
T ss_pred             HHHHHHHH
Confidence            65544443

transmembrane helical spanners.

>PRK09395 actP acetate permease; Provisional

Probab=94.99  E-value=3.4  Score=39.29  Aligned_cols=147  Identities=17%  Similarity=0.093  Sum_probs=89.0

Q ss_pred             cccchhHHHHHHHHhhhhhh-hhhhhhHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhccccCCcccCcHHHHHHHHcC
Q 026491           16 EMLDSWFQVGFVLTTGINSA-YVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKLHEFGGKRHIRYRDLAGHIYG   94 (238)
Q Consensus        16 ~~~~s~~~a~~~l~~~~iG~-GiLalP~a~~~~~G~~~G~i~l~~~~~~~~yt~~lL~~~~~~~~~~~~sY~~l~~~~~G   94 (238)
                      .|+-++|...+.+..+.+++ ..++.|-. .-+.||. +........+-......++.+-..+.+  ..|++|.-+.=||
T Consensus        68 gr~l~~~~~~~si~At~~Sa~tfiG~~g~-~y~~G~~-~~~~~~~~~~g~~~~~~~~~~~~r~~g--~~T~~d~l~~Ryg  143 (551)
T PRK09395         68 GGGITGFQNGLAIAGDYMSAASFLGISAL-VFTSGYD-GLIYSIGFLVGWPIILFLIAERLRNLG--KYTFADVASYRLK  143 (551)
T ss_pred             CCCCcHHHHHHHHHHHHHHHHHHHHhhHH-HHHhCHH-HHHHHHHHHHHHHHHHHHHHHHHhhCC--CccHHHHHHHHcC
Confidence            45667887888777777665 56788876 5566763 322222111111111223333222233  4689999888898


Q ss_pred             c-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhcCCChhhHHHHHHHHHH
Q 026491           95 R-RAYALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTMKLPYFIAIAGFVCALFAIGIPNLSALGVWLGVSTV  173 (238)
Q Consensus        95 ~-~~~~~v~~~~~i~~~g~~v~yli~~~~~l~~~~~~~~~~~~~~~~~~~iii~~~~~~lpl~~l~~l~~l~~~S~~~~~  173 (238)
                      + +.|.+..+...+..+......++-.|..++.++.        ++...-+++.++++ +.-...--++...|+..+=.+
T Consensus       144 s~~~r~l~av~~iv~~~~yl~~q~~g~g~il~~~~g--------i~~~~~ili~~~i~-~iYt~~GGm~av~~TD~iQ~i  214 (551)
T PRK09395        144 QGPIRTLSACGSLVVVALYLIAQMVGAGKLIQLLFG--------LNYHVAVVLVGVLM-MVYVLFGGMLATTWVQIIKAV  214 (551)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------CCHHHHHHHHHHHH-HHHHhhcchHHHHHHHHHHHH
Confidence            5 4688877777776667677777777777766532        33333344544544 566677888888888877654


Q ss_pred             HH
Q 026491          174 LS  175 (238)
Q Consensus       174 ~~  175 (238)
                      ..
T Consensus       215 im  216 (551)
T PRK09395        215 LL  216 (551)
T ss_pred             HH
Confidence            33

>PRK12488 acetate permease; Provisional

Probab=94.55  E-value=4.4  Score=38.53  Aligned_cols=148  Identities=16%  Similarity=0.102  Sum_probs=93.4

Q ss_pred             cccchhHHHHHHHHhhhhhhh-hhhhhHHhhhhhhhHHHHHHHHHHHHHHHH-HHHHHHhccccCCcccCcHHHHHHHHc
Q 026491           16 EMLDSWFQVGFVLTTGINSAY-VLGYPGTVMVPLGWIAGVVGLIIATIVSLN-ANALIAKLHEFGGKRHIRYRDLAGHIY   93 (238)
Q Consensus        16 ~~~~s~~~a~~~l~~~~iG~G-iLalP~a~~~~~G~~~G~i~l~~~~~~~~y-t~~lL~~~~~~~~~~~~sY~~l~~~~~   93 (238)
                      .|+-++|...+.+..+.+++. .++.|-. .-+.|+. +....+. ..+.+. ...++.+-..+.+  ..|.+|.-+.=|
T Consensus        66 GR~l~~~~~~~si~at~~Sa~sflG~~G~-~y~~G~~-~~~~~~g-~~~g~~~~~~~~a~~lr~~g--~~T~~d~l~~Rf  140 (549)
T PRK12488         66 GGGLTGMQNGLAIAGDMISAASFLGISAM-MFMNGYD-GLLYALG-VLAGWPIILFLIAERLRNLG--KYTFADVVSYRL  140 (549)
T ss_pred             CCCCcHHHHHHHHHHHHHHHHHHHHHHHH-HHHhChh-HHHHHHH-HHHHHHHHHHHHHHHHHHCC--CcchHHHHHHHc
Confidence            556688888888888877764 5888877 6667763 3322221 111211 1222333222233  368888887778


Q ss_pred             C-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhcCCChhhHHHHHHHHH
Q 026491           94 G-RRAYALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTMKLPYFIAIAGFVCALFAIGIPNLSALGVWLGVST  172 (238)
Q Consensus        94 G-~~~~~~v~~~~~i~~~g~~v~yli~~~~~l~~~~~~~~~~~~~~~~~~~iii~~~~~~lpl~~l~~l~~l~~~S~~~~  172 (238)
                      | |+.|.+..+...+..+......++-.|..++.++.        ++...=+++.++++ +.-...--++...|+..+=.
T Consensus       141 ~s~~~r~laai~~i~~~~~yl~~q~~g~g~il~~l~g--------i~~~~~iii~~~i~-~~Yt~~GGm~av~~td~iQ~  211 (549)
T PRK12488        141 AQGPVRLTAAFGTLTVVLMYLVAQMVGAGKLIELLFG--------ISYLYAVVIVGALM-VLYVTFGGMLATTWVQIIKA  211 (549)
T ss_pred             CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------CCHHHHHHHHHHHH-HHHHhccchhHHHHHHHHHH
Confidence            7 56788888888888888888888888888777642        22222244444444 56667788999999888875


Q ss_pred             HHHHH
Q 026491          173 VLSTI  177 (238)
Q Consensus       173 ~~~~~  177 (238)
                      +..+.
T Consensus       212 ~im~~  216 (549)
T PRK12488        212 VLLLS  216 (549)
T ss_pred             HHHHH
Confidence            44433

>PRK09442 panF sodium/panthothenate symporter; Provisional

Probab=94.17  E-value=4.9  Score=37.47  Aligned_cols=151  Identities=17%  Similarity=0.088  Sum_probs=88.9

Q ss_pred             cccchhHHHHHHHHhhhhhh-hhhhhhHHhhhhhhhHHHHHHH--HHHHHHHH-HHHHHHHhccccCCcccCcHHHHHHH
Q 026491           16 EMLDSWFQVGFVLTTGINSA-YVLGYPGTVMVPLGWIAGVVGL--IIATIVSL-NANALIAKLHEFGGKRHIRYRDLAGH   91 (238)
Q Consensus        16 ~~~~s~~~a~~~l~~~~iG~-GiLalP~a~~~~~G~~~G~i~l--~~~~~~~~-yt~~lL~~~~~~~~~~~~sY~~l~~~   91 (238)
                      .|+-+++...+.+..+.+++ ..++.|-. .-+-|+.+-....  .....+.. +-+..+.+..++.  +..|.+|.-+.
T Consensus        40 gr~~~~~~~~~s~~at~~s~~t~ig~~g~-~y~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~--~~~T~~e~l~~  116 (483)
T PRK09442         40 NRSMGGFVLAMTLIATYISASSFIGGPGA-AYKYGLGWVLLAMIQVPTVWLSLGILGKKFAILARKY--NAVTLNDMLRA  116 (483)
T ss_pred             CCCccHHHHHHHHHHHHhhHhHHhCChhH-HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--CCccHHHHHHH
Confidence            55667787788777766655 67777866 4555653211111  11111111 1111222222222  35689999999


Q ss_pred             HcCccc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhcCCChhhHHHHHHH
Q 026491           92 IYGRRA-YALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTMKLPYFIAIAGFVCALFAIGIPNLSALGVWLGV  170 (238)
Q Consensus        92 ~~G~~~-~~~v~~~~~i~~~g~~v~yli~~~~~l~~~~~~~~~~~~~~~~~~~iii~~~~~~lpl~~l~~l~~l~~~S~~  170 (238)
                      -||++. +.+..+...+..++...+.+...|..++.+++        ++...-+++.++++ +.-..+.-++...++..+
T Consensus       117 Ryg~~~~~~~~~i~~~~~~~~~~~~ql~~~g~~l~~~~g--------i~~~~~iii~~~iv-~iYt~~GGl~av~~TD~i  187 (483)
T PRK09442        117 RYQSRLLVWLASLSLLVFFFAAMTAQFIGGARLLETATG--------ISYETGLLIFGITV-ALYTAFGGFRAVVLTDAL  187 (483)
T ss_pred             HhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------CCHHHHHHHHHHHH-HHHHHhccHHHHHHHHHH
Confidence            999764 66666666666677777777788888877642        33333344545544 567778899999988888


Q ss_pred             HHHHHHHH
Q 026491          171 STVLSTIY  178 (238)
Q Consensus       171 ~~~~~~~~  178 (238)
                      =.+..+..
T Consensus       188 Q~~i~~~~  195 (483)
T PRK09442        188 QGIVMLVG  195 (483)
T ss_pred             HHHHHHHH
Confidence            75543333

>COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only]

Probab=92.08  E-value=11  Score=35.49  Aligned_cols=148  Identities=14%  Similarity=0.040  Sum_probs=94.1

Q ss_pred             ccchhHHHHHHHHhhhhh-hhhhhhhHHhhhhhhhHHHHHHHH---HHHHHHHHHHHHHHhccccCCcccCcHHHHHHHH
Q 026491           17 MLDSWFQVGFVLTTGINS-AYVLGYPGTVMVPLGWIAGVVGLI---IATIVSLNANALIAKLHEFGGKRHIRYRDLAGHI   92 (238)
Q Consensus        17 ~~~s~~~a~~~l~~~~iG-~GiLalP~a~~~~~G~~~G~i~l~---~~~~~~~yt~~lL~~~~~~~~~~~~sY~~l~~~~   92 (238)
                      |+-+.+-.......+..+ --.+++|-. .-+.|+..--..+-   +......+-...+.+..+  .++..|.+|.-++=
T Consensus        38 R~lg~~v~~ls~~as~~s~~t~lG~~g~-ay~~G~~~~~~~~~~~~~~~~~~~~~~~rl~~~~~--~~~~~T~~d~l~~R  114 (493)
T COG0591          38 RSLGPFVYALSAAASDTSGWTFLGLPGL-AYASGLSGLWIAIGLLIGAFLLWLLFAPRLRRLAK--ARGATTIPDFLEAR  114 (493)
T ss_pred             CcCChHHHHHHHHHHHHHHHHHhcchHH-HHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--ccCCccHHHHHHHH
Confidence            343444555555555555 678888988 66777643222222   222222333333333332  22357999999999


Q ss_pred             cC-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhcCCChhhHHHHHHHH
Q 026491           93 YG-RRAYALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTMKLPYFIAIAGFVCALFAIGIPNLSALGVWLGVS  171 (238)
Q Consensus        93 ~G-~~~~~~v~~~~~i~~~g~~v~yli~~~~~l~~~~~~~~~~~~~~~~~~~iii~~~~~~lpl~~l~~l~~l~~~S~~~  171 (238)
                      || |+.|.+..+...+..++.+...++-.|+.++..+.        .+...=+++.+..+ ..-..+--+++..|+..+=
T Consensus       115 f~s~~lr~l~ali~iv~~i~yia~ql~~~~~~~~~~~g--------i~~~~~~~~~~~~v-~~Yt~~gG~~av~~Td~iq  185 (493)
T COG0591         115 FGSKILRILSALIIIVFFIPYIALQLVAGGLLLSLLFG--------ISYVTGILIGALIV-ALYTFLGGLRAVVWTDFIQ  185 (493)
T ss_pred             cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC--------CCHHHHHHHHHHHH-HHHHHHcChhHHHHHHHHH
Confidence            99 88899999999999999999999999998866542        22222233333333 4666778889999888877


Q ss_pred             HHHHH
Q 026491          172 TVLST  176 (238)
Q Consensus       172 ~~~~~  176 (238)
                      .+...
T Consensus       186 g~im~  190 (493)
T COG0591         186 GLIML  190 (493)
T ss_pred             HHHHH
Confidence            54333

>TIGR02711 symport_actP cation/acetate symporter ActP

Probab=91.16  E-value=14  Score=35.13  Aligned_cols=146  Identities=18%  Similarity=0.133  Sum_probs=87.6

Q ss_pred             cccchhHHHHHHHHhhhhhh-hhhhhhHHhhhhhhhHHHHHHHHHHHHHHH-HHHHHHHhccccCCcccCcHHHHHHHHc
Q 026491           16 EMLDSWFQVGFVLTTGINSA-YVLGYPGTVMVPLGWIAGVVGLIIATIVSL-NANALIAKLHEFGGKRHIRYRDLAGHIY   93 (238)
Q Consensus        16 ~~~~s~~~a~~~l~~~~iG~-GiLalP~a~~~~~G~~~G~i~l~~~~~~~~-yt~~lL~~~~~~~~~~~~sY~~l~~~~~   93 (238)
                      .|+-++|...+.+..+.+++ ..++.|-. ..+.|+- +....+. ..+.+ ....++.+-..+.+  ..|.+|.-+.=|
T Consensus        66 Gr~~~~~~~g~si~at~~SaasflG~~G~-~y~~G~~-~~~~~~g-~~~~~~i~~~~~a~~lrr~g--~~T~~d~l~~Rf  140 (549)
T TIGR02711        66 GGNITGFQNGLAIAGDYMSAASFLGISAL-VYTSGYD-GLIYSLG-FLVGWPIILFLIAERLRNLG--RYTFADVASYRL  140 (549)
T ss_pred             CCCccHHHHHHHHHHHHHHHHHHHHHHHH-HHHhChH-HHHHHHH-HHHHHHHHHHHHHHHHHHcC--CccHHHHHHHHc
Confidence            45667787777777776654 77888876 6666763 3332221 11221 12233333222333  368999888878


Q ss_pred             Ccc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhcCCChhhHHHHHHHHH
Q 026491           94 GRR-AYALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTMKLPYFIAIAGFVCALFAIGIPNLSALGVWLGVST  172 (238)
Q Consensus        94 G~~-~~~~v~~~~~i~~~g~~v~yli~~~~~l~~~~~~~~~~~~~~~~~~~iii~~~~~~lpl~~l~~l~~l~~~S~~~~  172 (238)
                      |.+ .|.+..+...+..+...+..++-.|..++.++.        ++...=+++.++++ +.-...--++...|+-.+=.
T Consensus       141 ~s~~~r~l~ai~~i~~~~~yl~~ql~g~g~il~~~~g--------i~~~~~iii~~~i~-~~Yt~~GGm~av~~td~iQ~  211 (549)
T TIGR02711       141 KQRPIRILSACGSLVVVALYLIAQMVGAGKLIELLFG--------LNYHVAVVLVGILM-VMYVLFGGMLATTWVQIIKA  211 (549)
T ss_pred             CCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------CCHHHHHHHHHHHH-HHHHHhhhhHHHHHHHHHHH
Confidence            754 577777777776677777777778877776642        22222244444444 45666778888888887765


Q ss_pred             HHH
Q 026491          173 VLS  175 (238)
Q Consensus       173 ~~~  175 (238)
                      +..
T Consensus       212 ~im  214 (549)
T TIGR02711       212 VLL  214 (549)
T ss_pred             HHH
Confidence            443

Members of this family belong to the Sodium:solute symporter family. Both members of this family and other close homologs tend to be encoded next to a member of Pfam family pfam04341, a set of uncharacterized membrane proteins. The characterized member from E. coli is encoded near and cotranscribed with the acetyl coenzyme A synthetase (acs) gene. Proximity to an acs gene was used as one criterion for determining the trusted cutoff for this model. Closely related proteins may differ in function and are excluded by the high cutoffs of this model; members of the family of phenylacetic acid transporter PhaJ can score as high as 1011 bits.

>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter

Probab=90.87  E-value=13  Score=34.33  Aligned_cols=81  Identities=17%  Similarity=0.155  Sum_probs=40.1

Q ss_pred             chhHHHHHHHHhhhhhhhhhhhhHHhhhhhhhHHHHHHHHHHHHHHHH----HHHHHHhccccCCcccCcHHHHHHHHcC
Q 026491           19 DSWFQVGFVLTTGINSAYVLGYPGTVMVPLGWIAGVVGLIIATIVSLN----ANALIAKLHEFGGKRHIRYRDLAGHIYG   94 (238)
Q Consensus        19 ~s~~~a~~~l~~~~iG~GiLalP~a~~~~~G~~~G~i~l~~~~~~~~y----t~~lL~~~~~~~~~~~~sY~~l~~~~~G   94 (238)
                      -+++.-......++.  ++-.+|.  .++.|. ..++..++.+++...    +.--|....++.|    ..-+-+++++|
T Consensus         3 ~~~~~l~~~~~~~v~--~~~~~~~--~a~~G~-~~~~~~~i~~~~~~ip~al~~aEL~~~~P~~G----G~y~~~~~a~G   73 (474)
T TIGR03813         3 LTVVTLAIMNITAVV--SLRGLPA--EAEYGL-SAAFYYLFAAIFFLVPVSLVAAELATAWPEKG----GVFRWVGEAFG   73 (474)
T ss_pred             ccHHHHHHHHHHHHH--HhhcchH--HHHhhH-HHHHHHHHHHHHHHHHHHHHHHHHHccCCCCC----CceeeHhhhcC
Confidence            344444444444444  4455574  467886 343344444433322    2223333343333    34455678899


Q ss_pred             ccchhHHHHHHHHH
Q 026491           95 RRAYALTWGLQYVN  108 (238)
Q Consensus        95 ~~~~~~v~~~~~i~  108 (238)
                      |+..........+.
T Consensus        74 ~~~gf~~gw~~w~~   87 (474)
T TIGR03813        74 ARWGFLAIFMLWAQ   87 (474)
T ss_pred             hhHHHHHHHHHHHH
Confidence            98876665544443

Members of this protein family are putative putative glutamate/gamma-aminobutyrate antiporters. Each member of the seed alignment is found adjacent to a glutamate decarboxylase, which converts glutamate (Glu) to gamma-aminobutyrate (GABA). However, the majority belong to genome contexts with a glutaminase (converts Gln to Glu) as well as the decarboxylase that converts Glu to GABA. The specificity of the transporter remains uncertain.

>TIGR02121 Na_Pro_sym sodium/proline symporter

Probab=90.45  E-value=15  Score=34.27  Aligned_cols=150  Identities=13%  Similarity=0.072  Sum_probs=83.9

Q ss_pred             cccchhHHHHHHHHhhhhhh-hhhhhhHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhccccC---CcccCcHHHHHHH
Q 026491           16 EMLDSWFQVGFVLTTGINSA-YVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKLHEFG---GKRHIRYRDLAGH   91 (238)
Q Consensus        16 ~~~~s~~~a~~~l~~~~iG~-GiLalP~a~~~~~G~~~G~i~l~~~~~~~~yt~~lL~~~~~~~---~~~~~sY~~l~~~   91 (238)
                      .|+-+++...+.+..+.+++ -.++.|-. .-+-|+. +.................+.+-..+.   +.+..|-+|.-+.
T Consensus        35 gr~~~~~~~~~s~~At~~s~~~~~G~~g~-~y~~G~~-~~~~~~g~~~~~~~~~~~~~~~~r~~~~~~~~~~T~~e~l~~  112 (487)
T TIGR02121        35 GRSLGPFVTALSAGASDMSGWLLMGLPGA-LYVTGLS-ELWIAIGLTIGAYINWKFVAPRLRVYTEAAHNSITLPDFFEN  112 (487)
T ss_pred             CCcccHHHHHHHHHHHHHhHHHHHhhHHH-HHHhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCccHHHHHHH
Confidence            55667888888887777665 46778876 5566874 32222222222222233333321211   1224678888888


Q ss_pred             HcCccch---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhcCCChhhHHHHH
Q 026491           92 IYGRRAY---ALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTMKLPYFIAIAGFVCALFAIGIPNLSALGVWL  168 (238)
Q Consensus        92 ~~G~~~~---~~v~~~~~i~~~g~~v~yli~~~~~l~~~~~~~~~~~~~~~~~~~iii~~~~~~lpl~~l~~l~~l~~~S  168 (238)
                      =||++.|   .+..+...+.........+...|..++.+++        .+...-+++.++++ +.-...--++...++.
T Consensus       113 Ryg~~~~~~~~~~ai~~~~~~~~~~~~~l~~~~~~l~~~~g--------i~~~~~iii~~~i~-~~Yt~~GGl~av~~TD  183 (487)
T TIGR02121       113 RFNDKSRLLRIISALIILVFFTIYTSSGLVAGGKLFESTFG--------LDYKTGLLIGALII-VIYTFFGGFLAVSWTD  183 (487)
T ss_pred             HhCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------ccHHHHHHHHHHHH-HHHHHhhhHHHHHHHH
Confidence            8996543   3344444444445555566667777666542        22233344444444 4666778889988888


Q ss_pred             HHHHHHHH
Q 026491          169 GVSTVLST  176 (238)
Q Consensus       169 ~~~~~~~~  176 (238)
                      .+=.+..+
T Consensus       184 ~iQ~~i~~  191 (487)
T TIGR02121       184 FVQGLLMF  191 (487)
T ss_pred             HHHHHHHH
Confidence            77754433

This family consists of the sodium/proline symporter (proline permease) from a number of Gram-negative and Gram-positive bacteria and from the archaeal genus Methanosarcina. Using the related pantothenate permease as an outgroup, candidate sequences from Bifidobacterium longum and several from archaea are found to be outside the clade defined by known proline permeases. These sequences, scoring between 570 and -40, define the range between trusted and noise cutoff scores.

>TIGR03648 Na_symport_lg probable sodium:solute symporter, VC_2705 subfamily

Probab=89.44  E-value=20  Score=34.11  Aligned_cols=146  Identities=14%  Similarity=0.035  Sum_probs=86.9

Q ss_pred             cccchhHHHHHHHHhhhhhh-hhhhhhHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhccccCCcccCcHHHHHHHHcC
Q 026491           16 EMLDSWFQVGFVLTTGINSA-YVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKLHEFGGKRHIRYRDLAGHIYG   94 (238)
Q Consensus        16 ~~~~s~~~a~~~l~~~~iG~-GiLalP~a~~~~~G~~~G~i~l~~~~~~~~yt~~lL~~~~~~~~~~~~sY~~l~~~~~G   94 (238)
                      .|+-+||...+.+..+.+++ -.++.|-. ..+.|+. +................++.+...+.+  ..|-.|.-+.=||
T Consensus        31 Gr~l~~~~~~~s~~At~~Sa~tflG~~g~-~y~~G~~-~~~~~~g~~~~~~~~~~~~~p~~rr~~--~~T~~e~l~~Rf~  106 (552)
T TIGR03648        31 GRGVPPVANGMATAADWMSAASFISMAGL-IAFLGYD-GLAYLMGWTGGYVLLALLLAPYLRKFG--KYTVPDFIGDRYY  106 (552)
T ss_pred             CCCCchHHHHHHHHHHHHhHHHHHHHHHH-HHHhChH-HHHHHHHHHHHHHHHHHHHHHHHHHCC--CccHHHHHHHHhC
Confidence            55668898888888887755 57778866 5556652 222211111111122334444333333  3566776666688


Q ss_pred             cc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhcCCChhhHHHHHHHHHH
Q 026491           95 RR-AYALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTMKLPYFIAIAGFVCALFAIGIPNLSALGVWLGVSTV  173 (238)
Q Consensus        95 ~~-~~~~v~~~~~i~~~g~~v~yli~~~~~l~~~~~~~~~~~~~~~~~~~iii~~~~~~lpl~~l~~l~~l~~~S~~~~~  173 (238)
                      ++ .|.+..+...+..+......+...+..++.+..        .+...-+++.++++ +.-...--+|...|+-.+=.+
T Consensus       107 s~~~~~~~~i~~~~~~~~~l~~ql~~~~~~l~~~~g--------i~~~~~iii~~~i~-~iYt~~GG~~aV~~TD~iQ~i  177 (552)
T TIGR03648       107 SNTARLVAVICAIFISFTYVAGQMRGVGVVFSRFLE--------VDFETGVFIGMAIV-FFYAVLGGMKGVTWTQVAQYI  177 (552)
T ss_pred             CCceehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------CCHHHHHHHHHHHH-HHHHHhhhHHHHHHHHHHHHH
Confidence            55 577777777777777777777777777776642        22223244444444 456667888998888877754


Q ss_pred             H
Q 026491          174 L  174 (238)
Q Consensus       174 ~  174 (238)
                      .
T Consensus       178 i  178 (552)
T TIGR03648       178 V  178 (552)
T ss_pred             H
Confidence            3

This family belongs to a larger family of transporters of the sodium:solute symporter superfamily, TC 2.A.21. Members of this strictly bacterial protein subfamily are found almost invariably immediately downstream from a member of family TIGR03647. Occasionally, the two genes are fused.

>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V))

Probab=88.92  E-value=3.6  Score=37.91  Aligned_cols=64  Identities=13%  Similarity=0.248  Sum_probs=53.1

Q ss_pred             cHHHHHHHHcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHH
Q 026491           84 RYRDLAGHIYGRRAYALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTMKLPYFIAIAGFVCALFA  155 (238)
Q Consensus        84 sY~~l~~~~~G~~~~~~v~~~~~i~~~g~~v~yli~~~~~l~~~~~~~~~~~~~~~~~~~iii~~~~~~lpl  155 (238)
                      --.+++++.+|+.|..+..+...+.|+=++++.+...+|..++.++       ..+.+.|.++++++- ..+
T Consensus       262 lL~~i~~~~~G~~G~~ll~iiv~lACLTTaIGL~~a~a~yf~~~~~-------kisY~~~v~i~~i~S-~~i  325 (427)
T PF05525_consen  262 LLSQIANHLFGSAGQILLGIIVFLACLTTAIGLISACAEYFSELFP-------KISYKVWVIIFTIFS-FII  325 (427)
T ss_pred             HHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------ccChHHHHHHHHHHH-HHH
Confidence            4677899999999999999999999999999999999999998864       245577887776554 344

They function by a Na+ or H+ symport mechanism and display 12 putative transmembrane helical spanners.; GO: 0015658 branched-chain aliphatic amino acid transmembrane transporter activity, 0015803 branched-chain aliphatic amino acid transport, 0016021 integral to membrane

>PRK15419 proline:sodium symporter PutP; Provisional

Probab=83.88  E-value=38  Score=31.75  Aligned_cols=150  Identities=12%  Similarity=0.035  Sum_probs=84.9

Q ss_pred             cccchhHHHHHHHHhhhhhh-hhhhhhHHhhhhhhhHHHHHHHHHHHHHH-HHHHHHHHh-ccc--cCCcccCcHHHHHH
Q 026491           16 EMLDSWFQVGFVLTTGINSA-YVLGYPGTVMVPLGWIAGVVGLIIATIVS-LNANALIAK-LHE--FGGKRHIRYRDLAG   90 (238)
Q Consensus        16 ~~~~s~~~a~~~l~~~~iG~-GiLalP~a~~~~~G~~~G~i~l~~~~~~~-~yt~~lL~~-~~~--~~~~~~~sY~~l~~   90 (238)
                      .|+-++|...+.+..+.+++ -.++.|-. .-+.|+.. .... +...+. .....++.+ ...  +...+..|-+|.-+
T Consensus        39 gr~l~~~~~~~s~~At~~Sa~t~iG~~g~-~y~~G~~~-~~~~-~~~~~~~~l~~~~~~~~l~~~~~~~~~~~T~~e~l~  115 (502)
T PRK15419         39 GRSLGPFVTALSAGASDMSGWLLMGLPGA-VFLSGISE-SWIA-IGLTLGAWINWKLVAGRLRVHTEYNNNALTLPDYFT  115 (502)
T ss_pred             CCCccHHHHHHHHHHHHHHHHHHHHhhHH-HHHcCHHH-HHHH-HHHHHHHHHHHHHHHHHHHHHHHHhcCceeHHHHHH
Confidence            55668888888877777766 55778877 55777642 2111 111122 111222221 111  11122457778888


Q ss_pred             HHcCccchh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhcCCChhhHHHH
Q 026491           91 HIYGRRAYA---LTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTMKLPYFIAIAGFVCALFAIGIPNLSALGVW  167 (238)
Q Consensus        91 ~~~G~~~~~---~v~~~~~i~~~g~~v~yli~~~~~l~~~~~~~~~~~~~~~~~~~iii~~~~~~lpl~~l~~l~~l~~~  167 (238)
                      +=||++.|.   +..+...+..+......+...|..++.++.        ++...-+++.++++ +.-..+--++...++
T Consensus       116 ~Ry~~~~~~~~~~~~i~~~~~~~~~~~~ql~~~~~~l~~~~g--------i~~~~~iii~~~iv-~iYt~~GGl~aV~~T  186 (502)
T PRK15419        116 GRFEDKSRILRIISALVILLFFTIYCASGIVAGARLFESTFG--------MSYETALWAGAAAT-ILYTFIGGFLAVSWT  186 (502)
T ss_pred             HHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------CCHHHHHHHHHHHH-HHHHHhhhHHHHHHH
Confidence            889875443   444444555555555666666777766542        33333344544554 567778899999998


Q ss_pred             HHHHHHHHHH
Q 026491          168 LGVSTVLSTI  177 (238)
Q Consensus       168 S~~~~~~~~~  177 (238)
                      ..+=.+..+.
T Consensus       187 D~iQ~~imi~  196 (502)
T PRK15419        187 DTVQASLMIF  196 (502)
T ss_pred             HHHHHHHHHH
Confidence            8887654433

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	238
3l1l_A	445	Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC	99.08
3gia_A	444	Uncharacterized protein MJ0609; membrane protein,	98.68
2jln_A	501	MHP1; hydantoin, transporter, membrane protein, nu	98.17
4djk_A	511	Probable glutamate/gamma-aminobutyrate antiporter;	98.11
3dh4_A	530	Sodium/glucose cotransporter; membrane protein, sy	93.99
2xq2_A	593	Sodium/glucose cotransporter; transport protein, i	92.41

>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A

Probab=99.08  E-value=3.9e-09  Score=94.83  Aligned_cols=215  Identities=13%  Similarity=0.012  Sum_probs=126.5

Q ss_pred             cccccchhHHHHHHHHhhhhhhhhhhhhHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhccccCCcccCcHHHHHHHHc
Q 026491           14 HLEMLDSWFQVGFVLTTGINSAYVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKLHEFGGKRHIRYRDLAGHIY   93 (238)
Q Consensus        14 ~~~~~~s~~~a~~~l~~~~iG~GiLalP~a~~~~~G~~~G~i~l~~~~~~~~yt~~lL~~~~~~~~~~~~sY~~l~~~~~   93 (238)
                      +++||-++++...-.+.+++|+|++.+|.. .++.|. .+++..++.+++.........+...+..+ .-.+.+..++.+
T Consensus         5 ~~~r~l~~~~~~~l~ig~~iG~Gif~~~~~-~~~~G~-~~~~~~li~~~~~~~~a~~~~el~~~~p~-~Gg~y~~~~~~~   81 (445)
T 3l1l_A            5 ADAHKVGLIPVTLMVSGAIMGSGVFLLPAN-LASTGG-IAIYGWLVTIIGALGLSMVYAKMSFLDPS-PGGSYAYARRCF   81 (445)
T ss_dssp             --CCCBCHHHHHHHHHHHHCSSHHHHHHHH-HHHHCT-HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-TTTHHHHHHHHS
T ss_pred             CCCCcccHHHHHHHHHHhHHhhhHHhhHHH-HHHhhh-HHHHHHHHHHHHHHHHHHHHHHHHccCCC-CCCchhhHHhHc
Confidence            456788999999999999999999999998 888886 47777788888887777776665322111 225667778999


Q ss_pred             CccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhcCCChhhHHHHHHHHHH
Q 026491           94 GRRAYALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTMKLPYFIAIAGFVCALFAIGIPNLSALGVWLGVSTV  173 (238)
Q Consensus        94 G~~~~~~v~~~~~i~~~g~~v~yli~~~~~l~~~~~~~~~~~~~~~~~~~iii~~~~~~lpl~~l~~l~~l~~~S~~~~~  173 (238)
                      ||+...+......+.......++....++.++..++...   ..  ...+.+...+..++-..-.+..|..+.++.+...
T Consensus        82 G~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~--~~~~~~~~~~~~~~~~in~~g~~~~~~~~~~~~~  156 (445)
T 3l1l_A           82 GPFLGYQTNVLYWLACWIGNIAMVVIGVGYLSYFFPILK---DP--WVLTITCVVVLWIFVLLNIVGPKMITRVQAVATV  156 (445)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCGGGG---SH--HHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred             CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcccc---cc--HHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHH
Confidence            999988888888777766666777777776654433211   01  1122222111111122233556666666555443


Q ss_pred             HHHHHHHHHHHHHhhcCCCCCCCcCCCCCCcchhhhhhHhHHHHHHHHh-ccCchhhhhhcccCC
Q 026491          174 LSTIYIVIAIWLSVRDGLKNPARDYSIPGTTATKIFESIGACANLVFAF-NTGMLPEIQVREEFR  237 (238)
Q Consensus       174 ~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~a~gi~~Faf-g~~v~p~I~~~M~~~  237 (238)
                      ..+...++.+...+....+ +.......+.......+++.++....|+| |......+.+|+|||
T Consensus       157 ~~i~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~~~e~k~p  220 (445)
T 3l1l_A          157 LALIPIVGIAVFGWFWFRG-ETYMAAWNVSGLGTFGAIQSTLNVTLWSFIGVESASVAAGVVKNP  220 (445)
T ss_dssp             HHHHHHHHHHHTTSTTCCC-CCCCCC-----------HHHHHHHHHHTTTTTTHHHHGGGGBSSH
T ss_pred             HHHHHHHHHHHHHHHHhCh-hhcccccCccCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCc
Confidence            3332222222222222111 00000111111112446778899999999 588888999999987

>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C

Probab=98.68  E-value=2e-06  Score=77.02  Aligned_cols=210  Identities=12%  Similarity=-0.010  Sum_probs=120.6

Q ss_pred             ccccchhHHHHHHHHhhhhhhhhhhhhHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhccccCCcccCcHHHHHHHHcC
Q 026491           15 LEMLDSWFQVGFVLTTGINSAYVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKLHEFGGKRHIRYRDLAGHIYG   94 (238)
Q Consensus        15 ~~~~~s~~~a~~~l~~~~iG~GiLalP~a~~~~~G~~~G~i~l~~~~~~~~yt~~lL~~~~~~~~~~~~sY~~l~~~~~G   94 (238)
                      ++|+-++++...-.+..++|+|++..|..+.++.|. ...+..++.+++...+...+.+......+ .-..-+..++.+|
T Consensus         4 ~~r~l~~~~~~~l~~g~~iG~gi~~~~~~~~~~~G~-~~~~~~li~~~~~~~~~~~~~el~~~~P~-~Gg~y~~~~~~~G   81 (444)
T 3gia_A            4 KNKKLSLWEAVSMAVGVMIGASIFSIFGVGAKIAGR-NLPETFILSGIYALLVAYSYTKLGAKIVS-NAGPIAFIHKAIG   81 (444)
T ss_dssp             CCCCBCHHHHHHHHHHHHHHHHTTTSHHHHHHHHGG-GHHHHHHHHHHHHHHHHHHHHHHHTTCCC-TTTHHHHHHHHHC
T ss_pred             cCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHHHHHHhhCCC-CCcHHHhHHHHhC
Confidence            567789999999999999999999988653667776 67777778888877777777766332111 1245677888899


Q ss_pred             ccc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHH--HHHHhcCCChhhHHHHHHHH
Q 026491           95 RRA-YALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTMKLPYFIAIAGFVC--ALFAIGIPNLSALGVWLGVS  171 (238)
Q Consensus        95 ~~~-~~~v~~~~~i~~~g~~v~yli~~~~~l~~~~~~~~~~~~~~~~~~~iii~~~~~--~lpl~~l~~l~~l~~~S~~~  171 (238)
                      |+. .-.+.....+........+....++.+...++     .  .....+..+.+..+  ++-..-.+..|..+.++.+.
T Consensus        82 ~~~~~g~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~--~~~~~~~~~~~~~~~~~~~~in~~g~~~~~~~~~~~  154 (444)
T 3gia_A           82 DNIITGALSILLWMSYVISIALFAKGFAGYFLPLIN-----A--PINTFNIAITEIGIVAFFTALNFFGSKAVGRAEFFI  154 (444)
T ss_dssp             SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-----C--CCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----C--CCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence            962 11223444444445556666667776665432     1  11122211111111  11222334566666666555


Q ss_pred             HHHHHHHHHHHHHHHhhcCCCCCCCcCCCCCCcchhhhhhHhHHHHHHHHh-ccCchhhhhhcccCC
Q 026491          172 TVLSTIYIVIAIWLSVRDGLKNPARDYSIPGTTATKIFESIGACANLVFAF-NTGMLPEIQVREEFR  237 (238)
Q Consensus       172 ~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~a~gi~~Faf-g~~v~p~I~~~M~~~  237 (238)
                      ....+...++.++..+....  ++ +.. +......+.+++.++....|+| |........+|+|||
T Consensus       155 ~~~~i~~~~~~ii~~~~~~~--~~-~~~-~~~~~~g~~~~~~~~~~~~~a~~G~e~~~~~~~e~k~P  217 (444)
T 3gia_A          155 VLVKLLILGLFIFAGLITIH--PS-YVI-PDLAPSAVSGMIFASAIFFLSYMGFGVITNASEHIENP  217 (444)
T ss_dssp             HHHHHHHHHHHHHHHHHHCC--GG-GTS-CCCSHHHHHHHHHHHHHGGGGGTHHHHHHTTGGGBSSH
T ss_pred             HHHHHHHHHHHHHHHHHHcC--hh-hcC-CCCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHccCc
Confidence            43333322222222333221  11 111 1112223446777888888999 488888888889887

>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A

Probab=98.17  E-value=0.00019  Score=65.80  Aligned_cols=152  Identities=13%  Similarity=0.044  Sum_probs=97.2

Q ss_pred             ccccchhHHHHHHHHhhhhhhhhhhhhHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhccccCCcccCcHHHHHHHHcC
Q 026491           15 LEMLDSWFQVGFVLTTGINSAYVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKLHEFGGKRHIRYRDLAGHIYG   94 (238)
Q Consensus        15 ~~~~~s~~~a~~~l~~~~iG~GiLalP~a~~~~~G~~~G~i~l~~~~~~~~yt~~lL~~~~~~~~~~~~sY~~l~~~~~G   94 (238)
                      ++|+.++++-...-+...+..+...+........++...++.+++..++...-+.++.+.-.+.|   .+|.++.|..||
T Consensus        23 ~~R~~~~~~~~~~W~g~~~~i~~~~~Ga~~~~GLs~~~a~lai~lG~li~~~~~~l~~~~G~~~G---l~~~v~~R~~FG   99 (501)
T 2jln_A           23 AERSVGPFSLAAIWFAMAIQVAIFIAAGQMTSSFQVWQVIVAIAAGCTIAVILLFFTQSAAIRWG---INFTVAARMPFG   99 (501)
T ss_dssp             GGCCBCHHHHHHHHHHHHCSTHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHHHHHTHHHHHHC---CCHHHHTTTTSC
T ss_pred             hhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHhHHHhhcC---CChhhhhHhhcc
Confidence            35556655544444444444444444332122344455666666665555544555544433443   469999999999


Q ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhcCCChhhHHHHHHHHHHH
Q 026491           95 RRAYALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTMKLPYFIAIAGFVCALFAIGIPNLSALGVWLGVSTVL  174 (238)
Q Consensus        95 ~~~~~~v~~~~~i~~~g~~v~yli~~~~~l~~~~~~~~~~~~~~~~~~~iii~~~~~~lpl~~l~~l~~l~~~S~~~~~~  174 (238)
                      +++..+..+...+.++|....-....|+.+..+++...+   ......+++++.++. ++.. ...++.++.+..++...
T Consensus       100 ~~Gs~i~~ll~~i~~igw~~v~~~~gg~al~~~~~~~~g---~~~~~v~~~i~~~l~-~~~~-~~G~~~i~~~~~~~~p~  174 (501)
T 2jln_A          100 IRGSLIPITLKALLSLFWFGFQTWLGALALDEITRLLTG---FTNLPLWIVIFGAIQ-VVTT-FYGITFIRWMNVFASPV  174 (501)
T ss_dssp             TTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHH-HHHH-TTHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---cchHHHHHHHHHHHH-HHHH-HhCHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999988765431   111234566666655 5665 55678888888777543

>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A

Probab=98.11  E-value=0.0001  Score=67.08  Aligned_cols=215  Identities=11%  Similarity=-0.005  Sum_probs=102.4

Q ss_pred             CCCccccccchhHHHHHHHHhhhhhhhhhhhhHHhhhhhhhHHHHHHHHHHHHH----HHHHHHHHHh--ccccCCcccC
Q 026491           10 SYFFHLEMLDSWFQVGFVLTTGINSAYVLGYPGTVMVPLGWIAGVVGLIIATIV----SLNANALIAK--LHEFGGKRHI   83 (238)
Q Consensus        10 ~~~~~~~~~~s~~~a~~~l~~~~iG~GiLalP~a~~~~~G~~~G~i~l~~~~~~----~~yt~~lL~~--~~~~~~~~~~   83 (238)
                      +++.+.+||-++++...-.+..++|  +.++|.  .+..|.. .++..++.+.+    ..++..-+..  ..+ .|    
T Consensus         4 ~~~~~~~r~l~~~~~~~l~~~~~ig--~~~~~~--~~~~G~~-~~~~~~i~~~~~~l~~al~~ael~s~~~~P-~G----   73 (511)
T 4djk_A            4 SVQTGKAKQLTLLGFFAITASMVMA--VYEYPT--FATSGFS-LVFFLLLGGILWFIPVGLCAAEMATVDGWE-EG----   73 (511)
T ss_dssp             --------CCCHHHHHHHTGGGGCC--GGGHHH--HHTTTTH-HHHHHHHHHHHTHHHHHHHHHHHHTTSCC--------
T ss_pred             cccCccCccccHHHHHHHHHHHHHh--hchhHH--HHhhHHH-HHHHHHHHHHHHHHHHHHHHHHHcccccCC-CC----
Confidence            3445567788999999988888885  567773  4677753 33333333332    2334444444  333 33    


Q ss_pred             cHHHHHHHHcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhcCCCCCCchhhHHHHHHHHHHHHhcCCCh
Q 026491           84 RYRDLAGHIYGRRAYALTWGLQYVNLFMINTGYIILAGQALKAAF--VLFWKDDHTMKLPYFIAIAGFVCALFAIGIPNL  161 (238)
Q Consensus        84 sY~~l~~~~~G~~~~~~v~~~~~i~~~g~~v~yli~~~~~l~~~~--~~~~~~~~~~~~~~~iii~~~~~~lpl~~l~~l  161 (238)
                      ..-..+++.+||+...+......+.......++....++.+..++  +.+.  ...+....+.+++..++ ..+ -.+..
T Consensus        74 G~y~~~~~~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~--~~~~~~~~~~~~~~~~~-~~i-n~~g~  149 (511)
T 4djk_A           74 GVFAWVSNTLGPRWGFAAISFGYLQIAIGFIPMLYFVLGALSYILKWPALN--EDPITKTIAALIILWAL-ALT-QFGGT  149 (511)
T ss_dssp             CHHHHHHHHHCHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHTTTTCGGGT--SCSSHHHHHHHHHHHHH-HHH-HHTCS
T ss_pred             ChhhhHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccc--cCcHHHHHHHHHHHHHH-HHH-HHhCh
Confidence            456677888999988888877777766666666666666664332  1111  11111122222221111 122 23444


Q ss_pred             hhHHHHHHHHHHHH-HHHHHHHHHHHhhcCC-CCCC-CcCCCCC-CcchhhhhhHhHHHHHHHHh-ccCchhhhhhcccC
Q 026491          162 SALGVWLGVSTVLS-TIYIVIAIWLSVRDGL-KNPA-RDYSIPG-TTATKIFESIGACANLVFAF-NTGMLPEIQVREEF  236 (238)
Q Consensus       162 ~~l~~~S~~~~~~~-~~~~~i~~~~~i~~~~-~~~~-~~~~~~~-~~~~~~~~~~~a~gi~~Faf-g~~v~p~I~~~M~~  236 (238)
                      |....+..+..... +...++.+...+.... .++. .+.+... .+.....+.+.++....|+| |......+.+|+||
T Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~G~e~~~~~a~E~k~  229 (511)
T 4djk_A          150 KYTARIAKVGFFAGILLPAFILIALAAIYLHSGAPVAIEMDSKTFFPDFSKVGTLVVFVAFILSYMGVEASATHVNEMSN  229 (511)
T ss_dssp             SSHHHHTHHHHHHTTHHHHHHHHHHHHHHTC------------CCCCCTTSTTTTTTHHHHHHHHTTGGGGTGGGSSSSC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCcccccCCCcccchHHHHHHHHHHHHhhHHHHHHHHHhccC
Confidence            55555544432211 1111111112221111 1110 0001100 11111123445677889999 48888899999998


Q ss_pred             CC
Q 026491          237 RS  238 (238)
Q Consensus       237 ~~  238 (238)
                      |.
T Consensus       230 P~  231 (511)
T 4djk_A          230 PG  231 (511)
T ss_dssp             CT
T ss_pred             cc
Confidence            74

>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus}

Probab=93.99  E-value=1.9  Score=39.35  Aligned_cols=148  Identities=15%  Similarity=0.144  Sum_probs=78.6

Q ss_pred             cccchhHHHHHHHHhhhhhh-hhhhhhHHhhhhhhhHHHHHHHHHHHHHH-HHHHHHHHhccccCCcccCcHHHHHHHHc
Q 026491           16 EMLDSWFQVGFVLTTGINSA-YVLGYPGTVMVPLGWIAGVVGLIIATIVS-LNANALIAKLHEFGGKRHIRYRDLAGHIY   93 (238)
Q Consensus        16 ~~~~s~~~a~~~l~~~~iG~-GiLalP~a~~~~~G~~~G~i~l~~~~~~~-~yt~~lL~~~~~~~~~~~~sY~~l~~~~~   93 (238)
                      .|+-++|...+.+..+.+++ -.+++|-. .-+.|+........  +.++ ......+.+...+.  +..|.+|.-+.-|
T Consensus        19 GR~l~~~~~~~s~~at~~Sa~~~lG~~g~-~y~~G~~~~~~~~~--~~~~~~i~~~~~~p~~~~~--~~~T~~e~l~~Rf   93 (530)
T 3dh4_A           19 GKSLPWWAVGASLIAANISAEQFIGMSGS-GYSIGLAIASYEWM--SAITLIIVGKYFLPIFIEK--GIYTIPEFVEKRF   93 (530)
T ss_dssp             CSCCCHHHHHHHHHHHHCSHHHHTHHHHH-HHHTCGGGHHHHHH--HHHHHHHHHHHTHHHHHHT--TCCSHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHH-HHHhChHHHHHHHH--HHHHHHHHHHHHHHHHHHc--CCccHHHHHHHHc
Confidence            45668888888887777766 67888877 56667642211111  1111 11122222222222  3578999999999


Q ss_pred             CccchhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhcCCChhhHHHHHHHHH
Q 026491           94 GRRAYALTWGLQYV-NLFMINTGYIILAGQALKAAFVLFWKDDHTMKLPYFIAIAGFVCALFAIGIPNLSALGVWLGVST  172 (238)
Q Consensus        94 G~~~~~~v~~~~~i-~~~g~~v~yli~~~~~l~~~~~~~~~~~~~~~~~~~iii~~~~~~lpl~~l~~l~~l~~~S~~~~  172 (238)
                      |++.|.+..+...+ ..+....+-+...|..++.++        .++...-+++.++++ +.-...--++...++..+=.
T Consensus        94 g~~~~~~~a~~~l~~~~~~~~~~~l~~~~~~~~~~~--------Gi~~~~~i~i~~~i~-~~Yt~~GGl~aV~~TD~iQ~  164 (530)
T 3dh4_A           94 NKKLKTILAVFWISLYIFVNLTSVLYLGGLALETIL--------GIPLMYSILGLALFA-LVYSIYGGLSAVVWTDVIQV  164 (530)
T ss_dssp             CHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHT--------TCCHHHHHHHHHHHH-HHTTC------CCSHHHHHH
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------CCCHHHHHHHHHHHH-HHHHHhcchHHHHHHHHHHH
Confidence            99888776655443 222223333444555555442        233333344555544 56667778888888887775


Q ss_pred             HHHHH
Q 026491          173 VLSTI  177 (238)
Q Consensus       173 ~~~~~  177 (238)
                      +..+.
T Consensus       165 ~im~~  169 (530)
T 3dh4_A          165 FFLVL  169 (530)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            54443

>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A

Probab=92.41  E-value=5.6  Score=36.77  Aligned_cols=147  Identities=16%  Similarity=0.131  Sum_probs=77.7

Q ss_pred             ccchhHHHHHHHHhhhhhh-hhhhhhHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhccccCCcccCcHHHHHHHHcCc
Q 026491           17 MLDSWFQVGFVLTTGINSA-YVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKLHEFGGKRHIRYRDLAGHIYGR   95 (238)
Q Consensus        17 ~~~s~~~a~~~l~~~~iG~-GiLalP~a~~~~~G~~~G~i~l~~~~~~~~yt~~lL~~~~~~~~~~~~sY~~l~~~~~G~   95 (238)
                      |+-+++.....+..+.+++ ..++.|-. .-+.|+........ .++......+.+.+...+.  +..|.+|.-+.=||+
T Consensus        49 R~l~~~~~~~Sl~at~~sa~t~lG~~g~-~y~~G~~~~~~~~~-~~~~~~~~~~~~~p~~~r~--~~~T~~e~l~~Rfg~  124 (593)
T 2xq2_A           49 KSLPWWAVGASLIAANISAEQFIGMSGS-GYSIGLAIASYEWM-SAITLIIVGKYFLPIFIEK--GIYTIPEFVEKRFNK  124 (593)
T ss_dssp             --CCHHHHHHHHHGGGSSHHHHHHHHHH-HHHTCGGGGHHHHH-HHHHHHHHHHTHHHHHHHT--TCCSHHHHHHHHTCH
T ss_pred             CCCCHHHHHHHHHHHHhcHHHHhhHhHH-HHHcCHHHHHHHHH-HHHHHHHHHHHHHHHHHhC--CCCCcHHHHHHHccC
Confidence            5668888888887766665 55788877 55667642211110 0000011112222222222  356899999988999


Q ss_pred             cchhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhcCCChhhHHHHHHHHHHH
Q 026491           96 RAYALTWGLQYV-NLFMINTGYIILAGQALKAAFVLFWKDDHTMKLPYFIAIAGFVCALFAIGIPNLSALGVWLGVSTVL  174 (238)
Q Consensus        96 ~~~~~v~~~~~i-~~~g~~v~yli~~~~~l~~~~~~~~~~~~~~~~~~~iii~~~~~~lpl~~l~~l~~l~~~S~~~~~~  174 (238)
                      +.|.+..+...+ ..+......+...|..++.++.        ++...-+++.++++ ..-..+--+|...++-.+-.+.
T Consensus       125 ~~~~~~ai~~l~~~~~~~~~~~l~~~~~~l~~~~G--------i~~~~~i~i~~~i~-~~Yt~~GGl~av~~TD~iQ~ii  195 (593)
T 2xq2_A          125 KLKTILAVFWISLYIFVNLTSVLYLGGLALETILG--------IPLMYSILGLALFA-LVYSIYGGLSAVVWTDVIQVFF  195 (593)
T ss_dssp             HHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHC--------CCHHHHHHHHHHHH-HHHHHTTC---CCHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--------ccHHHHHHHHHHHH-HHHHHhcchHHHHHHHHHHHHH
Confidence            887766654433 2333333344445666665541        33333344455544 5666778888888877776544


Q ss_pred             HH
Q 026491          175 ST  176 (238)
Q Consensus       175 ~~  176 (238)
                      .+
T Consensus       196 ml  197 (593)
T 2xq2_A          196 LV  197 (593)
T ss_dssp             HH
T ss_pred             HH
Confidence            33

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00