Citrus Sinensis ID: 026513

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------
Protein Sequence
MGEQCNWIKKTQQSFHPVEVTKGLWIVPEWGAPPDVQATNIILNPGLAFGSGEHATTKLCLLLLRRLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILSEQLPHIINRYSEFLEDILVSEMDDWTCVSGKKKRVKEDH
Secondary Structure (PSIPRED)
ccccHHHHHHHHHccccEEEEccEEEEcccccccccccEEEEEcccccccccccHHHHHHHHHHHcccccccEEEEEcccHHHHHHHHHHccccEEEEEEccHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccEEEEEccHHHHHHHHHHHHHHcccccEEEEEccccccHHHHHHHHHccccccEEEEEccEEEEEEEEccccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHcccEEEccEEEEEccccccccccEEEEEEcccccccccccHHHHHHHHHHHHHcccccEEEEccccHHHHHHHHHHHccccEEEEEccHHHHHHHHHHHHHccccHHHEEEEcccccccccccccHHccccccccccccccccccccccEEEHHHHHHHHHHHHHHHHHHcccccEEEEHHHHHHHHHHHHHHHHccccEcccEEcccEEEEEEEcccccccc
Coil and Loop (DISEMBL)
mgeqcnwikktqqsfhpvevtkglwivpewgappdvqatniilnpglafgsgehaTTKLCLLLLRRLIKGGElfldygtgsgILGIAAIKFgaamsvgadidpqAIKSAHQNAalnnigpkkmklhlvpdrtftasmnERVDGVVEDlsshkirgisqteKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILSEQLPHIINRYSEFLEDILVSEmddwtcvsgkkkrvkedh
Flexible Loop (DISEMBL)
mgeqcnwikktqqsfhpvEVTKGLWIVPEWGAPPDVQATNIILNPGLAFGSGEHATTKLCLLLLRRLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDlsshkirgisqtekYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILSEQLPHIINRYSEFLEDILVSEmddwtcvsgkkkrvkedh
Low Complexity Region (SEG)
MGEQCNWIKKTQQSFHPVEVTKGLWIVPEWGAPPDVQATNIILNPGLAFGSGEHATTKlcllllrrlIKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILSEQLPHIINRYSEFLEDILVSEMDDWTCVSGKKKRVKEDH
Disordered region (IsUnstruct)
****CNWIKKTQQSFHPVEVTKGLWIVPEWGAPPDVQATNIILNPGLAFGSGEHATTKLCLLLLRRLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIK*****AALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILSEQLPHIINRYSEFLEDILVSEMDDWTCV***********
Disordered Region (DISOPRED)
MGEQCNWIKKTQQSFHPVEVTKGLWIVPEWGAPPDVQATNIILNPGLAFGSGEHATTKLCLLLLRRLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILSEQLPHIINRYSEFLEDILVSEMDDWTCV****K******
Disordered Region (DISEMBL)
MGEQCNWIKKTQQSFHPVEVTKGLWIVPEWGAPPDVQATNIILNPGLAFGSGEHATTKLCLLLLRRLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILSEQLPHIINRYSEFLEDILVSEMDDWTC************
Disordered Region (DISPRO)
MGEQCNWIKKTQQSFHPVEVTKGLWIVPEWGAPPDVQATNIILNPGLAFGSGEHATTKLCLLLLRRLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILSEQLPHIINRYSEFLEDILVSEMDDWTCVSGKKK******
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGEQCNWIKKTQQSFHPVEVTKGLWIVPEWGAPPDVQATNIILNPGLAFGSGEHATTKLCLLLLRRLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILSEQLPHIINRYSEFLEDILVSEMDDWTCVSGKKKRVKEDH
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	237	2.2.26 [Sep-21-2011]
Q81ZZ9	313	Ribosomal protein L11 met	yes	no	0.881	0.667	0.380	2e-39
A4SJL7	292	Ribosomal protein L11 met	yes	no	0.852	0.691	0.377	2e-39
Q0AEV2	313	Ribosomal protein L11 met	yes	no	0.881	0.667	0.384	3e-39
Q3IIC0	293	Ribosomal protein L11 met	yes	no	0.848	0.686	0.395	8e-39
P60091	298	Ribosomal protein L11 met	yes	no	0.843	0.671	0.379	1e-38
C1DCV9	297	Ribosomal protein L11 met	yes	no	0.848	0.676	0.393	1e-38
Q9JXW2	295	Ribosomal protein L11 met	yes	no	0.843	0.677	0.379	3e-38
Q9JW08	295	Ribosomal protein L11 met	yes	no	0.843	0.677	0.375	3e-38
A0KNJ1	292	Ribosomal protein L11 met	yes	no	0.852	0.691	0.372	4e-38
A1KS36	295	Ribosomal protein L11 met	yes	no	0.843	0.677	0.375	5e-38

>sp|Q81ZZ9|PRMA_NITEU Ribosomal protein L11 methyltransferase OS=Nitrosomonas europaea (strain ATCC 19718 / NBRC 14298) GN=prmA PE=3 SV=1

 Score =  162 bits (411), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 86/226 (38%), Positives = 129/226 (57%), Gaps = 17/226 (7%)

Query: 6   NWIKKTQQSFHPVEVTKGLWIVPEWGAPPDVQATNIILNPGLAFGSGEHATTKLCLLLLR 65
           +W++ TQ  F P+ ++  LW+VP W  PPD  A ++ L+PGLAFG+G H TT+LCL  L 
Sbjct: 100 DWVRLTQAQFEPIRISSRLWVVPSWHEPPDPAAISLRLDPGLAFGTGSHPTTRLCLTWLD 159

Query: 66  RLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKL 125
           + ++ G+  LDYG GSGIL IAA+KFGA    G DIDP AI ++  NA  N   P ++  
Sbjct: 160 QFLQPGDSVLDYGCGSGILAIAALKFGADRVTGMDIDPNAITASLDNARNNFCDPDRL-- 217

Query: 126 HLVPDRTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYA 185
                  FT  +      +VED      R  ++     +V+ANIL NPL+ LA  ++   
Sbjct: 218 ------LFTTVLPP----LVED-----DRASAEWAPVTIVVANILANPLIMLAPVLMKAL 262

Query: 186 KPGAVVGISGILSEQLPHIINRYSEFLEDILVSEMDDWTCVSGKKK 231
           +PG  + +SGIL  Q   ++  YSE+ +  + ++   W  ++G+K 
Sbjct: 263 QPGGRIVLSGILETQADEVLQVYSEWFDMHIAAKEQGWVLLAGQKS 308

Methylates ribosomal protein L11.
Nitrosomonas europaea (strain ATCC 19718 / NBRC 14298) (taxid: 228410)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: -

>sp|A4SJL7|PRMA_AERS4 Ribosomal protein L11 methyltransferase OS=Aeromonas salmonicida (strain A449) GN=prmA PE=3 SV=1

 Score =  162 bits (410), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 86/228 (37%), Positives = 130/228 (57%), Gaps = 26/228 (11%)

Query: 3   EQCNWIKKTQQSFHPVEVTKGLWIVPEWGAPPDVQATNIILNPGLAFGSGEHATTKLCLL 62
           E  +W+++    FHP++  + LWI P W   P+  A N++L+PGLAFG+G H TT LCL 
Sbjct: 89  EDKDWVREWMDHFHPMQFGERLWICPSWRDVPNPDAVNVMLDPGLAFGTGTHPTTALCLQ 148

Query: 63  LLRRLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKK 122
            L  L   G+  +D+G GSGILGIAA+K GAA  +G DIDPQAI+++H NA  N +   +
Sbjct: 149 WLDGLDLAGKTVVDFGCGSGILGIAALKLGAARVIGIDIDPQAIQASHDNAERNGVA-GQ 207

Query: 123 MKLHLVPDRTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIV 182
           ++L+L  D+                          Q  + DVV+ANIL  PL +LA  I 
Sbjct: 208 IELYLPADQ-------------------------PQDVEADVVVANILAGPLRELAPLIA 242

Query: 183 SYAKPGAVVGISGILSEQLPHIINRYSEFLEDILVSEMDDWTCVSGKK 230
            + KPG+++ +SG+L  Q P +   Y ++ +    +  ++W  +SG+K
Sbjct: 243 GHGKPGSLMALSGVLESQAPELETIYGQWFDMDPTAVKEEWCRLSGRK 290

Methylates ribosomal protein L11.

Aeromonas salmonicida (strain A449) (taxid: 382245)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q0AEV2|PRMA_NITEC Ribosomal protein L11 methyltransferase OS=Nitrosomonas eutropha (strain C91) GN=prmA PE=3 SV=1

 Score =  161 bits (408), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 87/226 (38%), Positives = 130/226 (57%), Gaps = 17/226 (7%)

Query: 6   NWIKKTQQSFHPVEVTKGLWIVPEWGAPPDVQATNIILNPGLAFGSGEHATTKLCLLLLR 65
           +W++ TQ  F P++++  LW+VP W   PD  A N+ L+PGLAFG+G H TT+LCL  L 
Sbjct: 100 DWVRLTQAQFEPIKISSRLWVVPSWHDLPDPAAINLRLDPGLAFGTGSHPTTQLCLGWLD 159

Query: 66  RLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKL 125
           + +K G+  LDYG GSGIL IAA+K GA   +G DIDP AI ++ +NA  N     K+  
Sbjct: 160 KFLKPGDSVLDYGCGSGILAIAALKLGADRVMGVDIDPNAITASLENARNNLCDLDKL-- 217

Query: 126 HLVPDRTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYA 185
                 +FT +++    G   D   H +          VV+ANIL NPL+ LA  ++S  
Sbjct: 218 ------SFTTALSFSGGGDPADTRQHPVF---------VVVANILANPLIMLAPVLMSAL 262

Query: 186 KPGAVVGISGILSEQLPHIINRYSEFLEDILVSEMDDWTCVSGKKK 231
           +PG  + +SGIL  Q   ++  YSE+ +  + ++   W  ++G+K 
Sbjct: 263 QPGGRIVLSGILETQADEVLQIYSEWFDMQIAAKDQGWVLLAGRKS 308

Methylates ribosomal protein L11.

Nitrosomonas eutropha (strain C91) (taxid: 335283)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q3IIC0|PRMA_PSEHT Ribosomal protein L11 methyltransferase OS=Pseudoalteromonas haloplanktis (strain TAC 125) GN=prmA PE=3 SV=1

 Score =  160 bits (405), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 91/230 (39%), Positives = 130/230 (56%), Gaps = 29/230 (12%)

Query: 3   EQCNWIKKTQQSFHPVEVTKGLWIVPEWGAPPDVQATNIILNPGLAFGSGEHATTKLCLL 62
           E  +W ++   +FHP++  K LWI P W   PD  A N++L+PGLAFG+G HATT LCL 
Sbjct: 91  EDKDWEREWMDNFHPIQFGKRLWICPSWRDIPDPDAVNVLLDPGLAFGTGTHATTALCLK 150

Query: 63  LLRRLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKK 122
            L      G+  +D+G GSGILGIAAIK GA   +G DIDPQA++++  NA  N +   K
Sbjct: 151 WLESQDLTGKTVVDFGCGSGILGIAAIKLGAERMIGIDIDPQALEASLDNANRNGVA-DK 209

Query: 123 MKLHLVPDR-TFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHI 181
           ++++L  ++  F+A                           D+V+ANIL  PL +L   I
Sbjct: 210 LEVYLPENQPEFSA---------------------------DIVVANILAQPLRELHSVI 242

Query: 182 VSYAKPGAVVGISGILSEQLPHIINRYSEFLEDILVSEMDDWTCVSGKKK 231
           +   KPG  + +SGIL+EQ   + + Y+ F+E   ++   DWT VSG KK
Sbjct: 243 LGLLKPGGKIAMSGILTEQAQSVADVYAPFIELDDIAIEGDWTRVSGTKK 292

Methylates ribosomal protein L11.

Pseudoalteromonas haloplanktis (strain TAC 125) (taxid: 326442)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|P60091|PRMA_CHRVO Ribosomal protein L11 methyltransferase OS=Chromobacterium violaceum (strain ATCC 12472 / DSM 30191 / JCM 1249 / NBRC 12614 / NCIMB 9131 / NCTC 9757) GN=prmA PE=3 SV=1

 Score =  159 bits (402), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 87/229 (37%), Positives = 125/229 (54%), Gaps = 29/229 (12%)

Query: 3   EQCNWIKKTQQSFHPVEVTKGLWIVPEWGAPPDVQATNIILNPGLAFGSGEHATTKLCLL 62
           E+ +W++ TQ  F P+ ++  LWI P W   P   A N+ L+PGLAFG+G H TT+LCL 
Sbjct: 96  EEQDWVRLTQSQFEPIRISDRLWITPTWHEAPAPNAVNLQLDPGLAFGTGSHPTTRLCLQ 155

Query: 63  LLRRLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKK 122
            L + ++G E  LDYG GSGIL IAA+K GAA +VG DID QA++++  NA  N +    
Sbjct: 156 WLDKQLQGNESVLDYGCGSGILAIAALKLGAASAVGIDIDQQAVRASQDNAEQNGVKAD- 214

Query: 123 MKLHLVPDRTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIV 182
                +P+    A                         +YDVV+ANIL NPL  L D + 
Sbjct: 215 ---FFLPNANPAA-------------------------QYDVVLANILANPLRMLGDLLA 246

Query: 183 SYAKPGAVVGISGILSEQLPHIINRYSEFLEDILVSEMDDWTCVSGKKK 231
           S+ K G  + +SGIL+EQ   +   YS++ E       + WT ++G ++
Sbjct: 247 SHVKTGGRIVLSGILAEQADELSAIYSQWFEMDPPVFDEGWTRLTGTRR 295

Methylates ribosomal protein L11.

Chromobacterium violaceum (strain ATCC 12472 / DSM 30191 / JCM 1249 / NBRC 12614 / NCIMB 9131 / NCTC 9757) (taxid: 243365)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|C1DCV9|PRMA_LARHH Ribosomal protein L11 methyltransferase OS=Laribacter hongkongensis (strain HLHK9) GN=prmA PE=3 SV=1

 Score =  159 bits (402), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 90/229 (39%), Positives = 124/229 (54%), Gaps = 28/229 (12%)

Query: 3   EQCNWIKKTQQSFHPVEVTKGLWIVPEWGAPPDVQATNIILNPGLAFGSGEHATTKLCLL 62
           E  +W++ TQ  F P+ ++  LWI P W   PD  A N+ L+PGLAFG+G H TT+LCL 
Sbjct: 96  ESQDWVRLTQSQFDPIRISGRLWITPTWHDAPDANAINLALDPGLAFGTGSHPTTRLCLQ 155

Query: 63  LLRRLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKK 122
            L   I GGE  LDYG GSGIL IAAIK GA    G DIDPQA++++  NA  N +    
Sbjct: 156 WLDANICGGESVLDYGCGSGILAIAAIKLGATDVTGIDIDPQAVQASRDNAVQNQV---- 211

Query: 123 MKLHLVPDRTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIV 182
                      TA+      G+ + L   +        ++DV++ANIL NPL  L D + 
Sbjct: 212 -----------TAAF-----GLPDTLEDGR--------QFDVLVANILANPLRMLGDLLA 247

Query: 183 SYAKPGAVVGISGILSEQLPHIINRYSEFLEDILVSEMDDWTCVSGKKK 231
           S+ + G  + +SGIL EQ   +   YS + E       + WT +SG ++
Sbjct: 248 SHVRAGGRIVLSGILEEQAQELSELYSAWFEMDPPVFDEGWTRLSGVRR 296

Methylates ribosomal protein L11.

Laribacter hongkongensis (strain HLHK9) (taxid: 557598)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q9JXW2|PRMA_NEIMB Ribosomal protein L11 methyltransferase OS=Neisseria meningitidis serogroup B (strain MC58) GN=prmA PE=3 SV=1

 Score =  158 bits (400), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 87/229 (37%), Positives = 124/229 (54%), Gaps = 29/229 (12%)

Query: 3   EQCNWIKKTQQSFHPVEVTKGLWIVPEWGAPPDVQATNIILNPGLAFGSGEHATTKLCLL 62
           E  +W++ TQ  F P+ ++  LWI P W   P+  A N+ L+PGLAFG+G H TT+LCL 
Sbjct: 96  EDQDWVRLTQSQFDPIRISDRLWITPSWHEVPEGSAVNLRLDPGLAFGTGSHPTTRLCLK 155

Query: 63  LLRRLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKK 122
            L   +K GE  LDYG GSGIL IAA+K GA  +VG DID QA+++   NAA NN+  + 
Sbjct: 156 WLDTQLKNGESVLDYGCGSGILTIAALKLGAGFAVGVDIDEQAVRAGKDNAAQNNVDAQ- 214

Query: 123 MKLHLVPDRTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIV 182
                +PD                        G+ Q  ++DVV+ANIL NPL  L + + 
Sbjct: 215 ---FFLPD------------------------GLPQG-QFDVVVANILANPLRMLGEMLA 246

Query: 183 SYAKPGAVVGISGILSEQLPHIINRYSEFLEDILVSEMDDWTCVSGKKK 231
           +  K G  + +SG+L EQ   +   YS++ +       + W  +SG K+
Sbjct: 247 ARTKQGGRIVLSGLLDEQAEELGGIYSQWFDLDPAETEEGWARLSGVKR 295

Methylates ribosomal protein L11.

Neisseria meningitidis serogroup B (strain MC58) (taxid: 122586)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q9JW08|PRMA_NEIMA Ribosomal protein L11 methyltransferase OS=Neisseria meningitidis serogroup A / serotype 4A (strain Z2491) GN=prmA PE=3 SV=1

 Score =  158 bits (400), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 86/229 (37%), Positives = 124/229 (54%), Gaps = 29/229 (12%)

Query: 3   EQCNWIKKTQQSFHPVEVTKGLWIVPEWGAPPDVQATNIILNPGLAFGSGEHATTKLCLL 62
           E  +W++ TQ  F P+ +++ LWI P W   P+  A N+ L+PGLAFG+G H TT+LCL 
Sbjct: 96  EDQDWVRLTQAQFDPIRISERLWITPSWHEAPEDTAVNLRLDPGLAFGTGSHPTTRLCLK 155

Query: 63  LLRRLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKK 122
            L   +K GE  LDYG GSGIL IAA+K GA  +VG DID QA+++   NA  NN+  + 
Sbjct: 156 WLDTQLKNGESVLDYGCGSGILTIAALKLGAGFAVGVDIDEQAVRAGKDNAEQNNVDAQ- 214

Query: 123 MKLHLVPDRTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIV 182
                +PD                        G+ Q  ++DVV+ANIL NPL  L + + 
Sbjct: 215 ---FFLPD------------------------GLPQG-QFDVVVANILANPLRMLGEMLA 246

Query: 183 SYAKPGAVVGISGILSEQLPHIINRYSEFLEDILVSEMDDWTCVSGKKK 231
           +  K G  + +SG+L EQ   +   YS++ +       + W  +SG K+
Sbjct: 247 ARTKQGGRIVLSGLLDEQAEELGGIYSQWFDLDPAETEEGWARLSGTKR 295

Methylates ribosomal protein L11.

Neisseria meningitidis serogroup A / serotype 4A (strain Z2491) (taxid: 122587)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|A0KNJ1|PRMA_AERHH Ribosomal protein L11 methyltransferase OS=Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / NCIB 9240) GN=prmA PE=3 SV=1

 Score =  157 bits (398), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 85/228 (37%), Positives = 128/228 (56%), Gaps = 26/228 (11%)

Query: 3   EQCNWIKKTQQSFHPVEVTKGLWIVPEWGAPPDVQATNIILNPGLAFGSGEHATTKLCLL 62
           E  +W+++    FHP++  + LWI P W   P+  A N++L+PGLAFG+G H TT LCL 
Sbjct: 89  EDKDWVREWMDHFHPMQFGERLWICPSWRDVPNPDAVNVMLDPGLAFGTGTHPTTALCLQ 148

Query: 63  LLRRLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKK 122
            L  L   G+  +D+G GSGILGIAA+K GAA  +G DIDPQAI+++  NA  N +   +
Sbjct: 149 WLDGLDLAGKTVVDFGCGSGILGIAALKLGAARVIGIDIDPQAIQASRDNAERNGVA-DQ 207

Query: 123 MKLHLVPDRTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIV 182
           ++L+L  D+                          Q  + DVV+ANIL  PL +LA  I 
Sbjct: 208 IELYLPADQ-------------------------PQDVEADVVVANILAGPLRELAPLIA 242

Query: 183 SYAKPGAVVGISGILSEQLPHIINRYSEFLEDILVSEMDDWTCVSGKK 230
            + K G+++ +SG+L  Q P +   Y ++ E    +  ++W  +SG+K
Sbjct: 243 GHGKAGSLMALSGVLESQAPELETIYGQWFEMDPTAVKEEWCRLSGRK 290

Methylates ribosomal protein L11.

Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / NCIB 9240) (taxid: 380703)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|A1KS36|PRMA_NEIMF Ribosomal protein L11 methyltransferase OS=Neisseria meningitidis serogroup C / serotype 2a (strain ATCC 700532 / FAM18) GN=prmA PE=3 SV=1

 Score =  157 bits (398), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 86/229 (37%), Positives = 123/229 (53%), Gaps = 29/229 (12%)

Query: 3   EQCNWIKKTQQSFHPVEVTKGLWIVPEWGAPPDVQATNIILNPGLAFGSGEHATTKLCLL 62
           E  +W++ TQ  F P+ ++  LWI P W   P+  A N+ L+PGLAFG+G H TT+LCL 
Sbjct: 96  EDQDWVRLTQSQFDPIRISDRLWITPSWHEAPEGTAVNLRLDPGLAFGTGSHPTTRLCLK 155

Query: 63  LLRRLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKK 122
            L   +K GE  LDYG GSGIL IAA+K GA  +VG DID QA+++   NA  NN+  + 
Sbjct: 156 WLDTQLKNGESVLDYGCGSGILTIAALKLGAGSAVGVDIDEQAVRAGKDNAEQNNVDAQ- 214

Query: 123 MKLHLVPDRTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIV 182
                +PD                        G+ Q  ++DVV+ANIL NPL  L + + 
Sbjct: 215 ---FFLPD------------------------GLPQG-QFDVVVANILANPLRMLGEMLA 246

Query: 183 SYAKPGAVVGISGILSEQLPHIINRYSEFLEDILVSEMDDWTCVSGKKK 231
           +  K G  + +SG+L EQ   +   YS++ +       + W  +SG K+
Sbjct: 247 ARTKQGGRIVLSGLLDEQAEELGGIYSQWFDLDPAETEEGWARLSGTKR 295

Methylates ribosomal protein L11.

Neisseria meningitidis serogroup C / serotype 2a (strain ATCC 700532 / FAM18) (taxid: 272831)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	237
224117126	322	predicted protein [Populus trichocarpa]	0.949	0.698	0.725	6e-81
356514667	381	PREDICTED: ribosomal protein L11 methylt	0.898	0.559	0.646	6e-81
449507116	390	PREDICTED: ribosomal protein L11 methylt	0.928	0.564	0.630	5e-80
449456729	390	PREDICTED: ribosomal protein L11 methylt	0.915	0.556	0.634	1e-79
225461518	367	PREDICTED: ribosomal protein L11 methylt	0.949	0.613	0.668	7e-79
388507954	397	unknown [Lotus japonicus]	0.953	0.569	0.649	6e-78
297792815	368	hypothetical protein ARALYDRAFT_495472 [	0.907	0.584	0.623	1e-69
218197035	409	hypothetical protein OsI_20472 [Oryza sa	0.974	0.564	0.532	2e-69
15238878	371	ribosomal protein L11 methyltransferase-	0.911	0.582	0.616	3e-69
297724225	409	Os05g0497675 [Oryza sativa Japonica Grou	0.974	0.564	0.532	4e-69

>gi|224117126|ref|XP_002317484.1| predicted protein [Populus trichocarpa] gi|222860549|gb|EEE98096.1| predicted protein [Populus trichocarpa]

 Score =  306 bits (783), Expect = 6e-81,   Method: Compositional matrix adjust.
 Identities = 164/226 (72%), Positives = 190/226 (84%), Gaps = 1/226 (0%)

Query: 1   MGEQCNWIKKTQQSFHPVEVTKGLWIVPEWGAPPDVQATNIILNPGLAFGSGEHATTKLC 60
           +G+Q  W++KTQ+SFHPVEVT+GLWIVPEW +PPDVQATNIILNPGLAFG+GEH TTKLC
Sbjct: 51  LGDQYEWVRKTQESFHPVEVTEGLWIVPEWRSPPDVQATNIILNPGLAFGTGEHPTTKLC 110

Query: 61  LLLLRRLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGP 120
           LLLL++LIKG ELFLDYGTGSG+L IAA+KFGAA+SVG DIDPQAI SA  NA LN+IGP
Sbjct: 111 LLLLKKLIKGEELFLDYGTGSGVLAIAALKFGAALSVGFDIDPQAIMSARHNATLNSIGP 170

Query: 121 KKMKLHLVPDRTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLNPLLQLADH 180
           + M+LHLVP +T  +S++ R D +V++ S      IS TEKYDVVIANILLNPLL LADH
Sbjct: 171 ETMELHLVPGKT-CSSLDGREDEMVKEQSCCGTGVISGTEKYDVVIANILLNPLLDLADH 229

Query: 181 IVSYAKPGAVVGISGILSEQLPHIINRYSEFLEDILVSEMDDWTCV 226
           IVSYAKP AVVGISGI+SEQ   I++RYS  LEDI VSEMD W CV
Sbjct: 230 IVSYAKPRAVVGISGIISEQCSCIVDRYSMLLEDISVSEMDGWACV 275

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356514667|ref|XP_003526025.1| PREDICTED: ribosomal protein L11 methyltransferase-like [Glycine max]

 Score =  306 bits (783), Expect = 6e-81,   Method: Compositional matrix adjust.
 Identities = 148/229 (64%), Positives = 180/229 (78%), Gaps = 16/229 (6%)

Query: 6   NWIKKTQQSFHPVEVTKGLWIVPEWGAPPDVQATNIILNPGLAFGSGEHATTKLCLLLLR 65
           +W+K++Q+S HPV+VT+GLW+VP+W  PPDVQATNII+NPGLAFG+GEHATTKLCLLLL 
Sbjct: 164 DWMKRSQESLHPVQVTEGLWVVPKWCTPPDVQATNIIVNPGLAFGTGEHATTKLCLLLLH 223

Query: 66  RLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKL 125
             IKGGE  LDYGTG+GIL IAA+KFGAA +VG D+D +AI SA QNA LNNIG  KM+L
Sbjct: 224 GCIKGGEHILDYGTGTGILAIAALKFGAAFAVGVDVDSEAIASASQNAYLNNIGQDKMQL 283

Query: 126 HLVPDRTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYA 185
           HLV  +T ++S N+   G                EK+DVV+ANILLNPLL LAD I+S+A
Sbjct: 284 HLVASKTSSSSKNDLTFG----------------EKFDVVVANILLNPLLDLADQIISHA 327

Query: 186 KPGAVVGISGILSEQLPHIINRYSEFLEDILVSEMDDWTCVSGKKKRVK 234
           KPGAVVG+SGILSEQ+ +II RYS FLE I VS+MDDW CVSG+KK+ +
Sbjct: 328 KPGAVVGLSGILSEQVQYIIERYSPFLEGIEVSKMDDWACVSGRKKKFE 376

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449507116|ref|XP_004162937.1| PREDICTED: ribosomal protein L11 methyltransferase-like [Cucumis sativus]

 Score =  303 bits (775), Expect = 5e-80,   Method: Compositional matrix adjust.
 Identities = 150/238 (63%), Positives = 180/238 (75%), Gaps = 18/238 (7%)

Query: 1   MGEQCNWIKKTQQSFHPVEVTKGLWIVPEWGAPPDVQATNIILNPGLAFGSGEHATTKLC 60
           + +Q +W+KK+Q+SF PV+V +GLWIVPEW  P DV ATNIIL+PGLAFG GEH TTKLC
Sbjct: 168 IDDQYDWLKKSQESFKPVKVMEGLWIVPEWTTPSDVHATNIILHPGLAFGMGEHPTTKLC 227

Query: 61  LLLLRRLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGP 120
           L LL  L+KGGE FLDYGTG+G+L IA++KFGAA SVG D+DPQAI+S  +NAALNNI P
Sbjct: 228 LQLLHSLVKGGEYFLDYGTGTGVLAIASLKFGAAFSVGIDVDPQAIESGQKNAALNNIEP 287

Query: 121 KKMKLHLVPDRTFTASMNERVDGVVEDLSSHK--IRGISQTEKYDVVIANILLNPLLQLA 178
           +K++LHLVP                 DL+ +K     IS  E +D+VIANIL NPLL LA
Sbjct: 288 EKLQLHLVP----------------SDLAEYKNCEAYISGKENFDIVIANILQNPLLDLA 331

Query: 179 DHIVSYAKPGAVVGISGILSEQLPHIINRYSEFLEDILVSEMDDWTCVSGKKKRVKED 236
           D++VSYAKP AVV +SGILSEQ+P II RYS+FLE I VS MDDW CVSGKKKR+  D
Sbjct: 332 DYVVSYAKPEAVVALSGILSEQVPAIIERYSQFLEGISVSTMDDWACVSGKKKRLLSD 389

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449456729|ref|XP_004146101.1| PREDICTED: ribosomal protein L11 methyltransferase-like [Cucumis sativus]

 Score =  301 bits (772), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 149/235 (63%), Positives = 179/235 (76%), Gaps = 18/235 (7%)

Query: 1   MGEQCNWIKKTQQSFHPVEVTKGLWIVPEWGAPPDVQATNIILNPGLAFGSGEHATTKLC 60
           + +Q +W+KK+Q+SF PV+V +GLWIVPEW  P DV ATNIIL+PGLAFG GEH TTKLC
Sbjct: 168 IDDQYDWLKKSQESFKPVKVMEGLWIVPEWTTPSDVHATNIILHPGLAFGMGEHPTTKLC 227

Query: 61  LLLLRRLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGP 120
           L LL  L+KGGE FLDYGTG+G+L IA++KFGAA SVG D+DPQAI+S  +NAALNNI P
Sbjct: 228 LQLLHSLVKGGEYFLDYGTGTGVLAIASLKFGAAFSVGIDVDPQAIESGQKNAALNNIEP 287

Query: 121 KKMKLHLVPDRTFTASMNERVDGVVEDLSSHK--IRGISQTEKYDVVIANILLNPLLQLA 178
           +K++LHLVP                 DL+ +K     IS  E +D+VIANIL NPLL LA
Sbjct: 288 EKLQLHLVP----------------SDLAEYKNCEAYISGKENFDIVIANILQNPLLDLA 331

Query: 179 DHIVSYAKPGAVVGISGILSEQLPHIINRYSEFLEDILVSEMDDWTCVSGKKKRV 233
           D++VSYAKP AVV +SGILSEQ+P II RYS+FLE I VS MDDW CVSGKKKR+
Sbjct: 332 DYVVSYAKPEAVVALSGILSEQVPAIIERYSQFLEGISVSTMDDWACVSGKKKRL 386

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225461518|ref|XP_002282613.1| PREDICTED: ribosomal protein L11 methyltransferase [Vitis vinifera] gi|302142971|emb|CBI20266.3| unnamed protein product [Vitis vinifera]

 Score =  299 bits (765), Expect = 7e-79,   Method: Compositional matrix adjust.
 Identities = 155/232 (66%), Positives = 181/232 (78%), Gaps = 7/232 (3%)

Query: 1   MGEQCNWIKKTQQSFHPVEVTKGLWIVPEWGAPPDVQATNIILNPGLAFGSGEHATTKLC 60
           +GEQ +WIKKTQ+SF PVEVT+GLWIVPEW  PPD  ATNIILNPG AFG+GEH TTKLC
Sbjct: 138 VGEQYDWIKKTQESFCPVEVTEGLWIVPEWRTPPDAHATNIILNPGFAFGTGEHPTTKLC 197

Query: 61  LLLLRRLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGP 120
           LLLL  LIKGGE FLDYGTGSGIL IAA+KFGAA SVG D+DPQAI +A QNAALN I P
Sbjct: 198 LLLLHGLIKGGERFLDYGTGSGILAIAALKFGAASSVGIDVDPQAITAATQNAALNKISP 257

Query: 121 KKMKLHLVPDRTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLNPLLQLADH 180
            KM+L LVP        + R   VVE  S + +   +++E +D+VIANILLNPLL LAD 
Sbjct: 258 NKMQLTLVPP-------DGRTHEVVEGQSPNSMGVTTESESFDIVIANILLNPLLDLADD 310

Query: 181 IVSYAKPGAVVGISGILSEQLPHIINRYSEFLEDILVSEMDDWTCVSGKKKR 232
           IVS+AKPGAVV +SGI+SEQ+P+I+ RYS  LE I V+E+DDW CV G K+R
Sbjct: 311 IVSHAKPGAVVAVSGIISEQVPYIMERYSPLLESISVTEIDDWACVCGTKRR 362

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388507954|gb|AFK42043.1| unknown [Lotus japonicus]

 Score =  296 bits (757), Expect = 6e-78,   Method: Compositional matrix adjust.
 Identities = 148/228 (64%), Positives = 177/228 (77%), Gaps = 2/228 (0%)

Query: 6   NWIKKTQQSFHPVEVTKGLWIVPEWGAP--PDVQATNIILNPGLAFGSGEHATTKLCLLL 63
           NW+K+ Q+SF PVEVTK LW+VP+W AP  PD +ATNIIL+PGLAFG+GEHATTKLCLLL
Sbjct: 170 NWMKRAQESFCPVEVTKDLWVVPKWSAPRPPDDKATNIILDPGLAFGTGEHATTKLCLLL 229

Query: 64  LRRLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKM 123
           LR  +KGGE  LDYGTG+GIL IAA+KFGAA +VG DID  AI SA +NAALNNI P KM
Sbjct: 230 LRGCVKGGEYILDYGTGTGILAIAALKFGAAFAVGVDIDSDAIASASENAALNNIEPDKM 289

Query: 124 KLHLVPDRTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVS 183
           +L L+     ++   +   GVVE   + +I+ ++   KYD VIAN+LLNPLL LAD IVS
Sbjct: 290 QLLLIASDASSSFKADSKSGVVEGERTCEIQTVTGQYKYDAVIANMLLNPLLDLADQIVS 349

Query: 184 YAKPGAVVGISGILSEQLPHIINRYSEFLEDILVSEMDDWTCVSGKKK 231
            AKPGAV+G+SGILSEQ+ +II RYS FLE I VS MD+W CVSGKKK
Sbjct: 350 CAKPGAVIGLSGILSEQVQYIIRRYSPFLEGIEVSHMDEWACVSGKKK 397

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297792815|ref|XP_002864292.1| hypothetical protein ARALYDRAFT_495472 [Arabidopsis lyrata subsp. lyrata] gi|297310127|gb|EFH40551.1| hypothetical protein ARALYDRAFT_495472 [Arabidopsis lyrata subsp. lyrata]

 Score =  268 bits (686), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 144/231 (62%), Positives = 175/231 (75%), Gaps = 16/231 (6%)

Query: 1   MGEQCNWIKKTQQSFHPVEVTKGLWIVPEWGAPPDVQATNIILNPGLAFGSGEHATTKLC 60
           +G++ +WI K Q+ F PVE+ + LWIVPEW +PP  +A NIILNPG AFG+GEH TTKLC
Sbjct: 148 IGDEQDWITKNQELFQPVEIAEMLWIVPEWTSPPVTEAVNIILNPGFAFGTGEHPTTKLC 207

Query: 61  LLLLRRLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGP 120
           LLLL+ LIKGGE FLDYGTGSGIL IAA+KFGAA SVG DIDP AIKSA  NAALNNI  
Sbjct: 208 LLLLQSLIKGGEAFLDYGTGSGILAIAALKFGAASSVGVDIDPLAIKSASHNAALNNIPL 267

Query: 121 KKMKLHLVPDRTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLNPLLQLADH 180
           +K++LHL P                ED SS +   + + +++DVVIANILLNP+++LADH
Sbjct: 268 EKLELHLAPS---------------EDSSSGREIPLRK-QQFDVVIANILLNPVMELADH 311

Query: 181 IVSYAKPGAVVGISGILSEQLPHIINRYSEFLEDILVSEMDDWTCVSGKKK 231
           I+S+AKPGA +GISGILSEQL +II RYS FLEDI V+ + DW C+SG KK
Sbjct: 312 ILSFAKPGATIGISGILSEQLTNIIERYSPFLEDISVATIGDWVCMSGTKK 362

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|218197035|gb|EEC79462.1| hypothetical protein OsI_20472 [Oryza sativa Indica Group]

 Score =  268 bits (684), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 123/231 (53%), Positives = 163/231 (70%)

Query: 1   MGEQCNWIKKTQQSFHPVEVTKGLWIVPEWGAPPDVQATNIILNPGLAFGSGEHATTKLC 60
           +G+QC+W+   Q+++   +V  GLW++P+W  PPD QA NII+NPGLAFG+GEH TTKLC
Sbjct: 178 VGKQCDWVTVVQETYESTKVIDGLWVIPKWRTPPDPQAINIIINPGLAFGTGEHPTTKLC 237

Query: 61  LLLLRRLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGP 120
           LLLLR  +KGGE FLDYGTG+G+LGIAA+K GAA+S G DIDPQA+ SA +N  LN I  
Sbjct: 238 LLLLRETVKGGERFLDYGTGTGVLGIAALKMGAALSTGIDIDPQAVTSACENMMLNGIDS 297

Query: 121 KKMKLHLVPDRTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLNPLLQLADH 180
            KM ++LVP    +A     +D   E+  +  +   S    YD+V ANILLNPLL+L + 
Sbjct: 298 NKMLVYLVPTNAQSACFPSNIDKSEENRPTGNLELKSSKGSYDIVAANILLNPLLELVED 357

Query: 181 IVSYAKPGAVVGISGILSEQLPHIINRYSEFLEDILVSEMDDWTCVSGKKK 231
           IV YAK G +V +SGILSEQ+P +   YS +LE+I VSE+D W C+ G ++
Sbjct: 358 IVGYAKSGGIVAVSGILSEQVPKVEEAYSRYLENISVSEIDGWACLRGNRR 408

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15238878|ref|NP_200203.1| ribosomal protein L11 methyltransferase-like protein [Arabidopsis thaliana] gi|10177254|dbj|BAB10722.1| ribosomal protein L11 methyltransferase-like protein [Arabidopsis thaliana] gi|332009046|gb|AED96429.1| ribosomal protein L11 methyltransferase-like protein [Arabidopsis thaliana]

 Score =  267 bits (682), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 143/232 (61%), Positives = 172/232 (74%), Gaps = 16/232 (6%)

Query: 1   MGEQCNWIKKTQQSFHPVEVTKGLWIVPEWGAPPDVQATNIILNPGLAFGSGEHATTKLC 60
           MG++ +WI K Q  F PVE+ + LWIVPEW +PP  +A NIILNPG AFG+GEH TTKLC
Sbjct: 151 MGDELDWITKNQDLFQPVEIAERLWIVPEWTSPPVAEAVNIILNPGFAFGTGEHPTTKLC 210

Query: 61  LLLLRRLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGP 120
           LLLL+ LIKGGE FLDYGTGSGIL IAA+KFGAA SVG DIDP AI SA  NAALNNI  
Sbjct: 211 LLLLQSLIKGGEAFLDYGTGSGILAIAALKFGAASSVGVDIDPLAINSAIHNAALNNIPL 270

Query: 121 KKMKLHLVPDRTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLNPLLQLADH 180
           +K++LHL P               +E+ SS +   + Q E++DVVIANILLNP++ LADH
Sbjct: 271 EKLELHLAP---------------IENSSSGREIPL-QKEQFDVVIANILLNPVMNLADH 314

Query: 181 IVSYAKPGAVVGISGILSEQLPHIINRYSEFLEDILVSEMDDWTCVSGKKKR 232
           I+S+ KPGA +GISGILSEQLP++  RYS FLEDI V+ + DW C+SG KK 
Sbjct: 315 ILSFVKPGATIGISGILSEQLPNVRERYSPFLEDISVATIGDWVCMSGTKKE 366

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297724225|ref|NP_001174476.1| Os05g0497675 [Oryza sativa Japonica Group] gi|255676467|dbj|BAH93204.1| Os05g0497675 [Oryza sativa Japonica Group]

 Score =  266 bits (681), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 123/231 (53%), Positives = 163/231 (70%)

Query: 1   MGEQCNWIKKTQQSFHPVEVTKGLWIVPEWGAPPDVQATNIILNPGLAFGSGEHATTKLC 60
           +G+QC+W+   Q+++   +V  GLW++P+W  PPD QA NII+NPGLAFG+GEH TTKLC
Sbjct: 178 VGKQCDWVTVVQETYESTKVIDGLWVIPKWRTPPDPQAINIIINPGLAFGTGEHPTTKLC 237

Query: 61  LLLLRRLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGP 120
           LLLLR  +KGGE FLDYGTG+G+LGIAA+K GAA+S G DIDPQA+ SA +N  LN I  
Sbjct: 238 LLLLRETVKGGERFLDYGTGTGVLGIAALKMGAALSNGIDIDPQAVTSACENMMLNGIDS 297

Query: 121 KKMKLHLVPDRTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLNPLLQLADH 180
            KM ++LVP    +A     +D   E+  +  +   S    YD+V ANILLNPLL+L + 
Sbjct: 298 NKMLVYLVPTNAQSACFPSNIDKSEENRPTGNLELKSSKGSYDIVAANILLNPLLELVED 357

Query: 181 IVSYAKPGAVVGISGILSEQLPHIINRYSEFLEDILVSEMDDWTCVSGKKK 231
           IV YAK G +V +SGILSEQ+P +   YS +LE+I VSE+D W C+ G ++
Sbjct: 358 IVGYAKSGGIVAVSGILSEQVPKVEEAYSRYLENISVSEIDGWACLRGNRR 408

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	237
TAIR|locus:2154739	371	AT5G53920 [Arabidopsis thalian	0.907	0.579	0.588	3.2e-65
TIGR_CMR|VC_0293	295	VC_0293 "ribosomal protein L11	0.540	0.433	0.426	1.2e-24
UNIPROTKB|P0A8T1	293	prmA "methyltransferase for 50	0.540	0.436	0.418	1.6e-24
TIGR_CMR|SO_0395	293	SO_0395 "ribosomal protein L11	0.540	0.436	0.403	6.1e-23
TIGR_CMR|CPS_0540	293	CPS_0540 "ribosomal protein L1	0.540	0.436	0.387	1e-22
TIGR_CMR|BA_4537	312	BA_4537 "ribosomal protein L11	0.468	0.355	0.380	1.6e-17
TIGR_CMR|CJE_1260	281	CJE_1260 "ribosomal protein L1	0.476	0.402	0.362	1.3e-16
TIGR_CMR|GSU_0447	299	GSU_0447 "ribosomal protein L1	0.527	0.418	0.379	2.9e-16
TIGR_CMR|CHY_0417	305	CHY_0417 "ribosomal protein L1	0.620	0.481	0.318	4.7e-16
TIGR_CMR|GSU_3320	198	GSU_3320 "ribosomal protein L1	0.443	0.530	0.412	1.3e-11

TAIR|locus:2154739 AT5G53920 [Arabidopsis thaliana (taxid:3702)]

 Score = 664 (238.8 bits), Expect = 3.2e-65, P = 3.2e-65
 Identities = 136/231 (58%), Positives = 164/231 (70%)

Query:     1 MGEQCNWIKKTQQSFHPVEVTKGLWIVPEWGAPPDVQATNIILNPGLAFGSGEHATTKXX 60
             MG++ +WI K Q  F PVE+ + LWIVPEW +PP  +A NIILNPG AFG+GEH TTK  
Sbjct:   151 MGDELDWITKNQDLFQPVEIAERLWIVPEWTSPPVAEAVNIILNPGFAFGTGEHPTTKLC 210

Query:    61 XXXXXXXIKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGP 120
                    IKGGE FLDYGTGSGIL IAA+KFGAA SVG DIDP AI SA  NAALNNI  
Sbjct:   211 LLLLQSLIKGGEAFLDYGTGSGILAIAALKFGAASSVGVDIDPLAINSAIHNAALNNIPL 270

Query:   121 KKMKLHLVPDRTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLNPLLQLADH 180
             +K++LHL P               +E+ SS +   + Q E++DVVIANILLNP++ LADH
Sbjct:   271 EKLELHLAP---------------IENSSSGREIPL-QKEQFDVVIANILLNPVMNLADH 314

Query:   181 IVSYAKPGAVVGISGILSEQLPHIINRYSEFLEDILVSEMDDWTCVSGKKK 231
             I+S+ KPGA +GISGILSEQLP++  RYS FLEDI V+ + DW C+SG KK
Sbjct:   315 ILSFVKPGATIGISGILSEQLPNVRERYSPFLEDISVATIGDWVCMSGTKK 365

GO:0005737 "cytoplasm" evidence=IEA

GO:0006479 "protein methylation" evidence=IEA

GO:0008276 "protein methyltransferase activity" evidence=IEA

GO:0006744 "ubiquinone biosynthetic process" evidence=RCA

TIGR_CMR|VC_0293 VC_0293 "ribosomal protein L11 methyltransferase" [Vibrio cholerae O1 biovar El Tor (taxid:686)]

 Score = 281 (104.0 bits), Expect = 1.2e-24, P = 1.2e-24
 Identities = 55/129 (42%), Positives = 80/129 (62%)

Query:     3 EQCNWIKKTQQSFHPVEVTKGLWIVPEWGAPPDVQATNIILNPGLAFGSGEHATTKXXXX 62
             E  +W ++   +FHP++  + LWI P W   PD QA N++L+PGLAFG+G H TT     
Sbjct:    92 EDKDWEREWMDNFHPMQFGRRLWICPSWREVPDPQAVNVMLDPGLAFGTGTHPTTALCLE 151

Query:    63 XXXXXIKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKK 122
                     G+  +D+G GSGIL IAAIK GAA  +G DIDPQA+ ++  NAA N +   +
Sbjct:   152 WLDNLDLSGKTVIDFGCGSGILAIAAIKLGAAKVIGIDIDPQALLASKDNAARNGV-EDQ 210

Query:   123 MKLHLVPDR 131
             ++++L  D+
Sbjct:   211 IEVYLPKDQ 219

GO:0006464 "cellular protein modification process" evidence=ISS

GO:0008168 "methyltransferase activity" evidence=ISS

GO:0042254 "ribosome biogenesis" evidence=ISS

UNIPROTKB|P0A8T1 prmA "methyltransferase for 50S ribosomal subunit protein L11" [Escherichia coli K-12 (taxid:83333)]

 Score = 280 (103.6 bits), Expect = 1.6e-24, P = 1.6e-24
 Identities = 54/129 (41%), Positives = 79/129 (61%)

Query:     3 EQCNWIKKTQQSFHPVEVTKGLWIVPEWGAPPDVQATNIILNPGLAFGSGEHATTKXXXX 62
             E  +W ++   +FHP+   + LWI P W   PD  A N++L+PGLAFG+G H TT     
Sbjct:    91 EDKDWEREWMDNFHPMRFGERLWICPSWRDVPDENAVNVMLDPGLAFGTGTHPTTSLCLQ 150

Query:    63 XXXXXIKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKK 122
                     G+  +D+G GSGIL IAA+K GAA ++G DIDPQAI+++  NA  N +  + 
Sbjct:   151 WLDSLDLTGKTVIDFGCGSGILAIAALKLGAAKAIGIDIDPQAIQASRDNAERNGVSDR- 209

Query:   123 MKLHLVPDR 131
             ++L+L  D+
Sbjct:   210 LELYLPKDQ 218

GO:0016279 "protein-lysine N-methyltransferase activity" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0018023 "peptidyl-lysine trimethylation" evidence=IDA;IMP

GO:0018012 "N-terminal peptidyl-alanine trimethylation" evidence=IMP

GO:0005737 "cytoplasm" evidence=IEA

TIGR_CMR|SO_0395 SO_0395 "ribosomal protein L11 methyltransferase" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 265 (98.3 bits), Expect = 6.1e-23, P = 6.1e-23
 Identities = 52/129 (40%), Positives = 76/129 (58%)

Query:     3 EQCNWIKKTQQSFHPVEVTKGLWIVPEWGAPPDVQATNIILNPGLAFGSGEHATTKXXXX 62
             E  +W+++   ++HP++  K LWI P W   PD  A N+IL+PGLAFG+G H TT     
Sbjct:    91 EDKDWVREWMDNYHPIQFGKRLWICPSWREVPDPTAVNVILDPGLAFGTGTHPTTALCLE 150

Query:    63 XXXXXIKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKK 122
                      E  +D+G GSGIL +AA+K GA    G DID QAI ++  NA  N++  + 
Sbjct:   151 WLDSLDLSNEEVIDFGCGSGILAVAALKLGAKKVTGIDIDYQAIDASKANAERNDVADQ- 209

Query:   123 MKLHLVPDR 131
             ++L+L  D+
Sbjct:   210 LELYLPEDQ 218

GO:0006412 "translation" evidence=ISS

GO:0006464 "cellular protein modification process" evidence=ISS

GO:0008168 "methyltransferase activity" evidence=ISS

TIGR_CMR|CPS_0540 CPS_0540 "ribosomal protein L11 methyltransferase" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 263 (97.6 bits), Expect = 1.0e-22, P = 1.0e-22
 Identities = 50/129 (38%), Positives = 79/129 (61%)

Query:     3 EQCNWIKKTQQSFHPVEVTKGLWIVPEWGAPPDVQATNIILNPGLAFGSGEHATTKXXXX 62
             E  +W ++   +FHP++  + LW+ P W   PD +A N++L+PGLAFG+G H TT     
Sbjct:    92 EDKDWEREWMDNFHPMKFGERLWVCPSWRDVPDPEAVNVMLDPGLAFGTGTHPTTALCLT 151

Query:    63 XXXXXIKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKK 122
                      +  +D+G GSGIL +AA+K GA   +G DIDPQA++++  NA  NN+  + 
Sbjct:   152 WLDGLDLQDKTVVDFGCGSGILSLAALKLGAKKVIGIDIDPQALQASLANAERNNVSDR- 210

Query:   123 MKLHLVPDR 131
             ++L+L  D+
Sbjct:   211 LELYLPKDQ 219

GO:0006464 "cellular protein modification process" evidence=ISS

GO:0008757 "S-adenosylmethionine-dependent methyltransferase activity" evidence=ISS

TIGR_CMR|BA_4537 BA_4537 "ribosomal protein L11 methyltransferase" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 214 (80.4 bits), Expect = 1.6e-17, P = 1.6e-17
 Identities = 43/113 (38%), Positives = 63/113 (55%)

Query:     6 NWIKKTQQSFHPVEVTKGLWIVPEWG--APPDVQATNIILNPGLAFGSGEHATTKXXXXX 63
             +W    ++ +HPV+++    IVP W    P   +   I L+PG+AFG+G H TT      
Sbjct:   109 DWATAWKKYYHPVQISDTFTIVPTWEEYTPSSPEEKIIELDPGMAFGTGTHPTTTMCIRA 168

Query:    64 XXXXIKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALN 116
                 ++ G+  +D GTGSG+L IAA K GA+     D+DP A++SA  N  LN
Sbjct:   169 LEKTVQPGDTIIDVGTGSGVLSIAAAKLGASSVQAYDLDPVAVESAEMNVRLN 221

GO:0006464 "cellular protein modification process" evidence=ISS

GO:0008168 "methyltransferase activity" evidence=ISS

TIGR_CMR|CJE_1260 CJE_1260 "ribosomal protein L11 methyltransferase, putative" [Campylobacter jejuni RM1221 (taxid:195099)]

 Score = 161 (61.7 bits), Expect = 1.3e-16, Sum P(2) = 1.3e-16
 Identities = 42/116 (36%), Positives = 57/116 (49%)

Query:     3 EQCNWIKKTQQSFHPVEVTKGLWIVPEWGAPPDVQATNIILNPGLAFGSGEHATTKXXXX 62
             E  +WI++ ++   P+ V   ++I   W         NI +NP LAFGSG H +T     
Sbjct:    81 ENKDWIQEYKKGIKPILVDN-VYIHTTWQEEKK-NCINIKINPALAFGSGHHESTYSCVK 138

Query:    63 XXXXXIKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNI 118
                   K     LD G GSGILGI   KFG  + +  D D  AI S+ +NA LN +
Sbjct:   139 FLQKFSKSKLRALDLGCGSGILGIIMAKFGCNVEI-CDTDELAIDSSLENARLNGV 193

GO:0006464 "cellular protein modification process" evidence=ISS

GO:0008757 "S-adenosylmethionine-dependent methyltransferase activity" evidence=ISS

TIGR_CMR|GSU_0447 GSU_0447 "ribosomal protein L11 methyltransferase" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 202 (76.2 bits), Expect = 2.9e-16, P = 2.9e-16
 Identities = 49/129 (37%), Positives = 69/129 (53%)

Query:     6 NWIKKTQQSFHPVEVTKGLWIVPEWGA-PPDVQATNIILNPGLAFGSGEHATTKXXXXXX 64
             +W    +Q F P  + + L I P W    P+     I L+PG+AFG+G H TT+      
Sbjct:   100 DWATGWRQHFVPTRIGRHLVIKPTWEPFAPEPGDQVIELDPGMAFGTGTHPTTRLCLEAL 159

Query:    65 XXXIKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMK 124
                 +   + LD GTGSGIL IAA++ GA   +G DIDP A+  A +N ALN +  + + 
Sbjct:   160 ETLGRPDRV-LDVGTGSGILAIAAVRLGARQVIGTDIDPDAVIVAGENCALNGVEVELVT 218

Query:   125 --LHLVPDR 131
               L L+P R
Sbjct:   219 TPLALIPGR 227

GO:0006464 "cellular protein modification process" evidence=ISS

GO:0008757 "S-adenosylmethionine-dependent methyltransferase activity" evidence=ISS

GO:0042254 "ribosome biogenesis" evidence=ISS

TIGR_CMR|CHY_0417 CHY_0417 "ribosomal protein L11 methyltransferase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 200 (75.5 bits), Expect = 4.7e-16, P = 4.7e-16
 Identities = 49/154 (31%), Positives = 82/154 (53%)

Query:     6 NWIKKTQQSFHPVEVTKGLWIVPEWGA-PPDVQATNII-LNPGLAFGSGEHATTKXXXXX 63
             +W    ++ F PVEV + L I P W   P   +   II ++PG+AFG+G H TT      
Sbjct:   103 SWANSWKKYFKPVEVGEFL-IKPTWEKLPSGKEDKKIIEIDPGMAFGTGTHVTTALVLEA 161

Query:    64 XXXXIKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKM 123
                 +  G++ +D GTGSGIL IA+   GA      DIDP A+K A +N ++N +   + 
Sbjct:   162 LPKYVSPGKVVVDVGTGSGILAIASALLGAEKIYALDIDPVAVKVARENISINRL---ED 218

Query:   124 KLHLVPDRTFTASMNERVDGVVEDLSSHKIRGIS 157
             K+ ++ +       N+ VD ++ ++ +  I+ ++
Sbjct:   219 KITVI-ENDLLHGFNQTVDVIIANIIAAVIKELA 251

GO:0006464 "cellular protein modification process" evidence=ISS

GO:0008757 "S-adenosylmethionine-dependent methyltransferase activity" evidence=ISS

TIGR_CMR|GSU_3320 GSU_3320 "ribosomal protein L11 methyltransferase, putative" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 158 (60.7 bits), Expect = 1.3e-11, P = 1.3e-11
 Identities = 45/109 (41%), Positives = 55/109 (50%)

Query:    15 FHPVEVTKGLWIVPEWGAPPDVQATNIILNPGLAFGSGEHATTKXXXXXXXXXIKG--GE 72
             F P  V  G  IVPE    P  +   +I+    AFGSGEH TT          I G  G 
Sbjct:     6 FTPFTVG-GFIIVPEDAPLPLGEHIPLIMGKKGAFGSGEHETT-ASCLEELERIPGLTGM 63

Query:    73 LFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPK 121
               LD G+G+GIL IAA++ GAA  V  DIDP+A  S   N  LN +  +
Sbjct:    64 RGLDLGSGTGILAIAAVRLGAASVVAVDIDPKAAASCAANVRLNGVADR 112

GO:0006464 "cellular protein modification process" evidence=ISS

GO:0008168 "methyltransferase activity" evidence=ISS

GO:0042254 "ribosome biogenesis" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.1.1	0.691

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	fgenesh4_pg.C_LG_XI000943	hypothetical protein (322 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	gw1.I.4175.1	hypothetical protein (226 aa)	•						•		0.600
	grail3.2975000201	Predicted protein (158 aa)	•						•		0.589
	gw1.I.3103.1	hypothetical protein (176 aa)							•		0.505
	eugene3.32270002	annotation not avaliable (228 aa)	•						•		0.419

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	237
PRK00517	250	PRK00517, prmA, ribosomal protein L11 methyltransf	2e-75
pfam06325	294	pfam06325, PrmA, Ribosomal protein L11 methyltrans	2e-72
COG2264	300	COG2264, PrmA, Ribosomal protein L11 methylase [Tr	2e-59
TIGR00406	288	TIGR00406, prmA, ribosomal protein L11 methyltrans	3e-51
COG2890	280	COG2890, HemK, Methylase of polypeptide chain rele	1e-09
PRK14968	188	PRK14968, PRK14968, putative methyltransferase; Pr	3e-08
COG2263	198	COG2263, COG2263, Predicted RNA methylase [Transla	4e-07
COG3897	218	COG3897, COG3897, Predicted methyltransferase [Gen	5e-07
cd02440	107	cd02440, AdoMet_MTases, S-adenosylmethionine-depen	7e-07
TIGR03534	251	TIGR03534, RF_mod_PrmC, protein-(glutamine-N5) met	2e-06
PRK09328	275	PRK09328, PRK09328, N5-glutamine S-adenosyl-L-meth	2e-06
COG1092	393	COG1092, COG1092, Predicted SAM-dependent methyltr	2e-06
pfam05175	170	pfam05175, MTS, Methyltransferase small domain	2e-05
PRK14967	223	PRK14967, PRK14967, putative methyltransferase; Pr	5e-05
pfam12847	104	pfam12847, Methyltransf_18, Methyltransferase doma	8e-05
pfam13847	151	pfam13847, Methyltransf_31, Methyltransferase doma	1e-04
COG2520	341	COG2520, COG2520, Predicted methyltransferase [Gen	2e-04
pfam08242	98	pfam08242, Methyltransf_12, Methyltransferase doma	3e-04
TIGR00537	179	TIGR00537, hemK_rel_arch, HemK-related putative me	4e-04
COG2227	243	COG2227, UbiG, 2-polyprenyl-3-methyl-5-hydroxy-6-m	0.001
COG2813	300	COG2813, RsmC, 16S RNA G1207 methylase RsmC [Trans	0.001
pfam02475	199	pfam02475, Met_10, Met-10+ like-protein	0.004

>gnl|CDD|234786 PRK00517, prmA, ribosomal protein L11 methyltransferase; Reviewed

 Score =  228 bits (584), Expect = 2e-75
 Identities = 88/227 (38%), Positives = 123/227 (54%), Gaps = 32/227 (14%)

Query: 6   NWIKKTQQSFHPVEVTKGLWIVPEWGAPPDVQATNIILNPGLAFGSGEHATTKLCLLLLR 65
           +W ++ ++ FHP+ +   LWIVP W  PPD    NI L+PG+AFG+G H TT+LCL  L 
Sbjct: 55  DWEREWKKYFHPIRIGDRLWIVPSWEDPPDPDEINIELDPGMAFGTGTHPTTRLCLEALE 114

Query: 66  RLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKL 125
           +L+  G+  LD G GSGIL IAA K GA   +  DIDPQA+++A +NA LN +   ++ +
Sbjct: 115 KLVLPGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAELNGV---ELNV 171

Query: 126 HLVPDRTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYA 185
           +L                                 K DV++ANIL NPLL+LA  +    
Sbjct: 172 YLPQG----------------------------DLKADVIVANILANPLLELAPDLARLL 203

Query: 186 KPGAVVGISGILSEQLPHIINRYSEFLEDIL-VSEMDDWTCVSGKKK 231
           KPG  + +SGIL EQ   ++  Y E    +  V E  +W  + GKKK
Sbjct: 204 KPGGRLILSGILEEQADEVLEAYEEAGFTLDEVLERGEWVALVGKKK 250

Length = 250

>gnl|CDD|218990 pfam06325, PrmA, Ribosomal protein L11 methyltransferase (PrmA)

 Score =  222 bits (567), Expect = 2e-72
 Identities = 94/226 (41%), Positives = 129/226 (57%), Gaps = 27/226 (11%)

Query: 6   NWIKKTQQSFHPVEVTKGLWIVPEWGAPPDVQATNIILNPGLAFGSGEHATTKLCLLLLR 65
           +W +  ++ FHPV + + L IVP W   P+  A NI L+PG+AFG+G H TT LCL  L 
Sbjct: 96  DWARAWKKYFHPVRIGERLTIVPSWEDYPEPDAVNIELDPGMAFGTGTHPTTALCLEALE 155

Query: 66  RLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKL 125
            L+K GE  LD G GSGIL IAA+K GA   VG DIDP A+++A +NA LN +   ++++
Sbjct: 156 SLVKPGETVLDVGCGSGILAIAALKLGAKKVVGVDIDPVAVRAAKENAELNGVEA-QLEV 214

Query: 126 HLVPDRTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYA 185
           +L                + E              K DVV+ANIL +PL++LA  I +  
Sbjct: 215 YL-------------PGDLPE-------------GKADVVVANILADPLIELAPDIYALV 248

Query: 186 KPGAVVGISGILSEQLPHIINRYSEFLEDILVSEMDDWTCVSGKKK 231
           KPG  + +SGIL EQ   +   YS+  E I V E ++W C+ GKKK
Sbjct: 249 KPGGYLILSGILEEQADDVAEAYSQGFELITVEEREEWVCIVGKKK 294

This family consists of several Ribosomal protein L11 methyltransferase (EC:2.1.1.-) sequences. Length = 294

>gnl|CDD|225173 COG2264, PrmA, Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]

 Score =  189 bits (481), Expect = 2e-59
 Identities = 85/228 (37%), Positives = 122/228 (53%), Gaps = 26/228 (11%)

Query: 6   NWIKKTQQSFHPVEVTKGLWIVPEW-GAPPDVQATNIILNPGLAFGSGEHATTKLCLLLL 64
           +W ++ ++ FHPV + +   IVP W   P      NI L+PGLAFG+G H TT LCL  L
Sbjct: 97  DWEREWKKYFHPVRIGERFVIVPSWREYPEPSDELNIELDPGLAFGTGTHPTTSLCLEAL 156

Query: 65  RRLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMK 124
            +L+K G+  LD G GSGIL IAA K GA   VG DIDPQA+++A +NA LN        
Sbjct: 157 EKLLKKGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARENARLNG------- 209

Query: 125 LHLVPDRTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSY 184
                           V+ +V+      +  + +   +DV++ANIL   L++LA  I   
Sbjct: 210 ----------------VELLVQAKGFL-LLEVPENGPFDVIVANILAEVLVELAPDIKRL 252

Query: 185 AKPGAVVGISGILSEQLPHIINRYSEF-LEDILVSEMDDWTCVSGKKK 231
            KPG  + +SGIL +Q   +   Y +   E + V E ++W  + GK+K
Sbjct: 253 LKPGGRLILSGILEDQAESVAEAYEQAGFEVVEVLEREEWVAIVGKRK 300

Length = 300

>gnl|CDD|232960 TIGR00406, prmA, ribosomal protein L11 methyltransferase

 Score =  167 bits (425), Expect = 3e-51
 Identities = 78/219 (35%), Positives = 111/219 (50%), Gaps = 26/219 (11%)

Query: 6   NWIKKTQQSFHPVEVTKGLWIVPEW-GAPPDVQATNIILNPGLAFGSGEHATTKLCLLLL 64
           +W +  + +FHPV+  K  WI P W   P D  A  I+L+PGLAFG+G H TT LCL  L
Sbjct: 94  DWERAWKDNFHPVQFGKRFWICPSWRDVPSDEDALIIMLDPGLAFGTGTHPTTSLCLEWL 153

Query: 65  RRLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMK 124
             L    +  +D G GSGIL IAA+K GAA  VG DIDP A++SA +NA LN +      
Sbjct: 154 EDLDLKDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAELNQV------ 207

Query: 125 LHLVPDRTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSY 184
                DR             ++    +  + I    K DV++ANIL   + +L       
Sbjct: 208 ----SDR-------------LQVKLIYLEQPIE--GKADVIVANILAEVIKELYPQFSRL 248

Query: 185 AKPGAVVGISGILSEQLPHIINRYSEFLEDILVSEMDDW 223
            KPG  + +SGIL  Q   + + Y +    + + + ++W
Sbjct: 249 VKPGGWLILSGILETQAQSVCDAYEQGFTVVEIRQREEW 287

Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis [Protein synthesis, Ribosomal proteins: synthesis and modification]. Length = 288

>gnl|CDD|225443 COG2890, HemK, Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]

 Score = 57.0 bits (138), Expect = 1e-09
 Identities = 32/108 (29%), Positives = 45/108 (41%), Gaps = 27/108 (25%)

Query: 62  LLLRRLIKGGELFLDYGTGSGILGIAAIKFGAAMSV-GADIDPQAIKSAHQNAALNNIGP 120
             L  L++  +  LD GTGSG + IA  K G    V   DI P A+  A +NA  N +  
Sbjct: 102 AALALLLQLDKRILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGL-- 159

Query: 121 KKMKLHLVPDRTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIAN 168
                              RV  V  DL    +RG     K+D++++N
Sbjct: 160 ------------------VRVLVVQSDLFE-PLRG-----KFDLIVSN 183

Length = 280

>gnl|CDD|237872 PRK14968, PRK14968, putative methyltransferase; Provisional

 Score = 51.8 bits (125), Expect = 3e-08
 Identities = 37/108 (34%), Positives = 49/108 (45%), Gaps = 25/108 (23%)

Query: 62  LLLRRL-IKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGP 120
           LL      K G+  L+ GTGSGI+ I A K      VG DI+P A++ A  NA LNNI  
Sbjct: 14  LLAENAVDKKGDRVLEVGTGSGIVAIVAAK-NGKKVVGVDINPYAVECAKCNAKLNNIR- 71

Query: 121 KKMKLHLVPDRTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIAN 168
                            N  V+ +  DL     RG    +K+DV++ N
Sbjct: 72  -----------------NNGVEVIRSDLFE-PFRG----DKFDVILFN 97

Length = 188

>gnl|CDD|225172 COG2263, COG2263, Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

 Score = 48.5 bits (116), Expect = 4e-07
 Identities = 22/51 (43%), Positives = 31/51 (60%), Gaps = 1/51 (1%)

Query: 63  LLRRLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNA 113
            LR  ++G  + LD G G+GIL I A   GA+  +  DIDP+A++ A  NA
Sbjct: 39  YLRGDLEGKTV-LDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANA 88

Length = 198

>gnl|CDD|226413 COG3897, COG3897, Predicted methyltransferase [General function prediction only]

 Score = 48.6 bits (116), Expect = 5e-07
 Identities = 22/47 (46%), Positives = 28/47 (59%)

Query: 75  LDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPK 121
           LD G GSG++ IAA + GAA  V ADIDP   ++   NAA N +   
Sbjct: 84  LDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAAANGVSIL 130

Length = 218

>gnl|CDD|100107 cd02440, AdoMet_MTases, S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

 Score = 46.3 bits (110), Expect = 7e-07
 Identities = 29/122 (23%), Positives = 46/122 (37%), Gaps = 27/122 (22%)

Query: 74  FLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTF 133
            LD G G+G L +A      A   G DI P A++ A + AA                   
Sbjct: 2   VLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALL---------------- 45

Query: 134 TASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYA----KPGA 189
                + V+ +  D            E +DV+I++  L+ L++     +  A    KPG 
Sbjct: 46  ----ADNVEVLKGDAEELPPEAD---ESFDVIISDPPLHHLVEDLARFLEEARRLLKPGG 98

Query: 190 VV 191
           V+
Sbjct: 99  VL 100

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). Length = 107

>gnl|CDD|234248 TIGR03534, RF_mod_PrmC, protein-(glutamine-N5) methyltransferase, release factor-specific

 Score = 47.5 bits (114), Expect = 2e-06
 Identities = 26/83 (31%), Positives = 36/83 (43%), Gaps = 5/83 (6%)

Query: 64  LRRLIKGGELFLDYGTGSGILGIAAIKFGAAMSV-GADIDPQAIKSAHQNAALNNIGPKK 122
           L RL KG    LD GTGSG + +A  K      V   DI P+A+  A +NAA   +    
Sbjct: 81  LERLKKGPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLD--- 137

Query: 123 MKLHLVPDRTFTASMNERVDGVV 145
             +  +    F      + D +V
Sbjct: 138 -NVEFLQSDWFEPLPGGKFDLIV 159

Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3 [Protein fate, Protein modification and repair]. Length = 251

>gnl|CDD|236467 PRK09328, PRK09328, N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

 Score = 47.5 bits (114), Expect = 2e-06
 Identities = 24/84 (28%), Positives = 35/84 (41%), Gaps = 5/84 (5%)

Query: 63  LLRRLIKGGELFLDYGTGSGILGIA-AIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPK 121
           L   L+K     LD GTGSG + +A A +   A     DI P+A+  A +NA        
Sbjct: 101 LEALLLKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHGLGA-- 158

Query: 122 KMKLHLVPDRTFTASMNERVDGVV 145
             ++  +    F      R D +V
Sbjct: 159 --RVEFLQGDWFEPLPGGRFDLIV 180

Length = 275

>gnl|CDD|224017 COG1092, COG1092, Predicted SAM-dependent methyltransferases [General function prediction only]

 Score = 47.3 bits (113), Expect = 2e-06
 Identities = 26/108 (24%), Positives = 42/108 (38%), Gaps = 25/108 (23%)

Query: 62  LLLRRLIKGGELFLD---YGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNI 118
             L  L  G    L+   Y TG     + A   GA+     D+  +A++ A +NA LN +
Sbjct: 210 RALGELAAGKR-VLNLFSY-TGGF--SVHAALGGASEVTSVDLSKRALEWARENAELNGL 265

Query: 119 GPKKMKLHLVPDRTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVI 166
              + +                V  V + L   + RG    EK+D++I
Sbjct: 266 DGDRHRF--------------IVGDVFKWLRKAERRG----EKFDLII 295

Length = 393

>gnl|CDD|203189 pfam05175, MTS, Methyltransferase small domain

 Score = 43.3 bits (103), Expect = 2e-05
 Identities = 24/60 (40%), Positives = 32/60 (53%), Gaps = 4/60 (6%)

Query: 62  LLLRRL--IKGGELFLDYGTGSGILGIAAIKFGAAMSV-GADIDPQAIKSAHQNAALNNI 118
           LLL  L    GG+  LD G G G+LG A  K    + V   DI+ +A++SA  N A N +
Sbjct: 22  LLLSHLPKPLGGK-VLDLGCGYGVLGAALAKRSPDLEVTMVDINARALESARANLAANGL 80

This domain is found in ribosomal RNA small subunit methyltransferase C as well as other methyltransferases . Length = 170

>gnl|CDD|184931 PRK14967, PRK14967, putative methyltransferase; Provisional

 Score = 42.7 bits (101), Expect = 5e-05
 Identities = 29/111 (26%), Positives = 37/111 (33%), Gaps = 30/111 (27%)

Query: 62  LLLRRLIKGGEL----FLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNN 117
           LL   L   G       LD  TGSG L +AA   GA      DI  +A++SA  NA L  
Sbjct: 24  LLADALAAEGLGPGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALLAG 83

Query: 118 IGPKKMKLHLVPDRTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIAN 168
                     V            V+                   +DVV++N
Sbjct: 84  ----------VDVDVRRGDWARAVEF----------------RPFDVVVSN 108

Length = 223

>gnl|CDD|221804 pfam12847, Methyltransf_18, Methyltransferase domain

 Score = 40.4 bits (95), Expect = 8e-05
 Identities = 30/125 (24%), Positives = 44/125 (35%), Gaps = 25/125 (20%)

Query: 71  GELFLDYGTGSGILGIAAIKFGAAMSV-GADIDPQAIKSAHQNAALNNIGPKKMKLHLVP 129
           G   LD G G+G L I   +      V G D+ P+ ++ A +NA L              
Sbjct: 2   GARVLDIGCGTGSLAIELARLFPGARVTGVDLSPEMLELARENAKLAL------------ 49

Query: 130 DRTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGA 189
                     R+  V  D            E +D V        LL+L D + S  KPG 
Sbjct: 50  --------GPRITFVQGDAPDAL----DLLEGFDAVFIGGGGGDLLELLDALASLLKPGG 97

Query: 190 VVGIS 194
            + ++
Sbjct: 98  RLVLN 102

Protein in this family function as methyltransferases. Length = 104

>gnl|CDD|222415 pfam13847, Methyltransf_31, Methyltransferase domain

 Score = 40.5 bits (95), Expect = 1e-04
 Identities = 45/169 (26%), Positives = 69/169 (40%), Gaps = 32/169 (18%)

Query: 68  IKGGELFLDYGTGSGILG--IAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKL 125
           +K G   LD G G+G L   +A      A  VG DI  +AI+ A +NA    +G + ++ 
Sbjct: 1   LKSGIKVLDLGCGTGYLTFILAEKLGPGAEVVGIDISEEAIEKAKENAK--KLGYENVEF 58

Query: 126 HLVPDRTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLN--PLLQLA-DHIV 182
                            G +E+L   ++        +DVVI+N +LN  P      + I+
Sbjct: 59  IQ---------------GDIEELPQLQLED----NSFDVVISNEVLNHLPDPDKVLEEII 99

Query: 183 SYAKPGAVVGISGILSEQLPHIINRYSEFLEDILVSEMDDWTCVSGKKK 231
              KPG      G+L    P +++     LED+            GKKK
Sbjct: 100 RVLKPG------GVLIVSDPVLLSELPALLEDLERLYAGVLEGAIGKKK 142

This family appears to be have methyltransferase activity. Length = 151

>gnl|CDD|225318 COG2520, COG2520, Predicted methyltransferase [General function prediction only]

 Score = 41.5 bits (98), Expect = 2e-04
 Identities = 23/73 (31%), Positives = 30/73 (41%), Gaps = 10/73 (13%)

Query: 44  NPGLAFGSGEHATTKLCLLLLRRLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDP 103
           +P L   S E A        +  L+K GE  LD   G G   I   K G       DI+P
Sbjct: 172 SPRL---STERA-------RVAELVKEGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINP 221

Query: 104 QAIKSAHQNAALN 116
            A++   +N  LN
Sbjct: 222 DAVEYLKENIRLN 234

Length = 341

>gnl|CDD|219760 pfam08242, Methyltransf_12, Methyltransferase domain

 Score = 38.9 bits (91), Expect = 3e-04
 Identities = 27/121 (22%), Positives = 43/121 (35%), Gaps = 27/121 (22%)

Query: 75  LDYGTGSGILGIAAIK-FGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTF 133
           LD G G+G L  A ++        G DI P A+++A +  A   +               
Sbjct: 1   LDIGCGTGTLLRALLEALPGLEYTGVDISPAALEAAAERLAALGLLD------------- 47

Query: 134 TASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILL---NPLLQLADHIVSYAKPGAV 190
                 RV   V D              +DVV+A+ +L        +  ++    KPG V
Sbjct: 48  ----AVRVRLDVLDAIDLDP------GSFDVVVASNVLHHLADPRAVLRNLRRLLKPGGV 97

Query: 191 V 191
           +
Sbjct: 98  L 98

Members of this family are SAM dependent methyltransferases. Length = 98

>gnl|CDD|129628 TIGR00537, hemK_rel_arch, HemK-related putative methylase

 Score = 39.8 bits (93), Expect = 4e-04
 Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 2/60 (3%)

Query: 61  LLLLRRLI-KGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIG 119
           LLL   L     +  L+ G G+G++ I     G  + +  DI+P A+K   +NA LNN+G
Sbjct: 9   LLLEANLRELKPDDVLEIGAGTGLVAIRLKGKGKCI-LTTDINPFAVKELRENAKLNNVG 67

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes [Unknown function, Enzymes of unknown specificity]. Length = 179

>gnl|CDD|225137 COG2227, UbiG, 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]

 Score = 38.9 bits (91), Expect = 0.001
 Identities = 43/183 (23%), Positives = 64/183 (34%), Gaps = 41/183 (22%)

Query: 19  EVTKGLWIVPEWGAPPDVQATNIILNPG-LAFGSGEHATTKLCLLLLRRLIKGGELFLDY 77
           E+ K   +   W  P         +NP  L +   E A  +  L  LR         LD 
Sbjct: 16  ELDKFEALASRWWDPEGEFKPLHKINPLRLDYIR-EVARLRFDLPGLR--------VLDV 66

Query: 78  GTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASM 137
           G G GIL     + GA++  G D   + I+ A  +A  + +         +  R  T   
Sbjct: 67  GCGGGILSEPLARLGASV-TGIDASEKPIEVAKLHALESGV--------NIDYRQAT--- 114

Query: 138 NERVDGVVEDLSSHKIRGISQTEKYDVVIANILL----NPLLQLADHIVSYAKPGAVVGI 193
                  VEDL        S   ++DVV    +L    +P            KPG ++ +
Sbjct: 115 -------VEDL-------ASAGGQFDVVTCMEVLEHVPDP-ESFLRACAKLVKPGGILFL 159

Query: 194 SGI 196
           S I
Sbjct: 160 STI 162

Length = 243

>gnl|CDD|225370 COG2813, RsmC, 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]

 Score = 38.8 bits (91), Expect = 0.001
 Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 2/59 (3%)

Query: 62  LLLRRLI-KGGELFLDYGTGSGILGIAAIKFGAAMSVG-ADIDPQAIKSAHQNAALNNI 118
           LLL  L    G   LD G G G+LG+   K      +   D++ +A++SA +N A N +
Sbjct: 149 LLLETLPPDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGV 207

Length = 300

>gnl|CDD|202251 pfam02475, Met_10, Met-10+ like-protein

 Score = 36.9 bits (86), Expect = 0.004
 Identities = 25/92 (27%), Positives = 40/92 (43%), Gaps = 11/92 (11%)

Query: 26  IVPEWGAPPDVQATNIILNPGLAFGSGEHATTKLCLLLLRRLIKGGELFLDYGTGSGILG 85
           I  E G    +  + +  +P L    GE          + +L+K GE+ +D   G G   
Sbjct: 66  IHKENGCRFKIDVSKVYFSPRLI---GERER-------IAKLVKEGEVVVDMFAGIGPFS 115

Query: 86  IAAIKFGAAMSVGA-DIDPQAIKSAHQNAALN 116
           I   K   A  V A +++P+A+K   +N  LN
Sbjct: 116 IPIAKHSKAKRVYAVELNPEAVKYLKENIKLN 147

The methionine-10 mutant allele of N. crassa codes for a protein of unknown function. However, homologous proteins have been found in yeast suggesting this protein may be involved in methionine biosynthesis, transport and/or utilisation. Length = 199

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	237
COG2264	300	PrmA Ribosomal protein L11 methylase [Translation,	100.0
PF06325	295	PrmA: Ribosomal protein L11 methyltransferase (Prm	100.0
PRK00517	250	prmA ribosomal protein L11 methyltransferase; Revi	100.0
TIGR00406	288	prmA ribosomal protein L11 methyltransferase. Ribo	100.0
PF05175	170	MTS: Methyltransferase small domain; InterPro: IPR	99.83
PRK09489	342	rsmC 16S ribosomal RNA m2G1207 methyltransferase;	99.77
COG2813	300	RsmC 16S RNA G1207 methylase RsmC [Translation, ri	99.76
PF12847	112	Methyltransf_18: Methyltransferase domain; PDB: 3G	99.75
COG2227	243	UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-	99.73
PRK15001	378	SAM-dependent 23S ribosomal RNA mG1835 methyltrans	99.72
TIGR03533	284	L3_gln_methyl protein-(glutamine-N5) methyltransfe	99.71
COG2226	238	UbiE Methylase involved in ubiquinone/menaquinone	99.71
PRK11805	307	N5-glutamine S-adenosyl-L-methionine-dependent met	99.7
PRK13168	443	rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe	99.7
PRK14966	423	unknown domain/N5-glutamine S-adenosyl-L-methionin	99.69
TIGR00537	179	hemK_rel_arch HemK-related putative methylase. The	99.69
PRK08287	187	cobalt-precorrin-6Y C(15)-methyltransferase; Valid	99.68
PRK14967	223	putative methyltransferase; Provisional	99.68
PRK12335	287	tellurite resistance protein TehB; Provisional	99.68
COG4123	248	Predicted O-methyltransferase [General function pr	99.67
PRK15128	396	23S rRNA m(5)C1962 methyltransferase; Provisional	99.67
TIGR00138	181	gidB 16S rRNA methyltransferase GidB. GidB (glucos	99.67
COG2890	280	HemK Methylase of polypeptide chain release factor	99.66
TIGR03704	251	PrmC_rel_meth putative protein-(glutamine-N5) meth	99.66
PF13659	117	Methyltransf_26: Methyltransferase domain; PDB: 3G	99.66
PF01209	233	Ubie_methyltran: ubiE/COQ5 methyltransferase famil	99.66
PRK03522	315	rumB 23S rRNA methyluridine methyltransferase; Rev	99.66
COG1092	393	Predicted SAM-dependent methyltransferases [Genera	99.66
PRK15451	247	tRNA cmo(5)U34 methyltransferase; Provisional	99.66
PF13847	152	Methyltransf_31: Methyltransferase domain; PDB: 3T	99.65
PRK00107	187	gidB 16S rRNA methyltransferase GidB; Reviewed	99.65
COG2230	283	Cfa Cyclopropane fatty acid synthase and related m	99.64
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	99.63
TIGR00536	284	hemK_fam HemK family putative methylases. The gene	99.63
COG2242	187	CobL Precorrin-6B methylase 2 [Coenzyme metabolism	99.63
PF02353	273	CMAS: Mycolic acid cyclopropane synthetase; InterP	99.63
PRK11207	197	tellurite resistance protein TehB; Provisional	99.62
TIGR02085	374	meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer	99.62
COG2265	432	TrmA SAM-dependent methyltransferases related to t	99.61
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	99.61
PRK10909	199	rsmD 16S rRNA m(2)G966-methyltransferase; Provisio	99.61
TIGR03534	251	RF_mod_PrmC protein-(glutamine-N5) methyltransfera	99.61
TIGR00740	239	methyltransferase, putative. A simple BLAST search	99.6
PLN02244	340	tocopherol O-methyltransferase	99.6
PRK00121	202	trmB tRNA (guanine-N(7)-)-methyltransferase; Revie	99.6
PF10672	286	Methyltrans_SAM: S-adenosylmethionine-dependent me	99.6
KOG1270	282	consensus Methyltransferases [Coenzyme transport a	99.59
TIGR02469	124	CbiT precorrin-6Y C5,15-methyltransferase (decarbo	99.59
PF08241	95	Methyltransf_11: Methyltransferase domain; InterPr	99.59
TIGR02752	231	MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me	99.59
PRK14968	188	putative methyltransferase; Provisional	99.58
TIGR00477	195	tehB tellurite resistance protein TehB. Part of a	99.58
PTZ00098	263	phosphoethanolamine N-methyltransferase; Provision	99.58
PLN02233	261	ubiquinone biosynthesis methyltransferase	99.58
PRK11036	255	putative S-adenosyl-L-methionine-dependent methylt	99.57
TIGR00479	431	rumA 23S rRNA (uracil-5-)-methyltransferase RumA.	99.57
PRK00377	198	cbiT cobalt-precorrin-6Y C(15)-methyltransferase;	99.57
TIGR00080	215	pimt protein-L-isoaspartate(D-aspartate) O-methylt	99.57
PLN02396	322	hexaprenyldihydroxybenzoate methyltransferase	99.56
PRK13944	205	protein-L-isoaspartate O-methyltransferase; Provis	99.55
KOG1271	227	consensus Methyltransferases [General function pre	99.55
PRK05031	362	tRNA (uracil-5-)-methyltransferase; Validated	99.55
PRK09328	275	N5-glutamine S-adenosyl-L-methionine-dependent met	99.55
TIGR00091	194	tRNA (guanine-N(7)-)-methyltransferase. In E. coli	99.55
PRK11873	272	arsM arsenite S-adenosylmethyltransferase; Reviewe	99.54
PRK10258	251	biotin biosynthesis protein BioC; Provisional	99.54
TIGR02143	353	trmA_only tRNA (uracil-5-)-methyltransferase. This	99.54
TIGR01177	329	conserved hypothetical protein TIGR01177. This fam	99.54
PRK11705	383	cyclopropane fatty acyl phospholipid synthase; Pro	99.53
PRK13942	212	protein-L-isoaspartate O-methyltransferase; Provis	99.53
PRK10901	427	16S rRNA methyltransferase B; Provisional	99.51
smart00828	224	PKS_MT Methyltransferase in polyketide synthase (P	99.51
PF05401	201	NodS: Nodulation protein S (NodS); InterPro: IPR00	99.51
PRK14103	255	trans-aconitate 2-methyltransferase; Provisional	99.51
PRK07402	196	precorrin-6B methylase; Provisional	99.5
PF03848	192	TehB: Tellurite resistance protein TehB; InterPro:	99.5
PLN02781	234	Probable caffeoyl-CoA O-methyltransferase	99.5
PRK15068	322	tRNA mo(5)U34 methyltransferase; Provisional	99.5
PLN02336	475	phosphoethanolamine N-methyltransferase	99.5
COG2518	209	Pcm Protein-L-isoaspartate carboxylmethyltransfera	99.49
PRK14901	434	16S rRNA methyltransferase B; Provisional	99.49
PF05958	352	tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas	99.49
TIGR00452	314	methyltransferase, putative. Known examples to dat	99.49
PRK00811	283	spermidine synthase; Provisional	99.49
TIGR00095	189	RNA methyltransferase, RsmD family. This model rep	99.48
PRK01683	258	trans-aconitate 2-methyltransferase; Provisional	99.48
PRK04266	226	fibrillarin; Provisional	99.48
PRK06922	677	hypothetical protein; Provisional	99.47
KOG2904	328	consensus Predicted methyltransferase [General fun	99.47
PLN02490	340	MPBQ/MSBQ methyltransferase	99.46
TIGR00446	264	nop2p NOL1/NOP2/sun family putative RNA methylase.	99.46
PRK00312	212	pcm protein-L-isoaspartate O-methyltransferase; Re	99.46
PRK11188	209	rrmJ 23S rRNA methyltransferase J; Provisional	99.46
PF08003	315	Methyltransf_9: Protein of unknown function (DUF16	99.45
PLN02672	1082	methionine S-methyltransferase	99.44
KOG3191	209	consensus Predicted N6-DNA-methyltransferase [Tran	99.44
PF13649	101	Methyltransf_25: Methyltransferase domain; PDB: 3B	99.44
PF01135	209	PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl	99.44
TIGR02072	240	BioC biotin biosynthesis protein BioC. This enzyme	99.44
PRK14121	390	tRNA (guanine-N(7)-)-methyltransferase; Provisiona	99.43
PF08242	99	Methyltransf_12: Methyltransferase domain; InterPr	99.43
COG2519	256	GCD14 tRNA(1-methyladenosine) methyltransferase an	99.43
PLN02476	278	O-methyltransferase	99.43
COG4106	257	Tam Trans-aconitate methyltransferase [General fun	99.43
PRK14904	445	16S rRNA methyltransferase B; Provisional	99.43
PF03602	183	Cons_hypoth95: Conserved hypothetical protein 95;	99.43
TIGR03587	204	Pse_Me-ase pseudaminic acid biosynthesis-associate	99.42
PRK14902	444	16S rRNA methyltransferase B; Provisional	99.42
KOG1540	296	consensus Ubiquinone biosynthesis methyltransferas	99.42
PRK14903	431	16S rRNA methyltransferase B; Provisional	99.42
PRK00216	239	ubiE ubiquinone/menaquinone biosynthesis methyltra	99.41
COG2263	198	Predicted RNA methylase [Translation, ribosomal st	99.41
TIGR00563	426	rsmB ribosomal RNA small subunit methyltransferase	99.41
PHA03412	241	putative methyltransferase; Provisional	99.4
PRK04457	262	spermidine synthase; Provisional	99.4
TIGR00417	270	speE spermidine synthase. the SpeE subunit of sper	99.4
PLN02366	308	spermidine synthase	99.39
PF13489	161	Methyltransf_23: Methyltransferase domain; PDB: 3J	99.39
COG0742	187	N6-adenine-specific methylase [DNA replication, re	99.39
PF01596	205	Methyltransf_3: O-methyltransferase; InterPro: IPR	99.39
PF10294	173	Methyltransf_16: Putative methyltransferase; Inter	99.38
PF07021	193	MetW: Methionine biosynthesis protein MetW; InterP	99.38
TIGR03840	213	TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d	99.37
PHA03411	279	putative methyltransferase; Provisional	99.37
PLN03075	296	nicotianamine synthase; Provisional	99.37
PRK13943	322	protein-L-isoaspartate O-methyltransferase; Provis	99.37
COG4122	219	Predicted O-methyltransferase [General function pr	99.36
PRK08317	241	hypothetical protein; Provisional	99.35
TIGR00438	188	rrmJ cell division protein FtsJ.	99.35
TIGR02021	219	BchM-ChlM magnesium protoporphyrin O-methyltransfe	99.35
PRK05785	226	hypothetical protein; Provisional	99.34
PRK11088	272	rrmA 23S rRNA methyltransferase A; Provisional	99.34
smart00650	169	rADc Ribosomal RNA adenine dimethylases.	99.34
PRK04338	382	N(2),N(2)-dimethylguanosine tRNA methyltransferase	99.33
TIGR02716	306	C20_methyl_CrtF C-20 methyltransferase BchU. Membe	99.32
TIGR03438	301	probable methyltransferase. This model represents	99.32
KOG2187	534	consensus tRNA uracil-5-methyltransferase and rela	99.31
cd02440	107	AdoMet_MTases S-adenosylmethionine-dependent methy	99.3
PRK01581	374	speE spermidine synthase; Validated	99.3
smart00138	264	MeTrc Methyltransferase, chemotaxis proteins. Meth	99.3
PF01170	179	UPF0020: Putative RNA methylase family UPF0020; In	99.29
PRK13255	218	thiopurine S-methyltransferase; Reviewed	99.29
TIGR01934	223	MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis	99.29
TIGR00308	374	TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi	99.29
PF08704	247	GCD14: tRNA methyltransferase complex GCD14 subuni	99.28
PTZ00146	293	fibrillarin; Provisional	99.28
PLN02336	475	phosphoethanolamine N-methyltransferase	99.28
KOG4300	252	consensus Predicted methyltransferase [General fun	99.28
PRK03612	521	spermidine synthase; Provisional	99.28
PRK05134	233	bifunctional 3-demethylubiquinone-9 3-methyltransf	99.27
TIGR01983	224	UbiG ubiquinone biosynthesis O-methyltransferase.	99.27
PF05724	218	TPMT: Thiopurine S-methyltransferase (TPMT); Inter	99.26
PLN02589	247	caffeoyl-CoA O-methyltransferase	99.26
COG1041	347	Predicted DNA modification methylase [DNA replicat	99.25
PLN02585	315	magnesium protoporphyrin IX methyltransferase	99.25
COG2521	287	Predicted archaeal methyltransferase [General func	99.24
TIGR02081	194	metW methionine biosynthesis protein MetW. This pr	99.24
PRK06202	232	hypothetical protein; Provisional	99.23
PRK07580	230	Mg-protoporphyrin IX methyl transferase; Validated	99.23
PF03291	331	Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971	99.23
PLN02823	336	spermine synthase	99.22
PRK11727	321	23S rRNA mA1618 methyltransferase; Provisional	99.22
PF02390	195	Methyltransf_4: Putative methyltransferase ; Inter	99.2
PF02475	200	Met_10: Met-10+ like-protein; InterPro: IPR003402	99.2
PRK13256	226	thiopurine S-methyltransferase; Reviewed	99.19
KOG2899	288	consensus Predicted methyltransferase [General fun	99.14
COG2520	341	Predicted methyltransferase [General function pred	99.14
KOG1499	346	consensus Protein arginine N-methyltransferase PRM	99.13
PRK14896	258	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	99.13
PRK00274	272	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	99.11
KOG1975	389	consensus mRNA cap methyltransferase [RNA processi	99.09
PRK11933	470	yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF;	99.09
COG0116	381	Predicted N6-adenine-specific DNA methylase [DNA r	99.09
PTZ00338	294	dimethyladenosine transferase-like protein; Provis	99.09
KOG3420	185	consensus Predicted RNA methylase [Translation, ri	99.06
KOG1500	517	consensus Protein arginine N-methyltransferase CAR	99.06
TIGR00755	253	ksgA dimethyladenosine transferase. Alternate name	99.04
KOG1661	237	consensus Protein-L-isoaspartate(D-aspartate) O-me	99.03
PF05185	448	PRMT5: PRMT5 arginine-N-methyltransferase; InterPr	99.03
COG0220	227	Predicted S-adenosylmethionine-dependent methyltra	99.02
COG1352	268	CheR Methylase of chemotaxis methyl-accepting prot	99.01
PF01739	196	CheR: CheR methyltransferase, SAM binding domain;	98.98
PF01728	181	FtsJ: FtsJ-like methyltransferase; InterPro: IPR00	98.97
PF01564	246	Spermine_synth: Spermine/spermidine synthase; Inte	98.96
PRK00536	262	speE spermidine synthase; Provisional	98.95
KOG1541	270	consensus Predicted protein carboxyl methylase [Ge	98.95
PF09445	163	Methyltransf_15: RNA cap guanine-N2 methyltransfer	98.93
KOG2361	264	consensus Predicted methyltransferase [General fun	98.92
COG4976	287	Predicted methyltransferase (contains TPR repeat)	98.91
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	98.91
COG0144	355	Sun tRNA and rRNA cytosine-C5-methylases [Translat	98.9
COG0293	205	FtsJ 23S rRNA methylase [Translation, ribosomal st	98.9
KOG1663	237	consensus O-methyltransferase [Secondary metabolit	98.89
PF02384	311	N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T	98.86
PRK10611	287	chemotaxis methyltransferase CheR; Provisional	98.85
KOG3010	261	consensus Methyltransferase [General function pred	98.85
TIGR00478	228	tly hemolysin TlyA family protein. Hemolysins are	98.83
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	98.81
COG0421	282	SpeE Spermidine synthase [Amino acid transport and	98.81
COG0030	259	KsgA Dimethyladenosine transferase (rRNA methylati	98.76
PRK00050	296	16S rRNA m(4)C1402 methyltranserfase; Provisional	98.76
PF00891	241	Methyltransf_2: O-methyltransferase; InterPro: IPR	98.75
PF06080	204	DUF938: Protein of unknown function (DUF938); Inte	98.74
PF12147	311	Methyltransf_20: Putative methyltransferase; Inter	98.73
TIGR02987	524	met_A_Alw26 type II restriction m6 adenine DNA met	98.73
PRK04148	134	hypothetical protein; Provisional	98.72
COG4262	508	Predicted spermidine synthase with an N-terminal m	98.71
PF01189	283	Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR	98.71
PF02527	184	GidB: rRNA small subunit methyltransferase G; Inte	98.69
PF05219	265	DREV: DREV methyltransferase; InterPro: IPR007884	98.67
COG3963	194	Phospholipid N-methyltransferase [Lipid metabolism	98.65
PLN02232	160	ubiquinone biosynthesis methyltransferase	98.61
PF05971	299	Methyltransf_10: Protein of unknown function (DUF8	98.61
COG3897	218	Predicted methyltransferase [General function pred	98.6
COG1189	245	Predicted rRNA methylase [Translation, ribosomal s	98.59
PF02005	377	TRM: N2,N2-dimethylguanosine tRNA methyltransferas	98.58
PF05891	218	Methyltransf_PK: AdoMet dependent proline di-methy	98.58
KOG0820	315	consensus Ribosomal RNA adenine dimethylase [RNA p	98.58
COG1867	380	TRM1 N2,N2-dimethylguanosine tRNA methyltransferas	98.52
KOG2671	421	consensus Putative RNA methylase [Replication, rec	98.48
COG4076	252	Predicted RNA methylase [General function predicti	98.47
KOG2940	325	consensus Predicted methyltransferase [General fun	98.45
PF00398	262	RrnaAD: Ribosomal RNA adenine dimethylase; InterPr	98.45
COG0357	215	GidB Predicted S-adenosylmethionine-dependent meth	98.43
PF05148	219	Methyltransf_8: Hypothetical methyltransferase; In	98.43
PF04816	205	DUF633: Family of unknown function (DUF633) ; Inte	98.42
TIGR03439	319	methyl_EasF probable methyltransferase domain, Eas	98.41
KOG1122	460	consensus tRNA and rRNA cytosine-C5-methylase (nuc	98.37
PF08123	205	DOT1: Histone methylation protein DOT1 ; InterPro:	98.36
KOG4589	232	consensus Cell division protein FtsJ [Cell cycle c	98.31
KOG2915	314	consensus tRNA(1-methyladenosine) methyltransferas	98.3
PF01234	256	NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I	98.3
COG2384	226	Predicted SAM-dependent methyltransferase [General	98.25
TIGR00006	305	S-adenosyl-methyltransferase MraW. Genetics paper	98.24
KOG3045	325	consensus Predicted RNA methylase involved in rRNA	98.18
PF01269	229	Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr	98.16
PRK11760	357	putative 23S rRNA C2498 ribose 2'-O-ribose methylt	98.14
PF01861	243	DUF43: Protein of unknown function DUF43; InterPro	98.13
KOG2730	263	consensus Methylase [General function prediction o	98.13
PF13578	106	Methyltransf_24: Methyltransferase domain; PDB: 3S	98.11
PRK10742	250	putative methyltransferase; Provisional	98.04
TIGR01444	143	fkbM_fam methyltransferase, FkbM family. Members o	98.01
PF06962	140	rRNA_methylase: Putative rRNA methylase; InterPro:	98.01
PF03141	506	Methyltransf_29: Putative S-adenosyl-L-methionine-	98.0
PF03059	276	NAS: Nicotianamine synthase protein; InterPro: IPR	97.96
COG1889	231	NOP1 Fibrillarin-like rRNA methylase [Translation,	97.95
PF13679	141	Methyltransf_32: Methyltransferase domain	97.91
KOG3115	249	consensus Methyltransferase-like protein [General	97.86
COG3129	292	Predicted SAM-dependent methyltransferase [General	97.85
PF07942	270	N2227: N2227-like protein; InterPro: IPR012901 Thi	97.81
KOG1709	271	consensus Guanidinoacetate methyltransferase and r	97.8
COG0500	257	SmtA SAM-dependent methyltransferases [Secondary m	97.77
COG0275	314	Predicted S-adenosylmethionine-dependent methyltra	97.72
KOG4058	199	consensus Uncharacterized conserved protein [Funct	97.71
PF09243	274	Rsm22: Mitochondrial small ribosomal subunit Rsm22	97.71
PF04672	267	Methyltransf_19: S-adenosyl methyltransferase; Int	97.71
KOG3201	201	consensus Uncharacterized conserved protein [Funct	97.7
KOG3178	342	consensus Hydroxyindole-O-methyltransferase and re	97.69
COG0286	489	HsdM Type I restriction-modification system methyl	97.67
KOG1253	525	consensus tRNA methyltransferase [Translation, rib	97.66
KOG1269	364	consensus SAM-dependent methyltransferases [Lipid	97.6
PF11599	246	AviRa: RRNA methyltransferase AviRa; InterPro: IPR	97.59
KOG2198	375	consensus tRNA cytosine-5-methylases and related e	97.56
PF01795	310	Methyltransf_5: MraW methylase family; InterPro: I	97.52
PHA01634	156	hypothetical protein	97.4
PF01555	231	N6_N4_Mtase: DNA methylase; InterPro: IPR002941 Th	97.36
KOG1562	337	consensus Spermidine synthase [Amino acid transpor	97.33
KOG1227	351	consensus Putative methyltransferase [General func	97.32
PRK11524	284	putative methyltransferase; Provisional	97.3
KOG3987	288	consensus Uncharacterized conserved protein DREV/C	97.29
PF04989	206	CmcI: Cephalosporin hydroxylase; InterPro: IPR0070	97.28
KOG1501	636	consensus Arginine N-methyltransferase [General fu	97.28
PF11968	219	DUF3321: Putative methyltransferase (DUF3321); Int	97.25
KOG2793	248	consensus Putative N2,N2-dimethylguanosine tRNA me	97.21
PF07091	251	FmrO: Ribosomal RNA methyltransferase (FmrO); PDB:	97.21
cd00315	275	Cyt_C5_DNA_methylase Cytosine-C5 specific DNA meth	97.14
KOG1099	294	consensus SAM-dependent methyltransferase/cell div	97.1
PRK13699	227	putative methylase; Provisional	97.06
PF04445	234	SAM_MT: Putative SAM-dependent methyltransferase;	97.01
KOG2352	482	consensus Predicted spermine/spermidine synthase [	96.94
COG1568	354	Predicted methyltransferases [General function pre	96.91
KOG1331	293	consensus Predicted methyltransferase [General fun	96.89
COG1063	350	Tdh Threonine dehydrogenase and related Zn-depende	96.88
KOG0024	354	consensus Sorbitol dehydrogenase [Secondary metabo	96.79
KOG2798	369	consensus Putative trehalase [Carbohydrate transpo	96.76
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	96.75
COG4798	238	Predicted methyltransferase [General function pred	96.59
KOG1596	317	consensus Fibrillarin and related nucleolar RNA-bi	96.51
PF05711	248	TylF: Macrocin-O-methyltransferase (TylF); InterPr	96.37
PRK09880	343	L-idonate 5-dehydrogenase; Provisional	96.25
cd08237	341	ribitol-5-phosphate_DH ribitol-5-phosphate dehydro	96.23
PF03141	506	Methyltransf_29: Putative S-adenosyl-L-methionine-	96.17
KOG2352	482	consensus Predicted spermine/spermidine synthase [	95.85
KOG2078	495	consensus tRNA modification enzyme [RNA processing	95.72
PF10237	162	N6-adenineMlase: Probable N6-adenine methyltransfe	95.65
PF07757	112	AdoMet_MTase: Predicted AdoMet-dependent methyltra	95.64
cd08283	386	FDH_like_1 Glutathione-dependent formaldehyde dehy	95.57
PF00107	130	ADH_zinc_N: Zinc-binding dehydrogenase; InterPro:	95.56
TIGR01202	308	bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl	95.51
KOG2912	419	consensus Predicted DNA methylase [Function unknow	95.51
COG0270	328	Dcm Site-specific DNA methylase [DNA replication,	95.34
PF10354	166	DUF2431: Domain of unknown function (DUF2431); Int	95.32
KOG1201	300	consensus Hydroxysteroid 17-beta dehydrogenase 11	95.3
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	95.29
TIGR00675	315	dcm DNA-methyltransferase (dcm). All proteins in t	95.28
TIGR03451	358	mycoS_dep_FDH mycothiol-dependent formaldehyde deh	95.22
COG5459	484	Predicted rRNA methylase [Translation, ribosomal s	95.17
PRK11524	284	putative methyltransferase; Provisional	95.16
PF06859	110	Bin3: Bicoid-interacting protein 3 (Bin3); InterPr	95.08
PRK10458	467	DNA cytosine methylase; Provisional	94.87
KOG1098	780	consensus Putative SAM-dependent rRNA methyltransf	94.82
PF00145	335	DNA_methylase: C-5 cytosine-specific DNA methylase	94.8
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	94.79
TIGR02822	329	adh_fam_2 zinc-binding alcohol dehydrogenase famil	94.74
cd08281	371	liver_ADH_like1 Zinc-dependent alcohol dehydrogena	94.71
KOG2920	282	consensus Predicted methyltransferase [General fun	94.7
TIGR03366	280	HpnZ_proposed putative phosphonate catabolism asso	94.47
PF03269	177	DUF268: Caenorhabditis protein of unknown function	94.47
cd08230	355	glucose_DH Glucose dehydrogenase. Glucose dehydrog	94.24
KOG0821	326	consensus Predicted ribosomal RNA adenine dimethyl	94.17
TIGR00497	501	hsdM type I restriction system adenine methylase (	94.14
cd08239	339	THR_DH_like L-threonine dehydrogenase (TDH)-like.	94.02
PF07279	218	DUF1442: Protein of unknown function (DUF1442); In	93.96
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	93.73
cd08254	338	hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carbo	93.72
PRK10309	347	galactitol-1-phosphate dehydrogenase; Provisional	93.66
PRK13699	227	putative methylase; Provisional	93.57
PRK01747	662	mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans	93.42
PLN02740	381	Alcohol dehydrogenase-like	93.25
cd08285	351	NADP_ADH NADP(H)-dependent alcohol dehydrogenases.	92.95
COG4301	321	Uncharacterized conserved protein [Function unknow	92.83
KOG0822	649	consensus Protein kinase inhibitor [Cell cycle con	92.73
COG1565	370	Uncharacterized conserved protein [Function unknow	92.55
cd05188	271	MDR Medium chain reductase/dehydrogenase (MDR)/zin	92.5
cd08238	410	sorbose_phosphate_red L-sorbose-1-phosphate reduct	92.37
PF03686	127	UPF0146: Uncharacterised protein family (UPF0146);	92.3
KOG2651	476	consensus rRNA adenine N-6-methyltransferase [RNA	92.2
PRK15001	378	SAM-dependent 23S ribosomal RNA mG1835 methyltrans	92.17
PLN02827	378	Alcohol dehydrogenase-like	92.12
TIGR03201	349	dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-Co	91.98
COG0863	302	DNA modification methylase [DNA replication, recom	91.92
PF02153	258	PDH: Prephenate dehydrogenase; InterPro: IPR003099	91.64
PRK05708	305	2-dehydropantoate 2-reductase; Provisional	91.41
PF00106	167	adh_short: short chain dehydrogenase alcohol dehyd	91.41
COG1255	129	Uncharacterized protein conserved in archaea [Func	91.25
TIGR00561	511	pntA NAD(P) transhydrogenase, alpha subunit. In so	91.22
COG0287	279	TyrA Prephenate dehydrogenase [Amino acid transpor	91.17
cd05278	347	FDH_like Formaldehyde dehydrogenases. Formaldehyde	90.87
TIGR02819	393	fdhA_non_GSH formaldehyde dehydrogenase, glutathio	90.62
PLN03154	348	putative allyl alcohol dehydrogenase; Provisional	90.38
PRK07502	307	cyclohexadienyl dehydrogenase; Validated	90.34
COG2961	279	ComJ Protein involved in catabolism of external DN	90.3
PRK05786	238	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	89.91
cd08233	351	butanediol_DH_like (2R,3R)-2,3-butanediol dehydrog	89.82
PF02737	180	3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind	89.73
PF02636	252	Methyltransf_28: Putative S-adenosyl-L-methionine-	89.73
PRK07417	279	arogenate dehydrogenase; Reviewed	89.72
COG0604	326	Qor NADPH:quinone reductase and related Zn-depende	89.53
KOG3924	419	consensus Putative protein methyltransferase invol	89.36
TIGR00936	406	ahcY adenosylhomocysteinase. This enzyme hydrolyze	89.33
cd08300	368	alcohol_DH_class_III class III alcohol dehydrogena	89.19
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	89.12
cd08255	277	2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_	89.05
cd08242	319	MDR_like Medium chain dehydrogenases/reductase (MD	89.02
PF04378	245	RsmJ: Ribosomal RNA small subunit methyltransferas	88.57
PRK05808	282	3-hydroxybutyryl-CoA dehydrogenase; Validated	88.52
COG2933	358	Predicted SAM-dependent methyltransferase [General	88.34
KOG0022	375	consensus Alcohol dehydrogenase, class III [Second	88.28
PRK06522	304	2-dehydropantoate 2-reductase; Reviewed	88.1
COG1062	366	AdhC Zn-dependent alcohol dehydrogenases, class II	88.0
PRK03659	601	glutathione-regulated potassium-efflux system prot	87.86
KOG0725	270	consensus Reductases with broad range of substrate	87.76
TIGR02356	202	adenyl_thiF thiazole biosynthesis adenylyltransfer	87.68
COG1893	307	ApbA Ketopantoate reductase [Coenzyme metabolism]	87.68
PRK05476	425	S-adenosyl-L-homocysteine hydrolase; Provisional	87.49
PF03721	185	UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen	87.49
PRK03562	621	glutathione-regulated potassium-efflux system prot	87.4
PF02086	260	MethyltransfD12: D12 class N6 adenine-specific DNA	87.4
cd08294	329	leukotriene_B4_DH_like 13-PGR is a bifunctional en	87.39
PRK08339	263	short chain dehydrogenase; Provisional	87.16
PRK06701	290	short chain dehydrogenase; Provisional	87.01
cd08278	365	benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Be	86.95
COG3510	237	CmcI Cephalosporin hydroxylase [Defense mechanisms	86.66
TIGR02825	325	B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15	86.63
cd08261	337	Zn_ADH7 Alcohol dehydrogenases of the MDR family.	86.58
PRK05876	275	short chain dehydrogenase; Provisional	86.41
PRK06035	291	3-hydroxyacyl-CoA dehydrogenase; Validated	86.37
COG0677	436	WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenas	86.33
PRK06124	256	gluconate 5-dehydrogenase; Provisional	86.32
PRK07814	263	short chain dehydrogenase; Provisional	86.26
PRK07109	334	short chain dehydrogenase; Provisional	86.03
cd08295	338	double_bond_reductase_like Arabidopsis alkenal dou	85.95
PLN02494	477	adenosylhomocysteinase	85.94
PRK07063	260	short chain dehydrogenase; Provisional	85.92
PTZ00357	1072	methyltransferase; Provisional	85.89
PRK07904	253	short chain dehydrogenase; Provisional	85.88
PRK06249	313	2-dehydropantoate 2-reductase; Provisional	85.69
PF07669	106	Eco57I: Eco57I restriction-modification methylase;	85.61
PRK07576	264	short chain dehydrogenase; Provisional	85.52
cd05285	343	sorbitol_DH Sorbitol dehydrogenase. Sorbitol and a	85.48
PF02558	151	ApbA: Ketopantoate reductase PanE/ApbA; InterPro:	85.44
PRK07097	265	gluconate 5-dehydrogenase; Provisional	85.2
PRK08324	681	short chain dehydrogenase; Validated	85.17
PRK07533	258	enoyl-(acyl carrier protein) reductase; Provisiona	84.68
cd08293	345	PTGR2 Prostaglandin reductase. Prostaglandins and	84.65
PRK10669	558	putative cation:proton antiport protein; Provision	84.63
cd08265	384	Zn_ADH3 Alcohol dehydrogenases of the MDR family.	84.48
TIGR00027	260	mthyl_TIGR00027 methyltransferase, putative, TIGR0	84.41
PRK09242	257	tropinone reductase; Provisional	84.31
PRK06194	287	hypothetical protein; Provisional	84.3
cd08232	339	idonate-5-DH L-idonate 5-dehydrogenase. L-idonate	84.28
PF05430	124	Methyltransf_30: S-adenosyl-L-methionine-dependent	84.11
PRK06139	330	short chain dehydrogenase; Provisional	84.09
PF11312	315	DUF3115: Protein of unknown function (DUF3115); In	84.03
PLN02586	360	probable cinnamyl alcohol dehydrogenase	83.97
PRK12937	245	short chain dehydrogenase; Provisional	83.95
cd08231	361	MDR_TM0436_like Hypothetical enzyme TM0436 resembl	83.93
PF01555	231	N6_N4_Mtase: DNA methylase; InterPro: IPR002941 Th	83.91
PRK12491	272	pyrroline-5-carboxylate reductase; Reviewed	83.9
PRK06128	300	oxidoreductase; Provisional	83.12
cd08298	329	CAD2 Cinnamyl alcohol dehydrogenases (CAD). These	82.93
PRK05867	253	short chain dehydrogenase; Provisional	82.92
cd05213	311	NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain	82.72
PRK08507	275	prephenate dehydrogenase; Validated	82.66
cd08286	345	FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-lik	82.6
PRK12475	338	thiamine/molybdopterin biosynthesis MoeB-like prot	82.53
COG0300	265	DltE Short-chain dehydrogenases of various substra	82.42
cd08291	324	ETR_like_1 2-enoyl thioester reductase (ETR) like	82.4
PF11899	380	DUF3419: Protein of unknown function (DUF3419); In	82.26
PRK07523	255	gluconate 5-dehydrogenase; Provisional	82.17
PRK05854	313	short chain dehydrogenase; Provisional	82.14
TIGR00692	340	tdh L-threonine 3-dehydrogenase. E. coli His-90 mo	82.11
PRK05872	296	short chain dehydrogenase; Provisional	82.07
PRK12939	250	short chain dehydrogenase; Provisional	82.07
PRK08085	254	gluconate 5-dehydrogenase; Provisional	82.02
PRK07688	339	thiamine/molybdopterin biosynthesis ThiF/MoeB-like	81.99
PRK09072	263	short chain dehydrogenase; Provisional	81.76
PRK07035	252	short chain dehydrogenase; Provisional	81.58
PRK08265	261	short chain dehydrogenase; Provisional	81.48
PRK07791	286	short chain dehydrogenase; Provisional	81.47
PRK08862	227	short chain dehydrogenase; Provisional	81.45
cd05284	340	arabinose_DH_like D-arabinose dehydrogenase. This	81.42
cd08296	333	CAD_like Cinnamyl alcohol dehydrogenases (CAD). Ci	81.4
PRK07478	254	short chain dehydrogenase; Provisional	81.39
PRK08229	341	2-dehydropantoate 2-reductase; Provisional	81.12
PRK12743	256	oxidoreductase; Provisional	81.05
PRK06172	253	short chain dehydrogenase; Provisional	80.97
PF05050	167	Methyltransf_21: Methyltransferase FkbM domain; In	80.97
PRK05597	355	molybdopterin biosynthesis protein MoeB; Validated	80.92
cd08279	363	Zn_ADH_class_III Class III alcohol dehydrogenase.	80.88
PRK07066	321	3-hydroxybutyryl-CoA dehydrogenase; Validated	80.73
PRK05866	293	short chain dehydrogenase; Provisional	80.65
PRK12921	305	2-dehydropantoate 2-reductase; Provisional	80.63
cd08234	334	threonine_DH_like L-threonine dehydrogenase. L-thr	80.57
cd05279	365	Zn_ADH1 Liver alcohol dehydrogenase and related zi	80.5
PRK06500	249	short chain dehydrogenase; Provisional	80.38
PRK08306	296	dipicolinate synthase subunit A; Reviewed	80.31
PRK08217	253	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	80.28
COG4627	185	Uncharacterized protein conserved in bacteria [Fun	80.24
PRK05396	341	tdh L-threonine 3-dehydrogenase; Validated	80.24
PRK08818	370	prephenate dehydrogenase; Provisional	80.23
PRK07677	252	short chain dehydrogenase; Provisional	80.22
PF03514	374	GRAS: GRAS domain family; InterPro: IPR005202 Sequ	80.08
cd01065	155	NAD_bind_Shikimate_DH NAD(P) binding domain of Shi	80.03

>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=8.7e-40  Score=275.58  Aligned_cols=205  Identities=40%  Similarity=0.689  Sum_probs=184.5

Q ss_pred             cchhhHHHhhhcCccEEEcCceEEecCCCCCCCC-CceeEEeCcccccCCCCchhHHHHHHHHHhhccCCCeEEEEcCcc
Q 026513            3 EQCNWIKKTQQSFHPVEVTKGLWIVPEWGAPPDV-QATNIILNPGLAFGSGEHATTKLCLLLLRRLIKGGELFLDYGTGS   81 (237)
Q Consensus         3 ~~~~w~~~w~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~f~~g~~~~~~~~~~~l~~~~~~~~~vLDlG~G~   81 (237)
                      .+.||.+.|+++++|++++.++++.|+|+..+.. +...++++||+.||+|+|++|.+|++++..+..+|.+|||+||||
T Consensus        94 ~e~DW~~~wk~~~~P~rig~~f~I~Psw~~~~~~~~~~~i~lDPGlAFGTG~HpTT~lcL~~Le~~~~~g~~vlDvGcGS  173 (300)
T COG2264          94 DEEDWEREWKKYFHPVRIGERFVIVPSWREYPEPSDELNIELDPGLAFGTGTHPTTSLCLEALEKLLKKGKTVLDVGCGS  173 (300)
T ss_pred             ChHHHHHHHHhcCCcEEeeeeEEECCCCccCCCCCCceEEEEccccccCCCCChhHHHHHHHHHHhhcCCCEEEEecCCh
Confidence            4789999999999999999999999999997777 789999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccccccccccCCCCCCc
Q 026513           82 GILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDLSSHKIRGISQTEK  161 (237)
Q Consensus        82 G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (237)
                      |.+++++++.|+.+++|+|++|.+++.|++|++.|++..   .+.....+..                     .....++
T Consensus       174 GILaIAa~kLGA~~v~g~DiDp~AV~aa~eNa~~N~v~~---~~~~~~~~~~---------------------~~~~~~~  229 (300)
T COG2264         174 GILAIAAAKLGAKKVVGVDIDPQAVEAARENARLNGVEL---LVQAKGFLLL---------------------EVPENGP  229 (300)
T ss_pred             hHHHHHHHHcCCceEEEecCCHHHHHHHHHHHHHcCCch---hhhcccccch---------------------hhcccCc
Confidence            999999999999999999999999999999999999874   1211122211                     2222469


Q ss_pred             eeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEeccCCCCHHHHHHHHhh-ccccceeeecCCEEEEEEEEc
Q 026513          162 YDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILSEQLPHIINRYSE-FLEDILVSEMDDWTCVSGKKK  231 (237)
Q Consensus       162 fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~~~~~~~~~~~~~~~~-~~~~~~~~~~~~w~~~~~~~~  231 (237)
                      ||+|++|...+.+..+...+.+.++|||++++|+++.++...+...+.. .|..++....++|.++.++|+
T Consensus       230 ~DvIVANILA~vl~~La~~~~~~lkpgg~lIlSGIl~~q~~~V~~a~~~~gf~v~~~~~~~eW~~i~~kr~  300 (300)
T COG2264         230 FDVIVANILAEVLVELAPDIKRLLKPGGRLILSGILEDQAESVAEAYEQAGFEVVEVLEREEWVAIVGKRK  300 (300)
T ss_pred             ccEEEehhhHHHHHHHHHHHHHHcCCCceEEEEeehHhHHHHHHHHHHhCCCeEeEEEecCCEEEEEEEcC
Confidence            9999999988999999999999999999999999999999999999955 599999999999999999874

>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences

Probab=100.00  E-value=5.7e-40  Score=279.09  Aligned_cols=201  Identities=41%  Similarity=0.677  Sum_probs=172.7

Q ss_pred             cchhhHHHhhhcCccEEEcCceEEecCCCCCCC-CCceeEEeCcccccCCCCchhHHHHHHHHHhhccCCCeEEEEcCcc
Q 026513            3 EQCNWIKKTQQSFHPVEVTKGLWIVPEWGAPPD-VQATNIILNPGLAFGSGEHATTKLCLLLLRRLIKGGELFLDYGTGS   81 (237)
Q Consensus         3 ~~~~w~~~w~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~f~~g~~~~~~~~~~~l~~~~~~~~~vLDlG~G~   81 (237)
                      +++||.+.|+++|+|+.+++++++.|+|...+. .+...+.++|+|.||+|.|++|++|++++.....+|++|||+||||
T Consensus        93 ~~~dW~~~Wk~~~~P~~vg~~~~I~P~w~~~~~~~~~~~I~idPg~AFGTG~H~TT~lcl~~l~~~~~~g~~vLDvG~GS  172 (295)
T PF06325_consen   93 EEEDWEEAWKKYFKPIRVGDRLVIVPSWEEYPEPPDEIVIEIDPGMAFGTGHHPTTRLCLELLEKYVKPGKRVLDVGCGS  172 (295)
T ss_dssp             -HHCHHHHHHHH---EEECTTEEEEETT----SSTTSEEEEESTTSSS-SSHCHHHHHHHHHHHHHSSTTSEEEEES-TT
T ss_pred             ccccchHHHHhcCccEEECCcEEEECCCcccCCCCCcEEEEECCCCcccCCCCHHHHHHHHHHHHhccCCCEEEEeCCcH
Confidence            578999999999999999999999999999765 6778999999999999999999999999999989999999999999


Q ss_pred             hHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEecc-CccccccccccccccccccccccccCCCCCC
Q 026513           82 GILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVP-DRTFTASMNERVDGVVEDLSSHKIRGISQTE  160 (237)
Q Consensus        82 G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (237)
                      |.+++.+++.|+.+|+|+|++|.+++.|++|+..|++..   ++.+.. .|.                         ..+
T Consensus       173 GILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~N~~~~---~~~v~~~~~~-------------------------~~~  224 (295)
T PF06325_consen  173 GILAIAAAKLGAKKVVAIDIDPLAVEAARENAELNGVED---RIEVSLSEDL-------------------------VEG  224 (295)
T ss_dssp             SHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHHTT-TT---CEEESCTSCT-------------------------CCS
T ss_pred             HHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHHcCCCe---eEEEEEeccc-------------------------ccc
Confidence            999999999999999999999999999999999999986   343321 111                         147


Q ss_pred             ceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEeccCCCCHHHHHHHHhhccccceeeecCCEEEEEEEEc
Q 026513          161 KYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILSEQLPHIINRYSEFLEDILVSEMDDWTCVSGKKK  231 (237)
Q Consensus       161 ~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~  231 (237)
                      +||+|++|...+.+..++..+.++|+|||++++|+++.++..++...+.+.|..++....++|.++.++|+
T Consensus       225 ~~dlvvANI~~~vL~~l~~~~~~~l~~~G~lIlSGIl~~~~~~v~~a~~~g~~~~~~~~~~~W~~l~~~Kk  295 (295)
T PF06325_consen  225 KFDLVVANILADVLLELAPDIASLLKPGGYLILSGILEEQEDEVIEAYKQGFELVEEREEGEWVALVFKKK  295 (295)
T ss_dssp             -EEEEEEES-HHHHHHHHHHCHHHEEEEEEEEEEEEEGGGHHHHHHHHHTTEEEEEEEEETTEEEEEEEE-
T ss_pred             cCCEEEECCCHHHHHHHHHHHHHhhCCCCEEEEccccHHHHHHHHHHHHCCCEEEEEEEECCEEEEEEEeC
Confidence            99999999999999999999999999999999999999999999999987899999999999999999985

Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....

>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed

Probab=100.00  E-value=1.1e-32  Score=231.58  Aligned_cols=198  Identities=45%  Similarity=0.766  Sum_probs=176.5

Q ss_pred             cchhhHHHhhhcCccEEEcCceEEecCCCCCCCCCceeEEeCcccccCCCCchhHHHHHHHHHhhccCCCeEEEEcCcch
Q 026513            3 EQCNWIKKTQQSFHPVEVTKGLWIVPEWGAPPDVQATNIILNPGLAFGSGEHATTKLCLLLLRRLIKGGELFLDYGTGSG   82 (237)
Q Consensus         3 ~~~~w~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~g~~~~~~~~~~~l~~~~~~~~~vLDlG~G~G   82 (237)
                      ++.||.+.|+++++|+..+.++++.|+|...+......+.++|++.||+|.|+++..++..+.....++.+|||+|||+|
T Consensus        52 ~~~dw~~~w~~~~~p~~~g~~~~i~p~~~~~~~~~~~~i~i~p~~afgtg~h~tt~~~l~~l~~~~~~~~~VLDiGcGsG  131 (250)
T PRK00517         52 EDEDWEREWKKYFHPIRIGDRLWIVPSWEDPPDPDEINIELDPGMAFGTGTHPTTRLCLEALEKLVLPGKTVLDVGCGSG  131 (250)
T ss_pred             CchhHHHHHHHHCCCEEEcCCEEEECCCcCCCCCCeEEEEECCCCccCCCCCHHHHHHHHHHHhhcCCCCEEEEeCCcHH
Confidence            57899999999999999999999999999876577888999999999999999999999999887788999999999999


Q ss_pred             HHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccccccccccCCCCCCce
Q 026513           83 ILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDLSSHKIRGISQTEKY  162 (237)
Q Consensus        83 ~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f  162 (237)
                      .+++.+++.|..+|+|+|+|+.+++.|++|+..+++..   .+.+..+                            +.+|
T Consensus       132 ~l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~~~~~~---~~~~~~~----------------------------~~~f  180 (250)
T PRK00517        132 ILAIAAAKLGAKKVLAVDIDPQAVEAARENAELNGVEL---NVYLPQG----------------------------DLKA  180 (250)
T ss_pred             HHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCc---eEEEccC----------------------------CCCc
Confidence            99998888887789999999999999999999888642   2332222                            2279


Q ss_pred             eEEEEeCChHHHHHHHHHHhHhcCCCeEEEEeccCCCCHHHHHHHHhhc-cccceeeecCCEEEEEEEEc
Q 026513          163 DVVIANILLNPLLQLADHIVSYAKPGAVVGISGILSEQLPHIINRYSEF-LEDILVSEMDDWTCVSGKKK  231 (237)
Q Consensus       163 D~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~~~~~~~~~~~~~~~~~-~~~~~~~~~~~w~~~~~~~~  231 (237)
                      |+|++|...+.+..++..+.++|+|||+++++++..++..++...+... |..+.....++|.++.++|+
T Consensus       181 D~Vvani~~~~~~~l~~~~~~~LkpgG~lilsgi~~~~~~~v~~~l~~~Gf~~~~~~~~~~W~~~~~~~~  250 (250)
T PRK00517        181 DVIVANILANPLLELAPDLARLLKPGGRLILSGILEEQADEVLEAYEEAGFTLDEVLERGEWVALVGKKK  250 (250)
T ss_pred             CEEEEcCcHHHHHHHHHHHHHhcCCCcEEEEEECcHhhHHHHHHHHHHCCCEEEEEEEeCCEEEEEEEeC
Confidence            9999999888888899999999999999999999998899999988876 88899999999999999874

>TIGR00406 prmA ribosomal protein L11 methyltransferase

Probab=100.00  E-value=6e-33  Score=237.50  Aligned_cols=197  Identities=39%  Similarity=0.634  Sum_probs=173.7

Q ss_pred             cchhhHHHhhhcCccEEEcCceEEecCCCCCC-CCCceeEEeCcccccCCCCchhHHHHHHHHHhhccCCCeEEEEcCcc
Q 026513            3 EQCNWIKKTQQSFHPVEVTKGLWIVPEWGAPP-DVQATNIILNPGLAFGSGEHATTKLCLLLLRRLIKGGELFLDYGTGS   81 (237)
Q Consensus         3 ~~~~w~~~w~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~f~~g~~~~~~~~~~~l~~~~~~~~~vLDlG~G~   81 (237)
                      +++||.+.|+++|+|+.++.+++++|+|...+ ..+...+.++|++.||+|.|+++++++..+.....++.+|||+|||+
T Consensus        91 ~~~dW~~~w~~~~~p~~~g~~~~i~p~w~~~~~~~~~~~i~ldpg~aFgtG~h~tt~l~l~~l~~~~~~g~~VLDvGcGs  170 (288)
T TIGR00406        91 FSKDWERAWKDNFHPVQFGKRFWICPSWRDVPSDEDALIIMLDPGLAFGTGTHPTTSLCLEWLEDLDLKDKNVIDVGCGS  170 (288)
T ss_pred             chhhHHHHHHHhCCCEEEcCeEEEECCCcCCCCCCCcEEEEECCCCcccCCCCHHHHHHHHHHHhhcCCCCEEEEeCCCh
Confidence            36899999999999999999999999998854 46778999999999999999999999999988777899999999999


Q ss_pred             hHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccccccccccCCCCCCc
Q 026513           82 GILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDLSSHKIRGISQTEK  161 (237)
Q Consensus        82 G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (237)
                      |.+++.+++.|..+|+|+|+|+.+++.|++|+..+++..   ++.+...+..                     . ...++
T Consensus       171 G~lai~aa~~g~~~V~avDid~~al~~a~~n~~~n~~~~---~~~~~~~~~~---------------------~-~~~~~  225 (288)
T TIGR00406       171 GILSIAALKLGAAKVVGIDIDPLAVESARKNAELNQVSD---RLQVKLIYLE---------------------Q-PIEGK  225 (288)
T ss_pred             hHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCc---ceEEEecccc---------------------c-ccCCC
Confidence            999999988888899999999999999999999988764   3444444421                     1 12468


Q ss_pred             eeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEeccCCCCHHHHHHHHhhccccceeeecCCEE
Q 026513          162 YDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILSEQLPHIINRYSEFLEDILVSEMDDWT  224 (237)
Q Consensus       162 fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~  224 (237)
                      ||+|++|...+.+..++..+.+.|+|||+++++++...+..++...+.+.|..+++.+.++|.
T Consensus       226 fDlVvan~~~~~l~~ll~~~~~~LkpgG~li~sgi~~~~~~~v~~~~~~~f~~~~~~~~~~W~  288 (288)
T TIGR00406       226 ADVIVANILAEVIKELYPQFSRLVKPGGWLILSGILETQAQSVCDAYEQGFTVVEIRQREEWC  288 (288)
T ss_pred             ceEEEEecCHHHHHHHHHHHHHHcCCCcEEEEEeCcHhHHHHHHHHHHccCceeeEeccCCCC
Confidence            999999998888888999999999999999999999999999999998778888888899984

Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.

>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases

Probab=99.83  E-value=7.7e-19  Score=139.26  Aligned_cols=157  Identities=25%  Similarity=0.364  Sum_probs=115.0

Q ss_pred             eeEEeCcccccCCCCchhHHHHHHHHHhhccCCCeEEEEcCcchHHHHHHHHhC-CCeEEEEeCCHHHHHHHHHHHHHcC
Q 026513           39 TNIILNPGLAFGSGEHATTKLCLLLLRRLIKGGELFLDYGTGSGILGIAAIKFG-AAMSVGADIDPQAIKSAHQNAALNN  117 (237)
Q Consensus        39 ~~~~~~~~~~f~~g~~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~la~~~-~~~v~~vD~s~~~i~~a~~~~~~~~  117 (237)
                      .++...||++-.....+.+.++++.+...  ++.+|||+|||+|.+++.+++.+ ..+|+++|+++.+++.+++|+..++
T Consensus         2 ~~~~~~~gvFs~~~~d~~t~lL~~~l~~~--~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~   79 (170)
T PF05175_consen    2 LEFITHPGVFSPPRLDAGTRLLLDNLPKH--KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNG   79 (170)
T ss_dssp             EEEEEETTSTTTTSHHHHHHHHHHHHHHH--TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTT
T ss_pred             EEEEECCCeeCCCCCCHHHHHHHHHHhhc--cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcC
Confidence            46778888775555567788888888754  67799999999999999999864 4479999999999999999999999


Q ss_pred             CCCCcceEEeccCccccccccccccccccccccccccCCCCCCceeEEEEeCChH--------HHHHHHHHHhHhcCCCe
Q 026513          118 IGPKKMKLHLVPDRTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLN--------PLLQLADHIVSYAKPGA  189 (237)
Q Consensus       118 ~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~~--------~~~~~l~~~~~~L~~gG  189 (237)
                      +.+    +.++..|.++                     ..+..+||+|++|||++        ...+++..+.++|+|||
T Consensus        80 ~~~----v~~~~~d~~~---------------------~~~~~~fD~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~G  134 (170)
T PF05175_consen   80 LEN----VEVVQSDLFE---------------------ALPDGKFDLIVSNPPFHAGGDDGLDLLRDFIEQARRYLKPGG  134 (170)
T ss_dssp             CTT----EEEEESSTTT---------------------TCCTTCEEEEEE---SBTTSHCHHHHHHHHHHHHHHHEEEEE
T ss_pred             ccc----cccccccccc---------------------cccccceeEEEEccchhcccccchhhHHHHHHHHHHhccCCC
Confidence            875    7788888763                     22257999999999962        45688999999999999


Q ss_pred             EEEEeccCCCCHHHHHHHHhhccccceee-ecCCEEE
Q 026513          190 VVGISGILSEQLPHIINRYSEFLEDILVS-EMDDWTC  225 (237)
Q Consensus       190 ~liis~~~~~~~~~~~~~~~~~~~~~~~~-~~~~w~~  225 (237)
                      .+++..........+   +...|..+++. ..+++..
T Consensus       135 ~l~lv~~~~~~~~~~---l~~~f~~~~~~~~~~~~~v  168 (170)
T PF05175_consen  135 RLFLVINSHLGYERL---LKELFGDVEVVAKNKGFRV  168 (170)
T ss_dssp             EEEEEEETTSCHHHH---HHHHHS--EEEEEESSEEE
T ss_pred             EEEEEeecCCChHHH---HHHhcCCEEEEEECCCEEE
Confidence            998754333333333   44444455443 3444543

; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....

>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional

Probab=99.77  E-value=3.3e-17  Score=143.10  Aligned_cols=166  Identities=17%  Similarity=0.222  Sum_probs=126.1

Q ss_pred             ceeEEeCcccccCCCCchhHHHHHHHHHhhccCCCeEEEEcCcchHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHHc
Q 026513           38 ATNIILNPGLAFGSGEHATTKLCLLLLRRLIKGGELFLDYGTGSGILGIAAIKF-GAAMSVGADIDPQAIKSAHQNAALN  116 (237)
Q Consensus        38 ~~~~~~~~~~~f~~g~~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~la~~-~~~~v~~vD~s~~~i~~a~~~~~~~  116 (237)
                      ...+...|+.++..+....+.+++..+...  ...+|||+|||+|.+++.+++. +..+++++|+|+.+++.|++++..+
T Consensus       166 ~l~i~~~pgvFs~~~lD~gt~lLl~~l~~~--~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n  243 (342)
T PRK09489        166 GLTVKTLPGVFSRDGLDVGSQLLLSTLTPH--TKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAAN  243 (342)
T ss_pred             CEEEEeCCCCCCCCCCCHHHHHHHHhcccc--CCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc
Confidence            467888999999988888989888877532  2348999999999999999876 5568999999999999999999998


Q ss_pred             CCCCCcceEEeccCccccccccccccccccccccccccCCCCCCceeEEEEeCChHH--------HHHHHHHHhHhcCCC
Q 026513          117 NIGPKKMKLHLVPDRTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLNP--------LLQLADHIVSYAKPG  188 (237)
Q Consensus       117 ~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~~~--------~~~~l~~~~~~L~~g  188 (237)
                      ++.     ..++..|..+                    .  ..++||+|++|||+|.        ..+++..+.+.|+||
T Consensus       244 ~l~-----~~~~~~D~~~--------------------~--~~~~fDlIvsNPPFH~g~~~~~~~~~~~i~~a~~~Lkpg  296 (342)
T PRK09489        244 GLE-----GEVFASNVFS--------------------D--IKGRFDMIISNPPFHDGIQTSLDAAQTLIRGAVRHLNSG  296 (342)
T ss_pred             CCC-----CEEEEccccc--------------------c--cCCCccEEEECCCccCCccccHHHHHHHHHHHHHhcCcC
Confidence            865     3455666542                    1  1468999999999864        357899999999999


Q ss_pred             eEEEEeccCCCCHHHHHHHHhhcccccee-eecCCEEEEEEEEccccc
Q 026513          189 AVVGISGILSEQLPHIINRYSEFLEDILV-SEMDDWTCVSGKKKRVKE  235 (237)
Q Consensus       189 G~liis~~~~~~~~~~~~~~~~~~~~~~~-~~~~~w~~~~~~~~~~~~  235 (237)
                      |.+++.....-.-+.+++.   .|...++ .+.+.+..+.++|.|+..
T Consensus       297 G~L~iVan~~l~y~~~l~~---~Fg~~~~la~~~~f~v~~a~~~~~~~  341 (342)
T PRK09489        297 GELRIVANAFLPYPDLLDE---TFGSHEVLAQTGRFKVYRAIMTRQAK  341 (342)
T ss_pred             CEEEEEEeCCCChHHHHHH---HcCCeEEEEeCCCEEEEEEEccCcCC
Confidence            9999865432222333332   2333333 467889999999887754

>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]

Probab=99.76  E-value=4.5e-17  Score=137.30  Aligned_cols=164  Identities=21%  Similarity=0.266  Sum_probs=126.8

Q ss_pred             CCceeEEeCcccccCCCCchhHHHHHHHHHhhccCCCeEEEEcCcchHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHH
Q 026513           36 VQATNIILNPGLAFGSGEHATTKLCLLLLRRLIKGGELFLDYGTGSGILGIAAIKF-GAAMSVGADIDPQAIKSAHQNAA  114 (237)
Q Consensus        36 ~~~~~~~~~~~~~f~~g~~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~la~~-~~~~v~~vD~s~~~i~~a~~~~~  114 (237)
                      .....|.-.||++-.......++++++.+...  .+.+|||+|||.|.+++.+++. +..+++.+|+|..+++.|++|+.
T Consensus       126 ~~~~~~~t~pGVFS~~~lD~GS~lLl~~l~~~--~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~  203 (300)
T COG2813         126 GHELTFKTLPGVFSRDKLDKGSRLLLETLPPD--LGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLA  203 (300)
T ss_pred             cCceEEEeCCCCCcCCCcChHHHHHHHhCCcc--CCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHH
Confidence            45677888999888888888888888887543  2338999999999999999976 67899999999999999999999


Q ss_pred             HcCCCCCcceEEeccCccccccccccccccccccccccccCCCCCCceeEEEEeCChHH--------HHHHHHHHhHhcC
Q 026513          115 LNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLNP--------LLQLADHIVSYAK  186 (237)
Q Consensus       115 ~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~~~--------~~~~l~~~~~~L~  186 (237)
                      .|++.+    ..+...|.++                    ..  .++||+|+||||+|-        ..+++....+.|+
T Consensus       204 ~N~~~~----~~v~~s~~~~--------------------~v--~~kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~  257 (300)
T COG2813         204 ANGVEN----TEVWASNLYE--------------------PV--EGKFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLK  257 (300)
T ss_pred             HcCCCc----cEEEEecccc--------------------cc--cccccEEEeCCCccCCcchhHHHHHHHHHHHHHhhc
Confidence            999886    3566677653                    22  349999999999743        2378999999999


Q ss_pred             CCeEEEEeccCCCCHHHHHHHHhhcccccee-eecCCEEEEEEEE
Q 026513          187 PGAVVGISGILSEQLPHIINRYSEFLEDILV-SEMDDWTCVSGKK  230 (237)
Q Consensus       187 ~gG~liis~~~~~~~~~~~~~~~~~~~~~~~-~~~~~w~~~~~~~  230 (237)
                      +||.|.|-..   ........+++.|..+++ ...+++..+..+|
T Consensus       258 ~gGeL~iVan---~~l~y~~~L~~~Fg~v~~la~~~gf~Vl~a~k  299 (300)
T COG2813         258 PGGELWIVAN---RHLPYEKKLKELFGNVEVLAKNGGFKVLRAKK  299 (300)
T ss_pred             cCCEEEEEEc---CCCChHHHHHHhcCCEEEEEeCCCEEEEEEec
Confidence            9999999654   334445555666665554 4566677776655

>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A

Probab=99.75  E-value=3.1e-17  Score=120.62  Aligned_cols=102  Identities=30%  Similarity=0.456  Sum_probs=83.9

Q ss_pred             CCCeEEEEcCcchHHHHHHHH-hCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcc-ccccccccccccccc
Q 026513           70 GGELFLDYGTGSGILGIAAIK-FGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRT-FTASMNERVDGVVED  147 (237)
Q Consensus        70 ~~~~vLDlG~G~G~~~~~la~-~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~-~~~~~~~~~~~~~~~  147 (237)
                      |+.+|||+|||+|.+++.+++ .+..+++|+|+|+.+++.|++++...+...   ++.++++|+ .              
T Consensus         1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~---~i~~~~~d~~~--------------   63 (112)
T PF12847_consen    1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSD---RITFVQGDAEF--------------   63 (112)
T ss_dssp             TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTT---TEEEEESCCHG--------------
T ss_pred             CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCC---CeEEEECcccc--------------
Confidence            578999999999999999998 578889999999999999999996666554   588999998 2              


Q ss_pred             cccccccCCCCCCceeEEEEeC-Ch----H--HHHHHHHHHhHhcCCCeEEEEec
Q 026513          148 LSSHKIRGISQTEKYDVVIANI-LL----N--PLLQLADHIVSYAKPGAVVGISG  195 (237)
Q Consensus       148 ~~~~~~~~~~~~~~fD~I~~n~-~~----~--~~~~~l~~~~~~L~~gG~liis~  195 (237)
                             ......+||+|+++. ..    +  ...++++.+.+.|+|||+++++.
T Consensus        64 -------~~~~~~~~D~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~  111 (112)
T PF12847_consen   64 -------DPDFLEPFDLVICSGFTLHFLLPLDERRRVLERIRRLLKPGGRLVINT  111 (112)
T ss_dssp             -------GTTTSSCEEEEEECSGSGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             -------CcccCCCCCEEEECCCccccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence                   122246799999988 32    2  23567999999999999999863

...

>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]

Probab=99.73  E-value=1.5e-17  Score=135.47  Aligned_cols=114  Identities=22%  Similarity=0.270  Sum_probs=93.0

Q ss_pred             CCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccccc
Q 026513           70 GGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDLS  149 (237)
Q Consensus        70 ~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~  149 (237)
                      +|++|||+|||.|.++..+|+.| .+|+|+|+++.+|+.|+..+..+++.     +.+.+....+               
T Consensus        59 ~g~~vLDvGCGgG~Lse~mAr~G-a~VtgiD~se~~I~~Ak~ha~e~gv~-----i~y~~~~~ed---------------  117 (243)
T COG2227          59 PGLRVLDVGCGGGILSEPLARLG-ASVTGIDASEKPIEVAKLHALESGVN-----IDYRQATVED---------------  117 (243)
T ss_pred             CCCeEEEecCCccHhhHHHHHCC-CeeEEecCChHHHHHHHHhhhhcccc-----ccchhhhHHH---------------
Confidence            78999999999999999999998 66999999999999999999998876     4455555431               


Q ss_pred             cccccCCCCCCceeEEEEeCChHHH---HHHHHHHhHhcCCCeEEEEeccCCCCHHHHHHHHh
Q 026513          150 SHKIRGISQTEKYDVVIANILLNPL---LQLADHIVSYAKPGAVVGISGILSEQLPHIINRYS  209 (237)
Q Consensus       150 ~~~~~~~~~~~~fD~I~~n~~~~~~---~~~l~~~~~~L~~gG~liis~~~~~~~~~~~~~~~  209 (237)
                           .....++||+|+|..+++|+   ..++..+.+++||||.+++|.+-.+....+...+.
T Consensus       118 -----l~~~~~~FDvV~cmEVlEHv~dp~~~~~~c~~lvkP~G~lf~STinrt~ka~~~~i~~  175 (243)
T COG2227         118 -----LASAGGQFDVVTCMEVLEHVPDPESFLRACAKLVKPGGILFLSTINRTLKAYLLAIIG  175 (243)
T ss_pred             -----HHhcCCCccEEEEhhHHHccCCHHHHHHHHHHHcCCCcEEEEeccccCHHHHHHHHHH
Confidence                 11124799999999999887   46899999999999999999887665554444443

>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional

Probab=99.72  E-value=6.6e-16  Score=136.02  Aligned_cols=167  Identities=14%  Similarity=0.181  Sum_probs=121.3

Q ss_pred             ceeEEeCcccccCCCCchhHHHHHHHHHhhccCCCeEEEEcCcchHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHHc
Q 026513           38 ATNIILNPGLAFGSGEHATTKLCLLLLRRLIKGGELFLDYGTGSGILGIAAIKF-GAAMSVGADIDPQAIKSAHQNAALN  116 (237)
Q Consensus        38 ~~~~~~~~~~~f~~g~~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~la~~-~~~~v~~vD~s~~~i~~a~~~~~~~  116 (237)
                      ...+.-.|+.+-..+....++++++.+..  ..+.+|||+|||+|.+++.+++. +..+|+++|+|+.+++.|++|+..+
T Consensus       198 ~~~~~~~~gVFs~~~LD~GtrllL~~lp~--~~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n  275 (378)
T PRK15001        198 DWTIHNHANVFSRTGLDIGARFFMQHLPE--NLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETN  275 (378)
T ss_pred             eEEEEecCCccCCCCcChHHHHHHHhCCc--ccCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc
Confidence            45666778888777778888888887743  22458999999999999999865 6778999999999999999999888


Q ss_pred             CCCCCcceEEeccCccccccccccccccccccccccccCCCCCCceeEEEEeCChHH--------HHHHHHHHhHhcCCC
Q 026513          117 NIGPKKMKLHLVPDRTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLNP--------LLQLADHIVSYAKPG  188 (237)
Q Consensus       117 ~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~~~--------~~~~l~~~~~~L~~g  188 (237)
                      +... ..++++...|..+                    .. ...+||+|+||||++.        ..+++..+.+.|+||
T Consensus       276 ~~~~-~~~v~~~~~D~l~--------------------~~-~~~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpG  333 (378)
T PRK15001        276 MPEA-LDRCEFMINNALS--------------------GV-EPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKIN  333 (378)
T ss_pred             Cccc-CceEEEEEccccc--------------------cC-CCCCEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccC
Confidence            6431 1146777777652                    11 2458999999999853        346789999999999


Q ss_pred             eEEEEeccCCCCHHHHHHHHhhccccceee-ecCCEEEEEEEEc
Q 026513          189 AVVGISGILSEQLPHIINRYSEFLEDILVS-EMDDWTCVSGKKK  231 (237)
Q Consensus       189 G~liis~~~~~~~~~~~~~~~~~~~~~~~~-~~~~w~~~~~~~~  231 (237)
                      |.+++.....-   .+...++..|...++. ....+..+...|.
T Consensus       334 G~L~iV~nr~l---~y~~~L~~~fg~~~~va~~~kf~vl~a~k~  374 (378)
T PRK15001        334 GELYIVANRHL---DYFHKLKKIFGNCTTIATNNKFVVLKAVKL  374 (378)
T ss_pred             CEEEEEEecCc---CHHHHHHHHcCCceEEccCCCEEEEEEEeC
Confidence            99999854222   2333333344444444 4556777777763

>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific

Probab=99.71  E-value=1.3e-15  Score=130.15  Aligned_cols=161  Identities=16%  Similarity=0.171  Sum_probs=112.3

Q ss_pred             ceeEEeCcccccCCCCchhHHHHHHHHHhhc--cCCCeEEEEcCcchHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHH
Q 026513           38 ATNIILNPGLAFGSGEHATTKLCLLLLRRLI--KGGELFLDYGTGSGILGIAAIKF-GAAMSVGADIDPQAIKSAHQNAA  114 (237)
Q Consensus        38 ~~~~~~~~~~~f~~g~~~~~~~~~~~l~~~~--~~~~~vLDlG~G~G~~~~~la~~-~~~~v~~vD~s~~~i~~a~~~~~  114 (237)
                      ...+.++|+..+-  ...+..++...+...+  .++.+|||+|||+|.+++.+++. +..+++|+|+|+.+++.|++|+.
T Consensus        89 g~~f~v~~~vlip--r~~te~lv~~~l~~~~~~~~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~  166 (284)
T TIGR03533        89 GLEFYVDERVLIP--RSPIAELIEDGFAPWLEPEPVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIE  166 (284)
T ss_pred             CcEEEECCCCccC--CCchHHHHHHHHHHHhccCCCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH
Confidence            3567778876652  1334455555554332  34578999999999999999975 45789999999999999999999


Q ss_pred             HcCCCCCcceEEeccCccccccccccccccccccccccccCCCCCCceeEEEEeCChH----------------------
Q 026513          115 LNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLN----------------------  172 (237)
Q Consensus       115 ~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~~----------------------  172 (237)
                      .+++.+   ++.++++|+.+                    .+ +..+||+|++|||+.                      
T Consensus       167 ~~~~~~---~i~~~~~D~~~--------------------~~-~~~~fD~Iv~NPPy~~~~~~~~l~~~~~~ep~~al~g  222 (284)
T TIGR03533       167 RHGLED---RVTLIQSDLFA--------------------AL-PGRKYDLIVSNPPYVDAEDMADLPAEYHHEPELALAS  222 (284)
T ss_pred             HcCCCC---cEEEEECchhh--------------------cc-CCCCccEEEECCCCCCccchhhCCHhhhcCHHHHhcC
Confidence            998764   48888999763                    11 245799999999841                      


Q ss_pred             ------HHHHHHHHHhHhcCCCeEEEEeccCCCCHHHHHHHHhhc-cccceeeecCCEEEEE
Q 026513          173 ------PLLQLADHIVSYAKPGAVVGISGILSEQLPHIINRYSEF-LEDILVSEMDDWTCVS  227 (237)
Q Consensus       173 ------~~~~~l~~~~~~L~~gG~liis~~~~~~~~~~~~~~~~~-~~~~~~~~~~~w~~~~  227 (237)
                            .+..++..+.+.|+|||++++..-.  +..++...+.+. |.. .....++|..+.
T Consensus       223 g~dGl~~~~~il~~a~~~L~~gG~l~~e~g~--~~~~v~~~~~~~~~~~-~~~~~~~~~~~~  281 (284)
T TIGR03533       223 GEDGLDLVRRILAEAADHLNENGVLVVEVGN--SMEALEEAYPDVPFTW-LEFENGGDGVFL  281 (284)
T ss_pred             CCcHHHHHHHHHHHHHHhcCCCCEEEEEECc--CHHHHHHHHHhCCCce-eeecCCCcEEEE
Confidence                  2356788899999999999985322  224666666653 322 233444454443

Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.

>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]

Probab=99.71  E-value=2.3e-16  Score=130.26  Aligned_cols=119  Identities=18%  Similarity=0.246  Sum_probs=99.6

Q ss_pred             cCCCeEEEEcCcchHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccc
Q 026513           69 KGGELFLDYGTGSGILGIAAIKF-GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVED  147 (237)
Q Consensus        69 ~~~~~vLDlG~G~G~~~~~la~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  147 (237)
                      .+|.+|||+|||||-+++.+++. |..+|+|+|+|+.|++.|++.+...+..+    ++++++|+.+             
T Consensus        50 ~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~----i~fv~~dAe~-------------  112 (238)
T COG2226          50 KPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQN----VEFVVGDAEN-------------  112 (238)
T ss_pred             CCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccc----eEEEEechhh-------------
Confidence            37999999999999999999975 67899999999999999999999877775    8899999874             


Q ss_pred             cccccccCCCCCCceeEEEEeCChHHH---HHHHHHHhHhcCCCeEEEEeccCCCCHHHHHHHHhhc
Q 026513          148 LSSHKIRGISQTEKYDVVIANILLNPL---LQLADHIVSYAKPGAVVGISGILSEQLPHIINRYSEF  211 (237)
Q Consensus       148 ~~~~~~~~~~~~~~fD~I~~n~~~~~~---~~~l~~~~~~L~~gG~liis~~~~~~~~~~~~~~~~~  211 (237)
                             .+.++.+||+|.+...++.+   .+.++++.|+|||||++++..+.......+...+..+
T Consensus       113 -------LPf~D~sFD~vt~~fglrnv~d~~~aL~E~~RVlKpgG~~~vle~~~p~~~~~~~~~~~~  172 (238)
T COG2226         113 -------LPFPDNSFDAVTISFGLRNVTDIDKALKEMYRVLKPGGRLLVLEFSKPDNPVLRKAYILY  172 (238)
T ss_pred             -------CCCCCCccCEEEeeehhhcCCCHHHHHHHHHHhhcCCeEEEEEEcCCCCchhhHHHHHHH
Confidence                   33558899999998876554   5679999999999999999888766655555555443

>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.70  E-value=1.7e-15  Score=130.77  Aligned_cols=164  Identities=16%  Similarity=0.193  Sum_probs=113.7

Q ss_pred             ceeEEeCcccccCCCCchhHHHHHHHHHhhccC--CCeEEEEcCcchHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHH
Q 026513           38 ATNIILNPGLAFGSGEHATTKLCLLLLRRLIKG--GELFLDYGTGSGILGIAAIKF-GAAMSVGADIDPQAIKSAHQNAA  114 (237)
Q Consensus        38 ~~~~~~~~~~~f~~g~~~~~~~~~~~l~~~~~~--~~~vLDlG~G~G~~~~~la~~-~~~~v~~vD~s~~~i~~a~~~~~  114 (237)
                      ...+.++|+..+-  ...+..++...+...++.  ..+|||+|||+|.+++.++.. +..+|+++|+|+.+++.|++|+.
T Consensus       101 g~~f~v~~~vlip--r~~te~lv~~~l~~~~~~~~~~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~  178 (307)
T PRK11805        101 GLEFYVDERVLVP--RSPIAELIEDGFAPWLEDPPVTRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIE  178 (307)
T ss_pred             CcEEEECCCCcCC--CCchHHHHHHHHHHHhccCCCCEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHH
Confidence            3567777776552  233445555544433232  268999999999999999865 56789999999999999999999


Q ss_pred             HcCCCCCcceEEeccCccccccccccccccccccccccccCCCCCCceeEEEEeCChH----------------------
Q 026513          115 LNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLN----------------------  172 (237)
Q Consensus       115 ~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~~----------------------  172 (237)
                      .+++.+   ++.++++|+.+                    .+ +..+||+|++|||+.                      
T Consensus       179 ~~~l~~---~i~~~~~D~~~--------------------~l-~~~~fDlIvsNPPyi~~~~~~~l~~~~~~eP~~AL~g  234 (307)
T PRK11805        179 RHGLED---RVTLIESDLFA--------------------AL-PGRRYDLIVSNPPYVDAEDMADLPAEYRHEPELALAA  234 (307)
T ss_pred             HhCCCC---cEEEEECchhh--------------------hC-CCCCccEEEECCCCCCccchhhcCHhhccCccceeeC
Confidence            988764   48888999763                    11 245899999999741                      


Q ss_pred             ------HHHHHHHHHhHhcCCCeEEEEeccCCCCHHHHHHHHhhc-cccceeeecCCEEEEEEE
Q 026513          173 ------PLLQLADHIVSYAKPGAVVGISGILSEQLPHIINRYSEF-LEDILVSEMDDWTCVSGK  229 (237)
Q Consensus       173 ------~~~~~l~~~~~~L~~gG~liis~~~~~~~~~~~~~~~~~-~~~~~~~~~~~w~~~~~~  229 (237)
                            .+..++..+.++|+|||.+++..-. . ..++...+... +........+.|..+..+
T Consensus       235 g~dGl~~~~~i~~~a~~~L~pgG~l~~E~g~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (307)
T PRK11805        235 GDDGLDLVRRILAEAPDYLTEDGVLVVEVGN-S-RVHLEEAYPDVPFTWLEFENGGDGVFLLTR  296 (307)
T ss_pred             CCchHHHHHHHHHHHHHhcCCCCEEEEEECc-C-HHHHHHHHhhCCCEEEEecCCCceEEEEEH
Confidence                  2346788899999999999985222 2 33455555543 434444455556555543

>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed

Probab=99.70  E-value=6.8e-16  Score=139.67  Aligned_cols=157  Identities=13%  Similarity=0.058  Sum_probs=121.2

Q ss_pred             ceeEEeCcccccCCCCchhHHHHHHHHHhh-ccCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHc
Q 026513           38 ATNIILNPGLAFGSGEHATTKLCLLLLRRL-IKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALN  116 (237)
Q Consensus        38 ~~~~~~~~~~~f~~g~~~~~~~~~~~l~~~-~~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~  116 (237)
                      ...+.+.|+.+|+.+...+..+....+... ..++.+|||+|||+|.+++.+++.+ .+|+|+|+|+.+++.|++|+..+
T Consensus       264 g~~f~~~~~~F~q~n~~~~e~l~~~vl~~l~~~~~~~VLDlgcGtG~~sl~la~~~-~~V~gvD~s~~al~~A~~n~~~~  342 (443)
T PRK13168        264 GLRLAFSPRDFIQVNAQVNQKMVARALEWLDPQPGDRVLDLFCGLGNFTLPLARQA-AEVVGVEGVEAMVERARENARRN  342 (443)
T ss_pred             CeEEEECCCCeEEcCHHHHHHHHHHHHHHhcCCCCCEEEEEeccCCHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHc
Confidence            467888888888876665555554444432 3567899999999999999999874 68999999999999999999999


Q ss_pred             CCCCCcceEEeccCccccccccccccccccccccccccC-CCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEec
Q 026513          117 NIGPKKMKLHLVPDRTFTASMNERVDGVVEDLSSHKIRG-ISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISG  195 (237)
Q Consensus       117 ~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~  195 (237)
                      ++.+    +.++++|+.+..                 .. ...+.+||+|++|||+....+.+..+.+ ++|++.+|+||
T Consensus       343 ~~~~----v~~~~~d~~~~l-----------------~~~~~~~~~fD~Vi~dPPr~g~~~~~~~l~~-~~~~~ivyvSC  400 (443)
T PRK13168        343 GLDN----VTFYHANLEEDF-----------------TDQPWALGGFDKVLLDPPRAGAAEVMQALAK-LGPKRIVYVSC  400 (443)
T ss_pred             CCCc----eEEEEeChHHhh-----------------hhhhhhcCCCCEEEECcCCcChHHHHHHHHh-cCCCeEEEEEe
Confidence            8875    889999986311                 01 1123579999999998877777766655 69999999999


Q ss_pred             cCCCCHHHHHHHHhhcccccee
Q 026513          196 ILSEQLPHIINRYSEFLEDILV  217 (237)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~  217 (237)
                      ...+..+++.......|....+
T Consensus       401 np~tlaRDl~~L~~~gY~l~~i  422 (443)
T PRK13168        401 NPATLARDAGVLVEAGYRLKRA  422 (443)
T ss_pred             ChHHhhccHHHHhhCCcEEEEE
Confidence            9888888888776665544443

>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional

Probab=99.69  E-value=3e-15  Score=132.39  Aligned_cols=152  Identities=18%  Similarity=0.226  Sum_probs=111.9

Q ss_pred             ceeEEeCcccccCCCCchhHHHHHHHHHhhccCCCeEEEEcCcchHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHHc
Q 026513           38 ATNIILNPGLAFGSGEHATTKLCLLLLRRLIKGGELFLDYGTGSGILGIAAIKF-GAAMSVGADIDPQAIKSAHQNAALN  116 (237)
Q Consensus        38 ~~~~~~~~~~~f~~g~~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~la~~-~~~~v~~vD~s~~~i~~a~~~~~~~  116 (237)
                      ...+.++|+..+   .++.+..+.+.+...++++.+|||+|||+|.+++.+++. +..+++++|+|+.+++.|++|+..+
T Consensus       222 G~~f~V~p~vLI---PRpeTE~LVe~aL~~l~~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~  298 (423)
T PRK14966        222 GRRFAVNPNVLI---PRPETEHLVEAVLARLPENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADL  298 (423)
T ss_pred             CcEEEeCCCccC---CCccHHHHHHHhhhccCCCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc
Confidence            456788887655   367777777776555566779999999999999998864 6788999999999999999999887


Q ss_pred             CCCCCcceEEeccCccccccccccccccccccccccccCCCCCCceeEEEEeCCh-------------------------
Q 026513          117 NIGPKKMKLHLVPDRTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILL-------------------------  171 (237)
Q Consensus       117 ~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~-------------------------  171 (237)
                      +.     ++.++++|+++..                   ....++||+|+||||+                         
T Consensus       299 g~-----rV~fi~gDl~e~~-------------------l~~~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~  354 (423)
T PRK14966        299 GA-----RVEFAHGSWFDTD-------------------MPSEGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFS  354 (423)
T ss_pred             CC-----cEEEEEcchhccc-------------------cccCCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCC
Confidence            64     3888899986311                   1113579999999984                         


Q ss_pred             ---HHHHHHHHHHhHhcCCCeEEEEeccCCCCHHHHHHHHhhc-ccccee
Q 026513          172 ---NPLLQLADHIVSYAKPGAVVGISGILSEQLPHIINRYSEF-LEDILV  217 (237)
Q Consensus       172 ---~~~~~~l~~~~~~L~~gG~liis~~~~~~~~~~~~~~~~~-~~~~~~  217 (237)
                         ..++++++.+.+.|+|||.+++. +-.++...+...+... |..+++
T Consensus       355 dGL~~yr~Ii~~a~~~LkpgG~lilE-iG~~Q~e~V~~ll~~~Gf~~v~v  403 (423)
T PRK14966        355 DGLSCIRTLAQGAPDRLAEGGFLLLE-HGFDQGAAVRGVLAENGFSGVET  403 (423)
T ss_pred             chHHHHHHHHHHHHHhcCCCcEEEEE-ECccHHHHHHHHHHHCCCcEEEE
Confidence               12346778888999999998873 2235556666666553 544433

>TIGR00537 hemK_rel_arch HemK-related putative methylase

Probab=99.69  E-value=1.5e-15  Score=121.22  Aligned_cols=132  Identities=26%  Similarity=0.319  Sum_probs=99.6

Q ss_pred             hHHHHHHHHHhhccCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccc
Q 026513           56 TTKLCLLLLRRLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTA  135 (237)
Q Consensus        56 ~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~  135 (237)
                      .+.++...+.  ..++.+|||+|||+|.++..++..+. +++++|+|+.+++.+++++..+++.     +.++.+|..+ 
T Consensus         7 d~~~l~~~l~--~~~~~~vLdlG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~-----~~~~~~d~~~-   77 (179)
T TIGR00537         7 DSLLLEANLR--ELKPDDVLEIGAGTGLVAIRLKGKGK-CILTTDINPFAVKELRENAKLNNVG-----LDVVMTDLFK-   77 (179)
T ss_pred             cHHHHHHHHH--hcCCCeEEEeCCChhHHHHHHHhcCC-EEEEEECCHHHHHHHHHHHHHcCCc-----eEEEEccccc-
Confidence            3344444443  23467899999999999999998765 8999999999999999999877653     6777888652 


Q ss_pred             cccccccccccccccccccCCCCCCceeEEEEeCChH------------------------HHHHHHHHHhHhcCCCeEE
Q 026513          136 SMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLN------------------------PLLQLADHIVSYAKPGAVV  191 (237)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~~------------------------~~~~~l~~~~~~L~~gG~l  191 (237)
                                          .. .++||+|++|+|++                        .+.+++..+.++|+|||.+
T Consensus        78 --------------------~~-~~~fD~Vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~  136 (179)
T TIGR00537        78 --------------------GV-RGKFDVILFNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRV  136 (179)
T ss_pred             --------------------cc-CCcccEEEECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEE
Confidence                                11 35899999999862                        1346789999999999999


Q ss_pred             EEeccCCCCHHHHHHHHhhc-ccccee
Q 026513          192 GISGILSEQLPHIINRYSEF-LEDILV  217 (237)
Q Consensus       192 iis~~~~~~~~~~~~~~~~~-~~~~~~  217 (237)
                      ++.........++...+.+. |....+
T Consensus       137 ~~~~~~~~~~~~~~~~l~~~gf~~~~~  163 (179)
T TIGR00537       137 QLIQSSLNGEPDTFDKLDERGFRYEIV  163 (179)
T ss_pred             EEEEeccCChHHHHHHHHhCCCeEEEE
Confidence            99766666567777777654 544433

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.

>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated

Probab=99.68  E-value=1.9e-15  Score=121.52  Aligned_cols=124  Identities=17%  Similarity=0.270  Sum_probs=99.5

Q ss_pred             ccCCCeEEEEcCcchHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccc
Q 026513           68 IKGGELFLDYGTGSGILGIAAIKF-GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVE  146 (237)
Q Consensus        68 ~~~~~~vLDlG~G~G~~~~~la~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  146 (237)
                      +.++.+|||+|||+|.+++.+++. +..+|+++|+++.+++.|++++..+++.+    +.++.+|...            
T Consensus        29 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~----i~~~~~d~~~------------   92 (187)
T PRK08287         29 LHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGN----IDIIPGEAPI------------   92 (187)
T ss_pred             CCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCC----eEEEecCchh------------
Confidence            357889999999999999998875 45789999999999999999998887753    7777777531            


Q ss_pred             ccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEeccCCCCHHHHHHHHhhc-ccccee
Q 026513          147 DLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILSEQLPHIINRYSEF-LEDILV  217 (237)
Q Consensus       147 ~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~~~~~~~~~~~~~~~~~-~~~~~~  217 (237)
                              ..  ..+||+|+++.....+..++..+.+.|+|||++++..+...+..++...+.+. |..++.
T Consensus        93 --------~~--~~~~D~v~~~~~~~~~~~~l~~~~~~Lk~gG~lv~~~~~~~~~~~~~~~l~~~g~~~~~~  154 (187)
T PRK08287         93 --------EL--PGKADAIFIGGSGGNLTAIIDWSLAHLHPGGRLVLTFILLENLHSALAHLEKCGVSELDC  154 (187)
T ss_pred             --------hc--CcCCCEEEECCCccCHHHHHHHHHHhcCCCeEEEEEEecHhhHHHHHHHHHHCCCCcceE
Confidence                    11  35799999988766678889999999999999999876666777777777654 544443

>PRK14967 putative methyltransferase; Provisional

Probab=99.68  E-value=2.7e-15  Score=123.92  Aligned_cols=129  Identities=28%  Similarity=0.316  Sum_probs=96.9

Q ss_pred             hHHHHHHHHHh-hccCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccc
Q 026513           56 TTKLCLLLLRR-LIKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFT  134 (237)
Q Consensus        56 ~~~~~~~~l~~-~~~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~  134 (237)
                      .+..+...+.. .+.++.+|||+|||+|.++..+++.+..+++++|+|+.+++.+++|+..+++.     +.++.+|+.+
T Consensus        21 ds~~l~~~l~~~~~~~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~-----~~~~~~d~~~   95 (223)
T PRK14967         21 DTQLLADALAAEGLGPGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALLAGVD-----VDVRRGDWAR   95 (223)
T ss_pred             cHHHHHHHHHhcccCCCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhCCe-----eEEEECchhh
Confidence            34455555543 25678899999999999999998877668999999999999999999887653     6677788652


Q ss_pred             ccccccccccccccccccccCCCCCCceeEEEEeCChHH------------------------HHHHHHHHhHhcCCCeE
Q 026513          135 ASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLNP------------------------LLQLADHIVSYAKPGAV  190 (237)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~~~------------------------~~~~l~~~~~~L~~gG~  190 (237)
                                           ..++.+||+|++|+|+..                        +..+++.+.++|++||.
T Consensus        96 ---------------------~~~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~  154 (223)
T PRK14967         96 ---------------------AVEFRPFDVVVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGS  154 (223)
T ss_pred             ---------------------hccCCCeeEEEECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcE
Confidence                                 123568999999987431                        34577889999999999


Q ss_pred             EEEeccCCCCHHHHHHHHhh
Q 026513          191 VGISGILSEQLPHIINRYSE  210 (237)
Q Consensus       191 liis~~~~~~~~~~~~~~~~  210 (237)
                      +++...-.....+++..+..
T Consensus       155 l~~~~~~~~~~~~~~~~l~~  174 (223)
T PRK14967        155 LLLVQSELSGVERTLTRLSE  174 (223)
T ss_pred             EEEEEecccCHHHHHHHHHH
Confidence            99853333345566666654

>PRK12335 tellurite resistance protein TehB; Provisional

Probab=99.68  E-value=4e-16  Score=133.65  Aligned_cols=161  Identities=17%  Similarity=0.179  Sum_probs=112.6

Q ss_pred             chhhHHHhhhcCccEEEcCceEEecCCCCCC-C----CCceeEEeCcccccCCCCc--hhHHHHHHHHHhhccCCCeEEE
Q 026513            4 QCNWIKKTQQSFHPVEVTKGLWIVPEWGAPP-D----VQATNIILNPGLAFGSGEH--ATTKLCLLLLRRLIKGGELFLD   76 (237)
Q Consensus         4 ~~~w~~~w~~~~~~~~~~~~~~~~~~~~~~~-~----~~~~~~~~~~~~~f~~g~~--~~~~~~~~~l~~~~~~~~~vLD   76 (237)
                      +++|...|+..+.|..... ++..+.|+... .    .-.+++...|...|.....  .....++..+. ..+ +.+|||
T Consensus        50 de~g~~~~~~~l~~~~~~~-~i~p~~wh~v~~~s~d~~~~l~fy~~~~~~f~~~~~~~~~~~~~~~~~~-~~~-~~~vLD  126 (287)
T PRK12335         50 TEDGEELSEHIFDAENQPP-FIEPQAWHRIEAASDDLECQLSFYCKPEDYFHKKYNLTATHSEVLEAVQ-TVK-PGKALD  126 (287)
T ss_pred             CCCCCeeeEEEEecCCCCc-eeCCcceEEEEEcCCCcEEEEEEEEcchhhHhhhhccccccHHHHHHhh-ccC-CCCEEE
Confidence            4566677777666663222 33344577621 1    2234577788877765542  33444444443 233 449999


Q ss_pred             EcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccccccccccCC
Q 026513           77 YGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDLSSHKIRGI  156 (237)
Q Consensus        77 lG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~  156 (237)
                      +|||+|..+..+++.| .+|+|+|+|+.+++.+++++..+++ +    +.+...|+..                     .
T Consensus       127 lGcG~G~~~~~la~~g-~~V~avD~s~~ai~~~~~~~~~~~l-~----v~~~~~D~~~---------------------~  179 (287)
T PRK12335        127 LGCGQGRNSLYLALLG-FDVTAVDINQQSLENLQEIAEKENL-N----IRTGLYDINS---------------------A  179 (287)
T ss_pred             eCCCCCHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHHcCC-c----eEEEEechhc---------------------c
Confidence            9999999999999886 5799999999999999999988876 2    6666666542                     1


Q ss_pred             CCCCceeEEEEeCChHH-----HHHHHHHHhHhcCCCeEEEEe
Q 026513          157 SQTEKYDVVIANILLNP-----LLQLADHIVSYAKPGAVVGIS  194 (237)
Q Consensus       157 ~~~~~fD~I~~n~~~~~-----~~~~l~~~~~~L~~gG~liis  194 (237)
                      ..+++||+|+++.++++     ...+++.+.++|+|||++++.
T Consensus       180 ~~~~~fD~I~~~~vl~~l~~~~~~~~l~~~~~~LkpgG~~l~v  222 (287)
T PRK12335        180 SIQEEYDFILSTVVLMFLNRERIPAIIKNMQEHTNPGGYNLIV  222 (287)
T ss_pred             cccCCccEEEEcchhhhCCHHHHHHHHHHHHHhcCCCcEEEEE
Confidence            12568999999887653     457899999999999997663

>COG4123 Predicted O-methyltransferase [General function prediction only]

Probab=99.67  E-value=1.9e-15  Score=124.92  Aligned_cols=121  Identities=24%  Similarity=0.327  Sum_probs=97.5

Q ss_pred             cCCCeEEEEcCcchHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccc
Q 026513           69 KGGELFLDYGTGSGILGIAAIKF-GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVED  147 (237)
Q Consensus        69 ~~~~~vLDlG~G~G~~~~~la~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  147 (237)
                      ....+|||+|||+|.+++.++.. ...++++||+++++.+.|++|+..+++..   +++++++|+.+..           
T Consensus        43 ~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~---ri~v~~~Di~~~~-----------  108 (248)
T COG4123          43 PKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEE---RIQVIEADIKEFL-----------  108 (248)
T ss_pred             ccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchh---ceeEehhhHHHhh-----------
Confidence            34679999999999999999976 66889999999999999999999999887   6999999986322           


Q ss_pred             cccccccCCCCCCceeEEEEeCChH---------------------HHHHHHHHHhHhcCCCeEEEEeccCCCCHHHHHH
Q 026513          148 LSSHKIRGISQTEKYDVVIANILLN---------------------PLLQLADHIVSYAKPGAVVGISGILSEQLPHIIN  206 (237)
Q Consensus       148 ~~~~~~~~~~~~~~fD~I~~n~~~~---------------------~~~~~l~~~~~~L~~gG~liis~~~~~~~~~~~~  206 (237)
                             ......+||+|+||||+.                     ...++++.+..+|||||.+++. ...+...++..
T Consensus       109 -------~~~~~~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V-~r~erl~ei~~  180 (248)
T COG4123         109 -------KALVFASFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFV-HRPERLAEIIE  180 (248)
T ss_pred             -------hcccccccCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEE-ecHHHHHHHHH
Confidence                   222234799999999941                     1246789999999999999984 34556667777


Q ss_pred             HHhhc
Q 026513          207 RYSEF  211 (237)
Q Consensus       207 ~~~~~  211 (237)
                      .++.+
T Consensus       181 ~l~~~  185 (248)
T COG4123         181 LLKSY  185 (248)
T ss_pred             HHHhc
Confidence            77763

>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional

Probab=99.67  E-value=4.7e-15  Score=131.82  Aligned_cols=152  Identities=18%  Similarity=0.194  Sum_probs=111.9

Q ss_pred             ceeEEeCcccccCCCCchhHHHHHHHHHhhccCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcC
Q 026513           38 ATNIILNPGLAFGSGEHATTKLCLLLLRRLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNN  117 (237)
Q Consensus        38 ~~~~~~~~~~~f~~g~~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~  117 (237)
                      ...+.++......+|..-..+.....+... .+|++|||+|||+|.+++.++..++.+|+++|+|+.+++.|++|+..|+
T Consensus       189 g~~f~vdl~~g~ktG~flDqr~~R~~~~~~-~~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~Ng  267 (396)
T PRK15128        189 GMKLLVDIQGGHKTGYYLDQRDSRLATRRY-VENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNK  267 (396)
T ss_pred             CEEEEEecccccccCcChhhHHHHHHHHHh-cCCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC
Confidence            456666666666677776665555555443 4688999999999999998777777899999999999999999999999


Q ss_pred             CCCCcceEEeccCccccccccccccccccccccccccCCC-CCCceeEEEEeCCh------------HHHHHHHHHHhHh
Q 026513          118 IGPKKMKLHLVPDRTFTASMNERVDGVVEDLSSHKIRGIS-QTEKYDVVIANILL------------NPLLQLADHIVSY  184 (237)
Q Consensus       118 ~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~fD~I~~n~~~------------~~~~~~l~~~~~~  184 (237)
                      +...  ++.++++|+++..                 ..+. ..++||+|++|||.            ..+..++..+.++
T Consensus       268 l~~~--~v~~i~~D~~~~l-----------------~~~~~~~~~fDlVilDPP~f~~~k~~l~~~~~~y~~l~~~a~~l  328 (396)
T PRK15128        268 LDLS--KAEFVRDDVFKLL-----------------RTYRDRGEKFDVIVMDPPKFVENKSQLMGACRGYKDINMLAIQL  328 (396)
T ss_pred             CCCC--cEEEEEccHHHHH-----------------HHHHhcCCCCCEEEECCCCCCCChHHHHHHHHHHHHHHHHHHHH
Confidence            8521  3788999987421                 1111 14589999999994            2345667788899


Q ss_pred             cCCCeEEEE-eccCCCCHHHHHHHHh
Q 026513          185 AKPGAVVGI-SGILSEQLPHIINRYS  209 (237)
Q Consensus       185 L~~gG~lii-s~~~~~~~~~~~~~~~  209 (237)
                      |+|||.+++ ||...-+..++.+.+.
T Consensus       329 Lk~gG~lv~~scs~~~~~~~f~~~v~  354 (396)
T PRK15128        329 LNPGGILLTFSCSGLMTSDLFQKIIA  354 (396)
T ss_pred             cCCCeEEEEEeCCCcCCHHHHHHHHH
Confidence            999999986 4554444455555554

>TIGR00138 gidB 16S rRNA methyltransferase GidB

Probab=99.67  E-value=1.6e-15  Score=121.44  Aligned_cols=112  Identities=18%  Similarity=0.197  Sum_probs=89.7

Q ss_pred             CCCeEEEEcCcchHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccccc
Q 026513           70 GGELFLDYGTGSGILGIAAIKF-GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDL  148 (237)
Q Consensus        70 ~~~~vLDlG~G~G~~~~~la~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~  148 (237)
                      ++.+|||+|||+|.+++.++.. +..+|+++|+|+.+++.++++++.+++.+    +.++++|+.+              
T Consensus        42 ~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~----i~~i~~d~~~--------------  103 (181)
T TIGR00138        42 DGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLNN----VEIVNGRAED--------------  103 (181)
T ss_pred             CCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCCC----eEEEecchhh--------------
Confidence            4789999999999999998765 45789999999999999999999888764    8888998762              


Q ss_pred             ccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEeccCCCCHHHHHHHH
Q 026513          149 SSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILSEQLPHIINRY  208 (237)
Q Consensus       149 ~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~~~~~~~~~~~~~~  208 (237)
                             +...++||+|+++. ++.+..+++.+.++|+|||.+++.. ......++....
T Consensus       104 -------~~~~~~fD~I~s~~-~~~~~~~~~~~~~~LkpgG~lvi~~-~~~~~~~~~~~~  154 (181)
T TIGR00138       104 -------FQHEEQFDVITSRA-LASLNVLLELTLNLLKVGGYFLAYK-GKKYLDEIEEAK  154 (181)
T ss_pred             -------ccccCCccEEEehh-hhCHHHHHHHHHHhcCCCCEEEEEc-CCCcHHHHHHHH
Confidence                   12256899999988 6667788899999999999999863 334444444443

GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.

>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]

Probab=99.66  E-value=1e-14  Score=124.17  Aligned_cols=144  Identities=23%  Similarity=0.294  Sum_probs=102.0

Q ss_pred             ceeEEeCcccccCCCCchhHHHHHHHHHhhccCCC-eEEEEcCcchHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHH
Q 026513           38 ATNIILNPGLAFGSGEHATTKLCLLLLRRLIKGGE-LFLDYGTGSGILGIAAIKF-GAAMSVGADIDPQAIKSAHQNAAL  115 (237)
Q Consensus        38 ~~~~~~~~~~~f~~g~~~~~~~~~~~l~~~~~~~~-~vLDlG~G~G~~~~~la~~-~~~~v~~vD~s~~~i~~a~~~~~~  115 (237)
                      ...+.++++...-   ++.+..+++.+........ +|||+|||||.+++.+++. +..+|+|+|+|+.+++.|++|+..
T Consensus        80 gl~~~v~~~vliP---r~dTe~Lve~~l~~~~~~~~~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~  156 (280)
T COG2890          80 GLRFKVDEGVLIP---RPDTELLVEAALALLLQLDKRILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAER  156 (280)
T ss_pred             ceeeeeCCCceec---CCchHHHHHHHHHhhhhcCCcEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHH
Confidence            3455555553222   4555555555332222222 7999999999999999976 556899999999999999999999


Q ss_pred             cCCCCCcceEEeccCccccccccccccccccccccccccCCCCCCceeEEEEeCCh------------------------
Q 026513          116 NNIGPKKMKLHLVPDRTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILL------------------------  171 (237)
Q Consensus       116 ~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~------------------------  171 (237)
                      +++.    ++.++.+|+++                    ..  .++||+|++|||+                        
T Consensus       157 ~~l~----~~~~~~~dlf~--------------------~~--~~~fDlIVsNPPYip~~~~~~~~~~~~~EP~~Al~~g  210 (280)
T COG2890         157 NGLV----RVLVVQSDLFE--------------------PL--RGKFDLIVSNPPYIPAEDPELLPEVVRYEPLLALVGG  210 (280)
T ss_pred             cCCc----cEEEEeeeccc--------------------cc--CCceeEEEeCCCCCCCcccccChhhhccCHHHHHccC
Confidence            9984    36677778774                    22  3499999999993                        


Q ss_pred             ----HHHHHHHHHHhHhcCCCeEEEEeccCCCCHHHHHHHHhhc
Q 026513          172 ----NPLLQLADHIVSYAKPGAVVGISGILSEQLPHIINRYSEF  211 (237)
Q Consensus       172 ----~~~~~~l~~~~~~L~~gG~liis~~~~~~~~~~~~~~~~~  211 (237)
                          ..+.+++..+...|+|||.+++.. -.++...+...+...
T Consensus       211 ~dGl~~~~~i~~~a~~~l~~~g~l~le~-g~~q~~~v~~~~~~~  253 (280)
T COG2890         211 GDGLEVYRRILGEAPDILKPGGVLILEI-GLTQGEAVKALFEDT  253 (280)
T ss_pred             ccHHHHHHHHHHhhHHHcCCCcEEEEEE-CCCcHHHHHHHHHhc
Confidence                234577899999999999998852 233445555555543

>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific

Probab=99.66  E-value=7.2e-15  Score=123.44  Aligned_cols=145  Identities=21%  Similarity=0.266  Sum_probs=103.2

Q ss_pred             ceeEEeCcccccCCCCchhHHHHHHHHHhhcc---CCCeEEEEcCcchHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHH
Q 026513           38 ATNIILNPGLAFGSGEHATTKLCLLLLRRLIK---GGELFLDYGTGSGILGIAAIKF-GAAMSVGADIDPQAIKSAHQNA  113 (237)
Q Consensus        38 ~~~~~~~~~~~f~~g~~~~~~~~~~~l~~~~~---~~~~vLDlG~G~G~~~~~la~~-~~~~v~~vD~s~~~i~~a~~~~  113 (237)
                      ...+.+.|+..+.   .+.+..+.+.+.....   ++.+|||+|||+|.+++.+++. +..+++++|+|+.+++.|++|+
T Consensus        54 g~~~~v~~~vf~p---r~~Te~Lv~~~l~~~~~~~~~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~  130 (251)
T TIGR03704        54 GLRIAVDPGVFVP---RRRTEFLVDEAAALARPRSGTLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNL  130 (251)
T ss_pred             CeEEEECCCCcCC---CccHHHHHHHHHHhhcccCCCCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHH
Confidence            4567888886652   4444555544433322   2458999999999999998864 5568999999999999999999


Q ss_pred             HHcCCCCCcceEEeccCccccccccccccccccccccccccCCCCCCceeEEEEeCChH---------------------
Q 026513          114 ALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLN---------------------  172 (237)
Q Consensus       114 ~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~~---------------------  172 (237)
                      ..++       ..++++|+.+..                 ... ..++||+|++|||+.                     
T Consensus       131 ~~~~-------~~~~~~D~~~~l-----------------~~~-~~~~fDlVv~NPPy~~~~~~~~~~~e~~~~ep~~al  185 (251)
T TIGR03704       131 ADAG-------GTVHEGDLYDAL-----------------PTA-LRGRVDILAANAPYVPTDAIALMPPEARDHEPRVAL  185 (251)
T ss_pred             HHcC-------CEEEEeechhhc-----------------chh-cCCCEeEEEECCCCCCchhhhcCCHHHHhCCCHHHh
Confidence            8776       246678775311                 000 135799999999852                     


Q ss_pred             --------HHHHHHHHHhHhcCCCeEEEEeccCCCCHHHHHHHHhhc
Q 026513          173 --------PLLQLADHIVSYAKPGAVVGISGILSEQLPHIINRYSEF  211 (237)
Q Consensus       173 --------~~~~~l~~~~~~L~~gG~liis~~~~~~~~~~~~~~~~~  211 (237)
                              .+..++..+.++|+|||++++..- ..+..++...+...
T Consensus       186 ~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~-~~~~~~v~~~l~~~  231 (251)
T TIGR03704       186 DGGADGLDVLRRVAAGAPDWLAPGGHLLVETS-ERQAPLAVEAFARA  231 (251)
T ss_pred             cCCCcHHHHHHHHHHHHHHhcCCCCEEEEEEC-cchHHHHHHHHHHC
Confidence                    134678888899999999998633 45567777777664

This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.

>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A

Probab=99.66  E-value=5.1e-16  Score=115.03  Aligned_cols=103  Identities=28%  Similarity=0.457  Sum_probs=84.3

Q ss_pred             CCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccccccc
Q 026513           71 GELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDLSS  150 (237)
Q Consensus        71 ~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~  150 (237)
                      |.+|||+|||+|.+++.+++.+..+++|+|+++.+++.|+.++...++..   ++.++++|..+..              
T Consensus         1 g~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~~~~~---~~~~~~~D~~~~~--------------   63 (117)
T PF13659_consen    1 GDRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRNGLDD---RVEVIVGDARDLP--------------   63 (117)
T ss_dssp             TEEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHCTTTT---TEEEEESHHHHHH--------------
T ss_pred             CCEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHccCCc---eEEEEECchhhch--------------
Confidence            56899999999999999998877889999999999999999999988754   4889999987421              


Q ss_pred             ccccCCCCCCceeEEEEeCChHH-----------HHHHHHHHhHhcCCCeEEEEe
Q 026513          151 HKIRGISQTEKYDVVIANILLNP-----------LLQLADHIVSYAKPGAVVGIS  194 (237)
Q Consensus       151 ~~~~~~~~~~~fD~I~~n~~~~~-----------~~~~l~~~~~~L~~gG~liis  194 (237)
                          ......+||+|++|||+..           +..++..+.++|+|||.+++.
T Consensus        64 ----~~~~~~~~D~Iv~npP~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~  114 (117)
T PF13659_consen   64 ----EPLPDGKFDLIVTNPPYGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFI  114 (117)
T ss_dssp             ----HTCTTT-EEEEEE--STTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             ----hhccCceeEEEEECCCCccccccchhhHHHHHHHHHHHHHHcCCCeEEEEE
Confidence                1234689999999999642           357799999999999999885

...

>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []

Probab=99.66  E-value=9.2e-16  Score=127.35  Aligned_cols=120  Identities=18%  Similarity=0.249  Sum_probs=84.3

Q ss_pred             ccCCCeEEEEcCcchHHHHHHHHh--CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccc
Q 026513           68 IKGGELFLDYGTGSGILGIAAIKF--GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVV  145 (237)
Q Consensus        68 ~~~~~~vLDlG~G~G~~~~~la~~--~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  145 (237)
                      ..+|.+|||+|||+|.++..+++.  +..+|+|+|+|+.|++.|++++...+..+    ++++++|..+.          
T Consensus        45 ~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~----i~~v~~da~~l----------  110 (233)
T PF01209_consen   45 LRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQN----IEFVQGDAEDL----------  110 (233)
T ss_dssp             --S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--S----EEEEE-BTTB-----------
T ss_pred             CCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCC----eeEEEcCHHHh----------
Confidence            467889999999999999999865  34689999999999999999999887664    99999998642          


Q ss_pred             cccccccccCCCCCCceeEEEEeCChHHH---HHHHHHHhHhcCCCeEEEEeccCCCCHHHHHHHHhhc
Q 026513          146 EDLSSHKIRGISQTEKYDVVIANILLNPL---LQLADHIVSYAKPGAVVGISGILSEQLPHIINRYSEF  211 (237)
Q Consensus       146 ~~~~~~~~~~~~~~~~fD~I~~n~~~~~~---~~~l~~~~~~L~~gG~liis~~~~~~~~~~~~~~~~~  211 (237)
                                ..++.+||+|++...++.+   .+.++++.++|||||.+++-++......-+...+..+
T Consensus       111 ----------p~~d~sfD~v~~~fglrn~~d~~~~l~E~~RVLkPGG~l~ile~~~p~~~~~~~~~~~y  169 (233)
T PF01209_consen  111 ----------PFPDNSFDAVTCSFGLRNFPDRERALREMYRVLKPGGRLVILEFSKPRNPLLRALYKFY  169 (233)
T ss_dssp             -----------S-TT-EEEEEEES-GGG-SSHHHHHHHHHHHEEEEEEEEEEEEEB-SSHHHHHHHHH-
T ss_pred             ----------cCCCCceeEEEHHhhHHhhCCHHHHHHHHHHHcCCCeEEEEeeccCCCCchhhceeeee
Confidence                      2347899999998876544   5679999999999999999887666555444444433

Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.

>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed

Probab=99.66  E-value=4.9e-15  Score=128.52  Aligned_cols=146  Identities=16%  Similarity=0.114  Sum_probs=111.3

Q ss_pred             ceeEEeCcccccCCCCchhHHHHHHHHHhh-ccCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHc
Q 026513           38 ATNIILNPGLAFGSGEHATTKLCLLLLRRL-IKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALN  116 (237)
Q Consensus        38 ~~~~~~~~~~~f~~g~~~~~~~~~~~l~~~-~~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~  116 (237)
                      ...+.+.|+.+|+.+......+........ ..++.+|||+|||+|.+++.++..+ .+|+|+|+++.+++.|++|+..+
T Consensus       140 ~~~~~~~~~sF~Q~n~~~~~~l~~~v~~~l~~~~~~~VLDl~cG~G~~sl~la~~~-~~V~gvD~s~~av~~A~~n~~~~  218 (315)
T PRK03522        140 GVPLFIRPQSFFQTNPAVAAQLYATARDWVRELPPRSMWDLFCGVGGFGLHCATPG-MQLTGIEISAEAIACAKQSAAEL  218 (315)
T ss_pred             CEEEEECCCeeeecCHHHHHHHHHHHHHHHHhcCCCEEEEccCCCCHHHHHHHhcC-CEEEEEeCCHHHHHHHHHHHHHc
Confidence            456888898888877665555443332221 1256899999999999999999875 68999999999999999999999


Q ss_pred             CCCCCcceEEeccCccccccccccccccccccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEecc
Q 026513          117 NIGPKKMKLHLVPDRTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGI  196 (237)
Q Consensus       117 ~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~~  196 (237)
                      ++.+    ++++++|+.+..                  . ....+||+|++|||+..+...+..+...++|++.+|+||.
T Consensus       219 ~l~~----v~~~~~D~~~~~------------------~-~~~~~~D~Vv~dPPr~G~~~~~~~~l~~~~~~~ivyvsc~  275 (315)
T PRK03522        219 GLTN----VQFQALDSTQFA------------------T-AQGEVPDLVLVNPPRRGIGKELCDYLSQMAPRFILYSSCN  275 (315)
T ss_pred             CCCc----eEEEEcCHHHHH------------------H-hcCCCCeEEEECCCCCCccHHHHHHHHHcCCCeEEEEECC
Confidence            9864    889999986311                  0 0134799999999987654444444555789999999999


Q ss_pred             CCCCHHHHHHH
Q 026513          197 LSEQLPHIINR  207 (237)
Q Consensus       197 ~~~~~~~~~~~  207 (237)
                      .....+++...
T Consensus       276 p~t~~rd~~~l  286 (315)
T PRK03522        276 AQTMAKDLAHL  286 (315)
T ss_pred             cccchhHHhhc
Confidence            98888887665

>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]

Probab=99.66  E-value=3.4e-15  Score=131.43  Aligned_cols=154  Identities=17%  Similarity=0.173  Sum_probs=122.3

Q ss_pred             CceeEEeCcccccCCCCchhHHHHHHHHHhhccCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHc
Q 026513           37 QATNIILNPGLAFGSGEHATTKLCLLLLRRLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALN  116 (237)
Q Consensus        37 ~~~~~~~~~~~~f~~g~~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~  116 (237)
                      ..+.+.++....-.+|.+...+.....+..... |++|||+.|-||.+++.++..|+.+|+.||.|..+++.|++|+..|
T Consensus       185 ~g~kf~v~~~~g~kTGfFlDqR~~R~~l~~~~~-GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al~~a~~N~~LN  263 (393)
T COG1092         185 NGVKFLVDLVDGLKTGFFLDQRDNRRALGELAA-GKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENAELN  263 (393)
T ss_pred             CCeEEEEecCCcccceeeHHhHHHHHHHhhhcc-CCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHHHHHHHHHHhc
Confidence            345667777767778889999999999888766 9999999999999999999999999999999999999999999999


Q ss_pred             CCCCCcceEEeccCccccccccccccccccccccccccCCCCCCceeEEEEeCCh------------HHHHHHHHHHhHh
Q 026513          117 NIGPKKMKLHLVPDRTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILL------------NPLLQLADHIVSY  184 (237)
Q Consensus       117 ~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~------------~~~~~~l~~~~~~  184 (237)
                      ++...  ++.++++|+++..         +.+       -..+.+||+|+++||-            ..+..++..+.++
T Consensus       264 g~~~~--~~~~i~~Dvf~~l---------~~~-------~~~g~~fDlIilDPPsF~r~k~~~~~~~rdy~~l~~~~~~i  325 (393)
T COG1092         264 GLDGD--RHRFIVGDVFKWL---------RKA-------ERRGEKFDLIILDPPSFARSKKQEFSAQRDYKDLNDLALRL  325 (393)
T ss_pred             CCCcc--ceeeehhhHHHHH---------HHH-------HhcCCcccEEEECCcccccCcccchhHHHHHHHHHHHHHHH
Confidence            98643  4789999998422         111       1224599999999992            4456778899999


Q ss_pred             cCCCeEEEEe-ccCCCCHHHHHHHHh
Q 026513          185 AKPGAVVGIS-GILSEQLPHIINRYS  209 (237)
Q Consensus       185 L~~gG~liis-~~~~~~~~~~~~~~~  209 (237)
                      |+|||.++++ |...-....+.+.+.
T Consensus       326 L~pgG~l~~~s~~~~~~~~~f~~~i~  351 (393)
T COG1092         326 LAPGGTLVTSSCSRHFSSDLFLEIIA  351 (393)
T ss_pred             cCCCCEEEEEecCCccCHHHHHHHHH
Confidence            9999999997 444444444444443

>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional

Probab=99.66  E-value=2.3e-15  Score=126.27  Aligned_cols=118  Identities=18%  Similarity=0.264  Sum_probs=92.1

Q ss_pred             hhHHHHHHHHHhhccCCCeEEEEcCcchHHHHHHHH---hCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCc
Q 026513           55 ATTKLCLLLLRRLIKGGELFLDYGTGSGILGIAAIK---FGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDR  131 (237)
Q Consensus        55 ~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~la~---~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d  131 (237)
                      ....++..++...+.++.+|||+|||+|..+..+++   .+..+++|+|+|+.|++.|++++...+...   ++.++++|
T Consensus        41 ~~~~~~~~~~~~~~~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~---~v~~~~~d  117 (247)
T PRK15451         41 NIISMIGMLAERFVQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPT---PVDVIEGD  117 (247)
T ss_pred             HHHHHHHHHHHHhCCCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCC---CeEEEeCC
Confidence            334444444445567888999999999999988876   356789999999999999999998776653   47888888


Q ss_pred             cccccccccccccccccccccccCCCCCCceeEEEEeCChHHH-----HHHHHHHhHhcCCCeEEEEeccC
Q 026513          132 TFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLNPL-----LQLADHIVSYAKPGAVVGISGIL  197 (237)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~~~~-----~~~l~~~~~~L~~gG~liis~~~  197 (237)
                      +.+                     .. ...+|+|+++..++++     ..+++++.+.|+|||.+++++..
T Consensus       118 ~~~---------------------~~-~~~~D~vv~~~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~~  166 (247)
T PRK15451        118 IRD---------------------IA-IENASMVVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEKF  166 (247)
T ss_pred             hhh---------------------CC-CCCCCEEehhhHHHhCCHHHHHHHHHHHHHhcCCCCEEEEEEec
Confidence            752                     11 2469999998877654     46899999999999999998643

>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A

Probab=99.65  E-value=2.1e-15  Score=117.26  Aligned_cols=106  Identities=25%  Similarity=0.367  Sum_probs=87.4

Q ss_pred             cCCCeEEEEcCcchHHHHHHH-Hh-CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccc
Q 026513           69 KGGELFLDYGTGSGILGIAAI-KF-GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVE  146 (237)
Q Consensus        69 ~~~~~vLDlG~G~G~~~~~la-~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  146 (237)
                      +.+.+|||+|||+|.++..++ +. +..+++|+|+|+.+++.|++.++..++.+    ++++++|+.+.           
T Consensus         2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~n----i~~~~~d~~~l-----------   66 (152)
T PF13847_consen    2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDN----IEFIQGDIEDL-----------   66 (152)
T ss_dssp             TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTT----EEEEESBTTCG-----------
T ss_pred             CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccc----cceEEeehhcc-----------
Confidence            357899999999999999999 43 56789999999999999999999988875    89999998741           


Q ss_pred             ccccccccCCCCCCceeEEEEeCChHHH---HHHHHHHhHhcCCCeEEEEeccC
Q 026513          147 DLSSHKIRGISQTEKYDVVIANILLNPL---LQLADHIVSYAKPGAVVGISGIL  197 (237)
Q Consensus       147 ~~~~~~~~~~~~~~~fD~I~~n~~~~~~---~~~l~~~~~~L~~gG~liis~~~  197 (237)
                             .... ..+||+|+++.++++.   ..+++.+.+.|+++|.+++..+.
T Consensus        67 -------~~~~-~~~~D~I~~~~~l~~~~~~~~~l~~~~~~lk~~G~~i~~~~~  112 (152)
T PF13847_consen   67 -------PQEL-EEKFDIIISNGVLHHFPDPEKVLKNIIRLLKPGGILIISDPN  112 (152)
T ss_dssp             -------CGCS-STTEEEEEEESTGGGTSHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             -------cccc-CCCeeEEEEcCchhhccCHHHHHHHHHHHcCCCcEEEEEECC
Confidence                   1111 2799999999987554   46799999999999999998665

...

>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed

Probab=99.65  E-value=2.3e-15  Score=120.90  Aligned_cols=102  Identities=26%  Similarity=0.294  Sum_probs=86.2

Q ss_pred             ccCCCeEEEEcCcchHHHHHHHH-hCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccc
Q 026513           68 IKGGELFLDYGTGSGILGIAAIK-FGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVE  146 (237)
Q Consensus        68 ~~~~~~vLDlG~G~G~~~~~la~-~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  146 (237)
                      ++++.+|||+|||+|..++.+++ .+..+|+++|+++.+++.|+++++.+++++    ++++.+|..+            
T Consensus        43 l~~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~----i~~~~~d~~~------------  106 (187)
T PRK00107         43 LPGGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKN----VTVVHGRAEE------------  106 (187)
T ss_pred             cCCCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCC----EEEEeccHhh------------
Confidence            45688999999999999998886 467889999999999999999999998865    8888888752            


Q ss_pred             ccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEec
Q 026513          147 DLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISG  195 (237)
Q Consensus       147 ~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~  195 (237)
                               ....++||+|+++. ...+..++..+.++|+|||++++..
T Consensus       107 ---------~~~~~~fDlV~~~~-~~~~~~~l~~~~~~LkpGG~lv~~~  145 (187)
T PRK00107        107 ---------FGQEEKFDVVTSRA-VASLSDLVELCLPLLKPGGRFLALK  145 (187)
T ss_pred             ---------CCCCCCccEEEEcc-ccCHHHHHHHHHHhcCCCeEEEEEe
Confidence                     11256899999986 4456788999999999999999864

>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]

Probab=99.64  E-value=1.7e-15  Score=127.37  Aligned_cols=141  Identities=17%  Similarity=0.238  Sum_probs=108.2

Q ss_pred             CCCCceeEEeCcccccCCCCchhHH--------HHHHHHHh--hccCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCH
Q 026513           34 PDVQATNIILNPGLAFGSGEHATTK--------LCLLLLRR--LIKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDP  103 (237)
Q Consensus        34 ~~~~~~~~~~~~~~~f~~g~~~~~~--------~~~~~l~~--~~~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~  103 (237)
                      .....+..-++|.|.+.+...+...        .-++.+..  .++||++|||||||.|.+++++|+.-..+|+|+++|+
T Consensus        26 l~n~fy~l~Ld~~~~Yscayf~~~~~tL~eAQ~~k~~~~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~  105 (283)
T COG2230          26 LSNDFYRLFLDPSMTYSCAYFEDPDMTLEEAQRAKLDLILEKLGLKPGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSE  105 (283)
T ss_pred             cchHHHHHhcCCCCceeeEEeCCCCCChHHHHHHHHHHHHHhcCCCCCCEEEEeCCChhHHHHHHHHHcCCEEEEeeCCH
Confidence            3344455566676666665554332        22222222  2689999999999999999999987567799999999


Q ss_pred             HHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccccccccccCCCCCCceeEEEEeCChHHH-----HHHH
Q 026513          104 QAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLNPL-----LQLA  178 (237)
Q Consensus       104 ~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~~~~-----~~~l  178 (237)
                      ++.+.+++.++..|+..   ++++...|+.+                     +  .++||.|++-.+++++     ..++
T Consensus       106 ~Q~~~~~~r~~~~gl~~---~v~v~l~d~rd---------------------~--~e~fDrIvSvgmfEhvg~~~~~~ff  159 (283)
T COG2230         106 EQLAYAEKRIAARGLED---NVEVRLQDYRD---------------------F--EEPFDRIVSVGMFEHVGKENYDDFF  159 (283)
T ss_pred             HHHHHHHHHHHHcCCCc---ccEEEeccccc---------------------c--ccccceeeehhhHHHhCcccHHHHH
Confidence            99999999999999884   47777787763                     2  4569999998888665     5789


Q ss_pred             HHHhHhcCCCeEEEEeccCCCC
Q 026513          179 DHIVSYAKPGAVVGISGILSEQ  200 (237)
Q Consensus       179 ~~~~~~L~~gG~liis~~~~~~  200 (237)
                      ..+.+.|+|||.+++.++...+
T Consensus       160 ~~~~~~L~~~G~~llh~I~~~~  181 (283)
T COG2230         160 KKVYALLKPGGRMLLHSITGPD  181 (283)
T ss_pred             HHHHhhcCCCceEEEEEecCCC
Confidence            9999999999999998776544

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=99.63  E-value=1.4e-14  Score=132.74  Aligned_cols=120  Identities=21%  Similarity=0.324  Sum_probs=92.5

Q ss_pred             CCeEEEEcCcchHHHHHHHH-hCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccccc
Q 026513           71 GELFLDYGTGSGILGIAAIK-FGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDLS  149 (237)
Q Consensus        71 ~~~vLDlG~G~G~~~~~la~-~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~  149 (237)
                      +.+|||+|||+|.+++.++. .+..+|+++|+|+.+++.|++|+..+++.+   ++.++.+|+.+               
T Consensus       139 ~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~---~v~~~~~D~~~---------------  200 (506)
T PRK01544        139 FLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTD---RIQIIHSNWFE---------------  200 (506)
T ss_pred             CCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCcc---ceeeeecchhh---------------
Confidence            46899999999999998875 467789999999999999999999888764   47888898752               


Q ss_pred             cccccCCCCCCceeEEEEeCCh-----------------------------HHHHHHHHHHhHhcCCCeEEEEeccCCCC
Q 026513          150 SHKIRGISQTEKYDVVIANILL-----------------------------NPLLQLADHIVSYAKPGAVVGISGILSEQ  200 (237)
Q Consensus       150 ~~~~~~~~~~~~fD~I~~n~~~-----------------------------~~~~~~l~~~~~~L~~gG~liis~~~~~~  200 (237)
                           .. ..++||+|++|||+                             ..+..++..+.++|+|||.+++. +-..+
T Consensus       201 -----~~-~~~~fDlIvsNPPYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lE-ig~~q  273 (506)
T PRK01544        201 -----NI-EKQKFDFIVSNPPYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILE-IGFKQ  273 (506)
T ss_pred             -----hC-cCCCccEEEECCCCCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEE-ECCch
Confidence                 11 24589999999983                             12345678888999999999985 44455


Q ss_pred             HHHHHHHHhhc-cccc
Q 026513          201 LPHIINRYSEF-LEDI  215 (237)
Q Consensus       201 ~~~~~~~~~~~-~~~~  215 (237)
                      ...+...+... |..+
T Consensus       274 ~~~v~~~~~~~g~~~~  289 (506)
T PRK01544        274 EEAVTQIFLDHGYNIE  289 (506)
T ss_pred             HHHHHHHHHhcCCCce
Confidence            66666666543 4433

>TIGR00536 hemK_fam HemK family putative methylases

Probab=99.63  E-value=2.5e-14  Score=122.39  Aligned_cols=144  Identities=22%  Similarity=0.272  Sum_probs=102.6

Q ss_pred             ceeEEeCcccccCCCCchhHHHHHHHH-Hhhc-c-CCCeEEEEcCcchHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHH
Q 026513           38 ATNIILNPGLAFGSGEHATTKLCLLLL-RRLI-K-GGELFLDYGTGSGILGIAAIKF-GAAMSVGADIDPQAIKSAHQNA  113 (237)
Q Consensus        38 ~~~~~~~~~~~f~~g~~~~~~~~~~~l-~~~~-~-~~~~vLDlG~G~G~~~~~la~~-~~~~v~~vD~s~~~i~~a~~~~  113 (237)
                      ...+.++++..+   .++.+..+...+ .... . ++.+|||+|||+|.+++.++.. +..+|+|+|+|+.+++.|++|+
T Consensus        82 g~~f~v~~~vli---Pr~ete~lv~~~l~~~~~~~~~~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~  158 (284)
T TIGR00536        82 GLEFFVNEHVLI---PRPETEELVEKALASLISQNPILHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENA  158 (284)
T ss_pred             CeEEEECCCCcC---CCCccHHHHHHHHHHhhhcCCCCEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHH
Confidence            356777777544   244444444443 3322 2 2368999999999999999875 4578999999999999999999


Q ss_pred             HHcCCCCCcceEEeccCccccccccccccccccccccccccCCCCCCceeEEEEeCCh----------------------
Q 026513          114 ALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILL----------------------  171 (237)
Q Consensus       114 ~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~----------------------  171 (237)
                      ..+++.+   ++.++.+|+++.                    . +..+||+|++|||+                      
T Consensus       159 ~~~~~~~---~v~~~~~d~~~~--------------------~-~~~~fDlIvsNPPyi~~~~~~~~~~~~~~eP~~AL~  214 (284)
T TIGR00536       159 EKNQLEH---RVEFIQSNLFEP--------------------L-AGQKIDIIVSNPPYIDEEDLADLPNVVRFEPLLALV  214 (284)
T ss_pred             HHcCCCC---cEEEEECchhcc--------------------C-cCCCccEEEECCCCCCcchhhcCCcccccCcHHHhc
Confidence            9888764   488889997631                    1 13489999999973                      


Q ss_pred             ------HHHHHHHHHHhHhcCCCeEEEEeccCCCCHHHHHHHHh
Q 026513          172 ------NPLLQLADHIVSYAKPGAVVGISGILSEQLPHIINRYS  209 (237)
Q Consensus       172 ------~~~~~~l~~~~~~L~~gG~liis~~~~~~~~~~~~~~~  209 (237)
                            ..+..++..+.++|+|||++++.- ...+...+...+.
T Consensus       215 gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~-g~~q~~~~~~~~~  257 (284)
T TIGR00536       215 GGDDGLNILRQIIELAPDYLKPNGFLVCEI-GNWQQKSLKELLR  257 (284)
T ss_pred             CCCcHHHHHHHHHHHHHHhccCCCEEEEEE-CccHHHHHHHHHH
Confidence                  134567888999999999998842 2334445555554

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.

>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]

Probab=99.63  E-value=1.3e-14  Score=114.46  Aligned_cols=120  Identities=18%  Similarity=0.222  Sum_probs=104.9

Q ss_pred             hccCCCeEEEEcCcchHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccc
Q 026513           67 LIKGGELFLDYGTGSGILGIAAIKF-GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVV  145 (237)
Q Consensus        67 ~~~~~~~vLDlG~G~G~~~~~la~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  145 (237)
                      .+.+|.+++|+|||+|.+++.++.. +..+++++|-++++++..++|+...++++    +.++.++..+.          
T Consensus        31 ~~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n----~~vv~g~Ap~~----------   96 (187)
T COG2242          31 RPRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDN----LEVVEGDAPEA----------   96 (187)
T ss_pred             CCCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCc----EEEEeccchHh----------
Confidence            3678999999999999999998854 67899999999999999999999999887    99999998642          


Q ss_pred             cccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEeccCCCCHHHHHHHHhhc
Q 026513          146 EDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILSEQLPHIINRYSEF  211 (237)
Q Consensus       146 ~~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~~~~~~~~~~~~~~~~~  211 (237)
                                +....+||.||.... ..+..+++.+...|+|||++++..+..+.....+..+++.
T Consensus        97 ----------L~~~~~~daiFIGGg-~~i~~ile~~~~~l~~ggrlV~naitlE~~~~a~~~~~~~  151 (187)
T COG2242          97 ----------LPDLPSPDAIFIGGG-GNIEEILEAAWERLKPGGRLVANAITLETLAKALEALEQL  151 (187)
T ss_pred             ----------hcCCCCCCEEEECCC-CCHHHHHHHHHHHcCcCCeEEEEeecHHHHHHHHHHHHHc
Confidence                      222237999999998 7788999999999999999999999888888888888875

>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4)

Probab=99.63  E-value=1.6e-15  Score=128.63  Aligned_cols=132  Identities=18%  Similarity=0.238  Sum_probs=87.4

Q ss_pred             EeCcccccCCCCchhHHH--------HHHHHHh--hccCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHH
Q 026513           42 ILNPGLAFGSGEHATTKL--------CLLLLRR--LIKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQ  111 (237)
Q Consensus        42 ~~~~~~~f~~g~~~~~~~--------~~~~l~~--~~~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~  111 (237)
                      .+.|.|.|+++..+....        .++.+..  .+++|.+|||||||.|.+++.+++....+|+|+.+|+...+.+++
T Consensus        24 ~Ld~~m~YS~~~~~~~~~~Le~AQ~~k~~~~~~~~~l~~G~~vLDiGcGwG~~~~~~a~~~g~~v~gitlS~~Q~~~a~~  103 (273)
T PF02353_consen   24 FLDPTMKYSCAYFDEGDDTLEEAQERKLDLLCEKLGLKPGDRVLDIGCGWGGLAIYAAERYGCHVTGITLSEEQAEYARE  103 (273)
T ss_dssp             TS-TT---S----SSTT--HHHHHHHHHHHHHTTTT--TT-EEEEES-TTSHHHHHHHHHH--EEEEEES-HHHHHHHHH
T ss_pred             hcCCCCCCCCeecCCchhhHHHHHHHHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCcEEEEEECCHHHHHHHHH
Confidence            345566666655543322        2222222  267999999999999999999997634579999999999999999


Q ss_pred             HHHHcCCCCCcceEEeccCccccccccccccccccccccccccCCCCCCceeEEEEeCChHHH-----HHHHHHHhHhcC
Q 026513          112 NAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLNPL-----LQLADHIVSYAK  186 (237)
Q Consensus       112 ~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~~~~-----~~~l~~~~~~L~  186 (237)
                      .+...|+.+   ++.+...|..+                     +  ..+||.|++-.+++++     ..+++++.++|+
T Consensus       104 ~~~~~gl~~---~v~v~~~D~~~---------------------~--~~~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~Lk  157 (273)
T PF02353_consen  104 RIREAGLED---RVEVRLQDYRD---------------------L--PGKFDRIVSIEMFEHVGRKNYPAFFRKISRLLK  157 (273)
T ss_dssp             HHHCSTSSS---TEEEEES-GGG--------------------------S-SEEEEESEGGGTCGGGHHHHHHHHHHHSE
T ss_pred             HHHhcCCCC---ceEEEEeeccc---------------------c--CCCCCEEEEEechhhcChhHHHHHHHHHHHhcC
Confidence            999999876   47777888762                     2  3499999998877654     678999999999


Q ss_pred             CCeEEEEeccCCC
Q 026513          187 PGAVVGISGILSE  199 (237)
Q Consensus       187 ~gG~liis~~~~~  199 (237)
                      |||.+++..+...
T Consensus       158 pgG~~~lq~i~~~  170 (273)
T PF02353_consen  158 PGGRLVLQTITHR  170 (273)
T ss_dssp             TTEEEEEEEEEE-
T ss_pred             CCcEEEEEecccc
Confidence            9999998766433

All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....

>PRK11207 tellurite resistance protein TehB; Provisional

Probab=99.62  E-value=6.5e-15  Score=119.44  Aligned_cols=99  Identities=21%  Similarity=0.247  Sum_probs=81.0

Q ss_pred             cCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccccc
Q 026513           69 KGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDL  148 (237)
Q Consensus        69 ~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~  148 (237)
                      .++.+|||+|||+|.++..+++.+ .+|+|+|+|+.+++.+++++...++.+    +.+...|+.+              
T Consensus        29 ~~~~~vLDiGcG~G~~a~~La~~g-~~V~gvD~S~~~i~~a~~~~~~~~~~~----v~~~~~d~~~--------------   89 (197)
T PRK11207         29 VKPGKTLDLGCGNGRNSLYLAANG-FDVTAWDKNPMSIANLERIKAAENLDN----LHTAVVDLNN--------------   89 (197)
T ss_pred             CCCCcEEEECCCCCHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHHcCCCc----ceEEecChhh--------------
Confidence            356799999999999999999885 479999999999999999998887764    6677777652              


Q ss_pred             ccccccCCCCCCceeEEEEeCChHH-----HHHHHHHHhHhcCCCeEEEE
Q 026513          149 SSHKIRGISQTEKYDVVIANILLNP-----LLQLADHIVSYAKPGAVVGI  193 (237)
Q Consensus       149 ~~~~~~~~~~~~~fD~I~~n~~~~~-----~~~~l~~~~~~L~~gG~lii  193 (237)
                             ....++||+|+++..+++     ...+++.+.++|+|||++++
T Consensus        90 -------~~~~~~fD~I~~~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~~  132 (197)
T PRK11207         90 -------LTFDGEYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLI  132 (197)
T ss_pred             -------CCcCCCcCEEEEecchhhCCHHHHHHHHHHHHHHcCCCcEEEE
Confidence                   112457999999887654     35789999999999999655

>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB

Probab=99.62  E-value=6.1e-15  Score=130.64  Aligned_cols=145  Identities=16%  Similarity=0.151  Sum_probs=110.8

Q ss_pred             ceeEEeCcccccCCCCchhHHHHHHHHHhh-ccCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHc
Q 026513           38 ATNIILNPGLAFGSGEHATTKLCLLLLRRL-IKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALN  116 (237)
Q Consensus        38 ~~~~~~~~~~~f~~g~~~~~~~~~~~l~~~-~~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~  116 (237)
                      ...+.+.|+.+|++.......+...+.... ..++.+|||+|||+|.+++.++..+ .+|+|+|+++.+++.|++|++.+
T Consensus       200 g~~~~~~~~~F~Q~n~~~~~~l~~~~~~~l~~~~~~~vLDL~cG~G~~~l~la~~~-~~v~~vE~~~~av~~a~~N~~~~  278 (374)
T TIGR02085       200 DVPLVIRPQSFFQTNPKVAAQLYATARQWVREIPVTQMWDLFCGVGGFGLHCAGPD-TQLTGIEIESEAIACAQQSAQML  278 (374)
T ss_pred             CEEEEECCCccccCCHHHHHHHHHHHHHHHHhcCCCEEEEccCCccHHHHHHhhcC-CeEEEEECCHHHHHHHHHHHHHc
Confidence            457889999888877665555443332221 1356799999999999999999765 68999999999999999999999


Q ss_pred             CCCCCcceEEeccCccccccccccccccccccccccccCCCCCCceeEEEEeCChHHHH-HHHHHHhHhcCCCeEEEEec
Q 026513          117 NIGPKKMKLHLVPDRTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLNPLL-QLADHIVSYAKPGAVVGISG  195 (237)
Q Consensus       117 ~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~~~~~-~~l~~~~~~L~~gG~liis~  195 (237)
                      ++.+    +.++.+|+.+..                 ..  ...+||+|++|||+.... .+++.+. .++|++.+|+||
T Consensus       279 ~~~~----~~~~~~d~~~~~-----------------~~--~~~~~D~vi~DPPr~G~~~~~l~~l~-~~~p~~ivyvsc  334 (374)
T TIGR02085       279 GLDN----LSFAALDSAKFA-----------------TA--QMSAPELVLVNPPRRGIGKELCDYLS-QMAPKFILYSSC  334 (374)
T ss_pred             CCCc----EEEEECCHHHHH-----------------Hh--cCCCCCEEEECCCCCCCcHHHHHHHH-hcCCCeEEEEEe
Confidence            8864    888899975311                 01  124699999999987654 4445554 579999999999


Q ss_pred             cCCCCHHHHHHH
Q 026513          196 ILSEQLPHIINR  207 (237)
Q Consensus       196 ~~~~~~~~~~~~  207 (237)
                      ...+..+++...
T Consensus       335 ~p~TlaRDl~~L  346 (374)
T TIGR02085       335 NAQTMAKDIAEL  346 (374)
T ss_pred             CHHHHHHHHHHh
Confidence            988888888776

This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.

>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=99.61  E-value=1.3e-14  Score=129.87  Aligned_cols=153  Identities=23%  Similarity=0.245  Sum_probs=124.4

Q ss_pred             ceeEEeCcccccCCCCchhHHHHHHHHHhh-ccCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHc
Q 026513           38 ATNIILNPGLAFGSGEHATTKLCLLLLRRL-IKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALN  116 (237)
Q Consensus        38 ~~~~~~~~~~~f~~g~~~~~~~~~~~l~~~-~~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~  116 (237)
                      ...+.+.|+.+|+.+......+...+++.. ..++.++||+.||.|+|++.+|.. ..+|+|+|+++.+++.|++|++.|
T Consensus       260 ~~~~~~~~~sF~Q~N~~~~ekl~~~a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~-~~~V~gvEi~~~aV~~A~~NA~~n  338 (432)
T COG2265         260 GVSFQISPRSFFQVNPAVAEKLYETALEWLELAGGERVLDLYCGVGTFGLPLAKR-VKKVHGVEISPEAVEAAQENAAAN  338 (432)
T ss_pred             ceEEEeCCCCceecCHHHHHHHHHHHHHHHhhcCCCEEEEeccCCChhhhhhccc-CCEEEEEecCHHHHHHHHHHHHHc
Confidence            578899999999888777777666666553 346789999999999999999966 778999999999999999999999


Q ss_pred             CCCCCcceEEeccCccccccccccccccccccccccccCCCCCCceeEEEEeCChHHHH-HHHHHHhHhcCCCeEEEEec
Q 026513          117 NIGPKKMKLHLVPDRTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLNPLL-QLADHIVSYAKPGAVVGISG  195 (237)
Q Consensus       117 ~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~~~~~-~~l~~~~~~L~~gG~liis~  195 (237)
                      ++.|    ++|+.++..+...                 .......+|.|+.|||+.... .+++.+. .++|..++|+||
T Consensus       339 ~i~N----~~f~~~~ae~~~~-----------------~~~~~~~~d~VvvDPPR~G~~~~~lk~l~-~~~p~~IvYVSC  396 (432)
T COG2265         339 GIDN----VEFIAGDAEEFTP-----------------AWWEGYKPDVVVVDPPRAGADREVLKQLA-KLKPKRIVYVSC  396 (432)
T ss_pred             CCCc----EEEEeCCHHHHhh-----------------hccccCCCCEEEECCCCCCCCHHHHHHHH-hcCCCcEEEEeC
Confidence            9997    8888898764221                 111235899999999998887 5555554 569999999999


Q ss_pred             cCCCCHHHHHHHHhhccc
Q 026513          196 ILSEQLPHIINRYSEFLE  213 (237)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~  213 (237)
                      ...+..+++......++.
T Consensus       397 NP~TlaRDl~~L~~~gy~  414 (432)
T COG2265         397 NPATLARDLAILASTGYE  414 (432)
T ss_pred             CHHHHHHHHHHHHhCCeE
Confidence            999999998888777653

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=99.61  E-value=2.3e-14  Score=136.24  Aligned_cols=138  Identities=16%  Similarity=0.219  Sum_probs=103.0

Q ss_pred             eeEEeCcccccCCCCchhHHHHHHHHHhhccCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCC
Q 026513           39 TNIILNPGLAFGSGEHATTKLCLLLLRRLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNI  118 (237)
Q Consensus        39 ~~~~~~~~~~f~~g~~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~  118 (237)
                      ..+.++......+|.....+....++... .+|++|||+|||+|.+++.++..|+.+|+++|+|+.+++.|++|+..|++
T Consensus       508 ~~f~v~~~~~~~tG~flDqr~~R~~~~~~-~~g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~ng~  586 (702)
T PRK11783        508 AKLLVNLTDYLDTGLFLDHRPTRRMIGQM-AKGKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFALNGL  586 (702)
T ss_pred             EEEEEEcCCCCcceECHHHHHHHHHHHHh-cCCCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCC
Confidence            33444433334455555555555555544 35889999999999999999988888899999999999999999999988


Q ss_pred             CCCcceEEeccCccccccccccccccccccccccccCCCCCCceeEEEEeCCh--------------HHHHHHHHHHhHh
Q 026513          119 GPKKMKLHLVPDRTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILL--------------NPLLQLADHIVSY  184 (237)
Q Consensus       119 ~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~--------------~~~~~~l~~~~~~  184 (237)
                      ...  +++++++|+++..                 ...  .++||+|++|||.              ..+.+++..+.++
T Consensus       587 ~~~--~v~~i~~D~~~~l-----------------~~~--~~~fDlIilDPP~f~~~~~~~~~~~~~~~y~~l~~~a~~l  645 (702)
T PRK11783        587 SGR--QHRLIQADCLAWL-----------------KEA--REQFDLIFIDPPTFSNSKRMEDSFDVQRDHVALIKDAKRL  645 (702)
T ss_pred             Ccc--ceEEEEccHHHHH-----------------HHc--CCCcCEEEECCCCCCCCCccchhhhHHHHHHHHHHHHHHH
Confidence            621  4889999986311                 011  4689999999984              1235678888999


Q ss_pred             cCCCeEEEEeccCC
Q 026513          185 AKPGAVVGISGILS  198 (237)
Q Consensus       185 L~~gG~liis~~~~  198 (237)
                      |+|||.+++++...
T Consensus       646 L~~gG~l~~~~~~~  659 (702)
T PRK11783        646 LRPGGTLYFSNNKR  659 (702)
T ss_pred             cCCCCEEEEEeCCc
Confidence            99999999975543

>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional

Probab=99.61  E-value=2.8e-14  Score=115.61  Aligned_cols=150  Identities=16%  Similarity=0.086  Sum_probs=101.1

Q ss_pred             chhHHHHHHHHHhhc---cCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccC
Q 026513           54 HATTKLCLLLLRRLI---KGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPD  130 (237)
Q Consensus        54 ~~~~~~~~~~l~~~~---~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~  130 (237)
                      ++++..+.+.+...+   .++.+|||+|||+|.+++.++..++.+|+++|+++.+++.+++|++.+++.+    +.++++
T Consensus        34 Rp~~d~v~e~l~~~l~~~~~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~~~~~----v~~~~~  109 (199)
T PRK10909         34 RPTTDRVRETLFNWLAPVIVDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLATLKAGN----ARVVNT  109 (199)
T ss_pred             CcCCHHHHHHHHHHHhhhcCCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCCc----EEEEEc
Confidence            566666544443322   3578999999999999997665667899999999999999999999988764    888899


Q ss_pred             ccccccccccccccccccccccccCCCCCCceeEEEEeCCh-HH-HHHHHHHHhH--hcCCCeEEEEeccCCCCHHHHHH
Q 026513          131 RTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILL-NP-LLQLADHIVS--YAKPGAVVGISGILSEQLPHIIN  206 (237)
Q Consensus       131 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~-~~-~~~~l~~~~~--~L~~gG~liis~~~~~~~~~~~~  206 (237)
                      |+.+..                 ..  ...+||+|++|||+ .. ....++.+..  +|+|++.+|+++....+..++. 
T Consensus       110 D~~~~l-----------------~~--~~~~fDlV~~DPPy~~g~~~~~l~~l~~~~~l~~~~iv~ve~~~~~~~~~~~-  169 (199)
T PRK10909        110 NALSFL-----------------AQ--PGTPHNVVFVDPPFRKGLLEETINLLEDNGWLADEALIYVESEVENGLPTVP-  169 (199)
T ss_pred             hHHHHH-----------------hh--cCCCceEEEECCCCCCChHHHHHHHHHHCCCcCCCcEEEEEecCCCCcccCC-
Confidence            876311                 01  13479999999994 32 2344555544  4799999999876543322221 


Q ss_pred             HHhhccccceeeecCCEEEEEEEE
Q 026513          207 RYSEFLEDILVSEMDDWTCVSGKK  230 (237)
Q Consensus       207 ~~~~~~~~~~~~~~~~w~~~~~~~  230 (237)
                         +.|+.+.....|.-...++++
T Consensus       170 ---~~~~~~~~k~yG~s~~~~~~~  190 (199)
T PRK10909        170 ---ANWQLHREKVAGQVAYRLYIR  190 (199)
T ss_pred             ---CccEEEEEecCCCEEEEEEEE
Confidence               123344444455544444554

>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific

Probab=99.61  E-value=3.8e-14  Score=118.60  Aligned_cols=136  Identities=23%  Similarity=0.250  Sum_probs=97.8

Q ss_pred             hhHHHHHHHHHhh-ccCCCeEEEEcCcchHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcc
Q 026513           55 ATTKLCLLLLRRL-IKGGELFLDYGTGSGILGIAAIKF-GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRT  132 (237)
Q Consensus        55 ~~~~~~~~~l~~~-~~~~~~vLDlG~G~G~~~~~la~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~  132 (237)
                      +.+..+...+... ...+.+|||+|||+|.++..++.. +..+++|+|+++.+++.|++++..+++.+    +.++.+|+
T Consensus        71 ~~~~~l~~~~l~~~~~~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~----~~~~~~d~  146 (251)
T TIGR03534        71 PDTEELVEAALERLKKGPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLDN----VTFLQSDW  146 (251)
T ss_pred             CChHHHHHHHHHhcccCCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCe----EEEEECch
Confidence            3343444443333 234568999999999999999875 56689999999999999999999888764    88888987


Q ss_pred             ccccccccccccccccccccccCCCCCCceeEEEEeCChHH-----------------------------HHHHHHHHhH
Q 026513          133 FTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLNP-----------------------------LLQLADHIVS  183 (237)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~~~-----------------------------~~~~l~~~~~  183 (237)
                      .+                     ..+.++||+|++|||+..                             +..++..+.+
T Consensus       147 ~~---------------------~~~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~  205 (251)
T TIGR03534       147 FE---------------------PLPGGKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPR  205 (251)
T ss_pred             hc---------------------cCcCCceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHH
Confidence            63                     122568999999998532                             1256788999


Q ss_pred             hcCCCeEEEEeccCCCCHHHHHHHHhhc-cccce
Q 026513          184 YAKPGAVVGISGILSEQLPHIINRYSEF-LEDIL  216 (237)
Q Consensus       184 ~L~~gG~liis~~~~~~~~~~~~~~~~~-~~~~~  216 (237)
                      +|+|||.+++..- ..+..++.+.+... |..+.
T Consensus       206 ~L~~gG~~~~~~~-~~~~~~~~~~l~~~gf~~v~  238 (251)
T TIGR03534       206 LLKPGGWLLLEIG-YDQGEAVRALFEAAGFADVE  238 (251)
T ss_pred             hcccCCEEEEEEC-ccHHHHHHHHHHhCCCCceE
Confidence            9999999999632 23344555555543 54444

Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.

>TIGR00740 methyltransferase, putative

Probab=99.60  E-value=2.8e-14  Score=119.03  Aligned_cols=107  Identities=17%  Similarity=0.212  Sum_probs=85.9

Q ss_pred             hccCCCeEEEEcCcchHHHHHHHHh---CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccc
Q 026513           67 LIKGGELFLDYGTGSGILGIAAIKF---GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDG  143 (237)
Q Consensus        67 ~~~~~~~vLDlG~G~G~~~~~la~~---~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~  143 (237)
                      ...++.+|||+|||+|.++..+++.   +..+++|+|+|+.+++.|++++...+...   ++.++++|+.+         
T Consensus        50 ~~~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~---~v~~~~~d~~~---------  117 (239)
T TIGR00740        50 FVTPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEI---PVEILCNDIRH---------  117 (239)
T ss_pred             hCCCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCC---CeEEEECChhh---------
Confidence            4467889999999999999988864   46789999999999999999987655432   37788888763         


Q ss_pred             cccccccccccCCCCCCceeEEEEeCChHHH-----HHHHHHHhHhcCCCeEEEEeccCC
Q 026513          144 VVEDLSSHKIRGISQTEKYDVVIANILLNPL-----LQLADHIVSYAKPGAVVGISGILS  198 (237)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~fD~I~~n~~~~~~-----~~~l~~~~~~L~~gG~liis~~~~  198 (237)
                                  .. ...+|+|+++.++++.     ..+++++.+.|+|||.+++++...
T Consensus       118 ------------~~-~~~~d~v~~~~~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~~~  164 (239)
T TIGR00740       118 ------------VE-IKNASMVILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFR  164 (239)
T ss_pred             ------------CC-CCCCCEEeeecchhhCCHHHHHHHHHHHHHhcCCCeEEEEeeccc
Confidence                        11 2368999998887654     467999999999999999986543

A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.

>PLN02244 tocopherol O-methyltransferase

Probab=99.60  E-value=1.8e-14  Score=126.16  Aligned_cols=105  Identities=17%  Similarity=0.165  Sum_probs=87.5

Q ss_pred             cCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccccc
Q 026513           69 KGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDL  148 (237)
Q Consensus        69 ~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~  148 (237)
                      .++.+|||+|||+|.++..+++....+|+|+|+|+.+++.|++++...++.+   ++.++.+|..+.             
T Consensus       117 ~~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~g~~~---~v~~~~~D~~~~-------------  180 (340)
T PLN02244        117 KRPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANALAAAQGLSD---KVSFQVADALNQ-------------  180 (340)
T ss_pred             CCCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCC---ceEEEEcCcccC-------------
Confidence            4678999999999999999997645689999999999999999998887754   488888987631             


Q ss_pred             ccccccCCCCCCceeEEEEeCChHHH---HHHHHHHhHhcCCCeEEEEecc
Q 026513          149 SSHKIRGISQTEKYDVVIANILLNPL---LQLADHIVSYAKPGAVVGISGI  196 (237)
Q Consensus       149 ~~~~~~~~~~~~~fD~I~~n~~~~~~---~~~l~~~~~~L~~gG~liis~~  196 (237)
                             ..++++||+|++...++++   ..+++++.++|+|||.+++.++
T Consensus       181 -------~~~~~~FD~V~s~~~~~h~~d~~~~l~e~~rvLkpGG~lvi~~~  224 (340)
T PLN02244        181 -------PFEDGQFDLVWSMESGEHMPDKRKFVQELARVAAPGGRIIIVTW  224 (340)
T ss_pred             -------CCCCCCccEEEECCchhccCCHHHHHHHHHHHcCCCcEEEEEEe
Confidence                   2236799999998877665   4679999999999999999654

>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed

Probab=99.60  E-value=1e-14  Score=118.69  Aligned_cols=122  Identities=12%  Similarity=0.112  Sum_probs=94.7

Q ss_pred             cCCCeEEEEcCcchHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccc
Q 026513           69 KGGELFLDYGTGSGILGIAAIKF-GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVED  147 (237)
Q Consensus        69 ~~~~~vLDlG~G~G~~~~~la~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  147 (237)
                      .++.+|||+|||+|.++..+++. +..+++|+|+|+.+++.|++++..+++.+    +.++++|+.+             
T Consensus        39 ~~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~----v~~~~~d~~~-------------  101 (202)
T PRK00121         39 NDAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTN----LRLLCGDAVE-------------  101 (202)
T ss_pred             CCCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCC----EEEEecCHHH-------------
Confidence            35779999999999999998865 56789999999999999999998887754    8888998721             


Q ss_pred             cccccccCCCCCCceeEEEEeCChHH-----------HHHHHHHHhHhcCCCeEEEEeccCCCCHHHHHHHHhhc
Q 026513          148 LSSHKIRGISQTEKYDVVIANILLNP-----------LLQLADHIVSYAKPGAVVGISGILSEQLPHIINRYSEF  211 (237)
Q Consensus       148 ~~~~~~~~~~~~~~fD~I~~n~~~~~-----------~~~~l~~~~~~L~~gG~liis~~~~~~~~~~~~~~~~~  211 (237)
                          .+....++++||+|+++.+...           ...+++.+.++|+|||+++++........++...+...
T Consensus       102 ----~l~~~~~~~~~D~V~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~  172 (202)
T PRK00121        102 ----VLLDMFPDGSLDRIYLNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDWEGYAEYMLEVLSAE  172 (202)
T ss_pred             ----HHHHHcCccccceEEEECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHhC
Confidence                1111123568999999765321           35689999999999999999876666666777766653

>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species

Probab=99.60  E-value=2.9e-14  Score=121.08  Aligned_cols=153  Identities=16%  Similarity=0.198  Sum_probs=110.3

Q ss_pred             CceeEEeCcccccCCCCchhHHHHHHHHHhhccCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHc
Q 026513           37 QATNIILNPGLAFGSGEHATTKLCLLLLRRLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALN  116 (237)
Q Consensus        37 ~~~~~~~~~~~~f~~g~~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~  116 (237)
                      ....+.++....-.+|.....+....++... ..|++|||+.|-+|.+++.++..|+.+|+.+|.|..+++.|++|+..|
T Consensus        91 ~gl~f~v~l~~gqktGlFlDqR~nR~~v~~~-~~gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~a~~N~~lN  169 (286)
T PF10672_consen   91 NGLKFRVDLTDGQKTGLFLDQRENRKWVRKY-AKGKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEWAKENAALN  169 (286)
T ss_dssp             TTEEEEEESSSSSSTSS-GGGHHHHHHHHHH-CTTCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHHHHHHHHHT
T ss_pred             CCEEEEEEcCCCCcceEcHHHHhhHHHHHHH-cCCCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHc
Confidence            3466677766666788888888888888765 468999999999999999999989999999999999999999999999


Q ss_pred             CCCCCcceEEeccCccccccccccccccccccccccccCCCCCCceeEEEEeCCh---------HHHHHHHHHHhHhcCC
Q 026513          117 NIGPKKMKLHLVPDRTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILL---------NPLLQLADHIVSYAKP  187 (237)
Q Consensus       117 ~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~---------~~~~~~l~~~~~~L~~  187 (237)
                      ++...  ++.+++.|+++..                 ......++||+||++||-         ..+.+++..+.++|+|
T Consensus       170 g~~~~--~~~~~~~Dvf~~l-----------------~~~~~~~~fD~IIlDPPsF~k~~~~~~~~y~~L~~~a~~ll~~  230 (286)
T PF10672_consen  170 GLDLD--RHRFIQGDVFKFL-----------------KRLKKGGRFDLIILDPPSFAKSKFDLERDYKKLLRRAMKLLKP  230 (286)
T ss_dssp             T-CCT--CEEEEES-HHHHH-----------------HHHHHTT-EEEEEE--SSEESSTCEHHHHHHHHHHHHHHTEEE
T ss_pred             CCCcc--ceEEEecCHHHHH-----------------HHHhcCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence            98633  4778899987421                 111224689999999992         3456788999999999


Q ss_pred             CeEEEEe-ccCCCCHHHHHHHHh
Q 026513          188 GAVVGIS-GILSEQLPHIINRYS  209 (237)
Q Consensus       188 gG~liis-~~~~~~~~~~~~~~~  209 (237)
                      ||.|+++ |-..-+...+.+.+.
T Consensus       231 gG~l~~~scs~~i~~~~l~~~~~  253 (286)
T PF10672_consen  231 GGLLLTCSCSHHISPDFLLEAVA  253 (286)
T ss_dssp             EEEEEEEE--TTS-HHHHHHHHH
T ss_pred             CCEEEEEcCCcccCHHHHHHHHH
Confidence            9999875 433333444444443

The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.

>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]

Probab=99.59  E-value=1.3e-15  Score=125.29  Aligned_cols=103  Identities=22%  Similarity=0.378  Sum_probs=83.1

Q ss_pred             CCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCc--ceEEeccCcccccccccccccccccc
Q 026513           71 GELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKK--MKLHLVPDRTFTASMNERVDGVVEDL  148 (237)
Q Consensus        71 ~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~--~~v~~~~~d~~~~~~~~~~~~~~~~~  148 (237)
                      |++|||+|||+|.++..|++.| ++|+|+|+++.+++.|++....++..+..  .++.+.+.++.               
T Consensus        90 g~~ilDvGCGgGLLSepLArlg-a~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E---------------  153 (282)
T KOG1270|consen   90 GMKILDVGCGGGLLSEPLARLG-AQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVE---------------  153 (282)
T ss_pred             CceEEEeccCccccchhhHhhC-CeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchh---------------
Confidence            4789999999999999999997 66999999999999999997666654422  13444444443               


Q ss_pred             ccccccCCCCCCceeEEEEeCChHHHH---HHHHHHhHhcCCCeEEEEeccC
Q 026513          149 SSHKIRGISQTEKYDVVIANILLNPLL---QLADHIVSYAKPGAVVGISGIL  197 (237)
Q Consensus       149 ~~~~~~~~~~~~~fD~I~~n~~~~~~~---~~l~~~~~~L~~gG~liis~~~  197 (237)
                            ..  .++||.|+|..+++|+.   .+++.+.++|+|||.++++++-
T Consensus       154 ------~~--~~~fDaVvcsevleHV~dp~~~l~~l~~~lkP~G~lfittin  197 (282)
T KOG1270|consen  154 ------GL--TGKFDAVVCSEVLEHVKDPQEFLNCLSALLKPNGRLFITTIN  197 (282)
T ss_pred             ------hc--ccccceeeeHHHHHHHhCHHHHHHHHHHHhCCCCceEeeehh
Confidence                  11  45799999999998884   6899999999999999998664

>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit

Probab=99.59  E-value=3.1e-14  Score=106.11  Aligned_cols=106  Identities=20%  Similarity=0.307  Sum_probs=85.9

Q ss_pred             ccCCCeEEEEcCcchHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccc
Q 026513           68 IKGGELFLDYGTGSGILGIAAIKF-GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVE  146 (237)
Q Consensus        68 ~~~~~~vLDlG~G~G~~~~~la~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  146 (237)
                      +.++.+|||+|||+|.++..+++. +..+|+++|+++.+++.+++++...+..+    +.++.+|....           
T Consensus        17 ~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~----~~~~~~~~~~~-----------   81 (124)
T TIGR02469        17 LRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSN----IVIVEGDAPEA-----------   81 (124)
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCc----eEEEecccccc-----------
Confidence            346789999999999999999875 56789999999999999999998887654    67777775410           


Q ss_pred             ccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEecc
Q 026513          147 DLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGI  196 (237)
Q Consensus       147 ~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~~  196 (237)
                            . . ....+||+|++......+.++++.+.+.|+|||.+++..+
T Consensus        82 ------~-~-~~~~~~D~v~~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~  123 (124)
T TIGR02469        82 ------L-E-DSLPEPDRVFIGGSGGLLQEILEAIWRRLRPGGRIVLNAI  123 (124)
T ss_pred             ------C-h-hhcCCCCEEEECCcchhHHHHHHHHHHHcCCCCEEEEEec
Confidence                  0 0 1135899999988777778899999999999999998743

This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.

>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.59  E-value=7.1e-15  Score=104.13  Aligned_cols=92  Identities=26%  Similarity=0.338  Sum_probs=73.9

Q ss_pred             EEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccccccccccc
Q 026513           75 LDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDLSSHKIR  154 (237)
Q Consensus        75 LDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~  154 (237)
                      ||+|||+|..+..+++.+..+++++|+++.+++.++++....+       +.+..+|..+.                   
T Consensus         1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~~~~~-------~~~~~~d~~~l-------------------   54 (95)
T PF08241_consen    1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRLKNEG-------VSFRQGDAEDL-------------------   54 (95)
T ss_dssp             EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHTTTST-------EEEEESBTTSS-------------------
T ss_pred             CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhcccccC-------chheeehHHhC-------------------
Confidence            8999999999999998888889999999999999999876543       44777877632                   


Q ss_pred             CCCCCCceeEEEEeCChHHH---HHHHHHHhHhcCCCeEEEE
Q 026513          155 GISQTEKYDVVIANILLNPL---LQLADHIVSYAKPGAVVGI  193 (237)
Q Consensus       155 ~~~~~~~fD~I~~n~~~~~~---~~~l~~~~~~L~~gG~lii  193 (237)
                       ..++++||+|+++..+++.   ..+++++.++|||||++++
T Consensus        55 -~~~~~sfD~v~~~~~~~~~~~~~~~l~e~~rvLk~gG~l~~   95 (95)
T PF08241_consen   55 -PFPDNSFDVVFSNSVLHHLEDPEAALREIYRVLKPGGRLVI   95 (95)
T ss_dssp             -SS-TT-EEEEEEESHGGGSSHHHHHHHHHHHHEEEEEEEEE
T ss_pred             -ccccccccccccccceeeccCHHHHHHHHHHHcCcCeEEeC
Confidence             2347899999999887654   5779999999999999986

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....

>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase

Probab=99.59  E-value=4e-14  Score=117.30  Aligned_cols=108  Identities=18%  Similarity=0.208  Sum_probs=86.5

Q ss_pred             ccCCCeEEEEcCcchHHHHHHHHh--CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccc
Q 026513           68 IKGGELFLDYGTGSGILGIAAIKF--GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVV  145 (237)
Q Consensus        68 ~~~~~~vLDlG~G~G~~~~~la~~--~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  145 (237)
                      ++++.+|||+|||+|.++..+++.  +..+|+|+|+++.+++.|++++...+..+    +.++.+|..+.          
T Consensus        43 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~----v~~~~~d~~~~----------  108 (231)
T TIGR02752        43 VQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHN----VELVHGNAMEL----------  108 (231)
T ss_pred             CCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCc----eEEEEechhcC----------
Confidence            457889999999999999998865  34689999999999999999988777653    78888887531          


Q ss_pred             cccccccccCCCCCCceeEEEEeCChHH---HHHHHHHHhHhcCCCeEEEEeccCCC
Q 026513          146 EDLSSHKIRGISQTEKYDVVIANILLNP---LLQLADHIVSYAKPGAVVGISGILSE  199 (237)
Q Consensus       146 ~~~~~~~~~~~~~~~~fD~I~~n~~~~~---~~~~l~~~~~~L~~gG~liis~~~~~  199 (237)
                                ..++++||+|+++..+++   ..++++.+.+.|+|||.+++......
T Consensus       109 ----------~~~~~~fD~V~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~  155 (231)
T TIGR02752       109 ----------PFDDNSFDYVTIGFGLRNVPDYMQVLREMYRVVKPGGKVVCLETSQP  155 (231)
T ss_pred             ----------CCCCCCccEEEEecccccCCCHHHHHHHHHHHcCcCeEEEEEECCCC
Confidence                      123578999999877654   35678999999999999998755433

MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.

>PRK14968 putative methyltransferase; Provisional

Probab=99.58  E-value=1.6e-13  Score=109.82  Aligned_cols=128  Identities=29%  Similarity=0.402  Sum_probs=93.6

Q ss_pred             HHHHHHHHHhhccCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccc
Q 026513           57 TKLCLLLLRRLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTAS  136 (237)
Q Consensus        57 ~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~  136 (237)
                      +..+...+..  .++.+|||+|||+|.++..++.. ..+++++|+|+.+++.+++++..+++.+.  .+.++.+|..+  
T Consensus        12 ~~~l~~~~~~--~~~~~vLd~G~G~G~~~~~l~~~-~~~v~~~D~s~~~~~~a~~~~~~~~~~~~--~~~~~~~d~~~--   84 (188)
T PRK14968         12 SFLLAENAVD--KKGDRVLEVGTGSGIVAIVAAKN-GKKVVGVDINPYAVECAKCNAKLNNIRNN--GVEVIRSDLFE--   84 (188)
T ss_pred             HHHHHHhhhc--cCCCEEEEEccccCHHHHHHHhh-cceEEEEECCHHHHHHHHHHHHHcCCCCc--ceEEEeccccc--
Confidence            3444444432  56789999999999999999887 57799999999999999999988877541  15666777652  


Q ss_pred             ccccccccccccccccccCCCCCCceeEEEEeCChHH------------------------HHHHHHHHhHhcCCCeEEE
Q 026513          137 MNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLNP------------------------LLQLADHIVSYAKPGAVVG  192 (237)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~~~------------------------~~~~l~~~~~~L~~gG~li  192 (237)
                                        .+ ...+||+|++|+|+..                        +..+++.+.++|+|||.++
T Consensus        85 ------------------~~-~~~~~d~vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~  145 (188)
T PRK14968         85 ------------------PF-RGDKFDVILFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRIL  145 (188)
T ss_pred             ------------------cc-cccCceEEEECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEE
Confidence                              11 2348999999987532                        3457899999999999988


Q ss_pred             EeccCCCCHHHHHHHHhh
Q 026513          193 ISGILSEQLPHIINRYSE  210 (237)
Q Consensus       193 is~~~~~~~~~~~~~~~~  210 (237)
                      +.........++...+..
T Consensus       146 ~~~~~~~~~~~l~~~~~~  163 (188)
T PRK14968        146 LLQSSLTGEDEVLEYLEK  163 (188)
T ss_pred             EEEcccCCHHHHHHHHHH
Confidence            753333334556666554

>TIGR00477 tehB tellurite resistance protein TehB

Probab=99.58  E-value=1.7e-14  Score=116.80  Aligned_cols=98  Identities=19%  Similarity=0.203  Sum_probs=77.1

Q ss_pred             CCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccccc
Q 026513           70 GGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDLS  149 (237)
Q Consensus        70 ~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~  149 (237)
                      ++.+|||+|||+|.++..+++.+ .+|+|+|+|+.+++.+++++..+++.     +.+...|...               
T Consensus        30 ~~~~vLDiGcG~G~~a~~la~~g-~~V~~iD~s~~~l~~a~~~~~~~~~~-----v~~~~~d~~~---------------   88 (195)
T TIGR00477        30 APCKTLDLGCGQGRNSLYLSLAG-YDVRAWDHNPASIASVLDMKARENLP-----LRTDAYDINA---------------   88 (195)
T ss_pred             CCCcEEEeCCCCCHHHHHHHHCC-CeEEEEECCHHHHHHHHHHHHHhCCC-----ceeEeccchh---------------
Confidence            45699999999999999999885 47999999999999999988877764     4444555431               


Q ss_pred             cccccCCCCCCceeEEEEeCChHH-----HHHHHHHHhHhcCCCeEEEEe
Q 026513          150 SHKIRGISQTEKYDVVIANILLNP-----LLQLADHIVSYAKPGAVVGIS  194 (237)
Q Consensus       150 ~~~~~~~~~~~~fD~I~~n~~~~~-----~~~~l~~~~~~L~~gG~liis  194 (237)
                            .....+||+|+++.++++     ...+++.+.++|+|||++++.
T Consensus        89 ------~~~~~~fD~I~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lli~  132 (195)
T TIGR00477        89 ------AALNEDYDFIFSTVVFMFLQAGRVPEIIANMQAHTRPGGYNLIV  132 (195)
T ss_pred             ------ccccCCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence                  111357999999887654     357899999999999996553

Part of a tellurite-reducing operon tehA and tehB

>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional

Probab=99.58  E-value=2.6e-14  Score=120.95  Aligned_cols=119  Identities=17%  Similarity=0.146  Sum_probs=88.1

Q ss_pred             CCCchhHHHHHHHHHhhccCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccC
Q 026513           51 SGEHATTKLCLLLLRRLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPD  130 (237)
Q Consensus        51 ~g~~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~  130 (237)
                      +|..+.+..++..+  .+.++.+|||+|||+|..+..++.....+|+|+|+|+.+++.|+++....  .    ++.+..+
T Consensus        35 ~gg~~~~~~~l~~l--~l~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~~~--~----~i~~~~~  106 (263)
T PTZ00098         35 SGGIEATTKILSDI--ELNENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSDK--N----KIEFEAN  106 (263)
T ss_pred             CCchHHHHHHHHhC--CCCCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcCcC--C----ceEEEEC
Confidence            33344444444443  24678899999999999999887654568999999999999999876531  1    3777788


Q ss_pred             ccccccccccccccccccccccccCCCCCCceeEEEEeCChH-----HHHHHHHHHhHhcCCCeEEEEeccC
Q 026513          131 RTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLN-----PLLQLADHIVSYAKPGAVVGISGIL  197 (237)
Q Consensus       131 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~~-----~~~~~l~~~~~~L~~gG~liis~~~  197 (237)
                      |+.+                    ...++++||+|++...+.     ....+++++.++|+|||.++++++.
T Consensus       107 D~~~--------------------~~~~~~~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~  158 (263)
T PTZ00098        107 DILK--------------------KDFPENTFDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDYC  158 (263)
T ss_pred             Cccc--------------------CCCCCCCeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEec
Confidence            8752                    122357899999966543     3356899999999999999998663

>PLN02233 ubiquinone biosynthesis methyltransferase

Probab=99.58  E-value=4.5e-14  Score=119.38  Aligned_cols=109  Identities=19%  Similarity=0.238  Sum_probs=85.1

Q ss_pred             ccCCCeEEEEcCcchHHHHHHHHh-C-CCeEEEEeCCHHHHHHHHHHHHH---cCCCCCcceEEeccCcccccccccccc
Q 026513           68 IKGGELFLDYGTGSGILGIAAIKF-G-AAMSVGADIDPQAIKSAHQNAAL---NNIGPKKMKLHLVPDRTFTASMNERVD  142 (237)
Q Consensus        68 ~~~~~~vLDlG~G~G~~~~~la~~-~-~~~v~~vD~s~~~i~~a~~~~~~---~~~~~~~~~v~~~~~d~~~~~~~~~~~  142 (237)
                      +.++.+|||+|||+|.++..+++. + ..+|+|+|+|+.|++.|+++...   ....    ++.++++|..+.       
T Consensus        71 ~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~----~i~~~~~d~~~l-------  139 (261)
T PLN02233         71 AKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYK----NIEWIEGDATDL-------  139 (261)
T ss_pred             CCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCC----CeEEEEcccccC-------
Confidence            357889999999999999988865 3 46899999999999999877542   1222    377888887631       


Q ss_pred             ccccccccccccCCCCCCceeEEEEeCChHHH---HHHHHHHhHhcCCCeEEEEeccCCCC
Q 026513          143 GVVEDLSSHKIRGISQTEKYDVVIANILLNPL---LQLADHIVSYAKPGAVVGISGILSEQ  200 (237)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~fD~I~~n~~~~~~---~~~l~~~~~~L~~gG~liis~~~~~~  200 (237)
                                   ..++++||+|+++..+++.   ..+++++.+.|||||.+++.++...+
T Consensus       140 -------------p~~~~sfD~V~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~d~~~~~  187 (261)
T PLN02233        140 -------------PFDDCYFDAITMGYGLRNVVDRLKAMQEMYRVLKPGSRVSILDFNKST  187 (261)
T ss_pred             -------------CCCCCCEeEEEEecccccCCCHHHHHHHHHHHcCcCcEEEEEECCCCC
Confidence                         2236789999998877654   56799999999999999998775443

>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.57  E-value=2.8e-14  Score=120.14  Aligned_cols=104  Identities=16%  Similarity=0.247  Sum_probs=85.3

Q ss_pred             ccCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccc
Q 026513           68 IKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVED  147 (237)
Q Consensus        68 ~~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  147 (237)
                      ..++.+|||+|||+|.++..++..+ .+|+++|+|+.+++.|++++...++..   ++.++++|..+.            
T Consensus        42 ~~~~~~vLDiGcG~G~~a~~la~~g-~~v~~vD~s~~~l~~a~~~~~~~g~~~---~v~~~~~d~~~l------------  105 (255)
T PRK11036         42 PPRPLRVLDAGGGEGQTAIKLAELG-HQVILCDLSAEMIQRAKQAAEAKGVSD---NMQFIHCAAQDI------------  105 (255)
T ss_pred             CCCCCEEEEeCCCchHHHHHHHHcC-CEEEEEECCHHHHHHHHHHHHhcCCcc---ceEEEEcCHHHH------------
Confidence            3456799999999999999999885 579999999999999999998887653   477888887531            


Q ss_pred             cccccccCCCCCCceeEEEEeCChHHH---HHHHHHHhHhcCCCeEEEEe
Q 026513          148 LSSHKIRGISQTEKYDVVIANILLNPL---LQLADHIVSYAKPGAVVGIS  194 (237)
Q Consensus       148 ~~~~~~~~~~~~~~fD~I~~n~~~~~~---~~~l~~~~~~L~~gG~liis  194 (237)
                            .. ...++||+|+++.+++++   ..++..+.++|+|||++++.
T Consensus       106 ------~~-~~~~~fD~V~~~~vl~~~~~~~~~l~~~~~~LkpgG~l~i~  148 (255)
T PRK11036        106 ------AQ-HLETPVDLILFHAVLEWVADPKSVLQTLWSVLRPGGALSLM  148 (255)
T ss_pred             ------hh-hcCCCCCEEEehhHHHhhCCHHHHHHHHHHHcCCCeEEEEE
Confidence                  11 125689999999888765   46789999999999999875

>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA

Probab=99.57  E-value=2.9e-14  Score=128.77  Aligned_cols=153  Identities=22%  Similarity=0.195  Sum_probs=111.7

Q ss_pred             ceeEEeCcccccCCCCchhHHHHHHHHHhh-ccCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHc
Q 026513           38 ATNIILNPGLAFGSGEHATTKLCLLLLRRL-IKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALN  116 (237)
Q Consensus        38 ~~~~~~~~~~~f~~g~~~~~~~~~~~l~~~-~~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~  116 (237)
                      ...+.+.|+.+|+.+......+....+... +.++.+|||+|||+|.+++.+++. ..+|+|+|+++.+++.|++|+..+
T Consensus       259 ~~~~~~~~~~F~Q~N~~~~~~l~~~~~~~l~~~~~~~vLDl~cG~G~~sl~la~~-~~~V~~vE~~~~av~~a~~n~~~~  337 (431)
T TIGR00479       259 DLSFSLSARDFFQVNSGQNEKLVDRALEALELQGEELVVDAYCGVGTFTLPLAKQ-AKSVVGIEVVPESVEKAQQNAELN  337 (431)
T ss_pred             CEEEEECCCceeecCHHHHHHHHHHHHHHhccCCCCEEEEcCCCcCHHHHHHHHh-CCEEEEEEcCHHHHHHHHHHHHHh
Confidence            457788888888766554444443333222 346689999999999999999977 467999999999999999999999


Q ss_pred             CCCCCcceEEeccCccccccccccccccccccccccccCC-CCCCceeEEEEeCChHH-HHHHHHHHhHhcCCCeEEEEe
Q 026513          117 NIGPKKMKLHLVPDRTFTASMNERVDGVVEDLSSHKIRGI-SQTEKYDVVIANILLNP-LLQLADHIVSYAKPGAVVGIS  194 (237)
Q Consensus       117 ~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~fD~I~~n~~~~~-~~~~l~~~~~~L~~gG~liis  194 (237)
                      ++.+    ++++.+|+.+..                 ... ..+.+||+|++|||... ...+++.+. .++|++.+|+|
T Consensus       338 ~~~n----v~~~~~d~~~~l-----------------~~~~~~~~~~D~vi~dPPr~G~~~~~l~~l~-~l~~~~ivyvs  395 (431)
T TIGR00479       338 GIAN----VEFLAGTLETVL-----------------PKQPWAGQIPDVLLLDPPRKGCAAEVLRTII-ELKPERIVYVS  395 (431)
T ss_pred             CCCc----eEEEeCCHHHHH-----------------HHHHhcCCCCCEEEECcCCCCCCHHHHHHHH-hcCCCEEEEEc
Confidence            8875    889999975310                 011 11357999999999765 355666555 47999999999


Q ss_pred             ccCCCCHHHHHHHHhhccc
Q 026513          195 GILSEQLPHIINRYSEFLE  213 (237)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~  213 (237)
                      |...+...++.......|.
T Consensus       396 c~p~tlard~~~l~~~gy~  414 (431)
T TIGR00479       396 CNPATLARDLEFLCKEGYG  414 (431)
T ss_pred             CCHHHHHHHHHHHHHCCee
Confidence            9876666666665554443

This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.

>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional

Probab=99.57  E-value=7.7e-14  Score=113.20  Aligned_cols=121  Identities=20%  Similarity=0.258  Sum_probs=94.9

Q ss_pred             ccCCCeEEEEcCcchHHHHHHHHh--CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccc
Q 026513           68 IKGGELFLDYGTGSGILGIAAIKF--GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVV  145 (237)
Q Consensus        68 ~~~~~~vLDlG~G~G~~~~~la~~--~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  145 (237)
                      +.++.+|||+|||+|.+++.+++.  +..+|+++|+++.+++.++++++.+++..   ++.++.+|..+..         
T Consensus        38 ~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~---~v~~~~~d~~~~l---------  105 (198)
T PRK00377         38 LRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLN---NIVLIKGEAPEIL---------  105 (198)
T ss_pred             CCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCC---CeEEEEechhhhH---------
Confidence            567889999999999999998864  34689999999999999999999888533   3777788765210         


Q ss_pred             cccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEeccCCCCHHHHHHHHhh
Q 026513          146 EDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILSEQLPHIINRYSE  210 (237)
Q Consensus       146 ~~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~~~~~~~~~~~~~~~~  210 (237)
                              ..  ..++||.|+++.....+..+++.+.+.|+|||.+++.....+...++...+++
T Consensus       106 --------~~--~~~~~D~V~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~  160 (198)
T PRK00377        106 --------FT--INEKFDRIFIGGGSEKLKEIISASWEIIKKGGRIVIDAILLETVNNALSALEN  160 (198)
T ss_pred             --------hh--cCCCCCEEEECCCcccHHHHHHHHHHHcCCCcEEEEEeecHHHHHHHHHHHHH
Confidence                    01  13589999997766667788999999999999999866555566677766654

>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase

Probab=99.57  E-value=4.6e-14  Score=115.93  Aligned_cols=100  Identities=15%  Similarity=0.223  Sum_probs=81.4

Q ss_pred             ccCCCeEEEEcCcchHHHHHHHHhC--CCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccc
Q 026513           68 IKGGELFLDYGTGSGILGIAAIKFG--AAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVV  145 (237)
Q Consensus        68 ~~~~~~vLDlG~G~G~~~~~la~~~--~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  145 (237)
                      +.++.+|||+|||+|.++..+++..  ..+|+++|+++.+++.|++++...++.+    +.++.+|..+.          
T Consensus        75 ~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~----v~~~~~d~~~~----------  140 (215)
T TIGR00080        75 LKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDN----VIVIVGDGTQG----------  140 (215)
T ss_pred             CCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCC----eEEEECCcccC----------
Confidence            4678999999999999999998763  3469999999999999999999988865    88888887531          


Q ss_pred             cccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEe
Q 026513          146 EDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGIS  194 (237)
Q Consensus       146 ~~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis  194 (237)
                                .....+||+|+++.+...   +.+.+.+.|+|||++++.
T Consensus       141 ----------~~~~~~fD~Ii~~~~~~~---~~~~~~~~L~~gG~lv~~  176 (215)
T TIGR00080       141 ----------WEPLAPYDRIYVTAAGPK---IPEALIDQLKEGGILVMP  176 (215)
T ss_pred             ----------CcccCCCCEEEEcCCccc---ccHHHHHhcCcCcEEEEE
Confidence                      122358999999886543   345678899999999985

Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.

>PLN02396 hexaprenyldihydroxybenzoate methyltransferase

Probab=99.56  E-value=2.1e-14  Score=124.33  Aligned_cols=103  Identities=19%  Similarity=0.356  Sum_probs=83.4

Q ss_pred             CCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccccc
Q 026513           70 GGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDLS  149 (237)
Q Consensus        70 ~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~  149 (237)
                      ++.+|||+|||+|.++..+++.+ .+|+|+|+++.+++.|++++...+...   .+.++++|+.+.              
T Consensus       131 ~g~~ILDIGCG~G~~s~~La~~g-~~V~GID~s~~~i~~Ar~~~~~~~~~~---~i~~~~~dae~l--------------  192 (322)
T PLN02396        131 EGLKFIDIGCGGGLLSEPLARMG-ATVTGVDAVDKNVKIARLHADMDPVTS---TIEYLCTTAEKL--------------  192 (322)
T ss_pred             CCCEEEEeeCCCCHHHHHHHHcC-CEEEEEeCCHHHHHHHHHHHHhcCccc---ceeEEecCHHHh--------------
Confidence            46799999999999999998764 579999999999999998877655432   377888876421              


Q ss_pred             cccccCCCCCCceeEEEEeCChHHH---HHHHHHHhHhcCCCeEEEEecc
Q 026513          150 SHKIRGISQTEKYDVVIANILLNPL---LQLADHIVSYAKPGAVVGISGI  196 (237)
Q Consensus       150 ~~~~~~~~~~~~fD~I~~n~~~~~~---~~~l~~~~~~L~~gG~liis~~  196 (237)
                            ...+++||+|++..+++++   ..+++.+.++|+|||.++++.+
T Consensus       193 ------~~~~~~FD~Vi~~~vLeHv~d~~~~L~~l~r~LkPGG~liist~  236 (322)
T PLN02396        193 ------ADEGRKFDAVLSLEVIEHVANPAEFCKSLSALTIPNGATVLSTI  236 (322)
T ss_pred             ------hhccCCCCEEEEhhHHHhcCCHHHHHHHHHHHcCCCcEEEEEEC
Confidence                  1225789999998888776   4689999999999999999754

>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.55  E-value=1.2e-13  Score=112.73  Aligned_cols=101  Identities=19%  Similarity=0.202  Sum_probs=81.4

Q ss_pred             ccCCCeEEEEcCcchHHHHHHHHh-C-CCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccc
Q 026513           68 IKGGELFLDYGTGSGILGIAAIKF-G-AAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVV  145 (237)
Q Consensus        68 ~~~~~~vLDlG~G~G~~~~~la~~-~-~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  145 (237)
                      +.++.+|||+|||+|.++..+++. + ..+|+++|+++.+++.|++++..+++.+   +++++.+|..+           
T Consensus        70 ~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~---~v~~~~~d~~~-----------  135 (205)
T PRK13944         70 PRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWG---VVEVYHGDGKR-----------  135 (205)
T ss_pred             CCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCC---cEEEEECCccc-----------
Confidence            457889999999999999888864 2 4689999999999999999999888754   47788888753           


Q ss_pred             cccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEe
Q 026513          146 EDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGIS  194 (237)
Q Consensus       146 ~~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis  194 (237)
                               .+....+||+|+++.....+   .+.+.+.|+|||++++.
T Consensus       136 ---------~~~~~~~fD~Ii~~~~~~~~---~~~l~~~L~~gG~lvi~  172 (205)
T PRK13944        136 ---------GLEKHAPFDAIIVTAAASTI---PSALVRQLKDGGVLVIP  172 (205)
T ss_pred             ---------CCccCCCccEEEEccCcchh---hHHHHHhcCcCcEEEEE
Confidence                     12224689999999876544   35688899999999885

>KOG1271 consensus Methyltransferases [General function prediction only]

Probab=99.55  E-value=5e-14  Score=109.90  Aligned_cols=141  Identities=21%  Similarity=0.322  Sum_probs=102.3

Q ss_pred             cccCCCCchhHHHHHHHHHhhc-----cCCC-eEEEEcCcchHHHHHHHHhCCCe-EEEEeCCHHHHHHHHHHHHHcCCC
Q 026513           47 LAFGSGEHATTKLCLLLLRRLI-----KGGE-LFLDYGTGSGILGIAAIKFGAAM-SVGADIDPQAIKSAHQNAALNNIG  119 (237)
Q Consensus        47 ~~f~~g~~~~~~~~~~~l~~~~-----~~~~-~vLDlG~G~G~~~~~la~~~~~~-v~~vD~s~~~i~~a~~~~~~~~~~  119 (237)
                      ..|+   ...+..+..++...+     .+.. +|||+|||+|.+...|++.++.. .+|+|+|+.+++.|+..++.++.+
T Consensus        41 vWFg---~~ae~riv~wl~d~~~~~rv~~~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~  117 (227)
T KOG1271|consen   41 VWFG---EDAEERIVDWLKDLIVISRVSKQADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFS  117 (227)
T ss_pred             eecC---CcHHHHHHHHHHhhhhhhhhcccccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCCC
Confidence            5666   344555666665432     2333 99999999999999999887654 999999999999999999999998


Q ss_pred             CCcceEEeccCccccccccccccccccccccccccCCCCCCceeEEEE---------eCC--hHHHHHHHHHHhHhcCCC
Q 026513          120 PKKMKLHLVPDRTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIA---------NIL--LNPLLQLADHIVSYAKPG  188 (237)
Q Consensus       120 ~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~---------n~~--~~~~~~~l~~~~~~L~~g  188 (237)
                      +   .+.|.+.|+.++..                    ..++||+|.-         .|.  -....-++..+.++|+||
T Consensus       118 n---~I~f~q~DI~~~~~--------------------~~~qfdlvlDKGT~DAisLs~d~~~~r~~~Y~d~v~~ll~~~  174 (227)
T KOG1271|consen  118 N---EIRFQQLDITDPDF--------------------LSGQFDLVLDKGTLDAISLSPDGPVGRLVVYLDSVEKLLSPG  174 (227)
T ss_pred             c---ceeEEEeeccCCcc--------------------cccceeEEeecCceeeeecCCCCcccceeeehhhHhhccCCC
Confidence            7   58898999875321                    1345666643         221  111234578889999999


Q ss_pred             eEEEE-eccCCCCHHHHHHHHhhc-cccc
Q 026513          189 AVVGI-SGILSEQLPHIINRYSEF-LEDI  215 (237)
Q Consensus       189 G~lii-s~~~~~~~~~~~~~~~~~-~~~~  215 (237)
                      |+++| ||.++.  .++...+..+ |...
T Consensus       175 gifvItSCN~T~--dELv~~f~~~~f~~~  201 (227)
T KOG1271|consen  175 GIFVITSCNFTK--DELVEEFENFNFEYL  201 (227)
T ss_pred             cEEEEEecCccH--HHHHHHHhcCCeEEE
Confidence            99988 587776  7888888765 5443

>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated

Probab=99.55  E-value=8.9e-14  Score=122.70  Aligned_cols=160  Identities=9%  Similarity=0.007  Sum_probs=109.5

Q ss_pred             eeEEeCcccccCCCCchhHHHHHHHHHhhccCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCC
Q 026513           39 TNIILNPGLAFGSGEHATTKLCLLLLRRLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNI  118 (237)
Q Consensus        39 ~~~~~~~~~~f~~g~~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~  118 (237)
                      ..+.+.|+.+|+.+......++..+.......+.++||++||+|.+++.+++. +.+|+|+|+++.+++.|++|+..+++
T Consensus       175 ~~~~~~~~sF~Q~N~~~~e~l~~~v~~~~~~~~~~vLDl~~G~G~~sl~la~~-~~~v~~vE~~~~ai~~a~~N~~~~~~  253 (362)
T PRK05031        175 FIYRQVENSFTQPNAAVNEKMLEWALDATKGSKGDLLELYCGNGNFTLALARN-FRRVLATEISKPSVAAAQYNIAANGI  253 (362)
T ss_pred             EEEEeCCCCeeccCHHHHHHHHHHHHHHhhcCCCeEEEEeccccHHHHHHHhh-CCEEEEEECCHHHHHHHHHHHHHhCC
Confidence            56888888888876655555444444322222357999999999999988876 56899999999999999999999998


Q ss_pred             CCCcceEEeccCccccccccccccccccccccccccCCC----CCCceeEEEEeCChHHH-HHHHHHHhHhcCCCeEEEE
Q 026513          119 GPKKMKLHLVPDRTFTASMNERVDGVVEDLSSHKIRGIS----QTEKYDVVIANILLNPL-LQLADHIVSYAKPGAVVGI  193 (237)
Q Consensus       119 ~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~fD~I~~n~~~~~~-~~~l~~~~~~L~~gG~lii  193 (237)
                      .+    +.++.+|+.+..     ..+...   .......    ...+||+|+.|||+..+ .++++.+.   ++++.+|+
T Consensus       254 ~~----v~~~~~d~~~~l-----~~~~~~---~~~~~~~~~~~~~~~~D~v~lDPPR~G~~~~~l~~l~---~~~~ivyv  318 (362)
T PRK05031        254 DN----VQIIRMSAEEFT-----QAMNGV---REFNRLKGIDLKSYNFSTIFVDPPRAGLDDETLKLVQ---AYERILYI  318 (362)
T ss_pred             Cc----EEEEECCHHHHH-----HHHhhc---ccccccccccccCCCCCEEEECCCCCCCcHHHHHHHH---ccCCEEEE
Confidence            75    889999986421     000000   0000000    02369999999998654 34445554   37999999


Q ss_pred             eccCCCCHHHHHHHHhhccccc
Q 026513          194 SGILSEQLPHIINRYSEFLEDI  215 (237)
Q Consensus       194 s~~~~~~~~~~~~~~~~~~~~~  215 (237)
                      ||...+-.+++..... .|...
T Consensus       319 SC~p~tlarDl~~L~~-gY~l~  339 (362)
T PRK05031        319 SCNPETLCENLETLSQ-THKVE  339 (362)
T ss_pred             EeCHHHHHHHHHHHcC-CcEEE
Confidence            9998777777776543 44433

>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.55  E-value=4.2e-13  Score=113.99  Aligned_cols=148  Identities=20%  Similarity=0.247  Sum_probs=100.4

Q ss_pred             eEEeCcccccCCCCchhHHHHHHHHHhh--ccCCCeEEEEcCcchHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHHc
Q 026513           40 NIILNPGLAFGSGEHATTKLCLLLLRRL--IKGGELFLDYGTGSGILGIAAIKF-GAAMSVGADIDPQAIKSAHQNAALN  116 (237)
Q Consensus        40 ~~~~~~~~~f~~g~~~~~~~~~~~l~~~--~~~~~~vLDlG~G~G~~~~~la~~-~~~~v~~vD~s~~~i~~a~~~~~~~  116 (237)
                      .+.++++...   ..+.+..+.+.+...  ..++.+|||+|||+|.++..++.. +..+++|+|+|+.+++.|++++...
T Consensus        79 ~~~~~~~~li---pr~~te~l~~~~~~~~~~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~  155 (275)
T PRK09328         79 DFKVSPGVLI---PRPETEELVEWALEALLLKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHG  155 (275)
T ss_pred             EEEECCCcee---CCCCcHHHHHHHHHhccccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhC
Confidence            4455554222   144444555544322  346779999999999999999875 4678999999999999999998822


Q ss_pred             CCCCCcceEEeccCccccccccccccccccccccccccCCCCCCceeEEEEeCChH------------------------
Q 026513          117 NIGPKKMKLHLVPDRTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLN------------------------  172 (237)
Q Consensus       117 ~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~~------------------------  172 (237)
                      ...    ++.++.+|+.+                     ....++||+|++|||+.                        
T Consensus       156 ~~~----~i~~~~~d~~~---------------------~~~~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g  210 (275)
T PRK09328        156 LGA----RVEFLQGDWFE---------------------PLPGGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGG  210 (275)
T ss_pred             CCC----cEEEEEccccC---------------------cCCCCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCC
Confidence            222    37888888753                     11246899999999842                        


Q ss_pred             -----HHHHHHHHHhHhcCCCeEEEEeccCCCCHHHHHHHHhhc-cccce
Q 026513          173 -----PLLQLADHIVSYAKPGAVVGISGILSEQLPHIINRYSEF-LEDIL  216 (237)
Q Consensus       173 -----~~~~~l~~~~~~L~~gG~liis~~~~~~~~~~~~~~~~~-~~~~~  216 (237)
                           .+..++..+.++|+|||++++.. -..+..++...+... |..++
T Consensus       211 ~~g~~~~~~~~~~~~~~Lk~gG~l~~e~-g~~~~~~~~~~l~~~gf~~v~  259 (275)
T PRK09328        211 EDGLDFYRRIIEQAPRYLKPGGWLLLEI-GYDQGEAVRALLAAAGFADVE  259 (275)
T ss_pred             CCHHHHHHHHHHHHHHhcccCCEEEEEE-CchHHHHHHHHHHhCCCceeE
Confidence                 12456788889999999999953 223344555555543 54443

>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase

Probab=99.55  E-value=5.5e-14  Score=113.74  Aligned_cols=121  Identities=17%  Similarity=0.126  Sum_probs=94.0

Q ss_pred             CCCeEEEEcCcchHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccccc
Q 026513           70 GGELFLDYGTGSGILGIAAIKF-GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDL  148 (237)
Q Consensus        70 ~~~~vLDlG~G~G~~~~~la~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~  148 (237)
                      ...++||+|||+|.++..++.. +...++|+|+++.+++.|++++...++.+    +.++++|+.+..            
T Consensus        16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~n----i~~i~~d~~~~~------------   79 (194)
T TIGR00091        16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLKN----LHVLCGDANELL------------   79 (194)
T ss_pred             CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCCC----EEEEccCHHHHH------------
Confidence            4568999999999999988864 67789999999999999999999888875    889999986311            


Q ss_pred             ccccccCCCCCCceeEEEEeCChHH-----------HHHHHHHHhHhcCCCeEEEEeccCCCCHHHHHHHHhhc
Q 026513          149 SSHKIRGISQTEKYDVVIANILLNP-----------LLQLADHIVSYAKPGAVVGISGILSEQLPHIINRYSEF  211 (237)
Q Consensus       149 ~~~~~~~~~~~~~fD~I~~n~~~~~-----------~~~~l~~~~~~L~~gG~liis~~~~~~~~~~~~~~~~~  211 (237)
                           ....+++.+|.|++|.|-.+           ...+++.+.+.|+|||.+++.........++...+...
T Consensus        80 -----~~~~~~~~~d~v~~~~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~~~~~~~~~~~~~~~  148 (194)
T TIGR00091        80 -----DKFFPDGSLSKVFLNFPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDNEPLFEDMLKVLSEN  148 (194)
T ss_pred             -----HhhCCCCceeEEEEECCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhC
Confidence                 12223468999999876321           14689999999999999999765555555666666543

In E. coli, this protein flanks the DNA repair protein MutY, also called micA.

>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed

Probab=99.54  E-value=2e-13  Score=115.96  Aligned_cols=105  Identities=25%  Similarity=0.359  Sum_probs=84.7

Q ss_pred             ccCCCeEEEEcCcchHHHHHHHHh-CC-CeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccc
Q 026513           68 IKGGELFLDYGTGSGILGIAAIKF-GA-AMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVV  145 (237)
Q Consensus        68 ~~~~~~vLDlG~G~G~~~~~la~~-~~-~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  145 (237)
                      +.+|.+|||+|||+|..+..+++. +. .+|+++|+++.+++.|+++....++.+    +.++.+|+.+.          
T Consensus        75 ~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~----v~~~~~d~~~l----------  140 (272)
T PRK11873         75 LKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTN----VEFRLGEIEAL----------  140 (272)
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCC----EEEEEcchhhC----------
Confidence            467899999999999988877654 43 579999999999999999988877654    77888886521          


Q ss_pred             cccccccccCCCCCCceeEEEEeCChHHH---HHHHHHHhHhcCCCeEEEEecc
Q 026513          146 EDLSSHKIRGISQTEKYDVVIANILLNPL---LQLADHIVSYAKPGAVVGISGI  196 (237)
Q Consensus       146 ~~~~~~~~~~~~~~~~fD~I~~n~~~~~~---~~~l~~~~~~L~~gG~liis~~  196 (237)
                                ..++++||+|+++..+++.   ..+++++.++|+|||.++++++
T Consensus       141 ----------~~~~~~fD~Vi~~~v~~~~~d~~~~l~~~~r~LkpGG~l~i~~~  184 (272)
T PRK11873        141 ----------PVADNSVDVIISNCVINLSPDKERVFKEAFRVLKPGGRFAISDV  184 (272)
T ss_pred             ----------CCCCCceeEEEEcCcccCCCCHHHHHHHHHHHcCCCcEEEEEEe
Confidence                      1235689999999876543   4689999999999999999755

>PRK10258 biotin biosynthesis protein BioC; Provisional

Probab=99.54  E-value=1.7e-13  Score=114.98  Aligned_cols=109  Identities=19%  Similarity=0.266  Sum_probs=84.5

Q ss_pred             CCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccccc
Q 026513           70 GGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDLS  149 (237)
Q Consensus        70 ~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~  149 (237)
                      ++.+|||+|||+|.++..++..+ .+++++|+|+.+++.|+++...         ..++++|+.+               
T Consensus        42 ~~~~vLDiGcG~G~~~~~l~~~~-~~v~~~D~s~~~l~~a~~~~~~---------~~~~~~d~~~---------------   96 (251)
T PRK10258         42 KFTHVLDAGCGPGWMSRYWRERG-SQVTALDLSPPMLAQARQKDAA---------DHYLAGDIES---------------   96 (251)
T ss_pred             CCCeEEEeeCCCCHHHHHHHHcC-CeEEEEECCHHHHHHHHhhCCC---------CCEEEcCccc---------------
Confidence            46789999999999998888764 6799999999999999876421         2356677642               


Q ss_pred             cccccCCCCCCceeEEEEeCChHHH---HHHHHHHhHhcCCCeEEEEeccCCCCHHHHHHHH
Q 026513          150 SHKIRGISQTEKYDVVIANILLNPL---LQLADHIVSYAKPGAVVGISGILSEQLPHIINRY  208 (237)
Q Consensus       150 ~~~~~~~~~~~~fD~I~~n~~~~~~---~~~l~~~~~~L~~gG~liis~~~~~~~~~~~~~~  208 (237)
                           ...++.+||+|+++.++++.   ..++.++.++|+|||.++++.+......++...+
T Consensus        97 -----~~~~~~~fD~V~s~~~l~~~~d~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~el~~~~  153 (251)
T PRK10258         97 -----LPLATATFDLAWSNLAVQWCGNLSTALRELYRVVRPGGVVAFTTLVQGSLPELHQAW  153 (251)
T ss_pred             -----CcCCCCcEEEEEECchhhhcCCHHHHHHHHHHHcCCCeEEEEEeCCCCchHHHHHHH
Confidence                 11235689999999987654   4679999999999999999987766666655544

>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase

Probab=99.54  E-value=1.4e-13  Score=120.96  Aligned_cols=155  Identities=11%  Similarity=0.036  Sum_probs=108.8

Q ss_pred             eeEEeCcccccCCCCchhHHHHHHHHHhhccCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCC
Q 026513           39 TNIILNPGLAFGSGEHATTKLCLLLLRRLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNI  118 (237)
Q Consensus        39 ~~~~~~~~~~f~~g~~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~  118 (237)
                      ..+.+.|+.+|+.+......++...++..-..+.+|||+|||+|.+++.+++. +.+|+|+|+++.+++.|++|+..+++
T Consensus       166 ~~~~~~~~~F~Q~N~~~~~~l~~~v~~~~~~~~~~vlDl~~G~G~~sl~la~~-~~~v~~vE~~~~av~~a~~n~~~~~~  244 (353)
T TIGR02143       166 FIYRQVENSFTQPNAAVNIKMLEWACEVTQGSKGDLLELYCGNGNFSLALAQN-FRRVLATEIAKPSVNAAQYNIAANNI  244 (353)
T ss_pred             EEEEECCCCcccCCHHHHHHHHHHHHHHhhcCCCcEEEEeccccHHHHHHHHh-CCEEEEEECCHHHHHHHHHHHHHcCC
Confidence            57888888888776655555554444332222347999999999999988876 46899999999999999999999998


Q ss_pred             CCCcceEEeccCccccccccccccccccccccccc---cCCC-CCCceeEEEEeCChHHH-HHHHHHHhHhcCCCeEEEE
Q 026513          119 GPKKMKLHLVPDRTFTASMNERVDGVVEDLSSHKI---RGIS-QTEKYDVVIANILLNPL-LQLADHIVSYAKPGAVVGI  193 (237)
Q Consensus       119 ~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~fD~I~~n~~~~~~-~~~l~~~~~~L~~gG~lii  193 (237)
                      .+    +.++.+|+.+...     .....   ..+   .... ...+||+|+.|||+..+ ..+++.+.   +|++.+|+
T Consensus       245 ~~----v~~~~~d~~~~~~-----~~~~~---~~~~~~~~~~~~~~~~d~v~lDPPR~G~~~~~l~~l~---~~~~ivYv  309 (353)
T TIGR02143       245 DN----VQIIRMSAEEFTQ-----AMNGV---REFRRLKGIDLKSYNCSTIFVDPPRAGLDPDTCKLVQ---AYERILYI  309 (353)
T ss_pred             Cc----EEEEEcCHHHHHH-----HHhhc---cccccccccccccCCCCEEEECCCCCCCcHHHHHHHH---cCCcEEEE
Confidence            75    8889999863210     00000   000   0000 01248999999997664 34445444   48999999


Q ss_pred             eccCCCCHHHHHHHHh
Q 026513          194 SGILSEQLPHIINRYS  209 (237)
Q Consensus       194 s~~~~~~~~~~~~~~~  209 (237)
                      ||...+..+++.....
T Consensus       310 sC~p~tlaRDl~~L~~  325 (353)
T TIGR02143       310 SCNPETLKANLEQLSE  325 (353)
T ss_pred             EcCHHHHHHHHHHHhc
Confidence            9999888888887653

This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.

>TIGR01177 conserved hypothetical protein TIGR01177

Probab=99.54  E-value=2.7e-13  Score=118.26  Aligned_cols=112  Identities=17%  Similarity=0.119  Sum_probs=88.7

Q ss_pred             ccCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccc
Q 026513           68 IKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVED  147 (237)
Q Consensus        68 ~~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  147 (237)
                      .++|.+|||+|||+|.+++.++.. ..+++|+|+++.+++.|++|++..++.+    +.+..+|..+.            
T Consensus       180 ~~~g~~vLDp~cGtG~~lieaa~~-~~~v~g~Di~~~~~~~a~~nl~~~g~~~----i~~~~~D~~~l------------  242 (329)
T TIGR01177       180 VTEGDRVLDPFCGTGGFLIEAGLM-GAKVIGCDIDWKMVAGARINLEHYGIED----FFVKRGDATKL------------  242 (329)
T ss_pred             CCCcCEEEECCCCCCHHHHHHHHh-CCeEEEEcCCHHHHHHHHHHHHHhCCCC----CeEEecchhcC------------
Confidence            467889999999999999887776 4569999999999999999999888875    67778887631            


Q ss_pred             cccccccCCCCCCceeEEEEeCChH------------HHHHHHHHHhHhcCCCeEEEEeccCCCCHHHH
Q 026513          148 LSSHKIRGISQTEKYDVVIANILLN------------PLLQLADHIVSYAKPGAVVGISGILSEQLPHI  204 (237)
Q Consensus       148 ~~~~~~~~~~~~~~fD~I~~n~~~~------------~~~~~l~~~~~~L~~gG~liis~~~~~~~~~~  204 (237)
                              ....++||+|++|||+.            .+.+++..+.+.|+|||++++......+..++
T Consensus       243 --------~~~~~~~D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~~~~~~~  303 (329)
T TIGR01177       243 --------PLSSESVDAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPTRIDLESL  303 (329)
T ss_pred             --------CcccCCCCEEEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcCCCCHHHH
Confidence                    11246899999999851            24678999999999999998864333344443

This family is found exclusively in the Archaea.

>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional

Probab=99.53  E-value=4.7e-14  Score=125.18  Aligned_cols=134  Identities=19%  Similarity=0.258  Sum_probs=99.1

Q ss_pred             CCCCCceeEEeCcccccCCCCchhHH-------HHHHHH-Hh-hccCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCH
Q 026513           33 PPDVQATNIILNPGLAFGSGEHATTK-------LCLLLL-RR-LIKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDP  103 (237)
Q Consensus        33 ~~~~~~~~~~~~~~~~f~~g~~~~~~-------~~~~~l-~~-~~~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~  103 (237)
                      ......+.+.+++.|.|++|.+....       ..+..+ +. .+++|.+|||+|||+|.++..+++....+|+|+|+|+
T Consensus       121 d~~n~~y~l~ld~~m~ys~g~~~~~~~L~~Aq~~k~~~l~~~l~l~~g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~  200 (383)
T PRK11705        121 DLGNDLFEAMLDPRMQYSCGYWKDADTLEEAQEAKLDLICRKLQLKPGMRVLDIGCGWGGLARYAAEHYGVSVVGVTISA  200 (383)
T ss_pred             CCcHHHHHHhcCCCCcccccccCCCCCHHHHHHHHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHCCCEEEEEeCCH
Confidence            34444566778888999888874221       111222 11 1468899999999999999999876456899999999


Q ss_pred             HHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccccccccccCCCCCCceeEEEEeCChHHH-----HHHH
Q 026513          104 QAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLNPL-----LQLA  178 (237)
Q Consensus       104 ~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~~~~-----~~~l  178 (237)
                      .+++.|++++.  ++     .+.+...|..                     ..  .++||.|++...+++.     ..++
T Consensus       201 ~~l~~A~~~~~--~l-----~v~~~~~D~~---------------------~l--~~~fD~Ivs~~~~ehvg~~~~~~~l  250 (383)
T PRK11705        201 EQQKLAQERCA--GL-----PVEIRLQDYR---------------------DL--NGQFDRIVSVGMFEHVGPKNYRTYF  250 (383)
T ss_pred             HHHHHHHHHhc--cC-----eEEEEECchh---------------------hc--CCCCCEEEEeCchhhCChHHHHHHH
Confidence            99999998874  22     2566666654                     12  4689999998877654     5789


Q ss_pred             HHHhHhcCCCeEEEEecc
Q 026513          179 DHIVSYAKPGAVVGISGI  196 (237)
Q Consensus       179 ~~~~~~L~~gG~liis~~  196 (237)
                      +.+.++|+|||.+++..+
T Consensus       251 ~~i~r~LkpGG~lvl~~i  268 (383)
T PRK11705        251 EVVRRCLKPDGLFLLHTI  268 (383)
T ss_pred             HHHHHHcCCCcEEEEEEc
Confidence            999999999999999755

>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.53  E-value=1.5e-13  Score=112.66  Aligned_cols=100  Identities=18%  Similarity=0.273  Sum_probs=81.5

Q ss_pred             ccCCCeEEEEcCcchHHHHHHHHh-C-CCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccc
Q 026513           68 IKGGELFLDYGTGSGILGIAAIKF-G-AAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVV  145 (237)
Q Consensus        68 ~~~~~~vLDlG~G~G~~~~~la~~-~-~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  145 (237)
                      +.++.+|||+|||+|+++..+++. + ..+|+++|+++.+++.|++++...++.+    +.++.+|...           
T Consensus        74 ~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~----v~~~~gd~~~-----------  138 (212)
T PRK13942         74 LKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDN----VEVIVGDGTL-----------  138 (212)
T ss_pred             CCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCC----eEEEECCccc-----------
Confidence            468899999999999999988875 3 3689999999999999999999888764    8888999753           


Q ss_pred             cccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEe
Q 026513          146 EDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGIS  194 (237)
Q Consensus       146 ~~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis  194 (237)
                               .+....+||+|+++.....   +...+.+.|+|||.+++.
T Consensus       139 ---------~~~~~~~fD~I~~~~~~~~---~~~~l~~~LkpgG~lvi~  175 (212)
T PRK13942        139 ---------GYEENAPYDRIYVTAAGPD---IPKPLIEQLKDGGIMVIP  175 (212)
T ss_pred             ---------CCCcCCCcCEEEECCCccc---chHHHHHhhCCCcEEEEE
Confidence                     1223578999999875543   345677889999999884

>PRK10901 16S rRNA methyltransferase B; Provisional

Probab=99.51  E-value=5e-13  Score=120.47  Aligned_cols=120  Identities=16%  Similarity=0.174  Sum_probs=90.1

Q ss_pred             ccCCCeEEEEcCcchHHHHHHHHhC-CCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccc
Q 026513           68 IKGGELFLDYGTGSGILGIAAIKFG-AAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVE  146 (237)
Q Consensus        68 ~~~~~~vLDlG~G~G~~~~~la~~~-~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  146 (237)
                      ..+|.+|||+|||+|..+..++... ..+|+++|+++.+++.+++++...++.     +.++++|..+.           
T Consensus       242 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~-----~~~~~~D~~~~-----------  305 (427)
T PRK10901        242 PQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGLK-----ATVIVGDARDP-----------  305 (427)
T ss_pred             CCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCC-----eEEEEcCcccc-----------
Confidence            4678999999999999999988763 368999999999999999999988764     56778887531           


Q ss_pred             ccccccccCCCCCCceeEEEEeCChHH-------------------------HHHHHHHHhHhcCCCeEEEEecc---CC
Q 026513          147 DLSSHKIRGISQTEKYDVVIANILLNP-------------------------LLQLADHIVSYAKPGAVVGISGI---LS  198 (237)
Q Consensus       147 ~~~~~~~~~~~~~~~fD~I~~n~~~~~-------------------------~~~~l~~~~~~L~~gG~liis~~---~~  198 (237)
                             ......++||.|++|+|...                         ..+++..+.++|+|||++++++.   ..
T Consensus       306 -------~~~~~~~~fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~~  378 (427)
T PRK10901        306 -------AQWWDGQPFDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSILPE  378 (427)
T ss_pred             -------hhhcccCCCCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChh
Confidence                   01122468999999998421                         23678999999999999998743   23


Q ss_pred             CCHHHHHHHHhh
Q 026513          199 EQLPHIINRYSE  210 (237)
Q Consensus       199 ~~~~~~~~~~~~  210 (237)
                      +....+...+..
T Consensus       379 Ene~~v~~~l~~  390 (427)
T PRK10901        379 ENEQQIKAFLAR  390 (427)
T ss_pred             hCHHHHHHHHHh
Confidence            334444444444

>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes

Probab=99.51  E-value=3.6e-13  Score=111.05  Aligned_cols=102  Identities=16%  Similarity=0.231  Sum_probs=83.2

Q ss_pred             CeEEEEcCcchHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccccccc
Q 026513           72 ELFLDYGTGSGILGIAAIKF-GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDLSS  150 (237)
Q Consensus        72 ~~vLDlG~G~G~~~~~la~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~  150 (237)
                      ++|||+|||+|.++..+++. +..+++|+|+|+.+++.+++++...++..   ++.++..|..+                
T Consensus         1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~---~i~~~~~d~~~----------------   61 (224)
T smart00828        1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQG---RIRIFYRDSAK----------------   61 (224)
T ss_pred             CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCc---ceEEEeccccc----------------
Confidence            37999999999999988865 45789999999999999999998887765   47788888642                


Q ss_pred             ccccCCCCCCceeEEEEeCChHHH---HHHHHHHhHhcCCCeEEEEeccC
Q 026513          151 HKIRGISQTEKYDVVIANILLNPL---LQLADHIVSYAKPGAVVGISGIL  197 (237)
Q Consensus       151 ~~~~~~~~~~~fD~I~~n~~~~~~---~~~l~~~~~~L~~gG~liis~~~  197 (237)
                          ... .++||+|++..++++.   ..+++.+.++|+|||.+++.++.
T Consensus        62 ----~~~-~~~fD~I~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~  106 (224)
T smart00828       62 ----DPF-PDTYDLVFGFEVIHHIKDKMDLFSNISRHLKDGGHLVLADFI  106 (224)
T ss_pred             ----CCC-CCCCCEeehHHHHHhCCCHHHHHHHHHHHcCCCCEEEEEEcc
Confidence                111 3589999997766554   46899999999999999997653

>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins

Probab=99.51  E-value=8.8e-13  Score=104.99  Aligned_cols=132  Identities=15%  Similarity=0.187  Sum_probs=92.0

Q ss_pred             CeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccccccc
Q 026513           72 ELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDLSSH  151 (237)
Q Consensus        72 ~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~  151 (237)
                      .++||+|||.|.++..|+.. ..+++++|+|+.+++.|++.+..  .++    +.+++.|+.                  
T Consensus        45 ~~alEvGCs~G~lT~~LA~r-Cd~LlavDis~~Al~~Ar~Rl~~--~~~----V~~~~~dvp------------------   99 (201)
T PF05401_consen   45 RRALEVGCSIGVLTERLAPR-CDRLLAVDISPRALARARERLAG--LPH----VEWIQADVP------------------   99 (201)
T ss_dssp             EEEEEE--TTSHHHHHHGGG-EEEEEEEES-HHHHHHHHHHTTT---SS----EEEEES-TT------------------
T ss_pred             ceeEecCCCccHHHHHHHHh-hCceEEEeCCHHHHHHHHHhcCC--CCC----eEEEECcCC------------------
Confidence            58999999999999999988 57799999999999999998764  343    889899876                  


Q ss_pred             cccCCCCCCceeEEEEeCChHHH------HHHHHHHhHhcCCCeEEEEeccC---------CCCHHHHHHHHhhccccce
Q 026513          152 KIRGISQTEKYDVVIANILLNPL------LQLADHIVSYAKPGAVVGISGIL---------SEQLPHIINRYSEFLEDIL  216 (237)
Q Consensus       152 ~~~~~~~~~~fD~I~~n~~~~~~------~~~l~~~~~~L~~gG~liis~~~---------~~~~~~~~~~~~~~~~~~~  216 (237)
                         ...+.++||+|++..+++.+      ..++..+...|+|||.|++....         ......+...+.+.+..++
T Consensus       100 ---~~~P~~~FDLIV~SEVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~rd~~c~~wgh~~ga~tv~~~~~~~~~~~~  176 (201)
T PF05401_consen  100 ---EFWPEGRFDLIVLSEVLYYLDDAEDLRAALDRLVAALAPGGHLVFGHARDANCRRWGHAAGAETVLEMLQEHLTEVE  176 (201)
T ss_dssp             ---T---SS-EEEEEEES-GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE-HHHHHHTT-S--HHHHHHHHHHHSEEEE
T ss_pred             ---CCCCCCCeeEEEEehHhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEecCCcccccCcccchHHHHHHHHHHhhhee
Confidence               34457899999998876544      45789999999999999995332         2246677777777665554


Q ss_pred             ee------ecCCEEEEEEEEc
Q 026513          217 VS------EMDDWTCVSGKKK  231 (237)
Q Consensus       217 ~~------~~~~w~~~~~~~~  231 (237)
                      -.      ...+|....|+++
T Consensus       177 ~~~~~~~~~~~~~~~~~~~~~  197 (201)
T PF05401_consen  177 RVECRGGSPNEDCLLARFRNP  197 (201)
T ss_dssp             EEEEE-SSTTSEEEEEEEE--
T ss_pred             EEEEcCCCCCCceEeeeecCC
Confidence            32      2445766666654

The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.

>PRK14103 trans-aconitate 2-methyltransferase; Provisional

Probab=99.51  E-value=1.2e-13  Score=116.29  Aligned_cols=94  Identities=19%  Similarity=0.238  Sum_probs=77.0

Q ss_pred             cCCCeEEEEcCcchHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccc
Q 026513           69 KGGELFLDYGTGSGILGIAAIKF-GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVED  147 (237)
Q Consensus        69 ~~~~~vLDlG~G~G~~~~~la~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  147 (237)
                      .++.+|||+|||+|.++..++.. +..+|+|+|+|+.+++.|++.    +       +.++++|..+             
T Consensus        28 ~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~----~-------~~~~~~d~~~-------------   83 (255)
T PRK14103         28 ERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER----G-------VDARTGDVRD-------------   83 (255)
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc----C-------CcEEEcChhh-------------
Confidence            56789999999999999998875 456899999999999998753    2       4566777642             


Q ss_pred             cccccccCCCCCCceeEEEEeCChHHH---HHHHHHHhHhcCCCeEEEEe
Q 026513          148 LSSHKIRGISQTEKYDVVIANILLNPL---LQLADHIVSYAKPGAVVGIS  194 (237)
Q Consensus       148 ~~~~~~~~~~~~~~fD~I~~n~~~~~~---~~~l~~~~~~L~~gG~liis  194 (237)
                              +.+.++||+|+++.+++++   ..++.++.+.|+|||.+++.
T Consensus        84 --------~~~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~~~  125 (255)
T PRK14103         84 --------WKPKPDTDVVVSNAALQWVPEHADLLVRWVDELAPGSWIAVQ  125 (255)
T ss_pred             --------CCCCCCceEEEEehhhhhCCCHHHHHHHHHHhCCCCcEEEEE
Confidence                    2235689999999988776   46789999999999999986

>PRK07402 precorrin-6B methylase; Provisional

Probab=99.50  E-value=1e-12  Score=106.35  Aligned_cols=118  Identities=14%  Similarity=0.218  Sum_probs=88.2

Q ss_pred             ccCCCeEEEEcCcchHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccc
Q 026513           68 IKGGELFLDYGTGSGILGIAAIKF-GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVE  146 (237)
Q Consensus        68 ~~~~~~vLDlG~G~G~~~~~la~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  146 (237)
                      ..++.+|||+|||+|.++..+++. +..+|+++|+|+.+++.+++++...++.+    ++++.+|..+.           
T Consensus        38 ~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~----v~~~~~d~~~~-----------  102 (196)
T PRK07402         38 LEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKN----VEVIEGSAPEC-----------  102 (196)
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCC----eEEEECchHHH-----------
Confidence            357889999999999999998864 45789999999999999999999888754    78888886521           


Q ss_pred             ccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEeccCCCCHHHHHHHHh
Q 026513          147 DLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILSEQLPHIINRYS  209 (237)
Q Consensus       147 ~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~~~~~~~~~~~~~~~  209 (237)
                            +...  ...+|.++.+.. .....++..+.+.|+|||.+++.....+...++...+.
T Consensus       103 ------~~~~--~~~~d~v~~~~~-~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~~~~~  156 (196)
T PRK07402        103 ------LAQL--APAPDRVCIEGG-RPIKEILQAVWQYLKPGGRLVATASSLEGLYAISEGLA  156 (196)
T ss_pred             ------HhhC--CCCCCEEEEECC-cCHHHHHHHHHHhcCCCeEEEEEeecHHHHHHHHHHHH
Confidence                  0011  234677777653 34567889999999999999998665444444444444

>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB

Probab=99.50  E-value=2.7e-13  Score=108.72  Aligned_cols=100  Identities=19%  Similarity=0.257  Sum_probs=78.5

Q ss_pred             CCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccccc
Q 026513           70 GGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDLS  149 (237)
Q Consensus        70 ~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~  149 (237)
                      ++.++||+|||.|..+++||+.|.. |+++|+|+.+++.+++.+...+++     +.....|+.+               
T Consensus        30 ~~g~~LDlgcG~GRNalyLA~~G~~-VtAvD~s~~al~~l~~~a~~~~l~-----i~~~~~Dl~~---------------   88 (192)
T PF03848_consen   30 KPGKALDLGCGEGRNALYLASQGFD-VTAVDISPVALEKLQRLAEEEGLD-----IRTRVADLND---------------   88 (192)
T ss_dssp             -SSEEEEES-TTSHHHHHHHHTT-E-EEEEESSHHHHHHHHHHHHHTT-T-----EEEEE-BGCC---------------
T ss_pred             CCCcEEEcCCCCcHHHHHHHHCCCe-EEEEECCHHHHHHHHHHHhhcCce-----eEEEEecchh---------------
Confidence            3458999999999999999999876 999999999999999998888876     7777787653               


Q ss_pred             cccccCCCCCCceeEEEEeCChH-----HHHHHHHHHhHhcCCCeEEEEecc
Q 026513          150 SHKIRGISQTEKYDVVIANILLN-----PLLQLADHIVSYAKPGAVVGISGI  196 (237)
Q Consensus       150 ~~~~~~~~~~~~fD~I~~n~~~~-----~~~~~l~~~~~~L~~gG~liis~~  196 (237)
                            ....+.||+|++..++.     ....+++.+...++|||++++.++
T Consensus        89 ------~~~~~~yD~I~st~v~~fL~~~~~~~i~~~m~~~~~pGG~~li~~~  134 (192)
T PF03848_consen   89 ------FDFPEEYDFIVSTVVFMFLQRELRPQIIENMKAATKPGGYNLIVTF  134 (192)
T ss_dssp             ------BS-TTTEEEEEEESSGGGS-GGGHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             ------ccccCCcCEEEEEEEeccCCHHHHHHHHHHHHhhcCCcEEEEEEEe
Confidence                  22246899999876653     345789999999999999888544

When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.

>PLN02781 Probable caffeoyl-CoA O-methyltransferase

Probab=99.50  E-value=3.8e-13  Score=111.86  Aligned_cols=121  Identities=13%  Similarity=0.222  Sum_probs=92.5

Q ss_pred             HHHHHHHHhhccCCCeEEEEcCcchHHHHHHHHh--CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccc
Q 026513           58 KLCLLLLRRLIKGGELFLDYGTGSGILGIAAIKF--GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTA  135 (237)
Q Consensus        58 ~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~la~~--~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~  135 (237)
                      ..++..+.+. .++++|||+|||+|+-++.++..  +..+++++|+++.+++.|++++..+++.+   +++++.+|+.+.
T Consensus        57 g~~L~~l~~~-~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~---~i~~~~gda~~~  132 (234)
T PLN02781         57 GLFLSMLVKI-MNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDH---KINFIQSDALSA  132 (234)
T ss_pred             HHHHHHHHHH-hCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCC---cEEEEEccHHHH
Confidence            3344444333 45679999999999988877753  46789999999999999999999999875   588889998631


Q ss_pred             cccccccccccccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEecc
Q 026513          136 SMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGI  196 (237)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~~  196 (237)
                      .         ..+     ..-.+.++||+|+++..-..+..++..+.++|+|||.+++...
T Consensus       133 L---------~~l-----~~~~~~~~fD~VfiDa~k~~y~~~~~~~~~ll~~GG~ii~dn~  179 (234)
T PLN02781        133 L---------DQL-----LNNDPKPEFDFAFVDADKPNYVHFHEQLLKLVKVGGIIAFDNT  179 (234)
T ss_pred             H---------HHH-----HhCCCCCCCCEEEECCCHHHHHHHHHHHHHhcCCCeEEEEEcC
Confidence            1         000     0001146899999998878888899999999999999998543

>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional

Probab=99.50  E-value=2e-13  Score=118.67  Aligned_cols=104  Identities=20%  Similarity=0.233  Sum_probs=80.2

Q ss_pred             cCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccccc
Q 026513           69 KGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDL  148 (237)
Q Consensus        69 ~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~  148 (237)
                      .+|.+|||+|||+|.++..++..+...|+|+|+|+.++..++......+...   ++.++.+|+.+              
T Consensus       121 l~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~~~~---~i~~~~~d~e~--------------  183 (322)
T PRK15068        121 LKGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLGNDQ---RAHLLPLGIEQ--------------  183 (322)
T ss_pred             CCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcCCCC---CeEEEeCCHHH--------------
Confidence            4578999999999999999998887789999999999876554433222111   37777877652              


Q ss_pred             ccccccCCCCCCceeEEEEeCChHHH---HHHHHHHhHhcCCCeEEEEecc
Q 026513          149 SSHKIRGISQTEKYDVVIANILLNPL---LQLADHIVSYAKPGAVVGISGI  196 (237)
Q Consensus       149 ~~~~~~~~~~~~~fD~I~~n~~~~~~---~~~l~~~~~~L~~gG~liis~~  196 (237)
                             +...++||+|+|...+++.   ..+++++.+.|+|||.++++++
T Consensus       184 -------lp~~~~FD~V~s~~vl~H~~dp~~~L~~l~~~LkpGG~lvl~~~  227 (322)
T PRK15068        184 -------LPALKAFDTVFSMGVLYHRRSPLDHLKQLKDQLVPGGELVLETL  227 (322)
T ss_pred             -------CCCcCCcCEEEECChhhccCCHHHHHHHHHHhcCCCcEEEEEEE
Confidence                   1125689999998887664   4679999999999999998643

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=99.50  E-value=2.9e-13  Score=123.65  Aligned_cols=104  Identities=21%  Similarity=0.199  Sum_probs=83.6

Q ss_pred             ccCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccc
Q 026513           68 IKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVED  147 (237)
Q Consensus        68 ~~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  147 (237)
                      +.++.+|||+|||+|.++..++.....+|+|+|+|+.+++.|+++....+  .   ++.+..+|+.+.            
T Consensus       264 ~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~~~~~--~---~v~~~~~d~~~~------------  326 (475)
T PLN02336        264 LKPGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERAIGRK--C---SVEFEVADCTKK------------  326 (475)
T ss_pred             CCCCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHhhcCC--C---ceEEEEcCcccC------------
Confidence            35678999999999999998887645689999999999999998875322  1   378888887631            


Q ss_pred             cccccccCCCCCCceeEEEEeCChHHH---HHHHHHHhHhcCCCeEEEEecc
Q 026513          148 LSSHKIRGISQTEKYDVVIANILLNPL---LQLADHIVSYAKPGAVVGISGI  196 (237)
Q Consensus       148 ~~~~~~~~~~~~~~fD~I~~n~~~~~~---~~~l~~~~~~L~~gG~liis~~  196 (237)
                              ..++++||+|+|...+.++   ..+++++.++|+|||.++++++
T Consensus       327 --------~~~~~~fD~I~s~~~l~h~~d~~~~l~~~~r~LkpgG~l~i~~~  370 (475)
T PLN02336        327 --------TYPDNSFDVIYSRDTILHIQDKPALFRSFFKWLKPGGKVLISDY  370 (475)
T ss_pred             --------CCCCCCEEEEEECCcccccCCHHHHHHHHHHHcCCCeEEEEEEe
Confidence                    1235689999998777654   4689999999999999999865

>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=99.49  E-value=2.7e-13  Score=109.19  Aligned_cols=99  Identities=19%  Similarity=0.267  Sum_probs=83.9

Q ss_pred             ccCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccc
Q 026513           68 IKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVED  147 (237)
Q Consensus        68 ~~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  147 (237)
                      ++++.+|||||||+|+.+..+++.. .+|+.+|..+...+.|++|+...+..|    +.+.++|...             
T Consensus        70 ~~~g~~VLEIGtGsGY~aAvla~l~-~~V~siEr~~~L~~~A~~~L~~lg~~n----V~v~~gDG~~-------------  131 (209)
T COG2518          70 LKPGDRVLEIGTGSGYQAAVLARLV-GRVVSIERIEELAEQARRNLETLGYEN----VTVRHGDGSK-------------  131 (209)
T ss_pred             CCCCCeEEEECCCchHHHHHHHHHh-CeEEEEEEcHHHHHHHHHHHHHcCCCc----eEEEECCccc-------------
Confidence            5789999999999999999999984 389999999999999999999999986    8899999874             


Q ss_pred             cccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEe
Q 026513          148 LSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGIS  194 (237)
Q Consensus       148 ~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis  194 (237)
                             -+....+||.|++.......   -+.+.+.|++||++++-
T Consensus       132 -------G~~~~aPyD~I~Vtaaa~~v---P~~Ll~QL~~gGrlv~P  168 (209)
T COG2518         132 -------GWPEEAPYDRIIVTAAAPEV---PEALLDQLKPGGRLVIP  168 (209)
T ss_pred             -------CCCCCCCcCEEEEeeccCCC---CHHHHHhcccCCEEEEE
Confidence                   23345799999998754433   35577889999999983

>PRK14901 16S rRNA methyltransferase B; Provisional

Probab=99.49  E-value=8.9e-13  Score=119.11  Aligned_cols=144  Identities=14%  Similarity=0.114  Sum_probs=101.4

Q ss_pred             ccCCCeEEEEcCcchHHHHHHHHh--CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccc
Q 026513           68 IKGGELFLDYGTGSGILGIAAIKF--GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVV  145 (237)
Q Consensus        68 ~~~~~~vLDlG~G~G~~~~~la~~--~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  145 (237)
                      ..+|.+|||+|||+|..+..++..  +..+|+++|+++.+++.+++++...|+.+    +.++++|..+..-.       
T Consensus       250 ~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~----v~~~~~D~~~~~~~-------  318 (434)
T PRK14901        250 PQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKS----IKILAADSRNLLEL-------  318 (434)
T ss_pred             CCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCe----EEEEeCChhhcccc-------
Confidence            457899999999999999998865  34689999999999999999999999875    88888887631100       


Q ss_pred             cccccccccCCCCCCceeEEEEeCChH-------------------------HHHHHHHHHhHhcCCCeEEEEec-cC-C
Q 026513          146 EDLSSHKIRGISQTEKYDVVIANILLN-------------------------PLLQLADHIVSYAKPGAVVGISG-IL-S  198 (237)
Q Consensus       146 ~~~~~~~~~~~~~~~~fD~I~~n~~~~-------------------------~~~~~l~~~~~~L~~gG~liis~-~~-~  198 (237)
                               .....++||.|++|+|..                         ...+++..+.++|||||+|++++ .. .
T Consensus       319 ---------~~~~~~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi~~  389 (434)
T PRK14901        319 ---------KPQWRGYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTLHP  389 (434)
T ss_pred             ---------cccccccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCh
Confidence                     001245899999998731                         13577999999999999998873 33 2


Q ss_pred             -CCHHHHHHHHhhc--cccce--------eeecCCEEEEEEEEc
Q 026513          199 -EQLPHIINRYSEF--LEDIL--------VSEMDDWTCVSGKKK  231 (237)
Q Consensus       199 -~~~~~~~~~~~~~--~~~~~--------~~~~~~w~~~~~~~~  231 (237)
                       +....+...++.+  |+...        ....+++..+.++|+
T Consensus       390 ~Ene~~v~~~l~~~~~~~~~~~~~~~~P~~~~~dGfF~a~l~k~  433 (434)
T PRK14901        390 AENEAQIEQFLARHPDWKLEPPKQKIWPHRQDGDGFFMAVLRKK  433 (434)
T ss_pred             hhHHHHHHHHHHhCCCcEecCCCCccCCCCCCCCcEEEEEEEeC
Confidence             3333444444544  43221        113466666666654

>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2

Probab=99.49  E-value=2.3e-13  Score=119.59  Aligned_cols=164  Identities=20%  Similarity=0.183  Sum_probs=101.2

Q ss_pred             ceeEEeCcccccCCCCchhHHHHHHHHHhhccCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcC
Q 026513           38 ATNIILNPGLAFGSGEHATTKLCLLLLRRLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNN  117 (237)
Q Consensus        38 ~~~~~~~~~~~f~~g~~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~  117 (237)
                      ...+.+.|+.+|+.+......++..++......+..+||+.||.|.+++.+|.. +.+|+|+|+++.+++.|++|+..|+
T Consensus       164 ~~~~~~~~~sFfQvN~~~~~~l~~~~~~~l~~~~~~vlDlycG~G~fsl~la~~-~~~V~gvE~~~~av~~A~~Na~~N~  242 (352)
T PF05958_consen  164 GLSFRISPGSFFQVNPEQNEKLYEQALEWLDLSKGDVLDLYCGVGTFSLPLAKK-AKKVIGVEIVEEAVEDARENAKLNG  242 (352)
T ss_dssp             TEEEEEETTS---SBHHHHHHHHHHHHHHCTT-TTEEEEES-TTTCCHHHHHCC-SSEEEEEES-HHHHHHHHHHHHHTT
T ss_pred             ceEEEECCCcCccCcHHHHHHHHHHHHHHhhcCCCcEEEEeecCCHHHHHHHhh-CCeEEEeeCCHHHHHHHHHHHHHcC
Confidence            467889999999887776666665555443222338999999999999999987 6779999999999999999999999


Q ss_pred             CCCCcceEEeccCccccccccccccccccccccc-cccC-CCCCCceeEEEEeCChHHHHH-HHHHHhHhcCCCeEEEEe
Q 026513          118 IGPKKMKLHLVPDRTFTASMNERVDGVVEDLSSH-KIRG-ISQTEKYDVVIANILLNPLLQ-LADHIVSYAKPGAVVGIS  194 (237)
Q Consensus       118 ~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~fD~I~~n~~~~~~~~-~l~~~~~~L~~gG~liis  194 (237)
                      +.|    ++|+.++..+..     ..+. ...+. .+.. ......+|+|+.|||+..+.. ++..+.   ++.-.+|+|
T Consensus       243 i~n----~~f~~~~~~~~~-----~~~~-~~r~~~~~~~~~~~~~~~d~vilDPPR~G~~~~~~~~~~---~~~~ivYvS  309 (352)
T PF05958_consen  243 IDN----VEFIRGDAEDFA-----KALA-KAREFNRLKGIDLKSFKFDAVILDPPRAGLDEKVIELIK---KLKRIVYVS  309 (352)
T ss_dssp             --S----EEEEE--SHHCC-----CHHC-CS-GGTTGGGS-GGCTTESEEEE---TT-SCHHHHHHHH---HSSEEEEEE
T ss_pred             CCc----ceEEEeeccchh-----HHHH-hhHHHHhhhhhhhhhcCCCEEEEcCCCCCchHHHHHHHh---cCCeEEEEE
Confidence            997    888877653211     0000 00000 0000 011347999999999988764 344333   346799999


Q ss_pred             ccCCCCHHHHHHHHhhccccce
Q 026513          195 GILSEQLPHIINRYSEFLEDIL  216 (237)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~  216 (237)
                      |...+-.+++.... +.|....
T Consensus       310 CnP~tlaRDl~~L~-~~y~~~~  330 (352)
T PF05958_consen  310 CNPATLARDLKILK-EGYKLEK  330 (352)
T ss_dssp             S-HHHHHHHHHHHH-CCEEEEE
T ss_pred             CCHHHHHHHHHHHh-hcCEEEE
Confidence            99988888887754 4554443

1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.

>TIGR00452 methyltransferase, putative

Probab=99.49  E-value=2.2e-13  Score=117.60  Aligned_cols=104  Identities=17%  Similarity=0.105  Sum_probs=77.7

Q ss_pred             cCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccccc
Q 026513           69 KGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDL  148 (237)
Q Consensus        69 ~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~  148 (237)
                      .+|++|||+|||+|.++..++..+...|+|+|.|+.++..++......+...   ++.+...++.+              
T Consensus       120 ~~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~~~~---~v~~~~~~ie~--------------  182 (314)
T TIGR00452       120 LKGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLDNDK---RAILEPLGIEQ--------------  182 (314)
T ss_pred             CCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhccCC---CeEEEECCHHH--------------
Confidence            4678999999999999999888887789999999999877544322211111   25555665531              


Q ss_pred             ccccccCCCCCCceeEEEEeCChHHHH---HHHHHHhHhcCCCeEEEEecc
Q 026513          149 SSHKIRGISQTEKYDVVIANILLNPLL---QLADHIVSYAKPGAVVGISGI  196 (237)
Q Consensus       149 ~~~~~~~~~~~~~fD~I~~n~~~~~~~---~~l~~~~~~L~~gG~liis~~  196 (237)
                             +....+||+|+|+.++++..   .++.++.+.|+|||.|++.++
T Consensus       183 -------lp~~~~FD~V~s~gvL~H~~dp~~~L~el~r~LkpGG~Lvletl  226 (314)
T TIGR00452       183 -------LHELYAFDTVFSMGVLYHRKSPLEHLKQLKHQLVIKGELVLETL  226 (314)
T ss_pred             -------CCCCCCcCEEEEcchhhccCCHHHHHHHHHHhcCCCCEEEEEEE
Confidence                   22235899999999887653   678999999999999998643

Known examples to date are restricted to the proteobacteria.

>PRK00811 spermidine synthase; Provisional

Probab=99.49  E-value=1.7e-12  Score=110.87  Aligned_cols=144  Identities=12%  Similarity=0.132  Sum_probs=99.3

Q ss_pred             cCCCeEEEEcCcchHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHHcCCCC-CcceEEeccCcccccccccccccccc
Q 026513           69 KGGELFLDYGTGSGILGIAAIKF-GAAMSVGADIDPQAIKSAHQNAALNNIGP-KKMKLHLVPDRTFTASMNERVDGVVE  146 (237)
Q Consensus        69 ~~~~~vLDlG~G~G~~~~~la~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~~~-~~~~v~~~~~d~~~~~~~~~~~~~~~  146 (237)
                      +..++||++|||+|..+..++++ +..+|+++|+++.+++.|++.+...+... ..-+++++.+|.....          
T Consensus        75 ~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l----------  144 (283)
T PRK00811         75 PNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFV----------  144 (283)
T ss_pred             CCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHH----------
Confidence            45679999999999999998876 67889999999999999999876432110 1125788889876311          


Q ss_pred             ccccccccCCCCCCceeEEEEeCC--h----HH-HHHHHHHHhHhcCCCeEEEEecc---C-CCCHHHHHHHHhhccccc
Q 026513          147 DLSSHKIRGISQTEKYDVVIANIL--L----NP-LLQLADHIVSYAKPGAVVGISGI---L-SEQLPHIINRYSEFLEDI  215 (237)
Q Consensus       147 ~~~~~~~~~~~~~~~fD~I~~n~~--~----~~-~~~~l~~~~~~L~~gG~liis~~---~-~~~~~~~~~~~~~~~~~~  215 (237)
                             ..  ..++||+|+++.+  .    +. ..++++.+.+.|+|||++++..-   . ......+...+++.|..+
T Consensus       145 -------~~--~~~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~~~~~~~~~~~~~i~~tl~~~F~~v  215 (283)
T PRK00811        145 -------AE--TENSFDVIIVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQSGSPFYQADEIKDMHRKLKEVFPIV  215 (283)
T ss_pred             -------hh--CCCcccEEEECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEeCCCcccCHHHHHHHHHHHHHHCCCE
Confidence                   01  2568999999752  1    11 25778999999999999998421   1 122334444455545554


Q ss_pred             eeee-------cCCEEEEEEEEc
Q 026513          216 LVSE-------MDDWTCVSGKKK  231 (237)
Q Consensus       216 ~~~~-------~~~w~~~~~~~~  231 (237)
                      ....       .+.|..+++++.
T Consensus       216 ~~~~~~vp~~~~~~w~f~~as~~  238 (283)
T PRK00811        216 RPYQAAIPTYPSGLWSFTFASKN  238 (283)
T ss_pred             EEEEeECCcccCchheeEEeecC
Confidence            4422       466999988873

>TIGR00095 RNA methyltransferase, RsmD family

Probab=99.48  E-value=5.8e-13  Score=107.29  Aligned_cols=122  Identities=20%  Similarity=0.235  Sum_probs=92.2

Q ss_pred             CchhHHHHHHHHHhhc---cCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEecc
Q 026513           53 EHATTKLCLLLLRRLI---KGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVP  129 (237)
Q Consensus        53 ~~~~~~~~~~~l~~~~---~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~  129 (237)
                      .+|++..+.+.+-..+   -.|.+|||++||+|.+++.++.+|+.+|+++|.++.+++.+++|+..+++..   +++++.
T Consensus        29 ~rpt~~~vrea~f~~l~~~~~g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~~~~~~~---~~~~~~  105 (189)
T TIGR00095        29 TRPTTRVVRELFFNILRPEIQGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLALLKSGE---QAEVVR  105 (189)
T ss_pred             CCCchHHHHHHHHHHHHHhcCCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhCCcc---cEEEEe
Confidence            4777777776665543   3588999999999999999999988899999999999999999999998764   478889


Q ss_pred             CccccccccccccccccccccccccCCC-CCCceeEEEEeCChHH--HHHHHHHHh--HhcCCCeEEEEe
Q 026513          130 DRTFTASMNERVDGVVEDLSSHKIRGIS-QTEKYDVVIANILLNP--LLQLADHIV--SYAKPGAVVGIS  194 (237)
Q Consensus       130 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~fD~I~~n~~~~~--~~~~l~~~~--~~L~~gG~liis  194 (237)
                      +|+.+..                 .... ....||+|+.+||+..  ...++..+.  .+|+++|.+++.
T Consensus       106 ~D~~~~l-----------------~~~~~~~~~~dvv~~DPPy~~~~~~~~l~~l~~~~~l~~~~iiv~E  158 (189)
T TIGR00095       106 NSALRAL-----------------KFLAKKPTFDNVIYLDPPFFNGALQALLELCENNWILEDTVLIVVE  158 (189)
T ss_pred             hhHHHHH-----------------HHhhccCCCceEEEECcCCCCCcHHHHHHHHHHCCCCCCCeEEEEE
Confidence            9985311                 1111 1235899999999742  334444443  368999988885

This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.

>PRK01683 trans-aconitate 2-methyltransferase; Provisional

Probab=99.48  E-value=3.4e-13  Score=113.62  Aligned_cols=98  Identities=23%  Similarity=0.318  Sum_probs=79.2

Q ss_pred             ccCCCeEEEEcCcchHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccc
Q 026513           68 IKGGELFLDYGTGSGILGIAAIKF-GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVE  146 (237)
Q Consensus        68 ~~~~~~vLDlG~G~G~~~~~la~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  146 (237)
                      +.++.+|||+|||+|.++..++.. +..+|+|+|+|+.+++.|+++.     .    ++.++.+|..+            
T Consensus        29 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~-----~----~~~~~~~d~~~------------   87 (258)
T PRK01683         29 LENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRL-----P----DCQFVEADIAS------------   87 (258)
T ss_pred             CcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhC-----C----CCeEEECchhc------------
Confidence            356789999999999999998865 5678999999999999998763     2    25566777642            


Q ss_pred             ccccccccCCCCCCceeEEEEeCChHHH---HHHHHHHhHhcCCCeEEEEec
Q 026513          147 DLSSHKIRGISQTEKYDVVIANILLNPL---LQLADHIVSYAKPGAVVGISG  195 (237)
Q Consensus       147 ~~~~~~~~~~~~~~~fD~I~~n~~~~~~---~~~l~~~~~~L~~gG~liis~  195 (237)
                               +.+..+||+|+++..++++   ..+++++.+.|+|||.+++..
T Consensus        88 ---------~~~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~~~~~~  130 (258)
T PRK01683         88 ---------WQPPQALDLIFANASLQWLPDHLELFPRLVSLLAPGGVLAVQM  130 (258)
T ss_pred             ---------cCCCCCccEEEEccChhhCCCHHHHHHHHHHhcCCCcEEEEEC
Confidence                     2234689999999988765   467999999999999999863

>PRK04266 fibrillarin; Provisional

Probab=99.48  E-value=2e-12  Score=106.84  Aligned_cols=133  Identities=15%  Similarity=0.164  Sum_probs=91.6

Q ss_pred             ccCCCeEEEEcCcchHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccc
Q 026513           68 IKGGELFLDYGTGSGILGIAAIKF-GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVE  146 (237)
Q Consensus        68 ~~~~~~vLDlG~G~G~~~~~la~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  146 (237)
                      +.+|.+|||+|||+|.++..+++. +..+|+|+|+++.|++.+.++++..  .+    +.++.+|..++..         
T Consensus        70 i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~--~n----v~~i~~D~~~~~~---------  134 (226)
T PRK04266         70 IKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEER--KN----IIPILADARKPER---------  134 (226)
T ss_pred             CCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhc--CC----cEEEECCCCCcch---------
Confidence            568899999999999999999875 4468999999999999887776643  33    6677888653110         


Q ss_pred             ccccccccCCCCCCceeEEEEeCChHHH-HHHHHHHhHhcCCCeEEEEe------ccCCCCH---HHHHHHHhh-ccccc
Q 026513          147 DLSSHKIRGISQTEKYDVVIANILLNPL-LQLADHIVSYAKPGAVVGIS------GILSEQL---PHIINRYSE-FLEDI  215 (237)
Q Consensus       147 ~~~~~~~~~~~~~~~fD~I~~n~~~~~~-~~~l~~~~~~L~~gG~liis------~~~~~~~---~~~~~~~~~-~~~~~  215 (237)
                              ......+||+|+++.+.... ..++..+.+.|||||.++++      ++..+..   .+....+.+ .|+.+
T Consensus       135 --------~~~l~~~~D~i~~d~~~p~~~~~~L~~~~r~LKpGG~lvI~v~~~~~d~~~~~~~~~~~~~~~l~~aGF~~i  206 (226)
T PRK04266        135 --------YAHVVEKVDVIYQDVAQPNQAEIAIDNAEFFLKDGGYLLLAIKARSIDVTKDPKEIFKEEIRKLEEGGFEIL  206 (226)
T ss_pred             --------hhhccccCCEEEECCCChhHHHHHHHHHHHhcCCCcEEEEEEecccccCcCCHHHHHHHHHHHHHHcCCeEE
Confidence                    00113469999997754322 34578999999999999993      3322221   123344444 37777


Q ss_pred             eeeecCCE
Q 026513          216 LVSEMDDW  223 (237)
Q Consensus       216 ~~~~~~~w  223 (237)
                      +..+...|
T Consensus       207 ~~~~l~p~  214 (226)
T PRK04266        207 EVVDLEPY  214 (226)
T ss_pred             EEEcCCCC
Confidence            77665555

>PRK06922 hypothetical protein; Provisional

Probab=99.47  E-value=7.3e-13  Score=122.44  Aligned_cols=104  Identities=16%  Similarity=0.233  Sum_probs=82.2

Q ss_pred             CCCeEEEEcCcchHHHHHHHH-hCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccccc
Q 026513           70 GGELFLDYGTGSGILGIAAIK-FGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDL  148 (237)
Q Consensus        70 ~~~~vLDlG~G~G~~~~~la~-~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~  148 (237)
                      ++.+|||+|||+|.++..++. .+..+++|+|+|+.|++.|++++...+.     ++.++++|..+              
T Consensus       418 ~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g~-----~ie~I~gDa~d--------------  478 (677)
T PRK06922        418 KGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEGR-----SWNVIKGDAIN--------------  478 (677)
T ss_pred             CCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCC-----CeEEEEcchHh--------------
Confidence            578999999999999888875 4677899999999999999988765442     26677888652              


Q ss_pred             ccccccCCCCCCceeEEEEeCChHHH----------------HHHHHHHhHhcCCCeEEEEecc
Q 026513          149 SSHKIRGISQTEKYDVVIANILLNPL----------------LQLADHIVSYAKPGAVVGISGI  196 (237)
Q Consensus       149 ~~~~~~~~~~~~~fD~I~~n~~~~~~----------------~~~l~~~~~~L~~gG~liis~~  196 (237)
                          +....++++||+|+++++++.+                .++++++.++|+|||.+++.+.
T Consensus       479 ----Lp~~fedeSFDvVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~  538 (677)
T PRK06922        479 ----LSSSFEKESVDTIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDG  538 (677)
T ss_pred             ----CccccCCCCEEEEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence                1122335789999999877642                4678999999999999999753

>KOG2904 consensus Predicted methyltransferase [General function prediction only]

Probab=99.47  E-value=3.3e-12  Score=105.68  Aligned_cols=146  Identities=16%  Similarity=0.256  Sum_probs=102.1

Q ss_pred             ceeEEeCcccccCCCCchhHHHHHHH-HHhh----ccCCCeEEEEcCcchHHHHHHHH-hCCCeEEEEeCCHHHHHHHHH
Q 026513           38 ATNIILNPGLAFGSGEHATTKLCLLL-LRRL----IKGGELFLDYGTGSGILGIAAIK-FGAAMSVGADIDPQAIKSAHQ  111 (237)
Q Consensus        38 ~~~~~~~~~~~f~~g~~~~~~~~~~~-l~~~----~~~~~~vLDlG~G~G~~~~~la~-~~~~~v~~vD~s~~~i~~a~~  111 (237)
                      ...+...|+...-   ++.+....++ +...    ...+..+||+|||+|.+++.++. .+...++|+|.|+.++..|.+
T Consensus       114 ~l~l~~~pgVlIP---RpETEE~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~e  190 (328)
T KOG2904|consen  114 DLDLVCKPGVLIP---RPETEEWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKE  190 (328)
T ss_pred             CceEEecCCeeec---CccHHHHHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHH
Confidence            4556666765543   4444333333 3322    22455799999999999998875 578889999999999999999


Q ss_pred             HHHHcCCCCCcceEEec----cCccccccccccccccccccccccccCCCCCCceeEEEEeCCh----------------
Q 026513          112 NAALNNIGPKKMKLHLV----PDRTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILL----------------  171 (237)
Q Consensus       112 ~~~~~~~~~~~~~v~~~----~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~----------------  171 (237)
                      |+..+++.+   ++.++    +.|..++                   .....+++|++++|||+                
T Consensus       191 N~qr~~l~g---~i~v~~~~me~d~~~~-------------------~~l~~~~~dllvsNPPYI~~dD~~~l~~eV~~y  248 (328)
T KOG2904|consen  191 NAQRLKLSG---RIEVIHNIMESDASDE-------------------HPLLEGKIDLLVSNPPYIRKDDNRQLKPEVRLY  248 (328)
T ss_pred             HHHHHhhcC---ceEEEecccccccccc-------------------cccccCceeEEecCCCcccccchhhcCchheec
Confidence            999999887   45555    3444321                   11236899999999993                


Q ss_pred             -------------HHHHHHHHHHhHhcCCCeEEEEeccCCCCHHHHHHHH
Q 026513          172 -------------NPLLQLADHIVSYAKPGAVVGISGILSEQLPHIINRY  208 (237)
Q Consensus       172 -------------~~~~~~l~~~~~~L~~gG~liis~~~~~~~~~~~~~~  208 (237)
                                   ..+..++..+.++|+|||.+.+.-.-.++...+....
T Consensus       249 Ep~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~~~~~~~~~lv~~~  298 (328)
T KOG2904|consen  249 EPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLELVERKEHSYLVRIW  298 (328)
T ss_pred             CchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEecccccCcHHHHHH
Confidence                         2334667888999999999999865444444444433

>PLN02490 MPBQ/MSBQ methyltransferase

Probab=99.46  E-value=1.8e-12  Score=112.81  Aligned_cols=124  Identities=15%  Similarity=0.161  Sum_probs=91.7

Q ss_pred             cCCCeEEEEcCcchHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccc
Q 026513           69 KGGELFLDYGTGSGILGIAAIKF-GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVED  147 (237)
Q Consensus        69 ~~~~~vLDlG~G~G~~~~~la~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  147 (237)
                      .++.+|||+|||+|.++..+++. +..+++++|+|+.+++.|+++....       ++.++.+|..+.            
T Consensus       112 ~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~~-------~i~~i~gD~e~l------------  172 (340)
T PLN02490        112 DRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLK-------ECKIIEGDAEDL------------  172 (340)
T ss_pred             CCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhcc-------CCeEEeccHHhC------------
Confidence            46789999999999999888764 5678999999999999999876422       255678886531            


Q ss_pred             cccccccCCCCCCceeEEEEeCChHHH---HHHHHHHhHhcCCCeEEEEeccC----------------CCCHHHHHHHH
Q 026513          148 LSSHKIRGISQTEKYDVVIANILLNPL---LQLADHIVSYAKPGAVVGISGIL----------------SEQLPHIINRY  208 (237)
Q Consensus       148 ~~~~~~~~~~~~~~fD~I~~n~~~~~~---~~~l~~~~~~L~~gG~liis~~~----------------~~~~~~~~~~~  208 (237)
                              ..++++||+|+++.++++.   ...++++.+.|+|||.+++.+..                .....++.+.+
T Consensus       173 --------p~~~~sFDvVIs~~~L~~~~d~~~~L~e~~rvLkPGG~LvIi~~~~p~~~~~r~~~~~~~~~~t~eEl~~lL  244 (340)
T PLN02490        173 --------PFPTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACLIGPVHPTFWLSRFFADVWMLFPKEEEYIEWF  244 (340)
T ss_pred             --------CCCCCceeEEEEcChhhhCCCHHHHHHHHHHhcCCCcEEEEEEecCcchhHHHHhhhhhccCCCHHHHHHHH
Confidence                    1235689999998877653   46789999999999999875321                12346666666


Q ss_pred             hhc-cccceeee
Q 026513          209 SEF-LEDILVSE  219 (237)
Q Consensus       209 ~~~-~~~~~~~~  219 (237)
                      .+- |+.++..+
T Consensus       245 ~~aGF~~V~i~~  256 (340)
T PLN02490        245 TKAGFKDVKLKR  256 (340)
T ss_pred             HHCCCeEEEEEE
Confidence            653 77666544

>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase

Probab=99.46  E-value=1.7e-12  Score=109.92  Aligned_cols=119  Identities=15%  Similarity=0.109  Sum_probs=90.7

Q ss_pred             ccCCCeEEEEcCcchHHHHHHHHh--CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccc
Q 026513           68 IKGGELFLDYGTGSGILGIAAIKF--GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVV  145 (237)
Q Consensus        68 ~~~~~~vLDlG~G~G~~~~~la~~--~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  145 (237)
                      +++|.+|||+|||+|..+..++..  ....|+++|+++.+++.+++++..+++.+    +.++..|.....         
T Consensus        69 ~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~----v~~~~~D~~~~~---------  135 (264)
T TIGR00446        69 PDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLN----VAVTNFDGRVFG---------  135 (264)
T ss_pred             CCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCc----EEEecCCHHHhh---------
Confidence            467899999999999999988864  24589999999999999999999998864    778888865211         


Q ss_pred             cccccccccCCCCCCceeEEEEeCChH-------------------------HHHHHHHHHhHhcCCCeEEEEe-ccCCC
Q 026513          146 EDLSSHKIRGISQTEKYDVVIANILLN-------------------------PLLQLADHIVSYAKPGAVVGIS-GILSE  199 (237)
Q Consensus       146 ~~~~~~~~~~~~~~~~fD~I~~n~~~~-------------------------~~~~~l~~~~~~L~~gG~liis-~~~~~  199 (237)
                                 ...++||+|++|+|..                         ...+++..+.++|+|||+|+++ |....
T Consensus       136 -----------~~~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~~~  204 (264)
T TIGR00446       136 -----------AAVPKFDAILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSLEP  204 (264)
T ss_pred             -----------hhccCCCEEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCh
Confidence                       1134699999998731                         2346899999999999999998 43333


Q ss_pred             -CHHHHHHHHhh
Q 026513          200 -QLPHIINRYSE  210 (237)
Q Consensus       200 -~~~~~~~~~~~  210 (237)
                       +.+++...+.+
T Consensus       205 ~Ene~vv~~~l~  216 (264)
T TIGR00446       205 EENEAVVDYLLE  216 (264)
T ss_pred             HHHHHHHHHHHH
Confidence             33455555543

>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed

Probab=99.46  E-value=2e-12  Score=105.92  Aligned_cols=100  Identities=13%  Similarity=0.168  Sum_probs=81.3

Q ss_pred             ccCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccc
Q 026513           68 IKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVED  147 (237)
Q Consensus        68 ~~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  147 (237)
                      +.++.+|||+|||+|.++..+++.. .+++++|+++.+++.|++++...++.+    +.++.+|..+             
T Consensus        76 ~~~~~~VLeiG~GsG~~t~~la~~~-~~v~~vd~~~~~~~~a~~~~~~~~~~~----v~~~~~d~~~-------------  137 (212)
T PRK00312         76 LKPGDRVLEIGTGSGYQAAVLAHLV-RRVFSVERIKTLQWEAKRRLKQLGLHN----VSVRHGDGWK-------------  137 (212)
T ss_pred             CCCCCEEEEECCCccHHHHHHHHHh-CEEEEEeCCHHHHHHHHHHHHHCCCCc----eEEEECCccc-------------
Confidence            4678899999999999998888764 479999999999999999999888765    7888888652             


Q ss_pred             cccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEec
Q 026513          148 LSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISG  195 (237)
Q Consensus       148 ~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~  195 (237)
                             .+...++||+|+++.....+   ...+.+.|+|||.+++.-
T Consensus       138 -------~~~~~~~fD~I~~~~~~~~~---~~~l~~~L~~gG~lv~~~  175 (212)
T PRK00312        138 -------GWPAYAPFDRILVTAAAPEI---PRALLEQLKEGGILVAPV  175 (212)
T ss_pred             -------CCCcCCCcCEEEEccCchhh---hHHHHHhcCCCcEEEEEE
Confidence                   12224689999998866544   456788999999999863

>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional

Probab=99.46  E-value=6.4e-13  Score=108.72  Aligned_cols=123  Identities=15%  Similarity=0.184  Sum_probs=90.1

Q ss_pred             ccCCCeEEEEcCcchHHHHHHHHh-C-CCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccc
Q 026513           68 IKGGELFLDYGTGSGILGIAAIKF-G-AAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVV  145 (237)
Q Consensus        68 ~~~~~~vLDlG~G~G~~~~~la~~-~-~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  145 (237)
                      ++++.+|||+|||+|.++..+++. + ..+|+|+|+++ +          ++..+    +.++++|+.+..+-+      
T Consensus        49 ~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~----------~~~~~----v~~i~~D~~~~~~~~------  107 (209)
T PRK11188         49 FKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-M----------DPIVG----VDFLQGDFRDELVLK------  107 (209)
T ss_pred             CCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-c----------cCCCC----cEEEecCCCChHHHH------
Confidence            578889999999999999998876 2 36899999998 1          12232    778899987422100      


Q ss_pred             cccccccccCCCCCCceeEEEEeCCh--------HH------HHHHHHHHhHhcCCCeEEEEeccCCCCHHHHHHHHhhc
Q 026513          146 EDLSSHKIRGISQTEKYDVVIANILL--------NP------LLQLADHIVSYAKPGAVVGISGILSEQLPHIINRYSEF  211 (237)
Q Consensus       146 ~~~~~~~~~~~~~~~~fD~I~~n~~~--------~~------~~~~l~~~~~~L~~gG~liis~~~~~~~~~~~~~~~~~  211 (237)
                       .     +......++||+|++++..        +.      ...+++.+.++|+|||.+++..+......+++..++..
T Consensus       108 -~-----i~~~~~~~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~~~~~~~l~~l~~~  181 (209)
T PRK11188        108 -A-----LLERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQGEGFDEYLREIRSL  181 (209)
T ss_pred             -H-----HHHHhCCCCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEecCcCHHHHHHHHHhC
Confidence             0     0001225689999998732        11      13578999999999999999988899999999988877


Q ss_pred             ccccee
Q 026513          212 LEDILV  217 (237)
Q Consensus       212 ~~~~~~  217 (237)
                      |..+++
T Consensus       182 f~~v~~  187 (209)
T PRK11188        182 FTKVKV  187 (209)
T ss_pred             ceEEEE
Confidence            766655

>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.45  E-value=6.2e-13  Score=112.31  Aligned_cols=102  Identities=17%  Similarity=0.208  Sum_probs=75.6

Q ss_pred             cCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccccc
Q 026513           69 KGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDL  148 (237)
Q Consensus        69 ~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~  148 (237)
                      -.|++|||||||+|+++..++..|+..|+|+|.++...-..+..-...+...   .+..+...+.               
T Consensus       114 L~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~QF~~i~~~lg~~~---~~~~lplgvE---------------  175 (315)
T PF08003_consen  114 LKGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQFEAIKHFLGQDP---PVFELPLGVE---------------  175 (315)
T ss_pred             cCCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHHHHHHHHHhCCCc---cEEEcCcchh---------------
Confidence            3589999999999999999999999999999999988766544333333222   2333222211               


Q ss_pred             ccccccCCCCCCceeEEEEeCChHHHH---HHHHHHhHhcCCCeEEEEe
Q 026513          149 SSHKIRGISQTEKYDVVIANILLNPLL---QLADHIVSYAKPGAVVGIS  194 (237)
Q Consensus       149 ~~~~~~~~~~~~~fD~I~~n~~~~~~~---~~l~~~~~~L~~gG~liis  194 (237)
                            .+...++||+|+|-.++.|.+   ..+..++..|++||.|++.
T Consensus       176 ------~Lp~~~~FDtVF~MGVLYHrr~Pl~~L~~Lk~~L~~gGeLvLE  218 (315)
T PF08003_consen  176 ------DLPNLGAFDTVFSMGVLYHRRSPLDHLKQLKDSLRPGGELVLE  218 (315)
T ss_pred             ------hccccCCcCEEEEeeehhccCCHHHHHHHHHHhhCCCCEEEEE
Confidence                  222256899999999987775   4578899999999999974

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification

>PLN02672 methionine S-methyltransferase

Probab=99.44  E-value=4.8e-12  Score=123.42  Aligned_cols=147  Identities=16%  Similarity=0.159  Sum_probs=103.3

Q ss_pred             CCCceeEEeCcccccCCCCchhHHHHHHHHHhhcc---CCCeEEEEcCcchHHHHHHHHh-CCCeEEEEeCCHHHHHHHH
Q 026513           35 DVQATNIILNPGLAFGSGEHATTKLCLLLLRRLIK---GGELFLDYGTGSGILGIAAIKF-GAAMSVGADIDPQAIKSAH  110 (237)
Q Consensus        35 ~~~~~~~~~~~~~~f~~g~~~~~~~~~~~l~~~~~---~~~~vLDlG~G~G~~~~~la~~-~~~~v~~vD~s~~~i~~a~  110 (237)
                      .....++.+.|+...-   ++.+..+.+.+.....   ++.+|||+|||+|.+++.++.. +..+|+|+|+|+.+++.|+
T Consensus        83 ~F~~l~~~V~p~VLIP---RpeTE~lve~L~~~~~~~~~~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~  159 (1082)
T PLN02672         83 NRKKLTMMEIPSIFIP---EDWSFTFYEGLNRHPDSIFRDKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAW  159 (1082)
T ss_pred             EecCCceeeCCCcccC---chhHHHHHHHHHhcccccCCCCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHH
Confidence            3445677888874433   4666666666543211   2468999999999999999875 5578999999999999999


Q ss_pred             HHHHHcCCCC------------CcceEEeccCccccccccccccccccccccccccCCCC-CCceeEEEEeCCh------
Q 026513          111 QNAALNNIGP------------KKMKLHLVPDRTFTASMNERVDGVVEDLSSHKIRGISQ-TEKYDVVIANILL------  171 (237)
Q Consensus       111 ~~~~~~~~~~------------~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~fD~I~~n~~~------  171 (237)
                      +|+..++++.            ..-++.++++|+++.                    +.. ..+||+|++|||+      
T Consensus       160 ~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~--------------------~~~~~~~fDlIVSNPPYI~~~e~  219 (1082)
T PLN02672        160 INLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGY--------------------CRDNNIELDRIVGCIPQILNPNP  219 (1082)
T ss_pred             HHHHHcCcccccccccccccccccccEEEEECchhhh--------------------ccccCCceEEEEECCCcCCCcch
Confidence            9999876430            011488999998741                    111 2379999999983      


Q ss_pred             --------H---------------------------HHHHHHHHHhHhcCCCeEEEEeccCCCCHHHHH
Q 026513          172 --------N---------------------------PLLQLADHIVSYAKPGAVVGISGILSEQLPHII  205 (237)
Q Consensus       172 --------~---------------------------~~~~~l~~~~~~L~~gG~liis~~~~~~~~~~~  205 (237)
                              .                           .+++++..+.++|+|||.+++. +-..+...+.
T Consensus       220 ~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~lE-iG~~q~~~v~  287 (1082)
T PLN02672        220 EAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIFN-MGGRPGQAVC  287 (1082)
T ss_pred             hhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEEE-ECccHHHHHH
Confidence                    0                           0145678888999999999984 2233344444

>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=99.44  E-value=6.5e-12  Score=98.09  Aligned_cols=115  Identities=20%  Similarity=0.334  Sum_probs=95.7

Q ss_pred             CCeEEEEcCcchHHHHHHHHh--CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccccc
Q 026513           71 GELFLDYGTGSGILGIAAIKF--GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDL  148 (237)
Q Consensus        71 ~~~vLDlG~G~G~~~~~la~~--~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~  148 (237)
                      .+-++|||||+|..+..+++.  +...+.++|++|.+++..++.++.|++.     +..++.|+.+              
T Consensus        44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~-----~~~V~tdl~~--------------  104 (209)
T KOG3191|consen   44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVH-----IDVVRTDLLS--------------  104 (209)
T ss_pred             ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCc-----cceeehhHHh--------------
Confidence            567999999999999888864  5667889999999999999999998865     6778888764              


Q ss_pred             ccccccCCCCCCceeEEEEeCCh------------------------HHHHHHHHHHhHhcCCCeEEEEeccCCCCHHHH
Q 026513          149 SSHKIRGISQTEKYDVVIANILL------------------------NPLLQLADHIVSYAKPGAVVGISGILSEQLPHI  204 (237)
Q Consensus       149 ~~~~~~~~~~~~~fD~I~~n~~~------------------------~~~~~~l~~~~~~L~~gG~liis~~~~~~~~~~  204 (237)
                            .+. .++.|+++.|||+                        ..+.+++..+...|+|.|.+|+-.+.++...++
T Consensus       105 ------~l~-~~~VDvLvfNPPYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N~p~ei  177 (209)
T KOG3191|consen  105 ------GLR-NESVDVLVFNPPYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRANKPKEI  177 (209)
T ss_pred             ------hhc-cCCccEEEECCCcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhhcCHHHH
Confidence                  222 3799999999983                        223567888889999999999999999999999


Q ss_pred             HHHHhhc
Q 026513          205 INRYSEF  211 (237)
Q Consensus       205 ~~~~~~~  211 (237)
                      .+.++..
T Consensus       178 ~k~l~~~  184 (209)
T KOG3191|consen  178 LKILEKK  184 (209)
T ss_pred             HHHHhhc
Confidence            9977654

>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A

Probab=99.44  E-value=3.2e-13  Score=97.67  Aligned_cols=91  Identities=25%  Similarity=0.412  Sum_probs=69.3

Q ss_pred             EEEEcCcchHHHHHHHHh---C-CCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccccc
Q 026513           74 FLDYGTGSGILGIAAIKF---G-AAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDLS  149 (237)
Q Consensus        74 vLDlG~G~G~~~~~la~~---~-~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~  149 (237)
                      |||+|||+|..+..++..   + ..+++|+|+|+.+++.++++....+..     ++++++|+.+..             
T Consensus         1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~-----~~~~~~D~~~l~-------------   62 (101)
T PF13649_consen    1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPK-----VRFVQADARDLP-------------   62 (101)
T ss_dssp             -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTT-----SEEEESCTTCHH-------------
T ss_pred             CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCc-----eEEEECCHhHCc-------------
Confidence            799999999999999865   2 378999999999999999998876652     778899986311             


Q ss_pred             cccccCCCCCCceeEEEEeCC-hHH-----HHHHHHHHhHhcCCCe
Q 026513          150 SHKIRGISQTEKYDVVIANIL-LNP-----LLQLADHIVSYAKPGA  189 (237)
Q Consensus       150 ~~~~~~~~~~~~fD~I~~n~~-~~~-----~~~~l~~~~~~L~~gG  189 (237)
                             ..+++||+|++... +++     ...+++++.++|+|||
T Consensus        63 -------~~~~~~D~v~~~~~~~~~~~~~~~~~ll~~~~~~l~pgG  101 (101)
T PF13649_consen   63 -------FSDGKFDLVVCSGLSLHHLSPEELEALLRRIARLLRPGG  101 (101)
T ss_dssp             -------HHSSSEEEEEE-TTGGGGSSHHHHHHHHHHHHHTEEEEE
T ss_pred             -------ccCCCeeEEEEcCCccCCCCHHHHHHHHHHHHHHhCCCC
Confidence                   12569999999443 443     3578999999999998

>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2

Probab=99.44  E-value=2.9e-13  Score=110.46  Aligned_cols=108  Identities=22%  Similarity=0.326  Sum_probs=81.7

Q ss_pred             HHHHHHHHhhccCCCeEEEEcCcchHHHHHHHHh-C-CCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccc
Q 026513           58 KLCLLLLRRLIKGGELFLDYGTGSGILGIAAIKF-G-AAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTA  135 (237)
Q Consensus        58 ~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~la~~-~-~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~  135 (237)
                      ..+++.++  +++|.+|||||||+|+++..++.. + ..+|+++|+++..++.|++++...+..+    +.++.+|...+
T Consensus        62 a~~l~~L~--l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~n----v~~~~gdg~~g  135 (209)
T PF01135_consen   62 ARMLEALD--LKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDN----VEVVVGDGSEG  135 (209)
T ss_dssp             HHHHHHTT--C-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHS----EEEEES-GGGT
T ss_pred             HHHHHHHh--cCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCc----eeEEEcchhhc
Confidence            44444443  689999999999999999999976 3 3469999999999999999999988876    88999997642


Q ss_pred             cccccccccccccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEe
Q 026513          136 SMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGIS  194 (237)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis  194 (237)
                                          +....+||.|+++.....   +-..+.+.|++||+|++-
T Consensus       136 --------------------~~~~apfD~I~v~~a~~~---ip~~l~~qL~~gGrLV~p  171 (209)
T PF01135_consen  136 --------------------WPEEAPFDRIIVTAAVPE---IPEALLEQLKPGGRLVAP  171 (209)
T ss_dssp             --------------------TGGG-SEEEEEESSBBSS-----HHHHHTEEEEEEEEEE
T ss_pred             --------------------cccCCCcCEEEEeeccch---HHHHHHHhcCCCcEEEEE
Confidence                                223568999999886643   335578889999999984

1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....

>TIGR02072 BioC biotin biosynthesis protein BioC

Probab=99.44  E-value=3.3e-12  Score=105.70  Aligned_cols=108  Identities=19%  Similarity=0.234  Sum_probs=83.5

Q ss_pred             CCCeEEEEcCcchHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccccc
Q 026513           70 GGELFLDYGTGSGILGIAAIKF-GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDL  148 (237)
Q Consensus        70 ~~~~vLDlG~G~G~~~~~la~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~  148 (237)
                      .+.+|||+|||+|.++..+++. +..+++++|+++.+++.+++....        ++.++.+|..+              
T Consensus        34 ~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~--------~~~~~~~d~~~--------------   91 (240)
T TIGR02072        34 IPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLSE--------NVQFICGDAEK--------------   91 (240)
T ss_pred             CCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcCC--------CCeEEecchhh--------------
Confidence            3568999999999999998876 356799999999999988876541        25677777653              


Q ss_pred             ccccccCCCCCCceeEEEEeCChHHH---HHHHHHHhHhcCCCeEEEEeccCCCCHHHHH
Q 026513          149 SSHKIRGISQTEKYDVVIANILLNPL---LQLADHIVSYAKPGAVVGISGILSEQLPHII  205 (237)
Q Consensus       149 ~~~~~~~~~~~~~fD~I~~n~~~~~~---~~~l~~~~~~L~~gG~liis~~~~~~~~~~~  205 (237)
                            ...++++||+|+++.++++.   ..++..+.++|+|||.++++.+......++.
T Consensus        92 ------~~~~~~~fD~vi~~~~l~~~~~~~~~l~~~~~~L~~~G~l~~~~~~~~~~~~~~  145 (240)
T TIGR02072        92 ------LPLEDSSFDLIVSNLALQWCDDLSQALSELARVLKPGGLLAFSTFGPGTLHELR  145 (240)
T ss_pred             ------CCCCCCceeEEEEhhhhhhccCHHHHHHHHHHHcCCCcEEEEEeCCccCHHHHH
Confidence                  11235789999999887655   4679999999999999999876555444433

This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.

>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional

Probab=99.43  E-value=1.5e-12  Score=114.54  Aligned_cols=107  Identities=13%  Similarity=0.180  Sum_probs=87.5

Q ss_pred             cCCCeEEEEcCcchHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccc
Q 026513           69 KGGELFLDYGTGSGILGIAAIKF-GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVED  147 (237)
Q Consensus        69 ~~~~~vLDlG~G~G~~~~~la~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  147 (237)
                      ..+..+||||||+|.++..+|+. +...++|+|+++.+++.|.+++..+++.+    +.++++|+...            
T Consensus       121 ~~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~N----V~~i~~DA~~l------------  184 (390)
T PRK14121        121 NQEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKN----LLIINYDARLL------------  184 (390)
T ss_pred             CCCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCc----EEEEECCHHHh------------
Confidence            34668999999999999999864 67789999999999999999999999886    88899997521            


Q ss_pred             cccccccCCCCCCceeEEEEeCChHH---------HHHHHHHHhHhcCCCeEEEEeccC
Q 026513          148 LSSHKIRGISQTEKYDVVIANILLNP---------LLQLADHIVSYAKPGAVVGISGIL  197 (237)
Q Consensus       148 ~~~~~~~~~~~~~~fD~I~~n~~~~~---------~~~~l~~~~~~L~~gG~liis~~~  197 (237)
                            ....+++++|.|+++.|..+         ...++..+.++|+|||.+.+..-.
T Consensus       185 ------l~~~~~~s~D~I~lnFPdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD~  237 (390)
T PRK14121        185 ------LELLPSNSVEKIFVHFPVPWDKKPHRRVISEDFLNEALRVLKPGGTLELRTDS  237 (390)
T ss_pred             ------hhhCCCCceeEEEEeCCCCccccchhhccHHHHHHHHHHHcCCCcEEEEEEEC
Confidence                  12234679999999887432         246899999999999999996443

>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.43  E-value=2.9e-14  Score=102.66  Aligned_cols=95  Identities=27%  Similarity=0.357  Sum_probs=60.2

Q ss_pred             EEEcCcchHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccccccccc
Q 026513           75 LDYGTGSGILGIAAIKF-GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDLSSHKI  153 (237)
Q Consensus        75 LDlG~G~G~~~~~la~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~  153 (237)
                      ||+|||+|.++..+... +..+++++|+|+.+++.|++++......+ ...+.+...+..                    
T Consensus         1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~-~~~~~~~~~~~~--------------------   59 (99)
T PF08242_consen    1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDN-FERLRFDVLDLF--------------------   59 (99)
T ss_dssp             -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT----EEEEE--SSS----------------------
T ss_pred             CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcc-eeEEEeecCChh--------------------
Confidence            79999999999988765 77889999999999999999888766432 111333333322                    


Q ss_pred             cCCCCCCceeEEEEeCChHHH---HHHHHHHhHhcCCCeEE
Q 026513          154 RGISQTEKYDVVIANILLNPL---LQLADHIVSYAKPGAVV  191 (237)
Q Consensus       154 ~~~~~~~~fD~I~~n~~~~~~---~~~l~~~~~~L~~gG~l  191 (237)
                       .....++||+|++..+++++   ..+++++.++|+|||+|
T Consensus        60 -~~~~~~~fD~V~~~~vl~~l~~~~~~l~~~~~~L~pgG~l   99 (99)
T PF08242_consen   60 -DYDPPESFDLVVASNVLHHLEDIEAVLRNIYRLLKPGGIL   99 (99)
T ss_dssp             --CCC----SEEEEE-TTS--S-HHHHHHHHTTT-TSS-EE
T ss_pred             -hcccccccceehhhhhHhhhhhHHHHHHHHHHHcCCCCCC
Confidence             11122599999999988776   46799999999999986

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.

>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]

Probab=99.43  E-value=2.6e-12  Score=105.77  Aligned_cols=125  Identities=23%  Similarity=0.254  Sum_probs=103.4

Q ss_pred             ccCCCeEEEEcCcchHHHHHHHHh--CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccc
Q 026513           68 IKGGELFLDYGTGSGILGIAAIKF--GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVV  145 (237)
Q Consensus        68 ~~~~~~vLDlG~G~G~~~~~la~~--~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  145 (237)
                      +.+|.+|+|.|+|+|.++.++++.  +..+|+..|+.++.++.|++|++..++.+   ++.+..+|+.+.          
T Consensus        92 i~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d---~v~~~~~Dv~~~----------  158 (256)
T COG2519          92 ISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGD---RVTLKLGDVREG----------  158 (256)
T ss_pred             CCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhcccc---ceEEEecccccc----------
Confidence            568999999999999999999964  55899999999999999999999988887   377778888742          


Q ss_pred             cccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEeccCCCCHHHHHHHHhhc-cccceee
Q 026513          146 EDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILSEQLPHIINRYSEF-LEDILVS  218 (237)
Q Consensus       146 ~~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~~~~~~~~~~~~~~~~~-~~~~~~~  218 (237)
                                 .....||.|+.+.|-.+  ++++++...|+|||.+++-.-..++.......+++. |..++..
T Consensus       159 -----------~~~~~vDav~LDmp~PW--~~le~~~~~Lkpgg~~~~y~P~veQv~kt~~~l~~~g~~~ie~~  219 (256)
T COG2519         159 -----------IDEEDVDAVFLDLPDPW--NVLEHVSDALKPGGVVVVYSPTVEQVEKTVEALRERGFVDIEAV  219 (256)
T ss_pred             -----------ccccccCEEEEcCCChH--HHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHhcCccchhhh
Confidence                       22348999999987653  678999999999999999776777788888888776 6555543

>PLN02476 O-methyltransferase

Probab=99.43  E-value=1e-11  Score=105.05  Aligned_cols=121  Identities=13%  Similarity=0.212  Sum_probs=93.5

Q ss_pred             HHHHHHHHhhccCCCeEEEEcCcchHHHHHHHHh--CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccc
Q 026513           58 KLCLLLLRRLIKGGELFLDYGTGSGILGIAAIKF--GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTA  135 (237)
Q Consensus        58 ~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~la~~--~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~  135 (237)
                      ..++..+.+. .+.++|||+|||+|+.++.++..  ...+++++|.+++.++.|+++++..|+.+   +++++.+|..+.
T Consensus       107 g~lL~~L~~~-~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~---~I~li~GdA~e~  182 (278)
T PLN02476        107 AQLLAMLVQI-LGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSH---KVNVKHGLAAES  182 (278)
T ss_pred             HHHHHHHHHh-cCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCC---cEEEEEcCHHHH
Confidence            3334444333 35679999999999999999863  35679999999999999999999999975   588889987631


Q ss_pred             cccccccccccccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEecc
Q 026513          136 SMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGI  196 (237)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~~  196 (237)
                      .         +.+     ..-...++||+||.+..-..+..+++.+.++|+|||.+++...
T Consensus       183 L---------~~l-----~~~~~~~~FD~VFIDa~K~~Y~~y~e~~l~lL~~GGvIV~DNv  229 (278)
T PLN02476        183 L---------KSM-----IQNGEGSSYDFAFVDADKRMYQDYFELLLQLVRVGGVIVMDNV  229 (278)
T ss_pred             H---------HHH-----HhcccCCCCCEEEECCCHHHHHHHHHHHHHhcCCCcEEEEecC
Confidence            1         100     0000135899999999988899999999999999999998644

>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]

Probab=99.43  E-value=2.4e-13  Score=108.89  Aligned_cols=96  Identities=22%  Similarity=0.254  Sum_probs=82.0

Q ss_pred             cCCCeEEEEcCcchHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccc
Q 026513           69 KGGELFLDYGTGSGILGIAAIKF-GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVED  147 (237)
Q Consensus        69 ~~~~~vLDlG~G~G~~~~~la~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  147 (237)
                      .+..+|.|+|||+|..+..++++ +...++|+|.|+.|++.|++.+.     +    +.|..+|+.              
T Consensus        29 ~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rlp-----~----~~f~~aDl~--------------   85 (257)
T COG4106          29 ERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRLP-----D----ATFEEADLR--------------   85 (257)
T ss_pred             cccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhCC-----C----CceecccHh--------------
Confidence            34568999999999999999864 88999999999999999976532     2    667788875              


Q ss_pred             cccccccCCCCCCceeEEEEeCChHHHH---HHHHHHhHhcCCCeEEEEe
Q 026513          148 LSSHKIRGISQTEKYDVVIANILLNPLL---QLADHIVSYAKPGAVVGIS  194 (237)
Q Consensus       148 ~~~~~~~~~~~~~~fD~I~~n~~~~~~~---~~l~~~~~~L~~gG~liis  194 (237)
                             .+.+..+.|++++|.+++++.   +++.++...|.|||.|-+.
T Consensus        86 -------~w~p~~~~dllfaNAvlqWlpdH~~ll~rL~~~L~Pgg~LAVQ  128 (257)
T COG4106          86 -------TWKPEQPTDLLFANAVLQWLPDHPELLPRLVSQLAPGGVLAVQ  128 (257)
T ss_pred             -------hcCCCCccchhhhhhhhhhccccHHHHHHHHHhhCCCceEEEE
Confidence                   677788999999999998774   6889999999999999985

>PRK14904 16S rRNA methyltransferase B; Provisional

Probab=99.43  E-value=5.1e-12  Score=114.55  Aligned_cols=104  Identities=19%  Similarity=0.217  Sum_probs=84.7

Q ss_pred             ccCCCeEEEEcCcchHHHHHHHHh--CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccc
Q 026513           68 IKGGELFLDYGTGSGILGIAAIKF--GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVV  145 (237)
Q Consensus        68 ~~~~~~vLDlG~G~G~~~~~la~~--~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  145 (237)
                      ..+|.+|||+|||+|..+..++..  +..+|+++|+|+.+++.+++++...++.+    +.++++|..+           
T Consensus       248 ~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~----v~~~~~Da~~-----------  312 (445)
T PRK14904        248 PQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITI----IETIEGDARS-----------  312 (445)
T ss_pred             CCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCe----EEEEeCcccc-----------
Confidence            457889999999999999888764  34689999999999999999999988864    8888888762           


Q ss_pred             cccccccccCCCCCCceeEEEEeCChH-------------------------HHHHHHHHHhHhcCCCeEEEEecc
Q 026513          146 EDLSSHKIRGISQTEKYDVVIANILLN-------------------------PLLQLADHIVSYAKPGAVVGISGI  196 (237)
Q Consensus       146 ~~~~~~~~~~~~~~~~fD~I~~n~~~~-------------------------~~~~~l~~~~~~L~~gG~liis~~  196 (237)
                                +.+..+||+|++++|..                         ....++..+.++|+|||++++++.
T Consensus       313 ----------~~~~~~fD~Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystc  378 (445)
T PRK14904        313 ----------FSPEEQPDAILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATC  378 (445)
T ss_pred             ----------cccCCCCCEEEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence                      22346899999988731                         123579999999999999999844

>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH

Probab=99.43  E-value=5.1e-13  Score=106.93  Aligned_cols=127  Identities=20%  Similarity=0.256  Sum_probs=90.8

Q ss_pred             CCCchhHHHHHHHHHhhc----cCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEE
Q 026513           51 SGEHATTKLCLLLLRRLI----KGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLH  126 (237)
Q Consensus        51 ~g~~~~~~~~~~~l~~~~----~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~  126 (237)
                      .+.+|++..+.+.+-+.+    -.|.++||+.||+|.+++.+..+|+.+|+.+|.++.+++..++|+...++.+   ++.
T Consensus        19 ~~~RPT~drvrealFniL~~~~~~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~~l~~~~---~~~   95 (183)
T PF03602_consen   19 DNTRPTTDRVREALFNILQPRNLEGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLEKLGLED---KIR   95 (183)
T ss_dssp             -TS-SSSHHHHHHHHHHHHCH-HTT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHT-GG---GEE
T ss_pred             CCcCCCcHHHHHHHHHHhcccccCCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHhCCCc---cee
Confidence            344777777777775543    3689999999999999999999999999999999999999999999888775   477


Q ss_pred             eccCccccccccccccccccccccccccCCCCCCceeEEEEeCChHH---HHHHHHHHh--HhcCCCeEEEEecc
Q 026513          127 LVPDRTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLNP---LLQLADHIV--SYAKPGAVVGISGI  196 (237)
Q Consensus       127 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~~~---~~~~l~~~~--~~L~~gG~liis~~  196 (237)
                      ++..|.......                ......+||+|+++||+..   +..++..+.  .+|+++|.+++-.-
T Consensus        96 v~~~d~~~~l~~----------------~~~~~~~fDiIflDPPY~~~~~~~~~l~~l~~~~~l~~~~~ii~E~~  154 (183)
T PF03602_consen   96 VIKGDAFKFLLK----------------LAKKGEKFDIIFLDPPYAKGLYYEELLELLAENNLLNEDGLIIIEHS  154 (183)
T ss_dssp             EEESSHHHHHHH----------------HHHCTS-EEEEEE--STTSCHHHHHHHHHHHHTTSEEEEEEEEEEEE
T ss_pred             eeccCHHHHHHh----------------hcccCCCceEEEECCCcccchHHHHHHHHHHHCCCCCCCEEEEEEec
Confidence            888886532100                1112579999999999732   356777776  78999999999643

They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.

>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase

Probab=99.42  E-value=2.3e-12  Score=105.09  Aligned_cols=99  Identities=13%  Similarity=0.179  Sum_probs=75.2

Q ss_pred             ccCCCeEEEEcCcchHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccc
Q 026513           68 IKGGELFLDYGTGSGILGIAAIKF-GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVE  146 (237)
Q Consensus        68 ~~~~~~vLDlG~G~G~~~~~la~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  146 (237)
                      +.++.+|||+|||+|.++..++.. +..+++|+|+|+.+++.|+++..         .+.+.++|..+            
T Consensus        41 ~~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~---------~~~~~~~d~~~------------   99 (204)
T TIGR03587        41 LPKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLP---------NINIIQGSLFD------------   99 (204)
T ss_pred             cCCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCC---------CCcEEEeeccC------------
Confidence            456789999999999999999875 66789999999999999987642         14455677552            


Q ss_pred             ccccccccCCCCCCceeEEEEeCChHHH-----HHHHHHHhHhcCCCeEEEEeccCC
Q 026513          147 DLSSHKIRGISQTEKYDVVIANILLNPL-----LQLADHIVSYAKPGAVVGISGILS  198 (237)
Q Consensus       147 ~~~~~~~~~~~~~~~fD~I~~n~~~~~~-----~~~l~~~~~~L~~gG~liis~~~~  198 (237)
                               ..++++||+|+++.+++++     .++++++.+.+  +++++++.+..
T Consensus       100 ---------~~~~~sfD~V~~~~vL~hl~p~~~~~~l~el~r~~--~~~v~i~e~~~  145 (204)
T TIGR03587       100 ---------PFKDNFFDLVLTKGVLIHINPDNLPTAYRELYRCS--NRYILIAEYYN  145 (204)
T ss_pred             ---------CCCCCCEEEEEECChhhhCCHHHHHHHHHHHHhhc--CcEEEEEEeeC
Confidence                     2236799999999987654     45677777765  56777766543

Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme

>PRK14902 16S rRNA methyltransferase B; Provisional

Probab=99.42  E-value=8.7e-12  Score=113.03  Aligned_cols=105  Identities=19%  Similarity=0.236  Sum_probs=84.8

Q ss_pred             ccCCCeEEEEcCcchHHHHHHHHh--CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccc
Q 026513           68 IKGGELFLDYGTGSGILGIAAIKF--GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVV  145 (237)
Q Consensus        68 ~~~~~~vLDlG~G~G~~~~~la~~--~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  145 (237)
                      +.++.+|||+|||+|..+..++..  +..+|+++|+++.+++.+++|+...++.+    +.++++|+.+..         
T Consensus       248 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~----v~~~~~D~~~~~---------  314 (444)
T PRK14902        248 PKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTN----IETKALDARKVH---------  314 (444)
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCe----EEEEeCCccccc---------
Confidence            357889999999999999998864  45789999999999999999999998874    888899876310         


Q ss_pred             cccccccccCCCCCCceeEEEEeCChH-------------------------HHHHHHHHHhHhcCCCeEEEEec
Q 026513          146 EDLSSHKIRGISQTEKYDVVIANILLN-------------------------PLLQLADHIVSYAKPGAVVGISG  195 (237)
Q Consensus       146 ~~~~~~~~~~~~~~~~fD~I~~n~~~~-------------------------~~~~~l~~~~~~L~~gG~liis~  195 (237)
                               ... .++||+|++|+|..                         ...+++..+.++|+|||.+++++
T Consensus       315 ---------~~~-~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvyst  379 (444)
T PRK14902        315 ---------EKF-AEKFDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYST  379 (444)
T ss_pred             ---------chh-cccCCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEc
Confidence                     111 26899999998731                         12457899999999999999873

>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]

Probab=99.42  E-value=3.7e-12  Score=104.52  Aligned_cols=125  Identities=13%  Similarity=0.172  Sum_probs=97.4

Q ss_pred             cCCCeEEEEcCcchHHHHHHHHh-CC------CeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccc
Q 026513           69 KGGELFLDYGTGSGILGIAAIKF-GA------AMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERV  141 (237)
Q Consensus        69 ~~~~~vLDlG~G~G~~~~~la~~-~~------~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~  141 (237)
                      .++.++||++||||-++..+.++ +.      .+|+.+|++|.|++.+++.+.+.++..+. ++.++++|+.+       
T Consensus        99 ~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~-~~~w~~~dAE~-------  170 (296)
T KOG1540|consen   99 GKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASS-RVEWVEGDAED-------  170 (296)
T ss_pred             CCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCC-ceEEEeCCccc-------
Confidence            45789999999999999887754 33      78999999999999999999877776533 37888999863       


Q ss_pred             cccccccccccccCCCCCCceeEEEEeCCh---HHHHHHHHHHhHhcCCCeEEEEeccCCCCHHHHHHHHhhc-ccc
Q 026513          142 DGVVEDLSSHKIRGISQTEKYDVVIANILL---NPLLQLADHIVSYAKPGAVVGISGILSEQLPHIINRYSEF-LED  214 (237)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~---~~~~~~l~~~~~~L~~gG~liis~~~~~~~~~~~~~~~~~-~~~  214 (237)
                                   ..+++.+||...+...+   .+..+.+++++++|||||++++-.|-....+.+...+..+ |..
T Consensus       171 -------------LpFdd~s~D~yTiafGIRN~th~~k~l~EAYRVLKpGGrf~cLeFskv~~~~l~~fy~~ysf~V  234 (296)
T KOG1540|consen  171 -------------LPFDDDSFDAYTIAFGIRNVTHIQKALREAYRVLKPGGRFSCLEFSKVENEPLKWFYDQYSFDV  234 (296)
T ss_pred             -------------CCCCCCcceeEEEecceecCCCHHHHHHHHHHhcCCCcEEEEEEccccccHHHHHHHHhhhhhh
Confidence                         23457899999887654   4456789999999999999997766555556677777766 443

>PRK14903 16S rRNA methyltransferase B; Provisional

Probab=99.42  E-value=2.5e-12  Score=115.94  Aligned_cols=118  Identities=13%  Similarity=0.194  Sum_probs=90.2

Q ss_pred             ccCCCeEEEEcCcchHHHHHHHHh--CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccc
Q 026513           68 IKGGELFLDYGTGSGILGIAAIKF--GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVV  145 (237)
Q Consensus        68 ~~~~~~vLDlG~G~G~~~~~la~~--~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  145 (237)
                      +.+|.+|||+|||+|..+..++..  +..+|+++|+++.+++.+++++...++.+    +.++.+|..+..         
T Consensus       235 ~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~----v~~~~~Da~~l~---------  301 (431)
T PRK14903        235 LEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSS----IEIKIADAERLT---------  301 (431)
T ss_pred             CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCe----EEEEECchhhhh---------
Confidence            467889999999999999988865  35789999999999999999999988864    778888875210         


Q ss_pred             cccccccccCCCCCCceeEEEEeCChH-------------------------HHHHHHHHHhHhcCCCeEEEEe-ccC-C
Q 026513          146 EDLSSHKIRGISQTEKYDVVIANILLN-------------------------PLLQLADHIVSYAKPGAVVGIS-GIL-S  198 (237)
Q Consensus       146 ~~~~~~~~~~~~~~~~fD~I~~n~~~~-------------------------~~~~~l~~~~~~L~~gG~liis-~~~-~  198 (237)
                               . ...++||.|++|+|..                         ...+++..+.++|+|||.++++ |.. .
T Consensus       302 ---------~-~~~~~fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~~  371 (431)
T PRK14903        302 ---------E-YVQDTFDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTVTK  371 (431)
T ss_pred             ---------h-hhhccCCEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCCh
Confidence                     1 1246899999998841                         2246789999999999999997 333 3


Q ss_pred             CCHHHHHHHH
Q 026513          199 EQLPHIINRY  208 (237)
Q Consensus       199 ~~~~~~~~~~  208 (237)
                      ++..+....+
T Consensus       372 eEne~vv~~f  381 (431)
T PRK14903        372 EENTEVVKRF  381 (431)
T ss_pred             hhCHHHHHHH
Confidence            3334444433

>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed

Probab=99.41  E-value=1e-11  Score=102.85  Aligned_cols=105  Identities=19%  Similarity=0.218  Sum_probs=83.0

Q ss_pred             cCCCeEEEEcCcchHHHHHHHHhC--CCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccc
Q 026513           69 KGGELFLDYGTGSGILGIAAIKFG--AAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVE  146 (237)
Q Consensus        69 ~~~~~vLDlG~G~G~~~~~la~~~--~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  146 (237)
                      .++.+|||+|||+|.++..++...  ..+++++|+++.+++.+++++..+++..   .+.++.+|..+.           
T Consensus        50 ~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~---~~~~~~~d~~~~-----------  115 (239)
T PRK00216         50 RPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSG---NVEFVQGDAEAL-----------  115 (239)
T ss_pred             CCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhccccccc---CeEEEecccccC-----------
Confidence            467899999999999999988764  4889999999999999999987654433   367778887531           


Q ss_pred             ccccccccCCCCCCceeEEEEeCChHH---HHHHHHHHhHhcCCCeEEEEecc
Q 026513          147 DLSSHKIRGISQTEKYDVVIANILLNP---LLQLADHIVSYAKPGAVVGISGI  196 (237)
Q Consensus       147 ~~~~~~~~~~~~~~~fD~I~~n~~~~~---~~~~l~~~~~~L~~gG~liis~~  196 (237)
                               ....++||+|+++..+++   ...++..+.++|+|||.+++.++
T Consensus       116 ---------~~~~~~~D~I~~~~~l~~~~~~~~~l~~~~~~L~~gG~li~~~~  159 (239)
T PRK00216        116 ---------PFPDNSFDAVTIAFGLRNVPDIDKALREMYRVLKPGGRLVILEF  159 (239)
T ss_pred             ---------CCCCCCccEEEEecccccCCCHHHHHHHHHHhccCCcEEEEEEe
Confidence                     122468999998776543   35778999999999999998654

>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=99.41  E-value=2e-12  Score=101.84  Aligned_cols=89  Identities=30%  Similarity=0.402  Sum_probs=72.8

Q ss_pred             ccCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccc
Q 026513           68 IKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVED  147 (237)
Q Consensus        68 ~~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  147 (237)
                      .-.|++|+|+|||||.+++.++-.|+.+|+|+|+++++++.+++|+.... .    ++.++.+|+.+             
T Consensus        43 ~l~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~l~-g----~v~f~~~dv~~-------------  104 (198)
T COG2263          43 DLEGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEELL-G----DVEFVVADVSD-------------  104 (198)
T ss_pred             CcCCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHHhhC-C----ceEEEEcchhh-------------
Confidence            34578999999999999999999999999999999999999999998833 3    38899999863             


Q ss_pred             cccccccCCCCCCceeEEEEeCChHHHH-----HHHHHHhHh
Q 026513          148 LSSHKIRGISQTEKYDVVIANILLNPLL-----QLADHIVSY  184 (237)
Q Consensus       148 ~~~~~~~~~~~~~~fD~I~~n~~~~~~~-----~~l~~~~~~  184 (237)
                              +  ..++|.++.|||+....     .++..+.+.
T Consensus       105 --------~--~~~~dtvimNPPFG~~~rhaDr~Fl~~Ale~  136 (198)
T COG2263         105 --------F--RGKFDTVIMNPPFGSQRRHADRPFLLKALEI  136 (198)
T ss_pred             --------c--CCccceEEECCCCccccccCCHHHHHHHHHh
Confidence                    2  57899999999975442     455555543

>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB

Probab=99.41  E-value=3.7e-12  Score=114.83  Aligned_cols=108  Identities=17%  Similarity=0.138  Sum_probs=84.1

Q ss_pred             ccCCCeEEEEcCcchHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccc
Q 026513           68 IKGGELFLDYGTGSGILGIAAIKF-GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVE  146 (237)
Q Consensus        68 ~~~~~~vLDlG~G~G~~~~~la~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  146 (237)
                      +.+|.+|||+|||+|..+..+++. +..+|+++|+++.+++.+++|+...++..   ++.+..+|.....          
T Consensus       236 ~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~---~v~~~~~d~~~~~----------  302 (426)
T TIGR00563       236 PQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTI---KAETKDGDGRGPS----------  302 (426)
T ss_pred             CCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCe---EEEEecccccccc----------
Confidence            457899999999999999998875 45789999999999999999999888752   4555667654210          


Q ss_pred             ccccccccCCCCCCceeEEEEeCChH-------------------------HHHHHHHHHhHhcCCCeEEEEecc
Q 026513          147 DLSSHKIRGISQTEKYDVVIANILLN-------------------------PLLQLADHIVSYAKPGAVVGISGI  196 (237)
Q Consensus       147 ~~~~~~~~~~~~~~~fD~I~~n~~~~-------------------------~~~~~l~~~~~~L~~gG~liis~~  196 (237)
                              .....++||.|++++|..                         ...+++..+.++|+|||.|++++.
T Consensus       303 --------~~~~~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystc  369 (426)
T TIGR00563       303 --------QWAENEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATC  369 (426)
T ss_pred             --------ccccccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence                    111246899999988621                         134689999999999999999843

The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.

>PHA03412 putative methyltransferase; Provisional

Probab=99.40  E-value=3.6e-12  Score=104.83  Aligned_cols=92  Identities=14%  Similarity=0.205  Sum_probs=69.9

Q ss_pred             CCCeEEEEcCcchHHHHHHHHh----CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccc
Q 026513           70 GGELFLDYGTGSGILGIAAIKF----GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVV  145 (237)
Q Consensus        70 ~~~~vLDlG~G~G~~~~~la~~----~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  145 (237)
                      .+.+|||+|||+|.+++.+++.    +..+|+++|+++.+++.|+++..         .+.++.+|+..           
T Consensus        49 ~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~---------~~~~~~~D~~~-----------  108 (241)
T PHA03412         49 TSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVP---------EATWINADALT-----------  108 (241)
T ss_pred             CCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhcc---------CCEEEEcchhc-----------
Confidence            3679999999999999988864    34589999999999999998753         15577788652           


Q ss_pred             cccccccccCCCCCCceeEEEEeCChHH---------------HHHHHHHHhHhcCCCeEE
Q 026513          146 EDLSSHKIRGISQTEKYDVVIANILLNP---------------LLQLADHIVSYAKPGAVV  191 (237)
Q Consensus       146 ~~~~~~~~~~~~~~~~fD~I~~n~~~~~---------------~~~~l~~~~~~L~~gG~l  191 (237)
                                ...+.+||+||+|||+..               ...++..+.+++++|+.+
T Consensus       109 ----------~~~~~~FDlIIsNPPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~I  159 (241)
T PHA03412        109 ----------TEFDTLFDMAISNPPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTFI  159 (241)
T ss_pred             ----------ccccCCccEEEECCCCCCccccccCCcccccHHHHHHHHHHHHHcCCCEEE
Confidence                      112468999999999631               235788888877777763

>PRK04457 spermidine synthase; Provisional

Probab=99.40  E-value=5.5e-12  Score=106.63  Aligned_cols=136  Identities=15%  Similarity=0.155  Sum_probs=96.4

Q ss_pred             hhHHHHHHHHHhhccCCCeEEEEcCcchHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccc
Q 026513           55 ATTKLCLLLLRRLIKGGELFLDYGTGSGILGIAAIKF-GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTF  133 (237)
Q Consensus        55 ~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~la~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~  133 (237)
                      +.++.++..+.. .+++.+|||+|||+|.++..+++. +..+++++|+++.+++.|++++...+...   +++++.+|..
T Consensus        52 ~y~~~m~~~l~~-~~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~---rv~v~~~Da~  127 (262)
T PRK04457         52 AYTRAMMGFLLF-NPRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGE---RFEVIEADGA  127 (262)
T ss_pred             HHHHHHHHHHhc-CCCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCC---ceEEEECCHH
Confidence            455555544432 245678999999999999988764 67889999999999999999876543322   4788889976


Q ss_pred             cccccccccccccccccccccCCCCCCceeEEEEeCChH-------HHHHHHHHHhHhcCCCeEEEEeccCC-CCHHHHH
Q 026513          134 TASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLN-------PLLQLADHIVSYAKPGAVVGISGILS-EQLPHII  205 (237)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~~-------~~~~~l~~~~~~L~~gG~liis~~~~-~~~~~~~  205 (237)
                      +..                 ..  ..++||+|++|..-.       ...++++.+.+.|+|||++++..+.. .....+.
T Consensus       128 ~~l-----------------~~--~~~~yD~I~~D~~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~~~~~~~~~~~l  188 (262)
T PRK04457        128 EYI-----------------AV--HRHSTDVILVDGFDGEGIIDALCTQPFFDDCRNALSSDGIFVVNLWSRDKRYDRYL  188 (262)
T ss_pred             HHH-----------------Hh--CCCCCCEEEEeCCCCCCCccccCcHHHHHHHHHhcCCCcEEEEEcCCCchhHHHHH
Confidence            311                 01  135899999975211       12588999999999999999964432 2345566


Q ss_pred             HHHhhccc
Q 026513          206 NRYSEFLE  213 (237)
Q Consensus       206 ~~~~~~~~  213 (237)
                      ..++..|.
T Consensus       189 ~~l~~~F~  196 (262)
T PRK04457        189 ERLESSFE  196 (262)
T ss_pred             HHHHHhcC
Confidence            66666564

>TIGR00417 speE spermidine synthase

Probab=99.40  E-value=1.5e-11  Score=104.51  Aligned_cols=143  Identities=15%  Similarity=0.100  Sum_probs=95.7

Q ss_pred             cCCCeEEEEcCcchHHHHHHHHhC-CCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccc
Q 026513           69 KGGELFLDYGTGSGILGIAAIKFG-AAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVED  147 (237)
Q Consensus        69 ~~~~~vLDlG~G~G~~~~~la~~~-~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  147 (237)
                      +.+++||++|||+|.++..+++.+ ..+++++|+++.+++.+++.+...+.....-+++++.+|..+..           
T Consensus        71 ~~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l-----------  139 (270)
T TIGR00417        71 PNPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFL-----------  139 (270)
T ss_pred             CCCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHH-----------
Confidence            345699999999999998887764 67899999999999999998754321111114666677765211           


Q ss_pred             cccccccCCCCCCceeEEEEeCCh--H---H--HHHHHHHHhHhcCCCeEEEEecc-CCCCH---HHHHHHHhhccccce
Q 026513          148 LSSHKIRGISQTEKYDVVIANILL--N---P--LLQLADHIVSYAKPGAVVGISGI-LSEQL---PHIINRYSEFLEDIL  216 (237)
Q Consensus       148 ~~~~~~~~~~~~~~fD~I~~n~~~--~---~--~~~~l~~~~~~L~~gG~liis~~-~~~~~---~~~~~~~~~~~~~~~  216 (237)
                            ..  ..++||+|+++.+.  .   .  ..++++.+.+.|+|||.+++..- ..-..   ..+...++..|..+.
T Consensus       140 ------~~--~~~~yDvIi~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~tl~~~F~~v~  211 (270)
T TIGR00417       140 ------AD--TENTFDVIIVDSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQSESPWIQLELITDLKRDVKEAFPITE  211 (270)
T ss_pred             ------Hh--CCCCccEEEEeCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEcCCCcccCHHHHHHHHHHHHHHCCCeE
Confidence                  01  14689999998752  1   1  35778999999999999998521 11112   233333444454443


Q ss_pred             ee-------ecCCEEEEEEEE
Q 026513          217 VS-------EMDDWTCVSGKK  230 (237)
Q Consensus       217 ~~-------~~~~w~~~~~~~  230 (237)
                      ..       ..+.|..++++|
T Consensus       212 ~~~~~vp~~~~g~~~~~~as~  232 (270)
T TIGR00417       212 YYTANIPTYPSGLWTFTIGSK  232 (270)
T ss_pred             EEEEEcCccccchhEEEEEEC
Confidence            31       246799999987

the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.

>PLN02366 spermidine synthase

Probab=99.39  E-value=2.4e-11  Score=104.73  Aligned_cols=145  Identities=15%  Similarity=0.102  Sum_probs=99.6

Q ss_pred             cCCCeEEEEcCcchHHHHHHHHhC-CCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccc
Q 026513           69 KGGELFLDYGTGSGILGIAAIKFG-AAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVED  147 (237)
Q Consensus        69 ~~~~~vLDlG~G~G~~~~~la~~~-~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  147 (237)
                      ++.++||++|||.|.++..+++++ ..+|+.+|+++.+++.|++.+...+.....-+++++.+|.....           
T Consensus        90 ~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l-----------  158 (308)
T PLN02366         90 PNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFL-----------  158 (308)
T ss_pred             CCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHH-----------
Confidence            567899999999999999998874 57899999999999999998754321111125788889875311           


Q ss_pred             cccccccCCCCCCceeEEEEeCChH-------HHHHHHHHHhHhcCCCeEEEEe---ccC-CCCHHHHHHHHhhcc-ccc
Q 026513          148 LSSHKIRGISQTEKYDVVIANILLN-------PLLQLADHIVSYAKPGAVVGIS---GIL-SEQLPHIINRYSEFL-EDI  215 (237)
Q Consensus       148 ~~~~~~~~~~~~~~fD~I~~n~~~~-------~~~~~l~~~~~~L~~gG~liis---~~~-~~~~~~~~~~~~~~~-~~~  215 (237)
                            ... ++++||+|+++..-.       ...++++.+.+.|+|||++++.   .+. .+....+...++..| ..+
T Consensus       159 ------~~~-~~~~yDvIi~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~~s~~~~~~~~~~i~~tl~~~F~~~v  231 (308)
T PLN02366        159 ------KNA-PEGTYDAIIVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQAESMWLHMDLIEDLIAICRETFKGSV  231 (308)
T ss_pred             ------hhc-cCCCCCEEEEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEECcCCcccchHHHHHHHHHHHHHCCCce
Confidence                  111 246899999975421       1246899999999999999873   222 222334555555555 222


Q ss_pred             e-----eee--cCCEEEEEEEEc
Q 026513          216 L-----VSE--MDDWTCVSGKKK  231 (237)
Q Consensus       216 ~-----~~~--~~~w~~~~~~~~  231 (237)
                      .     ++.  .+.|..+++.+.
T Consensus       232 ~~~~~~vPsy~~g~w~f~~as~~  254 (308)
T PLN02366        232 NYAWTTVPTYPSGVIGFVLCSKE  254 (308)
T ss_pred             eEEEecCCCcCCCceEEEEEECC
Confidence            2     122  367999999875

>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C

Probab=99.39  E-value=2.3e-12  Score=100.14  Aligned_cols=97  Identities=28%  Similarity=0.347  Sum_probs=74.1

Q ss_pred             ccCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccc
Q 026513           68 IKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVED  147 (237)
Q Consensus        68 ~~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  147 (237)
                      ..++.+|||+|||+|.++..++..|. +++|+|+++.+++.       ..       +.....+...             
T Consensus        20 ~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~g~D~~~~~~~~-------~~-------~~~~~~~~~~-------------   71 (161)
T PF13489_consen   20 LKPGKRVLDIGCGTGSFLRALAKRGF-EVTGVDISPQMIEK-------RN-------VVFDNFDAQD-------------   71 (161)
T ss_dssp             TTTTSEEEEESSTTSHHHHHHHHTTS-EEEEEESSHHHHHH-------TT-------SEEEEEECHT-------------
T ss_pred             cCCCCEEEEEcCCCCHHHHHHHHhCC-EEEEEECCHHHHhh-------hh-------hhhhhhhhhh-------------
Confidence            46788999999999999999988866 89999999999887       11       1111111100             


Q ss_pred             cccccccCCCCCCceeEEEEeCChHHH---HHHHHHHhHhcCCCeEEEEeccCCC
Q 026513          148 LSSHKIRGISQTEKYDVVIANILLNPL---LQLADHIVSYAKPGAVVGISGILSE  199 (237)
Q Consensus       148 ~~~~~~~~~~~~~~fD~I~~n~~~~~~---~~~l~~~~~~L~~gG~liis~~~~~  199 (237)
                             ...+.++||+|+|+.+++++   ..+++.+.++|+|||+++++.....
T Consensus        72 -------~~~~~~~fD~i~~~~~l~~~~d~~~~l~~l~~~LkpgG~l~~~~~~~~  119 (161)
T PF13489_consen   72 -------PPFPDGSFDLIICNDVLEHLPDPEEFLKELSRLLKPGGYLVISDPNRD  119 (161)
T ss_dssp             -------HHCHSSSEEEEEEESSGGGSSHHHHHHHHHHHCEEEEEEEEEEEEBTT
T ss_pred             -------hhccccchhhHhhHHHHhhcccHHHHHHHHHHhcCCCCEEEEEEcCCc
Confidence                   11236799999999998776   4679999999999999999876543

...

>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]

Probab=99.39  E-value=1e-11  Score=98.51  Aligned_cols=125  Identities=24%  Similarity=0.300  Sum_probs=95.3

Q ss_pred             CCCchhHHHHHHHHHhhcc----CCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEE
Q 026513           51 SGEHATTKLCLLLLRRLIK----GGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLH  126 (237)
Q Consensus        51 ~g~~~~~~~~~~~l~~~~~----~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~  126 (237)
                      .+.+|++..+.+.+-+.+.    .|.++||+.+|+|.+++.++.+|+.+++.+|.|..++...++|+...++..   +..
T Consensus        20 ~~~RPT~drVREalFNil~~~~i~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~l~~~~---~~~   96 (187)
T COG0742          20 PGTRPTTDRVREALFNILAPDEIEGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKALGLEG---EAR   96 (187)
T ss_pred             CCcCCCchHHHHHHHHhccccccCCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCcc---ceE
Confidence            4568888888888877554    478999999999999999999999999999999999999999999887654   477


Q ss_pred             eccCccccccccccccccccccccccccCCCCCCceeEEEEeCChH--HHHHH--HHH--HhHhcCCCeEEEEec
Q 026513          127 LVPDRTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLN--PLLQL--ADH--IVSYAKPGAVVGISG  195 (237)
Q Consensus       127 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~~--~~~~~--l~~--~~~~L~~gG~liis~  195 (237)
                      ++..|....                 +.......+||+|+.+||++  .....  +..  -..+|+|+|.+++-.
T Consensus        97 ~~~~da~~~-----------------L~~~~~~~~FDlVflDPPy~~~l~~~~~~~~~~~~~~~L~~~~~iv~E~  154 (187)
T COG0742          97 VLRNDALRA-----------------LKQLGTREPFDLVFLDPPYAKGLLDKELALLLLEENGWLKPGALIVVEH  154 (187)
T ss_pred             EEeecHHHH-----------------HHhcCCCCcccEEEeCCCCccchhhHHHHHHHHHhcCCcCCCcEEEEEe
Confidence            778876521                 11122123599999999986  22111  122  346799999999963

>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases

Probab=99.39  E-value=9.7e-12  Score=101.19  Aligned_cols=120  Identities=16%  Similarity=0.248  Sum_probs=92.0

Q ss_pred             HHHHHHHhhccCCCeEEEEcCcchHHHHHHHHh--CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccc
Q 026513           59 LCLLLLRRLIKGGELFLDYGTGSGILGIAAIKF--GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTAS  136 (237)
Q Consensus        59 ~~~~~l~~~~~~~~~vLDlG~G~G~~~~~la~~--~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~  136 (237)
                      .++..+.+. .+.++||||||++|+-++.++..  ...+|+.+|++++..+.|+++++..|+.+   +++++.+|..+..
T Consensus        35 ~lL~~l~~~-~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~---~I~~~~gda~~~l  110 (205)
T PF01596_consen   35 QLLQMLVRL-TRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDD---RIEVIEGDALEVL  110 (205)
T ss_dssp             HHHHHHHHH-HT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGG---GEEEEES-HHHHH
T ss_pred             HHHHHHHHh-cCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCC---cEEEEEeccHhhH
Confidence            334444333 34569999999999999999964  35789999999999999999999999875   5889999986311


Q ss_pred             ccccccccccccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEecc
Q 026513          137 MNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGI  196 (237)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~~  196 (237)
                           +++..         -...++||+||.+..-..+..++..+.++|+|||.+++...
T Consensus       111 -----~~l~~---------~~~~~~fD~VFiDa~K~~y~~y~~~~~~ll~~ggvii~DN~  156 (205)
T PF01596_consen  111 -----PELAN---------DGEEGQFDFVFIDADKRNYLEYFEKALPLLRPGGVIIADNV  156 (205)
T ss_dssp             -----HHHHH---------TTTTTSEEEEEEESTGGGHHHHHHHHHHHEEEEEEEEEETT
T ss_pred             -----HHHHh---------ccCCCceeEEEEcccccchhhHHHHHhhhccCCeEEEEccc
Confidence                 10100         01135899999999988888999999999999999999644

The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....

>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases

Probab=99.38  E-value=5.4e-12  Score=100.28  Aligned_cols=148  Identities=21%  Similarity=0.257  Sum_probs=87.9

Q ss_pred             eCcccccCCCCchhHHHHHHHHHhh--------ccCCCeEEEEcCcchHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHH
Q 026513           43 LNPGLAFGSGEHATTKLCLLLLRRL--------IKGGELFLDYGTGSGILGIAAIKF-GAAMSVGADIDPQAIKSAHQNA  113 (237)
Q Consensus        43 ~~~~~~f~~g~~~~~~~~~~~l~~~--------~~~~~~vLDlG~G~G~~~~~la~~-~~~~v~~vD~s~~~i~~a~~~~  113 (237)
                      .+.+..+|.-.++....+..++...        ..++.+|||+|||+|..++.++.. +..+|+.+|.++ .++..+.|+
T Consensus        10 e~~~~~~G~~vW~aa~~La~~l~~~~~~~~~~~~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni   88 (173)
T PF10294_consen   10 EDWGDGTGGKVWPAALVLARYLLSHSESEFNPELFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNI   88 (173)
T ss_dssp             -------------HHHHHHHHHHH-------GGGTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHH
T ss_pred             cccccCCcEEEechHHHHHHHHHHhcccccchhhcCCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHH
Confidence            3344456666788888877777652        346889999999999999999987 788999999999 999999999


Q ss_pred             HHcC--CCCCcceEEeccCccccccccccccccccccccccccCCCCCCceeEEEEeCCh---HHHHHHHHHHhHhcCCC
Q 026513          114 ALNN--IGPKKMKLHLVPDRTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILL---NPLLQLADHIVSYAKPG  188 (237)
Q Consensus       114 ~~~~--~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~---~~~~~~l~~~~~~L~~g  188 (237)
                      +.|+  ...   ++.+...||.+....                ......+||+|++.-.+   .....++..+..+++++
T Consensus        89 ~~N~~~~~~---~v~v~~L~Wg~~~~~----------------~~~~~~~~D~IlasDv~Y~~~~~~~L~~tl~~ll~~~  149 (173)
T PF10294_consen   89 ELNGSLLDG---RVSVRPLDWGDELDS----------------DLLEPHSFDVILASDVLYDEELFEPLVRTLKRLLKPN  149 (173)
T ss_dssp             HTT-----------EEEE--TTS-HHH----------------HHHS-SSBSEEEEES--S-GGGHHHHHHHHHHHBTT-
T ss_pred             Hhccccccc---cccCcEEEecCcccc----------------cccccccCCEEEEecccchHHHHHHHHHHHHHHhCCC
Confidence            9887  332   467777777642100                11124589999986654   34467889999999999


Q ss_pred             eEEEEeccC-CCCHHHHHHHHhh
Q 026513          189 AVVGISGIL-SEQLPHIINRYSE  210 (237)
Q Consensus       189 G~liis~~~-~~~~~~~~~~~~~  210 (237)
                      |.++++.-. .....++++.+++
T Consensus       150 ~~vl~~~~~R~~~~~~F~~~~~k  172 (173)
T PF10294_consen  150 GKVLLAYKRRRKSEQEFFDRLKK  172 (173)
T ss_dssp             TTEEEEEE-S-TGGCHHHHHH--
T ss_pred             CEEEEEeCEecHHHHHHHHHhhh
Confidence            998887543 3345566666553

They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.

>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins

Probab=99.38  E-value=2.9e-12  Score=101.75  Aligned_cols=104  Identities=17%  Similarity=0.219  Sum_probs=80.4

Q ss_pred             HHHHhhccCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccc
Q 026513           62 LLLRRLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERV  141 (237)
Q Consensus        62 ~~l~~~~~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~  141 (237)
                      +.+.+.+++|.+|||+|||.|.+...+......+..|+|+++..+..+.++    |       +.++++|+.+..     
T Consensus         5 ~~I~~~I~pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv~r----G-------v~Viq~Dld~gL-----   68 (193)
T PF07021_consen    5 QIIAEWIEPGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACVAR----G-------VSVIQGDLDEGL-----   68 (193)
T ss_pred             HHHHHHcCCCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHHHc----C-------CCEEECCHHHhH-----
Confidence            345556789999999999999999999887677899999999988776544    5       447788876421     


Q ss_pred             cccccccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEe
Q 026513          142 DGVVEDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGIS  194 (237)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis  194 (237)
                                   ...++.+||.||++-.+..+..--.-+.++|+-|...++|
T Consensus        69 -------------~~f~d~sFD~VIlsqtLQ~~~~P~~vL~EmlRVgr~~IVs  108 (193)
T PF07021_consen   69 -------------ADFPDQSFDYVILSQTLQAVRRPDEVLEEMLRVGRRAIVS  108 (193)
T ss_pred             -------------hhCCCCCccEEehHhHHHhHhHHHHHHHHHHHhcCeEEEE
Confidence                         2345889999999988877765545566667778888875

Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].

>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family

Probab=99.37  E-value=9.2e-12  Score=102.10  Aligned_cols=105  Identities=15%  Similarity=0.189  Sum_probs=75.5

Q ss_pred             cCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCC-----------CcceEEeccCccccccc
Q 026513           69 KGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGP-----------KKMKLHLVPDRTFTASM  137 (237)
Q Consensus        69 ~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~-----------~~~~v~~~~~d~~~~~~  137 (237)
                      +++.+|||+|||.|..++.+|..|.. |+|+|+|+.+++.+.+.   +++..           ...++.+.++|+++.. 
T Consensus        33 ~~~~rvLd~GCG~G~da~~LA~~G~~-V~gvD~S~~Ai~~~~~~---~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~-  107 (213)
T TIGR03840        33 PAGARVFVPLCGKSLDLAWLAEQGHR-VLGVELSEIAVEQFFAE---NGLTPTVTQQGEFTRYRAGNIEIFCGDFFALT-  107 (213)
T ss_pred             CCCCeEEEeCCCchhHHHHHHhCCCe-EEEEeCCHHHHHHHHHH---cCCCcceeccccceeeecCceEEEEccCCCCC-
Confidence            46779999999999999999998765 99999999999976432   22211           1124778888887321 


Q ss_pred             cccccccccccccccccCCCCCCceeEEEEeCCh-----HHHHHHHHHHhHhcCCCeEEEEecc
Q 026513          138 NERVDGVVEDLSSHKIRGISQTEKYDVVIANILL-----NPLLQLADHIVSYAKPGAVVGISGI  196 (237)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~-----~~~~~~l~~~~~~L~~gG~liis~~  196 (237)
                                        ....++||.|+....+     .....+++.+.++|+|||.+++.++
T Consensus       108 ------------------~~~~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~~  153 (213)
T TIGR03840       108 ------------------AADLGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLITL  153 (213)
T ss_pred             ------------------cccCCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEEE
Confidence                              1113568888764433     3345689999999999998776544

Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.

>PHA03411 putative methyltransferase; Provisional

Probab=99.37  E-value=3.7e-12  Score=107.04  Aligned_cols=113  Identities=18%  Similarity=0.240  Sum_probs=83.0

Q ss_pred             cCCCeEEEEcCcchHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccc
Q 026513           69 KGGELFLDYGTGSGILGIAAIKF-GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVED  147 (237)
Q Consensus        69 ~~~~~vLDlG~G~G~~~~~la~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  147 (237)
                      ..+.+|||+|||+|.+++.++.. +..+|+++|+++.+++.+++++.         ++.++++|+.+             
T Consensus        63 ~~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~~---------~v~~v~~D~~e-------------  120 (279)
T PHA03411         63 HCTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLLP---------EAEWITSDVFE-------------  120 (279)
T ss_pred             ccCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCc---------CCEEEECchhh-------------
Confidence            34568999999999999888764 35789999999999999988632         26677888763             


Q ss_pred             cccccccCCCCCCceeEEEEeCChHH-----------------------HHHHHHHHhHhcCCCeEEEEe--c--c--CC
Q 026513          148 LSSHKIRGISQTEKYDVVIANILLNP-----------------------LLQLADHIVSYAKPGAVVGIS--G--I--LS  198 (237)
Q Consensus       148 ~~~~~~~~~~~~~~fD~I~~n~~~~~-----------------------~~~~l~~~~~~L~~gG~liis--~--~--~~  198 (237)
                              +....+||+|++|||+.+                       +.+++.....+|+|+|.+++.  +  +  .+
T Consensus       121 --------~~~~~kFDlIIsNPPF~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~yss~~~y~~s  192 (279)
T PHA03411        121 --------FESNEKFDVVISNPPFGKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAYSGRPYYDGT  192 (279)
T ss_pred             --------hcccCCCcEEEEcCCccccCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEEEecccccccc
Confidence                    222468999999999633                       235567778899999987763  1  1  23


Q ss_pred             CCHHHHHHHHhhc
Q 026513          199 EQLPHIINRYSEF  211 (237)
Q Consensus       199 ~~~~~~~~~~~~~  211 (237)
                      -...+..+.+.+.
T Consensus       193 l~~~~y~~~l~~~  205 (279)
T PHA03411        193 MKSNKYLKWSKQT  205 (279)
T ss_pred             CCHHHHHHHHHhc
Confidence            4466777777654

>PLN03075 nicotianamine synthase; Provisional

Probab=99.37  E-value=1.1e-11  Score=105.61  Aligned_cols=102  Identities=19%  Similarity=0.224  Sum_probs=79.7

Q ss_pred             CCCeEEEEcCcchHHH-HHHH-H-hCCCeEEEEeCCHHHHHHHHHHHHH-cCCCCCcceEEeccCccccccccccccccc
Q 026513           70 GGELFLDYGTGSGILG-IAAI-K-FGAAMSVGADIDPQAIKSAHQNAAL-NNIGPKKMKLHLVPDRTFTASMNERVDGVV  145 (237)
Q Consensus        70 ~~~~vLDlG~G~G~~~-~~la-~-~~~~~v~~vD~s~~~i~~a~~~~~~-~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  145 (237)
                      ++++|+|+|||.|.++ +.++ . .+..+++++|+|+.+++.|++.+.. .++.+   ++.|..+|..+           
T Consensus       123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~---rV~F~~~Da~~-----------  188 (296)
T PLN03075        123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSK---RMFFHTADVMD-----------  188 (296)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccC---CcEEEECchhh-----------
Confidence            6789999999987554 4444 2 3667899999999999999999964 67765   58899999763           


Q ss_pred             cccccccccCCCCCCceeEEEEeCChH-----HHHHHHHHHhHhcCCCeEEEEec
Q 026513          146 EDLSSHKIRGISQTEKYDVVIANILLN-----PLLQLADHIVSYAKPGAVVGISG  195 (237)
Q Consensus       146 ~~~~~~~~~~~~~~~~fD~I~~n~~~~-----~~~~~l~~~~~~L~~gG~liis~  195 (237)
                               .....++||+|+++ .++     ...++++.+.+.|+|||.+++..
T Consensus       189 ---------~~~~l~~FDlVF~~-ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~  233 (296)
T PLN03075        189 ---------VTESLKEYDVVFLA-ALVGMDKEEKVKVIEHLGKHMAPGALLMLRS  233 (296)
T ss_pred             ---------cccccCCcCEEEEe-cccccccccHHHHHHHHHHhcCCCcEEEEec
Confidence                     11124689999999 543     33578999999999999999963

>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.37  E-value=1.5e-11  Score=106.50  Aligned_cols=100  Identities=17%  Similarity=0.278  Sum_probs=79.1

Q ss_pred             ccCCCeEEEEcCcchHHHHHHHHhC--CCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccc
Q 026513           68 IKGGELFLDYGTGSGILGIAAIKFG--AAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVV  145 (237)
Q Consensus        68 ~~~~~~vLDlG~G~G~~~~~la~~~--~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  145 (237)
                      ++++.+|||+|||+|.++..+++..  ..+|+++|+++.+++.|++++...++.+    +.++++|..+           
T Consensus        78 i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~n----V~~i~gD~~~-----------  142 (322)
T PRK13943         78 LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIEN----VIFVCGDGYY-----------  142 (322)
T ss_pred             CCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCc----EEEEeCChhh-----------
Confidence            4678899999999999999998753  2469999999999999999999888764    7788888653           


Q ss_pred             cccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEe
Q 026513          146 EDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGIS  194 (237)
Q Consensus       146 ~~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis  194 (237)
                               ......+||+|+++......   ...+.+.|+|||.+++.
T Consensus       143 ---------~~~~~~~fD~Ii~~~g~~~i---p~~~~~~LkpgG~Lvv~  179 (322)
T PRK13943        143 ---------GVPEFAPYDVIFVTVGVDEV---PETWFTQLKEGGRVIVP  179 (322)
T ss_pred             ---------cccccCCccEEEECCchHHh---HHHHHHhcCCCCEEEEE
Confidence                     11123579999998755433   34567889999998884

>COG4122 Predicted O-methyltransferase [General function prediction only]

Probab=99.36  E-value=1.8e-11  Score=99.85  Aligned_cols=121  Identities=17%  Similarity=0.240  Sum_probs=95.6

Q ss_pred             hhHHHHHHHHHhhccCCCeEEEEcCcchHHHHHHHHh-C-CCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEecc-Cc
Q 026513           55 ATTKLCLLLLRRLIKGGELFLDYGTGSGILGIAAIKF-G-AAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVP-DR  131 (237)
Q Consensus        55 ~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~la~~-~-~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~-~d  131 (237)
                      +.+..++..+.+. .+.++|||+|++.|+-++.++.. + ..+++.+|++++.++.|++|+++.|+.+   ++..+. +|
T Consensus        45 ~e~g~~L~~L~~~-~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~---~i~~~~~gd  120 (219)
T COG4122          45 PETGALLRLLARL-SGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDD---RIELLLGGD  120 (219)
T ss_pred             hhHHHHHHHHHHh-cCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcc---eEEEEecCc
Confidence            3444444554443 46789999999999999998863 4 6789999999999999999999999987   466666 57


Q ss_pred             cccccccccccccccccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEeccC
Q 026513          132 TFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGIL  197 (237)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~~~  197 (237)
                      ..+.                 +.. ...++||+||.+.--..+.+++..+.++|+|||.+++..++
T Consensus       121 al~~-----------------l~~-~~~~~fDliFIDadK~~yp~~le~~~~lLr~GGliv~DNvl  168 (219)
T COG4122         121 ALDV-----------------LSR-LLDGSFDLVFIDADKADYPEYLERALPLLRPGGLIVADNVL  168 (219)
T ss_pred             HHHH-----------------HHh-ccCCCccEEEEeCChhhCHHHHHHHHHHhCCCcEEEEeecc
Confidence            6531                 111 22589999999998888899999999999999999996543

>PRK08317 hypothetical protein; Provisional

Probab=99.35  E-value=2.4e-11  Score=100.41  Aligned_cols=103  Identities=20%  Similarity=0.202  Sum_probs=80.3

Q ss_pred             ccCCCeEEEEcCcchHHHHHHHHh--CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccc
Q 026513           68 IKGGELFLDYGTGSGILGIAAIKF--GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVV  145 (237)
Q Consensus        68 ~~~~~~vLDlG~G~G~~~~~la~~--~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  145 (237)
                      +.++.+|||+|||+|.++..++..  +..+++|+|+++.+++.++++.... ..    .+.+..+|....          
T Consensus        17 ~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~-~~----~~~~~~~d~~~~----------   81 (241)
T PRK08317         17 VQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGL-GP----NVEFVRGDADGL----------   81 (241)
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCC-CC----ceEEEecccccC----------
Confidence            467889999999999999988865  3578999999999999999873322 12    367777776521          


Q ss_pred             cccccccccCCCCCCceeEEEEeCChHHH---HHHHHHHhHhcCCCeEEEEec
Q 026513          146 EDLSSHKIRGISQTEKYDVVIANILLNPL---LQLADHIVSYAKPGAVVGISG  195 (237)
Q Consensus       146 ~~~~~~~~~~~~~~~~fD~I~~n~~~~~~---~~~l~~~~~~L~~gG~liis~  195 (237)
                                ....++||+|+++..+++.   ..+++.+.++|+|||.+++..
T Consensus        82 ----------~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~  124 (241)
T PRK08317         82 ----------PFPDGSFDAVRSDRVLQHLEDPARALAEIARVLRPGGRVVVLD  124 (241)
T ss_pred             ----------CCCCCCceEEEEechhhccCCHHHHHHHHHHHhcCCcEEEEEe
Confidence                      1225689999998877554   467999999999999999864

>TIGR00438 rrmJ cell division protein FtsJ

Probab=99.35  E-value=5.9e-12  Score=101.26  Aligned_cols=118  Identities=20%  Similarity=0.309  Sum_probs=82.9

Q ss_pred             ccCCCeEEEEcCcchHHHHHHHHh--CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccc
Q 026513           68 IKGGELFLDYGTGSGILGIAAIKF--GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVV  145 (237)
Q Consensus        68 ~~~~~~vLDlG~G~G~~~~~la~~--~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  145 (237)
                      +++|.+|||+|||+|.++..++..  +..+|+++|+++.+           ...    .+.++++|..+....+      
T Consensus        30 i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~-----------~~~----~i~~~~~d~~~~~~~~------   88 (188)
T TIGR00438        30 IKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK-----------PIE----NVDFIRGDFTDEEVLN------   88 (188)
T ss_pred             cCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc-----------cCC----CceEEEeeCCChhHHH------
Confidence            578899999999999999988764  45679999999954           112    2566677765311000      


Q ss_pred             cccccccccCCCCCCceeEEEEeCC--------hHH------HHHHHHHHhHhcCCCeEEEEeccCCCCHHHHHHHHhhc
Q 026513          146 EDLSSHKIRGISQTEKYDVVIANIL--------LNP------LLQLADHIVSYAKPGAVVGISGILSEQLPHIINRYSEF  211 (237)
Q Consensus       146 ~~~~~~~~~~~~~~~~fD~I~~n~~--------~~~------~~~~l~~~~~~L~~gG~liis~~~~~~~~~~~~~~~~~  211 (237)
                            .+....+..+||+|+++++        .++      ...++..+.+.|+|||++++..+..+...++...+...
T Consensus        89 ------~l~~~~~~~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~~~~~~~~~l~~l~~~  162 (188)
T TIGR00438        89 ------KIRERVGDDKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVFQGEEIDEYLNELRKL  162 (188)
T ss_pred             ------HHHHHhCCCCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEccCccHHHHHHHHHhh
Confidence                  0001123468999999753        111      25678999999999999999888888888888877655


Q ss_pred             c
Q 026513          212 L  212 (237)
Q Consensus       212 ~  212 (237)
                      |
T Consensus       163 ~  163 (188)
T TIGR00438       163 F  163 (188)
T ss_pred             h
Confidence            4

>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase

Probab=99.35  E-value=1.5e-11  Score=101.12  Aligned_cols=99  Identities=22%  Similarity=0.375  Sum_probs=77.3

Q ss_pred             cCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccccc
Q 026513           69 KGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDL  148 (237)
Q Consensus        69 ~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~  148 (237)
                      .++.+|||+|||+|.++..++..+ .+++|+|+|+.+++.|++++...+...   ++.+..+|+.+              
T Consensus        54 ~~~~~vLDiGcG~G~~~~~la~~~-~~v~gvD~s~~~i~~a~~~~~~~~~~~---~i~~~~~d~~~--------------  115 (219)
T TIGR02021        54 LKGKRVLDAGCGTGLLSIELAKRG-AIVKAVDISEQMVQMARNRAQGRDVAG---NVEFEVNDLLS--------------  115 (219)
T ss_pred             CCCCEEEEEeCCCCHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHhcCCCC---ceEEEECChhh--------------
Confidence            457899999999999999998774 579999999999999999988776532   37788888652              


Q ss_pred             ccccccCCCCCCceeEEEEeCChHH-----HHHHHHHHhHhcCCCeEEEEe
Q 026513          149 SSHKIRGISQTEKYDVVIANILLNP-----LLQLADHIVSYAKPGAVVGIS  194 (237)
Q Consensus       149 ~~~~~~~~~~~~~fD~I~~n~~~~~-----~~~~l~~~~~~L~~gG~liis  194 (237)
                             .  ..+||+|++...+.+     ...++.++.+++++++++.++
T Consensus       116 -------~--~~~fD~ii~~~~l~~~~~~~~~~~l~~i~~~~~~~~~i~~~  157 (219)
T TIGR02021       116 -------L--CGEFDIVVCMDVLIHYPASDMAKALGHLASLTKERVIFTFA  157 (219)
T ss_pred             -------C--CCCcCEEEEhhHHHhCCHHHHHHHHHHHHHHhCCCEEEEEC
Confidence                   1  268999998665533     345678888888877766654

This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.

>PRK05785 hypothetical protein; Provisional

Probab=99.34  E-value=1.5e-11  Score=101.76  Aligned_cols=97  Identities=14%  Similarity=0.092  Sum_probs=72.1

Q ss_pred             HHHHHHhhccCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccc
Q 026513           60 CLLLLRRLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNE  139 (237)
Q Consensus        60 ~~~~l~~~~~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~  139 (237)
                      +...+.....++.+|||+|||+|.++..+++....+|+|+|+|+.|++.|++..            .++++|..+     
T Consensus        41 ~~~~l~~~~~~~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml~~a~~~~------------~~~~~d~~~-----  103 (226)
T PRK05785         41 LVKTILKYCGRPKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENMLKMNLVAD------------DKVVGSFEA-----  103 (226)
T ss_pred             HHHHHHHhcCCCCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHHHHHHhcc------------ceEEechhh-----
Confidence            334443333457899999999999999988763468999999999999988641            123555542     


Q ss_pred             cccccccccccccccCCCCCCceeEEEEeCChHHH---HHHHHHHhHhcCCC
Q 026513          140 RVDGVVEDLSSHKIRGISQTEKYDVVIANILLNPL---LQLADHIVSYAKPG  188 (237)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~~~~---~~~l~~~~~~L~~g  188 (237)
                                     ...++++||+|+++..+++.   .+.++++.+.|+|.
T Consensus       104 ---------------lp~~d~sfD~v~~~~~l~~~~d~~~~l~e~~RvLkp~  140 (226)
T PRK05785        104 ---------------LPFRDKSFDVVMSSFALHASDNIEKVIAEFTRVSRKQ  140 (226)
T ss_pred             ---------------CCCCCCCEEEEEecChhhccCCHHHHHHHHHHHhcCc
Confidence                           12346899999999887654   46799999999994

>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional

Probab=99.34  E-value=1.9e-11  Score=104.00  Aligned_cols=117  Identities=20%  Similarity=0.158  Sum_probs=80.8

Q ss_pred             HHHHHHHHhhc-cCCCeEEEEcCcchHHHHHHHHh-C---CCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcc
Q 026513           58 KLCLLLLRRLI-KGGELFLDYGTGSGILGIAAIKF-G---AAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRT  132 (237)
Q Consensus        58 ~~~~~~l~~~~-~~~~~vLDlG~G~G~~~~~la~~-~---~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~  132 (237)
                      ..+...+...+ .++.+|||+|||+|.++..++.. +   ..+++|+|+|+.+++.|+++.     .+    +.+..+|.
T Consensus        72 ~~i~~~l~~~l~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~-----~~----~~~~~~d~  142 (272)
T PRK11088         72 DAVANLLAERLDEKATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY-----PQ----VTFCVASS  142 (272)
T ss_pred             HHHHHHHHHhcCCCCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC-----CC----CeEEEeec
Confidence            33334444332 34578999999999999988754 2   236999999999999987652     22    55667776


Q ss_pred             ccccccccccccccccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEeccCCCCHHHHHHH
Q 026513          133 FTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILSEQLPHIINR  207 (237)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~~~~~~~~~~~~~  207 (237)
                      .+                    ...++++||+|++...    ...++++.+.|+|||++++.........++...
T Consensus       143 ~~--------------------lp~~~~sfD~I~~~~~----~~~~~e~~rvLkpgG~li~~~p~~~~l~el~~~  193 (272)
T PRK11088        143 HR--------------------LPFADQSLDAIIRIYA----PCKAEELARVVKPGGIVITVTPGPRHLFELKGL  193 (272)
T ss_pred             cc--------------------CCCcCCceeEEEEecC----CCCHHHHHhhccCCCEEEEEeCCCcchHHHHHH
Confidence            52                    1223678999998654    234578899999999999976555444455444

>smart00650 rADc Ribosomal RNA adenine dimethylases

Probab=99.34  E-value=1.1e-11  Score=98.13  Aligned_cols=100  Identities=19%  Similarity=0.231  Sum_probs=78.0

Q ss_pred             ccCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccc
Q 026513           68 IKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVED  147 (237)
Q Consensus        68 ~~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  147 (237)
                      ..++.+|||+|||+|.++..++.. ..+++++|+++.+++.+++++..  ..    +++++.+|+.+..           
T Consensus        11 ~~~~~~vLEiG~G~G~lt~~l~~~-~~~v~~vE~~~~~~~~~~~~~~~--~~----~v~ii~~D~~~~~-----------   72 (169)
T smart00650       11 LRPGDTVLEIGPGKGALTEELLER-AARVTAIEIDPRLAPRLREKFAA--AD----NLTVIHGDALKFD-----------   72 (169)
T ss_pred             CCCcCEEEEECCCccHHHHHHHhc-CCeEEEEECCHHHHHHHHHHhcc--CC----CEEEEECchhcCC-----------
Confidence            356789999999999999999987 57899999999999999988753  22    3788899986321           


Q ss_pred             cccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHh--cCCCeEEEEe
Q 026513          148 LSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSY--AKPGAVVGIS  194 (237)
Q Consensus       148 ~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~--L~~gG~liis  194 (237)
                               .++.+||.|++|+|++....++..+...  +.++|.+++.
T Consensus        73 ---------~~~~~~d~vi~n~Py~~~~~~i~~~l~~~~~~~~~~l~~q  112 (169)
T smart00650       73 ---------LPKLQPYKVVGNLPYNISTPILFKLLEEPPAFRDAVLMVQ  112 (169)
T ss_pred             ---------ccccCCCEEEECCCcccHHHHHHHHHhcCCCcceEEEEEE
Confidence                     1234699999999998766776666653  3478888874

>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional

Probab=99.33  E-value=1.7e-11  Score=108.71  Aligned_cols=99  Identities=23%  Similarity=0.295  Sum_probs=81.0

Q ss_pred             CCeEEEEcCcchHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccccc
Q 026513           71 GELFLDYGTGSGILGIAAIKF-GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDLS  149 (237)
Q Consensus        71 ~~~vLDlG~G~G~~~~~la~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~  149 (237)
                      +.+|||++||+|.+++.++.. +..+|+++|+++.+++.+++|++.|++.+    +.+.++|+...              
T Consensus        58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~~----~~v~~~Da~~~--------------  119 (382)
T PRK04338         58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLEN----EKVFNKDANAL--------------  119 (382)
T ss_pred             CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCc----eEEEhhhHHHH--------------
Confidence            468999999999999998864 66689999999999999999999999875    66788887521              


Q ss_pred             cccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEe
Q 026513          150 SHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGIS  194 (237)
Q Consensus       150 ~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis  194 (237)
                         +..   ..+||+|++||+ .....+++.+...+++||.++++
T Consensus       120 ---l~~---~~~fD~V~lDP~-Gs~~~~l~~al~~~~~~gilyvS  157 (382)
T PRK04338        120 ---LHE---ERKFDVVDIDPF-GSPAPFLDSAIRSVKRGGLLCVT  157 (382)
T ss_pred             ---Hhh---cCCCCEEEECCC-CCcHHHHHHHHHHhcCCCEEEEE
Confidence               101   357999999997 33356778877888999999997

>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU

Probab=99.32  E-value=2.3e-11  Score=105.14  Aligned_cols=103  Identities=18%  Similarity=0.253  Sum_probs=83.3

Q ss_pred             ccCCCeEEEEcCcchHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccc
Q 026513           68 IKGGELFLDYGTGSGILGIAAIKF-GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVE  146 (237)
Q Consensus        68 ~~~~~~vLDlG~G~G~~~~~la~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  146 (237)
                      +.++.+|||+|||+|.+++.+++. +..+++++|. +.+++.+++++...++.+   +++++.+|.++.           
T Consensus       147 ~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~gl~~---rv~~~~~d~~~~-----------  211 (306)
T TIGR02716       147 LDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVAD---RMRGIAVDIYKE-----------  211 (306)
T ss_pred             CCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCCccc---eEEEEecCccCC-----------
Confidence            356789999999999999998865 6678999997 789999999999888876   588999998631           


Q ss_pred             ccccccccCCCCCCceeEEEEeCChHHH-----HHHHHHHhHhcCCCeEEEEecc
Q 026513          147 DLSSHKIRGISQTEKYDVVIANILLNPL-----LQLADHIVSYAKPGAVVGISGI  196 (237)
Q Consensus       147 ~~~~~~~~~~~~~~~fD~I~~n~~~~~~-----~~~l~~~~~~L~~gG~liis~~  196 (237)
                              .   -+.+|+|++...++..     ..+++++.+.|+|||++++.++
T Consensus       212 --------~---~~~~D~v~~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~  255 (306)
T TIGR02716       212 --------S---YPEADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDM  255 (306)
T ss_pred             --------C---CCCCCEEEeEhhhhcCChHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence                    1   1247998876655432     4689999999999999999865

Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.

>TIGR03438 probable methyltransferase

Probab=99.32  E-value=4.3e-11  Score=103.19  Aligned_cols=121  Identities=14%  Similarity=0.090  Sum_probs=82.9

Q ss_pred             ccCCCeEEEEcCcchHHHHHHHHhC--CCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccc-cccccccc
Q 026513           68 IKGGELFLDYGTGSGILGIAAIKFG--AAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTAS-MNERVDGV  144 (237)
Q Consensus        68 ~~~~~~vLDlG~G~G~~~~~la~~~--~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~-~~~~~~~~  144 (237)
                      ++++.+|||+|||+|..+..+++..  ..+|+++|+|+.|++.|++++....   ..+++.++++|+.+.. .+      
T Consensus        61 ~~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~---p~~~v~~i~gD~~~~~~~~------  131 (301)
T TIGR03438        61 TGAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADY---PQLEVHGICADFTQPLALP------  131 (301)
T ss_pred             hCCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhC---CCceEEEEEEcccchhhhh------
Confidence            5577899999999999999988663  4679999999999999999876543   1234777889886421 00      


Q ss_pred             ccccccccccCCCCCCceeEEEEeCCh-----HHHHHHHHHHhHhcCCCeEEEEeccCCCCHHHHHHH
Q 026513          145 VEDLSSHKIRGISQTEKYDVVIANILL-----NPLLQLADHIVSYAKPGAVVGISGILSEQLPHIINR  207 (237)
Q Consensus       145 ~~~~~~~~~~~~~~~~~fD~I~~n~~~-----~~~~~~l~~~~~~L~~gG~liis~~~~~~~~~~~~~  207 (237)
                                .........+++++..+     .....+++++.+.|+|||.++++-....+...+...
T Consensus       132 ----------~~~~~~~~~~~~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~lig~d~~~~~~~~~~a  189 (301)
T TIGR03438       132 ----------PEPAAGRRLGFFPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLIGVDLVKDPAVLEAA  189 (301)
T ss_pred             ----------cccccCCeEEEEecccccCCCHHHHHHHHHHHHHhcCCCCEEEEeccCCCCHHHHHHh
Confidence                      00001123344443332     334578999999999999999975555555544444

This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases

>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]

Probab=99.31  E-value=1e-11  Score=110.80  Aligned_cols=152  Identities=19%  Similarity=0.269  Sum_probs=114.2

Q ss_pred             CceeEEeCcccccCCCCchhHHHHHHHHHh-hccCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHH
Q 026513           37 QATNIILNPGLAFGSGEHATTKLCLLLLRR-LIKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAAL  115 (237)
Q Consensus        37 ~~~~~~~~~~~~f~~g~~~~~~~~~~~l~~-~~~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~  115 (237)
                      ....|.++|+.+|+++.+..+.+..-+=+. .+++++.++|+.||||.+++.+++. ..+|+|+++++++++.|+.|+..
T Consensus       349 ~~ltF~iSp~AFFQ~Nt~~aevLys~i~e~~~l~~~k~llDv~CGTG~iglala~~-~~~ViGvEi~~~aV~dA~~nA~~  427 (534)
T KOG2187|consen  349 LGLTFRISPGAFFQTNTSAAEVLYSTIGEWAGLPADKTLLDVCCGTGTIGLALARG-VKRVIGVEISPDAVEDAEKNAQI  427 (534)
T ss_pred             CCeEEEECCchhhccCcHHHHHHHHHHHHHhCCCCCcEEEEEeecCCceehhhhcc-ccceeeeecChhhcchhhhcchh
Confidence            356899999999999887666544333222 2567889999999999999999876 78899999999999999999999


Q ss_pred             cCCCCCcceEEeccCccccccccccccccccccccccccCCCC--CCcee-EEEEeCChHHHHH-HHHHHhHhcCCCeEE
Q 026513          116 NNIGPKKMKLHLVPDRTFTASMNERVDGVVEDLSSHKIRGISQ--TEKYD-VVIANILLNPLLQ-LADHIVSYAKPGAVV  191 (237)
Q Consensus       116 ~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~fD-~I~~n~~~~~~~~-~l~~~~~~L~~gG~l  191 (237)
                      |+++|    ..|+++-..+                 .+..+..  -.+-+ +++++|++..+.. +++.+...-++--.+
T Consensus       428 NgisN----a~Fi~gqaE~-----------------~~~sl~~~~~~~~~~v~iiDPpR~Glh~~~ik~l~~~~~~~rlv  486 (534)
T KOG2187|consen  428 NGISN----ATFIVGQAED-----------------LFPSLLTPCCDSETLVAIIDPPRKGLHMKVIKALRAYKNPRRLV  486 (534)
T ss_pred             cCccc----eeeeecchhh-----------------ccchhcccCCCCCceEEEECCCcccccHHHHHHHHhccCccceE
Confidence            99998    8888883321                 1111111  12345 7788999877764 455566665699999


Q ss_pred             EEeccCCCCHHHHHHHHhh
Q 026513          192 GISGILSEQLPHIINRYSE  210 (237)
Q Consensus       192 iis~~~~~~~~~~~~~~~~  210 (237)
                      |+||......+.+...+.+
T Consensus       487 yvSCn~~t~ar~v~~lc~~  505 (534)
T KOG2187|consen  487 YVSCNPHTAARNVIDLCSS  505 (534)
T ss_pred             EEEcCHHHhhhhHHHhhcC
Confidence            9999877667777777664

>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

Probab=99.30  E-value=3.1e-11  Score=85.52  Aligned_cols=99  Identities=26%  Similarity=0.371  Sum_probs=77.5

Q ss_pred             eEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccccccccc
Q 026513           73 LFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDLSSHK  152 (237)
Q Consensus        73 ~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~  152 (237)
                      +++|+|||+|.++..++..+..+++++|+++.+++.+++........    .+.++..|..+..                
T Consensus         1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~----------------   60 (107)
T cd02440           1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALLAD----NVEVLKGDAEELP----------------   60 (107)
T ss_pred             CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhccccc----ceEEEEcChhhhc----------------
Confidence            48999999999999888766788999999999999998644433333    3777788876321                


Q ss_pred             ccCCCCCCceeEEEEeCChHH----HHHHHHHHhHhcCCCeEEEEe
Q 026513          153 IRGISQTEKYDVVIANILLNP----LLQLADHIVSYAKPGAVVGIS  194 (237)
Q Consensus       153 ~~~~~~~~~fD~I~~n~~~~~----~~~~l~~~~~~L~~gG~liis  194 (237)
                        . ...++||+|+++.+++.    ...++..+.+.++|||.++++
T Consensus        61 --~-~~~~~~d~i~~~~~~~~~~~~~~~~l~~~~~~l~~~g~~~~~  103 (107)
T cd02440          61 --P-EADESFDVIISDPPLHHLVEDLARFLEEARRLLKPGGVLVLT  103 (107)
T ss_pred             --c-ccCCceEEEEEccceeehhhHHHHHHHHHHHHcCCCCEEEEE
Confidence              0 12468999999998754    356789999999999999986

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).

>PRK01581 speE spermidine synthase; Validated

Probab=99.30  E-value=1.4e-10  Score=101.14  Aligned_cols=173  Identities=15%  Similarity=0.110  Sum_probs=104.2

Q ss_pred             eEEeCcccccCCCC-chhHHHHHHHHHhhccCCCeEEEEcCcchHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHH----
Q 026513           40 NIILNPGLAFGSGE-HATTKLCLLLLRRLIKGGELFLDYGTGSGILGIAAIKF-GAAMSVGADIDPQAIKSAHQNA----  113 (237)
Q Consensus        40 ~~~~~~~~~f~~g~-~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~la~~-~~~~v~~vD~s~~~i~~a~~~~----  113 (237)
                      .+.++...-+.... +.....+...........++||++|||+|..+..+.+. +..+|+++|+++.+++.|++..    
T Consensus       119 ~L~LDG~~Q~se~DE~iYHE~Lvhp~m~~h~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~  198 (374)
T PRK01581        119 RLYLDKQLQFSSVDEQIYHEALVHPIMSKVIDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVS  198 (374)
T ss_pred             EEEECCeeccccccHHHHHHHHHHHHHHhCCCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccch
Confidence            45555553333222 22333333333333355679999999999988888876 4678999999999999999631    


Q ss_pred             -HHcCCCCCcceEEeccCccccccccccccccccccccccccCCCCCCceeEEEEeCChH-------H-HHHHHHHHhHh
Q 026513          114 -ALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLN-------P-LLQLADHIVSY  184 (237)
Q Consensus       114 -~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~~-------~-~~~~l~~~~~~  184 (237)
                       ......+.  +++++.+|..+..                 .  ...++||+|+++.+-.       . ..++++.+.+.
T Consensus       199 ~~~~~~~Dp--RV~vvi~Da~~fL-----------------~--~~~~~YDVIIvDl~DP~~~~~~~LyT~EFy~~~~~~  257 (374)
T PRK01581        199 LNKSAFFDN--RVNVHVCDAKEFL-----------------S--SPSSLYDVIIIDFPDPATELLSTLYTSELFARIATF  257 (374)
T ss_pred             hccccCCCC--ceEEEECcHHHHH-----------------H--hcCCCccEEEEcCCCccccchhhhhHHHHHHHHHHh
Confidence             11122222  5778888876321                 0  1246899999986421       1 24689999999


Q ss_pred             cCCCeEEEEeccCCCCHHH----HHHHHhhccccc------eeeecCCEEEEEEEEccc
Q 026513          185 AKPGAVVGISGILSEQLPH----IINRYSEFLEDI------LVSEMDDWTCVSGKKKRV  233 (237)
Q Consensus       185 L~~gG~liis~~~~~~~~~----~~~~~~~~~~~~------~~~~~~~w~~~~~~~~~~  233 (237)
                      |+|||++++..-.......    +...++..|-.+      .....+.|...++++...
T Consensus       258 LkPgGV~V~Qs~sp~~~~~~~~~i~~tL~~af~~v~~y~t~vPsyg~~WgF~~as~~~~  316 (374)
T PRK01581        258 LTEDGAFVCQSNSPADAPLVYWSIGNTIEHAGLTVKSYHTIVPSFGTDWGFHIAANSAY  316 (374)
T ss_pred             cCCCcEEEEecCChhhhHHHHHHHHHHHHHhCCceEEEEEecCCCCCceEEEEEeCCcc
Confidence            9999999885321111122    223333222111      112344599999987543

>smart00138 MeTrc Methyltransferase, chemotaxis proteins

Probab=99.30  E-value=1.3e-11  Score=104.51  Aligned_cols=105  Identities=15%  Similarity=0.232  Sum_probs=73.0

Q ss_pred             CCCeEEEEcCcchH----HHHHHHHh-C-----CCeEEEEeCCHHHHHHHHHHHH----HcCCCCC--------------
Q 026513           70 GGELFLDYGTGSGI----LGIAAIKF-G-----AAMSVGADIDPQAIKSAHQNAA----LNNIGPK--------------  121 (237)
Q Consensus        70 ~~~~vLDlG~G~G~----~~~~la~~-~-----~~~v~~vD~s~~~i~~a~~~~~----~~~~~~~--------------  121 (237)
                      ++.+|+|+|||+|.    +++.++.. +     ..+|+|+|+|+.+++.|++.+.    ..++...              
T Consensus        99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~  178 (264)
T smart00138       99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYR  178 (264)
T ss_pred             CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEE
Confidence            45799999999995    45555543 2     3579999999999999998642    1111100              


Q ss_pred             -----cceEEeccCccccccccccccccccccccccccCCCCCCceeEEEEeCChHHH-----HHHHHHHhHhcCCCeEE
Q 026513          122 -----KMKLHLVPDRTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLNPL-----LQLADHIVSYAKPGAVV  191 (237)
Q Consensus       122 -----~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~~~~-----~~~l~~~~~~L~~gG~l  191 (237)
                           .-.+.|.+.|+.+                    ...+.++||+|+|..+++++     .++++++.+.|+|||+|
T Consensus       179 v~~~ir~~V~F~~~dl~~--------------------~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L  238 (264)
T smart00138      179 VKPELKERVRFAKHNLLA--------------------ESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYL  238 (264)
T ss_pred             EChHHhCcCEEeeccCCC--------------------CCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEE
Confidence                 0024555666542                    22236789999997766543     36899999999999999


Q ss_pred             EEe
Q 026513          192 GIS  194 (237)
Q Consensus       192 iis  194 (237)
                      +++
T Consensus       239 ~lg  241 (264)
T smart00138      239 FLG  241 (264)
T ss_pred             EEE
Confidence            996

Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.

>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase

Probab=99.29  E-value=9.6e-11  Score=93.58  Aligned_cols=104  Identities=22%  Similarity=0.285  Sum_probs=74.2

Q ss_pred             ccCCCeEEEEcCcchHHHHHHHHh-CCC---------eEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccc
Q 026513           68 IKGGELFLDYGTGSGILGIAAIKF-GAA---------MSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASM  137 (237)
Q Consensus        68 ~~~~~~vLDlG~G~G~~~~~la~~-~~~---------~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~  137 (237)
                      .+++..+||..||+|++.+.++.. ...         +++|.|+++.+++.|++|+...++..   .+.+.+.|+.+.. 
T Consensus        26 ~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~---~i~~~~~D~~~l~-  101 (179)
T PF01170_consen   26 WRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVED---YIDFIQWDARELP-  101 (179)
T ss_dssp             --TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CG---GEEEEE--GGGGG-
T ss_pred             CCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCC---ceEEEecchhhcc-
Confidence            467889999999999999988754 222         38899999999999999999988865   4778888887321 


Q ss_pred             cccccccccccccccccCCCCCCceeEEEEeCCh-----------HHHHHHHHHHhHhcCCCeEEEEe
Q 026513          138 NERVDGVVEDLSSHKIRGISQTEKYDVVIANILL-----------NPLLQLADHIVSYAKPGAVVGIS  194 (237)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~-----------~~~~~~l~~~~~~L~~gG~liis  194 (237)
                                         ...+++|+|++|||+           ..+..+++.+.+.+++..+++++
T Consensus       102 -------------------~~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~~~v~l~~  150 (179)
T PF01170_consen  102 -------------------LPDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKPRAVFLTT  150 (179)
T ss_dssp             -------------------GTTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTTCEEEEEE
T ss_pred             -------------------cccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCCCEEEEEE
Confidence                               235799999999995           33457789999999995555554

It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.

>PRK13255 thiopurine S-methyltransferase; Reviewed

Probab=99.29  E-value=4.8e-11  Score=98.21  Aligned_cols=119  Identities=12%  Similarity=0.107  Sum_probs=81.5

Q ss_pred             cCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCC-----------CcceEEeccCccccccc
Q 026513           69 KGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGP-----------KKMKLHLVPDRTFTASM  137 (237)
Q Consensus        69 ~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~-----------~~~~v~~~~~d~~~~~~  137 (237)
                      .++.+|||+|||.|..++.++..|.. |+|+|+|+.+++.+..   .+++..           ...++.+.++|+++.. 
T Consensus        36 ~~~~rvL~~gCG~G~da~~LA~~G~~-V~avD~s~~Ai~~~~~---~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~-  110 (218)
T PRK13255         36 PAGSRVLVPLCGKSLDMLWLAEQGHE-VLGVELSELAVEQFFA---ENGLTPQTRQSGEFEHYQAGEITIYCGDFFALT-  110 (218)
T ss_pred             CCCCeEEEeCCCChHhHHHHHhCCCe-EEEEccCHHHHHHHHH---HcCCCccccccccccccccCceEEEECcccCCC-
Confidence            45779999999999999999998665 9999999999998642   223221           1124777888887321 


Q ss_pred             cccccccccccccccccCCCCCCceeEEEEeC-----ChHHHHHHHHHHhHhcCCCeEEEEecc-C----------CCCH
Q 026513          138 NERVDGVVEDLSSHKIRGISQTEKYDVVIANI-----LLNPLLQLADHIVSYAKPGAVVGISGI-L----------SEQL  201 (237)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~-----~~~~~~~~l~~~~~~L~~gG~liis~~-~----------~~~~  201 (237)
                                        ....+.||+|+.-.     +.....++++.+.++|+|||.+++.++ .          .-+.
T Consensus       111 ------------------~~~~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l~~~~~~~~~~~gPp~~~~~  172 (218)
T PRK13255        111 ------------------AADLADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLLVTLDYPQEELAGPPFSVSD  172 (218)
T ss_pred             ------------------cccCCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEEEEEEeCCccCCCCCCCCCH
Confidence                              11125799998433     334446789999999999997554211 1          1235


Q ss_pred             HHHHHHHhh
Q 026513          202 PHIINRYSE  210 (237)
Q Consensus       202 ~~~~~~~~~  210 (237)
                      .++...+..
T Consensus       173 ~el~~~~~~  181 (218)
T PRK13255        173 EEVEALYAG  181 (218)
T ss_pred             HHHHHHhcC
Confidence            667666665

>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases

Probab=99.29  E-value=5.4e-11  Score=97.47  Aligned_cols=103  Identities=17%  Similarity=0.218  Sum_probs=79.8

Q ss_pred             cCCCeEEEEcCcchHHHHHHHHhCC--CeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccc
Q 026513           69 KGGELFLDYGTGSGILGIAAIKFGA--AMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVE  146 (237)
Q Consensus        69 ~~~~~vLDlG~G~G~~~~~la~~~~--~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  146 (237)
                      .++.+|||+|||+|.++..+++...  .+++++|+++.+++.++++..  ...    ++.++.+|..+.           
T Consensus        38 ~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~--~~~----~i~~~~~d~~~~-----------  100 (223)
T TIGR01934        38 FKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE--LPL----NIEFIQADAEAL-----------  100 (223)
T ss_pred             CCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc--cCC----CceEEecchhcC-----------
Confidence            4688999999999999998887644  589999999999999998865  111    366777877531           


Q ss_pred             ccccccccCCCCCCceeEEEEeCChHH---HHHHHHHHhHhcCCCeEEEEeccC
Q 026513          147 DLSSHKIRGISQTEKYDVVIANILLNP---LLQLADHIVSYAKPGAVVGISGIL  197 (237)
Q Consensus       147 ~~~~~~~~~~~~~~~fD~I~~n~~~~~---~~~~l~~~~~~L~~gG~liis~~~  197 (237)
                               ....++||+|+++..+++   ...+++.+.+.|+|||.+++.++.
T Consensus       101 ---------~~~~~~~D~i~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~  145 (223)
T TIGR01934       101 ---------PFEDNSFDAVTIAFGLRNVTDIQKALREMYRVLKPGGRLVILEFS  145 (223)
T ss_pred             ---------CCCCCcEEEEEEeeeeCCcccHHHHHHHHHHHcCCCcEEEEEEec
Confidence                     122468999999776543   456789999999999999987653

Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.

>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase

Probab=99.29  E-value=2.2e-11  Score=107.54  Aligned_cols=127  Identities=17%  Similarity=0.269  Sum_probs=98.8

Q ss_pred             EEeCcccccCCCCchhHHHHHHHHHhhccC--CCeEEEEcCcchHHHHHHHHh--CCCeEEEEeCCHHHHHHHHHHHHHc
Q 026513           41 IILNPGLAFGSGEHATTKLCLLLLRRLIKG--GELFLDYGTGSGILGIAAIKF--GAAMSVGADIDPQAIKSAHQNAALN  116 (237)
Q Consensus        41 ~~~~~~~~f~~g~~~~~~~~~~~l~~~~~~--~~~vLDlG~G~G~~~~~la~~--~~~~v~~vD~s~~~i~~a~~~~~~~  116 (237)
                      +--+|.|.|.   +..+-+++..+.....+  +.+|||+.||+|..++.++..  |..+|+++|+++.+++.+++|++.|
T Consensus        16 vFYNP~~~~n---RDlsv~~~~~~~~~~~~~~~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N   92 (374)
T TIGR00308        16 VFYNPRMQFN---RDLSVTCIQAFDNLYGKECYINIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYN   92 (374)
T ss_pred             cccCchhhcc---ccHHHHHHHHHHHhhCCcCCCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHh
Confidence            4557777777   55566555554432221  358999999999999999876  6789999999999999999999999


Q ss_pred             CCCCCcceEEeccCccccccccccccccccccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEe
Q 026513          117 NIGPKKMKLHLVPDRTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGIS  194 (237)
Q Consensus       117 ~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis  194 (237)
                      ++.+    +.++++|.....                 ..  ...+||+|+.|| +.....+++.+.+.+++||.|+++
T Consensus        93 ~~~~----~~v~~~Da~~~l-----------------~~--~~~~fDvIdlDP-fGs~~~fld~al~~~~~~glL~vT  146 (374)
T TIGR00308        93 SVEN----IEVPNEDAANVL-----------------RY--RNRKFHVIDIDP-FGTPAPFVDSAIQASAERGLLLVT  146 (374)
T ss_pred             CCCc----EEEEchhHHHHH-----------------HH--hCCCCCEEEeCC-CCCcHHHHHHHHHhcccCCEEEEE
Confidence            8764    788889876321                 11  135799999999 454457889999999999999996

This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.

>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []

Probab=99.28  E-value=9.2e-11  Score=97.81  Aligned_cols=130  Identities=18%  Similarity=0.212  Sum_probs=94.5

Q ss_pred             ccCCCeEEEEcCcchHHHHHHHHh--CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccc
Q 026513           68 IKGGELFLDYGTGSGILGIAAIKF--GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVV  145 (237)
Q Consensus        68 ~~~~~~vLDlG~G~G~~~~~la~~--~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  145 (237)
                      +.||.+|||.|+|+|.++..+++.  +..+|+..|+.++.++.|++|++..++..   .+.+.+.|+.+....       
T Consensus        38 i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~---~v~~~~~Dv~~~g~~-------  107 (247)
T PF08704_consen   38 IRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDD---NVTVHHRDVCEEGFD-------  107 (247)
T ss_dssp             --TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCT---TEEEEES-GGCG--S-------
T ss_pred             CCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCC---CceeEecceeccccc-------
Confidence            689999999999999999999974  56899999999999999999999999864   388889998631111       


Q ss_pred             cccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhc-CCCeEEEEeccCCCCHHHHHHHHhhc-cccceeee
Q 026513          146 EDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYA-KPGAVVGISGILSEQLPHIINRYSEF-LEDILVSE  219 (237)
Q Consensus       146 ~~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L-~~gG~liis~~~~~~~~~~~~~~~~~-~~~~~~~~  219 (237)
                               . ..+..+|.||.+.|-.+  ..+..+.+.| ++||++.+-.--.++.......+++. |..+++.+
T Consensus       108 ---------~-~~~~~~DavfLDlp~Pw--~~i~~~~~~L~~~gG~i~~fsP~ieQv~~~~~~L~~~gf~~i~~~E  171 (247)
T PF08704_consen  108 ---------E-ELESDFDAVFLDLPDPW--EAIPHAKRALKKPGGRICCFSPCIEQVQKTVEALREHGFTDIETVE  171 (247)
T ss_dssp             ---------T-T-TTSEEEEEEESSSGG--GGHHHHHHHE-EEEEEEEEEESSHHHHHHHHHHHHHTTEEEEEEEE
T ss_pred             ---------c-cccCcccEEEEeCCCHH--HHHHHHHHHHhcCCceEEEECCCHHHHHHHHHHHHHCCCeeeEEEE
Confidence                     0 11368999999997653  4567788899 89999987544455666666666664 66665543

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.

>PTZ00146 fibrillarin; Provisional

Probab=99.28  E-value=2.5e-10  Score=96.95  Aligned_cols=142  Identities=17%  Similarity=0.147  Sum_probs=90.5

Q ss_pred             ccCCCeEEEEcCcchHHHHHHHHh-C-CCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccc
Q 026513           68 IKGGELFLDYGTGSGILGIAAIKF-G-AAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVV  145 (237)
Q Consensus        68 ~~~~~~vLDlG~G~G~~~~~la~~-~-~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  145 (237)
                      +.++.+|||+|||+|.++..++.. + ..+|+++|+++.+++...+.+...  .|    +.++..|...+.         
T Consensus       130 IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r--~N----I~~I~~Da~~p~---------  194 (293)
T PTZ00146        130 IKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKR--PN----IVPIIEDARYPQ---------  194 (293)
T ss_pred             cCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc--CC----CEEEECCccChh---------
Confidence            578999999999999999999976 3 468999999998765554444322  22    667778865211         


Q ss_pred             cccccccccCCCCCCceeEEEEeCChHH-HHHHHHHHhHhcCCCeEEEEe----cc-CCCCHHHH----HHHHhhc-ccc
Q 026513          146 EDLSSHKIRGISQTEKYDVVIANILLNP-LLQLADHIVSYAKPGAVVGIS----GI-LSEQLPHI----INRYSEF-LED  214 (237)
Q Consensus       146 ~~~~~~~~~~~~~~~~fD~I~~n~~~~~-~~~~l~~~~~~L~~gG~liis----~~-~~~~~~~~----~~~~~~~-~~~  214 (237)
                            ....  ..+.+|+|+++..... ...++.++.++|||||.+++.    ++ ....+.++    ...+.+. |+.
T Consensus       195 ------~y~~--~~~~vDvV~~Dva~pdq~~il~~na~r~LKpGG~~vI~ika~~id~g~~pe~~f~~ev~~L~~~GF~~  266 (293)
T PTZ00146        195 ------KYRM--LVPMVDVIFADVAQPDQARIVALNAQYFLKNGGHFIISIKANCIDSTAKPEVVFASEVQKLKKEGLKP  266 (293)
T ss_pred             ------hhhc--ccCCCCEEEEeCCCcchHHHHHHHHHHhccCCCEEEEEEeccccccCCCHHHHHHHHHHHHHHcCCce
Confidence                  0000  1347999999886433 334566889999999999994    22 22233343    3445543 766


Q ss_pred             ceeeecC----CEEEEEEEEcc
Q 026513          215 ILVSEMD----DWTCVSGKKKR  232 (237)
Q Consensus       215 ~~~~~~~----~w~~~~~~~~~  232 (237)
                      ++..+..    .-.+++++.++
T Consensus       267 ~e~v~L~Py~~~h~~v~~~~~~  288 (293)
T PTZ00146        267 KEQLTLEPFERDHAVVIGVYRP  288 (293)
T ss_pred             EEEEecCCccCCcEEEEEEEcC
Confidence            6554432    33444545443

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=99.28  E-value=3.2e-11  Score=110.25  Aligned_cols=100  Identities=20%  Similarity=0.226  Sum_probs=77.5

Q ss_pred             CCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccccc
Q 026513           70 GGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDLS  149 (237)
Q Consensus        70 ~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~  149 (237)
                      ++.+|||+|||+|.++..+++. ..+|+|+|+++.+++.+++...  ...    ++.++++|+.+..             
T Consensus        37 ~~~~vLDlGcG~G~~~~~la~~-~~~v~giD~s~~~l~~a~~~~~--~~~----~i~~~~~d~~~~~-------------   96 (475)
T PLN02336         37 EGKSVLELGAGIGRFTGELAKK-AGQVIALDFIESVIKKNESING--HYK----NVKFMCADVTSPD-------------   96 (475)
T ss_pred             CCCEEEEeCCCcCHHHHHHHhh-CCEEEEEeCCHHHHHHHHHHhc--cCC----ceEEEEecccccc-------------
Confidence            5679999999999999999987 4679999999999987765321  122    3777788874211             


Q ss_pred             cccccCCCCCCceeEEEEeCChHHH-----HHHHHHHhHhcCCCeEEEEe
Q 026513          150 SHKIRGISQTEKYDVVIANILLNPL-----LQLADHIVSYAKPGAVVGIS  194 (237)
Q Consensus       150 ~~~~~~~~~~~~fD~I~~n~~~~~~-----~~~l~~~~~~L~~gG~liis  194 (237)
                           ...++.+||+|+++.+++++     ..+++++.+.|+|||++++.
T Consensus        97 -----~~~~~~~fD~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~  141 (475)
T PLN02336         97 -----LNISDGSVDLIFSNWLLMYLSDKEVENLAERMVKWLKVGGYIFFR  141 (475)
T ss_pred             -----cCCCCCCEEEEehhhhHHhCCHHHHHHHHHHHHHhcCCCeEEEEE
Confidence                 11235789999999987763     56899999999999999985

>KOG4300 consensus Predicted methyltransferase [General function prediction only]

Probab=99.28  E-value=2.2e-11  Score=97.12  Aligned_cols=111  Identities=14%  Similarity=0.098  Sum_probs=83.0

Q ss_pred             eEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEE-eccCccccccccccccccccccccc
Q 026513           73 LFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLH-LVPDRTFTASMNERVDGVVEDLSSH  151 (237)
Q Consensus        73 ~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~-~~~~d~~~~~~~~~~~~~~~~~~~~  151 (237)
                      .||++|||+|..=...-..+..+|+++|.++.|.+.|.+.+.++.-.    ++. |+.++..+                 
T Consensus        79 ~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k~~----~~~~fvva~ge~-----------------  137 (252)
T KOG4300|consen   79 DVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEKKPL----QVERFVVADGEN-----------------  137 (252)
T ss_pred             ceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhccCc----ceEEEEeechhc-----------------
Confidence            47999999997655554456788999999999999999998877433    254 77787652                 


Q ss_pred             cccCCCCCCceeEEEEeCChH---HHHHHHHHHhHhcCCCeEEEEeccCCCCHHHHHH
Q 026513          152 KIRGISQTEKYDVVIANILLN---PLLQLADHIVSYAKPGAVVGISGILSEQLPHIIN  206 (237)
Q Consensus       152 ~~~~~~~~~~fD~I~~n~~~~---~~~~~l~~~~~~L~~gG~liis~~~~~~~~~~~~  206 (237)
                       +..+ ++++||.|++...+-   ...+.++++.++|+|||++++......+-..+..
T Consensus       138 -l~~l-~d~s~DtVV~TlvLCSve~~~k~L~e~~rlLRpgG~iifiEHva~~y~~~n~  193 (252)
T KOG4300|consen  138 -LPQL-ADGSYDTVVCTLVLCSVEDPVKQLNEVRRLLRPGGRIIFIEHVAGEYGFWNR  193 (252)
T ss_pred             -Cccc-ccCCeeeEEEEEEEeccCCHHHHHHHHHHhcCCCcEEEEEecccccchHHHH
Confidence             3233 478999999988753   3457789999999999999997655444333333

>PRK03612 spermidine synthase; Provisional

Probab=99.28  E-value=3.6e-11  Score=110.87  Aligned_cols=142  Identities=18%  Similarity=0.272  Sum_probs=97.3

Q ss_pred             cCCCeEEEEcCcchHHHHHHHHhCC-CeEEEEeCCHHHHHHHHHHHHHc-----CCCCCcceEEeccCcccccccccccc
Q 026513           69 KGGELFLDYGTGSGILGIAAIKFGA-AMSVGADIDPQAIKSAHQNAALN-----NIGPKKMKLHLVPDRTFTASMNERVD  142 (237)
Q Consensus        69 ~~~~~vLDlG~G~G~~~~~la~~~~-~~v~~vD~s~~~i~~a~~~~~~~-----~~~~~~~~v~~~~~d~~~~~~~~~~~  142 (237)
                      ++.++|||+|||+|..+..+++++. .+++++|+|+++++.++++....     ...+.  +++++.+|..+..      
T Consensus       296 ~~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dp--rv~vi~~Da~~~l------  367 (521)
T PRK03612        296 ARPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDP--RVTVVNDDAFNWL------  367 (521)
T ss_pred             CCCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCC--ceEEEEChHHHHH------
Confidence            4567999999999999999888755 79999999999999999853211     12212  4778888876311      


Q ss_pred             ccccccccccccCCCCCCceeEEEEeCChHH--------HHHHHHHHhHhcCCCeEEEEecc---C-CCCHHHHHHHHhh
Q 026513          143 GVVEDLSSHKIRGISQTEKYDVVIANILLNP--------LLQLADHIVSYAKPGAVVGISGI---L-SEQLPHIINRYSE  210 (237)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~fD~I~~n~~~~~--------~~~~l~~~~~~L~~gG~liis~~---~-~~~~~~~~~~~~~  210 (237)
                                 ..  ..++||+|++|++...        ..++++.+.+.|+|||.+++...   . .....++.+.+++
T Consensus       368 -----------~~--~~~~fDvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~i~~~l~~  434 (521)
T PRK03612        368 -----------RK--LAEKFDVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQSTSPYFAPKAFWSIEATLEA  434 (521)
T ss_pred             -----------Hh--CCCCCCEEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEecCCcccchHHHHHHHHHHHH
Confidence                       11  1468999999976321        13678999999999999998532   1 2222344555554


Q ss_pred             c-c----ccceeeecCCEEEEEEEEc
Q 026513          211 F-L----EDILVSEMDDWTCVSGKKK  231 (237)
Q Consensus       211 ~-~----~~~~~~~~~~w~~~~~~~~  231 (237)
                      . |    -...+...+.|..+.++|+
T Consensus       435 ~gf~v~~~~~~vps~g~w~f~~as~~  460 (521)
T PRK03612        435 AGLATTPYHVNVPSFGEWGFVLAGAG  460 (521)
T ss_pred             cCCEEEEEEeCCCCcchhHHHeeeCC
Confidence            4 4    1112245589999888664

>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional

Probab=99.27  E-value=5.7e-11  Score=98.53  Aligned_cols=103  Identities=23%  Similarity=0.332  Sum_probs=79.7

Q ss_pred             cCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccccc
Q 026513           69 KGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDL  148 (237)
Q Consensus        69 ~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~  148 (237)
                      .++.+|||+|||+|.++..+++.+ .+++++|+++.+++.+++++...+..     +.+...+..+..            
T Consensus        47 ~~~~~vLdiG~G~G~~~~~l~~~~-~~v~~iD~s~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~~------------  108 (233)
T PRK05134         47 LFGKRVLDVGCGGGILSESMARLG-ADVTGIDASEENIEVARLHALESGLK-----IDYRQTTAEELA------------  108 (233)
T ss_pred             CCCCeEEEeCCCCCHHHHHHHHcC-CeEEEEcCCHHHHHHHHHHHHHcCCc-----eEEEecCHHHhh------------
Confidence            467899999999999999888774 56999999999999999988766542     556666654210            


Q ss_pred             ccccccCCCCCCceeEEEEeCChHHH---HHHHHHHhHhcCCCeEEEEecc
Q 026513          149 SSHKIRGISQTEKYDVVIANILLNPL---LQLADHIVSYAKPGAVVGISGI  196 (237)
Q Consensus       149 ~~~~~~~~~~~~~fD~I~~n~~~~~~---~~~l~~~~~~L~~gG~liis~~  196 (237)
                            . ...++||+|++...+++.   ..++..+.+.|+|||.++++..
T Consensus       109 ------~-~~~~~fD~Ii~~~~l~~~~~~~~~l~~~~~~L~~gG~l~v~~~  152 (233)
T PRK05134        109 ------A-EHPGQFDVVTCMEMLEHVPDPASFVRACAKLVKPGGLVFFSTL  152 (233)
T ss_pred             ------h-hcCCCccEEEEhhHhhccCCHHHHHHHHHHHcCCCcEEEEEec
Confidence                  0 124689999997765543   4678999999999999999754

>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase

Probab=99.27  E-value=1.2e-10  Score=95.87  Aligned_cols=103  Identities=22%  Similarity=0.277  Sum_probs=80.6

Q ss_pred             CCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccccc
Q 026513           70 GGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDLS  149 (237)
Q Consensus        70 ~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~  149 (237)
                      .+.+|||+|||+|.++..+++.+. +++++|+++.+++.+++++...+..+    +.+...|..+..             
T Consensus        45 ~~~~vLdlG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~~~----~~~~~~d~~~~~-------------  106 (224)
T TIGR01983        45 FGLRVLDVGCGGGLLSEPLARLGA-NVTGIDASEENIEVAKLHAKKDPLLK----IEYRCTSVEDLA-------------  106 (224)
T ss_pred             CCCeEEEECCCCCHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHHcCCCc----eEEEeCCHHHhh-------------
Confidence            377999999999999998887654 59999999999999999988776532    666677754211             


Q ss_pred             cccccCCCCCCceeEEEEeCChHHH---HHHHHHHhHhcCCCeEEEEecc
Q 026513          150 SHKIRGISQTEKYDVVIANILLNPL---LQLADHIVSYAKPGAVVGISGI  196 (237)
Q Consensus       150 ~~~~~~~~~~~~fD~I~~n~~~~~~---~~~l~~~~~~L~~gG~liis~~  196 (237)
                            .....+||+|+++..+++.   ..++..+.+.|+|||.++++..
T Consensus       107 ------~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~~gG~l~i~~~  150 (224)
T TIGR01983       107 ------EKGAKSFDVVTCMEVLEHVPDPQAFIRACAQLLKPGGILFFSTI  150 (224)
T ss_pred             ------cCCCCCccEEEehhHHHhCCCHHHHHHHHHHhcCCCcEEEEEec
Confidence                  1113689999998766544   4678999999999999998754

This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.

>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes

Probab=99.26  E-value=2.1e-11  Score=100.26  Aligned_cols=129  Identities=19%  Similarity=0.191  Sum_probs=84.7

Q ss_pred             ccCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHH-HHHHcCCCC-------CcceEEeccCccccccccc
Q 026513           68 IKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQ-NAALNNIGP-------KKMKLHLVPDRTFTASMNE  139 (237)
Q Consensus        68 ~~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~-~~~~~~~~~-------~~~~v~~~~~d~~~~~~~~  139 (237)
                      ..++.+||..|||.|.-...|+..|. +|+|+|+|+.+++.+.+ +........       ..-++.+.++|+++...  
T Consensus        35 ~~~~~rvLvPgCG~g~D~~~La~~G~-~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~--  111 (218)
T PF05724_consen   35 LKPGGRVLVPGCGKGYDMLWLAEQGH-DVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPP--  111 (218)
T ss_dssp             TSTSEEEEETTTTTSCHHHHHHHTTE-EEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGG--
T ss_pred             CCCCCeEEEeCCCChHHHHHHHHCCC-eEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCCh--
Confidence            45677999999999999999999976 69999999999999843 221111110       01136788999884221  


Q ss_pred             cccccccccccccccCCCCCCceeEEEEeC-----ChHHHHHHHHHHhHhcCCCeEEEEeccC-----------CCCHHH
Q 026513          140 RVDGVVEDLSSHKIRGISQTEKYDVVIANI-----LLNPLLQLADHIVSYAKPGAVVGISGIL-----------SEQLPH  203 (237)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~-----~~~~~~~~l~~~~~~L~~gG~liis~~~-----------~~~~~~  203 (237)
                                       ...++||+|+--.     +.....++.+.+.++|+|||.+++.++.           .-...+
T Consensus       112 -----------------~~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lLi~l~~~~~~~~GPPf~v~~~e  174 (218)
T PF05724_consen  112 -----------------EDVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLLITLEYPQGEMEGPPFSVTEEE  174 (218)
T ss_dssp             -----------------SCHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEEEEEES-CSCSSSSS----HHH
T ss_pred             -----------------hhcCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEEEEEEcCCcCCCCcCCCCCHHH
Confidence                             1125899998533     3355568899999999999995443221           223667


Q ss_pred             HHHHHhhccccce
Q 026513          204 IINRYSEFLEDIL  216 (237)
Q Consensus       204 ~~~~~~~~~~~~~  216 (237)
                      +...+.+.|+...
T Consensus       175 v~~l~~~~f~i~~  187 (218)
T PF05724_consen  175 VRELFGPGFEIEE  187 (218)
T ss_dssp             HHHHHTTTEEEEE
T ss_pred             HHHHhcCCcEEEE
Confidence            7777776665443

Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.

>PLN02589 caffeoyl-CoA O-methyltransferase

Probab=99.26  E-value=1.1e-10  Score=97.59  Aligned_cols=111  Identities=11%  Similarity=0.196  Sum_probs=88.4

Q ss_pred             CCCeEEEEcCcchHHHHHHHHh--CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccc
Q 026513           70 GGELFLDYGTGSGILGIAAIKF--GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVED  147 (237)
Q Consensus        70 ~~~~vLDlG~G~G~~~~~la~~--~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  147 (237)
                      +.++|||+|+++|+-++.++..  ...+++.+|.++...+.|++++...|+.+   +++++.++..+.         +..
T Consensus        79 ~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~---~I~~~~G~a~e~---------L~~  146 (247)
T PLN02589         79 NAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAH---KIDFREGPALPV---------LDQ  146 (247)
T ss_pred             CCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCC---ceEEEeccHHHH---------HHH
Confidence            4568999999999999988863  35689999999999999999999999876   688999987631         111


Q ss_pred             cccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEecc
Q 026513          148 LSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGI  196 (237)
Q Consensus       148 ~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~~  196 (237)
                      +    ...-...++||+||++..-..+..++..+.++|+|||.+++..+
T Consensus       147 l----~~~~~~~~~fD~iFiDadK~~Y~~y~~~~l~ll~~GGviv~DNv  191 (247)
T PLN02589        147 M----IEDGKYHGTFDFIFVDADKDNYINYHKRLIDLVKVGGVIGYDNT  191 (247)
T ss_pred             H----HhccccCCcccEEEecCCHHHhHHHHHHHHHhcCCCeEEEEcCC
Confidence            0    00000136899999999888888999999999999999998644

>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]

Probab=99.25  E-value=6.9e-11  Score=101.79  Aligned_cols=105  Identities=22%  Similarity=0.259  Sum_probs=85.7

Q ss_pred             hccCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccC-ccccccccccccccc
Q 026513           67 LIKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPD-RTFTASMNERVDGVV  145 (237)
Q Consensus        67 ~~~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~-d~~~~~~~~~~~~~~  145 (237)
                      ..++|..|||..||||++.+.+...|.. ++|.|++..|++-|+.|++..++..    ..+... |+...+         
T Consensus       194 ~v~~G~~vlDPFcGTGgiLiEagl~G~~-viG~Did~~mv~gak~Nl~~y~i~~----~~~~~~~Da~~lp---------  259 (347)
T COG1041         194 RVKRGELVLDPFCGTGGILIEAGLMGAR-VIGSDIDERMVRGAKINLEYYGIED----YPVLKVLDATNLP---------  259 (347)
T ss_pred             ccccCCEeecCcCCccHHHHhhhhcCce-EeecchHHHHHhhhhhhhhhhCcCc----eeEEEecccccCC---------
Confidence            3678999999999999999999988655 9999999999999999999998775    545555 766321         


Q ss_pred             cccccccccCCCCCCceeEEEEeCCh------------HHHHHHHHHHhHhcCCCeEEEEecc
Q 026513          146 EDLSSHKIRGISQTEKYDVVIANILL------------NPLLQLADHIVSYAKPGAVVGISGI  196 (237)
Q Consensus       146 ~~~~~~~~~~~~~~~~fD~I~~n~~~------------~~~~~~l~~~~~~L~~gG~liis~~  196 (237)
                                 .++.++|.|+++||+            ..+.++++.+.++|++||++++...
T Consensus       260 -----------l~~~~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p  311 (347)
T COG1041         260 -----------LRDNSVDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAP  311 (347)
T ss_pred             -----------CCCCccceEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecC
Confidence                       223469999999994            3356789999999999999998644

>PLN02585 magnesium protoporphyrin IX methyltransferase

Probab=99.25  E-value=1.5e-10  Score=100.19  Aligned_cols=115  Identities=23%  Similarity=0.187  Sum_probs=75.7

Q ss_pred             hHHHHHHHHHhh-ccCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCC-CcceEEeccCccc
Q 026513           56 TTKLCLLLLRRL-IKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGP-KKMKLHLVPDRTF  133 (237)
Q Consensus        56 ~~~~~~~~l~~~-~~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~-~~~~v~~~~~d~~  133 (237)
                      +.+.++.++... ..++.+|||+|||+|.+++.+++.+ .+|+|+|+|+.|++.|++++....... ....+.+...|+.
T Consensus       129 ~v~~~l~~l~~~~~~~~~~VLDlGcGtG~~a~~la~~g-~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~  207 (315)
T PLN02585        129 TVEKVLLWLAEDGSLAGVTVCDAGCGTGSLAIPLALEG-AIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLE  207 (315)
T ss_pred             HHHHHHHHHHhcCCCCCCEEEEecCCCCHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchh
Confidence            334444554332 1357899999999999999999885 579999999999999999987542210 0113566666653


Q ss_pred             cccccccccccccccccccccCCCCCCceeEEEEeCChHHH-----HHHHHHHhHhcCCCeEEEEecc
Q 026513          134 TASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLNPL-----LQLADHIVSYAKPGAVVGISGI  196 (237)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~~~~-----~~~l~~~~~~L~~gG~liis~~  196 (237)
                                           .+  +++||+|+|..++.++     ..++..+.. +.++ .+++++.
T Consensus       208 ---------------------~l--~~~fD~Vv~~~vL~H~p~~~~~~ll~~l~~-l~~g-~liIs~~  250 (315)
T PLN02585        208 ---------------------SL--SGKYDTVTCLDVLIHYPQDKADGMIAHLAS-LAEK-RLIISFA  250 (315)
T ss_pred             ---------------------hc--CCCcCEEEEcCEEEecCHHHHHHHHHHHHh-hcCC-EEEEEeC
Confidence                                 11  4689999987665433     234555554 3454 4455543

>COG2521 Predicted archaeal methyltransferase [General function prediction only]

Probab=99.24  E-value=6e-11  Score=96.24  Aligned_cols=171  Identities=18%  Similarity=0.172  Sum_probs=120.9

Q ss_pred             ceeEEeCcc-cccCCCCchhHHHHHHHHHhhccCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHc
Q 026513           38 ATNIILNPG-LAFGSGEHATTKLCLLLLRRLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALN  116 (237)
Q Consensus        38 ~~~~~~~~~-~~f~~g~~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~  116 (237)
                      ..+++|+.- |.-..+..|........-.-..+.|.+|||.++|-|+.++.+++.|+.+|+.+|.+|..++.|+-|-...
T Consensus       101 ~PTiEIdGIrMhrt~~tdP~~Dt~~Kv~~V~~~~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~lNPwSr  180 (287)
T COG2521         101 APTIEIDGIRMHRTKGTDPLEDTLAKVELVKVKRGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAKLNPWSR  180 (287)
T ss_pred             CCeEEEccEEEecccCcCcHHHHHhhhheeccccCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEeeccCCCCc
Confidence            346677665 7766666777666655543335579999999999999999999999999999999999999998876555


Q ss_pred             CCCCCcceEEeccCccccccccccccccccccccccccCCCCCCceeEEEEeCChHHH------HHHHHHHhHhcCCCeE
Q 026513          117 NIGPKKMKLHLVPDRTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLNPL------LQLADHIVSYAKPGAV  190 (237)
Q Consensus       117 ~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~~~~------~~~l~~~~~~L~~gG~  190 (237)
                      ++...  .++++.+|..+.                 + .-.++.+||+|+-+||+-..      .++..++.+.|+|||.
T Consensus       181 ~l~~~--~i~iilGD~~e~-----------------V-~~~~D~sfDaIiHDPPRfS~AgeLYseefY~El~RiLkrgGr  240 (287)
T COG2521         181 ELFEI--AIKIILGDAYEV-----------------V-KDFDDESFDAIIHDPPRFSLAGELYSEEFYRELYRILKRGGR  240 (287)
T ss_pred             ccccc--ccEEecccHHHH-----------------H-hcCCccccceEeeCCCccchhhhHhHHHHHHHHHHHcCcCCc
Confidence            54432  468899998731                 1 22347899999999995322      3678999999999999


Q ss_pred             EEEe-ccC------CCCHHHHHHHHhhc-cccceeeecCCEEEEEEEE
Q 026513          191 VGIS-GIL------SEQLPHIINRYSEF-LEDILVSEMDDWTCVSGKK  230 (237)
Q Consensus       191 liis-~~~------~~~~~~~~~~~~~~-~~~~~~~~~~~w~~~~~~~  230 (237)
                      ++.- +..      .+-...+...+..- |..+  ....+|.-+++.|
T Consensus       241 lFHYvG~Pg~ryrG~d~~~gVa~RLr~vGF~~v--~~~~~~~gv~A~k  286 (287)
T COG2521         241 LFHYVGNPGKRYRGLDLPKGVAERLRRVGFEVV--KKVREALGVVAVK  286 (287)
T ss_pred             EEEEeCCCCcccccCChhHHHHHHHHhcCceee--eeehhccceEEec
Confidence            9862 221      22345666666654 5433  3444555555444

>TIGR02081 metW methionine biosynthesis protein MetW

Probab=99.24  E-value=3.7e-11  Score=97.08  Aligned_cols=102  Identities=18%  Similarity=0.207  Sum_probs=69.7

Q ss_pred             HHhhccCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccc
Q 026513           64 LRRLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDG  143 (237)
Q Consensus        64 l~~~~~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~  143 (237)
                      +...++++.+|||+|||+|.++..++......++|+|+++.+++.++++    +       +.++.+|+.+.        
T Consensus         7 i~~~i~~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~~----~-------~~~~~~d~~~~--------   67 (194)
T TIGR02081         7 ILNLIPPGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVAR----G-------VNVIQGDLDEG--------   67 (194)
T ss_pred             HHHhcCCCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHHc----C-------CeEEEEEhhhc--------
Confidence            3344567889999999999999888766556789999999999888642    2       34556665320        


Q ss_pred             cccccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEe
Q 026513          144 VVEDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGIS  194 (237)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis  194 (237)
                               + ...++++||+|+++.+++++.+....+..++++++.++++
T Consensus        68 ---------l-~~~~~~sfD~Vi~~~~l~~~~d~~~~l~e~~r~~~~~ii~  108 (194)
T TIGR02081        68 ---------L-EAFPDKSFDYVILSQTLQATRNPEEILDEMLRVGRHAIVS  108 (194)
T ss_pred             ---------c-cccCCCCcCEEEEhhHhHcCcCHHHHHHHHHHhCCeEEEE
Confidence                     0 1123568999999998887754433344445555655553

This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.

>PRK06202 hypothetical protein; Provisional

Probab=99.23  E-value=9e-11  Score=97.44  Aligned_cols=102  Identities=24%  Similarity=0.328  Sum_probs=71.7

Q ss_pred             cCCCeEEEEcCcchHHHHHHHHh----C-CCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccc
Q 026513           69 KGGELFLDYGTGSGILGIAAIKF----G-AAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDG  143 (237)
Q Consensus        69 ~~~~~vLDlG~G~G~~~~~la~~----~-~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~  143 (237)
                      .++.+|||+|||+|.++..++..    | ..+|+|+|+|+.+++.|+++....++.     +.....+..          
T Consensus        59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~-----~~~~~~~~l----------  123 (232)
T PRK06202         59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPGVT-----FRQAVSDEL----------  123 (232)
T ss_pred             CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCCCe-----EEEEecccc----------
Confidence            45679999999999998887742    2 358999999999999999876544332     332222221          


Q ss_pred             cccccccccccCCCCCCceeEEEEeCChHHHH-----HHHHHHhHhcCCCeEEEEeccCCC
Q 026513          144 VVEDLSSHKIRGISQTEKYDVVIANILLNPLL-----QLADHIVSYAKPGAVVGISGILSE  199 (237)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~fD~I~~n~~~~~~~-----~~l~~~~~~L~~gG~liis~~~~~  199 (237)
                                 .. .+++||+|+++..++++.     .+++++.+.++  |.+++..+...
T Consensus       124 -----------~~-~~~~fD~V~~~~~lhh~~d~~~~~~l~~~~r~~~--~~~~i~dl~~~  170 (232)
T PRK06202        124 -----------VA-EGERFDVVTSNHFLHHLDDAEVVRLLADSAALAR--RLVLHNDLIRS  170 (232)
T ss_pred             -----------cc-cCCCccEEEECCeeecCChHHHHHHHHHHHHhcC--eeEEEeccccC
Confidence                       11 257899999998876653     47888888887  56666554433

>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated

Probab=99.23  E-value=1.3e-10  Score=95.94  Aligned_cols=106  Identities=23%  Similarity=0.278  Sum_probs=76.0

Q ss_pred             HHHHHHHhh-ccCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccc
Q 026513           59 LCLLLLRRL-IKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASM  137 (237)
Q Consensus        59 ~~~~~l~~~-~~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~  137 (237)
                      .+...+... ..++.+|||+|||+|.++..++..+. +|+|+|+|+.+++.|++++...+..+   ++.+..+|..    
T Consensus        51 ~~~~~l~~~~~~~~~~vLDvGcG~G~~~~~l~~~~~-~v~~~D~s~~~i~~a~~~~~~~~~~~---~i~~~~~d~~----  122 (230)
T PRK07580         51 TVLSWLPADGDLTGLRILDAGCGVGSLSIPLARRGA-KVVASDISPQMVEEARERAPEAGLAG---NITFEVGDLE----  122 (230)
T ss_pred             HHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCcc---CcEEEEcCch----
Confidence            344444331 34678999999999999999988754 59999999999999999988776632   3777777742    


Q ss_pred             cccccccccccccccccCCCCCCceeEEEEeCChHH-----HHHHHHHHhHhcCCCeEE
Q 026513          138 NERVDGVVEDLSSHKIRGISQTEKYDVVIANILLNP-----LLQLADHIVSYAKPGAVV  191 (237)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~~~-----~~~~l~~~~~~L~~gG~l  191 (237)
                                       .  ..++||+|++..++++     ...+++.+.+.+++++.+
T Consensus       123 -----------------~--~~~~fD~v~~~~~l~~~~~~~~~~~l~~l~~~~~~~~~i  162 (230)
T PRK07580        123 -----------------S--LLGRFDTVVCLDVLIHYPQEDAARMLAHLASLTRGSLIF  162 (230)
T ss_pred             -----------------h--ccCCcCEEEEcchhhcCCHHHHHHHHHHHHhhcCCeEEE
Confidence                             1  1468999999776643     235667777766544443

>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes

Probab=99.23  E-value=7.1e-11  Score=102.74  Aligned_cols=123  Identities=22%  Similarity=0.217  Sum_probs=84.3

Q ss_pred             CCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCC------CCCcceEEeccCccccccccccccc
Q 026513           70 GGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNI------GPKKMKLHLVPDRTFTASMNERVDG  143 (237)
Q Consensus        70 ~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~------~~~~~~v~~~~~d~~~~~~~~~~~~  143 (237)
                      ++.+|||+|||-|+-..-....+...++|+|++...|+.|+++.....-      ....+...++.+|.+...+.     
T Consensus        62 ~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~-----  136 (331)
T PF03291_consen   62 PGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLR-----  136 (331)
T ss_dssp             TT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHH-----
T ss_pred             CCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhh-----
Confidence            7889999999999888877777889999999999999999998832110      01123567788887743221     


Q ss_pred             cccccccccccCCCC-CCceeEEEEeCChHHH-------HHHHHHHhHhcCCCeEEEEeccCCCCHHHHHHHHhh
Q 026513          144 VVEDLSSHKIRGISQ-TEKYDVVIANILLNPL-------LQLADHIVSYAKPGAVVGISGILSEQLPHIINRYSE  210 (237)
Q Consensus       144 ~~~~~~~~~~~~~~~-~~~fD~I~~n~~~~~~-------~~~l~~~~~~L~~gG~liis~~~~~~~~~~~~~~~~  210 (237)
                                ..+.+ ..+||+|-|...+|+.       +.++.++...|+|||+++...   .+...+...+..
T Consensus       137 ----------~~~~~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~---~d~~~i~~~l~~  198 (331)
T PF03291_consen  137 ----------EKLPPRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTT---PDSDEIVKRLRE  198 (331)
T ss_dssp             ----------CTSSSTTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEE---E-HHHHHCCHHC
T ss_pred             ----------hhccccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEe---cCHHHHHHHHHh
Confidence                      12222 2599999999887653       578999999999999999973   444556555544

The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.

>PLN02823 spermine synthase

Probab=99.22  E-value=6e-10  Score=97.13  Aligned_cols=145  Identities=17%  Similarity=0.251  Sum_probs=99.3

Q ss_pred             cCCCeEEEEcCcchHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccc
Q 026513           69 KGGELFLDYGTGSGILGIAAIKF-GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVED  147 (237)
Q Consensus        69 ~~~~~vLDlG~G~G~~~~~la~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  147 (237)
                      +..++||.+|+|.|..+..+.+. +..+++++|+++.+++.|++.+..++-....-+++++.+|.....         + 
T Consensus       102 ~~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L---------~-  171 (336)
T PLN02823        102 PNPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAEL---------E-  171 (336)
T ss_pred             CCCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHH---------h-
Confidence            34578999999999999988875 567899999999999999998754321111125788889887421         0 


Q ss_pred             cccccccCCCCCCceeEEEEeCCh--------HH-HHHHHH-HHhHhcCCCeEEEEecc----CC--CCHHHHHHHHhhc
Q 026513          148 LSSHKIRGISQTEKYDVVIANILL--------NP-LLQLAD-HIVSYAKPGAVVGISGI----LS--EQLPHIINRYSEF  211 (237)
Q Consensus       148 ~~~~~~~~~~~~~~fD~I~~n~~~--------~~-~~~~l~-~~~~~L~~gG~liis~~----~~--~~~~~~~~~~~~~  211 (237)
                             .  ..++||+|+++.+-        +. ..++++ .+.+.|+|||++++..-    +.  .....+...++..
T Consensus       172 -------~--~~~~yDvIi~D~~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q~~s~~~~~~~~~~~~i~~tl~~v  242 (336)
T PLN02823        172 -------K--RDEKFDVIIGDLADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQAGPAGILTHKEVFSSIYNTLRQV  242 (336)
T ss_pred             -------h--CCCCccEEEecCCCccccCcchhhccHHHHHHHHHHhcCCCcEEEEeccCcchhccHHHHHHHHHHHHHh
Confidence                   1  24689999998421        11 246787 89999999999987521    11  1134455556665


Q ss_pred             cccceee------ecCCEEEEEEEEcc
Q 026513          212 LEDILVS------EMDDWTCVSGKKKR  232 (237)
Q Consensus       212 ~~~~~~~------~~~~w~~~~~~~~~  232 (237)
                      |..+...      ..+.|..+++++.+
T Consensus       243 F~~v~~y~~~vPsf~~~w~f~~aS~~~  269 (336)
T PLN02823        243 FKYVVPYTAHVPSFADTWGWVMASDHP  269 (336)
T ss_pred             CCCEEEEEeecCCCCCceEEEEEeCCc
Confidence            6555442      23569999998754

>PRK11727 23S rRNA mA1618 methyltransferase; Provisional

Probab=99.22  E-value=5.5e-11  Score=102.77  Aligned_cols=84  Identities=25%  Similarity=0.317  Sum_probs=60.4

Q ss_pred             CCCeEEEEcCcchHHHHHHH-HhCCCeEEEEeCCHHHHHHHHHHHHHc-CCCCCcceEEecc-Ccccccccccccccccc
Q 026513           70 GGELFLDYGTGSGILGIAAI-KFGAAMSVGADIDPQAIKSAHQNAALN-NIGPKKMKLHLVP-DRTFTASMNERVDGVVE  146 (237)
Q Consensus        70 ~~~~vLDlG~G~G~~~~~la-~~~~~~v~~vD~s~~~i~~a~~~~~~~-~~~~~~~~v~~~~-~d~~~~~~~~~~~~~~~  146 (237)
                      ++.++||||||+|.+...++ +....+++|+|+++.+++.|++|+..+ ++..   ++.+.. .+..+.           
T Consensus       114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~---~I~~~~~~~~~~i-----------  179 (321)
T PRK11727        114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNG---AIRLRLQKDSKAI-----------  179 (321)
T ss_pred             CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcC---cEEEEEccchhhh-----------
Confidence            45799999999987766665 445678999999999999999999999 6765   355532 222110           


Q ss_pred             ccccccccCC-CCCCceeEEEEeCChHH
Q 026513          147 DLSSHKIRGI-SQTEKYDVVIANILLNP  173 (237)
Q Consensus       147 ~~~~~~~~~~-~~~~~fD~I~~n~~~~~  173 (237)
                            .... ...++||+|+||||++.
T Consensus       180 ------~~~i~~~~~~fDlivcNPPf~~  201 (321)
T PRK11727        180 ------FKGIIHKNERFDATLCNPPFHA  201 (321)
T ss_pred             ------hhcccccCCceEEEEeCCCCcC
Confidence                  0011 13568999999999743

>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2

Probab=99.20  E-value=9.6e-11  Score=94.80  Aligned_cols=119  Identities=16%  Similarity=0.203  Sum_probs=88.3

Q ss_pred             CCeEEEEcCcchHHHHHHHH-hCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccccc
Q 026513           71 GELFLDYGTGSGILGIAAIK-FGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDLS  149 (237)
Q Consensus        71 ~~~vLDlG~G~G~~~~~la~-~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~  149 (237)
                      ...+||||||.|.+.+.+|. .+...++|+|+....+..+.+.+...+++|    +.++++|+..               
T Consensus        18 ~~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~N----v~~~~~da~~---------------   78 (195)
T PF02390_consen   18 NPLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKN----VRFLRGDARE---------------   78 (195)
T ss_dssp             CEEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSS----EEEEES-CTT---------------
T ss_pred             CCeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccc----eEEEEccHHH---------------
Confidence            34899999999999999885 588899999999999999999999999997    9999999763               


Q ss_pred             cccccCCCCCCceeEEEEeCChHH-----------HHHHHHHHhHhcCCCeEEEEeccCCCCHHHHHHHHhh
Q 026513          150 SHKIRGISQTEKYDVVIANILLNP-----------LLQLADHIVSYAKPGAVVGISGILSEQLPHIINRYSE  210 (237)
Q Consensus       150 ~~~~~~~~~~~~fD~I~~n~~~~~-----------~~~~l~~~~~~L~~gG~liis~~~~~~~~~~~~~~~~  210 (237)
                        .+..+.+++++|-|+.+.|=.+           ...++..+.+.|+|||.+.+.+-..+-.......+..
T Consensus        79 --~l~~~~~~~~v~~i~i~FPDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD~~~y~~~~~~~~~~  148 (195)
T PF02390_consen   79 --LLRRLFPPGSVDRIYINFPDPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATDVEEYAEWMLEQFEE  148 (195)
T ss_dssp             --HHHHHSTTTSEEEEEEES-----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES-HHHHHHHHHHHHH
T ss_pred             --HHhhcccCCchheEEEeCCCCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHh
Confidence              1223344689999999887322           2478999999999999999964444444444444444

1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....

>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family

Probab=99.20  E-value=5.6e-11  Score=96.19  Aligned_cols=126  Identities=21%  Similarity=0.353  Sum_probs=83.9

Q ss_pred             ceeEEeCcc-cccCCCCchhHHHHHHHHHhhccCCCeEEEEcCcchHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHH
Q 026513           38 ATNIILNPG-LAFGSGEHATTKLCLLLLRRLIKGGELFLDYGTGSGILGIAAIKF-GAAMSVGADIDPQAIKSAHQNAAL  115 (237)
Q Consensus        38 ~~~~~~~~~-~~f~~g~~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~la~~-~~~~v~~vD~s~~~i~~a~~~~~~  115 (237)
                      ...+.++.. ..|.++... .+   ..+.+...+|.+|+|+.||.|.+++.+++. ....|+++|++|.+++..++|++.
T Consensus        72 G~~f~~D~~kvyfs~rl~~-Er---~Ri~~~v~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~l  147 (200)
T PF02475_consen   72 GIRFKVDLSKVYFSPRLST-ER---RRIANLVKPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRL  147 (200)
T ss_dssp             TEEEEEETTTS---GGGHH-HH---HHHHTC--TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHH
T ss_pred             CEEEEEccceEEEccccHH-HH---HHHHhcCCcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHH
Confidence            356666665 444443222 22   222334678999999999999999999974 467799999999999999999999


Q ss_pred             cCCCCCcceEEeccCccccccccccccccccccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEE
Q 026513          116 NNIGPKKMKLHLVPDRTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVG  192 (237)
Q Consensus       116 ~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~li  192 (237)
                      |++.+   .+..+++|..+                     +.....||.|+++.|-... .++..+..++++||.+-
T Consensus       148 Nkv~~---~i~~~~~D~~~---------------------~~~~~~~drvim~lp~~~~-~fl~~~~~~~~~~g~ih  199 (200)
T PF02475_consen  148 NKVEN---RIEVINGDARE---------------------FLPEGKFDRVIMNLPESSL-EFLDAALSLLKEGGIIH  199 (200)
T ss_dssp             TT-TT---TEEEEES-GGG------------------------TT-EEEEEE--TSSGG-GGHHHHHHHEEEEEEEE
T ss_pred             cCCCC---eEEEEcCCHHH---------------------hcCccccCEEEECChHHHH-HHHHHHHHHhcCCcEEE
Confidence            99986   47888999863                     2226799999999875433 57788889999998763

Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.

>PRK13256 thiopurine S-methyltransferase; Reviewed

Probab=99.19  E-value=7.8e-10  Score=91.11  Aligned_cols=126  Identities=12%  Similarity=0.115  Sum_probs=87.0

Q ss_pred             cCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHH-------cCC-CCCcceEEeccCcccccccccc
Q 026513           69 KGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAAL-------NNI-GPKKMKLHLVPDRTFTASMNER  140 (237)
Q Consensus        69 ~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~-------~~~-~~~~~~v~~~~~d~~~~~~~~~  140 (237)
                      .++.+||+.|||.|.-+..|+..|.. |+|+|+|+.+++.+.+....       ... ......+.+.++|+++....  
T Consensus        42 ~~~~rvLvPgCGkg~D~~~LA~~G~~-V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~--  118 (226)
T PRK13256         42 NDSSVCLIPMCGCSIDMLFFLSKGVK-VIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKI--  118 (226)
T ss_pred             CCCCeEEEeCCCChHHHHHHHhCCCc-EEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCcc--
Confidence            45689999999999999999999876 99999999999987552100       000 00112478889998842100  


Q ss_pred             ccccccccccccccCCCCCCceeEEEEe-----CChHHHHHHHHHHhHhcCCCeEEEEeccC----------CCCHHHHH
Q 026513          141 VDGVVEDLSSHKIRGISQTEKYDVVIAN-----ILLNPLLQLADHIVSYAKPGAVVGISGIL----------SEQLPHII  205 (237)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~fD~I~~n-----~~~~~~~~~l~~~~~~L~~gG~liis~~~----------~~~~~~~~  205 (237)
                                     ....++||+|+--     .+-+...++++.+.++|+|||.+++..+.          .-...++.
T Consensus       119 ---------------~~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~~~~~~~~~GPPf~v~~~e~~  183 (226)
T PRK13256        119 ---------------ANNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLVMEHDKKSQTPPYSVTQAELI  183 (226)
T ss_pred             ---------------ccccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEEEecCCCCCCCCCcCCHHHHH
Confidence                           0113579998643     33455568899999999999999886442          12356777


Q ss_pred             HHHhhcc
Q 026513          206 NRYSEFL  212 (237)
Q Consensus       206 ~~~~~~~  212 (237)
                      ..+.+.|
T Consensus       184 ~lf~~~~  190 (226)
T PRK13256        184 KNFSAKI  190 (226)
T ss_pred             HhccCCc
Confidence            7776654

>KOG2899 consensus Predicted methyltransferase [General function prediction only]

Probab=99.14  E-value=3e-10  Score=92.68  Aligned_cols=134  Identities=22%  Similarity=0.259  Sum_probs=79.3

Q ss_pred             HHHHHHhhccCCCeEEEEcCcchHHHHHHHH-hCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccc-----
Q 026513           60 CLLLLRRLIKGGELFLDYGTGSGILGIAAIK-FGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTF-----  133 (237)
Q Consensus        60 ~~~~l~~~~~~~~~vLDlG~G~G~~~~~la~-~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~-----  133 (237)
                      .+..++.-.-.+..+|||||.+|.+++.+++ ++...++|+||++..|..|+++++...--...+.-.+...+-.     
T Consensus        48 rLk~L~~~~f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~i  127 (288)
T KOG2899|consen   48 RLKVLEKDWFEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPI  127 (288)
T ss_pred             hhhhccccccCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCccccccccccc
Confidence            3444443333467899999999999999996 5888899999999999999998753210000000000000000     


Q ss_pred             -------cccccccccccccc-----cccccccCCCCCCceeEEEEeCC---------hHHHHHHHHHHhHhcCCCeEEE
Q 026513          134 -------TASMNERVDGVVED-----LSSHKIRGISQTEKYDVVIANIL---------LNPLLQLADHIVSYAKPGAVVG  192 (237)
Q Consensus       134 -------~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~fD~I~~n~~---------~~~~~~~l~~~~~~L~~gG~li  192 (237)
                             .+...+-.++..-.     +...++- ......||+|+|-..         =+.+..++.++.++|.|||+|+
T Consensus       128 s~~~~a~~a~t~~~p~n~~f~~~n~vle~~dfl-~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLv  206 (288)
T KOG2899|consen  128 SQRNEADRAFTTDFPDNVWFQKENYVLESDDFL-DMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILV  206 (288)
T ss_pred             cccccccccccccCCcchhcccccEEEecchhh-hhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEE
Confidence                   00000000000000     0000111 123568999998553         2667899999999999999999


Q ss_pred             Ee
Q 026513          193 IS  194 (237)
Q Consensus       193 is  194 (237)
                      +.
T Consensus       207 vE  208 (288)
T KOG2899|consen  207 VE  208 (288)
T ss_pred             Ec
Confidence            94

>COG2520 Predicted methyltransferase [General function prediction only]

Probab=99.14  E-value=5.2e-10  Score=96.94  Aligned_cols=133  Identities=18%  Similarity=0.238  Sum_probs=103.4

Q ss_pred             eeEEeCcc-cccCCCCchhHHHHHHHHHhhccCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcC
Q 026513           39 TNIILNPG-LAFGSGEHATTKLCLLLLRRLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNN  117 (237)
Q Consensus        39 ~~~~~~~~-~~f~~g~~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~  117 (237)
                      ..+.++.. ..|+.+....-..+...    ..+|.+|+|..+|-|.+++.+|..+..+|+++|++|.+++..++|++.|+
T Consensus       160 ~~f~vD~~Kv~Fsprl~~ER~Rva~~----v~~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~eNi~LN~  235 (341)
T COG2520         160 CRFKVDVAKVYFSPRLSTERARVAEL----VKEGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRLNK  235 (341)
T ss_pred             EEEEEchHHeEECCCchHHHHHHHhh----hcCCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHHHHHHhcC
Confidence            56666666 56665554443333333    36699999999999999999999988889999999999999999999999


Q ss_pred             CCCCcceEEeccCccccccccccccccccccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEeccC
Q 026513          118 IGPKKMKLHLVPDRTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGIL  197 (237)
Q Consensus       118 ~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~~~  197 (237)
                      +.+   .+..+++|..+.                    ...-+.+|-|+.+.|-. ..+++..+.+.+++||.+-+-.+.
T Consensus       236 v~~---~v~~i~gD~rev--------------------~~~~~~aDrIim~~p~~-a~~fl~~A~~~~k~~g~iHyy~~~  291 (341)
T COG2520         236 VEG---RVEPILGDAREV--------------------APELGVADRIIMGLPKS-AHEFLPLALELLKDGGIIHYYEFV  291 (341)
T ss_pred             ccc---eeeEEeccHHHh--------------------hhccccCCEEEeCCCCc-chhhHHHHHHHhhcCcEEEEEecc
Confidence            987   588999998731                    11126899999988653 346778888999999999886654


Q ss_pred             CC
Q 026513          198 SE  199 (237)
Q Consensus       198 ~~  199 (237)
                      .+
T Consensus       292 ~e  293 (341)
T COG2520         292 PE  293 (341)
T ss_pred             ch
Confidence            43

>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]

Probab=99.13  E-value=3.4e-10  Score=97.14  Aligned_cols=101  Identities=20%  Similarity=0.219  Sum_probs=80.3

Q ss_pred             cCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccccc
Q 026513           69 KGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDL  148 (237)
Q Consensus        69 ~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~  148 (237)
                      -.++.|||+|||+|.+++..|+.|+.+|+|+|.|.-+ +.|++.+..|++.+   .++++.+.+.+.             
T Consensus        59 f~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~ia-~~a~~iv~~N~~~~---ii~vi~gkvEdi-------------  121 (346)
T KOG1499|consen   59 FKDKTVLDVGCGTGILSMFAAKAGARKVYAVEASSIA-DFARKIVKDNGLED---VITVIKGKVEDI-------------  121 (346)
T ss_pred             cCCCEEEEcCCCccHHHHHHHHhCcceEEEEechHHH-HHHHHHHHhcCccc---eEEEeecceEEE-------------
Confidence            4689999999999999999999999999999999955 99999999999987   588888887632             


Q ss_pred             ccccccCCCCCCceeEEEEeCChHHH------HHHHHHHhHhcCCCeEEEE
Q 026513          149 SSHKIRGISQTEKYDVVIANILLNPL------LQLADHIVSYAKPGAVVGI  193 (237)
Q Consensus       149 ~~~~~~~~~~~~~fD~I~~n~~~~~~------~~~l~~~~~~L~~gG~lii  193 (237)
                            .+ |.++.|+|++-.+-..+      ..++-.=-+.|+|||.++=
T Consensus       122 ------~L-P~eKVDiIvSEWMGy~Ll~EsMldsVl~ARdkwL~~~G~i~P  165 (346)
T KOG1499|consen  122 ------EL-PVEKVDIIVSEWMGYFLLYESMLDSVLYARDKWLKEGGLIYP  165 (346)
T ss_pred             ------ec-CccceeEEeehhhhHHHHHhhhhhhhhhhhhhccCCCceEcc
Confidence                  12 25799999997753222      2233333478999999874

>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional

Probab=99.13  E-value=7.5e-10  Score=93.46  Aligned_cols=107  Identities=13%  Similarity=0.222  Sum_probs=75.6

Q ss_pred             cccCCCCchhHHHHHHHHHhh-ccCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceE
Q 026513           47 LAFGSGEHATTKLCLLLLRRL-IKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKL  125 (237)
Q Consensus        47 ~~f~~g~~~~~~~~~~~l~~~-~~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v  125 (237)
                      ..+|.........+...+... +.++.+|||+|||+|.++..+++. ..+++++|+++.+++.+++++..  ..    ++
T Consensus         5 k~~GQnfl~d~~~~~~iv~~~~~~~~~~VLEIG~G~G~lt~~L~~~-~~~v~~vEid~~~~~~l~~~~~~--~~----~v   77 (258)
T PRK14896          5 KKLGQHFLIDDRVVDRIVEYAEDTDGDPVLEIGPGKGALTDELAKR-AKKVYAIELDPRLAEFLRDDEIA--AG----NV   77 (258)
T ss_pred             CcCCccccCCHHHHHHHHHhcCCCCcCeEEEEeCccCHHHHHHHHh-CCEEEEEECCHHHHHHHHHHhcc--CC----CE
Confidence            344544443344444444332 457889999999999999999988 46799999999999999988754  22    38


Q ss_pred             EeccCccccccccccccccccccccccccCCCCCCceeEEEEeCChHHHHHHHHHHh
Q 026513          126 HLVPDRTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIV  182 (237)
Q Consensus       126 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~  182 (237)
                      .++++|+.+.                     . -..||.|++|+|++....++..+.
T Consensus        78 ~ii~~D~~~~---------------------~-~~~~d~Vv~NlPy~i~s~~~~~l~  112 (258)
T PRK14896         78 EIIEGDALKV---------------------D-LPEFNKVVSNLPYQISSPITFKLL  112 (258)
T ss_pred             EEEEeccccC---------------------C-chhceEEEEcCCcccCcHHHHHHH
Confidence            8889998631                     1 135899999999875444444433

>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed

Probab=99.11  E-value=1e-09  Score=93.32  Aligned_cols=89  Identities=19%  Similarity=0.215  Sum_probs=69.1

Q ss_pred             ccCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccc
Q 026513           68 IKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVED  147 (237)
Q Consensus        68 ~~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  147 (237)
                      +.++.+|||+|||+|.++..+++.+. +|+|+|+|+.+++.+++++..   .    +++++++|+.+...+         
T Consensus        40 ~~~~~~VLEiG~G~G~lt~~L~~~~~-~v~avE~d~~~~~~~~~~~~~---~----~v~~i~~D~~~~~~~---------  102 (272)
T PRK00274         40 PQPGDNVLEIGPGLGALTEPLLERAA-KVTAVEIDRDLAPILAETFAE---D----NLTIIEGDALKVDLS---------  102 (272)
T ss_pred             CCCcCeEEEeCCCccHHHHHHHHhCC-cEEEEECCHHHHHHHHHhhcc---C----ceEEEEChhhcCCHH---------
Confidence            45778999999999999999998854 899999999999999887642   2    388899998642111         


Q ss_pred             cccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHh
Q 026513          148 LSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSY  184 (237)
Q Consensus       148 ~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~  184 (237)
                                 +-.+|.|++|+|+.....++.++...
T Consensus       103 -----------~~~~~~vv~NlPY~iss~ii~~~l~~  128 (272)
T PRK00274        103 -----------ELQPLKVVANLPYNITTPLLFHLLEE  128 (272)
T ss_pred             -----------HcCcceEEEeCCccchHHHHHHHHhc
Confidence                       11169999999988777776666643

>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]

Probab=99.09  E-value=3.9e-10  Score=95.50  Aligned_cols=126  Identities=19%  Similarity=0.171  Sum_probs=95.5

Q ss_pred             ccCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCC--CcceEEeccCccccccccccccccc
Q 026513           68 IKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGP--KKMKLHLVPDRTFTASMNERVDGVV  145 (237)
Q Consensus        68 ~~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~--~~~~v~~~~~d~~~~~~~~~~~~~~  145 (237)
                      .+++..++|+|||-|+-.+..-+.|...++|+||.+..++.|++..+...-..  -.+.+.|+.+|.+...+.+      
T Consensus       115 ~~~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d------  188 (389)
T KOG1975|consen  115 TKRGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMD------  188 (389)
T ss_pred             hccccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHH------
Confidence            35788999999999999988888889999999999999999999876432211  1124788999987543332      


Q ss_pred             cccccccccCC-CCCCceeEEEEeCChHH-------HHHHHHHHhHhcCCCeEEEEeccCCCCHHHHHHHHhhc
Q 026513          146 EDLSSHKIRGI-SQTEKYDVVIANILLNP-------LLQLADHIVSYAKPGAVVGISGILSEQLPHIINRYSEF  211 (237)
Q Consensus       146 ~~~~~~~~~~~-~~~~~fD~I~~n~~~~~-------~~~~l~~~~~~L~~gG~liis~~~~~~~~~~~~~~~~~  211 (237)
                               .+ .++.+||+|-|...+|.       .+-++.++...|+|||++|-.   .+++..+...++..
T Consensus       189 ---------~~e~~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgT---iPdsd~Ii~rlr~~  250 (389)
T KOG1975|consen  189 ---------LLEFKDPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGT---IPDSDVIIKRLRAG  250 (389)
T ss_pred             ---------hccCCCCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEe---cCcHHHHHHHHHhc
Confidence                     22 12445999999776543       345789999999999999875   66778888888764

>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed

Probab=99.09  E-value=2.1e-09  Score=97.53  Aligned_cols=106  Identities=14%  Similarity=0.142  Sum_probs=84.8

Q ss_pred             ccCCCeEEEEcCcchHHHHHHHHh--CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccc
Q 026513           68 IKGGELFLDYGTGSGILGIAAIKF--GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVV  145 (237)
Q Consensus        68 ~~~~~~vLDlG~G~G~~~~~la~~--~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  145 (237)
                      .++|.+|||+++|+|+-+..++..  +...+++.|+++.-++..++|+...|+.+    +.+...|....          
T Consensus       111 ~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~n----v~v~~~D~~~~----------  176 (470)
T PRK11933        111 DNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSN----VALTHFDGRVF----------  176 (470)
T ss_pred             CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCe----EEEEeCchhhh----------
Confidence            468999999999999999988864  34689999999999999999999999886    77777776421          


Q ss_pred             cccccccccCCCCCCceeEEEEeCCh-------------------------HHHHHHHHHHhHhcCCCeEEEEecc
Q 026513          146 EDLSSHKIRGISQTEKYDVVIANILL-------------------------NPLLQLADHIVSYAKPGAVVGISGI  196 (237)
Q Consensus       146 ~~~~~~~~~~~~~~~~fD~I~~n~~~-------------------------~~~~~~l~~~~~~L~~gG~liis~~  196 (237)
                              ... ....||.|++++|.                         ....+++..+.++|+|||+|+.|+.
T Consensus       177 --------~~~-~~~~fD~ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTC  243 (470)
T PRK11933        177 --------GAA-LPETFDAILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTC  243 (470)
T ss_pred             --------hhh-chhhcCeEEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECC
Confidence                    011 13579999999982                         1225789999999999999999843

>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]

Probab=99.09  E-value=2.4e-09  Score=93.57  Aligned_cols=103  Identities=26%  Similarity=0.317  Sum_probs=84.2

Q ss_pred             cCCCeEEEEcCcchHHHHHHHHhCC---------------------------------C-------eEEEEeCCHHHHHH
Q 026513           69 KGGELFLDYGTGSGILGIAAIKFGA---------------------------------A-------MSVGADIDPQAIKS  108 (237)
Q Consensus        69 ~~~~~vLDlG~G~G~~~~~la~~~~---------------------------------~-------~v~~vD~s~~~i~~  108 (237)
                      +++..++|.-||+|++.+.+|..+.                                 .       .++|+|+++.+++.
T Consensus       190 ~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~i~~  269 (381)
T COG0116         190 KPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPRHIEG  269 (381)
T ss_pred             CCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHHHHHH
Confidence            4567999999999999999886542                                 1       37799999999999


Q ss_pred             HHHHHHHcCCCCCcceEEeccCccccccccccccccccccccccccCCCCC-CceeEEEEeCCh-----------HHHHH
Q 026513          109 AHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDLSSHKIRGISQT-EKYDVVIANILL-----------NPLLQ  176 (237)
Q Consensus       109 a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~fD~I~~n~~~-----------~~~~~  176 (237)
                      |+.|++..|+..   .++|.++|+..                     +... +.+|+||||||+           ..+..
T Consensus       270 Ak~NA~~AGv~d---~I~f~~~d~~~---------------------l~~~~~~~gvvI~NPPYGeRlg~~~~v~~LY~~  325 (381)
T COG0116         270 AKANARAAGVGD---LIEFKQADATD---------------------LKEPLEEYGVVISNPPYGERLGSEALVAKLYRE  325 (381)
T ss_pred             HHHHHHhcCCCc---eEEEEEcchhh---------------------CCCCCCcCCEEEeCCCcchhcCChhhHHHHHHH
Confidence            999999999987   68999999863                     2222 689999999995           24566


Q ss_pred             HHHHHhHhcCCCeEEEEec
Q 026513          177 LADHIVSYAKPGAVVGISG  195 (237)
Q Consensus       177 ~l~~~~~~L~~gG~liis~  195 (237)
                      +.+.+++.++..+..++++
T Consensus       326 fg~~lk~~~~~ws~~v~tt  344 (381)
T COG0116         326 FGRTLKRLLAGWSRYVFTT  344 (381)
T ss_pred             HHHHHHHHhcCCceEEEEc
Confidence            7788888888888888863

>PTZ00338 dimethyladenosine transferase-like protein; Provisional

Probab=99.09  E-value=1.1e-09  Score=93.97  Aligned_cols=112  Identities=18%  Similarity=0.283  Sum_probs=79.6

Q ss_pred             cccccCCCCchhHHHHHHHHHh-hccCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcc
Q 026513           45 PGLAFGSGEHATTKLCLLLLRR-LIKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKM  123 (237)
Q Consensus        45 ~~~~f~~g~~~~~~~~~~~l~~-~~~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~  123 (237)
                      |.-.+|...-.....+...+.. .+.++.+|||+|||+|.++..++.. ..+++++|+|+.+++.+++++...+...   
T Consensus        10 ~kk~~GQnFL~d~~i~~~Iv~~~~~~~~~~VLEIG~G~G~LT~~Ll~~-~~~V~avEiD~~li~~l~~~~~~~~~~~---   85 (294)
T PTZ00338         10 FNKKFGQHILKNPLVLDKIVEKAAIKPTDTVLEIGPGTGNLTEKLLQL-AKKVIAIEIDPRMVAELKKRFQNSPLAS---   85 (294)
T ss_pred             cCCCCCccccCCHHHHHHHHHhcCCCCcCEEEEecCchHHHHHHHHHh-CCcEEEEECCHHHHHHHHHHHHhcCCCC---
Confidence            3444554443333444444433 2467889999999999999999887 4579999999999999999988765322   


Q ss_pred             eEEeccCccccccccccccccccccccccccCCCCCCceeEEEEeCChHHHHHHHHHHh
Q 026513          124 KLHLVPDRTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIV  182 (237)
Q Consensus       124 ~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~  182 (237)
                      +++++++|+.+.                      ...+||+|++|+|+.....++-++.
T Consensus        86 ~v~ii~~Dal~~----------------------~~~~~d~VvaNlPY~Istpil~~ll  122 (294)
T PTZ00338         86 KLEVIEGDALKT----------------------EFPYFDVCVANVPYQISSPLVFKLL  122 (294)
T ss_pred             cEEEEECCHhhh----------------------cccccCEEEecCCcccCcHHHHHHH
Confidence            488999998631                      1246899999999876665544444

>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=99.06  E-value=1.9e-10  Score=86.83  Aligned_cols=89  Identities=22%  Similarity=0.273  Sum_probs=70.8

Q ss_pred             HHHHHHHhhc--cCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccc
Q 026513           59 LCLLLLRRLI--KGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTAS  136 (237)
Q Consensus        59 ~~~~~l~~~~--~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~  136 (237)
                      -++..+.+..  -.|+.++|+|||+|-+....+..+...|+|+|++|++++.+.+|+....+.     +.++++|..+  
T Consensus        35 sM~~~Ih~TygdiEgkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEvq-----idlLqcdild--  107 (185)
T KOG3420|consen   35 SMLYTIHNTYGDIEGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFTRNAEEFEVQ-----IDLLQCDILD--  107 (185)
T ss_pred             HHHHHHHhhhccccCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHhhchHHhhhh-----hheeeeeccc--
Confidence            3444444322  358999999999999998888888999999999999999999999877665     6778888763  


Q ss_pred             ccccccccccccccccccCCCCCCceeEEEEeCChH
Q 026513          137 MNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLN  172 (237)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~~  172 (237)
                                        .....+.||.++.|||+.
T Consensus       108 ------------------le~~~g~fDtaviNppFG  125 (185)
T KOG3420|consen  108 ------------------LELKGGIFDTAVINPPFG  125 (185)
T ss_pred             ------------------hhccCCeEeeEEecCCCC
Confidence                              223358999999999973

>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]

Probab=99.06  E-value=1.3e-09  Score=92.90  Aligned_cols=99  Identities=27%  Similarity=0.352  Sum_probs=80.1

Q ss_pred             CCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccccc
Q 026513           70 GGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDLS  149 (237)
Q Consensus        70 ~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~  149 (237)
                      .++.|||+|||+|+++..+++.|+++|+++|.|. |.+.|++.+..|++..   ++.++.|-+.+               
T Consensus       177 ~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS~-MAqyA~~Lv~~N~~~~---rItVI~GKiEd---------------  237 (517)
T KOG1500|consen  177 QDKIVLDVGAGSGILSFFAAQAGAKKVYAVEASE-MAQYARKLVASNNLAD---RITVIPGKIED---------------  237 (517)
T ss_pred             CCcEEEEecCCccHHHHHHHHhCcceEEEEehhH-HHHHHHHHHhcCCccc---eEEEccCcccc---------------
Confidence            4789999999999999999999999999999998 8899999999988876   78888887653               


Q ss_pred             cccccCCCCCCceeEEEEeCChHHH-----HHHHHHHhHhcCCCeEEEE
Q 026513          150 SHKIRGISQTEKYDVVIANILLNPL-----LQLADHIVSYAKPGAVVGI  193 (237)
Q Consensus       150 ~~~~~~~~~~~~fD~I~~n~~~~~~-----~~~l~~~~~~L~~gG~lii  193 (237)
                            ....++.|+||+.|.-..+     .+-.-.+++.|+|.|.++-
T Consensus       238 ------ieLPEk~DviISEPMG~mL~NERMLEsYl~Ark~l~P~GkMfP  280 (517)
T KOG1500|consen  238 ------IELPEKVDVIISEPMGYMLVNERMLESYLHARKWLKPNGKMFP  280 (517)
T ss_pred             ------ccCchhccEEEeccchhhhhhHHHHHHHHHHHhhcCCCCcccC
Confidence                  3335799999998863222     2222335689999999874

>TIGR00755 ksgA dimethyladenosine transferase

Probab=99.04  E-value=4.2e-09  Score=88.64  Aligned_cols=110  Identities=16%  Similarity=0.272  Sum_probs=78.0

Q ss_pred             cccccCCCCchhHHHHHHHHHhh-ccCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcc
Q 026513           45 PGLAFGSGEHATTKLCLLLLRRL-IKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKM  123 (237)
Q Consensus        45 ~~~~f~~g~~~~~~~~~~~l~~~-~~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~  123 (237)
                      |...+|...-.....+...+... ..++.+|||+|||+|.++..+++.+ .+++++|+++.+++.+++++..  ..    
T Consensus         3 ~~k~~gq~fl~d~~i~~~i~~~~~~~~~~~VLEiG~G~G~lt~~L~~~~-~~v~~iE~d~~~~~~l~~~~~~--~~----   75 (253)
T TIGR00755         3 PRKSLGQNFLIDESVIQKIVEAANVLEGDVVLEIGPGLGALTEPLLKRA-KKVTAIEIDPRLAEILRKLLSL--YE----   75 (253)
T ss_pred             CCCCCCCccCCCHHHHHHHHHhcCCCCcCEEEEeCCCCCHHHHHHHHhC-CcEEEEECCHHHHHHHHHHhCc--CC----
Confidence            33445544443344444444432 3567899999999999999999885 4699999999999999987643  22    


Q ss_pred             eEEeccCccccccccccccccccccccccccCCCCCCcee---EEEEeCChHHHHHHHHHHhH
Q 026513          124 KLHLVPDRTFTASMNERVDGVVEDLSSHKIRGISQTEKYD---VVIANILLNPLLQLADHIVS  183 (237)
Q Consensus       124 ~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD---~I~~n~~~~~~~~~l~~~~~  183 (237)
                      ++.++.+|+.+..                      -..+|   +|++|+|++....++..+..
T Consensus        76 ~v~v~~~D~~~~~----------------------~~~~d~~~~vvsNlPy~i~~~il~~ll~  116 (253)
T TIGR00755        76 RLEVIEGDALKVD----------------------LPDFPKQLKVVSNLPYNISSPLIFKLLE  116 (253)
T ss_pred             cEEEEECchhcCC----------------------hhHcCCcceEEEcCChhhHHHHHHHHhc
Confidence            3778889876321                      11455   99999999887777776665

Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase

>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=99.03  E-value=1.8e-09  Score=86.46  Aligned_cols=116  Identities=22%  Similarity=0.334  Sum_probs=87.9

Q ss_pred             chhHHHHHHHHHhhccCCCeEEEEcCcchHHHHHHHHh-CC--CeEEEEeCCHHHHHHHHHHHHHcC--------CCCCc
Q 026513           54 HATTKLCLLLLRRLIKGGELFLDYGTGSGILGIAAIKF-GA--AMSVGADIDPQAIKSAHQNAALNN--------IGPKK  122 (237)
Q Consensus        54 ~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~la~~-~~--~~v~~vD~s~~~i~~a~~~~~~~~--------~~~~~  122 (237)
                      ......+++.|...+.||...||+|+|+|+++..+++. +.  ...+|||.-++.++.+++|+...-        +..+ 
T Consensus        66 p~mha~~le~L~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~-  144 (237)
T KOG1661|consen   66 PHMHATALEYLDDHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRG-  144 (237)
T ss_pred             hHHHHHHHHHHHHhhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccC-
Confidence            45567777888777899999999999999999988853 33  334899999999999999987543        1112 


Q ss_pred             ceEEeccCccccccccccccccccccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEe
Q 026513          123 MKLHLVPDRTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGIS  194 (237)
Q Consensus       123 ~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis  194 (237)
                       ++.++.+|...                    -.....+||.|.+...   ..++.+++...|++||.+++-
T Consensus       145 -~l~ivvGDgr~--------------------g~~e~a~YDaIhvGAa---a~~~pq~l~dqL~~gGrllip  192 (237)
T KOG1661|consen  145 -ELSIVVGDGRK--------------------GYAEQAPYDAIHVGAA---ASELPQELLDQLKPGGRLLIP  192 (237)
T ss_pred             -ceEEEeCCccc--------------------cCCccCCcceEEEccC---ccccHHHHHHhhccCCeEEEe
Confidence             35677888763                    2233579999999863   334557788899999999984

>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []

Probab=99.03  E-value=2.1e-09  Score=97.14  Aligned_cols=99  Identities=21%  Similarity=0.358  Sum_probs=74.8

Q ss_pred             CCeEEEEcCcchHHHHHHHHhC-----CCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccc
Q 026513           71 GELFLDYGTGSGILGIAAIKFG-----AAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVV  145 (237)
Q Consensus        71 ~~~vLDlG~G~G~~~~~la~~~-----~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  145 (237)
                      +..|+|+|||+|.++..+++.+     ..+|+++|-++.++...++.+..++..+   +|+++.+|+.            
T Consensus       187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~---~V~vi~~d~r------------  251 (448)
T PF05185_consen  187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGD---KVTVIHGDMR------------  251 (448)
T ss_dssp             T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTT---TEEEEES-TT------------
T ss_pred             ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCC---eEEEEeCccc------------
Confidence            5789999999999988776543     5789999999999988888878888866   5999999986            


Q ss_pred             cccccccccCCCCCCceeEEEEeCC-----hHHHHHHHHHHhHhcCCCeEEEE
Q 026513          146 EDLSSHKIRGISQTEKYDVVIANIL-----LNPLLQLADHIVSYAKPGAVVGI  193 (237)
Q Consensus       146 ~~~~~~~~~~~~~~~~fD~I~~n~~-----~~~~~~~l~~~~~~L~~gG~lii  193 (237)
                               .+....++|+||+-..     .+.+.+.+....+.|+|||.++=
T Consensus       252 ---------~v~lpekvDIIVSElLGsfg~nEl~pE~Lda~~rfLkp~Gi~IP  295 (448)
T PF05185_consen  252 ---------EVELPEKVDIIVSELLGSFGDNELSPECLDAADRFLKPDGIMIP  295 (448)
T ss_dssp             ---------TSCHSS-EEEEEE---BTTBTTTSHHHHHHHGGGGEEEEEEEES
T ss_pred             ---------CCCCCCceeEEEEeccCCccccccCHHHHHHHHhhcCCCCEEeC
Confidence                     3444569999999554     23455778888899999998863

These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....

>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]

Probab=99.02  E-value=2.7e-09  Score=88.04  Aligned_cols=104  Identities=15%  Similarity=0.156  Sum_probs=86.5

Q ss_pred             CeEEEEcCcchHHHHHHHH-hCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccccccc
Q 026513           72 ELFLDYGTGSGILGIAAIK-FGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDLSS  150 (237)
Q Consensus        72 ~~vLDlG~G~G~~~~~la~-~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~  150 (237)
                      ..+||||||.|.+.+.+|+ .+...++|+|+....+..|.+.+...++.|    +.+++.|+..                
T Consensus        50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~N----lri~~~DA~~----------------  109 (227)
T COG0220          50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLKN----LRLLCGDAVE----------------  109 (227)
T ss_pred             cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCCc----EEEEcCCHHH----------------
Confidence            4799999999999999886 478889999999999999999999999975    8899999863                


Q ss_pred             ccccCCCCCCceeEEEEeCC------hHH-----HHHHHHHHhHhcCCCeEEEEecc
Q 026513          151 HKIRGISQTEKYDVVIANIL------LNP-----LLQLADHIVSYAKPGAVVGISGI  196 (237)
Q Consensus       151 ~~~~~~~~~~~fD~I~~n~~------~~~-----~~~~l~~~~~~L~~gG~liis~~  196 (237)
                       .+..+.++++.|-|+.+.|      .|+     ...+++.+.+.|+|||.|.+.+-
T Consensus       110 -~l~~~~~~~sl~~I~i~FPDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD  165 (227)
T COG0220         110 -VLDYLIPDGSLDKIYINFPDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATD  165 (227)
T ss_pred             -HHHhcCCCCCeeEEEEECCCCCCCccccccccCCHHHHHHHHHHccCCCEEEEEec
Confidence             2234455669999999887      232     24679999999999999999643

>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]

Probab=99.01  E-value=2.3e-09  Score=90.41  Aligned_cols=124  Identities=12%  Similarity=0.154  Sum_probs=90.8

Q ss_pred             CCeEEEEcCcch----HHHHHHHHhC------CCeEEEEeCCHHHHHHHHHHHHH-----cCCCCCcceEEeccCccccc
Q 026513           71 GELFLDYGTGSG----ILGIAAIKFG------AAMSVGADIDPQAIKSAHQNAAL-----NNIGPKKMKLHLVPDRTFTA  135 (237)
Q Consensus        71 ~~~vLDlG~G~G----~~~~~la~~~------~~~v~~vD~s~~~i~~a~~~~~~-----~~~~~~~~~v~~~~~d~~~~  135 (237)
                      .-+|+.+||++|    ++++.+.+..      .-+|+|+|+|..+++.|+.....     .+++....+-.|..+....-
T Consensus        97 ~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~y  176 (268)
T COG1352          97 PIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGSY  176 (268)
T ss_pred             ceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCcE
Confidence            568999999999    3444444432      35799999999999999986543     45554333334444432234


Q ss_pred             cccccccccccccccccccCCCCCCceeEEEEeCCh-----HHHHHHHHHHhHhcCCCeEEEEe
Q 026513          136 SMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILL-----NPLLQLADHIVSYAKPGAVVGIS  194 (237)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~-----~~~~~~l~~~~~~L~~gG~liis  194 (237)
                      .+.+.++++|.=.+++++......+.||+|+|--++     ....+++..++..|+|||+|++.
T Consensus       177 ~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~LflG  240 (268)
T COG1352         177 RVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFLG  240 (268)
T ss_pred             EEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEEEc
Confidence            566778888888888888877556789999995543     34467899999999999999996

>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.98  E-value=6.1e-10  Score=90.03  Aligned_cols=125  Identities=13%  Similarity=0.175  Sum_probs=71.6

Q ss_pred             CCCeEEEEcCcchH----HHHHHHHh---C---CCeEEEEeCCHHHHHHHHHHHH----HcCCCCCcceEEeccCccccc
Q 026513           70 GGELFLDYGTGSGI----LGIAAIKF---G---AAMSVGADIDPQAIKSAHQNAA----LNNIGPKKMKLHLVPDRTFTA  135 (237)
Q Consensus        70 ~~~~vLDlG~G~G~----~~~~la~~---~---~~~v~~vD~s~~~i~~a~~~~~----~~~~~~~~~~v~~~~~d~~~~  135 (237)
                      +..+|+..||++|.    +++.+...   .   .-+|+|+|+|+.+++.|++...    ..+++....+-.|...+....
T Consensus        31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~  110 (196)
T PF01739_consen   31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY  110 (196)
T ss_dssp             S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred             CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence            34689999999993    33334341   1   2379999999999999998532    112221111111211111122


Q ss_pred             cccccccccccccccccccCCCCCCceeEEEEeCChH-----HHHHHHHHHhHhcCCCeEEEEe
Q 026513          136 SMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLN-----PLLQLADHIVSYAKPGAVVGIS  194 (237)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~~-----~~~~~l~~~~~~L~~gG~liis  194 (237)
                      .+.+.+++.|.-.+.+++......++||+|+|--++-     ...++++.+...|+|||+|+++
T Consensus       111 ~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG  174 (196)
T PF01739_consen  111 RVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLG  174 (196)
T ss_dssp             TE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-
T ss_pred             eEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEe
Confidence            3566677777777777777445567999999966653     3357899999999999999996

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.

>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes

Probab=98.97  E-value=5.5e-09  Score=83.39  Aligned_cols=121  Identities=17%  Similarity=0.282  Sum_probs=81.3

Q ss_pred             CCCeEEEEcCcchHHHHHHHHhC--CCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccc
Q 026513           70 GGELFLDYGTGSGILGIAAIKFG--AAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVED  147 (237)
Q Consensus        70 ~~~~vLDlG~G~G~~~~~la~~~--~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  147 (237)
                      ++.++||+||++|+++..+.+.+  ..+|+|+|+.+.           .+..+    +.++++|..+....+.+.     
T Consensus        23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~-----------~~~~~----~~~i~~d~~~~~~~~~i~-----   82 (181)
T PF01728_consen   23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM-----------DPLQN----VSFIQGDITNPENIKDIR-----   82 (181)
T ss_dssp             TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST-----------GS-TT----EEBTTGGGEEEEHSHHGG-----
T ss_pred             cccEEEEcCCcccceeeeeeecccccceEEEEecccc-----------ccccc----eeeeecccchhhHHHhhh-----
Confidence            34899999999999999999886  688999999996           22333    778888886532221111     


Q ss_pred             cccccccCCC--CCCceeEEEEeCC-----------hHHH---HHHHHHHhHhcCCCeEEEEeccCCCCHHHHHHHHhhc
Q 026513          148 LSSHKIRGIS--QTEKYDVVIANIL-----------LNPL---LQLADHIVSYAKPGAVVGISGILSEQLPHIINRYSEF  211 (237)
Q Consensus       148 ~~~~~~~~~~--~~~~fD~I~~n~~-----------~~~~---~~~l~~~~~~L~~gG~liis~~~~~~~~~~~~~~~~~  211 (237)
                             ...  ..+++|+|+|+..           ....   ...+..+...|+|||.+++.-+......++...+..+
T Consensus        83 -------~~~~~~~~~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~~~~~~~~~~~l~~~  155 (181)
T PF01728_consen   83 -------KLLPESGEKFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFKGPEIEELIYLLKRC  155 (181)
T ss_dssp             -------GSHGTTTCSESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESSSTTSHHHHHHHHHH
T ss_pred             -------hhccccccCcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEeccCccHHHHHHHHHhC
Confidence                   111  1369999999983           1111   2335566678999999999877655546888888877


Q ss_pred             ccccee
Q 026513          212 LEDILV  217 (237)
Q Consensus       212 ~~~~~~  217 (237)
                      |..+..
T Consensus       156 F~~v~~  161 (181)
T PF01728_consen  156 FSKVKI  161 (181)
T ss_dssp             HHHEEE
T ss_pred             CeEEEE
Confidence            765543

RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....

>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2

Probab=98.96  E-value=9.8e-09  Score=86.05  Aligned_cols=121  Identities=17%  Similarity=0.148  Sum_probs=83.4

Q ss_pred             hhHHHHHHHHHhhccCCCeEEEEcCcchHHHHHHHHhC-CCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccc
Q 026513           55 ATTKLCLLLLRRLIKGGELFLDYGTGSGILGIAAIKFG-AAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTF  133 (237)
Q Consensus        55 ~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~la~~~-~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~  133 (237)
                      ...+.+........+..++||-||-|.|..+..+.+++ ..+++++|+++.+++.|++.+.........-+++++.+|..
T Consensus        61 ~y~e~l~h~~~~~~~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~  140 (246)
T PF01564_consen   61 IYHEMLVHPPLLLHPNPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGR  140 (246)
T ss_dssp             HHHHHHHHHHHHHSSST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHH
T ss_pred             HHHHHHhhhHhhcCCCcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhH
Confidence            33444443333334567899999999999999998774 68899999999999999998765432211124777888876


Q ss_pred             cccccccccccccccccccccCCCCCC-ceeEEEEeCCh------H-HHHHHHHHHhHhcCCCeEEEEe
Q 026513          134 TASMNERVDGVVEDLSSHKIRGISQTE-KYDVVIANILL------N-PLLQLADHIVSYAKPGAVVGIS  194 (237)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~fD~I~~n~~~------~-~~~~~l~~~~~~L~~gG~liis  194 (237)
                      ...         +        ..  .+ +||+|+++..-      . ...++++.+.+.|+|||.+++.
T Consensus       141 ~~l---------~--------~~--~~~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~  190 (246)
T PF01564_consen  141 KFL---------K--------ET--QEEKYDVIIVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQ  190 (246)
T ss_dssp             HHH---------H--------TS--SST-EEEEEEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEE
T ss_pred             HHH---------H--------hc--cCCcccEEEEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEE
Confidence            321         1        11  33 89999997652      1 1257899999999999999985

5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....

>PRK00536 speE spermidine synthase; Provisional

Probab=98.95  E-value=1.4e-08  Score=85.36  Aligned_cols=135  Identities=13%  Similarity=0.042  Sum_probs=92.9

Q ss_pred             cCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHc--CCCCCcceEEeccCcccccccccccccccc
Q 026513           69 KGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALN--NIGPKKMKLHLVPDRTFTASMNERVDGVVE  146 (237)
Q Consensus        69 ~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~--~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  146 (237)
                      +..++||-+|.|.|..+..+.+++. +|+.+|+++.+++.+++.+...  ...+.++++..   ...             
T Consensus        71 ~~pk~VLIiGGGDGg~~REvLkh~~-~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~---~~~-------------  133 (262)
T PRK00536         71 KELKEVLIVDGFDLELAHQLFKYDT-HVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAK---QLL-------------  133 (262)
T ss_pred             CCCCeEEEEcCCchHHHHHHHCcCC-eeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEee---hhh-------------
Confidence            5568999999999999999999864 8999999999999999955432  33444433332   110             


Q ss_pred             ccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEe---ccC-CCCHHHHHHHHhhcccccee-----
Q 026513          147 DLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGIS---GIL-SEQLPHIINRYSEFLEDILV-----  217 (237)
Q Consensus       147 ~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis---~~~-~~~~~~~~~~~~~~~~~~~~-----  217 (237)
                              . ...++||+||++....  ..+.+.+.+.|+|||.++..   .++ .+....+...++..|..+..     
T Consensus       134 --------~-~~~~~fDVIIvDs~~~--~~fy~~~~~~L~~~Gi~v~Qs~sp~~~~~~~~~i~~~l~~~F~~v~~y~~~v  202 (262)
T PRK00536        134 --------D-LDIKKYDLIICLQEPD--IHKIDGLKRMLKEDGVFISVAKHPLLEHVSMQNALKNMGDFFSIAMPFVAPL  202 (262)
T ss_pred             --------h-ccCCcCCEEEEcCCCC--hHHHHHHHHhcCCCcEEEECCCCcccCHHHHHHHHHHHHhhCCceEEEEecC
Confidence                    1 1136899999996433  46778899999999999993   222 22233445555555543332     


Q ss_pred             eecCCEEEEEEEEc
Q 026513          218 SEMDDWTCVSGKKK  231 (237)
Q Consensus       218 ~~~~~w~~~~~~~~  231 (237)
                      ...+.|+.+++++.
T Consensus       203 p~~g~wgf~~aS~~  216 (262)
T PRK00536        203 RILSNKGYIYASFK  216 (262)
T ss_pred             CCcchhhhheecCC
Confidence            33478999888764

>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]

Probab=98.95  E-value=8.3e-09  Score=83.28  Aligned_cols=116  Identities=23%  Similarity=0.200  Sum_probs=79.0

Q ss_pred             hhHHHHHHHHHhhccCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccc
Q 026513           55 ATTKLCLLLLRRLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFT  134 (237)
Q Consensus        55 ~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~  134 (237)
                      +.+..+++.+...-....-|||||||+|.-+..+...| -..+|+|+|+.|++.|.+.-..         -.++.+|+.+
T Consensus        35 em~eRaLELLalp~~~~~~iLDIGCGsGLSg~vL~~~G-h~wiGvDiSpsML~~a~~~e~e---------gdlil~DMG~  104 (270)
T KOG1541|consen   35 EMAERALELLALPGPKSGLILDIGCGSGLSGSVLSDSG-HQWIGVDISPSMLEQAVERELE---------GDLILCDMGE  104 (270)
T ss_pred             HHHHHHHHHhhCCCCCCcEEEEeccCCCcchheeccCC-ceEEeecCCHHHHHHHHHhhhh---------cCeeeeecCC
Confidence            33444444443211125689999999999999888887 5689999999999999873221         1244566543


Q ss_pred             ccccccccccccccccccccCCCCCCceeEEEEeCCh--------------HHHHHHHHHHhHhcCCCeEEEEeccCCC
Q 026513          135 ASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILL--------------NPLLQLADHIVSYAKPGAVVGISGILSE  199 (237)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~--------------~~~~~~l~~~~~~L~~gG~liis~~~~~  199 (237)
                      +                   ..+..+.||-+|+-..+              ..+..++..+...|++|+..++.-+..+
T Consensus       105 G-------------------lpfrpGtFDg~ISISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfYpen  164 (270)
T KOG1541|consen  105 G-------------------LPFRPGTFDGVISISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQFYPEN  164 (270)
T ss_pred             C-------------------CCCCCCccceEEEeeeeeeecccCccccChHHHHHHHhhhhhhhhccCceeEEEecccc
Confidence            2                   23446899999863332              2234678889999999999999755433

>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]

Probab=98.93  E-value=2.3e-09  Score=83.80  Aligned_cols=77  Identities=21%  Similarity=0.309  Sum_probs=55.1

Q ss_pred             eEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccccccccc
Q 026513           73 LFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDLSSHK  152 (237)
Q Consensus        73 ~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~  152 (237)
                      .|+|+.||.|..++.+|+. ..+|+++|+++..++.|+.|++..|+..   +++++++|+.+.                 
T Consensus         2 ~vlD~fcG~GGNtIqFA~~-~~~Viaidid~~~~~~a~hNa~vYGv~~---~I~~i~gD~~~~-----------------   60 (163)
T PF09445_consen    2 TVLDAFCGVGGNTIQFART-FDRVIAIDIDPERLECAKHNAEVYGVAD---NIDFICGDFFEL-----------------   60 (163)
T ss_dssp             EEEETT-TTSHHHHHHHHT-T-EEEEEES-HHHHHHHHHHHHHTT-GG---GEEEEES-HHHH-----------------
T ss_pred             EEEEeccCcCHHHHHHHHh-CCeEEEEECCHHHHHHHHHHHHHcCCCC---cEEEEeCCHHHH-----------------
Confidence            6999999999999999998 6779999999999999999999999865   599999999841                 


Q ss_pred             ccCCCCCCceeEEEEeCC
Q 026513          153 IRGISQTEKYDVVIANIL  170 (237)
Q Consensus       153 ~~~~~~~~~fD~I~~n~~  170 (237)
                      +........+|+|+++||
T Consensus        61 ~~~~~~~~~~D~vFlSPP   78 (163)
T PF09445_consen   61 LKRLKSNKIFDVVFLSPP   78 (163)
T ss_dssp             GGGB------SEEEE---
T ss_pred             HhhccccccccEEEECCC
Confidence            112221222899999998

Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.

>KOG2361 consensus Predicted methyltransferase [General function prediction only]

Probab=98.92  E-value=3.3e-09  Score=86.61  Aligned_cols=112  Identities=13%  Similarity=0.208  Sum_probs=79.8

Q ss_pred             eEEEEcCcchHHHHHHHHh-CC--CeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccccc
Q 026513           73 LFLDYGTGSGILGIAAIKF-GA--AMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDLS  149 (237)
Q Consensus        73 ~vLDlG~G~G~~~~~la~~-~~--~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~  149 (237)
                      +||++|||.|.....+.+. +.  -.++++|.||.+++..+++...+. +    ++.....|+..+.             
T Consensus        74 ~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e-~----~~~afv~Dlt~~~-------------  135 (264)
T KOG2361|consen   74 TILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDE-S----RVEAFVWDLTSPS-------------  135 (264)
T ss_pred             hheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccch-h----hhcccceeccchh-------------
Confidence            7999999999988887764 23  579999999999999998865543 1    2333444544321             


Q ss_pred             cccccCCCCCCceeEEEEeCC-----hHHHHHHHHHHhHhcCCCeEEEEeccCCCCHHHHH
Q 026513          150 SHKIRGISQTEKYDVVIANIL-----LNPLLQLADHIVSYAKPGAVVGISGILSEQLPHII  205 (237)
Q Consensus       150 ~~~~~~~~~~~~fD~I~~n~~-----~~~~~~~l~~~~~~L~~gG~liis~~~~~~~~~~~  205 (237)
                         .......+++|+|++-.+     -..+...++++.++|||||.|++.++-..+...+.
T Consensus       136 ---~~~~~~~~svD~it~IFvLSAi~pek~~~a~~nl~~llKPGG~llfrDYg~~DlaqlR  193 (264)
T KOG2361|consen  136 ---LKEPPEEGSVDIITLIFVLSAIHPEKMQSVIKNLRTLLKPGGSLLFRDYGRYDLAQLR  193 (264)
T ss_pred             ---ccCCCCcCccceEEEEEEEeccChHHHHHHHHHHHHHhCCCcEEEEeecccchHHHHh
Confidence               112334578898876443     35566789999999999999999877666554443

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=98.91  E-value=7.9e-10  Score=89.61  Aligned_cols=96  Identities=24%  Similarity=0.320  Sum_probs=70.4

Q ss_pred             CCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccccccc
Q 026513           71 GELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDLSS  150 (237)
Q Consensus        71 ~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~  150 (237)
                      =.++||+|||||..+..+... ..+++|+|+|.+|++.|.++--...         ..++|...+.              
T Consensus       126 F~~~lDLGCGTGL~G~~lR~~-a~~ltGvDiS~nMl~kA~eKg~YD~---------L~~Aea~~Fl--------------  181 (287)
T COG4976         126 FRRMLDLGCGTGLTGEALRDM-ADRLTGVDISENMLAKAHEKGLYDT---------LYVAEAVLFL--------------  181 (287)
T ss_pred             cceeeecccCcCcccHhHHHH-HhhccCCchhHHHHHHHHhccchHH---------HHHHHHHHHh--------------
Confidence            368999999999999998776 5679999999999999886522111         1122221100              


Q ss_pred             ccccCCCCCCceeEEEEeCChHHH---HHHHHHHhHhcCCCeEEEEe
Q 026513          151 HKIRGISQTEKYDVVIANILLNPL---LQLADHIVSYAKPGAVVGIS  194 (237)
Q Consensus       151 ~~~~~~~~~~~fD~I~~n~~~~~~---~~~l~~~~~~L~~gG~liis  194 (237)
                          .....++||+|++.-++..+   ..++.-+..+|+|||.+.+|
T Consensus       182 ----~~~~~er~DLi~AaDVl~YlG~Le~~~~~aa~~L~~gGlfaFS  224 (287)
T COG4976         182 ----EDLTQERFDLIVAADVLPYLGALEGLFAGAAGLLAPGGLFAFS  224 (287)
T ss_pred             ----hhccCCcccchhhhhHHHhhcchhhHHHHHHHhcCCCceEEEE
Confidence                11125789999998876655   45688899999999999997

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=98.91  E-value=1.7e-08  Score=96.38  Aligned_cols=105  Identities=24%  Similarity=0.256  Sum_probs=75.0

Q ss_pred             cCCCeEEEEcCcchHHHHHHHHh-------------C------------------------------CCeEEEEeCCHHH
Q 026513           69 KGGELFLDYGTGSGILGIAAIKF-------------G------------------------------AAMSVGADIDPQA  105 (237)
Q Consensus        69 ~~~~~vLDlG~G~G~~~~~la~~-------------~------------------------------~~~v~~vD~s~~~  105 (237)
                      .++..++|.+||+|++.+.++..             +                              ..+++|+|+++.+
T Consensus       189 ~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i~G~Did~~a  268 (702)
T PRK11783        189 QEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKFYGSDIDPRV  268 (702)
T ss_pred             CCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceEEEEECCHHH
Confidence            56789999999999999887642             0                              1258999999999


Q ss_pred             HHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccccccccccCCCCCCceeEEEEeCChH-------HHHHHH
Q 026513          106 IKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLN-------PLLQLA  178 (237)
Q Consensus       106 i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~~-------~~~~~l  178 (237)
                      ++.|++|+..+|+..   .+.+.++|+.+..                  .....++||+|++|||+.       ....+.
T Consensus       269 v~~A~~N~~~~g~~~---~i~~~~~D~~~~~------------------~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY  327 (702)
T PRK11783        269 IQAARKNARRAGVAE---LITFEVKDVADLK------------------NPLPKGPTGLVISNPPYGERLGEEPALIALY  327 (702)
T ss_pred             HHHHHHHHHHcCCCc---ceEEEeCChhhcc------------------cccccCCCCEEEECCCCcCccCchHHHHHHH
Confidence            999999999999875   4788899987421                  111235799999999962       122233


Q ss_pred             HHHhHhc---CCCeEEEEe
Q 026513          179 DHIVSYA---KPGAVVGIS  194 (237)
Q Consensus       179 ~~~~~~L---~~gG~liis  194 (237)
                      ..+...+   .+|+.+++-
T Consensus       328 ~~lg~~lk~~~~g~~~~ll  346 (702)
T PRK11783        328 SQLGRRLKQQFGGWNAALF  346 (702)
T ss_pred             HHHHHHHHHhCCCCeEEEE
Confidence            3333333   388877663

>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]

Probab=98.90  E-value=7.6e-08  Score=84.82  Aligned_cols=122  Identities=19%  Similarity=0.224  Sum_probs=89.5

Q ss_pred             ccCCCeEEEEcCcchHHHHHHHHhC---CCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccc
Q 026513           68 IKGGELFLDYGTGSGILGIAAIKFG---AAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGV  144 (237)
Q Consensus        68 ~~~~~~vLDlG~G~G~~~~~la~~~---~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~  144 (237)
                      ..+|.+|||++++.|.-+..+++..   ...|+++|+++.-++..++|++..|+.+    +.++..|.....        
T Consensus       154 p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~n----v~~~~~d~~~~~--------  221 (355)
T COG0144         154 PKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRN----VIVVNKDARRLA--------  221 (355)
T ss_pred             CCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCc----eEEEeccccccc--------
Confidence            5789999999999999998888753   2456999999999999999999999987    666676654210        


Q ss_pred             ccccccccccCCCCCCceeEEEEeCCh-------------------------HHHHHHHHHHhHhcCCCeEEEEe-ccC-
Q 026513          145 VEDLSSHKIRGISQTEKYDVVIANILL-------------------------NPLLQLADHIVSYAKPGAVVGIS-GIL-  197 (237)
Q Consensus       145 ~~~~~~~~~~~~~~~~~fD~I~~n~~~-------------------------~~~~~~l~~~~~~L~~gG~liis-~~~-  197 (237)
                               .......+||.|++++|.                         ....+++..+.++|||||.|+.| |.+ 
T Consensus       222 ---------~~~~~~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~~  292 (355)
T COG0144         222 ---------ELLPGGEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSLT  292 (355)
T ss_pred             ---------ccccccCcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCCc
Confidence                     011122369999999982                         22357899999999999999998 433 


Q ss_pred             CCCHHHHH-HHHhh
Q 026513          198 SEQLPHII-NRYSE  210 (237)
Q Consensus       198 ~~~~~~~~-~~~~~  210 (237)
                      .++-++.. ..+..
T Consensus       293 ~eENE~vV~~~L~~  306 (355)
T COG0144         293 PEENEEVVERFLER  306 (355)
T ss_pred             hhcCHHHHHHHHHh
Confidence            33333444 44444

>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=98.90  E-value=2.6e-08  Score=80.30  Aligned_cols=124  Identities=19%  Similarity=0.239  Sum_probs=93.3

Q ss_pred             hccCCCeEEEEcCcchHHHHHHHHh-C-CCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccc
Q 026513           67 LIKGGELFLDYGTGSGILGIAAIKF-G-AAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGV  144 (237)
Q Consensus        67 ~~~~~~~vLDlG~G~G~~~~~la~~-~-~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~  144 (237)
                      .+.+|.+|+|||+-+|..+..+++. + ...|+|+|+.|..           ...+    +.++++|+++....+     
T Consensus        42 i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~-----------~~~~----V~~iq~d~~~~~~~~-----  101 (205)
T COG0293          42 LFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMK-----------PIPG----VIFLQGDITDEDTLE-----  101 (205)
T ss_pred             eecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccc-----------cCCC----ceEEeeeccCccHHH-----
Confidence            3678999999999999999999875 2 2349999999832           2333    889999988644332     


Q ss_pred             ccccccccccCCCCCCceeEEEEeCCh--------HHHH------HHHHHHhHhcCCCeEEEEeccCCCCHHHHHHHHhh
Q 026513          145 VEDLSSHKIRGISQTEKYDVVIANILL--------NPLL------QLADHIVSYAKPGAVVGISGILSEQLPHIINRYSE  210 (237)
Q Consensus       145 ~~~~~~~~~~~~~~~~~fD~I~~n~~~--------~~~~------~~l~~~~~~L~~gG~liis~~~~~~~~~~~~~~~~  210 (237)
                             .+.......++|+|++++..        ++..      ..+..+...|+|||.+++..+......+++..++.
T Consensus       102 -------~l~~~l~~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fqg~~~~~~l~~~~~  174 (205)
T COG0293         102 -------KLLEALGGAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQGEDFEDLLKALRR  174 (205)
T ss_pred             -------HHHHHcCCCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEeCCCHHHHHHHHHH
Confidence                   11222334568999998753        3332      33566778999999999999999999999999998


Q ss_pred             cccccee
Q 026513          211 FLEDILV  217 (237)
Q Consensus       211 ~~~~~~~  217 (237)
                      +|..+..
T Consensus       175 ~F~~v~~  181 (205)
T COG0293         175 LFRKVKI  181 (205)
T ss_pred             hhceeEE
Confidence            8877765

>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.89  E-value=2.8e-08  Score=80.78  Aligned_cols=109  Identities=14%  Similarity=0.241  Sum_probs=88.3

Q ss_pred             CCCeEEEEcCcchHHHHHHHHh--CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccc
Q 026513           70 GGELFLDYGTGSGILGIAAIKF--GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVED  147 (237)
Q Consensus        70 ~~~~vLDlG~G~G~~~~~la~~--~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  147 (237)
                      ..+++||+|.=+|+-++..|..  ...+|+++|+++.+.+.+.+..+..++..   ++.++++...+     .+++++..
T Consensus        73 ~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~---KI~~i~g~a~e-----sLd~l~~~  144 (237)
T KOG1663|consen   73 NAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDH---KITFIEGPALE-----SLDELLAD  144 (237)
T ss_pred             CCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccc---eeeeeecchhh-----hHHHHHhc
Confidence            4679999999999888877753  46789999999999999999999999876   68999998763     23333222


Q ss_pred             cccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEec
Q 026513          148 LSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISG  195 (237)
Q Consensus       148 ~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~  195 (237)
                      .         ..+.||++|.+.--..+..+..++.+++++||+|++..
T Consensus       145 ~---------~~~tfDfaFvDadK~nY~~y~e~~l~Llr~GGvi~~DN  183 (237)
T KOG1663|consen  145 G---------ESGTFDFAFVDADKDNYSNYYERLLRLLRVGGVIVVDN  183 (237)
T ss_pred             C---------CCCceeEEEEccchHHHHHHHHHHHhhcccccEEEEec
Confidence            1         35789999999877667788999999999999999954

>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2

Probab=98.86  E-value=1.2e-08  Score=88.27  Aligned_cols=123  Identities=28%  Similarity=0.409  Sum_probs=79.1

Q ss_pred             cCCCeEEEEcCcchHHHHHHHH--------hCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccc
Q 026513           69 KGGELFLDYGTGSGILGIAAIK--------FGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNER  140 (237)
Q Consensus        69 ~~~~~vLDlG~G~G~~~~~la~--------~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~  140 (237)
                      .++.+|+|.+||+|.+...+.+        ....+++|+|+++.++..|+-++...+.....  ..+..+|.+...    
T Consensus        45 ~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~--~~i~~~d~l~~~----  118 (311)
T PF02384_consen   45 KKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSN--INIIQGDSLEND----  118 (311)
T ss_dssp             -TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBG--CEEEES-TTTSH----
T ss_pred             cccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhcccccc--cccccccccccc----
Confidence            4567899999999999888765        25678999999999999999998777655421  235566654211    


Q ss_pred             ccccccccccccccCCCCCCceeEEEEeCChHHH------------------------HHHHHHHhHhcCCCeEEEEe--
Q 026513          141 VDGVVEDLSSHKIRGISQTEKYDVVIANILLNPL------------------------LQLADHIVSYAKPGAVVGIS--  194 (237)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~~~~------------------------~~~l~~~~~~L~~gG~liis--  194 (237)
                                    ......+||+|++|||+...                        ..++..+...|++||++.+.  
T Consensus       119 --------------~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp  184 (311)
T PF02384_consen  119 --------------KFIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILP  184 (311)
T ss_dssp             --------------SCTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             --------------ccccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEec
Confidence                          11124689999999995221                        14678899999999986552  


Q ss_pred             -ccC-CC-CHHHHHHHHhhc
Q 026513          195 -GIL-SE-QLPHIINRYSEF  211 (237)
Q Consensus       195 -~~~-~~-~~~~~~~~~~~~  211 (237)
                       +++ .. ....+.+.+...
T Consensus       185 ~~~L~~~~~~~~iR~~ll~~  204 (311)
T PF02384_consen  185 NGFLFSSSSEKKIRKYLLEN  204 (311)
T ss_dssp             HHHHHGSTHHHHHHHHHHHH
T ss_pred             chhhhccchHHHHHHHHHhh
Confidence             343 22 245666666543

1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.

>PRK10611 chemotaxis methyltransferase CheR; Provisional

Probab=98.85  E-value=1.1e-08  Score=87.22  Aligned_cols=125  Identities=10%  Similarity=0.157  Sum_probs=79.0

Q ss_pred             CCeEEEEcCcchH----HHHHHHHh-C----CCeEEEEeCCHHHHHHHHHHHH----HcCCCCCcceEEeccCcc---cc
Q 026513           71 GELFLDYGTGSGI----LGIAAIKF-G----AAMSVGADIDPQAIKSAHQNAA----LNNIGPKKMKLHLVPDRT---FT  134 (237)
Q Consensus        71 ~~~vLDlG~G~G~----~~~~la~~-~----~~~v~~vD~s~~~i~~a~~~~~----~~~~~~~~~~v~~~~~d~---~~  134 (237)
                      ..+|+..||++|-    +++.+... +    .-+|+|+|+|+.+++.|++...    ..+++....+-.|...+.   ..
T Consensus       116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~  195 (287)
T PRK10611        116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGL  195 (287)
T ss_pred             CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCce
Confidence            3699999999993    33333332 1    2469999999999999998632    112221111111211100   01


Q ss_pred             ccccccccccccccccccccCC-CCCCceeEEEEeCChHH-----HHHHHHHHhHhcCCCeEEEEec
Q 026513          135 ASMNERVDGVVEDLSSHKIRGI-SQTEKYDVVIANILLNP-----LLQLADHIVSYAKPGAVVGISG  195 (237)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~fD~I~~n~~~~~-----~~~~l~~~~~~L~~gG~liis~  195 (237)
                      ..+.+.++++|.-.+.+++... ...++||+|+|..++.+     ..+++..+...|+|||+|+++.
T Consensus       196 ~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG~  262 (287)
T PRK10611        196 VRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAGH  262 (287)
T ss_pred             EEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEeC
Confidence            2244556666666666666532 33578999999555433     4578999999999999999863

>KOG3010 consensus Methyltransferase [General function prediction only]

Probab=98.85  E-value=1.4e-08  Score=83.04  Aligned_cols=101  Identities=13%  Similarity=0.170  Sum_probs=70.4

Q ss_pred             CeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccccccc
Q 026513           72 ELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDLSSH  151 (237)
Q Consensus        72 ~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~  151 (237)
                      ..++|+|||+|.-++.++.+ ..+|+|+|+|+.|++.|++.....   .+.........+..                  
T Consensus        35 ~~a~DvG~G~Gqa~~~iae~-~k~VIatD~s~~mL~~a~k~~~~~---y~~t~~~ms~~~~v------------------   92 (261)
T KOG3010|consen   35 RLAWDVGTGNGQAARGIAEH-YKEVIATDVSEAMLKVAKKHPPVT---YCHTPSTMSSDEMV------------------   92 (261)
T ss_pred             ceEEEeccCCCcchHHHHHh-hhhheeecCCHHHHHHhhcCCCcc---cccCCccccccccc------------------
Confidence            38999999999777777777 788999999999999888653211   11111222222221                  


Q ss_pred             cccCCCCCCceeEEEEeCChHHH--HHHHHHHhHhcCCCe-EEEEecc
Q 026513          152 KIRGISQTEKYDVVIANILLNPL--LQLADHIVSYAKPGA-VVGISGI  196 (237)
Q Consensus       152 ~~~~~~~~~~fD~I~~n~~~~~~--~~~l~~~~~~L~~gG-~liis~~  196 (237)
                        .....+.+.|+|+|.-.+|++  .++.+.+.++||+.| .+.+-++
T Consensus        93 --~L~g~e~SVDlI~~Aqa~HWFdle~fy~~~~rvLRk~Gg~iavW~Y  138 (261)
T KOG3010|consen   93 --DLLGGEESVDLITAAQAVHWFDLERFYKEAYRVLRKDGGLIAVWNY  138 (261)
T ss_pred             --cccCCCcceeeehhhhhHHhhchHHHHHHHHHHcCCCCCEEEEEEc
Confidence              112236799999999888887  478999999998877 5555443

>TIGR00478 tly hemolysin TlyA family protein

Probab=98.83  E-value=7.6e-09  Score=85.50  Aligned_cols=40  Identities=23%  Similarity=0.347  Sum_probs=36.5

Q ss_pred             cCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHH
Q 026513           69 KGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKS  108 (237)
Q Consensus        69 ~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~  108 (237)
                      .++.++||+|||+|.++..+++.|+.+|+|+|+++.++..
T Consensus        74 ~~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~  113 (228)
T TIGR00478        74 VKNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAE  113 (228)
T ss_pred             CCCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHH
Confidence            4688999999999999999999998999999999988765

Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=98.81  E-value=4.1e-08  Score=90.40  Aligned_cols=119  Identities=15%  Similarity=0.083  Sum_probs=89.9

Q ss_pred             CCCeEEEEcCcchHHHHHHHH-hCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccccc
Q 026513           70 GGELFLDYGTGSGILGIAAIK-FGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDL  148 (237)
Q Consensus        70 ~~~~vLDlG~G~G~~~~~la~-~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~  148 (237)
                      .+..+||||||.|.+...+|. .+...++|+|++...+..+.+.+...++.|    +.++..|+..              
T Consensus       347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~N----~~~~~~~~~~--------------  408 (506)
T PRK01544        347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNITN----FLLFPNNLDL--------------  408 (506)
T ss_pred             CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCCCe----EEEEcCCHHH--------------
Confidence            456899999999999998885 577889999999999999888888888887    7777777531              


Q ss_pred             ccccccCCCCCCceeEEEEeCChHH-----------HHHHHHHHhHhcCCCeEEEEeccCCCCHHHHHHHHhh
Q 026513          149 SSHKIRGISQTEKYDVVIANILLNP-----------LLQLADHIVSYAKPGAVVGISGILSEQLPHIINRYSE  210 (237)
Q Consensus       149 ~~~~~~~~~~~~~fD~I~~n~~~~~-----------~~~~l~~~~~~L~~gG~liis~~~~~~~~~~~~~~~~  210 (237)
                          +....++.++|.|+.+.|=.+           ...+++.+.+.|+|||.+.+.+-..+-.......+.+
T Consensus       409 ----~~~~~~~~sv~~i~i~FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~TD~~~y~~~~~~~~~~  477 (506)
T PRK01544        409 ----ILNDLPNNSLDGIYILFPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFASDIENYFYEAIELIQQ  477 (506)
T ss_pred             ----HHHhcCcccccEEEEECCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHh
Confidence                123345678999999887321           2467999999999999999964443334444444444

>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]

Probab=98.81  E-value=6e-08  Score=82.53  Aligned_cols=104  Identities=18%  Similarity=0.214  Sum_probs=79.8

Q ss_pred             CeEEEEcCcchHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccccccc
Q 026513           72 ELFLDYGTGSGILGIAAIKF-GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDLSS  150 (237)
Q Consensus        72 ~~vLDlG~G~G~~~~~la~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~  150 (237)
                      ++||-||-|.|..+..+.++ +..+++.+|+++..++.+++.+.........-++.++.+|..+.         |+    
T Consensus        78 k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~---------v~----  144 (282)
T COG0421          78 KRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEF---------LR----  144 (282)
T ss_pred             CeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHH---------HH----
Confidence            69999999999999999887 47899999999999999999876443211123677888887631         11    


Q ss_pred             ccccCCCCCCceeEEEEeCC--hHH-----HHHHHHHHhHhcCCCeEEEEe
Q 026513          151 HKIRGISQTEKYDVVIANIL--LNP-----LLQLADHIVSYAKPGAVVGIS  194 (237)
Q Consensus       151 ~~~~~~~~~~~fD~I~~n~~--~~~-----~~~~l~~~~~~L~~gG~liis  194 (237)
                          ..  ..+||+|+++..  ..+     ...+++.+.+.|+++|+++..
T Consensus       145 ----~~--~~~fDvIi~D~tdp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q  189 (282)
T COG0421         145 ----DC--EEKFDVIIVDSTDPVGPAEALFTEEFYEGCRRALKEDGIFVAQ  189 (282)
T ss_pred             ----hC--CCcCCEEEEcCCCCCCcccccCCHHHHHHHHHhcCCCcEEEEe
Confidence                12  348999998552  112     257899999999999999996

>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]

Probab=98.76  E-value=1.1e-07  Score=79.52  Aligned_cols=120  Identities=15%  Similarity=0.153  Sum_probs=83.9

Q ss_pred             ccCCCCchhHHHHHHHHHh-hccCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEE
Q 026513           48 AFGSGEHATTKLCLLLLRR-LIKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLH  126 (237)
Q Consensus        48 ~f~~g~~~~~~~~~~~l~~-~~~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~  126 (237)
                      .||...-.....+...+.. .+.++.+|||||+|.|.+|..+++.+ .+|+++|+|+..++..++....  ..    ++.
T Consensus         7 ~~GQnFL~d~~v~~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~~~-~~v~aiEiD~~l~~~L~~~~~~--~~----n~~   79 (259)
T COG0030           7 RLGQNFLIDKNVIDKIVEAANISPGDNVLEIGPGLGALTEPLLERA-ARVTAIEIDRRLAEVLKERFAP--YD----NLT   79 (259)
T ss_pred             CcccccccCHHHHHHHHHhcCCCCCCeEEEECCCCCHHHHHHHhhc-CeEEEEEeCHHHHHHHHHhccc--cc----ceE
Confidence            3444444444555555543 24568899999999999999999984 4599999999999998887652  22    488


Q ss_pred             eccCccccccccccccccccccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCC--CeEEEE
Q 026513          127 LVPDRTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKP--GAVVGI  193 (237)
Q Consensus       127 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~--gG~lii  193 (237)
                      ++++|+.....+                ..   .+++.|++|.|+.....++.++...-.+  ..++.+
T Consensus        80 vi~~DaLk~d~~----------------~l---~~~~~vVaNlPY~Isspii~kll~~~~~~~~~v~M~  129 (259)
T COG0030          80 VINGDALKFDFP----------------SL---AQPYKVVANLPYNISSPILFKLLEEKFIIQDMVLMV  129 (259)
T ss_pred             EEeCchhcCcch----------------hh---cCCCEEEEcCCCcccHHHHHHHHhccCccceEEEEe
Confidence            999998743221                11   1789999999998777776655544333  444444

>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional

Probab=98.76  E-value=1.1e-07  Score=81.48  Aligned_cols=61  Identities=25%  Similarity=0.282  Sum_probs=50.7

Q ss_pred             ccCCCeEEEEcCcchHHHHHHHHhC--CCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccc
Q 026513           68 IKGGELFLDYGTGSGILGIAAIKFG--AAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFT  134 (237)
Q Consensus        68 ~~~~~~vLDlG~G~G~~~~~la~~~--~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~  134 (237)
                      +.+|..++|.+||.|..+..+++..  ..+|+|+|.|+.+++.|++.+..  ..    ++.++++|..+
T Consensus        17 ~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~--~~----ri~~i~~~f~~   79 (296)
T PRK00050         17 IKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP--FG----RFTLVHGNFSN   79 (296)
T ss_pred             CCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc--CC----cEEEEeCCHHH
Confidence            3577899999999999999998763  57899999999999999988754  22    48888888763

>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.75  E-value=4.9e-08  Score=81.43  Aligned_cols=95  Identities=23%  Similarity=0.393  Sum_probs=74.4

Q ss_pred             cCCCeEEEEcCcchHHHHHHHH-hCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccc
Q 026513           69 KGGELFLDYGTGSGILGIAAIK-FGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVED  147 (237)
Q Consensus        69 ~~~~~vLDlG~G~G~~~~~la~-~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  147 (237)
                      .+..+|+|+|+|.|.++..+++ ++..+++..|. |.+++.+++       .+   ++.++.+|+++             
T Consensus        99 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~-------~~---rv~~~~gd~f~-------------  154 (241)
T PF00891_consen   99 SGFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE-------AD---RVEFVPGDFFD-------------  154 (241)
T ss_dssp             TTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH-------TT---TEEEEES-TTT-------------
T ss_pred             cCccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc-------cc---ccccccccHHh-------------
Confidence            4567899999999999999885 58889999999 778888887       22   48899999873             


Q ss_pred             cccccccCCCCCCceeEEEEeCChHHH-----HHHHHHHhHhcCCC--eEEEEeccC
Q 026513          148 LSSHKIRGISQTEKYDVVIANILLNPL-----LQLADHIVSYAKPG--AVVGISGIL  197 (237)
Q Consensus       148 ~~~~~~~~~~~~~~fD~I~~n~~~~~~-----~~~l~~~~~~L~~g--G~liis~~~  197 (237)
                             .+  .. +|+++..-.+|..     ..+++++...|+||  |+|+|.+..
T Consensus       155 -------~~--P~-~D~~~l~~vLh~~~d~~~~~iL~~~~~al~pg~~g~llI~e~~  201 (241)
T PF00891_consen  155 -------PL--PV-ADVYLLRHVLHDWSDEDCVKILRNAAAALKPGKDGRLLIIEMV  201 (241)
T ss_dssp             -------CC--SS-ESEEEEESSGGGS-HHHHHHHHHHHHHHSEECTTEEEEEEEEE
T ss_pred             -------hh--cc-ccceeeehhhhhcchHHHHHHHHHHHHHhCCCCCCeEEEEeec
Confidence                   11  23 9999998877554     47899999999999  999998664

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....

>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes

Probab=98.74  E-value=1.2e-07  Score=76.50  Aligned_cols=121  Identities=13%  Similarity=0.095  Sum_probs=83.5

Q ss_pred             HHHHHHHhhccCCCe-EEEEcCcchHHHHHHHH-hCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccc
Q 026513           59 LCLLLLRRLIKGGEL-FLDYGTGSGILGIAAIK-FGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTAS  136 (237)
Q Consensus        59 ~~~~~l~~~~~~~~~-vLDlG~G~G~~~~~la~-~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~  136 (237)
                      -++++|++.+++... |||||||||.-+.+++. .+.-+-.-.|.++..+...+..+...+++|..   ..+..|+.+..
T Consensus        13 pIl~vL~~~l~~~~~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~---~P~~lDv~~~~   89 (204)
T PF06080_consen   13 PILEVLKQYLPDSGTRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVR---PPLALDVSAPP   89 (204)
T ss_pred             HHHHHHHHHhCccCceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccC---CCeEeecCCCC
Confidence            456666666665555 99999999999999886 47777789999999988888888777776522   22233433210


Q ss_pred             ccccccccccccccccccCCCCCCceeEEEEeCChHHH-----HHHHHHHhHhcCCCeEEEEe
Q 026513          137 MNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLNPL-----LQLADHIVSYAKPGAVVGIS  194 (237)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~~~~-----~~~l~~~~~~L~~gG~liis  194 (237)
                      -+-            .........+||.|+|.-++|.+     ..++..+.++|++||.|++-
T Consensus        90 w~~------------~~~~~~~~~~~D~i~~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~Y  140 (204)
T PF06080_consen   90 WPW------------ELPAPLSPESFDAIFCINMLHISPWSAVEGLFAGAARLLKPGGLLFLY  140 (204)
T ss_pred             Ccc------------ccccccCCCCcceeeehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEe
Confidence            000            00001124689999996655543     56899999999999999984

The function of this family is unknown.

>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length

Probab=98.73  E-value=8.6e-07  Score=74.75  Aligned_cols=120  Identities=15%  Similarity=0.164  Sum_probs=90.0

Q ss_pred             CCeEEEEcCcchHHHHHHH-HhCC--CeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccc
Q 026513           71 GELFLDYGTGSGILGIAAI-KFGA--AMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVED  147 (237)
Q Consensus        71 ~~~vLDlG~G~G~~~~~la-~~~~--~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  147 (237)
                      .-+|+||.||.|.+..-+. ..+.  .+|...|+|+..++..++.++.+|+.+   .+.|.++|.++..           
T Consensus       136 pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~---i~~f~~~dAfd~~-----------  201 (311)
T PF12147_consen  136 PVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLED---IARFEQGDAFDRD-----------  201 (311)
T ss_pred             ceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCcc---ceEEEecCCCCHh-----------
Confidence            4589999999998877554 4443  689999999999999999999999997   3599999998532           


Q ss_pred             cccccccCCCCCCceeEEEEeCChHHH------HHHHHHHhHhcCCCeEEEEecc-CCCCHHHHHHHHhh
Q 026513          148 LSSHKIRGISQTEKYDVVIANILLNPL------LQLADHIVSYAKPGAVVGISGI-LSEQLPHIINRYSE  210 (237)
Q Consensus       148 ~~~~~~~~~~~~~~fD~I~~n~~~~~~------~~~l~~~~~~L~~gG~liis~~-~~~~~~~~~~~~~~  210 (237)
                          ....+  ...++++++...++.+      ...+.-+...+.|||+|+..+- +-++.+-+...+..
T Consensus       202 ----~l~~l--~p~P~l~iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwHPQle~IAr~Lts  265 (311)
T PF12147_consen  202 ----SLAAL--DPAPTLAIVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTGQPWHPQLEMIARVLTS  265 (311)
T ss_pred             ----Hhhcc--CCCCCEEEEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCCcchHHHHHHHhc
Confidence                11112  4578999988876544      3457888999999999999864 45555555555443

It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.

>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family

Probab=98.73  E-value=1.6e-07  Score=87.04  Aligned_cols=83  Identities=20%  Similarity=0.127  Sum_probs=56.1

Q ss_pred             CCCeEEEEcCcchHHHHHHHHhC---------CCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccc
Q 026513           70 GGELFLDYGTGSGILGIAAIKFG---------AAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNER  140 (237)
Q Consensus        70 ~~~~vLDlG~G~G~~~~~la~~~---------~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~  140 (237)
                      ...+|||.|||+|.+...++...         ...++|+|+++.+++.++.++...+..    .+.+...|......   
T Consensus        31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~~----~~~i~~~d~l~~~~---  103 (524)
T TIGR02987        31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFALL----EINVINFNSLSYVL---  103 (524)
T ss_pred             cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCCC----Cceeeecccccccc---
Confidence            34589999999999998877431         146899999999999999998766511    24444555431100   


Q ss_pred             ccccccccccccccCCCCCCceeEEEEeCCh
Q 026513          141 VDGVVEDLSSHKIRGISQTEKYDVVIANILL  171 (237)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~  171 (237)
                                 .. .....++||+|++|||+
T Consensus       104 -----------~~-~~~~~~~fD~IIgNPPy  122 (524)
T TIGR02987       104 -----------LN-IESYLDLFDIVITNPPY  122 (524)
T ss_pred             -----------cc-cccccCcccEEEeCCCc
Confidence                       00 00113589999999995

Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.

>PRK04148 hypothetical protein; Provisional

Probab=98.72  E-value=1.3e-07  Score=71.52  Aligned_cols=97  Identities=13%  Similarity=0.130  Sum_probs=71.5

Q ss_pred             CCCeEEEEcCcchH-HHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccccc
Q 026513           70 GGELFLDYGTGSGI-LGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDL  148 (237)
Q Consensus        70 ~~~~vLDlG~G~G~-~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~  148 (237)
                      ++.+++|+|||.|. ++..+++.| ..|+++|+++.+++.++++    +       +.++.+|++++...          
T Consensus        16 ~~~kileIG~GfG~~vA~~L~~~G-~~ViaIDi~~~aV~~a~~~----~-------~~~v~dDlf~p~~~----------   73 (134)
T PRK04148         16 KNKKIVELGIGFYFKVAKKLKESG-FDVIVIDINEKAVEKAKKL----G-------LNAFVDDLFNPNLE----------   73 (134)
T ss_pred             cCCEEEEEEecCCHHHHHHHHHCC-CEEEEEECCHHHHHHHHHh----C-------CeEEECcCCCCCHH----------
Confidence            45789999999996 888888876 4699999999998888765    2       55778998854321          


Q ss_pred             ccccccCCCCCCceeEEEE-eCChHHHHHHHHHHhHhcCCCeEEEEeccCCCC
Q 026513          149 SSHKIRGISQTEKYDVVIA-NILLNPLLQLADHIVSYAKPGAVVGISGILSEQ  200 (237)
Q Consensus       149 ~~~~~~~~~~~~~fD~I~~-n~~~~~~~~~l~~~~~~L~~gG~liis~~~~~~  200 (237)
                               .-+.+|+|++ .||.+....+++-..   +-|.-+++..+..+.
T Consensus        74 ---------~y~~a~liysirpp~el~~~~~~la~---~~~~~~~i~~l~~e~  114 (134)
T PRK04148         74 ---------IYKNAKLIYSIRPPRDLQPFILELAK---KINVPLIIKPLSGEE  114 (134)
T ss_pred             ---------HHhcCCEEEEeCCCHHHHHHHHHHHH---HcCCCEEEEcCCCCC
Confidence                     1357999997 777777766655444   457777776665554

>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]

Probab=98.71  E-value=2.4e-07  Score=80.07  Aligned_cols=176  Identities=17%  Similarity=0.260  Sum_probs=114.3

Q ss_pred             ceeEEeCcccccCCCCch--hHHHHHHHHHhhccCCCeEEEEcCcchHHHHHHHHhC-CCeEEEEeCCHHHHHHHHHHH-
Q 026513           38 ATNIILNPGLAFGSGEHA--TTKLCLLLLRRLIKGGELFLDYGTGSGILGIAAIKFG-AAMSVGADIDPQAIKSAHQNA-  113 (237)
Q Consensus        38 ~~~~~~~~~~~f~~g~~~--~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~la~~~-~~~v~~vD~s~~~i~~a~~~~-  113 (237)
                      ...+.++.+..|.+-...  .+.+....+ +..+.-.+||-+|.|.|.-...+.+++ ..+|+-+|.+|+|++.++.+. 
T Consensus       256 d~rLYldG~LQfsTrDe~RYhEsLV~pal-s~~~~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~v  334 (508)
T COG4262         256 DLRLYLDGGLQFSTRDEYRYHESLVYPAL-SSVRGARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATV  334 (508)
T ss_pred             ceEEEEcCceeeeechhhhhhheeeeccc-ccccccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhH
Confidence            346677777777642211  111111111 112345689999999999999999986 899999999999999999553 


Q ss_pred             --HHcCCCCCcceEEeccCccccccccccccccccccccccccCCCCCCceeEEEEeCCh--------HHHHHHHHHHhH
Q 026513          114 --ALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILL--------NPLLQLADHIVS  183 (237)
Q Consensus       114 --~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~--------~~~~~~l~~~~~  183 (237)
                        ..|+-+...-+++++..|.++..         .          .....||+||.+.+-        -...++...+.+
T Consensus       335 lr~~N~~sf~dpRv~Vv~dDAf~wl---------r----------~a~~~fD~vIVDl~DP~tps~~rlYS~eFY~ll~~  395 (508)
T COG4262         335 LRALNQGSFSDPRVTVVNDDAFQWL---------R----------TAADMFDVVIVDLPDPSTPSIGRLYSVEFYRLLSR  395 (508)
T ss_pred             hhhhccCCccCCeeEEEeccHHHHH---------H----------hhcccccEEEEeCCCCCCcchhhhhhHHHHHHHHH
Confidence              23333444457888888887321         1          114589999996641        112367788999


Q ss_pred             hcCCCeEEEEe---ccCCCC----HHHHHHHHhh--ccccceeeecCCEEEEEEEEccc
Q 026513          184 YAKPGAVVGIS---GILSEQ----LPHIINRYSE--FLEDILVSEMDDWTCVSGKKKRV  233 (237)
Q Consensus       184 ~L~~gG~liis---~~~~~~----~~~~~~~~~~--~~~~~~~~~~~~w~~~~~~~~~~  233 (237)
                      .|+++|.+++.   .+...+    ....++....  ..-.+.+++.|+|..+.+.+.+.
T Consensus       396 ~l~e~Gl~VvQags~y~tp~vfw~i~aTik~AG~~~~Pyhv~VPTFGeWGf~l~~~~~~  454 (508)
T COG4262         396 HLAETGLMVVQAGSPYFTPRVFWRIDATIKSAGYRVWPYHVHVPTFGEWGFILAAPGDA  454 (508)
T ss_pred             hcCcCceEEEecCCCccCCceeeeehhHHHhCcceeeeeEEecCcccccceeecccccC
Confidence            99999999994   333332    1222222221  13466778999999999887653

>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins

Probab=98.71  E-value=2e-07  Score=79.70  Aligned_cols=119  Identities=17%  Similarity=0.208  Sum_probs=88.9

Q ss_pred             ccCCCeEEEEcCcchHHHHHHHHh--CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccc
Q 026513           68 IKGGELFLDYGTGSGILGIAAIKF--GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVV  145 (237)
Q Consensus        68 ~~~~~~vLDlG~G~G~~~~~la~~--~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  145 (237)
                      ..+|.+|||++++.|+-+..++..  +...+++.|+++.-+...+++++..|+.+    +.+...|.....         
T Consensus        83 ~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~----v~~~~~D~~~~~---------  149 (283)
T PF01189_consen   83 PQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFN----VIVINADARKLD---------  149 (283)
T ss_dssp             TTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SS----EEEEESHHHHHH---------
T ss_pred             ccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCce----EEEEeecccccc---------
Confidence            568899999999999999888865  35789999999999999999999999886    666667765321         


Q ss_pred             cccccccccCCCCCCceeEEEEeCCh-------------------------HHHHHHHHHHhHhc----CCCeEEEEecc
Q 026513          146 EDLSSHKIRGISQTEKYDVVIANILL-------------------------NPLLQLADHIVSYA----KPGAVVGISGI  196 (237)
Q Consensus       146 ~~~~~~~~~~~~~~~~fD~I~~n~~~-------------------------~~~~~~l~~~~~~L----~~gG~liis~~  196 (237)
                               .......||.|++++|-                         ....+++..+.+++    +|||+++.|..
T Consensus       150 ---------~~~~~~~fd~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTC  220 (283)
T PF01189_consen  150 ---------PKKPESKFDRVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTC  220 (283)
T ss_dssp             ---------HHHHTTTEEEEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEES
T ss_pred             ---------ccccccccchhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEec
Confidence                     11113469999999981                         22346899999999    99999999833


Q ss_pred             --CCCCHHHHHHHH
Q 026513          197 --LSEQLPHIINRY  208 (237)
Q Consensus       197 --~~~~~~~~~~~~  208 (237)
                        ..++-+++...+
T Consensus       221 S~~~eENE~vV~~f  234 (283)
T PF01189_consen  221 SLSPEENEEVVEKF  234 (283)
T ss_dssp             HHHGGGTHHHHHHH
T ss_pred             cHHHHHHHHHHHHH
Confidence              333334444444

In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....

>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G

Probab=98.69  E-value=1.3e-07  Score=75.66  Aligned_cols=96  Identities=20%  Similarity=0.213  Sum_probs=77.9

Q ss_pred             eEEEEcCcchHHHHHHH-HhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccccccc
Q 026513           73 LFLDYGTGSGILGIAAI-KFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDLSSH  151 (237)
Q Consensus        73 ~vLDlG~G~G~~~~~la-~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~  151 (237)
                      +++|+|+|.|.-++.++ ..+..+++.+|....-+...+.....-+++|    +.++++.+.+                 
T Consensus        51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~n----v~v~~~R~E~-----------------  109 (184)
T PF02527_consen   51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLSN----VEVINGRAEE-----------------  109 (184)
T ss_dssp             EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-SS----EEEEES-HHH-----------------
T ss_pred             eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCCC----EEEEEeeecc-----------------
Confidence            89999999999999887 4578889999999999999999999999987    8888887652                 


Q ss_pred             cccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEe
Q 026513          152 KIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGIS  194 (237)
Q Consensus       152 ~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis  194 (237)
                          .....+||+|++-.+. .+..++..+..++++||.+++-
T Consensus       110 ----~~~~~~fd~v~aRAv~-~l~~l~~~~~~~l~~~G~~l~~  147 (184)
T PF02527_consen  110 ----PEYRESFDVVTARAVA-PLDKLLELARPLLKPGGRLLAY  147 (184)
T ss_dssp             ----TTTTT-EEEEEEESSS-SHHHHHHHHGGGEEEEEEEEEE
T ss_pred             ----cccCCCccEEEeehhc-CHHHHHHHHHHhcCCCCEEEEE
Confidence                1226799999998854 4567888899999999998874

Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.

>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes

Probab=98.67  E-value=1.5e-07  Score=78.25  Aligned_cols=89  Identities=17%  Similarity=0.163  Sum_probs=66.8

Q ss_pred             CCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccC-ccccccccccccccccccc
Q 026513           71 GELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPD-RTFTASMNERVDGVVEDLS  149 (237)
Q Consensus        71 ~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~-d~~~~~~~~~~~~~~~~~~  149 (237)
                      ..++||||+|.|..+..++.. ..+|+++|+|+.|...    ++..|..       ++.. |+.                
T Consensus        95 ~~~lLDlGAGdG~VT~~l~~~-f~~v~aTE~S~~Mr~r----L~~kg~~-------vl~~~~w~----------------  146 (265)
T PF05219_consen   95 DKSLLDLGAGDGEVTERLAPL-FKEVYATEASPPMRWR----LSKKGFT-------VLDIDDWQ----------------  146 (265)
T ss_pred             CCceEEecCCCcHHHHHHHhh-cceEEeecCCHHHHHH----HHhCCCe-------EEehhhhh----------------
Confidence            468999999999999999887 7779999999999544    4444533       2222 221                


Q ss_pred             cccccCCCCCCceeEEEEeCChHHH---HHHHHHHhHhcCCCeEEEEe
Q 026513          150 SHKIRGISQTEKYDVVIANILLNPL---LQLADHIVSYAKPGAVVGIS  194 (237)
Q Consensus       150 ~~~~~~~~~~~~fD~I~~n~~~~~~---~~~l~~~~~~L~~gG~liis  194 (237)
                           .  .+.+||+|.|--+++.-   ..+++.+++.|+|+|+++++
T Consensus       147 -----~--~~~~fDvIscLNvLDRc~~P~~LL~~i~~~l~p~G~lilA  187 (265)
T PF05219_consen  147 -----Q--TDFKFDVISCLNVLDRCDRPLTLLRDIRRALKPNGRLILA  187 (265)
T ss_pred             -----c--cCCceEEEeehhhhhccCCHHHHHHHHHHHhCCCCEEEEE
Confidence                 1  14589999997665432   46899999999999999985

The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.

>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]

Probab=98.65  E-value=3.4e-07  Score=70.99  Aligned_cols=104  Identities=15%  Similarity=0.262  Sum_probs=78.3

Q ss_pred             cCCCeEEEEcCcchHHHHHHHHhCC--CeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccc
Q 026513           69 KGGELFLDYGTGSGILGIAAIKFGA--AMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVE  146 (237)
Q Consensus        69 ~~~~~vLDlG~G~G~~~~~la~~~~--~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  146 (237)
                      ..|..|||+|.|+|.++.++..+|.  ..++++|+|++......+....         +.++++|.++..      +.+ 
T Consensus        47 esglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p~---------~~ii~gda~~l~------~~l-  110 (194)
T COG3963          47 ESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYPG---------VNIINGDAFDLR------TTL-  110 (194)
T ss_pred             ccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCCC---------ccccccchhhHH------HHH-
Confidence            5678999999999999999887754  5799999999998887765431         557888876311      111 


Q ss_pred             ccccccccCCCCCCceeEEEEeCCh-----HHHHHHHHHHhHhcCCCeEEEEecc
Q 026513          147 DLSSHKIRGISQTEKYDVVIANILL-----NPLLQLADHIVSYAKPGAVVGISGI  196 (237)
Q Consensus       147 ~~~~~~~~~~~~~~~fD~I~~n~~~-----~~~~~~l~~~~~~L~~gG~liis~~  196 (237)
                              ...++..||.|+|..|+     +..-++++.+...|++||.++--.+
T Consensus       111 --------~e~~gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~gg~lvqftY  157 (194)
T COG3963         111 --------GEHKGQFFDSVISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQFTY  157 (194)
T ss_pred             --------hhcCCCeeeeEEeccccccCcHHHHHHHHHHHHHhcCCCCeEEEEEe
Confidence                    12346789999996653     4445789999999999999987544

>PLN02232 ubiquinone biosynthesis methyltransferase

Probab=98.61  E-value=3.7e-07  Score=71.52  Aligned_cols=82  Identities=16%  Similarity=0.182  Sum_probs=60.6

Q ss_pred             EEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccccccccccCCCCCCceeEEEEeCChHH---
Q 026513           97 VGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLNP---  173 (237)
Q Consensus        97 ~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~~~---  173 (237)
                      +|+|+|+.|++.|+++....... ..-++.++++|..+.                    ..++++||+|++...++.   
T Consensus         1 ~GvD~S~~ML~~A~~~~~~~~~~-~~~~i~~~~~d~~~l--------------------p~~~~~fD~v~~~~~l~~~~d   59 (160)
T PLN02232          1 MGLDFSSEQLAVAATRQSLKARS-CYKCIEWIEGDAIDL--------------------PFDDCEFDAVTMGYGLRNVVD   59 (160)
T ss_pred             CeEcCCHHHHHHHHHhhhccccc-CCCceEEEEechhhC--------------------CCCCCCeeEEEecchhhcCCC
Confidence            48999999999998776532210 001378889987631                    223678999999887765   


Q ss_pred             HHHHHHHHhHhcCCCeEEEEeccCCC
Q 026513          174 LLQLADHIVSYAKPGAVVGISGILSE  199 (237)
Q Consensus       174 ~~~~l~~~~~~L~~gG~liis~~~~~  199 (237)
                      ....++++.++|||||.+++.++...
T Consensus        60 ~~~~l~ei~rvLkpGG~l~i~d~~~~   85 (160)
T PLN02232         60 RLRAMKEMYRVLKPGSRVSILDFNKS   85 (160)
T ss_pred             HHHHHHHHHHHcCcCeEEEEEECCCC
Confidence            35679999999999999999876543

>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes

Probab=98.61  E-value=1.9e-07  Score=79.67  Aligned_cols=84  Identities=26%  Similarity=0.351  Sum_probs=47.8

Q ss_pred             CCeEEEEcCcch-HHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHc-CCCCCcceEEeccCcccccccccccccccccc
Q 026513           71 GELFLDYGTGSG-ILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALN-NIGPKKMKLHLVPDRTFTASMNERVDGVVEDL  148 (237)
Q Consensus        71 ~~~vLDlG~G~G-~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~-~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~  148 (237)
                      .-++||||||.. ++.+..++...-+++|+|+++..++.|++++..| ++..   ++.++...-...             
T Consensus       103 ~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N~~L~~---~I~l~~~~~~~~-------------  166 (299)
T PF05971_consen  103 KVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERNPNLES---RIELRKQKNPDN-------------  166 (299)
T ss_dssp             --EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT-T-TT---TEEEEE--ST-S-------------
T ss_pred             ceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhcccccc---ceEEEEcCCccc-------------
Confidence            458999999975 6677666544678999999999999999999999 7775   354443321110             


Q ss_pred             cccccc-CCCCCCceeEEEEeCChHH
Q 026513          149 SSHKIR-GISQTEKYDVVIANILLNP  173 (237)
Q Consensus       149 ~~~~~~-~~~~~~~fD~I~~n~~~~~  173 (237)
                         .+. .....+.||+++||||++.
T Consensus       167 ---i~~~i~~~~e~~dftmCNPPFy~  189 (299)
T PF05971_consen  167 ---IFDGIIQPNERFDFTMCNPPFYS  189 (299)
T ss_dssp             ---STTTSTT--S-EEEEEE-----S
T ss_pred             ---cchhhhcccceeeEEecCCcccc
Confidence               001 1122468999999999743

The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.

>COG3897 Predicted methyltransferase [General function prediction only]

Probab=98.60  E-value=8.7e-08  Score=76.08  Aligned_cols=95  Identities=29%  Similarity=0.392  Sum_probs=74.3

Q ss_pred             CCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccccc
Q 026513           70 GGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDLS  149 (237)
Q Consensus        70 ~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~  149 (237)
                      .|++|||+|+|+|..++..++.|+..|++.|++|..+...+-|+..|+++     +.++..|..                
T Consensus        79 rgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa~angv~-----i~~~~~d~~----------------  137 (218)
T COG3897          79 RGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAAANGVS-----ILFTHADLI----------------  137 (218)
T ss_pred             ccceeeecccccChHHHHHHHhhhHHHHhcCCChHHHHHhhcchhhccce-----eEEeecccc----------------
Confidence            58999999999999999999999999999999999999999999999865     777777753                


Q ss_pred             cccccCCCCCCceeEEEEeCCh-H-HH-HHHHHHHhHhcCCCeEEEE
Q 026513          150 SHKIRGISQTEKYDVVIANILL-N-PL-LQLADHIVSYAKPGAVVGI  193 (237)
Q Consensus       150 ~~~~~~~~~~~~fD~I~~n~~~-~-~~-~~~l~~~~~~L~~gG~lii  193 (237)
                             ..+..||+++..-.+ . .. .++++ +...++..|..++
T Consensus       138 -------g~~~~~Dl~LagDlfy~~~~a~~l~~-~~~~l~~~g~~vl  176 (218)
T COG3897         138 -------GSPPAFDLLLAGDLFYNHTEADRLIP-WKDRLAEAGAAVL  176 (218)
T ss_pred             -------CCCcceeEEEeeceecCchHHHHHHH-HHHHHHhCCCEEE
Confidence                   136789999985543 2 22 34455 5566665565554

>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=98.59  E-value=2.1e-07  Score=76.24  Aligned_cols=99  Identities=15%  Similarity=0.170  Sum_probs=73.6

Q ss_pred             ccCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEec-cCcccccccccccccccc
Q 026513           68 IKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLV-PDRTFTASMNERVDGVVE  146 (237)
Q Consensus        68 ~~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~-~~d~~~~~~~~~~~~~~~  146 (237)
                      ..+|.++||+|+.||.|+..+.+.|+.+|+|+|.....+..--   +.+.      ++... ..|+....          
T Consensus        77 ~~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~kL---R~d~------rV~~~E~tN~r~l~----------  137 (245)
T COG1189          77 DVKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHWKL---RNDP------RVIVLERTNVRYLT----------  137 (245)
T ss_pred             CCCCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCHhH---hcCC------cEEEEecCChhhCC----------
Confidence            4679999999999999999999999999999999987665422   1111      12222 22332100          


Q ss_pred             ccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEE
Q 026513          147 DLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGI  193 (237)
Q Consensus       147 ~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~lii  193 (237)
                              .....+..|+++|+.++-++..++..+..++++++.++.
T Consensus       138 --------~~~~~~~~d~~v~DvSFISL~~iLp~l~~l~~~~~~~v~  176 (245)
T COG1189         138 --------PEDFTEKPDLIVIDVSFISLKLILPALLLLLKDGGDLVL  176 (245)
T ss_pred             --------HHHcccCCCeEEEEeehhhHHHHHHHHHHhcCCCceEEE
Confidence                    001134789999999999999999999999999998876

>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2

Probab=98.58  E-value=1.8e-07  Score=82.92  Aligned_cols=145  Identities=21%  Similarity=0.324  Sum_probs=94.0

Q ss_pred             eEEeCcccccCCCCchhHHHHHH---HHHhhccCCCeEEEEcCcchHHHHHHHHh--CCCeEEEEeCCHHHHHHHHHHHH
Q 026513           40 NIILNPGLAFGSGEHATTKLCLL---LLRRLIKGGELFLDYGTGSGILGIAAIKF--GAAMSVGADIDPQAIKSAHQNAA  114 (237)
Q Consensus        40 ~~~~~~~~~f~~g~~~~~~~~~~---~l~~~~~~~~~vLDlG~G~G~~~~~la~~--~~~~v~~vD~s~~~i~~a~~~~~  114 (237)
                      .+-.+|.|.|+   +..+-+++.   ........+.++||.-+|+|.-++..+..  +..+|++-|+|+.+++..++|+.
T Consensus        19 ~vFYNP~~~~n---RDlsvl~~~~~~~~~~~~~~~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~   95 (377)
T PF02005_consen   19 PVFYNPVMEFN---RDLSVLAIRYLAVLKEKRKGPIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLE   95 (377)
T ss_dssp             SSS--GGGHHH---HHHHHHH---HHHHHHCH-S-EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHH
T ss_pred             CcccCcchhcc---cceeehhHHHHHHhhhhhcCCceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHh
Confidence            34557777776   556666633   22222234568999999999999988865  56889999999999999999999


Q ss_pred             HcCCCCCcceEEeccCccccccccccccccccccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEe
Q 026513          115 LNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGIS  194 (237)
Q Consensus       115 ~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis  194 (237)
                      .|++...  ++.+.+.|....                 |.  .....||+|=.+| +.....+++.+.+.++.||.|+++
T Consensus        96 ~N~~~~~--~~~v~~~DAn~l-----------------l~--~~~~~fD~IDlDP-fGSp~pfldsA~~~v~~gGll~vT  153 (377)
T PF02005_consen   96 LNGLEDE--RIEVSNMDANVL-----------------LY--SRQERFDVIDLDP-FGSPAPFLDSALQAVKDGGLLCVT  153 (377)
T ss_dssp             HCT-SGC--CEEEEES-HHHH-----------------HC--HSTT-EEEEEE---SS--HHHHHHHHHHEEEEEEEEEE
T ss_pred             hccccCc--eEEEehhhHHHH-----------------hh--hccccCCEEEeCC-CCCccHhHHHHHHHhhcCCEEEEe
Confidence            9999863  356667776521                 11  2367899999998 555567889999999999999995


Q ss_pred             cc-----CCCCHHHHHHHHh
Q 026513          195 GI-----LSEQLPHIINRYS  209 (237)
Q Consensus       195 ~~-----~~~~~~~~~~~~~  209 (237)
                      +-     -..........|.
T Consensus       154 aTD~a~L~G~~~~~~~r~Yg  173 (377)
T PF02005_consen  154 ATDTAVLCGSYPEKCFRKYG  173 (377)
T ss_dssp             E--HHHHTTSSHHHHHHHHS
T ss_pred             ccccccccCCChhHHHHhcC
Confidence            21     2334444555444

1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.

>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like

Probab=98.58  E-value=1.2e-07  Score=76.99  Aligned_cols=101  Identities=15%  Similarity=0.051  Sum_probs=69.3

Q ss_pred             CCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccccccc
Q 026513           71 GELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDLSS  150 (237)
Q Consensus        71 ~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~  150 (237)
                      ..++||.|+|-|..+..+...-+.+|..+|.++..++.|++.+......    ...+.+..+.                 
T Consensus        56 ~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl~~a~~~l~~~~~~----v~~~~~~gLQ-----------------  114 (218)
T PF05891_consen   56 FNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFLEQAKEYLGKDNPR----VGEFYCVGLQ-----------------  114 (218)
T ss_dssp             -SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHHHHHHHHTCCGGCC----EEEEEES-GG-----------------
T ss_pred             cceEEecccccchhHHHHHHHhcCEeEEeccCHHHHHHHHHHhcccCCC----cceEEecCHh-----------------
Confidence            4689999999999998776544889999999999999999876542111    1334344332                 


Q ss_pred             ccccCCCC-CCceeEEEEeCChHHHH-----HHHHHHhHhcCCCeEEEEecc
Q 026513          151 HKIRGISQ-TEKYDVVIANILLNPLL-----QLADHIVSYAKPGAVVGISGI  196 (237)
Q Consensus       151 ~~~~~~~~-~~~fD~I~~n~~~~~~~-----~~l~~~~~~L~~gG~liis~~  196 (237)
                          .+.| ..+||+|.+...+.++.     +++.++...|+|+|.+++-..
T Consensus       115 ----~f~P~~~~YDlIW~QW~lghLTD~dlv~fL~RCk~~L~~~G~IvvKEN  162 (218)
T PF05891_consen  115 ----DFTPEEGKYDLIWIQWCLGHLTDEDLVAFLKRCKQALKPNGVIVVKEN  162 (218)
T ss_dssp             ----G----TT-EEEEEEES-GGGS-HHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             ----hccCCCCcEeEEEehHhhccCCHHHHHHHHHHHHHhCcCCcEEEEEec
Confidence                2233 36999999999876553     679999999999999999533

; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.

>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]

Probab=98.58  E-value=2.3e-07  Score=77.19  Aligned_cols=79  Identities=18%  Similarity=0.336  Sum_probs=65.6

Q ss_pred             hccCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccc
Q 026513           67 LIKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVE  146 (237)
Q Consensus        67 ~~~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  146 (237)
                      .++++..|||+|.|+|.++..+.+. +++|+++|+++.++...++....-+.++   +.+++.+|....           
T Consensus        55 ~~k~tD~VLEvGPGTGnLT~~lLe~-~kkVvA~E~Dprmvael~krv~gtp~~~---kLqV~~gD~lK~-----------  119 (315)
T KOG0820|consen   55 DLKPTDVVLEVGPGTGNLTVKLLEA-GKKVVAVEIDPRMVAELEKRVQGTPKSG---KLQVLHGDFLKT-----------  119 (315)
T ss_pred             CCCCCCEEEEeCCCCCHHHHHHHHh-cCeEEEEecCcHHHHHHHHHhcCCCccc---eeeEEecccccC-----------
Confidence            3678899999999999999999988 5669999999999999988877555544   688899998631           


Q ss_pred             ccccccccCCCCCCceeEEEEeCCh
Q 026513          147 DLSSHKIRGISQTEKYDVVIANILL  171 (237)
Q Consensus       147 ~~~~~~~~~~~~~~~fD~I~~n~~~  171 (237)
                                 +...||.+|+|.|+
T Consensus       120 -----------d~P~fd~cVsNlPy  133 (315)
T KOG0820|consen  120 -----------DLPRFDGCVSNLPY  133 (315)
T ss_pred             -----------CCcccceeeccCCc
Confidence                       13579999999885

>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=98.52  E-value=9.3e-07  Score=76.71  Aligned_cols=128  Identities=20%  Similarity=0.312  Sum_probs=96.6

Q ss_pred             ceeEEeCcccccCCCCchhHHHHHHHHHhhccCCCeEEEEcCcchHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHHc
Q 026513           38 ATNIILNPGLAFGSGEHATTKLCLLLLRRLIKGGELFLDYGTGSGILGIAAIKF-GAAMSVGADIDPQAIKSAHQNAALN  116 (237)
Q Consensus        38 ~~~~~~~~~~~f~~g~~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~la~~-~~~~v~~vD~s~~~i~~a~~~~~~~  116 (237)
                      .-.+-.+|.|.|.   +..+-.++..+.+..  ..+|+|.-+|+|.-++..+.. +..+++.-|+||.+++.+++|++.|
T Consensus        25 ~~pVFYNP~m~~N---RDlsV~~l~~~~~~~--~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N   99 (380)
T COG1867          25 RAPVFYNPAMEFN---RDLSVLVLKAFGKLL--PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLN   99 (380)
T ss_pred             CCcceeCchhhhc---cchhHHHHHHhhccC--CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhc
Confidence            3456788999988   555666666654322  678999999999999998865 5558999999999999999999999


Q ss_pred             CCCCCcceEEeccCccccccccccccccccccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEe
Q 026513          117 NIGPKKMKLHLVPDRTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGIS  194 (237)
Q Consensus       117 ~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis  194 (237)
                      ...+    ...+..|...                 .|...  ...||+|=.+| +.....+++.+.+.++.||.|.++
T Consensus       100 ~~~~----~~v~n~DAN~-----------------lm~~~--~~~fd~IDiDP-FGSPaPFlDaA~~s~~~~G~l~vT  153 (380)
T COG1867         100 SGED----AEVINKDANA-----------------LLHEL--HRAFDVIDIDP-FGSPAPFLDAALRSVRRGGLLCVT  153 (380)
T ss_pred             Cccc----ceeecchHHH-----------------HHHhc--CCCccEEecCC-CCCCchHHHHHHHHhhcCCEEEEE
Confidence            4443    5555666542                 11121  37899999998 444456778888899999999985

>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]

Probab=98.48  E-value=4.2e-07  Score=77.90  Aligned_cols=107  Identities=20%  Similarity=0.270  Sum_probs=82.2

Q ss_pred             hhccCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHH-------HHHHHHHHcCCCCCcceEEeccCcccccccc
Q 026513           66 RLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIK-------SAHQNAALNNIGPKKMKLHLVPDRTFTASMN  138 (237)
Q Consensus        66 ~~~~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~-------~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~  138 (237)
                      ...++|+-|+|...|||.+.+..++.|+- |+|.||+-.++.       ..+.|+++.|.+...  +.++.+|..++   
T Consensus       204 Amv~pGdivyDPFVGTGslLvsaa~FGa~-viGtDIDyr~vragrg~~~si~aNFkQYg~~~~f--ldvl~~D~sn~---  277 (421)
T KOG2671|consen  204 AMVKPGDIVYDPFVGTGSLLVSAAHFGAY-VIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQF--LDVLTADFSNP---  277 (421)
T ss_pred             hccCCCCEEecCccccCceeeehhhhcce-eeccccchheeecccCCCcchhHhHHHhCCcchh--hheeeecccCc---
Confidence            34689999999999999999999999655 999999999987       356788888866432  34556776532   


Q ss_pred             ccccccccccccccccCCCCCCceeEEEEeCCh------------------------------------HHHHHHHHHHh
Q 026513          139 ERVDGVVEDLSSHKIRGISQTEKYDVVIANILL------------------------------------NPLLQLADHIV  182 (237)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~------------------------------------~~~~~~l~~~~  182 (237)
                                      .+..+..||.|+|+||+                                    ..+.+++.-..
T Consensus       278 ----------------~~rsn~~fDaIvcDPPYGVRe~~rk~~~k~~~r~~~~~~~~~h~p~~~~ysl~~~v~dll~fss  341 (421)
T KOG2671|consen  278 ----------------PLRSNLKFDAIVCDPPYGVREGARKTGKKKSVRTTEESSRGDHYPSTEQYSLSSLVYDLLCFSS  341 (421)
T ss_pred             ----------------chhhcceeeEEEeCCCcchhhhhhhhcccCcccCcccccccccCCccchhHHHHHHhhHHHhhH
Confidence                            33346799999999993                                    11235677888


Q ss_pred             HhcCCCeEEEEe
Q 026513          183 SYAKPGAVVGIS  194 (237)
Q Consensus       183 ~~L~~gG~liis  194 (237)
                      +.|..||++++-
T Consensus       342 ~~L~~ggrlv~w  353 (421)
T KOG2671|consen  342 RRLVDGGRLVFW  353 (421)
T ss_pred             hhhhcCceEEEe
Confidence            999999999873

>COG4076 Predicted RNA methylase [General function prediction only]

Probab=98.47  E-value=1.9e-07  Score=73.75  Aligned_cols=96  Identities=22%  Similarity=0.306  Sum_probs=76.7

Q ss_pred             CCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccccccc
Q 026513           71 GELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDLSS  150 (237)
Q Consensus        71 ~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~  150 (237)
                      ...+.|+|+|+|.++..+++. +.+|++++.+|...+.|++|+..+|..+    ++++.+|..+                
T Consensus        33 ~d~~~DLGaGsGiLs~~Aa~~-A~rViAiE~dPk~a~~a~eN~~v~g~~n----~evv~gDA~~----------------   91 (252)
T COG4076          33 EDTFADLGAGSGILSVVAAHA-AERVIAIEKDPKRARLAEENLHVPGDVN----WEVVVGDARD----------------   91 (252)
T ss_pred             hhceeeccCCcchHHHHHHhh-hceEEEEecCcHHHHHhhhcCCCCCCcc----eEEEeccccc----------------
Confidence            368999999999999999888 8889999999999999999998888776    8999999863                


Q ss_pred             ccccCCCCCCceeEEEEeCCh-----HHHHHHHHHHhHhcCCCeEEEE
Q 026513          151 HKIRGISQTEKYDVVIANILL-----NPLLQLADHIVSYAKPGAVVGI  193 (237)
Q Consensus       151 ~~~~~~~~~~~fD~I~~n~~~-----~~~~~~l~~~~~~L~~gG~lii  193 (237)
                           ... ...|+|+|-+.-     +.+-.+++.+...|+-++.++-
T Consensus        92 -----y~f-e~ADvvicEmlDTaLi~E~qVpV~n~vleFLr~d~tiiP  133 (252)
T COG4076          92 -----YDF-ENADVVICEMLDTALIEEKQVPVINAVLEFLRYDPTIIP  133 (252)
T ss_pred             -----ccc-cccceeHHHHhhHHhhcccccHHHHHHHHHhhcCCcccc
Confidence                 211 468999986631     2223457777888888888764

>KOG2940 consensus Predicted methyltransferase [General function prediction only]

Probab=98.45  E-value=9.2e-07  Score=72.05  Aligned_cols=114  Identities=14%  Similarity=0.008  Sum_probs=84.3

Q ss_pred             cCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccccc
Q 026513           69 KGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDL  148 (237)
Q Consensus        69 ~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~  148 (237)
                      +....++|||||.|.+...+...+..+++-+|.|..|++.++..      .+..+.+....+|-..              
T Consensus        71 k~fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~~------qdp~i~~~~~v~DEE~--------------  130 (325)
T KOG2940|consen   71 KSFPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRDA------QDPSIETSYFVGDEEF--------------  130 (325)
T ss_pred             hhCcceeecccchhhhhHHHHhcchhheeeeecchHHHHHhhcc------CCCceEEEEEecchhc--------------
Confidence            34568999999999999999988899999999999999988743      2222335555555221              


Q ss_pred             ccccccCCCCCCceeEEEEeCChHHHH---HHHHHHhHhcCCCeEEEEeccCCCCHHHHHHHH
Q 026513          149 SSHKIRGISQTEKYDVVIANILLNPLL---QLADHIVSYAKPGAVVGISGILSEQLPHIINRY  208 (237)
Q Consensus       149 ~~~~~~~~~~~~~fD~I~~n~~~~~~~---~~l~~~~~~L~~gG~liis~~~~~~~~~~~~~~  208 (237)
                            ..+.+.++|+|++...+|+..   ..+-+++..|||+|.++-+-+-.+...++...+
T Consensus       131 ------Ldf~ens~DLiisSlslHW~NdLPg~m~~ck~~lKPDg~FiasmlggdTLyELR~sl  187 (325)
T KOG2940|consen  131 ------LDFKENSVDLIISSLSLHWTNDLPGSMIQCKLALKPDGLFIASMLGGDTLYELRCSL  187 (325)
T ss_pred             ------ccccccchhhhhhhhhhhhhccCchHHHHHHHhcCCCccchhHHhccccHHHHHHHh
Confidence                  113367999999999888775   346778999999999998766666555554443

>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e

Probab=98.45  E-value=1.5e-06  Score=73.60  Aligned_cols=117  Identities=16%  Similarity=0.268  Sum_probs=82.1

Q ss_pred             cccCCCCchhHHHHHHHHHhh-ccCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceE
Q 026513           47 LAFGSGEHATTKLCLLLLRRL-IKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKL  125 (237)
Q Consensus        47 ~~f~~g~~~~~~~~~~~l~~~-~~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v  125 (237)
                      -.+|...-.....+...+... +.++..|||+|+|.|.++..+++.+ .+++++|+++..++..++....+  .    ++
T Consensus         6 k~~gQnFL~~~~~~~~Iv~~~~~~~~~~VlEiGpG~G~lT~~L~~~~-~~v~~vE~d~~~~~~L~~~~~~~--~----~~   78 (262)
T PF00398_consen    6 KSLGQNFLVDPNIADKIVDALDLSEGDTVLEIGPGPGALTRELLKRG-KRVIAVEIDPDLAKHLKERFASN--P----NV   78 (262)
T ss_dssp             CGCTSSEEEHHHHHHHHHHHHTCGTTSEEEEESSTTSCCHHHHHHHS-SEEEEEESSHHHHHHHHHHCTTC--S----SE
T ss_pred             CCCCcCeeCCHHHHHHHHHhcCCCCCCEEEEeCCCCccchhhHhccc-CcceeecCcHhHHHHHHHHhhhc--c----cc
Confidence            344544444445555555443 3478899999999999999999886 88999999999999888765522  2    48


Q ss_pred             EeccCccccccccccccccccccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCC
Q 026513          126 HLVPDRTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKP  187 (237)
Q Consensus       126 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~  187 (237)
                      +++.+|+.+....+                . .......|++|.|+.....++.++...-+.
T Consensus        79 ~vi~~D~l~~~~~~----------------~-~~~~~~~vv~NlPy~is~~il~~ll~~~~~  123 (262)
T PF00398_consen   79 EVINGDFLKWDLYD----------------L-LKNQPLLVVGNLPYNISSPILRKLLELYRF  123 (262)
T ss_dssp             EEEES-TTTSCGGG----------------H-CSSSEEEEEEEETGTGHHHHHHHHHHHGGG
T ss_pred             eeeecchhccccHH----------------h-hcCCceEEEEEecccchHHHHHHHhhcccc
Confidence            89999987422110                0 024678999999987777777777764343

g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....

>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]

Probab=98.43  E-value=1.1e-06  Score=71.80  Aligned_cols=97  Identities=22%  Similarity=0.227  Sum_probs=78.5

Q ss_pred             CCeEEEEcCcchHHHHHHH-HhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccccc
Q 026513           71 GELFLDYGTGSGILGIAAI-KFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDLS  149 (237)
Q Consensus        71 ~~~vLDlG~G~G~~~~~la-~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~  149 (237)
                      +.+++|||+|.|.-++.+| ..+..+++.+|....-+.-.+......++.|    ++++++.+.+               
T Consensus        68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~n----v~i~~~RaE~---------------  128 (215)
T COG0357          68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLEN----VEIVHGRAEE---------------  128 (215)
T ss_pred             CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCCCC----eEEehhhHhh---------------
Confidence            5899999999999999888 4566779999999999999999989889987    8888887652               


Q ss_pred             cccccCCCCCCc-eeEEEEeCChHHHHHHHHHHhHhcCCCeEEEE
Q 026513          150 SHKIRGISQTEK-YDVVIANILLNPLLQLADHIVSYAKPGAVVGI  193 (237)
Q Consensus       150 ~~~~~~~~~~~~-fD~I~~n~~~~~~~~~l~~~~~~L~~gG~lii  193 (237)
                            +....+ ||+|.+-.. ..+..++..+..++++||.++.
T Consensus       129 ------~~~~~~~~D~vtsRAv-a~L~~l~e~~~pllk~~g~~~~  166 (215)
T COG0357         129 ------FGQEKKQYDVVTSRAV-ASLNVLLELCLPLLKVGGGFLA  166 (215)
T ss_pred             ------cccccccCcEEEeehc-cchHHHHHHHHHhcccCCcchh
Confidence                  222234 999999773 3456677889999999998754

>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases

Probab=98.43  E-value=3.4e-06  Score=68.13  Aligned_cols=134  Identities=16%  Similarity=0.156  Sum_probs=79.8

Q ss_pred             HHHHHHHHhhccCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccc
Q 026513           58 KLCLLLLRRLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASM  137 (237)
Q Consensus        58 ~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~  137 (237)
                      ..+++++... +++..|.|+|||.+.++..+. . ..+|...|.-...                   -.++.+|+...  
T Consensus        61 d~iI~~l~~~-~~~~viaD~GCGdA~la~~~~-~-~~~V~SfDLva~n-------------------~~Vtacdia~v--  116 (219)
T PF05148_consen   61 DVIIEWLKKR-PKSLVIADFGCGDAKLAKAVP-N-KHKVHSFDLVAPN-------------------PRVTACDIANV--  116 (219)
T ss_dssp             HHHHHHHCTS--TTS-EEEES-TT-HHHHH---S----EEEEESS-SS-------------------TTEEES-TTS---
T ss_pred             HHHHHHHHhc-CCCEEEEECCCchHHHHHhcc-c-CceEEEeeccCCC-------------------CCEEEecCccC--
Confidence            3445555432 456799999999999986543 1 2358888886621                   12446776432  


Q ss_pred             cccccccccccccccccCCCCCCceeEEEEeCCh--HHHHHHHHHHhHhcCCCeEEEEecc--CCCCHHHHHHHHhhc-c
Q 026513          138 NERVDGVVEDLSSHKIRGISQTEKYDVVIANILL--NPLLQLADHIVSYAKPGAVVGISGI--LSEQLPHIINRYSEF-L  212 (237)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~--~~~~~~l~~~~~~L~~gG~liis~~--~~~~~~~~~~~~~~~-~  212 (237)
                                        +.+++..|++|+-..+  ..+..++.++.+.|||||.|.|..+  ..+....+...+... |
T Consensus       117 ------------------PL~~~svDv~VfcLSLMGTn~~~fi~EA~RvLK~~G~L~IAEV~SRf~~~~~F~~~~~~~GF  178 (219)
T PF05148_consen  117 ------------------PLEDESVDVAVFCLSLMGTNWPDFIREANRVLKPGGILKIAEVKSRFENVKQFIKALKKLGF  178 (219)
T ss_dssp             ------------------S--TT-EEEEEEES---SS-HHHHHHHHHHHEEEEEEEEEEEEGGG-S-HHHHHHHHHCTTE
T ss_pred             ------------------cCCCCceeEEEEEhhhhCCCcHHHHHHHHheeccCcEEEEEEecccCcCHHHHHHHHHHCCC
Confidence                              2246899999986654  4567899999999999999999766  345677777777765 7


Q ss_pred             ccceeee-cCCEEEEEEEEccc
Q 026513          213 EDILVSE-MDDWTCVSGKKKRV  233 (237)
Q Consensus       213 ~~~~~~~-~~~w~~~~~~~~~~  233 (237)
                      ....... ..-+..+.++|.+.
T Consensus       179 ~~~~~d~~n~~F~~f~F~K~~~  200 (219)
T PF05148_consen  179 KLKSKDESNKHFVLFEFKKIRK  200 (219)
T ss_dssp             EEEEEE--STTEEEEEEEE-SS
T ss_pred             eEEecccCCCeEEEEEEEEcCc
Confidence            6665443 34477788887654

; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.

>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins

Probab=98.42  E-value=1.8e-05  Score=64.41  Aligned_cols=135  Identities=15%  Similarity=0.174  Sum_probs=90.0

Q ss_pred             EEEEcCcchHHHHHHHHhCC-CeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccccccccc
Q 026513           74 FLDYGTGSGILGIAAIKFGA-AMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDLSSHK  152 (237)
Q Consensus        74 vLDlG~G~G~~~~~la~~~~-~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~  152 (237)
                      |.|+||--|+++++|.+.+. .+++++|+++..++.|++++...++.+   ++++..+|.++                  
T Consensus         1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~---~i~~rlgdGL~------------------   59 (205)
T PF04816_consen    1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLED---RIEVRLGDGLE------------------   59 (205)
T ss_dssp             EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TT---TEEEEE-SGGG------------------
T ss_pred             CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcc---cEEEEECCccc------------------
Confidence            68999999999999998764 569999999999999999999999887   58888999764                  


Q ss_pred             ccCCCCCCceeEEEE-eCChHHHHHHHHHHhHhcCCCeEEEEeccCCCCHHHHHHHHhhc-ccccee--eec-CC-EEEE
Q 026513          153 IRGISQTEKYDVVIA-NILLNPLLQLADHIVSYAKPGAVVGISGILSEQLPHIINRYSEF-LEDILV--SEM-DD-WTCV  226 (237)
Q Consensus       153 ~~~~~~~~~fD~I~~-n~~~~~~~~~l~~~~~~L~~gG~liis~~~~~~~~~~~~~~~~~-~~~~~~--~~~-~~-w~~~  226 (237)
                        .+.+.+..|.|+. .+.-..+.+++......++....+++...  .....+...+..+ |..+..  ... +. +..+
T Consensus        60 --~l~~~e~~d~ivIAGMGG~lI~~ILe~~~~~~~~~~~lILqP~--~~~~~LR~~L~~~gf~I~~E~lv~e~~~~YeIi  135 (205)
T PF04816_consen   60 --VLKPGEDVDTIVIAGMGGELIIEILEAGPEKLSSAKRLILQPN--THAYELRRWLYENGFEIIDEDLVEENGRFYEII  135 (205)
T ss_dssp             --G--GGG---EEEEEEE-HHHHHHHHHHTGGGGTT--EEEEEES--S-HHHHHHHHHHTTEEEEEEEEEEETTEEEEEE
T ss_pred             --ccCCCCCCCEEEEecCCHHHHHHHHHhhHHHhccCCeEEEeCC--CChHHHHHHHHHCCCEEEEeEEEeECCEEEEEE
Confidence              2333334677765 55566778899988888888778888653  4556666666655 654432  233 33 3335


Q ss_pred             EEEEccc
Q 026513          227 SGKKKRV  233 (237)
Q Consensus       227 ~~~~~~~  233 (237)
                      .+.+...
T Consensus       136 ~~~~~~~  142 (205)
T PF04816_consen  136 VAERGEE  142 (205)
T ss_dssp             EEEESSS
T ss_pred             EEEeCCC
Confidence            5555443

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.

>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family

Probab=98.41  E-value=1.2e-05  Score=69.67  Aligned_cols=127  Identities=9%  Similarity=0.061  Sum_probs=83.0

Q ss_pred             hccCCCeEEEEcCcchHHHHHHHH----h-CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccc
Q 026513           67 LIKGGELFLDYGTGSGILGIAAIK----F-GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERV  141 (237)
Q Consensus        67 ~~~~~~~vLDlG~G~G~~~~~la~----~-~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~  141 (237)
                      .+.++..++|+|||+|.-+..+..    . ....++++|+|..+++.+.+++.....+  .+.+.-+.+|..++.-    
T Consensus        73 ~i~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p--~l~v~~l~gdy~~~l~----  146 (319)
T TIGR03439        73 SIPSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFS--HVRCAGLLGTYDDGLA----  146 (319)
T ss_pred             hcCCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCC--CeEEEEEEecHHHHHh----
Confidence            456788999999999987665542    1 2356999999999999999888733332  2346668888764210    


Q ss_pred             cccccccccccccCCCCCCceeEEEE------eCChHHHHHHHHHHhH-hcCCCeEEEEeccCCCCHHHHHHHHh
Q 026513          142 DGVVEDLSSHKIRGISQTEKYDVVIA------NILLNPLLQLADHIVS-YAKPGAVVGISGILSEQLPHIINRYS  209 (237)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~fD~I~~------n~~~~~~~~~l~~~~~-~L~~gG~liis~~~~~~~~~~~~~~~  209 (237)
                           .     +..........+++.      |........++..+.+ .|+|||.++++--.......+...|.
T Consensus       147 -----~-----l~~~~~~~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLiG~D~~k~~~~l~~AY~  211 (319)
T TIGR03439       147 -----W-----LKRPENRSRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLIGLDGCKDPDKVLRAYN  211 (319)
T ss_pred             -----h-----cccccccCCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEEecCCCCCHHHHHHHhc
Confidence                 0     000001223566654      3334555678999999 99999999997545555555555553

This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).

>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]

Probab=98.37  E-value=8.6e-06  Score=71.72  Aligned_cols=119  Identities=14%  Similarity=0.058  Sum_probs=89.1

Q ss_pred             ccCCCeEEEEcCcchHHHHHHHH--hCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccc
Q 026513           68 IKGGELFLDYGTGSGILGIAAIK--FGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVV  145 (237)
Q Consensus        68 ~~~~~~vLDlG~G~G~~~~~la~--~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  145 (237)
                      +++|.||||.++-+|.-+..+|.  .....|++.|.+..-++..+.|+...|+.+    ..+...|..+++.        
T Consensus       239 Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~n----tiv~n~D~~ef~~--------  306 (460)
T KOG1122|consen  239 PQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVTN----TIVSNYDGREFPE--------  306 (460)
T ss_pred             CCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCCc----eEEEccCcccccc--------
Confidence            57899999999999988776664  456789999999999999999999999887    6666777653221        


Q ss_pred             cccccccccCCCCCCceeEEEEeCCh-------------------------HHHHHHHHHHhHhcCCCeEEEEecc--CC
Q 026513          146 EDLSSHKIRGISQTEKYDVVIANILL-------------------------NPLLQLADHIVSYAKPGAVVGISGI--LS  198 (237)
Q Consensus       146 ~~~~~~~~~~~~~~~~fD~I~~n~~~-------------------------~~~~~~l~~~~~~L~~gG~liis~~--~~  198 (237)
                               ... .++||.|+.+.|.                         +..++++..+..++++||+|+.|+.  ..
T Consensus       307 ---------~~~-~~~fDRVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCSI~~  376 (460)
T KOG1122|consen  307 ---------KEF-PGSFDRVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCSITV  376 (460)
T ss_pred             ---------ccc-CcccceeeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeeecch
Confidence                     112 2389999998871                         3346789999999999999999833  33


Q ss_pred             CCHHHHHHHH
Q 026513          199 EQLPHIINRY  208 (237)
Q Consensus       199 ~~~~~~~~~~  208 (237)
                      ++-+.+....
T Consensus       377 ~ENE~vV~ya  386 (460)
T KOG1122|consen  377 EENEAVVDYA  386 (460)
T ss_pred             hhhHHHHHHH
Confidence            3334444433

>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []

Probab=98.36  E-value=1.1e-05  Score=65.71  Aligned_cols=111  Identities=23%  Similarity=0.267  Sum_probs=63.5

Q ss_pred             ccCCCeEEEEcCcchHHHHHHH-HhCCCeEEEEeCCHHHHHHHHHHHH-------HcCCCCCcceEEeccCccccccccc
Q 026513           68 IKGGELFLDYGTGSGILGIAAI-KFGAAMSVGADIDPQAIKSAHQNAA-------LNNIGPKKMKLHLVPDRTFTASMNE  139 (237)
Q Consensus        68 ~~~~~~vLDlG~G~G~~~~~la-~~~~~~v~~vD~s~~~i~~a~~~~~-------~~~~~~~~~~v~~~~~d~~~~~~~~  139 (237)
                      +.++..++|||||.|.....++ ..+..+++|||+.+...+.|+....       ..+...  .++.+..+|+.+....+
T Consensus        40 l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~--~~v~l~~gdfl~~~~~~  117 (205)
T PF08123_consen   40 LTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRP--GKVELIHGDFLDPDFVK  117 (205)
T ss_dssp             --TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB-----EEEEECS-TTTHHHHH
T ss_pred             CCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhccc--ccceeeccCccccHhHh
Confidence            5678899999999999988776 4578889999999999888776432       223322  25777889876422110


Q ss_pred             cccccccccccccccCCCCCCceeEEEEeCCh--HHHHHHHHHHhHhcCCCeEEEEeccC
Q 026513          140 RVDGVVEDLSSHKIRGISQTEKYDVVIANILL--NPLLQLADHIVSYAKPGAVVGISGIL  197 (237)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~--~~~~~~l~~~~~~L~~gG~liis~~~  197 (237)
                                     ..  -...|+|++|...  ..+...+......||+|.+++...-+
T Consensus       118 ---------------~~--~s~AdvVf~Nn~~F~~~l~~~L~~~~~~lk~G~~IIs~~~~  160 (205)
T PF08123_consen  118 ---------------DI--WSDADVVFVNNTCFDPDLNLALAELLLELKPGARIISTKPF  160 (205)
T ss_dssp             ---------------HH--GHC-SEEEE--TTT-HHHHHHHHHHHTTS-TT-EEEESS-S
T ss_pred             ---------------hh--hcCCCEEEEeccccCHHHHHHHHHHHhcCCCCCEEEECCCc
Confidence                           00  1357999997653  23333456666788999888764333

H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....

>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]

Probab=98.31  E-value=6.2e-06  Score=65.22  Aligned_cols=123  Identities=12%  Similarity=0.115  Sum_probs=85.9

Q ss_pred             ccCCCeEEEEcCcchHHHHHHHHh--CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccC-cccccccccccccc
Q 026513           68 IKGGELFLDYGTGSGILGIAAIKF--GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPD-RTFTASMNERVDGV  144 (237)
Q Consensus        68 ~~~~~~vLDlG~G~G~~~~~la~~--~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~-d~~~~~~~~~~~~~  144 (237)
                      +.|+.+|||+||-+|..+..+.+.  +...|.|+|+-.-.           ++..    +.++++ |+.++..--     
T Consensus        67 l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~~-----------p~~G----a~~i~~~dvtdp~~~~-----  126 (232)
T KOG4589|consen   67 LRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHIE-----------PPEG----ATIIQGNDVTDPETYR-----  126 (232)
T ss_pred             cCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeecc-----------CCCC----cccccccccCCHHHHH-----
Confidence            578999999999999999888764  66789999986521           2221    444555 555432110     


Q ss_pred             ccccccccccCCCCCCceeEEEEeCC--------hHHHH------HHHHHHhHhcCCCeEEEEeccCCCCHHHHHHHHhh
Q 026513          145 VEDLSSHKIRGISQTEKYDVVIANIL--------LNPLL------QLADHIVSYAKPGAVVGISGILSEQLPHIINRYSE  210 (237)
Q Consensus       145 ~~~~~~~~~~~~~~~~~fD~I~~n~~--------~~~~~------~~l~~~~~~L~~gG~liis~~~~~~~~~~~~~~~~  210 (237)
                             .+.+..++.+.|+|++++.        +++..      ..+--...++.|+|.++.--+...+...+...+..
T Consensus       127 -------ki~e~lp~r~VdvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w~g~e~~~l~r~l~~  199 (232)
T KOG4589|consen  127 -------KIFEALPNRPVDVVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKLWDGSEEALLQRRLQA  199 (232)
T ss_pred             -------HHHHhCCCCcccEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEecCCchHHHHHHHHH
Confidence                   1112235789999999875        23332      23444567889999999998888899999999998


Q ss_pred             cccccee
Q 026513          211 FLEDILV  217 (237)
Q Consensus       211 ~~~~~~~  217 (237)
                      +|+.+..
T Consensus       200 ~f~~Vk~  206 (232)
T KOG4589|consen  200 VFTNVKK  206 (232)
T ss_pred             HhhhcEe
Confidence            8877765

>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]

Probab=98.30  E-value=1.5e-05  Score=66.52  Aligned_cols=103  Identities=17%  Similarity=0.137  Sum_probs=79.5

Q ss_pred             ccCCCeEEEEcCcchHHHHHHHHh--CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccc
Q 026513           68 IKGGELFLDYGTGSGILGIAAIKF--GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVV  145 (237)
Q Consensus        68 ~~~~~~vLDlG~G~G~~~~~la~~--~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  145 (237)
                      +.||.+|+|-|+|+|.++.++++.  +..+++..|+...-.+.|++-.+..++..   .+.+..-|++.....       
T Consensus       103 i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~---~vt~~hrDVc~~GF~-------  172 (314)
T KOG2915|consen  103 IRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGD---NVTVTHRDVCGSGFL-------  172 (314)
T ss_pred             CCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCc---ceEEEEeecccCCcc-------
Confidence            579999999999999999999875  66889999999999999999999999876   477777777642211       


Q ss_pred             cccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEE
Q 026513          146 EDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGI  193 (237)
Q Consensus       146 ~~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~lii  193 (237)
                                 ....++|.|+.+.|..+.  .+..+...|+.+|.-+.
T Consensus       173 -----------~ks~~aDaVFLDlPaPw~--AiPha~~~lk~~g~r~c  207 (314)
T KOG2915|consen  173 -----------IKSLKADAVFLDLPAPWE--AIPHAAKILKDEGGRLC  207 (314)
T ss_pred             -----------ccccccceEEEcCCChhh--hhhhhHHHhhhcCceEE
Confidence                       114689999999986653  33445557787775433

>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.30  E-value=6.6e-07  Score=75.02  Aligned_cols=112  Identities=21%  Similarity=0.251  Sum_probs=69.6

Q ss_pred             CCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcce-------------------------
Q 026513           70 GGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMK-------------------------  124 (237)
Q Consensus        70 ~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~-------------------------  124 (237)
                      +|.++||+|||+-.+....+..-+.+|+..|+++..++..++-++..+ ..++..                         
T Consensus        56 ~g~~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~~-a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~~  134 (256)
T PF01234_consen   56 KGETLLDIGSGPTIYQLLSACEWFEEIVLSDYSEQNREELEKWLRKEG-AFDWSPFWKYVCELEGKREKWEEKEEKLRRA  134 (256)
T ss_dssp             -EEEEEEES-TT--GGGTTGGGTEEEEEEEESSHHHHHHHHHHHTT-T-S--THHHHHHHHHHTTSSSGHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHhhhhHHHhhcceEEeeccHhhHHHHHHHHCCCC-CCCccHHHHHHHhccCCcchhhhHHHHHHHh
Confidence            467899999999877665555557889999999999998887665542 111111                         


Q ss_pred             E-EeccCccccccccccccccccccccccccC-CCCCCceeEEEEeCCh-------HHHHHHHHHHhHhcCCCeEEEEec
Q 026513          125 L-HLVPDRTFTASMNERVDGVVEDLSSHKIRG-ISQTEKYDVVIANILL-------NPLLQLADHIVSYAKPGAVVGISG  195 (237)
Q Consensus       125 v-~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~fD~I~~n~~~-------~~~~~~l~~~~~~L~~gG~liis~  195 (237)
                      + .++..|+..               .+.+.. ....++||+|++..-+       ..+...++++.++|||||+|++.+
T Consensus       135 Vk~Vv~cDV~~---------------~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~  199 (256)
T PF01234_consen  135 VKQVVPCDVTQ---------------PNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAG  199 (256)
T ss_dssp             EEEEEE--TTS---------------SSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred             hceEEEeeccC---------------CCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence            1 122333322               111211 1112369999987764       445678999999999999999965


Q ss_pred             cC
Q 026513          196 IL  197 (237)
Q Consensus       196 ~~  197 (237)
                      .+
T Consensus       200 ~l  201 (256)
T PF01234_consen  200 VL  201 (256)
T ss_dssp             ES
T ss_pred             Ec
Confidence            54

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....

>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=98.25  E-value=5.7e-05  Score=61.39  Aligned_cols=144  Identities=17%  Similarity=0.154  Sum_probs=103.0

Q ss_pred             HHHHhhccCCCeEEEEcCcchHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccc
Q 026513           62 LLLRRLIKGGELFLDYGTGSGILGIAAIKF-GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNER  140 (237)
Q Consensus        62 ~~l~~~~~~~~~vLDlG~G~G~~~~~la~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~  140 (237)
                      ..+.++.+.+.++.|+||--++++.++.+. ....+++.|+++..++.|.+++..+++..   ++.+..+|.+.      
T Consensus         8 ~~va~~V~~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~---~i~vr~~dgl~------   78 (226)
T COG2384           8 TTVANLVKQGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSE---RIDVRLGDGLA------   78 (226)
T ss_pred             HHHHHHHHcCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcc---eEEEeccCCcc------
Confidence            344455677888999999999999999865 56789999999999999999999999886   57777888753      


Q ss_pred             ccccccccccccccCCCCCCceeEEEEeCC-hHHHHHHHHHHhHhcCCCeEEEEeccCCCCHHHHHHHHhhc-cccc--e
Q 026513          141 VDGVVEDLSSHKIRGISQTEKYDVVIANIL-LNPLLQLADHIVSYAKPGAVVGISGILSEQLPHIINRYSEF-LEDI--L  216 (237)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~-~~~~~~~l~~~~~~L~~gG~liis~~~~~~~~~~~~~~~~~-~~~~--~  216 (237)
                                    .+..+..+|+|+...+ -..+.+++..-...|+.=-++++..  .....++...+..+ |..+  .
T Consensus        79 --------------~l~~~d~~d~ivIAGMGG~lI~~ILee~~~~l~~~~rlILQP--n~~~~~LR~~L~~~~~~I~~E~  142 (226)
T COG2384          79 --------------VLELEDEIDVIVIAGMGGTLIREILEEGKEKLKGVERLILQP--NIHTYELREWLSANSYEIKAET  142 (226)
T ss_pred             --------------ccCccCCcCEEEEeCCcHHHHHHHHHHhhhhhcCcceEEECC--CCCHHHHHHHHHhCCceeeeee
Confidence                          3344567898876554 5666888888888887666777753  23335555555544 4433  3


Q ss_pred             eeecCCEEE--EEEEE
Q 026513          217 VSEMDDWTC--VSGKK  230 (237)
Q Consensus       217 ~~~~~~w~~--~~~~~  230 (237)
                      .....+|..  ++..+
T Consensus       143 ileE~~kiYEIlv~e~  158 (226)
T COG2384         143 ILEEDGKIYEILVVEK  158 (226)
T ss_pred             eecccCeEEEEEEEec
Confidence            334445443  44444

>TIGR00006 S-adenosyl-methyltransferase MraW

Probab=98.24  E-value=3.3e-05  Score=66.42  Aligned_cols=61  Identities=28%  Similarity=0.341  Sum_probs=50.4

Q ss_pred             ccCCCeEEEEcCcchHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccc
Q 026513           68 IKGGELFLDYGTGSGILGIAAIKF-GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTF  133 (237)
Q Consensus        68 ~~~~~~vLDlG~G~G~~~~~la~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~  133 (237)
                      +.+|..++|.-+|.|..+..++.. +..+|+|+|.++.+++.|++.+...+  .   ++.+++++..
T Consensus        18 ~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~~--~---R~~~i~~nF~   79 (305)
T TIGR00006        18 IKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDFE--G---RVVLIHDNFA   79 (305)
T ss_pred             cCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhcC--C---cEEEEeCCHH
Confidence            357789999999999999988864 45889999999999999999886542  2   4788888875

Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.

>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]

Probab=98.18  E-value=2.1e-05  Score=65.30  Aligned_cols=121  Identities=13%  Similarity=0.119  Sum_probs=81.2

Q ss_pred             cCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccccc
Q 026513           69 KGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDL  148 (237)
Q Consensus        69 ~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~  148 (237)
                      +....|.|+|||-+-++.    .-...|+..|+-+.              .     -.++.+|+.+              
T Consensus       179 ~~~~vIaD~GCGEakiA~----~~~~kV~SfDL~a~--------------~-----~~V~~cDm~~--------------  221 (325)
T KOG3045|consen  179 PKNIVIADFGCGEAKIAS----SERHKVHSFDLVAV--------------N-----ERVIACDMRN--------------  221 (325)
T ss_pred             cCceEEEecccchhhhhh----ccccceeeeeeecC--------------C-----CceeeccccC--------------
Confidence            345689999999998765    22345788887541              1     2355677664              


Q ss_pred             ccccccCCCCCCceeEEEEeCCh--HHHHHHHHHHhHhcCCCeEEEEeccC--CCCHHHHHHHHhhc-cccceeee-cCC
Q 026513          149 SSHKIRGISQTEKYDVVIANILL--NPLLQLADHIVSYAKPGAVVGISGIL--SEQLPHIINRYSEF-LEDILVSE-MDD  222 (237)
Q Consensus       149 ~~~~~~~~~~~~~fD~I~~n~~~--~~~~~~l~~~~~~L~~gG~liis~~~--~~~~~~~~~~~~~~-~~~~~~~~-~~~  222 (237)
                            .+..+++.|++++-..+  ..+..++.++.+.|++||.++|..+.  ..+...+...+... |....... ...
T Consensus       222 ------vPl~d~svDvaV~CLSLMgtn~~df~kEa~RiLk~gG~l~IAEv~SRf~dv~~f~r~l~~lGF~~~~~d~~n~~  295 (325)
T KOG3045|consen  222 ------VPLEDESVDVAVFCLSLMGTNLADFIKEANRILKPGGLLYIAEVKSRFSDVKGFVRALTKLGFDVKHKDVSNKY  295 (325)
T ss_pred             ------CcCccCcccEEEeeHhhhcccHHHHHHHHHHHhccCceEEEEehhhhcccHHHHHHHHHHcCCeeeehhhhcce
Confidence                  22347899999875543  45678999999999999999998774  45566677666654 65554443 334


Q ss_pred             EEEEEEEEcc
Q 026513          223 WTCVSGKKKR  232 (237)
Q Consensus       223 w~~~~~~~~~  232 (237)
                      +..+.|+|.+
T Consensus       296 F~lfefkK~~  305 (325)
T KOG3045|consen  296 FTLFEFKKTP  305 (325)
T ss_pred             EEEEEEecCC
Confidence            5666666644

>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]

Probab=98.16  E-value=4.1e-05  Score=62.50  Aligned_cols=104  Identities=20%  Similarity=0.254  Sum_probs=72.4

Q ss_pred             ccCCCeEEEEcCcchHHHHHHHHh-C-CCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccc
Q 026513           68 IKGGELFLDYGTGSGILGIAAIKF-G-AAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVV  145 (237)
Q Consensus        68 ~~~~~~vLDlG~G~G~~~~~la~~-~-~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  145 (237)
                      +++|.+||-+|+.+|+..-.++.. + ...|+|+|+|+...+..-.-++...      .+-.+-.|+..+.         
T Consensus        71 ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R~------NIiPIl~DAr~P~---------  135 (229)
T PF01269_consen   71 IKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKRP------NIIPILEDARHPE---------  135 (229)
T ss_dssp             --TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHST------TEEEEES-TTSGG---------
T ss_pred             CCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccCC------ceeeeeccCCChH---------
Confidence            678999999999999998888864 4 6789999999988776655554433      2777788876432         


Q ss_pred             cccccccccCCCCCCceeEEEEeCChHHHHH-HHHHHhHhcCCCeEEEEe
Q 026513          146 EDLSSHKIRGISQTEKYDVVIANILLNPLLQ-LADHIVSYAKPGAVVGIS  194 (237)
Q Consensus       146 ~~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~-~l~~~~~~L~~gG~liis  194 (237)
                            .-+.+  -+..|+|+++..-....+ +..++...||+||+++++
T Consensus       136 ------~Y~~l--v~~VDvI~~DVaQp~Qa~I~~~Na~~fLk~gG~~~i~  177 (229)
T PF01269_consen  136 ------KYRML--VEMVDVIFQDVAQPDQARIAALNARHFLKPGGHLIIS  177 (229)
T ss_dssp             ------GGTTT--S--EEEEEEE-SSTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             ------Hhhcc--cccccEEEecCCChHHHHHHHHHHHhhccCCcEEEEE
Confidence                  11111  358999999987555544 467788899999999985

It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....

>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional

Probab=98.14  E-value=9.8e-06  Score=70.25  Aligned_cols=87  Identities=16%  Similarity=0.297  Sum_probs=62.1

Q ss_pred             ccCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccc
Q 026513           68 IKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVED  147 (237)
Q Consensus        68 ~~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  147 (237)
                      +.+|.++||+||++|.++..+.+.|. +|++||..+-.     ..+...+      ++....+|.+.             
T Consensus       209 ~~~g~~vlDLGAsPGGWT~~L~~rG~-~V~AVD~g~l~-----~~L~~~~------~V~h~~~d~fr-------------  263 (357)
T PRK11760        209 LAPGMRAVDLGAAPGGWTYQLVRRGM-FVTAVDNGPMA-----QSLMDTG------QVEHLRADGFK-------------  263 (357)
T ss_pred             cCCCCEEEEeCCCCcHHHHHHHHcCC-EEEEEechhcC-----HhhhCCC------CEEEEeccCcc-------------
Confidence            36799999999999999999999977 79999966521     2222222      37777887652             


Q ss_pred             cccccccCCCC-CCceeEEEEeCChHHHHHHHHHHhHhcCCC
Q 026513          148 LSSHKIRGISQ-TEKYDVVIANILLNPLLQLADHIVSYAKPG  188 (237)
Q Consensus       148 ~~~~~~~~~~~-~~~fD~I~~n~~~~~~~~~l~~~~~~L~~g  188 (237)
                              +.+ .+.+|+++|+....+. .++..+..+|..|
T Consensus       264 --------~~p~~~~vDwvVcDmve~P~-rva~lm~~Wl~~g  296 (357)
T PRK11760        264 --------FRPPRKNVDWLVCDMVEKPA-RVAELMAQWLVNG  296 (357)
T ss_pred             --------cCCCCCCCCEEEEecccCHH-HHHHHHHHHHhcC
Confidence                    222 5689999999976554 4456666666555

>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised

Probab=98.13  E-value=0.0002  Score=59.14  Aligned_cols=102  Identities=14%  Similarity=0.050  Sum_probs=62.8

Q ss_pred             cCCCeEEEEcCcchHHHHHHHH-hCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccc
Q 026513           69 KGGELFLDYGTGSGILGIAAIK-FGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVED  147 (237)
Q Consensus        69 ~~~~~vLDlG~G~G~~~~~la~-~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  147 (237)
                      -.|++||=+|=.. ..+++++. ...++|+.+|++++.++..++.++..++.     ++....|+.++..+         
T Consensus        43 L~gk~il~lGDDD-LtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl~-----i~~~~~DlR~~LP~---------  107 (243)
T PF01861_consen   43 LEGKRILFLGDDD-LTSLALALTGLPKRITVVDIDERLLDFINRVAEEEGLP-----IEAVHYDLRDPLPE---------  107 (243)
T ss_dssp             STT-EEEEES-TT--HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT-------EEEE---TTS---T---------
T ss_pred             ccCCEEEEEcCCc-HHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCCc-----eEEEEecccccCCH---------
Confidence            4688999999443 34444443 34678999999999999999999999876     88888998754321         


Q ss_pred             cccccccCCCCCCceeEEEEeCCh--HHHHHHHHHHhHhcCCCe-EEEEe
Q 026513          148 LSSHKIRGISQTEKYDVVIANILL--NPLLQLADHIVSYAKPGA-VVGIS  194 (237)
Q Consensus       148 ~~~~~~~~~~~~~~fD~I~~n~~~--~~~~~~l~~~~~~L~~gG-~liis  194 (237)
                             .+  .++||+++.+||.  ..+.-++.+....|+..| ..|++
T Consensus       108 -------~~--~~~fD~f~TDPPyT~~G~~LFlsRgi~~Lk~~g~~gy~~  148 (243)
T PF01861_consen  108 -------EL--RGKFDVFFTDPPYTPEGLKLFLSRGIEALKGEGCAGYFG  148 (243)
T ss_dssp             -------TT--SS-BSEEEE---SSHHHHHHHHHHHHHTB-STT-EEEEE
T ss_pred             -------HH--hcCCCEEEeCCCCCHHHHHHHHHHHHHHhCCCCceEEEE
Confidence                   11  4799999999995  566778899999998777 55554

All the members are 350-400 amino acids long.; PDB: 2QM3_A.

>KOG2730 consensus Methylase [General function prediction only]

Probab=98.13  E-value=3.7e-06  Score=68.09  Aligned_cols=81  Identities=22%  Similarity=0.267  Sum_probs=64.9

Q ss_pred             CCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccccc
Q 026513           70 GGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDLS  149 (237)
Q Consensus        70 ~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~  149 (237)
                      ...+|+|..||.|+.++..+.. ...|+++|+||.-+..|+.|++-.|+.+   ++.|++||+++.         ..-+ 
T Consensus        94 ~~~~iidaf~g~gGntiqfa~~-~~~VisIdiDPikIa~AkhNaeiYGI~~---rItFI~GD~ld~---------~~~l-  159 (263)
T KOG2730|consen   94 NAEVIVDAFCGVGGNTIQFALQ-GPYVIAIDIDPVKIACARHNAEVYGVPD---RITFICGDFLDL---------ASKL-  159 (263)
T ss_pred             CcchhhhhhhcCCchHHHHHHh-CCeEEEEeccHHHHHHHhccceeecCCc---eeEEEechHHHH---------HHHH-
Confidence            3468999999999999999888 4559999999999999999999999987   799999998731         1111 


Q ss_pred             cccccCCCCCCceeEEEEeCC
Q 026513          150 SHKIRGISQTEKYDVVIANIL  170 (237)
Q Consensus       150 ~~~~~~~~~~~~fD~I~~n~~  170 (237)
                           .+ ....+|+|+..||
T Consensus       160 -----q~-~K~~~~~vf~spp  174 (263)
T KOG2730|consen  160 -----KA-DKIKYDCVFLSPP  174 (263)
T ss_pred             -----hh-hhheeeeeecCCC
Confidence                 11 1245889998877

>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D

Probab=98.11  E-value=1.7e-06  Score=62.83  Aligned_cols=99  Identities=14%  Similarity=0.180  Sum_probs=43.7

Q ss_pred             EEEcCcchHHHHHHHHh----CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccccccc
Q 026513           75 LDYGTGSGILGIAAIKF----GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDLSS  150 (237)
Q Consensus        75 LDlG~G~G~~~~~la~~----~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~  150 (237)
                      ||+|+..|..+..+++.    +..+++++|..+. .+.+++.++..++..   +++++.++..+.         ++    
T Consensus         1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~~~~~---~~~~~~g~s~~~---------l~----   63 (106)
T PF13578_consen    1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKAGLSD---RVEFIQGDSPDF---------LP----   63 (106)
T ss_dssp             --------------------------EEEESS-------------GGG-B---TEEEEES-THHH---------HH----
T ss_pred             CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhhcCCCC---eEEEEEcCcHHH---------HH----
Confidence            68999999888776642    2247999999995 334444444444443   388888887531         11    


Q ss_pred             ccccCCCCCCceeEEEEeCC--hHHHHHHHHHHhHhcCCCeEEEEec
Q 026513          151 HKIRGISQTEKYDVVIANIL--LNPLLQLADHIVSYAKPGAVVGISG  195 (237)
Q Consensus       151 ~~~~~~~~~~~fD~I~~n~~--~~~~~~~l~~~~~~L~~gG~liis~  195 (237)
                          .+. .+++|+++.+..  .......+..+.+.|+|||.+++.+
T Consensus        64 ----~~~-~~~~dli~iDg~H~~~~~~~dl~~~~~~l~~ggviv~dD  105 (106)
T PF13578_consen   64 ----SLP-DGPIDLIFIDGDHSYEAVLRDLENALPRLAPGGVIVFDD  105 (106)
T ss_dssp             ----HHH-H--EEEEEEES---HHHHHHHHHHHGGGEEEEEEEEEE-
T ss_pred             ----HcC-CCCEEEEEECCCCCHHHHHHHHHHHHHHcCCCeEEEEeC
Confidence                111 469999999985  4555667889999999999999864

>PRK10742 putative methyltransferase; Provisional

Probab=98.04  E-value=1.7e-05  Score=65.97  Aligned_cols=86  Identities=20%  Similarity=0.168  Sum_probs=64.3

Q ss_pred             ccCCC--eEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCC---CCc--ceEEeccCcccccccccc
Q 026513           68 IKGGE--LFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIG---PKK--MKLHLVPDRTFTASMNER  140 (237)
Q Consensus        68 ~~~~~--~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~---~~~--~~v~~~~~d~~~~~~~~~  140 (237)
                      +++|.  +|||+.+|+|..+..++..|+. |+++|-++.+....++++......   ...  -+++++.+|..+..    
T Consensus        84 lk~g~~p~VLD~TAGlG~Da~~las~G~~-V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L----  158 (250)
T PRK10742         84 IKGDYLPDVVDATAGLGRDAFVLASVGCR-VRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTAL----  158 (250)
T ss_pred             CCCCCCCEEEECCCCccHHHHHHHHcCCE-EEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHHH----
Confidence            35666  8999999999999999999777 999999999999999988763110   010  14778888876321    


Q ss_pred             ccccccccccccccCCCCCCceeEEEEeCChHH
Q 026513          141 VDGVVEDLSSHKIRGISQTEKYDVVIANILLNP  173 (237)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~~~  173 (237)
                                   ...  ...||+|+++|++.+
T Consensus       159 -------------~~~--~~~fDVVYlDPMfp~  176 (250)
T PRK10742        159 -------------TDI--TPRPQVVYLDPMFPH  176 (250)
T ss_pred             -------------hhC--CCCCcEEEECCCCCC
Confidence                         111  347999999999754

>TIGR01444 fkbM_fam methyltransferase, FkbM family

Probab=98.01  E-value=2.1e-05  Score=59.98  Aligned_cols=57  Identities=21%  Similarity=0.245  Sum_probs=47.0

Q ss_pred             eEEEEcCcchHHHHHHHHhCC-CeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccc
Q 026513           73 LFLDYGTGSGILGIAAIKFGA-AMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTF  133 (237)
Q Consensus        73 ~vLDlG~G~G~~~~~la~~~~-~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~  133 (237)
                      +++|+|||.|.++..+++.+. .+++++|.++.+.+.+++++..+++.+    +.+++..+.
T Consensus         1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~~~----v~~~~~al~   58 (143)
T TIGR01444         1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNLPN----VVLLNAAVG   58 (143)
T ss_pred             CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCCCc----EEEEEeeee
Confidence            489999999999999887643 489999999999999999999888764    555555443

Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.

>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases

Probab=98.01  E-value=0.00018  Score=54.77  Aligned_cols=112  Identities=15%  Similarity=0.179  Sum_probs=69.4

Q ss_pred             eEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccccccccccCCCCCCceeEEEEeCCh---
Q 026513           95 MSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILL---  171 (237)
Q Consensus        95 ~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~---  171 (237)
                      +|+|+||-+++++.+++.+...++.+   ++.++..+-.                  .+....+.+++|+++.|..+   
T Consensus         1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~---~v~li~~sHe------------------~l~~~i~~~~v~~~iFNLGYLPg   59 (140)
T PF06962_consen    1 KVYAFDIQEEAIENTRERLEEAGLED---RVTLILDSHE------------------NLDEYIPEGPVDAAIFNLGYLPG   59 (140)
T ss_dssp             EEEEEES-HHHHHHHHHHHHHTT-GS---GEEEEES-GG------------------GGGGT--S--EEEEEEEESB-CT
T ss_pred             CEEEEECHHHHHHHHHHHHHhcCCCC---cEEEEECCHH------------------HHHhhCccCCcCEEEEECCcCCC
Confidence            58999999999999999999998765   5777776543                  23343333689999998753   


Q ss_pred             ---------HHHHHHHHHHhHhcCCCeEEEEeccCCCCHH-HHHHHHhhccccceeeecCCEEEEEEEE
Q 026513          172 ---------NPLLQLADHIVSYAKPGAVVGISGILSEQLP-HIINRYSEFLEDILVSEMDDWTCVSGKK  230 (237)
Q Consensus       172 ---------~~~~~~l~~~~~~L~~gG~liis~~~~~~~~-~~~~~~~~~~~~~~~~~~~~w~~~~~~~  230 (237)
                               ...-..++.+.++|+|||.+.+..+...... +-.+.+..+.   +......|..+..+-
T Consensus        60 gDk~i~T~~~TTl~Al~~al~lL~~gG~i~iv~Y~GH~gG~eE~~av~~~~---~~L~~~~~~V~~~~~  125 (140)
T PF06962_consen   60 GDKSITTKPETTLKALEAALELLKPGGIITIVVYPGHPGGKEESEAVEEFL---ASLDQKEFNVLKYQF  125 (140)
T ss_dssp             S-TTSB--HHHHHHHHHHHHHHEEEEEEEEEEE--STCHHHHHHHHHHHHH---HTS-TTTEEEEEEEE
T ss_pred             CCCCCCcCcHHHHHHHHHHHHhhccCCEEEEEEeCCCCCCHHHHHHHHHHH---HhCCcceEEEEEEEc
Confidence                     2223568899999999999999888754422 2222222221   112455677666554

; PDB: 3EEY_H 3LBY_A 3MTI_A.

>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases

Probab=98.00  E-value=2e-05  Score=71.17  Aligned_cols=123  Identities=18%  Similarity=0.158  Sum_probs=70.8

Q ss_pred             ccCCCCchhHHHHHHHHHhhccCC--CeEEEEcCcchHHHHHHHHhCCCeE--EEEeCCHHHHHHHHHHHHHcCCCCCcc
Q 026513           48 AFGSGEHATTKLCLLLLRRLIKGG--ELFLDYGTGSGILGIAAIKFGAAMS--VGADIDPQAIKSAHQNAALNNIGPKKM  123 (237)
Q Consensus        48 ~f~~g~~~~~~~~~~~l~~~~~~~--~~vLDlG~G~G~~~~~la~~~~~~v--~~vD~s~~~i~~a~~~~~~~~~~~~~~  123 (237)
                      .|-.|...+.+.+.+.+......|  ..+||+|||+|+|+.++..++...+  ..-|..+..+..|.+    .|+..   
T Consensus        93 ~F~~Ga~~Yid~i~~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~r~V~t~s~a~~d~~~~qvqfale----RGvpa---  165 (506)
T PF03141_consen   93 MFPHGADHYIDQIAEMIPLIKWGGGIRTALDVGCGVASFGAYLLERNVTTMSFAPNDEHEAQVQFALE----RGVPA---  165 (506)
T ss_pred             cccCCHHHHHHHHHHHhhccccCCceEEEEeccceeehhHHHHhhCCceEEEcccccCCchhhhhhhh----cCcch---
Confidence            344444444444444443211222  3699999999999999988754322  223444444444432    24431   


Q ss_pred             eEEeccCccccccccccccccccccccccccCCCCCCceeEEEEeCCh---HHH-HHHHHHHhHhcCCCeEEEEeccCCC
Q 026513          124 KLHLVPDRTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILL---NPL-LQLADHIVSYAKPGAVVGISGILSE  199 (237)
Q Consensus       124 ~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~---~~~-~~~l~~~~~~L~~gG~liis~~~~~  199 (237)
                       +.-+-+.                     .+.+.++..||+|-|.--+   +.. .-++-.+-++|+|||++++|+-...
T Consensus       166 -~~~~~~s---------------------~rLPfp~~~fDmvHcsrc~i~W~~~~g~~l~evdRvLRpGGyfv~S~ppv~  223 (506)
T PF03141_consen  166 -MIGVLGS---------------------QRLPFPSNAFDMVHCSRCLIPWHPNDGFLLFEVDRVLRPGGYFVLSGPPVY  223 (506)
T ss_pred             -hhhhhcc---------------------ccccCCccchhhhhcccccccchhcccceeehhhhhhccCceEEecCCccc
Confidence             1101111                     1245568899999885433   111 2356778999999999999966433

; GO: 0008168 methyltransferase activity

>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2

Probab=97.96  E-value=5.6e-05  Score=64.11  Aligned_cols=100  Identities=23%  Similarity=0.346  Sum_probs=64.2

Q ss_pred             CeEEEEcCcch-HHHHHHHH-hC-CCeEEEEeCCHHHHHHHHHHHH-HcCCCCCcceEEeccCccccccccccccccccc
Q 026513           72 ELFLDYGTGSG-ILGIAAIK-FG-AAMSVGADIDPQAIKSAHQNAA-LNNIGPKKMKLHLVPDRTFTASMNERVDGVVED  147 (237)
Q Consensus        72 ~~vLDlG~G~G-~~~~~la~-~~-~~~v~~vD~s~~~i~~a~~~~~-~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  147 (237)
                      .+|+=||||+= ..++.+++ ++ ...|+++|+++.+++.+++-+. ..+++.   ++.|+.+|..+..           
T Consensus       122 ~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~---~m~f~~~d~~~~~-----------  187 (276)
T PF03059_consen  122 SRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSK---RMSFITADVLDVT-----------  187 (276)
T ss_dssp             -EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-S---SEEEEES-GGGG------------
T ss_pred             ceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccC---CeEEEecchhccc-----------
Confidence            49999999975 55556664 33 4679999999999999998877 445554   4788888875311           


Q ss_pred             cccccccCCCCCCceeEEEEeCChH----HHHHHHHHHhHhcCCCeEEEEe
Q 026513          148 LSSHKIRGISQTEKYDVVIANILLN----PLLQLADHIVSYAKPGAVVGIS  194 (237)
Q Consensus       148 ~~~~~~~~~~~~~~fD~I~~n~~~~----~~~~~l~~~~~~L~~gG~liis  194 (237)
                               ..-..||+|+......    .-.+++.++.+.++||..+++.
T Consensus       188 ---------~dl~~~DvV~lAalVg~~~e~K~~Il~~l~~~m~~ga~l~~R  229 (276)
T PF03059_consen  188 ---------YDLKEYDVVFLAALVGMDAEPKEEILEHLAKHMAPGARLVVR  229 (276)
T ss_dssp             ---------GG----SEEEE-TT-S----SHHHHHHHHHHHS-TTSEEEEE
T ss_pred             ---------cccccCCEEEEhhhcccccchHHHHHHHHHhhCCCCcEEEEe
Confidence                     1135899999887665    4568999999999999999984

5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.

>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=97.95  E-value=0.00024  Score=57.01  Aligned_cols=128  Identities=19%  Similarity=0.244  Sum_probs=88.8

Q ss_pred             ccCCCeEEEEcCcchHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccc
Q 026513           68 IKGGELFLDYGTGSGILGIAAIKF-GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVE  146 (237)
Q Consensus        68 ~~~~~~vLDlG~G~G~~~~~la~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  146 (237)
                      +.+|.+||=+|+.+|+..-.++.. +...++++|+|++.....-..+....      ++..+.+|+..+.          
T Consensus        74 i~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R~------Ni~PIL~DA~~P~----------  137 (231)
T COG1889          74 IKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKRP------NIIPILEDARKPE----------  137 (231)
T ss_pred             cCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhCC------CceeeecccCCcH----------
Confidence            578999999999999988888764 66789999999999876665555432      2666777776322          


Q ss_pred             ccccccccCC-CCCCceeEEEEeCChHHHHHH-HHHHhHhcCCCeEEEEe----cc-CCCCHHHHHH----HHhh-cccc
Q 026513          147 DLSSHKIRGI-SQTEKYDVVIANILLNPLLQL-ADHIVSYAKPGAVVGIS----GI-LSEQLPHIIN----RYSE-FLED  214 (237)
Q Consensus       147 ~~~~~~~~~~-~~~~~fD~I~~n~~~~~~~~~-l~~~~~~L~~gG~liis----~~-~~~~~~~~~~----~~~~-~~~~  214 (237)
                              .. ..-++.|+|+.+..-....++ ..++...|++||+++++    ++ .+.++.++..    .+.. +|+.
T Consensus       138 --------~Y~~~Ve~VDviy~DVAQp~Qa~I~~~Na~~FLk~~G~~~i~iKArSIdvT~dp~~vf~~ev~kL~~~~f~i  209 (231)
T COG1889         138 --------KYRHLVEKVDVIYQDVAQPNQAEILADNAEFFLKKGGYVVIAIKARSIDVTADPEEVFKDEVEKLEEGGFEI  209 (231)
T ss_pred             --------HhhhhcccccEEEEecCCchHHHHHHHHHHHhcccCCeEEEEEEeecccccCCHHHHHHHHHHHHHhcCcee
Confidence                    11 113579999999876555554 67789999999988774    44 3555555554    2222 3666


Q ss_pred             ceeee
Q 026513          215 ILVSE  219 (237)
Q Consensus       215 ~~~~~  219 (237)
                      +++.+
T Consensus       210 ~e~~~  214 (231)
T COG1889         210 LEVVD  214 (231)
T ss_pred             eEEec
Confidence            65543

>PF13679 Methyltransf_32: Methyltransferase domain

Probab=97.91  E-value=8.2e-05  Score=56.97  Aligned_cols=49  Identities=24%  Similarity=0.268  Sum_probs=42.9

Q ss_pred             cCCCeEEEEcCcchHHHHHHHH-----hCCCeEEEEeCCHHHHHHHHHHHHHcC
Q 026513           69 KGGELFLDYGTGSGILGIAAIK-----FGAAMSVGADIDPQAIKSAHQNAALNN  117 (237)
Q Consensus        69 ~~~~~vLDlG~G~G~~~~~la~-----~~~~~v~~vD~s~~~i~~a~~~~~~~~  117 (237)
                      .+..+|+|+|||.|+++..++.     ....+|+++|.++..++.+++..+..+
T Consensus        24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~   77 (141)
T PF13679_consen   24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLG   77 (141)
T ss_pred             CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhc
Confidence            4567999999999999999987     556789999999999999998887665

>KOG3115 consensus Methyltransferase-like protein [General function prediction only]

Probab=97.86  E-value=6.1e-05  Score=60.41  Aligned_cols=124  Identities=10%  Similarity=0.096  Sum_probs=74.5

Q ss_pred             CCeEEEEcCcchHHHHHHHH-hCCCeEEEEeCCHHHHHHHHHHHHHcCCCC--C-cceEEeccCcccccccccccccccc
Q 026513           71 GELFLDYGTGSGILGIAAIK-FGAAMSVGADIDPQAIKSAHQNAALNNIGP--K-KMKLHLVPDRTFTASMNERVDGVVE  146 (237)
Q Consensus        71 ~~~vLDlG~G~G~~~~~la~-~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~--~-~~~v~~~~~d~~~~~~~~~~~~~~~  146 (237)
                      .-.+.|||||-|.+.+.++. ++..-+.|.||-..+-++.++.+....-..  . .-.+.+...+....           
T Consensus        61 kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~-----------  129 (249)
T KOG3115|consen   61 KVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKF-----------  129 (249)
T ss_pred             cceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhh-----------
Confidence            34699999999999999995 577889999999999998888776543110  0 00133333333211           


Q ss_pred             ccccccccCCCCCCceeEEEEeCChHHH-----------HHHHHHHhHhcCCCeEEEEeccCCCCHHHHHHHHhhc
Q 026513          147 DLSSHKIRGISQTEKYDVVIANILLNPL-----------LQLADHIVSYAKPGAVVGISGILSEQLPHIINRYSEF  211 (237)
Q Consensus       147 ~~~~~~~~~~~~~~~fD~I~~n~~~~~~-----------~~~l~~~~~~L~~gG~liis~~~~~~~~~~~~~~~~~  211 (237)
                            +..++..++.+-.+.-.|-.+.           ..++.+..-+|++||.+|.+.-..+--......+..+
T Consensus       130 ------lpn~f~kgqLskmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~ytitDv~elh~wm~~~~e~h  199 (249)
T KOG3115|consen  130 ------LPNFFEKGQLSKMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYTITDVKELHEWMVKHLEEH  199 (249)
T ss_pred             ------ccchhhhcccccceeecCChhHhhhhccceeechhHHHHHHhhhhcCceEEEEeeHHHHHHHHHHHHHhC
Confidence                  1122223333333332222122           2467778889999999999755444444444444444

>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=97.85  E-value=2.1e-05  Score=64.24  Aligned_cols=88  Identities=24%  Similarity=0.320  Sum_probs=56.7

Q ss_pred             ccCCCeEEEEcCcch-HHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHc-CCCCCcceEEeccCccccccccccccccc
Q 026513           68 IKGGELFLDYGTGSG-ILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALN-NIGPKKMKLHLVPDRTFTASMNERVDGVV  145 (237)
Q Consensus        68 ~~~~~~vLDlG~G~G-~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~-~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  145 (237)
                      ..++.++||||.|.- ++.+.-.+...-+.+|.|+|+.+++.|+.++..| ++.. .+++.. +.|-. .          
T Consensus        76 ~~~~i~~LDIGvGAnCIYPliG~~eYgwrfvGseid~~sl~sA~~ii~~N~~l~~-~I~lr~-qk~~~-~----------  142 (292)
T COG3129          76 PGKNIRILDIGVGANCIYPLIGVHEYGWRFVGSEIDSQSLSSAKAIISANPGLER-AIRLRR-QKDSD-A----------  142 (292)
T ss_pred             CcCceEEEeeccCcccccccccceeecceeecCccCHHHHHHHHHHHHcCcchhh-heeEEe-ccCcc-c----------
Confidence            346678999999965 4444433333456899999999999999999988 4442 222221 11111 0          


Q ss_pred             cccccccccCC-CCCCceeEEEEeCChHHH
Q 026513          146 EDLSSHKIRGI-SQTEKYDVVIANILLNPL  174 (237)
Q Consensus       146 ~~~~~~~~~~~-~~~~~fD~I~~n~~~~~~  174 (237)
                            .+... -..+.||++.||||+|..
T Consensus       143 ------if~giig~nE~yd~tlCNPPFh~s  166 (292)
T COG3129         143 ------IFNGIIGKNERYDATLCNPPFHDS  166 (292)
T ss_pred             ------cccccccccceeeeEecCCCcchh
Confidence                  11111 225789999999998654

>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT)

Probab=97.81  E-value=0.00035  Score=59.13  Aligned_cols=57  Identities=21%  Similarity=0.128  Sum_probs=42.4

Q ss_pred             hHHHHHHHHHhhcc------CCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHH
Q 026513           56 TTKLCLLLLRRLIK------GGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNA  113 (237)
Q Consensus        56 ~~~~~~~~l~~~~~------~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~  113 (237)
                      .-..++..|....+      ...+||-.|||.|.++..+|..|.. +.|.|.|--|+=...-.+
T Consensus        36 ~~~~I~~~L~~~~p~~~~~~~~~~VLVPGsGLGRLa~Eia~~G~~-~~gnE~S~~Mll~s~fiL   98 (270)
T PF07942_consen   36 CYSPILDELESLFPPAGSDRSKIRVLVPGSGLGRLAWEIAKLGYA-VQGNEFSYFMLLASNFIL   98 (270)
T ss_pred             HHHHHHHHHHHhhcccccCCCccEEEEcCCCcchHHHHHhhccce-EEEEEchHHHHHHHHHHH
Confidence            33445555555433      2468999999999999999999774 999999999865555433

This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].

>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]

Probab=97.80  E-value=0.00043  Score=56.18  Aligned_cols=107  Identities=16%  Similarity=0.214  Sum_probs=77.8

Q ss_pred             HhhccCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccc
Q 026513           65 RRLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGV  144 (237)
Q Consensus        65 ~~~~~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~  144 (237)
                      +....+|.|||++|-|-|+..-.+-..+..+-+.+|..|..++..+......     +-++.++.+-+.+.         
T Consensus        96 ~ai~tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~e-----k~nViil~g~WeDv---------  161 (271)
T KOG1709|consen   96 EAISTKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWRE-----KENVIILEGRWEDV---------  161 (271)
T ss_pred             HHHhhCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhccccc-----ccceEEEecchHhh---------
Confidence            3345778999999999999888777665555688999999998887764322     22377777766531         


Q ss_pred             ccccccccccCCCCCCceeEEEEeCC---hHHHHHHHHHHhHhcCCCeEEEEe
Q 026513          145 VEDLSSHKIRGISQTEKYDVVIANIL---LNPLLQLADHIVSYAKPGAVVGIS  194 (237)
Q Consensus       145 ~~~~~~~~~~~~~~~~~fD~I~~n~~---~~~~~~~l~~~~~~L~~gG~liis  194 (237)
                              +..+ +++.||-|+-+.-   .+.+.++.+.+.++|||+|++-+-
T Consensus       162 --------l~~L-~d~~FDGI~yDTy~e~yEdl~~~hqh~~rLLkP~gv~Syf  205 (271)
T KOG1709|consen  162 --------LNTL-PDKHFDGIYYDTYSELYEDLRHFHQHVVRLLKPEGVFSYF  205 (271)
T ss_pred             --------hccc-cccCcceeEeechhhHHHHHHHHHHHHhhhcCCCceEEEe
Confidence                    1122 3667999998764   344457788999999999998764

>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]

Probab=97.77  E-value=0.00052  Score=51.00  Aligned_cols=101  Identities=25%  Similarity=0.444  Sum_probs=64.3

Q ss_pred             EEEEcCcchHHHHHHHHhCC--CeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccccccc
Q 026513           74 FLDYGTGSGILGIAAIKFGA--AMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDLSSH  151 (237)
Q Consensus        74 vLDlG~G~G~~~~~la~~~~--~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~  151 (237)
                      ++|+|||+|... .+.....  ..++++|+++.+++.++..........    +.+...|....                
T Consensus        52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~----------------  110 (257)
T COG0500          52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGL----VDFVVADALGG----------------  110 (257)
T ss_pred             eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCCCc----eEEEEeccccC----------------
Confidence            999999999876 4444322  378999999999998554443221110    34555554310                


Q ss_pred             cccCCCCC-CceeEEEEeCChHH--HHHHHHHHhHhcCCCeEEEEeccC
Q 026513          152 KIRGISQT-EKYDVVIANILLNP--LLQLADHIVSYAKPGAVVGISGIL  197 (237)
Q Consensus       152 ~~~~~~~~-~~fD~I~~n~~~~~--~~~~l~~~~~~L~~gG~liis~~~  197 (237)
                       ...+ .. ..||++.+....+.  ....+..+.+.++|+|.+++....
T Consensus       111 -~~~~-~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~  157 (257)
T COG0500         111 -VLPF-EDSASFDLVISLLVLHLLPPAKALRELLRVLKPGGRLVLSDLL  157 (257)
T ss_pred             -CCCC-CCCCceeEEeeeeehhcCCHHHHHHHHHHhcCCCcEEEEEecc
Confidence             0011 12 47999944443332  357789999999999999997553

>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]

Probab=97.72  E-value=0.0018  Score=55.27  Aligned_cols=73  Identities=23%  Similarity=0.192  Sum_probs=55.3

Q ss_pred             hHHHHHHHHHhh-ccCCCeEEEEcCcchHHHHHHHHh-C-CCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcc
Q 026513           56 TTKLCLLLLRRL-IKGGELFLDYGTGSGILGIAAIKF-G-AAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRT  132 (237)
Q Consensus        56 ~~~~~~~~l~~~-~~~~~~vLDlG~G~G~~~~~la~~-~-~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~  132 (237)
                      .+-++.+.+..+ ..++...+|.--|.|+.+..+... + ..+++|+|-++.+++.|++.+...+-     ++.++++++
T Consensus         8 ipVLl~E~i~~L~~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~~-----r~~~v~~~F   82 (314)
T COG0275           8 IPVLLNEVVELLAPKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFDG-----RVTLVHGNF   82 (314)
T ss_pred             cchHHHHHHHhcccCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccCC-----cEEEEeCcH
Confidence            334444444432 467789999999999999988764 3 46799999999999999999876552     477888776


Q ss_pred             c
Q 026513          133 F  133 (237)
Q Consensus       133 ~  133 (237)
                      .
T Consensus        83 ~   83 (314)
T COG0275          83 A   83 (314)
T ss_pred             H
Confidence            4

>KOG4058 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.71  E-value=0.00047  Score=52.70  Aligned_cols=103  Identities=16%  Similarity=0.189  Sum_probs=80.7

Q ss_pred             CeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccccccc
Q 026513           72 ELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDLSSH  151 (237)
Q Consensus        72 ~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~  151 (237)
                      .+.+|+|+|.|.+.+..++.|....+|+|++|-.+.+++-.+-..++..   +..|...|.+...               
T Consensus        74 GklvDlGSGDGRiVlaaar~g~~~a~GvELNpwLVaysrl~a~R~g~~k---~trf~RkdlwK~d---------------  135 (199)
T KOG4058|consen   74 GKLVDLGSGDGRIVLAAARCGLRPAVGVELNPWLVAYSRLHAWRAGCAK---STRFRRKDLWKVD---------------  135 (199)
T ss_pred             CcEEeccCCCceeehhhhhhCCCcCCceeccHHHHHHHHHHHHHHhccc---chhhhhhhhhhcc---------------
Confidence            3799999999999999999988889999999999999998888788765   4667777766322               


Q ss_pred             cccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEeccCCC
Q 026513          152 KIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILSE  199 (237)
Q Consensus       152 ~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~~~~~  199 (237)
                             -..|..+++...-..+..+-.++..-++.+..++-.-|.-+
T Consensus       136 -------l~dy~~vviFgaes~m~dLe~KL~~E~p~nt~vvacRFPLP  176 (199)
T KOG4058|consen  136 -------LRDYRNVVIFGAESVMPDLEDKLRTELPANTRVVACRFPLP  176 (199)
T ss_pred             -------ccccceEEEeehHHHHhhhHHHHHhhCcCCCeEEEEecCCC
Confidence                   23566666666556667778888888899999888766444

>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=97.71  E-value=0.00056  Score=58.27  Aligned_cols=113  Identities=19%  Similarity=0.147  Sum_probs=66.3

Q ss_pred             CCeEEEEcCcchHHHHHHHHh--CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccccc
Q 026513           71 GELFLDYGTGSGILGIAAIKF--GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDL  148 (237)
Q Consensus        71 ~~~vLDlG~G~G~~~~~la~~--~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~  148 (237)
                      ..+|||+|||+|.-..++...  ...+++++|.|+.+++.++..+.......   .... .....               
T Consensus        34 P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~---~~~~-~~~~~---------------   94 (274)
T PF09243_consen   34 PRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNR---NAEW-RRVLY---------------   94 (274)
T ss_pred             CceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccc---cchh-hhhhh---------------
Confidence            458999999999876665542  45679999999999999998765432111   0100 11110               


Q ss_pred             ccccccCCCCCCceeEEEEeCChHH-----HHHHHHHHhHhcCCCeEEEEeccCCCCHHHHHHHHh
Q 026513          149 SSHKIRGISQTEKYDVVIANILLNP-----LLQLADHIVSYAKPGAVVGISGILSEQLPHIINRYS  209 (237)
Q Consensus       149 ~~~~~~~~~~~~~fD~I~~n~~~~~-----~~~~l~~~~~~L~~gG~liis~~~~~~~~~~~~~~~  209 (237)
                           .....-.+.|+|++..++..     ...+++.+...+.+  +|++..--+...-+.+...+
T Consensus        95 -----~~~~~~~~~DLvi~s~~L~EL~~~~r~~lv~~LW~~~~~--~LVlVEpGt~~Gf~~i~~aR  153 (274)
T PF09243_consen   95 -----RDFLPFPPDDLVIASYVLNELPSAARAELVRSLWNKTAP--VLVLVEPGTPAGFRRIAEAR  153 (274)
T ss_pred             -----cccccCCCCcEEEEehhhhcCCchHHHHHHHHHHHhccC--cEEEEcCCChHHHHHHHHHH
Confidence                 01111234499998766422     23456666665555  77776554444334443333

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation

>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins

Probab=97.71  E-value=0.00037  Score=58.68  Aligned_cols=118  Identities=21%  Similarity=0.233  Sum_probs=66.4

Q ss_pred             CeEEEEcCcch--HHHHHHHH--hCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccc
Q 026513           72 ELFLDYGTGSG--ILGIAAIK--FGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVED  147 (237)
Q Consensus        72 ~~vLDlG~G~G--~~~~~la~--~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  147 (237)
                      ...||||||--  ..+-.+++  .+..+|+-+|.+|.++..++..+..+.-.    ...++++|++++.      .+   
T Consensus        70 rQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~g----~t~~v~aD~r~p~------~i---  136 (267)
T PF04672_consen   70 RQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPRG----RTAYVQADLRDPE------AI---  136 (267)
T ss_dssp             -EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TTS----EEEEEE--TT-HH------HH---
T ss_pred             ceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCCc----cEEEEeCCCCCHH------HH---
Confidence            57999999953  23334443  47889999999999999999888766432    3778899988542      11   


Q ss_pred             cccccccCCCCCCceeEEEEeCChHHH------HHHHHHHhHhcCCCeEEEEeccCCCCHH
Q 026513          148 LSSHKIRGISQTEKYDVVIANILLNPL------LQLADHIVSYAKPGAVVGISGILSEQLP  202 (237)
Q Consensus       148 ~~~~~~~~~~~~~~fD~I~~n~~~~~~------~~~l~~~~~~L~~gG~liis~~~~~~~~  202 (237)
                      +.+...+.+..-...=.++....++++      ..++..+...|.||.+|.+|....+...
T Consensus       137 L~~p~~~~~lD~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t~d~~p  197 (267)
T PF04672_consen  137 LAHPEVRGLLDFDRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHATDDGAP  197 (267)
T ss_dssp             HCSHHHHCC--TTS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB-TTSH
T ss_pred             hcCHHHHhcCCCCCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEecCCCCCH
Confidence            111122222221233344444445444      4789999999999999999977655433

; PDB: 3GIW_A 3GO4_A 2QE6_A.

>KOG3201 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.70  E-value=6.7e-05  Score=58.12  Aligned_cols=122  Identities=14%  Similarity=0.194  Sum_probs=78.1

Q ss_pred             CCCeEEEEcCc-chHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccc
Q 026513           70 GGELFLDYGTG-SGILGIAAIKF-GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVED  147 (237)
Q Consensus        70 ~~~~vLDlG~G-~G~~~~~la~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  147 (237)
                      .|.+||++|.| +|.-++.+|.. +...|..+|-++..++..++....|-.+. -.+..++.-++..             
T Consensus        29 rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~-~tsc~vlrw~~~~-------------   94 (201)
T KOG3201|consen   29 RGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASS-LTSCCVLRWLIWG-------------   94 (201)
T ss_pred             hHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccc-cceehhhHHHHhh-------------
Confidence            47899999999 46666777754 67789999999999999888776653221 1112221111110             


Q ss_pred             cccccccCCCCCCceeEEEEeC-Ch--HHHHHHHHHHhHhcCCCeEEEEecc-CCCCHHHHHHHHhh
Q 026513          148 LSSHKIRGISQTEKYDVVIANI-LL--NPLLQLADHIVSYAKPGAVVGISGI-LSEQLPHIINRYSE  210 (237)
Q Consensus       148 ~~~~~~~~~~~~~~fD~I~~n~-~~--~~~~~~l~~~~~~L~~gG~liis~~-~~~~~~~~~~~~~~  210 (237)
                           ........+||+|+|.. .+  ++-..+++.+..+|+|.|..++... ..++...+.+....
T Consensus        95 -----aqsq~eq~tFDiIlaADClFfdE~h~sLvdtIk~lL~p~g~Al~fsPRRg~sL~kF~de~~~  156 (201)
T KOG3201|consen   95 -----AQSQQEQHTFDIILAADCLFFDEHHESLVDTIKSLLRPSGRALLFSPRRGQSLQKFLDEVGT  156 (201)
T ss_pred             -----hHHHHhhCcccEEEeccchhHHHHHHHHHHHHHHHhCcccceeEecCcccchHHHHHHHHHh
Confidence                 00111235899999843 32  3445788999999999999877533 44555556655554

>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]

Probab=97.69  E-value=0.0002  Score=62.05  Aligned_cols=94  Identities=17%  Similarity=0.173  Sum_probs=75.1

Q ss_pred             CCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccccccc
Q 026513           71 GELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDLSS  150 (237)
Q Consensus        71 ~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~  150 (237)
                      -...+|+|.|.|..+..+... ..+|.+++++...+-.++.++. .|       +..+.+|.+.                
T Consensus       178 v~~avDvGgGiG~v~k~ll~~-fp~ik~infdlp~v~~~a~~~~-~g-------V~~v~gdmfq----------------  232 (342)
T KOG3178|consen  178 VNVAVDVGGGIGRVLKNLLSK-YPHIKGINFDLPFVLAAAPYLA-PG-------VEHVAGDMFQ----------------  232 (342)
T ss_pred             CceEEEcCCcHhHHHHHHHHh-CCCCceeecCHHHHHhhhhhhc-CC-------cceecccccc----------------
Confidence            378999999999999888774 6779999999999888877765 44       5577888763                


Q ss_pred             ccccCCCCCCceeEEEEeCChHHH-----HHHHHHHhHhcCCCeEEEEecc
Q 026513          151 HKIRGISQTEKYDVVIANILLNPL-----LQLADHIVSYAKPGAVVGISGI  196 (237)
Q Consensus       151 ~~~~~~~~~~~fD~I~~n~~~~~~-----~~~l~~~~~~L~~gG~liis~~  196 (237)
                          .   ..+-|+|++-..+++.     -++++++...|+|||.+++-..
T Consensus       233 ----~---~P~~daI~mkWiLhdwtDedcvkiLknC~~sL~~~GkIiv~E~  276 (342)
T KOG3178|consen  233 ----D---TPKGDAIWMKWILHDWTDEDCVKILKNCKKSLPPGGKIIVVEN  276 (342)
T ss_pred             ----c---CCCcCeEEEEeecccCChHHHHHHHHHHHHhCCCCCEEEEEec
Confidence                1   2356799987777654     4789999999999999999755

>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]

Probab=97.67  E-value=0.00064  Score=62.57  Aligned_cols=124  Identities=25%  Similarity=0.321  Sum_probs=83.0

Q ss_pred             CCchhHHHHHHHHHhhc--cCCCeEEEEcCcchHHHHHHHHh-C----CCeEEEEeCCHHHHHHHHHHHHHcCCCCCcce
Q 026513           52 GEHATTKLCLLLLRRLI--KGGELFLDYGTGSGILGIAAIKF-G----AAMSVGADIDPQAIKSAHQNAALNNIGPKKMK  124 (237)
Q Consensus        52 g~~~~~~~~~~~l~~~~--~~~~~vLDlG~G~G~~~~~la~~-~----~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~  124 (237)
                      |.+-+.+...+++...+  .+..+|+|..||+|.+....... +    ...++|.|+++.....|+.|+-.+++..   .
T Consensus       166 GEfyTP~~v~~liv~~l~~~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~---~  242 (489)
T COG0286         166 GEFYTPREVSELIVELLDPEPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEG---D  242 (489)
T ss_pred             CccCChHHHHHHHHHHcCCCCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCc---c
Confidence            34445555555554443  36779999999999887766543 1    2568999999999999999999888763   2


Q ss_pred             EEeccCccccccccccccccccccccccccCCCCCCceeEEEEeCChH------------------H---------H-HH
Q 026513          125 LHLVPDRTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLN------------------P---------L-LQ  176 (237)
Q Consensus       125 v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~~------------------~---------~-~~  176 (237)
                      +....+|-..-+..               ..-...++||+|++|||+.                  .         . ..
T Consensus       243 ~~i~~~dtl~~~~~---------------~~~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a  307 (489)
T COG0286         243 ANIRHGDTLSNPKH---------------DDKDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLA  307 (489)
T ss_pred             ccccccccccCCcc---------------cccCCccceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHH
Confidence            44555654321100               0011236899999999952                  0         0 24


Q ss_pred             HHHHHhHhcCCCeEEEE
Q 026513          177 LADHIVSYAKPGAVVGI  193 (237)
Q Consensus       177 ~l~~~~~~L~~gG~lii  193 (237)
                      +++.+...|+|||..-+
T Consensus       308 f~~h~~~~l~~~g~aai  324 (489)
T COG0286         308 FLQHILYKLKPGGRAAI  324 (489)
T ss_pred             HHHHHHHhcCCCceEEE
Confidence            68899999999875443

>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=97.66  E-value=2.9e-05  Score=69.76  Aligned_cols=106  Identities=15%  Similarity=0.181  Sum_probs=83.7

Q ss_pred             cCCCeEEEEcCcchHHHHHHHHh--CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccc
Q 026513           69 KGGELFLDYGTGSGILGIAAIKF--GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVE  146 (237)
Q Consensus        69 ~~~~~vLDlG~G~G~~~~~la~~--~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  146 (237)
                      .++.+|||.-|++|.-++..++.  +..+|++.|.++++++..++|++.|+..+   .++....|+...+..        
T Consensus       108 ~~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~---ive~~~~DA~~lM~~--------  176 (525)
T KOG1253|consen  108 EKSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVED---IVEPHHSDANVLMYE--------  176 (525)
T ss_pred             cCcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCchh---hcccccchHHHHHHh--------
Confidence            45678999999999999988864  67889999999999999999999998765   456666776421110        


Q ss_pred             ccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEe
Q 026513          147 DLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGIS  194 (237)
Q Consensus       147 ~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis  194 (237)
                              .......||+|-.+| +.....+++.+.+.++.||.|++.
T Consensus       177 --------~~~~~~~FDvIDLDP-yGs~s~FLDsAvqav~~gGLL~vT  215 (525)
T KOG1253|consen  177 --------HPMVAKFFDVIDLDP-YGSPSPFLDSAVQAVRDGGLLCVT  215 (525)
T ss_pred             --------ccccccccceEecCC-CCCccHHHHHHHHHhhcCCEEEEE
Confidence                    111246899999988 555567889999999999999995

>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]

Probab=97.60  E-value=0.00012  Score=64.54  Aligned_cols=104  Identities=21%  Similarity=0.115  Sum_probs=81.1

Q ss_pred             ccCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccc
Q 026513           68 IKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVED  147 (237)
Q Consensus        68 ~~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  147 (237)
                      +.++..++|+|||.|....+.+.+....++|+|+++..+..+........+.+.   -.++.+|...             
T Consensus       108 ~~~~~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k---~~~~~~~~~~-------------  171 (364)
T KOG1269|consen  108 CFPGSKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKKAYLDNK---CNFVVADFGK-------------  171 (364)
T ss_pred             CcccccccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHHHHhhhh---cceehhhhhc-------------
Confidence            567778999999999999999999888899999999999888877776666652   3345555542             


Q ss_pred             cccccccCCCCCCceeEEEEeCChHHH---HHHHHHHhHhcCCCeEEEEe
Q 026513          148 LSSHKIRGISQTEKYDVVIANILLNPL---LQLADHIVSYAKPGAVVGIS  194 (237)
Q Consensus       148 ~~~~~~~~~~~~~~fD~I~~n~~~~~~---~~~l~~~~~~L~~gG~liis  194 (237)
                             .++.+..||.+.+.-...+.   ..+++++.+.++|||+.+..
T Consensus       172 -------~~fedn~fd~v~~ld~~~~~~~~~~~y~Ei~rv~kpGG~~i~~  214 (364)
T KOG1269|consen  172 -------MPFEDNTFDGVRFLEVVCHAPDLEKVYAEIYRVLKPGGLFIVK  214 (364)
T ss_pred             -------CCCCccccCcEEEEeecccCCcHHHHHHHHhcccCCCceEEeH
Confidence                   33446789999886654333   46788999999999999984

>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes

Probab=97.59  E-value=0.00019  Score=58.17  Aligned_cols=137  Identities=17%  Similarity=0.161  Sum_probs=73.8

Q ss_pred             CCeEEEEcCcchHHHHHHHH-h--CCCeEEEEeCCHHHHHHHHHHHHHc---CCC-------------------------
Q 026513           71 GELFLDYGTGSGILGIAAIK-F--GAAMSVGADIDPQAIKSAHQNAALN---NIG-------------------------  119 (237)
Q Consensus        71 ~~~vLDlG~G~G~~~~~la~-~--~~~~v~~vD~s~~~i~~a~~~~~~~---~~~-------------------------  119 (237)
                      +-++.|.+||+|++.-.+.. +  ....|+|.|+++.+++.|++|+...   |++                         
T Consensus        52 p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~~~~e~~~kps~~eAl~sA  131 (246)
T PF11599_consen   52 PYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREELRELYEQYGKPSHAEALESA  131 (246)
T ss_dssp             -EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHH--HHHHHHHHHH
T ss_pred             CeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHHHHHHHcCCchHHHHHHHH
Confidence            45899999999988665543 2  3467999999999999999986411   100                         


Q ss_pred             ----------CCcceEEeccCccccccccccccccccccccccccCCCCCCceeEEEEeCCh------------HHHHHH
Q 026513          120 ----------PKKMKLHLVPDRTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILL------------NPLLQL  177 (237)
Q Consensus       120 ----------~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~------------~~~~~~  177 (237)
                                .......+.+.|++++....               ........|+|+.+.|+            .+...+
T Consensus       132 ~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~---------------~~~~~~~~diViTDlPYG~~t~W~g~~~~~p~~~m  196 (246)
T PF11599_consen  132 DRLRERLAAEGGDEPHAIFRADVFDPSPLA---------------VLDAGFTPDIVITDLPYGEMTSWQGEGSGGPVAQM  196 (246)
T ss_dssp             HHHHHHHHHTTSS--EEEEE--TT-HHHHH---------------HHHTT---SEEEEE--CCCSSSTTS---HHHHHHH
T ss_pred             HHHHHHHHhcCCCCchhheeecccCCchhh---------------hhccCCCCCEEEecCCCcccccccCCCCCCcHHHH
Confidence                      01112334455555432110               01112347999999884            455789


Q ss_pred             HHHHhHhcCCCeEEEEeccCCCCHHHHHHHHhhccccceeeecCCEEEEEEE
Q 026513          178 ADHIVSYAKPGAVVGISGILSEQLPHIINRYSEFLEDILVSEMDDWTCVSGK  229 (237)
Q Consensus       178 l~~~~~~L~~gG~liis~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~  229 (237)
                      ++.+...|..++++.++ ....+..   .   ..|..++....|.-...+++
T Consensus       197 l~~l~~vLp~~sVV~v~-~k~~Ki~---~---~~~r~~~rlKvGkR~~~l~r  241 (246)
T PF11599_consen  197 LNSLAPVLPERSVVAVS-DKGRKIP---H---DRFRRLERLKVGKRQAALFR  241 (246)
T ss_dssp             HHHHHCCS-TT-EEEEE-ESSSS---------TTS--SEEEEETTEEEEEEE
T ss_pred             HHHHHhhCCCCcEEEEe-cCCcccc---c---chhHHHHHHhccceEEEEEe
Confidence            99999999777777773 3333222   1   23455555566666665553

This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.

>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]

Probab=97.56  E-value=0.0016  Score=56.89  Aligned_cols=112  Identities=15%  Similarity=0.144  Sum_probs=75.4

Q ss_pred             ccCCCeEEEEcCcchHHHHHHHHh---C--CCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccc
Q 026513           68 IKGGELFLDYGTGSGILGIAAIKF---G--AAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVD  142 (237)
Q Consensus        68 ~~~~~~vLDlG~G~G~~~~~la~~---~--~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~  142 (237)
                      ++||.+|||+++-+|.-+..+.+.   .  ...|++-|+++.-+...+..+...+..+    ..+...|.....-.    
T Consensus       153 v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~~~----~~v~~~~~~~~p~~----  224 (375)
T KOG2198|consen  153 VKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPSPN----LLVTNHDASLFPNI----  224 (375)
T ss_pred             cCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCCcc----eeeecccceecccc----
Confidence            578999999999999888776643   2  2379999999999888877775444333    44444443321100    


Q ss_pred             ccccccccccccCC--CCCCceeEEEEeCCh-------------------------HH-HHHHHHHHhHhcCCCeEEEEe
Q 026513          143 GVVEDLSSHKIRGI--SQTEKYDVVIANILL-------------------------NP-LLQLADHIVSYAKPGAVVGIS  194 (237)
Q Consensus       143 ~~~~~~~~~~~~~~--~~~~~fD~I~~n~~~-------------------------~~-~~~~l~~~~~~L~~gG~liis  194 (237)
                               .....  .....||-|+|+.|.                         +. .-.++.+..++|++||.++.|
T Consensus       225 ---------~~~~~~~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYS  295 (375)
T KOG2198|consen  225 ---------YLKDGNDKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYS  295 (375)
T ss_pred             ---------ccccCchhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEe
Confidence                     00000  123479999999871                         11 135789999999999999998


Q ss_pred             cc
Q 026513          195 GI  196 (237)
Q Consensus       195 ~~  196 (237)
                      +.
T Consensus       296 TC  297 (375)
T KOG2198|consen  296 TC  297 (375)
T ss_pred             cc
Confidence            43

>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria

Probab=97.52  E-value=0.00026  Score=60.99  Aligned_cols=84  Identities=18%  Similarity=0.290  Sum_probs=53.1

Q ss_pred             ccCCCeEEEEcCcchHHHHHHHH-hCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccc
Q 026513           68 IKGGELFLDYGTGSGILGIAAIK-FGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVE  146 (237)
Q Consensus        68 ~~~~~~vLDlG~G~G~~~~~la~-~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  146 (237)
                      ..++..++|.--|.|+.+..+.. .+..+++|+|-|+.+++.|++++...  .+   ++.++++++.+.      .+.+.
T Consensus        18 ~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~--~~---r~~~~~~~F~~l------~~~l~   86 (310)
T PF01795_consen   18 PKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKF--DD---RFIFIHGNFSNL------DEYLK   86 (310)
T ss_dssp             --TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCC--CT---TEEEEES-GGGH------HHHHH
T ss_pred             cCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhc--cc---eEEEEeccHHHH------HHHHH
Confidence            46778999999999999998875 46689999999999999998877644  22   478888886531      11111


Q ss_pred             ccccccccCCCCCCceeEEEEeCC
Q 026513          147 DLSSHKIRGISQTEKYDVVIANIL  170 (237)
Q Consensus       147 ~~~~~~~~~~~~~~~fD~I~~n~~  170 (237)
                      .        .....++|.|+.+..
T Consensus        87 ~--------~~~~~~~dgiL~DLG  102 (310)
T PF01795_consen   87 E--------LNGINKVDGILFDLG  102 (310)
T ss_dssp             H--------TTTTS-EEEEEEE-S
T ss_pred             H--------ccCCCccCEEEEccc
Confidence            1        112357899988664

The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.

>PHA01634 hypothetical protein

Probab=97.40  E-value=0.00041  Score=51.63  Aligned_cols=51  Identities=18%  Similarity=0.068  Sum_probs=47.0

Q ss_pred             cCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCC
Q 026513           69 KGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIG  119 (237)
Q Consensus        69 ~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~  119 (237)
                      -.+++|+|+|.+.|.-+++++..|+.+|++++.++...+..+++++.+.+-
T Consensus        27 vk~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~kl~k~~een~k~nnI~   77 (156)
T PHA01634         27 VYQRTIQIVGADCGSSALYFLLRGASFVVQYEKEEKLRKKWEEVCAYFNIC   77 (156)
T ss_pred             ecCCEEEEecCCccchhhHHhhcCccEEEEeccCHHHHHHHHHHhhhheee
Confidence            358899999999999999999999999999999999999999999887654

>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases

Probab=97.36  E-value=0.00068  Score=55.25  Aligned_cols=53  Identities=26%  Similarity=0.369  Sum_probs=40.3

Q ss_pred             HHHHHHHHhhccCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHH
Q 026513           58 KLCLLLLRRLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQ  111 (237)
Q Consensus        58 ~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~  111 (237)
                      .++.+.++..-.+|..|||..||+|+.+.++.+. .++.+|+|+++..++.|++
T Consensus       179 ~l~~~lI~~~t~~gdiVlDpF~GSGTT~~aa~~l-~R~~ig~E~~~~y~~~a~~  231 (231)
T PF01555_consen  179 ELIERLIKASTNPGDIVLDPFAGSGTTAVAAEEL-GRRYIGIEIDEEYCEIAKK  231 (231)
T ss_dssp             HHHHHHHHHHS-TT-EEEETT-TTTHHHHHHHHT-T-EEEEEESSHHHHHHHHH
T ss_pred             HHHHHHHHhhhccceeeehhhhccChHHHHHHHc-CCeEEEEeCCHHHHHHhcC
Confidence            4444555555678999999999999999998888 4559999999999999874

In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....

>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]

Probab=97.33  E-value=0.00095  Score=56.62  Aligned_cols=107  Identities=20%  Similarity=0.144  Sum_probs=79.6

Q ss_pred             CCCeEEEEcCcchHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccccc
Q 026513           70 GGELFLDYGTGSGILGIAAIKF-GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDL  148 (237)
Q Consensus        70 ~~~~vLDlG~G~G~~~~~la~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~  148 (237)
                      ..++||-+|-|.|.+....+++ ....+..+|++...++..++.+...-.....-++.+.-||.+.+.            
T Consensus       121 npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl------------  188 (337)
T KOG1562|consen  121 NPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFL------------  188 (337)
T ss_pred             CCCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHH------------
Confidence            4578999999999998887765 457899999999999999988765433333335777788887322            


Q ss_pred             ccccccCCCCCCceeEEEEeCC--h-----HHHHHHHHHHhHhcCCCeEEEEe
Q 026513          149 SSHKIRGISQTEKYDVVIANIL--L-----NPLLQLADHIVSYAKPGAVVGIS  194 (237)
Q Consensus       149 ~~~~~~~~~~~~~fD~I~~n~~--~-----~~~~~~l~~~~~~L~~gG~liis  194 (237)
                            ...+..+||+|+.+..  .     -....++..+.+.||++|++++.
T Consensus       189 ------~~~~~~~~dVii~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q  235 (337)
T KOG1562|consen  189 ------EDLKENPFDVIITDSSDPVGPACALFQKPYFGLVLDALKGDGVVCTQ  235 (337)
T ss_pred             ------HHhccCCceEEEEecCCccchHHHHHHHHHHHHHHHhhCCCcEEEEe
Confidence                  2223579999997543  1     22346788899999999999985

>KOG1227 consensus Putative methyltransferase [General function prediction only]

Probab=97.32  E-value=0.00029  Score=59.78  Aligned_cols=96  Identities=19%  Similarity=0.216  Sum_probs=69.9

Q ss_pred             CCCeEEEEcCcchHHHH-HHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccccc
Q 026513           70 GGELFLDYGTGSGILGI-AAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDL  148 (237)
Q Consensus        70 ~~~~vLDlG~G~G~~~~-~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~  148 (237)
                      .+..|.|+.+|-|+|+. .+...|++.|+++|.+|.+++..++++..|++..   +..++.+|-.               
T Consensus       194 ~~eviVDLYAGIGYFTlpflV~agAk~V~A~EwNp~svEaLrR~~~~N~V~~---r~~i~~gd~R---------------  255 (351)
T KOG1227|consen  194 DGEVIVDLYAGIGYFTLPFLVTAGAKTVFACEWNPWSVEALRRNAEANNVMD---RCRITEGDNR---------------  255 (351)
T ss_pred             ccchhhhhhcccceEEeehhhccCccEEEEEecCHHHHHHHHHHHHhcchHH---HHHhhhcccc---------------
Confidence            46899999999999999 5668899999999999999999999999998765   4556667654               


Q ss_pred             ccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeE
Q 026513          149 SSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAV  190 (237)
Q Consensus       149 ~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~  190 (237)
                            ...++...|-|.....- ...+-...+...|+|.|.
T Consensus       256 ------~~~~~~~AdrVnLGLlP-Sse~~W~~A~k~Lk~egg  290 (351)
T KOG1227|consen  256 ------NPKPRLRADRVNLGLLP-SSEQGWPTAIKALKPEGG  290 (351)
T ss_pred             ------ccCccccchheeecccc-ccccchHHHHHHhhhcCC
Confidence                  33345677888765422 222223345556666554

>PRK11524 putative methyltransferase; Provisional

Probab=97.30  E-value=0.001  Score=56.94  Aligned_cols=57  Identities=21%  Similarity=0.199  Sum_probs=46.7

Q ss_pred             HHHHHHHHhhccCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHH
Q 026513           58 KLCLLLLRRLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAAL  115 (237)
Q Consensus        58 ~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~  115 (237)
                      .++.+.++..-.+|..|||..+|+|+.++++.+. .++.+|+|++++.++.|++++..
T Consensus       196 ~L~erlI~~~S~~GD~VLDPF~GSGTT~~AA~~l-gR~~IG~Ei~~~Y~~~a~~Rl~~  252 (284)
T PRK11524        196 ALLKRIILASSNPGDIVLDPFAGSFTTGAVAKAS-GRKFIGIEINSEYIKMGLRRLDV  252 (284)
T ss_pred             HHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHc-CCCEEEEeCCHHHHHHHHHHHHh
Confidence            4444444445578999999999999999998888 45699999999999999998753

>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]

Probab=97.29  E-value=3.2e-05  Score=62.24  Aligned_cols=90  Identities=16%  Similarity=0.179  Sum_probs=63.1

Q ss_pred             CCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccccccc
Q 026513           71 GELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDLSS  150 (237)
Q Consensus        71 ~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~  150 (237)
                      ..++||+|+|.|-++..++.. ..+|+++|.|..|+...++.    +..     +- ...++.+                
T Consensus       113 ~~~lLDlGAGdGeit~~m~p~-feevyATElS~tMr~rL~kk----~yn-----Vl-~~~ew~~----------------  165 (288)
T KOG3987|consen  113 PVTLLDLGAGDGEITLRMAPT-FEEVYATELSWTMRDRLKKK----NYN-----VL-TEIEWLQ----------------  165 (288)
T ss_pred             CeeEEeccCCCcchhhhhcch-HHHHHHHHhhHHHHHHHhhc----CCc-----ee-eehhhhh----------------
Confidence            468999999999999998876 66799999999998766543    211     11 1122211                


Q ss_pred             ccccCCCCCCceeEEEEeCChHH---HHHHHHHHhHhcCC-CeEEEEe
Q 026513          151 HKIRGISQTEKYDVVIANILLNP---LLQLADHIVSYAKP-GAVVGIS  194 (237)
Q Consensus       151 ~~~~~~~~~~~fD~I~~n~~~~~---~~~~l~~~~~~L~~-gG~liis  194 (237)
                             -+-+||+|.|--.++.   .-++++.+...|+| +|+++++
T Consensus       166 -------t~~k~dli~clNlLDRc~~p~kLL~Di~~vl~psngrviva  206 (288)
T KOG3987|consen  166 -------TDVKLDLILCLNLLDRCFDPFKLLEDIHLVLAPSNGRVIVA  206 (288)
T ss_pred             -------cCceeehHHHHHHHHhhcChHHHHHHHHHHhccCCCcEEEE
Confidence                   1458999998554422   13578888999988 9998875

>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []

Probab=97.28  E-value=0.0021  Score=52.18  Aligned_cols=122  Identities=16%  Similarity=0.247  Sum_probs=60.6

Q ss_pred             hhHHHHHHHHHhhccCCCeEEEEcCcchHHHHHHHH----h-CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEecc
Q 026513           55 ATTKLCLLLLRRLIKGGELFLDYGTGSGILGIAAIK----F-GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVP  129 (237)
Q Consensus        55 ~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~la~----~-~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~  129 (237)
                      |......+.+-..++| ..|+|+|.-.|+-++.+|.    . +.++|+|+|++-+....  +.....+...   ++++++
T Consensus        18 P~Dm~~~qeli~~~kP-d~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~--~a~e~hp~~~---rI~~i~   91 (206)
T PF04989_consen   18 PQDMVAYQELIWELKP-DLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNR--KAIESHPMSP---RITFIQ   91 (206)
T ss_dssp             HHHHHHHHHHHHHH---SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S---GGGG----T---TEEEEE
T ss_pred             HHHHHHHHHHHHHhCC-CeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhch--HHHhhccccC---ceEEEE
Confidence            3344444444444454 5899999999877766552    3 56889999996544322  1122223333   588999


Q ss_pred             CccccccccccccccccccccccccCCCCCCceeEEEEeCC--hHHHHHHHHHHhHhcCCCeEEEEe
Q 026513          130 DRTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANIL--LNPLLQLADHIVSYAKPGAVVGIS  194 (237)
Q Consensus       130 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~--~~~~~~~l~~~~~~L~~gG~liis  194 (237)
                      ||..++..-+.+            ..........+|+.+..  ..+...-++....++++|+++++-
T Consensus        92 Gds~d~~~~~~v------------~~~~~~~~~vlVilDs~H~~~hvl~eL~~y~plv~~G~Y~IVe  146 (206)
T PF04989_consen   92 GDSIDPEIVDQV------------RELASPPHPVLVILDSSHTHEHVLAELEAYAPLVSPGSYLIVE  146 (206)
T ss_dssp             S-SSSTHHHHTS------------GSS----SSEEEEESS----SSHHHHHHHHHHT--TT-EEEET
T ss_pred             CCCCCHHHHHHH------------HHhhccCCceEEEECCCccHHHHHHHHHHhCccCCCCCEEEEE
Confidence            998754322211            12222346678887764  233344567789999999999984

Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.

>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]

Probab=97.28  E-value=0.0005  Score=61.15  Aligned_cols=54  Identities=24%  Similarity=0.452  Sum_probs=48.6

Q ss_pred             eEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEecc
Q 026513           73 LFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVP  129 (237)
Q Consensus        73 ~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~  129 (237)
                      .|||+|+|+|.+++.+++.|+..|+++|.-..|.+.|++...++|.+.   ++.++.
T Consensus        69 ~vLdigtGTGLLSmMAvragaD~vtA~EvfkPM~d~arkI~~kng~Sd---kI~vIn  122 (636)
T KOG1501|consen   69 FVLDIGTGTGLLSMMAVRAGADSVTACEVFKPMVDLARKIMHKNGMSD---KINVIN  122 (636)
T ss_pred             EEEEccCCccHHHHHHHHhcCCeEEeehhhchHHHHHHHHHhcCCCcc---ceeeec
Confidence            599999999999999999999999999999999999999999999886   455544

>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein

Probab=97.25  E-value=0.0033  Score=51.22  Aligned_cols=140  Identities=13%  Similarity=0.125  Sum_probs=84.7

Q ss_pred             hhHHHHHHHHHhhcc------CCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEec
Q 026513           55 ATTKLCLLLLRRLIK------GGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLV  128 (237)
Q Consensus        55 ~~~~~~~~~l~~~~~------~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~  128 (237)
                      ...+.++++++....      ...++||+||=+......  ..+.-.|+.||+++..                   -.+.
T Consensus        30 dSSK~lv~wL~~~~~~~~~~~~~lrlLEVGals~~N~~s--~~~~fdvt~IDLns~~-------------------~~I~   88 (219)
T PF11968_consen   30 DSSKWLVEWLKELGVRPKNGRPKLRLLEVGALSTDNACS--TSGWFDVTRIDLNSQH-------------------PGIL   88 (219)
T ss_pred             chhHHHHHHhhhhccccccccccceEEeecccCCCCccc--ccCceeeEEeecCCCC-------------------CCce
Confidence            456788888876422      125999999854433222  2344459999998821                   2244


Q ss_pred             cCccccccccccccccccccccccccCCCCCCceeEEEEeCChHH------HHHHHHHHhHhcCCCeE-----EEEe---
Q 026513          129 PDRTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLNP------LLQLADHIVSYAKPGAV-----VGIS---  194 (237)
Q Consensus       129 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~~~------~~~~l~~~~~~L~~gG~-----liis---  194 (237)
                      +.|+.+.+++.                 ...++||+|.+..++..      ..+++.++.++|+|+|.     |++.   
T Consensus        89 qqDFm~rplp~-----------------~~~e~FdvIs~SLVLNfVP~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~  151 (219)
T PF11968_consen   89 QQDFMERPLPK-----------------NESEKFDVISLSLVLNFVPDPKQRGEMLRRAHKFLKPPGLSLFPSLFLVLPL  151 (219)
T ss_pred             eeccccCCCCC-----------------CcccceeEEEEEEEEeeCCCHHHHHHHHHHHHHHhCCCCccCcceEEEEeCc
Confidence            66766433220                 12578999998665432      34789999999999999     7763   


Q ss_pred             -ccCCCC---HHHHHHHHhhc-cccceeeecCCEEEEEEEEcc
Q 026513          195 -GILSEQ---LPHIINRYSEF-LEDILVSEMDDWTCVSGKKKR  232 (237)
Q Consensus       195 -~~~~~~---~~~~~~~~~~~-~~~~~~~~~~~w~~~~~~~~~  232 (237)
                       |+....   ...+...+..- |..+.......-.+..+++..
T Consensus       152 ~Cv~NSRy~~~~~l~~im~~LGf~~~~~~~~~Kl~y~l~r~~~  194 (219)
T PF11968_consen  152 PCVTNSRYMTEERLREIMESLGFTRVKYKKSKKLAYWLFRKSG  194 (219)
T ss_pred             hHhhcccccCHHHHHHHHHhCCcEEEEEEecCeEEEEEEeecC
Confidence             442221   22333333332 666666666666666666543

>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]

Probab=97.21  E-value=0.0033  Score=52.50  Aligned_cols=113  Identities=17%  Similarity=0.147  Sum_probs=69.3

Q ss_pred             CCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcc--eEEeccCcccccccccccccccccc
Q 026513           71 GELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKM--KLHLVPDRTFTASMNERVDGVVEDL  148 (237)
Q Consensus        71 ~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~--~v~~~~~d~~~~~~~~~~~~~~~~~  148 (237)
                      ..+||++|+|+|..++.++.....+|...|...... ..+.+...++......  .+.+...+|.++...          
T Consensus        87 ~~~vlELGsGtglvG~~aa~~~~~~v~ltD~~~~~~-~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~----------  155 (248)
T KOG2793|consen   87 YINVLELGSGTGLVGILAALLLGAEVVLTDLPKVVE-NLKFNRDKNNIALNQLGGSVIVAILVWGNALDV----------  155 (248)
T ss_pred             ceeEEEecCCccHHHHHHHHHhcceeccCCchhhHH-HHHHhhhhhhhhhhhcCCceeEEEEecCCcccH----------
Confidence            446999999999999998887778888888877443 3333333222211111  244445555433211          


Q ss_pred             ccccccCCCCCCceeEEEEeCCh---HHHHHHHHHHhHhcCCCeEEEEeccCCCC
Q 026513          149 SSHKIRGISQTEKYDVVIANILL---NPLLQLADHIVSYAKPGAVVGISGILSEQ  200 (237)
Q Consensus       149 ~~~~~~~~~~~~~fD~I~~n~~~---~~~~~~l~~~~~~L~~gG~liis~~~~~~  200 (237)
                            .......+|+|++.-++   +....++..+..+|..++.+++...+...
T Consensus       156 ------~~~~~~~~DlilasDvvy~~~~~e~Lv~tla~ll~~~~~i~l~~~lr~~  204 (248)
T KOG2793|consen  156 ------SFRLPNPFDLILASDVVYEEESFEGLVKTLAFLLAKDGTIFLAYPLRRD  204 (248)
T ss_pred             ------hhccCCcccEEEEeeeeecCCcchhHHHHHHHHHhcCCeEEEEEecccc
Confidence                  11111128999975543   34456778888888899977776665553

>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A

Probab=97.21  E-value=0.0026  Score=52.99  Aligned_cols=89  Identities=18%  Similarity=0.077  Sum_probs=58.8

Q ss_pred             HHHHHhhccCCCeEEEEcCcchHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccc
Q 026513           61 LLLLRRLIKGGELFLDYGTGSGILGIAAIKF-GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNE  139 (237)
Q Consensus        61 ~~~l~~~~~~~~~vLDlG~G~G~~~~~la~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~  139 (237)
                      .+.+...+++..+|+|||||.-=+++..... +...++|.||+..+++.....+...+..     ..+...|...     
T Consensus        96 Y~~if~~~~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~~-----~~~~v~Dl~~-----  165 (251)
T PF07091_consen   96 YDEIFGRIPPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGVP-----HDARVRDLLS-----  165 (251)
T ss_dssp             HHHHCCCS---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT-C-----EEEEEE-TTT-----
T ss_pred             HHHHHhcCCCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCCC-----cceeEeeeec-----
Confidence            3333333455779999999998888776543 4568999999999999999998877754     4444455542     


Q ss_pred             cccccccccccccccCCCCCCceeEEEEeCChHHHH
Q 026513          140 RVDGVVEDLSSHKIRGISQTEKYDVVIANILLNPLL  175 (237)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~~~~~  175 (237)
                                      -.+....|+++.--.++.+.
T Consensus       166 ----------------~~~~~~~DlaLllK~lp~le  185 (251)
T PF07091_consen  166 ----------------DPPKEPADLALLLKTLPCLE  185 (251)
T ss_dssp             ----------------SHTTSEESEEEEET-HHHHH
T ss_pred             ----------------cCCCCCcchhhHHHHHHHHH
Confidence                            22356899999988777664

>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology

Probab=97.14  E-value=0.0014  Score=55.92  Aligned_cols=71  Identities=15%  Similarity=0.156  Sum_probs=53.1

Q ss_pred             eEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccccccccc
Q 026513           73 LFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDLSSHK  152 (237)
Q Consensus        73 ~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~  152 (237)
                      +++|+.||.|.+...+.+.|...+.++|+++.+++..+.|...         . ++.+|+.+....              
T Consensus         2 ~v~dLFsG~Gg~~~gl~~~G~~~v~a~e~~~~a~~~~~~N~~~---------~-~~~~Di~~~~~~--------------   57 (275)
T cd00315           2 RVIDLFAGIGGFRLGLEKAGFEIVAANEIDKSAAETYEANFPN---------K-LIEGDITKIDEK--------------   57 (275)
T ss_pred             cEEEEccCcchHHHHHHHcCCEEEEEEeCCHHHHHHHHHhCCC---------C-CccCccccCchh--------------
Confidence            6999999999999988888888899999999999988877531         1 345665421100              


Q ss_pred             ccCCCCCCceeEEEEeCCh
Q 026513          153 IRGISQTEKYDVVIANILL  171 (237)
Q Consensus       153 ~~~~~~~~~fD~I~~n~~~  171 (237)
                        ..  ...+|+++..+|.
T Consensus        58 --~~--~~~~D~l~~gpPC   72 (275)
T cd00315          58 --DF--IPDIDLLTGGFPC   72 (275)
T ss_pred             --hc--CCCCCEEEeCCCC
Confidence              11  2479999999984

Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.

>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.10  E-value=0.0011  Score=54.38  Aligned_cols=121  Identities=17%  Similarity=0.180  Sum_probs=82.5

Q ss_pred             ccCCCeEEEEcCcchHHHHHHHHh--C----C----CeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccc
Q 026513           68 IKGGELFLDYGTGSGILGIAAIKF--G----A----AMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASM  137 (237)
Q Consensus        68 ~~~~~~vLDlG~G~G~~~~~la~~--~----~----~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~  137 (237)
                      +..-.|++|+++-+|..+..+++.  .    .    .+|+++|+-+.+           ++..    +..+++|+...+.
T Consensus        39 ~~gv~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~Ma-----------PI~G----V~qlq~DIT~~st  103 (294)
T KOG1099|consen   39 FEGVKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMA-----------PIEG----VIQLQGDITSAST  103 (294)
T ss_pred             HhhhhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCC-----------ccCc----eEEeecccCCHhH
Confidence            344578999999999999888753  1    1    139999998844           4443    7788999886554


Q ss_pred             cccccccccccccccccCCCCCCceeEEEEeCC-----hHHHH---------HHHHHHhHhcCCCeEEEEeccCCCCHHH
Q 026513          138 NERVDGVVEDLSSHKIRGISQTEKYDVVIANIL-----LNPLL---------QLADHIVSYAKPGAVVGISGILSEQLPH  203 (237)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~-----~~~~~---------~~l~~~~~~L~~gG~liis~~~~~~~~~  203 (237)
                      .+.+            -..+.+++.|+|+|+..     +|.+.         ..+.-....|+|||.++--=+......-
T Consensus       104 ae~I------------i~hfggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaKifRg~~tsl  171 (294)
T KOG1099|consen  104 AEAI------------IEHFGGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAKIFRGRDTSL  171 (294)
T ss_pred             HHHH------------HHHhCCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeehhhhccCchHH
Confidence            3211            12234569999999875     33332         2355566789999999887666777777


Q ss_pred             HHHHHhhccccc
Q 026513          204 IINRYSEFLEDI  215 (237)
Q Consensus       204 ~~~~~~~~~~~~  215 (237)
                      +-.+++.+|.-+
T Consensus       172 Lysql~~ff~kv  183 (294)
T KOG1099|consen  172 LYSQLRKFFKKV  183 (294)
T ss_pred             HHHHHHHHhhce
Confidence            777777665443

>PRK13699 putative methylase; Provisional

Probab=97.06  E-value=0.0031  Score=52.24  Aligned_cols=57  Identities=23%  Similarity=0.240  Sum_probs=45.9

Q ss_pred             HHHHHHHhhccCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHc
Q 026513           59 LCLLLLRRLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALN  116 (237)
Q Consensus        59 ~~~~~l~~~~~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~  116 (237)
                      ++...++..-.+|..|||..||+|+.++++.+.+ .+.+|+|+++...+.|.+++...
T Consensus       152 l~~~~i~~~s~~g~~vlDpf~Gsgtt~~aa~~~~-r~~~g~e~~~~y~~~~~~r~~~~  208 (227)
T PRK13699        152 SLQPLIESFTHPNAIVLDPFAGSGSTCVAALQSG-RRYIGIELLEQYHRAGQQRLAAV  208 (227)
T ss_pred             HHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHcC-CCEEEEecCHHHHHHHHHHHHHH
Confidence            3444444445689999999999999999888885 45899999999999999887653

>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised

Probab=97.01  E-value=0.0016  Score=53.97  Aligned_cols=82  Identities=15%  Similarity=0.210  Sum_probs=47.3

Q ss_pred             CeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCC-----cceEEeccCcccccccccccccccc
Q 026513           72 ELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPK-----KMKLHLVPDRTFTASMNERVDGVVE  146 (237)
Q Consensus        72 ~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~-----~~~v~~~~~d~~~~~~~~~~~~~~~  146 (237)
                      .+|||.-+|-|.-+..++..|. +|+++|-||-+....+..+....-...     .-+++++++|..+..          
T Consensus        77 ~~VLDaTaGLG~Da~vlA~~G~-~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~L----------  145 (234)
T PF04445_consen   77 PSVLDATAGLGRDAFVLASLGC-KVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEYL----------  145 (234)
T ss_dssp             --EEETT-TTSHHHHHHHHHT---EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCHC----------
T ss_pred             CEEEECCCcchHHHHHHHccCC-eEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHHH----------
Confidence            3899999999999999888865 699999999887776654432211111     126888899876321          


Q ss_pred             ccccccccCCCCCCceeEEEEeCChHH
Q 026513          147 DLSSHKIRGISQTEKYDVVIANILLNP  173 (237)
Q Consensus       147 ~~~~~~~~~~~~~~~fD~I~~n~~~~~  173 (237)
                              . .+..+||+|+++|++..
T Consensus       146 --------~-~~~~s~DVVY~DPMFp~  163 (234)
T PF04445_consen  146 --------R-QPDNSFDVVYFDPMFPE  163 (234)
T ss_dssp             --------C-CHSS--SEEEE--S---
T ss_pred             --------h-hcCCCCCEEEECCCCCC
Confidence                    1 23579999999998754

; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.

>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]

Probab=96.94  E-value=0.0082  Score=54.36  Aligned_cols=103  Identities=17%  Similarity=0.171  Sum_probs=73.4

Q ss_pred             ccCCC-eEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccc
Q 026513           68 IKGGE-LFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVE  146 (237)
Q Consensus        68 ~~~~~-~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  146 (237)
                      +.+-. +++-+|||+--+...+-.-|...|+.+|+|+.+++.+......   ...  ...+...|...            
T Consensus        45 ~~p~~~~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~~~~~~---~~~--~~~~~~~d~~~------------  107 (482)
T KOG2352|consen   45 LSPSDFKILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQVRNAK---ERP--EMQMVEMDMDQ------------  107 (482)
T ss_pred             hchhhceeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHHHhcccc---CCc--ceEEEEecchh------------
Confidence            44555 9999999999888888888999999999999999887654321   111  25566677653            


Q ss_pred             ccccccccCCCCCCceeEEEEeCCh-------------HHHHHHHHHHhHhcCCCeEEEEec
Q 026513          147 DLSSHKIRGISQTEKYDVVIANILL-------------NPLLQLADHIVSYAKPGAVVGISG  195 (237)
Q Consensus       147 ~~~~~~~~~~~~~~~fD~I~~n~~~-------------~~~~~~l~~~~~~L~~gG~liis~  195 (237)
                              ...++++||+|+.=+.+             .+....+..+.+++++||..+.-.
T Consensus       108 --------l~fedESFdiVIdkGtlDal~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svt  161 (482)
T KOG2352|consen  108 --------LVFEDESFDIVIDKGTLDALFEDEDALLNTAHVSNMLDEVSRVLAPGGKYISVT  161 (482)
T ss_pred             --------ccCCCcceeEEEecCccccccCCchhhhhhHHhhHHHhhHHHHhccCCEEEEEE
Confidence                    22346778887753322             233466889999999999977643

>COG1568 Predicted methyltransferases [General function prediction only]

Probab=96.91  E-value=0.0053  Score=51.75  Aligned_cols=102  Identities=18%  Similarity=0.106  Sum_probs=77.4

Q ss_pred             CCCeEEEEcCcchHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccccc
Q 026513           70 GGELFLDYGTGSGILGIAAIKF-GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDL  148 (237)
Q Consensus        70 ~~~~vLDlG~G~G~~~~~la~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~  148 (237)
                      .|+.|+-+| -.-..+++++.. ...+|..+|++++.++...+.+...++.+    ++.+.-|+.++...+         
T Consensus       152 ~gK~I~vvG-DDDLtsia~aLt~mpk~iaVvDIDERli~fi~k~aee~g~~~----ie~~~~Dlr~plpe~---------  217 (354)
T COG1568         152 EGKEIFVVG-DDDLTSIALALTGMPKRIAVVDIDERLIKFIEKVAEELGYNN----IEAFVFDLRNPLPED---------  217 (354)
T ss_pred             CCCeEEEEc-CchhhHHHHHhcCCCceEEEEechHHHHHHHHHHHHHhCccc----hhheeehhcccChHH---------
Confidence            467899999 556667766643 36789999999999999999999999886    777777776543221         


Q ss_pred             ccccccCCCCCCceeEEEEeCCh--HHHHHHHHHHhHhcCCC---eEEEEe
Q 026513          149 SSHKIRGISQTEKYDVVIANILL--NPLLQLADHIVSYAKPG---AVVGIS  194 (237)
Q Consensus       149 ~~~~~~~~~~~~~fD~I~~n~~~--~~~~~~l~~~~~~L~~g---G~liis  194 (237)
                               ..++||+.+.+||.  ..++.++.+-...|+.-   |++.++
T Consensus       218 ---------~~~kFDvfiTDPpeTi~alk~FlgRGI~tLkg~~~aGyfgiT  259 (354)
T COG1568         218 ---------LKRKFDVFITDPPETIKALKLFLGRGIATLKGEGCAGYFGIT  259 (354)
T ss_pred             ---------HHhhCCeeecCchhhHHHHHHHHhccHHHhcCCCccceEeee
Confidence                     14699999999984  45567788877888877   677765

>KOG1331 consensus Predicted methyltransferase [General function prediction only]

Probab=96.89  E-value=0.001  Score=56.14  Aligned_cols=95  Identities=15%  Similarity=0.198  Sum_probs=69.2

Q ss_pred             cCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccccc
Q 026513           69 KGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDL  148 (237)
Q Consensus        69 ~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~  148 (237)
                      ..|..++|+|||.|-++.   ..+...++|.|++...+..+++.    +..      ....+|+..              
T Consensus        44 ~~gsv~~d~gCGngky~~---~~p~~~~ig~D~c~~l~~~ak~~----~~~------~~~~ad~l~--------------   96 (293)
T KOG1331|consen   44 PTGSVGLDVGCGNGKYLG---VNPLCLIIGCDLCTGLLGGAKRS----GGD------NVCRADALK--------------   96 (293)
T ss_pred             CCcceeeecccCCcccCc---CCCcceeeecchhhhhccccccC----CCc------eeehhhhhc--------------
Confidence            458899999999996642   22556689999999988877643    211      233455542              


Q ss_pred             ccccccCCCCCCceeEEEEeCChHHHH------HHHHHHhHhcCCCeEEEEecc
Q 026513          149 SSHKIRGISQTEKYDVVIANILLNPLL------QLADHIVSYAKPGAVVGISGI  196 (237)
Q Consensus       149 ~~~~~~~~~~~~~fD~I~~n~~~~~~~------~~l~~~~~~L~~gG~liis~~  196 (237)
                            .+....+||.+++-.++|++.      .+++++.+.|+|||...+-..
T Consensus        97 ------~p~~~~s~d~~lsiavihhlsT~~RR~~~l~e~~r~lrpgg~~lvyvw  144 (293)
T KOG1331|consen   97 ------LPFREESFDAALSIAVIHHLSTRERRERALEELLRVLRPGGNALVYVW  144 (293)
T ss_pred             ------CCCCCCccccchhhhhhhhhhhHHHHHHHHHHHHHHhcCCCceEEEEe
Confidence                  233467899999988888873      568999999999999877544

>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

Probab=96.88  E-value=0.0035  Score=55.27  Aligned_cols=105  Identities=22%  Similarity=0.344  Sum_probs=69.5

Q ss_pred             cCCCeEEEEcCcc-hHHHHHHHH-hCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccC-ccccccccccccccc
Q 026513           69 KGGELFLDYGTGS-GILGIAAIK-FGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPD-RTFTASMNERVDGVV  145 (237)
Q Consensus        69 ~~~~~vLDlG~G~-G~~~~~la~-~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~-d~~~~~~~~~~~~~~  145 (237)
                      .++.+|+-+|||+ |.++..+++ .|+.+|+++|.++.-++.|++......+.+       ... +...           
T Consensus       167 ~~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~-------~~~~~~~~-----------  228 (350)
T COG1063         167 RPGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADVVVN-------PSEDDAGA-----------  228 (350)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCeEeec-------CccccHHH-----------
Confidence            3444999999998 888877776 588999999999999999987432111110       001 1000           


Q ss_pred             cccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEeccCCCC
Q 026513          146 EDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILSEQ  200 (237)
Q Consensus       146 ~~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~~~~~~  200 (237)
                            ..........+|+++-...   ....+..+..+++++|.+.+-++....
T Consensus       229 ------~~~~~t~g~g~D~vie~~G---~~~~~~~ai~~~r~gG~v~~vGv~~~~  274 (350)
T COG1063         229 ------EILELTGGRGADVVIEAVG---SPPALDQALEALRPGGTVVVVGVYGGE  274 (350)
T ss_pred             ------HHHHHhCCCCCCEEEECCC---CHHHHHHHHHHhcCCCEEEEEeccCCc
Confidence                  0001112347999996554   334667888999999999998776444

>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.79  E-value=0.0048  Score=53.17  Aligned_cols=107  Identities=20%  Similarity=0.217  Sum_probs=67.2

Q ss_pred             hccCCCeEEEEcCcc-hHHHHHHHH-hCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccc
Q 026513           67 LIKGGELFLDYGTGS-GILGIAAIK-FGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGV  144 (237)
Q Consensus        67 ~~~~~~~vLDlG~G~-G~~~~~la~-~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~  144 (237)
                      .+++|.+||-+|+|+ |.++...|+ .|+.+|+.+|+++..++.|++ +   |.+.    +.......   . .+.+.+.
T Consensus       166 ~vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~-~---Ga~~----~~~~~~~~---~-~~~~~~~  233 (354)
T KOG0024|consen  166 GVKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKK-F---GATV----TDPSSHKS---S-PQELAEL  233 (354)
T ss_pred             CcccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH-h---CCeE----Eeeccccc---c-HHHHHHH
Confidence            367899999999997 888887776 599999999999999999997 3   3221    22111111   0 0000000


Q ss_pred             ccccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEecc
Q 026513          145 VEDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGI  196 (237)
Q Consensus       145 ~~~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~~  196 (237)
                      ++        .......+|+.|.-.-.+   .-++.....++.||.+++.++
T Consensus       234 v~--------~~~g~~~~d~~~dCsG~~---~~~~aai~a~r~gGt~vlvg~  274 (354)
T KOG0024|consen  234 VE--------KALGKKQPDVTFDCSGAE---VTIRAAIKATRSGGTVVLVGM  274 (354)
T ss_pred             HH--------hhccccCCCeEEEccCch---HHHHHHHHHhccCCEEEEecc
Confidence            00        111124588888654333   234556778899999887654

>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]

Probab=96.76  E-value=0.023  Score=48.77  Aligned_cols=132  Identities=18%  Similarity=0.162  Sum_probs=73.0

Q ss_pred             hHHHHHHHHHhhccC------CCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEecc
Q 026513           56 TTKLCLLLLRRLIKG------GELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVP  129 (237)
Q Consensus        56 ~~~~~~~~l~~~~~~------~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~  129 (237)
                      +...+++.+..+.++      ..++|-.|||.|.++..++..|.. +-|-|+|--|+=.-.-.+......++..-.=+++
T Consensus       130 ~ykpii~~l~~lfp~~~~~r~ki~iLvPGaGlGRLa~dla~~G~~-~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh  208 (369)
T KOG2798|consen  130 LYKPIIEELNSLFPSRGKERTKIRILVPGAGLGRLAYDLACLGFK-CQGNEFSYFMLICSSFILNYCKQENQFTIYPFIH  208 (369)
T ss_pred             hhhhHHHHHHhhCCCccccccCceEEecCCCchhHHHHHHHhccc-ccccHHHHHHHHHHHHHHHhhccCCcEEEEeeee
Confidence            334455555554443      458999999999999999998765 6788888877644333332222222111111111


Q ss_pred             Ccccc---------cccccc---------------ccccccccccccccCCCCCCceeEEEEeCCh---HHHHHHHHHHh
Q 026513          130 DRTFT---------ASMNER---------------VDGVVEDLSSHKIRGISQTEKYDVVIANILL---NPLLQLADHIV  182 (237)
Q Consensus       130 ~d~~~---------~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~---~~~~~~l~~~~  182 (237)
                      .....         ...+|.               .+++++-..     .....+.||+|+....+   +.+-++++.+.
T Consensus       209 ~~sn~~~~dDQlrpi~~PD~~p~~~~~~~~~fsicaGDF~evy~-----~s~~~~~~d~VvTcfFIDTa~NileYi~tI~  283 (369)
T KOG2798|consen  209 QYSNSLSRDDQLRPISIPDIHPASSNGNTGSFSICAGDFLEVYG-----TSSGAGSYDVVVTCFFIDTAHNILEYIDTIY  283 (369)
T ss_pred             ccccccccccccccccCccccccccCCCCCCccccccceeEEec-----CcCCCCccceEEEEEEeechHHHHHHHHHHH
Confidence            10000         000000               011222210     00112369999876654   44557789999


Q ss_pred             HhcCCCeEEEE
Q 026513          183 SYAKPGAVVGI  193 (237)
Q Consensus       183 ~~L~~gG~lii  193 (237)
                      ..|+|||+.+=
T Consensus       284 ~iLk~GGvWiN  294 (369)
T KOG2798|consen  284 KILKPGGVWIN  294 (369)
T ss_pred             HhccCCcEEEe
Confidence            99999999875

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=96.75  E-value=0.0093  Score=52.09  Aligned_cols=98  Identities=15%  Similarity=0.213  Sum_probs=67.5

Q ss_pred             hccCCCeEEEEcCc-chHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccC-cccccccccccccc
Q 026513           67 LIKGGELFLDYGTG-SGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPD-RTFTASMNERVDGV  144 (237)
Q Consensus        67 ~~~~~~~vLDlG~G-~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~-d~~~~~~~~~~~~~  144 (237)
                      ..+||++|+-+|+| .|..++.+++.-..+|+++|.+++-.+.|++.-.    .      .++.. |..           
T Consensus       163 ~~~pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~lGA----d------~~i~~~~~~-----------  221 (339)
T COG1064         163 NVKPGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAKKLGA----D------HVINSSDSD-----------  221 (339)
T ss_pred             CCCCCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHhCC----c------EEEEcCCch-----------
Confidence            36789999999998 2467777887423889999999999998886622    1      12221 110           


Q ss_pred             ccccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEeccCC
Q 026513          145 VEDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILS  198 (237)
Q Consensus       145 ~~~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~~~~  198 (237)
                             .+...  .+.||+|+...+    ..-+....+.|++||.+++.++..
T Consensus       222 -------~~~~~--~~~~d~ii~tv~----~~~~~~~l~~l~~~G~~v~vG~~~  262 (339)
T COG1064         222 -------ALEAV--KEIADAIIDTVG----PATLEPSLKALRRGGTLVLVGLPG  262 (339)
T ss_pred             -------hhHHh--HhhCcEEEECCC----hhhHHHHHHHHhcCCEEEEECCCC
Confidence                   00011  224999998886    234567788999999999987763

>COG4798 Predicted methyltransferase [General function prediction only]

Probab=96.59  E-value=0.012  Score=47.20  Aligned_cols=35  Identities=14%  Similarity=0.040  Sum_probs=26.6

Q ss_pred             ccCCCeEEEEcCcchHHHHHHHHh--CCCeEEEEeCC
Q 026513           68 IKGGELFLDYGTGSGILGIAAIKF--GAAMSVGADID  102 (237)
Q Consensus        68 ~~~~~~vLDlG~G~G~~~~~la~~--~~~~v~~vD~s  102 (237)
                      +++|.+|+|+-.|.|.++..++..  +...|++.-..
T Consensus        46 lkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~   82 (238)
T COG4798          46 LKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPA   82 (238)
T ss_pred             cCCCCEEEEEecCCccHhhhhchhcCCceeEEEecch
Confidence            578999999999999999999865  22355554443

>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]

Probab=96.51  E-value=0.0086  Score=49.55  Aligned_cols=105  Identities=17%  Similarity=0.141  Sum_probs=69.1

Q ss_pred             hccCCCeEEEEcCcchHHHHHHHHh--CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccc
Q 026513           67 LIKGGELFLDYGTGSGILGIAAIKF--GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGV  144 (237)
Q Consensus        67 ~~~~~~~vLDlG~G~G~~~~~la~~--~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~  144 (237)
                      +++||.+||=+|+++|+..-..+..  +..-|+++|.|+..=...-..+++.  +    .+..+.-|+.-+.        
T Consensus       153 hikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkR--t----NiiPIiEDArhP~--------  218 (317)
T KOG1596|consen  153 HIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKR--T----NIIPIIEDARHPA--------  218 (317)
T ss_pred             eecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhcc--C----CceeeeccCCCch--------
Confidence            3689999999999999887666653  4566999999987644333222221  2    2555556654211        


Q ss_pred             ccccccccccCCCCCCceeEEEEeCChHHHHHH-HHHHhHhcCCCeEEEEe
Q 026513          145 VEDLSSHKIRGISQTEKYDVVIANILLNPLLQL-ADHIVSYAKPGAVVGIS  194 (237)
Q Consensus       145 ~~~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~-l~~~~~~L~~gG~liis  194 (237)
                             .-+.+  -+-.|+||++.+-..+..+ .-++...|++||++++|
T Consensus       219 -------KYRml--VgmVDvIFaDvaqpdq~RivaLNA~~FLk~gGhfvis  260 (317)
T KOG1596|consen  219 -------KYRML--VGMVDVIFADVAQPDQARIVALNAQYFLKNGGHFVIS  260 (317)
T ss_pred             -------heeee--eeeEEEEeccCCCchhhhhhhhhhhhhhccCCeEEEE
Confidence                   00011  2358999998876555444 45678899999999996

>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins

Probab=96.37  E-value=0.034  Score=46.64  Aligned_cols=140  Identities=11%  Similarity=0.055  Sum_probs=71.1

Q ss_pred             CCCeEEEEcCcchHHHHHHHH----h--CCCeEEEEeCCH--------------------------HHHHHHHHHHHHcC
Q 026513           70 GGELFLDYGTGSGILGIAAIK----F--GAAMSVGADIDP--------------------------QAIKSAHQNAALNN  117 (237)
Q Consensus        70 ~~~~vLDlG~G~G~~~~~la~----~--~~~~v~~vD~s~--------------------------~~i~~a~~~~~~~~  117 (237)
                      +| -++|.||-.|..++.++.    .  ..+++++.|.=+                          ...+..++++...+
T Consensus        75 pG-divE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~~~~~~s~e~V~~n~~~~g  153 (248)
T PF05711_consen   75 PG-DIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYNGYLAVSLEEVRENFARYG  153 (248)
T ss_dssp             -S-EEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCCHHCTHHHHHHHHCCCCTT
T ss_pred             Ce-EEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhcccccccCHHHHHHHHHHcC
Confidence            44 699999999976655432    2  246788888611                          12344445544444


Q ss_pred             CCCCcceEEeccCccccccccccccccccccccccccCCCCCCceeEEEEeCC-hHHHHHHHHHHhHhcCCCeEEEEecc
Q 026513          118 IGPKKMKLHLVPDRTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANIL-LNPLLQLADHIVSYAKPGAVVGISGI  196 (237)
Q Consensus       118 ~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~-~~~~~~~l~~~~~~L~~gG~liis~~  196 (237)
                      +...  ++.++.|.+.+.                 +... +..++-++.++.- +.+....+..+...|.|||++++.++
T Consensus       154 l~~~--~v~~vkG~F~dT-----------------Lp~~-p~~~IAll~lD~DlYesT~~aLe~lyprl~~GGiIi~DDY  213 (248)
T PF05711_consen  154 LLDD--NVRFVKGWFPDT-----------------LPDA-PIERIALLHLDCDLYESTKDALEFLYPRLSPGGIIIFDDY  213 (248)
T ss_dssp             TSST--TEEEEES-HHHH-----------------CCC--TT--EEEEEE---SHHHHHHHHHHHGGGEEEEEEEEESST
T ss_pred             CCcc--cEEEECCcchhh-----------------hccC-CCccEEEEEEeccchHHHHHHHHHHHhhcCCCeEEEEeCC
Confidence            4222  477888876531                 1111 2456777766653 46667889999999999999999987


Q ss_pred             CCCCHHHHHHHHhhccccceeeecCCEEEEEEEE
Q 026513          197 LSEQLPHIINRYSEFLEDILVSEMDDWTCVSGKK  230 (237)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~  230 (237)
                      .......-.+.|............=+|..+..+|
T Consensus       214 ~~~gcr~AvdeF~~~~gi~~~l~~id~~~v~w~k  247 (248)
T PF05711_consen  214 GHPGCRKAVDEFRAEHGITDPLHPIDWTGVYWRK  247 (248)
T ss_dssp             TTHHHHHHHHHHHHHTT--S--EE-SSS-EEEE-
T ss_pred             CChHHHHHHHHHHHHcCCCCccEEecCceEEEec
Confidence            6633333333333322222233344454444443

TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.

>PRK09880 L-idonate 5-dehydrogenase; Provisional

Probab=96.25  E-value=0.063  Score=46.88  Aligned_cols=98  Identities=21%  Similarity=0.214  Sum_probs=60.5

Q ss_pred             cCCCeEEEEcCcc-hHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccc
Q 026513           69 KGGELFLDYGTGS-GILGIAAIKF-GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVE  146 (237)
Q Consensus        69 ~~~~~vLDlG~G~-G~~~~~la~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  146 (237)
                      .+|.+||-.|+|. |.+++.+++. |..+|+++|.+++.++.+++.    |...   -+.....+..             
T Consensus       168 ~~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~l----Ga~~---vi~~~~~~~~-------------  227 (343)
T PRK09880        168 LQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREM----GADK---LVNPQNDDLD-------------  227 (343)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHc----CCcE---EecCCcccHH-------------
Confidence            4688999999864 5666666654 666899999999888877642    3221   0111011110             


Q ss_pred             ccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEecc
Q 026513          147 DLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGI  196 (237)
Q Consensus       147 ~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~~  196 (237)
                           .  .....+.+|+|+.....   ...+..+.+.|++||.+++.+.
T Consensus       228 -----~--~~~~~g~~D~vid~~G~---~~~~~~~~~~l~~~G~iv~~G~  267 (343)
T PRK09880        228 -----H--YKAEKGYFDVSFEVSGH---PSSINTCLEVTRAKGVMVQVGM  267 (343)
T ss_pred             -----H--HhccCCCCCEEEECCCC---HHHHHHHHHHhhcCCEEEEEcc
Confidence                 0  00112369999865432   2344667788999999998765

>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase

Probab=96.23  E-value=0.028  Score=49.11  Aligned_cols=95  Identities=15%  Similarity=0.198  Sum_probs=60.4

Q ss_pred             ccCCCeEEEEcCcc-hHHHHHHHH--hCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccc
Q 026513           68 IKGGELFLDYGTGS-GILGIAAIK--FGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGV  144 (237)
Q Consensus        68 ~~~~~~vLDlG~G~-G~~~~~la~--~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~  144 (237)
                      .++|.+||-+|||. |.+++.+++  .|..+|+++|.++.-++.+++    .+.      ...+ .+..           
T Consensus       161 ~~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~----~~~------~~~~-~~~~-----------  218 (341)
T cd08237         161 HKDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF----ADE------TYLI-DDIP-----------  218 (341)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh----cCc------eeeh-hhhh-----------
Confidence            46789999999875 556666554  356789999999988877764    111      1111 1110           


Q ss_pred             ccccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEeccC
Q 026513          145 VEDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGIL  197 (237)
Q Consensus       145 ~~~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~~~  197 (237)
                                   ....+|+|+-...-......+....++|+++|.+++.++.
T Consensus       219 -------------~~~g~d~viD~~G~~~~~~~~~~~~~~l~~~G~iv~~G~~  258 (341)
T cd08237         219 -------------EDLAVDHAFECVGGRGSQSAINQIIDYIRPQGTIGLMGVS  258 (341)
T ss_pred             -------------hccCCcEEEECCCCCccHHHHHHHHHhCcCCcEEEEEeec
Confidence                         0124899885443211234567788899999999886653

NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (

>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases

Probab=96.17  E-value=0.0066  Score=55.18  Aligned_cols=95  Identities=17%  Similarity=0.081  Sum_probs=60.8

Q ss_pred             eEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccccccccc
Q 026513           73 LFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDLSSHK  152 (237)
Q Consensus        73 ~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~  152 (237)
                      .|+|..+|.|+|+.+|...+.   ..+-.-|..-...-..+...|+-.       +..|++++.                
T Consensus       368 NVMDMnAg~GGFAAAL~~~~V---WVMNVVP~~~~ntL~vIydRGLIG-------~yhDWCE~f----------------  421 (506)
T PF03141_consen  368 NVMDMNAGYGGFAAALIDDPV---WVMNVVPVSGPNTLPVIYDRGLIG-------VYHDWCEAF----------------  421 (506)
T ss_pred             eeeeecccccHHHHHhccCCc---eEEEecccCCCCcchhhhhcccch-------hccchhhcc----------------
Confidence            699999999999999987653   332222221111222233445432       233555311                


Q ss_pred             ccCCCCCCceeEEEEeCChHHH------HHHHHHHhHhcCCCeEEEEecc
Q 026513          153 IRGISQTEKYDVVIANILLNPL------LQLADHIVSYAKPGAVVGISGI  196 (237)
Q Consensus       153 ~~~~~~~~~fD~I~~n~~~~~~------~~~l~~~~~~L~~gG~liis~~  196 (237)
                        ... ..+||+|.++..+..+      ..++-++-+.|+|+|.++|.+.
T Consensus       422 --sTY-PRTYDLlHA~~lfs~~~~rC~~~~illEmDRILRP~G~~iiRD~  468 (506)
T PF03141_consen  422 --STY-PRTYDLLHADGLFSLYKDRCEMEDILLEMDRILRPGGWVIIRDT  468 (506)
T ss_pred             --CCC-CcchhheehhhhhhhhcccccHHHHHHHhHhhcCCCceEEEecc
Confidence              122 5799999999877554      4678889999999999999643

; GO: 0008168 methyltransferase activity

>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]

Probab=95.85  E-value=0.024  Score=51.39  Aligned_cols=124  Identities=12%  Similarity=0.064  Sum_probs=80.1

Q ss_pred             CCeEEEEcCcchHHHHHHH-HhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccccc
Q 026513           71 GELFLDYGTGSGILGIAAI-KFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDLS  149 (237)
Q Consensus        71 ~~~vLDlG~G~G~~~~~la-~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~  149 (237)
                      +..+|-+|-|+|.+...+. ..+..++++++++|.+++.|+++.....-.    +..+...|...+.     .++..   
T Consensus       296 ~~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l~va~q~f~f~q~~----r~~V~i~dGl~~~-----~~~~k---  363 (482)
T KOG2352|consen  296 GGKQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEMLEVATQYFGFMQSD----RNKVHIADGLDFL-----QRTAK---  363 (482)
T ss_pred             cCcEEEEecCCCccccceeeecCccceeEEEEChhHhhccHhhhchhhhh----hhhhhHhhchHHH-----HHHhh---
Confidence            4578999999999998876 457788999999999999999886432211    1223333332110     11111   


Q ss_pred             cccccCCCCCCceeEEEEeCC------------hHHHHHHHHHHhHhcCCCeEEEEeccCCC--CHHHHHHHHhhc
Q 026513          150 SHKIRGISQTEKYDVVIANIL------------LNPLLQLADHIVSYAKPGAVVGISGILSE--QLPHIINRYSEF  211 (237)
Q Consensus       150 ~~~~~~~~~~~~fD~I~~n~~------------~~~~~~~l~~~~~~L~~gG~liis~~~~~--~~~~~~~~~~~~  211 (237)
                           .-..+..||+++.+.-            .-....++..+...|.|.|.+++..+..+  .-.++...+.+.
T Consensus       364 -----~~~~~~~~dvl~~dvds~d~~g~~~pp~~fva~~~l~~~k~~l~p~g~f~inlv~r~~~~~~~~~~~l~~v  434 (482)
T KOG2352|consen  364 -----SQQEDICPDVLMVDVDSKDSHGMQCPPPAFVAQVALQPVKMILPPRGMFIINLVTRNSSFKDEVLMNLAKV  434 (482)
T ss_pred             -----ccccccCCcEEEEECCCCCcccCcCCchHHHHHHHHHHHhhccCccceEEEEEecCCcchhHHHHHhhhhh
Confidence                 0113568999987432            11224678889999999999999766433  345666666554

>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]

Probab=95.72  E-value=0.0067  Score=53.99  Aligned_cols=68  Identities=26%  Similarity=0.369  Sum_probs=57.1

Q ss_pred             hhccCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccc
Q 026513           66 RLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTAS  136 (237)
Q Consensus        66 ~~~~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~  136 (237)
                      ..+++|..|.|+.||.|-+++.++..+ ++|++-|.++++++..+.|+..|.+...  .+.....|+..+.
T Consensus       245 g~fk~gevv~D~FaGvGPfa~Pa~kK~-crV~aNDLNpesik~Lk~ni~lNkv~~~--~iei~Nmda~~Fl  312 (495)
T KOG2078|consen  245 GLFKPGEVVCDVFAGVGPFALPAAKKG-CRVYANDLNPESIKWLKANIKLNKVDPS--AIEIFNMDAKDFL  312 (495)
T ss_pred             hccCCcchhhhhhcCcCccccchhhcC-cEEEecCCCHHHHHHHHHhccccccchh--heeeecccHHHHh
Confidence            357899999999999999999999886 7899999999999999999999988763  2556677665433

>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre

Probab=95.65  E-value=0.099  Score=40.98  Aligned_cols=112  Identities=15%  Similarity=0.012  Sum_probs=68.6

Q ss_pred             chhHHHHHHHHHhhccCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccc
Q 026513           54 HATTKLCLLLLRRLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTF  133 (237)
Q Consensus        54 ~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~  133 (237)
                      ..+...+.+.+.....++.+|+=+||=+-...+.-...+..+++..|++.+--..        +-     + .|+.-|..
T Consensus         9 ~~T~~~l~~~l~~~~~~~~~iaclstPsl~~~l~~~~~~~~~~~Lle~D~RF~~~--------~~-----~-~F~fyD~~   74 (162)
T PF10237_consen    9 DETAEFLARELLDGALDDTRIACLSTPSLYEALKKESKPRIQSFLLEYDRRFEQF--------GG-----D-EFVFYDYN   74 (162)
T ss_pred             HHHHHHHHHHHHHhcCCCCEEEEEeCcHHHHHHHhhcCCCccEEEEeecchHHhc--------CC-----c-ceEECCCC
Confidence            3455556666655445678999999877665554423456789999999965321        11     1 12233333


Q ss_pred             cccccccccccccccccccccCCCCCCceeEEEEeCCh---HHHHHHHHHHhHhcCCCeEEEEec
Q 026513          134 TASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILL---NPLLQLADHIVSYAKPGAVVGISG  195 (237)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~---~~~~~~l~~~~~~L~~gG~liis~  195 (237)
                      .+.               .+.... .++||+|+++||+   +...+....+..++++++.++++.
T Consensus        75 ~p~---------------~~~~~l-~~~~d~vv~DPPFl~~ec~~k~a~ti~~L~k~~~kii~~T  123 (162)
T PF10237_consen   75 EPE---------------ELPEEL-KGKFDVVVIDPPFLSEECLTKTAETIRLLLKPGGKIILCT  123 (162)
T ss_pred             Chh---------------hhhhhc-CCCceEEEECCCCCCHHHHHHHHHHHHHHhCccceEEEec
Confidence            211               111111 5699999999997   333455666777778988888863

This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).

>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) []

Probab=95.64  E-value=0.01  Score=42.94  Aligned_cols=32  Identities=28%  Similarity=0.324  Sum_probs=26.7

Q ss_pred             CCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCH
Q 026513           71 GELFLDYGTGSGILGIAAIKFGAAMSVGADIDP  103 (237)
Q Consensus        71 ~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~  103 (237)
                      .....|+|||+|.+.-.|.+.|.. -.|+|...
T Consensus        59 ~~~FVDlGCGNGLLV~IL~~EGy~-G~GiD~R~   90 (112)
T PF07757_consen   59 FQGFVDLGCGNGLLVYILNSEGYP-GWGIDARR   90 (112)
T ss_pred             CCceEEccCCchHHHHHHHhCCCC-cccccccc
Confidence            446999999999999999988766 67888755

; GO: 0008168 methyltransferase activity

>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1

Probab=95.57  E-value=0.071  Score=47.43  Aligned_cols=45  Identities=24%  Similarity=0.491  Sum_probs=36.5

Q ss_pred             ccCCCeEEEEcCcc-hHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHH
Q 026513           68 IKGGELFLDYGTGS-GILGIAAIKF-GAAMSVGADIDPQAIKSAHQN  112 (237)
Q Consensus        68 ~~~~~~vLDlG~G~-G~~~~~la~~-~~~~v~~vD~s~~~i~~a~~~  112 (237)
                      +.+|.+||..|||. |..+..+++. |..+++++|.++...+.+++.
T Consensus       182 ~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~  228 (386)
T cd08283         182 VKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSH  228 (386)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHc
Confidence            46788999999987 7787777765 555799999999988887764

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T

>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1

Probab=95.56  E-value=0.038  Score=40.89  Aligned_cols=92  Identities=18%  Similarity=0.269  Sum_probs=60.2

Q ss_pred             cchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccccccccccCCCCC
Q 026513           80 GSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDLSSHKIRGISQT  159 (237)
Q Consensus        80 G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (237)
                      |.|..++.+++.-..+|+++|.++..++.+++.    |...   -+.....|+.+                 .+......
T Consensus         1 ~vG~~a~q~ak~~G~~vi~~~~~~~k~~~~~~~----Ga~~---~~~~~~~~~~~-----------------~i~~~~~~   56 (130)
T PF00107_consen    1 GVGLMAIQLAKAMGAKVIATDRSEEKLELAKEL----GADH---VIDYSDDDFVE-----------------QIRELTGG   56 (130)
T ss_dssp             HHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHT----TESE---EEETTTSSHHH-----------------HHHHHTTT
T ss_pred             ChHHHHHHHHHHcCCEEEEEECCHHHHHHHHhh----cccc---ccccccccccc-----------------cccccccc
Confidence            568888888875338899999999988887653    3221   01111222110                 11223334


Q ss_pred             CceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEeccCC
Q 026513          160 EKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILS  198 (237)
Q Consensus       160 ~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~~~~  198 (237)
                      ..+|+|+-....   ...++....+++++|.+++.+...
T Consensus        57 ~~~d~vid~~g~---~~~~~~~~~~l~~~G~~v~vg~~~   92 (130)
T PF00107_consen   57 RGVDVVIDCVGS---GDTLQEAIKLLRPGGRIVVVGVYG   92 (130)
T ss_dssp             SSEEEEEESSSS---HHHHHHHHHHEEEEEEEEEESSTS
T ss_pred             ccceEEEEecCc---HHHHHHHHHHhccCCEEEEEEccC
Confidence            589999976642   346677888999999999987765

1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....

>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase

Probab=95.51  E-value=0.1  Score=44.86  Aligned_cols=89  Identities=18%  Similarity=0.148  Sum_probs=57.9

Q ss_pred             cCCCeEEEEcCcc-hHHHHHHHH-hCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccc
Q 026513           69 KGGELFLDYGTGS-GILGIAAIK-FGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVE  146 (237)
Q Consensus        69 ~~~~~vLDlG~G~-G~~~~~la~-~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  146 (237)
                      .++.++|-+|||. |.+++.+++ .|...|+++|.++..++.|+..    ..      +     |..+            
T Consensus       143 ~~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~----~~------i-----~~~~------------  195 (308)
T TIGR01202       143 VKVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGY----EV------L-----DPEK------------  195 (308)
T ss_pred             cCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhc----cc------c-----Chhh------------
Confidence            4577899999875 677777775 4777788899988776655431    10      0     1000            


Q ss_pred             ccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEeccC
Q 026513          147 DLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGIL  197 (237)
Q Consensus       147 ~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~~~  197 (237)
                              .  ....+|+|+-.....   ..++.+.++|+++|.+++.+..
T Consensus       196 --------~--~~~g~Dvvid~~G~~---~~~~~~~~~l~~~G~iv~~G~~  233 (308)
T TIGR01202       196 --------D--PRRDYRAIYDASGDP---SLIDTLVRRLAKGGEIVLAGFY  233 (308)
T ss_pred             --------c--cCCCCCEEEECCCCH---HHHHHHHHhhhcCcEEEEEeec
Confidence                    0  134689998655322   2456677889999999986653

>KOG2912 consensus Predicted DNA methylase [Function unknown]

Probab=95.51  E-value=0.016  Score=49.77  Aligned_cols=80  Identities=18%  Similarity=0.248  Sum_probs=54.2

Q ss_pred             EEEEcCcchHH-HHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccccccccc
Q 026513           74 FLDYGTGSGIL-GIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDLSSHK  152 (237)
Q Consensus        74 vLDlG~G~G~~-~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~  152 (237)
                      -+|||+|.-.+ .+.-+....-..+++|+++...+.|+.|+..++++.   .+.+++.+.-+..+.              
T Consensus       106 GiDIgtgasci~~llg~rq~n~~f~~teidd~s~~~a~snV~qn~lss---~ikvV~~~~~ktll~--------------  168 (419)
T KOG2912|consen  106 GIDIGTGASCIYPLLGARQNNWYFLATEIDDMSFNYAKSNVEQNNLSS---LIKVVKVEPQKTLLM--------------  168 (419)
T ss_pred             eeeccCchhhhHHhhhchhccceeeeeeccccccchhhcccccccccc---ceeeEEecchhhcch--------------
Confidence            58999987644 333334434668899999999999999999999876   455555543322211              


Q ss_pred             ccCCC--CCCceeEEEEeCCh
Q 026513          153 IRGIS--QTEKYDVVIANILL  171 (237)
Q Consensus       153 ~~~~~--~~~~fD~I~~n~~~  171 (237)
                       +.+.  ++..||+..||||+
T Consensus       169 -d~~~~~~e~~ydFcMcNPPF  188 (419)
T KOG2912|consen  169 -DALKEESEIIYDFCMCNPPF  188 (419)
T ss_pred             -hhhccCccceeeEEecCCch
Confidence             1221  24569999999994

>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]

Probab=95.34  E-value=0.03  Score=48.99  Aligned_cols=112  Identities=17%  Similarity=0.202  Sum_probs=71.8

Q ss_pred             CeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccccccc
Q 026513           72 ELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDLSSH  151 (237)
Q Consensus        72 ~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~  151 (237)
                      .+++|+.||.|.+.+.+...|..-+.++|+++.+++..+.|...         ..++..|..+...              
T Consensus         4 ~~~idLFsG~GG~~lGf~~agf~~~~a~Eid~~a~~ty~~n~~~---------~~~~~~di~~~~~--------------   60 (328)
T COG0270           4 MKVIDLFAGIGGLSLGFEEAGFEIVFANEIDPPAVATYKANFPH---------GDIILGDIKELDG--------------   60 (328)
T ss_pred             ceEEeeccCCchHHHHHHhcCCeEEEEEecCHHHHHHHHHhCCC---------CceeechHhhcCh--------------
Confidence            47999999999999999888888899999999999988877553         1233444432110              


Q ss_pred             cccCCCCCCceeEEEEeCChHHHH----------------HHHHHHhHhcCCCeEEEEe---ccCCC---CHHHHHHHHh
Q 026513          152 KIRGISQTEKYDVVIANILLNPLL----------------QLADHIVSYAKPGAVVGIS---GILSE---QLPHIINRYS  209 (237)
Q Consensus       152 ~~~~~~~~~~fD~I~~n~~~~~~~----------------~~l~~~~~~L~~gG~liis---~~~~~---~~~~~~~~~~  209 (237)
                        ..+. ...+|+++..+|...+.                --+.++...++| -.+++-   +++..   ....+...+.
T Consensus        61 --~~~~-~~~~DvligGpPCQ~FS~aG~r~~~~D~R~~L~~~~~r~I~~~~P-~~fv~ENV~gl~~~~~~~~~~i~~~L~  136 (328)
T COG0270          61 --EALR-KSDVDVLIGGPPCQDFSIAGKRRGYDDPRGSLFLEFIRLIEQLRP-KFFVLENVKGLLSSKGQTFDEIKKELE  136 (328)
T ss_pred             --hhcc-ccCCCEEEeCCCCcchhhcCcccCCcCccceeeHHHHHHHHhhCC-CEEEEecCchHHhcCchHHHHHHHHHH
Confidence              0111 11799999999843221                114556667788 455543   33343   4455555555


Q ss_pred             h
Q 026513          210 E  210 (237)
Q Consensus       210 ~  210 (237)
                      +
T Consensus       137 ~  137 (328)
T COG0270         137 E  137 (328)
T ss_pred             H
Confidence            4

>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known

Probab=95.32  E-value=0.38  Score=37.86  Aligned_cols=96  Identities=15%  Similarity=0.173  Sum_probs=58.1

Q ss_pred             EcCcchHHHHHHHHh-C-CCeEEEEeCCH--HHHHHH---HHHHHH---cCCCCCcceEEeccCcccccccccccccccc
Q 026513           77 YGTGSGILGIAAIKF-G-AAMSVGADIDP--QAIKSA---HQNAAL---NNIGPKKMKLHLVPDRTFTASMNERVDGVVE  146 (237)
Q Consensus        77 lG~G~G~~~~~la~~-~-~~~v~~vD~s~--~~i~~a---~~~~~~---~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  146 (237)
                      +|=|+=.|+..+++. + ...++++-++.  ...+..   ..++..   .|+.     + ....|+.+            
T Consensus         3 vGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g~~-----V-~~~VDat~------------   64 (166)
T PF10354_consen    3 VGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRELGVT-----V-LHGVDATK------------   64 (166)
T ss_pred             eeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhcCCc-----c-ccCCCCCc------------
Confidence            555666788888764 4 55666655544  333332   244332   2321     2 12345542            


Q ss_pred             ccccccccCCC--CCCceeEEEEeCCh----------------HHHHHHHHHHhHhcCCCeEEEEecc
Q 026513          147 DLSSHKIRGIS--QTEKYDVVIANILL----------------NPLLQLADHIVSYAKPGAVVGISGI  196 (237)
Q Consensus       147 ~~~~~~~~~~~--~~~~fD~I~~n~~~----------------~~~~~~l~~~~~~L~~gG~liis~~  196 (237)
                            +....  ...+||.|+.|.|-                ..+..++..+..+|+++|.+.|+-.
T Consensus        65 ------l~~~~~~~~~~FDrIiFNFPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~  126 (166)
T PF10354_consen   65 ------LHKHFRLKNQRFDRIIFNFPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLK  126 (166)
T ss_pred             ------ccccccccCCcCCEEEEeCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeC
Confidence                  11222  35789999999983                2345789999999999999999733

>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]

Probab=95.30  E-value=0.14  Score=43.90  Aligned_cols=84  Identities=19%  Similarity=0.209  Sum_probs=57.8

Q ss_pred             CCCeEEEEcCcch---HHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccc
Q 026513           70 GGELFLDYGTGSG---ILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVE  146 (237)
Q Consensus        70 ~~~~vLDlG~G~G---~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  146 (237)
                      .|+.||--|.|+|   .++..+|++|+ +++..|++++..+...+.++..|      +++....|..+..   .+..+..
T Consensus        37 ~g~~vLITGgg~GlGr~ialefa~rg~-~~vl~Din~~~~~etv~~~~~~g------~~~~y~cdis~~e---ei~~~a~  106 (300)
T KOG1201|consen   37 SGEIVLITGGGSGLGRLIALEFAKRGA-KLVLWDINKQGNEETVKEIRKIG------EAKAYTCDISDRE---EIYRLAK  106 (300)
T ss_pred             cCCEEEEeCCCchHHHHHHHHHHHhCC-eEEEEeccccchHHHHHHHHhcC------ceeEEEecCCCHH---HHHHHHH
Confidence            4789999999998   45666778876 69999999999999888888775      3667777775321   1111111


Q ss_pred             ccccccccCCCCCCceeEEEEeCC
Q 026513          147 DLSSHKIRGISQTEKYDVVIANIL  170 (237)
Q Consensus       147 ~~~~~~~~~~~~~~~fD~I~~n~~  170 (237)
                      ..       -..-+..|+++.|..
T Consensus       107 ~V-------k~e~G~V~ILVNNAG  123 (300)
T KOG1201|consen  107 KV-------KKEVGDVDILVNNAG  123 (300)
T ss_pred             HH-------HHhcCCceEEEeccc
Confidence            10       011368999999885

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=95.29  E-value=0.14  Score=47.46  Aligned_cols=116  Identities=18%  Similarity=0.259  Sum_probs=63.8

Q ss_pred             CCCeEEEEcCcc-hHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccc-cccccc
Q 026513           70 GGELFLDYGTGS-GILGIAAIKF-GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNER-VDGVVE  146 (237)
Q Consensus        70 ~~~~vLDlG~G~-G~~~~~la~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~-~~~~~~  146 (237)
                      ++.+|+-+|+|. |..++..++. |+ .|+++|.++..++.+++.    |...  +.+.....+...    +. ...+-+
T Consensus       164 pg~kVlViGaG~iGL~Ai~~Ak~lGA-~V~a~D~~~~rle~aesl----GA~~--v~i~~~e~~~~~----~gya~~~s~  232 (509)
T PRK09424        164 PPAKVLVIGAGVAGLAAIGAAGSLGA-IVRAFDTRPEVAEQVESM----GAEF--LELDFEEEGGSG----DGYAKVMSE  232 (509)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHc----CCeE--EEeccccccccc----cchhhhcch
Confidence            688999999997 7777777764 65 799999999998888752    3221  001110100000    00 000000


Q ss_pred             ccccccccCCCC-CCceeEEEEeCChHH--HHHH-HHHHhHhcCCCeEEEEecc
Q 026513          147 DLSSHKIRGISQ-TEKYDVVIANILLNP--LLQL-ADHIVSYAKPGAVVGISGI  196 (237)
Q Consensus       147 ~~~~~~~~~~~~-~~~fD~I~~n~~~~~--~~~~-l~~~~~~L~~gG~liis~~  196 (237)
                      .+.+.....+.. ...+|+||.......  ...+ .+.+.+.++|||.++..+.
T Consensus       233 ~~~~~~~~~~~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg~  286 (509)
T PRK09424        233 EFIKAEMALFAEQAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLAA  286 (509)
T ss_pred             hHHHHHHHHHHhccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEcc
Confidence            000000001111 146999998554322  1233 4889999999999887543

>TIGR00675 dcm DNA-methyltransferase (dcm)

Probab=95.28  E-value=0.032  Score=48.49  Aligned_cols=40  Identities=25%  Similarity=0.281  Sum_probs=35.9

Q ss_pred             EEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHH
Q 026513           74 FLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNA  113 (237)
Q Consensus        74 vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~  113 (237)
                      |+|+.||.|.+...+.+.|...+.++|+++.+++..+.|.
T Consensus         1 vidLF~G~GG~~~Gl~~aG~~~~~a~e~~~~a~~ty~~N~   40 (315)
T TIGR00675         1 FIDLFAGIGGIRLGFEQAGFKCVFASEIDKYAQKTYEANF   40 (315)
T ss_pred             CEEEecCccHHHHHHHHcCCeEEEEEeCCHHHHHHHHHhC
Confidence            6899999999999998888887889999999999888775

All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase

Probab=95.22  E-value=0.14  Score=45.03  Aligned_cols=103  Identities=20%  Similarity=0.229  Sum_probs=61.4

Q ss_pred             ccCCCeEEEEcCcc-hHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccc
Q 026513           68 IKGGELFLDYGTGS-GILGIAAIKF-GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVV  145 (237)
Q Consensus        68 ~~~~~~vLDlG~G~-G~~~~~la~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  145 (237)
                      +.+|.+||-.|+|. |.+++.+++. |..+|+++|.++...+.+++.    +...   -+.....+..+           
T Consensus       174 ~~~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~~----Ga~~---~i~~~~~~~~~-----------  235 (358)
T TIGR03451       174 VKRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWAREF----GATH---TVNSSGTDPVE-----------  235 (358)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHc----CCce---EEcCCCcCHHH-----------
Confidence            56789999998864 5666666664 656799999999888777542    3221   01111111110           


Q ss_pred             cccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEeccC
Q 026513          146 EDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGIL  197 (237)
Q Consensus       146 ~~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~~~  197 (237)
                            .+........+|+|+-.....   ..+......++++|++++.+..
T Consensus       236 ------~i~~~~~~~g~d~vid~~g~~---~~~~~~~~~~~~~G~iv~~G~~  278 (358)
T TIGR03451       236 ------AIRALTGGFGADVVIDAVGRP---ETYKQAFYARDLAGTVVLVGVP  278 (358)
T ss_pred             ------HHHHHhCCCCCCEEEECCCCH---HHHHHHHHHhccCCEEEEECCC
Confidence                  001112234689988544221   2345567789999999987654

Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.

>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=95.17  E-value=0.079  Score=46.35  Aligned_cols=108  Identities=19%  Similarity=0.136  Sum_probs=59.5

Q ss_pred             CCeEEEEcCcchHHHHHHHHh-C-CCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccccc
Q 026513           71 GELFLDYGTGSGILGIAAIKF-G-AAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDL  148 (237)
Q Consensus        71 ~~~vLDlG~G~G~~~~~la~~-~-~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~  148 (237)
                      .+++||+|.|+|+-..++... + ...++.++.|+..-+..... ..+-.        ....|+....+-.         
T Consensus       114 pqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl-~~nv~--------t~~td~r~s~vt~---------  175 (484)
T COG5459         114 PQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTL-AENVS--------TEKTDWRASDVTE---------  175 (484)
T ss_pred             cchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHH-Hhhcc--------cccCCCCCCccch---------
Confidence            457999999999876665532 2 35577888888554444333 32211        1112222211110         


Q ss_pred             ccccccCCCCCCceeEEEEeC-Ch-----HHHHHHHHHHhHhcCCCeEEEEeccCCC
Q 026513          149 SSHKIRGISQTEKYDVVIANI-LL-----NPLLQLADHIVSYAKPGAVVGISGILSE  199 (237)
Q Consensus       149 ~~~~~~~~~~~~~fD~I~~n~-~~-----~~~~~~l~~~~~~L~~gG~liis~~~~~  199 (237)
                         +...+.....|++++..- .+     ..+...+..+..+++|||.|+|..--+.
T Consensus       176 ---dRl~lp~ad~ytl~i~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErGtp  229 (484)
T COG5459         176 ---DRLSLPAADLYTLAIVLDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERGTP  229 (484)
T ss_pred             ---hccCCCccceeehhhhhhhhccccCcchHHHHHHHHHHhccCCCeEEEEeCCCc
Confidence               011233345677776522 11     1122367888899999999999644333

>PRK11524 putative methyltransferase; Provisional

Probab=95.16  E-value=0.03  Score=47.92  Aligned_cols=38  Identities=21%  Similarity=0.193  Sum_probs=30.8

Q ss_pred             CCCceeEEEEeCChHH-------------------HHHHHHHHhHhcCCCeEEEEec
Q 026513          158 QTEKYDVVIANILLNP-------------------LLQLADHIVSYAKPGAVVGISG  195 (237)
Q Consensus       158 ~~~~fD~I~~n~~~~~-------------------~~~~l~~~~~~L~~gG~liis~  195 (237)
                      ++++||+|++|||+..                   +..++..+.++|+|||.+++.+
T Consensus        24 ~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~~   80 (284)
T PRK11524         24 PSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIMN   80 (284)
T ss_pred             ccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEEc
Confidence            3678999999999631                   2357899999999999999863

>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3)

Probab=95.08  E-value=0.033  Score=40.49  Aligned_cols=34  Identities=24%  Similarity=0.461  Sum_probs=27.3

Q ss_pred             ceeEEEEeCCh---------HHHHHHHHHHhHhcCCCeEEEEe
Q 026513          161 KYDVVIANILL---------NPLLQLADHIVSYAKPGAVVGIS  194 (237)
Q Consensus       161 ~fD~I~~n~~~---------~~~~~~l~~~~~~L~~gG~liis  194 (237)
                      +||+|+|-.+.         ..+..+++++..+|+|||++++.
T Consensus         1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilE   43 (110)
T PF06859_consen    1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILE   43 (110)
T ss_dssp             -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEe
Confidence            59999998874         23457899999999999999994

Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.

>PRK10458 DNA cytosine methylase; Provisional

Probab=94.87  E-value=0.16  Score=46.55  Aligned_cols=43  Identities=16%  Similarity=0.185  Sum_probs=38.1

Q ss_pred             CCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHH
Q 026513           71 GELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNA  113 (237)
Q Consensus        71 ~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~  113 (237)
                      ..+++|+.||.|.+...+-..|...|.++|+++.+.+..+.|.
T Consensus        88 ~~~~iDLFsGiGGl~lGfe~aG~~~v~a~Eid~~A~~TY~~N~  130 (467)
T PRK10458         88 AFRFIDLFAGIGGIRRGFEAIGGQCVFTSEWNKHAVRTYKANW  130 (467)
T ss_pred             CceEEEeCcCccHHHHHHHHcCCEEEEEEechHHHHHHHHHHc
Confidence            4589999999999999998888888899999999988888775

>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]

Probab=94.82  E-value=0.066  Score=49.95  Aligned_cols=124  Identities=17%  Similarity=0.190  Sum_probs=75.4

Q ss_pred             hccCCCeEEEEcCcchHHHHHHHHh-C-CCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccc
Q 026513           67 LIKGGELFLDYGTGSGILGIAAIKF-G-AAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGV  144 (237)
Q Consensus        67 ~~~~~~~vLDlG~G~G~~~~~la~~-~-~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~  144 (237)
                      ++.++..|||+||-+|.....+++. | ..-|+|+|+-|--           .+.++...++-+..|.+...        
T Consensus        41 fl~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~pik-----------p~~~c~t~v~dIttd~cr~~--------  101 (780)
T KOG1098|consen   41 FLEKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVPIK-----------PIPNCDTLVEDITTDECRSK--------  101 (780)
T ss_pred             cccccchheeeccCCcHHHHHHHHhCCCCceEEEeeeeecc-----------cCCccchhhhhhhHHHHHHH--------
Confidence            3678899999999999998888864 4 3458899997721           23332111222222221110        


Q ss_pred             ccccccccccCCCCCCceeEEEEeCCh----HHH----------HHHHHHHhHhcCCCeEEEEeccCCCCHHHHHHHHhh
Q 026513          145 VEDLSSHKIRGISQTEKYDVVIANILL----NPL----------LQLADHIVSYAKPGAVVGISGILSEQLPHIINRYSE  210 (237)
Q Consensus       145 ~~~~~~~~~~~~~~~~~fD~I~~n~~~----~~~----------~~~l~~~~~~L~~gG~liis~~~~~~~~~~~~~~~~  210 (237)
                              ++.....-+.|+|+.+..-    .+.          ...+..+...|+.||.++.-.+.+++-..++..+.+
T Consensus       102 --------l~k~l~t~~advVLhDgapnVg~~w~~DA~~q~~L~l~al~LA~~~l~~~g~fvtkvfrs~dy~~ll~v~~q  173 (780)
T KOG1098|consen  102 --------LRKILKTWKADVVLHDGAPNVGGNWVQDAFQQACLTLRALKLATEFLAKGGTFVTKVFRSEDYNGLLRVFGQ  173 (780)
T ss_pred             --------HHHHHHhCCCcEEeecCCCccchhHHHHHHHhhHHHHHHHHHHHHHHHhcCccccccccCCcchHHHHHHHH
Confidence                    0011112356999886641    111          133677778999999977777888887788877776


Q ss_pred             cccccee
Q 026513          211 FLEDILV  217 (237)
Q Consensus       211 ~~~~~~~  217 (237)
                      -|.-++.
T Consensus       174 Lf~kv~~  180 (780)
T KOG1098|consen  174 LFKKVEA  180 (780)
T ss_pred             HHHHHHh
Confidence            5544433

>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2

Probab=94.80  E-value=0.061  Score=46.32  Aligned_cols=69  Identities=16%  Similarity=0.216  Sum_probs=49.8

Q ss_pred             eEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccccccccc
Q 026513           73 LFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDLSSHK  152 (237)
Q Consensus        73 ~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~  152 (237)
                      +++|+.||.|.+...+.+.|...+.++|+++.+++..+.|..           ....+|+.+....              
T Consensus         2 ~~~dlFsG~Gg~~~g~~~ag~~~~~a~e~~~~a~~~y~~N~~-----------~~~~~Di~~~~~~--------------   56 (335)
T PF00145_consen    2 KVIDLFSGIGGFSLGLEQAGFEVVWAVEIDPDACETYKANFP-----------EVICGDITEIDPS--------------   56 (335)
T ss_dssp             EEEEET-TTTHHHHHHHHTTEEEEEEEESSHHHHHHHHHHHT-----------EEEESHGGGCHHH--------------
T ss_pred             cEEEEccCccHHHHHHHhcCcEEEEEeecCHHHHHhhhhccc-----------ccccccccccccc--------------
Confidence            699999999999999999998889999999999999988865           2345666532111              


Q ss_pred             ccCCCCCCceeEEEEeCC
Q 026513          153 IRGISQTEKYDVVIANIL  170 (237)
Q Consensus       153 ~~~~~~~~~fD~I~~n~~  170 (237)
                        .+ +. .+|+++..+|
T Consensus        57 --~l-~~-~~D~l~ggpP   70 (335)
T PF00145_consen   57 --DL-PK-DVDLLIGGPP   70 (335)
T ss_dssp             --HH-HH-T-SEEEEE--
T ss_pred             --cc-cc-cceEEEeccC
Confidence              11 12 5999999988

1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=94.79  E-value=0.22  Score=44.89  Aligned_cols=90  Identities=17%  Similarity=0.192  Sum_probs=57.6

Q ss_pred             ccCCCeEEEEcCcc-hHHHHHHHH-hCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccc
Q 026513           68 IKGGELFLDYGTGS-GILGIAAIK-FGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVV  145 (237)
Q Consensus        68 ~~~~~~vLDlG~G~-G~~~~~la~-~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  145 (237)
                      ..+|++|+-+|+|. |......++ .|. +|+.+|.++...+.|+.    .|..     +  .  +..            
T Consensus       199 ~l~GktVvViG~G~IG~~va~~ak~~Ga-~ViV~d~d~~R~~~A~~----~G~~-----~--~--~~~------------  252 (413)
T cd00401         199 MIAGKVAVVAGYGDVGKGCAQSLRGQGA-RVIVTEVDPICALQAAM----EGYE-----V--M--TME------------  252 (413)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEECChhhHHHHHh----cCCE-----E--c--cHH------------
Confidence            45799999999997 555555554 455 79999999987766653    2321     1  1  100            


Q ss_pred             cccccccccCCCCCCceeEEEEeCChHHHHHHHHH-HhHhcCCCeEEEEeccC
Q 026513          146 EDLSSHKIRGISQTEKYDVVIANILLNPLLQLADH-IVSYAKPGAVVGISGIL  197 (237)
Q Consensus       146 ~~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~-~~~~L~~gG~liis~~~  197 (237)
                               ..  -..+|+|+.....   ...+.. ....+++||.++..+..
T Consensus       253 ---------e~--v~~aDVVI~atG~---~~~i~~~~l~~mk~GgilvnvG~~  291 (413)
T cd00401         253 ---------EA--VKEGDIFVTTTGN---KDIITGEHFEQMKDGAIVCNIGHF  291 (413)
T ss_pred             ---------HH--HcCCCEEEECCCC---HHHHHHHHHhcCCCCcEEEEeCCC
Confidence                     00  1357999875532   234443 47889999999887653

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein

Probab=94.74  E-value=0.45  Score=41.35  Aligned_cols=93  Identities=17%  Similarity=0.062  Sum_probs=57.9

Q ss_pred             ccCCCeEEEEcCcc-hHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccc
Q 026513           68 IKGGELFLDYGTGS-GILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVE  146 (237)
Q Consensus        68 ~~~~~~vLDlG~G~-G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  146 (237)
                      +++|.+||-.|+|. |.+++.+++....++++++.++...+.+++    .|...    +  +..+  +            
T Consensus       163 ~~~g~~VlV~G~g~iG~~a~~~a~~~G~~vi~~~~~~~~~~~a~~----~Ga~~----v--i~~~--~------------  218 (329)
T TIGR02822       163 LPPGGRLGLYGFGGSAHLTAQVALAQGATVHVMTRGAAARRLALA----LGAAS----A--GGAY--D------------  218 (329)
T ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHH----hCCce----e--cccc--c------------
Confidence            56789999999764 455556665433469999999988776654    34321    1  1100  0            


Q ss_pred             ccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEeccC
Q 026513          147 DLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGIL  197 (237)
Q Consensus       147 ~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~~~  197 (237)
                              .  ..+.+|+++.....   ...+....+.|+++|.+++.+..
T Consensus       219 --------~--~~~~~d~~i~~~~~---~~~~~~~~~~l~~~G~~v~~G~~  256 (329)
T TIGR02822       219 --------T--PPEPLDAAILFAPA---GGLVPPALEALDRGGVLAVAGIH  256 (329)
T ss_pred             --------c--CcccceEEEECCCc---HHHHHHHHHhhCCCcEEEEEecc
Confidence                    0  02357876543322   23567778899999999987653

Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.

>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase)

Probab=94.71  E-value=0.19  Score=44.33  Aligned_cols=102  Identities=14%  Similarity=0.211  Sum_probs=60.7

Q ss_pred             ccCCCeEEEEcCcc-hHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccc
Q 026513           68 IKGGELFLDYGTGS-GILGIAAIKF-GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVV  145 (237)
Q Consensus        68 ~~~~~~vLDlG~G~-G~~~~~la~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  145 (237)
                      +++|.+||-.|+|. |.++..+++. |..+|+++|.++..++.+++.    +...   -+.....+..            
T Consensus       189 i~~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~~----Ga~~---~i~~~~~~~~------------  249 (371)
T cd08281         189 VRPGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALAREL----GATA---TVNAGDPNAV------------  249 (371)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHc----CCce---EeCCCchhHH------------
Confidence            56788999999764 5566666654 665799999999888877642    3321   0111111111            


Q ss_pred             cccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEeccC
Q 026513          146 EDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGIL  197 (237)
Q Consensus       146 ~~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~~~  197 (237)
                      +     .+.... .+.+|+|+-....   ...+....+.|+++|.+++.+..
T Consensus       250 ~-----~i~~~~-~~g~d~vid~~G~---~~~~~~~~~~l~~~G~iv~~G~~  292 (371)
T cd08281         250 E-----QVRELT-GGGVDYAFEMAGS---VPALETAYEITRRGGTTVTAGLP  292 (371)
T ss_pred             H-----HHHHHh-CCCCCEEEECCCC---hHHHHHHHHHHhcCCEEEEEccC
Confidence            0     011111 2368999864422   13455667789999999876554

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd

>KOG2920 consensus Predicted methyltransferase [General function prediction only]

Probab=94.70  E-value=0.031  Score=47.36  Aligned_cols=61  Identities=21%  Similarity=0.212  Sum_probs=46.9

Q ss_pred             cccCCCCchhHHHHHHHHHhh-----ccCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHH
Q 026513           47 LAFGSGEHATTKLCLLLLRRL-----IKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIK  107 (237)
Q Consensus        47 ~~f~~g~~~~~~~~~~~l~~~-----~~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~  107 (237)
                      +.-|.-.+..+-.++..+.+.     .-.|++|||+|||+|..++.+...+...+...|++...++
T Consensus        88 yEGg~k~wecS~dl~~~l~~e~~~~~~~~~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~na~vl~  153 (282)
T KOG2920|consen   88 YEGGLKLWECSVDLLPYLKEEIGAQMSFSGKRVLELGCGAALPGIFAFVKGAVSVHFQDFNAEVLR  153 (282)
T ss_pred             eecceEEeecHHHHHHHHHHHhhhheEecCceeEecCCcccccchhhhhhccceeeeEecchhhee
Confidence            333444466666666666532     3468999999999999999999888888999999998874

>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase

Probab=94.47  E-value=0.31  Score=41.27  Aligned_cols=100  Identities=21%  Similarity=0.208  Sum_probs=59.8

Q ss_pred             cCCCeEEEEcCcc-hHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccc
Q 026513           69 KGGELFLDYGTGS-GILGIAAIKF-GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVE  146 (237)
Q Consensus        69 ~~~~~vLDlG~G~-G~~~~~la~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  146 (237)
                      .++.+||-.|+|+ |.+++.+++. |..+|+++|.++..++.+++.    +...      ++..+...        +   
T Consensus       119 ~~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~~----Ga~~------~i~~~~~~--------~---  177 (280)
T TIGR03366       119 LKGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALSF----GATA------LAEPEVLA--------E---  177 (280)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHc----CCcE------ecCchhhH--------H---
Confidence            4788999998864 5555666654 666699999999887776652    3221      11110000        0   


Q ss_pred             ccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEeccC
Q 026513          147 DLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGIL  197 (237)
Q Consensus       147 ~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~~~  197 (237)
                           .+........+|+++-...-   ...++.+...++++|.+++.+..
T Consensus       178 -----~~~~~~~~~g~d~vid~~G~---~~~~~~~~~~l~~~G~iv~~G~~  220 (280)
T TIGR03366       178 -----RQGGLQNGRGVDVALEFSGA---TAAVRACLESLDVGGTAVLAGSV  220 (280)
T ss_pred             -----HHHHHhCCCCCCEEEECCCC---hHHHHHHHHHhcCCCEEEEeccC
Confidence                 00011123468999864422   23456677889999999987654

This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.

>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species

Probab=94.47  E-value=0.075  Score=41.42  Aligned_cols=95  Identities=15%  Similarity=0.185  Sum_probs=59.0

Q ss_pred             CCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHH-HHHHHHcCCCCCcceEEeccCccccccccccccccccccc
Q 026513           71 GELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSA-HQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDLS  149 (237)
Q Consensus        71 ~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a-~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~  149 (237)
                      |++++-+|+..-.+-..+...|+.+|..+|.++--++.- +.     .++      .+...|...        ++.    
T Consensus         2 ~~~g~V~GS~~PwvEv~aL~~GA~~iltveyn~L~i~~~~~d-----r~s------si~p~df~~--------~~~----   58 (177)
T PF03269_consen    2 GKSGLVVGSMQPWVEVMALQHGAAKILTVEYNKLEIQEEFRD-----RLS------SILPVDFAK--------NWQ----   58 (177)
T ss_pred             CceEEEEecCCchhhHHHHHcCCceEEEEeecccccCccccc-----ccc------cccHHHHHH--------HHH----
Confidence            678889998877777777788999999999987332211 11     111      111222210        010    


Q ss_pred             cccccCCCCCCceeEEEEeCChHHH------------H--HHHHHHhHhcCCCeEEEEec
Q 026513          150 SHKIRGISQTEKYDVVIANILLNPL------------L--QLADHIVSYAKPGAVVGISG  195 (237)
Q Consensus       150 ~~~~~~~~~~~~fD~I~~n~~~~~~------------~--~~l~~~~~~L~~gG~liis~  195 (237)
                           ..  .++||++.|...+++.            .  +-+.++..+||+||.|+++-
T Consensus        59 -----~y--~~~fD~~as~~siEh~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~v  111 (177)
T PF03269_consen   59 -----KY--AGSFDFAASFSSIEHFGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGV  111 (177)
T ss_pred             -----Hh--hccchhhheechhccccccccCCCCCccccHHHHHHHHHhhccCCeEEEEe
Confidence                 11  4689999886654332            1  33677889999999999973

>cd08230 glucose_DH Glucose dehydrogenase

Probab=94.24  E-value=0.38  Score=42.11  Aligned_cols=97  Identities=13%  Similarity=0.116  Sum_probs=58.2

Q ss_pred             cCCCeEEEEcCcc-hHHHHHHHHhCCCeEEEEeC---CHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccc
Q 026513           69 KGGELFLDYGTGS-GILGIAAIKFGAAMSVGADI---DPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGV  144 (237)
Q Consensus        69 ~~~~~vLDlG~G~-G~~~~~la~~~~~~v~~vD~---s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~  144 (237)
                      .+|.+||-.|+|. |.++..+++....+|++++.   ++..++.+++    .+...    +.....+..           
T Consensus       171 ~~g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~~----~Ga~~----v~~~~~~~~-----------  231 (355)
T cd08230         171 WNPRRALVLGAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIVEE----LGATY----VNSSKTPVA-----------  231 (355)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHH----cCCEE----ecCCccchh-----------
Confidence            5788999999875 66777777653336999987   5666665543    23220    111001100           


Q ss_pred             ccccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEeccC
Q 026513          145 VEDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGIL  197 (237)
Q Consensus       145 ~~~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~~~  197 (237)
                                .......+|+|+-.....   ..+....+.|+++|.+++.+..
T Consensus       232 ----------~~~~~~~~d~vid~~g~~---~~~~~~~~~l~~~G~~v~~G~~  271 (355)
T cd08230         232 ----------EVKLVGEFDLIIEATGVP---PLAFEALPALAPNGVVILFGVP  271 (355)
T ss_pred             ----------hhhhcCCCCEEEECcCCH---HHHHHHHHHccCCcEEEEEecC
Confidence                      000124689988755322   2456778889999999876554

Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai

>KOG0821 consensus Predicted ribosomal RNA adenine dimethylase [RNA processing and modification]

Probab=94.17  E-value=0.23  Score=40.79  Aligned_cols=127  Identities=12%  Similarity=0.099  Sum_probs=72.5

Q ss_pred             CCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccccccc
Q 026513           71 GELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDLSS  150 (237)
Q Consensus        71 ~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~  150 (237)
                      ..-|++||.|.|+++..+...+..+...+++++..+.-.+-.......     +..+..+|+..+...+...       +
T Consensus        51 ~~~v~eIgPgpggitR~il~a~~~RL~vVE~D~RFip~LQ~L~EAa~~-----~~~IHh~D~LR~~I~~~~~-------~  118 (326)
T KOG0821|consen   51 NAYVYEIGPGPGGITRSILNADVARLLVVEKDTRFIPGLQMLSEAAPG-----KLRIHHGDVLRFKIEKAFS-------E  118 (326)
T ss_pred             cceeEEecCCCCchhHHHHhcchhheeeeeeccccChHHHHHhhcCCc-----ceEEeccccceehHHhhcc-------h
Confidence            456999999999999999999899999999999998876655553332     3556677776543332211       1


Q ss_pred             ccccCCCCCCceeEEEEeCChHHHHHH-HHHHhHh-cCCCeEEEEe-ccCCCCHHHHHHHHh
Q 026513          151 HKIRGISQTEKYDVVIANILLNPLLQL-ADHIVSY-AKPGAVVGIS-GILSEQLPHIINRYS  209 (237)
Q Consensus       151 ~~~~~~~~~~~fD~I~~n~~~~~~~~~-l~~~~~~-L~~gG~liis-~~~~~~~~~~~~~~~  209 (237)
                      ...+.+..+.+-=-|+-|.|+.....+ ++.+..+ .+.|-+.|.. +..-+.-.++...++
T Consensus       119 ~~~Rpw~d~~p~~H~IGNLPf~i~~pliik~l~~~s~r~G~~~ygrt~mTLTFQ~EVAeRlC  180 (326)
T KOG0821|consen  119 SLKRPWEDDPPNVHIIGNLPFSVSTPLIIKWLENISCRDGPFVYGRTQMTLTFQKEVAERLC  180 (326)
T ss_pred             hhcCCcccCCCceEEeccCCccccchHHHHHHhhcccccCCeeecceeeEEehHHHHHHHhc
Confidence            122233333233345557776443332 2222222 2445555543 223333344444443

>TIGR00497 hsdM type I restriction system adenine methylase (hsdM)

Probab=94.14  E-value=0.28  Score=45.41  Aligned_cols=120  Identities=21%  Similarity=0.230  Sum_probs=73.8

Q ss_pred             chhHHHHHHHHHhhc----cCCCeEEEEcCcchHHHHHHHHh---C--CCeEEEEeCCHHHHHHHHHHHHHcCCCCCcce
Q 026513           54 HATTKLCLLLLRRLI----KGGELFLDYGTGSGILGIAAIKF---G--AAMSVGADIDPQAIKSAHQNAALNNIGPKKMK  124 (237)
Q Consensus        54 ~~~~~~~~~~l~~~~----~~~~~vLDlG~G~G~~~~~la~~---~--~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~  124 (237)
                      .-+.+.+...+....    .++..+.|..||+|.+.....+.   +  ...++|.+..+.+...++.|....+.....  
T Consensus       197 ~~Tp~~Iv~l~~~~~~~~~dp~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~~~~~~t--  274 (501)
T TIGR00497       197 FFTPQDISELLARIAIGKKDTVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILHNIDYAN--  274 (501)
T ss_pred             eeCcHHHHHHHHHHhccCCCCCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHcCCCccc--
Confidence            344444444443322    24568999999999988764431   2  245899999999999999997766653211  


Q ss_pred             EEeccCccccccccccccccccccccccccCCCCCCceeEEEEeCChHHH----------------------------HH
Q 026513          125 LHLVPDRTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLNPL----------------------------LQ  176 (237)
Q Consensus       125 v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~~~~----------------------------~~  176 (237)
                      .....+|-...+                  ......+||+|++|||+...                            ..
T Consensus       275 ~~~~~~dtl~~~------------------d~~~~~~~D~v~~NpPf~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~a  336 (501)
T TIGR00497       275 FNIINADTLTTK------------------EWENENGFEVVVSNPPYSISWAGDKKSNLVSDVRFKDAGTLAPNSKADLA  336 (501)
T ss_pred             cCcccCCcCCCc------------------cccccccCCEEeecCCcccccccccccccccccchhcccCCCCCchhhHH
Confidence            122233322100                  11123569999999974210                            13


Q ss_pred             HHHHHhHhcCCCeEEEE
Q 026513          177 LADHIVSYAKPGAVVGI  193 (237)
Q Consensus       177 ~l~~~~~~L~~gG~lii  193 (237)
                      ++..+...|++||...+
T Consensus       337 fi~h~~~~L~~gG~~ai  353 (501)
T TIGR00497       337 FVLHALYVLGQEGTAAI  353 (501)
T ss_pred             HHHHHHHhcCCCCeEEE
Confidence            46778889999997544

Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).

>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like

Probab=94.02  E-value=0.41  Score=41.47  Aligned_cols=102  Identities=19%  Similarity=0.217  Sum_probs=59.2

Q ss_pred             ccCCCeEEEEcCcc-hHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccc
Q 026513           68 IKGGELFLDYGTGS-GILGIAAIKF-GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVV  145 (237)
Q Consensus        68 ~~~~~~vLDlG~G~-G~~~~~la~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  145 (237)
                      +.+|.+||-.|+|. |.++..+++. |..+|++++.++...+.+++.    +...   -+.....+ .+           
T Consensus       161 ~~~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~~----ga~~---~i~~~~~~-~~-----------  221 (339)
T cd08239         161 VSGRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELAKAL----GADF---VINSGQDD-VQ-----------  221 (339)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh----CCCE---EEcCCcch-HH-----------
Confidence            46788999998764 4555556654 555599999999887776542    3321   01110001 00           


Q ss_pred             cccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEeccC
Q 026513          146 EDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGIL  197 (237)
Q Consensus       146 ~~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~~~  197 (237)
                            .+........+|+|+-.....   ..+....+.|+++|.+++-+..
T Consensus       222 ------~~~~~~~~~~~d~vid~~g~~---~~~~~~~~~l~~~G~~v~~g~~  264 (339)
T cd08239         222 ------EIRELTSGAGADVAIECSGNT---AARRLALEAVRPWGRLVLVGEG  264 (339)
T ss_pred             ------HHHHHhCCCCCCEEEECCCCH---HHHHHHHHHhhcCCEEEEEcCC
Confidence                  011122234799998654322   2345567788999999876543

MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at

>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length

Probab=93.96  E-value=0.83  Score=37.34  Aligned_cols=101  Identities=13%  Similarity=0.155  Sum_probs=65.7

Q ss_pred             CeEEEEcCcch----HHHHHHH-HhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccc
Q 026513           72 ELFLDYGTGSG----ILGIAAI-KFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVE  146 (237)
Q Consensus        72 ~~vLDlG~G~G----~~~~~la-~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  146 (237)
                      +.+++..|+.|    ++++..| ++...++++|-.+++.+...++.+...++++   .++|+.++..+.           
T Consensus        43 kliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~~~---~vEfvvg~~~e~-----------  108 (218)
T PF07279_consen   43 KLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGLSD---VVEFVVGEAPEE-----------  108 (218)
T ss_pred             eEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhccccc---cceEEecCCHHH-----------
Confidence            46888866643    3344333 4556678999999988888888888777764   357777774321           


Q ss_pred             ccccccccCCCCCCceeEEEEeCChHHHH-HHHHHHhHhcCCCeEEEEecc
Q 026513          147 DLSSHKIRGISQTEKYDVVIANILLNPLL-QLADHIVSYAKPGAVVGISGI  196 (237)
Q Consensus       147 ~~~~~~~~~~~~~~~fD~I~~n~~~~~~~-~~l~~~~~~L~~gG~liis~~  196 (237)
                           .+..+   ...|+++.+.-...+. ++++.+.  +.|.|-+++...
T Consensus       109 -----~~~~~---~~iDF~vVDc~~~d~~~~vl~~~~--~~~~GaVVV~~N  149 (218)
T PF07279_consen  109 -----VMPGL---KGIDFVVVDCKREDFAARVLRAAK--LSPRGAVVVCYN  149 (218)
T ss_pred             -----HHhhc---cCCCEEEEeCCchhHHHHHHHHhc--cCCCceEEEEec
Confidence                 11122   4689999888666555 6666543  566777777543

The function of this family is unknown.

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=93.73  E-value=0.54  Score=34.00  Aligned_cols=89  Identities=16%  Similarity=0.131  Sum_probs=56.0

Q ss_pred             CcchHHHHHHHH---hCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccccccccccC
Q 026513           79 TGSGILGIAAIK---FGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDLSSHKIRG  155 (237)
Q Consensus        79 ~G~G~~~~~la~---~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~  155 (237)
                      ||.|.++..+++   .+...|+.+|.+++.++.+++.    +       +.++.+|..+...-               ..
T Consensus         4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~----~-------~~~i~gd~~~~~~l---------------~~   57 (116)
T PF02254_consen    4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREE----G-------VEVIYGDATDPEVL---------------ER   57 (116)
T ss_dssp             ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHT----T-------SEEEES-TTSHHHH---------------HH
T ss_pred             EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhc----c-------cccccccchhhhHH---------------hh
Confidence            455666665553   3455799999999998777643    2       44777887753211               11


Q ss_pred             CCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEe
Q 026513          156 ISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGIS  194 (237)
Q Consensus       156 ~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis  194 (237)
                      . .-.++|.+++...-....-.+....+.+.|...++..
T Consensus        58 a-~i~~a~~vv~~~~~d~~n~~~~~~~r~~~~~~~ii~~   95 (116)
T PF02254_consen   58 A-GIEKADAVVILTDDDEENLLIALLARELNPDIRIIAR   95 (116)
T ss_dssp             T-TGGCESEEEEESSSHHHHHHHHHHHHHHTTTSEEEEE
T ss_pred             c-CccccCEEEEccCCHHHHHHHHHHHHHHCCCCeEEEE
Confidence            1 1357999998776555444555566777888888774

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members

Probab=93.72  E-value=0.59  Score=40.10  Aligned_cols=101  Identities=20%  Similarity=0.246  Sum_probs=61.2

Q ss_pred             ccCCCeEEEEcCcc-hHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccc
Q 026513           68 IKGGELFLDYGTGS-GILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVE  146 (237)
Q Consensus        68 ~~~~~~vLDlG~G~-G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  146 (237)
                      +.++.+||..|+|. |..++.+++.-..+|++++.++...+.+++    .++..    +.....+...        +   
T Consensus       163 ~~~~~~vli~g~g~vG~~~~~la~~~G~~V~~~~~s~~~~~~~~~----~g~~~----~~~~~~~~~~--------~---  223 (338)
T cd08254         163 VKPGETVLVIGLGGLGLNAVQIAKAMGAAVIAVDIKEEKLELAKE----LGADE----VLNSLDDSPK--------D---  223 (338)
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHH----hCCCE----EEcCCCcCHH--------H---
Confidence            46788899988763 677777776534559999999988777654    24321    1111111000        0   


Q ss_pred             ccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEecc
Q 026513          147 DLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGI  196 (237)
Q Consensus       147 ~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~~  196 (237)
                           .+ .......+|+++.....   ...+..+.+.|+++|.++..+.
T Consensus       224 -----~~-~~~~~~~~D~vid~~g~---~~~~~~~~~~l~~~G~~v~~g~  264 (338)
T cd08254         224 -----KK-AAGLGGGFDVIFDFVGT---QPTFEDAQKAVKPGGRIVVVGL  264 (338)
T ss_pred             -----HH-HHhcCCCceEEEECCCC---HHHHHHHHHHhhcCCEEEEECC
Confidence                 00 11224579999865422   2355677889999999987644

This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio

>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional

Probab=93.66  E-value=0.53  Score=40.97  Aligned_cols=104  Identities=19%  Similarity=0.231  Sum_probs=58.9

Q ss_pred             ccCCCeEEEEcCcc-hHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccc
Q 026513           68 IKGGELFLDYGTGS-GILGIAAIKF-GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVV  145 (237)
Q Consensus        68 ~~~~~~vLDlG~G~-G~~~~~la~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  145 (237)
                      ..+|.+||-.|+|+ |.+++.+++. |...|++++.++...+.+++    .+...   -+.....+ ..           
T Consensus       158 ~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~----~Ga~~---~i~~~~~~-~~-----------  218 (347)
T PRK10309        158 GCEGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINSEKLALAKS----LGAMQ---TFNSREMS-AP-----------  218 (347)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHH----cCCce---EecCcccC-HH-----------
Confidence            45788999998865 5555666654 66668999999988776643    23221   01100001 00           


Q ss_pred             cccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEeccCC
Q 026513          146 EDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILS  198 (237)
Q Consensus       146 ~~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~~~~  198 (237)
                            .+........+|.++.+..-.  ...+....+.|++||.+++.++..
T Consensus       219 ------~~~~~~~~~~~d~~v~d~~G~--~~~~~~~~~~l~~~G~iv~~G~~~  263 (347)
T PRK10309        219 ------QIQSVLRELRFDQLILETAGV--PQTVELAIEIAGPRAQLALVGTLH  263 (347)
T ss_pred             ------HHHHHhcCCCCCeEEEECCCC--HHHHHHHHHHhhcCCEEEEEccCC
Confidence                  001111234677333333222  235566778899999999876643

>PRK13699 putative methylase; Provisional

Probab=93.57  E-value=0.23  Score=41.16  Aligned_cols=37  Identities=11%  Similarity=0.033  Sum_probs=30.4

Q ss_pred             CCCceeEEEEeCChH------------------HHHHHHHHHhHhcCCCeEEEEe
Q 026513          158 QTEKYDVVIANILLN------------------PLLQLADHIVSYAKPGAVVGIS  194 (237)
Q Consensus       158 ~~~~fD~I~~n~~~~------------------~~~~~l~~~~~~L~~gG~liis  194 (237)
                      +++++|+|+.+||+.                  .+...+.++.++|||||.+++-
T Consensus        17 pd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~if   71 (227)
T PRK13699         17 PDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVSF   71 (227)
T ss_pred             CccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence            478999999999973                  2346788999999999999874

>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed

Probab=93.42  E-value=0.58  Score=44.88  Aligned_cols=35  Identities=17%  Similarity=0.159  Sum_probs=27.4

Q ss_pred             CceeEEEEeCCh------HHHHHHHHHHhHhcCCCeEEEEe
Q 026513          160 EKYDVVIANILL------NPLLQLADHIVSYAKPGAVVGIS  194 (237)
Q Consensus       160 ~~fD~I~~n~~~------~~~~~~l~~~~~~L~~gG~liis  194 (237)
                      ..+|+++.++.-      -+..+++..+.++++|||.+..-
T Consensus       165 ~~~d~~~lD~FsP~~np~~W~~~~~~~l~~~~~~~~~~~t~  205 (662)
T PRK01747        165 ARADAWFLDGFAPAKNPDMWSPNLFNALARLARPGATLATF  205 (662)
T ss_pred             ccccEEEeCCCCCccChhhccHHHHHHHHHHhCCCCEEEEe
Confidence            469999998632      23357899999999999999863

>PLN02740 Alcohol dehydrogenase-like

Probab=93.25  E-value=0.59  Score=41.45  Aligned_cols=102  Identities=17%  Similarity=0.262  Sum_probs=59.8

Q ss_pred             ccCCCeEEEEcCcc-hHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEecc--Cccccccccccccc
Q 026513           68 IKGGELFLDYGTGS-GILGIAAIKF-GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVP--DRTFTASMNERVDG  143 (237)
Q Consensus        68 ~~~~~~vLDlG~G~-G~~~~~la~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~--~d~~~~~~~~~~~~  143 (237)
                      +++|.+||-.|+|. |..++.+++. |..+|+++|.++..++.+++    .+...   -+....  .++.+         
T Consensus       196 ~~~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~----~Ga~~---~i~~~~~~~~~~~---------  259 (381)
T PLN02740        196 VQAGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKE----MGITD---FINPKDSDKPVHE---------  259 (381)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHH----cCCcE---EEecccccchHHH---------
Confidence            57789999999864 5566666654 66579999999988887754    23221   011100  00100         


Q ss_pred             cccccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCC-eEEEEeccC
Q 026513          144 VVEDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPG-AVVGISGIL  197 (237)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~g-G~liis~~~  197 (237)
                              .+.... .+.+|+|+-...-.   ..+......+++| |.+++.+..
T Consensus       260 --------~v~~~~-~~g~dvvid~~G~~---~~~~~a~~~~~~g~G~~v~~G~~  302 (381)
T PLN02740        260 --------RIREMT-GGGVDYSFECAGNV---EVLREAFLSTHDGWGLTVLLGIH  302 (381)
T ss_pred             --------HHHHHh-CCCCCEEEECCCCh---HHHHHHHHhhhcCCCEEEEEccC
Confidence                    001111 12699998655321   3445566678886 888876654

>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases

Probab=92.95  E-value=0.81  Score=39.86  Aligned_cols=104  Identities=17%  Similarity=0.268  Sum_probs=61.2

Q ss_pred             ccCCCeEEEEcCcc-hHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccc
Q 026513           68 IKGGELFLDYGTGS-GILGIAAIKF-GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVV  145 (237)
Q Consensus        68 ~~~~~~vLDlG~G~-G~~~~~la~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  145 (237)
                      ++++.+||-.|+|. |..++.+++. |...++++|.++...+.+++    .+...   -+.....+...           
T Consensus       164 ~~~g~~vlI~g~g~iG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~----~g~~~---~v~~~~~~~~~-----------  225 (351)
T cd08285         164 IKLGDTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRPNRVELAKE----YGATD---IVDYKNGDVVE-----------  225 (351)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH----cCCce---EecCCCCCHHH-----------
Confidence            56788999998763 5555566654 66679999999987777664    23321   01111111110           


Q ss_pred             cccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEeccCC
Q 026513          146 EDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILS  198 (237)
Q Consensus       146 ~~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~~~~  198 (237)
                            .+........+|+++......   ..+..+.+.|+++|.++..+...
T Consensus       226 ------~i~~~~~~~~~d~vld~~g~~---~~~~~~~~~l~~~G~~v~~g~~~  269 (351)
T cd08285         226 ------QILKLTGGKGVDAVIIAGGGQ---DTFEQALKVLKPGGTISNVNYYG  269 (351)
T ss_pred             ------HHHHHhCCCCCcEEEECCCCH---HHHHHHHHHhhcCCEEEEecccC
Confidence                  011112234699998654321   34567778899999998755543

This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>COG4301 Uncharacterized conserved protein [Function unknown]

Probab=92.83  E-value=5.2  Score=33.69  Aligned_cols=108  Identities=9%  Similarity=0.074  Sum_probs=67.1

Q ss_pred             cCCCeEEEEcCcchHHHHHHHH----hC-CCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccc
Q 026513           69 KGGELFLDYGTGSGILGIAAIK----FG-AAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDG  143 (237)
Q Consensus        69 ~~~~~vLDlG~G~G~~~~~la~----~~-~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~  143 (237)
                      ..+...+|+|+|+..-+..+..    .+ ..+++.+|+|...++...+.+...-.   .+.+.-+++|...+.       
T Consensus        77 ~g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~---~l~v~~l~~~~~~~L-------  146 (321)
T COG4301          77 TGACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYP---GLEVNALCGDYELAL-------  146 (321)
T ss_pred             hCcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCC---CCeEeehhhhHHHHH-------
Confidence            3467899999999977766543    32 36799999999998864444332221   124666777765321       


Q ss_pred             cccccccccccCCCCCCceeEE-EEeC-----ChHHHHHHHHHHhHhcCCCeEEEEeccC
Q 026513          144 VVEDLSSHKIRGISQTEKYDVV-IANI-----LLNPLLQLADHIVSYAKPGAVVGISGIL  197 (237)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~fD~I-~~n~-----~~~~~~~~l~~~~~~L~~gG~liis~~~  197 (237)
                                ..+. ...--++ +...     .-..-..++..+...++||-++++..-+
T Consensus       147 ----------a~~~-~~~~Rl~~flGStlGN~tp~e~~~Fl~~l~~a~~pGd~~LlGvDl  195 (321)
T COG4301         147 ----------AELP-RGGRRLFVFLGSTLGNLTPGECAVFLTQLRGALRPGDYFLLGVDL  195 (321)
T ss_pred             ----------hccc-CCCeEEEEEecccccCCChHHHHHHHHHHHhcCCCcceEEEeccc
Confidence                      1222 2222222 2222     2233456889999999999999996433

>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]

Probab=92.73  E-value=0.34  Score=44.64  Aligned_cols=130  Identities=14%  Similarity=0.187  Sum_probs=80.7

Q ss_pred             hHHHHHHHHHhhccC-----CCeEEEEcCcchHHHHHHH---HhC--CCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceE
Q 026513           56 TTKLCLLLLRRLIKG-----GELFLDYGTGSGILGIAAI---KFG--AAMSVGADIDPQAIKSAHQNAALNNIGPKKMKL  125 (237)
Q Consensus        56 ~~~~~~~~l~~~~~~-----~~~vLDlG~G~G~~~~~la---~~~--~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v  125 (237)
                      ..+.+..+|..+.+.     -.++.-+|.|.|-++.+..   ...  --+++++|-+|.++-..+. .......+   ++
T Consensus       348 Yq~Ai~~AL~Drvpd~~a~~~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~-~n~~~W~~---~V  423 (649)
T KOG0822|consen  348 YQQAILKALLDRVPDESAKTTTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQN-RNFECWDN---RV  423 (649)
T ss_pred             HHHHHHHHHHhhCcccccCceEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhh-hchhhhcC---ee
Confidence            444555555443222     2368899999997765433   222  2358899999999876654 33334444   58


Q ss_pred             EeccCccccccccccccccccccccccccCCCC-CCceeEEEEeCC--h---HHHHHHHHHHhHhcCCCeEEEEecc---
Q 026513          126 HLVPDRTFTASMNERVDGVVEDLSSHKIRGISQ-TEKYDVVIANIL--L---NPLLQLADHIVSYAKPGAVVGISGI---  196 (237)
Q Consensus       126 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~fD~I~~n~~--~---~~~~~~l~~~~~~L~~gG~liis~~---  196 (237)
                      .++..|++                     .+.+ .++.|++++-..  +   +...+.++-+.+.|||+|+-|=+.+   
T Consensus       424 tii~~DMR---------------------~w~ap~eq~DI~VSELLGSFGDNELSPECLDG~q~fLkpdgIsIP~sYtSy  482 (649)
T KOG0822|consen  424 TIISSDMR---------------------KWNAPREQADIIVSELLGSFGDNELSPECLDGAQKFLKPDGISIPSSYTSY  482 (649)
T ss_pred             EEEecccc---------------------ccCCchhhccchHHHhhccccCccCCHHHHHHHHhhcCCCceEccchhhhh
Confidence            88888876                     4433 378999986331  1   2235778889999999988765422   


Q ss_pred             -CCCCHHHHHHHHhh
Q 026513          197 -LSEQLPHIINRYSE  210 (237)
Q Consensus       197 -~~~~~~~~~~~~~~  210 (237)
                       ..-.+..+.+.+++
T Consensus       483 i~PImS~~l~q~v~a  497 (649)
T KOG0822|consen  483 IAPIMSPKLYQEVKA  497 (649)
T ss_pred             hcccccHHHHHHHHh
Confidence             22234455555553

>COG1565 Uncharacterized conserved protein [Function unknown]

Probab=92.55  E-value=0.67  Score=40.86  Aligned_cols=46  Identities=13%  Similarity=0.151  Sum_probs=35.6

Q ss_pred             CCeEEEEcCcchHHHHHHHHh---------CCCeEEEEeCCHHHHHHHHHHHHHc
Q 026513           71 GELFLDYGTGSGILGIAAIKF---------GAAMSVGADIDPQAIKSAHQNAALN  116 (237)
Q Consensus        71 ~~~vLDlG~G~G~~~~~la~~---------~~~~v~~vD~s~~~i~~a~~~~~~~  116 (237)
                      ...++|+|.|.|.++.-+.+.         ...++..+|+|++..+.-++++..-
T Consensus        78 ~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~~  132 (370)
T COG1565          78 PLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKAT  132 (370)
T ss_pred             CceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhcc
Confidence            457999999999988755431         2568999999999888777776643

>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=92.50  E-value=0.89  Score=37.37  Aligned_cols=100  Identities=20%  Similarity=0.261  Sum_probs=59.8

Q ss_pred             cCCCeEEEEcCcc-hHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccc
Q 026513           69 KGGELFLDYGTGS-GILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVED  147 (237)
Q Consensus        69 ~~~~~vLDlG~G~-G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  147 (237)
                      .++.+||..|+|+ |.....+++....++++++.++...+.+++.    +...   -+.....+..            . 
T Consensus       133 ~~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~----g~~~---~~~~~~~~~~------------~-  192 (271)
T cd05188         133 KPGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSDEKLELAKEL----GADH---VIDYKEEDLE------------E-  192 (271)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHh----CCce---eccCCcCCHH------------H-
Confidence            6788999999986 5566666655447799999998777666432    2211   0110001100            0 


Q ss_pred             cccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEecc
Q 026513          148 LSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGI  196 (237)
Q Consensus       148 ~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~~  196 (237)
                          .+. ....+.+|+++.+....   ..+..+.+.|+++|.++..+.
T Consensus       193 ----~~~-~~~~~~~d~vi~~~~~~---~~~~~~~~~l~~~G~~v~~~~  233 (271)
T cd05188         193 ----ELR-LTGGGGADVVIDAVGGP---ETLAQALRLLRPGGRIVVVGG  233 (271)
T ss_pred             ----HHH-HhcCCCCCEEEECCCCH---HHHHHHHHhcccCCEEEEEcc
Confidence                000 11245799999765431   344566778899999987543

The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro

>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase

Probab=92.37  E-value=0.76  Score=41.27  Aligned_cols=45  Identities=24%  Similarity=0.364  Sum_probs=34.4

Q ss_pred             ccCCCeEEEEc-Cc-chHHHHHHHHh---CCCeEEEEeCCHHHHHHHHHH
Q 026513           68 IKGGELFLDYG-TG-SGILGIAAIKF---GAAMSVGADIDPQAIKSAHQN  112 (237)
Q Consensus        68 ~~~~~~vLDlG-~G-~G~~~~~la~~---~~~~v~~vD~s~~~i~~a~~~  112 (237)
                      +++|.+|+-+| +| .|..++.+++.   |..+|+++|.++..++.+++.
T Consensus       173 ~~~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~~  222 (410)
T cd08238         173 IKPGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRL  222 (410)
T ss_pred             CCCCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHHh
Confidence            46788899887 45 47777777764   345799999999999888764

L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found

>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown

Probab=92.30  E-value=1.5  Score=32.75  Aligned_cols=93  Identities=18%  Similarity=0.182  Sum_probs=51.0

Q ss_pred             CCeEEEEcCcch-HHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccccc
Q 026513           71 GELFLDYGTGSG-ILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDLS  149 (237)
Q Consensus        71 ~~~vLDlG~G~G-~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~  149 (237)
                      ..+++|+|-|.= ..+..|...| ..|+++|+.+.       ++. .|       +.++..|++++.+.           
T Consensus        14 ~~kiVEVGiG~~~~vA~~L~~~G-~dV~~tDi~~~-------~a~-~g-------~~~v~DDif~P~l~-----------   66 (127)
T PF03686_consen   14 YGKIVEVGIGFNPEVAKKLKERG-FDVIATDINPR-------KAP-EG-------VNFVVDDIFNPNLE-----------   66 (127)
T ss_dssp             SSEEEEET-TT--HHHHHHHHHS--EEEEE-SS-S------------S-------TTEE---SSS--HH-----------
T ss_pred             CCcEEEECcCCCHHHHHHHHHcC-CcEEEEECccc-------ccc-cC-------cceeeecccCCCHH-----------
Confidence            349999999975 4556677777 56999999997       222 33       44778888864321           


Q ss_pred             cccccCCCCCCceeEEEE-eCChHHHHHHHHHHhHhcCCCeEEEEeccCCCCH
Q 026513          150 SHKIRGISQTEKYDVVIA-NILLNPLLQLADHIVSYAKPGAVVGISGILSEQL  201 (237)
Q Consensus       150 ~~~~~~~~~~~~fD~I~~-n~~~~~~~~~l~~~~~~L~~gG~liis~~~~~~~  201 (237)
                           .   =...|+|++ +||.+....+++-..   +-|.-+++..+..+..
T Consensus        67 -----i---Y~~a~lIYSiRPP~El~~~il~lA~---~v~adlii~pL~~e~~  108 (127)
T PF03686_consen   67 -----I---YEGADLIYSIRPPPELQPPILELAK---KVGADLIIRPLGGESP  108 (127)
T ss_dssp             -----H---HTTEEEEEEES--TTSHHHHHHHHH---HHT-EEEEE-BTTB--
T ss_pred             -----H---hcCCcEEEEeCCChHHhHHHHHHHH---HhCCCEEEECCCCCCC
Confidence                 1   146899998 787776666655544   4477788876665544

; PDB: 2K4M_A.

>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]

Probab=92.20  E-value=0.54  Score=41.67  Aligned_cols=42  Identities=17%  Similarity=0.124  Sum_probs=34.9

Q ss_pred             CCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHH
Q 026513           70 GGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQ  111 (237)
Q Consensus        70 ~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~  111 (237)
                      +-..|+|+|.|.|.++..++-...-.|.+||.|....+.|++
T Consensus       153 gi~~vvD~GaG~G~LSr~lSl~y~lsV~aIegsq~~~~ra~r  194 (476)
T KOG2651|consen  153 GIDQVVDVGAGQGHLSRFLSLGYGLSVKAIEGSQRLVERAQR  194 (476)
T ss_pred             CCCeeEEcCCCchHHHHHHhhccCceEEEeccchHHHHHHHH
Confidence            456899999999999999986545669999999888777665

>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional

Probab=92.17  E-value=7.7  Score=34.71  Aligned_cols=110  Identities=14%  Similarity=0.060  Sum_probs=69.5

Q ss_pred             HHHHHHHHHhhccCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccc
Q 026513           57 TKLCLLLLRRLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTAS  136 (237)
Q Consensus        57 ~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~  136 (237)
                      ...++..+......+ +|+-++=.-|.++..++..+..   .+=-|--.-...+.|+..|++....  +.+....     
T Consensus        32 de~ll~~~~~~~~~~-~~~i~nd~fGal~~~l~~~~~~---~~~ds~~~~~~~~~n~~~n~~~~~~--~~~~~~~-----  100 (378)
T PRK15001         32 DEYLLQQLDDTEIRG-PVLILNDAFGALSCALAEHKPY---SIGDSYISELATRENLRLNGIDESS--VKFLDST-----  100 (378)
T ss_pred             HHHHHHHHhhcccCC-CEEEEcCchhHHHHHHHhCCCC---eeehHHHHHHHHHHHHHHcCCCccc--ceeeccc-----
Confidence            345555554432223 7999999999999999865332   2211222234577899999876422  2222111     


Q ss_pred             ccccccccccccccccccCCCCCCceeEEEEeCCh--HHHHHHHHHHhHhcCCCeEEEEecc
Q 026513          137 MNERVDGVVEDLSSHKIRGISQTEKYDVVIANILL--NPLLQLADHIVSYAKPGAVVGISGI  196 (237)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~--~~~~~~l~~~~~~L~~gG~liis~~  196 (237)
                                       ..+  .+.+|+|+.-.|-  ..+...+..+...|+||+.++..+-
T Consensus       101 -----------------~~~--~~~~d~vl~~~PK~~~~l~~~l~~l~~~l~~~~~ii~g~~  143 (378)
T PRK15001        101 -----------------ADY--PQQPGVVLIKVPKTLALLEQQLRALRKVVTSDTRIIAGAK  143 (378)
T ss_pred             -----------------ccc--cCCCCEEEEEeCCCHHHHHHHHHHHHhhCCCCCEEEEEEe
Confidence                             011  3469999987773  4556678889999999999887544

>PLN02827 Alcohol dehydrogenase-like

Probab=92.12  E-value=0.89  Score=40.37  Aligned_cols=102  Identities=17%  Similarity=0.207  Sum_probs=59.0

Q ss_pred             ccCCCeEEEEcCcc-hHHHHHHHH-hCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccC--ccccccccccccc
Q 026513           68 IKGGELFLDYGTGS-GILGIAAIK-FGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPD--RTFTASMNERVDG  143 (237)
Q Consensus        68 ~~~~~~vLDlG~G~-G~~~~~la~-~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~--d~~~~~~~~~~~~  143 (237)
                      +.+|.+||-.|+|. |.+++.+++ .|...|+++|.++...+.|++    .+...   -+.....  ++.         +
T Consensus       191 ~~~g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~~~~~~~~a~~----lGa~~---~i~~~~~~~~~~---------~  254 (378)
T PLN02827        191 VSKGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPEKAEKAKT----FGVTD---FINPNDLSEPIQ---------Q  254 (378)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHH----cCCcE---EEcccccchHHH---------H
Confidence            56789999998764 555566665 466679999999887776643    24321   0110000  110         0


Q ss_pred             cccccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCC-eEEEEeccC
Q 026513          144 VVEDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPG-AVVGISGIL  197 (237)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~g-G~liis~~~  197 (237)
                              .+.... .+.+|+|+-....   ...+.....++++| |.+++-+..
T Consensus       255 --------~v~~~~-~~g~d~vid~~G~---~~~~~~~l~~l~~g~G~iv~~G~~  297 (378)
T PLN02827        255 --------VIKRMT-GGGADYSFECVGD---TGIATTALQSCSDGWGLTVTLGVP  297 (378)
T ss_pred             --------HHHHHh-CCCCCEEEECCCC---hHHHHHHHHhhccCCCEEEEECCc
Confidence                    001111 2268999864432   12345667788998 999876543

>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase

Probab=91.98  E-value=0.62  Score=40.69  Aligned_cols=44  Identities=30%  Similarity=0.444  Sum_probs=33.2

Q ss_pred             ccCCCeEEEEcCcc-hHHHHHHHHhCCCeEEEEeCCHHHHHHHHH
Q 026513           68 IKGGELFLDYGTGS-GILGIAAIKFGAAMSVGADIDPQAIKSAHQ  111 (237)
Q Consensus        68 ~~~~~~vLDlG~G~-G~~~~~la~~~~~~v~~vD~s~~~i~~a~~  111 (237)
                      +.+|.+||-.|+|. |..++.+++....+++++|.++..++.+++
T Consensus       164 ~~~g~~VlV~G~G~vG~~a~~~a~~~G~~vi~~~~~~~~~~~~~~  208 (349)
T TIGR03201       164 LKKGDLVIVIGAGGVGGYMVQTAKAMGAAVVAIDIDPEKLEMMKG  208 (349)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHH
Confidence            46789999999965 666666666533469999999988877754

Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.

>COG0863 DNA modification methylase [DNA replication, recombination, and repair]

Probab=91.92  E-value=0.79  Score=39.01  Aligned_cols=58  Identities=31%  Similarity=0.421  Sum_probs=46.4

Q ss_pred             HHHHHHHHhhccCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHc
Q 026513           58 KLCLLLLRRLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALN  116 (237)
Q Consensus        58 ~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~  116 (237)
                      .++.+.++....++..|||..+|+|+.++.+.+.+ ..++|+|+++..++.+.+.+...
T Consensus       210 ~l~~r~i~~~s~~~diVlDpf~GsGtt~~aa~~~~-r~~ig~e~~~~y~~~~~~r~~~~  267 (302)
T COG0863         210 ALIERLIRDYSFPGDIVLDPFAGSGTTGIAAKNLG-RRFIGIEINPEYVEVALKRLQEG  267 (302)
T ss_pred             HHHHHHHHhcCCCCCEEeecCCCCChHHHHHHHcC-CceEEEecCHHHHHHHHHHHHhh
Confidence            34444444455689999999999999998888774 45899999999999999887654

>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1

Probab=91.64  E-value=1.1  Score=37.78  Aligned_cols=78  Identities=26%  Similarity=0.382  Sum_probs=49.6

Q ss_pred             HHHHHHHhC-CCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccccccccccCCCCCCce
Q 026513           84 LGIAAIKFG-AAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDLSSHKIRGISQTEKY  162 (237)
Q Consensus        84 ~~~~la~~~-~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f  162 (237)
                      ++..+.+.| ..+|+|.|.++..++.|++.    |+..   ... ...+.                          -..+
T Consensus         1 ~A~aL~~~g~~~~v~g~d~~~~~~~~a~~~----g~~~---~~~-~~~~~--------------------------~~~~   46 (258)
T PF02153_consen    1 IALALRKAGPDVEVYGYDRDPETLEAALEL----GIID---EAS-TDIEA--------------------------VEDA   46 (258)
T ss_dssp             HHHHHHHTTTTSEEEEE-SSHHHHHHHHHT----TSSS---EEE-SHHHH--------------------------GGCC
T ss_pred             ChHHHHhCCCCeEEEEEeCCHHHHHHHHHC----CCee---ecc-CCHhH--------------------------hcCC
Confidence            345666665 57899999999988777533    4432   111 00111                          1357


Q ss_pred             eEEEEeCChHHHHHHHHHHhHhcCCCeEEEEec
Q 026513          163 DVVIANILLNPLLQLADHIVSYAKPGAVVGISG  195 (237)
Q Consensus       163 D~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~  195 (237)
                      |+|+...|...+.+++..+...+++|+.+.=.+
T Consensus        47 DlvvlavP~~~~~~~l~~~~~~~~~~~iv~Dv~   79 (258)
T PF02153_consen   47 DLVVLAVPVSAIEDVLEEIAPYLKPGAIVTDVG   79 (258)
T ss_dssp             SEEEE-S-HHHHHHHHHHHHCGS-TTSEEEE--
T ss_pred             CEEEEcCCHHHHHHHHHHhhhhcCCCcEEEEeC
Confidence            999999999999999999999999987766443

3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.

>PRK05708 2-dehydropantoate 2-reductase; Provisional

Probab=91.41  E-value=3.5  Score=35.52  Aligned_cols=113  Identities=12%  Similarity=0.015  Sum_probs=65.4

Q ss_pred             CeEEEEcCcc--hHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccccc
Q 026513           72 ELFLDYGTGS--GILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDLS  149 (237)
Q Consensus        72 ~~vLDlG~G~--G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~  149 (237)
                      .+|+-+|+|.  |.++..|++.|. .|+.++-++..++..++.   .|+.     +. ..++.....+.           
T Consensus         3 m~I~IiGaGaiG~~~a~~L~~~G~-~V~lv~r~~~~~~~i~~~---~Gl~-----i~-~~g~~~~~~~~-----------   61 (305)
T PRK05708          3 MTWHILGAGSLGSLWACRLARAGL-PVRLILRDRQRLAAYQQA---GGLT-----LV-EQGQASLYAIP-----------   61 (305)
T ss_pred             ceEEEECCCHHHHHHHHHHHhCCC-CeEEEEechHHHHHHhhc---CCeE-----Ee-eCCcceeeccC-----------
Confidence            4689999996  466777777764 588898887555544431   1221     11 01110000000           


Q ss_pred             cccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEeccCCCCHHHHHHHH
Q 026513          150 SHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILSEQLPHIINRY  208 (237)
Q Consensus       150 ~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~~~~~~~~~~~~~~  208 (237)
                         .......++||+|+...=.....+.++.+..++.++..++....--...+.+...+
T Consensus        62 ---~~~~~~~~~~D~viv~vK~~~~~~al~~l~~~l~~~t~vv~lQNGv~~~e~l~~~~  117 (305)
T PRK05708         62 ---AETADAAEPIHRLLLACKAYDAEPAVASLAHRLAPGAELLLLQNGLGSQDAVAARV  117 (305)
T ss_pred             ---CCCcccccccCEEEEECCHHhHHHHHHHHHhhCCCCCEEEEEeCCCCCHHHHHHhC
Confidence               00001135899998866555667788899999999998777544333444455544

>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases

Probab=91.41  E-value=1.9  Score=32.84  Aligned_cols=83  Identities=18%  Similarity=0.216  Sum_probs=51.3

Q ss_pred             eEEEEcCcch---HHHHHHHHhCCCeEEEEeCC--HHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccc
Q 026513           73 LFLDYGTGSG---ILGIAAIKFGAAMSVGADID--PQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVED  147 (237)
Q Consensus        73 ~vLDlG~G~G---~~~~~la~~~~~~v~~vD~s--~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  147 (237)
                      ++|-.|+++|   .++..+++.|..+|+.+.-+  ....+.....+...+ .    ++.+++.|..+.   +.+.++++.
T Consensus         2 ~~lItGa~~giG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~l~~~l~~~~-~----~~~~~~~D~~~~---~~~~~~~~~   73 (167)
T PF00106_consen    2 TVLITGASSGIGRALARALARRGARVVILTSRSEDSEGAQELIQELKAPG-A----KITFIECDLSDP---ESIRALIEE   73 (167)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHTT-S----EEEEEESETTSH---HHHHHHHHH
T ss_pred             EEEEECCCCHHHHHHHHHHHhcCceEEEEeeecccccccccccccccccc-c----cccccccccccc---ccccccccc
Confidence            5777887766   34455566678889999988  555555555555444 2    488888887642   223333333


Q ss_pred             cccccccCCCCCCceeEEEEeCC
Q 026513          148 LSSHKIRGISQTEKYDVVIANIL  170 (237)
Q Consensus       148 ~~~~~~~~~~~~~~fD~I~~n~~  170 (237)
                      ..       ...++.|+++++..
T Consensus        74 ~~-------~~~~~ld~li~~ag   89 (167)
T PF00106_consen   74 VI-------KRFGPLDILINNAG   89 (167)
T ss_dssp             HH-------HHHSSESEEEEECS
T ss_pred             cc-------cccccccccccccc
Confidence            21       11368999998775

As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....

>COG1255 Uncharacterized protein conserved in archaea [Function unknown]

Probab=91.25  E-value=2.8  Score=30.84  Aligned_cols=94  Identities=18%  Similarity=0.165  Sum_probs=61.6

Q ss_pred             cCCCeEEEEcCcch-HHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccc
Q 026513           69 KGGELFLDYGTGSG-ILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVED  147 (237)
Q Consensus        69 ~~~~~vLDlG~G~G-~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  147 (237)
                      .+| +|.++|-|-= ..+..++++|.. ++++|+++.       ++. .|       +.++..|++++.+.         
T Consensus        13 ~~g-kVvEVGiG~~~~VA~~L~e~g~d-v~atDI~~~-------~a~-~g-------~~~v~DDitnP~~~---------   66 (129)
T COG1255          13 ARG-KVVEVGIGFFLDVAKRLAERGFD-VLATDINEK-------TAP-EG-------LRFVVDDITNPNIS---------   66 (129)
T ss_pred             cCC-cEEEEccchHHHHHHHHHHcCCc-EEEEecccc-------cCc-cc-------ceEEEccCCCccHH---------
Confidence            445 8999998865 345567778755 999999996       111 22       66778888864321         


Q ss_pred             cccccccCCCCCCceeEEEE-eCChHHHHHHHHHHhHhcCCCeEEEEeccCCCCH
Q 026513          148 LSSHKIRGISQTEKYDVVIA-NILLNPLLQLADHIVSYAKPGAVVGISGILSEQL  201 (237)
Q Consensus       148 ~~~~~~~~~~~~~~fD~I~~-n~~~~~~~~~l~~~~~~L~~gG~liis~~~~~~~  201 (237)
                             -   =...|+|++ -||.+.+..+++-..   +-|.-+|+.....+..
T Consensus        67 -------i---Y~~A~lIYSiRpppEl~~~ildva~---aVga~l~I~pL~Ge~v  108 (129)
T COG1255          67 -------I---YEGADLIYSIRPPPELQSAILDVAK---AVGAPLYIKPLTGEPV  108 (129)
T ss_pred             -------H---hhCccceeecCCCHHHHHHHHHHHH---hhCCCEEEEecCCCCC
Confidence                   1   146899988 566666666655444   4567788876665543

>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit

Probab=91.22  E-value=0.83  Score=42.39  Aligned_cols=42  Identities=21%  Similarity=0.248  Sum_probs=31.6

Q ss_pred             CCCeEEEEcCcc-hHHHHHHHHhCCCeEEEEeCCHHHHHHHHH
Q 026513           70 GGELFLDYGTGS-GILGIAAIKFGAAMSVGADIDPQAIKSAHQ  111 (237)
Q Consensus        70 ~~~~vLDlG~G~-G~~~~~la~~~~~~v~~vD~s~~~i~~a~~  111 (237)
                      ++.+|+-+|+|. |..+..+++.-...|+++|.++..++.++.
T Consensus       163 p~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~~  205 (511)
T TIGR00561       163 PPAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQS  205 (511)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence            457999999997 566666665423459999999998777664

In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.

>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]

Probab=91.17  E-value=1.9  Score=36.86  Aligned_cols=89  Identities=20%  Similarity=0.187  Sum_probs=60.1

Q ss_pred             CeEEEEcCcc--hHHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccccc
Q 026513           72 ELFLDYGTGS--GILGIAAIKFGAA-MSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDL  148 (237)
Q Consensus        72 ~~vLDlG~G~--G~~~~~la~~~~~-~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~  148 (237)
                      .+|+-+|.|.  |.++..+...|.. .+++.|.+...++.+.+.    ++..     +. ..+.                
T Consensus         4 ~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~l----gv~d-----~~-~~~~----------------   57 (279)
T COG0287           4 MKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALEL----GVID-----EL-TVAG----------------   57 (279)
T ss_pred             cEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhc----Cccc-----cc-ccch----------------
Confidence            4688888874  5667777666554 488999998877766532    3321     00 0110                


Q ss_pred             ccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEE
Q 026513          149 SSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVG  192 (237)
Q Consensus       149 ~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~li  192 (237)
                            ........|+||...|......+++++...|++|..+.
T Consensus        58 ------~~~~~~~aD~VivavPi~~~~~~l~~l~~~l~~g~iv~   95 (279)
T COG0287          58 ------LAEAAAEADLVIVAVPIEATEEVLKELAPHLKKGAIVT   95 (279)
T ss_pred             ------hhhhcccCCEEEEeccHHHHHHHHHHhcccCCCCCEEE
Confidence                  01114568999999999999999999998888887654

>cd05278 FDH_like Formaldehyde dehydrogenases

Probab=90.87  E-value=2.8  Score=36.16  Aligned_cols=101  Identities=21%  Similarity=0.357  Sum_probs=57.1

Q ss_pred             ccCCCeEEEEcCcc-hHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccc
Q 026513           68 IKGGELFLDYGTGS-GILGIAAIKF-GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVV  145 (237)
Q Consensus        68 ~~~~~~vLDlG~G~-G~~~~~la~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  145 (237)
                      .+++.+||..|+|. |..++.+++. |...+++++.++...+.+++.    +...   -+.....++.+           
T Consensus       165 ~~~~~~VlI~g~g~vg~~~iqlak~~g~~~v~~~~~~~~~~~~~~~~----g~~~---vi~~~~~~~~~-----------  226 (347)
T cd05278         165 IKPGSTVAVIGAGPVGLCAVAGARLLGAARIIAVDSNPERLDLAKEA----GATD---IINPKNGDIVE-----------  226 (347)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHh----CCcE---EEcCCcchHHH-----------
Confidence            45788899877653 5566666654 545788998888776665542    2211   01111111110           


Q ss_pred             cccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEec
Q 026513          146 EDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISG  195 (237)
Q Consensus       146 ~~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~  195 (237)
                            .+........+|+++......   ..+....+.|+++|+++..+
T Consensus       227 ------~i~~~~~~~~~d~vld~~g~~---~~~~~~~~~l~~~G~~v~~g  267 (347)
T cd05278         227 ------QILELTGGRGVDCVIEAVGFE---ETFEQAVKVVRPGGTIANVG  267 (347)
T ss_pred             ------HHHHHcCCCCCcEEEEccCCH---HHHHHHHHHhhcCCEEEEEc
Confidence                  011122235799998643321   35566778889999988654

Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall

>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent

Probab=90.62  E-value=2.3  Score=38.04  Aligned_cols=105  Identities=19%  Similarity=0.351  Sum_probs=61.4

Q ss_pred             ccCCCeEEEEcCcc-hHHHHHHHH-hCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccC-cccccccccccccc
Q 026513           68 IKGGELFLDYGTGS-GILGIAAIK-FGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPD-RTFTASMNERVDGV  144 (237)
Q Consensus        68 ~~~~~~vLDlG~G~-G~~~~~la~-~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~-d~~~~~~~~~~~~~  144 (237)
                      +.+|.+||-.|+|. |..++.+++ .|...++.+|.++..++.|++.    |..    .+..... +..+          
T Consensus       183 ~~~g~~VlV~G~G~iG~~aiqlAk~~Ga~~vi~~d~~~~r~~~a~~~----Ga~----~v~~~~~~~~~~----------  244 (393)
T TIGR02819       183 VGPGSTVYIAGAGPVGLAAAASAQLLGAAVVIVGDLNPARLAQARSF----GCE----TVDLSKDATLPE----------  244 (393)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHc----CCe----EEecCCcccHHH----------
Confidence            56788888888764 555566665 4777677889988777777653    321    1111111 1110          


Q ss_pred             ccccccccccCCCCCCceeEEEEeCChHH-----------HHHHHHHHhHhcCCCeEEEEeccC
Q 026513          145 VEDLSSHKIRGISQTEKYDVVIANILLNP-----------LLQLADHIVSYAKPGAVVGISGIL  197 (237)
Q Consensus       145 ~~~~~~~~~~~~~~~~~fD~I~~n~~~~~-----------~~~~l~~~~~~L~~gG~liis~~~  197 (237)
                             .+........+|+++-......           ....++...+++++||.+++.++.
T Consensus       245 -------~v~~~~~~~g~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~G~~  301 (393)
T TIGR02819       245 -------QIEQILGEPEVDCAVDCVGFEARGHGHDGKKEAPATVLNSLMEVTRVGGAIGIPGLY  301 (393)
T ss_pred             -------HHHHHcCCCCCcEEEECCCCccccccccccccchHHHHHHHHHHhhCCCEEEEeeec
Confidence                   0011122346899885332210           013567778899999999997664

Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.

>PLN03154 putative allyl alcohol dehydrogenase; Provisional

Probab=90.38  E-value=2.2  Score=37.42  Aligned_cols=102  Identities=15%  Similarity=0.157  Sum_probs=61.2

Q ss_pred             ccCCCeEEEEcC-c-chHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccC-cccccccccccccc
Q 026513           68 IKGGELFLDYGT-G-SGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPD-RTFTASMNERVDGV  144 (237)
Q Consensus        68 ~~~~~~vLDlG~-G-~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~-d~~~~~~~~~~~~~  144 (237)
                      +.+|.+||-.|+ | .|.+++.+++.-..++++++.++...+.+++.   .|...   -+..... +..+          
T Consensus       156 ~~~g~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~~~~~k~~~~~~~---lGa~~---vi~~~~~~~~~~----------  219 (348)
T PLN03154        156 PKKGDSVFVSAASGAVGQLVGQLAKLHGCYVVGSAGSSQKVDLLKNK---LGFDE---AFNYKEEPDLDA----------  219 (348)
T ss_pred             CCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHh---cCCCE---EEECCCcccHHH----------
Confidence            567899999998 3 47777777765345699999998877666532   23321   0111111 1110          


Q ss_pred             ccccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEeccC
Q 026513          145 VEDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGIL  197 (237)
Q Consensus       145 ~~~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~~~  197 (237)
                             .+.... .+.+|+++-...-    ..+..+.+.|+++|.+++.+..
T Consensus       220 -------~i~~~~-~~gvD~v~d~vG~----~~~~~~~~~l~~~G~iv~~G~~  260 (348)
T PLN03154        220 -------ALKRYF-PEGIDIYFDNVGG----DMLDAALLNMKIHGRIAVCGMV  260 (348)
T ss_pred             -------HHHHHC-CCCcEEEEECCCH----HHHHHHHHHhccCCEEEEECcc
Confidence                   011111 2468999865432    3456778889999999876543

>PRK07502 cyclohexadienyl dehydrogenase; Validated

Probab=90.34  E-value=3.4  Score=35.55  Aligned_cols=89  Identities=26%  Similarity=0.288  Sum_probs=56.4

Q ss_pred             CeEEEEcCcc-h-HHHHHHHHhCC-CeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccccc
Q 026513           72 ELFLDYGTGS-G-ILGIAAIKFGA-AMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDL  148 (237)
Q Consensus        72 ~~vLDlG~G~-G-~~~~~la~~~~-~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~  148 (237)
                      .+|.-+|+|. | .++..+...|. .+|+++|.++..++.+++    .++..     . ...+..               
T Consensus         7 ~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~----~g~~~-----~-~~~~~~---------------   61 (307)
T PRK07502          7 DRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARARE----LGLGD-----R-VTTSAA---------------   61 (307)
T ss_pred             cEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHh----CCCCc-----e-ecCCHH---------------
Confidence            4688899886 3 34444555554 479999999987766543    23211     0 011110               


Q ss_pred             ccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEE
Q 026513          149 SSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGI  193 (237)
Q Consensus       149 ~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~lii  193 (237)
                            ..  -...|+|+...|......++..+...++++..++.
T Consensus        62 ------~~--~~~aDvViiavp~~~~~~v~~~l~~~l~~~~iv~d   98 (307)
T PRK07502         62 ------EA--VKGADLVILCVPVGASGAVAAEIAPHLKPGAIVTD   98 (307)
T ss_pred             ------HH--hcCCCEEEECCCHHHHHHHHHHHHhhCCCCCEEEe
Confidence                  01  23689999988877777778888888899886654

>COG2961 ComJ Protein involved in catabolism of external DNA [General function prediction only]

Probab=90.30  E-value=4.8  Score=33.79  Aligned_cols=126  Identities=16%  Similarity=0.154  Sum_probs=79.3

Q ss_pred             HHHHHHHhhccCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccc
Q 026513           59 LCLLLLRRLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMN  138 (237)
Q Consensus        59 ~~~~~l~~~~~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~  138 (237)
                      ..+..+... .+|.+ |...||+-.++..+.+. ..++.++|..|.=....+.++...  .    ++.+.++|.+.... 
T Consensus        79 ~yl~~i~~l-N~~~~-l~~YpGSP~lA~~llR~-qDRl~l~ELHp~D~~~L~~~f~~d--~----~vrv~~~DG~~~l~-  148 (279)
T COG2961          79 PYLDAVRQL-NPGGG-LRYYPGSPLLARQLLRE-QDRLVLTELHPSDAPLLRNNFAGD--R----RVRVLRGDGFLALK-  148 (279)
T ss_pred             HHHHHHHHh-CCCCC-cccCCCCHHHHHHHcch-hceeeeeecCccHHHHHHHHhCCC--c----ceEEEecCcHHHHh-
Confidence            334444433 34443 99999999998888766 566999999999988888887632  2    47888999874321 


Q ss_pred             ccccccccccccccccCCCCCCceeEEEEeCChHHH---HHHH---HHHhHhcCCCeEEEEe-cc-CCCCHHHHHHHHhh
Q 026513          139 ERVDGVVEDLSSHKIRGISQTEKYDVVIANILLNPL---LQLA---DHIVSYAKPGAVVGIS-GI-LSEQLPHIINRYSE  210 (237)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~~~~---~~~l---~~~~~~L~~gG~liis-~~-~~~~~~~~~~~~~~  210 (237)
                                     ..+.+.++--+|+++||++.-   ..++   ++..... ++|...|- .+ ...+...+...++.
T Consensus       149 ---------------a~LPP~erRglVLIDPPfE~~~eY~rvv~~l~~~~kRf-~~g~yaiWYPik~r~~~~~f~~~L~~  212 (279)
T COG2961         149 ---------------AHLPPKERRGLVLIDPPFELKDEYQRVVEALAEAYKRF-ATGTYAIWYPIKDRRQIRRFLRALEA  212 (279)
T ss_pred             ---------------hhCCCCCcceEEEeCCCcccccHHHHHHHHHHHHHHhh-cCceEEEEEeecchHHHHHHHHHHhh
Confidence                           134456678999999998543   3333   3334443 44444442 22 34445555555553

>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=89.91  E-value=4.5  Score=32.74  Aligned_cols=57  Identities=21%  Similarity=0.244  Sum_probs=35.6

Q ss_pred             CCCeEEEEcCcchHHHH----HHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccc
Q 026513           70 GGELFLDYGTGSGILGI----AAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFT  134 (237)
Q Consensus        70 ~~~~vLDlG~G~G~~~~----~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~  134 (237)
                      .+++||-.|++.| ++.    .+++.|. +|++++-++...+.+.+.+...+      .+.++.+|+.+
T Consensus         4 ~~~~vlItGa~g~-iG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~------~~~~~~~Dl~~   64 (238)
T PRK05786          4 KGKKVAIIGVSEG-LGYAVAYFALKEGA-QVCINSRNENKLKRMKKTLSKYG------NIHYVVGDVSS   64 (238)
T ss_pred             CCcEEEEECCCch-HHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC------CeEEEECCCCC
Confidence            3678999998654 333    3334454 69999998877665544443322      26677788764

>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase

Probab=89.82  E-value=2.6  Score=36.62  Aligned_cols=103  Identities=19%  Similarity=0.201  Sum_probs=59.0

Q ss_pred             ccCCCeEEEEcCcc-hHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccc
Q 026513           68 IKGGELFLDYGTGS-GILGIAAIKF-GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVV  145 (237)
Q Consensus        68 ~~~~~~vLDlG~G~-G~~~~~la~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  145 (237)
                      +.+|.+||-.|+|. |..++.+++. |..+|++++.++...+.+++.    +...   -+.....++.+           
T Consensus       170 ~~~g~~vlI~g~g~vG~~a~q~a~~~G~~~v~~~~~~~~~~~~~~~~----ga~~---~i~~~~~~~~~-----------  231 (351)
T cd08233         170 FKPGDTALVLGAGPIGLLTILALKAAGASKIIVSEPSEARRELAEEL----GATI---VLDPTEVDVVA-----------  231 (351)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh----CCCE---EECCCccCHHH-----------
Confidence            46788888888653 4455555544 655899999999887777542    3321   01111111110           


Q ss_pred             cccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEeccC
Q 026513          146 EDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGIL  197 (237)
Q Consensus       146 ~~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~~~  197 (237)
                            .+........+|+++-.....   ..+..+.+.|+++|.++.-+..
T Consensus       232 ------~l~~~~~~~~~d~vid~~g~~---~~~~~~~~~l~~~G~~v~~g~~  274 (351)
T cd08233         232 ------EVRKLTGGGGVDVSFDCAGVQ---ATLDTAIDALRPRGTAVNVAIW  274 (351)
T ss_pred             ------HHHHHhCCCCCCEEEECCCCH---HHHHHHHHhccCCCEEEEEccC
Confidence                  011112234599999755321   2346677788999999875543

(2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.

>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1

Probab=89.73  E-value=1.4  Score=35.00  Aligned_cols=95  Identities=15%  Similarity=0.189  Sum_probs=54.1

Q ss_pred             EEEEcCcc-h-HHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHc-------C-CCCC-----cceEEeccCcccccccc
Q 026513           74 FLDYGTGS-G-ILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALN-------N-IGPK-----KMKLHLVPDRTFTASMN  138 (237)
Q Consensus        74 vLDlG~G~-G-~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~-------~-~~~~-----~~~v~~~~~d~~~~~~~  138 (237)
                      |.-+|+|+ | .++..++.. ..+|+.+|.+++.++.+++.+...       + ++..     .-++.+ ..|.      
T Consensus         2 V~ViGaG~mG~~iA~~~a~~-G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~-~~dl------   73 (180)
T PF02737_consen    2 VAVIGAGTMGRGIAALFARA-GYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISF-TTDL------   73 (180)
T ss_dssp             EEEES-SHHHHHHHHHHHHT-TSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEE-ESSG------
T ss_pred             EEEEcCCHHHHHHHHHHHhC-CCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhccc-ccCH------
Confidence            56678876 3 344444555 466999999999998888766531       1 1100     000111 1111      


Q ss_pred             ccccccccccccccccCCCCCCceeEEEEeCC--hHHHHHHHHHHhHhcCCCeEEEEe
Q 026513          139 ERVDGVVEDLSSHKIRGISQTEKYDVVIANIL--LNPLLQLADHIVSYAKPGAVVGIS  194 (237)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~--~~~~~~~l~~~~~~L~~gG~liis  194 (237)
                                        ......|+|+-..+  ++.-.+++.++.+.++|+..|..+
T Consensus        74 ------------------~~~~~adlViEai~E~l~~K~~~~~~l~~~~~~~~ilasn  113 (180)
T PF02737_consen   74 ------------------EEAVDADLVIEAIPEDLELKQELFAELDEICPPDTILASN  113 (180)
T ss_dssp             ------------------GGGCTESEEEE-S-SSHHHHHHHHHHHHCCS-TTSEEEE-
T ss_pred             ------------------HHHhhhheehhhccccHHHHHHHHHHHHHHhCCCceEEec
Confidence                              11237899997665  444567899999999898887664

1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....

>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function

Probab=89.73  E-value=0.77  Score=38.45  Aligned_cols=44  Identities=14%  Similarity=0.215  Sum_probs=33.4

Q ss_pred             CeEEEEcCcchHHHHHHHHh---------CCCeEEEEeCCHHHHHHHHHHHHH
Q 026513           72 ELFLDYGTGSGILGIAAIKF---------GAAMSVGADIDPQAIKSAHQNAAL  115 (237)
Q Consensus        72 ~~vLDlG~G~G~~~~~la~~---------~~~~v~~vD~s~~~i~~a~~~~~~  115 (237)
                      .+|+|+|+|+|.++.-+.+.         ...+++.+|+|+...+.-++++..
T Consensus        20 ~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~   72 (252)
T PF02636_consen   20 LRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSE   72 (252)
T ss_dssp             EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCC
T ss_pred             cEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhh
Confidence            69999999999998876642         135799999999998887777654

; PDB: 4F3N_A 1ZKD_B.

>PRK07417 arogenate dehydrogenase; Reviewed

Probab=89.72  E-value=2.4  Score=36.06  Aligned_cols=84  Identities=19%  Similarity=0.253  Sum_probs=53.9

Q ss_pred             eEEEEcCcc--hHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccccccc
Q 026513           73 LFLDYGTGS--GILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDLSS  150 (237)
Q Consensus        73 ~vLDlG~G~--G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~  150 (237)
                      +|.=+|+|.  |.++..+.+.| .+|+++|.++..++.+.+.    +..      .....+.                  
T Consensus         2 ~I~IIG~G~mG~sla~~L~~~g-~~V~~~d~~~~~~~~a~~~----g~~------~~~~~~~------------------   52 (279)
T PRK07417          2 KIGIVGLGLIGGSLGLDLRSLG-HTVYGVSRRESTCERAIER----GLV------DEASTDL------------------   52 (279)
T ss_pred             eEEEEeecHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHC----CCc------ccccCCH------------------
Confidence            466678775  45555665565 4699999999887766532    221      1001110                  


Q ss_pred             ccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEE
Q 026513          151 HKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVV  191 (237)
Q Consensus       151 ~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~l  191 (237)
                          .  .-...|+|+...|.....++++.+...++++..+
T Consensus        53 ----~--~~~~aDlVilavp~~~~~~~~~~l~~~l~~~~ii   87 (279)
T PRK07417         53 ----S--LLKDCDLVILALPIGLLLPPSEQLIPALPPEAIV   87 (279)
T ss_pred             ----h--HhcCCCEEEEcCCHHHHHHHHHHHHHhCCCCcEE
Confidence                0  0246899999888877778888888888877544

>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]

Probab=89.53  E-value=3.5  Score=36.00  Aligned_cols=102  Identities=20%  Similarity=0.227  Sum_probs=61.1

Q ss_pred             ccCCCeEEEEcCcc--hHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccc
Q 026513           68 IKGGELFLDYGTGS--GILGIAAIKF-GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGV  144 (237)
Q Consensus        68 ~~~~~~vLDlG~G~--G~~~~~la~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~  144 (237)
                      +++|.+||-.|...  |.+++.+++. |. .++++-.+++-.+.+++    .+...   -+.+...|+.+          
T Consensus       140 l~~g~~VLV~gaaGgVG~~aiQlAk~~G~-~~v~~~~s~~k~~~~~~----lGAd~---vi~y~~~~~~~----------  201 (326)
T COG0604         140 LKPGETVLVHGAAGGVGSAAIQLAKALGA-TVVAVVSSSEKLELLKE----LGADH---VINYREEDFVE----------  201 (326)
T ss_pred             CCCCCEEEEecCCchHHHHHHHHHHHcCC-cEEEEecCHHHHHHHHh----cCCCE---EEcCCcccHHH----------
Confidence            56799999999544  6788888875 55 56777777755554443    33321   12222333221          


Q ss_pred             ccccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEeccCC
Q 026513          145 VEDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILS  198 (237)
Q Consensus       145 ~~~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~~~~  198 (237)
                             ....+.....+|+|+...-...    +......|+++|.++..+...
T Consensus       202 -------~v~~~t~g~gvDvv~D~vG~~~----~~~~l~~l~~~G~lv~ig~~~  244 (326)
T COG0604         202 -------QVRELTGGKGVDVVLDTVGGDT----FAASLAALAPGGRLVSIGALS  244 (326)
T ss_pred             -------HHHHHcCCCCceEEEECCCHHH----HHHHHHHhccCCEEEEEecCC
Confidence                   1112333457999997664333    344667889999999876644

>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=89.36  E-value=2  Score=38.26  Aligned_cols=111  Identities=22%  Similarity=0.283  Sum_probs=72.2

Q ss_pred             ccCCCeEEEEcCcchHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHH-------HcCCCCCcceEEeccCccccccccc
Q 026513           68 IKGGELFLDYGTGSGILGIAAIKF-GAAMSVGADIDPQAIKSAHQNAA-------LNNIGPKKMKLHLVPDRTFTASMNE  139 (237)
Q Consensus        68 ~~~~~~vLDlG~G~G~~~~~la~~-~~~~v~~vD~s~~~i~~a~~~~~-------~~~~~~~~~~v~~~~~d~~~~~~~~  139 (237)
                      +.++....|+|+|.|.+...++.+ +...-+|+++.+...+.|..+..       ..|-.+  -.+..++++...+..- 
T Consensus       190 ~g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~--~~~~~i~gsf~~~~~v-  266 (419)
T KOG3924|consen  190 LGPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKP--NKIETIHGSFLDPKRV-  266 (419)
T ss_pred             cCCCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhCCCc--CceeecccccCCHHHH-
Confidence            578889999999999998887765 55667788887766666554432       222211  1467788887642211 


Q ss_pred             cccccccccccccccCCCCCCceeEEEEeCCh-HHH-HHHHHHHhHhcCCCeEEEEeccC
Q 026513          140 RVDGVVEDLSSHKIRGISQTEKYDVVIANILL-NPL-LQLADHIVSYAKPGAVVGISGIL  197 (237)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~-~~~-~~~l~~~~~~L~~gG~liis~~~  197 (237)
                            .+        +  ....++|++|-.. +.- .--+.++..-+++|.+++-+.-+
T Consensus       267 ------~e--------I--~~eatvi~vNN~~Fdp~L~lr~~eil~~ck~gtrIiS~~~L  310 (419)
T KOG3924|consen  267 ------TE--------I--QTEATVIFVNNVAFDPELKLRSKEILQKCKDGTRIISSKPL  310 (419)
T ss_pred             ------HH--------H--hhcceEEEEecccCCHHHHHhhHHHHhhCCCcceEeccccc
Confidence                  11        1  3578999987653 222 22245788888999999876443

>TIGR00936 ahcY adenosylhomocysteinase

Probab=89.33  E-value=3.4  Score=37.28  Aligned_cols=101  Identities=15%  Similarity=0.112  Sum_probs=59.2

Q ss_pred             ccCCCeEEEEcCcc-hHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccc
Q 026513           68 IKGGELFLDYGTGS-GILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVE  146 (237)
Q Consensus        68 ~~~~~~vLDlG~G~-G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  146 (237)
                      ...|++|+-+|+|. |......++.-..+|+++|.++.....|.    ..|.       .+.  +..             
T Consensus       192 ~l~Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~r~~~A~----~~G~-------~v~--~le-------------  245 (406)
T TIGR00936       192 LIAGKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPIRALEAA----MDGF-------RVM--TME-------------  245 (406)
T ss_pred             CCCcCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChhhHHHHH----hcCC-------EeC--CHH-------------
Confidence            35789999999998 44444444433456999999986433332    2232       111  110             


Q ss_pred             ccccccccCCCCCCceeEEEEeCChHHHHHHHH-HHhHhcCCCeEEEEeccCCC--CHHHHHHH
Q 026513          147 DLSSHKIRGISQTEKYDVVIANILLNPLLQLAD-HIVSYAKPGAVVGISGILSE--QLPHIINR  207 (237)
Q Consensus       147 ~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~-~~~~~L~~gG~liis~~~~~--~~~~~~~~  207 (237)
                              ..  -...|++++...   ...++. .....+++|++++..+....  +...+.+.
T Consensus       246 --------ea--l~~aDVVItaTG---~~~vI~~~~~~~mK~GailiN~G~~~~eId~~aL~~~  296 (406)
T TIGR00936       246 --------EA--AKIGDIFITATG---NKDVIRGEHFENMKDGAIVANIGHFDVEIDVKALEEL  296 (406)
T ss_pred             --------HH--HhcCCEEEECCC---CHHHHHHHHHhcCCCCcEEEEECCCCceeCHHHHHHH
Confidence                    00  135799887553   233443 37778999999998765432  34455443

This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).

>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases

Probab=89.19  E-value=3  Score=36.73  Aligned_cols=102  Identities=18%  Similarity=0.234  Sum_probs=59.0

Q ss_pred             ccCCCeEEEEcCcc-hHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccC--ccccccccccccc
Q 026513           68 IKGGELFLDYGTGS-GILGIAAIKF-GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPD--RTFTASMNERVDG  143 (237)
Q Consensus        68 ~~~~~~vLDlG~G~-G~~~~~la~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~--d~~~~~~~~~~~~  143 (237)
                      +++|.+||-.|+|. |.++..+++. |..+|+++|.++..++.+++    .+...   -+.....  ++.         +
T Consensus       184 ~~~g~~VlV~G~G~vG~~a~~~ak~~G~~~vi~~~~~~~~~~~~~~----lGa~~---~i~~~~~~~~~~---------~  247 (368)
T cd08300         184 VEPGSTVAVFGLGAVGLAVIQGAKAAGASRIIGIDINPDKFELAKK----FGATD---CVNPKDHDKPIQ---------Q  247 (368)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH----cCCCE---EEcccccchHHH---------H
Confidence            56789999998764 5555666654 66579999999988777653    23221   0111110  010         0


Q ss_pred             cccccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCC-eEEEEeccC
Q 026513          144 VVEDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPG-AVVGISGIL  197 (237)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~g-G~liis~~~  197 (237)
                              .+.... .+.+|+|+-...-   ...+....+.++++ |.+++.+..
T Consensus       248 --------~v~~~~-~~g~d~vid~~g~---~~~~~~a~~~l~~~~G~~v~~g~~  290 (368)
T cd08300         248 --------VLVEMT-DGGVDYTFECIGN---VKVMRAALEACHKGWGTSVIIGVA  290 (368)
T ss_pred             --------HHHHHh-CCCCcEEEECCCC---hHHHHHHHHhhccCCCeEEEEccC
Confidence                    001111 2368999864321   13456667788887 888876554

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=89.12  E-value=2  Score=38.52  Aligned_cols=54  Identities=15%  Similarity=0.044  Sum_probs=36.2

Q ss_pred             CeEEEEcCcc-hHHHH-HHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccc
Q 026513           72 ELFLDYGTGS-GILGI-AAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTF  133 (237)
Q Consensus        72 ~~vLDlG~G~-G~~~~-~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~  133 (237)
                      ++||-||||. |.... .+++.+..+|+..|-|....+.+......        +++..+.|+.
T Consensus         2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~--------~v~~~~vD~~   57 (389)
T COG1748           2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGG--------KVEALQVDAA   57 (389)
T ss_pred             CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhccc--------cceeEEeccc
Confidence            4699999964 44433 34566768899999998887766554321        2556666665

>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members

Probab=89.05  E-value=2.8  Score=34.90  Aligned_cols=95  Identities=22%  Similarity=0.153  Sum_probs=57.2

Q ss_pred             ccCCCeEEEEcCcc-hHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccc
Q 026513           68 IKGGELFLDYGTGS-GILGIAAIKF-GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVV  145 (237)
Q Consensus        68 ~~~~~~vLDlG~G~-G~~~~~la~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  145 (237)
                      +.++.++|-.|+|. |..++.+++. |..+|++++.+++..+.+++.    +...   .+.  ...-             
T Consensus        95 ~~~g~~vlI~g~g~vg~~~i~~a~~~g~~~vi~~~~~~~~~~~~~~~----g~~~---~~~--~~~~-------------  152 (277)
T cd08255          95 PRLGERVAVVGLGLVGLLAAQLAKAAGAREVVGVDPDAARRELAEAL----GPAD---PVA--ADTA-------------  152 (277)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEECCCHHHHHHHHHc----CCCc---ccc--ccch-------------
Confidence            46788899988765 5556666654 544499999998887766543    2111   010  1000             


Q ss_pred             cccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEecc
Q 026513          146 EDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGI  196 (237)
Q Consensus       146 ~~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~~  196 (237)
                               .......+|+++.....   ...+....+.|+++|.++..+.
T Consensus       153 ---------~~~~~~~~d~vl~~~~~---~~~~~~~~~~l~~~g~~~~~g~  191 (277)
T cd08255         153 ---------DEIGGRGADVVIEASGS---PSALETALRLLRDRGRVVLVGW  191 (277)
T ss_pred             ---------hhhcCCCCCEEEEccCC---hHHHHHHHHHhcCCcEEEEEec
Confidence                     00113468999865322   1245666778899999987544

This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD

>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=89.02  E-value=7.9  Score=32.97  Aligned_cols=91  Identities=15%  Similarity=0.154  Sum_probs=54.1

Q ss_pred             ccCCCeEEEEcCcc-hHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccc
Q 026513           68 IKGGELFLDYGTGS-GILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVE  146 (237)
Q Consensus        68 ~~~~~~vLDlG~G~-G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  146 (237)
                      +.++.+||-.|+|. |..++.+++.-..++++++.+++..+.+++    .+...    +.... +               
T Consensus       153 ~~~g~~vlV~g~g~vg~~~~q~a~~~G~~vi~~~~~~~~~~~~~~----~g~~~----~~~~~-~---------------  208 (319)
T cd08242         153 ITPGDKVAVLGDGKLGLLIAQVLALTGPDVVLVGRHSEKLALARR----LGVET----VLPDE-A---------------  208 (319)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHH----cCCcE----EeCcc-c---------------
Confidence            46788899887643 344444555433448999999988777765    24321    11100 0               


Q ss_pred             ccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEe
Q 026513          147 DLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGIS  194 (237)
Q Consensus       147 ~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis  194 (237)
                               ......+|+++....-   ...+..+...|+++|.++..
T Consensus       209 ---------~~~~~~~d~vid~~g~---~~~~~~~~~~l~~~g~~v~~  244 (319)
T cd08242         209 ---------ESEGGGFDVVVEATGS---PSGLELALRLVRPRGTVVLK  244 (319)
T ss_pred             ---------cccCCCCCEEEECCCC---hHHHHHHHHHhhcCCEEEEE
Confidence                     0124579999875422   12345566778999998864

This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta

>PF04378 RsmJ: Ribosomal RNA small subunit methyltransferase D, RsmJ; InterPro: IPR007473 This is a bacterial protein of unknown function, possibly secreted

Probab=88.57  E-value=3.2  Score=34.80  Aligned_cols=128  Identities=15%  Similarity=0.185  Sum_probs=64.3

Q ss_pred             hHHHHHHHHHhhccCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccc
Q 026513           56 TTKLCLLLLRRLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTA  135 (237)
Q Consensus        56 ~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~  135 (237)
                      .....+..++.....+.  +...+|+-.++..+.+. ..+.+.+|+.+.-.+..++++....      ++.+...|.++.
T Consensus        45 ~l~~yl~~v~~~n~~~~--l~~YPGSP~ia~~llR~-qDrl~l~ELHp~d~~~L~~~~~~~~------~v~v~~~DG~~~  115 (245)
T PF04378_consen   45 ALQPYLDAVRALNPDGE--LRFYPGSPAIAARLLRE-QDRLVLFELHPQDFEALKKNFRRDR------RVRVHHRDGYEG  115 (245)
T ss_dssp             GGHHHHHHHHHHSSSSS----EEE-HHHHHHHHS-T-TSEEEEE--SHHHHHHHTTS--TTS-------EEEE-S-HHHH
T ss_pred             HHHHHHHHHHHhccCCC--cCcCCCCHHHHHHhCCc-cceEEEEecCchHHHHHHHHhccCC------ccEEEeCchhhh
Confidence            33445555544333332  77888888888777765 5779999999999998888876432      488889998853


Q ss_pred             cccccccccccccccccccCCCCCCceeEEEEeCChHH---HHHH---HHHHhHhcCCCeEEEEe-ccC-CCCHHHHHHH
Q 026513          136 SMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLNP---LLQL---ADHIVSYAKPGAVVGIS-GIL-SEQLPHIINR  207 (237)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~~~---~~~~---l~~~~~~L~~gG~liis-~~~-~~~~~~~~~~  207 (237)
                      ..                ..+.+..+=-+|+++||++.   +.++   +..+.+.- +.|.+++- .+. ......+.+.
T Consensus       116 l~----------------allPP~~rRglVLIDPpYE~~~dy~~v~~~l~~a~kR~-~~G~~~iWYPi~~~~~~~~~~~~  178 (245)
T PF04378_consen  116 LK----------------ALLPPPERRGLVLIDPPYEQKDDYQRVVDALAKALKRW-PTGVYAIWYPIKDRERVDRFLRA  178 (245)
T ss_dssp             HH----------------HH-S-TTS-EEEEE-----STTHHHHHHHHHHHHHHH--TTSEEEEEEEESSHHHHHHHHHH
T ss_pred             hh----------------hhCCCCCCCeEEEECCCCCCchHHHHHHHHHHHHHHhc-CCcEEEEEeecccHHHHHHHHHH
Confidence            21                13344567889999999643   3333   33333333 55655553 333 2233444444


Q ss_pred             Hh
Q 026513          208 YS  209 (237)
Q Consensus       208 ~~  209 (237)
                      +.
T Consensus       179 l~  180 (245)
T PF04378_consen  179 LK  180 (245)
T ss_dssp             HH
T ss_pred             HH
Confidence            44

; PDB: 2OO3_A.

>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=88.52  E-value=11  Score=31.88  Aligned_cols=109  Identities=14%  Similarity=0.100  Sum_probs=62.3

Q ss_pred             eEEEEcCcc--hHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHH-------HHcCC-CCCcc-----eEEeccCccccccc
Q 026513           73 LFLDYGTGS--GILGIAAIKFGAAMSVGADIDPQAIKSAHQNA-------ALNNI-GPKKM-----KLHLVPDRTFTASM  137 (237)
Q Consensus        73 ~vLDlG~G~--G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~-------~~~~~-~~~~~-----~v~~~~~d~~~~~~  137 (237)
                      +|.-+|+|.  +.++..++..|. +|+++|.+++.++.+++.+       ...+. .....     ++.+ ..|.     
T Consensus         5 kI~VIG~G~mG~~ia~~la~~g~-~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~-~~~~-----   77 (282)
T PRK05808          5 KIGVIGAGTMGNGIAQVCAVAGY-DVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITG-TTDL-----   77 (282)
T ss_pred             EEEEEccCHHHHHHHHHHHHCCC-ceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE-eCCH-----
Confidence            577788885  355555666654 6999999999987665432       22221 10000     0110 0110     


Q ss_pred             cccccccccccccccccCCCCCCceeEEEEeCCh--HHHHHHHHHHhHhcCCCeEEEEeccCCCCHHHHHHHH
Q 026513          138 NERVDGVVEDLSSHKIRGISQTEKYDVVIANILL--NPLLQLADHIVSYAKPGAVVGISGILSEQLPHIINRY  208 (237)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~--~~~~~~l~~~~~~L~~gG~liis~~~~~~~~~~~~~~  208 (237)
                                         ..-...|+|+...+-  ..-..++..+.+.++++..+ .+..-.-...++...+
T Consensus        78 -------------------~~~~~aDlVi~av~e~~~~k~~~~~~l~~~~~~~~il-~s~ts~~~~~~la~~~  130 (282)
T PRK05808         78 -------------------DDLKDADLVIEAATENMDLKKKIFAQLDEIAKPEAIL-ATNTSSLSITELAAAT  130 (282)
T ss_pred             -------------------HHhccCCeeeecccccHHHHHHHHHHHHhhCCCCcEE-EECCCCCCHHHHHHhh
Confidence                               012468999987653  33357888899999988776 4433334444555544

>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=88.34  E-value=1.7  Score=36.75  Aligned_cols=71  Identities=14%  Similarity=0.178  Sum_probs=52.6

Q ss_pred             ccCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccc
Q 026513           68 IKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVED  147 (237)
Q Consensus        68 ~~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  147 (237)
                      +.+|....|+|+-+|+.+..+.+. ...|+++|--+.+-     ++-..|      .++....|.+              
T Consensus       209 L~~~M~avDLGAcPGGWTyqLVkr-~m~V~aVDng~ma~-----sL~dtg------~v~h~r~DGf--------------  262 (358)
T COG2933         209 LAPGMWAVDLGACPGGWTYQLVKR-NMRVYAVDNGPMAQ-----SLMDTG------QVTHLREDGF--------------  262 (358)
T ss_pred             hcCCceeeecccCCCccchhhhhc-ceEEEEeccchhhh-----hhhccc------ceeeeeccCc--------------
Confidence            568999999999999999999988 45599999887432     222222      3666677776              


Q ss_pred             cccccccCCCC-CCceeEEEEeCCh
Q 026513          148 LSSHKIRGISQ-TEKYDVVIANILL  171 (237)
Q Consensus       148 ~~~~~~~~~~~-~~~fD~I~~n~~~  171 (237)
                             .+.+ ..+.|..+|+++-
T Consensus       263 -------k~~P~r~~idWmVCDmVE  280 (358)
T COG2933         263 -------KFRPTRSNIDWMVCDMVE  280 (358)
T ss_pred             -------ccccCCCCCceEEeehhc
Confidence                   3333 5689999999963

>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]

Probab=88.28  E-value=1.3  Score=38.49  Aligned_cols=46  Identities=26%  Similarity=0.456  Sum_probs=36.3

Q ss_pred             hccCCCeEEEEcCcc-hHHHHHHHH-hCCCeEEEEeCCHHHHHHHHHH
Q 026513           67 LIKGGELFLDYGTGS-GILGIAAIK-FGAAMSVGADIDPQAIKSAHQN  112 (237)
Q Consensus        67 ~~~~~~~vLDlG~G~-G~~~~~la~-~~~~~v~~vD~s~~~i~~a~~~  112 (237)
                      .+++|.++.-.|.|. |.-.+.-++ .|+.+++|+|++++-.+.|++-
T Consensus       189 kv~~GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~ak~f  236 (375)
T KOG0022|consen  189 KVEPGSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKFEKAKEF  236 (375)
T ss_pred             ccCCCCEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHHHHHHhc
Confidence            367899999999987 444444454 5899999999999999888764

>PRK06522 2-dehydropantoate 2-reductase; Reviewed

Probab=88.10  E-value=9.9  Score=32.26  Aligned_cols=96  Identities=15%  Similarity=0.122  Sum_probs=55.3

Q ss_pred             eEEEEcCcc-h-HHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccccccc
Q 026513           73 LFLDYGTGS-G-ILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDLSS  150 (237)
Q Consensus        73 ~vLDlG~G~-G-~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~  150 (237)
                      +|+-+|+|. | .++..+++.| .+|+.++-+++.++..++    .++.     +.  .++.....      .       
T Consensus         2 ~I~IiG~G~~G~~~a~~L~~~g-~~V~~~~r~~~~~~~~~~----~g~~-----~~--~~~~~~~~------~-------   56 (304)
T PRK06522          2 KIAILGAGAIGGLFGAALAQAG-HDVTLVARRGAHLDALNE----NGLR-----LE--DGEITVPV------L-------   56 (304)
T ss_pred             EEEEECCCHHHHHHHHHHHhCC-CeEEEEECChHHHHHHHH----cCCc-----cc--CCceeecc------c-------
Confidence            578899986 3 3444555555 469999987766654443    2321     10  11100000      0       


Q ss_pred             ccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEe
Q 026513          151 HKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGIS  194 (237)
Q Consensus       151 ~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis  194 (237)
                       ..........+|+|+...+......+++.+...+.++..++..
T Consensus        57 -~~~~~~~~~~~d~vila~k~~~~~~~~~~l~~~l~~~~~iv~~   99 (304)
T PRK06522         57 -AADDPAELGPQDLVILAVKAYQLPAALPSLAPLLGPDTPVLFL   99 (304)
T ss_pred             -CCCChhHcCCCCEEEEecccccHHHHHHHHhhhcCCCCEEEEe
Confidence             0001111257999998777666778888888888887766654

>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]

Probab=88.00  E-value=1.5  Score=38.51  Aligned_cols=46  Identities=26%  Similarity=0.493  Sum_probs=37.4

Q ss_pred             hccCCCeEEEEcCcc-hHHHHHHHH-hCCCeEEEEeCCHHHHHHHHHH
Q 026513           67 LIKGGELFLDYGTGS-GILGIAAIK-FGAAMSVGADIDPQAIKSAHQN  112 (237)
Q Consensus        67 ~~~~~~~vLDlG~G~-G~~~~~la~-~~~~~v~~vD~s~~~i~~a~~~  112 (237)
                      ..++|.+|.-+|||. |.-++.-+. .|+.+++++|+++.-++.|++-
T Consensus       182 ~v~~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~~f  229 (366)
T COG1062         182 KVEPGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKKF  229 (366)
T ss_pred             cCCCCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHHhc
Confidence            357899999999986 666665554 5899999999999999988764

>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional

Probab=87.86  E-value=3.4  Score=39.27  Aligned_cols=95  Identities=9%  Similarity=-0.028  Sum_probs=56.6

Q ss_pred             CeEEEEcCcc-hHHHH-HHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccccc
Q 026513           72 ELFLDYGTGS-GILGI-AAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDLS  149 (237)
Q Consensus        72 ~~vLDlG~G~-G~~~~-~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~  149 (237)
                      .+|+-+|+|. |.... .+.+. ...++.+|.|++.++.+++    .+       ..++.+|..+..+-           
T Consensus       401 ~~vII~G~Gr~G~~va~~L~~~-g~~vvvID~d~~~v~~~~~----~g-------~~v~~GDat~~~~L-----------  457 (601)
T PRK03659        401 PQVIIVGFGRFGQVIGRLLMAN-KMRITVLERDISAVNLMRK----YG-------YKVYYGDATQLELL-----------  457 (601)
T ss_pred             CCEEEecCchHHHHHHHHHHhC-CCCEEEEECCHHHHHHHHh----CC-------CeEEEeeCCCHHHH-----------
Confidence            3577777765 43322 23334 3469999999999887764    23       44678888743211           


Q ss_pred             cccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEe
Q 026513          150 SHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGIS  194 (237)
Q Consensus       150 ~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis  194 (237)
                          +. ..-.+.|.+++...-+.....+....+.+.|...++..
T Consensus       458 ----~~-agi~~A~~vv~~~~d~~~n~~i~~~~r~~~p~~~IiaR  497 (601)
T PRK03659        458 ----RA-AGAEKAEAIVITCNEPEDTMKIVELCQQHFPHLHILAR  497 (601)
T ss_pred             ----Hh-cCCccCCEEEEEeCCHHHHHHHHHHHHHHCCCCeEEEE
Confidence                11 11357888887665444333344445556788888764

>KOG0725 consensus Reductases with broad range of substrate specificities [General function prediction only]

Probab=87.76  E-value=7.1  Score=33.13  Aligned_cols=88  Identities=20%  Similarity=0.176  Sum_probs=56.4

Q ss_pred             CCCeEEEEcCcchH---HHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccc-ccccccccc
Q 026513           70 GGELFLDYGTGSGI---LGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTAS-MNERVDGVV  145 (237)
Q Consensus        70 ~~~~vLDlG~G~G~---~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~-~~~~~~~~~  145 (237)
                      .|+.+|--|.++|.   .+..+++.| .+|+.++.+++.++...+.+...+...  -++..+..|..+.. +..++...+
T Consensus         7 ~gkvalVTG~s~GIG~aia~~la~~G-a~v~i~~r~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~~~~l~~~~~   83 (270)
T KOG0725|consen    7 AGKVALVTGGSSGIGKAIALLLAKAG-AKVVITGRSEERLEETAQELGGLGYTG--GKVLAIVCDVSKEVDVEKLVEFAV   83 (270)
T ss_pred             CCcEEEEECCCChHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhcCCCC--CeeEEEECcCCCHHHHHHHHHHHH
Confidence            47889999998884   344566675 559999999999888877766555431  14667778875321 111122222


Q ss_pred             cccccccccCCCCCCceeEEEEeCC
Q 026513          146 EDLSSHKIRGISQTEKYDVVIANIL  170 (237)
Q Consensus       146 ~~~~~~~~~~~~~~~~fD~I~~n~~  170 (237)
                      +.+          .++.|+++.|..
T Consensus        84 ~~~----------~GkidiLvnnag   98 (270)
T KOG0725|consen   84 EKF----------FGKIDILVNNAG   98 (270)
T ss_pred             HHh----------CCCCCEEEEcCC
Confidence            221          478999998764

>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E

Probab=87.68  E-value=6.5  Score=31.73  Aligned_cols=32  Identities=25%  Similarity=0.223  Sum_probs=25.9

Q ss_pred             CCeEEEEcCcc-hH-HHHHHHHhCCCeEEEEeCC
Q 026513           71 GELFLDYGTGS-GI-LGIAAIKFGAAMSVGADID  102 (237)
Q Consensus        71 ~~~vLDlG~G~-G~-~~~~la~~~~~~v~~vD~s  102 (237)
                      +.+|+-+|||. |. .+..|+..|..+++.+|.+
T Consensus        21 ~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d   54 (202)
T TIGR02356        21 NSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDD   54 (202)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Confidence            56899999995 54 4556778899999999987

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.

>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]

Probab=87.68  E-value=4.3  Score=35.17  Aligned_cols=111  Identities=14%  Similarity=0.073  Sum_probs=65.0

Q ss_pred             eEEEEcCcc--hHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccccccc
Q 026513           73 LFLDYGTGS--GILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDLSS  150 (237)
Q Consensus        73 ~vLDlG~G~--G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~  150 (237)
                      +|+-+|+|.  |+++..|++.| ..|+.+--++. ++..+++    |+.     +.-..+.......             
T Consensus         2 kI~IlGaGAvG~l~g~~L~~~g-~~V~~~~R~~~-~~~l~~~----GL~-----i~~~~~~~~~~~~-------------   57 (307)
T COG1893           2 KILILGAGAIGSLLGARLAKAG-HDVTLLVRSRR-LEALKKK----GLR-----IEDEGGNFTTPVV-------------   57 (307)
T ss_pred             eEEEECCcHHHHHHHHHHHhCC-CeEEEEecHHH-HHHHHhC----CeE-----EecCCCccccccc-------------
Confidence            688899996  56777888887 55555555553 4444433    432     2111110000000             


Q ss_pred             ccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEeccCCCCHHHHHHHH
Q 026513          151 HKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILSEQLPHIINRY  208 (237)
Q Consensus       151 ~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~~~~~~~~~~~~~~  208 (237)
                       .........++|+|+...--....+.++.+...+++...+++-..--...+.+...+
T Consensus        58 -~~~~~~~~~~~Dlviv~vKa~q~~~al~~l~~~~~~~t~vl~lqNG~g~~e~l~~~~  114 (307)
T COG1893          58 -AATDAEALGPADLVIVTVKAYQLEEALPSLAPLLGPNTVVLFLQNGLGHEEELRKIL  114 (307)
T ss_pred             -cccChhhcCCCCEEEEEeccccHHHHHHHhhhcCCCCcEEEEEeCCCcHHHHHHHhC
Confidence             000111235899999988777788899999999999998887644333334344333

>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional

Probab=87.49  E-value=3.3  Score=37.60  Aligned_cols=90  Identities=17%  Similarity=0.213  Sum_probs=54.6

Q ss_pred             cCCCeEEEEcCcc-hHHHHHHH-HhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccc
Q 026513           69 KGGELFLDYGTGS-GILGIAAI-KFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVE  146 (237)
Q Consensus        69 ~~~~~vLDlG~G~-G~~~~~la-~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  146 (237)
                      ..|++|+-+|+|. |......+ ..|. +|+.+|.++.....+..    .+.       .+.  +..             
T Consensus       210 l~Gk~VlViG~G~IG~~vA~~lr~~Ga-~ViV~d~dp~ra~~A~~----~G~-------~v~--~l~-------------  262 (425)
T PRK05476        210 IAGKVVVVAGYGDVGKGCAQRLRGLGA-RVIVTEVDPICALQAAM----DGF-------RVM--TME-------------  262 (425)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEcCCchhhHHHHh----cCC-------Eec--CHH-------------
Confidence            4789999999997 43333333 3455 79999999865433321    131       111  111             


Q ss_pred             ccccccccCCCCCCceeEEEEeCChHHHHHHHH-HHhHhcCCCeEEEEeccCC
Q 026513          147 DLSSHKIRGISQTEKYDVVIANILLNPLLQLAD-HIVSYAKPGAVVGISGILS  198 (237)
Q Consensus       147 ~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~-~~~~~L~~gG~liis~~~~  198 (237)
                              ..  -..+|+|+....-   ..++. .....+|+|++++..+...
T Consensus       263 --------ea--l~~aDVVI~aTG~---~~vI~~~~~~~mK~GailiNvG~~d  302 (425)
T PRK05476        263 --------EA--AELGDIFVTATGN---KDVITAEHMEAMKDGAILANIGHFD  302 (425)
T ss_pred             --------HH--HhCCCEEEECCCC---HHHHHHHHHhcCCCCCEEEEcCCCC
Confidence                    11  1368999876422   23443 5778899999999876654

>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=87.49  E-value=5.6  Score=31.72  Aligned_cols=45  Identities=20%  Similarity=0.290  Sum_probs=28.4

Q ss_pred             ceeEEEEeCC----------hHHHHHHHHHHhHhcCCCeEEEEe-ccCCCCHHHHH
Q 026513          161 KYDVVIANIL----------LNPLLQLADHIVSYAKPGAVVGIS-GILSEQLPHII  205 (237)
Q Consensus       161 ~fD~I~~n~~----------~~~~~~~l~~~~~~L~~gG~liis-~~~~~~~~~~~  205 (237)
                      ..|+++...+          +..+...++.+...++++..+++. .+.--..+++.
T Consensus        76 ~adv~~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~~STvppGtt~~~~  131 (185)
T PF03721_consen   76 DADVVFICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVVIESTVPPGTTEELL  131 (185)
T ss_dssp             H-SEEEE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEEESSSSSTTHHHHHH
T ss_pred             ccceEEEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEEEccEEEEeeehHhh
Confidence            5788876433          456778889999999998888874 44433344333

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....

>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional

Probab=87.40  E-value=5.5  Score=38.03  Aligned_cols=95  Identities=15%  Similarity=0.076  Sum_probs=56.3

Q ss_pred             CeEEEEcCcc-hHHHHH-HHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccccc
Q 026513           72 ELFLDYGTGS-GILGIA-AIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDLS  149 (237)
Q Consensus        72 ~~vLDlG~G~-G~~~~~-la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~  149 (237)
                      .+|+-+|+|. |..... +.+.+ ..++.+|.|++.++.+++    .+       ..++.+|..+..+-           
T Consensus       401 ~~vII~G~Gr~G~~va~~L~~~g-~~vvvID~d~~~v~~~~~----~g-------~~v~~GDat~~~~L-----------  457 (621)
T PRK03562        401 PRVIIAGFGRFGQIVGRLLLSSG-VKMTVLDHDPDHIETLRK----FG-------MKVFYGDATRMDLL-----------  457 (621)
T ss_pred             CcEEEEecChHHHHHHHHHHhCC-CCEEEEECCHHHHHHHHh----cC-------CeEEEEeCCCHHHH-----------
Confidence            5788888886 544333 33443 459999999999888764    23       44678887743211           


Q ss_pred             cccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEe
Q 026513          150 SHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGIS  194 (237)
Q Consensus       150 ~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis  194 (237)
                          +. ..-.+.|++++...-+.....+....+.+.|+-.++..
T Consensus       458 ----~~-agi~~A~~vvv~~~d~~~n~~i~~~ar~~~p~~~iiaR  497 (621)
T PRK03562        458 ----ES-AGAAKAEVLINAIDDPQTSLQLVELVKEHFPHLQIIAR  497 (621)
T ss_pred             ----Hh-cCCCcCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEE
Confidence                11 11347888887554433333333344445677666653

>PF02086 MethyltransfD12: D12 class N6 adenine-specific DNA methyltransferase; InterPro: IPR012327 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes

Probab=87.40  E-value=1.1  Score=37.30  Aligned_cols=49  Identities=16%  Similarity=0.171  Sum_probs=33.1

Q ss_pred             HHHHhhcc--CCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHH
Q 026513           62 LLLRRLIK--GGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQ  111 (237)
Q Consensus        62 ~~l~~~~~--~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~  111 (237)
                      ..+...++  +..+++|+.||+|.++..+.. ...+++.-|+++..+...+.
T Consensus        10 ~~I~~~ip~~~~~~~vepF~G~g~V~~~~~~-~~~~vi~ND~~~~l~~~~~~   60 (260)
T PF02086_consen   10 KWIIELIPKNKHKTYVEPFAGGGSVFLNLKQ-PGKRVIINDINPDLINFWKA   60 (260)
T ss_dssp             HHHHHHS-S-S-SEEEETT-TTSHHHHCC----SSEEEEEES-HHHHHHHHH
T ss_pred             HHHHHHcCCCCCCEEEEEecchhHHHHHhcc-cccceeeeechHHHHHHHHH
Confidence            33444444  678999999999999988766 46779999999988777663

There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes []. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence. It has been shown [, , , ] that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A []. The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements []. According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine; PDB: 1Q0T_B 1YFJ_B 1Q0S_A 1YFL_B 1YF3_B 2DPM_A 2ORE_F 2G1P_B.

>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity

Probab=87.39  E-value=7.1  Score=33.29  Aligned_cols=99  Identities=13%  Similarity=0.123  Sum_probs=58.9

Q ss_pred             ccCCCeEEEEcC--cchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccc
Q 026513           68 IKGGELFLDYGT--GSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVV  145 (237)
Q Consensus        68 ~~~~~~vLDlG~--G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  145 (237)
                      +.+|.+||-.|.  |.|..++.+++....++++++.+++..+.+++    .|...   -+.....++.+           
T Consensus       141 ~~~g~~vlI~ga~g~vG~~aiqlA~~~G~~vi~~~~s~~~~~~l~~----~Ga~~---vi~~~~~~~~~-----------  202 (329)
T cd08294         141 PKAGETVVVNGAAGAVGSLVGQIAKIKGCKVIGCAGSDDKVAWLKE----LGFDA---VFNYKTVSLEE-----------  202 (329)
T ss_pred             CCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH----cCCCE---EEeCCCccHHH-----------
Confidence            567889998884  34677777776534469999999887777654    24321   01111111110           


Q ss_pred             cccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEec
Q 026513          146 EDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISG  195 (237)
Q Consensus       146 ~~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~  195 (237)
                            .+.... ...+|+|+....-    ..+....+.|+++|+++..+
T Consensus       203 ------~v~~~~-~~gvd~vld~~g~----~~~~~~~~~l~~~G~iv~~g  241 (329)
T cd08294         203 ------ALKEAA-PDGIDCYFDNVGG----EFSSTVLSHMNDFGRVAVCG  241 (329)
T ss_pred             ------HHHHHC-CCCcEEEEECCCH----HHHHHHHHhhccCCEEEEEc
Confidence                  001111 2469999854322    34567788899999998643

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac

>PRK08339 short chain dehydrogenase; Provisional

Probab=87.16  E-value=7.5  Score=32.37  Aligned_cols=84  Identities=13%  Similarity=0.189  Sum_probs=49.4

Q ss_pred             CCCeEEEEcCcchH---HHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccc
Q 026513           70 GGELFLDYGTGSGI---LGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVE  146 (237)
Q Consensus        70 ~~~~vLDlG~G~G~---~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  146 (237)
                      .++++|-.|+++|.   ++..+++.|. +|+.++.++..++.+.+.+....-.    ++.++..|+.+..   .+..+++
T Consensus         7 ~~k~~lItGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~----~~~~~~~Dv~~~~---~i~~~~~   78 (263)
T PRK08339          7 SGKLAFTTASSKGIGFGVARVLARAGA-DVILLSRNEENLKKAREKIKSESNV----DVSYIVADLTKRE---DLERTVK   78 (263)
T ss_pred             CCCEEEEeCCCCcHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhhcCC----ceEEEEecCCCHH---HHHHHHH
Confidence            46788988887663   3444555665 5899999988776666555432111    3667788876532   1222222


Q ss_pred             ccccccccCCCCCCceeEEEEeC
Q 026513          147 DLSSHKIRGISQTEKYDVVIANI  169 (237)
Q Consensus       147 ~~~~~~~~~~~~~~~fD~I~~n~  169 (237)
                      ..        ..-++.|+++.|.
T Consensus        79 ~~--------~~~g~iD~lv~na   93 (263)
T PRK08339         79 EL--------KNIGEPDIFFFST   93 (263)
T ss_pred             HH--------HhhCCCcEEEECC
Confidence            21        0124688888765

>PRK06701 short chain dehydrogenase; Provisional

Probab=87.01  E-value=6.4  Score=33.42  Aligned_cols=59  Identities=24%  Similarity=0.265  Sum_probs=33.2

Q ss_pred             CCCeEEEEcCcchH---HHHHHHHhCCCeEEEEeCCHH-HHHHHHHHHHHcCCCCCcceEEeccCcccc
Q 026513           70 GGELFLDYGTGSGI---LGIAAIKFGAAMSVGADIDPQ-AIKSAHQNAALNNIGPKKMKLHLVPDRTFT  134 (237)
Q Consensus        70 ~~~~vLDlG~G~G~---~~~~la~~~~~~v~~vD~s~~-~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~  134 (237)
                      .++++|-.|++.|.   ++..+++.| .+|+.++.++. ..+.....+...+.     ++.++.+|+.+
T Consensus        45 ~~k~iLItGasggIG~~la~~l~~~G-~~V~l~~r~~~~~~~~~~~~~~~~~~-----~~~~~~~Dl~~  107 (290)
T PRK06701         45 KGKVALITGGDSGIGRAVAVLFAKEG-ADIAIVYLDEHEDANETKQRVEKEGV-----KCLLIPGDVSD  107 (290)
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEeCCcchHHHHHHHHHHhcCC-----eEEEEEccCCC
Confidence            46789999876652   333444555 45778877642 23333333333231     36677888764

>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase

Probab=86.95  E-value=3.8  Score=35.98  Aligned_cols=101  Identities=17%  Similarity=0.263  Sum_probs=58.6

Q ss_pred             ccCCCeEEEEcCcc-hHHHHHHHH-hCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccc
Q 026513           68 IKGGELFLDYGTGS-GILGIAAIK-FGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVV  145 (237)
Q Consensus        68 ~~~~~~vLDlG~G~-G~~~~~la~-~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  145 (237)
                      +.++.+||-.|+|. |..++.+++ .|...++++|.++...+.+++.    +...   -+.....+..+           
T Consensus       184 ~~~g~~vlI~g~g~vG~~~~~la~~~G~~~v~~~~~~~~k~~~~~~~----g~~~---~i~~~~~~~~~-----------  245 (365)
T cd08278         184 PRPGSSIAVFGAGAVGLAAVMAAKIAGCTTIIAVDIVDSRLELAKEL----GATH---VINPKEEDLVA-----------  245 (365)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHc----CCcE---EecCCCcCHHH-----------
Confidence            45688899888754 555566665 4666799999999877666542    3211   01100111110           


Q ss_pred             cccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEecc
Q 026513          146 EDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGI  196 (237)
Q Consensus       146 ~~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~~  196 (237)
                            .+.... ...+|+|+.....   ...+..+.+.++++|.++..+.
T Consensus       246 ------~v~~~~-~~~~d~vld~~g~---~~~~~~~~~~l~~~G~~v~~g~  286 (365)
T cd08278         246 ------AIREIT-GGGVDYALDTTGV---PAVIEQAVDALAPRGTLALVGA  286 (365)
T ss_pred             ------HHHHHh-CCCCcEEEECCCC---cHHHHHHHHHhccCCEEEEeCc
Confidence                  001112 3469999865422   1245667788899999887543

Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu

>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]

Probab=86.66  E-value=4  Score=33.00  Aligned_cols=104  Identities=12%  Similarity=0.235  Sum_probs=61.7

Q ss_pred             ccCCCeEEEEcCcchHHHHHHHH----hC-CCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccc
Q 026513           68 IKGGELFLDYGTGSGILGIAAIK----FG-AAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVD  142 (237)
Q Consensus        68 ~~~~~~vLDlG~G~G~~~~~la~----~~-~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~  142 (237)
                      ++| ..|++.|+--|.-++.+|.    .| ..+|+++|+|-...+-+...     .+    ++.+++++..++-..+-++
T Consensus        68 ~~P-~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e-----~p----~i~f~egss~dpai~eqi~  137 (237)
T COG3510          68 LQP-SLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAARE-----VP----DILFIEGSSTDPAIAEQIR  137 (237)
T ss_pred             cCC-ceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhc-----CC----CeEEEeCCCCCHHHHHHHH
Confidence            344 4799999999877776653    23 25699999987664432211     23    3889999877544332222


Q ss_pred             ccccccccccccCCCCCCceeEEEEeCChHHHH---HHHHHHhHhcCCCeEEEEe
Q 026513          143 GVVEDLSSHKIRGISQTEKYDVVIANILLNPLL---QLADHIVSYAKPGAVVGIS  194 (237)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~fD~I~~n~~~~~~~---~~l~~~~~~L~~gG~liis  194 (237)
                                  ... .++.-+.+|--.-|+..   .-++.+..+|.-|-++++-
T Consensus       138 ------------~~~-~~y~kIfvilDsdHs~~hvLAel~~~~pllsaG~Y~vVe  179 (237)
T COG3510         138 ------------RLK-NEYPKIFVILDSDHSMEHVLAELKLLAPLLSAGDYLVVE  179 (237)
T ss_pred             ------------HHh-cCCCcEEEEecCCchHHHHHHHHHHhhhHhhcCceEEEe
Confidence                        111 12222333333333433   4456677899999999984

>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase

Probab=86.63  E-value=9.4  Score=32.72  Aligned_cols=100  Identities=16%  Similarity=0.236  Sum_probs=59.1

Q ss_pred             ccCCCeEEEEcC--cchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccc
Q 026513           68 IKGGELFLDYGT--GSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVV  145 (237)
Q Consensus        68 ~~~~~~vLDlG~--G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  145 (237)
                      +++|.+||-.|.  |.|..++.+++....++++++.+++..+.+++    .|...   -+.....+...        +  
T Consensus       136 ~~~g~~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~~s~~~~~~~~~----lGa~~---vi~~~~~~~~~--------~--  198 (325)
T TIGR02825       136 VKGGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKVAYLKK----LGFDV---AFNYKTVKSLE--------E--  198 (325)
T ss_pred             CCCCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH----cCCCE---EEeccccccHH--------H--
Confidence            567889999884  35677777776534469999999887776653    24321   01111111110        0  


Q ss_pred             cccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEec
Q 026513          146 EDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISG  195 (237)
Q Consensus       146 ~~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~  195 (237)
                            .+.... .+.+|+|+-...-    ..+....+.|+++|+++..+
T Consensus       199 ------~~~~~~-~~gvdvv~d~~G~----~~~~~~~~~l~~~G~iv~~G  237 (325)
T TIGR02825       199 ------TLKKAS-PDGYDCYFDNVGG----EFSNTVIGQMKKFGRIAICG  237 (325)
T ss_pred             ------HHHHhC-CCCeEEEEECCCH----HHHHHHHHHhCcCcEEEEec
Confidence                  001111 3469999864422    23466788899999999754

Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.

>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family

Probab=86.58  E-value=5.4  Score=34.32  Aligned_cols=101  Identities=22%  Similarity=0.274  Sum_probs=58.1

Q ss_pred             ccCCCeEEEEcCcc-hHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccc
Q 026513           68 IKGGELFLDYGTGS-GILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVE  146 (237)
Q Consensus        68 ~~~~~~vLDlG~G~-G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  146 (237)
                      +.+|.+||..|+|. |..++.+++.-..+++++..+++..+.+++.    +...   -+.....+..+            
T Consensus       157 l~~g~~vLI~g~g~vG~~a~~lA~~~g~~v~~~~~s~~~~~~~~~~----g~~~---v~~~~~~~~~~------------  217 (337)
T cd08261         157 VTAGDTVLVVGAGPIGLGVIQVAKARGARVIVVDIDDERLEFAREL----GADD---TINVGDEDVAA------------  217 (337)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEECCCHHHHHHHHHh----CCCE---EecCcccCHHH------------
Confidence            56788999998764 6666667765445688888888777766432    2221   01111111110            


Q ss_pred             ccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEec
Q 026513          147 DLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISG  195 (237)
Q Consensus       147 ~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~  195 (237)
                           .+........+|+++.....   ...+..+.+.|+++|.++..+
T Consensus       218 -----~l~~~~~~~~vd~vld~~g~---~~~~~~~~~~l~~~G~~i~~g  258 (337)
T cd08261         218 -----RLRELTDGEGADVVIDATGN---PASMEEAVELVAHGGRVVLVG  258 (337)
T ss_pred             -----HHHHHhCCCCCCEEEECCCC---HHHHHHHHHHHhcCCEEEEEc
Confidence                 01112223469999875421   234566777888999988644

This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,

>PRK05876 short chain dehydrogenase; Provisional

Probab=86.41  E-value=11  Score=31.75  Aligned_cols=59  Identities=24%  Similarity=0.216  Sum_probs=37.6

Q ss_pred             CCCeEEEEcCcchH---HHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccc
Q 026513           70 GGELFLDYGTGSGI---LGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFT  134 (237)
Q Consensus        70 ~~~~vLDlG~G~G~---~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~  134 (237)
                      .++++|-.|+++|.   ++..+++.|. +|+.++.++..++...+.+...+.     ++.++..|+.+
T Consensus         5 ~~k~vlVTGas~gIG~ala~~La~~G~-~Vv~~~r~~~~l~~~~~~l~~~~~-----~~~~~~~Dv~d   66 (275)
T PRK05876          5 PGRGAVITGGASGIGLATGTEFARRGA-RVVLGDVDKPGLRQAVNHLRAEGF-----DVHGVMCDVRH   66 (275)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCC-----eEEEEeCCCCC
Confidence            36788888877652   3334445554 588999998777665555543332     36677788764

>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=86.37  E-value=16  Score=31.18  Aligned_cols=124  Identities=10%  Similarity=0.126  Sum_probs=63.5

Q ss_pred             CeEEEEcCcc-h-HHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHc--CCCCCcceEEeccCccccccccccccccccc
Q 026513           72 ELFLDYGTGS-G-ILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALN--NIGPKKMKLHLVPDRTFTASMNERVDGVVED  147 (237)
Q Consensus        72 ~~vLDlG~G~-G-~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~--~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  147 (237)
                      .+|.-+|+|. | .++..++..|. +|+.+|.+++.++.+++.+...  ++..    . ...+......    .+...+.
T Consensus         4 ~~I~ViGaG~mG~~iA~~la~~G~-~V~l~d~~~~~l~~~~~~i~~~~~~l~~----~-~~~g~~~~~~----~~~~~~~   73 (291)
T PRK06035          4 KVIGVVGSGVMGQGIAQVFARTGY-DVTIVDVSEEILKNAMELIESGPYGLRN----L-VEKGKMSEDE----AKAIMAR   73 (291)
T ss_pred             cEEEEECccHHHHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhhhhhHHH----H-HHcCCCCHHH----HHHHHhC
Confidence            3688889985 3 44555556654 6999999999998776654432  1100    0 0000000000    0000000


Q ss_pred             cccccccCCCCCCceeEEEEeCChH--HHHHHHHHHhHhcCCCeEEEEeccCCCCHHHHHHHH
Q 026513          148 LSSHKIRGISQTEKYDVVIANILLN--PLLQLADHIVSYAKPGAVVGISGILSEQLPHIINRY  208 (237)
Q Consensus       148 ~~~~~~~~~~~~~~fD~I~~n~~~~--~~~~~l~~~~~~L~~gG~liis~~~~~~~~~~~~~~  208 (237)
                      ..  .-.....-...|+|+...+-.  ....++..+...++++..+ +|..-.-...++...+
T Consensus        74 i~--~~~~~~~~~~aDlVieav~e~~~~k~~~~~~l~~~~~~~~il-~S~tsg~~~~~la~~~  133 (291)
T PRK06035         74 IR--TSTSYESLSDADFIVEAVPEKLDLKRKVFAELERNVSPETII-ASNTSGIMIAEIATAL  133 (291)
T ss_pred             cE--eeCCHHHhCCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEE-EEcCCCCCHHHHHhhc
Confidence            00  000000124579998866543  3567788888888887754 4544444555565554

>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=86.33  E-value=5.2  Score=35.91  Aligned_cols=49  Identities=20%  Similarity=0.191  Sum_probs=31.8

Q ss_pred             ceeEEEEeCC----------hHHHHHHHHHHhHhcCCCeEEEE-eccCCCCHHHHHHHHh
Q 026513          161 KYDVVIANIL----------LNPLLQLADHIVSYAKPGAVVGI-SGILSEQLPHIINRYS  209 (237)
Q Consensus       161 ~fD~I~~n~~----------~~~~~~~l~~~~~~L~~gG~lii-s~~~~~~~~~~~~~~~  209 (237)
                      ..|+++...|          +.......+.+...|++|-.+++ |....-..+++..-+.
T Consensus        84 ~~dv~iI~VPTPl~~~~~pDls~v~~aa~sIa~~L~kG~LVIlEST~~PGTTe~v~~pll  143 (436)
T COG0677          84 ECDVFIICVPTPLKKYREPDLSYVESAARSIAPVLKKGDLVILESTTPPGTTEEVVKPLL  143 (436)
T ss_pred             cCCEEEEEecCCcCCCCCCChHHHHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHHHHH
Confidence            6787765433          45556678889999999999998 4444333444444333

>PRK06124 gluconate 5-dehydrogenase; Provisional

Probab=86.32  E-value=12  Score=30.58  Aligned_cols=59  Identities=14%  Similarity=0.106  Sum_probs=37.7

Q ss_pred             CCCeEEEEcCcchH---HHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccc
Q 026513           70 GGELFLDYGTGSGI---LGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFT  134 (237)
Q Consensus        70 ~~~~vLDlG~G~G~---~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~  134 (237)
                      .++++|-.|++.|.   ++..+++.|. +|+.++-++..++...+.+...+.     ++.++.+|+.+
T Consensus        10 ~~k~ilItGas~~IG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~-----~~~~~~~Dl~~   71 (256)
T PRK06124         10 AGQVALVTGSARGLGFEIARALAGAGA-HVLVNGRNAATLEAAVAALRAAGG-----AAEALAFDIAD   71 (256)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHcCC-eEEEEeCCHHHHHHHHHHHHhcCC-----ceEEEEccCCC
Confidence            47789988865542   2233444554 699999998777665555554432     26677778764

>PRK07814 short chain dehydrogenase; Provisional

Probab=86.26  E-value=11  Score=31.12  Aligned_cols=58  Identities=17%  Similarity=0.150  Sum_probs=37.1

Q ss_pred             CCCeEEEEcCcchHHHHH----HHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccc
Q 026513           70 GGELFLDYGTGSGILGIA----AIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFT  134 (237)
Q Consensus        70 ~~~~vLDlG~G~G~~~~~----la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~  134 (237)
                      +++++|-.|++. .++..    ++..|. +|++++.++..++...+.+...+.     ++.++..|..+
T Consensus         9 ~~~~vlItGasg-gIG~~~a~~l~~~G~-~Vi~~~r~~~~~~~~~~~l~~~~~-----~~~~~~~D~~~   70 (263)
T PRK07814          9 DDQVAVVTGAGR-GLGAAIALAFAEAGA-DVLIAARTESQLDEVAEQIRAAGR-----RAHVVAADLAH   70 (263)
T ss_pred             CCCEEEEECCCC-hHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCC-----cEEEEEccCCC
Confidence            467899888654 44443    444555 799999998777665555543321     36677788764

>PRK07109 short chain dehydrogenase; Provisional

Probab=86.03  E-value=8.5  Score=33.51  Aligned_cols=59  Identities=14%  Similarity=0.088  Sum_probs=38.5

Q ss_pred             CCCeEEEEcCcchH---HHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccc
Q 026513           70 GGELFLDYGTGSGI---LGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFT  134 (237)
Q Consensus        70 ~~~~vLDlG~G~G~---~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~  134 (237)
                      .++++|-.|+++|.   ++..+++.| .+|+.++-++..++...+.+...+.     ++.++.+|+.+
T Consensus         7 ~~k~vlITGas~gIG~~la~~la~~G-~~Vvl~~R~~~~l~~~~~~l~~~g~-----~~~~v~~Dv~d   68 (334)
T PRK07109          7 GRQVVVITGASAGVGRATARAFARRG-AKVVLLARGEEGLEALAAEIRAAGG-----EALAVVADVAD   68 (334)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHHcCC-----cEEEEEecCCC
Confidence            35678888876552   233344555 4688999998887776666654442     36677888764

>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase

Probab=85.95  E-value=7  Score=33.76  Aligned_cols=100  Identities=12%  Similarity=0.116  Sum_probs=59.9

Q ss_pred             ccCCCeEEEEcC--cchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccC-cccccccccccccc
Q 026513           68 IKGGELFLDYGT--GSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPD-RTFTASMNERVDGV  144 (237)
Q Consensus        68 ~~~~~~vLDlG~--G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~-d~~~~~~~~~~~~~  144 (237)
                      +++|.+||-.|+  |.|.+++.+++.-..++++++.+++..+.+++.+   |...   -+..... +..+          
T Consensus       149 ~~~g~~VlI~Ga~G~vG~~aiqlAk~~G~~Vi~~~~~~~~~~~~~~~l---Ga~~---vi~~~~~~~~~~----------  212 (338)
T cd08295         149 PKKGETVFVSAASGAVGQLVGQLAKLKGCYVVGSAGSDEKVDLLKNKL---GFDD---AFNYKEEPDLDA----------  212 (338)
T ss_pred             CCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhc---CCce---eEEcCCcccHHH----------
Confidence            567899999986  3466777777653446899998888777766432   3321   0111111 1110          


Q ss_pred             ccccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEec
Q 026513          145 VEDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISG  195 (237)
Q Consensus       145 ~~~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~  195 (237)
                             .+.... ...+|+|+-...-    ..+....+.|+++|.++..+
T Consensus       213 -------~i~~~~-~~gvd~v~d~~g~----~~~~~~~~~l~~~G~iv~~G  251 (338)
T cd08295         213 -------ALKRYF-PNGIDIYFDNVGG----KMLDAVLLNMNLHGRIAACG  251 (338)
T ss_pred             -------HHHHhC-CCCcEEEEECCCH----HHHHHHHHHhccCcEEEEec
Confidence                   001111 2469999854421    34567788899999998754

This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in

>PLN02494 adenosylhomocysteinase

Probab=85.94  E-value=3.6  Score=37.84  Aligned_cols=90  Identities=19%  Similarity=0.191  Sum_probs=54.4

Q ss_pred             ccCCCeEEEEcCcc-hHHHHHHH-HhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccc
Q 026513           68 IKGGELFLDYGTGS-GILGIAAI-KFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVV  145 (237)
Q Consensus        68 ~~~~~~vLDlG~G~-G~~~~~la-~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  145 (237)
                      ...|++|+-+|+|. |......+ .+|. +|+++|.++.....|..    .+..       +.  +..            
T Consensus       251 ~LaGKtVvViGyG~IGr~vA~~aka~Ga-~VIV~e~dp~r~~eA~~----~G~~-------vv--~le------------  304 (477)
T PLN02494        251 MIAGKVAVICGYGDVGKGCAAAMKAAGA-RVIVTEIDPICALQALM----EGYQ-------VL--TLE------------  304 (477)
T ss_pred             ccCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCchhhHHHHh----cCCe-------ec--cHH------------
Confidence            34689999999997 43333333 3454 69999999865433321    2221       11  111            


Q ss_pred             cccccccccCCCCCCceeEEEEeCChHHHHHH-HHHHhHhcCCCeEEEEeccC
Q 026513          146 EDLSSHKIRGISQTEKYDVVIANILLNPLLQL-ADHIVSYAKPGAVVGISGIL  197 (237)
Q Consensus       146 ~~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~-l~~~~~~L~~gG~liis~~~  197 (237)
                               ..  -...|+|++...-   ..+ .......+++||+|+..+..
T Consensus       305 ---------Ea--l~~ADVVI~tTGt---~~vI~~e~L~~MK~GAiLiNvGr~  343 (477)
T PLN02494        305 ---------DV--VSEADIFVTTTGN---KDIIMVDHMRKMKNNAIVCNIGHF  343 (477)
T ss_pred             ---------HH--HhhCCEEEECCCC---ccchHHHHHhcCCCCCEEEEcCCC
Confidence                     00  1357999985532   222 35677789999999997664

>PRK07063 short chain dehydrogenase; Provisional

Probab=85.92  E-value=12  Score=30.71  Aligned_cols=61  Identities=26%  Similarity=0.315  Sum_probs=38.6

Q ss_pred             CCCeEEEEcCcchH---HHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccc
Q 026513           70 GGELFLDYGTGSGI---LGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFT  134 (237)
Q Consensus        70 ~~~~vLDlG~G~G~---~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~  134 (237)
                      .++++|-.|+++|.   ++..+++.|. +|+.++.++..++...+.+.......   ++.++..|+.+
T Consensus         6 ~~k~vlVtGas~gIG~~~a~~l~~~G~-~vv~~~r~~~~~~~~~~~~~~~~~~~---~~~~~~~Dl~~   69 (260)
T PRK07063          6 AGKVALVTGAAQGIGAAIARAFAREGA-AVALADLDAALAERAAAAIARDVAGA---RVLAVPADVTD   69 (260)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhccCCc---eEEEEEccCCC
Confidence            36789988876552   3334445554 58999998887776666555421111   36677888764

>PTZ00357 methyltransferase; Provisional

Probab=85.89  E-value=2.5  Score=40.61  Aligned_cols=109  Identities=11%  Similarity=0.070  Sum_probs=60.1

Q ss_pred             eEEEEcCcchHHHHHHH---H-hCC-CeEEEEeCCHHHHHHHHHHHHH-cCCCCC----cceEEeccCcccccccccccc
Q 026513           73 LFLDYGTGSGILGIAAI---K-FGA-AMSVGADIDPQAIKSAHQNAAL-NNIGPK----KMKLHLVPDRTFTASMNERVD  142 (237)
Q Consensus        73 ~vLDlG~G~G~~~~~la---~-~~~-~~v~~vD~s~~~i~~a~~~~~~-~~~~~~----~~~v~~~~~d~~~~~~~~~~~  142 (237)
                      .|+-+|+|.|-+.....   . .+. -+|+++|-++.++...+.+... ....+.    .-+|+++..|+++-..++.  
T Consensus       703 VImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~--  780 (1072)
T PTZ00357        703 HLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAE--  780 (1072)
T ss_pred             EEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCcccccccccc--
Confidence            58999999997655433   2 232 4699999998776555554322 122110    1148889999874321100  


Q ss_pred             ccccccccccccCCCCCCceeEEEEeCC--h---HHHHHHHHHHhHhcCC----CeE
Q 026513          143 GVVEDLSSHKIRGISQTEKYDVVIANIL--L---NPLLQLADHIVSYAKP----GAV  190 (237)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~fD~I~~n~~--~---~~~~~~l~~~~~~L~~----gG~  190 (237)
                             .........-+++|+||+-..  +   +...+.++-+.+.||+    +|+
T Consensus       781 -------~~s~~~P~~~gKaDIVVSELLGSFGDNELSPECLDGaQrfLKdiqhsdGI  830 (1072)
T PTZ00357        781 -------NGSLTLPADFGLCDLIVSELLGSLGDNELSPECLEAFHAQLEDIQLSRGI  830 (1072)
T ss_pred             -------cccccccccccccceehHhhhcccccccCCHHHHHHHHHhhhhhcccccc
Confidence                   000000111248999997332  1   2224566666667765    675

>PRK07904 short chain dehydrogenase; Provisional

Probab=85.88  E-value=3.7  Score=34.06  Aligned_cols=62  Identities=15%  Similarity=0.073  Sum_probs=38.6

Q ss_pred             cCCCeEEEEcCcchH---HHHHHHHhCCCeEEEEeCCHHH-HHHHHHHHHHcCCCCCcceEEeccCcccc
Q 026513           69 KGGELFLDYGTGSGI---LGIAAIKFGAAMSVGADIDPQA-IKSAHQNAALNNIGPKKMKLHLVPDRTFT  134 (237)
Q Consensus        69 ~~~~~vLDlG~G~G~---~~~~la~~~~~~v~~vD~s~~~-i~~a~~~~~~~~~~~~~~~v~~~~~d~~~  134 (237)
                      ..+++||-.|+++|.   ++..+++.|..+|+.++-++.. ++.+.+.+...+..    ++.++..|+.+
T Consensus         6 ~~~~~vlItGas~giG~~la~~l~~~gg~~V~~~~r~~~~~~~~~~~~l~~~~~~----~v~~~~~D~~~   71 (253)
T PRK07904          6 GNPQTILLLGGTSEIGLAICERYLKNAPARVVLAALPDDPRRDAAVAQMKAAGAS----SVEVIDFDALD   71 (253)
T ss_pred             CCCcEEEEEcCCcHHHHHHHHHHHhcCCCeEEEEeCCcchhHHHHHHHHHhcCCC----ceEEEEecCCC
Confidence            446789999986652   2333445555678888887764 55554445443322    37777888764

>PRK06249 2-dehydropantoate 2-reductase; Provisional

Probab=85.69  E-value=6  Score=34.16  Aligned_cols=49  Identities=18%  Similarity=0.009  Sum_probs=34.2

Q ss_pred             CceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEeccCCCCHHHHHHHH
Q 026513          160 EKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILSEQLPHIINRY  208 (237)
Q Consensus       160 ~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~~~~~~~~~~~~~~  208 (237)
                      +.+|+|+.........+.++.+..++++++.++....--.....+...+
T Consensus        71 ~~~D~vilavK~~~~~~~~~~l~~~~~~~~~iv~lqNG~~~~e~l~~~~  119 (313)
T PRK06249         71 PPCDWVLVGLKTTANALLAPLIPQVAAPDAKVLLLQNGLGVEEQLREIL  119 (313)
T ss_pred             CCCCEEEEEecCCChHhHHHHHhhhcCCCCEEEEecCCCCcHHHHHHHC
Confidence            5799999876665666788888889999998776544333344454444

>PF07669 Eco57I: Eco57I restriction-modification methylase; InterPro: IPR011639 This entry contains restriction modification methylases, which in the case of endonuclease Eco57I is found adjacent to the DNA cleavage domain, which recognises asymmetric DNA sequence 5'-CTGAAG [, ]

Probab=85.61  E-value=3.1  Score=29.97  Aligned_cols=47  Identities=15%  Similarity=0.166  Sum_probs=29.4

Q ss_pred             ceeEEEEeCChHH-----------------HHHHHHHHhHhcCCCeEEEEe---ccC--CCCHHHHHHHHh
Q 026513          161 KYDVVIANILLNP-----------------LLQLADHIVSYAKPGAVVGIS---GIL--SEQLPHIINRYS  209 (237)
Q Consensus       161 ~fD~I~~n~~~~~-----------------~~~~l~~~~~~L~~gG~liis---~~~--~~~~~~~~~~~~  209 (237)
                      +||+|+.|||...                 +.-++.....+|  +|.+.+.   .++  ......+.+.+.
T Consensus         2 kFD~VIGNPPY~~~~~~~~~~~~~~~~~dlY~~Fie~~~~ll--~G~~~~I~P~~~l~~~~~~~~lR~~l~   70 (106)
T PF07669_consen    2 KFDVVIGNPPYIKIKSLSKKKKKKKKKSDLYILFIEKSLNLL--NGYLSFITPNSFLKSGKYGKKLRKFLL   70 (106)
T ss_pred             CcCEEEECCCChhhccccchhhcccccCcHHHHHHHHHHHHh--CCeEEEEeChHHhCcCchHHHHHHHHh
Confidence            6999999999522                 223577777777  8887442   445  333445555544

The methylase causes specific methylation on A-5 on one strand, the other strand being methylated by the Eco57IB methylase []. ; GO: 0003677 DNA binding, 0003824 catalytic activity, 0006304 DNA modification

>PRK07576 short chain dehydrogenase; Provisional

Probab=85.52  E-value=11  Score=31.29  Aligned_cols=58  Identities=14%  Similarity=0.028  Sum_probs=34.8

Q ss_pred             CCCeEEEEcCcchHHHHH----HHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccc
Q 026513           70 GGELFLDYGTGSGILGIA----AIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFT  134 (237)
Q Consensus        70 ~~~~vLDlG~G~G~~~~~----la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~  134 (237)
                      +++++|-.|.+. .++..    ++..| .+|++++.++..++...+.+...+.     ++.++..|+.+
T Consensus         8 ~~k~ilItGasg-gIG~~la~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~-----~~~~~~~Dv~~   69 (264)
T PRK07576          8 AGKNVVVVGGTS-GINLGIAQAFARAG-ANVAVASRSQEKVDAAVAQLQQAGP-----EGLGVSADVRD   69 (264)
T ss_pred             CCCEEEEECCCc-hHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHHhCC-----ceEEEECCCCC
Confidence            467888888644 44443    33444 4599999988776655444443321     25566777754

>cd05285 sorbitol_DH Sorbitol dehydrogenase

Probab=85.48  E-value=5.9  Score=34.27  Aligned_cols=104  Identities=29%  Similarity=0.360  Sum_probs=58.0

Q ss_pred             ccCCCeEEEEcCcc-hHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccc
Q 026513           68 IKGGELFLDYGTGS-GILGIAAIKF-GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVV  145 (237)
Q Consensus        68 ~~~~~~vLDlG~G~-G~~~~~la~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  145 (237)
                      +.+|.+||-.|+|. |..+..+++. |...+++++.+++..+.+++.    +...    +  +..+-.+.      +.+.
T Consensus       160 ~~~g~~vlI~g~g~vG~~a~~lak~~G~~~v~~~~~~~~~~~~~~~~----g~~~----v--i~~~~~~~------~~~~  223 (343)
T cd05285         160 VRPGDTVLVFGAGPIGLLTAAVAKAFGATKVVVTDIDPSRLEFAKEL----GATH----T--VNVRTEDT------PESA  223 (343)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHc----CCcE----E--eccccccc------hhHH
Confidence            56788888887764 5566666654 555589998888777666442    3221    1  11110000      0000


Q ss_pred             cccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEec
Q 026513          146 EDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISG  195 (237)
Q Consensus       146 ~~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~  195 (237)
                      +     .+........+|+|+......   ..+....+.|+++|+++..+
T Consensus       224 ~-----~~~~~~~~~~~d~vld~~g~~---~~~~~~~~~l~~~G~~v~~g  265 (343)
T cd05285         224 E-----KIAELLGGKGPDVVIECTGAE---SCIQTAIYATRPGGTVVLVG  265 (343)
T ss_pred             H-----HHHHHhCCCCCCEEEECCCCH---HHHHHHHHHhhcCCEEEEEc
Confidence            0     011122245699999654322   24566778889999988654

Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1

Probab=85.44  E-value=3.3  Score=31.34  Aligned_cols=50  Identities=16%  Similarity=0.171  Sum_probs=37.0

Q ss_pred             CCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEeccCCCCHHHHHHHH
Q 026513          159 TEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILSEQLPHIINRY  208 (237)
Q Consensus       159 ~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~~~~~~~~~~~~~~  208 (237)
                      ..+||+|+...-.......++.+...+.++..+++...--...+.+.+.+
T Consensus        65 ~~~~D~viv~vKa~~~~~~l~~l~~~~~~~t~iv~~qNG~g~~~~l~~~~  114 (151)
T PF02558_consen   65 AGPYDLVIVAVKAYQLEQALQSLKPYLDPNTTIVSLQNGMGNEEVLAEYF  114 (151)
T ss_dssp             HSTESEEEE-SSGGGHHHHHHHHCTGEETTEEEEEESSSSSHHHHHHCHS
T ss_pred             cCCCcEEEEEecccchHHHHHHHhhccCCCcEEEEEeCCCCcHHHHHHHc
Confidence            46899999988777778889999999999988887655444444444444

1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....

>PRK07097 gluconate 5-dehydrogenase; Provisional

Probab=85.20  E-value=14  Score=30.55  Aligned_cols=59  Identities=24%  Similarity=0.169  Sum_probs=39.2

Q ss_pred             CCCeEEEEcCcchH---HHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccc
Q 026513           70 GGELFLDYGTGSGI---LGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFT  134 (237)
Q Consensus        70 ~~~~vLDlG~G~G~---~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~  134 (237)
                      .++++|-.|++.|.   ++..++..|. +++.++-++..++...+.+...+.     ++.++..|+.+
T Consensus         9 ~~k~~lItGa~~~iG~~ia~~l~~~G~-~vv~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~Dl~~   70 (265)
T PRK07097          9 KGKIALITGASYGIGFAIAKAYAKAGA-TIVFNDINQELVDKGLAAYRELGI-----EAHGYVCDVTD   70 (265)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHHHhcCC-----ceEEEEcCCCC
Confidence            46789999988763   3344555655 488889888877766666654332     36677788764

>PRK08324 short chain dehydrogenase; Validated

Probab=85.17  E-value=6.6  Score=37.87  Aligned_cols=58  Identities=24%  Similarity=0.182  Sum_probs=35.9

Q ss_pred             CCCeEEEEcCcchH---HHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccc
Q 026513           70 GGELFLDYGTGSGI---LGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFT  134 (237)
Q Consensus        70 ~~~~vLDlG~G~G~---~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~  134 (237)
                      +|+++|-.|++.|.   ++..++..|. +|+++|.++..++.+.+.+...  .    .+.++..|+.+
T Consensus       421 ~gk~vLVTGasggIG~~la~~L~~~Ga-~Vvl~~r~~~~~~~~~~~l~~~--~----~v~~v~~Dvtd  481 (681)
T PRK08324        421 AGKVALVTGAAGGIGKATAKRLAAEGA-CVVLADLDEEAAEAAAAELGGP--D----RALGVACDVTD  481 (681)
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHHCcC-EEEEEeCCHHHHHHHHHHHhcc--C----cEEEEEecCCC
Confidence            46788888865441   2223444554 6999999998776655444322  1    36677777764

>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional

Probab=84.68  E-value=11  Score=31.30  Aligned_cols=58  Identities=14%  Similarity=0.036  Sum_probs=32.5

Q ss_pred             CCCeEEEEcCcch-HHHHHH----HHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccc
Q 026513           70 GGELFLDYGTGSG-ILGIAA----IKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFT  134 (237)
Q Consensus        70 ~~~~vLDlG~G~G-~~~~~l----a~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~  134 (237)
                      .|+++|-.|+++| .++..+    ++.|. +|+.++.+....+..++.....+  .    +.++..|+.+
T Consensus         9 ~~k~~lItGas~g~GIG~a~a~~la~~G~-~v~l~~r~~~~~~~~~~~~~~~~--~----~~~~~~D~~~   71 (258)
T PRK07533          9 AGKRGLVVGIANEQSIAWGCARAFRALGA-ELAVTYLNDKARPYVEPLAEELD--A----PIFLPLDVRE   71 (258)
T ss_pred             CCCEEEEECCCCCCcHHHHHHHHHHHcCC-EEEEEeCChhhHHHHHHHHHhhc--c----ceEEecCcCC
Confidence            4678999998762 555444    44554 58888887654333333322211  1    3355677654

>cd08293 PTGR2 Prostaglandin reductase

Probab=84.65  E-value=6.1  Score=34.10  Aligned_cols=100  Identities=17%  Similarity=0.245  Sum_probs=58.3

Q ss_pred             ccCC--CeEEEEcC--cchHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccc
Q 026513           68 IKGG--ELFLDYGT--GSGILGIAAIKF-GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVD  142 (237)
Q Consensus        68 ~~~~--~~vLDlG~--G~G~~~~~la~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~  142 (237)
                      +++|  .+||-.|+  |.|..++.+++. |..+|++++.+++..+.+++.   .|...   -+.....++.+        
T Consensus       150 ~~~g~~~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~~~~~~~~~---lGa~~---vi~~~~~~~~~--------  215 (345)
T cd08293         150 ITPGANQTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDEKCQLLKSE---LGFDA---AINYKTDNVAE--------  215 (345)
T ss_pred             CCCCCCCEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHh---cCCcE---EEECCCCCHHH--------
Confidence            3444  78999886  356777777765 554799999998776666543   23321   01111111110        


Q ss_pred             ccccccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEec
Q 026513          143 GVVEDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISG  195 (237)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~  195 (237)
                               .+.... ...+|+|+....-.    .+....+.|+++|.++.-+
T Consensus       216 ---------~i~~~~-~~gvd~vid~~g~~----~~~~~~~~l~~~G~iv~~G  254 (345)
T cd08293         216 ---------RLRELC-PEGVDVYFDNVGGE----ISDTVISQMNENSHIILCG  254 (345)
T ss_pred             ---------HHHHHC-CCCceEEEECCCcH----HHHHHHHHhccCCEEEEEe
Confidence                     011122 24699998644322    2366778899999998743

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid

>PRK10669 putative cation:proton antiport protein; Provisional

Probab=84.63  E-value=8.2  Score=36.24  Aligned_cols=95  Identities=12%  Similarity=0.079  Sum_probs=55.3

Q ss_pred             CeEEEEcCcc-hHH-HHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccccc
Q 026513           72 ELFLDYGTGS-GIL-GIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDLS  149 (237)
Q Consensus        72 ~~vLDlG~G~-G~~-~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~  149 (237)
                      .+++-+|||. |.. +..+.+.+ ..++.+|.+++.++.+++.    +       ...+.+|..++.+-           
T Consensus       418 ~hiiI~G~G~~G~~la~~L~~~g-~~vvvId~d~~~~~~~~~~----g-------~~~i~GD~~~~~~L-----------  474 (558)
T PRK10669        418 NHALLVGYGRVGSLLGEKLLAAG-IPLVVIETSRTRVDELRER----G-------IRAVLGNAANEEIM-----------  474 (558)
T ss_pred             CCEEEECCChHHHHHHHHHHHCC-CCEEEEECCHHHHHHHHHC----C-------CeEEEcCCCCHHHH-----------
Confidence            4678788876 433 22333444 4599999999988877632    3       55778888753211           


Q ss_pred             cccccCCCCCCceeEEEEeCChHHHH-HHHHHHhHhcCCCeEEEEec
Q 026513          150 SHKIRGISQTEKYDVVIANILLNPLL-QLADHIVSYAKPGAVVGISG  195 (237)
Q Consensus       150 ~~~~~~~~~~~~fD~I~~n~~~~~~~-~~l~~~~~~L~~gG~liis~  195 (237)
                          +.. .-+++|.+++..+-+... .+... .+...|+..++...
T Consensus       475 ----~~a-~i~~a~~viv~~~~~~~~~~iv~~-~~~~~~~~~iiar~  515 (558)
T PRK10669        475 ----QLA-HLDCARWLLLTIPNGYEAGEIVAS-AREKRPDIEIIARA  515 (558)
T ss_pred             ----Hhc-CccccCEEEEEcCChHHHHHHHHH-HHHHCCCCeEEEEE
Confidence                111 135789777654433322 23333 34457777777653

>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family

Probab=84.48  E-value=7.6  Score=34.37  Aligned_cols=102  Identities=15%  Similarity=0.139  Sum_probs=56.5

Q ss_pred             ccCCCeEEEEcCcc-hHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccC---cccccccccccc
Q 026513           68 IKGGELFLDYGTGS-GILGIAAIKF-GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPD---RTFTASMNERVD  142 (237)
Q Consensus        68 ~~~~~~vLDlG~G~-G~~~~~la~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~---d~~~~~~~~~~~  142 (237)
                      +++|.+||-.|+|. |..++.+++. |..++++++.++...+.+++    .++..   -+.....   +..+        
T Consensus       201 ~~~g~~VlV~g~g~vG~~ai~lA~~~G~~~vi~~~~~~~~~~~~~~----~g~~~---~v~~~~~~~~~~~~--------  265 (384)
T cd08265         201 FRPGAYVVVYGAGPIGLAAIALAKAAGASKVIAFEISEERRNLAKE----MGADY---VFNPTKMRDCLSGE--------  265 (384)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH----cCCCE---EEcccccccccHHH--------
Confidence            45788888887754 4444555554 65579999998876555543    24321   0111100   1100        


Q ss_pred             ccccccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEec
Q 026513          143 GVVEDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISG  195 (237)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~  195 (237)
                               .+........+|+|+.... . ....+..+.+.|+++|.++..+
T Consensus       266 ---------~v~~~~~g~gvDvvld~~g-~-~~~~~~~~~~~l~~~G~~v~~g  307 (384)
T cd08265         266 ---------KVMEVTKGWGADIQVEAAG-A-PPATIPQMEKSIAINGKIVYIG  307 (384)
T ss_pred             ---------HHHHhcCCCCCCEEEECCC-C-cHHHHHHHHHHHHcCCEEEEEC
Confidence                     0112223456999986432 1 1234566677888999998654

This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi

>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family

Probab=84.41  E-value=22  Score=30.02  Aligned_cols=125  Identities=13%  Similarity=0.025  Sum_probs=68.9

Q ss_pred             HHHHHHHHHhhccC-CCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHH-HHHHHHHHHHHcCCCCCcceEEeccCcccc
Q 026513           57 TKLCLLLLRRLIKG-GELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQ-AIKSAHQNAALNNIGPKKMKLHLVPDRTFT  134 (237)
Q Consensus        57 ~~~~~~~l~~~~~~-~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~-~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~  134 (237)
                      ++.+-+.+...+.. ...|+.+|||-=+....+....  .+.-.|++-. +++.-++.+...+... .-+..++..|+..
T Consensus        67 tr~~D~~i~~~~~~g~~qvV~LGaGlDTr~~Rl~~~~--~~~~~EvD~P~v~~~K~~~l~~~~~~~-~~~~~~v~~Dl~~  143 (260)
T TIGR00027        67 TRFFDDFLLAAVAAGIRQVVILGAGLDTRAYRLPWPD--GTRVFEVDQPAVLAFKEKVLAELGAEP-PAHRRAVPVDLRQ  143 (260)
T ss_pred             HHHHHHHHHHHHhcCCcEEEEeCCccccHHHhcCCCC--CCeEEECCChHHHHHHHHHHHHcCCCC-CCceEEeccCchh
Confidence            34444455444333 3479999999887776664332  2445555443 4555555555443211 1146777888752


Q ss_pred             ccccccccccccccccccccCCCCCCceeEEEEeCCh-----HHHHHHHHHHhHhcCCCeEEEEecc
Q 026513          135 ASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILL-----NPLLQLADHIVSYAKPGAVVGISGI  196 (237)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~-----~~~~~~l~~~~~~L~~gG~liis~~  196 (237)
                              +|.+.+.    ..-......-++++-.++     ....+++..+.....||+.+++..+
T Consensus       144 --------~w~~~L~----~~gfd~~~ptl~i~EGvl~YL~~~~v~~ll~~i~~~~~~gs~l~~d~~  198 (260)
T TIGR00027       144 --------DWPAALA----AAGFDPTAPTAWLWEGLLMYLTEEAVDALLAFIAELSAPGSRLAFDYV  198 (260)
T ss_pred             --------hHHHHHH----hCCCCCCCCeeeeecchhhcCCHHHHHHHHHHHHHhCCCCcEEEEEec
Confidence                    1111110    011112345566665554     3345778888888889999998644

This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.

>PRK09242 tropinone reductase; Provisional

Probab=84.31  E-value=17  Score=29.76  Aligned_cols=61  Identities=20%  Similarity=0.185  Sum_probs=38.3

Q ss_pred             CCCeEEEEcCcchH---HHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccc
Q 026513           70 GGELFLDYGTGSGI---LGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFT  134 (237)
Q Consensus        70 ~~~~vLDlG~G~G~---~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~  134 (237)
                      .++++|-.|+++|.   ++..+++.|. +|+.++.+++.++...+.+....-.   .++.++.+|+.+
T Consensus         8 ~~k~~lItGa~~gIG~~~a~~l~~~G~-~v~~~~r~~~~~~~~~~~l~~~~~~---~~~~~~~~Dl~~   71 (257)
T PRK09242          8 DGQTALITGASKGIGLAIAREFLGLGA-DVLIVARDADALAQARDELAEEFPE---REVHGLAADVSD   71 (257)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhhCCC---CeEEEEECCCCC
Confidence            46789999886552   3333445554 6999998887776665555433111   147777888764

>PRK06194 hypothetical protein; Provisional

Probab=84.30  E-value=14  Score=30.88  Aligned_cols=58  Identities=19%  Similarity=0.201  Sum_probs=35.3

Q ss_pred             CCeEEEEcCcchH---HHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccc
Q 026513           71 GELFLDYGTGSGI---LGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFT  134 (237)
Q Consensus        71 ~~~vLDlG~G~G~---~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~  134 (237)
                      ++++|-.|.++|.   ++..+++.|. +|+.+|.++..++...+.+...+.     ++.++.+|+.+
T Consensus         6 ~k~vlVtGasggIG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~-----~~~~~~~D~~d   66 (287)
T PRK06194          6 GKVAVITGAASGFGLAFARIGAALGM-KLVLADVQQDALDRAVAELRAQGA-----EVLGVRTDVSD   66 (287)
T ss_pred             CCEEEEeCCccHHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHHHHhcCC-----eEEEEECCCCC
Confidence            5678877765442   2333444554 689999988776655444443322     36777888764

>cd08232 idonate-5-DH L-idonate 5-dehydrogenase

Probab=84.28  E-value=4  Score=35.14  Aligned_cols=95  Identities=23%  Similarity=0.272  Sum_probs=56.5

Q ss_pred             CCCeEEEEcCcc-hHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccc
Q 026513           70 GGELFLDYGTGS-GILGIAAIKF-GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVED  147 (237)
Q Consensus        70 ~~~~vLDlG~G~-G~~~~~la~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  147 (237)
                      ++.+||..|+|. |..+..+++. |..++++++.++...+.+++.    +..    .+  +..+-..             
T Consensus       165 ~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~~~~~----g~~----~v--i~~~~~~-------------  221 (339)
T cd08232         165 AGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAVARAM----GAD----ET--VNLARDP-------------  221 (339)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHc----CCC----EE--EcCCchh-------------
Confidence            688899988765 5666666654 655799999998877755432    321    11  1111000             


Q ss_pred             cccccccCCC-CCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEec
Q 026513          148 LSSHKIRGIS-QTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISG  195 (237)
Q Consensus       148 ~~~~~~~~~~-~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~  195 (237)
                           ..... ....+|+++......   ..+..+.+.|+++|.++..+
T Consensus       222 -----~~~~~~~~~~vd~vld~~g~~---~~~~~~~~~L~~~G~~v~~g  262 (339)
T cd08232         222 -----LAAYAADKGDFDVVFEASGAP---AALASALRVVRPGGTVVQVG  262 (339)
T ss_pred             -----hhhhhccCCCccEEEECCCCH---HHHHHHHHHHhcCCEEEEEe
Confidence                 00111 124599999754321   23466778889999998644

L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai

>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function

Probab=84.11  E-value=3.2  Score=30.92  Aligned_cols=68  Identities=12%  Similarity=0.059  Sum_probs=41.7

Q ss_pred             CCceeEEEEeCCh------HHHHHHHHHHhHhcCCCeEEEEeccCCCCHHHHHHHHhh-ccccceeee-cCCEEEEEEEE
Q 026513          159 TEKYDVVIANILL------NPLLQLADHIVSYAKPGAVVGISGILSEQLPHIINRYSE-FLEDILVSE-MDDWTCVSGKK  230 (237)
Q Consensus       159 ~~~fD~I~~n~~~------~~~~~~l~~~~~~L~~gG~liis~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~w~~~~~~~  230 (237)
                      ...+|+|+.++..      -+..++++.+.+++++||.+..-+    ....+...+.. +|...+... .+....+.+.+
T Consensus        48 ~~~~Da~ylDgFsP~~nPelWs~e~~~~l~~~~~~~~~l~Tys----~a~~Vr~~L~~aGF~v~~~~g~g~Kr~~~~a~~  123 (124)
T PF05430_consen   48 DARFDAWYLDGFSPAKNPELWSEELFKKLARLSKPGGTLATYS----SAGAVRRALQQAGFEVEKVPGFGRKREMLRAVK  123 (124)
T ss_dssp             -T-EEEEEE-SS-TTTSGGGSSHHHHHHHHHHEEEEEEEEES------BHHHHHHHHHCTEEEEEEE-STTSSEEEEEEC
T ss_pred             cccCCEEEecCCCCcCCcccCCHHHHHHHHHHhCCCcEEEEee----chHHHHHHHHHcCCEEEEcCCCCCcchheEEEc
Confidence            3789999998732      223578999999999999887732    22445555544 476665554 34566666654

; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.

>PRK06139 short chain dehydrogenase; Provisional

Probab=84.09  E-value=3.8  Score=35.76  Aligned_cols=59  Identities=24%  Similarity=0.256  Sum_probs=39.0

Q ss_pred             CCCeEEEEcCcchH---HHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccc
Q 026513           70 GGELFLDYGTGSGI---LGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFT  134 (237)
Q Consensus        70 ~~~~vLDlG~G~G~---~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~  134 (237)
                      .++++|-.|+++|.   ++..+++.|. +|+.++-++..++...+.+...+.     ++.++..|+.+
T Consensus         6 ~~k~vlITGAs~GIG~aia~~la~~G~-~Vvl~~R~~~~l~~~~~~~~~~g~-----~~~~~~~Dv~d   67 (330)
T PRK06139          6 HGAVVVITGASSGIGQATAEAFARRGA-RLVLAARDEEALQAVAEECRALGA-----EVLVVPTDVTD   67 (330)
T ss_pred             CCCEEEEcCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCC-----cEEEEEeeCCC
Confidence            36788888886652   3334455554 588999999888777666665443     26666777764

>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function

Probab=84.03  E-value=2.6  Score=36.54  Aligned_cols=110  Identities=13%  Similarity=0.179  Sum_probs=64.2

Q ss_pred             CeEEEEcCcchHHHHHHHH-h------C-----C---------CeEEEEeCCHH--HHHHHHHHHHHc------------
Q 026513           72 ELFLDYGTGSGILGIAAIK-F------G-----A---------AMSVGADIDPQ--AIKSAHQNAALN------------  116 (237)
Q Consensus        72 ~~vLDlG~G~G~~~~~la~-~------~-----~---------~~v~~vD~s~~--~i~~a~~~~~~~------------  116 (237)
                      .+||-||.|.|.-.++++. .      .     .         -.++++|+.+-  .++.....+...            
T Consensus        88 ~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~itlvDiAdWs~VV~~L~~~i~s~p~~sk~a~~~~~  167 (315)
T PF11312_consen   88 LRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLSITLVDIADWSSVVDRLTTTITSPPPLSKYASAANW  167 (315)
T ss_pred             ceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcceEEEEEecChHHHHHHHHHhccCCCCcccccccccc
Confidence            6999999999854433331 1      0     0         26999999654  344444443333            


Q ss_pred             -CCCCCcceEEeccCccccccccccccccccccccccccCCCCCCceeEEEEeCC--------hHHHHHHHHHHhHhcCC
Q 026513          117 -NIGPKKMKLHLVPDRTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANIL--------LNPLLQLADHIVSYAKP  187 (237)
Q Consensus       117 -~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~--------~~~~~~~l~~~~~~L~~  187 (237)
                       ......+.+.|.+.|+.+...++             +..+......|+|..-..        +....+++.++...++|
T Consensus       168 ~~~~~~~~~~~F~~~DvL~~~~~~-------------l~~ll~~~~~~LITLlFTlNELfs~s~~kTt~FLl~Lt~~~~~  234 (315)
T PF11312_consen  168 PLIEPDRFNVSFTQQDVLSLSEDD-------------LKSLLGPPSPDLITLLFTLNELFSTSISKTTKFLLRLTDICPP  234 (315)
T ss_pred             ccCCccceeeeEEecccccCChHH-------------HHHHhccchhHHHHHHHHHHHHHhcChHHHHHHHHHHHhhcCC
Confidence             23456667888899887533221             001111123455543221        12234789999999999


Q ss_pred             CeEEEEe
Q 026513          188 GAVVGIS  194 (237)
Q Consensus       188 gG~liis  194 (237)
                      |..|+|.
T Consensus       235 GslLLVv  241 (315)
T PF11312_consen  235 GSLLLVV  241 (315)
T ss_pred             CcEEEEE
Confidence            9999994

>PLN02586 probable cinnamyl alcohol dehydrogenase

Probab=83.97  E-value=3.1  Score=36.59  Aligned_cols=98  Identities=13%  Similarity=0.095  Sum_probs=53.8

Q ss_pred             ccCCCeEEEEcCcc-hHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccc
Q 026513           68 IKGGELFLDYGTGS-GILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVE  146 (237)
Q Consensus        68 ~~~~~~vLDlG~G~-G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  146 (237)
                      ..+|.+||-.|+|. |.+++.+++.-..++++++.++.....+   ++..|...    + +...+..             
T Consensus       181 ~~~g~~VlV~G~G~vG~~avq~Ak~~Ga~vi~~~~~~~~~~~~---~~~~Ga~~----v-i~~~~~~-------------  239 (360)
T PLN02586        181 TEPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISSSSNKEDEA---INRLGADS----F-LVSTDPE-------------  239 (360)
T ss_pred             cCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCcchhhhH---HHhCCCcE----E-EcCCCHH-------------
Confidence            35788999998874 6666667765334588888776543222   12233321    1 1001100             


Q ss_pred             ccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEecc
Q 026513          147 DLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGI  196 (237)
Q Consensus       147 ~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~~  196 (237)
                           .+...  .+.+|+|+-....   ...+....+.|+++|.++..+.
T Consensus       240 -----~~~~~--~~~~D~vid~~g~---~~~~~~~~~~l~~~G~iv~vG~  279 (360)
T PLN02586        240 -----KMKAA--IGTMDYIIDTVSA---VHALGPLLGLLKVNGKLITLGL  279 (360)
T ss_pred             -----HHHhh--cCCCCEEEECCCC---HHHHHHHHHHhcCCcEEEEeCC
Confidence                 00111  1258999854321   1245667788999999987654

>PRK12937 short chain dehydrogenase; Provisional

Probab=83.95  E-value=14  Score=29.92  Aligned_cols=59  Identities=10%  Similarity=-0.014  Sum_probs=30.0

Q ss_pred             CCCeEEEEcCcch---HHHHHHHHhCCCeEEEEeC-CHHHHHHHHHHHHHcCCCCCcceEEeccCcccc
Q 026513           70 GGELFLDYGTGSG---ILGIAAIKFGAAMSVGADI-DPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFT  134 (237)
Q Consensus        70 ~~~~vLDlG~G~G---~~~~~la~~~~~~v~~vD~-s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~  134 (237)
                      +++++|-.|++.|   .++..+++.|.. ++.+.. ++...+...+.+...+.     ++.++..|+.+
T Consensus         4 ~~~~vlItG~~~~iG~~la~~l~~~g~~-v~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~Dl~~   66 (245)
T PRK12937          4 SNKVAIVTGASRGIGAAIARRLAADGFA-VAVNYAGSAAAADELVAEIEAAGG-----RAIAVQADVAD   66 (245)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCE-EEEecCCCHHHHHHHHHHHHhcCC-----eEEEEECCCCC
Confidence            3567888887544   223334455554 555443 33333333333333221     36777788764

>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH)

Probab=83.93  E-value=11  Score=32.89  Aligned_cols=104  Identities=19%  Similarity=0.200  Sum_probs=56.2

Q ss_pred             cCCCeEEEEcCcc-hHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccc
Q 026513           69 KGGELFLDYGTGS-GILGIAAIKF-GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVE  146 (237)
Q Consensus        69 ~~~~~vLDlG~G~-G~~~~~la~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  146 (237)
                      .+|.+||-.|+|. |..+..+++. |..+|++++.++...+.+++    .+...    +.........        ++.+
T Consensus       176 ~~g~~vlI~g~g~vG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~----~g~~~----vi~~~~~~~~--------~~~~  239 (361)
T cd08231         176 GAGDTVVVQGAGPLGLYAVAAAKLAGARRVIVIDGSPERLELARE----FGADA----TIDIDELPDP--------QRRA  239 (361)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----cCCCe----EEcCcccccH--------HHHH
Confidence            4788888888653 4444555554 55489999988877665542    24321    1111110000        0000


Q ss_pred             ccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEecc
Q 026513          147 DLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGI  196 (237)
Q Consensus       147 ~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~~  196 (237)
                           .+........+|+++.....   ...+....+.++++|+++..+.
T Consensus       240 -----~i~~~~~~~~~d~vid~~g~---~~~~~~~~~~l~~~G~~v~~g~  281 (361)
T cd08231         240 -----IVRDITGGRGADVVIEASGH---PAAVPEGLELLRRGGTYVLVGS  281 (361)
T ss_pred             -----HHHHHhCCCCCcEEEECCCC---hHHHHHHHHHhccCCEEEEEcC
Confidence                 01112223569999865422   1234566788899999987543

This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino

>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases

Probab=83.91  E-value=1.4  Score=35.54  Aligned_cols=24  Identities=17%  Similarity=-0.015  Sum_probs=19.2

Q ss_pred             HHHHHHHHHhHhcCCCeEEEEecc
Q 026513          173 PLLQLADHIVSYAKPGAVVGISGI  196 (237)
Q Consensus       173 ~~~~~l~~~~~~L~~gG~liis~~  196 (237)
                      .+..++..+.++|+|||.+++.+-
T Consensus        34 ~~~~~~~~~~rvLk~~g~~~i~~~   57 (231)
T PF01555_consen   34 WMEEWLKECYRVLKPGGSIFIFID   57 (231)
T ss_dssp             HHHHHHHHHHHHEEEEEEEEEEE-
T ss_pred             HHHHHHHHHHhhcCCCeeEEEEec
Confidence            345678999999999999998633

In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....

>PRK12491 pyrroline-5-carboxylate reductase; Reviewed

Probab=83.90  E-value=12  Score=31.72  Aligned_cols=102  Identities=14%  Similarity=0.153  Sum_probs=61.9

Q ss_pred             eEEEEcCcc--hHHHHHHHHhC---CCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccc
Q 026513           73 LFLDYGTGS--GILGIAAIKFG---AAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVED  147 (237)
Q Consensus        73 ~vLDlG~G~--G~~~~~la~~~---~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  147 (237)
                      +|.=||||.  +.++..+.+.+   ..++++.|.++..++.+.+.   .++       .. ..+..              
T Consensus         4 ~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~~r~~~~~~~l~~~---~g~-------~~-~~~~~--------------   58 (272)
T PRK12491          4 QIGFIGCGNMGIAMIGGMINKNIVSPDQIICSDLNVSNLKNASDK---YGI-------TI-TTNNN--------------   58 (272)
T ss_pred             eEEEECccHHHHHHHHHHHHCCCCCCceEEEECCCHHHHHHHHHh---cCc-------EE-eCCcH--------------
Confidence            577788886  24444455544   24699999998776554332   232       11 11111              


Q ss_pred             cccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEeccCCCCHHHHHHHHh
Q 026513          148 LSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILSEQLPHIINRYS  209 (237)
Q Consensus       148 ~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~~~~~~~~~~~~~~~  209 (237)
                             ..  -...|+||...+-..+.++++.+...++++ .+++|-...-+...+.+.+.
T Consensus        59 -------e~--~~~aDiIiLavkP~~~~~vl~~l~~~~~~~-~lvISi~AGi~i~~l~~~l~  110 (272)
T PRK12491         59 -------EV--ANSADILILSIKPDLYSSVINQIKDQIKND-VIVVTIAAGKSIKSTENEFD  110 (272)
T ss_pred             -------HH--HhhCCEEEEEeChHHHHHHHHHHHHhhcCC-cEEEEeCCCCcHHHHHHhcC
Confidence                   01  135699987665577778888888777654 67777666666667766664

>PRK06128 oxidoreductase; Provisional

Probab=83.12  E-value=14  Score=31.40  Aligned_cols=108  Identities=19%  Similarity=0.132  Sum_probs=54.3

Q ss_pred             CCCeEEEEcCcchH---HHHHHHHhCCCeEEEEeCCHH--HHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccc
Q 026513           70 GGELFLDYGTGSGI---LGIAAIKFGAAMSVGADIDPQ--AIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGV  144 (237)
Q Consensus        70 ~~~~vLDlG~G~G~---~~~~la~~~~~~v~~vD~s~~--~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~  144 (237)
                      .++++|-.|++.|.   ++..+++.|. +|+.+..+..  ..+...+.+...+.     ++.++.+|+.+..   .+.++
T Consensus        54 ~~k~vlITGas~gIG~~~a~~l~~~G~-~V~i~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~Dl~~~~---~v~~~  124 (300)
T PRK06128         54 QGRKALITGADSGIGRATAIAFAREGA-DIALNYLPEEEQDAAEVVQLIQAEGR-----KAVALPGDLKDEA---FCRQL  124 (300)
T ss_pred             CCCEEEEecCCCcHHHHHHHHHHHcCC-EEEEEeCCcchHHHHHHHHHHHHcCC-----eEEEEecCCCCHH---HHHHH
Confidence            36789999965542   3334445554 4666655432  22223333333221     3667778876422   11111


Q ss_pred             ccccccccccCCCCCCceeEEEEeCCh------------HHH-----------HHHHHHHhHhcCCCeEEEE
Q 026513          145 VEDLSSHKIRGISQTEKYDVVIANILL------------NPL-----------LQLADHIVSYAKPGAVVGI  193 (237)
Q Consensus       145 ~~~~~~~~~~~~~~~~~fD~I~~n~~~------------~~~-----------~~~l~~~~~~L~~gG~lii  193 (237)
                      ++..       ...-++.|++|.|...            ...           -.+++.+...++.+|.++.
T Consensus       125 ~~~~-------~~~~g~iD~lV~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~iv~  189 (300)
T PRK06128        125 VERA-------VKELGGLDILVNIAGKQTAVKDIADITTEQFDATFKTNVYAMFWLCKAAIPHLPPGASIIN  189 (300)
T ss_pred             HHHH-------HHHhCCCCEEEECCcccCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhcCcCCEEEE
Confidence            1110       0012468999986631            001           1235666667777887776

>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD)

Probab=82.93  E-value=19  Score=30.69  Aligned_cols=91  Identities=18%  Similarity=0.168  Sum_probs=54.2

Q ss_pred             ccCCCeEEEEcCcc-hHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccc
Q 026513           68 IKGGELFLDYGTGS-GILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVE  146 (237)
Q Consensus        68 ~~~~~~vLDlG~G~-G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  146 (237)
                      +.++.++|-.|+|. |..++.+++....++++++.++...+.+++    .+...    +.  ..+               
T Consensus       165 ~~~~~~vlV~g~g~vg~~~~~la~~~g~~v~~~~~~~~~~~~~~~----~g~~~----~~--~~~---------------  219 (329)
T cd08298         165 LKPGQRLGLYGFGASAHLALQIARYQGAEVFAFTRSGEHQELARE----LGADW----AG--DSD---------------  219 (329)
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEcCChHHHHHHHH----hCCcE----Ee--ccC---------------
Confidence            45677888887663 344444555434678999888876665532    23321    11  111               


Q ss_pred             ccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEec
Q 026513          147 DLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISG  195 (237)
Q Consensus       147 ~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~  195 (237)
                              .. ....+|+++.....   ...+..+.+.|+++|.+++.+
T Consensus       220 --------~~-~~~~vD~vi~~~~~---~~~~~~~~~~l~~~G~~v~~g  256 (329)
T cd08298         220 --------DL-PPEPLDAAIIFAPV---GALVPAALRAVKKGGRVVLAG  256 (329)
T ss_pred             --------cc-CCCcccEEEEcCCc---HHHHHHHHHHhhcCCEEEEEc
Confidence                    00 13468988764322   135677888999999998754

These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha

>PRK05867 short chain dehydrogenase; Provisional

Probab=82.92  E-value=4.7  Score=33.18  Aligned_cols=59  Identities=20%  Similarity=0.142  Sum_probs=38.6

Q ss_pred             CCCeEEEEcCcchH---HHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccc
Q 026513           70 GGELFLDYGTGSGI---LGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFT  134 (237)
Q Consensus        70 ~~~~vLDlG~G~G~---~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~  134 (237)
                      .++++|-.|+++|.   ++..+++.|. +|+.++.++..++...+.+...+.     ++.++..|+.+
T Consensus         8 ~~k~vlVtGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~-----~~~~~~~D~~~   69 (253)
T PRK05867          8 HGKRALITGASTGIGKRVALAYVEAGA-QVAIAARHLDALEKLADEIGTSGG-----KVVPVCCDVSQ   69 (253)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHhcCC-----eEEEEEccCCC
Confidence            46789999987652   3334455554 588999998877766655554331     36667777764

>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase

Probab=82.72  E-value=8.6  Score=33.27  Aligned_cols=37  Identities=24%  Similarity=0.193  Sum_probs=26.5

Q ss_pred             CCCeEEEEcCcc-hHHHHHH-HHhCCCeEEEEeCCHHHH
Q 026513           70 GGELFLDYGTGS-GILGIAA-IKFGAAMSVGADIDPQAI  106 (237)
Q Consensus        70 ~~~~vLDlG~G~-G~~~~~l-a~~~~~~v~~vD~s~~~i  106 (237)
                      ++.+|+-+|+|. |...... ...+..+|+.++.++...
T Consensus       177 ~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra  215 (311)
T cd05213         177 KGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERA  215 (311)
T ss_pred             cCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHH
Confidence            588999999975 4443333 334677899999998654

Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,

>PRK08507 prephenate dehydrogenase; Validated

Probab=82.66  E-value=11  Score=31.94  Aligned_cols=84  Identities=19%  Similarity=0.204  Sum_probs=52.5

Q ss_pred             eEEEEcCcc--hHHHHHHHHhCC-CeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccccc
Q 026513           73 LFLDYGTGS--GILGIAAIKFGA-AMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDLS  149 (237)
Q Consensus        73 ~vLDlG~G~--G~~~~~la~~~~-~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~  149 (237)
                      +|.=+|+|.  |.++..+.+.|. .+|++.|.++..++.+++    .+...    .   ..+..                
T Consensus         2 ~I~iIG~G~mG~sla~~l~~~g~~~~v~~~d~~~~~~~~~~~----~g~~~----~---~~~~~----------------   54 (275)
T PRK08507          2 KIGIIGLGLMGGSLGLALKEKGLISKVYGYDHNELHLKKALE----LGLVD----E---IVSFE----------------   54 (275)
T ss_pred             EEEEEccCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHH----CCCCc----c---cCCHH----------------
Confidence            466678775  345555555554 369999999987766542    23211    0   01110                


Q ss_pred             cccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEE
Q 026513          150 SHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVG  192 (237)
Q Consensus       150 ~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~li  192 (237)
                           ..  . ..|+|+...|.....+++..+.. ++++..++
T Consensus        55 -----~~--~-~aD~Vilavp~~~~~~~~~~l~~-l~~~~iv~   88 (275)
T PRK08507         55 -----EL--K-KCDVIFLAIPVDAIIEILPKLLD-IKENTTII   88 (275)
T ss_pred             -----HH--h-cCCEEEEeCcHHHHHHHHHHHhc-cCCCCEEE
Confidence                 11  1 38999998888777888888887 88776444

>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like

Probab=82.60  E-value=11  Score=32.58  Aligned_cols=101  Identities=15%  Similarity=0.265  Sum_probs=56.2

Q ss_pred             ccCCCeEEEEcCcc-hHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccc
Q 026513           68 IKGGELFLDYGTGS-GILGIAAIKF-GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVV  145 (237)
Q Consensus        68 ~~~~~~vLDlG~G~-G~~~~~la~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  145 (237)
                      +.++.+||-.|+|. |..++.+++. |..++++++.++...+.+++    .+...   -+.....+...           
T Consensus       164 ~~~g~~vlI~g~g~~g~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~----~g~~~---~v~~~~~~~~~-----------  225 (345)
T cd08286         164 VKPGDTVAIVGAGPVGLAALLTAQLYSPSKIIMVDLDDNRLEVAKK----LGATH---TVNSAKGDAIE-----------  225 (345)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----hCCCc---eeccccccHHH-----------
Confidence            45678888777643 3444455554 54678899998877666553    23321   01111111100           


Q ss_pred             cccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEec
Q 026513          146 EDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISG  195 (237)
Q Consensus       146 ~~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~  195 (237)
                            .+........+|+++.....   ...+..+.+.|+++|.++.-+
T Consensus       226 ------~i~~~~~~~~~d~vld~~g~---~~~~~~~~~~l~~~g~~v~~g  266 (345)
T cd08286         226 ------QVLELTDGRGVDVVIEAVGI---PATFELCQELVAPGGHIANVG  266 (345)
T ss_pred             ------HHHHHhCCCCCCEEEECCCC---HHHHHHHHHhccCCcEEEEec
Confidence                  01112223569999865421   224566778899999998643

This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (

>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional

Probab=82.53  E-value=14  Score=32.40  Aligned_cols=33  Identities=27%  Similarity=0.229  Sum_probs=26.5

Q ss_pred             CCeEEEEcCcc-hH-HHHHHHHhCCCeEEEEeCCH
Q 026513           71 GELFLDYGTGS-GI-LGIAAIKFGAAMSVGADIDP  103 (237)
Q Consensus        71 ~~~vLDlG~G~-G~-~~~~la~~~~~~v~~vD~s~  103 (237)
                      +.+|+-+|||. |. .+..|++.|..+++.+|.+.
T Consensus        24 ~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~   58 (338)
T PRK12475         24 EKHVLIVGAGALGAANAEALVRAGIGKLTIADRDY   58 (338)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence            56899999995 54 45567788999999999975

>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]

Probab=82.42  E-value=24  Score=29.93  Aligned_cols=86  Identities=17%  Similarity=0.240  Sum_probs=55.8

Q ss_pred             CCCeEEEEcCcchH---HHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccc
Q 026513           70 GGELFLDYGTGSGI---LGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVE  146 (237)
Q Consensus        70 ~~~~vLDlG~G~G~---~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  146 (237)
                      .+.++|--|+.+|.   ++..+++.|. .++.+-=+.+.++..++.+.... .   +++.++..|+.++.-.+.+.+.+.
T Consensus         5 ~~~~~lITGASsGIG~~~A~~lA~~g~-~liLvaR~~~kL~~la~~l~~~~-~---v~v~vi~~DLs~~~~~~~l~~~l~   79 (265)
T COG0300           5 KGKTALITGASSGIGAELAKQLARRGY-NLILVARREDKLEALAKELEDKT-G---VEVEVIPADLSDPEALERLEDELK   79 (265)
T ss_pred             CCcEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCcHHHHHHHHHHHHHhh-C---ceEEEEECcCCChhHHHHHHHHHH
Confidence            46789999988883   4555666654 48899999998888777766543 1   148889999876432221111111


Q ss_pred             ccccccccCCCCCCceeEEEEeCC
Q 026513          147 DLSSHKIRGISQTEKYDVVIANIL  170 (237)
Q Consensus       147 ~~~~~~~~~~~~~~~fD~I~~n~~  170 (237)
                      .          .....|+.|.|..
T Consensus        80 ~----------~~~~IdvLVNNAG   93 (265)
T COG0300          80 E----------RGGPIDVLVNNAG   93 (265)
T ss_pred             h----------cCCcccEEEECCC
Confidence            1          1247999998875

>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1

Probab=82.40  E-value=12  Score=32.14  Aligned_cols=99  Identities=7%  Similarity=0.002  Sum_probs=52.3

Q ss_pred             CCCeEEEE--cCc-chHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccc
Q 026513           70 GGELFLDY--GTG-SGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVE  146 (237)
Q Consensus        70 ~~~~vLDl--G~G-~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  146 (237)
                      ++..++-+  |+| .|..++.+++.-..++++++.++...+.+++    .+...   -+.....++.+            
T Consensus       142 ~~~~vlv~~~g~g~vG~~a~q~a~~~G~~vi~~~~~~~~~~~~~~----~g~~~---~i~~~~~~~~~------------  202 (324)
T cd08291         142 EGAKAVVHTAAASALGRMLVRLCKADGIKVINIVRRKEQVDLLKK----IGAEY---VLNSSDPDFLE------------  202 (324)
T ss_pred             CCCcEEEEccCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH----cCCcE---EEECCCccHHH------------
Confidence            34445544  443 3556666666534469999999987777764    24321   01111111110            


Q ss_pred             ccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEecc
Q 026513          147 DLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGI  196 (237)
Q Consensus       147 ~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~~  196 (237)
                           .+........+|+++....-..    .......++++|.++.-+.
T Consensus       203 -----~v~~~~~~~~~d~vid~~g~~~----~~~~~~~l~~~G~~v~~g~  243 (324)
T cd08291         203 -----DLKELIAKLNATIFFDAVGGGL----TGQILLAMPYGSTLYVYGY  243 (324)
T ss_pred             -----HHHHHhCCCCCcEEEECCCcHH----HHHHHHhhCCCCEEEEEEe
Confidence                 0111222346899986443222    2345667899999887543

2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin

>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised

Probab=82.26  E-value=4.5  Score=36.20  Aligned_cols=44  Identities=9%  Similarity=-0.064  Sum_probs=33.6

Q ss_pred             ccCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHH
Q 026513           68 IKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQN  112 (237)
Q Consensus        68 ~~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~  112 (237)
                      +.++.+||-|.+|.....-++... .++|++||+||......+-.
T Consensus        33 i~~~d~vl~ItSaG~N~L~yL~~~-P~~I~aVDlNp~Q~aLleLK   76 (380)
T PF11899_consen   33 IGPDDRVLTITSAGCNALDYLLAG-PKRIHAVDLNPAQNALLELK   76 (380)
T ss_pred             CCCCCeEEEEccCCchHHHHHhcC-CceEEEEeCCHHHHHHHHHH
Confidence            578889999988776665555444 67799999999988765543

This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.

>PRK07523 gluconate 5-dehydrogenase; Provisional

Probab=82.17  E-value=22  Score=29.07  Aligned_cols=58  Identities=21%  Similarity=0.185  Sum_probs=37.5

Q ss_pred             CCCeEEEEcCcchHHHHHHH----HhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccc
Q 026513           70 GGELFLDYGTGSGILGIAAI----KFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFT  134 (237)
Q Consensus        70 ~~~~vLDlG~G~G~~~~~la----~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~  134 (237)
                      .++++|-.|+ +|.++..++    ..|. +|++++-++..++...+.+...+.     ++.++..|+.+
T Consensus         9 ~~k~vlItGa-~g~iG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~i~~~~~-----~~~~~~~D~~~   70 (255)
T PRK07523          9 TGRRALVTGS-SQGIGYALAEGLAQAGA-EVILNGRDPAKLAAAAESLKGQGL-----SAHALAFDVTD   70 (255)
T ss_pred             CCCEEEEECC-cchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcCc-----eEEEEEccCCC
Confidence            4678998885 454454444    4454 699999998877666555554332     36667777764

>PRK05854 short chain dehydrogenase; Provisional

Probab=82.14  E-value=6.3  Score=33.92  Aligned_cols=87  Identities=17%  Similarity=0.095  Sum_probs=48.8

Q ss_pred             CCCeEEEEcCcchH---HHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccc
Q 026513           70 GGELFLDYGTGSGI---LGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVE  146 (237)
Q Consensus        70 ~~~~vLDlG~G~G~---~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  146 (237)
                      .+++++-.|+++|.   ++..+++.| .+|+.+.-+....+.+.+.+......   .++.++..|+.+..   .+.++++
T Consensus        13 ~gk~~lITGas~GIG~~~a~~La~~G-~~Vil~~R~~~~~~~~~~~l~~~~~~---~~v~~~~~Dl~d~~---sv~~~~~   85 (313)
T PRK05854         13 SGKRAVVTGASDGLGLGLARRLAAAG-AEVILPVRNRAKGEAAVAAIRTAVPD---AKLSLRALDLSSLA---SVAALGE   85 (313)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHHhCCC---CceEEEEecCCCHH---HHHHHHH
Confidence            36788888887663   333445555 46888888877766655555432211   13677788876422   1222222


Q ss_pred             ccccccccCCCCCCceeEEEEeCC
Q 026513          147 DLSSHKIRGISQTEKYDVVIANIL  170 (237)
Q Consensus       147 ~~~~~~~~~~~~~~~fD~I~~n~~  170 (237)
                      ...       ...++.|++|.|..
T Consensus        86 ~~~-------~~~~~iD~li~nAG  102 (313)
T PRK05854         86 QLR-------AEGRPIHLLINNAG  102 (313)
T ss_pred             HHH-------HhCCCccEEEECCc
Confidence            210       01246898887653

>TIGR00692 tdh L-threonine 3-dehydrogenase

Probab=82.11  E-value=10  Score=32.66  Aligned_cols=102  Identities=19%  Similarity=0.237  Sum_probs=56.1

Q ss_pred             ccCCCeEEEEcCc-chHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccc
Q 026513           68 IKGGELFLDYGTG-SGILGIAAIKF-GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVV  145 (237)
Q Consensus        68 ~~~~~~vLDlG~G-~G~~~~~la~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  145 (237)
                      ..+|.+|+-.|+| .|..++.+++. |...|++++.++...+.+++.    +...   -+.....++.+           
T Consensus       159 ~~~g~~vlI~~~g~vg~~a~~la~~~G~~~v~~~~~~~~~~~~~~~~----g~~~---~v~~~~~~~~~-----------  220 (340)
T TIGR00692       159 PISGKSVLVTGAGPIGLMAIAVAKASGAYPVIVSDPNEYRLELAKKM----GATY---VVNPFKEDVVK-----------  220 (340)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHh----CCcE---EEcccccCHHH-----------
Confidence            3567788877765 24555556654 544588888888766655432    3221   01111111110           


Q ss_pred             cccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEecc
Q 026513          146 EDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGI  196 (237)
Q Consensus       146 ~~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~~  196 (237)
                            .+........+|+++.....   ...+..+.+.|+++|.++..+.
T Consensus       221 ------~l~~~~~~~~~d~vld~~g~---~~~~~~~~~~l~~~g~~v~~g~  262 (340)
T TIGR00692       221 ------EVADLTDGEGVDVFLEMSGA---PKALEQGLQAVTPGGRVSLLGL  262 (340)
T ss_pred             ------HHHHhcCCCCCCEEEECCCC---HHHHHHHHHhhcCCCEEEEEcc
Confidence                  00112223569999875322   2345667788899999887554

E. coli His-90 modulates substrate specificity and is believed part of the active site.

>PRK05872 short chain dehydrogenase; Provisional

Probab=82.07  E-value=14  Score=31.40  Aligned_cols=84  Identities=18%  Similarity=0.210  Sum_probs=45.6

Q ss_pred             CCCeEEEEcCcchH---HHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccc
Q 026513           70 GGELFLDYGTGSGI---LGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVE  146 (237)
Q Consensus        70 ~~~~vLDlG~G~G~---~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  146 (237)
                      .++++|-.|+++|.   ++..+++.|. +|+.++.++..++...+.+.. +  .   ++..+..|+.+..   .+..+++
T Consensus         8 ~gk~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~l~~~~~~l~~-~--~---~~~~~~~Dv~d~~---~v~~~~~   77 (296)
T PRK05872          8 AGKVVVVTGAARGIGAELARRLHARGA-KLALVDLEEAELAALAAELGG-D--D---RVLTVVADVTDLA---AMQAAAE   77 (296)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhcC-C--C---cEEEEEecCCCHH---HHHHHHH
Confidence            46789988876652   3333445554 689999988776655443321 1  1   2455567765421   1111111


Q ss_pred             ccccccccCCCCCCceeEEEEeCC
Q 026513          147 DLSSHKIRGISQTEKYDVVIANIL  170 (237)
Q Consensus       147 ~~~~~~~~~~~~~~~fD~I~~n~~  170 (237)
                      ..       ...-++.|++|.|..
T Consensus        78 ~~-------~~~~g~id~vI~nAG   94 (296)
T PRK05872         78 EA-------VERFGGIDVVVANAG   94 (296)
T ss_pred             HH-------HHHcCCCCEEEECCC
Confidence            10       001257899998774

>PRK12939 short chain dehydrogenase; Provisional

Probab=82.07  E-value=18  Score=29.35  Aligned_cols=58  Identities=17%  Similarity=0.062  Sum_probs=35.5

Q ss_pred             CCCeEEEEcCcchHHHHHHH----HhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccc
Q 026513           70 GGELFLDYGTGSGILGIAAI----KFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFT  134 (237)
Q Consensus        70 ~~~~vLDlG~G~G~~~~~la----~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~  134 (237)
                      +++++|-.|+ +|.++..++    +.| .++++++-++..++...+.+...+.     ++.++.+|+.+
T Consensus         6 ~~~~vlItGa-~g~iG~~la~~l~~~G-~~v~~~~r~~~~~~~~~~~~~~~~~-----~~~~~~~Dl~~   67 (250)
T PRK12939          6 AGKRALVTGA-ARGLGAAFAEALAEAG-ATVAFNDGLAAEARELAAALEAAGG-----RAHAIAADLAD   67 (250)
T ss_pred             CCCEEEEeCC-CChHHHHHHHHHHHcC-CEEEEEeCCHHHHHHHHHHHHhcCC-----cEEEEEccCCC
Confidence            3677887776 444444443    444 4588888888766655554443221     36777888764

>PRK08085 gluconate 5-dehydrogenase; Provisional

Probab=82.02  E-value=22  Score=29.10  Aligned_cols=59  Identities=25%  Similarity=0.314  Sum_probs=36.2

Q ss_pred             CCCeEEEEcCcchH---HHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccc
Q 026513           70 GGELFLDYGTGSGI---LGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFT  134 (237)
Q Consensus        70 ~~~~vLDlG~G~G~---~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~  134 (237)
                      .++++|-.|+++|.   ++..+++.| .+|+.++.++..++.....+...+.     ++.++..|+.+
T Consensus         8 ~~k~~lItGas~giG~~ia~~L~~~G-~~vvl~~r~~~~~~~~~~~l~~~~~-----~~~~~~~Dl~~   69 (254)
T PRK08085          8 AGKNILITGSAQGIGFLLATGLAEYG-AEIIINDITAERAELAVAKLRQEGI-----KAHAAPFNVTH   69 (254)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHcC-CEEEEEcCCHHHHHHHHHHHHhcCC-----eEEEEecCCCC
Confidence            46788888866542   333444555 4688999988776655555443321     35566777764

>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated

Probab=81.99  E-value=14  Score=32.40  Aligned_cols=32  Identities=22%  Similarity=0.239  Sum_probs=25.9

Q ss_pred             CCeEEEEcCcc-hH-HHHHHHHhCCCeEEEEeCC
Q 026513           71 GELFLDYGTGS-GI-LGIAAIKFGAAMSVGADID  102 (237)
Q Consensus        71 ~~~vLDlG~G~-G~-~~~~la~~~~~~v~~vD~s  102 (237)
                      ..+|+-+|||. |. ++..|+..|..+++.+|.+
T Consensus        24 ~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D   57 (339)
T PRK07688         24 EKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRD   57 (339)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            56899999995 54 4556778899999999987

>PRK09072 short chain dehydrogenase; Provisional

Probab=81.76  E-value=18  Score=29.84  Aligned_cols=58  Identities=17%  Similarity=0.145  Sum_probs=36.5

Q ss_pred             CCCeEEEEcCcchH---HHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccc
Q 026513           70 GGELFLDYGTGSGI---LGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFT  134 (237)
Q Consensus        70 ~~~~vLDlG~G~G~---~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~  134 (237)
                      +++++|-.|+++|.   ++..+++.| .+|++++.++..++.....+. .+ .    ++.++..|+.+
T Consensus         4 ~~~~vlItG~s~~iG~~ia~~l~~~G-~~V~~~~r~~~~~~~~~~~~~-~~-~----~~~~~~~D~~d   64 (263)
T PRK09072          4 KDKRVLLTGASGGIGQALAEALAAAG-ARLLLVGRNAEKLEALAARLP-YP-G----RHRWVVADLTS   64 (263)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHh-cC-C----ceEEEEccCCC
Confidence            35678888876652   334455555 459999999877766554442 11 1    36677788764

>PRK07035 short chain dehydrogenase; Provisional

Probab=81.58  E-value=7.2  Score=31.94  Aligned_cols=58  Identities=14%  Similarity=0.103  Sum_probs=37.3

Q ss_pred             CCeEEEEcCcchH---HHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccc
Q 026513           71 GELFLDYGTGSGI---LGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFT  134 (237)
Q Consensus        71 ~~~vLDlG~G~G~---~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~  134 (237)
                      ++++|-.|+++|.   ++..+++.|. +|++++.++..++...+.+...+.     ++.++..|+.+
T Consensus         8 ~k~vlItGas~gIG~~l~~~l~~~G~-~Vi~~~r~~~~~~~~~~~~~~~~~-----~~~~~~~D~~~   68 (252)
T PRK07035          8 GKIALVTGASRGIGEAIAKLLAQQGA-HVIVSSRKLDGCQAVADAIVAAGG-----KAEALACHIGE   68 (252)
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCC-----eEEEEEcCCCC
Confidence            5688888887663   3334555654 799999988777665555543332     25566777653

>PRK08265 short chain dehydrogenase; Provisional

Probab=81.48  E-value=18  Score=29.85  Aligned_cols=56  Identities=14%  Similarity=0.152  Sum_probs=33.7

Q ss_pred             CCCeEEEEcCcch---HHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccc
Q 026513           70 GGELFLDYGTGSG---ILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFT  134 (237)
Q Consensus        70 ~~~~vLDlG~G~G---~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~  134 (237)
                      .++++|-.|+++|   .++..+++.|. +|+.++.++..++...+.+   +  .   ++.++.+|+.+
T Consensus         5 ~~k~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~---~--~---~~~~~~~Dl~~   63 (261)
T PRK08265          5 AGKVAIVTGGATLIGAAVARALVAAGA-RVAIVDIDADNGAAVAASL---G--E---RARFIATDITD   63 (261)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHh---C--C---eeEEEEecCCC
Confidence            3568888886554   23334445554 6999999876554433222   2  1   36677888764

>PRK07791 short chain dehydrogenase; Provisional

Probab=81.47  E-value=20  Score=30.29  Aligned_cols=59  Identities=22%  Similarity=0.193  Sum_probs=34.3

Q ss_pred             CCCeEEEEcCcchH---HHHHHHHhCCCeEEEEeCCH---------HHHHHHHHHHHHcCCCCCcceEEeccCcccc
Q 026513           70 GGELFLDYGTGSGI---LGIAAIKFGAAMSVGADIDP---------QAIKSAHQNAALNNIGPKKMKLHLVPDRTFT  134 (237)
Q Consensus        70 ~~~~vLDlG~G~G~---~~~~la~~~~~~v~~vD~s~---------~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~  134 (237)
                      .++++|-.|++.|.   ++..+++.|. +|+.++.+.         ..++.+.+.+...+.     ++.++..|+.+
T Consensus         5 ~~k~~lITGas~GIG~aia~~la~~G~-~vii~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----~~~~~~~Dv~~   75 (286)
T PRK07791          5 DGRVVIVTGAGGGIGRAHALAFAAEGA-RVVVNDIGVGLDGSASGGSAAQAVVDEIVAAGG-----EAVANGDDIAD   75 (286)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEeeCCccccccccchhHHHHHHHHHHhcCC-----ceEEEeCCCCC
Confidence            46789999987763   3334555554 577777654         444444444433332     25566777764

>PRK08862 short chain dehydrogenase; Provisional

Probab=81.45  E-value=6.5  Score=32.13  Aligned_cols=59  Identities=17%  Similarity=0.203  Sum_probs=38.8

Q ss_pred             CCCeEEEEcCcchH---HHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccc
Q 026513           70 GGELFLDYGTGSGI---LGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFT  134 (237)
Q Consensus        70 ~~~~vLDlG~G~G~---~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~  134 (237)
                      .++++|-.|++.|.   ++..+++.|. +|+.++-++..++...+.+...+..     +.....|..+
T Consensus         4 ~~k~~lVtGas~GIG~aia~~la~~G~-~V~~~~r~~~~l~~~~~~i~~~~~~-----~~~~~~D~~~   65 (227)
T PRK08862          4 KSSIILITSAGSVLGRTISCHFARLGA-TLILCDQDQSALKDTYEQCSALTDN-----VYSFQLKDFS   65 (227)
T ss_pred             CCeEEEEECCccHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHhcCCC-----eEEEEccCCC
Confidence            46789999999874   4445556654 5888999988887766655544322     4445566543

>cd05284 arabinose_DH_like D-arabinose dehydrogenase

Probab=81.42  E-value=19  Score=30.88  Aligned_cols=100  Identities=17%  Similarity=0.212  Sum_probs=56.0

Q ss_pred             ccCCCeEEEEcCcc-hHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccc
Q 026513           68 IKGGELFLDYGTGS-GILGIAAIKF-GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVV  145 (237)
Q Consensus        68 ~~~~~~vLDlG~G~-G~~~~~la~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  145 (237)
                      ..++.+||-.|+|. |..+..+++. |..++++++.++...+.+++    .+..    .+.....+..+           
T Consensus       165 ~~~~~~vlI~g~~~vg~~~~~~a~~~g~~~v~~~~~~~~~~~~~~~----~g~~----~~~~~~~~~~~-----------  225 (340)
T cd05284         165 LDPGSTVVVIGVGGLGHIAVQILRALTPATVIAVDRSEEALKLAER----LGAD----HVLNASDDVVE-----------  225 (340)
T ss_pred             CCCCCEEEEEcCcHHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHH----hCCc----EEEcCCccHHH-----------
Confidence            45688899998654 3334444544 54678999988877665532    3432    12111111100           


Q ss_pred             cccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEec
Q 026513          146 EDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISG  195 (237)
Q Consensus       146 ~~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~  195 (237)
                            .+........+|+++.....   ...+....+.|+++|.++.-+
T Consensus       226 ------~i~~~~~~~~~dvvld~~g~---~~~~~~~~~~l~~~g~~i~~g  266 (340)
T cd05284         226 ------EVRELTGGRGADAVIDFVGS---DETLALAAKLLAKGGRYVIVG  266 (340)
T ss_pred             ------HHHHHhCCCCCCEEEEcCCC---HHHHHHHHHHhhcCCEEEEEc
Confidence                  01122223469999975532   124566677889999988654

This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d

>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD)

Probab=81.40  E-value=12  Score=32.12  Aligned_cols=99  Identities=14%  Similarity=0.116  Sum_probs=55.7

Q ss_pred             ccCCCeEEEEcCcc-hHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccc
Q 026513           68 IKGGELFLDYGTGS-GILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVE  146 (237)
Q Consensus        68 ~~~~~~vLDlG~G~-G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  146 (237)
                      +.++.+||-.|+|. |..+..+++....++++++.+++..+.+++    .+...   -+.....+...            
T Consensus       161 ~~~~~~vlV~g~g~iG~~~~~~a~~~G~~vi~~~~~~~~~~~~~~----~g~~~---~i~~~~~~~~~------------  221 (333)
T cd08296         161 AKPGDLVAVQGIGGLGHLAVQYAAKMGFRTVAISRGSDKADLARK----LGAHH---YIDTSKEDVAE------------  221 (333)
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHH----cCCcE---EecCCCccHHH------------
Confidence            45688999999653 455555565433469999999877776643    23221   01111111110            


Q ss_pred             ccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEecc
Q 026513          147 DLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGI  196 (237)
Q Consensus       147 ~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~~  196 (237)
                           .+...   ..+|+++.....   ...+..+.+.|+++|.++..+.
T Consensus       222 -----~~~~~---~~~d~vi~~~g~---~~~~~~~~~~l~~~G~~v~~g~  260 (333)
T cd08296         222 -----ALQEL---GGAKLILATAPN---AKAISALVGGLAPRGKLLILGA  260 (333)
T ss_pred             -----HHHhc---CCCCEEEECCCc---hHHHHHHHHHcccCCEEEEEec
Confidence                 00011   258999864311   2345667778899999887543

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal

>PRK07478 short chain dehydrogenase; Provisional

Probab=81.39  E-value=7.5  Score=31.93  Aligned_cols=58  Identities=14%  Similarity=0.066  Sum_probs=37.5

Q ss_pred             CCeEEEEcCcchH---HHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccc
Q 026513           71 GELFLDYGTGSGI---LGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFT  134 (237)
Q Consensus        71 ~~~vLDlG~G~G~---~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~  134 (237)
                      ++++|-.|++.|.   ++..+++.|. +|+.++-++..++.+.+.+...+.     ++.++..|+.+
T Consensus         6 ~k~~lItGas~giG~~ia~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~-----~~~~~~~D~~~   66 (254)
T PRK07478          6 GKVAIITGASSGIGRAAAKLFAREGA-KVVVGARRQAELDQLVAEIRAEGG-----EAVALAGDVRD   66 (254)
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCC-----cEEEEEcCCCC
Confidence            5678888876552   3334445555 689999988877766665554432     26667778764

>PRK08229 2-dehydropantoate 2-reductase; Provisional

Probab=81.12  E-value=15  Score=31.97  Aligned_cols=49  Identities=18%  Similarity=0.123  Sum_probs=30.5

Q ss_pred             CceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEeccCCCCHHHHHHHH
Q 026513          160 EKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILSEQLPHIINRY  208 (237)
Q Consensus       160 ~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~~~~~~~~~~~~~~  208 (237)
                      ..+|+|+...+.....++++.+...++++..++....-......+.+.+
T Consensus        72 ~~~D~vil~vk~~~~~~~~~~l~~~~~~~~iii~~~nG~~~~~~l~~~~  120 (341)
T PRK08229         72 ATADLVLVTVKSAATADAAAALAGHARPGAVVVSFQNGVRNADVLRAAL  120 (341)
T ss_pred             cCCCEEEEEecCcchHHHHHHHHhhCCCCCEEEEeCCCCCcHHHHHHhC
Confidence            4789999876655566777888888888765544333222233444443

>PRK12743 oxidoreductase; Provisional

Probab=81.05  E-value=19  Score=29.66  Aligned_cols=57  Identities=12%  Similarity=0.104  Sum_probs=32.0

Q ss_pred             CCeEEEEcCcchHHHHHH----HHhCCCeEEEE-eCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccc
Q 026513           71 GELFLDYGTGSGILGIAA----IKFGAAMSVGA-DIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFT  134 (237)
Q Consensus        71 ~~~vLDlG~G~G~~~~~l----a~~~~~~v~~v-D~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~  134 (237)
                      ++++|-.|+++| ++..+    ++.|. +|+.+ ..+....+.+.+.+...+.     ++.++..|+.+
T Consensus         2 ~k~vlItGas~g-iG~~~a~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~Dl~~   63 (256)
T PRK12743          2 AQVAIVTASDSG-IGKACALLLAQQGF-DIGITWHSDEEGAKETAEEVRSHGV-----RAEIRQLDLSD   63 (256)
T ss_pred             CCEEEEECCCch-HHHHHHHHHHHCCC-EEEEEeCCChHHHHHHHHHHHhcCC-----ceEEEEccCCC
Confidence            357888887554 44444    34554 46555 4455555555444444432     36677788764

>PRK06172 short chain dehydrogenase; Provisional

Probab=80.97  E-value=6.8  Score=32.11  Aligned_cols=59  Identities=22%  Similarity=0.132  Sum_probs=37.9

Q ss_pred             CCCeEEEEcCcchH---HHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccc
Q 026513           70 GGELFLDYGTGSGI---LGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFT  134 (237)
Q Consensus        70 ~~~~vLDlG~G~G~---~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~  134 (237)
                      .++++|-.|+++|.   ++..+++.| .+|+.++-++..++...+.+...+.     ++.++.+|+.+
T Consensus         6 ~~k~ilItGas~~iG~~ia~~l~~~G-~~v~~~~r~~~~~~~~~~~~~~~~~-----~~~~~~~D~~~   67 (253)
T PRK06172          6 SGKVALVTGGAAGIGRATALAFAREG-AKVVVADRDAAGGEETVALIREAGG-----EALFVACDVTR   67 (253)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcC-CEEEEEeCCHHHHHHHHHHHHhcCC-----ceEEEEcCCCC
Confidence            36789999976542   233344555 4699999998877666555544332     36677888764

>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function

Probab=80.97  E-value=4  Score=30.99  Aligned_cols=42  Identities=21%  Similarity=0.250  Sum_probs=27.3

Q ss_pred             EEcCcch--HHHHHHH--H-hCCCeEEEEeCCHHHHHHHHHH--HHHcC
Q 026513           76 DYGTGSG--ILGIAAI--K-FGAAMSVGADIDPQAIKSAHQN--AALNN  117 (237)
Q Consensus        76 DlG~G~G--~~~~~la--~-~~~~~v~~vD~s~~~i~~a~~~--~~~~~  117 (237)
                      |+|++.|  .....+.  . .+..+|+++|.+|...+..+++  +..++
T Consensus         1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~~~~~l~~   49 (167)
T PF05050_consen    1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRNLNLALND   49 (167)
T ss_dssp             EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH--HHHTT
T ss_pred             CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHHHHHHhcC
Confidence            8999999  5555443  2 2467899999999999999999  65554

; PDB: 2PY6_A.

>PRK05597 molybdopterin biosynthesis protein MoeB; Validated

Probab=80.92  E-value=14  Score=32.68  Aligned_cols=33  Identities=18%  Similarity=0.067  Sum_probs=26.3

Q ss_pred             CCeEEEEcCcc-hH-HHHHHHHhCCCeEEEEeCCH
Q 026513           71 GELFLDYGTGS-GI-LGIAAIKFGAAMSVGADIDP  103 (237)
Q Consensus        71 ~~~vLDlG~G~-G~-~~~~la~~~~~~v~~vD~s~  103 (237)
                      +.+||-+|||. |. .+..|+..|..+++.+|.+.
T Consensus        28 ~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~   62 (355)
T PRK05597         28 DAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDT   62 (355)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence            56899999995 54 45567788999999999864

>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase

Probab=80.88  E-value=11  Score=32.88  Aligned_cols=101  Identities=15%  Similarity=0.277  Sum_probs=56.9

Q ss_pred             ccCCCeEEEEcCcc-hHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccc
Q 026513           68 IKGGELFLDYGTGS-GILGIAAIKF-GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVV  145 (237)
Q Consensus        68 ~~~~~~vLDlG~G~-G~~~~~la~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  145 (237)
                      +.++.+||-.|+|. |..++.+++. |..+|++++.++...+.+++    .+...   -+.....+...           
T Consensus       180 ~~~g~~vLI~g~g~vG~a~i~lak~~G~~~Vi~~~~~~~~~~~~~~----~g~~~---vv~~~~~~~~~-----------  241 (363)
T cd08279         180 VRPGDTVAVIGCGGVGLNAIQGARIAGASRIIAVDPVPEKLELARR----FGATH---TVNASEDDAVE-----------  241 (363)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHH----hCCeE---EeCCCCccHHH-----------
Confidence            45778888887752 5555566654 65569999998887766542    23221   01100111110           


Q ss_pred             cccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEec
Q 026513          146 EDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISG  195 (237)
Q Consensus       146 ~~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~  195 (237)
                            .+........+|+++.....   ...+..+.+.|+++|.++..+
T Consensus       242 ------~l~~~~~~~~vd~vld~~~~---~~~~~~~~~~l~~~G~~v~~g  282 (363)
T cd08279         242 ------AVRDLTDGRGADYAFEAVGR---AATIRQALAMTRKGGTAVVVG  282 (363)
T ss_pred             ------HHHHHcCCCCCCEEEEcCCC---hHHHHHHHHHhhcCCeEEEEe
Confidence                  01112224569999865432   134566777889999988643

Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me

>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=80.73  E-value=27  Score=30.47  Aligned_cols=111  Identities=22%  Similarity=0.205  Sum_probs=62.8

Q ss_pred             CeEEEEcCcc--hHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHH-------cCCCCCc--ceEEeccCcccccccccc
Q 026513           72 ELFLDYGTGS--GILGIAAIKFGAAMSVGADIDPQAIKSAHQNAAL-------NNIGPKK--MKLHLVPDRTFTASMNER  140 (237)
Q Consensus        72 ~~vLDlG~G~--G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~-------~~~~~~~--~~v~~~~~d~~~~~~~~~  140 (237)
                      .+|--||+|+  ..++..++..| .+|+..|.+++.++.++..+..       .++....  -++.+. .+..       
T Consensus         8 ~~VaVIGaG~MG~giA~~~a~aG-~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~-~~l~-------   78 (321)
T PRK07066          8 KTFAAIGSGVIGSGWVARALAHG-LDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFV-ATIE-------   78 (321)
T ss_pred             CEEEEECcCHHHHHHHHHHHhCC-CeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceec-CCHH-------
Confidence            4688888885  24455555564 5599999999988776654431       2211000  001110 0110       


Q ss_pred             ccccccccccccccCCCCCCceeEEEEeCCh--HHHHHHHHHHhHhcCCCeEEEEeccCCCCHHHHHHHH
Q 026513          141 VDGVVEDLSSHKIRGISQTEKYDVVIANILL--NPLLQLADHIVSYAKPGAVVGISGILSEQLPHIINRY  208 (237)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~--~~~~~~l~~~~~~L~~gG~liis~~~~~~~~~~~~~~  208 (237)
                                    ..  -...|+|+-+.+-  ..-..++..+.+.++|+.+|..+.. .-...++...+
T Consensus        79 --------------~a--v~~aDlViEavpE~l~vK~~lf~~l~~~~~~~aIlaSnTS-~l~~s~la~~~  131 (321)
T PRK07066         79 --------------AC--VADADFIQESAPEREALKLELHERISRAAKPDAIIASSTS-GLLPTDFYARA  131 (321)
T ss_pred             --------------HH--hcCCCEEEECCcCCHHHHHHHHHHHHHhCCCCeEEEECCC-ccCHHHHHHhc
Confidence                          00  1467999987763  3345678899999999884444332 33445555443

>PRK05866 short chain dehydrogenase; Provisional

Probab=80.65  E-value=7.3  Score=33.15  Aligned_cols=58  Identities=19%  Similarity=0.139  Sum_probs=37.1

Q ss_pred             CCeEEEEcCcchH---HHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccc
Q 026513           71 GELFLDYGTGSGI---LGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFT  134 (237)
Q Consensus        71 ~~~vLDlG~G~G~---~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~  134 (237)
                      ++++|-.|+++|.   ++..+++.| .+|++++-+++.++...+.+...+.     ++.++..|+.+
T Consensus        40 ~k~vlItGasggIG~~la~~La~~G-~~Vi~~~R~~~~l~~~~~~l~~~~~-----~~~~~~~Dl~d  100 (293)
T PRK05866         40 GKRILLTGASSGIGEAAAEQFARRG-ATVVAVARREDLLDAVADRITRAGG-----DAMAVPCDLSD  100 (293)
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHhcCC-----cEEEEEccCCC
Confidence            5788988876552   233344454 4699999998877766555543332     25677788764

>PRK12921 2-dehydropantoate 2-reductase; Provisional

Probab=80.63  E-value=17  Score=30.87  Aligned_cols=35  Identities=14%  Similarity=0.096  Sum_probs=26.9

Q ss_pred             CceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEe
Q 026513          160 EKYDVVIANILLNPLLQLADHIVSYAKPGAVVGIS  194 (237)
Q Consensus       160 ~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis  194 (237)
                      ..+|+|+...+-.....+++.+...+.++..++..
T Consensus        67 ~~~d~vilavk~~~~~~~~~~l~~~~~~~~~ii~~  101 (305)
T PRK12921         67 GPFDLVILAVKAYQLDAAIPDLKPLVGEDTVIIPL  101 (305)
T ss_pred             CCCCEEEEEecccCHHHHHHHHHhhcCCCCEEEEe
Confidence            57999988776666777888888888888766654

>cd08234 threonine_DH_like L-threonine dehydrogenase

Probab=80.57  E-value=13  Score=31.72  Aligned_cols=99  Identities=23%  Similarity=0.329  Sum_probs=56.7

Q ss_pred             ccCCCeEEEEcCcc-hHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccc
Q 026513           68 IKGGELFLDYGTGS-GILGIAAIKF-GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVV  145 (237)
Q Consensus        68 ~~~~~~vLDlG~G~-G~~~~~la~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  145 (237)
                      +.++.+||-.|+|. |...+.+++. |...+++++.+++..+.+++.    +..      .++..+-.+.  .       
T Consensus       157 ~~~g~~vlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~----g~~------~~~~~~~~~~--~-------  217 (334)
T cd08234         157 IKPGDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNEEKLELAKKL----GAT------ETVDPSREDP--E-------  217 (334)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHh----CCe------EEecCCCCCH--H-------
Confidence            45788999998652 4555555654 545589999998877766432    322      1111110000  0       


Q ss_pred             cccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEec
Q 026513          146 EDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISG  195 (237)
Q Consensus       146 ~~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~  195 (237)
                             .........+|+++.....   ...+..+.+.|+++|.++..+
T Consensus       218 -------~~~~~~~~~vd~v~~~~~~---~~~~~~~~~~l~~~G~~v~~g  257 (334)
T cd08234         218 -------AQKEDNPYGFDVVIEATGV---PKTLEQAIEYARRGGTVLVFG  257 (334)
T ss_pred             -------HHHHhcCCCCcEEEECCCC---hHHHHHHHHHHhcCCEEEEEe
Confidence                   0001123579999975432   234566677889999998644

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.

>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases

Probab=80.50  E-value=5.7  Score=34.85  Aligned_cols=100  Identities=17%  Similarity=0.212  Sum_probs=55.7

Q ss_pred             ccCCCeEEEEcCcc-hHHHHHHHH-hCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccC--ccccccccccccc
Q 026513           68 IKGGELFLDYGTGS-GILGIAAIK-FGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPD--RTFTASMNERVDG  143 (237)
Q Consensus        68 ~~~~~~vLDlG~G~-G~~~~~la~-~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~--d~~~~~~~~~~~~  143 (237)
                      +.+|.+||-.|+|. |..+..+++ .|...+++++.++...+.+++    .+...   -+.....  +..          
T Consensus       181 ~~~g~~vlI~g~g~vG~~a~~~a~~~G~~~v~~~~~~~~~~~~~~~----~g~~~---~v~~~~~~~~~~----------  243 (365)
T cd05279         181 VTPGSTCAVFGLGGVGLSVIMGCKAAGASRIIAVDINKDKFEKAKQ----LGATE---CINPRDQDKPIV----------  243 (365)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH----hCCCe---ecccccccchHH----------
Confidence            46788888887753 444455555 466678999988887776643    23221   0111011  100          


Q ss_pred             cccccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcC-CCeEEEEec
Q 026513          144 VVEDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAK-PGAVVGISG  195 (237)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~-~gG~liis~  195 (237)
                        +     .+.... .+.+|+++.....   ...+....+.|+ ++|.++..+
T Consensus       244 --~-----~l~~~~-~~~~d~vid~~g~---~~~~~~~~~~l~~~~G~~v~~g  285 (365)
T cd05279         244 --E-----VLTEMT-DGGVDYAFEVIGS---ADTLKQALDATRLGGGTSVVVG  285 (365)
T ss_pred             --H-----HHHHHh-CCCCcEEEECCCC---HHHHHHHHHHhccCCCEEEEEe
Confidence              0     001111 2468999854321   234556677788 999988754

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall

>PRK06500 short chain dehydrogenase; Provisional

Probab=80.38  E-value=22  Score=28.84  Aligned_cols=54  Identities=20%  Similarity=0.169  Sum_probs=30.9

Q ss_pred             CCeEEEEcCcchH---HHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccc
Q 026513           71 GELFLDYGTGSGI---LGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTF  133 (237)
Q Consensus        71 ~~~vLDlG~G~G~---~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~  133 (237)
                      ++++|-.|++.|.   ++..+++.|. +|++++.++..++...+.+   +.     ++.++..|..
T Consensus         6 ~k~vlItGasg~iG~~la~~l~~~g~-~v~~~~r~~~~~~~~~~~~---~~-----~~~~~~~D~~   62 (249)
T PRK06500          6 GKTALITGGTSGIGLETARQFLAEGA-RVAITGRDPASLEAARAEL---GE-----SALVIRADAG   62 (249)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC-EEEEecCCHHHHHHHHHHh---CC-----ceEEEEecCC
Confidence            5678888876542   2333445554 6889988876554433322   21     2556666765

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=80.31  E-value=11  Score=32.32  Aligned_cols=87  Identities=18%  Similarity=0.190  Sum_probs=50.6

Q ss_pred             CCCeEEEEcCcchH-HHHHHH-HhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccc
Q 026513           70 GGELFLDYGTGSGI-LGIAAI-KFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVED  147 (237)
Q Consensus        70 ~~~~vLDlG~G~G~-~~~~la-~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  147 (237)
                      .+++++-+|+|.-. .....+ ..|. +|+.+|.++...+.++.    .+...    +.+  .+..              
T Consensus       151 ~g~kvlViG~G~iG~~~a~~L~~~Ga-~V~v~~r~~~~~~~~~~----~G~~~----~~~--~~l~--------------  205 (296)
T PRK08306        151 HGSNVLVLGFGRTGMTLARTLKALGA-NVTVGARKSAHLARITE----MGLSP----FHL--SELA--------------  205 (296)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHH----cCCee----ecH--HHHH--------------
Confidence            57899999998633 233333 4554 89999999876555432    23221    110  1110              


Q ss_pred             cccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEE
Q 026513          148 LSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGI  193 (237)
Q Consensus       148 ~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~lii  193 (237)
                             ..  -..+|+||...|...   +-+.+...+++++.++-
T Consensus       206 -------~~--l~~aDiVI~t~p~~~---i~~~~l~~~~~g~vIID  239 (296)
T PRK08306        206 -------EE--VGKIDIIFNTIPALV---LTKEVLSKMPPEALIID  239 (296)
T ss_pred             -------HH--hCCCCEEEECCChhh---hhHHHHHcCCCCcEEEE
Confidence                   11  246899998665432   23456667888887763

>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=80.28  E-value=8.8  Score=31.21  Aligned_cols=58  Identities=16%  Similarity=0.163  Sum_probs=35.7

Q ss_pred             CCCeEEEEcCcchHHHHH----HHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccc
Q 026513           70 GGELFLDYGTGSGILGIA----AIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFT  134 (237)
Q Consensus        70 ~~~~vLDlG~G~G~~~~~----la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~  134 (237)
                      +++++|-.|++.| ++..    +++.|. +|+.++.++..++.+.+.+...+.     ++.++..|..+
T Consensus         4 ~~~~~lItG~~g~-iG~~~a~~l~~~G~-~vi~~~r~~~~~~~~~~~~~~~~~-----~~~~~~~D~~~   65 (253)
T PRK08217          4 KDKVIVITGGAQG-LGRAMAEYLAQKGA-KLALIDLNQEKLEEAVAECGALGT-----EVRGYAANVTD   65 (253)
T ss_pred             CCCEEEEECCCch-HHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCC-----ceEEEEcCCCC
Confidence            3678998887544 3333    344554 689999998776665555543332     36666777653

>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=80.24  E-value=0.59  Score=36.35  Aligned_cols=39  Identities=18%  Similarity=0.333  Sum_probs=31.4

Q ss_pred             CCCCCceeEEEEeCChHHHH-----HHHHHHhHhcCCCeEEEEe
Q 026513          156 ISQTEKYDVVIANILLNPLL-----QLADHIVSYAKPGAVVGIS  194 (237)
Q Consensus       156 ~~~~~~fD~I~~n~~~~~~~-----~~l~~~~~~L~~gG~liis  194 (237)
                      .+.+.+.|+|++.-+++++.     ..++.+.+.|||||+|-++
T Consensus        42 ~F~dns~d~iyaeHvlEHlt~~Eg~~alkechr~Lrp~G~LriA   85 (185)
T COG4627          42 MFEDNSVDAIYAEHVLEHLTYDEGTSALKECHRFLRPGGKLRIA   85 (185)
T ss_pred             cCCCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCcEEEEE
Confidence            34467899999877776653     5689999999999999885

>PRK05396 tdh L-threonine 3-dehydrogenase; Validated

Probab=80.24  E-value=14  Score=31.85  Aligned_cols=101  Identities=21%  Similarity=0.249  Sum_probs=56.4

Q ss_pred             cCCCeEEEEcCcc-hHHHHHHHH-hCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccc
Q 026513           69 KGGELFLDYGTGS-GILGIAAIK-FGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVE  146 (237)
Q Consensus        69 ~~~~~vLDlG~G~-G~~~~~la~-~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  146 (237)
                      .+|.+|+-.|+|. |..+..+++ .|..++++++.++...+.+++    .+...   -+.....+..+            
T Consensus       162 ~~g~~vlV~~~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~----lg~~~---~~~~~~~~~~~------------  222 (341)
T PRK05396        162 LVGEDVLITGAGPIGIMAAAVAKHVGARHVVITDVNEYRLELARK----MGATR---AVNVAKEDLRD------------  222 (341)
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH----hCCcE---EecCccccHHH------------
Confidence            4678888877654 555555665 465578888888876665543    23221   01110111100            


Q ss_pred             ccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEecc
Q 026513          147 DLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGI  196 (237)
Q Consensus       147 ~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~~  196 (237)
                           .+........+|+|+.....   ...+..+.+.|+++|.++..+.
T Consensus       223 -----~~~~~~~~~~~d~v~d~~g~---~~~~~~~~~~l~~~G~~v~~g~  264 (341)
T PRK05396        223 -----VMAELGMTEGFDVGLEMSGA---PSAFRQMLDNMNHGGRIAMLGI  264 (341)
T ss_pred             -----HHHHhcCCCCCCEEEECCCC---HHHHHHHHHHHhcCCEEEEEec
Confidence                 01112224568999874322   2244667778899999988654

>PRK08818 prephenate dehydrogenase; Provisional

Probab=80.23  E-value=10  Score=33.78  Aligned_cols=33  Identities=18%  Similarity=0.219  Sum_probs=26.2

Q ss_pred             CceeEEEEeCChHHHHHHHHHHhHh---cCCCeEEE
Q 026513          160 EKYDVVIANILLNPLLQLADHIVSY---AKPGAVVG  192 (237)
Q Consensus       160 ~~fD~I~~n~~~~~~~~~l~~~~~~---L~~gG~li  192 (237)
                      ..+|+|+...|.....+++.++...   |+||..+.
T Consensus        50 ~~aDlVilavPv~~~~~~l~~l~~~~~~l~~~~iVt   85 (370)
T PRK08818         50 QRADVLIFSAPIRHTAALIEEYVALAGGRAAGQLWL   85 (370)
T ss_pred             cCCCEEEEeCCHHHHHHHHHHHhhhhcCCCCCeEEE
Confidence            3689999999999999999888876   67765443

>PRK07677 short chain dehydrogenase; Provisional

Probab=80.22  E-value=7.7  Score=31.87  Aligned_cols=58  Identities=16%  Similarity=0.112  Sum_probs=36.6

Q ss_pred             CCeEEEEcCcchH---HHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccc
Q 026513           71 GELFLDYGTGSGI---LGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFT  134 (237)
Q Consensus        71 ~~~vLDlG~G~G~---~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~  134 (237)
                      |+++|-.|++.|.   ++..+++.|. +|++++-++...+...+.+...+ .    ++.++..|..+
T Consensus         1 ~k~~lItG~s~giG~~ia~~l~~~G~-~Vi~~~r~~~~~~~~~~~~~~~~-~----~~~~~~~D~~~   61 (252)
T PRK07677          1 EKVVIITGGSSGMGKAMAKRFAEEGA-NVVITGRTKEKLEEAKLEIEQFP-G----QVLTVQMDVRN   61 (252)
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC-C----cEEEEEecCCC
Confidence            4578888886662   3333445555 69999998877666555554333 1    36677788754

>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []

Probab=80.08  E-value=43  Score=29.84  Aligned_cols=58  Identities=16%  Similarity=0.187  Sum_probs=37.5

Q ss_pred             hhHHHHHHHHHhhccCCCeEEEEcCcchH----HHHHHHHh----CCCeEEEEeC----CHHHHHHHHHHHH
Q 026513           55 ATTKLCLLLLRRLIKGGELFLDYGTGSGI----LGIAAIKF----GAAMSVGADI----DPQAIKSAHQNAA  114 (237)
Q Consensus        55 ~~~~~~~~~l~~~~~~~~~vLDlG~G~G~----~~~~la~~----~~~~v~~vD~----s~~~i~~a~~~~~  114 (237)
                      ...+.+++.+..  ...-.|+|+|.|.|.    +-..++..    +.-+|||++.    +...++.+.+++.
T Consensus        97 taNqaIleA~~g--~~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~~g~rL~  166 (374)
T PF03514_consen   97 TANQAILEAFEG--ERRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQETGRRLA  166 (374)
T ss_pred             chhHHHHHHhcc--CcceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHHHHHHHH
Confidence            333444444432  234579999999993    44455543    2347999999    8888887777653

Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.

>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase

Probab=80.03  E-value=11  Score=28.35  Aligned_cols=43  Identities=23%  Similarity=0.261  Sum_probs=27.9

Q ss_pred             CCCeEEEEcCcc-h-HHHHHHHHhCCCeEEEEeCCHHHHHHHHHH
Q 026513           70 GGELFLDYGTGS-G-ILGIAAIKFGAAMSVGADIDPQAIKSAHQN  112 (237)
Q Consensus        70 ~~~~vLDlG~G~-G-~~~~~la~~~~~~v~~vD~s~~~i~~a~~~  112 (237)
                      .+.+++-+|+|. | .....++..+...++.+|.++...+...+.
T Consensus        18 ~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~   62 (155)
T cd01065          18 KGKKVLILGAGGAARAVAYALAELGAAKIVIVNRTLEKAKALAER   62 (155)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHH
Confidence            467899999974 2 222333344556799999998776654443

Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	237
3grz_A	205	Crystal Structure Of Ribosomal Protein L11 Methylas		1e-17
1ufk_A	254	Crystal Structure Of Tt0836 Length = 254		1e-12
3cjt_A	254	Ribosomal Protein L11 Methyltransferase (prma) In C		1e-11

>pdb|3GRZ|A Chain A, Crystal Structure Of Ribosomal Protein L11 Methylase From Lactobacillus Delbrueckii Subsp. Bulgaricus Length = 205

Iteration: 1
 Score = 86.7 bits (213), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 67/198 (33%), Positives = 93/198 (46%), Gaps = 28/198 (14%)
Query: 15  FHPVEVTKGLWIVPEW-GAPPDVQATNII-LNPGLAFGSGEHATTKXXXXXXXXXIKGGE 72
           +H + +++ L IVPEW    P  +   II L+PGLAFG+G H TT+         +    
Sbjct: 3   YHVINLSRHLAIVPEWEDYQPVFKDQEIIRLDPGLAFGTGNHQTTQLAMLGIERAMVKPL 62
Query: 73  LFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRT 132
              D GTGSGIL IAA K GA   +  DI  +++ +A +NAALN I    ++        
Sbjct: 63  TVADVGTGSGILAIAAHKLGAKSVLATDISDESMTAAEENAALNGIYDIALQ-------- 114
Query: 133 FTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVG 192
              S+   VDG                 K+D+++ANIL   LL L   + S+      V 
Sbjct: 115 -KTSLLADVDG-----------------KFDLIVANILAEILLDLIPQLDSHLNEDGQVI 156
Query: 193 ISGILSEQLPHIINRYSE 210
            SGI   QLP I    +E
Sbjct: 157 FSGIDYLQLPKIEQALAE 174

>pdb|1UFK|A Chain A, Crystal Structure Of Tt0836 Length = 254

Iteration: 1
 Score = 70.1 bits (170), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 46/164 (28%), Positives = 73/164 (44%), Gaps = 27/164 (16%)
Query: 41  IILNPGLAFGSGEHATTKXXXXXXXXXIKGGELFLDYGTGSGILGIAAIKFGAAMSVGAD 100
           +++ PG+AFG+G H TT+         ++ G+  LD GTGSG+L IAA K G   ++G D
Sbjct: 91  LVIEPGMAFGTGHHETTRLALKALARHLRPGDKVLDLGTGSGVLAIAAEKLGGK-ALGVD 149
Query: 101 IDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDLSSHKIRGISQTE 160
           IDP  +  A  NA  N + P+ ++  L     F                           
Sbjct: 150 IDPMVLPQAEANAKRNGVRPRFLEGSLEAALPFG-------------------------- 183
Query: 161 KYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILSEQLPHI 204
            +D+++AN+       LA        PG    ++GIL ++ P +
Sbjct: 184 PFDLLVANLYAELHAALAPRYREALVPGGRALLTGILKDRAPLV 227

>pdb|3CJT|A Chain A, Ribosomal Protein L11 Methyltransferase (prma) In Complex With Dimethylated Ribosomal Protein L11 Length = 254

Iteration: 1
 Score = 66.6 bits (161), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 45/164 (27%), Positives = 72/164 (43%), Gaps = 27/164 (16%)
Query: 41  IILNPGLAFGSGEHATTKXXXXXXXXXIKGGELFLDYGTGSGILGIAAIKFGAAMSVGAD 100
           +++ PG+AFG+G   TT+         ++ G+  LD GTGSG+L IAA K G   ++G D
Sbjct: 91  LVIEPGMAFGTGHAETTRLALKALARHLRPGDKVLDLGTGSGVLAIAAEKLGGK-ALGVD 149
Query: 101 IDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDLSSHKIRGISQTE 160
           IDP  +  A  NA  N + P+ ++  L     F                           
Sbjct: 150 IDPMVLPQAEANAKRNGVRPRFLEGSLEAALPFG-------------------------- 183
Query: 161 KYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILSEQLPHI 204
            +D+++AN+       LA        PG    ++GIL ++ P +
Sbjct: 184 PFDLLVANLYAELHAALAPRYREALVPGGRALLTGILKDRAPLV 227

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	237
3grz_A	205	L11 mtase, ribosomal protein L11 methyltransferase	5e-77
2nxc_A	254	L11 mtase, ribosomal protein L11 methyltransferase	3e-72
1ne2_A	200	Hypothetical protein TA1320; structural genomics,	7e-23
1wy7_A	207	Hypothetical protein PH1948; seven-stranded beta s	2e-12
1l3i_A	192	Precorrin-6Y methyltransferase/putative decarboxyl	6e-11
3evz_A	230	Methyltransferase; NYSGXRC, NEW YORK SGX research	4e-08
2ozv_A	260	Hypothetical protein ATU0636; structural genomics,	7e-08
1dus_A	194	MJ0882; hypothetical protein, methanococcus jannas	1e-07
3lec_A	230	NADB-rossmann superfamily protein; PSI, MCSG, stru	1e-07
3gnl_A	244	Uncharacterized protein, DUF633, LMOF2365_1472; st	1e-07
3g07_A	292	7SK snRNA methylphosphate capping enzyme; structur	3e-07
3kr9_A	225	SAM-dependent methyltransferase; class I rossmann-	4e-07
3c0k_A	396	UPF0064 protein YCCW; PUA domain, adoMet dependent	6e-07
2as0_A	396	Hypothetical protein PH1915; RNA methyltransferase	8e-07
3lpm_A	259	Putative methyltransferase; structural genomics, p	4e-06
3dmg_A	381	Probable ribosomal RNA small subunit methyltransf;	6e-06
2pjd_A	343	Ribosomal RNA small subunit methyltransferase C; g	1e-05
4dmg_A	393	Putative uncharacterized protein TTHA1493; rRNA, m	1e-05
2b78_A	385	Hypothetical protein SMU.776; structure genomics,	3e-05
1nv8_A	284	HEMK protein; class I adoMet-dependent methyltrans	3e-05
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	4e-05
3gdh_A	241	Trimethylguanosine synthase homolog; M7G, CAP, dim	5e-05
3jwg_A	219	HEN1, methyltransferase type 12; 1.90A {Clostridiu	7e-05
2h00_A	254	Methyltransferase 10 domain containing protein; st	1e-04
4dzr_A	215	Protein-(glutamine-N5) methyltransferase, release	1e-04
3q87_B	170	N6 adenine specific DNA methylase; SAM-methyltrans	1e-04
2b3t_A	276	Protein methyltransferase HEMK; translation termin	1e-04
3ll7_A	410	Putative methyltransferase; methytransferase, stru	2e-04
3axs_A	392	Probable N(2),N(2)-dimethylguanosine tRNA methylt	2e-04
3cc8_A	230	Putative methyltransferase; structural genomics, j	2e-04
3uwp_A	438	Histone-lysine N-methyltransferase, H3 lysine-79;	2e-04
1u2z_A	433	Histone-lysine N-methyltransferase, H3 lysine-79 s	2e-04
3tma_A	354	Methyltransferase; thump domain; 2.05A {Thermus th	2e-04
2frn_A	278	Hypothetical protein PH0793; structural genomics,	3e-04
3htx_A	950	HEN1; HEN1, small RNA methyltransferase, protein-R	3e-04
3ocj_A	305	Putative exported protein; structural genomics, PS	3e-04
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	3e-04
2yx1_A	336	Hypothetical protein MJ0883; methyl transferase, t	3e-04
1ve3_A	227	Hypothetical protein PH0226; dimer, riken structur	3e-04
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	4e-04
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	4e-04
3bzb_A	281	Uncharacterized protein; RED ALGA, protein structu	5e-04
2yxd_A	183	Probable cobalt-precorrin-6Y C(15)-methyltransfer	5e-04
3l8d_A	242	Methyltransferase; structural genomics, PSI, nysgr	5e-04
1wxx_A	382	TT1595, hypothetical protein TTHA1280; thermus the	7e-04
3i9f_A	170	Putative type 11 methyltransferase; structural gen	7e-04
2y1w_A	348	Histone-arginine methyltransferase CARM1; histone	8e-04

>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp} Length = 205

 Score =  230 bits (588), Expect = 5e-77
 Identities = 68/223 (30%), Positives = 100/223 (44%), Gaps = 29/223 (13%)

Query: 13  QSFHPVEVTKGLWIVPEW--GAPPDVQATNIILNPGLAFGSGEHATTKLCLLLLRRLIKG 70
           + +H + +++ L IVPEW    P       I L+PGLAFG+G H TT+L +L + R +  
Sbjct: 1   KYYHVINLSRHLAIVPEWEDYQPVFKDQEIIRLDPGLAFGTGNHQTTQLAMLGIERAMVK 60

Query: 71  GELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPD 130
                D GTGSGIL IAA K GA   +  DI  +++ +A +NAALN I    ++   +  
Sbjct: 61  PLTVADVGTGSGILAIAAHKLGAKSVLATDISDESMTAAEENAALNGIYDIALQKTSLLA 120

Query: 131 RTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAV 190
                                         K+D+++ANIL   LL L   + S+      
Sbjct: 121 --------------------------DVDGKFDLIVANILAEILLDLIPQLDSHLNEDGQ 154

Query: 191 VGISGILSEQLPHIINRYSE-FLEDILVSEMDDWTCVSGKKKR 232
           V  SGI   QLP I    +E   +  L      W  ++  +K 
Sbjct: 155 VIFSGIDYLQLPKIEQALAENSFQIDLKMRAGRWIGLAISRKH 197

>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A* Length = 254

 Score =  219 bits (561), Expect = 3e-72
 Identities = 54/229 (23%), Positives = 93/229 (40%), Gaps = 30/229 (13%)

Query: 3   EQCNWIKKTQQSFHPVEVTKGLWIVPEWGAPPDVQATNIILNPGLAFGSGEHATTKLCLL 62
              +W++  ++   P        ++  W          +++ PG+AFG+G H TT+L L 
Sbjct: 55  GDEDWLEAWRRDLKPALAPP-FVVLAPWHTWEG-AEIPLVIEPGMAFGTGHHETTRLALK 112

Query: 63  LLRRLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKK 122
            L R ++ G+  LD GTGSG+L IAA K G   ++G DIDP  +  A  NA  N      
Sbjct: 113 ALARHLRPGDKVLDLGTGSGVLAIAAEKLGGK-ALGVDIDPMVLPQAEANAKRNG----- 166

Query: 123 MKLHLVPDRTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIV 182
                V  R    S+   +                    +D+++AN+       LA    
Sbjct: 167 -----VRPRFLEGSLEAALP----------------FGPFDLLVANLYAELHAALAPRYR 205

Query: 183 SYAKPGAVVGISGILSEQLPHIINRYSEF-LEDILVSEMDDWTCVSGKK 230
               PG    ++GIL ++ P +    +      +  +   +W  ++  +
Sbjct: 206 EALVPGGRALLTGILKDRAPLVREAMAGAGFRPLEEAAEGEWVLLAYGR 254

>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32 Length = 200

 Score = 91.2 bits (226), Expect = 7e-23
 Identities = 31/174 (17%), Positives = 58/174 (33%), Gaps = 33/174 (18%)

Query: 49  FGSGEHATTKLCLLLLRRLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKS 108
           + +         + +      GG   +D GTG+GIL   +   GA      DIDP AI++
Sbjct: 30  YPTDASTAAYFLIEIYNDGNIGGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIET 89

Query: 109 AHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIAN 168
           A +N    N                       +   V ++S           KYD  I N
Sbjct: 90  AKRNCGGVNF----------------------MVADVSEIS----------GKYDTWIMN 117

Query: 169 ILLNPLLQLAD-HIVSYAKPGAVVGISGILSEQLPHIINRYSEFLEDILVSEMD 221
                +++ +D   +  A   ++   S   ++    +   +S   +     ++ 
Sbjct: 118 PPFGSVVKHSDRAFIDKAFETSMWIYSIGNAKARDFLRREFSARGDVFREEKVY 171

>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32 Length = 207

 Score = 63.2 bits (153), Expect = 2e-12
 Identities = 28/178 (15%), Positives = 52/178 (29%), Gaps = 31/178 (17%)

Query: 49  FGSGEHATTKLCLLLLRRLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKS 108
           + +  +A ++L  L        G++  D G G+G+L   A+  GA   +  ++D +A+  
Sbjct: 28  YRTPGNAASELLWLAYSLGDIEGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDV 87

Query: 109 AHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIAN 168
             +N        K     +                                 + D+VI N
Sbjct: 88  LIENLGEFKGKFKVFIGDVSEFN----------------------------SRVDIVIMN 119

Query: 169 ILLNPLLQLAD--HIVSYAKPGAVV-GISGILSEQLPHIINRYSEFLEDILVSEMDDW 223
                  + AD   ++   +   VV  I     E    I     E    +        
Sbjct: 120 PPFGSQRKHADRPFLLKAFEISDVVYSIHLAKPEVRRFIEKFSWEHGFVVTHRLTTKI 177

>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* Length = 192

 Score = 58.9 bits (143), Expect = 6e-11
 Identities = 22/151 (14%), Positives = 49/151 (32%), Gaps = 25/151 (16%)

Query: 61  LLLLRRL-IKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIG 119
            L++        ++ +D G G+G + +        +    D +P+AI +   N   + +G
Sbjct: 23  CLIMCLAEPGKNDVAVDVGCGTGGVTLELAGRVRRV-YAIDRNPEAISTTEMNLQRHGLG 81

Query: 120 PKKMKLHLVPDRTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLNPLLQLAD 179
                + L+      A                    + +    D+ +       L ++  
Sbjct: 82  DN---VTLMEGDAPEA--------------------LCKIPDIDIAVVGGSGGELQEILR 118

Query: 180 HIVSYAKPGAVVGISGILSEQLPHIINRYSE 210
            I    KPG  + ++ IL E     +    +
Sbjct: 119 IIKDKLKPGGRIIVTAILLETKFEAMECLRD 149

>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus} Length = 230

 Score = 51.0 bits (123), Expect = 4e-08
 Identities = 18/86 (20%), Positives = 34/86 (39%), Gaps = 4/86 (4%)

Query: 61  LLLLRRLIKGGELFLDYGTGSGILGIA-AIKFGAAMSVGADIDPQAIKSAHQNAALNNIG 119
            + L+  ++GGE+ L+ GTG   +    A KF        ++D +  + A +N   NN  
Sbjct: 46  YIFLKTFLRGGEVALEIGTGHTAMMALMAEKFFNCKVTATEVDEEFFEYARRNIERNNSN 105

Query: 120 PKKMKLHLVPDRTFTASMNERVDGVV 145
              ++L           +    D + 
Sbjct: 106 ---VRLVKSNGGIIKGVVEGTFDVIF 128

>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} Length = 260

 Score = 50.7 bits (121), Expect = 7e-08
 Identities = 16/157 (10%), Positives = 41/157 (26%), Gaps = 10/157 (6%)

Query: 68  IKGGELFLDYGTGSGILGIA-AIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLH 126
                   D G G+G  G+A A +   A     +   +  + A ++  L +      ++ 
Sbjct: 34  DDRACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAFSARIE 93

Query: 127 LV--------PDRTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLNPLLQLA 178
           ++          R      +E    V+ +   +        +        +         
Sbjct: 94  VLEADVTLRAKARVEAGLPDEHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWI 153

Query: 179 DHIVSYAKPGAVVGISGILSEQLPHIINRYSEFLEDI 215
               +    G  + +     + +  II         +
Sbjct: 154 RTASAIMVSGGQLSLI-SRPQSVAEIIAACGSRFGGL 189

>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 Length = 194

 Score = 49.6 bits (119), Expect = 1e-07
 Identities = 23/79 (29%), Positives = 39/79 (49%), Gaps = 8/79 (10%)

Query: 62  LLLRRL-IKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGP 120
           +L+  + +   +  LD G G G++GIA      +    ADI+ +AIK A +N  LNN+  
Sbjct: 43  ILVENVVVDKDDDILDLGCGYGVIGIALADEVKST-TMADINRRAIKLAKENIKLNNLDN 101

Query: 121 KKMKLHL------VPDRTF 133
             +++        V DR +
Sbjct: 102 YDIRVVHSDLYENVKDRKY 120

>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae} Length = 230

 Score = 49.9 bits (119), Expect = 1e-07
 Identities = 12/62 (19%), Positives = 24/62 (38%), Gaps = 1/62 (1%)

Query: 61  LLLLRRLIKGGELFLDYGTGSGILGIAAIKFGAAMSV-GADIDPQAIKSAHQNAALNNIG 119
           L  +   +  G   LD G+    L I  ++ G        ++     +SA +N + + + 
Sbjct: 12  LQKVANYVPKGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHGLT 71

Query: 120 PK 121
            K
Sbjct: 72  SK 73

>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str} Length = 244

 Score = 49.9 bits (119), Expect = 1e-07
 Identities = 11/62 (17%), Positives = 21/62 (33%), Gaps = 1/62 (1%)

Query: 61  LLLLRRLIKGGELFLDYGTGSGILGIAAIKFGAAMSV-GADIDPQAIKSAHQNAALNNIG 119
           L  +   I   E   D G+    L   A+K   A      ++     +SA +    + + 
Sbjct: 12  LEKVASYITKNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGLT 71

Query: 120 PK 121
            +
Sbjct: 72  EQ 73

>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} Length = 292

 Score = 49.2 bits (116), Expect = 3e-07
 Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 1/54 (1%)

Query: 61  LLLLRRLIKGGELFLDYGTGSGILGIA-AIKFGAAMSVGADIDPQAIKSAHQNA 113
           L +L+     G   LD G   G L ++ A K+G +  VG DID + I SA QN 
Sbjct: 37  LRVLKPEWFRGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNI 90

>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A* Length = 225

 Score = 48.3 bits (115), Expect = 4e-07
 Identities = 14/62 (22%), Positives = 26/62 (41%), Gaps = 1/62 (1%)

Query: 61  LLLLRRLIKGGELFLDYGTGSGILGIAAIKFGAAMSV-GADIDPQAIKSAHQNAALNNIG 119
           L L+   +  G + LD G+    L I  ++ G   S    ++     +SA +N   + + 
Sbjct: 6   LELVASFVSQGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGLK 65

Query: 120 PK 121
            K
Sbjct: 66  EK 67

>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12} Length = 396

 Score = 48.5 bits (116), Expect = 6e-07
 Identities = 24/109 (22%), Positives = 45/109 (41%), Gaps = 27/109 (24%)

Query: 62  LLLRRLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPK 121
           L  RR ++     L+  + +G   ++A+  G +  V  D   +A+  A QN  LN +   
Sbjct: 213 LATRRYVENKR-VLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDL- 270

Query: 122 KMKLHLVPDRTFTASMNERVDGVVED----LSSHKIRGISQTEKYDVVI 166
                             + + V +D    L +++ RG    EK+DV++
Sbjct: 271 -----------------SKAEFVRDDVFKLLRTYRDRG----EKFDVIV 298

>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51 Length = 396

 Score = 48.2 bits (115), Expect = 8e-07
 Identities = 20/59 (33%), Positives = 32/59 (54%)

Query: 63  LLRRLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPK 121
            L + ++ G+  LD  T +G   I A   GA   +G D  P+AI++A +NA LN +  +
Sbjct: 210 ALEKWVQPGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGVEDR 268

>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} Length = 259

 Score = 45.5 bits (108), Expect = 4e-06
 Identities = 15/71 (21%), Positives = 28/71 (39%)

Query: 75  LDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFT 134
           +D  +G+GI+ +       A  VG +I  +    A ++ A N +  +   +     +   
Sbjct: 54  IDLCSGNGIIPLLLSTRTKAKIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKITD 113

Query: 135 ASMNERVDGVV 145
               ER D V 
Sbjct: 114 LIPKERADIVT 124

>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* Length = 381

 Score = 45.3 bits (107), Expect = 6e-06
 Identities = 19/94 (20%), Positives = 33/94 (35%), Gaps = 5/94 (5%)

Query: 29  EWGAPPDVQATNIILNPGLAFGSGEHATTKLCLLLLRRLIKGGEL----FLDYGTGSGIL 84
            + A            PG+         + L L  L+  +    +     LD G G G L
Sbjct: 188 AFSARILGAEYTFHHLPGVFSAGKVDPASLLLLEALQERLGPEGVRGRQVLDLGAGYGAL 247

Query: 85  GIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNI 118
            +   + GA + VG + D  ++ S  +    N +
Sbjct: 248 TLPLARMGAEV-VGVEDDLASVLSLQKGLEANAL 280

>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli} Length = 343

 Score = 44.7 bits (106), Expect = 1e-05
 Identities = 15/59 (25%), Positives = 27/59 (45%), Gaps = 2/59 (3%)

Query: 62  LLLRRLIKG-GELFLDYGTGSGILGIAAIKFGAAMSVGA-DIDPQAIKSAHQNAALNNI 118
           LLL  L        LD G G+G+L +A  +    + +   D+   A++++    A N +
Sbjct: 187 LLLSTLTPHTKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGV 245

>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus} Length = 393

 Score = 44.6 bits (106), Expect = 1e-05
 Identities = 19/108 (17%), Positives = 34/108 (31%), Gaps = 33/108 (30%)

Query: 63  LLRRLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKK 122
           L   +++ GE  LD  +  G   + A + GA  ++  D D +A+    Q A    +    
Sbjct: 207 LFEAMVRPGERVLDVYSYVGGFALRAARKGAY-ALAVDKDLEALGVLDQAALRLGL---- 261

Query: 123 MKLHLVPDRTFTASMNERVDGVVED----LSSHKIRGISQTEKYDVVI 166
                            RVD    +    L   +         +  V+
Sbjct: 262 -----------------RVDIRHGEALPTLRGLE-------GPFHHVL 285

>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A* Length = 385

 Score = 43.4 bits (103), Expect = 3e-05
 Identities = 12/66 (18%), Positives = 25/66 (37%), Gaps = 7/66 (10%)

Query: 63  LLRRLIKGGELFLD---YGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIG 119
           L+     G    L+   Y T +    +AA   GA  +   D+  ++   +  +   N++ 
Sbjct: 206 LINGSAAGKT-VLNLFSY-TAA--FSVAAAMGGAMATTSVDLAKRSRALSLAHFEANHLD 261

Query: 120 PKKMKL 125
               +L
Sbjct: 262 MANHQL 267

>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A* Length = 284

 Score = 42.9 bits (102), Expect = 3e-05
 Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 1/56 (1%)

Query: 64  LRRLIKGGEL-FLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNI 118
           L  + K G     D GTGSG +G++  KF  A+    D+  +A++ A +NA  + +
Sbjct: 116 LELIRKYGIKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAERHGV 171

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* Length = 267

 Score = 42.6 bits (100), Expect = 4e-05
 Identities = 25/148 (16%), Positives = 48/148 (32%), Gaps = 26/148 (17%)

Query: 49  FGSGEHATTKLCLLLLRRLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKS 108
            G G    T   L  +  L +   +  D G G+G   +           G D     I  
Sbjct: 26  QGPGSPEVTLKALSFIDNLTEKSLI-ADIGCGTGGQTMVLAGHVTGQVTGLDFLSGFIDI 84

Query: 109 AHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIAN 168
            ++NA  +           + +R         + G ++DL         + E+ D++ + 
Sbjct: 85  FNRNARQSG----------LQNRVTG------IVGSMDDLP-------FRNEELDLIWSE 121

Query: 169 -ILLNPLLQLA-DHIVSYAKPGAVVGIS 194
             + N   +   +    Y K G  + +S
Sbjct: 122 GAIYNIGFERGLNEWRKYLKKGGYLAVS 149

>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A* Length = 241

 Score = 42.3 bits (99), Expect = 5e-05
 Identities = 14/51 (27%), Positives = 20/51 (39%), Gaps = 1/51 (1%)

Query: 68  IKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNI 118
               ++ +D   G G   I     G  + +  DIDP  I  A  NA +  I
Sbjct: 76  SFKCDVVVDAFCGVGGNTIQFALTGMRV-IAIDIDPVKIALARNNAEVYGI 125

>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A Length = 219

 Score = 41.5 bits (97), Expect = 7e-05
 Identities = 21/123 (17%), Positives = 36/123 (29%), Gaps = 25/123 (20%)

Query: 75  LDYGTGSGILGIAAIKFGAAMSV-GADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTF 133
           +D G G G L    +K  +   + G D+    ++ A              K  L  DR  
Sbjct: 34  IDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERA--------------KDRLKIDR-L 78

Query: 134 TASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLN-----PLLQLADHIVSYAKPG 188
                +R+      L     R       YD      ++       L      +  + +P 
Sbjct: 79  PEMQRKRISLFQSSLVYRDKR----FSGYDAATVIEVIEHLDENRLQAFEKVLFEFTRPQ 134

Query: 189 AVV 191
            V+
Sbjct: 135 TVI 137

>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54 Length = 254

 Score = 41.3 bits (96), Expect = 1e-04
 Identities = 13/62 (20%), Positives = 24/62 (38%), Gaps = 2/62 (3%)

Query: 73  LFLDYGTGSGILGIA-AIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDR 131
             +D GTG+  +             +  ++D      A +N   NN+    +K+  VP +
Sbjct: 68  RGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLS-DLIKVVKVPQK 126

Query: 132 TF 133
           T 
Sbjct: 127 TL 128

>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp} Length = 215

 Score = 40.6 bits (96), Expect = 1e-04
 Identities = 17/96 (17%), Positives = 30/96 (31%), Gaps = 22/96 (22%)

Query: 74  FLDYGTGSGILGIA-AIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRT 132
            +D GTGSG + ++ A+          D+   A+  A +NA                   
Sbjct: 34  VIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNAERFGA-------------- 79

Query: 133 FTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIAN 168
                   VD    D     I    +   +  +++N
Sbjct: 80  -------VVDWAAADGIEWLIERAERGRPWHAIVSN 108

>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi} Length = 170

 Score = 40.2 bits (94), Expect = 1e-04
 Identities = 13/60 (21%), Positives = 25/60 (41%), Gaps = 2/60 (3%)

Query: 57  TKLCLLLLRRLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALN 116
           T   +  L R     ++ LD GT +G++     K      V  D++ +A++S      + 
Sbjct: 10  TYTLMDALEREGLEMKIVLDLGTSTGVITEQLRK--RNTVVSTDLNIRALESHRGGNLVR 67

>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A* Length = 276

 Score = 40.9 bits (97), Expect = 1e-04
 Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 1/56 (1%)

Query: 64  LRRLIKGGELFLDYGTGSGILGIA-AIKFGAAMSVGADIDPQAIKSAHQNAALNNI 118
           L RL +     LD GTG+G + +A A +      +  D  P A+  A +NA    I
Sbjct: 103 LARLPEQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAI 158

>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis} Length = 410

 Score = 40.9 bits (95), Expect = 2e-04
 Identities = 25/158 (15%), Positives = 51/158 (32%), Gaps = 6/158 (3%)

Query: 33  PPDVQATNIILNPGLAFGSGEHATTKLCLLLLRRLIKGGELFLDYGTGSGILGIAAIKFG 92
           P     +++ +   L+    E ++  +      R I+ G   +D   G GI  IA +   
Sbjct: 59  PQWAGISSLYIPSRLSL---EQSSGAVTSSYKSRFIREGTKVVDLTGGLGIDFIALMSKA 115

Query: 93  AAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMN-ERVDGVVEDLSSH 151
           +   +  + + +   +A  N  L     K + +     + +   +     D +  D +  
Sbjct: 116 SQG-IYIERNDETAVAARHNIPLLLNEGKDVNILTGDFKEYLPLIKTFHPDYIYVDPARR 174

Query: 152 KIRGISQTEKYDVVIANI-LLNPLLQLADHIVSYAKPG 188
                      D     I L   LL     I++   P 
Sbjct: 175 SGADKRVYAIADCEPDLIPLATELLPFCSSILAKLSPM 212

>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A* Length = 392

 Score = 41.0 bits (95), Expect = 2e-04
 Identities = 24/103 (23%), Positives = 37/103 (35%), Gaps = 6/103 (5%)

Query: 26  IVPEWGAPPDVQATNIILNPGLAFGSGEHATTKLCLLLLRRLIKGGELFLDYGTGSGILG 85
           IVPE           +  NP +           L L  L + +       D  + SGI  
Sbjct: 12  IVPEIPKTVSSDMP-VFYNPRMRV---NRDLAVLGLEYLCKKLGRPVKVADPLSASGIRA 67

Query: 86  I-AAIKFGAAMSV-GADIDPQAIKSAHQNAALNNIGPKKMKLH 126
           I   ++          DI  +AI+   +N  LNNI   + ++H
Sbjct: 68  IRFLLETSCVEKAYANDISSKAIEIMKENFKLNNIPEDRYEIH 110

>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} Length = 230

 Score = 40.5 bits (95), Expect = 2e-04
 Identities = 19/80 (23%), Positives = 32/80 (40%), Gaps = 1/80 (1%)

Query: 54  HATTKLCLLLLRRLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNA 113
           H    +   LL+ + K  +  LD G  SG LG A  + G  +  G +  P+A + A +  
Sbjct: 16  HYYNAVNPNLLKHIKKEWKEVLDIGCSSGALGAAIKENGTRV-SGIEAFPEAAEQAKEKL 74

Query: 114 ALNNIGPKKMKLHLVPDRTF 133
               +G  +       +  F
Sbjct: 75  DHVVLGDIETMDMPYEEEQF 94

>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4er3_A* 3sr4_A* Length = 438

 Score = 40.6 bits (94), Expect = 2e-04
 Identities = 24/128 (18%), Positives = 41/128 (32%), Gaps = 18/128 (14%)

Query: 68  IKGGELFLDYGTGSG-ILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLH 126
           +   +LF+D G+G G ++   A         G +      K A           K MK +
Sbjct: 171 MTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFR---KWMKWY 227

Query: 127 LVPDRTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVV-IANILLNPLL--QLADHIVS 183
                 +T            D  S + R   +     V+ + N    P +  QL +   +
Sbjct: 228 GKKHAEYTL--------ERGDFLSEEWR--ERIANTSVIFVNNFAFGPEVDHQLKERFAN 277

Query: 184 YAKPGAVV 191
             K G  +
Sbjct: 278 M-KEGGRI 284

>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31 Length = 433

 Score = 40.6 bits (94), Expect = 2e-04
 Identities = 46/261 (17%), Positives = 78/261 (29%), Gaps = 46/261 (17%)

Query: 1   MGEQCNWIKKTQQSFHPVEVTKGLWIVPEWGAPPDVQATNII--------------LNPG 46
                N   K  +      +   L         P     + +              L   
Sbjct: 159 FVNAINLYNKMIREIPRQRIIDHLE---TIDKIPRSFIHDFLHIVYTRSIHPQANKLKHY 215

Query: 47  LAFGS---GEHATTKLCLLLLRRLIKGGELFLDYGTGSG-ILGIAAIKFGAAMSVGADID 102
            AF +   GE     L  +  +  +K G+ F+D G+G G  +  AA++ G A+S G +I 
Sbjct: 216 KAFSNYVYGELLPNFLSDVYQQCQLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIM 275

Query: 103 PQAIKSAHQNAA-----LNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDLSSHKIRGIS 157
             A                  G +   +     ++F    N RV  ++            
Sbjct: 276 DDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKSFV--DNNRVAELIPQ---------- 323

Query: 158 QTEKYDVVIANILL--NPLLQLADHIVSYAKPGAVVGISGILSEQLPHIINRYSEFLEDI 215
                DV++ N  L    L +  + I+  AK G  +     L      I     E + + 
Sbjct: 324 ----CDVILVNNFLFDEDLNKKVEKILQTAKVGCKIISLKSLRSLTYQINFYNVENIFNR 379

Query: 216 LVSEMDDWT--CVSGKKKRVK 234
           L  +  D     VS      +
Sbjct: 380 LKVQRYDLKEDSVSWTHSGGE 400

>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus} Length = 354

 Score = 40.5 bits (95), Expect = 2e-04
 Identities = 15/62 (24%), Positives = 24/62 (38%), Gaps = 3/62 (4%)

Query: 54  HATTKLCLLLLRRLIKGGELFLDYGTGSGILGI--AAIKFGAAMSVGADIDPQAIKSAHQ 111
                  LL L    + G   LD  TGSG + +  A+     +     D+D + +  A +
Sbjct: 188 TPVLAQALLRLAD-ARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLARE 246

Query: 112 NA 113
            A
Sbjct: 247 AA 248

>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} SCOP: c.66.1.47 PDB: 3k6r_A 3a25_A* 3a26_A* Length = 278

 Score = 40.3 bits (94), Expect = 3e-04
 Identities = 29/171 (16%), Positives = 56/171 (32%), Gaps = 29/171 (16%)

Query: 64  LRRLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKM 123
           + ++ K  EL +D   G G L +    +G A  +  + DP   K   +N  LN +     
Sbjct: 119 MAKVAKPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKV----- 173

Query: 124 KLHLVPDRTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVS 183
                          +R+     D      R        D ++    +    +     +S
Sbjct: 174 --------------EDRMSAYNMD-----NRDFPGENIADRILMG-YVVRTHEFIPKALS 213

Query: 184 YAKPGAVVGISGILSEQLPHIINRYSEFLEDILVSEMDDWTCVSGKKKRVK 234
            AK GA++     + E+L        E  + I   +   +      + ++K
Sbjct: 214 IAKDGAIIHYHNTVPEKLMP--REPFETFKRIT--KEYGYDVEKLNELKIK 260

>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} Length = 950

 Score = 40.6 bits (94), Expect = 3e-04
 Identities = 17/124 (13%), Positives = 40/124 (32%), Gaps = 25/124 (20%)

Query: 75  LDYGTGSGILGIAAIKFGAAMS--VGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRT 132
           +D+G GSG L  + + +  ++   +G DI P+ +  A +               L     
Sbjct: 726 VDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAK--------------MLHVKLN 771

Query: 133 FTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIA-----NILLNPLLQLADHIVSYAKP 187
             A   +        +     R        D+        ++  +   +  + ++S   P
Sbjct: 772 KEACNVKSATLYDGSILEFDSRL----HDVDIGTCLEVIEHMEEDQACEFGEKVLSLFHP 827

Query: 188 GAVV 191
             ++
Sbjct: 828 KLLI 831

>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} Length = 305

 Score = 40.1 bits (93), Expect = 3e-04
 Identities = 28/176 (15%), Positives = 51/176 (28%), Gaps = 33/176 (18%)

Query: 29  EWGAPPDVQATNIILNPGLAFGSGEHATTKLCLLLLRRLIKGGELFLDYGTGSG--ILGI 86
           + G+        +      A  +           L R L  G  +      G    +L +
Sbjct: 78  QPGSGALAPLERVFYERLPAVLATRERHGHFRRALQRHLRPGCVV-ASVPCGWMSELLAL 136

Query: 87  AAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVE 146
                     VG D DP+A+  A + AA +                    +  ++    +
Sbjct: 137 DYSACPGVQLVGIDYDPEALDGATRLAAGHA-------------------LAGQITLHRQ 177

Query: 147 DLSSHKIRGISQTEKYDVVIANILLN------PLLQLADHIVSYAKPGAVVGISGI 196
           D        +   E YD++ +N L         + +L        KPG  +  S +
Sbjct: 178 D-----AWKLDTREGYDLLTSNGLNIYEPDDARVTELYRRFWQALKPGGALVTSFL 228

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} Length = 375

 Score = 40.3 bits (94), Expect = 3e-04
 Identities = 15/86 (17%), Positives = 32/86 (37%), Gaps = 3/86 (3%)

Query: 62  LLLRRLIKG-GELFLDYGTGSGILGIAAIKFGAAMSVGA-DIDPQAIKSAHQNAALNNIG 119
             ++ L +      +D G G+G++G+  +       V   D  P A+ S+  N   N   
Sbjct: 213 FFMQHLPENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPE 272

Query: 120 PKKMKLHLVPDRTFTASMNERVDGVV 145
               +   + +   +     R + V+
Sbjct: 273 ALD-RCEFMINNALSGVEPFRFNAVL 297

>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A* Length = 336

 Score = 40.2 bits (94), Expect = 3e-04
 Identities = 14/58 (24%), Positives = 26/58 (44%), Gaps = 2/58 (3%)

Query: 64  LRRLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPK 121
           + + +   ++ +D   G G   IA        ++  DI+P AI+   +N  LN +  K
Sbjct: 189 IMKKVSLNDVVVDMFAGVGPFSIACKNAKKIYAI--DINPHAIELLKKNIKLNKLEHK 244

>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 Length = 227

 Score = 39.9 bits (93), Expect = 3e-04
 Identities = 15/52 (28%), Positives = 21/52 (40%), Gaps = 1/52 (1%)

Query: 63  LLRRLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAA 114
           LL + +K     LD   G G        +G  + VG DI    I+ A + A 
Sbjct: 31  LLMKYMKKRGKVLDLACGVGGFSFLLEDYGFEV-VGVDISEDMIRKAREYAK 81

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} Length = 197

 Score = 39.1 bits (91), Expect = 4e-04
 Identities = 21/142 (14%), Positives = 47/142 (33%), Gaps = 12/142 (8%)

Query: 54  HATTKLCLLLLRRLIKGGELFLDYGTGSGIL-GIAAIKFGAAMSV-GADIDPQAIKSAHQ 111
             +       ++  +K G+  +D   G+G      A   G    V G DI  +AI +  +
Sbjct: 6   KNSLGQSHDYIKMFVKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTK 65

Query: 112 NAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILL 171
                N+   ++ L     +     ++  V  V+ +L        S + + +  I  +  
Sbjct: 66  KLTDLNL-IDRVTLIKDGHQNMDKYIDCPVKAVMFNLGYLPSGDHSISTRPETTIQAL-- 122

Query: 172 NPLLQLADHIVSYAKPGAVVGI 193
                     +     G ++ +
Sbjct: 123 -------SKAMELLVTGGIITV 137

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* Length = 185

 Score = 39.1 bits (91), Expect = 4e-04
 Identities = 14/93 (15%), Positives = 31/93 (33%), Gaps = 3/93 (3%)

Query: 56  TTKLCLLLLRRLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAAL 115
              +    L  ++    + +D   G+G    A +   +      D+  QA+    Q  + 
Sbjct: 8   PIHMSHDFLAEVLDDESIVVDATMGNGND-TAFLAGLSKKVYAFDVQEQALGKTSQRLSD 66

Query: 116 NNIGPKKMKLHLVPDRTFTASMNERVDGVVEDL 148
              G +  +L L         + E +   + +L
Sbjct: 67  L--GIENTELILDGHENLDHYVREPIRAAIFNL 97

>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae} Length = 281

 Score = 39.4 bits (91), Expect = 5e-04
 Identities = 27/165 (16%), Positives = 51/165 (30%), Gaps = 20/165 (12%)

Query: 61  LLLLRRLIKGGELF-----LDYGTGSGILGIAAIKFGAAMSVGADI-DPQAIKSAHQNAA 114
             L   L    EL       + G G+G++ I A   GA   V  D  DP+ + S   N  
Sbjct: 65  RALADTLCWQPELIAGKTVCELGAGAGLVSIVAFLAGADQVVATDYPDPEILNSLESNIR 124

Query: 115 LNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIA------N 168
            +                     + +V       S   ++  +  +++ VV+       +
Sbjct: 125 EH--------TANSCSSETVKRASPKVVPYRWGDSPDSLQRCTGLQRFQVVLLADLLSFH 176

Query: 169 ILLNPLLQLADHIVSYAKPGAVVGISGILSEQLPHIINRYSEFLE 213
              + LL+    +++              +   PH+  R   F  
Sbjct: 177 QAHDALLRSVKMLLALPANDPTAVALVTFTHHRPHLAERDLAFFR 221

>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii} Length = 183

 Score = 38.7 bits (91), Expect = 5e-04
 Identities = 16/76 (21%), Positives = 29/76 (38%), Gaps = 13/76 (17%)

Query: 68  IKGGELFLDYGTGSGILGI-AAIKFGAAMSVGADIDPQAIKSAHQNAALNNIG------- 119
           +   ++ +D G GSG + +  A +     ++  D    AI+   QN A  NI        
Sbjct: 33  LNKDDVVVDVGCGSGGMTVEIAKRCKFVYAI--DYLDGAIEVTKQNLAKFNIKNCQIIKG 90

Query: 120 --PKKMKLHLVPDRTF 133
                +   L  ++ F
Sbjct: 91  RAEDVLD-KLEFNKAF 105

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.70A {Bacillus thuringiensis} Length = 242

 Score = 39.1 bits (91), Expect = 5e-04
 Identities = 12/66 (18%), Positives = 22/66 (33%), Gaps = 1/66 (1%)

Query: 53  EHATTKLCLLLLRRLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQN 112
           +  +    +    + +K     LD G G G       + G    VG DI    I+   + 
Sbjct: 36  DSGSRSTIIPFFEQYVKKEAEVLDVGCGDGYGTYKLSRTGYKA-VGVDISEVMIQKGKER 94

Query: 113 AALNNI 118
               ++
Sbjct: 95  GEGPDL 100

>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A* Length = 382

 Score = 39.3 bits (92), Expect = 7e-04
 Identities = 16/61 (26%), Positives = 27/61 (44%), Gaps = 3/61 (4%)

Query: 64  LRRLIKG--GELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPK 121
            R  ++   GE  LD  + +G   +     G    V  D   +A++ A +NA LN +G  
Sbjct: 201 NRLYMERFRGERALDVFSYAGGFALHLAL-GFREVVAVDSSAEALRRAEENARLNGLGNV 259

Query: 122 K 122
           +
Sbjct: 260 R 260

>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} Length = 170

 Score = 38.1 bits (89), Expect = 7e-04
 Identities = 13/72 (18%), Positives = 28/72 (38%), Gaps = 5/72 (6%)

Query: 63  LLRRL-IKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPK 121
            L  +      + +DYG G+G      ++F   +    DI+  A+K   +    +++   
Sbjct: 9   YLPNIFEGKKGVIVDYGCGNGFYCKYLLEFATKL-YCIDINVIALKEVKEK--FDSVITL 65

Query: 122 KMKLHLVPDRTF 133
                + PD + 
Sbjct: 66  SDPKEI-PDNSV 76

>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A Length = 348

 Score = 38.8 bits (90), Expect = 8e-04
 Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 4/71 (5%)

Query: 75  LDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFT 134
           LD G GSGIL   A + GA      +    A   A      NN+     ++ ++P +   
Sbjct: 55  LDVGCGSGILSFFAAQAGARKIYAVEASTMAQH-AEVLVKSNNLTD---RIVVIPGKVEE 110

Query: 135 ASMNERVDGVV 145
            S+ E+VD ++
Sbjct: 111 VSLPEQVDIII 121

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	237
2nxc_A	254	L11 mtase, ribosomal protein L11 methyltransferase	100.0
3grz_A	205	L11 mtase, ribosomal protein L11 methyltransferase	99.96
3dmg_A	381	Probable ribosomal RNA small subunit methyltransf;	99.79
4gek_A	261	TRNA (CMO5U34)-methyltransferase; structural genom	99.76
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	99.76
3p9n_A	189	Possible methyltransferase (methylase); RV2966C, a	99.76
1dus_A	194	MJ0882; hypothetical protein, methanococcus jannas	99.76
3lpm_A	259	Putative methyltransferase; structural genomics, p	99.75
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	99.75
3evz_A	230	Methyltransferase; NYSGXRC, NEW YORK SGX research	99.75
2ift_A	201	Putative methylase HI0767; NESG, Y767_haein, struc	99.74
3kr9_A	225	SAM-dependent methyltransferase; class I rossmann-	99.74
3e05_A	204	Precorrin-6Y C5,15-methyltransferase (decarboxyla;	99.73
3lec_A	230	NADB-rossmann superfamily protein; PSI, MCSG, stru	99.73
2fpo_A	202	Methylase YHHF; structural genomics, putative meth	99.73
3njr_A	204	Precorrin-6Y methylase; methyltransferase, decarbo	99.73
2b3t_A	276	Protein methyltransferase HEMK; translation termin	99.73
3c0k_A	396	UPF0064 protein YCCW; PUA domain, adoMet dependent	99.72
2frn_A	278	Hypothetical protein PH0793; structural genomics,	99.72
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	99.72
4dmg_A	393	Putative uncharacterized protein TTHA1493; rRNA, m	99.72
3gnl_A	244	Uncharacterized protein, DUF633, LMOF2365_1472; st	99.72
2b78_A	385	Hypothetical protein SMU.776; structure genomics,	99.72
3dlc_A	219	Putative S-adenosyl-L-methionine-dependent methylt	99.72
2igt_A	332	SAM dependent methyltransferase; alpha-beta sandwi	99.72
2esr_A	177	Methyltransferase; structural genomics, hypothetic	99.72
3a27_A	272	TYW2, uncharacterized protein MJ1557; wybutosine m	99.71
2a14_A	263	Indolethylamine N-methyltransferase; SGC,INMT, str	99.71
2as0_A	396	Hypothetical protein PH1915; RNA methyltransferase	99.71
1nv8_A	284	HEMK protein; class I adoMet-dependent methyltrans	99.7
2fhp_A	187	Methylase, putative; alpha-beta-alpha sandwich, st	99.7
4dzr_A	215	Protein-(glutamine-N5) methyltransferase, release	99.7
1wxx_A	382	TT1595, hypothetical protein TTHA1280; thermus the	99.69
3dh0_A	219	SAM dependent methyltransferase; cystal structure,	99.69
3hem_A	302	Cyclopropane-fatty-acyl-phospholipid synthase 2; p	99.69
3f4k_A	257	Putative methyltransferase; structural genomics, P	99.68
2pjd_A	343	Ribosomal RNA small subunit methyltransferase C; g	99.68
1yzh_A	214	TRNA (guanine-N(7)-)-methyltransferase; alpha-beta	99.68
3e23_A	211	Uncharacterized protein RPA2492; alpha-beta protei	99.68
3dxy_A	218	TRNA (guanine-N(7)-)-methyltransferase; rossmann f	99.68
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	99.68
1uwv_A	433	23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m	99.67
3duw_A	223	OMT, O-methyltransferase, putative; alternating of	99.67
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	99.67
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	99.67
1ws6_A	171	Methyltransferase; structural genomics, riken stru	99.67
1l3i_A	192	Precorrin-6Y methyltransferase/putative decarboxyl	99.67
3ocj_A	305	Putative exported protein; structural genomics, PS	99.67
3k6r_A	278	Putative transferase PH0793; structural genomics,	99.67
3tfw_A	248	Putative O-methyltransferase; PSI-biology, nysgrc,	99.66
2yxd_A	183	Probable cobalt-precorrin-6Y C(15)-methyltransfer	99.66
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	99.66
3q87_B	170	N6 adenine specific DNA methylase; SAM-methyltrans	99.66
1xdz_A	240	Methyltransferase GIDB; MCSG, protein structure in	99.66
3u81_A	221	Catechol O-methyltransferase; neurotransmitter deg	99.66
2ozv_A	260	Hypothetical protein ATU0636; structural genomics,	99.66
3r3h_A	242	O-methyltransferase, SAM-dependent; structural gen	99.66
2xvm_A	199	Tellurite resistance protein TEHB; antibiotic resi	99.65
2jjq_A	425	Uncharacterized RNA methyltransferase pyrab10780;	99.65
1pjz_A	203	Thiopurine S-methyltransferase; polymorphism, S-ad	99.65
2fca_A	213	TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac	99.65
3sm3_A	235	SAM-dependent methyltransferases; NESG, structural	99.64
2yx1_A	336	Hypothetical protein MJ0883; methyl transferase, t	99.64
3tr6_A	225	O-methyltransferase; cellular processes; HET: SAH;	99.64
3adn_A	294	Spermidine synthase; aminopropyltransferase, polya	99.64
1xxl_A	239	YCGJ protein; structural genomics, protein structu	99.64
2ex4_A	241	Adrenal gland protein AD-003; methyltransferase, s	99.64
3dr5_A	221	Putative O-methyltransferase; Q8NRD3, CGL1119, PF0	99.64
3ntv_A	232	MW1564 protein; rossmann fold, putative methyltran	99.64
1vl5_A	260	Unknown conserved protein BH2331; putative methylt	99.63
2gb4_A	252	Thiopurine S-methyltransferase; 18204406, thiopuri	99.63
1fbn_A	230	MJ fibrillarin homologue; MJ proteins, ribosomal R	99.63
3orh_A	236	Guanidinoacetate N-methyltransferase; structura ge	99.63
3dtn_A	234	Putative methyltransferase MM_2633; structural gen	99.63
1jsx_A	207	Glucose-inhibited division protein B; methyltransf	99.62
3cgg_A	195	SAM-dependent methyltransferase; NP_600671.1, meth	99.62
4htf_A	285	S-adenosylmethionine-dependent methyltransferase;	99.62
3lcc_A	235	Putative methyl chloride transferase; halide methy	99.62
1ve3_A	227	Hypothetical protein PH0226; dimer, riken structur	99.62
2pxx_A	215	Uncharacterized protein MGC2408; structural genomi	99.62
3mb5_A	255	SAM-dependent methyltransferase; RNA methyltransfe	99.62
3pfg_A	263	N-methyltransferase; N,N-dimethyltransferase, SAM	99.62
3jwh_A	217	HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena	99.61
2vdw_A	302	Vaccinia virus capping enzyme D1 subunit; nucleoti	99.61
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	99.61
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	99.61
1y8c_A	246	S-adenosylmethionine-dependent methyltransferase;	99.61
2kw5_A	202	SLR1183 protein; structural genomics, northeast st	99.61
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	99.61
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	99.61
3bzb_A	281	Uncharacterized protein; RED ALGA, protein structu	99.61
3m70_A	286	Tellurite resistance protein TEHB homolog; structu	99.61
3g5l_A	253	Putative S-adenosylmethionine dependent methyltran	99.61
3jwg_A	219	HEN1, methyltransferase type 12; 1.90A {Clostridiu	99.6
1iy9_A	275	Spermidine synthase; rossmann fold, structural gen	99.6
3bt7_A	369	TRNA (uracil-5-)-methyltransferase; methyluridine,	99.6
1inl_A	296	Spermidine synthase; beta-barrel, rossman fold, st	99.6
2gpy_A	233	O-methyltransferase; structural genomics, PSI, pro	99.6
3g89_A	249	Ribosomal RNA small subunit methyltransferase G; 1	99.6
1zx0_A	236	Guanidinoacetate N-methyltransferase; structural g	99.6
2i62_A	265	Nicotinamide N-methyltransferase; structural genom	99.6
3h2b_A	203	SAM-dependent methyltransferase; alpha-beta protei	99.6
1nt2_A	210	Fibrillarin-like PRE-rRNA processing protein; adeM	99.6
1kpg_A	287	CFA synthase;, cyclopropane-fatty-acyl-phospholipi	99.6
1yb2_A	275	Hypothetical protein TA0852; structural genomics,	99.6
3i9f_A	170	Putative type 11 methyltransferase; structural gen	99.6
2o57_A	297	Putative sarcosine dimethylglycine methyltransfera	99.6
2g72_A	289	Phenylethanolamine N-methyltransferase; HET: SAM F	99.6
4hg2_A	257	Methyltransferase type 11; structural genomics, PS	99.6
3vc1_A	312	Geranyl diphosphate 2-C-methyltransferase; rossman	99.6
1o9g_A	250	RRNA methyltransferase; antibiotic resistance, Se-	99.59
3ofk_A	216	Nodulation protein S; NODS, N-methyltransferase, S	99.59
3l8d_A	242	Methyltransferase; structural genomics, PSI, nysgr	99.59
3c3p_A	210	Methyltransferase; NP_951602.1, structural genomic	99.59
3g07_A	292	7SK snRNA methylphosphate capping enzyme; structur	99.59
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	99.59
1ri5_A	298	MRNA capping enzyme; methyltransferase, M7G, messe	99.59
1xtp_A	254	LMAJ004091AAA; SGPP, structural genomics, PSI, pro	99.59
1ixk_A	315	Methyltransferase; open beta sheet; 1.90A {Pyrococ	99.59
3lbf_A	210	Protein-L-isoaspartate O-methyltransferase; modifi	99.59
3fzg_A	200	16S rRNA methylase; methyltransferase, plasmid, tr	99.58
4fsd_A	383	Arsenic methyltransferase; rossmann fold; 1.75A {C	99.58
3g5t_A	299	Trans-aconitate 3-methyltransferase; structural ge	99.57
3ckk_A	235	TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-	99.57
3bwc_A	304	Spermidine synthase; SAM, SGPP, structura genomics	99.57
2ipx_A	233	RRNA 2'-O-methyltransferase fibrillarin; FBL, stru	99.57
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	99.57
3gdh_A	241	Trimethylguanosine synthase homolog; M7G, CAP, dim	99.57
4hc4_A	376	Protein arginine N-methyltransferase 6; HRMT1L6, S	99.56
3tma_A	354	Methyltransferase; thump domain; 2.05A {Thermus th	99.56
2fk8_A	318	Methoxy mycolic acid synthase 4; S-adenosylmethion	99.56
1mjf_A	281	Spermidine synthase; spermidine synthetase, struct	99.56
3d2l_A	243	SAM-dependent methyltransferase; ZP_00538691.1, st	99.56
1g8a_A	227	Fibrillarin-like PRE-rRNA processing protein; rRNA	99.56
2b25_A	336	Hypothetical protein; structural genomics, methyl	99.56
3ajd_A	274	Putative methyltransferase MJ0026; tRNA, M5C, ross	99.56
2p7i_A	250	Hypothetical protein; putative methyltransferase,	99.56
3r0q_C	376	Probable protein arginine N-methyltransferase 4.2;	99.56
2pwy_A	258	TRNA (adenine-N(1)-)-methyltransferase; mtase, ado	99.56
1uir_A	314	Polyamine aminopropyltransferase; spermidien synth	99.56
2vdv_E	246	TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl	99.56
3c3y_A	237	Pfomt, O-methyltransferase; plant secondary metabo	99.55
1sui_A	247	Caffeoyl-COA O-methyltransferase; rossmann fold, p	99.55
3gjy_A	317	Spermidine synthase; APC62791, structural genomics	99.55
2p8j_A	209	S-adenosylmethionine-dependent methyltransferase;	99.55
2yvl_A	248	TRMI protein, hypothetical protein; tRNA, methyltr	99.55
3id6_C	232	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	99.55
2yqz_A	263	Hypothetical protein TTHA0223; RNA methyltransfera	99.55
1o54_A	277	SAM-dependent O-methyltransferase; TM0748, structu	99.55
1dl5_A	317	Protein-L-isoaspartate O-methyltransferase; isoasp	99.55
3bgv_A	313	MRNA CAP guanine-N7 methyltransferase; alternative	99.55
2hnk_A	239	SAM-dependent O-methyltransferase; modified rossma	99.55
3ggd_A	245	SAM-dependent methyltransferase; YP_325210.1, stru	99.54
2pt6_A	321	Spermidine synthase; transferase, structural genom	99.54
3cbg_A	232	O-methyltransferase; cyanobacterium; HET: SAH FER	99.54
1i9g_A	280	Hypothetical protein RV2118C; mtase, adoMet, cryst	99.54
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	99.54
4df3_A	233	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	99.54
3dou_A	191	Ribosomal RNA large subunit methyltransferase J; c	99.54
2avd_A	229	Catechol-O-methyltransferase; structural genomics,	99.54
3tm4_A	373	TRNA (guanine N2-)-methyltransferase TRM14; rossma	99.54
1wzn_A	252	SAM-dependent methyltransferase; structural genomi	99.54
3thr_A	293	Glycine N-methyltransferase; GNMT, folate, methylt	99.54
3q7e_A	349	Protein arginine N-methyltransferase 1; HET: SAH;	99.53
3iv6_A	261	Putative Zn-dependent alcohol dehydrogenase; alpha	99.53
2pbf_A	227	Protein-L-isoaspartate O-methyltransferase beta-A	99.53
2fyt_A	340	Protein arginine N-methyltransferase 3; structural	99.53
3uwp_A	438	Histone-lysine N-methyltransferase, H3 lysine-79;	99.53
3dli_A	240	Methyltransferase; PSI-II, NYSGXRC, structural gen	99.53
1jg1_A	235	PIMT;, protein-L-isoaspartate O-methyltransferase;	99.52
2b2c_A	314	Spermidine synthase; beta-alpha, transferase; 2.50	99.52
2gs9_A	211	Hypothetical protein TT1324; methyl transferase, s	99.52
3gu3_A	284	Methyltransferase; alpha-beta protein, structural	99.52
1g6q_1	328	HnRNP arginine N-methyltransferase; SAM-binding do	99.52
2yxl_A	450	PH0851 protein, 450AA long hypothetical FMU protei	99.52
2p35_A	259	Trans-aconitate 2-methyltransferase; SAM dependent	99.52
3g2m_A	299	PCZA361.24; SAM-dependent methyltransferase, glyco	99.51
3b3j_A	480	Histone-arginine methyltransferase CARM1; protein	99.51
3ccf_A	279	Cyclopropane-fatty-acyl-phospholipid synthase; YP_	99.51
2yxe_A	215	Protein-L-isoaspartate O-methyltransferase; rossma	99.51
2qm3_A	373	Predicted methyltransferase; putative methyltransf	99.51
1wy7_A	207	Hypothetical protein PH1948; seven-stranded beta s	99.51
3bxo_A	239	N,N-dimethyltransferase; desosamine, sugar, carboh	99.51
2o07_A	304	Spermidine synthase; structural genomics, structur	99.5
2h00_A	254	Methyltransferase 10 domain containing protein; st	99.5
2y1w_A	348	Histone-arginine methyltransferase CARM1; histone	99.5
1vbf_A	231	231AA long hypothetical protein-L-isoaspartate O-	99.5
1xj5_A	334	Spermidine synthase 1; structural genomics, protei	99.5
3m33_A	226	Uncharacterized protein; structural genomics, PSI-	99.5
3axs_A	392	Probable N(2),N(2)-dimethylguanosine tRNA methylt	99.5
1i1n_A	226	Protein-L-isoaspartate O-methyltransferase; S-aden	99.49
3gwz_A	369	MMCR; methyltransferase, mitomycin, S-adenosyl met	99.49
1ej0_A	180	FTSJ; methyltransferase, adoMet, adenosyl methioni	99.49
3p2e_A	225	16S rRNA methylase; methyltransferase, transferase	99.49
2dul_A	378	N(2),N(2)-dimethylguanosine tRNA methyltransferas;	99.48
2plw_A	201	Ribosomal RNA methyltransferase, putative; malaria	99.48
2frx_A	479	Hypothetical protein YEBU; rossmann-type S-adenosy	99.48
3m4x_A	456	NOL1/NOP2/SUN family protein; mtase domain, PUA do	99.48
1qzz_A	374	RDMB, aclacinomycin-10-hydroxylase; anthracycline,	99.48
1r18_A	227	Protein-L-isoaspartate(D-aspartate)-O-methyltrans;	99.47
3i53_A	332	O-methyltransferase; CO-complex, rossmann-like fol	99.47
2avn_A	260	Ubiquinone/menaquinone biosynthesis methyltransfe	99.47
2r3s_A	335	Uncharacterized protein; methyltransferase domain,	99.47
2i7c_A	283	Spermidine synthase; transferase, structural genom	99.47
3mcz_A	352	O-methyltransferase; adomet_mtases, S-adenosylmeth	99.47
1ne2_A	200	Hypothetical protein TA1320; structural genomics,	99.47
3htx_A	950	HEN1; HEN1, small RNA methyltransferase, protein-R	99.47
1u2z_A	433	Histone-lysine N-methyltransferase, H3 lysine-79 s	99.46
1sqg_A	429	SUN protein, FMU protein; rossmann-fold, mixed bet	99.46
3bkx_A	275	SAM-dependent methyltransferase; YP_807781.1, cycl	99.46
3e8s_A	227	Putative SAM dependent methyltransferase; NP_74470	99.45
2f8l_A	344	Hypothetical protein LMO1582; structural genomics,	99.45
1tw3_A	360	COMT, carminomycin 4-O-methyltransferase; anthracy	99.45
3ege_A	261	Putative methyltransferase from antibiotic biosyn	99.45
3m6w_A	464	RRNA methylase; rRNA methyltransferase, 5-methylcy	99.45
3lcv_B	281	Sisomicin-gentamicin resistance methylase SGM; ant	99.45
1x19_A	359	CRTF-related protein; methyltransferase, bacterioc	99.43
3ldg_A	384	Putative uncharacterized protein SMU.472; YPSC, me	99.43
1vlm_A	219	SAM-dependent methyltransferase; possible histamin	99.43
3frh_A	253	16S rRNA methylase; methyltransferase domain, heli	99.43
3ldu_A	385	Putative methylase; structural genomics, PSI-2, pr	99.42
3k0b_A	393	Predicted N6-adenine-specific DNA methylase; methy	99.42
2cmg_A	262	Spermidine synthase; transferase, putrescine amino	99.42
3mq2_A	218	16S rRNA methyltransferase; methyltranferase, ribo	99.41
3dp7_A	363	SAM-dependent methyltransferase; structural genomi	99.41
3cc8_A	230	Putative methyltransferase; structural genomics, j	99.4
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	99.4
2nyu_A	196	Putative ribosomal RNA methyltransferase 2; SAM, s	99.4
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	99.4
3hp7_A	291	Hemolysin, putative; structural genomics, APC64019	99.39
2bm8_A	236	Cephalosporin hydroxylase CMCI; cephamycin biosynt	99.39
1zq9_A	285	Probable dimethyladenosine transferase; SGC, struc	99.39
2ip2_A	334	Probable phenazine-specific methyltransferase; pyo	99.38
2zfu_A	215	Nucleomethylin, cerebral protein 1; nucleolar prot	99.37
2okc_A	445	Type I restriction enzyme stysji M protein; NP_813	99.37
2aot_A	292	HMT, histamine N-methyltransferase; classic methyl	99.37
2qe6_A	274	Uncharacterized protein TFU_2867; putative methylt	99.36
2h1r_A	299	Dimethyladenosine transferase, putative; SGC toron	99.35
3opn_A	232	Putative hemolysin; structural genomics, PSI-2, pr	99.35
3gru_A	295	Dimethyladenosine transferase; rossman fold, ribos	99.33
3tqs_A	255	Ribosomal RNA small subunit methyltransferase A; p	99.32
2qfm_A	364	Spermine synthase; spermidine aminopropyltransfera	99.32
2b9e_A	309	NOL1/NOP2/SUN domain family, member 5 isoform 2; m	99.32
1af7_A	274	Chemotaxis receptor methyltransferase CHER; chemot	99.31
2wa2_A	276	Non-structural protein 5; transferase, S-adenosyl-	99.31
2oxt_A	265	Nucleoside-2'-O-methyltransferase; flavivirus, vir	99.3
2ih2_A	421	Modification methylase TAQI; DNA, DNA methyltransf	99.28
4e2x_A	416	TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s	99.28
1qam_A	244	ERMC' methyltransferase; rRNA methyltransferase ER	99.27
2xyq_A	290	Putative 2'-O-methyl transferase; transferase-vira	99.26
2p41_A	305	Type II methyltransferase; vizier, viral enzymes i	99.25
4a6d_A	353	Hydroxyindole O-methyltransferase; melatonin, circ	99.22
3sso_A	419	Methyltransferase; macrolide, natural product, ros	99.22
3fut_A	271	Dimethyladenosine transferase; methyltransferase,	99.21
3giw_A	277	Protein of unknown function DUF574; rossmann-fold	99.21
3lst_A	348	CALO1 methyltransferase; calicheamicin, enediyne,	99.21
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	99.21
3ftd_A	249	Dimethyladenosine transferase; KSGA, rossmann-like	99.19
3ll7_A	410	Putative methyltransferase; methytransferase, stru	99.16
3cvo_A	202	Methyltransferase-like protein of unknown functio;	99.15
2ar0_A	541	M.ecoki, type I restriction enzyme ecoki M protein	99.15
1fp1_D	372	Isoliquiritigenin 2'-O-methyltransferase; protein-	99.15
3uzu_A	279	Ribosomal RNA small subunit methyltransferase A; s	99.13
1yub_A	245	Ermam, rRNA methyltransferase; MLS antibiotics; NM	99.12
3o4f_A	294	Spermidine synthase; aminopropyltransferase, polya	99.11
3lkd_A	542	Type I restriction-modification system methyltrans	99.1
2r6z_A	258	UPF0341 protein in RSP 3' region; alpha-beta prote	99.09
3s1s_A	878	Restriction endonuclease bpusi; PD--(D/E)XK cataly	99.09
3khk_A	544	Type I restriction-modification system methylation	99.08
3reo_A	368	(ISO)eugenol O-methyltransferase; directed evoluti	99.08
1fp2_A	352	Isoflavone O-methyltransferase; protein-product co	99.04
3p9c_A	364	Caffeic acid O-methyltransferase; S-adenosylmethio	99.04
2ld4_A	176	Anamorsin; methyltransferase-like fold, alpha/beta	99.02
1zg3_A	358	Isoflavanone 4'-O-methyltransferase; rossman fold,	99.02
4fzv_A	359	Putative methyltransferase NSUN4; mterf fold, meth	98.96
1m6y_A	301	S-adenosyl-methyltransferase MRAW; SAM-dependent m	98.96
3c6k_A	381	Spermine synthase; spermidine aminopropyltransfera	98.94
4gqb_A	637	Protein arginine N-methyltransferase 5; TIM barrel	98.93
2wk1_A	282	NOVP; transferase, O-methyltransferase, novobiocin	98.9
1qyr_A	252	KSGA, high level kasugamycin resistance protein, S	98.88
3ufb_A	530	Type I restriction-modification system methyltran	98.81
3ua3_A	745	Protein arginine N-methyltransferase 5; TIM-barrel	98.77
2oyr_A	258	UPF0341 protein YHIQ; alpha-beta protein, structur	98.76
3evf_A	277	RNA-directed RNA polymerase NS5; NS5 methyltransfe	98.74
2k4m_A	153	TR8_protein, UPF0146 protein MTH_1000; alpha+beta,	98.62
3gcz_A	282	Polyprotein; flavivirus, RNA capping, methyltransf	98.59
2qy6_A	257	UPF0209 protein YFCK; structural genomics, unknown	98.57
3eld_A	300	Methyltransferase; flavivirus, RNA capping, guanyl	98.45
2px2_A	269	Genome polyprotein [contains: capsid protein C (co	98.44
2oo3_A	283	Protein involved in catabolism of external DNA; st	98.36
4auk_A	375	Ribosomal RNA large subunit methyltransferase M; Y	98.34
3lkz_A	321	Non-structural protein 5; flavivirus, methyltransf	98.22
3p8z_A	267	Mtase, non-structural protein 5; methyltransferase	98.21
1wg8_A	285	Predicted S-adenosylmethionine-dependent methyltra	98.19
2zig_A	297	TTHA0409, putative modification methylase; methylt	98.17
3tka_A	347	Ribosomal RNA small subunit methyltransferase H; H	98.15
3r24_A	344	NSP16, 2'-O-methyl transferase; methyltransferase,	98.06
3b5i_A	374	S-adenosyl-L-methionine:salicylic acid carboxyl me	98.06
1g60_A	260	Adenine-specific methyltransferase MBOIIA; structu	98.05
2efj_A	384	3,7-dimethylxanthine methyltransferase; SAM-depend	97.96
1i4w_A	353	Mitochondrial replication protein MTF1; mitochondr	97.86
3g7u_A	376	Cytosine-specific methyltransferase; DNA-binding,	97.72
1g55_A	343	DNA cytosine methyltransferase DNMT2; human DNA me	97.53
2c7p_A	327	Modification methylase HHAI; DNA methyltransferase	97.39
1m6e_X	359	S-adenosyl-L-methionnine:salicylic acid carboxyl m	97.34
1boo_A	323	Protein (N-4 cytosine-specific methyltransferase P	97.19
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	97.15
3ubt_Y	331	Modification methylase HAEIII; protein-DNA complex	97.13
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	97.09
3ip1_A	404	Alcohol dehydrogenase, zinc-containing; structural	96.98
3fpc_A	352	NADP-dependent alcohol dehydrogenase; oxydoreducta	96.95
1eg2_A	319	Modification methylase RSRI; rossmann fold, exocyc	96.95
2dph_A	398	Formaldehyde dismutase; dismutation of aldehydes,	96.86
3m6i_A	363	L-arabinitol 4-dehydrogenase; medium chain dehydro	96.84
3tos_A	257	CALS11; methyltransferase, calicheamicin, structur	96.74
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	96.7
4a2c_A	346	Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc	96.69
2qrv_A	295	DNA (cytosine-5)-methyltransferase 3A; DNA methylt	96.69
3jv7_A	345	ADH-A; dehydrogenase, nucleotide binding, rossmann	96.65
4dvj_A	363	Putative zinc-dependent alcohol dehydrogenase Pro;	96.6
1kol_A	398	Formaldehyde dehydrogenase; oxidoreductase; HET: N	96.59
1pqw_A	198	Polyketide synthase; rossmann fold, dimer, structu	96.49
3uko_A	378	Alcohol dehydrogenase class-3; alcohol dehydrogena	96.46
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	96.41
2py6_A	409	Methyltransferase FKBM; YP_546752.1, structural ge	96.4
3qv2_A	327	5-cytosine DNA methyltransferase; DNMT2, ehmeth; H	96.39
4h0n_A	333	DNMT2; SAH binding, transferase; HET: SAH; 2.71A {	96.37
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	96.29
1p0f_A	373	NADP-dependent alcohol dehydrogenase; ADH topology	96.27
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	96.23
3gms_A	340	Putative NADPH:quinone reductase; structural genom	96.18
2fzw_A	373	Alcohol dehydrogenase class III CHI chain; S-nitro	96.14
4eez_A	348	Alcohol dehydrogenase 1; site-saturation mutagenes	96.12
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	96.08
1cdo_A	374	Alcohol dehydrogenase; oxidoreductase, oxidoreduct	96.06
2jhf_A	374	Alcohol dehydrogenase E chain; oxidoreductase, met	96.04
1vj0_A	380	Alcohol dehydrogenase, zinc-containing; TM0436, st	96.01
1e3i_A	376	Alcohol dehydrogenase, class II; HET: NAD; 2.08A {	95.96
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	95.92
3qwb_A	334	Probable quinone oxidoreductase; rossmann fold, qu	95.81
3me5_A	482	Cytosine-specific methyltransferase; structural ge	95.79
1v3u_A	333	Leukotriene B4 12- hydroxydehydrogenase/prostaglan	95.77
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	95.76
3jyn_A	325	Quinone oxidoreductase; rossmann fold, protein-NAD	95.74
2zig_A	297	TTHA0409, putative modification methylase; methylt	95.67
3fbg_A	346	Putative arginate lyase; structural genomics, unkn	95.64
2uyo_A	310	Hypothetical protein ML2640; putative methyltransf	95.63
2vz8_A	2512	Fatty acid synthase; transferase, phosphopantethei	95.63
3vyw_A	308	MNMC2; tRNA wobble uridine, modification enzyme, g	95.63
2eih_A	343	Alcohol dehydrogenase; zinc ION binding protein, s	95.58
4eye_A	342	Probable oxidoreductase; structural genomics, niai	95.57
4b7c_A	336	Probable oxidoreductase; NADP cofactor, rossmann f	95.57
1uuf_A	369	YAHK, zinc-type alcohol dehydrogenase-like protein	95.53
2h6e_A	344	ADH-4, D-arabinose 1-dehydrogenase; rossman fold,	95.5
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	95.48
1qor_A	327	Quinone oxidoreductase; HET: NAP; 2.20A {Escherich	95.47
2hcy_A	347	Alcohol dehydrogenase 1; tetramer of asymmetric di	95.41
1rjw_A	339	ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD	95.41
1rjd_A	334	PPM1P, carboxy methyl transferase for protein phos	95.36
2b5w_A	357	Glucose dehydrogenase; nucleotide binding motif, o	95.28
2j3h_A	345	NADP-dependent oxidoreductase P1; double bond redu	95.26
1wly_A	333	CAAR, 2-haloacrylate reductase; NADPH-dependent ox	95.11
1yb5_A	351	Quinone oxidoreductase; medium-chain dehydrogenase	95.07
2c0c_A	362	Zinc binding alcohol dehydrogenase, domain contain	95.06
4dup_A	353	Quinone oxidoreductase; PSI-biology, structural ge	95.03
2j8z_A	354	Quinone oxidoreductase; medium-chain dehydrogenase	95.02
1boo_A	323	Protein (N-4 cytosine-specific methyltransferase P	95.02
1jvb_A	347	NAD(H)-dependent alcohol dehydrogenase; archaeon,	95.01
4fn4_A	254	Short chain dehydrogenase; NADH-binding, rossmann	94.99
3krt_A	456	Crotonyl COA reductase; structural genomics, prote	94.93
2dq4_A	343	L-threonine 3-dehydrogenase; NAD-dependent, oxidor	94.83
4g81_D	255	Putative hexonate dehydrogenase; enzyme function i	94.68
3pvc_A	689	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	94.67
3nx4_A	324	Putative oxidoreductase; csgid, structural genomic	94.63
2zb4_A	357	Prostaglandin reductase 2; rossmann fold, alternat	94.5
1piw_A	360	Hypothetical zinc-type alcohol dehydrogenase- like	94.46
3c85_A	183	Putative glutathione-regulated potassium-efflux S	94.26
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	94.05
3gaz_A	343	Alcohol dehydrogenase superfamily protein; oxidore	93.98
3pxx_A	287	Carveol dehydrogenase; structural genomics, seattl	93.89
3goh_A	315	Alcohol dehydrogenase, zinc-containing; NP_718042.	93.88
3swr_A	1002	DNA (cytosine-5)-methyltransferase 1; epigenetics,	93.81
2hwk_A	320	Helicase NSP2; rossman fold, alpha/beta/alpha, mul	93.77
3tjr_A	301	Short chain dehydrogenase; structural genomics, se	93.76
3r3s_A	294	Oxidoreductase; structural genomics, csgid, center	93.75
1iz0_A	302	Quinone oxidoreductase; APO-enzyme, riken structur	93.66
3o38_A	266	Short chain dehydrogenase; tuberculosis, ortholog	93.61
4eso_A	255	Putative oxidoreductase; NADP, structural genomics	93.57
4fgs_A	273	Probable dehydrogenase protein; PSI-biology, nysgr	93.53
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	93.45
4a0s_A	447	Octenoyl-COA reductase/carboxylase; oxidoreductase	93.41
1eg2_A	319	Modification methylase RSRI; rossmann fold, exocyc	93.39
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	93.19
4fs3_A	256	Enoyl-[acyl-carrier-protein] reductase [NADPH] FA;	93.18
3u5t_A	267	3-oxoacyl-[acyl-carrier-protein] reductase; struct	93.11
3v2g_A	271	3-oxoacyl-[acyl-carrier-protein] reductase; struct	93.05
3ijr_A	291	Oxidoreductase, short chain dehydrogenase/reducta;	93.01
3rku_A	287	Oxidoreductase YMR226C; substrate fingerprint, sho	92.91
3is3_A	270	17BETA-hydroxysteroid dehydrogenase; short chain d	92.84
3trk_A	324	Nonstructural polyprotein; hydrolase; 2.40A {Chiku	92.79
3tqh_A	321	Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella	92.7
3edm_A	259	Short chain dehydrogenase; structural genomics, ox	92.69
3oig_A	266	Enoyl-[acyl-carrier-protein] reductase [NADH]; fat	92.68
3lyl_A	247	3-oxoacyl-(acyl-carrier-protein) reductase; alpha	92.62
3pi7_A	349	NADH oxidoreductase; groes-like fold, NAD(P)-bindi	92.58
1g60_A	260	Adenine-specific methyltransferase MBOIIA; structu	92.55
3tfo_A	264	Putative 3-oxoacyl-(acyl-carrier-protein) reducta;	92.53
3lf2_A	265	Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross	92.44
1xa0_A	328	Putative NADPH dependent oxidoreductases; structur	92.44
3ioy_A	319	Short-chain dehydrogenase/reductase SDR; structura	92.42
3h7a_A	252	Short chain dehydrogenase; oxidoreductase, PSI-2,	92.42
3grk_A	293	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	92.31
4hp8_A	247	2-deoxy-D-gluconate 3-dehydrogenase; enzyme functi	92.22
2cdc_A	366	Glucose dehydrogenase glucose 1-dehydrogenase, DHG	92.22
3rkr_A	262	Short chain oxidoreductase; rossmann fold; HET: NA	92.22
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	92.12
3ftp_A	270	3-oxoacyl-[acyl-carrier protein] reductase; ssgcid	92.09
4ibo_A	271	Gluconate dehydrogenase; enzyme function initiativ	92.08
3t4x_A	267	Oxidoreductase, short chain dehydrogenase/reducta;	92.05
2vn8_A	375	Reticulon-4-interacting protein 1; mitochondrion,	92.01
4egf_A	266	L-xylulose reductase; structural genomics, ssgcid,	91.87
3gqv_A	371	Enoyl reductase; medium-chain reductase (MDR super	91.86
1gu7_A	364	Enoyl-[acyl-carrier-protein] reductase [NADPH, B-s	91.86
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	91.83
4imr_A	275	3-oxoacyl-(acyl-carrier-protein) reductase; oxidor	91.76
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	91.68
3pk0_A	262	Short-chain dehydrogenase/reductase SDR; ssgcid, s	91.67
1wma_A	276	Carbonyl reductase [NADPH] 1; oxidoreductase; HET:	91.6
3t7c_A	299	Carveol dehydrogenase; structural genomics, seattl	91.55
3oec_A	317	Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO;	91.51
3tox_A	280	Short chain dehydrogenase; structural genomics, PS	91.5
3f1l_A	252	Uncharacterized oxidoreductase YCIK; E. coli, NADP	91.49
3pgx_A	280	Carveol dehydrogenase; structural genomics, seattl	91.45
1id1_A	153	Putative potassium channel protein; RCK domain, E.	91.43
3sx2_A	278	Putative 3-ketoacyl-(acyl-carrier-protein) reduct;	91.4
3dmg_A	381	Probable ribosomal RNA small subunit methyltransf;	91.36
1yb1_A	272	17-beta-hydroxysteroid dehydrogenase type XI; shor	91.31
3o26_A	311	Salutaridine reductase; short chain dehydrogenase/	91.29
4dry_A	281	3-oxoacyl-[acyl-carrier-protein] reductase; struct	91.23
3v8b_A	283	Putative dehydrogenase, possibly 3-oxoacyl-[acyl-	91.22
3uve_A	286	Carveol dehydrogenase ((+)-trans-carveol dehydrog;	91.22
4da9_A	280	Short-chain dehydrogenase/reductase; structural ge	91.14
3oid_A	258	Enoyl-[acyl-carrier-protein] reductase [NADPH]; fa	90.95
3nyw_A	250	Putative oxidoreductase; fatty acid synthesis,3-ox	90.93
3svt_A	281	Short-chain type dehydrogenase/reductase; ssgcid,	90.84
4ft4_B	784	DNA (cytosine-5)-methyltransferase 1; chromodomain	90.81
3k31_A	296	Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI	90.74
3r1i_A	276	Short-chain type dehydrogenase/reductase; structur	90.71
3ucx_A	264	Short chain dehydrogenase; ssgcid, seattle structu	90.63
1tt7_A	330	YHFP; alcohol dehydrogenase, Zn-dependent, NAD, st	90.57
3imf_A	257	Short chain dehydrogenase; structural genomics, in	90.55
3ps9_A	676	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	90.54
3tsc_A	277	Putative oxidoreductase; structural genomics, seat	90.47
4dkj_A	403	Cytosine-specific methyltransferase; CG-specificit	90.23
4fc7_A	277	Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossman	90.02
4dmm_A	269	3-oxoacyl-[acyl-carrier-protein] reductase; rossma	89.73
3uf0_A	273	Short-chain dehydrogenase/reductase SDR; gluconate	89.71
2g5c_A	281	Prephenate dehydrogenase; TYRA, oxidoreductase; HE	89.6
3gvc_A	277	Oxidoreductase, probable short-chain type dehydrog	89.56
3qiv_A	253	Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR	89.52
3gaf_A	256	7-alpha-hydroxysteroid dehydrogenase; seattle stru	89.47
2bd0_A	244	Sepiapterin reductase; oxidoreductase; HET: NAP BI	89.47
1xg5_A	279	ARPG836; short chain dehydrogenase, human, SGC, st	89.41
3ksu_A	262	3-oxoacyl-acyl carrier protein reductase; structur	89.4
3l77_A	235	Short-chain alcohol dehydrogenase; oxidoreductase;	89.36
3s55_A	281	Putative short-chain dehydrogenase/reductase; stru	89.34
3sju_A	279	Keto reductase; short-chain dehydrogenase, oxidore	89.29
1geg_A	256	Acetoin reductase; SDR family, oxidoreductase; HET	89.15
3v2h_A	281	D-beta-hydroxybutyrate dehydrogenase; structural g	89.12
2f1k_A	279	Prephenate dehydrogenase; tyrosine synthesis, X-RA	89.1
1ja9_A	274	4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; p	89.04
3l6e_A	235	Oxidoreductase, short-chain dehydrogenase/reducta;	89.02
1g0o_A	283	Trihydroxynaphthalene reductase; protein-NADPH-act	88.94
3i1j_A	247	Oxidoreductase, short chain dehydrogenase/reducta;	88.92
3hwr_A	318	2-dehydropantoate 2-reductase; YP_299159.1, PANE/A	88.76
1sby_A	254	Alcohol dehydrogenase; ternary complex, NAD, trifl	88.69
3c24_A	286	Putative oxidoreductase; YP_511008.1, structural g	88.65
4e6p_A	259	Probable sorbitol dehydrogenase (L-iditol 2-dehyd;	88.57
3b1f_A	290	Putative prephenate dehydrogenase; enzyme, 4-hydro	88.45
4e3z_A	272	Putative oxidoreductase protein; PSI-biology, stru	88.42
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	88.38
4gua_A	670	Non-structural polyprotein; viral precursor polypr	88.37
1w6u_A	302	2,4-dienoyl-COA reductase, mitochondrial precursor	88.2
2ew2_A	316	2-dehydropantoate 2-reductase, putative; alpha-str	88.18
3op4_A	248	3-oxoacyl-[acyl-carrier protein] reductase; 3-keto	88.07
3d1l_A	266	Putative NADP oxidoreductase BF3122; structural ge	88.02
3sc4_A	285	Short chain dehydrogenase (A0QTM2 homolog); ssgcid	87.97
1vl8_A	267	Gluconate 5-dehydrogenase; TM0441, structural geno	87.92
3ek2_A	271	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	87.83
2dpo_A	319	L-gulonate 3-dehydrogenase; structural genomics, N	87.53
2y0c_A	478	BCEC, UDP-glucose dehydrogenase; oxidoreductase, c	87.52
3h8v_A	292	Ubiquitin-like modifier-activating enzyme 5; rossm	87.35
3e03_A	274	Short chain dehydrogenase; structural genomics, PS	87.19
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	87.1
3gg2_A	450	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd	87.06
4dqx_A	277	Probable oxidoreductase protein; structural genomi	87.06
2rhc_B	277	Actinorhodin polyketide ketoreductase; oxidoreduct	87.03
1ae1_A	273	Tropinone reductase-I; oxidoreductase, tropane alk	87.02
3ged_A	247	Short-chain dehydrogenase/reductase SDR; SCOR, ros	86.87
3icc_A	255	Putative 3-oxoacyl-(acyl carrier protein) reducta;	86.57

>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*

Probab=100.00  E-value=1.3e-31  Score=224.29  Aligned_cols=199  Identities=26%  Similarity=0.479  Sum_probs=173.3

Q ss_pred             cchhhHHHhhhcCccEEEcCceEEecCCCCCCCCCceeEEeCcccccCCCCchhHHHHHHHHHhhccCCCeEEEEcCcch
Q 026513            3 EQCNWIKKTQQSFHPVEVTKGLWIVPEWGAPPDVQATNIILNPGLAFGSGEHATTKLCLLLLRRLIKGGELFLDYGTGSG   82 (237)
Q Consensus         3 ~~~~w~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~g~~~~~~~~~~~l~~~~~~~~~vLDlG~G~G   82 (237)
                      ++.+|.+.|+++++|+..+. +.+.|+|... ......+.++|++.|++|.|+++..+++.+...+.++.+|||+|||+|
T Consensus        55 ~~~dw~~~~~~~~~p~~~~~-~~i~~~w~~~-~~~~~~~~l~p~~~fgtg~~~tt~~~~~~l~~~~~~~~~VLDiGcG~G  132 (254)
T 2nxc_A           55 GDEDWLEAWRRDLKPALAPP-FVVLAPWHTW-EGAEIPLVIEPGMAFGTGHHETTRLALKALARHLRPGDKVLDLGTGSG  132 (254)
T ss_dssp             CHHHHHHHHHHHCCCEEETT-EEEECTTCCC-CSSSEEEECCCC-----CCSHHHHHHHHHHHHHCCTTCEEEEETCTTS
T ss_pred             ChhHHHHHHHhhCCCEEEec-EEEeCCCCCC-CCCceEEEECCCccccCCCCHHHHHHHHHHHHhcCCCCEEEEecCCCc
Confidence            56899999999999999999 9999999984 666788999999999999999999999999887788999999999999


Q ss_pred             HHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccccccccccCCCCCCce
Q 026513           83 ILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDLSSHKIRGISQTEKY  162 (237)
Q Consensus        83 ~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f  162 (237)
                      .+++.+++.+. +|+|+|+|+.+++.|++++..+++.     +.+..+|+.+.                     .+.++|
T Consensus       133 ~l~~~la~~g~-~v~gvDi~~~~v~~a~~n~~~~~~~-----v~~~~~d~~~~---------------------~~~~~f  185 (254)
T 2nxc_A          133 VLAIAAEKLGG-KALGVDIDPMVLPQAEANAKRNGVR-----PRFLEGSLEAA---------------------LPFGPF  185 (254)
T ss_dssp             HHHHHHHHTTC-EEEEEESCGGGHHHHHHHHHHTTCC-----CEEEESCHHHH---------------------GGGCCE
T ss_pred             HHHHHHHHhCC-eEEEEECCHHHHHHHHHHHHHcCCc-----EEEEECChhhc---------------------CcCCCC
Confidence            99999998877 8999999999999999999988764     55667776521                     124689


Q ss_pred             eEEEEeCChHHHHHHHHHHhHhcCCCeEEEEeccCCCCHHHHHHHHhhc-cccceeeecCCEEEEEEEE
Q 026513          163 DVVIANILLNPLLQLADHIVSYAKPGAVVGISGILSEQLPHIINRYSEF-LEDILVSEMDDWTCVSGKK  230 (237)
Q Consensus       163 D~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~~~~~~~~~~~~~~~~~-~~~~~~~~~~~w~~~~~~~  230 (237)
                      |+|++|.+.+.+..++..+.++|+|||+++++++...+..++...+.+. |..++....++|.++.++|
T Consensus       186 D~Vv~n~~~~~~~~~l~~~~~~LkpgG~lils~~~~~~~~~v~~~l~~~Gf~~~~~~~~~~W~~l~~~k  254 (254)
T 2nxc_A          186 DLLVANLYAELHAALAPRYREALVPGGRALLTGILKDRAPLVREAMAGAGFRPLEEAAEGEWVLLAYGR  254 (254)
T ss_dssp             EEEEEECCHHHHHHHHHHHHHHEEEEEEEEEEEEEGGGHHHHHHHHHHTTCEEEEEEEETTEEEEEEEC
T ss_pred             CEEEECCcHHHHHHHHHHHHHHcCCCCEEEEEeeccCCHHHHHHHHHHCCCEEEEEeccCCeEEEEEEC
Confidence            9999999999889999999999999999999999888899999998876 9999999999999999875

>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}

Probab=99.96  E-value=3.1e-27  Score=190.58  Aligned_cols=199  Identities=35%  Similarity=0.472  Sum_probs=167.7

Q ss_pred             hcCccEEEcCceEEecCCCCCC--CCCceeEEeCcccccCCCCchhHHHHHHHHHhhccCCCeEEEEcCcchHHHHHHHH
Q 026513           13 QSFHPVEVTKGLWIVPEWGAPP--DVQATNIILNPGLAFGSGEHATTKLCLLLLRRLIKGGELFLDYGTGSGILGIAAIK   90 (237)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~f~~g~~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~la~   90 (237)
                      ++|.|+..+..+...|.|....  ......+.++|++.|+++.++....++..+...+.++.+|||+|||+|.++..+++
T Consensus         1 ~~~~~~~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~l~~   80 (205)
T 3grz_A            1 KYYHVINLSRHLAIVPEWEDYQPVFKDQEIIRLDPGLAFGTGNHQTTQLAMLGIERAMVKPLTVADVGTGSGILAIAAHK   80 (205)
T ss_dssp             CCCCCEEEETTEEEEETTCCCCCSSTTCEEEEESCC-----CCHHHHHHHHHHHHHHCSSCCEEEEETCTTSHHHHHHHH
T ss_pred             CCCCcEEECCcEEEeccccccccCCCCceeEEecCCcccCCCCCccHHHHHHHHHHhccCCCEEEEECCCCCHHHHHHHH
Confidence            3689999999999999999843  35678889999999999999999999999988788899999999999999999998


Q ss_pred             hCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccccccccccCCCCCCceeEEEEeCC
Q 026513           91 FGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANIL  170 (237)
Q Consensus        91 ~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~  170 (237)
                      .+..+|+|+|+|+.+++.|++++..+++.+    +.++.+|+.+                     . ..++||+|+++++
T Consensus        81 ~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~----v~~~~~d~~~---------------------~-~~~~fD~i~~~~~  134 (205)
T 3grz_A           81 LGAKSVLATDISDESMTAAEENAALNGIYD----IALQKTSLLA---------------------D-VDGKFDLIVANIL  134 (205)
T ss_dssp             TTCSEEEEEESCHHHHHHHHHHHHHTTCCC----CEEEESSTTT---------------------T-CCSCEEEEEEESC
T ss_pred             CCCCEEEEEECCHHHHHHHHHHHHHcCCCc----eEEEeccccc---------------------c-CCCCceEEEECCc
Confidence            888899999999999999999999888775    7788888752                     1 1478999999999


Q ss_pred             hHHHHHHHHHHhHhcCCCeEEEEeccCCCCHHHHHHHHhhc-cccceeeecCCEEEEEEEEcccccCC
Q 026513          171 LNPLLQLADHIVSYAKPGAVVGISGILSEQLPHIINRYSEF-LEDILVSEMDDWTCVSGKKKRVKEDH  237 (237)
Q Consensus       171 ~~~~~~~l~~~~~~L~~gG~liis~~~~~~~~~~~~~~~~~-~~~~~~~~~~~w~~~~~~~~~~~~~~  237 (237)
                      ++.+..+++.+.++|+|||.++++++...+..++...+... |+.+.....++|..++.++++..+.|
T Consensus       135 ~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~Gf~~~~~~~~~~w~~~~~~~~~~~~~~  202 (205)
T 3grz_A          135 AEILLDLIPQLDSHLNEDGQVIFSGIDYLQLPKIEQALAENSFQIDLKMRAGRWIGLAISRKHEGHHH  202 (205)
T ss_dssp             HHHHHHHGGGSGGGEEEEEEEEEEEEEGGGHHHHHHHHHHTTEEEEEEEEETTEEEEEEEECC-----
T ss_pred             HHHHHHHHHHHHHhcCCCCEEEEEecCcccHHHHHHHHHHcCCceEEeeccCCEEEEEEecccccccc
Confidence            99999999999999999999999988888888888888765 88888899999999999988766543

>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*

Probab=99.79  E-value=3.9e-18  Score=150.22  Aligned_cols=166  Identities=16%  Similarity=0.245  Sum_probs=128.6

Q ss_pred             ceeEEeCcccccCCCCchhHHHHHHHHHhhc----cCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHH
Q 026513           38 ATNIILNPGLAFGSGEHATTKLCLLLLRRLI----KGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNA  113 (237)
Q Consensus        38 ~~~~~~~~~~~f~~g~~~~~~~~~~~l~~~~----~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~  113 (237)
                      ...+...|+.+++.+..+.+..+++.+....    .++.+|||+|||+|.++..+++.+ .+|+++|+|+.+++.|++++
T Consensus       197 ~~~~~~~pgvFs~~~~d~~t~~ll~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~la~~g-~~V~gvDis~~al~~A~~n~  275 (381)
T 3dmg_A          197 EYTFHHLPGVFSAGKVDPASLLLLEALQERLGPEGVRGRQVLDLGAGYGALTLPLARMG-AEVVGVEDDLASVLSLQKGL  275 (381)
T ss_dssp             EEEEEECTTCTTTTSCCHHHHHHHHHHHHHHCTTTTTTCEEEEETCTTSTTHHHHHHTT-CEEEEEESBHHHHHHHHHHH
T ss_pred             eEEEEeCCCceeCCCCCHHHHHHHHHHHHhhcccCCCCCEEEEEeeeCCHHHHHHHHcC-CEEEEEECCHHHHHHHHHHH
Confidence            3467888999998889999999999887654    367899999999999999999885 48999999999999999999


Q ss_pred             HHcCCCCCcceEEeccCccccccccccccccccccccccccCCCCCCceeEEEEeCChHH--------HHHHHHHHhHhc
Q 026513          114 ALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLNP--------LLQLADHIVSYA  185 (237)
Q Consensus       114 ~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~~~--------~~~~l~~~~~~L  185 (237)
                      ..+++.     +.++.+|+.+.                    ....++||+|++|++++.        ...++..+.++|
T Consensus       276 ~~~~~~-----v~~~~~D~~~~--------------------~~~~~~fD~Ii~npp~~~~~~~~~~~~~~~l~~~~~~L  330 (381)
T 3dmg_A          276 EANALK-----AQALHSDVDEA--------------------LTEEARFDIIVTNPPFHVGGAVILDVAQAFVNVAAARL  330 (381)
T ss_dssp             HHTTCC-----CEEEECSTTTT--------------------SCTTCCEEEEEECCCCCTTCSSCCHHHHHHHHHHHHHE
T ss_pred             HHcCCC-----eEEEEcchhhc--------------------cccCCCeEEEEECCchhhcccccHHHHHHHHHHHHHhc
Confidence            988865     67788887631                    122479999999998764        357899999999


Q ss_pred             CCCeEEEEeccCCCCHHHHHHHHhhccccceeeecCCEEEEEEEEcc
Q 026513          186 KPGAVVGISGILSEQLPHIINRYSEFLEDILVSEMDDWTCVSGKKKR  232 (237)
Q Consensus       186 ~~gG~liis~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~  232 (237)
                      +|||.+++++.........+..   .|..++.....++..+...+..
T Consensus       331 kpGG~l~iv~n~~l~~~~~l~~---~f~~v~~l~~~gF~Vl~a~~~~  374 (381)
T 3dmg_A          331 RPGGVFFLVSNPFLKYEPLLEE---KFGAFQTLKVAEYKVLFAEKRG  374 (381)
T ss_dssp             EEEEEEEEEECTTSCHHHHHHH---HHSCCEEEEESSSEEEEEECC-
T ss_pred             CcCcEEEEEEcCCCChHHHHHH---hhccEEEEeCCCEEEEEEEEec
Confidence            9999999986654443333332   2333444466778877776544

>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*

Probab=99.76  E-value=7.6e-18  Score=141.15  Aligned_cols=117  Identities=18%  Similarity=0.259  Sum_probs=94.6

Q ss_pred             hHHHHHHHHHhhccCCCeEEEEcCcchHHHHHHHHh---CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcc
Q 026513           56 TTKLCLLLLRRLIKGGELFLDYGTGSGILGIAAIKF---GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRT  132 (237)
Q Consensus        56 ~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~la~~---~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~  132 (237)
                      ...++..++...+++|.+|||+|||+|.++..+++.   +..+|+|+|+|+.|++.|++++...+...   +++++++|+
T Consensus        56 ~~~~i~~l~~~~~~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~~~---~v~~~~~D~  132 (261)
T 4gek_A           56 IISMIGMLAERFVQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPT---PVDVIEGDI  132 (261)
T ss_dssp             HHHHHHHHHHHHCCTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCCSS---CEEEEESCT
T ss_pred             HHHHHHHHHHHhCCCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhccCc---eEEEeeccc
Confidence            334444555566789999999999999999999875   34589999999999999999998877654   588999998


Q ss_pred             ccccccccccccccccccccccCCCCCCceeEEEEeCChHHH-----HHHHHHHhHhcCCCeEEEEeccC
Q 026513          133 FTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLNPL-----LQLADHIVSYAKPGAVVGISGIL  197 (237)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~~~~-----~~~l~~~~~~L~~gG~liis~~~  197 (237)
                      .+                     +. .++||+|+++..++++     ..+++++.+.|+|||.++++...
T Consensus       133 ~~---------------------~~-~~~~d~v~~~~~l~~~~~~~~~~~l~~i~~~LkpGG~lii~e~~  180 (261)
T 4gek_A          133 RD---------------------IA-IENASMVVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEKF  180 (261)
T ss_dssp             TT---------------------CC-CCSEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEB
T ss_pred             cc---------------------cc-ccccccceeeeeeeecCchhHhHHHHHHHHHcCCCcEEEEEecc
Confidence            63                     21 3579999999887654     35799999999999999998654

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=99.76  E-value=3.4e-17  Score=143.96  Aligned_cols=173  Identities=14%  Similarity=0.171  Sum_probs=124.8

Q ss_pred             ceeEEeCcccccCCCCchhHHHHHHHHHhhccCCCeEEEEcCcchHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHHc
Q 026513           38 ATNIILNPGLAFGSGEHATTKLCLLLLRRLIKGGELFLDYGTGSGILGIAAIKF-GAAMSVGADIDPQAIKSAHQNAALN  116 (237)
Q Consensus        38 ~~~~~~~~~~~f~~g~~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~la~~-~~~~v~~vD~s~~~i~~a~~~~~~~  116 (237)
                      ...+...|+.+...+....+++++..+..  .++.+|||+|||+|.+++.+++. +..+|+++|+|+.+++.|++++..+
T Consensus       192 ~~~~~~~pg~Fs~~~~d~~~~~ll~~l~~--~~~~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~s~~al~~Ar~n~~~n  269 (375)
T 4dcm_A          192 DWTIHNHANVFSRTGLDIGARFFMQHLPE--NLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETN  269 (375)
T ss_dssp             TEEEEECTTCTTCSSCCHHHHHHHHTCCC--SCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHH
T ss_pred             ceEEEeCCCcccCCcccHHHHHHHHhCcc--cCCCeEEEEeCcchHHHHHHHHHCCCCEEEEEECcHHHHHHHHHHHHHc
Confidence            46777888888877788877777666532  34579999999999999999976 4678999999999999999999998


Q ss_pred             CCCCCcceEEeccCccccccccccccccccccccccccCCCCCCceeEEEEeCChHHH--------HHHHHHHhHhcCCC
Q 026513          117 NIGPKKMKLHLVPDRTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLNPL--------LQLADHIVSYAKPG  188 (237)
Q Consensus       117 ~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~~~~--------~~~l~~~~~~L~~g  188 (237)
                      ++.+ ..++.++.+|..+                     ..+.++||+|++|+|++..        .+++..+.+.|+||
T Consensus       270 gl~~-~~~v~~~~~D~~~---------------------~~~~~~fD~Ii~nppfh~~~~~~~~~~~~~l~~~~~~Lkpg  327 (375)
T 4dcm_A          270 MPEA-LDRCEFMINNALS---------------------GVEPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKIN  327 (375)
T ss_dssp             CGGG-GGGEEEEECSTTT---------------------TCCTTCEEEEEECCCC-------CCHHHHHHHHHHHHEEEE
T ss_pred             CCCc-CceEEEEechhhc---------------------cCCCCCeeEEEECCCcccCcccCHHHHHHHHHHHHHhCCCC
Confidence            8652 2247788888763                     2235789999999998642        35789999999999


Q ss_pred             eEEEEeccCCCCHHHHHHHHhhccccc-eeeecCCEEEEEEEEcccccCC
Q 026513          189 AVVGISGILSEQLPHIINRYSEFLEDI-LVSEMDDWTCVSGKKKRVKEDH  237 (237)
Q Consensus       189 G~liis~~~~~~~~~~~~~~~~~~~~~-~~~~~~~w~~~~~~~~~~~~~~  237 (237)
                      |.+++.+.........+..   .|... .+...+++..+.....+....|
T Consensus       328 G~l~iv~n~~~~~~~~l~~---~fg~~~~~a~~~~F~V~~~~~~~~~~~~  374 (375)
T 4dcm_A          328 GELYIVANRHLDYFHKLKK---IFGNCTTIATNNKFVVLKAVKLEHHHHH  374 (375)
T ss_dssp             EEEEEEEETTSCHHHHHHH---HHSCCEEEEECSSEEEEEEECCC-----
T ss_pred             cEEEEEEECCcCHHHHHHH---hcCCEEEEeeCCCEEEEEEcCccccccC
Confidence            9999986544433333332   22222 3346777888877776665544

>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}

Probab=99.76  E-value=5.9e-18  Score=134.51  Aligned_cols=107  Identities=21%  Similarity=0.228  Sum_probs=89.7

Q ss_pred             cCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccccc
Q 026513           69 KGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDL  148 (237)
Q Consensus        69 ~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~  148 (237)
                      .++.+|||+|||+|.+++.++..+..+|+|+|+|+.+++.|++++..+++.+    ++++++|+.+..            
T Consensus        43 ~~~~~vLDlgcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~----v~~~~~d~~~~~------------  106 (189)
T 3p9n_A           43 LTGLAVLDLYAGSGALGLEALSRGAASVLFVESDQRSAAVIARNIEALGLSG----ATLRRGAVAAVV------------  106 (189)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHHTTCSEEEEEECCHHHHHHHHHHHHHHTCSC----EEEEESCHHHHH------------
T ss_pred             CCCCEEEEeCCCcCHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCCc----eEEEEccHHHHH------------
Confidence            4788999999999999998888888899999999999999999999988853    889999986321            


Q ss_pred             ccccccCCCCCCceeEEEEeCChHH----HHHHHHHHhH--hcCCCeEEEEeccC
Q 026513          149 SSHKIRGISQTEKYDVVIANILLNP----LLQLADHIVS--YAKPGAVVGISGIL  197 (237)
Q Consensus       149 ~~~~~~~~~~~~~fD~I~~n~~~~~----~~~~l~~~~~--~L~~gG~liis~~~  197 (237)
                            .....++||+|++|++++.    ..+++..+.+  +|+|||.+++....
T Consensus       107 ------~~~~~~~fD~i~~~~p~~~~~~~~~~~l~~~~~~~~L~pgG~l~~~~~~  155 (189)
T 3p9n_A          107 ------AAGTTSPVDLVLADPPYNVDSADVDAILAALGTNGWTREGTVAVVERAT  155 (189)
T ss_dssp             ------HHCCSSCCSEEEECCCTTSCHHHHHHHHHHHHHSSSCCTTCEEEEEEET
T ss_pred             ------hhccCCCccEEEECCCCCcchhhHHHHHHHHHhcCccCCCeEEEEEecC
Confidence                  1012578999999999765    5677888988  99999999997543

>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4

Probab=99.76  E-value=5.7e-17  Score=128.05  Aligned_cols=150  Identities=20%  Similarity=0.277  Sum_probs=115.7

Q ss_pred             hhHHHHHHHHHhhccCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccc
Q 026513           55 ATTKLCLLLLRRLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFT  134 (237)
Q Consensus        55 ~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~  134 (237)
                      .....++..+.  ..++.+|||+|||+|.++..+++. ..+++|+|+++.+++.|++++..+++.+.  ++.++.+|+.+
T Consensus        39 ~~~~~l~~~~~--~~~~~~vLdiG~G~G~~~~~~~~~-~~~v~~~D~~~~~~~~a~~~~~~~~~~~~--~~~~~~~d~~~  113 (194)
T 1dus_A           39 KGTKILVENVV--VDKDDDILDLGCGYGVIGIALADE-VKSTTMADINRRAIKLAKENIKLNNLDNY--DIRVVHSDLYE  113 (194)
T ss_dssp             HHHHHHHHHCC--CCTTCEEEEETCTTSHHHHHHGGG-SSEEEEEESCHHHHHHHHHHHHHTTCTTS--CEEEEECSTTT
T ss_pred             hHHHHHHHHcc--cCCCCeEEEeCCCCCHHHHHHHHc-CCeEEEEECCHHHHHHHHHHHHHcCCCcc--ceEEEECchhc
Confidence            44455555442  347889999999999999999887 67899999999999999999988876531  26777888763


Q ss_pred             ccccccccccccccccccccCCCCCCceeEEEEeCChHH----HHHHHHHHhHhcCCCeEEEEeccCCCCHHHHHHHHhh
Q 026513          135 ASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLNP----LLQLADHIVSYAKPGAVVGISGILSEQLPHIINRYSE  210 (237)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~~~----~~~~l~~~~~~L~~gG~liis~~~~~~~~~~~~~~~~  210 (237)
                                           ....++||+|++++++++    ...+++.+.++|+|||.+++.........++...+.+
T Consensus       114 ---------------------~~~~~~~D~v~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~  172 (194)
T 1dus_A          114 ---------------------NVKDRKYNKIITNPPIRAGKEVLHRIIEEGKELLKDNGEIWVVIQTKQGAKSLAKYMKD  172 (194)
T ss_dssp             ---------------------TCTTSCEEEEEECCCSTTCHHHHHHHHHHHHHHEEEEEEEEEEEESTHHHHHHHHHHHH
T ss_pred             ---------------------ccccCCceEEEECCCcccchhHHHHHHHHHHHHcCCCCEEEEEECCCCChHHHHHHHHH
Confidence                                 222568999999998653    4578999999999999999998777667777777777


Q ss_pred             cccccee-eecCCEEEEEEEE
Q 026513          211 FLEDILV-SEMDDWTCVSGKK  230 (237)
Q Consensus       211 ~~~~~~~-~~~~~w~~~~~~~  230 (237)
                      .|..++. ....+|..+..+|
T Consensus       173 ~~~~~~~~~~~~~~~~~~~~k  193 (194)
T 1dus_A          173 VFGNVETVTIKGGYRVLKSKK  193 (194)
T ss_dssp             HHSCCEEEEEETTEEEEEEEC
T ss_pred             HhcceEEEecCCcEEEEEEee
Confidence            6544444 4567788877765

>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}

Probab=99.75  E-value=5.4e-17  Score=135.42  Aligned_cols=120  Identities=19%  Similarity=0.236  Sum_probs=97.3

Q ss_pred             CCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccccc
Q 026513           70 GGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDLS  149 (237)
Q Consensus        70 ~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~  149 (237)
                      ++.+|||+|||+|.+++.+++.+..+|+|+|+++.+++.|++++..+++.+   ++.++++|+.+..             
T Consensus        49 ~~~~vLDlG~G~G~~~~~la~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~---~v~~~~~D~~~~~-------------  112 (259)
T 3lpm_A           49 RKGKIIDLCSGNGIIPLLLSTRTKAKIVGVEIQERLADMAKRSVAYNQLED---QIEIIEYDLKKIT-------------  112 (259)
T ss_dssp             SCCEEEETTCTTTHHHHHHHTTCCCEEEEECCSHHHHHHHHHHHHHTTCTT---TEEEECSCGGGGG-------------
T ss_pred             CCCEEEEcCCchhHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCcc---cEEEEECcHHHhh-------------
Confidence            688999999999999999998866689999999999999999999998875   4889999987421             


Q ss_pred             cccccCCCCCCceeEEEEeCChHH-----------------------HHHHHHHHhHhcCCCeEEEEeccCCCCHHHHHH
Q 026513          150 SHKIRGISQTEKYDVVIANILLNP-----------------------LLQLADHIVSYAKPGAVVGISGILSEQLPHIIN  206 (237)
Q Consensus       150 ~~~~~~~~~~~~fD~I~~n~~~~~-----------------------~~~~l~~~~~~L~~gG~liis~~~~~~~~~~~~  206 (237)
                           ...+.++||+|++|||+..                       +..++..+.++|+|||.+++. .......++..
T Consensus       113 -----~~~~~~~fD~Ii~npPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~-~~~~~~~~~~~  186 (259)
T 3lpm_A          113 -----DLIPKERADIVTCNPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANFV-HRPERLLDIID  186 (259)
T ss_dssp             -----GTSCTTCEEEEEECCCC-----------------------HHHHHHHHHHHHHEEEEEEEEEE-ECTTTHHHHHH
T ss_pred             -----hhhccCCccEEEECCCCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEEE-EcHHHHHHHHH
Confidence                 1123579999999998633                       246889999999999999994 34566677777


Q ss_pred             HHhhc
Q 026513          207 RYSEF  211 (237)
Q Consensus       207 ~~~~~  211 (237)
                      .+...
T Consensus       187 ~l~~~  191 (259)
T 3lpm_A          187 IMRKY  191 (259)
T ss_dssp             HHHHT
T ss_pred             HHHHC
Confidence            77653

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*

Probab=99.75  E-value=5.5e-17  Score=128.17  Aligned_cols=119  Identities=15%  Similarity=0.135  Sum_probs=93.2

Q ss_pred             hhHHHHHHHHHhhccCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccc
Q 026513           55 ATTKLCLLLLRRLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFT  134 (237)
Q Consensus        55 ~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~  134 (237)
                      ........++...++++.+|||+|||+|.++..+++. ..+|+|+|+|+.+++.|++++..+++.+    +.+++.+...
T Consensus         7 ~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~-~~~v~~vD~s~~~l~~a~~~~~~~~~~~----v~~~~~~~~~   81 (185)
T 3mti_A            7 RPIHMSHDFLAEVLDDESIVVDATMGNGNDTAFLAGL-SKKVYAFDVQEQALGKTSQRLSDLGIEN----TELILDGHEN   81 (185)
T ss_dssp             CHHHHHHHHHHTTCCTTCEEEESCCTTSHHHHHHHTT-SSEEEEEESCHHHHHHHHHHHHHHTCCC----EEEEESCGGG
T ss_pred             hHHHHHHHHHHHhCCCCCEEEEEcCCCCHHHHHHHHh-CCEEEEEECCHHHHHHHHHHHHHcCCCc----EEEEeCcHHH
Confidence            3445566666666788999999999999999999988 6789999999999999999999888754    7777766542


Q ss_pred             ccccccccccccccccccccCCCCCCceeEEEEeCCh------------HHHHHHHHHHhHhcCCCeEEEEeccC
Q 026513          135 ASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILL------------NPLLQLADHIVSYAKPGAVVGISGIL  197 (237)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~------------~~~~~~l~~~~~~L~~gG~liis~~~  197 (237)
                                        +.... +++||+|+++++.            ......++.+.+.|+|||.+++..+.
T Consensus        82 ------------------l~~~~-~~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~  137 (185)
T 3mti_A           82 ------------------LDHYV-REPIRAAIFNLGYLPSADKSVITKPHTTLEAIEKILDRLEVGGRLAIMIYY  137 (185)
T ss_dssp             ------------------GGGTC-CSCEEEEEEEEC-----------CHHHHHHHHHHHHHHEEEEEEEEEEEC-
T ss_pred             ------------------HHhhc-cCCcCEEEEeCCCCCCcchhcccChhhHHHHHHHHHHhcCCCcEEEEEEeC
Confidence                              11122 5689999999532            22345689999999999999998664

>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}

Probab=99.75  E-value=3.3e-17  Score=133.85  Aligned_cols=146  Identities=21%  Similarity=0.283  Sum_probs=104.2

Q ss_pred             HHhhccCCCeEEEEcCc-chHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccc
Q 026513           64 LRRLIKGGELFLDYGTG-SGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVD  142 (237)
Q Consensus        64 l~~~~~~~~~vLDlG~G-~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~  142 (237)
                      +...++++.+|||+||| +|.++..+++....+|+|+|+|+.+++.|++++..+++ +    +.++++|+..        
T Consensus        49 ~~~~~~~~~~vLDlG~G~~G~~~~~la~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~----v~~~~~d~~~--------  115 (230)
T 3evz_A           49 LKTFLRGGEVALEIGTGHTAMMALMAEKFFNCKVTATEVDEEFFEYARRNIERNNS-N----VRLVKSNGGI--------  115 (230)
T ss_dssp             HHTTCCSSCEEEEECCTTTCHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHTTC-C----CEEEECSSCS--------
T ss_pred             hHhhcCCCCEEEEcCCCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHhCC-C----cEEEeCCchh--------
Confidence            34456789999999999 99999999876467799999999999999999999887 3    7788888631        


Q ss_pred             ccccccccccccCCCCCCceeEEEEeCChHH----------------------HHHHHHHHhHhcCCCeEEEEeccC-CC
Q 026513          143 GVVEDLSSHKIRGISQTEKYDVVIANILLNP----------------------LLQLADHIVSYAKPGAVVGISGIL-SE  199 (237)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~fD~I~~n~~~~~----------------------~~~~l~~~~~~L~~gG~liis~~~-~~  199 (237)
                                +..+ ++++||+|++|+|+..                      +..+++.+.++|+|||++++.... ..
T Consensus       116 ----------~~~~-~~~~fD~I~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~  184 (230)
T 3evz_A          116 ----------IKGV-VEGTFDVIFSAPPYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALYLPDKEK  184 (230)
T ss_dssp             ----------STTT-CCSCEEEEEECCCCC---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEEEESCHH
T ss_pred             ----------hhhc-ccCceeEEEECCCCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEEecccHh
Confidence                      1122 2478999999998643                      367899999999999999996432 23


Q ss_pred             CHHHHHHHHhhc-ccccee--eecCCEEEEEEEEccc
Q 026513          200 QLPHIINRYSEF-LEDILV--SEMDDWTCVSGKKKRV  233 (237)
Q Consensus       200 ~~~~~~~~~~~~-~~~~~~--~~~~~w~~~~~~~~~~  233 (237)
                      ...++...+... |.....  .....|..+..-.+.+
T Consensus       185 ~~~~~~~~l~~~g~~~~~~~~~~g~~~~~~l~f~~~~  221 (230)
T 3evz_A          185 LLNVIKERGIKLGYSVKDIKFKVGTRWRHSLIFFKGI  221 (230)
T ss_dssp             HHHHHHHHHHHTTCEEEEEEECCCC-CEEEEEEECCC
T ss_pred             HHHHHHHHHHHcCCceEEEEecCCCeEEEEEEEeccc
Confidence            455666666654 433332  3334454443333333

>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46

Probab=99.74  E-value=3.5e-17  Score=131.67  Aligned_cols=135  Identities=15%  Similarity=0.068  Sum_probs=98.9

Q ss_pred             CCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCC--CCCcceEEeccCccccccccccccccccc
Q 026513           70 GGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNI--GPKKMKLHLVPDRTFTASMNERVDGVVED  147 (237)
Q Consensus        70 ~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~--~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  147 (237)
                      ++.+|||+|||+|.+++.++..+..+|+|+|+|+.+++.|++++..+++  .+    +.++++|+.+..           
T Consensus        53 ~~~~vLDlGcGtG~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~----v~~~~~d~~~~~-----------  117 (201)
T 2ift_A           53 HQSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQTLKCSSEQ----AEVINQSSLDFL-----------  117 (201)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCTTT----EEEECSCHHHHT-----------
T ss_pred             CCCeEEEcCCccCHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHHhCCCccc----eEEEECCHHHHH-----------
Confidence            6789999999999999988877778899999999999999999999887  33    889999976311           


Q ss_pred             cccccccCCCCCCc-eeEEEEeCChH--HHHHHHHHH--hHhcCCCeEEEEeccCCCCHHHHHHHHhhccccceeeecCC
Q 026513          148 LSSHKIRGISQTEK-YDVVIANILLN--PLLQLADHI--VSYAKPGAVVGISGILSEQLPHIINRYSEFLEDILVSEMDD  222 (237)
Q Consensus       148 ~~~~~~~~~~~~~~-fD~I~~n~~~~--~~~~~l~~~--~~~L~~gG~liis~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (237)
                             ....+++ ||+|+++++++  ....++..+  .++|+|||.+++++.... ..+    ....+..+.....|.
T Consensus       118 -------~~~~~~~~fD~I~~~~~~~~~~~~~~l~~~~~~~~LkpgG~l~i~~~~~~-~~~----~~~~~~~~~~~~yG~  185 (201)
T 2ift_A          118 -------KQPQNQPHFDVVFLDPPFHFNLAEQAISLLCENNWLKPNALIYVETEKDK-PLI----TPENWTLLKEKTTGI  185 (201)
T ss_dssp             -------TSCCSSCCEEEEEECCCSSSCHHHHHHHHHHHTTCEEEEEEEEEEEESSS-CCC----CCTTEEEEEEEEETT
T ss_pred             -------HhhccCCCCCEEEECCCCCCccHHHHHHHHHhcCccCCCcEEEEEECCCC-Ccc----ccchhHHHHHHhcCC
Confidence                   1112467 99999999943  345667777  567999999999866444 111    112344444455666


Q ss_pred             EEEEEEEEc
Q 026513          223 WTCVSGKKK  231 (237)
Q Consensus       223 w~~~~~~~~  231 (237)
                      .....+++.
T Consensus       186 ~~~~~~~~~  194 (201)
T 2ift_A          186 VSYRLYQNL  194 (201)
T ss_dssp             EEEEEEEEC
T ss_pred             EEEEEEecc
Confidence            655555543

>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A*

Probab=99.74  E-value=8.8e-17  Score=131.47  Aligned_cols=145  Identities=12%  Similarity=0.163  Sum_probs=112.7

Q ss_pred             HHHHHhhccCCCeEEEEcCcchHHHHHHHHhC-CCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccc
Q 026513           61 LLLLRRLIKGGELFLDYGTGSGILGIAAIKFG-AAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNE  139 (237)
Q Consensus        61 ~~~l~~~~~~~~~vLDlG~G~G~~~~~la~~~-~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~  139 (237)
                      ++.+...+++|.+|||+|||+|.+++.+++.+ ..+|+|+|+++.+++.|++|+..+++.+   ++.+..+|.++     
T Consensus         6 L~~l~~~v~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~---~i~~~~~d~l~-----   77 (225)
T 3kr9_A            6 LELVASFVSQGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGLKE---KIQVRLANGLA-----   77 (225)
T ss_dssp             HHHHHTTSCTTEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTT---TEEEEECSGGG-----
T ss_pred             HHHHHHhCCCCCEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCc---eEEEEECchhh-----
Confidence            45556677889999999999999999999875 6789999999999999999999999976   58899999864     


Q ss_pred             cccccccccccccccCCCCCCceeEEEE-eCChHHHHHHHHHHhHhcCCCeEEEEeccCCCCHHHHHHHHhhc-ccccee
Q 026513          140 RVDGVVEDLSSHKIRGISQTEKYDVVIA-NILLNPLLQLADHIVSYAKPGAVVGISGILSEQLPHIINRYSEF-LEDILV  217 (237)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~fD~I~~-n~~~~~~~~~l~~~~~~L~~gG~liis~~~~~~~~~~~~~~~~~-~~~~~~  217 (237)
                                     .+.+..+||+|++ +.....+.+++......|+++|+++++..  .....+...+.++ |..+..
T Consensus        78 ---------------~l~~~~~~D~IviaG~Gg~~i~~Il~~~~~~L~~~~~lVlq~~--~~~~~vr~~L~~~Gf~i~~e  140 (225)
T 3kr9_A           78 ---------------AFEETDQVSVITIAGMGGRLIARILEEGLGKLANVERLILQPN--NREDDLRIWLQDHGFQIVAE  140 (225)
T ss_dssp             ---------------GCCGGGCCCEEEEEEECHHHHHHHHHHTGGGCTTCCEEEEEES--SCHHHHHHHHHHTTEEEEEE
T ss_pred             ---------------hcccCcCCCEEEEcCCChHHHHHHHHHHHHHhCCCCEEEEECC--CCHHHHHHHHHHCCCEEEEE
Confidence                           2221236998775 55555678999999999999999999887  4677777777665 766654


Q ss_pred             e---ecCCEEE-EEEEE
Q 026513          218 S---EMDDWTC-VSGKK  230 (237)
Q Consensus       218 ~---~~~~w~~-~~~~~  230 (237)
                      .   +.+.|.- +..++
T Consensus       141 ~lv~e~~~~Yeii~~~~  157 (225)
T 3kr9_A          141 SILEEAGKFYEILVVEA  157 (225)
T ss_dssp             EEEEETTEEEEEEEEEE
T ss_pred             EEEEECCEEEEEEEEEe
Confidence            2   3444443 44444

>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0

Probab=99.73  E-value=9.7e-17  Score=128.86  Aligned_cols=120  Identities=16%  Similarity=0.157  Sum_probs=100.5

Q ss_pred             ccCCCeEEEEcCcchHHHHHHHHhC-CCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccc
Q 026513           68 IKGGELFLDYGTGSGILGIAAIKFG-AAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVE  146 (237)
Q Consensus        68 ~~~~~~vLDlG~G~G~~~~~la~~~-~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  146 (237)
                      +.++.+|||+|||+|.++..+++.+ ..+|+++|+|+.+++.|++++..+++.+    +.++.+|..+            
T Consensus        38 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~----v~~~~~d~~~------------  101 (204)
T 3e05_A           38 LQDDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFVARN----VTLVEAFAPE------------  101 (204)
T ss_dssp             CCTTCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHHTCTT----EEEEECCTTT------------
T ss_pred             CCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCc----EEEEeCChhh------------
Confidence            4678899999999999999999774 6789999999999999999999888754    8888898753            


Q ss_pred             ccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEeccCCCCHHHHHHHHhhc
Q 026513          147 DLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILSEQLPHIINRYSEF  211 (237)
Q Consensus       147 ~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~~~~~~~~~~~~~~~~~  211 (237)
                              .+....+||+|+++.+.+....+++.+.+.|+|||.+++.+.......++...+...
T Consensus       102 --------~~~~~~~~D~i~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~  158 (204)
T 3e05_A          102 --------GLDDLPDPDRVFIGGSGGMLEEIIDAVDRRLKSEGVIVLNAVTLDTLTKAVEFLEDH  158 (204)
T ss_dssp             --------TCTTSCCCSEEEESCCTTCHHHHHHHHHHHCCTTCEEEEEECBHHHHHHHHHHHHHT
T ss_pred             --------hhhcCCCCCEEEECCCCcCHHHHHHHHHHhcCCCeEEEEEecccccHHHHHHHHHHC
Confidence                    122236799999999887788899999999999999999877666667777766654

>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}

Probab=99.73  E-value=1.1e-16  Score=131.18  Aligned_cols=146  Identities=12%  Similarity=0.161  Sum_probs=113.2

Q ss_pred             HHHHHhhccCCCeEEEEcCcchHHHHHHHHhC-CCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccc
Q 026513           61 LLLLRRLIKGGELFLDYGTGSGILGIAAIKFG-AAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNE  139 (237)
Q Consensus        61 ~~~l~~~~~~~~~vLDlG~G~G~~~~~la~~~-~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~  139 (237)
                      ++.+...+++|.+|+|+|||+|.+++.+++.+ ..+|+|+|+++.+++.|++|+..+++.+   ++.+..+|.++.    
T Consensus        12 L~~i~~~v~~g~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~~N~~~~gl~~---~I~~~~gD~l~~----   84 (230)
T 3lec_A           12 LQKVANYVPKGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHGLTS---KIDVRLANGLSA----   84 (230)
T ss_dssp             HHHHHTTSCTTEEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHHHHHHHTTCTT---TEEEEECSGGGG----
T ss_pred             HHHHHHhCCCCCEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCC---cEEEEECchhhc----
Confidence            44556677889999999999999999999875 5689999999999999999999999976   588999998742    


Q ss_pred             cccccccccccccccCCCCCCceeEEE-EeCChHHHHHHHHHHhHhcCCCeEEEEeccCCCCHHHHHHHHhhc-ccccee
Q 026513          140 RVDGVVEDLSSHKIRGISQTEKYDVVI-ANILLNPLLQLADHIVSYAKPGAVVGISGILSEQLPHIINRYSEF-LEDILV  217 (237)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~fD~I~-~n~~~~~~~~~l~~~~~~L~~gG~liis~~~~~~~~~~~~~~~~~-~~~~~~  217 (237)
                                      +.+..+||+|+ ++.....+.+++......|+++|+++++++.  ....+...+.++ |..+..
T Consensus        85 ----------------~~~~~~~D~IviaGmGg~lI~~IL~~~~~~l~~~~~lIlqp~~--~~~~lr~~L~~~Gf~i~~E  146 (230)
T 3lec_A           85 ----------------FEEADNIDTITICGMGGRLIADILNNDIDKLQHVKTLVLQPNN--REDDLRKWLAANDFEIVAE  146 (230)
T ss_dssp             ----------------CCGGGCCCEEEEEEECHHHHHHHHHHTGGGGTTCCEEEEEESS--CHHHHHHHHHHTTEEEEEE
T ss_pred             ----------------cccccccCEEEEeCCchHHHHHHHHHHHHHhCcCCEEEEECCC--ChHHHHHHHHHCCCEEEEE
Confidence                            22234799875 6766677889999999999999999999864  467777777665 665554


Q ss_pred             e---ecCCEE-EEEEEEc
Q 026513          218 S---EMDDWT-CVSGKKK  231 (237)
Q Consensus       218 ~---~~~~w~-~~~~~~~  231 (237)
                      .   +.+.+. .+.+++.
T Consensus       147 ~lv~e~~~~Yeii~~~~~  164 (230)
T 3lec_A          147 DILTENDKRYEILVVKHG  164 (230)
T ss_dssp             EEEEC--CEEEEEEEEEC
T ss_pred             EEEEECCEEEEEEEEEeC
Confidence            3   344444 4555543

>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46

Probab=99.73  E-value=3.1e-17  Score=132.07  Aligned_cols=136  Identities=15%  Similarity=0.117  Sum_probs=100.3

Q ss_pred             CCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccccc
Q 026513           70 GGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDLS  149 (237)
Q Consensus        70 ~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~  149 (237)
                      ++.+|||+|||+|.+++.++..+..+|+++|+|+.+++.|++++..+++.+    +.++++|+.+..             
T Consensus        54 ~~~~vLDlgcG~G~~~~~l~~~~~~~V~~vD~s~~~l~~a~~~~~~~~~~~----v~~~~~D~~~~~-------------  116 (202)
T 2fpo_A           54 VDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATLKAGN----ARVVNSNAMSFL-------------  116 (202)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCS----EEEECSCHHHHH-------------
T ss_pred             CCCeEEEeCCCcCHHHHHHHhcCCCEEEEEECCHHHHHHHHHHHHHcCCCc----EEEEECCHHHHH-------------
Confidence            678999999999999999887777799999999999999999999988753    889999976311             


Q ss_pred             cccccCCCCCCceeEEEEeCChH--HHHHHHHHHhH--hcCCCeEEEEeccCCCCHHHHHHHHhhccccceeeecCCEEE
Q 026513          150 SHKIRGISQTEKYDVVIANILLN--PLLQLADHIVS--YAKPGAVVGISGILSEQLPHIINRYSEFLEDILVSEMDDWTC  225 (237)
Q Consensus       150 ~~~~~~~~~~~~fD~I~~n~~~~--~~~~~l~~~~~--~L~~gG~liis~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~  225 (237)
                           . ...++||+|+++++++  ....+++.+.+  +|+|||++++++.......+.    ...+........+.+..
T Consensus       117 -----~-~~~~~fD~V~~~~p~~~~~~~~~l~~l~~~~~L~pgG~l~i~~~~~~~~~~~----~~~~~~~~~~~~g~~~~  186 (202)
T 2fpo_A          117 -----A-QKGTPHNIVFVDPPFRRGLLEETINLLEDNGWLADEALIYVESEVENGLPTV----PANWSLHREKVAGQVAY  186 (202)
T ss_dssp             -----S-SCCCCEEEEEECCSSSTTTHHHHHHHHHHTTCEEEEEEEEEEEEGGGCSCCC----CTTEEEEEEEEETTEEE
T ss_pred             -----h-hcCCCCCEEEECCCCCCCcHHHHHHHHHhcCccCCCcEEEEEECCCcccccc----CCcceEEeeeccCCEEE
Confidence                 1 1246899999999843  34456677755  599999999986543332211    12244555556677666


Q ss_pred             EEEEEcc
Q 026513          226 VSGKKKR  232 (237)
Q Consensus       226 ~~~~~~~  232 (237)
                      .++++..
T Consensus       187 ~~~~~~~  193 (202)
T 2fpo_A          187 RLYQREA  193 (202)
T ss_dssp             EEEEECC
T ss_pred             EEEEECC
Confidence            6666543

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}

Probab=99.73  E-value=9.7e-17  Score=129.48  Aligned_cols=118  Identities=16%  Similarity=0.216  Sum_probs=97.8

Q ss_pred             ccCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccc
Q 026513           68 IKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVED  147 (237)
Q Consensus        68 ~~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  147 (237)
                      +.++.+|||+|||+|.++..+++. ..+|+|+|+|+.+++.|++++..+++..   ++.++.+|..+.            
T Consensus        53 ~~~~~~vLDlGcG~G~~~~~la~~-~~~v~~vD~s~~~~~~a~~~~~~~g~~~---~v~~~~~d~~~~------------  116 (204)
T 3njr_A           53 PRRGELLWDIGGGSGSVSVEWCLA-GGRAITIEPRADRIENIQKNIDTYGLSP---RMRAVQGTAPAA------------  116 (204)
T ss_dssp             CCTTCEEEEETCTTCHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTCTT---TEEEEESCTTGG------------
T ss_pred             CCCCCEEEEecCCCCHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCC---CEEEEeCchhhh------------
Confidence            467889999999999999999988 6789999999999999999999998872   288889997631            


Q ss_pred             cccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEeccCCCCHHHHHHHHhhc
Q 026513          148 LSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILSEQLPHIINRYSEF  211 (237)
Q Consensus       148 ~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~~~~~~~~~~~~~~~~~  211 (237)
                              +....+||+|+++..... . +++.+.+.|+|||+++++....+...++...+...
T Consensus       117 --------~~~~~~~D~v~~~~~~~~-~-~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~~  170 (204)
T 3njr_A          117 --------LADLPLPEAVFIGGGGSQ-A-LYDRLWEWLAPGTRIVANAVTLESETLLTQLHARH  170 (204)
T ss_dssp             --------GTTSCCCSEEEECSCCCH-H-HHHHHHHHSCTTCEEEEEECSHHHHHHHHHHHHHH
T ss_pred             --------cccCCCCCEEEECCcccH-H-HHHHHHHhcCCCcEEEEEecCcccHHHHHHHHHhC
Confidence                    112357999999986643 3 88999999999999999988777777777777654

>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*

Probab=99.73  E-value=6.2e-16  Score=130.14  Aligned_cols=149  Identities=15%  Similarity=0.206  Sum_probs=110.2

Q ss_pred             eEEeCcccccCCCCchhHHHHHHHHHhhc-cCCCeEEEEcCcchHHHHHHHH-hCCCeEEEEeCCHHHHHHHHHHHHHcC
Q 026513           40 NIILNPGLAFGSGEHATTKLCLLLLRRLI-KGGELFLDYGTGSGILGIAAIK-FGAAMSVGADIDPQAIKSAHQNAALNN  117 (237)
Q Consensus        40 ~~~~~~~~~f~~g~~~~~~~~~~~l~~~~-~~~~~vLDlG~G~G~~~~~la~-~~~~~v~~vD~s~~~i~~a~~~~~~~~  117 (237)
                      .+.+.++..+.   ++.+..+...+...+ .++.+|||+|||+|.++..++. .+..+|+|+|+|+.+++.|++++..++
T Consensus        81 ~~~~~~~~~ip---r~~te~l~~~~l~~~~~~~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~~l~~a~~n~~~~~  157 (276)
T 2b3t_A           81 PLFVSPATLIP---RPDTECLVEQALARLPEQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLA  157 (276)
T ss_dssp             EEECCTTSCCC---CTTHHHHHHHHHHHSCSSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHT
T ss_pred             eEEeCCCCccc---CchHHHHHHHHHHhcccCCCEEEEecCCccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC
Confidence            44555554332   455555555554443 5678999999999999999985 467789999999999999999999888


Q ss_pred             CCCCcceEEeccCccccccccccccccccccccccccCCCCCCceeEEEEeCCh--------------------------
Q 026513          118 IGPKKMKLHLVPDRTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILL--------------------------  171 (237)
Q Consensus       118 ~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~--------------------------  171 (237)
                      +.+    +.++++|+.+.                     .+.++||+|++|+|+                          
T Consensus       158 ~~~----v~~~~~d~~~~---------------------~~~~~fD~Iv~npPy~~~~~~~l~~~v~~~~p~~al~~~~~  212 (276)
T 2b3t_A          158 IKN----IHILQSDWFSA---------------------LAGQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADS  212 (276)
T ss_dssp             CCS----EEEECCSTTGG---------------------GTTCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHH
T ss_pred             CCc----eEEEEcchhhh---------------------cccCCccEEEECCCCCCccccccChhhhhcCcHHHHcCCCc
Confidence            764    88999998631                     124689999999875                          


Q ss_pred             --HHHHHHHHHHhHhcCCCeEEEEeccCCCCHHHHHHHHhhc-ccccee
Q 026513          172 --NPLLQLADHIVSYAKPGAVVGISGILSEQLPHIINRYSEF-LEDILV  217 (237)
Q Consensus       172 --~~~~~~l~~~~~~L~~gG~liis~~~~~~~~~~~~~~~~~-~~~~~~  217 (237)
                        ..+..++..+.++|+|||++++..- ..+..++...+... |..++.
T Consensus       213 g~~~~~~~l~~~~~~LkpgG~l~~~~~-~~~~~~~~~~l~~~Gf~~v~~  260 (276)
T 2b3t_A          213 GMADIVHIIEQSRNALVSGGFLLLEHG-WQQGEAVRQAFILAGYHDVET  260 (276)
T ss_dssp             HTHHHHHHHHHHGGGEEEEEEEEEECC-SSCHHHHHHHHHHTTCTTCCE
T ss_pred             HHHHHHHHHHHHHHhcCCCCEEEEEEC-chHHHHHHHHHHHCCCcEEEE
Confidence              2346788999999999999999632 33456666666554 665554

>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}

Probab=99.72  E-value=9e-17  Score=142.17  Aligned_cols=142  Identities=18%  Similarity=0.187  Sum_probs=112.2

Q ss_pred             ceeEEeCcccccCCCCchhHHHHHHHHHhhccCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcC
Q 026513           38 ATNIILNPGLAFGSGEHATTKLCLLLLRRLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNN  117 (237)
Q Consensus        38 ~~~~~~~~~~~f~~g~~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~  117 (237)
                      ...+.+++...+.+|.....+.....+... .++.+|||+|||+|.+++.++..|..+|+|+|+|+.+++.|++|+..++
T Consensus       189 g~~f~v~~~~~~~tgff~~~~~~~~~l~~~-~~~~~VLDl~cG~G~~sl~la~~g~~~V~~vD~s~~al~~a~~n~~~ng  267 (396)
T 3c0k_A          189 GMKLLVDIQHGHKTGYYLDQRDSRLATRRY-VENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNK  267 (396)
T ss_dssp             TEEEEECTTTSSTTSSCGGGHHHHHHHHHH-CTTCEEEEESCTTCSHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTT
T ss_pred             CEEEEEeccccccCCcCcCHHHHHHHHHHh-hCCCeEEEeeccCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcC
Confidence            456777777666677777666665565554 6788999999999999999999888899999999999999999999998


Q ss_pred             C-CCCcceEEeccCccccccccccccccccccccccccCCCCCCceeEEEEeCCh------------HHHHHHHHHHhHh
Q 026513          118 I-GPKKMKLHLVPDRTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILL------------NPLLQLADHIVSY  184 (237)
Q Consensus       118 ~-~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~------------~~~~~~l~~~~~~  184 (237)
                      + ..   ++.++++|+.+...         .       ......+||+|++|||.            ..+..++..+.+.
T Consensus       268 l~~~---~v~~~~~D~~~~~~---------~-------~~~~~~~fD~Ii~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~  328 (396)
T 3c0k_A          268 LDLS---KAEFVRDDVFKLLR---------T-------YRDRGEKFDVIVMDPPKFVENKSQLMGACRGYKDINMLAIQL  328 (396)
T ss_dssp             CCGG---GEEEEESCHHHHHH---------H-------HHHTTCCEEEEEECCSSTTTCSSSSSCCCTHHHHHHHHHHHT
T ss_pred             CCcc---ceEEEECCHHHHHH---------H-------HHhcCCCCCEEEECCCCCCCChhHHHHHHHHHHHHHHHHHHh
Confidence            8 52   38899999864210         0       00013589999999987            5677889999999


Q ss_pred             cCCCeEEEEeccCCC
Q 026513          185 AKPGAVVGISGILSE  199 (237)
Q Consensus       185 L~~gG~liis~~~~~  199 (237)
                      |+|||.+++++....
T Consensus       329 LkpgG~l~~~~~~~~  343 (396)
T 3c0k_A          329 LNEGGILLTFSCSGL  343 (396)
T ss_dssp             EEEEEEEEEEECCTT
T ss_pred             cCCCcEEEEEeCCCc
Confidence            999999999876433

>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*

Probab=99.72  E-value=1.6e-16  Score=134.18  Aligned_cols=126  Identities=18%  Similarity=0.249  Sum_probs=99.8

Q ss_pred             HHHHHHhhccCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccc
Q 026513           60 CLLLLRRLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNE  139 (237)
Q Consensus        60 ~~~~l~~~~~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~  139 (237)
                      ....+....++|.+|||+|||+|.+++.+++.+..+|+|+|+|+.+++.|++|+..+++.+   ++.++++|+.+     
T Consensus       115 ~~~~l~~~~~~~~~VLDlgcG~G~~~~~la~~~~~~V~~vD~s~~~~~~a~~n~~~n~~~~---~v~~~~~D~~~-----  186 (278)
T 2frn_A          115 ERVRMAKVAKPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVED---RMSAYNMDNRD-----  186 (278)
T ss_dssp             HHHHHHHHCCTTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTT---TEEEECSCTTT-----
T ss_pred             HHHHHHHhCCCCCEEEEecccCCHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHcCCCc---eEEEEECCHHH-----
Confidence            3344444567799999999999999999998876689999999999999999999999875   48899999873     


Q ss_pred             cccccccccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEeccC------CCCHHHHHHHHhh
Q 026513          140 RVDGVVEDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGIL------SEQLPHIINRYSE  210 (237)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~~~------~~~~~~~~~~~~~  210 (237)
                                      +....+||+|++++|... ..++..+.++|+|||.+++..+.      ......+...+..
T Consensus       187 ----------------~~~~~~fD~Vi~~~p~~~-~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~i~~~~~~  246 (278)
T 2frn_A          187 ----------------FPGENIADRILMGYVVRT-HEFIPKALSIAKDGAIIHYHNTVPEKLMPREPFETFKRITKE  246 (278)
T ss_dssp             ----------------CCCCSCEEEEEECCCSSG-GGGHHHHHHHEEEEEEEEEEEEEEGGGTTTTTHHHHHHHHHH
T ss_pred             ----------------hcccCCccEEEECCchhH-HHHHHHHHHHCCCCeEEEEEEeeccccccccHHHHHHHHHHH
Confidence                            222578999999998543 56788899999999999996443      3444555555544

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}

Probab=99.72  E-value=5.1e-16  Score=123.76  Aligned_cols=118  Identities=14%  Similarity=0.151  Sum_probs=92.9

Q ss_pred             HHHHHHHHhhccCCCeEEEEcCcchHHHHHHHHh--CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccc
Q 026513           58 KLCLLLLRRLIKGGELFLDYGTGSGILGIAAIKF--GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTA  135 (237)
Q Consensus        58 ~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~la~~--~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~  135 (237)
                      ......+...++++.+|||+|||+|.++..+++.  +..+|+|+|+++.+++.|++++..+++..   ++.++++|+.+.
T Consensus        10 ~~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~---~v~~~~~d~~~~   86 (197)
T 3eey_A           10 GQSHDYIKMFVKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLID---RVTLIKDGHQNM   86 (197)
T ss_dssp             HHHHHHHHHHCCTTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTCGG---GEEEECSCGGGG
T ss_pred             HHHHHHHHhcCCCCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCC---CeEEEECCHHHH
Confidence            3334444445678899999999999999999876  45689999999999999999999888733   488999997631


Q ss_pred             cccccccccccccccccccCCCCCCceeEEEEeCCh------------HHHHHHHHHHhHhcCCCeEEEEeccC
Q 026513          136 SMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILL------------NPLLQLADHIVSYAKPGAVVGISGIL  197 (237)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~------------~~~~~~l~~~~~~L~~gG~liis~~~  197 (237)
                      .                  .. .+++||+|++++++            .....++..+.++|+|||.+++..+.
T Consensus        87 ~------------------~~-~~~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~  141 (197)
T 3eey_A           87 D------------------KY-IDCPVKAVMFNLGYLPSGDHSISTRPETTIQALSKAMELLVTGGIITVVIYY  141 (197)
T ss_dssp             G------------------GT-CCSCEEEEEEEESBCTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred             h------------------hh-ccCCceEEEEcCCcccCcccccccCcccHHHHHHHHHHhCcCCCEEEEEEcc
Confidence            1                  11 24789999999865            12346899999999999999998654

>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}

Probab=99.72  E-value=1.4e-16  Score=140.79  Aligned_cols=147  Identities=16%  Similarity=0.173  Sum_probs=115.4

Q ss_pred             CceeEEeCcccccCCCCchhHHHHHHHHHhhccCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHc
Q 026513           37 QATNIILNPGLAFGSGEHATTKLCLLLLRRLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALN  116 (237)
Q Consensus        37 ~~~~~~~~~~~~f~~g~~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~  116 (237)
                      ....+.+++...+.+|.....+....++....++|.+|||+|||+|.+++.++..|.. |+++|+|+.+++.|++|+..+
T Consensus       181 ~g~~f~vd~~~~~~tG~f~dqr~~r~~l~~~~~~g~~VLDlg~GtG~~sl~~a~~ga~-V~avDis~~al~~a~~n~~~n  259 (393)
T 4dmg_A          181 DGLRFPIPLALAQKTGYYLDQRENRRLFEAMVRPGERVLDVYSYVGGFALRAARKGAY-ALAVDKDLEALGVLDQAALRL  259 (393)
T ss_dssp             TTEEEEEETTTCCTTSSCGGGHHHHHHHHTTCCTTCEEEEESCTTTHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHHHH
T ss_pred             CCEEEEEechhccccCcCCCHHHHHHHHHHHhcCCCeEEEcccchhHHHHHHHHcCCe-EEEEECCHHHHHHHHHHHHHh
Confidence            3467777777788888888888888888777777999999999999999999988766 999999999999999999999


Q ss_pred             CCCCCcceEEeccCccccccccccccccccccccccccCCCCCCceeEEEEeCCh------------HHHHHHHHHHhHh
Q 026513          117 NIGPKKMKLHLVPDRTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILL------------NPLLQLADHIVSY  184 (237)
Q Consensus       117 ~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~------------~~~~~~l~~~~~~  184 (237)
                      ++..     .+.++|+++..                 ...  .+.||+|++|||.            ..+.+++..+.++
T Consensus       260 g~~~-----~~~~~D~~~~l-----------------~~~--~~~fD~Ii~dpP~f~~~~~~~~~~~~~~~~ll~~a~~~  315 (393)
T 4dmg_A          260 GLRV-----DIRHGEALPTL-----------------RGL--EGPFHHVLLDPPTLVKRPEELPAMKRHLVDLVREALRL  315 (393)
T ss_dssp             TCCC-----EEEESCHHHHH-----------------HTC--CCCEEEEEECCCCCCSSGGGHHHHHHHHHHHHHHHHHT
T ss_pred             CCCC-----cEEEccHHHHH-----------------HHh--cCCCCEEEECCCcCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence            9873     24478876311                 111  2349999999985            3446788999999


Q ss_pred             cCCCeEEEE-eccCCCCHHHHHHHH
Q 026513          185 AKPGAVVGI-SGILSEQLPHIINRY  208 (237)
Q Consensus       185 L~~gG~lii-s~~~~~~~~~~~~~~  208 (237)
                      |+|||.|++ +|.......++...+
T Consensus       316 LkpGG~Lv~~s~s~~~~~~~f~~~v  340 (393)
T 4dmg_A          316 LAEEGFLWLSSCSYHLRLEDLLEVA  340 (393)
T ss_dssp             EEEEEEEEEEECCTTSCHHHHHHHH
T ss_pred             cCCCCEEEEEECCCCCCHHHHHHHH
Confidence            999999995 455555555544444

>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}

Probab=99.72  E-value=1.7e-16  Score=131.13  Aligned_cols=146  Identities=10%  Similarity=0.062  Sum_probs=112.7

Q ss_pred             HHHHHhhccCCCeEEEEcCcchHHHHHHHHhC-CCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccc
Q 026513           61 LLLLRRLIKGGELFLDYGTGSGILGIAAIKFG-AAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNE  139 (237)
Q Consensus        61 ~~~l~~~~~~~~~vLDlG~G~G~~~~~la~~~-~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~  139 (237)
                      ++.+...+++|.+|||+|||+|.+++.+++.+ ..+|+|+|+++.+++.|++|+..+++.+   ++.+..+|.++.    
T Consensus        12 L~~i~~~v~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~---~I~v~~gD~l~~----   84 (244)
T 3gnl_A           12 LEKVASYITKNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGLTE---QIDVRKGNGLAV----   84 (244)
T ss_dssp             HHHHHTTCCSSEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTT---TEEEEECSGGGG----
T ss_pred             HHHHHHhCCCCCEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCc---eEEEEecchhhc----
Confidence            45556677889999999999999999999875 5689999999999999999999999976   588999998742    


Q ss_pred             cccccccccccccccCCCCCCceeEEE-EeCChHHHHHHHHHHhHhcCCCeEEEEeccCCCCHHHHHHHHhhc-ccccee
Q 026513          140 RVDGVVEDLSSHKIRGISQTEKYDVVI-ANILLNPLLQLADHIVSYAKPGAVVGISGILSEQLPHIINRYSEF-LEDILV  217 (237)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~fD~I~-~n~~~~~~~~~l~~~~~~L~~gG~liis~~~~~~~~~~~~~~~~~-~~~~~~  217 (237)
                                      +.+..+||+|+ ++..-..+.+++......|+++++++++...  ....+...+.+. |..+..
T Consensus        85 ----------------~~~~~~~D~IviagmGg~lI~~IL~~~~~~L~~~~~lIlq~~~--~~~~lr~~L~~~Gf~i~~E  146 (244)
T 3gnl_A           85 ----------------IEKKDAIDTIVIAGMGGTLIRTILEEGAAKLAGVTKLILQPNI--AAWQLREWSEQNNWLITSE  146 (244)
T ss_dssp             ----------------CCGGGCCCEEEEEEECHHHHHHHHHHTGGGGTTCCEEEEEESS--CHHHHHHHHHHHTEEEEEE
T ss_pred             ----------------cCccccccEEEEeCCchHHHHHHHHHHHHHhCCCCEEEEEcCC--ChHHHHHHHHHCCCEEEEE
Confidence                            22233699876 5666677889999999999999999999864  567777777665 665433


Q ss_pred             ---eecCCE-EEEEEEEc
Q 026513          218 ---SEMDDW-TCVSGKKK  231 (237)
Q Consensus       218 ---~~~~~w-~~~~~~~~  231 (237)
                         .+.+.+ ..+..++.
T Consensus       147 ~lv~e~~k~Yeii~~~~~  164 (244)
T 3gnl_A          147 AILREDNKVYEIMVLAPS  164 (244)
T ss_dssp             EEEEETTEEEEEEEEEEC
T ss_pred             EEEEECCEEEEEEEEEeC
Confidence               234443 34555554

>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*

Probab=99.72  E-value=2e-16  Score=139.53  Aligned_cols=154  Identities=12%  Similarity=0.052  Sum_probs=112.4

Q ss_pred             CceeEEeCcccccCCCCchhHHHHHHHHHhhccCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHc
Q 026513           37 QATNIILNPGLAFGSGEHATTKLCLLLLRRLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALN  116 (237)
Q Consensus        37 ~~~~~~~~~~~~f~~g~~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~  116 (237)
                      ....+.+++.....++....++....++...+.++.+|||+|||+|.+++.++..++.+|+++|+|+.+++.|++|+..+
T Consensus       179 ~g~~f~v~~~~~~~t~ff~~~~~~~~~~~~~~~~~~~VLDl~cGtG~~sl~la~~ga~~V~~vD~s~~al~~A~~N~~~n  258 (385)
T 2b78_A          179 NGISYNVFLNDGLMTGIFLDQRQVRNELINGSAAGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEAN  258 (385)
T ss_dssp             TTEEEEECSSSSSCCSSCGGGHHHHHHHHHTTTBTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHHHT
T ss_pred             CCEEEEEeccccccCCcCCcHHHHHHHHHHHhcCCCeEEEEeeccCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHc
Confidence            45677788775555555544444444554443678899999999999999999887889999999999999999999999


Q ss_pred             CCCCCcceEEeccCccccccccccccccccccccccccCC-CCCCceeEEEEeCChH------------HHHHHHHHHhH
Q 026513          117 NIGPKKMKLHLVPDRTFTASMNERVDGVVEDLSSHKIRGI-SQTEKYDVVIANILLN------------PLLQLADHIVS  183 (237)
Q Consensus       117 ~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~fD~I~~n~~~~------------~~~~~l~~~~~  183 (237)
                      ++...  ++.++++|+.+..                 ... ....+||+|++|||..            .+.+++..+.+
T Consensus       259 ~~~~~--~v~~~~~D~~~~l-----------------~~~~~~~~~fD~Ii~DPP~~~~~~~~~~~~~~~~~~ll~~~~~  319 (385)
T 2b78_A          259 HLDMA--NHQLVVMDVFDYF-----------------KYARRHHLTYDIIIIDPPSFARNKKEVFSVSKDYHKLIRQGLE  319 (385)
T ss_dssp             TCCCT--TEEEEESCHHHHH-----------------HHHHHTTCCEEEEEECCCCC-----CCCCHHHHHHHHHHHHHH
T ss_pred             CCCcc--ceEEEECCHHHHH-----------------HHHHHhCCCccEEEECCCCCCCChhhHHHHHHHHHHHHHHHHH
Confidence            98620  1788999986311                 011 0135899999999862            23456788899


Q ss_pred             hcCCCeEEEEeccCCCC-HHHHHHHHh
Q 026513          184 YAKPGAVVGISGILSEQ-LPHIINRYS  209 (237)
Q Consensus       184 ~L~~gG~liis~~~~~~-~~~~~~~~~  209 (237)
                      +|+|||.+++++..... ...+...+.
T Consensus       320 ~L~pgG~l~~~~~~~~~~~~~~~~~i~  346 (385)
T 2b78_A          320 ILSENGLIIASTNAANMTVSQFKKQIE  346 (385)
T ss_dssp             TEEEEEEEEEEECCTTSCHHHHHHHHH
T ss_pred             hcCCCcEEEEEeCCCcCCHHHHHHHHH
Confidence            99999999998765443 344444444

>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}

Probab=99.72  E-value=1.2e-16  Score=128.77  Aligned_cols=101  Identities=20%  Similarity=0.194  Sum_probs=86.5

Q ss_pred             CeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccccccc
Q 026513           72 ELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDLSSH  151 (237)
Q Consensus        72 ~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~  151 (237)
                      .+|||+|||+|.++..+++.+..+++|+|+|+.+++.|++++...++..   ++.++++|+.+.                
T Consensus        45 ~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~---~~~~~~~d~~~~----------------  105 (219)
T 3dlc_A           45 GTCIDIGSGPGALSIALAKQSDFSIRALDFSKHMNEIALKNIADANLND---RIQIVQGDVHNI----------------  105 (219)
T ss_dssp             EEEEEETCTTSHHHHHHHHHSEEEEEEEESCHHHHHHHHHHHHHTTCTT---TEEEEECBTTBC----------------
T ss_pred             CEEEEECCCCCHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHhccccC---ceEEEEcCHHHC----------------
Confidence            3999999999999999998766789999999999999999999888764   488889987631                


Q ss_pred             cccCCCCCCceeEEEEeCChHHH---HHHHHHHhHhcCCCeEEEEec
Q 026513          152 KIRGISQTEKYDVVIANILLNPL---LQLADHIVSYAKPGAVVGISG  195 (237)
Q Consensus       152 ~~~~~~~~~~fD~I~~n~~~~~~---~~~l~~~~~~L~~gG~liis~  195 (237)
                          ..++++||+|+++.+++++   ..+++.+.++|+|||.+++++
T Consensus       106 ----~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~  148 (219)
T 3dlc_A          106 ----PIEDNYADLIVSRGSVFFWEDVATAFREIYRILKSGGKTYIGG  148 (219)
T ss_dssp             ----SSCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ----CCCcccccEEEECchHhhccCHHHHHHHHHHhCCCCCEEEEEe
Confidence                1235799999999988765   678999999999999999974

>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51

Probab=99.72  E-value=1.9e-16  Score=137.09  Aligned_cols=154  Identities=12%  Similarity=0.081  Sum_probs=114.4

Q ss_pred             CceeEEeCcccccCCCCchhHHHHHHHHHhhc---cCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHH
Q 026513           37 QATNIILNPGLAFGSGEHATTKLCLLLLRRLI---KGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNA  113 (237)
Q Consensus        37 ~~~~~~~~~~~~f~~g~~~~~~~~~~~l~~~~---~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~  113 (237)
                      ....+.+++...+.+|..+.++....++...+   .++.+|||+|||+|.+++.++..+. +|+++|+|+.+++.|++|+
T Consensus       117 ~g~~f~v~~~~~~~tg~f~dq~~~~~~l~~~~~~~~~~~~VLDlgcGtG~~sl~la~~ga-~V~~VD~s~~al~~a~~n~  195 (332)
T 2igt_A          117 LGVEFLGRFTAFRHVGVFPEQIVHWEWLKNAVETADRPLKVLNLFGYTGVASLVAAAAGA-EVTHVDASKKAIGWAKENQ  195 (332)
T ss_dssp             TTEEEEEECCSSSCCSCCGGGHHHHHHHHHHHHHSSSCCEEEEETCTTCHHHHHHHHTTC-EEEEECSCHHHHHHHHHHH
T ss_pred             CCEEEEEecCccccceechHHHHHHHHHHHHHHhcCCCCcEEEcccccCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHH
Confidence            45677788887888888887776665555443   3678999999999999999998876 8999999999999999999


Q ss_pred             HHcCCCCCcceEEeccCccccccccccccccccccccccccCCCCCCceeEEEEeCCh-------------HHHHHHHHH
Q 026513          114 ALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILL-------------NPLLQLADH  180 (237)
Q Consensus       114 ~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~-------------~~~~~~l~~  180 (237)
                      ..+++.+.  ++.++++|+++...         .       ......+||+|++|||.             ..+..++..
T Consensus       196 ~~~gl~~~--~v~~i~~D~~~~l~---------~-------~~~~~~~fD~Ii~dPP~~~~~~~~~~~~~~~~~~~ll~~  257 (332)
T 2igt_A          196 VLAGLEQA--PIRWICEDAMKFIQ---------R-------EERRGSTYDIILTDPPKFGRGTHGEVWQLFDHLPLMLDI  257 (332)
T ss_dssp             HHHTCTTS--CEEEECSCHHHHHH---------H-------HHHHTCCBSEEEECCCSEEECTTCCEEEHHHHHHHHHHH
T ss_pred             HHcCCCcc--ceEEEECcHHHHHH---------H-------HHhcCCCceEEEECCccccCCchHHHHHHHHHHHHHHHH
Confidence            99987641  27788999864210         0       00013589999999983             234678899


Q ss_pred             HhHhcCCCeEEEEeccC--CCCHHHHHHHHh
Q 026513          181 IVSYAKPGAVVGISGIL--SEQLPHIINRYS  209 (237)
Q Consensus       181 ~~~~L~~gG~liis~~~--~~~~~~~~~~~~  209 (237)
                      +.++|+|||.+++.+..  ......+...+.
T Consensus       258 ~~~~LkpgG~lli~~~~~~~~~~~~~~~~l~  288 (332)
T 2igt_A          258 CREILSPKALGLVLTAYSIRASFYSMHELMR  288 (332)
T ss_dssp             HHHTBCTTCCEEEEEECCTTSCHHHHHHHHH
T ss_pred             HHHhcCcCcEEEEEECCCCCCCHHHHHHHHH
Confidence            99999999998876443  223444544444

>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46

Probab=99.72  E-value=6.6e-17  Score=126.80  Aligned_cols=134  Identities=16%  Similarity=0.097  Sum_probs=98.1

Q ss_pred             cCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccccc
Q 026513           69 KGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDL  148 (237)
Q Consensus        69 ~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~  148 (237)
                      .++.+|||+|||+|.++..+++.+..+|+|+|+|+.+++.|++++..+++.+   ++.++.+|+.+..            
T Consensus        30 ~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~---~~~~~~~d~~~~~------------   94 (177)
T 2esr_A           30 FNGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKAEN---RFTLLKMEAERAI------------   94 (177)
T ss_dssp             CCSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHTTTCGG---GEEEECSCHHHHH------------
T ss_pred             cCCCeEEEeCCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHcCCCC---ceEEEECcHHHhH------------
Confidence            4678999999999999999998877899999999999999999999887753   4888899976311            


Q ss_pred             ccccccCCCCCCceeEEEEeCChH--HHHHHHHHHh--HhcCCCeEEEEeccCCCCHHHHHHHHhhccccceeeecCCEE
Q 026513          149 SSHKIRGISQTEKYDVVIANILLN--PLLQLADHIV--SYAKPGAVVGISGILSEQLPHIINRYSEFLEDILVSEMDDWT  224 (237)
Q Consensus       149 ~~~~~~~~~~~~~fD~I~~n~~~~--~~~~~l~~~~--~~L~~gG~liis~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~  224 (237)
                           ..  ...+||+|+++++++  ...+++..+.  ++|+|||.+++++.......+    ....|........+...
T Consensus        95 -----~~--~~~~fD~i~~~~~~~~~~~~~~~~~l~~~~~L~~gG~l~~~~~~~~~~~~----~~~~~~~~~~~~yg~~~  163 (177)
T 2esr_A           95 -----DC--LTGRFDLVFLDPPYAKETIVATIEALAAKNLLSEQVMVVCETDKTVLLPK----EIATLGIWKEKIYGISK  163 (177)
T ss_dssp             -----HH--BCSCEEEEEECCSSHHHHHHHHHHHHHHTTCEEEEEEEEEEEETTCCCCS----EETTEEEEEEEEETTEE
T ss_pred             -----Hh--hcCCCCEEEECCCCCcchHHHHHHHHHhCCCcCCCcEEEEEECCcccccc----ccCceEEEEeeecCcEE
Confidence                 01  135799999999863  3456677776  899999999998665443322    11224444444455554


Q ss_pred             EEEE
Q 026513          225 CVSG  228 (237)
Q Consensus       225 ~~~~  228 (237)
                      ....
T Consensus       164 ~~~~  167 (177)
T 2esr_A          164 VTVY  167 (177)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            4433

>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}

Probab=99.71  E-value=1.3e-16  Score=134.38  Aligned_cols=132  Identities=14%  Similarity=0.170  Sum_probs=103.5

Q ss_pred             ceeEEeCcccccCCCCchhHHHHHHHHHhhccCCCeEEEEcCcchHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHHc
Q 026513           38 ATNIILNPGLAFGSGEHATTKLCLLLLRRLIKGGELFLDYGTGSGILGIAAIKF-GAAMSVGADIDPQAIKSAHQNAALN  116 (237)
Q Consensus        38 ~~~~~~~~~~~f~~g~~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~la~~-~~~~v~~vD~s~~~i~~a~~~~~~~  116 (237)
                      ...+.+++...|...........   +...+.++.+|||+|||+|.+++.+++. +..+|+|+|+++.+++.|++|+..+
T Consensus        90 g~~f~~~~~~~f~~~~~~~e~~~---~~~~~~~~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~~av~~a~~n~~~n  166 (272)
T 3a27_A           90 GCLFKLDVAKIMWSQGNIEERKR---MAFISNENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCENIKLN  166 (272)
T ss_dssp             TEEEEEETTTSCCCGGGHHHHHH---HHTSCCTTCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHHHHHHHHHHHT
T ss_pred             CEEEEEechhEEECCCchHHHHH---HHHhcCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHc
Confidence            45677777755544333333322   2233678899999999999999999977 5678999999999999999999999


Q ss_pred             CCCCCcceEEeccCccccccccccccccccccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEecc
Q 026513          117 NIGPKKMKLHLVPDRTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGI  196 (237)
Q Consensus       117 ~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~~  196 (237)
                      ++.+    +.++++|+.+                     ....++||+|++++|. ....++..+.+.|+|||.++++|+
T Consensus       167 ~l~~----~~~~~~d~~~---------------------~~~~~~~D~Vi~d~p~-~~~~~l~~~~~~LkpgG~l~~s~~  220 (272)
T 3a27_A          167 KLNN----VIPILADNRD---------------------VELKDVADRVIMGYVH-KTHKFLDKTFEFLKDRGVIHYHET  220 (272)
T ss_dssp             TCSS----EEEEESCGGG---------------------CCCTTCEEEEEECCCS-SGGGGHHHHHHHEEEEEEEEEEEE
T ss_pred             CCCC----EEEEECChHH---------------------cCccCCceEEEECCcc-cHHHHHHHHHHHcCCCCEEEEEEc
Confidence            9875    7789999873                     1114689999999987 445678889999999999999988


Q ss_pred             CC
Q 026513          197 LS  198 (237)
Q Consensus       197 ~~  198 (237)
                      ..
T Consensus       221 ~~  222 (272)
T 3a27_A          221 VA  222 (272)
T ss_dssp             EE
T ss_pred             Cc
Confidence            64

>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15

Probab=99.71  E-value=9.5e-17  Score=134.29  Aligned_cols=148  Identities=11%  Similarity=0.081  Sum_probs=103.0

Q ss_pred             cCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCC-------------------------cc
Q 026513           69 KGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPK-------------------------KM  123 (237)
Q Consensus        69 ~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~-------------------------~~  123 (237)
                      .+|.+|||+|||+|.++..++..++.+|+|+|+|+.+++.|++++..+....+                         ..
T Consensus        54 ~~g~~vLDiGCG~G~~~~~~~~~~~~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~~~  133 (263)
T 2a14_A           54 LQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLRA  133 (263)
T ss_dssp             CCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHHH
T ss_pred             CCCceEEEeCCCccHHHHHHHHhhhcceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHHHHHh
Confidence            46789999999999988877777777899999999999999998765432110                         00


Q ss_pred             eEE-eccCccccccccccccccccccccccccCCCCCCceeEEEEeCChHHH-------HHHHHHHhHhcCCCeEEEEec
Q 026513          124 KLH-LVPDRTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLNPL-------LQLADHIVSYAKPGAVVGISG  195 (237)
Q Consensus       124 ~v~-~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~~~~-------~~~l~~~~~~L~~gG~liis~  195 (237)
                      .+. ++++|+.+..               .+ .....++||+|+++..++++       ..+++++.++|||||++++++
T Consensus       134 ~i~~~~~~D~~~~~---------------~~-~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~i~r~LKPGG~li~~~  197 (263)
T 2a14_A          134 AVKRVLKCDVHLGN---------------PL-APAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTV  197 (263)
T ss_dssp             HEEEEEECCTTSSS---------------TT-TTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred             hhheEEeccccCCC---------------CC-CccccCCCCEeeehHHHHHhcCCHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence            122 5666665310               00 00124689999999988764       367899999999999999986


Q ss_pred             cCCC---------------CHHHHHHHHhhc-cccceeeecC-----------CEEEEEEEEcc
Q 026513          196 ILSE---------------QLPHIINRYSEF-LEDILVSEMD-----------DWTCVSGKKKR  232 (237)
Q Consensus       196 ~~~~---------------~~~~~~~~~~~~-~~~~~~~~~~-----------~w~~~~~~~~~  232 (237)
                      ....               ...++...+... |+.++.....           ....++++|.+
T Consensus       198 ~~~~~~~~~g~~~~~~~~~~~~~l~~~l~~aGF~i~~~~~~~~~~~~~~~~~~~~~~~~a~K~~  261 (263)
T 2a14_A          198 TLRLPSYMVGKREFSCVALEKGEVEQAVLDAGFDIEQLLHSPQSYSVTNAANNGVCCIVARKKP  261 (263)
T ss_dssp             ESSCCEEEETTEEEECCCCCHHHHHHHHHHTTEEEEEEEEECCCCCTTTCCCCCEEEEEEEECC
T ss_pred             eecCccceeCCeEeeccccCHHHHHHHHHHCCCEEEEEeecccccccccCCCCceEEEEEEecC
Confidence            4322               456777777654 7666654422           44566777754

>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51

Probab=99.71  E-value=1.7e-16  Score=140.36  Aligned_cols=138  Identities=22%  Similarity=0.317  Sum_probs=107.4

Q ss_pred             ceeEEeCcccccCCCCchhHHHHHHHHHhhccCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcC
Q 026513           38 ATNIILNPGLAFGSGEHATTKLCLLLLRRLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNN  117 (237)
Q Consensus        38 ~~~~~~~~~~~f~~g~~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~  117 (237)
                      ...+.+++ ..+.+|.....+.....+....+++.+|||+|||+|.+++.++..|..+|+|+|+|+.+++.|++|+..++
T Consensus       186 g~~~~~~~-~~~~tg~f~~~~~~~~~~~~~~~~~~~VLDl~~G~G~~~~~la~~g~~~v~~vD~s~~~l~~a~~n~~~n~  264 (396)
T 2as0_A          186 RAKFIVDM-RGQKTGFFLDQRENRLALEKWVQPGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNG  264 (396)
T ss_dssp             TEEEEEES-SSSSSCCCSTTHHHHHHHGGGCCTTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTT
T ss_pred             CEEEEEec-cccccCccCCHHHHHHHHHHHhhCCCeEEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcC
Confidence            45666776 55555666555555555555544789999999999999999998888899999999999999999999998


Q ss_pred             CCCCcceEEeccCccccccccccccccccccccccccCC-CCCCceeEEEEeCCh------------HHHHHHHHHHhHh
Q 026513          118 IGPKKMKLHLVPDRTFTASMNERVDGVVEDLSSHKIRGI-SQTEKYDVVIANILL------------NPLLQLADHIVSY  184 (237)
Q Consensus       118 ~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~fD~I~~n~~~------------~~~~~~l~~~~~~  184 (237)
                      +..   ++.++++|+.+..                 ..+ ....+||+|++|||.            ..+..++..+.++
T Consensus       265 ~~~---~v~~~~~d~~~~~-----------------~~~~~~~~~fD~Vi~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~  324 (396)
T 2as0_A          265 VED---RMKFIVGSAFEEM-----------------EKLQKKGEKFDIVVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNL  324 (396)
T ss_dssp             CGG---GEEEEESCHHHHH-----------------HHHHHTTCCEEEEEECCCCSCSSGGGHHHHHHHHHHHHHHHHTT
T ss_pred             CCc---cceEEECCHHHHH-----------------HHHHhhCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence            863   3888999986321                 000 014689999999986            4556788999999


Q ss_pred             cCCCeEEEEecc
Q 026513          185 AKPGAVVGISGI  196 (237)
Q Consensus       185 L~~gG~liis~~  196 (237)
                      |+|||.+++++.
T Consensus       325 LkpgG~lv~~~~  336 (396)
T 2as0_A          325 VKDGGILVTCSC  336 (396)
T ss_dssp             EEEEEEEEEEEC
T ss_pred             cCCCcEEEEEEC
Confidence            999999888744

>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*

Probab=99.70  E-value=2.9e-16  Score=133.04  Aligned_cols=143  Identities=22%  Similarity=0.373  Sum_probs=105.3

Q ss_pred             eeEEeCcccccCCCCchhHHHHHHHHHhhc--cCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHc
Q 026513           39 TNIILNPGLAFGSGEHATTKLCLLLLRRLI--KGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALN  116 (237)
Q Consensus        39 ~~~~~~~~~~f~~g~~~~~~~~~~~l~~~~--~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~  116 (237)
                      ..+.++|+..+   ..+.+..+.+.+...+  .++.+|||+|||+|.+++.++..+..+|+|+|+|+.+++.|++|+..+
T Consensus        93 ~~~~v~~~~li---pr~~te~lv~~~l~~~~~~~~~~vLDlG~GsG~~~~~la~~~~~~v~~vDis~~al~~A~~n~~~~  169 (284)
T 1nv8_A           93 LSFLVEEGVFV---PRPETEELVELALELIRKYGIKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAERH  169 (284)
T ss_dssp             EEEECCTTSCC---CCTTHHHHHHHHHHHHHHHTCCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHHHHHHHT
T ss_pred             eEEEeCCCcee---cChhHHHHHHHHHHHhcccCCCEEEEEeCchhHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHc
Confidence            45566666443   2455555555544432  367899999999999999998766678999999999999999999999


Q ss_pred             CCCCCcceEEeccCccccccccccccccccccccccccCCCCCCce---eEEEEeCChHHH-------------------
Q 026513          117 NIGPKKMKLHLVPDRTFTASMNERVDGVVEDLSSHKIRGISQTEKY---DVVIANILLNPL-------------------  174 (237)
Q Consensus       117 ~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f---D~I~~n~~~~~~-------------------  174 (237)
                      ++.+   ++.++++|+.+.                    .  .++|   |+|++|||+...                   
T Consensus       170 ~l~~---~v~~~~~D~~~~--------------------~--~~~f~~~D~IvsnPPyi~~~~~l~~~v~~ep~~al~~~  224 (284)
T 1nv8_A          170 GVSD---RFFVRKGEFLEP--------------------F--KEKFASIEMILSNPPYVKSSAHLPKDVLFEPPEALFGG  224 (284)
T ss_dssp             TCTT---SEEEEESSTTGG--------------------G--GGGTTTCCEEEECCCCBCGGGSCTTSCCCSCHHHHBCT
T ss_pred             CCCC---ceEEEECcchhh--------------------c--ccccCCCCEEEEcCCCCCcccccChhhccCcHHHhcCC
Confidence            8875   488999998731                    1  2467   999999885321                   


Q ss_pred             ---HHHHHHHh-HhcCCCeEEEEeccCCCCHHHHHHHHhh
Q 026513          175 ---LQLADHIV-SYAKPGAVVGISGILSEQLPHIINRYSE  210 (237)
Q Consensus       175 ---~~~l~~~~-~~L~~gG~liis~~~~~~~~~~~~~~~~  210 (237)
                         ..++..+. +.|+|||.+++. +...+..++...+..
T Consensus       225 ~dgl~~~~~i~~~~l~pgG~l~~e-~~~~q~~~v~~~~~~  263 (284)
T 1nv8_A          225 EDGLDFYREFFGRYDTSGKIVLME-IGEDQVEELKKIVSD  263 (284)
T ss_dssp             TTSCHHHHHHHHHCCCTTCEEEEE-CCTTCHHHHTTTSTT
T ss_pred             CcHHHHHHHHHHhcCCCCCEEEEE-ECchHHHHHHHHHHh
Confidence               15788899 999999999985 334455555555544

>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46

Probab=99.70  E-value=4.7e-17  Score=128.32  Aligned_cols=154  Identities=18%  Similarity=0.132  Sum_probs=104.3

Q ss_pred             chhHHHHHHHHHhhc---cCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccC
Q 026513           54 HATTKLCLLLLRRLI---KGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPD  130 (237)
Q Consensus        54 ~~~~~~~~~~l~~~~---~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~  130 (237)
                      ++++..+.+.+...+   .++.+|||+|||+|.++..+++.+..+|+|+|+|+.+++.|++++..+++..   ++.++++
T Consensus        25 rp~~~~~~~~~~~~l~~~~~~~~vLD~GcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~---~~~~~~~  101 (187)
T 2fhp_A           25 RPTTDKVKESIFNMIGPYFDGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIAITKEPE---KFEVRKM  101 (187)
T ss_dssp             CCCCHHHHHHHHHHHCSCCSSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHTCGG---GEEEEES
T ss_pred             CcCHHHHHHHHHHHHHhhcCCCCEEEeCCccCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCCc---ceEEEEC
Confidence            444444444443332   3678999999999999999888877899999999999999999999888643   3888899


Q ss_pred             ccccccccccccccccccccccccCCCCCCceeEEEEeCChH--HHHHHHHHH--hHhcCCCeEEEEeccCCCCHHHHHH
Q 026513          131 RTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLN--PLLQLADHI--VSYAKPGAVVGISGILSEQLPHIIN  206 (237)
Q Consensus       131 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~~--~~~~~l~~~--~~~L~~gG~liis~~~~~~~~~~~~  206 (237)
                      |+.+....                .....++||+|+++++++  .....+..+  .++|+|||.+++.........+.  
T Consensus       102 d~~~~~~~----------------~~~~~~~fD~i~~~~~~~~~~~~~~~~~l~~~~~L~~gG~l~~~~~~~~~~~~~--  163 (187)
T 2fhp_A          102 DANRALEQ----------------FYEEKLQFDLVLLDPPYAKQEIVSQLEKMLERQLLTNEAVIVCETDKTVKLPET--  163 (187)
T ss_dssp             CHHHHHHH----------------HHHTTCCEEEEEECCCGGGCCHHHHHHHHHHTTCEEEEEEEEEEEETTCCCCSE--
T ss_pred             cHHHHHHH----------------HHhcCCCCCEEEECCCCCchhHHHHHHHHHHhcccCCCCEEEEEeCCccccccc--
Confidence            97631100                001146899999999854  234556666  78899999999975443322211  


Q ss_pred             HHhhccccceeeecCCEEEEEEEE
Q 026513          207 RYSEFLEDILVSEMDDWTCVSGKK  230 (237)
Q Consensus       207 ~~~~~~~~~~~~~~~~w~~~~~~~  230 (237)
                        ...+........+.....++++
T Consensus       164 --~~~~~~~~~~~~g~~~~~~~~~  185 (187)
T 2fhp_A          164 --IGTLKKTRETVYGITQVTIYRQ  185 (187)
T ss_dssp             --ETTEEEEEEEEETTEEEEEEEC
T ss_pred             --ccchhhhhhhccCceEEEEEEe
Confidence              1224444444555555555543

>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}

Probab=99.70  E-value=3.2e-17  Score=131.72  Aligned_cols=157  Identities=13%  Similarity=0.094  Sum_probs=92.1

Q ss_pred             chhHHHHHHHHHhhc---cCCCeEEEEcCcchHHHHHHHHhC-CCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEecc
Q 026513           54 HATTKLCLLLLRRLI---KGGELFLDYGTGSGILGIAAIKFG-AAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVP  129 (237)
Q Consensus        54 ~~~~~~~~~~l~~~~---~~~~~vLDlG~G~G~~~~~la~~~-~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~  129 (237)
                      .+.+..+...+...+   .++.+|||+|||+|.++..+++.. ..+++|+|+|+.+++.|++++..++. +    +.+++
T Consensus        11 ~~~~~~~~~~~~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-~----~~~~~   85 (215)
T 4dzr_A           11 RPDTEVLVEEAIRFLKRMPSGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNAERFGA-V----VDWAA   85 (215)
T ss_dssp             CHHHHHHHHHHHHHHTTCCTTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC------------------------CCH
T ss_pred             CccHHHHHHHHHHHhhhcCCCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhCC-c----eEEEE
Confidence            455666666665543   678899999999999999999764 55899999999999999999987765 2    77888


Q ss_pred             CccccccccccccccccccccccccCCCCCCceeEEEEeCChHH-----------------------------HHHHHHH
Q 026513          130 DRTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLNP-----------------------------LLQLADH  180 (237)
Q Consensus       130 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~~~-----------------------------~~~~l~~  180 (237)
                      +|+.+.. .+               .....++||+|++|+|+..                             +..++..
T Consensus        86 ~d~~~~~-~~---------------~~~~~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  149 (215)
T 4dzr_A           86 ADGIEWL-IE---------------RAERGRPWHAIVSNPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAAL  149 (215)
T ss_dssp             HHHHHHH-HH---------------HHHTTCCBSEEEECCCCCC------------------------CTTHHHHHHHTC
T ss_pred             cchHhhh-hh---------------hhhccCcccEEEECCCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHH
Confidence            8876411 00               0001378999999988521                             1567788


Q ss_pred             HhHhcCCCeEEEEeccCCCCHHHHHHHHh--hc-cccceee-e-cCCEEEEEEEEc
Q 026513          181 IVSYAKPGAVVGISGILSEQLPHIINRYS--EF-LEDILVS-E-MDDWTCVSGKKK  231 (237)
Q Consensus       181 ~~~~L~~gG~liis~~~~~~~~~~~~~~~--~~-~~~~~~~-~-~~~w~~~~~~~~  231 (237)
                      +.++|+|||++++..+.......+...+.  .. |..+++. . .+.-..++.+++
T Consensus       150 ~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~~~gf~~~~~~~~~~~~~r~~~~~~~  205 (215)
T 4dzr_A          150 PPYVLARGRAGVFLEVGHNQADEVARLFAPWRERGFRVRKVKDLRGIDRVIAVTRE  205 (215)
T ss_dssp             CGGGBCSSSEEEEEECTTSCHHHHHHHTGGGGGGTEECCEEECTTSCEEEEEEEEC
T ss_pred             HHHHhcCCCeEEEEEECCccHHHHHHHHHHhhcCCceEEEEEecCCCEEEEEEEEc
Confidence            88999999995554445566677777766  33 5444443 2 333344444443

>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*

Probab=99.69  E-value=3e-16  Score=138.21  Aligned_cols=137  Identities=17%  Similarity=0.213  Sum_probs=108.7

Q ss_pred             ceeEEeCcccccCCCCchhHHHHHHHHHhhccCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcC
Q 026513           38 ATNIILNPGLAFGSGEHATTKLCLLLLRRLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNN  117 (237)
Q Consensus        38 ~~~~~~~~~~~f~~g~~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~  117 (237)
                      ...+.+++...+.+|.....+.....+...  ++.+|||+|||+|.+++.++.. ..+|+++|+|+.+++.|++|+..++
T Consensus       179 g~~f~i~~~~~~~~g~f~~~~~~~~~~~~~--~~~~VLDlg~G~G~~~~~la~~-~~~v~~vD~s~~~~~~a~~n~~~n~  255 (382)
T 1wxx_A          179 RVRYLVDLRAGQKTGAYLDQRENRLYMERF--RGERALDVFSYAGGFALHLALG-FREVVAVDSSAEALRRAEENARLNG  255 (382)
T ss_dssp             TEEEEEECSTTSCCCCCGGGHHHHHHGGGC--CEEEEEEETCTTTHHHHHHHHH-EEEEEEEESCHHHHHHHHHHHHHTT
T ss_pred             CEEEEEEchhcccCccccchHHHHHHHHhc--CCCeEEEeeeccCHHHHHHHHh-CCEEEEEECCHHHHHHHHHHHHHcC
Confidence            456777777667777777666665555544  7889999999999999999987 7789999999999999999999999


Q ss_pred             CCCCcceEEeccCccccccccccccccccccccccccCCCCCCceeEEEEeCCh------------HHHHHHHHHHhHhc
Q 026513          118 IGPKKMKLHLVPDRTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILL------------NPLLQLADHIVSYA  185 (237)
Q Consensus       118 ~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~------------~~~~~~l~~~~~~L  185 (237)
                      +.+    +.++++|+.+...         .       ......+||+|++|||.            ..+..++..+.++|
T Consensus       256 ~~~----~~~~~~d~~~~~~---------~-------~~~~~~~fD~Ii~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~L  315 (382)
T 1wxx_A          256 LGN----VRVLEANAFDLLR---------R-------LEKEGERFDLVVLDPPAFAKGKKDVERAYRAYKEVNLRAIKLL  315 (382)
T ss_dssp             CTT----EEEEESCHHHHHH---------H-------HHHTTCCEEEEEECCCCSCCSTTSHHHHHHHHHHHHHHHHHTE
T ss_pred             CCC----ceEEECCHHHHHH---------H-------HHhcCCCeeEEEECCCCCCCChhHHHHHHHHHHHHHHHHHHhc
Confidence            876    7888999863210         0       00014689999999986            44567899999999


Q ss_pred             CCCeEEEEeccC
Q 026513          186 KPGAVVGISGIL  197 (237)
Q Consensus       186 ~~gG~liis~~~  197 (237)
                      +|||.+++++..
T Consensus       316 kpgG~l~~~~~~  327 (382)
T 1wxx_A          316 KEGGILATASCS  327 (382)
T ss_dssp             EEEEEEEEEECC
T ss_pred             CCCCEEEEEECC
Confidence            999999998654

>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}

Probab=99.69  E-value=4.1e-16  Score=126.14  Aligned_cols=141  Identities=16%  Similarity=0.097  Sum_probs=110.4

Q ss_pred             ccCCCeEEEEcCcchHHHHHHHHhC--CCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccc
Q 026513           68 IKGGELFLDYGTGSGILGIAAIKFG--AAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVV  145 (237)
Q Consensus        68 ~~~~~~vLDlG~G~G~~~~~la~~~--~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  145 (237)
                      +.++.+|||+|||+|.++..+++.+  ..+|+|+|+|+.+++.|++++...++.+    +.++.+|+.+.          
T Consensus        35 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~----~~~~~~d~~~~----------  100 (219)
T 3dh0_A           35 LKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKN----VEVLKSEENKI----------  100 (219)
T ss_dssp             CCTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTCTT----EEEEECBTTBC----------
T ss_pred             CCCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCc----EEEEecccccC----------
Confidence            4678899999999999999998763  5689999999999999999999888764    88888887631          


Q ss_pred             cccccccccCCCCCCceeEEEEeCChHHH---HHHHHHHhHhcCCCeEEEEeccCC------------CCHHHHHHHHhh
Q 026513          146 EDLSSHKIRGISQTEKYDVVIANILLNPL---LQLADHIVSYAKPGAVVGISGILS------------EQLPHIINRYSE  210 (237)
Q Consensus       146 ~~~~~~~~~~~~~~~~fD~I~~n~~~~~~---~~~l~~~~~~L~~gG~liis~~~~------------~~~~~~~~~~~~  210 (237)
                                ..++++||+|+++.+++++   ..+++.+.++|+|||.+++..+..            ....++...+..
T Consensus       101 ----------~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  170 (219)
T 3dh0_A          101 ----------PLPDNTVDFIFMAFTFHELSEPLKFLEELKRVAKPFAYLAIIDWKKEERDKGPPPEEVYSEWEVGLILED  170 (219)
T ss_dssp             ----------SSCSSCEEEEEEESCGGGCSSHHHHHHHHHHHEEEEEEEEEEEECSSCCSSSCCGGGSCCHHHHHHHHHH
T ss_pred             ----------CCCCCCeeEEEeehhhhhcCCHHHHHHHHHHHhCCCeEEEEEEecccccccCCchhcccCHHHHHHHHHH
Confidence                      1235789999999988765   578999999999999999975432            235677777765


Q ss_pred             c-cccceeee-cCCEEEEEEEEcc
Q 026513          211 F-LEDILVSE-MDDWTCVSGKKKR  232 (237)
Q Consensus       211 ~-~~~~~~~~-~~~w~~~~~~~~~  232 (237)
                      . |+.++... .+.+..++++|..
T Consensus       171 ~Gf~~~~~~~~~~~~~~~~~~k~~  194 (219)
T 3dh0_A          171 AGIRVGRVVEVGKYCFGVYAMIVK  194 (219)
T ss_dssp             TTCEEEEEEEETTTEEEEEEECC-
T ss_pred             CCCEEEEEEeeCCceEEEEEEecc
Confidence            4 87777654 4456777777653

>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*

Probab=99.69  E-value=6.2e-16  Score=131.57  Aligned_cols=106  Identities=10%  Similarity=0.043  Sum_probs=91.9

Q ss_pred             ccCCCeEEEEcCcchHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccc
Q 026513           68 IKGGELFLDYGTGSGILGIAAIKF-GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVE  146 (237)
Q Consensus        68 ~~~~~~vLDlG~G~G~~~~~la~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  146 (237)
                      +.++.+|||+|||+|.++..+++. | .+|+|+|+|+.+++.|++++...++..   ++.++.+|+.+            
T Consensus        70 ~~~~~~vLDiGcG~G~~~~~la~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~---~v~~~~~d~~~------------  133 (302)
T 3hem_A           70 LEPGMTLLDIGCGWGSTMRHAVAEYD-VNVIGLTLSENQYAHDKAMFDEVDSPR---RKEVRIQGWEE------------  133 (302)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEECCHHHHHHHHHHHHHSCCSS---CEEEEECCGGG------------
T ss_pred             CCCcCEEEEeeccCcHHHHHHHHhCC-CEEEEEECCHHHHHHHHHHHHhcCCCC---ceEEEECCHHH------------
Confidence            467889999999999999999976 6 789999999999999999999988764   48888998762            


Q ss_pred             ccccccccCCCCCCceeEEEEeCChHHH------------HHHHHHHhHhcCCCeEEEEeccCCCC
Q 026513          147 DLSSHKIRGISQTEKYDVVIANILLNPL------------LQLADHIVSYAKPGAVVGISGILSEQ  200 (237)
Q Consensus       147 ~~~~~~~~~~~~~~~fD~I~~n~~~~~~------------~~~l~~~~~~L~~gG~liis~~~~~~  200 (237)
                               +  +++||+|+++.+++++            ..+++++.++|+|||.+++..+....
T Consensus       134 ---------~--~~~fD~v~~~~~~~~~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~  188 (302)
T 3hem_A          134 ---------F--DEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITIPD  188 (302)
T ss_dssp             ---------C--CCCCSEEEEESCGGGTTCCSSCCCTTHHHHHHHHHHHSSCTTCEEEEEEEECCC
T ss_pred             ---------c--CCCccEEEEcchHHhcCccccccchhHHHHHHHHHHHhcCCCcEEEEEEEeccC
Confidence                     2  5799999999988777            68899999999999999998765443

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*

Probab=99.68  E-value=4.7e-16  Score=128.78  Aligned_cols=106  Identities=17%  Similarity=0.210  Sum_probs=90.1

Q ss_pred             ccCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccc
Q 026513           68 IKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVED  147 (237)
Q Consensus        68 ~~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  147 (237)
                      +.++.+|||+|||+|.++..+++.+..+|+|+|+|+.+++.|++++...++.+   ++.++++|+.+.            
T Consensus        44 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~---~~~~~~~d~~~~------------  108 (257)
T 3f4k_A           44 LTDDAKIADIGCGTGGQTLFLADYVKGQITGIDLFPDFIEIFNENAVKANCAD---RVKGITGSMDNL------------  108 (257)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHCCSEEEEEESCHHHHHHHHHHHHHTTCTT---TEEEEECCTTSC------------
T ss_pred             CCCCCeEEEeCCCCCHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHcCCCC---ceEEEECChhhC------------
Confidence            45788999999999999999998755589999999999999999999988875   488889987531            


Q ss_pred             cccccccCCCCCCceeEEEEeCChHH--HHHHHHHHhHhcCCCeEEEEecc
Q 026513          148 LSSHKIRGISQTEKYDVVIANILLNP--LLQLADHIVSYAKPGAVVGISGI  196 (237)
Q Consensus       148 ~~~~~~~~~~~~~~fD~I~~n~~~~~--~~~~l~~~~~~L~~gG~liis~~  196 (237)
                              ..++++||+|+++.++++  ...+++.+.++|+|||++++++.
T Consensus       109 --------~~~~~~fD~v~~~~~l~~~~~~~~l~~~~~~L~pgG~l~~~~~  151 (257)
T 3f4k_A          109 --------PFQNEELDLIWSEGAIYNIGFERGMNEWSKYLKKGGFIAVSEA  151 (257)
T ss_dssp             --------SSCTTCEEEEEEESCSCCCCHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred             --------CCCCCCEEEEEecChHhhcCHHHHHHHHHHHcCCCcEEEEEEe
Confidence                    123579999999988765  46789999999999999999853

>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}

Probab=99.68  E-value=6.4e-16  Score=134.17  Aligned_cols=166  Identities=17%  Similarity=0.245  Sum_probs=117.0

Q ss_pred             ceeEEeCcccccCCCCchhHHHHHHHHHhhccCCCeEEEEcCcchHHHHHHHHhC-CCeEEEEeCCHHHHHHHHHHHHHc
Q 026513           38 ATNIILNPGLAFGSGEHATTKLCLLLLRRLIKGGELFLDYGTGSGILGIAAIKFG-AAMSVGADIDPQAIKSAHQNAALN  116 (237)
Q Consensus        38 ~~~~~~~~~~~f~~g~~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~la~~~-~~~v~~vD~s~~~i~~a~~~~~~~  116 (237)
                      ...+...|+++........++.++..+..  .++.+|||+|||+|.++..+++.+ ..+|+++|+|+.+++.|++++..+
T Consensus       166 ~~~~~~~~gvf~~~~~d~~~~~ll~~l~~--~~~~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l~~a~~~~~~~  243 (343)
T 2pjd_A          166 GLTVKTLPGVFSRDGLDVGSQLLLSTLTP--HTKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAAN  243 (343)
T ss_dssp             TEEEEECTTCTTSSSCCHHHHHHHHHSCT--TCCSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHHHHHHHHHT
T ss_pred             ceEEEecCCccCCCCCcHHHHHHHHhcCc--CCCCeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHh
Confidence            34556677776655555666666665522  346799999999999999998774 458999999999999999999988


Q ss_pred             CCCCCcceEEeccCccccccccccccccccccccccccCCCCCCceeEEEEeCChHH--------HHHHHHHHhHhcCCC
Q 026513          117 NIGPKKMKLHLVPDRTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLNP--------LLQLADHIVSYAKPG  188 (237)
Q Consensus       117 ~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~~~--------~~~~l~~~~~~L~~g  188 (237)
                      ++.     ..++.+|..+                     . ..++||+|++|++++.        ...++..+.++|+||
T Consensus       244 ~~~-----~~~~~~d~~~---------------------~-~~~~fD~Iv~~~~~~~g~~~~~~~~~~~l~~~~~~Lkpg  296 (343)
T 2pjd_A          244 GVE-----GEVFASNVFS---------------------E-VKGRFDMIISNPPFHDGMQTSLDAAQTLIRGAVRHLNSG  296 (343)
T ss_dssp             TCC-----CEEEECSTTT---------------------T-CCSCEEEEEECCCCCSSSHHHHHHHHHHHHHHGGGEEEE
T ss_pred             CCC-----CEEEEccccc---------------------c-ccCCeeEEEECCCcccCccCCHHHHHHHHHHHHHhCCCC
Confidence            765     4456777652                     1 1568999999998752        357899999999999


Q ss_pred             eEEEEeccCCCCHHHHHHHHhhccccceeeecCCEEEEEEEEcccc
Q 026513          189 AVVGISGILSEQLPHIINRYSEFLEDILVSEMDDWTCVSGKKKRVK  234 (237)
Q Consensus       189 G~liis~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~  234 (237)
                      |.+++...........+..+-..  ........++..+...|++..
T Consensus       297 G~l~i~~~~~~~~~~~l~~~f~~--~~~~~~~~gf~v~~~~k~r~~  340 (343)
T 2pjd_A          297 GELRIVANAFLPYPDVLDETFGF--HEVIAQTGRFKVYRAIMTRQA  340 (343)
T ss_dssp             EEEEEEEETTSSHHHHHHHHHSC--CEEEEECSSEEEEEEEC----
T ss_pred             cEEEEEEcCCCCcHHHHHHhcCc--eEEEeeCCCEEEEEEEeCCCc
Confidence            99999755433333333332221  223356778888888776654

>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53

Probab=99.68  E-value=6.2e-16  Score=125.21  Aligned_cols=120  Identities=11%  Similarity=0.072  Sum_probs=93.4

Q ss_pred             cCCCeEEEEcCcchHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccc
Q 026513           69 KGGELFLDYGTGSGILGIAAIKF-GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVED  147 (237)
Q Consensus        69 ~~~~~vLDlG~G~G~~~~~la~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  147 (237)
                      .++.+|||+|||+|.++..+++. +..+++|+|+|+.+++.|++++..+++.+    +.++++|+.+.            
T Consensus        40 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~~~~~~~~~~----v~~~~~d~~~~------------  103 (214)
T 1yzh_A           40 NDNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPN----IKLLWVDGSDL------------  103 (214)
T ss_dssp             SCCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSS----EEEEECCSSCG------------
T ss_pred             CCCCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHHHHHHHHcCCCC----EEEEeCCHHHH------------
Confidence            45789999999999999999875 56789999999999999999999888864    88999998631            


Q ss_pred             cccccccCCCCCCceeEEEEeCChH-----------HHHHHHHHHhHhcCCCeEEEEeccCCCCHHHHHHHHhh
Q 026513          148 LSSHKIRGISQTEKYDVVIANILLN-----------PLLQLADHIVSYAKPGAVVGISGILSEQLPHIINRYSE  210 (237)
Q Consensus       148 ~~~~~~~~~~~~~~fD~I~~n~~~~-----------~~~~~l~~~~~~L~~gG~liis~~~~~~~~~~~~~~~~  210 (237)
                            ....+.++||+|+++++..           ....++..+.++|+|||.+++.+........+...+.+
T Consensus       104 ------~~~~~~~~~D~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~  171 (214)
T 1yzh_A          104 ------TDYFEDGEIDRLYLNFSDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTDNRGLFEYSLVSFSQ  171 (214)
T ss_dssp             ------GGTSCTTCCSEEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHH
T ss_pred             ------HhhcCCCCCCEEEEECCCCccccchhhhccCCHHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHH
Confidence                  1112356899999998742           12478999999999999999975433334455555543

>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}

Probab=99.68  E-value=6e-16  Score=124.65  Aligned_cols=140  Identities=20%  Similarity=0.208  Sum_probs=102.2

Q ss_pred             hhccCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccc
Q 026513           66 RLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVV  145 (237)
Q Consensus        66 ~~~~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  145 (237)
                      ..++++.+|||+|||+|.++..+++.+ .+|+|+|+|+.+++.|++++   +       +.+..+|+.+           
T Consensus        39 ~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~v~~vD~s~~~~~~a~~~~---~-------~~~~~~d~~~-----------   96 (211)
T 3e23_A           39 GELPAGAKILELGCGAGYQAEAMLAAG-FDVDATDGSPELAAEASRRL---G-------RPVRTMLFHQ-----------   96 (211)
T ss_dssp             TTSCTTCEEEESSCTTSHHHHHHHHTT-CEEEEEESCHHHHHHHHHHH---T-------SCCEECCGGG-----------
T ss_pred             HhcCCCCcEEEECCCCCHHHHHHHHcC-CeEEEECCCHHHHHHHHHhc---C-------CceEEeeecc-----------
Confidence            335678899999999999999999884 47999999999999999887   2       3455666652           


Q ss_pred             cccccccccCCCCCCceeEEEEeCChHHH-----HHHHHHHhHhcCCCeEEEEeccCC--------------CCHHHHHH
Q 026513          146 EDLSSHKIRGISQTEKYDVVIANILLNPL-----LQLADHIVSYAKPGAVVGISGILS--------------EQLPHIIN  206 (237)
Q Consensus       146 ~~~~~~~~~~~~~~~~fD~I~~n~~~~~~-----~~~l~~~~~~L~~gG~liis~~~~--------------~~~~~~~~  206 (237)
                                +...++||+|+++.+++++     ..+++.+.++|+|||+++++....              ....++..
T Consensus        97 ----------~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (211)
T 3e23_A           97 ----------LDAIDAYDAVWAHACLLHVPRDELADVLKLIWRALKPGGLFYASYKSGEGEGRDKLARYYNYPSEEWLRA  166 (211)
T ss_dssp             ----------CCCCSCEEEEEECSCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECCSSCEECTTSCEECCCCHHHHHH
T ss_pred             ----------CCCCCcEEEEEecCchhhcCHHHHHHHHHHHHHhcCCCcEEEEEEcCCCcccccccchhccCCCHHHHHH
Confidence                      1246799999999887654     478999999999999999974322              24567777


Q ss_pred             HHhh-c-cccceeeec---------CCEEEEEEEEcccccCC
Q 026513          207 RYSE-F-LEDILVSEM---------DDWTCVSGKKKRVKEDH  237 (237)
Q Consensus       207 ~~~~-~-~~~~~~~~~---------~~w~~~~~~~~~~~~~~  237 (237)
                      .+.. + |+.++....         ..|..+..++....++|
T Consensus       167 ~l~~aG~f~~~~~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~  208 (211)
T 3e23_A          167 RYAEAGTWASVAVESSEGKGFDQELAQFLHVSVRKPELEHHH  208 (211)
T ss_dssp             HHHHHCCCSEEEEEEEEEECTTSCEEEEEEEEEECCCC----
T ss_pred             HHHhCCCcEEEEEEeccCCCCCCCCceEEEEEEecCcccccc
Confidence            6664 5 766655331         23888877776665544

>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*

Probab=99.68  E-value=1.6e-16  Score=129.57  Aligned_cols=122  Identities=13%  Similarity=0.158  Sum_probs=95.3

Q ss_pred             cCCCeEEEEcCcchHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccc
Q 026513           69 KGGELFLDYGTGSGILGIAAIKF-GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVED  147 (237)
Q Consensus        69 ~~~~~vLDlG~G~G~~~~~la~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  147 (237)
                      .++.+|||+|||+|.++..+++. +...|+|+|+|+.+++.|++++..+++++    +.++++|+.+.            
T Consensus        33 ~~~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l~~a~~~~~~~~l~n----v~~~~~Da~~~------------   96 (218)
T 3dxy_A           33 REAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHEEGLSN----LRVMCHDAVEV------------   96 (218)
T ss_dssp             SCCCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHTTCSS----EEEECSCHHHH------------
T ss_pred             CCCCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHHHHHHHHHHHhCCCc----EEEEECCHHHH------------
Confidence            45779999999999999999865 56789999999999999999999998886    88999997631            


Q ss_pred             cccccccCCCCCCceeEEEEeCC--hH---HH------HHHHHHHhHhcCCCeEEEEeccCCCCHHHHHHHHhhc
Q 026513          148 LSSHKIRGISQTEKYDVVIANIL--LN---PL------LQLADHIVSYAKPGAVVGISGILSEQLPHIINRYSEF  211 (237)
Q Consensus       148 ~~~~~~~~~~~~~~fD~I~~n~~--~~---~~------~~~l~~~~~~L~~gG~liis~~~~~~~~~~~~~~~~~  211 (237)
                           +....++++||.|+++.+  ..   +.      ..+++.+.++|+|||.+++++...+...++...+...
T Consensus        97 -----l~~~~~~~~~d~v~~~~~~p~~~~~~~~rr~~~~~~l~~~~r~LkpGG~l~i~td~~~~~~~~~~~~~~~  166 (218)
T 3dxy_A           97 -----LHKMIPDNSLRMVQLFFPDPWHKARHNKRRIVQVPFAELVKSKLQLGGVFHMATDWEPYAEHMLEVMSSI  166 (218)
T ss_dssp             -----HHHHSCTTCEEEEEEESCCCCCSGGGGGGSSCSHHHHHHHHHHEEEEEEEEEEESCHHHHHHHHHHHHTS
T ss_pred             -----HHHHcCCCChheEEEeCCCCccchhhhhhhhhhHHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHhC
Confidence                 111134679999999843  21   11      2589999999999999999876655556666666543

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*

Probab=99.68  E-value=2.3e-16  Score=131.75  Aligned_cols=106  Identities=15%  Similarity=0.152  Sum_probs=90.9

Q ss_pred             ccCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccc
Q 026513           68 IKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVED  147 (237)
Q Consensus        68 ~~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  147 (237)
                      +.++.+|||+|||+|.++..+++.+..+|+|+|+|+.+++.|++++...++.+   ++.++.+|+.+.            
T Consensus        44 ~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~---~v~~~~~d~~~~------------  108 (267)
T 3kkz_A           44 LTEKSLIADIGCGTGGQTMVLAGHVTGQVTGLDFLSGFIDIFNRNARQSGLQN---RVTGIVGSMDDL------------  108 (267)
T ss_dssp             CCTTCEEEEETCTTCHHHHHHHTTCSSEEEEEESCHHHHHHHHHHHHHTTCTT---TEEEEECCTTSC------------
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHhccCCEEEEEeCCHHHHHHHHHHHHHcCCCc---CcEEEEcChhhC------------
Confidence            46788999999999999999998877799999999999999999999888865   488889988631            


Q ss_pred             cccccccCCCCCCceeEEEEeCChHHH--HHHHHHHhHhcCCCeEEEEecc
Q 026513          148 LSSHKIRGISQTEKYDVVIANILLNPL--LQLADHIVSYAKPGAVVGISGI  196 (237)
Q Consensus       148 ~~~~~~~~~~~~~~fD~I~~n~~~~~~--~~~l~~~~~~L~~gG~liis~~  196 (237)
                              ..++++||+|+++.++++.  ..+++.+.++|+|||++++++.
T Consensus       109 --------~~~~~~fD~i~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  151 (267)
T 3kkz_A          109 --------PFRNEELDLIWSEGAIYNIGFERGLNEWRKYLKKGGYLAVSEC  151 (267)
T ss_dssp             --------CCCTTCEEEEEESSCGGGTCHHHHHHHHGGGEEEEEEEEEEEE
T ss_pred             --------CCCCCCEEEEEEcCCceecCHHHHHHHHHHHcCCCCEEEEEEe
Confidence                    1235799999999987665  5679999999999999999754

>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*

Probab=99.67  E-value=5.9e-16  Score=138.48  Aligned_cols=156  Identities=15%  Similarity=0.109  Sum_probs=116.8

Q ss_pred             ceeEEeCcccccCCCCchhHHHHHHHHHhh-ccCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHc
Q 026513           38 ATNIILNPGLAFGSGEHATTKLCLLLLRRL-IKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALN  116 (237)
Q Consensus        38 ~~~~~~~~~~~f~~g~~~~~~~~~~~l~~~-~~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~  116 (237)
                      ...+.+.|+.+|+.+...+..+....+... ..++.+|||+|||+|.+++.++.. ..+|+|+|+|+.+++.|++|+..+
T Consensus       253 g~~~~~~~~~f~q~n~~~~e~l~~~~~~~l~~~~~~~VLDlgcG~G~~~~~la~~-~~~V~gvD~s~~al~~A~~n~~~~  331 (433)
T 1uwv_A          253 GLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQ-AASVVGVEGVPALVEKGQQNARLN  331 (433)
T ss_dssp             TEEEECCSSSCCCSBHHHHHHHHHHHHHHHTCCTTCEEEEESCTTTTTHHHHHTT-SSEEEEEESCHHHHHHHHHHHHHT
T ss_pred             CEEEEECcccccccCHHHHHHHHHHHHHhhcCCCCCEEEECCCCCCHHHHHHHhh-CCEEEEEeCCHHHHHHHHHHHHHc
Confidence            577888998887765444444444444332 356789999999999999999987 678999999999999999999999


Q ss_pred             CCCCCcceEEeccCccccccccccccccccccccccccC-CCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEec
Q 026513          117 NIGPKKMKLHLVPDRTFTASMNERVDGVVEDLSSHKIRG-ISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISG  195 (237)
Q Consensus       117 ~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~  195 (237)
                      ++.+    +.++++|+.+..                 .. ...+.+||+|++|||+....+++..+.. ++|++.+|+||
T Consensus       332 ~~~~----v~f~~~d~~~~l-----------------~~~~~~~~~fD~Vv~dPPr~g~~~~~~~l~~-~~p~~ivyvsc  389 (433)
T 1uwv_A          332 GLQN----VTFYHENLEEDV-----------------TKQPWAKNGFDKVLLDPARAGAAGVMQQIIK-LEPIRIVYVSC  389 (433)
T ss_dssp             TCCS----EEEEECCTTSCC-----------------SSSGGGTTCCSEEEECCCTTCCHHHHHHHHH-HCCSEEEEEES
T ss_pred             CCCc----eEEEECCHHHHh-----------------hhhhhhcCCCCEEEECCCCccHHHHHHHHHh-cCCCeEEEEEC
Confidence            8875    889999986411                 01 1124589999999998766666666554 79999999999


Q ss_pred             cCCCCHHHHHHHHhhccccce
Q 026513          196 ILSEQLPHIINRYSEFLEDIL  216 (237)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~  216 (237)
                      ......+++.......|....
T Consensus       390 ~p~tlard~~~l~~~Gy~~~~  410 (433)
T 1uwv_A          390 NPATLARDSEALLKAGYTIAR  410 (433)
T ss_dssp             CHHHHHHHHHHHHHTTCEEEE
T ss_pred             ChHHHHhhHHHHHHCCcEEEE
Confidence            877766776665555454433

>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*

Probab=99.67  E-value=8.7e-16  Score=124.83  Aligned_cols=121  Identities=17%  Similarity=0.212  Sum_probs=94.6

Q ss_pred             hHHHHHHHHHhhccCCCeEEEEcCcchHHHHHHHHh-C-CCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccc
Q 026513           56 TTKLCLLLLRRLIKGGELFLDYGTGSGILGIAAIKF-G-AAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTF  133 (237)
Q Consensus        56 ~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~la~~-~-~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~  133 (237)
                      ....++..+.. ..++.+|||+|||+|..+..+++. + ..+|+++|+++.+++.|++++...++.+   ++.++.+|..
T Consensus        45 ~~~~~l~~l~~-~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~---~v~~~~~d~~  120 (223)
T 3duw_A           45 TQGKFLQLLVQ-IQGARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLND---RVEVRTGLAL  120 (223)
T ss_dssp             HHHHHHHHHHH-HHTCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTCTT---TEEEEESCHH
T ss_pred             HHHHHHHHHHH-hhCCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCC---cEEEEEcCHH
Confidence            33334444332 256789999999999999999975 3 5689999999999999999999888865   4888899876


Q ss_pred             cccccccccccccccccccccCCC--CCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEeccC
Q 026513          134 TASMNERVDGVVEDLSSHKIRGIS--QTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGIL  197 (237)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~~~  197 (237)
                      +..                 ..+.  ..++||+|+++.+...+..+++.+.++|+|||++++.+..
T Consensus       121 ~~~-----------------~~~~~~~~~~fD~v~~d~~~~~~~~~l~~~~~~L~pgG~lv~~~~~  169 (223)
T 3duw_A          121 DSL-----------------QQIENEKYEPFDFIFIDADKQNNPAYFEWALKLSRPGTVIIGDNVV  169 (223)
T ss_dssp             HHH-----------------HHHHHTTCCCCSEEEECSCGGGHHHHHHHHHHTCCTTCEEEEESCS
T ss_pred             HHH-----------------HHHHhcCCCCcCEEEEcCCcHHHHHHHHHHHHhcCCCcEEEEeCCC
Confidence            311                 0010  1257999999999888889999999999999999997554

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}

Probab=99.67  E-value=4.9e-16  Score=121.50  Aligned_cols=120  Identities=17%  Similarity=0.111  Sum_probs=95.0

Q ss_pred             ccCCCeEEEEcCcchHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccc
Q 026513           68 IKGGELFLDYGTGSGILGIAAIKF-GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVE  146 (237)
Q Consensus        68 ~~~~~~vLDlG~G~G~~~~~la~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  146 (237)
                      ..++.+|||+|||+|.++..+++. +..+|+++|+|+.+++.|++++...++..   ++ ++.+|..+..          
T Consensus        23 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~---~~-~~~~d~~~~~----------   88 (178)
T 3hm2_A           23 PKPHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGVSD---RI-AVQQGAPRAF----------   88 (178)
T ss_dssp             CCTTEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTTTCTT---SE-EEECCTTGGG----------
T ss_pred             ccCCCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHhCCCC---CE-EEecchHhhh----------
Confidence            457889999999999999999875 57789999999999999999999888763   26 6677764210          


Q ss_pred             ccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEeccCCCCHHHHHHHHhhc
Q 026513          147 DLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILSEQLPHIINRYSEF  211 (237)
Q Consensus       147 ~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~~~~~~~~~~~~~~~~~  211 (237)
                               ....++||+|+++.++++ ..+++.+.++|+|||++++..+..+....+...+...
T Consensus        89 ---------~~~~~~~D~i~~~~~~~~-~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~  143 (178)
T 3hm2_A           89 ---------DDVPDNPDVIFIGGGLTA-PGVFAAAWKRLPVGGRLVANAVTVESEQMLWALRKQF  143 (178)
T ss_dssp             ---------GGCCSCCSEEEECC-TTC-TTHHHHHHHTCCTTCEEEEEECSHHHHHHHHHHHHHH
T ss_pred             ---------hccCCCCCEEEECCcccH-HHHHHHHHHhcCCCCEEEEEeeccccHHHHHHHHHHc
Confidence                     001268999999998876 7789999999999999999887666666666666543

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=99.67  E-value=9e-16  Score=144.67  Aligned_cols=139  Identities=17%  Similarity=0.205  Sum_probs=114.5

Q ss_pred             CceeEEeCcccccCCCCchhHHHHHHHHHhhccCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHc
Q 026513           37 QATNIILNPGLAFGSGEHATTKLCLLLLRRLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALN  116 (237)
Q Consensus        37 ~~~~~~~~~~~~f~~g~~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~  116 (237)
                      ....+.+++...+.+|.....+.....+... .+|.+|||+|||+|.+++.++..|+.+|+++|+|+.+++.|++|+..+
T Consensus       507 ~g~~~~v~~~~~~~tG~f~d~r~~r~~l~~~-~~g~~VLDlg~GtG~~sl~aa~~ga~~V~aVD~s~~al~~a~~N~~~n  585 (703)
T 3v97_A          507 YNAHLWVNLTDYLDTGLFLDHRIARRMLGQM-SKGKDFLNLFSYTGSATVHAGLGGARSTTTVDMSRTYLEWAERNLRLN  585 (703)
T ss_dssp             TTEEEEECSSSSSSCSCCGGGHHHHHHHHHH-CTTCEEEEESCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHT
T ss_pred             CCEEEEEeccccccCCCcccHHHHHHHHHHh-cCCCcEEEeeechhHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHc
Confidence            3567778888888899998888887777664 478899999999999999999888888999999999999999999999


Q ss_pred             CCCCCcceEEeccCccccccccccccccccccccccccCCCCCCceeEEEEeCCh--------------HHHHHHHHHHh
Q 026513          117 NIGPKKMKLHLVPDRTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILL--------------NPLLQLADHIV  182 (237)
Q Consensus       117 ~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~--------------~~~~~~l~~~~  182 (237)
                      ++...  ++.++++|+++..                 ..  ..++||+|++|||.              ..+.+++..+.
T Consensus       586 gl~~~--~v~~i~~D~~~~l-----------------~~--~~~~fD~Ii~DPP~f~~~~~~~~~~~~~~~~~~ll~~a~  644 (703)
T 3v97_A          586 GLTGR--AHRLIQADCLAWL-----------------RE--ANEQFDLIFIDPPTFSNSKRMEDAFDVQRDHLALMKDLK  644 (703)
T ss_dssp             TCCST--TEEEEESCHHHHH-----------------HH--CCCCEEEEEECCCSBC-------CCBHHHHHHHHHHHHH
T ss_pred             CCCcc--ceEEEecCHHHHH-----------------Hh--cCCCccEEEECCccccCCccchhHHHHHHHHHHHHHHHH
Confidence            98621  3888999987411                 01  14689999999984              23456789999


Q ss_pred             HhcCCCeEEEEeccC
Q 026513          183 SYAKPGAVVGISGIL  197 (237)
Q Consensus       183 ~~L~~gG~liis~~~  197 (237)
                      ++|+|||+|++++..
T Consensus       645 ~~LkpgG~L~~s~~~  659 (703)
T 3v97_A          645 RLLRAGGTIMFSNNK  659 (703)
T ss_dssp             HHEEEEEEEEEEECC
T ss_pred             HhcCCCcEEEEEECC
Confidence            999999999998765

>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46

Probab=99.67  E-value=2.6e-16  Score=122.14  Aligned_cols=121  Identities=21%  Similarity=0.195  Sum_probs=89.8

Q ss_pred             HHHHHHHHhhccCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccc
Q 026513           58 KLCLLLLRRLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASM  137 (237)
Q Consensus        58 ~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~  137 (237)
                      ..+...+...++++.+|||+|||+|.++..+++.+.. ++|+|+|+.+++.|++++..+++ +    +.++++|+.+.. 
T Consensus        29 ~~~~~~~~~~~~~~~~vLD~GcG~G~~~~~l~~~~~~-v~~vD~~~~~~~~a~~~~~~~~~-~----~~~~~~d~~~~~-  101 (171)
T 1ws6_A           29 KALFDYLRLRYPRRGRFLDPFAGSGAVGLEAASEGWE-AVLVEKDPEAVRLLKENVRRTGL-G----ARVVALPVEVFL-  101 (171)
T ss_dssp             HHHHHHHHHHCTTCCEEEEETCSSCHHHHHHHHTTCE-EEEECCCHHHHHHHHHHHHHHTC-C----CEEECSCHHHHH-
T ss_pred             HHHHHHHHhhccCCCeEEEeCCCcCHHHHHHHHCCCe-EEEEeCCHHHHHHHHHHHHHcCC-c----eEEEeccHHHHH-
Confidence            3334444332337889999999999999999988655 99999999999999999998876 3    778899876311 


Q ss_pred             cccccccccccccccccCC-CCCCceeEEEEeCChH-HHHHHHHHHh--HhcCCCeEEEEeccCCCCH
Q 026513          138 NERVDGVVEDLSSHKIRGI-SQTEKYDVVIANILLN-PLLQLADHIV--SYAKPGAVVGISGILSEQL  201 (237)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~-~~~~~fD~I~~n~~~~-~~~~~l~~~~--~~L~~gG~liis~~~~~~~  201 (237)
                                      ... ...++||+|+++++++ ...++++.+.  ++|+|||.+++++......
T Consensus       102 ----------------~~~~~~~~~~D~i~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~~~~~~~  153 (171)
T 1ws6_A          102 ----------------PEAKAQGERFTVAFMAPPYAMDLAALFGELLASGLVEAGGLYVLQHPKDLYL  153 (171)
T ss_dssp             ----------------HHHHHTTCCEEEEEECCCTTSCTTHHHHHHHHHTCEEEEEEEEEEEETTSCC
T ss_pred             ----------------HhhhccCCceEEEEECCCCchhHHHHHHHHHhhcccCCCcEEEEEeCCccCC
Confidence                            000 0134899999999873 3345666666  9999999999987655443

>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*

Probab=99.67  E-value=7.6e-16  Score=121.34  Aligned_cols=120  Identities=18%  Similarity=0.230  Sum_probs=98.9

Q ss_pred             ccCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccc
Q 026513           68 IKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVED  147 (237)
Q Consensus        68 ~~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  147 (237)
                      ..++.+|||+|||+|.++..+++.+ .+++++|+|+.+++.+++++..+++..   ++.+..+|+.+.            
T Consensus        31 ~~~~~~vldiG~G~G~~~~~l~~~~-~~v~~~D~~~~~~~~a~~~~~~~~~~~---~~~~~~~d~~~~------------   94 (192)
T 1l3i_A           31 PGKNDVAVDVGCGTGGVTLELAGRV-RRVYAIDRNPEAISTTEMNLQRHGLGD---NVTLMEGDAPEA------------   94 (192)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHTTS-SEEEEEESCHHHHHHHHHHHHHTTCCT---TEEEEESCHHHH------------
T ss_pred             CCCCCEEEEECCCCCHHHHHHHHhc-CEEEEEECCHHHHHHHHHHHHHcCCCc---ceEEEecCHHHh------------
Confidence            4678899999999999999999876 889999999999999999999888732   378888887531            


Q ss_pred             cccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEeccCCCCHHHHHHHHhhc
Q 026513          148 LSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILSEQLPHIINRYSEF  211 (237)
Q Consensus       148 ~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~~~~~~~~~~~~~~~~~  211 (237)
                              +...++||+|+++.+++....++..+.++|+|||.+++.........++...+...
T Consensus        95 --------~~~~~~~D~v~~~~~~~~~~~~l~~~~~~l~~gG~l~~~~~~~~~~~~~~~~l~~~  150 (192)
T 1l3i_A           95 --------LCKIPDIDIAVVGGSGGELQEILRIIKDKLKPGGRIIVTAILLETKFEAMECLRDL  150 (192)
T ss_dssp             --------HTTSCCEEEEEESCCTTCHHHHHHHHHHTEEEEEEEEEEECBHHHHHHHHHHHHHT
T ss_pred             --------cccCCCCCEEEECCchHHHHHHHHHHHHhcCCCcEEEEEecCcchHHHHHHHHHHC
Confidence                    11125899999999888888999999999999999999876666666677666654

>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}

Probab=99.67  E-value=2.9e-16  Score=133.89  Aligned_cols=146  Identities=20%  Similarity=0.190  Sum_probs=110.5

Q ss_pred             HHHHhhccCCCeEEEEcCcchHHHHHHH--HhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccc
Q 026513           62 LLLRRLIKGGELFLDYGTGSGILGIAAI--KFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNE  139 (237)
Q Consensus        62 ~~l~~~~~~~~~vLDlG~G~G~~~~~la--~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~  139 (237)
                      ..+...+.++.+|||+|||+|.++..++  ..+..+|+|+|+|+.+++.|++++...++.+   ++.++++|+.+     
T Consensus       110 ~~l~~~l~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~---~v~~~~~d~~~-----  181 (305)
T 3ocj_A          110 RALQRHLRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAG---QITLHRQDAWK-----  181 (305)
T ss_dssp             HHHHHHCCTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTTGG---GEEEEECCGGG-----
T ss_pred             HHHHhhCCCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCCCC---ceEEEECchhc-----
Confidence            3444446788999999999999999885  4567789999999999999999998887765   48899999863     


Q ss_pred             cccccccccccccccCCCCCCceeEEEEeCChHHH------HHHHHHHhHhcCCCeEEEEeccCC---------------
Q 026513          140 RVDGVVEDLSSHKIRGISQTEKYDVVIANILLNPL------LQLADHIVSYAKPGAVVGISGILS---------------  198 (237)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~~~~------~~~l~~~~~~L~~gG~liis~~~~---------------  198 (237)
                                      +...++||+|+++.++++.      ..+++.+.++|+|||+++++++..               
T Consensus       182 ----------------~~~~~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~w~~~~~  245 (305)
T 3ocj_A          182 ----------------LDTREGYDLLTSNGLNIYEPDDARVTELYRRFWQALKPGGALVTSFLTPPPALSPDSPWDMQAI  245 (305)
T ss_dssp             ----------------CCCCSCEEEEECCSSGGGCCCHHHHHHHHHHHHHHEEEEEEEEEECCCCCTTTCTTCCCCGGGS
T ss_pred             ----------------CCccCCeEEEEECChhhhcCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCCcccccccceeecc
Confidence                            1113799999998877543      247999999999999999976321               


Q ss_pred             -----------------------CCHHHHHHHHhhc-cccceee--ecCCEEEEEEEEc
Q 026513          199 -----------------------EQLPHIINRYSEF-LEDILVS--EMDDWTCVSGKKK  231 (237)
Q Consensus       199 -----------------------~~~~~~~~~~~~~-~~~~~~~--~~~~w~~~~~~~~  231 (237)
                                             ....++...+... |+.+.+.  ..+.|..+.++|+
T Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~~~~~~~v~a~Kp  304 (305)
T 3ocj_A          246 DPHDLQLQQLVFTRLIQPRWNALRTHAQTRAQLEEAGFTDLRFEDDRARLFPTVIARKP  304 (305)
T ss_dssp             CHHHHHHHHHHHHHTTCCSCCCCCCHHHHHHHHHHTTCEEEEEECCTTSSSCEEEEECC
T ss_pred             ccchhhhhhhHHHHHHhhhhhccCCHHHHHHHHHHCCCEEEEEEcccCceeeEEEEecC
Confidence                                   2355666666654 7766655  3555777777664

>3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A*

Probab=99.67  E-value=2.7e-16  Score=132.56  Aligned_cols=109  Identities=19%  Similarity=0.283  Sum_probs=92.6

Q ss_pred             HHHhhccCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccc
Q 026513           63 LLRRLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVD  142 (237)
Q Consensus        63 ~l~~~~~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~  142 (237)
                      .+....++|.+|||+|||+|.+++.+++.|..+|+++|+||.+++.+++|++.|++.+   ++.++++|..+        
T Consensus       118 ri~~~~~~g~~VlD~~aG~G~~~i~~a~~g~~~V~avD~np~a~~~~~~N~~~N~v~~---~v~~~~~D~~~--------  186 (278)
T 3k6r_A          118 RMAKVAKPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVED---RMSAYNMDNRD--------  186 (278)
T ss_dssp             HHHHHCCTTCEEEETTCTTTTTTHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTT---TEEEECSCTTT--------
T ss_pred             HHHHhcCCCCEEEEecCcCcHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHcCCCC---cEEEEeCcHHH--------
Confidence            3445568899999999999999999999988899999999999999999999999987   58899999863        


Q ss_pred             ccccccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEecc
Q 026513          143 GVVEDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGI  196 (237)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~~  196 (237)
                                   +....+||.|++|+|... .+++..+.++|++||.+.+.++
T Consensus       187 -------------~~~~~~~D~Vi~~~p~~~-~~~l~~a~~~lk~gG~ih~~~~  226 (278)
T 3k6r_A          187 -------------FPGENIADRILMGYVVRT-HEFIPKALSIAKDGAIIHYHNT  226 (278)
T ss_dssp             -------------CCCCSCEEEEEECCCSSG-GGGHHHHHHHEEEEEEEEEEEE
T ss_pred             -------------hccccCCCEEEECCCCcH-HHHHHHHHHHcCCCCEEEEEee
Confidence                         334578999999987543 3577888899999999977554

>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}

Probab=99.66  E-value=4.6e-15  Score=123.05  Aligned_cols=109  Identities=13%  Similarity=0.228  Sum_probs=91.2

Q ss_pred             cCCCeEEEEcCcchHHHHHHHHh-C-CCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccc
Q 026513           69 KGGELFLDYGTGSGILGIAAIKF-G-AAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVE  146 (237)
Q Consensus        69 ~~~~~vLDlG~G~G~~~~~la~~-~-~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  146 (237)
                      .++.+|||+|||+|..+..+++. + ..+|+++|+++.+++.|++++...++.+   ++.++.+|+.+.           
T Consensus        62 ~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~---~v~~~~~d~~~~-----------  127 (248)
T 3tfw_A           62 TQAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVDQ---RVTLREGPALQS-----------  127 (248)
T ss_dssp             HTCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTCTT---TEEEEESCHHHH-----------
T ss_pred             cCCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCC---cEEEEEcCHHHH-----------
Confidence            56789999999999999999975 4 6789999999999999999999988874   488889997631           


Q ss_pred             ccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEeccC
Q 026513          147 DLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGIL  197 (237)
Q Consensus       147 ~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~~~  197 (237)
                            +......++||+|+++.+......+++.+.++|+|||++++..+.
T Consensus       128 ------l~~~~~~~~fD~V~~d~~~~~~~~~l~~~~~~LkpGG~lv~~~~~  172 (248)
T 3tfw_A          128 ------LESLGECPAFDLIFIDADKPNNPHYLRWALRYSRPGTLIIGDNVV  172 (248)
T ss_dssp             ------HHTCCSCCCCSEEEECSCGGGHHHHHHHHHHTCCTTCEEEEECCS
T ss_pred             ------HHhcCCCCCeEEEEECCchHHHHHHHHHHHHhcCCCeEEEEeCCC
Confidence                  112222358999999998888888999999999999999997554

>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}

Probab=99.66  E-value=1.2e-15  Score=119.43  Aligned_cols=115  Identities=17%  Similarity=0.197  Sum_probs=95.6

Q ss_pred             ccCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccc
Q 026513           68 IKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVED  147 (237)
Q Consensus        68 ~~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  147 (237)
                      ..++.+|||+|||+|.++..+++ +..+++|+|+|+.+++.|++++..+++.+    +.++.+|+.+ .           
T Consensus        33 ~~~~~~vLdiG~G~G~~~~~l~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~----~~~~~~d~~~-~-----------   95 (183)
T 2yxd_A           33 LNKDDVVVDVGCGSGGMTVEIAK-RCKFVYAIDYLDGAIEVTKQNLAKFNIKN----CQIIKGRAED-V-----------   95 (183)
T ss_dssp             CCTTCEEEEESCCCSHHHHHHHT-TSSEEEEEECSHHHHHHHHHHHHHTTCCS----EEEEESCHHH-H-----------
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHHcCCCc----EEEEECCccc-c-----------
Confidence            35678999999999999999988 67889999999999999999999888754    8888998763 1           


Q ss_pred             cccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEeccCCCCHHHHHHHHhhc
Q 026513          148 LSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILSEQLPHIINRYSEF  211 (237)
Q Consensus       148 ~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~~~~~~~~~~~~~~~~~  211 (237)
                               .+.++||+|+++.+ .....+++.+.++  |||.+++.........++...+...
T Consensus        96 ---------~~~~~~D~i~~~~~-~~~~~~l~~~~~~--~gG~l~~~~~~~~~~~~~~~~l~~~  147 (183)
T 2yxd_A           96 ---------LDKLEFNKAFIGGT-KNIEKIIEILDKK--KINHIVANTIVLENAAKIINEFESR  147 (183)
T ss_dssp             ---------GGGCCCSEEEECSC-SCHHHHHHHHHHT--TCCEEEEEESCHHHHHHHHHHHHHT
T ss_pred             ---------ccCCCCcEEEECCc-ccHHHHHHHHhhC--CCCEEEEEecccccHHHHHHHHHHc
Confidence                     11368999999998 6677888888887  9999999876666667777777654

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21

Probab=99.66  E-value=3.4e-15  Score=123.49  Aligned_cols=104  Identities=20%  Similarity=0.232  Sum_probs=87.9

Q ss_pred             ccCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccc
Q 026513           68 IKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVED  147 (237)
Q Consensus        68 ~~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  147 (237)
                      +.++.+|||+|||+|.++..+++....+|+|+|+|+.+++.|++++...++..   ++.++++|+.+             
T Consensus        34 ~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~---~v~~~~~d~~~-------------   97 (256)
T 1nkv_A           34 MKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSE---RVHFIHNDAAG-------------   97 (256)
T ss_dssp             CCTTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTTCTT---TEEEEESCCTT-------------
T ss_pred             CCCCCEEEEECCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCc---ceEEEECChHh-------------
Confidence            46788999999999999999987645679999999999999999999888753   38888898763             


Q ss_pred             cccccccCCCCCCceeEEEEeCChHHH---HHHHHHHhHhcCCCeEEEEec
Q 026513          148 LSSHKIRGISQTEKYDVVIANILLNPL---LQLADHIVSYAKPGAVVGISG  195 (237)
Q Consensus       148 ~~~~~~~~~~~~~~fD~I~~n~~~~~~---~~~l~~~~~~L~~gG~liis~  195 (237)
                              ...+++||+|++..++++.   ..+++++.++|+|||.++++.
T Consensus        98 --------~~~~~~fD~V~~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~  140 (256)
T 1nkv_A           98 --------YVANEKCDVAACVGATWIAGGFAGAEELLAQSLKPGGIMLIGE  140 (256)
T ss_dssp             --------CCCSSCEEEEEEESCGGGTSSSHHHHHHHTTSEEEEEEEEEEE
T ss_pred             --------CCcCCCCCEEEECCChHhcCCHHHHHHHHHHHcCCCeEEEEec
Confidence                    1125789999998887665   578999999999999999964

>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}

Probab=99.66  E-value=5.3e-16  Score=121.52  Aligned_cols=127  Identities=20%  Similarity=0.175  Sum_probs=97.6

Q ss_pred             chhHHHHHHHHHhhccCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccc
Q 026513           54 HATTKLCLLLLRRLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTF  133 (237)
Q Consensus        54 ~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~  133 (237)
                      .+.+..+++.+.....++.+|||+|||+|.++..+++.+  +|+|+|+|+.+++.         ..    ++.++++|+.
T Consensus         7 ~~~~~~l~~~l~~~~~~~~~vLD~GcG~G~~~~~l~~~~--~v~gvD~s~~~~~~---------~~----~~~~~~~d~~   71 (170)
T 3q87_B            7 GEDTYTLMDALEREGLEMKIVLDLGTSTGVITEQLRKRN--TVVSTDLNIRALES---------HR----GGNLVRADLL   71 (170)
T ss_dssp             CHHHHHHHHHHHHHTCCSCEEEEETCTTCHHHHHHTTTS--EEEEEESCHHHHHT---------CS----SSCEEECSTT
T ss_pred             CccHHHHHHHHHhhcCCCCeEEEeccCccHHHHHHHhcC--cEEEEECCHHHHhc---------cc----CCeEEECChh
Confidence            556667777765433567799999999999999999887  89999999999987         11    2667888876


Q ss_pred             cccccccccccccccccccccCCCCCCceeEEEEeCChHH------------HHHHHHHHhHhcCCCeEEEEeccCCCCH
Q 026513          134 TASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLNP------------LLQLADHIVSYAKPGAVVGISGILSEQL  201 (237)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~~~------------~~~~l~~~~~~L~~gG~liis~~~~~~~  201 (237)
                      +                     ..++++||+|++|++++.            ...++..+.+.+ |||.+++........
T Consensus        72 ~---------------------~~~~~~fD~i~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-pgG~l~~~~~~~~~~  129 (170)
T 3q87_B           72 C---------------------SINQESVDVVVFNPPYVPDTDDPIIGGGYLGREVIDRFVDAV-TVGMLYLLVIEANRP  129 (170)
T ss_dssp             T---------------------TBCGGGCSEEEECCCCBTTCCCTTTBCCGGGCHHHHHHHHHC-CSSEEEEEEEGGGCH
T ss_pred             h---------------------hcccCCCCEEEECCCCccCCccccccCCcchHHHHHHHHhhC-CCCEEEEEEecCCCH
Confidence            3                     122478999999999763            245677788888 999999987777778


Q ss_pred             HHHHHHHhhc-ccccee
Q 026513          202 PHIINRYSEF-LEDILV  217 (237)
Q Consensus       202 ~~~~~~~~~~-~~~~~~  217 (237)
                      .++...+... |....+
T Consensus       130 ~~l~~~l~~~gf~~~~~  146 (170)
T 3q87_B          130 KEVLARLEERGYGTRIL  146 (170)
T ss_dssp             HHHHHHHHHTTCEEEEE
T ss_pred             HHHHHHHHHCCCcEEEE
Confidence            8888887764 655444

>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20

Probab=99.66  E-value=8.8e-16  Score=126.59  Aligned_cols=142  Identities=15%  Similarity=0.079  Sum_probs=102.6

Q ss_pred             cCCCeEEEEcCcchHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccc
Q 026513           69 KGGELFLDYGTGSGILGIAAIKF-GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVED  147 (237)
Q Consensus        69 ~~~~~vLDlG~G~G~~~~~la~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  147 (237)
                      .++.+|||+|||+|.+++.++.. +..+|+|+|+|+.+++.|++++..+++.+    +.++++|+.+...          
T Consensus        69 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~----v~~~~~d~~~~~~----------  134 (240)
T 1xdz_A           69 NQVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLEN----TTFCHDRAETFGQ----------  134 (240)
T ss_dssp             GGCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSS----EEEEESCHHHHTT----------
T ss_pred             CCCCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCC----EEEEeccHHHhcc----------
Confidence            46789999999999999998863 56789999999999999999999988875    8888998753110          


Q ss_pred             cccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEec-c-CCCCHHHHHHHHhhc-cccceeee-----
Q 026513          148 LSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISG-I-LSEQLPHIINRYSEF-LEDILVSE-----  219 (237)
Q Consensus       148 ~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~-~-~~~~~~~~~~~~~~~-~~~~~~~~-----  219 (237)
                             .....++||+|+++.. .....+++.+.++|+|||.+++.. . ..+...++...+... |...+...     
T Consensus       135 -------~~~~~~~fD~V~~~~~-~~~~~~l~~~~~~LkpgG~l~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~  206 (240)
T 1xdz_A          135 -------RKDVRESYDIVTARAV-ARLSVLSELCLPLVKKNGLFVALKAASAEEELNAGKKAITTLGGELENIHSFKLPI  206 (240)
T ss_dssp             -------CTTTTTCEEEEEEECC-SCHHHHHHHHGGGEEEEEEEEEEECC-CHHHHHHHHHHHHHTTEEEEEEEEEECTT
T ss_pred             -------cccccCCccEEEEecc-CCHHHHHHHHHHhcCCCCEEEEEeCCCchHHHHHHHHHHHHcCCeEeEEEEEecCC
Confidence                   0011468999999884 446788999999999999999862 2 222333455544443 44433321     


Q ss_pred             -cCCEEEEEEEEcc
Q 026513          220 -MDDWTCVSGKKKR  232 (237)
Q Consensus       220 -~~~w~~~~~~~~~  232 (237)
                       .+.+..+.++|..
T Consensus       207 ~~~~~~l~~~~k~~  220 (240)
T 1xdz_A          207 EESDRNIMVIRKIK  220 (240)
T ss_dssp             TCCEEEEEEEEECS
T ss_pred             CCCceEEEEEEecC
Confidence             3557777777643

>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...

Probab=99.66  E-value=4.6e-15  Score=120.68  Aligned_cols=122  Identities=13%  Similarity=0.218  Sum_probs=96.7

Q ss_pred             cCCCeEEEEcCcchHHHHHHHHh--CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccc
Q 026513           69 KGGELFLDYGTGSGILGIAAIKF--GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVE  146 (237)
Q Consensus        69 ~~~~~vLDlG~G~G~~~~~la~~--~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  146 (237)
                      .++.+|||+|||+|..++.+++.  +..+|+++|+++.+++.|++++...++.+   ++.++.+|..+..          
T Consensus        57 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~---~v~~~~~d~~~~l----------  123 (221)
T 3u81_A           57 YSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQD---KVTILNGASQDLI----------  123 (221)
T ss_dssp             HCCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGG---GEEEEESCHHHHG----------
T ss_pred             cCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcCCCC---ceEEEECCHHHHH----------
Confidence            46789999999999999999974  36789999999999999999999988864   4888999975311          


Q ss_pred             ccccccccCCC---CCCceeEEEEeCChHHHHH---HHHHHhHhcCCCeEEEEeccCCCCHHHHHHHHhhc
Q 026513          147 DLSSHKIRGIS---QTEKYDVVIANILLNPLLQ---LADHIVSYAKPGAVVGISGILSEQLPHIINRYSEF  211 (237)
Q Consensus       147 ~~~~~~~~~~~---~~~~fD~I~~n~~~~~~~~---~l~~~~~~L~~gG~liis~~~~~~~~~~~~~~~~~  211 (237)
                             ..+.   ..++||+|+++...+.+..   ++..+ ++|+|||++++..+......++...+...
T Consensus       124 -------~~~~~~~~~~~fD~V~~d~~~~~~~~~~~~~~~~-~~LkpgG~lv~~~~~~~~~~~~~~~l~~~  186 (221)
T 3u81_A          124 -------PQLKKKYDVDTLDMVFLDHWKDRYLPDTLLLEKC-GLLRKGTVLLADNVIVPGTPDFLAYVRGS  186 (221)
T ss_dssp             -------GGTTTTSCCCCCSEEEECSCGGGHHHHHHHHHHT-TCCCTTCEEEESCCCCCCCHHHHHHHHHC
T ss_pred             -------HHHHHhcCCCceEEEEEcCCcccchHHHHHHHhc-cccCCCeEEEEeCCCCcchHHHHHHHhhC
Confidence                   1111   1268999999998766653   45555 89999999999988777777888777754

>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}

Probab=99.66  E-value=1.1e-15  Score=127.85  Aligned_cols=146  Identities=14%  Similarity=0.143  Sum_probs=103.3

Q ss_pred             cCCCeEEEEcCcchHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHH---cCCCCCcceEEeccCcccccccccccccc
Q 026513           69 KGGELFLDYGTGSGILGIAAIKF-GAAMSVGADIDPQAIKSAHQNAAL---NNIGPKKMKLHLVPDRTFTASMNERVDGV  144 (237)
Q Consensus        69 ~~~~~vLDlG~G~G~~~~~la~~-~~~~v~~vD~s~~~i~~a~~~~~~---~~~~~~~~~v~~~~~d~~~~~~~~~~~~~  144 (237)
                      .++.+|||+|||+|.+++.++.. +..+|+|+|+++.+++.|++++..   +++.+   ++.++++|+.+....      
T Consensus        35 ~~~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~---~v~~~~~D~~~~~~~------  105 (260)
T 2ozv_A           35 DRACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAFSA---RIEVLEADVTLRAKA------  105 (260)
T ss_dssp             CSCEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHHHHHTTSGGGTTTGG---GEEEEECCTTCCHHH------
T ss_pred             cCCCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhhhhCCCcc---eEEEEeCCHHHHhhh------
Confidence            46789999999999999999876 457899999999999999999987   77654   488889998642100      


Q ss_pred             ccccccccccCCCCCCceeEEEEeCChHH---------------------HHHHHHHHhHhcCCCeEEEEeccCCCCHHH
Q 026513          145 VEDLSSHKIRGISQTEKYDVVIANILLNP---------------------LLQLADHIVSYAKPGAVVGISGILSEQLPH  203 (237)
Q Consensus       145 ~~~~~~~~~~~~~~~~~fD~I~~n~~~~~---------------------~~~~l~~~~~~L~~gG~liis~~~~~~~~~  203 (237)
                             ......+.++||+|++|||+..                     +..++..+.++|+|||.+++.. ......+
T Consensus       106 -------~~~~~~~~~~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~-~~~~~~~  177 (260)
T 2ozv_A          106 -------RVEAGLPDEHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQLSLIS-RPQSVAE  177 (260)
T ss_dssp             -------HHHTTCCTTCEEEEEECCCC---------------------CCHHHHHHHHHHHEEEEEEEEEEE-CGGGHHH
T ss_pred             -------hhhhccCCCCcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEEEEEE-cHHHHHH
Confidence                   0000123568999999998643                     3467899999999999999853 3345667


Q ss_pred             HHHHHhhccccceee-------ecCCEEEEEEEEc
Q 026513          204 IINRYSEFLEDILVS-------EMDDWTCVSGKKK  231 (237)
Q Consensus       204 ~~~~~~~~~~~~~~~-------~~~~w~~~~~~~~  231 (237)
                      +...+...|..+++.       .......+.++|.
T Consensus       178 ~~~~l~~~~~~~~i~~v~~~~~~~~~~~lv~~~k~  212 (260)
T 2ozv_A          178 IIAACGSRFGGLEITLIHPRPGEDAVRMLVTAIKG  212 (260)
T ss_dssp             HHHHHTTTEEEEEEEEEESSTTSCCCEEEEEEEET
T ss_pred             HHHHHHhcCCceEEEEEcCCCCCCceEEEEEEEeC
Confidence            777776544333321       1233455666653

>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}

Probab=99.66  E-value=5.3e-16  Score=128.43  Aligned_cols=109  Identities=16%  Similarity=0.193  Sum_probs=90.0

Q ss_pred             cCCCeEEEEcCcchHHHHHHHHh-C-CCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccc
Q 026513           69 KGGELFLDYGTGSGILGIAAIKF-G-AAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVE  146 (237)
Q Consensus        69 ~~~~~vLDlG~G~G~~~~~la~~-~-~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  146 (237)
                      .++.+|||+|||+|..++.+++. + ..+|+++|+++.+++.|++++...++.+   ++.++.+|..+..          
T Consensus        59 ~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~---~i~~~~gda~~~l----------  125 (242)
T 3r3h_A           59 TRAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEH---KIKLRLGPALDTL----------  125 (242)
T ss_dssp             HTCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTCTT---TEEEEESCHHHHH----------
T ss_pred             cCcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCC---cEEEEEcCHHHHH----------
Confidence            45679999999999999999974 3 5789999999999999999999988864   4889999976311          


Q ss_pred             ccccccccCCC---CCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEeccC
Q 026513          147 DLSSHKIRGIS---QTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGIL  197 (237)
Q Consensus       147 ~~~~~~~~~~~---~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~~~  197 (237)
                             ..+.   ..++||+|+++.....+..+++.+.++|+|||++++.++.
T Consensus       126 -------~~~~~~~~~~~fD~V~~d~~~~~~~~~l~~~~~~LkpGG~lv~d~~~  172 (242)
T 3r3h_A          126 -------HSLLNEGGEHQFDFIFIDADKTNYLNYYELALKLVTPKGLIAIDNIF  172 (242)
T ss_dssp             -------HHHHHHHCSSCEEEEEEESCGGGHHHHHHHHHHHEEEEEEEEEECSS
T ss_pred             -------HHHhhccCCCCEeEEEEcCChHHhHHHHHHHHHhcCCCeEEEEECCc
Confidence                   0010   0368999999999887888999999999999999997554

>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*

Probab=99.65  E-value=2.9e-15  Score=118.96  Aligned_cols=121  Identities=17%  Similarity=0.200  Sum_probs=94.4

Q ss_pred             cCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccccc
Q 026513           69 KGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDL  148 (237)
Q Consensus        69 ~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~  148 (237)
                      .++.+|||+|||+|.++..++..+ .+++|+|+|+.+++.|++++...++.+    +.++.+|+.+              
T Consensus        31 ~~~~~vLdiG~G~G~~~~~l~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~----~~~~~~d~~~--------------   91 (199)
T 2xvm_A           31 VKPGKTLDLGCGNGRNSLYLAANG-YDVDAWDKNAMSIANVERIKSIENLDN----LHTRVVDLNN--------------   91 (199)
T ss_dssp             SCSCEEEEETCTTSHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHHTCTT----EEEEECCGGG--------------
T ss_pred             cCCCeEEEEcCCCCHHHHHHHHCC-CeEEEEECCHHHHHHHHHHHHhCCCCC----cEEEEcchhh--------------
Confidence            356799999999999999999884 579999999999999999998888754    7888888763              


Q ss_pred             ccccccCCCCCCceeEEEEeCChHH-----HHHHHHHHhHhcCCCeEEEEeccC-------------CCCHHHHHHHHhh
Q 026513          149 SSHKIRGISQTEKYDVVIANILLNP-----LLQLADHIVSYAKPGAVVGISGIL-------------SEQLPHIINRYSE  210 (237)
Q Consensus       149 ~~~~~~~~~~~~~fD~I~~n~~~~~-----~~~~l~~~~~~L~~gG~liis~~~-------------~~~~~~~~~~~~~  210 (237)
                             ....++||+|+++.++++     ...++..+.++|+|||.+++....             .-...++...+..
T Consensus        92 -------~~~~~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  164 (199)
T 2xvm_A           92 -------LTFDRQYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAAMDTADYPCTVGFPFAFKEGELRRYYEG  164 (199)
T ss_dssp             -------CCCCCCEEEEEEESCGGGSCGGGHHHHHHHHHHTEEEEEEEEEEEEBCCSSSCCCSCCSCCBCTTHHHHHTTT
T ss_pred             -------CCCCCCceEEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEEeeccCCcCCCCCCCCccCHHHHHHHhcC
Confidence                   111578999999988764     357899999999999998775321             1145566666665


Q ss_pred             ccccce
Q 026513          211 FLEDIL  216 (237)
Q Consensus       211 ~~~~~~  216 (237)
                       |+.++
T Consensus       165 -f~~~~  169 (199)
T 2xvm_A          165 -WERVK  169 (199)
T ss_dssp             -SEEEE
T ss_pred             -CeEEE
Confidence             54444

>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*

Probab=99.65  E-value=1.2e-15  Score=136.19  Aligned_cols=137  Identities=23%  Similarity=0.271  Sum_probs=103.0

Q ss_pred             ceeEEeCcccccCCCCchhHHHHHHHHHhhccCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcC
Q 026513           38 ATNIILNPGLAFGSGEHATTKLCLLLLRRLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNN  117 (237)
Q Consensus        38 ~~~~~~~~~~~f~~g~~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~  117 (237)
                      ...+.++|+.+|+.+......+...++.  +.++.+|||+|||+|.+++.+++. ..+|+|+|+|+.+++.|++|+..++
T Consensus       260 g~~f~~~~~~F~q~n~~~~e~l~~~~~~--~~~~~~VLDlgcG~G~~sl~la~~-~~~V~gvD~s~~ai~~A~~n~~~ng  336 (425)
T 2jjq_A          260 DVDYLIHPNSFFQTNSYQAVNLVRKVSE--LVEGEKILDMYSGVGTFGIYLAKR-GFNVKGFDSNEFAIEMARRNVEINN  336 (425)
T ss_dssp             TEEEEECTTSCCCSBHHHHHHHHHHHHH--HCCSSEEEEETCTTTHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHHT
T ss_pred             CEEEEEccccccccCHHHHHHHHHHhhc--cCCCCEEEEeeccchHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHHcC
Confidence            4678888887776554444444333333  577889999999999999999987 5689999999999999999999888


Q ss_pred             CCCCcceEEeccCccccccccccccccccccccccccCCCCCCceeEEEEeCChHHHHH-HHHHHhHhcCCCeEEEEecc
Q 026513          118 IGPKKMKLHLVPDRTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLNPLLQ-LADHIVSYAKPGAVVGISGI  196 (237)
Q Consensus       118 ~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~-~l~~~~~~L~~gG~liis~~  196 (237)
                      +.     +.++.+|+.+                     ..+ .+||+|++|||+..... +++.+. .|+|+|.+|+||.
T Consensus       337 l~-----v~~~~~d~~~---------------------~~~-~~fD~Vv~dPPr~g~~~~~~~~l~-~l~p~givyvsc~  388 (425)
T 2jjq_A          337 VD-----AEFEVASDRE---------------------VSV-KGFDTVIVDPPRAGLHPRLVKRLN-REKPGVIVYVSCN  388 (425)
T ss_dssp             CC-----EEEEECCTTT---------------------CCC-TTCSEEEECCCTTCSCHHHHHHHH-HHCCSEEEEEESC
T ss_pred             Cc-----EEEEECChHH---------------------cCc-cCCCEEEEcCCccchHHHHHHHHH-hcCCCcEEEEECC
Confidence            64     7788898763                     111 28999999999754433 555444 5899999999986


Q ss_pred             CCCCHHHHH
Q 026513          197 LSEQLPHII  205 (237)
Q Consensus       197 ~~~~~~~~~  205 (237)
                      .....+++.
T Consensus       389 p~tlarDl~  397 (425)
T 2jjq_A          389 PETFARDVK  397 (425)
T ss_dssp             HHHHHHHHH
T ss_pred             hHHHHhHHh
Confidence            554444443

>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36

Probab=99.65  E-value=6.1e-16  Score=124.59  Aligned_cols=102  Identities=11%  Similarity=0.037  Sum_probs=78.4

Q ss_pred             ccCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHc------------CCCCCcceEEeccCccccc
Q 026513           68 IKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALN------------NIGPKKMKLHLVPDRTFTA  135 (237)
Q Consensus        68 ~~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~------------~~~~~~~~v~~~~~d~~~~  135 (237)
                      +.++.+|||+|||+|..+..+++.|. +|+|+|+|+.|++.|+++....            ...    ++.++++|+.+.
T Consensus        20 ~~~~~~vLD~GCG~G~~~~~la~~g~-~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~----~v~~~~~d~~~l   94 (203)
T 1pjz_A           20 VVPGARVLVPLCGKSQDMSWLSGQGY-HVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAP----GIEIWCGDFFAL   94 (203)
T ss_dssp             CCTTCEEEETTTCCSHHHHHHHHHCC-EEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECS----SSEEEEECCSSS
T ss_pred             cCCCCEEEEeCCCCcHhHHHHHHCCC-eEEEEeCCHHHHHHHHHHccCCcccccccccccccCC----ccEEEECccccC
Confidence            35788999999999999999998865 7999999999999999875421            112    377888887631


Q ss_pred             cccccccccccccccccccCCCCC-CceeEEEEeCChHHH-----HHHHHHHhHhcCCCeEEEEe
Q 026513          136 SMNERVDGVVEDLSSHKIRGISQT-EKYDVVIANILLNPL-----LQLADHIVSYAKPGAVVGIS  194 (237)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~-~~fD~I~~n~~~~~~-----~~~l~~~~~~L~~gG~liis  194 (237)
                      .                    ..+ ++||+|++...++++     ..+++++.++|+|||++++.
T Consensus        95 ~--------------------~~~~~~fD~v~~~~~l~~l~~~~~~~~l~~~~r~LkpgG~~~l~  139 (203)
T 1pjz_A           95 T--------------------ARDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLI  139 (203)
T ss_dssp             T--------------------HHHHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEE
T ss_pred             C--------------------cccCCCEEEEEECcchhhCCHHHHHHHHHHHHHHcCCCcEEEEE
Confidence            1                    112 689999998776443     35789999999999984443

>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53

Probab=99.65  E-value=1.1e-15  Score=123.94  Aligned_cols=120  Identities=13%  Similarity=0.083  Sum_probs=92.2

Q ss_pred             cCCCeEEEEcCcchHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccc
Q 026513           69 KGGELFLDYGTGSGILGIAAIKF-GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVED  147 (237)
Q Consensus        69 ~~~~~vLDlG~G~G~~~~~la~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  147 (237)
                      .++.+|||+|||+|.++..+++. +..+++|+|+|+.+++.|++++...++.+    +.++++|+.+.            
T Consensus        37 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l~~a~~~~~~~~~~n----v~~~~~d~~~l------------  100 (213)
T 2fca_A           37 NDNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQN----VKLLNIDADTL------------  100 (213)
T ss_dssp             SCCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSS----EEEECCCGGGH------------
T ss_pred             CCCceEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHHHHHHHHHHHcCCCC----EEEEeCCHHHH------------
Confidence            45789999999999999999875 56789999999999999999999888875    88999998631            


Q ss_pred             cccccccCCCCCCceeEEEEeCChHH-----------HHHHHHHHhHhcCCCeEEEEeccCCCCHHHHHHHHhh
Q 026513          148 LSSHKIRGISQTEKYDVVIANILLNP-----------LLQLADHIVSYAKPGAVVGISGILSEQLPHIINRYSE  210 (237)
Q Consensus       148 ~~~~~~~~~~~~~~fD~I~~n~~~~~-----------~~~~l~~~~~~L~~gG~liis~~~~~~~~~~~~~~~~  210 (237)
                            ....++++||.|+++.+..+           ...+++.+.++|+|||.+++.+........+...+..
T Consensus       101 ------~~~~~~~~~d~v~~~~~~p~~~~~~~~~rl~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~~~  168 (213)
T 2fca_A          101 ------TDVFEPGEVKRVYLNFSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKTDNRGLFEYSLKSFSE  168 (213)
T ss_dssp             ------HHHCCTTSCCEEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEESCHHHHHHHHHHHHH
T ss_pred             ------HhhcCcCCcCEEEEECCCCCcCccccccccCcHHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHH
Confidence                  11123568999998764211           3578999999999999999976443334444444443

>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}

Probab=99.64  E-value=3.9e-15  Score=121.17  Aligned_cols=111  Identities=20%  Similarity=0.320  Sum_probs=88.0

Q ss_pred             HhhccCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCC-cceEEeccCccccccccccccc
Q 026513           65 RRLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPK-KMKLHLVPDRTFTASMNERVDG  143 (237)
Q Consensus        65 ~~~~~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~-~~~v~~~~~d~~~~~~~~~~~~  143 (237)
                      ...++++.+|||+|||+|.++..++..+ .+|+|+|+|+.+++.|++++...++... .-++.++.+|..+.        
T Consensus        25 ~~~~~~~~~vLdiG~G~G~~~~~l~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~--------   95 (235)
T 3sm3_A           25 HNYLQEDDEILDIGCGSGKISLELASKG-YSVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSL--------   95 (235)
T ss_dssp             HHHCCTTCEEEEETCTTSHHHHHHHHTT-CEEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSC--------
T ss_pred             HHhCCCCCeEEEECCCCCHHHHHHHhCC-CeEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEeccccc--------
Confidence            3445788999999999999999999884 4799999999999999999887665321 11467888887531        


Q ss_pred             cccccccccccCCCCCCceeEEEEeCChHHH------HHHHHHHhHhcCCCeEEEEecc
Q 026513          144 VVEDLSSHKIRGISQTEKYDVVIANILLNPL------LQLADHIVSYAKPGAVVGISGI  196 (237)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~fD~I~~n~~~~~~------~~~l~~~~~~L~~gG~liis~~  196 (237)
                                  ..+.++||+|+++.+++++      ..+++.+.++|+|||.+++..+
T Consensus        96 ------------~~~~~~~D~v~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~  142 (235)
T 3sm3_A           96 ------------SFHDSSFDFAVMQAFLTSVPDPKERSRIIKEVFRVLKPGAYLYLVEF  142 (235)
T ss_dssp             ------------CSCTTCEEEEEEESCGGGCCCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             ------------CCCCCceeEEEEcchhhcCCCHHHHHHHHHHHHHHcCCCeEEEEEEC
Confidence                        1235789999999887654      2689999999999999999754

>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*

Probab=99.64  E-value=3.2e-15  Score=129.51  Aligned_cols=140  Identities=19%  Similarity=0.231  Sum_probs=105.6

Q ss_pred             ceeEEeCcccccCCCCchhHHHHHHHHHhhccCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcC
Q 026513           38 ATNIILNPGLAFGSGEHATTKLCLLLLRRLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNN  117 (237)
Q Consensus        38 ~~~~~~~~~~~f~~g~~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~  117 (237)
                      ...+.+++...|....+...+.   .+...+.+|.+|||+|||+|.+++. ++ +..+|+++|+|+.+++.|++|+..++
T Consensus       166 g~~f~~d~~~~~~~~~~~~er~---~i~~~~~~~~~VLDlg~G~G~~~l~-a~-~~~~V~~vD~s~~ai~~a~~n~~~n~  240 (336)
T 2yx1_A          166 GYRLWVDIAKVYFSPRLGGERA---RIMKKVSLNDVVVDMFAGVGPFSIA-CK-NAKKIYAIDINPHAIELLKKNIKLNK  240 (336)
T ss_dssp             TEEEEEETTTSCCCGGGHHHHH---HHHHHCCTTCEEEETTCTTSHHHHH-TT-TSSEEEEEESCHHHHHHHHHHHHHTT
T ss_pred             CEEEEEehHHhccCCccHHHHH---HHHHhcCCCCEEEEccCccCHHHHh-cc-CCCEEEEEECCHHHHHHHHHHHHHcC
Confidence            4566666775554443444443   2334456889999999999999999 87 68899999999999999999999999


Q ss_pred             CCCCcceEEeccCccccccccccccccccccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEeccC
Q 026513          118 IGPKKMKLHLVPDRTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGIL  197 (237)
Q Consensus       118 ~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~~~  197 (237)
                      +..   ++.++++|+.+                     ..  .+||+|++|+|... ..++..+.++|+|||.+++.++.
T Consensus       241 l~~---~v~~~~~D~~~---------------------~~--~~fD~Vi~dpP~~~-~~~l~~~~~~L~~gG~l~~~~~~  293 (336)
T 2yx1_A          241 LEH---KIIPILSDVRE---------------------VD--VKGNRVIMNLPKFA-HKFIDKALDIVEEGGVIHYYTIG  293 (336)
T ss_dssp             CTT---TEEEEESCGGG---------------------CC--CCEEEEEECCTTTG-GGGHHHHHHHEEEEEEEEEEEEE
T ss_pred             CCC---cEEEEECChHH---------------------hc--CCCcEEEECCcHhH-HHHHHHHHHHcCCCCEEEEEEee
Confidence            853   38899999863                     11  68999999987543 37888899999999999987654


Q ss_pred             CCCHHHHHHHHhh
Q 026513          198 SEQLPHIINRYSE  210 (237)
Q Consensus       198 ~~~~~~~~~~~~~  210 (237)
                      .. ...+...+..
T Consensus       294 ~~-~~~~~~~l~~  305 (336)
T 2yx1_A          294 KD-FDKAIKLFEK  305 (336)
T ss_dssp             SS-SHHHHHHHHH
T ss_pred             cC-chHHHHHHHH
Confidence            43 4445555543

>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0

Probab=99.64  E-value=2.7e-15  Score=121.95  Aligned_cols=112  Identities=14%  Similarity=0.154  Sum_probs=90.3

Q ss_pred             cCCCeEEEEcCcchHHHHHHHHh-C-CCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccc
Q 026513           69 KGGELFLDYGTGSGILGIAAIKF-G-AAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVE  146 (237)
Q Consensus        69 ~~~~~vLDlG~G~G~~~~~la~~-~-~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  146 (237)
                      .++.+|||+|||+|..+..++.. + ..+|+++|+++.+++.|++++...++.+   ++.++++|..+..         .
T Consensus        63 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~---~v~~~~~d~~~~~---------~  130 (225)
T 3tr6_A           63 MQAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSD---KIGLRLSPAKDTL---------A  130 (225)
T ss_dssp             HTCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTCTT---TEEEEESCHHHHH---------H
T ss_pred             hCCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCC---ceEEEeCCHHHHH---------H
Confidence            46779999999999999999975 3 6789999999999999999999988875   4888899875311         0


Q ss_pred             ccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEeccC
Q 026513          147 DLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGIL  197 (237)
Q Consensus       147 ~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~~~  197 (237)
                      .     .......++||+|+++.+...+..+++.+.++|+|||++++.++.
T Consensus       131 ~-----~~~~~~~~~fD~v~~~~~~~~~~~~l~~~~~~L~pgG~lv~~~~~  176 (225)
T 3tr6_A          131 E-----LIHAGQAWQYDLIYIDADKANTDLYYEESLKLLREGGLIAVDNVL  176 (225)
T ss_dssp             H-----HHTTTCTTCEEEEEECSCGGGHHHHHHHHHHHEEEEEEEEEECSS
T ss_pred             H-----hhhccCCCCccEEEECCCHHHHHHHHHHHHHhcCCCcEEEEeCCC
Confidence            0     000001168999999999888888999999999999999997554

>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*

Probab=99.64  E-value=3.7e-15  Score=122.61  Aligned_cols=117  Identities=12%  Similarity=0.170  Sum_probs=93.5

Q ss_pred             chhHHHHHHHHHhhccCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccc
Q 026513           54 HATTKLCLLLLRRLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTF  133 (237)
Q Consensus        54 ~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~  133 (237)
                      ++.....+..+.  +.++.+|||+|||+|.++..++..+ .+|+|+|+|+.+++.+++++...++.+    +.++.+|+.
T Consensus         7 ~~~~~~~~~~~~--~~~~~~vLDiGcG~G~~~~~l~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~----v~~~~~d~~   79 (239)
T 1xxl_A            7 HHSLGLMIKTAE--CRAEHRVLDIGAGAGHTALAFSPYV-QECIGVDATKEMVEVASSFAQEKGVEN----VRFQQGTAE   79 (239)
T ss_dssp             HHHHHHHHHHHT--CCTTCEEEEESCTTSHHHHHHGGGS-SEEEEEESCHHHHHHHHHHHHHHTCCS----EEEEECBTT
T ss_pred             CCCcchHHHHhC--cCCCCEEEEEccCcCHHHHHHHHhC-CEEEEEECCHHHHHHHHHHHHHcCCCC----eEEEecccc
Confidence            344444444443  5678999999999999999998875 489999999999999999998888764    888888875


Q ss_pred             cccccccccccccccccccccCCCCCCceeEEEEeCChHHH---HHHHHHHhHhcCCCeEEEEeccC
Q 026513          134 TASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLNPL---LQLADHIVSYAKPGAVVGISGIL  197 (237)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~~~~---~~~l~~~~~~L~~gG~liis~~~  197 (237)
                      +.                    ..++++||+|+++..+++.   ..++.++.++|+|||.+++....
T Consensus        80 ~~--------------------~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  126 (239)
T 1xxl_A           80 SL--------------------PFPDDSFDIITCRYAAHHFSDVRKAVREVARVLKQDGRFLLVDHY  126 (239)
T ss_dssp             BC--------------------CSCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             cC--------------------CCCCCcEEEEEECCchhhccCHHHHHHHHHHHcCCCcEEEEEEcC
Confidence            31                    1235789999999887654   57799999999999999997554

>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42

Probab=99.64  E-value=1.8e-15  Score=124.54  Aligned_cols=127  Identities=13%  Similarity=0.094  Sum_probs=97.5

Q ss_pred             CCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccccc
Q 026513           70 GGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDLS  149 (237)
Q Consensus        70 ~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~  149 (237)
                      ++.+|||+|||+|.++..++..+..+|+|+|+|+.+++.|++++...+..    .+.++.+|+.+.              
T Consensus        79 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~----~~~~~~~d~~~~--------------  140 (241)
T 2ex4_A           79 GTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGKR----VRNYFCCGLQDF--------------  140 (241)
T ss_dssp             CCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHHHTGGGGGG----EEEEEECCGGGC--------------
T ss_pred             CCCEEEEECCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHhhhcCCc----eEEEEEcChhhc--------------
Confidence            57899999999999999988776778999999999999999998765422    477888887531              


Q ss_pred             cccccCCCCCCceeEEEEeCChHH-----HHHHHHHHhHhcCCCeEEEEeccCCC--------------CHHHHHHHHhh
Q 026513          150 SHKIRGISQTEKYDVVIANILLNP-----LLQLADHIVSYAKPGAVVGISGILSE--------------QLPHIINRYSE  210 (237)
Q Consensus       150 ~~~~~~~~~~~~fD~I~~n~~~~~-----~~~~l~~~~~~L~~gG~liis~~~~~--------------~~~~~~~~~~~  210 (237)
                            ...+++||+|+++..+++     +..+++.+.++|+|||++++.+....              ...++...+.+
T Consensus       141 ------~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  214 (241)
T 2ex4_A          141 ------TPEPDSYDVIWIQWVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEGVILDDVDSSVCRDLDVVRRIICS  214 (241)
T ss_dssp             ------CCCSSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEBSSSEEEETTTTEEEEBHHHHHHHHHH
T ss_pred             ------CCCCCCEEEEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEEccCCCcceecccCCcccCCHHHHHHHHHH
Confidence                  122458999999988754     34689999999999999999654221              46677777765


Q ss_pred             c-cccceeeec
Q 026513          211 F-LEDILVSEM  220 (237)
Q Consensus       211 ~-~~~~~~~~~  220 (237)
                      . |+.++....
T Consensus       215 aGf~~~~~~~~  225 (241)
T 2ex4_A          215 AGLSLLAEERQ  225 (241)
T ss_dssp             TTCCEEEEEEC
T ss_pred             cCCeEEEeeec
Confidence            4 766665443

>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}

Probab=99.64  E-value=2.7e-15  Score=122.56  Aligned_cols=123  Identities=13%  Similarity=0.179  Sum_probs=96.0

Q ss_pred             chhHHHHHHHHHhhcc--CCCeEEEEcCcchHHHHHHHHh--CCCeEEEEeCCHHHHHHHHHHHHHcCCC-CCcceEEec
Q 026513           54 HATTKLCLLLLRRLIK--GGELFLDYGTGSGILGIAAIKF--GAAMSVGADIDPQAIKSAHQNAALNNIG-PKKMKLHLV  128 (237)
Q Consensus        54 ~~~~~~~~~~l~~~~~--~~~~vLDlG~G~G~~~~~la~~--~~~~v~~vD~s~~~i~~a~~~~~~~~~~-~~~~~v~~~  128 (237)
                      .+....++..+.....  ++.+|||+|||+|..++.+++.  +..+|+++|+|+.+++.|++++...++. .   ++.++
T Consensus        38 ~~~~~~~l~~l~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~---~i~~~  114 (221)
T 3dr5_A           38 DEMTGQLLTTLAATTNGNGSTGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYSPS---RVRFL  114 (221)
T ss_dssp             CHHHHHHHHHHHHHSCCTTCCEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTCCGG---GEEEE
T ss_pred             CHHHHHHHHHHHHhhCCCCCCCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcC---cEEEE
Confidence            3444455555544322  2349999999999999999874  3678999999999999999999998876 3   48899


Q ss_pred             cCccccccccccccccccccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEeccC
Q 026513          129 PDRTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGIL  197 (237)
Q Consensus       129 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~~~  197 (237)
                      .+|..+..                 ..+ .+++||+|+++.....+..+++.+.++|+|||++++..+.
T Consensus       115 ~gda~~~l-----------------~~~-~~~~fD~V~~d~~~~~~~~~l~~~~~~LkpGG~lv~dn~~  165 (221)
T 3dr5_A          115 LSRPLDVM-----------------SRL-ANDSYQLVFGQVSPMDLKALVDAAWPLLRRGGALVLADAL  165 (221)
T ss_dssp             CSCHHHHG-----------------GGS-CTTCEEEEEECCCTTTHHHHHHHHHHHEEEEEEEEETTTT
T ss_pred             EcCHHHHH-----------------HHh-cCCCcCeEEEcCcHHHHHHHHHHHHHHcCCCcEEEEeCCC
Confidence            99976311                 111 2478999999998888888999999999999999997553

>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}

Probab=99.64  E-value=7.5e-15  Score=120.49  Aligned_cols=107  Identities=12%  Similarity=0.156  Sum_probs=89.9

Q ss_pred             cCCCeEEEEcCcchHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccc
Q 026513           69 KGGELFLDYGTGSGILGIAAIKF-GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVED  147 (237)
Q Consensus        69 ~~~~~vLDlG~G~G~~~~~la~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  147 (237)
                      .++.+|||+|||+|..+..++.. +..+|+++|+++.+++.|++++...++.+   ++.++.+|+.+..           
T Consensus        70 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~---~v~~~~~d~~~~~-----------  135 (232)
T 3ntv_A           70 NNVKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQNLATYHFEN---QVRIIEGNALEQF-----------  135 (232)
T ss_dssp             HTCCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHHTTCTT---TEEEEESCGGGCH-----------
T ss_pred             cCCCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCC---cEEEEECCHHHHH-----------
Confidence            46789999999999999999974 46789999999999999999999988864   3889999986311           


Q ss_pred             cccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEecc
Q 026513          148 LSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGI  196 (237)
Q Consensus       148 ~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~~  196 (237)
                            .. ...++||+|+++.....+..+++.+.++|+|||++++..+
T Consensus       136 ------~~-~~~~~fD~V~~~~~~~~~~~~l~~~~~~LkpgG~lv~d~~  177 (232)
T 3ntv_A          136 ------EN-VNDKVYDMIFIDAAKAQSKKFFEIYTPLLKHQGLVITDNV  177 (232)
T ss_dssp             ------HH-HTTSCEEEEEEETTSSSHHHHHHHHGGGEEEEEEEEEECT
T ss_pred             ------Hh-hccCCccEEEEcCcHHHHHHHHHHHHHhcCCCeEEEEeeC
Confidence                  00 0146899999999888888899999999999999999644

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41

Probab=99.63  E-value=2.8e-15  Score=124.64  Aligned_cols=104  Identities=20%  Similarity=0.208  Sum_probs=87.2

Q ss_pred             ccCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccc
Q 026513           68 IKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVED  147 (237)
Q Consensus        68 ~~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  147 (237)
                      ..++.+|||+|||+|.++..++..+ .+|+|+|+|+.+++.|++++...++.+    +.++.+|+.+.            
T Consensus        35 ~~~~~~vLDiGcG~G~~~~~l~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~----v~~~~~d~~~l------------   97 (260)
T 1vl5_A           35 LKGNEEVLDVATGGGHVANAFAPFV-KKVVAFDLTEDILKVARAFIEGNGHQQ----VEYVQGDAEQM------------   97 (260)
T ss_dssp             CCSCCEEEEETCTTCHHHHHHGGGS-SEEEEEESCHHHHHHHHHHHHHTTCCS----EEEEECCC-CC------------
T ss_pred             CCCCCEEEEEeCCCCHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHhcCCCc----eEEEEecHHhC------------
Confidence            3578899999999999999998875 489999999999999999998887764    88888987631            


Q ss_pred             cccccccCCCCCCceeEEEEeCChHHH---HHHHHHHhHhcCCCeEEEEecc
Q 026513          148 LSSHKIRGISQTEKYDVVIANILLNPL---LQLADHIVSYAKPGAVVGISGI  196 (237)
Q Consensus       148 ~~~~~~~~~~~~~~fD~I~~n~~~~~~---~~~l~~~~~~L~~gG~liis~~  196 (237)
                              ..++++||+|+++..++++   ..++.++.++|+|||.+++...
T Consensus        98 --------~~~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~~~~~  141 (260)
T 1vl5_A           98 --------PFTDERFHIVTCRIAAHHFPNPASFVSEAYRVLKKGGQLLLVDN  141 (260)
T ss_dssp             --------CSCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             --------CCCCCCEEEEEEhhhhHhcCCHHHHHHHHHHHcCCCCEEEEEEc
Confidence                    1235799999999888665   4789999999999999999744

>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*

Probab=99.63  E-value=1.8e-15  Score=126.05  Aligned_cols=127  Identities=14%  Similarity=0.033  Sum_probs=89.9

Q ss_pred             cCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHH----------cCCC---CCcceEEeccCccccc
Q 026513           69 KGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAAL----------NNIG---PKKMKLHLVPDRTFTA  135 (237)
Q Consensus        69 ~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~----------~~~~---~~~~~v~~~~~d~~~~  135 (237)
                      .++.+|||+|||+|..+..+++.|. +|+|+|+|+.+++.|++....          .+..   ....++.++++|+.+.
T Consensus        67 ~~~~~vLD~GCG~G~~~~~La~~G~-~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~~l  145 (252)
T 2gb4_A           67 QSGLRVFFPLCGKAIEMKWFADRGH-TVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIFDL  145 (252)
T ss_dssp             CCSCEEEETTCTTCTHHHHHHHTTC-EEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTTTG
T ss_pred             CCCCeEEEeCCCCcHHHHHHHHCCC-eEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECccccC
Confidence            4688999999999999999999866 799999999999999866431          0000   0011488889998742


Q ss_pred             cccccccccccccccccccCCCCCCceeEEEEeCChHH-----HHHHHHHHhHhcCCCeEEEEeccC-----------CC
Q 026513          136 SMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLNP-----LLQLADHIVSYAKPGAVVGISGIL-----------SE  199 (237)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~~~-----~~~~l~~~~~~L~~gG~liis~~~-----------~~  199 (237)
                      .                   ....++||+|++...+++     ...+++.+.++|+|||++++.++.           .-
T Consensus       146 ~-------------------~~~~~~FD~V~~~~~l~~l~~~~~~~~l~~~~~~LkpGG~l~l~~~~~~~~~~~g~~~~~  206 (252)
T 2gb4_A          146 P-------------------RANIGKFDRIWDRGALVAINPGDHDRYADIILSLLRKEFQYLVAVLSYDPTKHAGPPFYV  206 (252)
T ss_dssp             G-------------------GGCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEEEECCTTSCCCSSCCC
T ss_pred             C-------------------cccCCCEEEEEEhhhhhhCCHHHHHHHHHHHHHHcCCCeEEEEEEEecCCccCCCCCCCC
Confidence            1                   111278999998776533     346899999999999999754321           12


Q ss_pred             CHHHHHHHHhhccccc
Q 026513          200 QLPHIINRYSEFLEDI  215 (237)
Q Consensus       200 ~~~~~~~~~~~~~~~~  215 (237)
                      ...++...+.+.|+.+
T Consensus       207 ~~~el~~~l~~~f~v~  222 (252)
T 2gb4_A          207 PSAELKRLFGTKCSMQ  222 (252)
T ss_dssp             CHHHHHHHHTTTEEEE
T ss_pred             CHHHHHHHhhCCeEEE
Confidence            4567777776555443

>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A

Probab=99.63  E-value=9.3e-15  Score=119.64  Aligned_cols=141  Identities=12%  Similarity=0.063  Sum_probs=99.4

Q ss_pred             ccCCCeEEEEcCcchHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccc
Q 026513           68 IKGGELFLDYGTGSGILGIAAIKF-GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVE  146 (237)
Q Consensus        68 ~~~~~~vLDlG~G~G~~~~~la~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  146 (237)
                      +.++.+|||+|||+|.++..+++. |..+|+|+|+|+.+++.|++++..+  .    ++.++.+|..++..         
T Consensus        72 ~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~--~----~v~~~~~d~~~~~~---------  136 (230)
T 1fbn_A           72 IKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAER--E----NIIPILGDANKPQE---------  136 (230)
T ss_dssp             CCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTC--T----TEEEEECCTTCGGG---------
T ss_pred             CCCCCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhhcC--C----CeEEEECCCCCccc---------
Confidence            457889999999999999999976 6678999999999999999987654  3    37788888763110         


Q ss_pred             ccccccccCCCCCCceeEEEEeCChH-HHHHHHHHHhHhcCCCeEEEEe----ccCCC------CHHHHHHHHhh-cccc
Q 026513          147 DLSSHKIRGISQTEKYDVVIANILLN-PLLQLADHIVSYAKPGAVVGIS----GILSE------QLPHIINRYSE-FLED  214 (237)
Q Consensus       147 ~~~~~~~~~~~~~~~fD~I~~n~~~~-~~~~~l~~~~~~L~~gG~liis----~~~~~------~~~~~~~~~~~-~~~~  214 (237)
                              ......+||+|+++.+.. ....++..+.+.|+|||+++++    +....      ...++. .+.. .|..
T Consensus       137 --------~~~~~~~~D~v~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~l~-~l~~~Gf~~  207 (230)
T 1fbn_A          137 --------YANIVEKVDVIYEDVAQPNQAEILIKNAKWFLKKGGYGMIAIKARSIDVTKDPKEIFKEQKE-ILEAGGFKI  207 (230)
T ss_dssp             --------GTTTSCCEEEEEECCCSTTHHHHHHHHHHHHEEEEEEEEEEEEGGGTCSSSCHHHHHHHHHH-HHHHHTEEE
T ss_pred             --------ccccCccEEEEEEecCChhHHHHHHHHHHHhCCCCcEEEEEEecCCCCCCCCHHHhhHHHHH-HHHHCCCEE
Confidence                    011126899999876533 3356789999999999999995    22111      113444 4444 4766


Q ss_pred             ceeeecCC----EEEEEEEEcc
Q 026513          215 ILVSEMDD----WTCVSGKKKR  232 (237)
Q Consensus       215 ~~~~~~~~----w~~~~~~~~~  232 (237)
                      ++......    +..++++|++
T Consensus       208 ~~~~~~~~~~~~~~~v~~~k~~  229 (230)
T 1fbn_A          208 VDEVDIEPFEKDHVMFVGIWEG  229 (230)
T ss_dssp             EEEEECTTTSTTEEEEEEEECC
T ss_pred             EEEEccCCCccceEEEEEEeCC
Confidence            66654433    5677777754

>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=99.63  E-value=9.8e-16  Score=126.25  Aligned_cols=105  Identities=12%  Similarity=0.083  Sum_probs=83.4

Q ss_pred             hccCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccc
Q 026513           67 LIKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVE  146 (237)
Q Consensus        67 ~~~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  146 (237)
                      ...+|.+|||||||+|..+..+++....+++++|+|+.+++.|+++....+.     .+.++.+|+.+.           
T Consensus        57 ~~~~G~rVLdiG~G~G~~~~~~~~~~~~~v~~id~~~~~~~~a~~~~~~~~~-----~~~~~~~~a~~~-----------  120 (236)
T 3orh_A           57 ASSKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQTH-----KVIPLKGLWEDV-----------  120 (236)
T ss_dssp             HTTTCEEEEEECCTTSHHHHHHTTSCEEEEEEEECCHHHHHHHHHHGGGCSS-----EEEEEESCHHHH-----------
T ss_pred             hccCCCeEEEECCCccHHHHHHHHhCCcEEEEEeCCHHHHHHHHHHHhhCCC-----ceEEEeehHHhh-----------
Confidence            3578899999999999999999887667899999999999999999877654     377778876521           


Q ss_pred             ccccccccCCCCCCceeEEEEeCCh--------HHHHHHHHHHhHhcCCCeEEEEe
Q 026513          147 DLSSHKIRGISQTEKYDVVIANILL--------NPLLQLADHIVSYAKPGAVVGIS  194 (237)
Q Consensus       147 ~~~~~~~~~~~~~~~fD~I~~n~~~--------~~~~~~l~~~~~~L~~gG~liis  194 (237)
                             ....++.+||.|+++...        .....+++++.++|||||++++.
T Consensus       121 -------~~~~~~~~FD~i~~D~~~~~~~~~~~~~~~~~~~e~~rvLkPGG~l~f~  169 (236)
T 3orh_A          121 -------APTLPDGHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYC  169 (236)
T ss_dssp             -------GGGSCTTCEEEEEECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEEC
T ss_pred             -------cccccccCCceEEEeeeecccchhhhcchhhhhhhhhheeCCCCEEEEE
Confidence                   112346789999987652        23456789999999999999884

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}

Probab=99.63  E-value=9.8e-15  Score=119.25  Aligned_cols=101  Identities=20%  Similarity=0.231  Sum_probs=83.8

Q ss_pred             cCCCeEEEEcCcchHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccc
Q 026513           69 KGGELFLDYGTGSGILGIAAIKF-GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVED  147 (237)
Q Consensus        69 ~~~~~vLDlG~G~G~~~~~la~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  147 (237)
                      .++.+|||+|||+|.++..++.. +..+++|+|+|+.+++.|++++...+      ++.++++|+.+             
T Consensus        43 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~------~~~~~~~d~~~-------------  103 (234)
T 3dtn_A           43 TENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGNL------KVKYIEADYSK-------------  103 (234)
T ss_dssp             CSSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTCSCT------TEEEEESCTTT-------------
T ss_pred             CCCCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhhccCC------CEEEEeCchhc-------------
Confidence            46789999999999999999876 46789999999999999998876544      38888998763             


Q ss_pred             cccccccCCCCCCceeEEEEeCChHHHH-----HHHHHHhHhcCCCeEEEEecc
Q 026513          148 LSSHKIRGISQTEKYDVVIANILLNPLL-----QLADHIVSYAKPGAVVGISGI  196 (237)
Q Consensus       148 ~~~~~~~~~~~~~~fD~I~~n~~~~~~~-----~~l~~~~~~L~~gG~liis~~  196 (237)
                              ....++||+|+++.+++++.     .+++++.++|+|||.+++++.
T Consensus       104 --------~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  149 (234)
T 3dtn_A          104 --------YDFEEKYDMVVSALSIHHLEDEDKKELYKRSYSILKESGIFINADL  149 (234)
T ss_dssp             --------CCCCSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             --------cCCCCCceEEEEeCccccCCHHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence                    22237899999999876652     479999999999999999764

>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20

Probab=99.62  E-value=4e-15  Score=119.34  Aligned_cols=134  Identities=17%  Similarity=0.062  Sum_probs=99.1

Q ss_pred             CCCeEEEEcCcchHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccccc
Q 026513           70 GGELFLDYGTGSGILGIAAIKF-GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDL  148 (237)
Q Consensus        70 ~~~~vLDlG~G~G~~~~~la~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~  148 (237)
                      ++.+|||+|||+|.++..++.. +..+++++|+|+.+++.|++++...++.+    +.+.++|+.+              
T Consensus        65 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~----v~~~~~d~~~--------------  126 (207)
T 1jsx_A           65 QGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLEN----IEPVQSRVEE--------------  126 (207)
T ss_dssp             CSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSS----EEEEECCTTT--------------
T ss_pred             CCCeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCC----eEEEecchhh--------------
Confidence            4789999999999999999875 66789999999999999999999888765    7888888763              


Q ss_pred             ccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEeccCCCCHHHHHHHHhhcccccee-----ee-cCC
Q 026513          149 SSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILSEQLPHIINRYSEFLEDILV-----SE-MDD  222 (237)
Q Consensus       149 ~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~~~~~~~~~~~~~~~~~~~~~~~-----~~-~~~  222 (237)
                             ..+.++||+|+++.. +....++..+.++|+|||.+++..-. ....++...+. .|..+..     .. .+.
T Consensus       127 -------~~~~~~~D~i~~~~~-~~~~~~l~~~~~~L~~gG~l~~~~~~-~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~  196 (207)
T 1jsx_A          127 -------FPSEPPFDGVISRAF-ASLNDMVSWCHHLPGEQGRFYALKGQ-MPEDEIALLPE-EYQVESVVKLQVPALDGE  196 (207)
T ss_dssp             -------SCCCSCEEEEECSCS-SSHHHHHHHHTTSEEEEEEEEEEESS-CCHHHHHTSCT-TEEEEEEEEEECC--CCE
T ss_pred             -------CCccCCcCEEEEecc-CCHHHHHHHHHHhcCCCcEEEEEeCC-CchHHHHHHhc-CCceeeeeeeccCCCCCc
Confidence                   223468999999764 55678899999999999999986322 23344443333 4444431     12 344


Q ss_pred             EEEEEEEEc
Q 026513          223 WTCVSGKKK  231 (237)
Q Consensus       223 w~~~~~~~~  231 (237)
                      ...+.++|+
T Consensus       197 ~~~~~~~k~  205 (207)
T 1jsx_A          197 RHLVVIKAN  205 (207)
T ss_dssp             EEEEEEEEC
T ss_pred             eEEEEEEec
Confidence            555666654

>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=99.62  E-value=1.4e-14  Score=114.32  Aligned_cols=139  Identities=18%  Similarity=0.137  Sum_probs=101.1

Q ss_pred             HHHhhccCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccc
Q 026513           63 LLRRLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVD  142 (237)
Q Consensus        63 ~l~~~~~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~  142 (237)
                      ++...++++.+|||+|||+|.++..++..+ .+++++|+++.+++.+++++.     +    +.++.+|+.+.       
T Consensus        39 ~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~-~~v~~~D~~~~~~~~a~~~~~-----~----~~~~~~d~~~~-------  101 (195)
T 3cgg_A           39 LIDAMAPRGAKILDAGCGQGRIGGYLSKQG-HDVLGTDLDPILIDYAKQDFP-----E----ARWVVGDLSVD-------  101 (195)
T ss_dssp             HHHHHSCTTCEEEEETCTTTHHHHHHHHTT-CEEEEEESCHHHHHHHHHHCT-----T----SEEEECCTTTS-------
T ss_pred             HHHHhccCCCeEEEECCCCCHHHHHHHHCC-CcEEEEcCCHHHHHHHHHhCC-----C----CcEEEcccccC-------
Confidence            333446788999999999999999999884 579999999999999998752     1    56777777531       


Q ss_pred             ccccccccccccCCCCCCceeEEEEe-CChHH-----HHHHHHHHhHhcCCCeEEEEeccCC--CCHHHHHHHHhhc-cc
Q 026513          143 GVVEDLSSHKIRGISQTEKYDVVIAN-ILLNP-----LLQLADHIVSYAKPGAVVGISGILS--EQLPHIINRYSEF-LE  213 (237)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~fD~I~~n-~~~~~-----~~~~l~~~~~~L~~gG~liis~~~~--~~~~~~~~~~~~~-~~  213 (237)
                                   ..+.++||+|+++ ..+++     ...++..+.+.|+|||.+++.....  ....++...+... |.
T Consensus       102 -------------~~~~~~~D~i~~~~~~~~~~~~~~~~~~l~~~~~~l~~~G~l~~~~~~~~~~~~~~~~~~l~~~Gf~  168 (195)
T 3cgg_A          102 -------------QISETDFDLIVSAGNVMGFLAEDGREPALANIHRALGADGRAVIGFGAGRGWVFGDFLEVAERVGLE  168 (195)
T ss_dssp             -------------CCCCCCEEEEEECCCCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEETTSSCCHHHHHHHHHHHTEE
T ss_pred             -------------CCCCCceeEEEECCcHHhhcChHHHHHHHHHHHHHhCCCCEEEEEeCCCCCcCHHHHHHHHHHcCCE
Confidence                         1225689999998 44433     3678999999999999999974432  3566677666543 55


Q ss_pred             cceee---------ecCCEEEEEEEEc
Q 026513          214 DILVS---------EMDDWTCVSGKKK  231 (237)
Q Consensus       214 ~~~~~---------~~~~w~~~~~~~~  231 (237)
                      .+...         ....|..++++|+
T Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~v~~k~  195 (195)
T 3cgg_A          169 LENAFESWDLKPFVQGSEFLVAVFTKK  195 (195)
T ss_dssp             EEEEESSTTCCBCCTTCSEEEEEEEEC
T ss_pred             EeeeecccccCcCCCCCcEEEEEEecC
Confidence            44432         2456777877764

>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}

Probab=99.62  E-value=7.3e-15  Score=123.75  Aligned_cols=109  Identities=17%  Similarity=0.224  Sum_probs=88.1

Q ss_pred             HHhhccCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccc
Q 026513           64 LRRLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDG  143 (237)
Q Consensus        64 l~~~~~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~  143 (237)
                      +.....++.+|||+|||+|.++..++.. ..+|+|+|+|+.+++.|++++...++..   ++.++.+|+.+..       
T Consensus        62 l~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~---~v~~~~~d~~~~~-------  130 (285)
T 4htf_A           62 LAEMGPQKLRVLDAGGGEGQTAIKMAER-GHQVILCDLSAQMIDRAKQAAEAKGVSD---NMQFIHCAAQDVA-------  130 (285)
T ss_dssp             HHHTCSSCCEEEEETCTTCHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHC-CCGG---GEEEEESCGGGTG-------
T ss_pred             HHhcCCCCCEEEEeCCcchHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcCCCc---ceEEEEcCHHHhh-------
Confidence            3333445779999999999999999988 4579999999999999999998887743   4888899886321       


Q ss_pred             cccccccccccCCCCCCceeEEEEeCChHHH---HHHHHHHhHhcCCCeEEEEec
Q 026513          144 VVEDLSSHKIRGISQTEKYDVVIANILLNPL---LQLADHIVSYAKPGAVVGISG  195 (237)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~fD~I~~n~~~~~~---~~~l~~~~~~L~~gG~liis~  195 (237)
                                 . ..+++||+|+++.+++++   ..+++.+.++|+|||.+++..
T Consensus       131 -----------~-~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~  173 (285)
T 4htf_A          131 -----------S-HLETPVDLILFHAVLEWVADPRSVLQTLWSVLRPGGVLSLMF  173 (285)
T ss_dssp             -----------G-GCSSCEEEEEEESCGGGCSCHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             -----------h-hcCCCceEEEECchhhcccCHHHHHHHHHHHcCCCeEEEEEE
Confidence                       1 135799999999988654   578999999999999999964

>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}

Probab=99.62  E-value=4.4e-15  Score=121.58  Aligned_cols=132  Identities=17%  Similarity=0.141  Sum_probs=98.1

Q ss_pred             HHHHHhhccCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccc
Q 026513           61 LLLLRRLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNER  140 (237)
Q Consensus        61 ~~~l~~~~~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~  140 (237)
                      ...+.....++.+|||+|||+|.++..++.. ..+|+|+|+|+.+++.|++++...+...   ++.++++|+.+      
T Consensus        57 ~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~---~v~~~~~d~~~------  126 (235)
T 3lcc_A           57 VHLVDTSSLPLGRALVPGCGGGHDVVAMASP-ERFVVGLDISESALAKANETYGSSPKAE---YFSFVKEDVFT------  126 (235)
T ss_dssp             HHHHHTTCSCCEEEEEETCTTCHHHHHHCBT-TEEEEEECSCHHHHHHHHHHHTTSGGGG---GEEEECCCTTT------
T ss_pred             HHHHHhcCCCCCCEEEeCCCCCHHHHHHHhC-CCeEEEEECCHHHHHHHHHHhhccCCCc---ceEEEECchhc------
Confidence            3444433334459999999999999998875 4569999999999999999987643322   48899999863      


Q ss_pred             ccccccccccccccCCCCCCceeEEEEeCChHH-----HHHHHHHHhHhcCCCeEEEEeccCC----------CCHHHHH
Q 026513          141 VDGVVEDLSSHKIRGISQTEKYDVVIANILLNP-----LLQLADHIVSYAKPGAVVGISGILS----------EQLPHII  205 (237)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~~~-----~~~~l~~~~~~L~~gG~liis~~~~----------~~~~~~~  205 (237)
                                     +.+..+||+|+++.++++     ...+++.+.++|+|||.+++..+..          ....++.
T Consensus       127 ---------------~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~  191 (235)
T 3lcc_A          127 ---------------WRPTELFDLIFDYVFFCAIEPEMRPAWAKSMYELLKPDGELITLMYPITDHVGGPPYKVDVSTFE  191 (235)
T ss_dssp             ---------------CCCSSCEEEEEEESSTTTSCGGGHHHHHHHHHHHEEEEEEEEEEECCCSCCCSCSSCCCCHHHHH
T ss_pred             ---------------CCCCCCeeEEEEChhhhcCCHHHHHHHHHHHHHHCCCCcEEEEEEecccccCCCCCccCCHHHHH
Confidence                           223569999999887654     4578999999999999999865422          2456777


Q ss_pred             HHHhhc-ccccee
Q 026513          206 NRYSEF-LEDILV  217 (237)
Q Consensus       206 ~~~~~~-~~~~~~  217 (237)
                      ..+... |+.+++
T Consensus       192 ~~l~~~Gf~~~~~  204 (235)
T 3lcc_A          192 EVLVPIGFKAVSV  204 (235)
T ss_dssp             HHHGGGTEEEEEE
T ss_pred             HHHHHcCCeEEEE
Confidence            777654 665544

>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=99.62  E-value=1e-14  Score=118.35  Aligned_cols=113  Identities=19%  Similarity=0.175  Sum_probs=89.1

Q ss_pred             HHHHHHHHHhhccCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccc
Q 026513           57 TKLCLLLLRRLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTAS  136 (237)
Q Consensus        57 ~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~  136 (237)
                      ...+...+...+.++.+|||+|||+|.++..+++.+. +++|+|+|+.+++.|++++..++ .    ++.++.+|+.+. 
T Consensus        25 ~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~-~----~~~~~~~d~~~~-   97 (227)
T 1ve3_A           25 IETLEPLLMKYMKKRGKVLDLACGVGGFSFLLEDYGF-EVVGVDISEDMIRKAREYAKSRE-S----NVEFIVGDARKL-   97 (227)
T ss_dssp             HHHHHHHHHHSCCSCCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTT-C----CCEEEECCTTSC-
T ss_pred             HHHHHHHHHHhcCCCCeEEEEeccCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcC-C----CceEEECchhcC-
Confidence            3444455555556788999999999999999988755 89999999999999999988776 3    377888887631 


Q ss_pred             ccccccccccccccccccCCCCCCceeEEEEeCC--hHH---HHHHHHHHhHhcCCCeEEEEec
Q 026513          137 MNERVDGVVEDLSSHKIRGISQTEKYDVVIANIL--LNP---LLQLADHIVSYAKPGAVVGISG  195 (237)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~--~~~---~~~~l~~~~~~L~~gG~liis~  195 (237)
                                         ..+.++||+|+++.+  ..+   ...++..+.++|+|||.+++..
T Consensus        98 -------------------~~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~  142 (227)
T 1ve3_A           98 -------------------SFEDKTFDYVIFIDSIVHFEPLELNQVFKEVRRVLKPSGKFIMYF  142 (227)
T ss_dssp             -------------------CSCTTCEEEEEEESCGGGCCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             -------------------CCCCCcEEEEEEcCchHhCCHHHHHHHHHHHHHHcCCCcEEEEEe
Confidence                               123568999999988  432   3568999999999999999863

>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}

Probab=99.62  E-value=2.8e-15  Score=120.42  Aligned_cols=113  Identities=16%  Similarity=0.117  Sum_probs=89.9

Q ss_pred             HHHHHHhhccCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccc
Q 026513           60 CLLLLRRLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNE  139 (237)
Q Consensus        60 ~~~~l~~~~~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~  139 (237)
                      +...+...+.++.+|||+|||+|.++..+++.+..+++|+|+|+.+++.|++++..  ..    ++.++.+|+.+.    
T Consensus        32 ~~~~l~~~~~~~~~vLdiGcG~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~~~--~~----~i~~~~~d~~~~----  101 (215)
T 2pxx_A           32 FRALLEPELRPEDRILVLGCGNSALSYELFLGGFPNVTSVDYSSVVVAAMQACYAH--VP----QLRWETMDVRKL----  101 (215)
T ss_dssp             HHHHHGGGCCTTCCEEEETCTTCSHHHHHHHTTCCCEEEEESCHHHHHHHHHHTTT--CT----TCEEEECCTTSC----
T ss_pred             HHHHHHHhcCCCCeEEEECCCCcHHHHHHHHcCCCcEEEEeCCHHHHHHHHHhccc--CC----CcEEEEcchhcC----
Confidence            55566666678899999999999999999988766899999999999999988753  12    267778887631    


Q ss_pred             cccccccccccccccCCCCCCceeEEEEeCChHHH------------------HHHHHHHhHhcCCCeEEEEeccCC
Q 026513          140 RVDGVVEDLSSHKIRGISQTEKYDVVIANILLNPL------------------LQLADHIVSYAKPGAVVGISGILS  198 (237)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~~~~------------------~~~l~~~~~~L~~gG~liis~~~~  198 (237)
                                      ..++++||+|+++.+++.+                  ..++..+.++|+|||.+++..+..
T Consensus       102 ----------------~~~~~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~  162 (215)
T 2pxx_A          102 ----------------DFPSASFDVVLEKGTLDALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTSAA  162 (215)
T ss_dssp             ----------------CSCSSCEEEEEEESHHHHHTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred             ----------------CCCCCcccEEEECcchhhhccccccccccccchhHHHHHHHHHHHHhCcCCCEEEEEeCCC
Confidence                            1235689999999876443                  467999999999999999986543

>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*

Probab=99.62  E-value=4e-15  Score=123.30  Aligned_cols=124  Identities=20%  Similarity=0.275  Sum_probs=99.4

Q ss_pred             ccCCCeEEEEcCcchHHHHHHHHh-C-CCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccc
Q 026513           68 IKGGELFLDYGTGSGILGIAAIKF-G-AAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVV  145 (237)
Q Consensus        68 ~~~~~~vLDlG~G~G~~~~~la~~-~-~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  145 (237)
                      +.++.+|||+|||+|.++..+++. + ..+++++|+++.+++.|++++...++.+   ++.++.+|+.+           
T Consensus        91 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~---~v~~~~~d~~~-----------  156 (255)
T 3mb5_A           91 ISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDD---RVTIKLKDIYE-----------  156 (255)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTCTT---TEEEECSCGGG-----------
T ss_pred             CCCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCCCC---ceEEEECchhh-----------
Confidence            467889999999999999999876 4 6889999999999999999999988765   48888999863           


Q ss_pred             cccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEeccCCCCHHHHHHHHhhc---ccccee
Q 026513          146 EDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILSEQLPHIINRYSEF---LEDILV  217 (237)
Q Consensus       146 ~~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~~~~~~~~~~~~~~~~~---~~~~~~  217 (237)
                                ..+..+||+|+++++..  ..+++.+.+.|+|||.+++.....++..++...+...   |..++.
T Consensus       157 ----------~~~~~~~D~v~~~~~~~--~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~~g~~f~~~~~  219 (255)
T 3mb5_A          157 ----------GIEEENVDHVILDLPQP--ERVVEHAAKALKPGGFFVAYTPCSNQVMRLHEKLREFKDYFMKPRT  219 (255)
T ss_dssp             ----------CCCCCSEEEEEECSSCG--GGGHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHHTGGGBSCCEE
T ss_pred             ----------ccCCCCcCEEEECCCCH--HHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCccccEE
Confidence                      22356899999988643  4578999999999999999866555666666666543   555544

>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*

Probab=99.62  E-value=5.1e-15  Score=123.20  Aligned_cols=109  Identities=15%  Similarity=0.125  Sum_probs=85.9

Q ss_pred             hHHHHHHHHHhhccCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccc
Q 026513           56 TTKLCLLLLRRLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTA  135 (237)
Q Consensus        56 ~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~  135 (237)
                      ....+...+....+++.+|||+|||+|.++..+++.+ .+|+|+|+|+.+++.|++++.         ++.++++|+.+ 
T Consensus        36 ~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~v~gvD~s~~~~~~a~~~~~---------~~~~~~~d~~~-  104 (263)
T 3pfg_A           36 EAADLAALVRRHSPKAASLLDVACGTGMHLRHLADSF-GTVEGLELSADMLAIARRRNP---------DAVLHHGDMRD-  104 (263)
T ss_dssp             HHHHHHHHHHHHCTTCCEEEEETCTTSHHHHHHTTTS-SEEEEEESCHHHHHHHHHHCT---------TSEEEECCTTT-
T ss_pred             HHHHHHHHHHhhCCCCCcEEEeCCcCCHHHHHHHHcC-CeEEEEECCHHHHHHHHhhCC---------CCEEEECChHH-
Confidence            3345555555556677899999999999999998875 579999999999999998743         26678888763 


Q ss_pred             cccccccccccccccccccCCCCCCceeEEEEeC-ChHHH------HHHHHHHhHhcCCCeEEEEec
Q 026513          136 SMNERVDGVVEDLSSHKIRGISQTEKYDVVIANI-LLNPL------LQLADHIVSYAKPGAVVGISG  195 (237)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~-~~~~~------~~~l~~~~~~L~~gG~liis~  195 (237)
                                          +..+++||+|+++. +++++      ..+++++.++|+|||.++++.
T Consensus       105 --------------------~~~~~~fD~v~~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~i~~  151 (263)
T 3pfg_A          105 --------------------FSLGRRFSAVTCMFSSIGHLAGQAELDAALERFAAHVLPDGVVVVEP  151 (263)
T ss_dssp             --------------------CCCSCCEEEEEECTTGGGGSCHHHHHHHHHHHHHHTEEEEEEEEECC
T ss_pred             --------------------CCccCCcCEEEEcCchhhhcCCHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence                                22257999999987 66543      367999999999999999963

>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A

Probab=99.61  E-value=1.2e-14  Score=117.66  Aligned_cols=107  Identities=16%  Similarity=0.176  Sum_probs=84.2

Q ss_pred             cCCCeEEEEcCcchHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHHcCCCCC-cceEEeccCcccccccccccccccc
Q 026513           69 KGGELFLDYGTGSGILGIAAIKF-GAAMSVGADIDPQAIKSAHQNAALNNIGPK-KMKLHLVPDRTFTASMNERVDGVVE  146 (237)
Q Consensus        69 ~~~~~vLDlG~G~G~~~~~la~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~-~~~v~~~~~d~~~~~~~~~~~~~~~  146 (237)
                      .++.+|||+|||+|.++..+++. +..+++|+|+|+.+++.|++++..+++... ..++.++++|+...           
T Consensus        28 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~-----------   96 (217)
T 3jwh_A           28 SNARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGALTYQ-----------   96 (217)
T ss_dssp             TTCCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCTTSC-----------
T ss_pred             cCCCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCcccc-----------
Confidence            46789999999999999999986 447899999999999999999887766410 00277888886421           


Q ss_pred             ccccccccCCCCCCceeEEEEeCChHH-----HHHHHHHHhHhcCCCeEEEEec
Q 026513          147 DLSSHKIRGISQTEKYDVVIANILLNP-----LLQLADHIVSYAKPGAVVGISG  195 (237)
Q Consensus       147 ~~~~~~~~~~~~~~~fD~I~~n~~~~~-----~~~~l~~~~~~L~~gG~liis~  195 (237)
                               ....++||+|+++.++++     ...+++.+.++|+|||.+++..
T Consensus        97 ---------~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~li~~~  141 (217)
T 3jwh_A           97 ---------DKRFHGYDAATVIEVIEHLDLSRLGAFERVLFEFAQPKIVIVTTP  141 (217)
T ss_dssp             ---------CGGGCSCSEEEEESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEEE
T ss_pred             ---------cccCCCcCEEeeHHHHHcCCHHHHHHHHHHHHHHcCCCEEEEEcc
Confidence                     112468999999998764     3577999999999999887753

>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}

Probab=99.61  E-value=3.9e-15  Score=127.18  Aligned_cols=115  Identities=16%  Similarity=0.160  Sum_probs=80.3

Q ss_pred             CCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCC--CcceEEeccCccccccccccccccccc
Q 026513           70 GGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGP--KKMKLHLVPDRTFTASMNERVDGVVED  147 (237)
Q Consensus        70 ~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~--~~~~v~~~~~d~~~~~~~~~~~~~~~~  147 (237)
                      ++.+|||+|||+|..+..++..+..+|+|+|+|+.+++.|++.+...+...  ....+.+.+.|.......         
T Consensus        48 ~~~~VLDlGCG~G~~l~~~~~~~~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~---------  118 (302)
T 2vdw_A           48 NKRKVLAIDFGNGADLEKYFYGEIALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFV---------  118 (302)
T ss_dssp             SCCEEEETTCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHH---------
T ss_pred             CCCeEEEEecCCcHhHHHHHhcCCCeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhh---------
Confidence            478999999999987666666666789999999999999999887665321  011244555554210000         


Q ss_pred             cccccccCCCCCCceeEEEEeCChHH------HHHHHHHHhHhcCCCeEEEEecc
Q 026513          148 LSSHKIRGISQTEKYDVVIANILLNP------LLQLADHIVSYAKPGAVVGISGI  196 (237)
Q Consensus       148 ~~~~~~~~~~~~~~fD~I~~n~~~~~------~~~~l~~~~~~L~~gG~liis~~  196 (237)
                         ..+....++++||+|+|...+++      ...+++++.++|+|||+++++..
T Consensus       119 ---~~l~~~~~~~~FD~V~~~~~lhy~~~~~~~~~~l~~~~r~LkpGG~~i~~~~  170 (302)
T 2vdw_A          119 ---SSVREVFYFGKFNIIDWQFAIHYSFHPRHYATVMNNLSELTASGGKVLITTM  170 (302)
T ss_dssp             ---HHHHTTCCSSCEEEEEEESCGGGTCSTTTHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             ---hhhhccccCCCeeEEEECchHHHhCCHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence               01112223579999999877643      46889999999999999998754

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*

Probab=99.61  E-value=3.2e-14  Score=114.55  Aligned_cols=99  Identities=15%  Similarity=0.187  Sum_probs=82.2

Q ss_pred             ccCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccc
Q 026513           68 IKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVED  147 (237)
Q Consensus        68 ~~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  147 (237)
                      +.++.+|||+|||+|.++..++..+ .+++|+|+|+.+++.|++    .+..+    +.++++|+.+             
T Consensus        44 ~~~~~~vLdiG~G~G~~~~~l~~~~-~~v~~~D~s~~~~~~a~~----~~~~~----~~~~~~d~~~-------------  101 (218)
T 3ou2_A           44 GNIRGDVLELASGTGYWTRHLSGLA-DRVTALDGSAEMIAEAGR----HGLDN----VEFRQQDLFD-------------  101 (218)
T ss_dssp             TTSCSEEEEESCTTSHHHHHHHHHS-SEEEEEESCHHHHHHHGG----GCCTT----EEEEECCTTS-------------
T ss_pred             CCCCCeEEEECCCCCHHHHHHHhcC-CeEEEEeCCHHHHHHHHh----cCCCC----eEEEeccccc-------------
Confidence            4567899999999999999999884 589999999999999987    34443    8888998763             


Q ss_pred             cccccccCCCCCCceeEEEEeCChHHH-----HHHHHHHhHhcCCCeEEEEecc
Q 026513          148 LSSHKIRGISQTEKYDVVIANILLNPL-----LQLADHIVSYAKPGAVVGISGI  196 (237)
Q Consensus       148 ~~~~~~~~~~~~~~fD~I~~n~~~~~~-----~~~l~~~~~~L~~gG~liis~~  196 (237)
                              +.+.++||+|+++..++++     ..+++.+.++|+|||.+++...
T Consensus       102 --------~~~~~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~  147 (218)
T 3ou2_A          102 --------WTPDRQWDAVFFAHWLAHVPDDRFEAFWESVRSAVAPGGVVEFVDV  147 (218)
T ss_dssp             --------CCCSSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             --------CCCCCceeEEEEechhhcCCHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence                    2346799999999887653     5679999999999999999744

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*

Probab=99.61  E-value=3.4e-15  Score=126.50  Aligned_cols=102  Identities=15%  Similarity=0.166  Sum_probs=85.8

Q ss_pred             ccCCCeEEEEcCcchHHH-HHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccc
Q 026513           68 IKGGELFLDYGTGSGILG-IAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVE  146 (237)
Q Consensus        68 ~~~~~~vLDlG~G~G~~~-~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  146 (237)
                      ++++.+|||+|||+|.++ +.+++....+|+|+|+|+.+++.|++++...++.    ++.++++|..+            
T Consensus       120 l~~g~rVLDIGcG~G~~ta~~lA~~~ga~V~gIDis~~~l~~Ar~~~~~~gl~----~v~~v~gDa~~------------  183 (298)
T 3fpf_A          120 FRRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGLGVD----GVNVITGDETV------------  183 (298)
T ss_dssp             CCTTCEEEEECCCSSCHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHHTCC----SEEEEESCGGG------------
T ss_pred             CCCcCEEEEECCCccHHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHhcCCC----CeEEEECchhh------------
Confidence            578999999999998766 4566656678999999999999999999988874    48999999863            


Q ss_pred             ccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEec
Q 026513          147 DLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISG  195 (237)
Q Consensus       147 ~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~  195 (237)
                               + ++++||+|+++.......++++.+.+.|+|||++++..
T Consensus       184 ---------l-~d~~FDvV~~~a~~~d~~~~l~el~r~LkPGG~Lvv~~  222 (298)
T 3fpf_A          184 ---------I-DGLEFDVLMVAALAEPKRRVFRNIHRYVDTETRIIYRT  222 (298)
T ss_dssp             ---------G-GGCCCSEEEECTTCSCHHHHHHHHHHHCCTTCEEEEEE
T ss_pred             ---------C-CCCCcCEEEECCCccCHHHHHHHHHHHcCCCcEEEEEc
Confidence                     1 15789999998765556689999999999999999963

>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43

Probab=99.61  E-value=1.5e-14  Score=118.55  Aligned_cols=110  Identities=13%  Similarity=0.091  Sum_probs=86.4

Q ss_pred             HHHHHHHHhhccCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccc
Q 026513           58 KLCLLLLRRLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASM  137 (237)
Q Consensus        58 ~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~  137 (237)
                      ..+...+.....++.+|||+|||+|.++..+++.+ .+++|+|+|+.+++.|++++...+. +    +.++++|+.+   
T Consensus        25 ~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~-~~~~~~D~s~~~~~~a~~~~~~~~~-~----~~~~~~d~~~---   95 (246)
T 1y8c_A           25 DFIIEKCVENNLVFDDYLDLACGTGNLTENLCPKF-KNTWAVDLSQEMLSEAENKFRSQGL-K----PRLACQDISN---   95 (246)
T ss_dssp             HHHHHHHHTTTCCTTEEEEETCTTSTTHHHHGGGS-SEEEEECSCHHHHHHHHHHHHHTTC-C----CEEECCCGGG---
T ss_pred             HHHHHHHHHhCCCCCeEEEeCCCCCHHHHHHHHCC-CcEEEEECCHHHHHHHHHHHhhcCC-C----eEEEeccccc---
Confidence            33444444333467899999999999999998874 5799999999999999999887665 2    7788888763   


Q ss_pred             cccccccccccccccccCCCCCCceeEEEEeC-ChHHH------HHHHHHHhHhcCCCeEEEEe
Q 026513          138 NERVDGVVEDLSSHKIRGISQTEKYDVVIANI-LLNPL------LQLADHIVSYAKPGAVVGIS  194 (237)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~-~~~~~------~~~l~~~~~~L~~gG~liis  194 (237)
                                        ....++||+|+++. +++++      ..+++.+.++|+|||.++++
T Consensus        96 ------------------~~~~~~fD~v~~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~  141 (246)
T 1y8c_A           96 ------------------LNINRKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFD  141 (246)
T ss_dssp             ------------------CCCSCCEEEEEECTTGGGGCCSHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred             ------------------CCccCCceEEEEcCccccccCCHHHHHHHHHHHHHhcCCCcEEEEE
Confidence                              11136899999987 66544      56799999999999999984

>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A

Probab=99.61  E-value=3.2e-14  Score=113.58  Aligned_cols=121  Identities=17%  Similarity=0.160  Sum_probs=93.0

Q ss_pred             ccCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccc
Q 026513           68 IKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVED  147 (237)
Q Consensus        68 ~~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  147 (237)
                      ++++ +|||+|||+|.++..+++.+ .+++|+|+|+.+++.|++++...+..     +.++.+|+.+.            
T Consensus        28 ~~~~-~vLdiGcG~G~~~~~l~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~-----~~~~~~d~~~~------------   88 (202)
T 2kw5_A           28 IPQG-KILCLAEGEGRNACFLASLG-YEVTAVDQSSVGLAKAKQLAQEKGVK-----ITTVQSNLADF------------   88 (202)
T ss_dssp             SCSS-EEEECCCSCTHHHHHHHTTT-CEEEEECSSHHHHHHHHHHHHHHTCC-----EEEECCBTTTB------------
T ss_pred             CCCC-CEEEECCCCCHhHHHHHhCC-CeEEEEECCHHHHHHHHHHHHhcCCc-----eEEEEcChhhc------------
Confidence            4667 99999999999999999875 47999999999999999998877652     77888887631            


Q ss_pred             cccccccCCCCCCceeEEEEeCCh---HHHHHHHHHHhHhcCCCeEEEEeccC----------------CCCHHHHHHHH
Q 026513          148 LSSHKIRGISQTEKYDVVIANILL---NPLLQLADHIVSYAKPGAVVGISGIL----------------SEQLPHIINRY  208 (237)
Q Consensus       148 ~~~~~~~~~~~~~~fD~I~~n~~~---~~~~~~l~~~~~~L~~gG~liis~~~----------------~~~~~~~~~~~  208 (237)
                              ..++++||+|+++...   .....++..+.++|+|||.+++..+.                ..+..++...+
T Consensus        89 --------~~~~~~fD~v~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l  160 (202)
T 2kw5_A           89 --------DIVADAWEGIVSIFCHLPSSLRQQLYPKVYQGLKPGGVFILEGFAPEQLQYNTGGPKDLDLLPKLETLQSEL  160 (202)
T ss_dssp             --------SCCTTTCSEEEEECCCCCHHHHHHHHHHHHTTCCSSEEEEEEEECTTTGGGTSCCSSSGGGCCCHHHHHHHC
T ss_pred             --------CCCcCCccEEEEEhhcCCHHHHHHHHHHHHHhcCCCcEEEEEEeccccccCCCCCCCcceeecCHHHHHHHh
Confidence                    1235789999997542   34567899999999999999997532                22355666666


Q ss_pred             hhccccce
Q 026513          209 SEFLEDIL  216 (237)
Q Consensus       209 ~~~~~~~~  216 (237)
                      . +|+.+.
T Consensus       161 ~-Gf~v~~  167 (202)
T 2kw5_A          161 P-SLNWLI  167 (202)
T ss_dssp             S-SSCEEE
T ss_pred             c-CceEEE
Confidence            6 555444

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}

Probab=99.61  E-value=7.8e-15  Score=122.54  Aligned_cols=106  Identities=17%  Similarity=0.269  Sum_probs=88.9

Q ss_pred             ccCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccc
Q 026513           68 IKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVED  147 (237)
Q Consensus        68 ~~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  147 (237)
                      +.++.+|||+|||+|.++..+++....+|+|+|+|+.+++.|++++...++.+   ++.++.+|+.+.            
T Consensus        59 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~---~~~~~~~d~~~~------------  123 (273)
T 3bus_A           59 VRSGDRVLDVGCGIGKPAVRLATARDVRVTGISISRPQVNQANARATAAGLAN---RVTFSYADAMDL------------  123 (273)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHHHSCCEEEEEESCHHHHHHHHHHHHHTTCTT---TEEEEECCTTSC------------
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHhcCCCc---ceEEEECccccC------------
Confidence            35788999999999999999987646789999999999999999999888764   488888887631            


Q ss_pred             cccccccCCCCCCceeEEEEeCChHHH---HHHHHHHhHhcCCCeEEEEecc
Q 026513          148 LSSHKIRGISQTEKYDVVIANILLNPL---LQLADHIVSYAKPGAVVGISGI  196 (237)
Q Consensus       148 ~~~~~~~~~~~~~~fD~I~~n~~~~~~---~~~l~~~~~~L~~gG~liis~~  196 (237)
                              ..++++||+|+++.+++++   ..+++++.++|+|||.++++.+
T Consensus       124 --------~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~  167 (273)
T 3bus_A          124 --------PFEDASFDAVWALESLHHMPDRGRALREMARVLRPGGTVAIADF  167 (273)
T ss_dssp             --------CSCTTCEEEEEEESCTTTSSCHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred             --------CCCCCCccEEEEechhhhCCCHHHHHHHHHHHcCCCeEEEEEEe
Confidence                    1235789999999887654   5789999999999999999765

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}

Probab=99.61  E-value=1.5e-14  Score=117.02  Aligned_cols=98  Identities=12%  Similarity=0.177  Sum_probs=80.5

Q ss_pred             cCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccccc
Q 026513           69 KGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDL  148 (237)
Q Consensus        69 ~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~  148 (237)
                      .++.+|||+|||+|.++..+++.+ .+++|+|+|+.+++.|++++.    .    ++.++.+|+.+              
T Consensus        44 ~~~~~vLDiGcG~G~~~~~l~~~~-~~v~~vD~s~~~~~~a~~~~~----~----~~~~~~~d~~~--------------  100 (220)
T 3hnr_A           44 KSFGNVLEFGVGTGNLTNKLLLAG-RTVYGIEPSREMRMIAKEKLP----K----EFSITEGDFLS--------------  100 (220)
T ss_dssp             TCCSEEEEECCTTSHHHHHHHHTT-CEEEEECSCHHHHHHHHHHSC----T----TCCEESCCSSS--------------
T ss_pred             cCCCeEEEeCCCCCHHHHHHHhCC-CeEEEEeCCHHHHHHHHHhCC----C----ceEEEeCChhh--------------
Confidence            478899999999999999999884 579999999999999998755    2    26678888763              


Q ss_pred             ccccccCCCCCCceeEEEEeCChHHHH-----HHHHHHhHhcCCCeEEEEecc
Q 026513          149 SSHKIRGISQTEKYDVVIANILLNPLL-----QLADHIVSYAKPGAVVGISGI  196 (237)
Q Consensus       149 ~~~~~~~~~~~~~fD~I~~n~~~~~~~-----~~l~~~~~~L~~gG~liis~~  196 (237)
                             +...++||+|+++.+++++.     .++.++.+.|+|||.+++...
T Consensus       101 -------~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~  146 (220)
T 3hnr_A          101 -------FEVPTSIDTIVSTYAFHHLTDDEKNVAIAKYSQLLNKGGKIVFADT  146 (220)
T ss_dssp             -------CCCCSCCSEEEEESCGGGSCHHHHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred             -------cCCCCCeEEEEECcchhcCChHHHHHHHHHHHHhcCCCCEEEEEec
Confidence                   11127999999999876653     388999999999999999853

>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae}

Probab=99.61  E-value=6.4e-15  Score=124.45  Aligned_cols=165  Identities=18%  Similarity=0.126  Sum_probs=99.4

Q ss_pred             cccCCCCchhHHHHHHHHHhhc--cCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeC-CHHHHHHHHHHHH-----HcCC
Q 026513           47 LAFGSGEHATTKLCLLLLRRLI--KGGELFLDYGTGSGILGIAAIKFGAAMSVGADI-DPQAIKSAHQNAA-----LNNI  118 (237)
Q Consensus        47 ~~f~~g~~~~~~~~~~~l~~~~--~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~-s~~~i~~a~~~~~-----~~~~  118 (237)
                      ..+|...++.+..+.+++....  .++.+|||+|||+|.+++.+++.+..+|+++|+ |+.+++.|++|+.     .+++
T Consensus        54 ~~~g~~~~~~~~~l~~~l~~~~~~~~~~~vLDlG~G~G~~~~~~a~~~~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~  133 (281)
T 3bzb_A           54 PLWTSHVWSGARALADTLCWQPELIAGKTVCELGAGAGLVSIVAFLAGADQVVATDYPDPEILNSLESNIREHTANSCSS  133 (281)
T ss_dssp             --------CHHHHHHHHHHHCGGGTTTCEEEETTCTTSHHHHHHHHTTCSEEEEEECSCHHHHHHHHHHHHTTCC-----
T ss_pred             CCCCceeecHHHHHHHHHHhcchhcCCCeEEEecccccHHHHHHHHcCCCEEEEEeCCCHHHHHHHHHHHHHhhhhhccc
Confidence            4445556666777777776543  578899999999999999999887778999999 8999999999994     4443


Q ss_pred             CC-CcceEEeccCccccccccccccccccccccccccCCCCCCceeEEEEeCChH---HHHHHHHHHhHhcC---C--Ce
Q 026513          119 GP-KKMKLHLVPDRTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLN---PLLQLADHIVSYAK---P--GA  189 (237)
Q Consensus       119 ~~-~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~~---~~~~~l~~~~~~L~---~--gG  189 (237)
                      .. ..-++.+...++.+..     .         .+......++||+|++..+++   ....+++.+.++|+   |  ||
T Consensus       134 ~~~~~~~v~~~~~~~~~~~-----~---------~~~~~~~~~~fD~Ii~~dvl~~~~~~~~ll~~l~~~Lk~~~p~~gG  199 (281)
T 3bzb_A          134 ETVKRASPKVVPYRWGDSP-----D---------SLQRCTGLQRFQVVLLADLLSFHQAHDALLRSVKMLLALPANDPTA  199 (281)
T ss_dssp             -----CCCEEEECCTTSCT-----H---------HHHHHHSCSSBSEEEEESCCSCGGGHHHHHHHHHHHBCCTTTCTTC
T ss_pred             ccCCCCCeEEEEecCCCcc-----H---------HHHhhccCCCCCEEEEeCcccChHHHHHHHHHHHHHhcccCCCCCC
Confidence            20 0002555544443210     0         000000246899999844432   25678999999999   9  99


Q ss_pred             EEEEeccC-----CCCHHHHHHHHhh-c-cccceeeecCCEEE
Q 026513          190 VVGISGIL-----SEQLPHIINRYSE-F-LEDILVSEMDDWTC  225 (237)
Q Consensus       190 ~liis~~~-----~~~~~~~~~~~~~-~-~~~~~~~~~~~w~~  225 (237)
                      .+++....     .....++...+.. . |....+.....|..
T Consensus       200 ~l~v~~~~~~~~~~~~~~~~~~~l~~~G~f~v~~~~~~~~~~~  242 (281)
T 3bzb_A          200 VALVTFTHHRPHLAERDLAFFRLVNADGALIAEPWLSPLQMDP  242 (281)
T ss_dssp             EEEEEECC--------CTHHHHHHHHSTTEEEEEEECCC----
T ss_pred             EEEEEEEeeecccchhHHHHHHHHHhcCCEEEEEecccccccc
Confidence            87775322     1224556655554 4 77777666777743

>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}

Probab=99.61  E-value=7.5e-15  Score=123.74  Aligned_cols=100  Identities=15%  Similarity=0.157  Sum_probs=85.0

Q ss_pred             cCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccccc
Q 026513           69 KGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDL  148 (237)
Q Consensus        69 ~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~  148 (237)
                      .++.+|||+|||+|.++..+++.+. +|+|+|+|+.+++.|++++..+++ +    +.++.+|+.+              
T Consensus       119 ~~~~~vLD~GcG~G~~~~~l~~~g~-~v~~vD~s~~~~~~a~~~~~~~~~-~----~~~~~~d~~~--------------  178 (286)
T 3m70_A          119 ISPCKVLDLGCGQGRNSLYLSLLGY-DVTSWDHNENSIAFLNETKEKENL-N----ISTALYDINA--------------  178 (286)
T ss_dssp             SCSCEEEEESCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTC-C----EEEEECCGGG--------------
T ss_pred             cCCCcEEEECCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHHHcCC-c----eEEEEecccc--------------
Confidence            3678999999999999999998855 799999999999999999998876 3    8888998763              


Q ss_pred             ccccccCCCCCCceeEEEEeCChHHH-----HHHHHHHhHhcCCCeEEEEec
Q 026513          149 SSHKIRGISQTEKYDVVIANILLNPL-----LQLADHIVSYAKPGAVVGISG  195 (237)
Q Consensus       149 ~~~~~~~~~~~~~fD~I~~n~~~~~~-----~~~l~~~~~~L~~gG~liis~  195 (237)
                             ....++||+|+++.+++++     ..+++.+.++|+|||.+++.+
T Consensus       179 -------~~~~~~fD~i~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~  223 (286)
T 3m70_A          179 -------ANIQENYDFIVSTVVFMFLNRERVPSIIKNMKEHTNVGGYNLIVA  223 (286)
T ss_dssp             -------CCCCSCEEEEEECSSGGGSCGGGHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             -------ccccCCccEEEEccchhhCCHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence                   1125789999999987644     478999999999999988753

>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}

Probab=99.61  E-value=8.9e-15  Score=120.97  Aligned_cols=98  Identities=18%  Similarity=0.253  Sum_probs=82.7

Q ss_pred             CCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccccc
Q 026513           70 GGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDLS  149 (237)
Q Consensus        70 ~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~  149 (237)
                      ++.+|||+|||+|.++..+++.+..+|+|+|+|+.+++.|++++.   ..    .+.++.+|+.+.              
T Consensus        44 ~~~~vLD~GcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~---~~----~~~~~~~d~~~~--------------  102 (253)
T 3g5l_A           44 NQKTVLDLGCGFGWHCIYAAEHGAKKVLGIDLSERMLTEAKRKTT---SP----VVCYEQKAIEDI--------------  102 (253)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHCC---CT----TEEEEECCGGGC--------------
T ss_pred             CCCEEEEECCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHhhc---cC----CeEEEEcchhhC--------------
Confidence            688999999999999999998877689999999999999998865   12    378888887631              


Q ss_pred             cccccCCCCCCceeEEEEeCChHHH---HHHHHHHhHhcCCCeEEEEe
Q 026513          150 SHKIRGISQTEKYDVVIANILLNPL---LQLADHIVSYAKPGAVVGIS  194 (237)
Q Consensus       150 ~~~~~~~~~~~~fD~I~~n~~~~~~---~~~l~~~~~~L~~gG~liis  194 (237)
                            ..++++||+|+++.+++++   ..+++.+.++|+|||.++++
T Consensus       103 ------~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~  144 (253)
T 3g5l_A          103 ------AIEPDAYNVVLSSLALHYIASFDDICKKVYINLKSSGSFIFS  144 (253)
T ss_dssp             ------CCCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEE
T ss_pred             ------CCCCCCeEEEEEchhhhhhhhHHHHHHHHHHHcCCCcEEEEE
Confidence                  1235799999999988665   57899999999999999996

>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A

Probab=99.60  E-value=7.2e-15  Score=118.97  Aligned_cols=120  Identities=13%  Similarity=0.190  Sum_probs=88.5

Q ss_pred             hhHHHHHHHHHhh--ccCCCeEEEEcCcchHHHHHHHHhC-CCeEEEEeCCHHHHHHHHHHHHHcCCCCC-cceEEeccC
Q 026513           55 ATTKLCLLLLRRL--IKGGELFLDYGTGSGILGIAAIKFG-AAMSVGADIDPQAIKSAHQNAALNNIGPK-KMKLHLVPD  130 (237)
Q Consensus        55 ~~~~~~~~~l~~~--~~~~~~vLDlG~G~G~~~~~la~~~-~~~v~~vD~s~~~i~~a~~~~~~~~~~~~-~~~v~~~~~  130 (237)
                      +......+.+...  ..++.+|||+|||+|.++..++..+ ..+++|+|+|+.+++.|++++..+++... ..++.++++
T Consensus        12 ~~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~   91 (219)
T 3jwg_A           12 NLNQQRLGTVVAVLKSVNAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQS   91 (219)
T ss_dssp             CHHHHHHHHHHHHHHHTTCCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEEC
T ss_pred             cchHHHHHHHHHHHhhcCCCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeC
Confidence            3333344444332  2567899999999999999999764 47899999999999999999877665410 002778888


Q ss_pred             ccccccccccccccccccccccccCCCCCCceeEEEEeCChHHH-----HHHHHHHhHhcCCCeEEEEe
Q 026513          131 RTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLNPL-----LQLADHIVSYAKPGAVVGIS  194 (237)
Q Consensus       131 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~~~~-----~~~l~~~~~~L~~gG~liis  194 (237)
                      |+...                    ....++||+|+++.+++++     ..+++.+.++|+|||.+++.
T Consensus        92 d~~~~--------------------~~~~~~fD~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~~i~~  140 (219)
T 3jwg_A           92 SLVYR--------------------DKRFSGYDAATVIEVIEHLDENRLQAFEKVLFEFTRPQTVIVST  140 (219)
T ss_dssp             CSSSC--------------------CGGGTTCSEEEEESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEE
T ss_pred             ccccc--------------------ccccCCCCEEEEHHHHHhCCHHHHHHHHHHHHHhhCCCEEEEEc
Confidence            87421                    1124689999999887554     46799999999999977764

>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17

Probab=99.60  E-value=4.7e-15  Score=125.04  Aligned_cols=142  Identities=17%  Similarity=0.160  Sum_probs=103.8

Q ss_pred             cCCCeEEEEcCcchHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHHc--CCCCCcceEEeccCccccccccccccccc
Q 026513           69 KGGELFLDYGTGSGILGIAAIKF-GAAMSVGADIDPQAIKSAHQNAALN--NIGPKKMKLHLVPDRTFTASMNERVDGVV  145 (237)
Q Consensus        69 ~~~~~vLDlG~G~G~~~~~la~~-~~~~v~~vD~s~~~i~~a~~~~~~~--~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  145 (237)
                      +.+.+|||+|||+|.++..+++. +..+|+++|+|+.+++.|++++...  ++...  +++++.+|..+..         
T Consensus        74 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~--rv~v~~~D~~~~l---------  142 (275)
T 1iy9_A           74 PNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDP--RVDVQVDDGFMHI---------  142 (275)
T ss_dssp             SSCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTST--TEEEEESCSHHHH---------
T ss_pred             CCCCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhccccCCC--ceEEEECcHHHHH---------
Confidence            45689999999999999999876 6789999999999999999987542  33211  4788899976311         


Q ss_pred             cccccccccCCCCCCceeEEEEeCChHH-------HHHHHHHHhHhcCCCeEEEEeccC----CCCHHHHHHHHhhcccc
Q 026513          146 EDLSSHKIRGISQTEKYDVVIANILLNP-------LLQLADHIVSYAKPGAVVGISGIL----SEQLPHIINRYSEFLED  214 (237)
Q Consensus       146 ~~~~~~~~~~~~~~~~fD~I~~n~~~~~-------~~~~l~~~~~~L~~gG~liis~~~----~~~~~~~~~~~~~~~~~  214 (237)
                              ..  ..++||+|+++++.+.       ..++++.+.+.|+|||++++....    ......+...+++.|..
T Consensus       143 --------~~--~~~~fD~Ii~d~~~~~~~~~~l~~~~~~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~~l~~~F~~  212 (275)
T 1iy9_A          143 --------AK--SENQYDVIMVDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQTDNPWFTPELITNVQRDVKEIFPI  212 (275)
T ss_dssp             --------HT--CCSCEEEEEESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHTTCSE
T ss_pred             --------hh--CCCCeeEEEECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcCCccccHHHHHHHHHHHHHhCCC
Confidence                    11  1468999999886421       257899999999999999997321    12244555666666655


Q ss_pred             ceeee-------cCCEEEEEEEEc
Q 026513          215 ILVSE-------MDDWTCVSGKKK  231 (237)
Q Consensus       215 ~~~~~-------~~~w~~~~~~~~  231 (237)
                      +....       .+.|..++++|+
T Consensus       213 v~~~~~~vp~~~~g~w~~~~ask~  236 (275)
T 1iy9_A          213 TKLYTANIPTYPSGLWTFTIGSKK  236 (275)
T ss_dssp             EEEEEECCTTSGGGCEEEEEEESS
T ss_pred             eEEEEEecCcccCcceEEEEeeCC
Confidence            54432       578999998864

>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}

Probab=99.60  E-value=4.5e-15  Score=130.13  Aligned_cols=152  Identities=9%  Similarity=0.033  Sum_probs=101.8

Q ss_pred             eeEEeCcccccCCCCchhHHHHHHHHHhhccCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCC
Q 026513           39 TNIILNPGLAFGSGEHATTKLCLLLLRRLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNI  118 (237)
Q Consensus        39 ~~~~~~~~~~f~~g~~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~  118 (237)
                      +.+.+.|+.+|+.+......+....+......+.+|||+|||+|.+++.+++. ..+|+|+|+|+.+++.|++|+..+++
T Consensus       182 ~~~~~~~~~F~Q~n~~~~~~l~~~~~~~~~~~~~~vLDl~cG~G~~~l~la~~-~~~V~gvd~~~~ai~~a~~n~~~ng~  260 (369)
T 3bt7_A          182 MIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLALARN-FDRVLATEIAKPSVAAAQYNIAANHI  260 (369)
T ss_dssp             CEEEEETTSCCCSBHHHHHHHHHHHHHHTTTCCSEEEEESCTTSHHHHHHGGG-SSEEEEECCCHHHHHHHHHHHHHTTC
T ss_pred             EEEEECCCCeecCCHHHHHHHHHHHHHHhhcCCCEEEEccCCCCHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHHcCC
Confidence            67888999999887665555544444433234678999999999999998874 67899999999999999999999998


Q ss_pred             CCCcceEEeccCcccccccccccccccccccc-ccccCC----CCCCceeEEEEeCChHHHHHHHHHHhHhc-CCCeEEE
Q 026513          119 GPKKMKLHLVPDRTFTASMNERVDGVVEDLSS-HKIRGI----SQTEKYDVVIANILLNPLLQLADHIVSYA-KPGAVVG  192 (237)
Q Consensus       119 ~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~-~~~~~~----~~~~~fD~I~~n~~~~~~~~~l~~~~~~L-~~gG~li  192 (237)
                      .+    +.++.+|+.+..         ..+.. ...+.+    ..+.+||+|++|||...+.   ..+.+.| ++|..+|
T Consensus       261 ~~----v~~~~~d~~~~~---------~~~~~~~~~~~l~~~~~~~~~fD~Vv~dPPr~g~~---~~~~~~l~~~g~ivy  324 (369)
T 3bt7_A          261 DN----VQIIRMAAEEFT---------QAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGLD---SETEKMVQAYPRILY  324 (369)
T ss_dssp             CS----EEEECCCSHHHH---------HHHSSCCCCTTGGGSCGGGCCEEEEEECCCTTCCC---HHHHHHHTTSSEEEE
T ss_pred             Cc----eEEEECCHHHHH---------HHHhhccccccccccccccCCCCEEEECcCccccH---HHHHHHHhCCCEEEE
Confidence            65    889999986421         00000 000000    0013799999999975332   2233334 4455556


Q ss_pred             EeccCCCCHHHHHHH
Q 026513          193 ISGILSEQLPHIINR  207 (237)
Q Consensus       193 is~~~~~~~~~~~~~  207 (237)
                      +||......+++...
T Consensus       325 vsc~p~t~ard~~~l  339 (369)
T 3bt7_A          325 ISCNPETLCKNLETL  339 (369)
T ss_dssp             EESCHHHHHHHHHHH
T ss_pred             EECCHHHHHHHHHHH
Confidence            677665555555444

>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*

Probab=99.60  E-value=6e-15  Score=125.63  Aligned_cols=142  Identities=14%  Similarity=0.070  Sum_probs=100.6

Q ss_pred             cCCCeEEEEcCcchHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHH--cCCCCCcceEEeccCccccccccccccccc
Q 026513           69 KGGELFLDYGTGSGILGIAAIKF-GAAMSVGADIDPQAIKSAHQNAAL--NNIGPKKMKLHLVPDRTFTASMNERVDGVV  145 (237)
Q Consensus        69 ~~~~~vLDlG~G~G~~~~~la~~-~~~~v~~vD~s~~~i~~a~~~~~~--~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  145 (237)
                      +.+.+|||+|||+|.++..+++. +..+|+++|+|+.+++.|++++..  .++...  ++.++.+|+.+..         
T Consensus        89 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~--~v~~~~~D~~~~l---------  157 (296)
T 1inl_A           89 PNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDP--RAEIVIANGAEYV---------  157 (296)
T ss_dssp             SSCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCT--TEEEEESCHHHHG---------
T ss_pred             CCCCEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccCCC--ceEEEECcHHHHH---------
Confidence            45689999999999999999876 678999999999999999998754  222111  4788899876311         


Q ss_pred             cccccccccCCCCCCceeEEEEeCChH--------HHHHHHHHHhHhcCCCeEEEEeccC----CCCHHHHHHHHhhccc
Q 026513          146 EDLSSHKIRGISQTEKYDVVIANILLN--------PLLQLADHIVSYAKPGAVVGISGIL----SEQLPHIINRYSEFLE  213 (237)
Q Consensus       146 ~~~~~~~~~~~~~~~~fD~I~~n~~~~--------~~~~~l~~~~~~L~~gG~liis~~~----~~~~~~~~~~~~~~~~  213 (237)
                              ..  ..++||+|++|++..        ...++++.+.+.|+|||++++....    ......+...+.+.|.
T Consensus       158 --------~~--~~~~fD~Ii~d~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~F~  227 (296)
T 1inl_A          158 --------RK--FKNEFDVIIIDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAETEDPFYDIGWFKLAYRRISKVFP  227 (296)
T ss_dssp             --------GG--CSSCEEEEEEEC----------CCSHHHHHHHHHHEEEEEEEEEECCCTTTTHHHHHHHHHHHHHHCS
T ss_pred             --------hh--CCCCceEEEEcCCCcccCchhhhhHHHHHHHHHHhcCCCcEEEEEccCcccCHHHHHHHHHHHHHHCC
Confidence                    01  146899999988643        1157899999999999999996321    1223455555655555


Q ss_pred             cceeee-------cCCEEEEEEEEc
Q 026513          214 DILVSE-------MDDWTCVSGKKK  231 (237)
Q Consensus       214 ~~~~~~-------~~~w~~~~~~~~  231 (237)
                      .+....       .+.|..++++|+
T Consensus       228 ~v~~~~~~vp~~p~g~~~f~~as~~  252 (296)
T 1inl_A          228 ITRVYLGFMTTYPSGMWSYTFASKG  252 (296)
T ss_dssp             EEEEEEEECTTSTTSEEEEEEEESS
T ss_pred             ceEEEEeecCccCCCceEEEEecCC
Confidence            444322       467998888864

>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}

Probab=99.60  E-value=9.6e-15  Score=119.59  Aligned_cols=108  Identities=15%  Similarity=0.229  Sum_probs=89.5

Q ss_pred             cCCCeEEEEcCcchHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccc
Q 026513           69 KGGELFLDYGTGSGILGIAAIKF-GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVED  147 (237)
Q Consensus        69 ~~~~~vLDlG~G~G~~~~~la~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  147 (237)
                      .++.+|||+|||+|..+..+++. +..+|+++|+++.+++.|++++...++.+   ++.++.+|..+..           
T Consensus        53 ~~~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~---~v~~~~~d~~~~~-----------  118 (233)
T 2gpy_A           53 AAPARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKALGLES---RIELLFGDALQLG-----------  118 (233)
T ss_dssp             HCCSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHTTCTT---TEEEECSCGGGSH-----------
T ss_pred             cCCCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCC---cEEEEECCHHHHH-----------
Confidence            56789999999999999999875 46789999999999999999999888754   3888899876311           


Q ss_pred             cccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEecc
Q 026513          148 LSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGI  196 (237)
Q Consensus       148 ~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~~  196 (237)
                            ......++||+|+++.+.+....+++.+.++|+|||.++++.+
T Consensus       119 ------~~~~~~~~fD~I~~~~~~~~~~~~l~~~~~~L~pgG~lv~~~~  161 (233)
T 2gpy_A          119 ------EKLELYPLFDVLFIDAAKGQYRRFFDMYSPMVRPGGLILSDNV  161 (233)
T ss_dssp             ------HHHTTSCCEEEEEEEGGGSCHHHHHHHHGGGEEEEEEEEEETT
T ss_pred             ------HhcccCCCccEEEECCCHHHHHHHHHHHHHHcCCCeEEEEEcC
Confidence                  0111146899999999887778899999999999999999854

>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*

Probab=99.60  E-value=5.7e-15  Score=122.78  Aligned_cols=141  Identities=17%  Similarity=0.153  Sum_probs=100.2

Q ss_pred             cCCCeEEEEcCcchHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccc
Q 026513           69 KGGELFLDYGTGSGILGIAAIKF-GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVED  147 (237)
Q Consensus        69 ~~~~~vLDlG~G~G~~~~~la~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  147 (237)
                      .++.+|||+|||+|..++.++.. +..+|+++|+|+.+++.|++++..+++.+    +.++++|+.+...          
T Consensus        79 ~~~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~l~~----v~~~~~d~~~~~~----------  144 (249)
T 3g89_A           79 QGPLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVERAIEVLGLKG----ARALWGRAEVLAR----------  144 (249)
T ss_dssp             CSSCEEEEETCTTTTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSS----EEEEECCHHHHTT----------
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCc----eEEEECcHHHhhc----------
Confidence            35789999999999999999865 67889999999999999999999999875    8899998763210          


Q ss_pred             cccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEe-cc-CCCCHHHHHHHHhhc-cccceee-----e
Q 026513          148 LSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGIS-GI-LSEQLPHIINRYSEF-LEDILVS-----E  219 (237)
Q Consensus       148 ~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis-~~-~~~~~~~~~~~~~~~-~~~~~~~-----~  219 (237)
                             .....++||+|+++... .+..++..+.++|+|||++++. +. ..++..++...+... +...++.     .
T Consensus       145 -------~~~~~~~fD~I~s~a~~-~~~~ll~~~~~~LkpgG~l~~~~g~~~~~e~~~~~~~l~~~G~~~~~~~~~~~p~  216 (249)
T 3g89_A          145 -------EAGHREAYARAVARAVA-PLCVLSELLLPFLEVGGAAVAMKGPRVEEELAPLPPALERLGGRLGEVLALQLPL  216 (249)
T ss_dssp             -------STTTTTCEEEEEEESSC-CHHHHHHHHGGGEEEEEEEEEEECSCCHHHHTTHHHHHHHHTEEEEEEEEEECTT
T ss_pred             -------ccccCCCceEEEECCcC-CHHHHHHHHHHHcCCCeEEEEEeCCCcHHHHHHHHHHHHHcCCeEEEEEEeeCCC
Confidence                   00124689999998754 3567889999999999998873 32 223333344433332 3333322     1


Q ss_pred             -cCCEEEEEEEEc
Q 026513          220 -MDDWTCVSGKKK  231 (237)
Q Consensus       220 -~~~w~~~~~~~~  231 (237)
                       .+....++++|.
T Consensus       217 ~~~~R~l~~~~k~  229 (249)
T 3g89_A          217 SGEARHLVVLEKT  229 (249)
T ss_dssp             TCCEEEEEEEEEC
T ss_pred             CCCcEEEEEEEeC
Confidence             234556666653

>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=99.60  E-value=2.7e-15  Score=123.22  Aligned_cols=105  Identities=12%  Similarity=0.080  Sum_probs=82.3

Q ss_pred             ccCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccc
Q 026513           68 IKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVED  147 (237)
Q Consensus        68 ~~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  147 (237)
                      ..++.+|||+|||+|.++..+++.+..+|+|+|+|+.+++.|++++...+ .    ++.++++|+.+.            
T Consensus        58 ~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~-~----~v~~~~~d~~~~------------  120 (236)
T 1zx0_A           58 SSKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQT-H----KVIPLKGLWEDV------------  120 (236)
T ss_dssp             TTTCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHHHGGGCS-S----EEEEEESCHHHH------------
T ss_pred             CCCCCeEEEEeccCCHHHHHHHhcCCCeEEEEcCCHHHHHHHHHHHHhcC-C----CeEEEecCHHHh------------
Confidence            46788999999999999999987766689999999999999999887655 2    488889987631            


Q ss_pred             cccccccCCCCCCceeEEEE-eCC-------hHHHHHHHHHHhHhcCCCeEEEEec
Q 026513          148 LSSHKIRGISQTEKYDVVIA-NIL-------LNPLLQLADHIVSYAKPGAVVGISG  195 (237)
Q Consensus       148 ~~~~~~~~~~~~~~fD~I~~-n~~-------~~~~~~~l~~~~~~L~~gG~liis~  195 (237)
                            ....++++||+|++ ...       ......++.++.++|||||++++..
T Consensus       121 ------~~~~~~~~fD~V~~d~~~~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~  170 (236)
T 1zx0_A          121 ------APTLPDGHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCN  170 (236)
T ss_dssp             ------GGGSCTTCEEEEEECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECC
T ss_pred             ------hcccCCCceEEEEECCcccchhhhhhhhHHHHHHHHHHhcCCCeEEEEEe
Confidence                  01123579999999 222       1223366899999999999999854

>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A*

Probab=99.60  E-value=8.5e-15  Score=121.49  Aligned_cols=149  Identities=13%  Similarity=0.099  Sum_probs=101.4

Q ss_pred             cCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCc-------------------------c
Q 026513           69 KGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKK-------------------------M  123 (237)
Q Consensus        69 ~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~-------------------------~  123 (237)
                      .++.+|||+|||+|.++..++..+..+|+|+|+|+.+++.|++++...+.....                         -
T Consensus        55 ~~~~~vLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  134 (265)
T 2i62_A           55 VKGELLIDIGSGPTIYQLLSACESFTEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKLRR  134 (265)
T ss_dssp             CCEEEEEEESCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHHHH
T ss_pred             cCCCEEEEECCCccHHHHHHhhcccCeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHHhhh
Confidence            456799999999999999888776668999999999999999887654310000                         0


Q ss_pred             eE-EeccCccccccccccccccccccccccccCCCCCCceeEEEEeCChH-------HHHHHHHHHhHhcCCCeEEEEec
Q 026513          124 KL-HLVPDRTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLN-------PLLQLADHIVSYAKPGAVVGISG  195 (237)
Q Consensus       124 ~v-~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~~-------~~~~~l~~~~~~L~~gG~liis~  195 (237)
                      ++ .++.+|+.+....                .....++||+|+++..++       ....++.++.++|+|||++++..
T Consensus       135 ~v~~~~~~d~~~~~~~----------------~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~  198 (265)
T 2i62_A          135 AIKQVLKCDVTQSQPL----------------GGVSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLKPGGFLVMVD  198 (265)
T ss_dssp             HEEEEEECCTTSSSTT----------------TTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred             hheeEEEeeeccCCCC----------------CccccCCccEEEEhhhhhhhcCChHHHHHHHHHHHhhCCCCcEEEEEe
Confidence            15 6777777531100                001126899999999887       34578999999999999999975


Q ss_pred             cCC---------------CCHHHHHHHHhhc-cccceeeecC-----------CEEEEEEEEccc
Q 026513          196 ILS---------------EQLPHIINRYSEF-LEDILVSEMD-----------DWTCVSGKKKRV  233 (237)
Q Consensus       196 ~~~---------------~~~~~~~~~~~~~-~~~~~~~~~~-----------~w~~~~~~~~~~  233 (237)
                      ...               -...++...+... |+.++.....           ....++++|.+.
T Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~~~~~~~~~~~~~~~~~~a~K~~~  263 (265)
T 2i62_A          199 ALKSSYYMIGEQKFSSLPLGWETVRDAVEEAGYTIEQFEVISQNYSSTTSNNEGLFSLVGRKPGR  263 (265)
T ss_dssp             ESSCCEEEETTEEEECCCCCHHHHHHHHHHTTCEEEEEEEECCCCCTTTBCCCCEEEEEEECCC-
T ss_pred             cCCCceEEcCCccccccccCHHHHHHHHHHCCCEEEEEEEecccCCccccccceEEEEEeccccc
Confidence            321               1345777777653 7666554322           344566666543

>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=99.60  E-value=2.5e-14  Score=114.33  Aligned_cols=121  Identities=13%  Similarity=0.095  Sum_probs=93.9

Q ss_pred             CCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccccccc
Q 026513           71 GELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDLSS  150 (237)
Q Consensus        71 ~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~  150 (237)
                      +.+|||+|||+|.++..++..+. +++|+|+|+.+++.|+++.     .    ++.++++|+.+..              
T Consensus        42 ~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~-----~----~~~~~~~d~~~~~--------------   97 (203)
T 3h2b_A           42 DGVILDVGSGTGRWTGHLASLGH-QIEGLEPATRLVELARQTH-----P----SVTFHHGTITDLS--------------   97 (203)
T ss_dssp             CSCEEEETCTTCHHHHHHHHTTC-CEEEECCCHHHHHHHHHHC-----T----TSEEECCCGGGGG--------------
T ss_pred             CCeEEEecCCCCHHHHHHHhcCC-eEEEEeCCHHHHHHHHHhC-----C----CCeEEeCcccccc--------------
Confidence            78999999999999999998854 7999999999999999872     2    2678888876311              


Q ss_pred             ccccCCCCCCceeEEEEeCChHHH-----HHHHHHHhHhcCCCeEEEEeccCCC---------------CHHHHHHHHhh
Q 026513          151 HKIRGISQTEKYDVVIANILLNPL-----LQLADHIVSYAKPGAVVGISGILSE---------------QLPHIINRYSE  210 (237)
Q Consensus       151 ~~~~~~~~~~~fD~I~~n~~~~~~-----~~~l~~~~~~L~~gG~liis~~~~~---------------~~~~~~~~~~~  210 (237)
                            .++++||+|+++.+++++     ..+++.+.++|+|||.++++.....               ...++...+..
T Consensus        98 ------~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  171 (203)
T 3h2b_A           98 ------DSPKRWAGLLAWYSLIHMGPGELPDALVALRMAVEDGGGLLMSFFSGPSLEPMYHPVATAYRWPLPELAQALET  171 (203)
T ss_dssp             ------GSCCCEEEEEEESSSTTCCTTTHHHHHHHHHHTEEEEEEEEEEEECCSSCEEECCSSSCEEECCHHHHHHHHHH
T ss_pred             ------cCCCCeEEEEehhhHhcCCHHHHHHHHHHHHHHcCCCcEEEEEEccCCchhhhhchhhhhccCCHHHHHHHHHH
Confidence                  235799999998876554     5789999999999999999754322               36677777765


Q ss_pred             c-cccceeeecC
Q 026513          211 F-LEDILVSEMD  221 (237)
Q Consensus       211 ~-~~~~~~~~~~  221 (237)
                      . |+.++.....
T Consensus       172 ~Gf~~~~~~~~~  183 (203)
T 3h2b_A          172 AGFQVTSSHWDP  183 (203)
T ss_dssp             TTEEEEEEEECT
T ss_pred             CCCcEEEEEecC
Confidence            4 7666655433

>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3

Probab=99.60  E-value=3.7e-14  Score=114.88  Aligned_cols=130  Identities=12%  Similarity=0.065  Sum_probs=88.6

Q ss_pred             ccCCCeEEEEcCcchHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccc
Q 026513           68 IKGGELFLDYGTGSGILGIAAIKF-GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVE  146 (237)
Q Consensus        68 ~~~~~~vLDlG~G~G~~~~~la~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  146 (237)
                      +++|.+|||+|||+|.++..++.. +..+|+|+|+|+.+++.+.+.++..  .+    +.++.+|.....          
T Consensus        55 ~~~g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~~~~~~a~~~--~~----v~~~~~d~~~~~----------  118 (210)
T 1nt2_A           55 LRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRER--NN----IIPLLFDASKPW----------  118 (210)
T ss_dssp             CCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHC--SS----EEEECSCTTCGG----------
T ss_pred             CCCCCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhcC--CC----eEEEEcCCCCch----------
Confidence            467889999999999999998875 4568999999999988777666543  22    677778775310          


Q ss_pred             ccccccccCCCCCCceeEEEEeCChHHH-HHHHHHHhHhcCCCeEEEEec----c-CCCCHHHHH----HHHhhccccce
Q 026513          147 DLSSHKIRGISQTEKYDVVIANILLNPL-LQLADHIVSYAKPGAVVGISG----I-LSEQLPHII----NRYSEFLEDIL  216 (237)
Q Consensus       147 ~~~~~~~~~~~~~~~fD~I~~n~~~~~~-~~~l~~~~~~L~~gG~liis~----~-~~~~~~~~~----~~~~~~~~~~~  216 (237)
                             ......++||+|+++...+.. ..++.++.++|||||.++++.    . ......++.    ..+.+.|+.++
T Consensus       119 -------~~~~~~~~fD~V~~~~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~~  191 (210)
T 1nt2_A          119 -------KYSGIVEKVDLIYQDIAQKNQIEILKANAEFFLKEKGEVVIMVKARSIDSTAEPEEVFKSVLKEMEGDFKIVK  191 (210)
T ss_dssp             -------GTTTTCCCEEEEEECCCSTTHHHHHHHHHHHHEEEEEEEEEEEEHHHHCTTSCHHHHHHHHHHHHHTTSEEEE
T ss_pred             -------hhcccccceeEEEEeccChhHHHHHHHHHHHHhCCCCEEEEEEecCCccccCCHHHHHHHHHHHHHhhcEEee
Confidence                   001113689999998654432 345899999999999999972    1 233344443    22333366666


Q ss_pred             eeec
Q 026513          217 VSEM  220 (237)
Q Consensus       217 ~~~~  220 (237)
                      ..+.
T Consensus       192 ~~~~  195 (210)
T 1nt2_A          192 HGSL  195 (210)
T ss_dssp             EEEC
T ss_pred             eecC
Confidence            5544

>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*

Probab=99.60  E-value=1.9e-14  Score=121.20  Aligned_cols=103  Identities=16%  Similarity=0.129  Sum_probs=86.4

Q ss_pred             ccCCCeEEEEcCcchHHHHHHH-HhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccc
Q 026513           68 IKGGELFLDYGTGSGILGIAAI-KFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVE  146 (237)
Q Consensus        68 ~~~~~~vLDlG~G~G~~~~~la-~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  146 (237)
                      +.++.+|||+|||+|.++..++ ..+. +|+|+|+|+.+++.|++++...++..   ++.++.+|+.+            
T Consensus        62 ~~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~gvd~s~~~~~~a~~~~~~~~~~~---~~~~~~~d~~~------------  125 (287)
T 1kpg_A           62 LQPGMTLLDVGCGWGATMMRAVEKYDV-NVVGLTLSKNQANHVQQLVANSENLR---SKRVLLAGWEQ------------  125 (287)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHTCCCCS---CEEEEESCGGG------------
T ss_pred             CCCcCEEEEECCcccHHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCCC---CeEEEECChhh------------
Confidence            4578899999999999999998 4554 89999999999999999998877654   47888888752            


Q ss_pred             ccccccccCCCCCCceeEEEEeCChHHH-----HHHHHHHhHhcCCCeEEEEeccC
Q 026513          147 DLSSHKIRGISQTEKYDVVIANILLNPL-----LQLADHIVSYAKPGAVVGISGIL  197 (237)
Q Consensus       147 ~~~~~~~~~~~~~~~fD~I~~n~~~~~~-----~~~l~~~~~~L~~gG~liis~~~  197 (237)
                               +  .++||+|++..+++++     ..+++++.++|+|||.+++..+.
T Consensus       126 ---------~--~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  170 (287)
T 1kpg_A          126 ---------F--DEPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTIT  170 (287)
T ss_dssp             ---------C--CCCCSEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEEEE
T ss_pred             ---------C--CCCeeEEEEeCchhhcChHHHHHHHHHHHHhcCCCCEEEEEEec
Confidence                     2  2689999999887665     57899999999999999997654

>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13

Probab=99.60  E-value=5.7e-15  Score=124.22  Aligned_cols=123  Identities=22%  Similarity=0.236  Sum_probs=96.8

Q ss_pred             ccCCCeEEEEcCcchHHHHHHHHh--CCCeEEEEeCCHHHHHHHHHHHHHc-CCCCCcceEEeccCcccccccccccccc
Q 026513           68 IKGGELFLDYGTGSGILGIAAIKF--GAAMSVGADIDPQAIKSAHQNAALN-NIGPKKMKLHLVPDRTFTASMNERVDGV  144 (237)
Q Consensus        68 ~~~~~~vLDlG~G~G~~~~~la~~--~~~~v~~vD~s~~~i~~a~~~~~~~-~~~~~~~~v~~~~~d~~~~~~~~~~~~~  144 (237)
                      +.++.+|||+|||+|.++..+++.  +..+|+++|+++.+++.|++++..+ +..+    +.++.+|+.+          
T Consensus       108 ~~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g~~~----v~~~~~d~~~----------  173 (275)
T 1yb2_A          108 LRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGN----VRTSRSDIAD----------  173 (275)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTT----EEEECSCTTT----------
T ss_pred             CCCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCCCCc----EEEEECchhc----------
Confidence            467889999999999999999875  4678999999999999999999887 7554    8888998763          


Q ss_pred             ccccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEeccCCCCHHHHHHHHhhc-ccccee
Q 026513          145 VEDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILSEQLPHIINRYSEF-LEDILV  217 (237)
Q Consensus       145 ~~~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~~~~~~~~~~~~~~~~~-~~~~~~  217 (237)
                                 ..++++||+|+++++-.  ..+++.+.+.|+|||.+++++...+...++...+... |..++.
T Consensus       174 -----------~~~~~~fD~Vi~~~~~~--~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~l~~~Gf~~~~~  234 (275)
T 1yb2_A          174 -----------FISDQMYDAVIADIPDP--WNHVQKIASMMKPGSVATFYLPNFDQSEKTVLSLSASGMHHLET  234 (275)
T ss_dssp             -----------CCCSCCEEEEEECCSCG--GGSHHHHHHTEEEEEEEEEEESSHHHHHHHHHHSGGGTEEEEEE
T ss_pred             -----------cCcCCCccEEEEcCcCH--HHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHCCCeEEEE
Confidence                       22346899999987633  4678999999999999999876555556666666543 544433

>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}

Probab=99.60  E-value=7.3e-15  Score=114.20  Aligned_cols=129  Identities=15%  Similarity=0.143  Sum_probs=98.8

Q ss_pred             ccCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccc
Q 026513           68 IKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVED  147 (237)
Q Consensus        68 ~~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  147 (237)
                      ..++.+|||+|||+|.++..+++.+. +++|+|+++.+++.++++     ..    ++.+..+| .              
T Consensus        15 ~~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~-----~~----~v~~~~~d-~--------------   69 (170)
T 3i9f_A           15 EGKKGVIVDYGCGNGFYCKYLLEFAT-KLYCIDINVIALKEVKEK-----FD----SVITLSDP-K--------------   69 (170)
T ss_dssp             SSCCEEEEEETCTTCTTHHHHHTTEE-EEEEECSCHHHHHHHHHH-----CT----TSEEESSG-G--------------
T ss_pred             cCCCCeEEEECCCCCHHHHHHHhhcC-eEEEEeCCHHHHHHHHHh-----CC----CcEEEeCC-C--------------
Confidence            46788999999999999999998764 899999999999999988     22    26677777 2              


Q ss_pred             cccccccCCCCCCceeEEEEeCChHHH---HHHHHHHhHhcCCCeEEEEeccCCC------------CHHHHHHHHhhcc
Q 026513          148 LSSHKIRGISQTEKYDVVIANILLNPL---LQLADHIVSYAKPGAVVGISGILSE------------QLPHIINRYSEFL  212 (237)
Q Consensus       148 ~~~~~~~~~~~~~~fD~I~~n~~~~~~---~~~l~~~~~~L~~gG~liis~~~~~------------~~~~~~~~~~~~~  212 (237)
                             .. ++++||+|+++.++++.   ..+++++.+.|+|||.+++..+...            ...++...+. +|
T Consensus        70 -------~~-~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-Gf  140 (170)
T 3i9f_A           70 -------EI-PDNSVDFILFANSFHDMDDKQHVISEVKRILKDDGRVIIIDWRKENTGIGPPLSIRMDEKDYMGWFS-NF  140 (170)
T ss_dssp             -------GS-CTTCEEEEEEESCSTTCSCHHHHHHHHHHHEEEEEEEEEEEECSSCCSSSSCGGGCCCHHHHHHHTT-TE
T ss_pred             -------CC-CCCceEEEEEccchhcccCHHHHHHHHHHhcCCCCEEEEEEcCccccccCchHhhhcCHHHHHHHHh-Cc
Confidence                   11 25789999999987654   5789999999999999999755322            3567777777 88


Q ss_pred             ccceeeecCCE-EEEEEEE
Q 026513          213 EDILVSEMDDW-TCVSGKK  230 (237)
Q Consensus       213 ~~~~~~~~~~w-~~~~~~~  230 (237)
                      +.++......+ ..+++++
T Consensus       141 ~~~~~~~~~~~~~~l~~~~  159 (170)
T 3i9f_A          141 VVEKRFNPTPYHFGLVLKR  159 (170)
T ss_dssp             EEEEEECSSTTEEEEEEEE
T ss_pred             EEEEccCCCCceEEEEEec
Confidence            88877766643 3344443

>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18

Probab=99.60  E-value=8e-15  Score=124.14  Aligned_cols=105  Identities=14%  Similarity=0.120  Sum_probs=87.6

Q ss_pred             cCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccccc
Q 026513           69 KGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDL  148 (237)
Q Consensus        69 ~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~  148 (237)
                      .++.+|||+|||+|.++..+++....+|+|+|+|+.+++.|++++...++..   ++.++.+|+.+.             
T Consensus        81 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~---~~~~~~~d~~~~-------------  144 (297)
T 2o57_A           81 QRQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAGLAD---NITVKYGSFLEI-------------  144 (297)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHHTCTT---TEEEEECCTTSC-------------
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHhcCCCc---ceEEEEcCcccC-------------
Confidence            5788999999999999999987523479999999999999999998888754   488888987631             


Q ss_pred             ccccccCCCCCCceeEEEEeCChHHH---HHHHHHHhHhcCCCeEEEEecc
Q 026513          149 SSHKIRGISQTEKYDVVIANILLNPL---LQLADHIVSYAKPGAVVGISGI  196 (237)
Q Consensus       149 ~~~~~~~~~~~~~fD~I~~n~~~~~~---~~~l~~~~~~L~~gG~liis~~  196 (237)
                             ..++++||+|++..+++++   ..+++++.++|+|||.+++...
T Consensus       145 -------~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~  188 (297)
T 2o57_A          145 -------PCEDNSYDFIWSQDAFLHSPDKLKVFQECARVLKPRGVMAITDP  188 (297)
T ss_dssp             -------SSCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             -------CCCCCCEeEEEecchhhhcCCHHHHHHHHHHHcCCCeEEEEEEe
Confidence                   1235789999999887664   5789999999999999999754

>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ...

Probab=99.60  E-value=2.5e-14  Score=120.90  Aligned_cols=133  Identities=13%  Similarity=0.116  Sum_probs=88.2

Q ss_pred             CCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCC--------------------------cc
Q 026513           70 GGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPK--------------------------KM  123 (237)
Q Consensus        70 ~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~--------------------------~~  123 (237)
                      ++.+|||+|||+|.+...++..+..+|+|+|+|+.+++.|++++...+....                          ..
T Consensus        71 ~~~~vLDiGcG~G~~~~l~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  150 (289)
T 2g72_A           71 SGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRAR  150 (289)
T ss_dssp             CCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHHH
T ss_pred             CCCeEEEECCCcChHHHHhhccCCCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcccchhhhHHHHHhh
Confidence            6789999999999965545554566899999999999999987643211000                          00


Q ss_pred             eEEeccCccccc-cccccccccccccccccccCCCCCCceeEEEEeCChHH----H---HHHHHHHhHhcCCCeEEEEec
Q 026513          124 KLHLVPDRTFTA-SMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLNP----L---LQLADHIVSYAKPGAVVGISG  195 (237)
Q Consensus       124 ~v~~~~~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~~~----~---~~~l~~~~~~L~~gG~liis~  195 (237)
                      .+.++.+|+.+. +..               ....++++||+|+++..+++    .   ..+++++.++|||||+|++.+
T Consensus       151 ~~~~~~~D~~~~~~~~---------------~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~r~LkpGG~l~~~~  215 (289)
T 2g72_A          151 VKRVLPIDVHQPQPLG---------------AGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIG  215 (289)
T ss_dssp             EEEEECCCTTSSSTTC---------------SSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred             hceEEecccCCCCCcc---------------ccccCCCCCCEEEehhhhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence            134455566431 000               00122467999999999877    3   467999999999999999963


Q ss_pred             cC---------------CCCHHHHHHHHhhc-ccccee
Q 026513          196 IL---------------SEQLPHIINRYSEF-LEDILV  217 (237)
Q Consensus       196 ~~---------------~~~~~~~~~~~~~~-~~~~~~  217 (237)
                      ..               .-...++...+.+. |+.+..
T Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~~~~~  253 (289)
T 2g72_A          216 ALEESWYLAGEARLTVVPVSEEEVREALVRSGYKVRDL  253 (289)
T ss_dssp             EESCCEEEETTEEEECCCCCHHHHHHHHHHTTEEEEEE
T ss_pred             ecCcceEEcCCeeeeeccCCHHHHHHHHHHcCCeEEEe
Confidence            22               22456777777653 655543

>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans}

Probab=99.60  E-value=1.3e-15  Score=127.26  Aligned_cols=108  Identities=19%  Similarity=0.166  Sum_probs=86.1

Q ss_pred             HHHHHHHHhhccCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccc
Q 026513           58 KLCLLLLRRLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASM  137 (237)
Q Consensus        58 ~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~  137 (237)
                      ..+.+.+......+.+|||+|||+|.++..++..+ .+|+|+|+|+.|++.|++.      .    ++.++++|+.+.  
T Consensus        27 ~~l~~~l~~~~~~~~~vLDvGcGtG~~~~~l~~~~-~~v~gvD~s~~ml~~a~~~------~----~v~~~~~~~e~~--   93 (257)
T 4hg2_A           27 RALFRWLGEVAPARGDALDCGCGSGQASLGLAEFF-ERVHAVDPGEAQIRQALRH------P----RVTYAVAPAEDT--   93 (257)
T ss_dssp             HHHHHHHHHHSSCSSEEEEESCTTTTTHHHHHTTC-SEEEEEESCHHHHHTCCCC------T----TEEEEECCTTCC--
T ss_pred             HHHHHHHHHhcCCCCCEEEEcCCCCHHHHHHHHhC-CEEEEEeCcHHhhhhhhhc------C----Cceeehhhhhhh--
Confidence            34556666666677899999999999999999885 6799999999999877632      2    377888887532  


Q ss_pred             cccccccccccccccccCCCCCCceeEEEEeCChHHH--HHHHHHHhHhcCCCeEEEEecc
Q 026513          138 NERVDGVVEDLSSHKIRGISQTEKYDVVIANILLNPL--LQLADHIVSYAKPGAVVGISGI  196 (237)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~~~~--~~~l~~~~~~L~~gG~liis~~  196 (237)
                                        ..++++||+|++...+|++  .++++++.++|||||.|++.++
T Consensus        94 ------------------~~~~~sfD~v~~~~~~h~~~~~~~~~e~~rvLkpgG~l~~~~~  136 (257)
T 4hg2_A           94 ------------------GLPPASVDVAIAAQAMHWFDLDRFWAELRRVARPGAVFAAVTY  136 (257)
T ss_dssp             ------------------CCCSSCEEEEEECSCCTTCCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             ------------------cccCCcccEEEEeeehhHhhHHHHHHHHHHHcCCCCEEEEEEC
Confidence                              2246899999998887654  4679999999999999998765

>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*

Probab=99.60  E-value=8.9e-15  Score=125.05  Aligned_cols=106  Identities=11%  Similarity=-0.016  Sum_probs=88.7

Q ss_pred             ccCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccc
Q 026513           68 IKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVED  147 (237)
Q Consensus        68 ~~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  147 (237)
                      +.++.+|||+|||+|.++..+++....+|+|+|+++.+++.|++++..+++..   ++.++.+|+.+.            
T Consensus       115 ~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~---~v~~~~~d~~~~------------  179 (312)
T 3vc1_A          115 AGPDDTLVDAGCGRGGSMVMAHRRFGSRVEGVTLSAAQADFGNRRARELRIDD---HVRSRVCNMLDT------------  179 (312)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTT---TEEEEECCTTSC------------
T ss_pred             CCCCCEEEEecCCCCHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCC---ceEEEECChhcC------------
Confidence            35788999999999999999987634679999999999999999999988764   488889998631            


Q ss_pred             cccccccCCCCCCceeEEEEeCChHHH--HHHHHHHhHhcCCCeEEEEecc
Q 026513          148 LSSHKIRGISQTEKYDVVIANILLNPL--LQLADHIVSYAKPGAVVGISGI  196 (237)
Q Consensus       148 ~~~~~~~~~~~~~~fD~I~~n~~~~~~--~~~l~~~~~~L~~gG~liis~~  196 (237)
                              ..++++||+|+++.++++.  ..+++.+.++|+|||++++.+.
T Consensus       180 --------~~~~~~fD~V~~~~~l~~~~~~~~l~~~~~~LkpgG~l~~~~~  222 (312)
T 3vc1_A          180 --------PFDKGAVTASWNNESTMYVDLHDLFSEHSRFLKVGGRYVTITG  222 (312)
T ss_dssp             --------CCCTTCEEEEEEESCGGGSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             --------CCCCCCEeEEEECCchhhCCHHHHHHHHHHHcCCCcEEEEEEc
Confidence                    1235799999998887654  5789999999999999999753

>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A

Probab=99.59  E-value=2.3e-15  Score=124.68  Aligned_cols=112  Identities=20%  Similarity=0.258  Sum_probs=80.3

Q ss_pred             CCCeEEEEcCcchHHHHHHHHh---CCCeEEEEeCCHHHHHHHHHHHHHc---CCCCCc---------------------
Q 026513           70 GGELFLDYGTGSGILGIAAIKF---GAAMSVGADIDPQAIKSAHQNAALN---NIGPKK---------------------  122 (237)
Q Consensus        70 ~~~~vLDlG~G~G~~~~~la~~---~~~~v~~vD~s~~~i~~a~~~~~~~---~~~~~~---------------------  122 (237)
                      ++.+|||+|||+|.+++.+++.   +..+|+|+|+|+.+++.|++++...   ++.+..                     
T Consensus        51 ~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (250)
T 1o9g_A           51 GPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAAQA  130 (250)
T ss_dssp             SCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred             CCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHHhhhccccccchhhhhhhhhcccccchhhhhh
Confidence            5679999999999999998865   4568999999999999999988765   332100                     


Q ss_pred             -ceEE-------------eccCccccccccccccccccccccccccCCCCCCceeEEEEeCChHH------------HHH
Q 026513          123 -MKLH-------------LVPDRTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLNP------------LLQ  176 (237)
Q Consensus       123 -~~v~-------------~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~~~------------~~~  176 (237)
                       -++.             +.++|+.+....               .......+||+|+||+|+..            +..
T Consensus       131 ~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~---------------~~~~~~~~fD~Iv~npp~~~~~~~~~~~~~~~~~~  195 (250)
T 1o9g_A          131 ARRLRERLTAEGGALPCAIRTADVFDPRAL---------------SAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAG  195 (250)
T ss_dssp             HHHHHHHHHHTTSSCCEEEEECCTTCGGGH---------------HHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHH
T ss_pred             hhhhhhhccccccccccceeeccccccccc---------------ccccCCCCceEEEeCCCeeccccccccccccHHHH
Confidence             0033             667776531100               00002348999999998533            347


Q ss_pred             HHHHHhHhcCCCeEEEEecc
Q 026513          177 LADHIVSYAKPGAVVGISGI  196 (237)
Q Consensus       177 ~l~~~~~~L~~gG~liis~~  196 (237)
                      ++..+.++|+|||++++.+.
T Consensus       196 ~l~~~~~~LkpgG~l~~~~~  215 (250)
T 1o9g_A          196 LLRSLASALPAHAVIAVTDR  215 (250)
T ss_dssp             HHHHHHHHSCTTCEEEEEES
T ss_pred             HHHHHHHhcCCCcEEEEeCc
Confidence            89999999999999999644

>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*

Probab=99.59  E-value=1.5e-14  Score=116.71  Aligned_cols=99  Identities=18%  Similarity=0.201  Sum_probs=82.3

Q ss_pred             cCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccccc
Q 026513           69 KGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDL  148 (237)
Q Consensus        69 ~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~  148 (237)
                      .++.+|||+|||+|.++..+++.+ .+|+|+|+|+.+++.|++++...+      ++.++++|+.+              
T Consensus        50 ~~~~~vLDiGcG~G~~~~~l~~~~-~~v~~vD~s~~~~~~a~~~~~~~~------~~~~~~~d~~~--------------  108 (216)
T 3ofk_A           50 GAVSNGLEIGCAAGAFTEKLAPHC-KRLTVIDVMPRAIGRACQRTKRWS------HISWAATDILQ--------------  108 (216)
T ss_dssp             SSEEEEEEECCTTSHHHHHHGGGE-EEEEEEESCHHHHHHHHHHTTTCS------SEEEEECCTTT--------------
T ss_pred             CCCCcEEEEcCCCCHHHHHHHHcC-CEEEEEECCHHHHHHHHHhcccCC------CeEEEEcchhh--------------
Confidence            456799999999999999999875 579999999999999999876543      38888998763              


Q ss_pred             ccccccCCCCCCceeEEEEeCChHHH------HHHHHHHhHhcCCCeEEEEec
Q 026513          149 SSHKIRGISQTEKYDVVIANILLNPL------LQLADHIVSYAKPGAVVGISG  195 (237)
Q Consensus       149 ~~~~~~~~~~~~~fD~I~~n~~~~~~------~~~l~~~~~~L~~gG~liis~  195 (237)
                             ..+.++||+|+++.+++++      ..++..+.++|+|||.++++.
T Consensus       109 -------~~~~~~fD~v~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~  154 (216)
T 3ofk_A          109 -------FSTAELFDLIVVAEVLYYLEDMTQMRTAIDNMVKMLAPGGHLVFGS  154 (216)
T ss_dssp             -------CCCSCCEEEEEEESCGGGSSSHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             -------CCCCCCccEEEEccHHHhCCCHHHHHHHHHHHHHHcCCCCEEEEEe
Confidence                   2246799999999887554      356999999999999999964

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}

Probab=99.59  E-value=1.1e-14  Score=119.40  Aligned_cols=108  Identities=19%  Similarity=0.215  Sum_probs=87.1

Q ss_pred             HHHHHHhhccCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccc
Q 026513           60 CLLLLRRLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNE  139 (237)
Q Consensus        60 ~~~~l~~~~~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~  139 (237)
                      +...+...++++.+|||+|||+|.++..++..+ .+|+|+|+|+.+++.++++..   ..    ++.++.+|+.+.    
T Consensus        43 ~~~~l~~~~~~~~~vLDiG~G~G~~~~~l~~~~-~~v~~vD~s~~~~~~a~~~~~---~~----~~~~~~~d~~~~----  110 (242)
T 3l8d_A           43 IIPFFEQYVKKEAEVLDVGCGDGYGTYKLSRTG-YKAVGVDISEVMIQKGKERGE---GP----DLSFIKGDLSSL----  110 (242)
T ss_dssp             HHHHHHHHSCTTCEEEEETCTTSHHHHHHHHTT-CEEEEEESCHHHHHHHHTTTC---BT----TEEEEECBTTBC----
T ss_pred             HHHHHHHHcCCCCeEEEEcCCCCHHHHHHHHcC-CeEEEEECCHHHHHHHHhhcc---cC----CceEEEcchhcC----
Confidence            455555566788999999999999999999884 479999999999999988742   12    378888887631    


Q ss_pred             cccccccccccccccCCCCCCceeEEEEeCChHHH---HHHHHHHhHhcCCCeEEEEec
Q 026513          140 RVDGVVEDLSSHKIRGISQTEKYDVVIANILLNPL---LQLADHIVSYAKPGAVVGISG  195 (237)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~~~~---~~~l~~~~~~L~~gG~liis~  195 (237)
                                      ..++++||+|++..++++.   ..++..+.++|+|||.++++.
T Consensus       111 ----------------~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~  153 (242)
T 3l8d_A          111 ----------------PFENEQFEAIMAINSLEWTEEPLRALNEIKRVLKSDGYACIAI  153 (242)
T ss_dssp             ----------------SSCTTCEEEEEEESCTTSSSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ----------------CCCCCCccEEEEcChHhhccCHHHHHHHHHHHhCCCeEEEEEE
Confidence                            1236799999999887654   478999999999999999975

>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}

Probab=99.59  E-value=2.7e-14  Score=115.12  Aligned_cols=118  Identities=16%  Similarity=0.130  Sum_probs=91.7

Q ss_pred             hhHHHHHHHHHhhccCCCeEEEEcCcchHHHHHHHHh-C-CCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcc
Q 026513           55 ATTKLCLLLLRRLIKGGELFLDYGTGSGILGIAAIKF-G-AAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRT  132 (237)
Q Consensus        55 ~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~la~~-~-~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~  132 (237)
                      +....++..+... .++.+|||+|||+|..+..+++. + ..+|+++|+|+.+++.|++++...++.+   ++.++.+|.
T Consensus        42 ~~~~~~l~~l~~~-~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~---~v~~~~~d~  117 (210)
T 3c3p_A           42 RQTGRLLYLLARI-KQPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGLID---RVELQVGDP  117 (210)
T ss_dssp             HHHHHHHHHHHHH-HCCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHSGGG---GEEEEESCH
T ss_pred             HHHHHHHHHHHHh-hCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCc---eEEEEEecH
Confidence            3333444443332 45679999999999999999865 3 5789999999999999999998887754   488889987


Q ss_pred             ccccccccccccccccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEecc
Q 026513          133 FTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGI  196 (237)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~~  196 (237)
                      .+.                 +...  .+ ||+|+++.....+..+++.+.++|+|||++++...
T Consensus       118 ~~~-----------------~~~~--~~-fD~v~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~  161 (210)
T 3c3p_A          118 LGI-----------------AAGQ--RD-IDILFMDCDVFNGADVLERMNRCLAKNALLIAVNA  161 (210)
T ss_dssp             HHH-----------------HTTC--CS-EEEEEEETTTSCHHHHHHHHGGGEEEEEEEEEESS
T ss_pred             HHH-----------------hccC--CC-CCEEEEcCChhhhHHHHHHHHHhcCCCeEEEEECc
Confidence            531                 0111  35 99999998777778899999999999999999654

>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}

Probab=99.59  E-value=8.2e-15  Score=124.36  Aligned_cols=111  Identities=25%  Similarity=0.268  Sum_probs=80.7

Q ss_pred             cCCCeEEEEcCcchHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHHcCCCCC--------------------------
Q 026513           69 KGGELFLDYGTGSGILGIAAIKF-GAAMSVGADIDPQAIKSAHQNAALNNIGPK--------------------------  121 (237)
Q Consensus        69 ~~~~~vLDlG~G~G~~~~~la~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~--------------------------  121 (237)
                      .++.+|||+|||+|.++..++.. +..+|+|+|+|+.+++.|++++...+....                          
T Consensus        45 ~~~~~VLDiGCG~G~~~~~la~~~~~~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  124 (292)
T 3g07_A           45 FRGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKRS  124 (292)
T ss_dssp             TTTSEEEEESCTTCHHHHHHHHHTCCSEEEEEESCHHHHHHHHHTC----------------------------------
T ss_pred             cCCCcEEEeCCCCCHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhhhhhccccccccccccccccccccccccccc
Confidence            36789999999999999999875 678999999999999999998765432200                          


Q ss_pred             ----------------------------cceEEeccCccccccccccccccccccccccccCCCCCCceeEEEEeCChHH
Q 026513          122 ----------------------------KMKLHLVPDRTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLNP  173 (237)
Q Consensus       122 ----------------------------~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~~~  173 (237)
                                                  .-++.+.++|+.....              .+ .....++||+|+|..++++
T Consensus       125 ~~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~--------------~~-~~~~~~~fD~I~~~~vl~~  189 (292)
T 3g07_A          125 CFPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRD--------------DL-VEAQTPEYDVVLCLSLTKW  189 (292)
T ss_dssp             -----------------CCSSTTCCSSTTTTEEEEECCCCCSSH--------------HH-HTTCCCCEEEEEEESCHHH
T ss_pred             cccchhhhccCccccccccccccccccccccceEEecccccCcc--------------cc-ccccCCCcCEEEEChHHHH
Confidence                                        0137777887753110              00 0113579999999998744


Q ss_pred             H---------HHHHHHHhHhcCCCeEEEEe
Q 026513          174 L---------LQLADHIVSYAKPGAVVGIS  194 (237)
Q Consensus       174 ~---------~~~l~~~~~~L~~gG~liis  194 (237)
                      +         ..+++++.++|+|||+|++.
T Consensus       190 ihl~~~~~~~~~~l~~~~~~LkpGG~lil~  219 (292)
T 3g07_A          190 VHLNWGDEGLKRMFRRIYRHLRPGGILVLE  219 (292)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             hhhcCCHHHHHHHHHHHHHHhCCCcEEEEe
Confidence            3         46799999999999999995

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*

Probab=99.59  E-value=7e-15  Score=121.94  Aligned_cols=103  Identities=18%  Similarity=0.212  Sum_probs=84.4

Q ss_pred             ccCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccc
Q 026513           68 IKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVED  147 (237)
Q Consensus        68 ~~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  147 (237)
                      +.++.+|||+|||+|.++..+++....+|+|+|+|+.+++.|++++...  .    ++.++.+|+.+.            
T Consensus        53 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~--~----~~~~~~~d~~~~------------  114 (266)
T 3ujc_A           53 LNENSKVLDIGSGLGGGCMYINEKYGAHTHGIDICSNIVNMANERVSGN--N----KIIFEANDILTK------------  114 (266)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHTCCSC--T----TEEEEECCTTTC------------
T ss_pred             CCCCCEEEEECCCCCHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhhcC--C----CeEEEECccccC------------
Confidence            4578899999999999999998753567999999999999999886543  2    388888987631            


Q ss_pred             cccccccCCCCCCceeEEEEeCChHHH-----HHHHHHHhHhcCCCeEEEEecc
Q 026513          148 LSSHKIRGISQTEKYDVVIANILLNPL-----LQLADHIVSYAKPGAVVGISGI  196 (237)
Q Consensus       148 ~~~~~~~~~~~~~~fD~I~~n~~~~~~-----~~~l~~~~~~L~~gG~liis~~  196 (237)
                              ..++++||+|+++.+++++     ..+++.+.++|+|||.+++..+
T Consensus       115 --------~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~  160 (266)
T 3ujc_A          115 --------EFPENNFDLIYSRDAILALSLENKNKLFQKCYKWLKPTGTLLITDY  160 (266)
T ss_dssp             --------CCCTTCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             --------CCCCCcEEEEeHHHHHHhcChHHHHHHHHHHHHHcCCCCEEEEEEe
Confidence                    1236799999999887665     4679999999999999999764

>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*

Probab=99.59  E-value=2.3e-14  Score=120.91  Aligned_cols=107  Identities=20%  Similarity=0.232  Sum_probs=88.4

Q ss_pred             hccCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccc
Q 026513           67 LIKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVE  146 (237)
Q Consensus        67 ~~~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  146 (237)
                      .+.++.+|||+|||+|.++..+++.+..+++|+|+|+.+++.|++++...++..   ++.++++|+.+..          
T Consensus        61 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~---~v~~~~~d~~~~~----------  127 (298)
T 1ri5_A           61 YTKRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRF---KVFFRAQDSYGRH----------  127 (298)
T ss_dssp             HCCTTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSCCSS---EEEEEESCTTTSC----------
T ss_pred             hCCCCCeEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCc---cEEEEECCccccc----------
Confidence            357889999999999999999888877789999999999999999998776643   4888899876311          


Q ss_pred             ccccccccCCCCCCceeEEEEeCChHH-------HHHHHHHHhHhcCCCeEEEEec
Q 026513          147 DLSSHKIRGISQTEKYDVVIANILLNP-------LLQLADHIVSYAKPGAVVGISG  195 (237)
Q Consensus       147 ~~~~~~~~~~~~~~~fD~I~~n~~~~~-------~~~~l~~~~~~L~~gG~liis~  195 (237)
                               +..+++||+|+++.++++       ...++..+.++|+|||.+++..
T Consensus       128 ---------~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  174 (298)
T 1ri5_A          128 ---------MDLGKEFDVISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTV  174 (298)
T ss_dssp             ---------CCCSSCEEEEEEESCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             ---------cCCCCCcCEEEECchhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence                     113578999999987744       3578999999999999999874

>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42

Probab=99.59  E-value=7.4e-15  Score=121.23  Aligned_cols=129  Identities=15%  Similarity=0.117  Sum_probs=98.2

Q ss_pred             cCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccccc
Q 026513           69 KGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDL  148 (237)
Q Consensus        69 ~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~  148 (237)
                      .++.+|||+|||+|.++..++..+..+|+++|+|+.+++.|++++...  .    .+.++++|+.+.             
T Consensus        92 ~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~--~----~~~~~~~d~~~~-------------  152 (254)
T 1xtp_A           92 HGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAGM--P----VGKFILASMETA-------------  152 (254)
T ss_dssp             CCCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTTTS--S----EEEEEESCGGGC-------------
T ss_pred             cCCCEEEEECCCcCHHHHHHHHhhcCEEEEEeCCHHHHHHHHHHhccC--C----ceEEEEccHHHC-------------
Confidence            467899999999999999998776778999999999999999887543  2    478888887631             


Q ss_pred             ccccccCCCCCCceeEEEEeCChHHH-----HHHHHHHhHhcCCCeEEEEeccC---------------CCCHHHHHHHH
Q 026513          149 SSHKIRGISQTEKYDVVIANILLNPL-----LQLADHIVSYAKPGAVVGISGIL---------------SEQLPHIINRY  208 (237)
Q Consensus       149 ~~~~~~~~~~~~~fD~I~~n~~~~~~-----~~~l~~~~~~L~~gG~liis~~~---------------~~~~~~~~~~~  208 (237)
                             ..+.++||+|++...++++     ..++..+.++|+|||+++++...               .....++...+
T Consensus       153 -------~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  225 (254)
T 1xtp_A          153 -------TLPPNTYDLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENCSTGDRFLVDKEDSSLTRSDIHYKRLF  225 (254)
T ss_dssp             -------CCCSSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBC--CCEEEETTTTEEEBCHHHHHHHH
T ss_pred             -------CCCCCCeEEEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccceecccCCcccCCHHHHHHHH
Confidence                   1235689999999887654     46799999999999999997531               11345666666


Q ss_pred             hhc-cccceeeecCCE
Q 026513          209 SEF-LEDILVSEMDDW  223 (237)
Q Consensus       209 ~~~-~~~~~~~~~~~w  223 (237)
                      ... |+.++......|
T Consensus       226 ~~aGf~~~~~~~~~~~  241 (254)
T 1xtp_A          226 NESGVRVVKEAFQEEW  241 (254)
T ss_dssp             HHHTCCEEEEEECTTC
T ss_pred             HHCCCEEEEeeecCCC
Confidence            543 777666554443

>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38

Probab=99.59  E-value=1e-13  Score=118.96  Aligned_cols=105  Identities=14%  Similarity=0.192  Sum_probs=86.4

Q ss_pred             ccCCCeEEEEcCcchHHHHHHHHh--CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccc
Q 026513           68 IKGGELFLDYGTGSGILGIAAIKF--GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVV  145 (237)
Q Consensus        68 ~~~~~~vLDlG~G~G~~~~~la~~--~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  145 (237)
                      +.+|.+|||+|||+|..+..++..  +..+|+|+|+|+.+++.+++++...++.+    +.++++|..+..         
T Consensus       116 ~~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~~~----v~~~~~D~~~~~---------  182 (315)
T 1ixk_A          116 PKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLN----VILFHSSSLHIG---------  182 (315)
T ss_dssp             CCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCS----EEEESSCGGGGG---------
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCCCe----EEEEECChhhcc---------
Confidence            467889999999999999999875  34789999999999999999999998875    888899986321         


Q ss_pred             cccccccccCCCCCCceeEEEEeCChH-------------------------HHHHHHHHHhHhcCCCeEEEEecc
Q 026513          146 EDLSSHKIRGISQTEKYDVVIANILLN-------------------------PLLQLADHIVSYAKPGAVVGISGI  196 (237)
Q Consensus       146 ~~~~~~~~~~~~~~~~fD~I~~n~~~~-------------------------~~~~~l~~~~~~L~~gG~liis~~  196 (237)
                               .  ..++||+|++|+|..                         ....+++.+.++|+|||++++++.
T Consensus       183 ---------~--~~~~fD~Il~d~Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~stc  247 (315)
T 1ixk_A          183 ---------E--LNVEFDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTC  247 (315)
T ss_dssp             ---------G--GCCCEEEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEES
T ss_pred             ---------c--ccccCCEEEEeCCCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEeC
Confidence                     1  246899999998731                         124788999999999999999743

>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}

Probab=99.59  E-value=5.7e-15  Score=118.80  Aligned_cols=101  Identities=10%  Similarity=0.092  Sum_probs=84.3

Q ss_pred             ccCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccc
Q 026513           68 IKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVED  147 (237)
Q Consensus        68 ~~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  147 (237)
                      ..++.+|||+|||+|.++..+++. ..+|+++|+|+.+++.|++++...++.+    +.++.+|..+.            
T Consensus        75 ~~~~~~vLdiG~G~G~~~~~la~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~----v~~~~~d~~~~------------  137 (210)
T 3lbf_A           75 LTPQSRVLEIGTGSGYQTAILAHL-VQHVCSVERIKGLQWQARRRLKNLDLHN----VSTRHGDGWQG------------  137 (210)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHH-SSEEEEEESCHHHHHHHHHHHHHTTCCS----EEEEESCGGGC------------
T ss_pred             CCCCCEEEEEcCCCCHHHHHHHHh-CCEEEEEecCHHHHHHHHHHHHHcCCCc----eEEEECCcccC------------
Confidence            467889999999999999999988 5789999999999999999999888775    88889997631            


Q ss_pred             cccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEecc
Q 026513          148 LSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGI  196 (237)
Q Consensus       148 ~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~~  196 (237)
                              ....++||+|+++.+++++.   +.+.++|+|||+++++.-
T Consensus       138 --------~~~~~~~D~i~~~~~~~~~~---~~~~~~L~pgG~lv~~~~  175 (210)
T 3lbf_A          138 --------WQARAPFDAIIVTAAPPEIP---TALMTQLDEGGILVLPVG  175 (210)
T ss_dssp             --------CGGGCCEEEEEESSBCSSCC---THHHHTEEEEEEEEEEEC
T ss_pred             --------CccCCCccEEEEccchhhhh---HHHHHhcccCcEEEEEEc
Confidence                    22256899999987765543   468899999999999743

>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli}

Probab=99.58  E-value=7.6e-14  Score=110.62  Aligned_cols=103  Identities=19%  Similarity=0.054  Sum_probs=83.8

Q ss_pred             hccCCCeEEEEcCcchHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccc
Q 026513           67 LIKGGELFLDYGTGSGILGIAAIKF-GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVV  145 (237)
Q Consensus        67 ~~~~~~~vLDlG~G~G~~~~~la~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  145 (237)
                      .+++..+|||+|||+|.+++.++.. +..+|+|+|+|+.|++.+++++..+|+..   ++.+  .|..+           
T Consensus        46 ~l~~~~~VLDlGCG~GplAl~l~~~~p~a~~~A~Di~~~~leiar~~~~~~g~~~---~v~~--~d~~~-----------  109 (200)
T 3fzg_A           46 NIKHVSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAFLSSIIGKLKTTI---KYRF--LNKES-----------  109 (200)
T ss_dssp             HSCCCSEEEEETCTTHHHHHHHHCSSCCCEEEEECSCHHHHHHHHHHHHHSCCSS---EEEE--ECCHH-----------
T ss_pred             hcCCCCeEEEecCCCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCc---cEEE--ecccc-----------
Confidence            3567889999999999999999865 55699999999999999999999998874   3555  44331           


Q ss_pred             cccccccccCCCCCCceeEEEEeCChHHHHH---HHHHHhHhcCCCeEEEEec
Q 026513          146 EDLSSHKIRGISQTEKYDVVIANILLNPLLQ---LADHIVSYAKPGAVVGISG  195 (237)
Q Consensus       146 ~~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~---~l~~~~~~L~~gG~liis~  195 (237)
                                ..+.++||+|++.-.+|++.+   .+.++.+.|+|||+++--.
T Consensus       110 ----------~~~~~~~DvVLa~k~LHlL~~~~~al~~v~~~L~pggvfISfp  152 (200)
T 3fzg_A          110 ----------DVYKGTYDVVFLLKMLPVLKQQDVNILDFLQLFHTQNFVISFP  152 (200)
T ss_dssp             ----------HHTTSEEEEEEEETCHHHHHHTTCCHHHHHHTCEEEEEEEEEE
T ss_pred             ----------cCCCCCcChhhHhhHHHhhhhhHHHHHHHHHHhCCCCEEEEeC
Confidence                      123678999999999999854   3668999999999998743

>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A

Probab=99.58  E-value=1.3e-14  Score=127.68  Aligned_cols=113  Identities=19%  Similarity=0.185  Sum_probs=87.3

Q ss_pred             ccCCCeEEEEcCcchHHHHHHHHh--CCCeEEEEeCCHHHHHHHHHHHHHc-----C-CCCCcceEEeccCccccccccc
Q 026513           68 IKGGELFLDYGTGSGILGIAAIKF--GAAMSVGADIDPQAIKSAHQNAALN-----N-IGPKKMKLHLVPDRTFTASMNE  139 (237)
Q Consensus        68 ~~~~~~vLDlG~G~G~~~~~la~~--~~~~v~~vD~s~~~i~~a~~~~~~~-----~-~~~~~~~v~~~~~d~~~~~~~~  139 (237)
                      ..++.+|||+|||+|.++..+++.  +..+|+|+|+|+.+++.|++++...     + ....  ++.++++|+.+.... 
T Consensus        81 ~~~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~--~v~~~~~d~~~l~~~-  157 (383)
T 4fsd_A           81 SLEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRS--NVRFLKGFIENLATA-  157 (383)
T ss_dssp             GGTTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCC--CEEEEESCTTCGGGC-
T ss_pred             CCCCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCC--ceEEEEccHHHhhhc-
Confidence            457889999999999999999865  4568999999999999999998754     3 2111  388889988632000 


Q ss_pred             cccccccccccccccCCCCCCceeEEEEeCChHHH---HHHHHHHhHhcCCCeEEEEecc
Q 026513          140 RVDGVVEDLSSHKIRGISQTEKYDVVIANILLNPL---LQLADHIVSYAKPGAVVGISGI  196 (237)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~~~~---~~~l~~~~~~L~~gG~liis~~  196 (237)
                                   .....++++||+|+++.++++.   ..++.++.++|+|||+++++.+
T Consensus       158 -------------~~~~~~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~~~  204 (383)
T 4fsd_A          158 -------------EPEGVPDSSVDIVISNCVCNLSTNKLALFKEIHRVLRDGGELYFSDV  204 (383)
T ss_dssp             -------------BSCCCCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             -------------ccCCCCCCCEEEEEEccchhcCCCHHHHHHHHHHHcCCCCEEEEEEe
Confidence                         0002346799999999988765   5789999999999999999754

>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}

Probab=99.57  E-value=2.5e-14  Score=121.42  Aligned_cols=118  Identities=12%  Similarity=0.107  Sum_probs=88.8

Q ss_pred             HHHHHHhh-ccCCCeEEEEcCcchHHHHHHHH--hCCCeEEEEeCCHHHHHHHHHHHHHc-CCCCCcceEEeccCccccc
Q 026513           60 CLLLLRRL-IKGGELFLDYGTGSGILGIAAIK--FGAAMSVGADIDPQAIKSAHQNAALN-NIGPKKMKLHLVPDRTFTA  135 (237)
Q Consensus        60 ~~~~l~~~-~~~~~~vLDlG~G~G~~~~~la~--~~~~~v~~vD~s~~~i~~a~~~~~~~-~~~~~~~~v~~~~~d~~~~  135 (237)
                      +...+... ..++.+|||+|||+|.++..+++  .+..+|+|+|+|+.+++.|++++... +...   ++.++++|+.+.
T Consensus        25 ~~~~l~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~---~v~~~~~d~~~~  101 (299)
T 3g5t_A           25 FYKMIDEYHDGERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYK---NVSFKISSSDDF  101 (299)
T ss_dssp             HHHHHHHHCCSCCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-CCT---TEEEEECCTTCC
T ss_pred             HHHHHHHHhcCCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccCCCC---ceEEEEcCHHhC
Confidence            34444443 35788999999999999999996  36788999999999999999998876 2222   388889998642


Q ss_pred             cccccccccccccccccccCCCCCCceeEEEEeCChHHH--HHHHHHHhHhcCCCeEEEEe
Q 026513          136 SMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLNPL--LQLADHIVSYAKPGAVVGIS  194 (237)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~~~~--~~~l~~~~~~L~~gG~liis  194 (237)
                      ...+              ......++||+|+++.+++++  ..+++.+.++|+|||.+++.
T Consensus       102 ~~~~--------------~~~~~~~~fD~V~~~~~l~~~~~~~~l~~~~~~LkpgG~l~i~  148 (299)
T 3g5t_A          102 KFLG--------------ADSVDKQKIDMITAVECAHWFDFEKFQRSAYANLRKDGTIAIW  148 (299)
T ss_dssp             GGGC--------------TTTTTSSCEEEEEEESCGGGSCHHHHHHHHHHHEEEEEEEEEE
T ss_pred             Cccc--------------cccccCCCeeEEeHhhHHHHhCHHHHHHHHHHhcCCCcEEEEE
Confidence            2110              000012689999999987665  46799999999999999983

>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}

Probab=99.57  E-value=1.2e-14  Score=119.90  Aligned_cols=120  Identities=10%  Similarity=0.078  Sum_probs=87.2

Q ss_pred             cCCCeEEEEcCcchHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHH------cCCCCCcceEEeccCccccccccccc
Q 026513           69 KGGELFLDYGTGSGILGIAAIKF-GAAMSVGADIDPQAIKSAHQNAAL------NNIGPKKMKLHLVPDRTFTASMNERV  141 (237)
Q Consensus        69 ~~~~~vLDlG~G~G~~~~~la~~-~~~~v~~vD~s~~~i~~a~~~~~~------~~~~~~~~~v~~~~~d~~~~~~~~~~  141 (237)
                      .++.+|||||||+|.++..+++. +...++|+|+|+.+++.|++++..      .+..+    +.++.+|+.+.      
T Consensus        45 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~n----v~~~~~d~~~~------  114 (235)
T 3ckk_A           45 QAQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQN----IACLRSNAMKH------  114 (235)
T ss_dssp             -CCEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTT----EEEEECCTTTC------
T ss_pred             CCCCeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCe----EEEEECcHHHh------
Confidence            45678999999999999999865 567899999999999999988764      34554    88889987631      


Q ss_pred             cccccccccccccCCCCCCceeEEEEeCChHHH-----------HHHHHHHhHhcCCCeEEEEeccCCCCHHHHHHHHh
Q 026513          142 DGVVEDLSSHKIRGISQTEKYDVVIANILLNPL-----------LQLADHIVSYAKPGAVVGISGILSEQLPHIINRYS  209 (237)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~~~~-----------~~~l~~~~~~L~~gG~liis~~~~~~~~~~~~~~~  209 (237)
                                 +....++++||.|+++.+-.+.           ..+++.+.++|+|||.+++..............+.
T Consensus       115 -----------l~~~~~~~~~D~v~~~~~dp~~k~~h~krr~~~~~~l~~~~~~LkpGG~l~~~td~~~~~~~~~~~l~  182 (235)
T 3ckk_A          115 -----------LPNFFYKGQLTKMFFLFPDPHFKRTKHKWRIISPTLLAEYAYVLRVGGLVYTITDVLELHDWMCTHFE  182 (235)
T ss_dssp             -----------HHHHCCTTCEEEEEEESCC-----------CCCHHHHHHHHHHEEEEEEEEEEESCHHHHHHHHHHHH
T ss_pred             -----------hhhhCCCcCeeEEEEeCCCchhhhhhhhhhhhhHHHHHHHHHHCCCCCEEEEEeCCHHHHHHHHHHHH
Confidence                       1111235789999998764332           36899999999999999997443333334444444

>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*

Probab=99.57  E-value=2.6e-14  Score=122.16  Aligned_cols=143  Identities=15%  Similarity=0.140  Sum_probs=101.6

Q ss_pred             cCCCeEEEEcCcchHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHH--cCCCCCcceEEeccCccccccccccccccc
Q 026513           69 KGGELFLDYGTGSGILGIAAIKF-GAAMSVGADIDPQAIKSAHQNAAL--NNIGPKKMKLHLVPDRTFTASMNERVDGVV  145 (237)
Q Consensus        69 ~~~~~vLDlG~G~G~~~~~la~~-~~~~v~~vD~s~~~i~~a~~~~~~--~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  145 (237)
                      +++.+|||+|||+|.++..+++. +..+|+++|+|+.+++.|++++..  .+....  ++.++.+|+.+..         
T Consensus        94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~--~v~~~~~D~~~~~---------  162 (304)
T 3bwc_A           94 PKPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISRSLADP--RATVRVGDGLAFV---------  162 (304)
T ss_dssp             SSCCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCT--TEEEEESCHHHHH---------
T ss_pred             CCCCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCC--cEEEEECcHHHHH---------
Confidence            56789999999999999999976 567899999999999999998742  111111  4788889876311         


Q ss_pred             cccccccccCCCCCCceeEEEEeCChHHH-------HHHHHHHhHhcCCCeEEEEeccC----CCCHHHHHHHHhhc-cc
Q 026513          146 EDLSSHKIRGISQTEKYDVVIANILLNPL-------LQLADHIVSYAKPGAVVGISGIL----SEQLPHIINRYSEF-LE  213 (237)
Q Consensus       146 ~~~~~~~~~~~~~~~~fD~I~~n~~~~~~-------~~~l~~~~~~L~~gG~liis~~~----~~~~~~~~~~~~~~-~~  213 (237)
                              .. ..+++||+|+++.+....       .++++.+.+.|+|||++++....    .....++...+++. |.
T Consensus       163 --------~~-~~~~~fDvIi~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~GF~  233 (304)
T 3bwc_A          163 --------RQ-TPDNTYDVVIIDTTDPAGPASKLFGEAFYKDVLRILKPDGICCNQGESIWLDLELIEKMSRFIRETGFA  233 (304)
T ss_dssp             --------HS-SCTTCEEEEEEECC---------CCHHHHHHHHHHEEEEEEEEEEECCTTTCHHHHHHHHHHHHHHTCS
T ss_pred             --------Hh-ccCCceeEEEECCCCccccchhhhHHHHHHHHHHhcCCCcEEEEecCCcccchHHHHHHHHHHHhCCCC
Confidence                    01 025689999998865332       57899999999999999996321    12345566666655 66


Q ss_pred             cceeee-------cCCEEEEEEEEc
Q 026513          214 DILVSE-------MDDWTCVSGKKK  231 (237)
Q Consensus       214 ~~~~~~-------~~~w~~~~~~~~  231 (237)
                      .+....       .+.|..++++|.
T Consensus       234 ~v~~~~~~vP~yp~g~w~f~~as~~  258 (304)
T 3bwc_A          234 SVQYALMHVPTYPCGSIGTLVCSKK  258 (304)
T ss_dssp             EEEEEECCCTTSTTSCCEEEEEESS
T ss_pred             cEEEEEeecccccCcceEEEEEeCC
Confidence            554432       478999888875

>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}

Probab=99.57  E-value=3.6e-14  Score=116.19  Aligned_cols=106  Identities=15%  Similarity=0.069  Sum_probs=82.7

Q ss_pred             ccCCCeEEEEcCcchHHHHHHHHh--CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccc
Q 026513           68 IKGGELFLDYGTGSGILGIAAIKF--GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVV  145 (237)
Q Consensus        68 ~~~~~~vLDlG~G~G~~~~~la~~--~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  145 (237)
                      +.++.+|||+|||+|.++..+++.  +..+|+|+|+|+.+++.+.++++.+  .    .+.++.+|+.+...        
T Consensus        75 ~~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~--~----~v~~~~~d~~~~~~--------  140 (233)
T 2ipx_A           75 IKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKR--T----NIIPVIEDARHPHK--------  140 (233)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHC--T----TEEEECSCTTCGGG--------
T ss_pred             CCCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhcc--C----CeEEEEcccCChhh--------
Confidence            467889999999999999999876  4578999999999998888888765  2    28888999864210        


Q ss_pred             cccccccccCCCCCCceeEEEEeCChH-HHHHHHHHHhHhcCCCeEEEEecc
Q 026513          146 EDLSSHKIRGISQTEKYDVVIANILLN-PLLQLADHIVSYAKPGAVVGISGI  196 (237)
Q Consensus       146 ~~~~~~~~~~~~~~~~fD~I~~n~~~~-~~~~~l~~~~~~L~~gG~liis~~  196 (237)
                               .....++||+|+++++.. ....++.++.+.|+|||++++++.
T Consensus       141 ---------~~~~~~~~D~V~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~~~  183 (233)
T 2ipx_A          141 ---------YRMLIAMVDVIFADVAQPDQTRIVALNAHTFLRNGGHFVISIK  183 (233)
T ss_dssp             ---------GGGGCCCEEEEEECCCCTTHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             ---------hcccCCcEEEEEEcCCCccHHHHHHHHHHHHcCCCeEEEEEEc
Confidence                     001246899999998732 234568889999999999999754

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}

Probab=99.57  E-value=2e-14  Score=120.39  Aligned_cols=104  Identities=20%  Similarity=0.322  Sum_probs=88.3

Q ss_pred             ccCCCeEEEEcCcchHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccc
Q 026513           68 IKGGELFLDYGTGSGILGIAAIKF-GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVE  146 (237)
Q Consensus        68 ~~~~~~vLDlG~G~G~~~~~la~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  146 (237)
                      +.++.+|||+|||+|.++..+++. +..+++|+|+|+.+++.|++++...++.+    +.++.+|..+.           
T Consensus        35 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~----~~~~~~d~~~~-----------   99 (276)
T 3mgg_A           35 YPPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGIKN----VKFLQANIFSL-----------   99 (276)
T ss_dssp             CCTTCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCCS----EEEEECCGGGC-----------
T ss_pred             CCCCCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCC----cEEEEcccccC-----------
Confidence            467899999999999999999876 36789999999999999999999888765    88888987631           


Q ss_pred             ccccccccCCCCCCceeEEEEeCChHHH---HHHHHHHhHhcCCCeEEEEec
Q 026513          147 DLSSHKIRGISQTEKYDVVIANILLNPL---LQLADHIVSYAKPGAVVGISG  195 (237)
Q Consensus       147 ~~~~~~~~~~~~~~~fD~I~~n~~~~~~---~~~l~~~~~~L~~gG~liis~  195 (237)
                               ..++++||+|+++.+++++   ..++..+.++|+|||.+++..
T Consensus       100 ---------~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~  142 (276)
T 3mgg_A          100 ---------PFEDSSFDHIFVCFVLEHLQSPEEALKSLKKVLKPGGTITVIE  142 (276)
T ss_dssp             ---------CSCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ---------CCCCCCeeEEEEechhhhcCCHHHHHHHHHHHcCCCcEEEEEE
Confidence                     2235799999999887654   478999999999999999953

>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*

Probab=99.57  E-value=8.9e-16  Score=126.23  Aligned_cols=112  Identities=19%  Similarity=0.090  Sum_probs=88.0

Q ss_pred             HHHHHHHHHhhccCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccc
Q 026513           57 TKLCLLLLRRLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTAS  136 (237)
Q Consensus        57 ~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~  136 (237)
                      ...+...+.. ..++.+|||+|||+|.++..+++.+ .+|+|+|+|+.+++.|++++..+++..   ++.++++|+.+. 
T Consensus        66 ~~~l~~~~~~-~~~~~~vLD~gcG~G~~~~~la~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~---~~~~~~~d~~~~-  139 (241)
T 3gdh_A           66 AEHIAGRVSQ-SFKCDVVVDAFCGVGGNTIQFALTG-MRVIAIDIDPVKIALARNNAEVYGIAD---KIEFICGDFLLL-  139 (241)
T ss_dssp             HHHHHHHHHH-HSCCSEEEETTCTTSHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHTTCGG---GEEEEESCHHHH-
T ss_pred             HHHHHHHhhh-ccCCCEEEECccccCHHHHHHHHcC-CEEEEEECCHHHHHHHHHHHHHcCCCc---CeEEEECChHHh-
Confidence            3444444332 2378899999999999999999886 789999999999999999999988742   388999998631 


Q ss_pred             ccccccccccccccccccCCCCCCceeEEEEeCChHHHHH---HHHHHhHhcCCCeEEEEe
Q 026513          137 MNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLNPLLQ---LADHIVSYAKPGAVVGIS  194 (237)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~---~l~~~~~~L~~gG~liis  194 (237)
                                          .+..+||+|++++++++...   .+..+.++|+|||.+++.
T Consensus       140 --------------------~~~~~~D~v~~~~~~~~~~~~~~~~~~~~~~L~pgG~~i~~  180 (241)
T 3gdh_A          140 --------------------ASFLKADVVFLSPPWGGPDYATAETFDIRTMMSPDGFEIFR  180 (241)
T ss_dssp             --------------------GGGCCCSEEEECCCCSSGGGGGSSSBCTTTSCSSCHHHHHH
T ss_pred             --------------------cccCCCCEEEECCCcCCcchhhhHHHHHHhhcCCcceeHHH
Confidence                                13568999999999866432   455678899999997764

>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}

Probab=99.56  E-value=8.4e-15  Score=128.38  Aligned_cols=101  Identities=21%  Similarity=0.339  Sum_probs=84.5

Q ss_pred             cCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccccc
Q 026513           69 KGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDL  148 (237)
Q Consensus        69 ~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~  148 (237)
                      .+|++|||||||+|.+++.+++.|+.+|+|+|.|+ +++.|+++++.|++.+   ++.++.+++.+              
T Consensus        82 ~~~k~VLDvG~GtGiLs~~Aa~aGA~~V~ave~s~-~~~~a~~~~~~n~~~~---~i~~i~~~~~~--------------  143 (376)
T 4hc4_A           82 LRGKTVLDVGAGTGILSIFCAQAGARRVYAVEASA-IWQQAREVVRFNGLED---RVHVLPGPVET--------------  143 (376)
T ss_dssp             HTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECST-THHHHHHHHHHTTCTT---TEEEEESCTTT--------------
T ss_pred             cCCCEEEEeCCCccHHHHHHHHhCCCEEEEEeChH-HHHHHHHHHHHcCCCc---eEEEEeeeeee--------------
Confidence            46899999999999999999999999999999997 8899999999999987   58899998763              


Q ss_pred             ccccccCCCCCCceeEEEEeCCh------HHHHHHHHHHhHhcCCCeEEEEe
Q 026513          149 SSHKIRGISQTEKYDVVIANILL------NPLLQLADHIVSYAKPGAVVGIS  194 (237)
Q Consensus       149 ~~~~~~~~~~~~~fD~I~~n~~~------~~~~~~l~~~~~~L~~gG~liis  194 (237)
                             +...++||+|++....      ..+..++....++|+|||.++-+
T Consensus       144 -------~~lpe~~DvivsE~~~~~l~~e~~l~~~l~a~~r~Lkp~G~~iP~  188 (376)
T 4hc4_A          144 -------VELPEQVDAIVSEWMGYGLLHESMLSSVLHARTKWLKEGGLLLPA  188 (376)
T ss_dssp             -------CCCSSCEEEEECCCCBTTBTTTCSHHHHHHHHHHHEEEEEEEESC
T ss_pred             -------ecCCccccEEEeecccccccccchhhhHHHHHHhhCCCCceECCc
Confidence                   2234789999996642      23457778888999999998753

>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}

Probab=99.56  E-value=2.8e-14  Score=124.27  Aligned_cols=104  Identities=17%  Similarity=0.186  Sum_probs=86.3

Q ss_pred             ccCCCeEEEEcCcchHHHHHHHHh--CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccc
Q 026513           68 IKGGELFLDYGTGSGILGIAAIKF--GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVV  145 (237)
Q Consensus        68 ~~~~~~vLDlG~G~G~~~~~la~~--~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  145 (237)
                      ..++.+|||+|||+|.+++.++..  +..+++|+|+|+.+++.|++|+...++.+    +.+.++|+.+..         
T Consensus       201 ~~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g~~~----i~~~~~D~~~~~---------  267 (354)
T 3tma_A          201 ARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGLSW----IRFLRADARHLP---------  267 (354)
T ss_dssp             CCTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTTCTT----CEEEECCGGGGG---------
T ss_pred             CCCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcCCCc----eEEEeCChhhCc---------
Confidence            457889999999999999999875  35789999999999999999999998864    788899987421         


Q ss_pred             cccccccccCCCCCCceeEEEEeCChH-----------HHHHHHHHHhHhcCCCeEEEEec
Q 026513          146 EDLSSHKIRGISQTEKYDVVIANILLN-----------PLLQLADHIVSYAKPGAVVGISG  195 (237)
Q Consensus       146 ~~~~~~~~~~~~~~~~fD~I~~n~~~~-----------~~~~~l~~~~~~L~~gG~liis~  195 (237)
                                 .+...||+|++|||+.           .+..+++.+.++|+|||.+++..
T Consensus       268 -----------~~~~~~D~Ii~npPyg~r~~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~t  317 (354)
T 3tma_A          268 -----------RFFPEVDRILANPPHGLRLGRKEGLFHLYWDFLRGALALLPPGGRVALLT  317 (354)
T ss_dssp             -----------GTCCCCSEEEECCCSCC----CHHHHHHHHHHHHHHHHTSCTTCEEEEEE
T ss_pred             -----------cccCCCCEEEECCCCcCccCCcccHHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence                       1235689999999952           13578899999999999999964

>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*

Probab=99.56  E-value=5.7e-14  Score=120.16  Aligned_cols=105  Identities=13%  Similarity=0.114  Sum_probs=87.7

Q ss_pred             ccCCCeEEEEcCcchHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccc
Q 026513           68 IKGGELFLDYGTGSGILGIAAIKF-GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVE  146 (237)
Q Consensus        68 ~~~~~~vLDlG~G~G~~~~~la~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  146 (237)
                      +.++.+|||+|||+|.++..+++. +. +|+|+|+|+.+++.|++++...++.+   ++.++.+|+.+            
T Consensus        88 ~~~~~~vLDiGcG~G~~~~~la~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~---~v~~~~~d~~~------------  151 (318)
T 2fk8_A           88 LKPGMTLLDIGCGWGTTMRRAVERFDV-NVIGLTLSKNQHARCEQVLASIDTNR---SRQVLLQGWED------------  151 (318)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHTSCCSS---CEEEEESCGGG------------
T ss_pred             CCCcCEEEEEcccchHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCC---ceEEEECChHH------------
Confidence            357889999999999999999876 54 79999999999999999998887754   47888888752            


Q ss_pred             ccccccccCCCCCCceeEEEEeCChHHH-----HHHHHHHhHhcCCCeEEEEeccCCC
Q 026513          147 DLSSHKIRGISQTEKYDVVIANILLNPL-----LQLADHIVSYAKPGAVVGISGILSE  199 (237)
Q Consensus       147 ~~~~~~~~~~~~~~~fD~I~~n~~~~~~-----~~~l~~~~~~L~~gG~liis~~~~~  199 (237)
                               +  +++||+|+++.+++++     ..+++.+.++|+|||.+++..+...
T Consensus       152 ---------~--~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~  198 (318)
T 2fk8_A          152 ---------F--AEPVDRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQSSVSY  198 (318)
T ss_dssp             ---------C--CCCCSEEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEEEECC
T ss_pred             ---------C--CCCcCEEEEeChHHhcCHHHHHHHHHHHHHhcCCCcEEEEEEeccC
Confidence                     2  2689999999887655     5789999999999999999766433

>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*

Probab=99.56  E-value=4e-14  Score=119.62  Aligned_cols=141  Identities=13%  Similarity=0.110  Sum_probs=100.0

Q ss_pred             ccCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHc--CC-------CCCcceEEeccCcccccccc
Q 026513           68 IKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALN--NI-------GPKKMKLHLVPDRTFTASMN  138 (237)
Q Consensus        68 ~~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~--~~-------~~~~~~v~~~~~d~~~~~~~  138 (237)
                      .+.+.+|||+|||+|.++..+++.+..+|+++|+|+.+++.|++++ ..  ++       ...  ++.++.+|..+..  
T Consensus        73 ~~~~~~VLdiG~G~G~~~~~l~~~~~~~v~~vDid~~~i~~ar~~~-~~~~~l~~~~~~~~~~--~v~~~~~D~~~~l--  147 (281)
T 1mjf_A           73 HPKPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLI-KIDNGLLEAMLNGKHE--KAKLTIGDGFEFI--  147 (281)
T ss_dssp             SSCCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHT-CTTTTHHHHHHTTCCS--SEEEEESCHHHHH--
T ss_pred             CCCCCeEEEEcCCcCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHH-hhccccccccccCCCC--cEEEEECchHHHh--
Confidence            3567899999999999999998777789999999999999999987 32  22       111  4788888875310  


Q ss_pred             ccccccccccccccccCCCCCCceeEEEEeCCh-----HH--HHHHHHHHhHhcCCCeEEEEec-cCCCC---HHHHHHH
Q 026513          139 ERVDGVVEDLSSHKIRGISQTEKYDVVIANILL-----NP--LLQLADHIVSYAKPGAVVGISG-ILSEQ---LPHIINR  207 (237)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~-----~~--~~~~l~~~~~~L~~gG~liis~-~~~~~---~~~~~~~  207 (237)
                                     ..   .++||+|+++++.     ..  ..++++.+.+.|+|||++++.. .....   ...+...
T Consensus       148 ---------------~~---~~~fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~~  209 (281)
T 1mjf_A          148 ---------------KN---NRGFDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQAGSVYLFTDELISAYKE  209 (281)
T ss_dssp             ---------------HH---CCCEEEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEEEEEETTTSHHHHHHHHHH
T ss_pred             ---------------cc---cCCeeEEEECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcCCcccCHHHHHHHHHH
Confidence                           01   4689999999873     12  2578999999999999999962 21112   3344444


Q ss_pred             Hhhccccceee------ecCCEEEEEEEEc
Q 026513          208 YSEFLEDILVS------EMDDWTCVSGKKK  231 (237)
Q Consensus       208 ~~~~~~~~~~~------~~~~w~~~~~~~~  231 (237)
                      +...|..+...      ..+.|..++++|.
T Consensus       210 l~~~f~~v~~~~~~vP~~~g~~~~~~as~~  239 (281)
T 1mjf_A          210 MKKVFDRVYYYSFPVIGYASPWAFLVGVKG  239 (281)
T ss_dssp             HHHHCSEEEEEEECCTTSSSSEEEEEEEES
T ss_pred             HHHHCCceEEEEEecCCCCceEEEEEeeCC
Confidence            44445444432      2478999999886

>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}

Probab=99.56  E-value=2.2e-14  Score=117.48  Aligned_cols=108  Identities=16%  Similarity=0.169  Sum_probs=85.7

Q ss_pred             HHHHHHHhhccCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccc
Q 026513           59 LCLLLLRRLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMN  138 (237)
Q Consensus        59 ~~~~~l~~~~~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~  138 (237)
                      ...+.+...++++.+|||+|||+|.++..+++.  .+++|+|+|+.+++.|++++...+.     ++.++.+|+.+    
T Consensus        22 ~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~--~~v~~vD~s~~~~~~a~~~~~~~~~-----~~~~~~~d~~~----   90 (243)
T 3d2l_A           22 EWVAWVLEQVEPGKRIADIGCGTGTATLLLADH--YEVTGVDLSEEMLEIAQEKAMETNR-----HVDFWVQDMRE----   90 (243)
T ss_dssp             HHHHHHHHHSCTTCEEEEESCTTCHHHHHHTTT--SEEEEEESCHHHHHHHHHHHHHTTC-----CCEEEECCGGG----
T ss_pred             HHHHHHHHHcCCCCeEEEecCCCCHHHHHHhhC--CeEEEEECCHHHHHHHHHhhhhcCC-----ceEEEEcChhh----
Confidence            344455555677899999999999999998877  7899999999999999999887652     26777888752    


Q ss_pred             ccccccccccccccccCCCCCCceeEEEEeC-ChHH------HHHHHHHHhHhcCCCeEEEEe
Q 026513          139 ERVDGVVEDLSSHKIRGISQTEKYDVVIANI-LLNP------LLQLADHIVSYAKPGAVVGIS  194 (237)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~-~~~~------~~~~l~~~~~~L~~gG~liis  194 (237)
                                       ....++||+|+++. ++++      ...+++.+.++|+|||.++++
T Consensus        91 -----------------~~~~~~fD~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~  136 (243)
T 3d2l_A           91 -----------------LELPEPVDAITILCDSLNYLQTEADVKQTFDSAARLLTDGGKLLFD  136 (243)
T ss_dssp             -----------------CCCSSCEEEEEECTTGGGGCCSHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             -----------------cCCCCCcCEEEEeCCchhhcCCHHHHHHHHHHHHHhcCCCeEEEEE
Confidence                             11236899999975 4433      456789999999999999985

>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A

Probab=99.56  E-value=4.9e-14  Score=114.83  Aligned_cols=104  Identities=18%  Similarity=0.202  Sum_probs=81.5

Q ss_pred             ccCCCeEEEEcCcchHHHHHHHHh-C-CCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccc
Q 026513           68 IKGGELFLDYGTGSGILGIAAIKF-G-AAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVV  145 (237)
Q Consensus        68 ~~~~~~vLDlG~G~G~~~~~la~~-~-~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  145 (237)
                      +.++.+|||+|||+|.++..+++. + ..+|+|+|+|+.+++.++++++.+  .    ++.++.+|+.+...        
T Consensus        71 ~~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~--~----~v~~~~~d~~~~~~--------  136 (227)
T 1g8a_A           71 IKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEER--R----NIVPILGDATKPEE--------  136 (227)
T ss_dssp             CCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSC--T----TEEEEECCTTCGGG--------
T ss_pred             CCCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhcc--C----CCEEEEccCCCcch--------
Confidence            457889999999999999999865 4 478999999999999999988754  3    37888888763110        


Q ss_pred             cccccccccCCCCCCceeEEEEeCChHHHH-HHHHHHhHhcCCCeEEEEe
Q 026513          146 EDLSSHKIRGISQTEKYDVVIANILLNPLL-QLADHIVSYAKPGAVVGIS  194 (237)
Q Consensus       146 ~~~~~~~~~~~~~~~~fD~I~~n~~~~~~~-~~l~~~~~~L~~gG~liis  194 (237)
                               .....++||+|+++.+..... .++..+.++|+|||.+++.
T Consensus       137 ---------~~~~~~~~D~v~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~  177 (227)
T 1g8a_A          137 ---------YRALVPKVDVIFEDVAQPTQAKILIDNAEVYLKRGGYGMIA  177 (227)
T ss_dssp             ---------GTTTCCCEEEEEECCCSTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             ---------hhcccCCceEEEECCCCHhHHHHHHHHHHHhcCCCCEEEEE
Confidence                     011135899999998744333 4489999999999999996

>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13

Probab=99.56  E-value=2.5e-14  Score=123.61  Aligned_cols=154  Identities=16%  Similarity=0.184  Sum_probs=102.0

Q ss_pred             HHHHHHHHHhhccCCCeEEEEcCcchHHHHHHHHh-CC-CeEEEEeCCHHHHHHHHHHHHHc-------CCCCCcceEEe
Q 026513           57 TKLCLLLLRRLIKGGELFLDYGTGSGILGIAAIKF-GA-AMSVGADIDPQAIKSAHQNAALN-------NIGPKKMKLHL  127 (237)
Q Consensus        57 ~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~la~~-~~-~~v~~vD~s~~~i~~a~~~~~~~-------~~~~~~~~v~~  127 (237)
                      ...++..+  .+.++.+|||+|||+|.++..+++. |. .+|+++|+++.+++.|++++...       ++....-++.+
T Consensus        94 ~~~~l~~l--~~~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~  171 (336)
T 2b25_A           94 INMILSMM--DINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDF  171 (336)
T ss_dssp             HHHHHHHH--TCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEE
T ss_pred             HHHHHHhc--CCCCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEE
Confidence            44444444  2568899999999999999999875 44 78999999999999999998752       22100113788


Q ss_pred             ccCccccccccccccccccccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEeccCCCCHHHHHHH
Q 026513          128 VPDRTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILSEQLPHIINR  207 (237)
Q Consensus       128 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~~~~~~~~~~~~~  207 (237)
                      ..+|+.+..                  ...++++||+|+++++...  .++..+.+.|+|||.+++.....++..++...
T Consensus       172 ~~~d~~~~~------------------~~~~~~~fD~V~~~~~~~~--~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~  231 (336)
T 2b25_A          172 IHKDISGAT------------------EDIKSLTFDAVALDMLNPH--VTLPVFYPHLKHGGVCAVYVVNITQVIELLDG  231 (336)
T ss_dssp             EESCTTCCC-------------------------EEEEEECSSSTT--TTHHHHGGGEEEEEEEEEEESSHHHHHHHHHH
T ss_pred             EECChHHcc------------------cccCCCCeeEEEECCCCHH--HHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHH
Confidence            888876311                  0112457999999876432  36788999999999999876555555666665


Q ss_pred             Hhhc---cccc--eeeecCCEEEEEEEEcc
Q 026513          208 YSEF---LEDI--LVSEMDDWTCVSGKKKR  232 (237)
Q Consensus       208 ~~~~---~~~~--~~~~~~~w~~~~~~~~~  232 (237)
                      +...   |...  .......|..+.++++.
T Consensus       232 l~~~~~~~~~~~~~~~~~~~w~~~~~~~~~  261 (336)
T 2b25_A          232 IRTCELALSCEKISEVIVRDWLVCLAKQKN  261 (336)
T ss_dssp             HHHHTCCEEEEEEECCCCCCEEECC-----
T ss_pred             HHhcCCCcccceEEEecccceEEEeecccc
Confidence            5532   2222  33456789987666543

>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A

Probab=99.56  E-value=1.8e-14  Score=121.33  Aligned_cols=108  Identities=11%  Similarity=0.050  Sum_probs=86.0

Q ss_pred             ccCCCeEEEEcCcchHHHHHHHHh--CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccc
Q 026513           68 IKGGELFLDYGTGSGILGIAAIKF--GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVV  145 (237)
Q Consensus        68 ~~~~~~vLDlG~G~G~~~~~la~~--~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  145 (237)
                      ..+|.+|||+|||+|..+..++..  +..+|+|+|+++.+++.+++++...++.+    +.++++|..+....       
T Consensus        81 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g~~~----v~~~~~D~~~~~~~-------  149 (274)
T 3ajd_A           81 PREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGVLN----TIIINADMRKYKDY-------  149 (274)
T ss_dssp             CCTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTCCS----EEEEESCHHHHHHH-------
T ss_pred             CCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhCCCc----EEEEeCChHhcchh-------
Confidence            467889999999999999998874  44789999999999999999999988874    88889987632100       


Q ss_pred             cccccccccCCCCCCceeEEEEeCChHH---------------------HHHHHHHHhHhcCCCeEEEEec
Q 026513          146 EDLSSHKIRGISQTEKYDVVIANILLNP---------------------LLQLADHIVSYAKPGAVVGISG  195 (237)
Q Consensus       146 ~~~~~~~~~~~~~~~~fD~I~~n~~~~~---------------------~~~~l~~~~~~L~~gG~liis~  195 (237)
                               .....++||+|++++|...                     ...+++.+.++|+|||.++++.
T Consensus       150 ---------~~~~~~~fD~Vl~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~st  211 (274)
T 3ajd_A          150 ---------LLKNEIFFDKILLDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKDGELVYST  211 (274)
T ss_dssp             ---------HHHTTCCEEEEEEEECCC------------HHHHTGGGTCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ---------hhhccccCCEEEEcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEE
Confidence                     0001468999999987532                     2578999999999999999974

>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A

Probab=99.56  E-value=2.7e-14  Score=116.93  Aligned_cols=108  Identities=12%  Similarity=0.102  Sum_probs=85.7

Q ss_pred             HHHHHHHHhhccCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccc
Q 026513           58 KLCLLLLRRLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASM  137 (237)
Q Consensus        58 ~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~  137 (237)
                      ..+.+.+... .++.+|||+|||+|.++..+++.+. +|+|+|+|+.+++.|++++..        .+.++++|+.+   
T Consensus        31 ~~~~~~l~~~-~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~~~--------~v~~~~~d~~~---   97 (250)
T 2p7i_A           31 PFMVRAFTPF-FRPGNLLELGSFKGDFTSRLQEHFN-DITCVEASEEAISHAQGRLKD--------GITYIHSRFED---   97 (250)
T ss_dssp             HHHHHHHGGG-CCSSCEEEESCTTSHHHHHHTTTCS-CEEEEESCHHHHHHHHHHSCS--------CEEEEESCGGG---
T ss_pred             HHHHHHHHhh-cCCCcEEEECCCCCHHHHHHHHhCC-cEEEEeCCHHHHHHHHHhhhC--------CeEEEEccHHH---
Confidence            3344444333 4677999999999999999988754 799999999999999987542        27788888763   


Q ss_pred             cccccccccccccccccCCCCCCceeEEEEeCChHHH---HHHHHHHh-HhcCCCeEEEEecc
Q 026513          138 NERVDGVVEDLSSHKIRGISQTEKYDVVIANILLNPL---LQLADHIV-SYAKPGAVVGISGI  196 (237)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~~~~---~~~l~~~~-~~L~~gG~liis~~  196 (237)
                                        ..++++||+|++..+++++   ..+++++. ++|+|||+++++..
T Consensus        98 ------------------~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~~LkpgG~l~i~~~  142 (250)
T 2p7i_A           98 ------------------AQLPRRYDNIVLTHVLEHIDDPVALLKRINDDWLAEGGRLFLVCP  142 (250)
T ss_dssp             ------------------CCCSSCEEEEEEESCGGGCSSHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred             ------------------cCcCCcccEEEEhhHHHhhcCHHHHHHHHHHHhcCCCCEEEEEcC
Confidence                              1236789999999988765   56899999 99999999999764

>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana}

Probab=99.56  E-value=2.1e-14  Score=126.17  Aligned_cols=102  Identities=26%  Similarity=0.277  Sum_probs=86.0

Q ss_pred             ccCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccc
Q 026513           68 IKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVED  147 (237)
Q Consensus        68 ~~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  147 (237)
                      ..++.+|||+|||+|.+++.+++.|..+|+|+|+| .+++.|++++..+++.+   ++.++++|+.+             
T Consensus        61 ~~~~~~VLDlGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~a~~~~~~~~~~~---~v~~~~~d~~~-------------  123 (376)
T 3r0q_C           61 HFEGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMADHARALVKANNLDH---IVEVIEGSVED-------------  123 (376)
T ss_dssp             TTTTCEEEEESCTTTHHHHHHHHTTCSEEEEEESS-TTHHHHHHHHHHTTCTT---TEEEEESCGGG-------------
T ss_pred             cCCCCEEEEeccCcCHHHHHHHhcCCCEEEEEccH-HHHHHHHHHHHHcCCCC---eEEEEECchhh-------------
Confidence            35788999999999999999999888899999999 99999999999999876   48899999863             


Q ss_pred             cccccccCCCCCCceeEEEEeCChH------HHHHHHHHHhHhcCCCeEEEEe
Q 026513          148 LSSHKIRGISQTEKYDVVIANILLN------PLLQLADHIVSYAKPGAVVGIS  194 (237)
Q Consensus       148 ~~~~~~~~~~~~~~fD~I~~n~~~~------~~~~~l~~~~~~L~~gG~liis  194 (237)
                              +...++||+|++++..+      ....++..+.++|+|||.++++
T Consensus       124 --------~~~~~~~D~Iv~~~~~~~l~~e~~~~~~l~~~~~~LkpgG~li~~  168 (376)
T 3r0q_C          124 --------ISLPEKVDVIISEWMGYFLLRESMFDSVISARDRWLKPTGVMYPS  168 (376)
T ss_dssp             --------CCCSSCEEEEEECCCBTTBTTTCTHHHHHHHHHHHEEEEEEEESS
T ss_pred             --------cCcCCcceEEEEcChhhcccchHHHHHHHHHHHhhCCCCeEEEEe
Confidence                    11237899999987532      2456889999999999999875

>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}

Probab=99.56  E-value=3.5e-14  Score=117.50  Aligned_cols=125  Identities=16%  Similarity=0.158  Sum_probs=97.5

Q ss_pred             ccCCCeEEEEcCcchHHHHHHHHh-C-CCeEEEEeCCHHHHHHHHHHHHHc-CCCCCcceEEeccCcccccccccccccc
Q 026513           68 IKGGELFLDYGTGSGILGIAAIKF-G-AAMSVGADIDPQAIKSAHQNAALN-NIGPKKMKLHLVPDRTFTASMNERVDGV  144 (237)
Q Consensus        68 ~~~~~~vLDlG~G~G~~~~~la~~-~-~~~v~~vD~s~~~i~~a~~~~~~~-~~~~~~~~v~~~~~d~~~~~~~~~~~~~  144 (237)
                      +.++.+|||+|||+|.++..+++. + ..+|+++|+++.+++.|++++..+ +..    ++.+..+|+.+.         
T Consensus        94 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g~~----~v~~~~~d~~~~---------  160 (258)
T 2pwy_A           94 LAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQVE----NVRFHLGKLEEA---------  160 (258)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCCC----CEEEEESCGGGC---------
T ss_pred             CCCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCC----CEEEEECchhhc---------
Confidence            467889999999999999999876 4 678999999999999999999887 644    388888887631         


Q ss_pred             ccccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEeccCCCCHHHHHHHHhhc-cccceee
Q 026513          145 VEDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILSEQLPHIINRYSEF-LEDILVS  218 (237)
Q Consensus       145 ~~~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~~~~~~~~~~~~~~~~~-~~~~~~~  218 (237)
                                 ..++++||+|+++++-.  ..++..+.++|+|||.+++.....+...++...+... |..++..
T Consensus       161 -----------~~~~~~~D~v~~~~~~~--~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~~gf~~~~~~  222 (258)
T 2pwy_A          161 -----------ELEEAAYDGVALDLMEP--WKVLEKAALALKPDRFLVAYLPNITQVLELVRAAEAHPFRLERVL  222 (258)
T ss_dssp             -----------CCCTTCEEEEEEESSCG--GGGHHHHHHHEEEEEEEEEEESCHHHHHHHHHHHTTTTEEEEEEE
T ss_pred             -----------CCCCCCcCEEEECCcCH--HHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCceEEEE
Confidence                       12246899999987633  3678999999999999999866555566666666544 5544443

>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*

Probab=99.56  E-value=2.9e-14  Score=122.39  Aligned_cols=142  Identities=18%  Similarity=0.182  Sum_probs=102.6

Q ss_pred             cCCCeEEEEcCcchHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHH--cC-CCCCcceEEeccCcccccccccccccc
Q 026513           69 KGGELFLDYGTGSGILGIAAIKF-GAAMSVGADIDPQAIKSAHQNAAL--NN-IGPKKMKLHLVPDRTFTASMNERVDGV  144 (237)
Q Consensus        69 ~~~~~vLDlG~G~G~~~~~la~~-~~~~v~~vD~s~~~i~~a~~~~~~--~~-~~~~~~~v~~~~~d~~~~~~~~~~~~~  144 (237)
                      +.+.+|||+|||+|.++..+++. +..+|+++|+|+.+++.|++++..  .+ +...  ++.++.+|..+..        
T Consensus        76 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~--~v~~~~~D~~~~l--------  145 (314)
T 1uir_A           76 PEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDP--RAVLVIDDARAYL--------  145 (314)
T ss_dssp             SCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCT--TEEEEESCHHHHH--------
T ss_pred             CCCCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccccCC--ceEEEEchHHHHH--------
Confidence            56689999999999999999876 567899999999999999998754  12 1111  4788899876311        


Q ss_pred             ccccccccccCCCCCCceeEEEEeCChHH----------HHHHHHHHhHhcCCCeEEEEecc-----CCCCHHHHHHHHh
Q 026513          145 VEDLSSHKIRGISQTEKYDVVIANILLNP----------LLQLADHIVSYAKPGAVVGISGI-----LSEQLPHIINRYS  209 (237)
Q Consensus       145 ~~~~~~~~~~~~~~~~~fD~I~~n~~~~~----------~~~~l~~~~~~L~~gG~liis~~-----~~~~~~~~~~~~~  209 (237)
                               ..  ..++||+|+++.+.+.          ..++++.+.+.|+|||.+++...     ..+....+...++
T Consensus       146 ---------~~--~~~~fD~Ii~d~~~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~~l~  214 (314)
T 1uir_A          146 ---------ER--TEERYDVVIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQTGMILLTHHRVHPVVHRTVR  214 (314)
T ss_dssp             ---------HH--CCCCEEEEEEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEEEEECC---CHHHHHHHHHH
T ss_pred             ---------Hh--cCCCccEEEECCCCcccccCcchhccHHHHHHHHHHhcCCCcEEEEEccCccccCHHHHHHHHHHHH
Confidence                     01  2568999999886543          36789999999999999998632     1233456666666


Q ss_pred             hccccceee------ecCCEEEEEEEEc
Q 026513          210 EFLEDILVS------EMDDWTCVSGKKK  231 (237)
Q Consensus       210 ~~~~~~~~~------~~~~w~~~~~~~~  231 (237)
                      ..|..+...      ..+.|..++++|+
T Consensus       215 ~~F~~v~~~~~~vP~~~g~~~~~~as~~  242 (314)
T 1uir_A          215 EAFRYVRSYKNHIPGFFLNFGFLLASDA  242 (314)
T ss_dssp             TTCSEEEEEEEEEGGGTEEEEEEEEESS
T ss_pred             HHCCceEEEEEecCCCCCeEEEEEEECC
Confidence            656544432      2456888888865

>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E

Probab=99.56  E-value=3.1e-14  Score=117.71  Aligned_cols=107  Identities=13%  Similarity=0.073  Sum_probs=83.9

Q ss_pred             ccCCCeEEEEcCcchHHHHHHHHhC-CCeEEEEeCCHHHHHHHHHHHHHc--------CCCCCcceEEeccCcccccccc
Q 026513           68 IKGGELFLDYGTGSGILGIAAIKFG-AAMSVGADIDPQAIKSAHQNAALN--------NIGPKKMKLHLVPDRTFTASMN  138 (237)
Q Consensus        68 ~~~~~~vLDlG~G~G~~~~~la~~~-~~~v~~vD~s~~~i~~a~~~~~~~--------~~~~~~~~v~~~~~d~~~~~~~  138 (237)
                      +.++.+|||+|||+|.+++.++..+ ..+|+|+|+|+.+++.|++++..+        ++.+    +.++.+|+.+.   
T Consensus        47 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~n----v~~~~~D~~~~---  119 (246)
T 2vdv_E           47 MTKKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQN----INVLRGNAMKF---  119 (246)
T ss_dssp             BSCCEEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTT----EEEEECCTTSC---
T ss_pred             CCCCCEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCCCc----EEEEeccHHHH---
Confidence            3467899999999999999999764 458999999999999999998876        6654    88889998631   


Q ss_pred             ccccccccccccccccCCCCCCceeEEEEeCChHHH-----------HHHHHHHhHhcCCCeEEEEec
Q 026513          139 ERVDGVVEDLSSHKIRGISQTEKYDVVIANILLNPL-----------LQLADHIVSYAKPGAVVGISG  195 (237)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~~~~-----------~~~l~~~~~~L~~gG~liis~  195 (237)
                                    +......+.+|.|+++.+-...           ..++..+.++|+|||.|++..
T Consensus       120 --------------l~~~~~~~~~d~v~~~~p~p~~k~~~~~~r~~~~~~l~~~~~~LkpgG~l~~~t  173 (246)
T 2vdv_E          120 --------------LPNFFEKGQLSKMFFCFPDPHFKQRKHKARIITNTLLSEYAYVLKEGGVVYTIT  173 (246)
T ss_dssp             --------------GGGTSCTTCEEEEEEESCCCC------CSSCCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred             --------------HHHhccccccCEEEEECCCcccccchhHHhhccHHHHHHHHHHcCCCCEEEEEe
Confidence                          1122335789999876543221           478999999999999999953

>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}

Probab=99.55  E-value=8.7e-14  Score=114.62  Aligned_cols=112  Identities=13%  Similarity=0.183  Sum_probs=88.9

Q ss_pred             cCCCeEEEEcCcchHHHHHHHHh-C-CCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccc
Q 026513           69 KGGELFLDYGTGSGILGIAAIKF-G-AAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVE  146 (237)
Q Consensus        69 ~~~~~vLDlG~G~G~~~~~la~~-~-~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  146 (237)
                      .++.+|||+|||+|..++.+++. + ..+++++|+++.+++.|++++...++.+   ++.++.+|..+..         .
T Consensus        69 ~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~---~i~~~~gda~~~l---------~  136 (237)
T 3c3y_A           69 VNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVEH---KINFIESDAMLAL---------D  136 (237)
T ss_dssp             TTCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGG---GEEEEESCHHHHH---------H
T ss_pred             hCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCC---cEEEEEcCHHHHH---------H
Confidence            45679999999999999999875 3 6789999999999999999999888754   4888899876311         0


Q ss_pred             ccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEecc
Q 026513          147 DLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGI  196 (237)
Q Consensus       147 ~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~~  196 (237)
                      .+    ...-...++||+|+++.....+..+++.+.++|+|||++++...
T Consensus       137 ~l----~~~~~~~~~fD~I~~d~~~~~~~~~l~~~~~~L~pGG~lv~d~~  182 (237)
T 3c3y_A          137 NL----LQGQESEGSYDFGFVDADKPNYIKYHERLMKLVKVGGIVAYDNT  182 (237)
T ss_dssp             HH----HHSTTCTTCEEEEEECSCGGGHHHHHHHHHHHEEEEEEEEEECT
T ss_pred             HH----HhccCCCCCcCEEEECCchHHHHHHHHHHHHhcCCCeEEEEecC
Confidence            00    00000146899999999887888899999999999999999643

>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*

Probab=99.55  E-value=2.5e-14  Score=118.71  Aligned_cols=108  Identities=12%  Similarity=0.178  Sum_probs=88.0

Q ss_pred             cCCCeEEEEcCcchHHHHHHHHh-C-CCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccc
Q 026513           69 KGGELFLDYGTGSGILGIAAIKF-G-AAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVE  146 (237)
Q Consensus        69 ~~~~~vLDlG~G~G~~~~~la~~-~-~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  146 (237)
                      .++.+|||+|||+|..++.+++. + ..+|+++|+++.+++.|++++...++.+   ++.++.+|..+..          
T Consensus        78 ~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~---~i~~~~gda~~~l----------  144 (247)
T 1sui_A           78 INAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDH---KIDFREGPALPVL----------  144 (247)
T ss_dssp             TTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGG---GEEEEESCHHHHH----------
T ss_pred             hCcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCC---CeEEEECCHHHHH----------
Confidence            45679999999999999999875 3 5789999999999999999999888754   4888899875311          


Q ss_pred             ccccccccCCC----CCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEecc
Q 026513          147 DLSSHKIRGIS----QTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGI  196 (237)
Q Consensus       147 ~~~~~~~~~~~----~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~~  196 (237)
                             ..+.    ..++||+|+++.....+..+++.+.++|+|||++++...
T Consensus       145 -------~~l~~~~~~~~~fD~V~~d~~~~~~~~~l~~~~~~LkpGG~lv~d~~  191 (247)
T 1sui_A          145 -------DEMIKDEKNHGSYDFIFVDADKDNYLNYHKRLIDLVKVGGVIGYDNT  191 (247)
T ss_dssp             -------HHHHHSGGGTTCBSEEEECSCSTTHHHHHHHHHHHBCTTCCEEEECT
T ss_pred             -------HHHHhccCCCCCEEEEEEcCchHHHHHHHHHHHHhCCCCeEEEEecC
Confidence                   0110    146899999998877778899999999999999998643

>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}

Probab=99.55  E-value=4.7e-14  Score=120.76  Aligned_cols=158  Identities=10%  Similarity=0.116  Sum_probs=108.2

Q ss_pred             CchhHHHHHHHHHh---hccCCC--eEEEEcCcchHHHHHHHH-hCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEE
Q 026513           53 EHATTKLCLLLLRR---LIKGGE--LFLDYGTGSGILGIAAIK-FGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLH  126 (237)
Q Consensus        53 ~~~~~~~~~~~l~~---~~~~~~--~vLDlG~G~G~~~~~la~-~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~  126 (237)
                      ...+.+.+...+..   ..+.++  +|||||||+|.++..+++ ++..+++++|+|+.+++.|++++....-.    +++
T Consensus        67 e~~Y~e~m~~~~~~l~~~~p~p~~~rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~vi~~Ar~~~~~~~~~----rv~  142 (317)
T 3gjy_A           67 EFEYMRWIATGARAFIDAHQDASKLRITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWFDIPRAP----RVK  142 (317)
T ss_dssp             CSHHHHHHHHHHHHHHHHHSCGGGCEEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHHHHHHHHSCCCCTT----TEE
T ss_pred             hhHHHHHHHHHHHhhcccCCCCCCCEEEEEECCcCHHHHHHHHHCCCcEEEEEECCHHHHHHHHHhccccCCC----ceE
Confidence            35566666666553   223344  999999999999999997 56668999999999999999987543222    488


Q ss_pred             eccCccccccccccccccccccccccccCCCCCCceeEEEEeCChH-----HH--HHHHHHHhHhcCCCeEEEEeccCCC
Q 026513          127 LVPDRTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLN-----PL--LQLADHIVSYAKPGAVVGISGILSE  199 (237)
Q Consensus       127 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~~-----~~--~~~l~~~~~~L~~gG~liis~~~~~  199 (237)
                      ++.+|..+..                 .. ...++||+|+++...+     ++  .++++.+.+.|+|||++++......
T Consensus       143 v~~~Da~~~l-----------------~~-~~~~~fDvIi~D~~~~~~~~~~L~t~efl~~~~r~LkpgGvlv~~~~~~~  204 (317)
T 3gjy_A          143 IRVDDARMVA-----------------ES-FTPASRDVIIRDVFAGAITPQNFTTVEFFEHCHRGLAPGGLYVANCGDHS  204 (317)
T ss_dssp             EEESCHHHHH-----------------HT-CCTTCEEEEEECCSTTSCCCGGGSBHHHHHHHHHHEEEEEEEEEEEEECT
T ss_pred             EEECcHHHHH-----------------hh-ccCCCCCEEEECCCCccccchhhhHHHHHHHHHHhcCCCcEEEEEecCCc
Confidence            8899986311                 01 1246899999976421     11  5789999999999999998754222


Q ss_pred             C---HHHHHHHHhhccccceeee------cCCEEE--EEEEEcc
Q 026513          200 Q---LPHIINRYSEFLEDILVSE------MDDWTC--VSGKKKR  232 (237)
Q Consensus       200 ~---~~~~~~~~~~~~~~~~~~~------~~~w~~--~~~~~~~  232 (237)
                      .   ...+...+++.|..+.+..      ...|..  +++++..
T Consensus       205 ~~~~~~~~~~tL~~vF~~v~~~~~~~~~~g~~~gN~Vl~As~~p  248 (317)
T 3gjy_A          205 DLRGAKSELAGMMEVFEHVAVIADPPMLKGRRYGNIILMGSDTE  248 (317)
T ss_dssp             TCHHHHHHHHHHHHHCSEEEEEECHHHHTTSSCEEEEEEEESSC
T ss_pred             chHHHHHHHHHHHHHCCceEEEEecCCCCCCcCceEEEEEECCC
Confidence            2   3456666666676665542      124544  6666544

>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}

Probab=99.55  E-value=2.6e-14  Score=114.49  Aligned_cols=104  Identities=19%  Similarity=0.197  Sum_probs=80.6

Q ss_pred             ccCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccc
Q 026513           68 IKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVED  147 (237)
Q Consensus        68 ~~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  147 (237)
                      ..++.+|||+|||+|.++..++.....+++|+|+|+.+++.|++++...+.     ++.++++|+.+.            
T Consensus        21 ~~~~~~vLDiGcG~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-----~~~~~~~d~~~~------------   83 (209)
T 2p8j_A           21 SNLDKTVLDCGAGGDLPPLSIFVEDGYKTYGIEISDLQLKKAENFSRENNF-----KLNISKGDIRKL------------   83 (209)
T ss_dssp             SSSCSEEEEESCCSSSCTHHHHHHTTCEEEEEECCHHHHHHHHHHHHHHTC-----CCCEEECCTTSC------------
T ss_pred             cCCCCEEEEECCCCCHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcCC-----ceEEEECchhhC------------
Confidence            466789999999999875444333345899999999999999999887653     266778887531            


Q ss_pred             cccccccCCCCCCceeEEEEeCChHHH-----HHHHHHHhHhcCCCeEEEEecc
Q 026513          148 LSSHKIRGISQTEKYDVVIANILLNPL-----LQLADHIVSYAKPGAVVGISGI  196 (237)
Q Consensus       148 ~~~~~~~~~~~~~~fD~I~~n~~~~~~-----~~~l~~~~~~L~~gG~liis~~  196 (237)
                              ..++++||+|+++.+++++     ..+++.+.+.|+|||.++++.+
T Consensus        84 --------~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  129 (209)
T 2p8j_A           84 --------PFKDESMSFVYSYGTIFHMRKNDVKEAIDEIKRVLKPGGLACINFL  129 (209)
T ss_dssp             --------CSCTTCEEEEEECSCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             --------CCCCCceeEEEEcChHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence                    1235789999998776543     5679999999999999999754

>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}

Probab=99.55  E-value=3e-14  Score=117.24  Aligned_cols=117  Identities=16%  Similarity=0.167  Sum_probs=92.5

Q ss_pred             ccCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccc
Q 026513           68 IKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVED  147 (237)
Q Consensus        68 ~~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  147 (237)
                      +.++.+|||+|||+|.++..+++. ..+++++|+++.+++.|++++...++..   ++.+..+|+.+.            
T Consensus        89 ~~~~~~vldiG~G~G~~~~~l~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~---~~~~~~~d~~~~------------  152 (248)
T 2yvl_A           89 LNKEKRVLEFGTGSGALLAVLSEV-AGEVWTFEAVEEFYKTAQKNLKKFNLGK---NVKFFNVDFKDA------------  152 (248)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHH-SSEEEEECSCHHHHHHHHHHHHHTTCCT---TEEEECSCTTTS------------
T ss_pred             CCCCCEEEEeCCCccHHHHHHHHh-CCEEEEEecCHHHHHHHHHHHHHcCCCC---cEEEEEcChhhc------------
Confidence            357889999999999999999988 7789999999999999999998887743   378888887631            


Q ss_pred             cccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEeccCCCCHHHHHHHHhh
Q 026513          148 LSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILSEQLPHIINRYSE  210 (237)
Q Consensus       148 ~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~~~~~~~~~~~~~~~~  210 (237)
                              ..++.+||+|+++++-  ...+++.+.++|+|||.+++.....+...++...+..
T Consensus       153 --------~~~~~~~D~v~~~~~~--~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~  205 (248)
T 2yvl_A          153 --------EVPEGIFHAAFVDVRE--PWHYLEKVHKSLMEGAPVGFLLPTANQVIKLLESIEN  205 (248)
T ss_dssp             --------CCCTTCBSEEEECSSC--GGGGHHHHHHHBCTTCEEEEEESSHHHHHHHHHHSTT
T ss_pred             --------ccCCCcccEEEECCcC--HHHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHh
Confidence                    1134689999998862  2356788999999999999986554555566555544

>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*

Probab=99.55  E-value=1.6e-13  Score=112.78  Aligned_cols=130  Identities=15%  Similarity=0.104  Sum_probs=89.7

Q ss_pred             ccCCCeEEEEcCcchHHHHHHHHh--CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccc
Q 026513           68 IKGGELFLDYGTGSGILGIAAIKF--GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVV  145 (237)
Q Consensus        68 ~~~~~~vLDlG~G~G~~~~~la~~--~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  145 (237)
                      +++|.+|||+|||+|.++..++..  +..+|+|+|+++.+++...+.+...  .+    +.++.+|...+..        
T Consensus        74 l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~r--~n----v~~i~~Da~~~~~--------  139 (232)
T 3id6_C           74 IRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRR--PN----IFPLLADARFPQS--------  139 (232)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHHC--TT----EEEEECCTTCGGG--------
T ss_pred             CCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc--CC----eEEEEcccccchh--------
Confidence            568999999999999999999865  3678999999999976555544433  23    7888898763210        


Q ss_pred             cccccccccCCCCCCceeEEEEeCChHHHHHHH-HHHhHhcCCCeEEEEeccC---------CCCHHHHHHHHhhc-ccc
Q 026513          146 EDLSSHKIRGISQTEKYDVVIANILLNPLLQLA-DHIVSYAKPGAVVGISGIL---------SEQLPHIINRYSEF-LED  214 (237)
Q Consensus       146 ~~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l-~~~~~~L~~gG~liis~~~---------~~~~~~~~~~~~~~-~~~  214 (237)
                               .....++||+|++|.+......++ ..+.+.|+|||+++++...         .+...+....+.++ |+.
T Consensus       140 ---------~~~~~~~~D~I~~d~a~~~~~~il~~~~~~~LkpGG~lvisik~~~~d~t~~~~e~~~~~~~~L~~~gf~~  210 (232)
T 3id6_C          140 ---------YKSVVENVDVLYVDIAQPDQTDIAIYNAKFFLKVNGDMLLVIKARSIDVTKDPKEIYKTEVEKLENSNFET  210 (232)
T ss_dssp             ---------TTTTCCCEEEEEECCCCTTHHHHHHHHHHHHEEEEEEEEEEEC-------CCSSSSTTHHHHHHHHTTEEE
T ss_pred             ---------hhccccceEEEEecCCChhHHHHHHHHHHHhCCCCeEEEEEEccCCcccCCCHHHHHHHHHHHHHHCCCEE
Confidence                     011146899999998875555554 4556699999999987221         11223444555543 777


Q ss_pred             ceeeec
Q 026513          215 ILVSEM  220 (237)
Q Consensus       215 ~~~~~~  220 (237)
                      ++....
T Consensus       211 ~~~~~l  216 (232)
T 3id6_C          211 IQIINL  216 (232)
T ss_dssp             EEEEEC
T ss_pred             EEEecc
Confidence            776554

>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A

Probab=99.55  E-value=2.4e-14  Score=118.62  Aligned_cols=101  Identities=18%  Similarity=0.195  Sum_probs=83.2

Q ss_pred             ccCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccc
Q 026513           68 IKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVED  147 (237)
Q Consensus        68 ~~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  147 (237)
                      +.++.+|||+|||+|.++..+++. ..+|+|+|+|+.+++.|++++ .....    ++.++.+|+.+.            
T Consensus        37 ~~~~~~vLDiG~G~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~-~~~~~----~~~~~~~d~~~~------------   98 (263)
T 2yqz_A           37 KGEEPVFLELGVGTGRIALPLIAR-GYRYIALDADAAMLEVFRQKI-AGVDR----KVQVVQADARAI------------   98 (263)
T ss_dssp             SSSCCEEEEETCTTSTTHHHHHTT-TCEEEEEESCHHHHHHHHHHT-TTSCT----TEEEEESCTTSC------------
T ss_pred             CCCCCEEEEeCCcCCHHHHHHHHC-CCEEEEEECCHHHHHHHHHHh-hccCC----ceEEEEcccccC------------
Confidence            467889999999999999999987 467999999999999999987 33333    378888887531            


Q ss_pred             cccccccCCCCCCceeEEEEeCChHHH---HHHHHHHhHhcCCCeEEEEe
Q 026513          148 LSSHKIRGISQTEKYDVVIANILLNPL---LQLADHIVSYAKPGAVVGIS  194 (237)
Q Consensus       148 ~~~~~~~~~~~~~~fD~I~~n~~~~~~---~~~l~~~~~~L~~gG~liis  194 (237)
                              ..++++||+|+++.+++++   ..++.++.++|+|||.+++.
T Consensus        99 --------~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~  140 (263)
T 2yqz_A           99 --------PLPDESVHGVIVVHLWHLVPDWPKVLAEAIRVLKPGGALLEG  140 (263)
T ss_dssp             --------CSCTTCEEEEEEESCGGGCTTHHHHHHHHHHHEEEEEEEEEE
T ss_pred             --------CCCCCCeeEEEECCchhhcCCHHHHHHHHHHHCCCCcEEEEE
Confidence                    1235789999999988765   57899999999999999997

>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13

Probab=99.55  E-value=2.8e-14  Score=119.99  Aligned_cols=123  Identities=15%  Similarity=0.152  Sum_probs=96.0

Q ss_pred             ccCCCeEEEEcCcchHHHHHHHHh-C-CCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccc
Q 026513           68 IKGGELFLDYGTGSGILGIAAIKF-G-AAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVV  145 (237)
Q Consensus        68 ~~~~~~vLDlG~G~G~~~~~la~~-~-~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  145 (237)
                      +.++.+|||+|||+|.++..+++. + ..+|+++|+++.+++.|++++...++..   ++.++.+|+.+           
T Consensus       110 ~~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~---~v~~~~~d~~~-----------  175 (277)
T 1o54_A          110 VKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIE---RVTIKVRDISE-----------  175 (277)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGG---GEEEECCCGGG-----------
T ss_pred             CCCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCC---CEEEEECCHHH-----------
Confidence            467889999999999999999876 4 6789999999999999999999887633   38888898763           


Q ss_pred             cccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEeccCCCCHHHHHHHHhhc-cccce
Q 026513          146 EDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILSEQLPHIINRYSEF-LEDIL  216 (237)
Q Consensus       146 ~~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~~~~~~~~~~~~~~~~~-~~~~~  216 (237)
                                ..+.++||+|+++++..  ..++..+.++|+|||.+++.....++..++...+... |..++
T Consensus       176 ----------~~~~~~~D~V~~~~~~~--~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~l~~~gf~~~~  235 (277)
T 1o54_A          176 ----------GFDEKDVDALFLDVPDP--WNYIDKCWEALKGGGRFATVCPTTNQVQETLKKLQELPFIRIE  235 (277)
T ss_dssp             ----------CCSCCSEEEEEECCSCG--GGTHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHHSSEEEEE
T ss_pred             ----------cccCCccCEEEECCcCH--HHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHCCCceeE
Confidence                      12346899999998643  3678889999999999999865544555666665543 54443

>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1

Probab=99.55  E-value=1.9e-14  Score=123.58  Aligned_cols=126  Identities=15%  Similarity=0.240  Sum_probs=94.6

Q ss_pred             EeCcccccCCCCchhH-HHHHHHHHhhccCCCeEEEEcCcchHHHHHHHHh-C-CCeEEEEeCCHHHHHHHHHHHHHcCC
Q 026513           42 ILNPGLAFGSGEHATT-KLCLLLLRRLIKGGELFLDYGTGSGILGIAAIKF-G-AAMSVGADIDPQAIKSAHQNAALNNI  118 (237)
Q Consensus        42 ~~~~~~~f~~g~~~~~-~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~la~~-~-~~~v~~vD~s~~~i~~a~~~~~~~~~  118 (237)
                      .+.++.+|+....+.. ..++..+  .+.++.+|||+|||+|.++..+++. + ..+|+|+|+|+.+++.|++++...++
T Consensus        48 ~l~~~~f~q~~~~~~~~~~l~~~l--~~~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~  125 (317)
T 1dl5_A           48 SYDDGEEYSTSSQPSLMALFMEWV--GLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGI  125 (317)
T ss_dssp             EEECSSCEEEECCHHHHHHHHHHT--TCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTC
T ss_pred             cccCCCcceeccCHHHHHHHHHhc--CCCCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCC
Confidence            5556655555444332 2222222  2467899999999999999999876 3 35699999999999999999998888


Q ss_pred             CCCcceEEeccCccccccccccccccccccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEecc
Q 026513          119 GPKKMKLHLVPDRTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGI  196 (237)
Q Consensus       119 ~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~~  196 (237)
                      .+    +.+..+|..+.                    ....++||+|+++.+++++.   +.+.+.|+|||.+++++.
T Consensus       126 ~~----v~~~~~d~~~~--------------------~~~~~~fD~Iv~~~~~~~~~---~~~~~~LkpgG~lvi~~~  176 (317)
T 1dl5_A          126 EN----VIFVCGDGYYG--------------------VPEFSPYDVIFVTVGVDEVP---ETWFTQLKEGGRVIVPIN  176 (317)
T ss_dssp             CS----EEEEESCGGGC--------------------CGGGCCEEEEEECSBBSCCC---HHHHHHEEEEEEEEEEBC
T ss_pred             CC----eEEEECChhhc--------------------cccCCCeEEEEEcCCHHHHH---HHHHHhcCCCcEEEEEEC
Confidence            75    78888887631                    11246899999999877654   567889999999999854

>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*

Probab=99.55  E-value=4.8e-14  Score=120.48  Aligned_cols=122  Identities=15%  Similarity=0.049  Sum_probs=88.4

Q ss_pred             cCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCC---CcceEEeccCccccccccccccccc
Q 026513           69 KGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGP---KKMKLHLVPDRTFTASMNERVDGVV  145 (237)
Q Consensus        69 ~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~---~~~~v~~~~~d~~~~~~~~~~~~~~  145 (237)
                      +++.+|||+|||+|.++..++..+..+++|+|+|+.+++.|+++....+...   ...++.++++|..+....       
T Consensus        33 ~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~-------  105 (313)
T 3bgv_A           33 KRDITVLDLGCGKGGDLLKWKKGRINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLI-------  105 (313)
T ss_dssp             --CCEEEEETCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCST-------
T ss_pred             CCCCEEEEECCCCcHHHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccccchh-------
Confidence            4678999999999999999887777889999999999999999886542100   011478889988642100       


Q ss_pred             cccccccccCCC-CCCceeEEEEeCChHHH-------HHHHHHHhHhcCCCeEEEEeccCCCCHHHHHHHH
Q 026513          146 EDLSSHKIRGIS-QTEKYDVVIANILLNPL-------LQLADHIVSYAKPGAVVGISGILSEQLPHIINRY  208 (237)
Q Consensus       146 ~~~~~~~~~~~~-~~~~fD~I~~n~~~~~~-------~~~l~~~~~~L~~gG~liis~~~~~~~~~~~~~~  208 (237)
                              ..+. +.++||+|+++..+++.       ..++.++.++|+|||.++++....   .++...+
T Consensus       106 --------~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~---~~l~~~~  165 (313)
T 3bgv_A          106 --------DKFRDPQMCFDICSCQFVCHYSFESYEQADMMLRNACERLSPGGYFIGTTPNS---FELIRRL  165 (313)
T ss_dssp             --------TTCSSTTCCEEEEEEETCGGGGGGSHHHHHHHHHHHHTTEEEEEEEEEEEECH---HHHHHHH
T ss_pred             --------hhcccCCCCEEEEEEecchhhccCCHHHHHHHHHHHHHHhCCCcEEEEecCCh---HHHHHHH
Confidence                    0111 23589999999888554       478999999999999999975433   3444443

>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}

Probab=99.55  E-value=1.8e-13  Score=112.47  Aligned_cols=120  Identities=13%  Similarity=0.118  Sum_probs=89.6

Q ss_pred             cCCCeEEEEcCcchHHHHHHHHh-C-CCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccc
Q 026513           69 KGGELFLDYGTGSGILGIAAIKF-G-AAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVE  146 (237)
Q Consensus        69 ~~~~~vLDlG~G~G~~~~~la~~-~-~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  146 (237)
                      .++.+|||+|||+|..+..+++. + ..+|+++|+++.+++.|++++...++.+   ++.++.+|..+...     .+..
T Consensus        59 ~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~---~v~~~~~d~~~~~~-----~~~~  130 (239)
T 2hnk_A           59 SGAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLEN---KIFLKLGSALETLQ-----VLID  130 (239)
T ss_dssp             HTCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGG---GEEEEESCHHHHHH-----HHHH
T ss_pred             hCcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCC---CEEEEECCHHHHHH-----HHHh
Confidence            56789999999999999999876 3 5789999999999999999999888754   47888888753110     0000


Q ss_pred             ccccccccCCCCC--CceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEecc
Q 026513          147 DLSSHKIRGISQT--EKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGI  196 (237)
Q Consensus       147 ~~~~~~~~~~~~~--~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~~  196 (237)
                      ...........+.  ++||+|+++.....+..+++.+.++|+|||++++..+
T Consensus       131 ~~~~~~~~~~f~~~~~~fD~I~~~~~~~~~~~~l~~~~~~L~pgG~lv~~~~  182 (239)
T 2hnk_A          131 SKSAPSWASDFAFGPSSIDLFFLDADKENYPNYYPLILKLLKPGGLLIADNV  182 (239)
T ss_dssp             CSSCCGGGTTTCCSTTCEEEEEECSCGGGHHHHHHHHHHHEEEEEEEEEECS
T ss_pred             hcccccccccccCCCCCcCEEEEeCCHHHHHHHHHHHHHHcCCCeEEEEEcc
Confidence            0000000011122  6899999999888888899999999999999999754

>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}

Probab=99.54  E-value=3.4e-14  Score=116.86  Aligned_cols=114  Identities=10%  Similarity=0.073  Sum_probs=85.7

Q ss_pred             HHHhhccCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccc
Q 026513           63 LLRRLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVD  142 (237)
Q Consensus        63 ~l~~~~~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~  142 (237)
                      .+...+.++.+|||+|||+|.++..+++.+. +|+|+|+|+.+++.|++++.   ..    ++.++++|+.+.....   
T Consensus        49 ~~~~~~~~~~~vLD~GcG~G~~~~~la~~~~-~v~gvD~s~~~~~~a~~~~~---~~----~~~~~~~d~~~~~~~~---  117 (245)
T 3ggd_A           49 RFELLFNPELPLIDFACGNGTQTKFLSQFFP-RVIGLDVSKSALEIAAKENT---AA----NISYRLLDGLVPEQAA---  117 (245)
T ss_dssp             HHTTTSCTTSCEEEETCTTSHHHHHHHHHSS-CEEEEESCHHHHHHHHHHSC---CT----TEEEEECCTTCHHHHH---
T ss_pred             HHhhccCCCCeEEEEcCCCCHHHHHHHHhCC-CEEEEECCHHHHHHHHHhCc---cc----CceEEECccccccccc---
Confidence            3333357788999999999999999998865 79999999999999998762   12    3788899886422110   


Q ss_pred             ccccccccccccCCCCCCceeEEEEeCChHHH-----HHHHHHHhHhcCCCeEEEEeccCCC
Q 026513          143 GVVEDLSSHKIRGISQTEKYDVVIANILLNPL-----LQLADHIVSYAKPGAVVGISGILSE  199 (237)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~fD~I~~n~~~~~~-----~~~l~~~~~~L~~gG~liis~~~~~  199 (237)
                                  .+....+||+|+++..++++     ..+++++.++|+|||++++.++...
T Consensus       118 ------------~~~~~~~~d~v~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~  167 (245)
T 3ggd_A          118 ------------QIHSEIGDANIYMRTGFHHIPVEKRELLGQSLRILLGKQGAMYLIELGTG  167 (245)
T ss_dssp             ------------HHHHHHCSCEEEEESSSTTSCGGGHHHHHHHHHHHHTTTCEEEEEEECTT
T ss_pred             ------------ccccccCccEEEEcchhhcCCHHHHHHHHHHHHHHcCCCCEEEEEeCCcc
Confidence                        00001349999999876554     4789999999999999998766543

>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*

Probab=99.54  E-value=4e-14  Score=121.89  Aligned_cols=142  Identities=14%  Similarity=0.140  Sum_probs=101.3

Q ss_pred             cCCCeEEEEcCcchHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHH--cCCCCCcceEEeccCccccccccccccccc
Q 026513           69 KGGELFLDYGTGSGILGIAAIKF-GAAMSVGADIDPQAIKSAHQNAAL--NNIGPKKMKLHLVPDRTFTASMNERVDGVV  145 (237)
Q Consensus        69 ~~~~~vLDlG~G~G~~~~~la~~-~~~~v~~vD~s~~~i~~a~~~~~~--~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  145 (237)
                      +++.+|||+|||+|.++..+++. +..+|+++|+|+.+++.|++++..  +++...  +++++.+|+.+..         
T Consensus       115 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~--~v~~~~~D~~~~l---------  183 (321)
T 2pt6_A          115 KEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDK--RVNVFIEDASKFL---------  183 (321)
T ss_dssp             SSCCEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGST--TEEEEESCHHHHH---------
T ss_pred             CCCCEEEEEcCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCC--cEEEEEccHHHHH---------
Confidence            45689999999999999999876 578999999999999999998764  222111  4788899876311         


Q ss_pred             cccccccccCCCCCCceeEEEEeCC--hH---H-H-HHHHHHHhHhcCCCeEEEEecc---C-CCCHHHHHHHHhhcccc
Q 026513          146 EDLSSHKIRGISQTEKYDVVIANIL--LN---P-L-LQLADHIVSYAKPGAVVGISGI---L-SEQLPHIINRYSEFLED  214 (237)
Q Consensus       146 ~~~~~~~~~~~~~~~~fD~I~~n~~--~~---~-~-~~~l~~~~~~L~~gG~liis~~---~-~~~~~~~~~~~~~~~~~  214 (237)
                              ..  ..++||+|++|++  ..   . + .++++.+.+.|+|||++++...   . .+....+...+++.|..
T Consensus       184 --------~~--~~~~fDvIi~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~F~~  253 (321)
T 2pt6_A          184 --------EN--VTNTYDVIIVDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQCESLWIHVGTIKNMIGYAKKLFKK  253 (321)
T ss_dssp             --------HH--CCSCEEEEEEECCCSSSGGGGGSSHHHHHHHHHHEEEEEEEEEEECCTTTCHHHHHHHHHHHHTTCSE
T ss_pred             --------hh--cCCCceEEEECCcCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcCCcccCHHHHHHHHHHHHHHCCC
Confidence                    01  1468999999874  11   1 1 6789999999999999999522   1 12344555666655555


Q ss_pred             ceeee-------cCCEEEEEEEEc
Q 026513          215 ILVSE-------MDDWTCVSGKKK  231 (237)
Q Consensus       215 ~~~~~-------~~~w~~~~~~~~  231 (237)
                      +....       .|.|..++++|.
T Consensus       254 v~~~~~~vp~~~~g~w~f~~as~~  277 (321)
T 2pt6_A          254 VEYANISIPTYPCGCIGILCCSKT  277 (321)
T ss_dssp             EEEEEEECTTSGGGEEEEEEEESS
T ss_pred             eEEEEEEeccccCceEEEEEeeCC
Confidence            44322       367988888864

>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}

Probab=99.54  E-value=1.2e-13  Score=113.41  Aligned_cols=108  Identities=14%  Similarity=0.196  Sum_probs=87.9

Q ss_pred             cCCCeEEEEcCcchHHHHHHHHh-C-CCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccc
Q 026513           69 KGGELFLDYGTGSGILGIAAIKF-G-AAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVE  146 (237)
Q Consensus        69 ~~~~~vLDlG~G~G~~~~~la~~-~-~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  146 (237)
                      .++.+|||+|||+|..+..++.. + ..+|+++|+++.+++.|++++...++.+   ++.++.+|..+..          
T Consensus        71 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~---~i~~~~~d~~~~l----------  137 (232)
T 3cbg_A           71 TGAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAE---KISLRLGPALATL----------  137 (232)
T ss_dssp             HTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGG---GEEEEESCHHHHH----------
T ss_pred             cCCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCC---cEEEEEcCHHHHH----------
Confidence            45779999999999999999875 3 5689999999999999999998888754   4888888875310          


Q ss_pred             ccccccccCC-CCC--CceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEecc
Q 026513          147 DLSSHKIRGI-SQT--EKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGI  196 (237)
Q Consensus       147 ~~~~~~~~~~-~~~--~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~~  196 (237)
                             ..+ ..+  ++||+|+++.+...+..+++.+.++|+|||++++...
T Consensus       138 -------~~l~~~~~~~~fD~V~~d~~~~~~~~~l~~~~~~LkpgG~lv~~~~  183 (232)
T 3cbg_A          138 -------EQLTQGKPLPEFDLIFIDADKRNYPRYYEIGLNLLRRGGLMVIDNV  183 (232)
T ss_dssp             -------HHHHTSSSCCCEEEEEECSCGGGHHHHHHHHHHTEEEEEEEEEECT
T ss_pred             -------HHHHhcCCCCCcCEEEECCCHHHHHHHHHHHHHHcCCCeEEEEeCC
Confidence                   011 112  6899999999877788899999999999999999744

>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13

Probab=99.54  E-value=4.9e-14  Score=118.30  Aligned_cols=117  Identities=18%  Similarity=0.206  Sum_probs=93.6

Q ss_pred             ccCCCeEEEEcCcchHHHHHHHHh--CCCeEEEEeCCHHHHHHHHHHHHHc-C--CCCCcceEEeccCcccccccccccc
Q 026513           68 IKGGELFLDYGTGSGILGIAAIKF--GAAMSVGADIDPQAIKSAHQNAALN-N--IGPKKMKLHLVPDRTFTASMNERVD  142 (237)
Q Consensus        68 ~~~~~~vLDlG~G~G~~~~~la~~--~~~~v~~vD~s~~~i~~a~~~~~~~-~--~~~~~~~v~~~~~d~~~~~~~~~~~  142 (237)
                      +.++.+|||+|||+|.++..+++.  +..+|+++|+++.+++.|++++... +  ..+    +.++.+|+.+.       
T Consensus        97 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~----v~~~~~d~~~~-------  165 (280)
T 1i9g_A           97 IFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDN----WRLVVSDLADS-------  165 (280)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTT----EEEECSCGGGC-------
T ss_pred             CCCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCc----EEEEECchHhc-------
Confidence            567889999999999999999874  3678999999999999999999877 5  333    88889987631       


Q ss_pred             ccccccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEeccCCCCHHHHHHHHhh
Q 026513          143 GVVEDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILSEQLPHIINRYSE  210 (237)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~~~~~~~~~~~~~~~~  210 (237)
                                   ..++++||+|+++.+-.  ..++..+.++|+|||.+++.....+...++...+..
T Consensus       166 -------------~~~~~~~D~v~~~~~~~--~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~l~~  218 (280)
T 1i9g_A          166 -------------ELPDGSVDRAVLDMLAP--WEVLDAVSRLLVAGGVLMVYVATVTQLSRIVEALRA  218 (280)
T ss_dssp             -------------CCCTTCEEEEEEESSCG--GGGHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHH
T ss_pred             -------------CCCCCceeEEEECCcCH--HHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHh
Confidence                         12256899999988632  367899999999999999987665666666666664

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}

Probab=99.54  E-value=3.3e-14  Score=116.45  Aligned_cols=100  Identities=18%  Similarity=0.233  Sum_probs=82.2

Q ss_pred             cCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccccc
Q 026513           69 KGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDL  148 (237)
Q Consensus        69 ~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~  148 (237)
                      .++.+|||+|||+|.++..+++.+..+++|+|+|+.+++.|+++....       ++.++.+|+.+.             
T Consensus        42 ~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~-------~~~~~~~d~~~~-------------  101 (243)
T 3bkw_A           42 VGGLRIVDLGCGFGWFCRWAHEHGASYVLGLDLSEKMLARARAAGPDT-------GITYERADLDKL-------------  101 (243)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHTSCSS-------SEEEEECCGGGC-------------
T ss_pred             cCCCEEEEEcCcCCHHHHHHHHCCCCeEEEEcCCHHHHHHHHHhcccC-------CceEEEcChhhc-------------
Confidence            367899999999999999999887668999999999999999875432       277888887631             


Q ss_pred             ccccccCCCCCCceeEEEEeCChHHH---HHHHHHHhHhcCCCeEEEEec
Q 026513          149 SSHKIRGISQTEKYDVVIANILLNPL---LQLADHIVSYAKPGAVVGISG  195 (237)
Q Consensus       149 ~~~~~~~~~~~~~fD~I~~n~~~~~~---~~~l~~~~~~L~~gG~liis~  195 (237)
                             ..+.++||+|+++.++++.   ..+++.+.++|+|||.++++.
T Consensus       102 -------~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~  144 (243)
T 3bkw_A          102 -------HLPQDSFDLAYSSLALHYVEDVARLFRTVHQALSPGGHFVFST  144 (243)
T ss_dssp             -------CCCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             -------cCCCCCceEEEEeccccccchHHHHHHHHHHhcCcCcEEEEEe
Confidence                   1235789999999887664   578999999999999999964

>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}

Probab=99.54  E-value=6.4e-14  Score=115.04  Aligned_cols=104  Identities=12%  Similarity=0.109  Sum_probs=82.7

Q ss_pred             ccCCCeEEEEcCcchHHHHHHHHh--CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccc
Q 026513           68 IKGGELFLDYGTGSGILGIAAIKF--GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVV  145 (237)
Q Consensus        68 ~~~~~~vLDlG~G~G~~~~~la~~--~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  145 (237)
                      ++||.+|||+|||+|.++..+++.  +..+|+|+|+++.+++.+++++...+  |    +..+.+|...+..        
T Consensus        75 ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~~--n----i~~V~~d~~~p~~--------  140 (233)
T 4df3_A           75 VKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDRR--N----IFPILGDARFPEK--------  140 (233)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTCT--T----EEEEESCTTCGGG--------
T ss_pred             CCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhhc--C----eeEEEEeccCccc--------
Confidence            689999999999999999999975  46789999999999999998876543  3    6677777653221        


Q ss_pred             cccccccccCCCCCCceeEEEEeCChHHH-HHHHHHHhHhcCCCeEEEEe
Q 026513          146 EDLSSHKIRGISQTEKYDVVIANILLNPL-LQLADHIVSYAKPGAVVGIS  194 (237)
Q Consensus       146 ~~~~~~~~~~~~~~~~fD~I~~n~~~~~~-~~~l~~~~~~L~~gG~liis  194 (237)
                               .......+|+|+++.+.+.. ..++.++.+.|||||+++++
T Consensus       141 ---------~~~~~~~vDvVf~d~~~~~~~~~~l~~~~r~LKpGG~lvI~  181 (233)
T 4df3_A          141 ---------YRHLVEGVDGLYADVAQPEQAAIVVRNARFFLRDGGYMLMA  181 (233)
T ss_dssp             ---------GTTTCCCEEEEEECCCCTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             ---------cccccceEEEEEEeccCChhHHHHHHHHHHhccCCCEEEEE
Confidence                     11224689999998876543 46789999999999999986

>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0

Probab=99.54  E-value=8.5e-14  Score=111.12  Aligned_cols=125  Identities=14%  Similarity=0.252  Sum_probs=89.8

Q ss_pred             ccCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccc
Q 026513           68 IKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVED  147 (237)
Q Consensus        68 ~~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  147 (237)
                      ++++.+|||+|||+|.++..+++. ..+|+|+|+++..           .+.+    +.++++|+.+....+.+.+.+..
T Consensus        23 ~~~g~~VLDlG~G~G~~s~~la~~-~~~V~gvD~~~~~-----------~~~~----v~~~~~D~~~~~~~~~~~~~~~~   86 (191)
T 3dou_A           23 VRKGDAVIEIGSSPGGWTQVLNSL-ARKIISIDLQEME-----------EIAG----VRFIRCDIFKETIFDDIDRALRE   86 (191)
T ss_dssp             SCTTCEEEEESCTTCHHHHHHTTT-CSEEEEEESSCCC-----------CCTT----CEEEECCTTSSSHHHHHHHHHHH
T ss_pred             CCCCCEEEEEeecCCHHHHHHHHc-CCcEEEEeccccc-----------cCCC----eEEEEccccCHHHHHHHHHHhhc
Confidence            578999999999999999999988 6789999999842           2232    77889998743211100000000


Q ss_pred             cccccccCCCCCCceeEEEEeCCh--------H------HHHHHHHHHhHhcCCCeEEEEeccCCCCHHHHHHHHhhccc
Q 026513          148 LSSHKIRGISQTEKYDVVIANILL--------N------PLLQLADHIVSYAKPGAVVGISGILSEQLPHIINRYSEFLE  213 (237)
Q Consensus       148 ~~~~~~~~~~~~~~fD~I~~n~~~--------~------~~~~~l~~~~~~L~~gG~liis~~~~~~~~~~~~~~~~~~~  213 (237)
                              . ..++||+|++|++.        .      ....++..+.++|+|||.+++..+......++...+...|.
T Consensus        87 --------~-~~~~~D~Vlsd~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~lv~k~~~~~~~~~~~~~l~~~F~  157 (191)
T 3dou_A           87 --------E-GIEKVDDVVSDAMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVLLKQFQGDMTNDFIAIWRKNFS  157 (191)
T ss_dssp             --------H-TCSSEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECSTHHHHHHHHHGGGEE
T ss_pred             --------c-cCCcceEEecCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEcCCCCHHHHHHHHHHhcC
Confidence                    0 01489999998752        1      12356788899999999999988888878889998888776


Q ss_pred             ccee
Q 026513          214 DILV  217 (237)
Q Consensus       214 ~~~~  217 (237)
                      .+.+
T Consensus       158 ~v~~  161 (191)
T 3dou_A          158 SYKI  161 (191)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            6655

>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1

Probab=99.54  E-value=1.1e-13  Score=112.67  Aligned_cols=108  Identities=14%  Similarity=0.160  Sum_probs=88.4

Q ss_pred             cCCCeEEEEcCcchHHHHHHHHh-C-CCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccc
Q 026513           69 KGGELFLDYGTGSGILGIAAIKF-G-AAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVE  146 (237)
Q Consensus        69 ~~~~~vLDlG~G~G~~~~~la~~-~-~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  146 (237)
                      .++.+|||+|||+|..++.+++. + ..+|+++|+++.+++.|++++...++..   ++.++.+|..+..          
T Consensus        68 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~---~i~~~~~d~~~~~----------  134 (229)
T 2avd_A           68 IQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEH---KIDLRLKPALETL----------  134 (229)
T ss_dssp             TTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTT---TEEEEESCHHHHH----------
T ss_pred             cCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCC---eEEEEEcCHHHHH----------
Confidence            56789999999999999999875 3 6789999999999999999999888753   4888889875311          


Q ss_pred             ccccccccCCCC---CCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEecc
Q 026513          147 DLSSHKIRGISQ---TEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGI  196 (237)
Q Consensus       147 ~~~~~~~~~~~~---~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~~  196 (237)
                             ..+..   .++||+|+++++...+..+++.+.++|+|||.+++...
T Consensus       135 -------~~~~~~~~~~~~D~v~~d~~~~~~~~~l~~~~~~L~pgG~lv~~~~  180 (229)
T 2avd_A          135 -------DELLAAGEAGTFDVAVVDADKENCSAYYERCLQLLRPGGILAVLRV  180 (229)
T ss_dssp             -------HHHHHTTCTTCEEEEEECSCSTTHHHHHHHHHHHEEEEEEEEEECC
T ss_pred             -------HHHHhcCCCCCccEEEECCCHHHHHHHHHHHHHHcCCCeEEEEECC
Confidence                   01100   16899999999887778899999999999999999654

>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*

Probab=99.54  E-value=1.9e-13  Score=119.94  Aligned_cols=136  Identities=18%  Similarity=0.089  Sum_probs=96.4

Q ss_pred             ccCCCeEEEEcCcchHHHHHHHHhCC-CeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccc
Q 026513           68 IKGGELFLDYGTGSGILGIAAIKFGA-AMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVE  146 (237)
Q Consensus        68 ~~~~~~vLDlG~G~G~~~~~la~~~~-~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  146 (237)
                      ..++.+|||+|||+|.+++.++..+. .+|+|+|+|+.+++.|++|+..+++..   .+.+.++|+.+..          
T Consensus       215 ~~~~~~vLD~gCGsG~~~i~~a~~~~~~~v~g~Dis~~~l~~A~~n~~~~gl~~---~i~~~~~D~~~~~----------  281 (373)
T 3tm4_A          215 ELDGGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAEMNALAAGVLD---KIKFIQGDATQLS----------  281 (373)
T ss_dssp             TCCSCCEEETTCTTCHHHHHHHHTTCCSCEEEEESCHHHHHHHHHHHHHTTCGG---GCEEEECCGGGGG----------
T ss_pred             cCCCCEEEEccCcCcHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCCCC---ceEEEECChhhCC----------
Confidence            56788999999999999999998754 489999999999999999999998843   3788899987421          


Q ss_pred             ccccccccCCCCCCceeEEEEeCChH-----------HHHHHHHHHhHhcCCCeEEEEeccCCCCHHHHHHHHhh-cccc
Q 026513          147 DLSSHKIRGISQTEKYDVVIANILLN-----------PLLQLADHIVSYAKPGAVVGISGILSEQLPHIINRYSE-FLED  214 (237)
Q Consensus       147 ~~~~~~~~~~~~~~~fD~I~~n~~~~-----------~~~~~l~~~~~~L~~gG~liis~~~~~~~~~~~~~~~~-~~~~  214 (237)
                                .+.++||+|++|||+.           .+..+++.+.+.| +|+.+++++    +...+...+.. .|..
T Consensus       282 ----------~~~~~fD~Ii~npPyg~r~~~~~~~~~ly~~~~~~l~r~l-~g~~~~i~~----~~~~~~~~~~~~G~~~  346 (373)
T 3tm4_A          282 ----------QYVDSVDFAISNLPYGLKIGKKSMIPDLYMKFFNELAKVL-EKRGVFITT----EKKAIEEAIAENGFEI  346 (373)
T ss_dssp             ----------GTCSCEEEEEEECCCC------CCHHHHHHHHHHHHHHHE-EEEEEEEES----CHHHHHHHHHHTTEEE
T ss_pred             ----------cccCCcCEEEECCCCCcccCcchhHHHHHHHHHHHHHHHc-CCeEEEEEC----CHHHHHHHHHHcCCEE
Confidence                      1246899999999942           2356788888888 444444433    44445555543 2333


Q ss_pred             c--eeeecCCEEEEEEEEc
Q 026513          215 I--LVSEMDDWTCVSGKKK  231 (237)
Q Consensus       215 ~--~~~~~~~w~~~~~~~~  231 (237)
                      .  .....|...+-.++.+
T Consensus       347 ~~~~~~~nG~l~~~~~~~~  365 (373)
T 3tm4_A          347 IHHRVIGHGGLMVHLYVVK  365 (373)
T ss_dssp             EEEEEEEETTEEEEEEEEE
T ss_pred             EEEEEEEcCCEEEEEEecc
Confidence            2  3345566555444433

>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=99.54  E-value=1.4e-13  Score=113.47  Aligned_cols=99  Identities=21%  Similarity=0.324  Sum_probs=80.7

Q ss_pred             cCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccccc
Q 026513           69 KGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDL  148 (237)
Q Consensus        69 ~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~  148 (237)
                      .++.+|||+|||+|.++..+++.+ .+|+|+|+|+.+++.|++++...+..     +.++++|+.+              
T Consensus        40 ~~~~~vLDlGcG~G~~~~~l~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~-----v~~~~~d~~~--------------   99 (252)
T 1wzn_A           40 REVRRVLDLACGTGIPTLELAERG-YEVVGLDLHEEMLRVARRKAKERNLK-----IEFLQGDVLE--------------   99 (252)
T ss_dssp             SCCCEEEEETCTTCHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHTTCC-----CEEEESCGGG--------------
T ss_pred             cCCCEEEEeCCCCCHHHHHHHHCC-CeEEEEECCHHHHHHHHHHHHhcCCc-----eEEEECChhh--------------
Confidence            467899999999999999999885 47999999999999999998877652     7788888763              


Q ss_pred             ccccccCCCCCCceeEEEEeCCh------HHHHHHHHHHhHhcCCCeEEEEe
Q 026513          149 SSHKIRGISQTEKYDVVIANILL------NPLLQLADHIVSYAKPGAVVGIS  194 (237)
Q Consensus       149 ~~~~~~~~~~~~~fD~I~~n~~~------~~~~~~l~~~~~~L~~gG~liis  194 (237)
                             .....+||+|++....      .....+++.+.++|+|||.+++.
T Consensus       100 -------~~~~~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~  144 (252)
T 1wzn_A          100 -------IAFKNEFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITD  144 (252)
T ss_dssp             -------CCCCSCEEEEEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             -------cccCCCccEEEEcCCchhcCCHHHHHHHHHHHHHHcCCCeEEEEe
Confidence                   1124689999986432      23467899999999999999985

>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*

Probab=99.54  E-value=3.5e-14  Score=119.88  Aligned_cols=109  Identities=19%  Similarity=0.222  Sum_probs=82.5

Q ss_pred             cCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccccc
Q 026513           69 KGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDL  148 (237)
Q Consensus        69 ~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~  148 (237)
                      .++.+|||+|||+|.++..++..+. +|+|+|+|+.+++.|++++...+......++.+..+|+.+..            
T Consensus        56 ~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~------------  122 (293)
T 3thr_A           56 HGCHRVLDVACGTGVDSIMLVEEGF-SVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLD------------  122 (293)
T ss_dssp             TTCCEEEETTCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHH------------
T ss_pred             cCCCEEEEecCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHhhhhcccccccceeeEeecChhhCc------------
Confidence            4678999999999999999998865 899999999999999998755443221123566677765311            


Q ss_pred             ccccccCCCCCCceeEEEEe-CChHH----------HHHHHHHHhHhcCCCeEEEEec
Q 026513          149 SSHKIRGISQTEKYDVVIAN-ILLNP----------LLQLADHIVSYAKPGAVVGISG  195 (237)
Q Consensus       149 ~~~~~~~~~~~~~fD~I~~n-~~~~~----------~~~~l~~~~~~L~~gG~liis~  195 (237)
                           ..+.++++||+|+|+ .++++          ...+++++.++|+|||+++++.
T Consensus       123 -----~~~~~~~~fD~V~~~g~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  175 (293)
T 3thr_A          123 -----KDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDH  175 (293)
T ss_dssp             -----HHSCCTTCEEEEEECTTCGGGSCCSSSSSHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             -----cccccCCCeEEEEEcChHHhhcCccccCHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence                 011236799999997 56543          4568999999999999999974

>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*

Probab=99.53  E-value=2.2e-14  Score=124.88  Aligned_cols=103  Identities=19%  Similarity=0.258  Sum_probs=86.1

Q ss_pred             ccCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccc
Q 026513           68 IKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVED  147 (237)
Q Consensus        68 ~~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  147 (237)
                      +.++.+|||+|||+|.++..+++.|..+|+|+|+|+ +++.|++++..+++.+   ++.++.+|+.+.            
T Consensus        64 ~~~~~~VLDvGcG~G~~~~~la~~g~~~v~gvD~s~-~l~~a~~~~~~~~~~~---~v~~~~~d~~~~------------  127 (349)
T 3q7e_A           64 LFKDKVVLDVGSGTGILCMFAAKAGARKVIGIECSS-ISDYAVKIVKANKLDH---VVTIIKGKVEEV------------  127 (349)
T ss_dssp             HHTTCEEEEESCTTSHHHHHHHHTTCSEEEEEECST-HHHHHHHHHHHTTCTT---TEEEEESCTTTC------------
T ss_pred             cCCCCEEEEEeccchHHHHHHHHCCCCEEEEECcHH-HHHHHHHHHHHcCCCC---cEEEEECcHHHc------------
Confidence            457889999999999999999998888999999995 9999999999998876   488999998631            


Q ss_pred             cccccccCCCCCCceeEEEEeCCh------HHHHHHHHHHhHhcCCCeEEEEe
Q 026513          148 LSSHKIRGISQTEKYDVVIANILL------NPLLQLADHIVSYAKPGAVVGIS  194 (237)
Q Consensus       148 ~~~~~~~~~~~~~~fD~I~~n~~~------~~~~~~l~~~~~~L~~gG~liis  194 (237)
                              ..+.++||+|+++++.      .....++..+.++|+|||.++.+
T Consensus       128 --------~~~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~  172 (349)
T 3q7e_A          128 --------ELPVEKVDIIISEWMGYCLFYESMLNTVLHARDKWLAPDGLIFPD  172 (349)
T ss_dssp             --------CCSSSCEEEEEECCCBBTBTBTCCHHHHHHHHHHHEEEEEEEESC
T ss_pred             --------cCCCCceEEEEEccccccccCchhHHHHHHHHHHhCCCCCEEccc
Confidence                    1235799999998752      23457888899999999998753

>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}

Probab=99.53  E-value=7.8e-14  Score=116.59  Aligned_cols=105  Identities=17%  Similarity=0.105  Sum_probs=78.6

Q ss_pred             ccCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccc
Q 026513           68 IKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVED  147 (237)
Q Consensus        68 ~~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  147 (237)
                      +.++.+|||+|||+|.++..+++.+ .+|+|+|+|+.|++.|++++..+.     +...+...+...             
T Consensus        43 l~~g~~VLDlGcGtG~~a~~La~~g-~~V~gvD~S~~ml~~Ar~~~~~~~-----v~~~~~~~~~~~-------------  103 (261)
T 3iv6_A           43 IVPGSTVAVIGASTRFLIEKALERG-ASVTVFDFSQRMCDDLAEALADRC-----VTIDLLDITAEI-------------  103 (261)
T ss_dssp             CCTTCEEEEECTTCHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHTSSSC-----CEEEECCTTSCC-------------
T ss_pred             CCCcCEEEEEeCcchHHHHHHHhcC-CEEEEEECCHHHHHHHHHHHHhcc-----ceeeeeeccccc-------------
Confidence            4678899999999999999999885 579999999999999999875441     123332222200             


Q ss_pred             cccccccCCCCCCceeEEEEeCChHH-----HHHHHHHHhHhcCCCeEEEEeccCCC
Q 026513          148 LSSHKIRGISQTEKYDVVIANILLNP-----LLQLADHIVSYAKPGAVVGISGILSE  199 (237)
Q Consensus       148 ~~~~~~~~~~~~~~fD~I~~n~~~~~-----~~~~l~~~~~~L~~gG~liis~~~~~  199 (237)
                             .....++||+|+++.++++     ....+..+.++| |||.+++++....
T Consensus       104 -------~~~~~~~fD~Vv~~~~l~~~~~~~~~~~l~~l~~lL-PGG~l~lS~~~g~  152 (261)
T 3iv6_A          104 -------PKELAGHFDFVLNDRLINRFTTEEARRACLGMLSLV-GSGTVRASVKLGF  152 (261)
T ss_dssp             -------CGGGTTCCSEEEEESCGGGSCHHHHHHHHHHHHHHH-TTSEEEEEEEBSC
T ss_pred             -------ccccCCCccEEEEhhhhHhCCHHHHHHHHHHHHHhC-cCcEEEEEeccCc
Confidence                   0011468999999988754     346789999999 9999999966543

>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}

Probab=99.53  E-value=2.4e-14  Score=116.52  Aligned_cols=116  Identities=16%  Similarity=0.204  Sum_probs=87.9

Q ss_pred             HHHHHHHHhhccCCCeEEEEcCcchHHHHHHHHhCC------CeEEEEeCCHHHHHHHHHHHHHcC-----CCCCcceEE
Q 026513           58 KLCLLLLRRLIKGGELFLDYGTGSGILGIAAIKFGA------AMSVGADIDPQAIKSAHQNAALNN-----IGPKKMKLH  126 (237)
Q Consensus        58 ~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~la~~~~------~~v~~vD~s~~~i~~a~~~~~~~~-----~~~~~~~v~  126 (237)
                      ..+++.+...+.++.+|||+|||+|.++..+++...      .+|+++|+++.+++.|++++...+     ..+    +.
T Consensus        68 ~~~~~~l~~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~----v~  143 (227)
T 2pbf_A           68 ALSLKRLINVLKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDN----FK  143 (227)
T ss_dssp             HHHHHHHTTTSCTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTT----EE
T ss_pred             HHHHHHHHhhCCCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCC----EE
Confidence            344455443457889999999999999999987633      589999999999999999998877     343    78


Q ss_pred             eccCccccccccccccccccccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEecc
Q 026513          127 LVPDRTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGI  196 (237)
Q Consensus       127 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~~  196 (237)
                      ++.+|..+....                .....++||+|+++.+.+.   +++.+.+.|+|||++++...
T Consensus       144 ~~~~d~~~~~~~----------------~~~~~~~fD~I~~~~~~~~---~~~~~~~~LkpgG~lv~~~~  194 (227)
T 2pbf_A          144 IIHKNIYQVNEE----------------EKKELGLFDAIHVGASASE---LPEILVDLLAENGKLIIPIE  194 (227)
T ss_dssp             EEECCGGGCCHH----------------HHHHHCCEEEEEECSBBSS---CCHHHHHHEEEEEEEEEEEE
T ss_pred             EEECChHhcccc----------------cCccCCCcCEEEECCchHH---HHHHHHHhcCCCcEEEEEEc
Confidence            888887631100                0012468999999987764   45778999999999999743

>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*

Probab=99.53  E-value=8.1e-14  Score=120.86  Aligned_cols=102  Identities=27%  Similarity=0.323  Sum_probs=84.1

Q ss_pred             ccCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccc
Q 026513           68 IKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVED  147 (237)
Q Consensus        68 ~~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  147 (237)
                      ..++.+|||+|||+|.++..+++.|..+|+|+|+|+ +++.|++++..+++..   ++.++.+|+.+.            
T Consensus        62 ~~~~~~VLDiGcGtG~ls~~la~~g~~~v~gvD~s~-~~~~a~~~~~~~~~~~---~i~~~~~d~~~~------------  125 (340)
T 2fyt_A           62 IFKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSE-ILYQAMDIIRLNKLED---TITLIKGKIEEV------------  125 (340)
T ss_dssp             GTTTCEEEEETCTTSHHHHHHHHTTCSEEEEEESST-HHHHHHHHHHHTTCTT---TEEEEESCTTTS------------
T ss_pred             hcCCCEEEEeeccCcHHHHHHHHcCCCEEEEEChHH-HHHHHHHHHHHcCCCC---cEEEEEeeHHHh------------
Confidence            467889999999999999999988877999999997 9999999999988854   488889987631            


Q ss_pred             cccccccCCCCCCceeEEEEeCC---h---HHHHHHHHHHhHhcCCCeEEEE
Q 026513          148 LSSHKIRGISQTEKYDVVIANIL---L---NPLLQLADHIVSYAKPGAVVGI  193 (237)
Q Consensus       148 ~~~~~~~~~~~~~~fD~I~~n~~---~---~~~~~~l~~~~~~L~~gG~lii  193 (237)
                              ..+.++||+|+++..   +   .....++..+.++|+|||.++.
T Consensus       126 --------~~~~~~~D~Ivs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip  169 (340)
T 2fyt_A          126 --------HLPVEKVDVIISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVYP  169 (340)
T ss_dssp             --------CCSCSCEEEEEECCCBTTBTTTCHHHHHHHHHHHHEEEEEEEES
T ss_pred             --------cCCCCcEEEEEEcCchhhccCHHHHHHHHHHHHhhcCCCcEEEc
Confidence                    122478999999873   2   2345788999999999999983

>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*

Probab=99.53  E-value=6.2e-14  Score=123.31  Aligned_cols=110  Identities=15%  Similarity=0.143  Sum_probs=83.8

Q ss_pred             ccCCCeEEEEcCcchHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHH-------HHcCCCCCcceEEeccCccccccccc
Q 026513           68 IKGGELFLDYGTGSGILGIAAIKF-GAAMSVGADIDPQAIKSAHQNA-------ALNNIGPKKMKLHLVPDRTFTASMNE  139 (237)
Q Consensus        68 ~~~~~~vLDlG~G~G~~~~~la~~-~~~~v~~vD~s~~~i~~a~~~~-------~~~~~~~~~~~v~~~~~d~~~~~~~~  139 (237)
                      +.++.+|||||||+|.+++.++.. +..+|+|+|+++.+++.|++++       ...++...  ++.++++|+.+....+
T Consensus       171 l~~gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~--rVefi~GD~~~lp~~d  248 (438)
T 3uwp_A          171 MTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHA--EYTLERGDFLSEEWRE  248 (438)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCC--EEEEEECCTTSHHHHH
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCC--CeEEEECcccCCcccc
Confidence            578899999999999999998864 6667999999999999998865       34454211  5899999987432110


Q ss_pred             cccccccccccccccCCCCCCceeEEEEeCCh--HHHHHHHHHHhHhcCCCeEEEEeccC
Q 026513          140 RVDGVVEDLSSHKIRGISQTEKYDVVIANILL--NPLLQLADHIVSYAKPGAVVGISGIL  197 (237)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~--~~~~~~l~~~~~~L~~gG~liis~~~  197 (237)
                                      .  -..||+|++|.++  ......+.++.+.|||||+|+++..+
T Consensus       249 ----------------~--~~~aDVVf~Nn~~F~pdl~~aL~Ei~RvLKPGGrIVssE~f  290 (438)
T 3uwp_A          249 ----------------R--IANTSVIFVNNFAFGPEVDHQLKERFANMKEGGRIVSSKPF  290 (438)
T ss_dssp             ----------------H--HHTCSEEEECCTTCCHHHHHHHHHHHTTSCTTCEEEESSCS
T ss_pred             ----------------c--cCCccEEEEcccccCchHHHHHHHHHHcCCCCcEEEEeecc
Confidence                            0  0369999998874  33455678889999999999997543

>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}

Probab=99.53  E-value=5e-14  Score=115.70  Aligned_cols=99  Identities=22%  Similarity=0.223  Sum_probs=79.2

Q ss_pred             ccCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccc
Q 026513           68 IKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVED  147 (237)
Q Consensus        68 ~~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  147 (237)
                      ++++.+|||+|||+|.++..+++.+. +|+|+|+|+.+++.|+++            +.++.+|..+.            
T Consensus        39 ~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~------------~~~~~~d~~~~------------   93 (240)
T 3dli_A           39 FKGCRRVLDIGCGRGEFLELCKEEGI-ESIGVDINEDMIKFCEGK------------FNVVKSDAIEY------------   93 (240)
T ss_dssp             TTTCSCEEEETCTTTHHHHHHHHHTC-CEEEECSCHHHHHHHHTT------------SEEECSCHHHH------------
T ss_pred             hcCCCeEEEEeCCCCHHHHHHHhCCC-cEEEEECCHHHHHHHHhh------------cceeeccHHHH------------
Confidence            45788999999999999999988854 699999999999998866            34567776521            


Q ss_pred             cccccccCCCCCCceeEEEEeCChHHH-----HHHHHHHhHhcCCCeEEEEeccC
Q 026513          148 LSSHKIRGISQTEKYDVVIANILLNPL-----LQLADHIVSYAKPGAVVGISGIL  197 (237)
Q Consensus       148 ~~~~~~~~~~~~~~fD~I~~n~~~~~~-----~~~l~~~~~~L~~gG~liis~~~  197 (237)
                            ....++++||+|+++.+++++     ..+++++.++|+|||+++++...
T Consensus        94 ------~~~~~~~~fD~i~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  142 (240)
T 3dli_A           94 ------LKSLPDKYLDGVMISHFVEHLDPERLFELLSLCYSKMKYSSYIVIESPN  142 (240)
T ss_dssp             ------HHTSCTTCBSEEEEESCGGGSCGGGHHHHHHHHHHHBCTTCCEEEEEEC
T ss_pred             ------hhhcCCCCeeEEEECCchhhCCcHHHHHHHHHHHHHcCCCcEEEEEeCC
Confidence                  012236799999999887654     57899999999999999997554

>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*

Probab=99.52  E-value=3.9e-14  Score=116.19  Aligned_cols=103  Identities=19%  Similarity=0.221  Sum_probs=82.9

Q ss_pred             ccCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccc
Q 026513           68 IKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVED  147 (237)
Q Consensus        68 ~~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  147 (237)
                      ..++.+|||+|||+|.++..+++....+|+++|+++.+++.|++++...++.+    +.+..+|...             
T Consensus        89 ~~~~~~vLdiG~G~G~~~~~la~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~----v~~~~~d~~~-------------  151 (235)
T 1jg1_A           89 LKPGMNILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLERAGVKN----VHVILGDGSK-------------  151 (235)
T ss_dssp             CCTTCCEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHHHTTCCS----EEEEESCGGG-------------
T ss_pred             CCCCCEEEEEeCCcCHHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCC----cEEEECCccc-------------
Confidence            46788999999999999999987632789999999999999999999888765    7788888632             


Q ss_pred             cccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEeccC
Q 026513          148 LSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGIL  197 (237)
Q Consensus       148 ~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~~~  197 (237)
                             .+....+||+|+++.+++.+   .+.+.+.|+|||.++++...
T Consensus       152 -------~~~~~~~fD~Ii~~~~~~~~---~~~~~~~L~pgG~lvi~~~~  191 (235)
T 1jg1_A          152 -------GFPPKAPYDVIIVTAGAPKI---PEPLIEQLKIGGKLIIPVGS  191 (235)
T ss_dssp             -------CCGGGCCEEEEEECSBBSSC---CHHHHHTEEEEEEEEEEECS
T ss_pred             -------CCCCCCCccEEEECCcHHHH---HHHHHHhcCCCcEEEEEEec
Confidence                   12223469999998876543   34688899999999998643

>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17

Probab=99.52  E-value=9.6e-14  Score=119.13  Aligned_cols=142  Identities=14%  Similarity=0.162  Sum_probs=96.6

Q ss_pred             cCCCeEEEEcCcchHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHHc--CCCCCcceEEeccCccccccccccccccc
Q 026513           69 KGGELFLDYGTGSGILGIAAIKF-GAAMSVGADIDPQAIKSAHQNAALN--NIGPKKMKLHLVPDRTFTASMNERVDGVV  145 (237)
Q Consensus        69 ~~~~~vLDlG~G~G~~~~~la~~-~~~~v~~vD~s~~~i~~a~~~~~~~--~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  145 (237)
                      +.+.+|||+|||+|.++..+++. +..+|+++|+|+.+++.|++++...  ++...  ++.++.+|+.+..         
T Consensus       107 ~~~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~--rv~~~~~D~~~~l---------  175 (314)
T 2b2c_A          107 PDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHP--KLDLFCGDGFEFL---------  175 (314)
T ss_dssp             SSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCT--TEEEECSCHHHHH---------
T ss_pred             CCCCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHhccccCCC--CEEEEEChHHHHH---------
Confidence            45689999999999999999876 5688999999999999999987543  22111  4788899976311         


Q ss_pred             cccccccccCCCCCCceeEEEEeCChH------HH-HHHHHHHhHhcCCCeEEEEec--cCC--CCHHHHHHHHhhcccc
Q 026513          146 EDLSSHKIRGISQTEKYDVVIANILLN------PL-LQLADHIVSYAKPGAVVGISG--ILS--EQLPHIINRYSEFLED  214 (237)
Q Consensus       146 ~~~~~~~~~~~~~~~~fD~I~~n~~~~------~~-~~~l~~~~~~L~~gG~liis~--~~~--~~~~~~~~~~~~~~~~  214 (237)
                              ..  ..++||+|+++++.+      .+ .++++.+.++|+|||++++..  ...  +....+...++..|..
T Consensus       176 --------~~--~~~~fD~Ii~d~~~~~~~~~~l~t~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~vF~~  245 (314)
T 2b2c_A          176 --------KN--HKNEFDVIITDSSDPVGPAESLFGQSYYELLRDALKEDGILSSQGESVWLHLPLIAHLVAFNRKIFPA  245 (314)
T ss_dssp             --------HH--CTTCEEEEEECCC-------------HHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHHHCSE
T ss_pred             --------Hh--cCCCceEEEEcCCCCCCcchhhhHHHHHHHHHhhcCCCeEEEEECCCcccCHHHHHHHHHHHHHHCCc
Confidence                    01  256899999988531      12 578999999999999999963  111  1223444444444544


Q ss_pred             ceeee-------cCCEEEEEEEEc
Q 026513          215 ILVSE-------MDDWTCVSGKKK  231 (237)
Q Consensus       215 ~~~~~-------~~~w~~~~~~~~  231 (237)
                      +....       .+.|..++++|+
T Consensus       246 v~~~~~~iP~~~~g~~g~~~ask~  269 (314)
T 2b2c_A          246 VTYAQSIVSTYPSGSMGYLICAKN  269 (314)
T ss_dssp             EEEEEEECTTSGGGEEEEEEEESS
T ss_pred             ceEEEEEecCcCCCceEEEEEeCC
Confidence            43322       256788777765

>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus}

Probab=99.52  E-value=7.2e-14  Score=112.30  Aligned_cols=109  Identities=17%  Similarity=0.158  Sum_probs=85.0

Q ss_pred             HHHHHHhhccCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccc
Q 026513           60 CLLLLRRLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNE  139 (237)
Q Consensus        60 ~~~~l~~~~~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~  139 (237)
                      ....+.....++.+|||+|||+|.++..+   +..+++|+|+|+.+++.|+++.     .    .+.++.+|..+.    
T Consensus        26 ~~~~l~~~~~~~~~vLdiG~G~G~~~~~l---~~~~v~~vD~s~~~~~~a~~~~-----~----~~~~~~~d~~~~----   89 (211)
T 2gs9_A           26 EERALKGLLPPGESLLEVGAGTGYWLRRL---PYPQKVGVEPSEAMLAVGRRRA-----P----EATWVRAWGEAL----   89 (211)
T ss_dssp             HHHHHHTTCCCCSEEEEETCTTCHHHHHC---CCSEEEEECCCHHHHHHHHHHC-----T----TSEEECCCTTSC----
T ss_pred             HHHHHHHhcCCCCeEEEECCCCCHhHHhC---CCCeEEEEeCCHHHHHHHHHhC-----C----CcEEEEcccccC----
Confidence            34455555568889999999999998877   5558999999999999999876     2    266778886521    


Q ss_pred             cccccccccccccccCCCCCCceeEEEEeCChHHH---HHHHHHHhHhcCCCeEEEEeccCCCC
Q 026513          140 RVDGVVEDLSSHKIRGISQTEKYDVVIANILLNPL---LQLADHIVSYAKPGAVVGISGILSEQ  200 (237)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~~~~---~~~l~~~~~~L~~gG~liis~~~~~~  200 (237)
                                      ..++++||+|+++.+++++   ..+++++.++|+|||.++++......
T Consensus        90 ----------------~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~  137 (211)
T 2gs9_A           90 ----------------PFPGESFDVVLLFTTLEFVEDVERVLLEARRVLRPGGALVVGVLEALS  137 (211)
T ss_dssp             ----------------CSCSSCEEEEEEESCTTTCSCHHHHHHHHHHHEEEEEEEEEEEECTTS
T ss_pred             ----------------CCCCCcEEEEEEcChhhhcCCHHHHHHHHHHHcCCCCEEEEEecCCcC
Confidence                            1235689999999887654   57899999999999999998765443

>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A

Probab=99.52  E-value=5.4e-14  Score=118.65  Aligned_cols=102  Identities=20%  Similarity=0.298  Sum_probs=85.1

Q ss_pred             ccCCCeEEEEcCcchHHHHHHHHh-C-CCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccc
Q 026513           68 IKGGELFLDYGTGSGILGIAAIKF-G-AAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVV  145 (237)
Q Consensus        68 ~~~~~~vLDlG~G~G~~~~~la~~-~-~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  145 (237)
                      +.++.+|||+|||+|.++..++.. + ..+|+|+|+|+.+++.|++++...+.     ++.++++|+.+           
T Consensus        20 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~-----~v~~~~~d~~~-----------   83 (284)
T 3gu3_A           20 ITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPY-----DSEFLEGDATE-----------   83 (284)
T ss_dssp             CCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSSS-----EEEEEESCTTT-----------
T ss_pred             cCCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhcCC-----ceEEEEcchhh-----------
Confidence            356789999999999999999865 4 47899999999999999999886654     38888998763           


Q ss_pred             cccccccccCCCCCCceeEEEEeCChHHH---HHHHHHHhHhcCCCeEEEEec
Q 026513          146 EDLSSHKIRGISQTEKYDVVIANILLNPL---LQLADHIVSYAKPGAVVGISG  195 (237)
Q Consensus       146 ~~~~~~~~~~~~~~~~fD~I~~n~~~~~~---~~~l~~~~~~L~~gG~liis~  195 (237)
                                +...++||+|+++.+++++   ..+++++.++|+|||++++..
T Consensus        84 ----------~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~  126 (284)
T 3gu3_A           84 ----------IELNDKYDIAICHAFLLHMTTPETMLQKMIHSVKKGGKIICFE  126 (284)
T ss_dssp             ----------CCCSSCEEEEEEESCGGGCSSHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             ----------cCcCCCeeEEEECChhhcCCCHHHHHHHHHHHcCCCCEEEEEe
Confidence                      2224689999999987665   578999999999999999864

>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6

Probab=99.52  E-value=1e-13  Score=119.58  Aligned_cols=102  Identities=24%  Similarity=0.303  Sum_probs=84.2

Q ss_pred             ccCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccc
Q 026513           68 IKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVED  147 (237)
Q Consensus        68 ~~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  147 (237)
                      ..++.+|||+|||+|.++..+++.|..+|+|+|+| .+++.|++++..+++.+   ++.++.+|+.+.            
T Consensus        36 ~~~~~~VLDiGcGtG~ls~~la~~g~~~v~~vD~s-~~~~~a~~~~~~~~~~~---~i~~~~~d~~~~------------   99 (328)
T 1g6q_1           36 LFKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMS-SIIEMAKELVELNGFSD---KITLLRGKLEDV------------   99 (328)
T ss_dssp             HHTTCEEEEETCTTSHHHHHHHHTCCSEEEEEESS-THHHHHHHHHHHTTCTT---TEEEEESCTTTS------------
T ss_pred             hcCCCEEEEecCccHHHHHHHHHCCCCEEEEEChH-HHHHHHHHHHHHcCCCC---CEEEEECchhhc------------
Confidence            35788999999999999999998888899999999 59999999999998865   488889987631            


Q ss_pred             cccccccCCCCCCceeEEEEeCChHH------HHHHHHHHhHhcCCCeEEEE
Q 026513          148 LSSHKIRGISQTEKYDVVIANILLNP------LLQLADHIVSYAKPGAVVGI  193 (237)
Q Consensus       148 ~~~~~~~~~~~~~~fD~I~~n~~~~~------~~~~l~~~~~~L~~gG~lii  193 (237)
                              ..+.++||+|+++++.+.      ...++..+.++|+|||.++.
T Consensus       100 --------~~~~~~~D~Ivs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li~  143 (328)
T 1g6q_1          100 --------HLPFPKVDIIISEWMGYFLLYESMMDTVLYARDHYLVEGGLIFP  143 (328)
T ss_dssp             --------CCSSSCEEEEEECCCBTTBSTTCCHHHHHHHHHHHEEEEEEEES
T ss_pred             --------cCCCCcccEEEEeCchhhcccHHHHHHHHHHHHhhcCCCeEEEE
Confidence                    122468999999875322      45778889999999999984

>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}

Probab=99.52  E-value=3.4e-13  Score=121.14  Aligned_cols=107  Identities=17%  Similarity=0.122  Sum_probs=86.2

Q ss_pred             ccCCCeEEEEcCcchHHHHHHHHh-CC-CeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccc
Q 026513           68 IKGGELFLDYGTGSGILGIAAIKF-GA-AMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVV  145 (237)
Q Consensus        68 ~~~~~~vLDlG~G~G~~~~~la~~-~~-~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  145 (237)
                      ..+|.+|||+|||+|..+..++.. +. .+|+++|+++.+++.+++++...++.+    +.++++|..+..         
T Consensus       257 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~~~----v~~~~~D~~~~~---------  323 (450)
T 2yxl_A          257 PKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGIKI----VKPLVKDARKAP---------  323 (450)
T ss_dssp             CCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTCCS----EEEECSCTTCCS---------
T ss_pred             CCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCc----EEEEEcChhhcc---------
Confidence            467889999999999999999874 33 789999999999999999999988875    888899876311         


Q ss_pred             cccccccccCCCCCCceeEEEEeCChHH-------------------------HHHHHHHHhHhcCCCeEEEEecc
Q 026513          146 EDLSSHKIRGISQTEKYDVVIANILLNP-------------------------LLQLADHIVSYAKPGAVVGISGI  196 (237)
Q Consensus       146 ~~~~~~~~~~~~~~~~fD~I~~n~~~~~-------------------------~~~~l~~~~~~L~~gG~liis~~  196 (237)
                               ....+++||+|++|+|...                         ...++..+.++|+|||.+++++.
T Consensus       324 ---------~~~~~~~fD~Vl~D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvy~tc  390 (450)
T 2yxl_A          324 ---------EIIGEEVADKVLLDAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPGGRLLYTTC  390 (450)
T ss_dssp             ---------SSSCSSCEEEEEEECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEEEEEEEEES
T ss_pred             ---------hhhccCCCCEEEEcCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence                     1122368999999987411                         14679999999999999998744

>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}

Probab=99.52  E-value=1.3e-13  Score=113.97  Aligned_cols=99  Identities=17%  Similarity=0.199  Sum_probs=81.1

Q ss_pred             ccCCCeEEEEcCcchHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccc
Q 026513           68 IKGGELFLDYGTGSGILGIAAIKF-GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVE  146 (237)
Q Consensus        68 ~~~~~~vLDlG~G~G~~~~~la~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  146 (237)
                      ..++.+|||+|||+|.++..++.. +..+++|+|+|+.+++.++++     ..    ++.++.+|+.+            
T Consensus        31 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~-----~~----~~~~~~~d~~~------------   89 (259)
T 2p35_A           31 LERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADR-----LP----NTNFGKADLAT------------   89 (259)
T ss_dssp             CSCCSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHHHHHHHH-----ST----TSEEEECCTTT------------
T ss_pred             CCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHh-----CC----CcEEEECChhh------------
Confidence            356789999999999999998865 567899999999999999887     12    26677888752            


Q ss_pred             ccccccccCCCCCCceeEEEEeCChHHH---HHHHHHHhHhcCCCeEEEEecc
Q 026513          147 DLSSHKIRGISQTEKYDVVIANILLNPL---LQLADHIVSYAKPGAVVGISGI  196 (237)
Q Consensus       147 ~~~~~~~~~~~~~~~fD~I~~n~~~~~~---~~~l~~~~~~L~~gG~liis~~  196 (237)
                               +.++++||+|+++.+++++   ..++.++.++|+|||.++++..
T Consensus        90 ---------~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~  133 (259)
T 2p35_A           90 ---------WKPAQKADLLYANAVFQWVPDHLAVLSQLMDQLESGGVLAVQMP  133 (259)
T ss_dssp             ---------CCCSSCEEEEEEESCGGGSTTHHHHHHHHGGGEEEEEEEEEEEE
T ss_pred             ---------cCccCCcCEEEEeCchhhCCCHHHHHHHHHHhcCCCeEEEEEeC
Confidence                     1136789999999988765   5779999999999999999753

>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*

Probab=99.51  E-value=1.2e-13  Score=117.24  Aligned_cols=103  Identities=14%  Similarity=0.142  Sum_probs=82.3

Q ss_pred             ccCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCC---CCCcceEEeccCcccccccccccccc
Q 026513           68 IKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNI---GPKKMKLHLVPDRTFTASMNERVDGV  144 (237)
Q Consensus        68 ~~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~---~~~~~~v~~~~~d~~~~~~~~~~~~~  144 (237)
                      ..++.+|||+|||+|.++..+++.+ .+|+|+|+|+.+++.|++++...++   .    ++.++++|+.+          
T Consensus        80 ~~~~~~vLDlGcG~G~~~~~l~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~~----~v~~~~~d~~~----------  144 (299)
T 3g2m_A           80 GPVSGPVLELAAGMGRLTFPFLDLG-WEVTALELSTSVLAAFRKRLAEAPADVRD----RCTLVQGDMSA----------  144 (299)
T ss_dssp             CCCCSCEEEETCTTTTTHHHHHTTT-CCEEEEESCHHHHHHHHHHHHTSCHHHHT----TEEEEECBTTB----------
T ss_pred             CCCCCcEEEEeccCCHHHHHHHHcC-CeEEEEECCHHHHHHHHHHHhhccccccc----ceEEEeCchhc----------
Confidence            3445599999999999999999885 5699999999999999999887653   2    38899999863          


Q ss_pred             ccccccccccCCCCCCceeEEEEe-CChH-----HHHHHHHHHhHhcCCCeEEEEecc
Q 026513          145 VEDLSSHKIRGISQTEKYDVVIAN-ILLN-----PLLQLADHIVSYAKPGAVVGISGI  196 (237)
Q Consensus       145 ~~~~~~~~~~~~~~~~~fD~I~~n-~~~~-----~~~~~l~~~~~~L~~gG~liis~~  196 (237)
                                 +...++||+|++. ..++     ....+++++.++|+|||.|+++..
T Consensus       145 -----------~~~~~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~  191 (299)
T 3g2m_A          145 -----------FALDKRFGTVVISSGSINELDEADRRGLYASVREHLEPGGKFLLSLA  191 (299)
T ss_dssp             -----------CCCSCCEEEEEECHHHHTTSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             -----------CCcCCCcCEEEECCcccccCCHHHHHHHHHHHHHHcCCCcEEEEEee
Confidence                       2225789999974 3232     246789999999999999999754

>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus}

Probab=99.51  E-value=9.3e-14  Score=125.68  Aligned_cols=101  Identities=25%  Similarity=0.319  Sum_probs=83.9

Q ss_pred             cCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccccc
Q 026513           69 KGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDL  148 (237)
Q Consensus        69 ~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~  148 (237)
                      .++.+|||+|||+|.+++.+++.+..+|+|+|+|+ +++.|++++..+++..   ++.++.+|+.+              
T Consensus       157 ~~~~~VLDiGcGtG~la~~la~~~~~~V~gvD~s~-~l~~A~~~~~~~gl~~---~v~~~~~d~~~--------------  218 (480)
T 3b3j_A          157 FKDKIVLDVGCGSGILSFFAAQAGARKIYAVEAST-MAQHAEVLVKSNNLTD---RIVVIPGKVEE--------------  218 (480)
T ss_dssp             TTTCEEEEESCSTTHHHHHHHHTTCSEEEEEECHH-HHHHHHHHHHHTTCTT---TEEEEESCTTT--------------
T ss_pred             cCCCEEEEecCcccHHHHHHHHcCCCEEEEEEcHH-HHHHHHHHHHHcCCCC---cEEEEECchhh--------------
Confidence            46789999999999999999988888999999999 9999999999998854   48899999863              


Q ss_pred             ccccccCCCCCCceeEEEEeCChHHH-----HHHHHHHhHhcCCCeEEEEe
Q 026513          149 SSHKIRGISQTEKYDVVIANILLNPL-----LQLADHIVSYAKPGAVVGIS  194 (237)
Q Consensus       149 ~~~~~~~~~~~~~fD~I~~n~~~~~~-----~~~l~~~~~~L~~gG~liis  194 (237)
                             +...++||+|+++++.++.     ...+..+.++|+|||.++++
T Consensus       219 -------~~~~~~fD~Ivs~~~~~~~~~e~~~~~l~~~~~~LkpgG~li~~  262 (480)
T 3b3j_A          219 -------VSLPEQVDIIISEPMGYMLFNERMLESYLHAKKYLKPSGNMFPT  262 (480)
T ss_dssp             -------CCCSSCEEEEECCCCHHHHTCHHHHHHHHHGGGGEEEEEEEESC
T ss_pred             -------CccCCCeEEEEEeCchHhcCcHHHHHHHHHHHHhcCCCCEEEEE
Confidence                   1123589999999885433     34566788999999999863

>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}

Probab=99.51  E-value=1e-13  Score=116.42  Aligned_cols=99  Identities=24%  Similarity=0.215  Sum_probs=80.5

Q ss_pred             ccCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccc
Q 026513           68 IKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVED  147 (237)
Q Consensus        68 ~~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  147 (237)
                      ..++.+|||+|||+|.++..++.. ..+|+|+|+|+.+++.|++++     .    ++.+..+|+.+             
T Consensus        55 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~v~gvD~s~~~~~~a~~~~-----~----~~~~~~~d~~~-------------  111 (279)
T 3ccf_A           55 PQPGEFILDLGCGTGQLTEKIAQS-GAEVLGTDNAATMIEKARQNY-----P----HLHFDVADARN-------------  111 (279)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHHHC-----T----TSCEEECCTTT-------------
T ss_pred             CCCCCEEEEecCCCCHHHHHHHhC-CCeEEEEECCHHHHHHHHhhC-----C----CCEEEECChhh-------------
Confidence            356789999999999999999884 568999999999999998775     2    25567777652             


Q ss_pred             cccccccCCCCCCceeEEEEeCChHHH---HHHHHHHhHhcCCCeEEEEeccC
Q 026513          148 LSSHKIRGISQTEKYDVVIANILLNPL---LQLADHIVSYAKPGAVVGISGIL  197 (237)
Q Consensus       148 ~~~~~~~~~~~~~~fD~I~~n~~~~~~---~~~l~~~~~~L~~gG~liis~~~  197 (237)
                              +..+++||+|+++.+++++   ..++.++.++|+|||++++....
T Consensus       112 --------~~~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~~~~~~  156 (279)
T 3ccf_A          112 --------FRVDKPLDAVFSNAMLHWVKEPEAAIASIHQALKSGGRFVAEFGG  156 (279)
T ss_dssp             --------CCCSSCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             --------CCcCCCcCEEEEcchhhhCcCHHHHHHHHHHhcCCCcEEEEEecC
Confidence                    2225689999999988664   57899999999999999997543

>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}

Probab=99.51  E-value=4.2e-14  Score=114.09  Aligned_cols=102  Identities=15%  Similarity=0.173  Sum_probs=83.2

Q ss_pred             ccCCCeEEEEcCcchHHHHHHHHhCC--CeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccc
Q 026513           68 IKGGELFLDYGTGSGILGIAAIKFGA--AMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVV  145 (237)
Q Consensus        68 ~~~~~~vLDlG~G~G~~~~~la~~~~--~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  145 (237)
                      ..++.+|||+|||+|.++..+++...  .+|+++|+++.+++.|++++...++.+    +.+..+|...           
T Consensus        75 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~----v~~~~~d~~~-----------  139 (215)
T 2yxe_A           75 LKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYDN----VIVIVGDGTL-----------  139 (215)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTCTT----EEEEESCGGG-----------
T ss_pred             CCCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCC----eEEEECCccc-----------
Confidence            46788999999999999999987632  789999999999999999998887765    7788888642           


Q ss_pred             cccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEecc
Q 026513          146 EDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGI  196 (237)
Q Consensus       146 ~~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~~  196 (237)
                               .+...++||+|+++.+++++.   +.+.++|+|||.+++...
T Consensus       140 ---------~~~~~~~fD~v~~~~~~~~~~---~~~~~~L~pgG~lv~~~~  178 (215)
T 2yxe_A          140 ---------GYEPLAPYDRIYTTAAGPKIP---EPLIRQLKDGGKLLMPVG  178 (215)
T ss_dssp             ---------CCGGGCCEEEEEESSBBSSCC---HHHHHTEEEEEEEEEEES
T ss_pred             ---------CCCCCCCeeEEEECCchHHHH---HHHHHHcCCCcEEEEEEC
Confidence                     111246899999998876543   578899999999999753

>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}

Probab=99.51  E-value=8.4e-13  Score=115.78  Aligned_cols=118  Identities=13%  Similarity=0.011  Sum_probs=90.2

Q ss_pred             cCCCeEEEEcCcchHHHHHHHHhCC-CeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccc
Q 026513           69 KGGELFLDYGTGSGILGIAAIKFGA-AMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVED  147 (237)
Q Consensus        69 ~~~~~vLDlG~G~G~~~~~la~~~~-~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  147 (237)
                      .++.+|||+| |+|.+++.++..+. .+|+++|+|+.+++.|++++..+++.+    +.++++|+.+..           
T Consensus       171 ~~~~~VLDlG-G~G~~~~~la~~~~~~~v~~vDi~~~~l~~a~~~~~~~g~~~----v~~~~~D~~~~l-----------  234 (373)
T 2qm3_A          171 LENKDIFVLG-DDDLTSIALMLSGLPKRIAVLDIDERLTKFIEKAANEIGYED----IEIFTFDLRKPL-----------  234 (373)
T ss_dssp             STTCEEEEES-CTTCHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHHTCCC----EEEECCCTTSCC-----------
T ss_pred             CCCCEEEEEC-CCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCC----EEEEEChhhhhc-----------
Confidence            3578999999 99999999988755 789999999999999999999988763    889999986310           


Q ss_pred             cccccccCCCCCCceeEEEEeCChHH--HHHHHHHHhHhcCCCe-EEEEeccC-CCCH---HHHHHHHh
Q 026513          148 LSSHKIRGISQTEKYDVVIANILLNP--LLQLADHIVSYAKPGA-VVGISGIL-SEQL---PHIINRYS  209 (237)
Q Consensus       148 ~~~~~~~~~~~~~~fD~I~~n~~~~~--~~~~l~~~~~~L~~gG-~liis~~~-~~~~---~~~~~~~~  209 (237)
                            .. ...++||+|++|+|++.  ...++..+.+.|+||| .++++... ....   ..+...+.
T Consensus       235 ------~~-~~~~~fD~Vi~~~p~~~~~~~~~l~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~l~  296 (373)
T 2qm3_A          235 ------PD-YALHKFDTFITDPPETLEAIRAFVGRGIATLKGPRCAGYFGITRRESSLDKWREIQKLLL  296 (373)
T ss_dssp             ------CT-TTSSCBSEEEECCCSSHHHHHHHHHHHHHTBCSTTCEEEEEECTTTCCHHHHHHHHHHHH
T ss_pred             ------hh-hccCCccEEEECCCCchHHHHHHHHHHHHHcccCCeEEEEEEecCcCCHHHHHHHHHHHH
Confidence                  00 11358999999998743  4678899999999999 44666543 2333   44444443

>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32

Probab=99.51  E-value=1.4e-13  Score=110.38  Aligned_cols=98  Identities=18%  Similarity=0.231  Sum_probs=79.6

Q ss_pred             ccCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccc
Q 026513           68 IKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVED  147 (237)
Q Consensus        68 ~~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  147 (237)
                      ..++.+|||+|||+|.++..+++.+..+++|+|+|+.+++.|++++..+++ +    +.++++|+.+             
T Consensus        47 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-~----~~~~~~d~~~-------------  108 (207)
T 1wy7_A           47 DIEGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEFKG-K----FKVFIGDVSE-------------  108 (207)
T ss_dssp             SSTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHTGGGTT-S----EEEEESCGGG-------------
T ss_pred             CCCcCEEEEeeCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHcCC-C----EEEEECchHH-------------
Confidence            346889999999999999999988777899999999999999999988776 3    8888998762             


Q ss_pred             cccccccCCCCCCceeEEEEeCChHHH-----HHHHHHHhHhcCCCeEEEEecc
Q 026513          148 LSSHKIRGISQTEKYDVVIANILLNPL-----LQLADHIVSYAKPGAVVGISGI  196 (237)
Q Consensus       148 ~~~~~~~~~~~~~~fD~I~~n~~~~~~-----~~~l~~~~~~L~~gG~liis~~  196 (237)
                              +  ..+||+|++|+|++..     ..+++.+.+.+   |.++++++
T Consensus       109 --------~--~~~~D~v~~~~p~~~~~~~~~~~~l~~~~~~l---~~~~~~~~  149 (207)
T 1wy7_A          109 --------F--NSRVDIVIMNPPFGSQRKHADRPFLLKAFEIS---DVVYSIHL  149 (207)
T ss_dssp             --------C--CCCCSEEEECCCCSSSSTTTTHHHHHHHHHHC---SEEEEEEE
T ss_pred             --------c--CCCCCEEEEcCCCccccCCchHHHHHHHHHhc---CcEEEEEe
Confidence                    2  2489999999996432     36778888877   55666664

>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}

Probab=99.51  E-value=1.2e-13  Score=112.87  Aligned_cols=108  Identities=16%  Similarity=0.125  Sum_probs=83.3

Q ss_pred             HHHHHHHHhhccCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccc
Q 026513           58 KLCLLLLRRLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASM  137 (237)
Q Consensus        58 ~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~  137 (237)
                      ..+...+.....++.+|||+|||+|.++..+++.+. +++|+|+|+.+++.|+++.     .    ++.++.+|+.+   
T Consensus        28 ~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~~D~s~~~~~~a~~~~-----~----~~~~~~~d~~~---   94 (239)
T 3bxo_A           28 SDIADLVRSRTPEASSLLDVACGTGTHLEHFTKEFG-DTAGLELSEDMLTHARKRL-----P----DATLHQGDMRD---   94 (239)
T ss_dssp             HHHHHHHHHHCTTCCEEEEETCTTSHHHHHHHHHHS-EEEEEESCHHHHHHHHHHC-----T----TCEEEECCTTT---
T ss_pred             HHHHHHHHHhcCCCCeEEEecccCCHHHHHHHHhCC-cEEEEeCCHHHHHHHHHhC-----C----CCEEEECCHHH---
Confidence            345555555556788999999999999999987744 8999999999999998864     2    26677888752   


Q ss_pred             cccccccccccccccccCCCCCCceeEEEEeC-ChH------HHHHHHHHHhHhcCCCeEEEEecc
Q 026513          138 NERVDGVVEDLSSHKIRGISQTEKYDVVIANI-LLN------PLLQLADHIVSYAKPGAVVGISGI  196 (237)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~-~~~------~~~~~l~~~~~~L~~gG~liis~~  196 (237)
                                        ....++||+|+|.. +++      ....+++.+.++|+|||.++++..
T Consensus        95 ------------------~~~~~~~D~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~  142 (239)
T 3bxo_A           95 ------------------FRLGRKFSAVVSMFSSVGYLKTTEELGAAVASFAEHLEPGGVVVVEPW  142 (239)
T ss_dssp             ------------------CCCSSCEEEEEECTTGGGGCCSHHHHHHHHHHHHHTEEEEEEEEECCC
T ss_pred             ------------------cccCCCCcEEEEcCchHhhcCCHHHHHHHHHHHHHhcCCCeEEEEEec
Confidence                              11256899999644 433      335789999999999999999854

>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*

Probab=99.50  E-value=1.2e-13  Score=118.05  Aligned_cols=142  Identities=14%  Similarity=0.110  Sum_probs=98.1

Q ss_pred             cCCCeEEEEcCcchHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHH--cCCCCCcceEEeccCccccccccccccccc
Q 026513           69 KGGELFLDYGTGSGILGIAAIKF-GAAMSVGADIDPQAIKSAHQNAAL--NNIGPKKMKLHLVPDRTFTASMNERVDGVV  145 (237)
Q Consensus        69 ~~~~~vLDlG~G~G~~~~~la~~-~~~~v~~vD~s~~~i~~a~~~~~~--~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  145 (237)
                      ..+.+|||+|||+|.++..+++. +..+|+++|+|+.+++.|++++..  +++...  +++++.+|..+..         
T Consensus        94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~--rv~v~~~Da~~~l---------  162 (304)
T 2o07_A           94 PNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSS--KLTLHVGDGFEFM---------  162 (304)
T ss_dssp             SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCT--TEEEEESCHHHHH---------
T ss_pred             CCCCEEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCC--cEEEEECcHHHHH---------
Confidence            45689999999999999999876 467899999999999999998765  233111  3778888875311         


Q ss_pred             cccccccccCCCCCCceeEEEEeCChHH-------HHHHHHHHhHhcCCCeEEEEec-c-CCC--CHHHHHHHHhhcccc
Q 026513          146 EDLSSHKIRGISQTEKYDVVIANILLNP-------LLQLADHIVSYAKPGAVVGISG-I-LSE--QLPHIINRYSEFLED  214 (237)
Q Consensus       146 ~~~~~~~~~~~~~~~~fD~I~~n~~~~~-------~~~~l~~~~~~L~~gG~liis~-~-~~~--~~~~~~~~~~~~~~~  214 (237)
                              ..  ..++||+|+++.+.+.       ..++++.+.++|+|||.+++.. . +..  ....+...+...|..
T Consensus       163 --------~~--~~~~fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~f~~  232 (304)
T 2o07_A          163 --------KQ--NQDAFDVIITDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQGECQWLHLDLIKEMRQFCQSLFPV  232 (304)
T ss_dssp             --------HT--CSSCEEEEEEECC-----------CHHHHHHHHHEEEEEEEEEEEECTTTCHHHHHHHHHHHHHHCSE
T ss_pred             --------hh--CCCCceEEEECCCCCCCcchhhhHHHHHHHHHhccCCCeEEEEecCCcccchHHHHHHHHHHHHhCCC
Confidence                    11  2468999999987532       2468999999999999999864 2 221  123444444444543


Q ss_pred             ceee-----e--cCCEEEEEEEEc
Q 026513          215 ILVS-----E--MDDWTCVSGKKK  231 (237)
Q Consensus       215 ~~~~-----~--~~~w~~~~~~~~  231 (237)
                      +...     .  .+.|..+++++.
T Consensus       233 v~~~~~~vP~~~~g~~g~~~as~~  256 (304)
T 2o07_A          233 VAYAYCTIPTYPSGQIGFMLCSKN  256 (304)
T ss_dssp             EEEEEEECTTSGGGEEEEEEEESS
T ss_pred             ceeEEEEeccccCcceEEEEEeCC
Confidence            3322     1  367888888765

>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54

Probab=99.50  E-value=6.2e-13  Score=110.12  Aligned_cols=84  Identities=17%  Similarity=0.138  Sum_probs=65.4

Q ss_pred             CCCeEEEEcCcchHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccccc
Q 026513           70 GGELFLDYGTGSGILGIAAIKF-GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDL  148 (237)
Q Consensus        70 ~~~~vLDlG~G~G~~~~~la~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~  148 (237)
                      ++.+|||+|||+|.++..++.. +..+|+|+|+|+.+++.|++++..+++.+   ++.++++|..+..            
T Consensus        65 ~~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~---~v~~~~~d~~~~~------------  129 (254)
T 2h00_A           65 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSD---LIKVVKVPQKTLL------------  129 (254)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTT---TEEEEECCTTCSS------------
T ss_pred             CCCEEEEeCCChhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHcCCCc---cEEEEEcchhhhh------------
Confidence            5779999999999999988764 45789999999999999999999988865   4888888864210            


Q ss_pred             ccccccCCCC--CCceeEEEEeCChH
Q 026513          149 SSHKIRGISQ--TEKYDVVIANILLN  172 (237)
Q Consensus       149 ~~~~~~~~~~--~~~fD~I~~n~~~~  172 (237)
                          ...+..  +.+||+|++|||+.
T Consensus       130 ----~~~~~~~~~~~fD~i~~npp~~  151 (254)
T 2h00_A          130 ----MDALKEESEIIYDFCMCNPPFF  151 (254)
T ss_dssp             ----TTTSTTCCSCCBSEEEECCCCC
T ss_pred             ----hhhhhcccCCcccEEEECCCCc
Confidence                001111  25899999998864

>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A

Probab=99.50  E-value=7.3e-14  Score=121.47  Aligned_cols=101  Identities=24%  Similarity=0.320  Sum_probs=83.4

Q ss_pred             cCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccccc
Q 026513           69 KGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDL  148 (237)
Q Consensus        69 ~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~  148 (237)
                      .++.+|||+|||+|.++..+++.+..+|+|+|+|+ +++.|+++++.+++..   ++.++.+|+.+              
T Consensus        49 ~~~~~VLDiGcGtG~ls~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~l~~---~v~~~~~d~~~--------------  110 (348)
T 2y1w_A           49 FKDKIVLDVGCGSGILSFFAAQAGARKIYAVEAST-MAQHAEVLVKSNNLTD---RIVVIPGKVEE--------------  110 (348)
T ss_dssp             TTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECST-HHHHHHHHHHHTTCTT---TEEEEESCTTT--------------
T ss_pred             CCcCEEEEcCCCccHHHHHHHhCCCCEEEEECCHH-HHHHHHHHHHHcCCCC---cEEEEEcchhh--------------
Confidence            47889999999999999999988888999999997 8899999999988854   48888998763              


Q ss_pred             ccccccCCCCCCceeEEEEeCChH-----HHHHHHHHHhHhcCCCeEEEEe
Q 026513          149 SSHKIRGISQTEKYDVVIANILLN-----PLLQLADHIVSYAKPGAVVGIS  194 (237)
Q Consensus       149 ~~~~~~~~~~~~~fD~I~~n~~~~-----~~~~~l~~~~~~L~~gG~liis  194 (237)
                             ....++||+|+++++.+     .+...+..+.++|+|||.++++
T Consensus       111 -------~~~~~~~D~Ivs~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~  154 (348)
T 2y1w_A          111 -------VSLPEQVDIIISEPMGYMLFNERMLESYLHAKKYLKPSGNMFPT  154 (348)
T ss_dssp             -------CCCSSCEEEEEECCCBTTBTTTSHHHHHHHGGGGEEEEEEEESC
T ss_pred             -------CCCCCceeEEEEeCchhcCChHHHHHHHHHHHhhcCCCeEEEEe
Confidence                   11236899999997643     2345677889999999999864

>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7

Probab=99.50  E-value=4.9e-14  Score=114.93  Aligned_cols=99  Identities=19%  Similarity=0.216  Sum_probs=81.5

Q ss_pred             ccCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccc
Q 026513           68 IKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVED  147 (237)
Q Consensus        68 ~~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  147 (237)
                      ..++.+|||+|||+|.++..++..+ .+|+++|+++.+++.|++++...+  +    +.++.+|..+             
T Consensus        68 ~~~~~~vLdiG~G~G~~~~~l~~~~-~~v~~vD~~~~~~~~a~~~~~~~~--~----v~~~~~d~~~-------------  127 (231)
T 1vbf_A           68 LHKGQKVLEIGTGIGYYTALIAEIV-DKVVSVEINEKMYNYASKLLSYYN--N----IKLILGDGTL-------------  127 (231)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHS-SEEEEEESCHHHHHHHHHHHTTCS--S----EEEEESCGGG-------------
T ss_pred             CCCCCEEEEEcCCCCHHHHHHHHHc-CEEEEEeCCHHHHHHHHHHHhhcC--C----eEEEECCccc-------------
Confidence            4678899999999999999999886 789999999999999999987665  2    7888888763             


Q ss_pred             cccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEecc
Q 026513          148 LSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGI  196 (237)
Q Consensus       148 ~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~~  196 (237)
                             .+...++||+|+++.+++++.   +.+.+.|+|||+++++..
T Consensus       128 -------~~~~~~~fD~v~~~~~~~~~~---~~~~~~L~pgG~l~~~~~  166 (231)
T 1vbf_A          128 -------GYEEEKPYDRVVVWATAPTLL---CKPYEQLKEGGIMILPIG  166 (231)
T ss_dssp             -------CCGGGCCEEEEEESSBBSSCC---HHHHHTEEEEEEEEEEEC
T ss_pred             -------ccccCCCccEEEECCcHHHHH---HHHHHHcCCCcEEEEEEc
Confidence                   111246899999998876543   568899999999999754

>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A

Probab=99.50  E-value=1.4e-13  Score=119.06  Aligned_cols=143  Identities=15%  Similarity=0.123  Sum_probs=99.4

Q ss_pred             cCCCeEEEEcCcchHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHHc--CCCCCcceEEeccCccccccccccccccc
Q 026513           69 KGGELFLDYGTGSGILGIAAIKF-GAAMSVGADIDPQAIKSAHQNAALN--NIGPKKMKLHLVPDRTFTASMNERVDGVV  145 (237)
Q Consensus        69 ~~~~~vLDlG~G~G~~~~~la~~-~~~~v~~vD~s~~~i~~a~~~~~~~--~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  145 (237)
                      +.+.+|||+|||+|.++..+++. +..+|+++|+|+.+++.|++++...  ++...  ++.++.+|+.+..         
T Consensus       119 ~~~~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~--rv~~~~~D~~~~l---------  187 (334)
T 1xj5_A          119 PNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDP--RVNLVIGDGVAFL---------  187 (334)
T ss_dssp             SCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGST--TEEEEESCHHHHH---------
T ss_pred             CCCCEEEEECCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCC--cEEEEECCHHHHH---------
Confidence            46689999999999999999876 5678999999999999999987642  33111  3888899976311         


Q ss_pred             cccccccccCCCCCCceeEEEEeCCh--H---H--HHHHHHHHhHhcCCCeEEEEe-ccCCCC---HHHHHHHHhhcccc
Q 026513          146 EDLSSHKIRGISQTEKYDVVIANILL--N---P--LLQLADHIVSYAKPGAVVGIS-GILSEQ---LPHIINRYSEFLED  214 (237)
Q Consensus       146 ~~~~~~~~~~~~~~~~fD~I~~n~~~--~---~--~~~~l~~~~~~L~~gG~liis-~~~~~~---~~~~~~~~~~~~~~  214 (237)
                              ... ..++||+|++|++.  +   .  ...+++.+.++|+|||++++. +.....   ...+...++..|..
T Consensus       188 --------~~~-~~~~fDlIi~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~F~~  258 (334)
T 1xj5_A          188 --------KNA-AEGSYDAVIVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQAESLWLHMDIIEDIVSNCREIFKG  258 (334)
T ss_dssp             --------HTS-CTTCEEEEEECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHHHCSS
T ss_pred             --------Hhc-cCCCccEEEECCCCccCcchhhhHHHHHHHHHHhcCCCcEEEEecCCccccHHHHHHHHHHHHHhCcc
Confidence                    111 24689999998752  1   1  367899999999999999996 222222   23344444544442


Q ss_pred             -c-----eeee--cCCEEEEEEEEc
Q 026513          215 -I-----LVSE--MDDWTCVSGKKK  231 (237)
Q Consensus       215 -~-----~~~~--~~~w~~~~~~~~  231 (237)
                       .     .+..  .+.|..+++++.
T Consensus       259 ~~~~~~~~vP~y~~g~~gf~~as~~  283 (334)
T 1xj5_A          259 SVNYAWTSVPTYPSGVIGFMLCSTE  283 (334)
T ss_dssp             CEEEEEEECTTSGGGEEEEEEEECS
T ss_pred             ccceEEEeCCcccCCceEEEEcccC
Confidence             1     1122  367988888864

>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}

Probab=99.50  E-value=9.1e-14  Score=113.35  Aligned_cols=120  Identities=17%  Similarity=0.114  Sum_probs=86.6

Q ss_pred             HHHHHHHHhhccCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccc
Q 026513           58 KLCLLLLRRLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASM  137 (237)
Q Consensus        58 ~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~  137 (237)
                      .++...+...+.++.+|||+|||+|.++..+++.+ .+|+|+|+|+.+++.|+++     ..    ++.++++|+.+.  
T Consensus        36 ~l~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~v~~vD~s~~~~~~a~~~-----~~----~~~~~~~d~~~~--  103 (226)
T 3m33_A           36 LTFDLWLSRLLTPQTRVLEAGCGHGPDAARFGPQA-ARWAAYDFSPELLKLARAN-----AP----HADVYEWNGKGE--  103 (226)
T ss_dssp             HHHHHHHHHHCCTTCEEEEESCTTSHHHHHHGGGS-SEEEEEESCHHHHHHHHHH-----CT----TSEEEECCSCSS--
T ss_pred             HHHHHHHHhcCCCCCeEEEeCCCCCHHHHHHHHcC-CEEEEEECCHHHHHHHHHh-----CC----CceEEEcchhhc--
Confidence            33444444456788999999999999999999884 5799999999999999988     22    267888887421  


Q ss_pred             cccccccccccccccccCCCC-CCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEeccCCCCHHHHHHHHhh
Q 026513          138 NERVDGVVEDLSSHKIRGISQ-TEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILSEQLPHIINRYSE  210 (237)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~-~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~~~~~~~~~~~~~~~~  210 (237)
                                       .... +++||+|+++.   ....++..+.++|+|||.++...- .....++...+..
T Consensus       104 -----------------~~~~~~~~fD~v~~~~---~~~~~l~~~~~~LkpgG~l~~~~~-~~~~~~~~~~l~~  156 (226)
T 3m33_A          104 -----------------LPAGLGAPFGLIVSRR---GPTSVILRLPELAAPDAHFLYVGP-RLNVPEVPERLAA  156 (226)
T ss_dssp             -----------------CCTTCCCCEEEEEEES---CCSGGGGGHHHHEEEEEEEEEEES-SSCCTHHHHHHHH
T ss_pred             -----------------cCCcCCCCEEEEEeCC---CHHHHHHHHHHHcCCCcEEEEeCC-cCCHHHHHHHHHH
Confidence                             1122 57899999985   334567889999999999994321 2233455555554

>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*

Probab=99.50  E-value=5.1e-14  Score=124.03  Aligned_cols=104  Identities=18%  Similarity=0.159  Sum_probs=85.8

Q ss_pred             cCCCeEEEEcCcchHHHHHHHHh--CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcce-EEeccCccccccccccccccc
Q 026513           69 KGGELFLDYGTGSGILGIAAIKF--GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMK-LHLVPDRTFTASMNERVDGVV  145 (237)
Q Consensus        69 ~~~~~vLDlG~G~G~~~~~la~~--~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~-v~~~~~d~~~~~~~~~~~~~~  145 (237)
                      .+|.+|||++||+|.+++.++..  |+.+|+++|+++.+++.+++|++.|++.+   + +.++.+|+.+.          
T Consensus        51 ~~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ngl~~---~~v~v~~~Da~~~----------  117 (392)
T 3axs_A           51 GRPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNNIPE---DRYEIHGMEANFF----------  117 (392)
T ss_dssp             CSCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTTCCG---GGEEEECSCHHHH----------
T ss_pred             CCCCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhCCCC---ceEEEEeCCHHHH----------
Confidence            36889999999999999999874  55789999999999999999999999875   4 78889998631          


Q ss_pred             ccccccccc-CCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEec
Q 026513          146 EDLSSHKIR-GISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISG  195 (237)
Q Consensus       146 ~~~~~~~~~-~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~  195 (237)
                             +. ..  .++||+|++||. .....+++.+.++|++||.|++++
T Consensus       118 -------l~~~~--~~~fD~V~lDP~-g~~~~~l~~a~~~Lk~gGll~~t~  158 (392)
T 3axs_A          118 -------LRKEW--GFGFDYVDLDPF-GTPVPFIESVALSMKRGGILSLTA  158 (392)
T ss_dssp             -------HHSCC--SSCEEEEEECCS-SCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred             -------HHHhh--CCCCcEEEECCC-cCHHHHHHHHHHHhCCCCEEEEEe
Confidence                   11 11  457999999993 223468888999999999999986

>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*

Probab=99.49  E-value=7.5e-14  Score=113.53  Aligned_cols=112  Identities=21%  Similarity=0.291  Sum_probs=85.7

Q ss_pred             HHHHHHHhhccCCCeEEEEcCcchHHHHHHHHh-CC-CeEEEEeCCHHHHHHHHHHHHHcCC----CCCcceEEeccCcc
Q 026513           59 LCLLLLRRLIKGGELFLDYGTGSGILGIAAIKF-GA-AMSVGADIDPQAIKSAHQNAALNNI----GPKKMKLHLVPDRT  132 (237)
Q Consensus        59 ~~~~~l~~~~~~~~~vLDlG~G~G~~~~~la~~-~~-~~v~~vD~s~~~i~~a~~~~~~~~~----~~~~~~v~~~~~d~  132 (237)
                      .++..+...+.++.+|||+|||+|.++..+++. +. .+|+++|+++.+++.+++++...+.    ..   ++.++.+|.
T Consensus        66 ~~l~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~---~v~~~~~d~  142 (226)
T 1i1n_A           66 YALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSG---RVQLVVGDG  142 (226)
T ss_dssp             HHHHHTTTTSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTS---SEEEEESCG
T ss_pred             HHHHHHHhhCCCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCC---cEEEEECCc
Confidence            444444334578899999999999999999875 33 5899999999999999999887653    11   277888887


Q ss_pred             ccccccccccccccccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEecc
Q 026513          133 FTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGI  196 (237)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~~  196 (237)
                      ...                    ....++||+|+++.+.+.   +++.+.+.|+|||+++++..
T Consensus       143 ~~~--------------------~~~~~~fD~i~~~~~~~~---~~~~~~~~LkpgG~lv~~~~  183 (226)
T 1i1n_A          143 RMG--------------------YAEEAPYDAIHVGAAAPV---VPQALIDQLKPGGRLILPVG  183 (226)
T ss_dssp             GGC--------------------CGGGCCEEEEEECSBBSS---CCHHHHHTEEEEEEEEEEES
T ss_pred             ccC--------------------cccCCCcCEEEECCchHH---HHHHHHHhcCCCcEEEEEEe
Confidence            531                    112468999999987643   45678899999999999743

>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*

Probab=99.49  E-value=9e-13  Score=115.34  Aligned_cols=102  Identities=17%  Similarity=0.224  Sum_probs=85.0

Q ss_pred             cCCCeEEEEcCcchHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccc
Q 026513           69 KGGELFLDYGTGSGILGIAAIKF-GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVED  147 (237)
Q Consensus        69 ~~~~~vLDlG~G~G~~~~~la~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  147 (237)
                      .++.+|||+|||+|.++..+++. +..+++++|+ +.+++.|++++...++..   ++.++.+|+++             
T Consensus       201 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~l~~---~v~~~~~d~~~-------------  263 (369)
T 3gwz_A          201 SGAATAVDIGGGRGSLMAAVLDAFPGLRGTLLER-PPVAEEARELLTGRGLAD---RCEILPGDFFE-------------  263 (369)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTT---TEEEEECCTTT-------------
T ss_pred             ccCcEEEEeCCCccHHHHHHHHHCCCCeEEEEcC-HHHHHHHHHhhhhcCcCC---ceEEeccCCCC-------------
Confidence            45789999999999999998865 5678999999 999999999998888754   48899999762             


Q ss_pred             cccccccCCCCCCceeEEEEeCChHHH-----HHHHHHHhHhcCCCeEEEEecc
Q 026513          148 LSSHKIRGISQTEKYDVVIANILLNPL-----LQLADHIVSYAKPGAVVGISGI  196 (237)
Q Consensus       148 ~~~~~~~~~~~~~~fD~I~~n~~~~~~-----~~~l~~~~~~L~~gG~liis~~  196 (237)
                              ..+. .||+|++..+++..     .++++++.+.|+|||++++.+.
T Consensus       264 --------~~p~-~~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e~  308 (369)
T 3gwz_A          264 --------TIPD-GADVYLIKHVLHDWDDDDVVRILRRIATAMKPDSRLLVIDN  308 (369)
T ss_dssp             --------CCCS-SCSEEEEESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEEE
T ss_pred             --------CCCC-CceEEEhhhhhccCCHHHHHHHHHHHHHHcCCCCEEEEEEe
Confidence                    1122 79999998887654     3689999999999999999754

>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*

Probab=99.49  E-value=1.2e-13  Score=107.03  Aligned_cols=123  Identities=13%  Similarity=0.144  Sum_probs=89.6

Q ss_pred             ccCCCeEEEEcCcchHHHHHHHHh-C-CCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccc
Q 026513           68 IKGGELFLDYGTGSGILGIAAIKF-G-AAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVV  145 (237)
Q Consensus        68 ~~~~~~vLDlG~G~G~~~~~la~~-~-~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  145 (237)
                      +.++.+|||+|||+|.++..+++. + ..+++++|+++ +++.          .    ++.++.+|+.+....+      
T Consensus        20 ~~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~-~~~~----------~----~~~~~~~d~~~~~~~~------   78 (180)
T 1ej0_A           20 FKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP-MDPI----------V----GVDFLQGDFRDELVMK------   78 (180)
T ss_dssp             CCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC-CCCC----------T----TEEEEESCTTSHHHHH------
T ss_pred             CCCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc-cccc----------C----cEEEEEcccccchhhh------
Confidence            467889999999999999999876 4 47899999999 6532          2    2777888876421000      


Q ss_pred             cccccccccCCCCCCceeEEEEeCChHH--------------HHHHHHHHhHhcCCCeEEEEeccCCCCHHHHHHHHhhc
Q 026513          146 EDLSSHKIRGISQTEKYDVVIANILLNP--------------LLQLADHIVSYAKPGAVVGISGILSEQLPHIINRYSEF  211 (237)
Q Consensus       146 ~~~~~~~~~~~~~~~~fD~I~~n~~~~~--------------~~~~l~~~~~~L~~gG~liis~~~~~~~~~~~~~~~~~  211 (237)
                            .+....++++||+|+++++++.              ...++..+.++|+|||.++++.+......++...+...
T Consensus        79 ------~~~~~~~~~~~D~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~  152 (180)
T 1ej0_A           79 ------ALLERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQGEGFDEYLREIRSL  152 (180)
T ss_dssp             ------HHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESSTTHHHHHHHHHHH
T ss_pred             ------hhhccCCCCceeEEEECCCccccCCCccchHHHHHHHHHHHHHHHHHcCCCcEEEEEEecCCcHHHHHHHHHHh
Confidence                  0000012468999999887531              15778999999999999999988888888888888776


Q ss_pred             ccccee
Q 026513          212 LEDILV  217 (237)
Q Consensus       212 ~~~~~~  217 (237)
                      |..+..
T Consensus       153 ~~~~~~  158 (180)
T 1ej0_A          153 FTKVKV  158 (180)
T ss_dssp             EEEEEE
T ss_pred             hhhEEe
Confidence            655443

>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A*

Probab=99.49  E-value=8.9e-14  Score=113.80  Aligned_cols=103  Identities=13%  Similarity=0.050  Sum_probs=79.9

Q ss_pred             ccCCCeEEEEcCcchHHHHHHHH-hCCCeEEEEeCC-HHHHHHH---HHHHHHcCCCCCcceEEeccCcccccccccccc
Q 026513           68 IKGGELFLDYGTGSGILGIAAIK-FGAAMSVGADID-PQAIKSA---HQNAALNNIGPKKMKLHLVPDRTFTASMNERVD  142 (237)
Q Consensus        68 ~~~~~~vLDlG~G~G~~~~~la~-~~~~~v~~vD~s-~~~i~~a---~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~  142 (237)
                      ..++.+|||+|||+|.++..+++ .+..+|+|+|+| +.+++.|   ++++...++.+    +.++++|..+.+      
T Consensus        22 ~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~~~----v~~~~~d~~~l~------   91 (225)
T 3p2e_A           22 GQFDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSKGGLSN----VVFVIAAAESLP------   91 (225)
T ss_dssp             TTCSEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGHHHHHHHTSCGGGTCCSS----EEEECCBTTBCC------
T ss_pred             CCCCCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHHcCCCC----eEEEEcCHHHhh------
Confidence            46788999999999999999985 356789999999 6666665   77777777765    888899876311      


Q ss_pred             ccccccccccccCCCCCCceeEEEEeCChHHH--------HHHHHHHhHhcCCCeEEEE
Q 026513          143 GVVEDLSSHKIRGISQTEKYDVVIANILLNPL--------LQLADHIVSYAKPGAVVGI  193 (237)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~fD~I~~n~~~~~~--------~~~l~~~~~~L~~gG~lii  193 (237)
                                  .. ....+|.|+++++....        ..++..+.++|||||.+++
T Consensus        92 ------------~~-~~d~v~~i~~~~~~~~~~~~~~~~~~~~l~~~~r~LkpGG~l~i  137 (225)
T 3p2e_A           92 ------------FE-LKNIADSISILFPWGTLLEYVIKPNRDILSNVADLAKKEAHFEF  137 (225)
T ss_dssp             ------------GG-GTTCEEEEEEESCCHHHHHHHHTTCHHHHHHHHTTEEEEEEEEE
T ss_pred             ------------hh-ccCeEEEEEEeCCCcHHhhhhhcchHHHHHHHHHhcCCCcEEEE
Confidence                        11 12578888888875432        3578999999999999999

>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*

Probab=99.48  E-value=1.4e-13  Score=120.92  Aligned_cols=102  Identities=18%  Similarity=0.166  Sum_probs=84.4

Q ss_pred             CCCeEEEEcCcchHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHHc---------------CCCCCcceEEeccCccc
Q 026513           70 GGELFLDYGTGSGILGIAAIKF-GAAMSVGADIDPQAIKSAHQNAALN---------------NIGPKKMKLHLVPDRTF  133 (237)
Q Consensus        70 ~~~~vLDlG~G~G~~~~~la~~-~~~~v~~vD~s~~~i~~a~~~~~~~---------------~~~~~~~~v~~~~~d~~  133 (237)
                      ++.+|||+|||+|.+++.++.. +..+|+++|+++.+++.+++|+..+               ++.+    +.++++|+.
T Consensus        47 ~~~~VLDl~aGtG~~~l~~a~~~~~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~~----i~v~~~Da~  122 (378)
T 2dul_A           47 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKT----IVINHDDAN  122 (378)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSE----EEEEESCHH
T ss_pred             CCCEEEECCCchhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCCc----eEEEcCcHH
Confidence            6889999999999999999876 6778999999999999999999998               6653    788899986


Q ss_pred             cccccccccccccccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEec
Q 026513          134 TASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISG  195 (237)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~  195 (237)
                      +..                 ...  ..+||+|++||+.. ...+++.+.+.|++||.++++|
T Consensus       123 ~~~-----------------~~~--~~~fD~I~lDP~~~-~~~~l~~a~~~lk~gG~l~vt~  164 (378)
T 2dul_A          123 RLM-----------------AER--HRYFHFIDLDPFGS-PMEFLDTALRSAKRRGILGVTA  164 (378)
T ss_dssp             HHH-----------------HHS--TTCEEEEEECCSSC-CHHHHHHHHHHEEEEEEEEEEE
T ss_pred             HHH-----------------Hhc--cCCCCEEEeCCCCC-HHHHHHHHHHhcCCCCEEEEEe
Confidence            321                 111  35799999998643 3578888999999999999975

>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}

Probab=99.48  E-value=3.7e-13  Score=107.28  Aligned_cols=133  Identities=16%  Similarity=0.259  Sum_probs=85.8

Q ss_pred             ccCCCeEEEEcCcchHHHHHHHHh-C--CCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccc-
Q 026513           68 IKGGELFLDYGTGSGILGIAAIKF-G--AAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDG-  143 (237)
Q Consensus        68 ~~~~~~vLDlG~G~G~~~~~la~~-~--~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~-  143 (237)
                      +.++.+|||+|||+|.++..+++. +  ..+|+|+|+|+.+           ...    .+.++++|+.+.... .+.. 
T Consensus        20 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~-----------~~~----~v~~~~~d~~~~~~~-~~~~~   83 (201)
T 2plw_A           20 LKKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMD-----------PIP----NVYFIQGEIGKDNMN-NIKNI   83 (201)
T ss_dssp             CCTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCC-----------CCT----TCEEEECCTTTTSSC-CC---
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccC-----------CCC----CceEEEccccchhhh-hhccc
Confidence            467889999999999999999875 4  5789999999932           122    266778887642200 0000 


Q ss_pred             -cccccc----cccccCCCCCCceeEEEEeCChHH--------H------HHHHHHHhHhcCCCeEEEEeccCCCCHHHH
Q 026513          144 -VVEDLS----SHKIRGISQTEKYDVVIANILLNP--------L------LQLADHIVSYAKPGAVVGISGILSEQLPHI  204 (237)
Q Consensus       144 -~~~~~~----~~~~~~~~~~~~fD~I~~n~~~~~--------~------~~~l~~~~~~L~~gG~liis~~~~~~~~~~  204 (237)
                       .++...    ...+....++.+||+|+++...+.        .      ..++..+.++|+|||.+++..+......++
T Consensus        84 ~~i~~~~~~~~~~~~~~~~~~~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~l  163 (201)
T 2plw_A           84 NYIDNMNNNSVDYKLKEILQDKKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQYINIGGTYIVKMYLGSQTNNL  163 (201)
T ss_dssp             --------CHHHHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECSTTHHHH
T ss_pred             cccccccchhhHHHHHhhcCCCcccEEEeCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEeCCCCHHHH
Confidence             000000    000000013468999999875321        1      236788999999999999987777777788


Q ss_pred             HHHHhhccccce
Q 026513          205 INRYSEFLEDIL  216 (237)
Q Consensus       205 ~~~~~~~~~~~~  216 (237)
                      ...+...|..+.
T Consensus       164 ~~~l~~~f~~v~  175 (201)
T 2plw_A          164 KTYLKGMFQLVH  175 (201)
T ss_dssp             HHHHHTTEEEEE
T ss_pred             HHHHHHHHheEE
Confidence            888776654443

>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}

Probab=99.48  E-value=6.5e-13  Score=120.04  Aligned_cols=104  Identities=13%  Similarity=0.146  Sum_probs=85.3

Q ss_pred             CCCeEEEEcCcchHHHHHHHHh--CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccc
Q 026513           70 GGELFLDYGTGSGILGIAAIKF--GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVED  147 (237)
Q Consensus        70 ~~~~vLDlG~G~G~~~~~la~~--~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  147 (237)
                      +|.+|||+|||+|..+..++..  +..+|+++|+|+.+++.+++|+...++.+    +.++++|..+..           
T Consensus       117 ~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g~~n----v~~~~~D~~~~~-----------  181 (479)
T 2frx_A          117 APQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGISN----VALTHFDGRVFG-----------  181 (479)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHTCCS----EEEECCCSTTHH-----------
T ss_pred             CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCc----EEEEeCCHHHhh-----------
Confidence            7899999999999999999875  34789999999999999999999999875    888899876311           


Q ss_pred             cccccccCCCCCCceeEEEEeCChH-------------------------HHHHHHHHHhHhcCCCeEEEEecc
Q 026513          148 LSSHKIRGISQTEKYDVVIANILLN-------------------------PLLQLADHIVSYAKPGAVVGISGI  196 (237)
Q Consensus       148 ~~~~~~~~~~~~~~fD~I~~n~~~~-------------------------~~~~~l~~~~~~L~~gG~liis~~  196 (237)
                             . ...++||+|++|+|..                         ...+++..+.++|+|||+|++++.
T Consensus       182 -------~-~~~~~fD~Il~D~PcSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~LvysTc  247 (479)
T 2frx_A          182 -------A-AVPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYSTC  247 (479)
T ss_dssp             -------H-HSTTCEEEEEEECCCCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEES
T ss_pred             -------h-hccccCCEEEECCCcCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCCCEEEEecc
Confidence                   1 0246899999998731                         124678999999999999999743

>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}

Probab=99.48  E-value=3e-13  Score=121.30  Aligned_cols=105  Identities=14%  Similarity=0.090  Sum_probs=86.0

Q ss_pred             ccCCCeEEEEcCcchHHHHHHHHh--CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccc
Q 026513           68 IKGGELFLDYGTGSGILGIAAIKF--GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVV  145 (237)
Q Consensus        68 ~~~~~~vLDlG~G~G~~~~~la~~--~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  145 (237)
                      ..+|.+|||+|||+|..+..++..  +..+|+++|+|+.+++.+++|+...++.+    +.++++|..+..         
T Consensus       103 ~~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g~~n----v~v~~~Da~~l~---------  169 (456)
T 3m4x_A          103 AKPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGVSN----AIVTNHAPAELV---------  169 (456)
T ss_dssp             CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHTCSS----EEEECCCHHHHH---------
T ss_pred             CCCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCc----eEEEeCCHHHhh---------
Confidence            467899999999999999998864  45789999999999999999999999875    888888875311         


Q ss_pred             cccccccccCCCCCCceeEEEEeCCh-------------------------HHHHHHHHHHhHhcCCCeEEEEec
Q 026513          146 EDLSSHKIRGISQTEKYDVVIANILL-------------------------NPLLQLADHIVSYAKPGAVVGISG  195 (237)
Q Consensus       146 ~~~~~~~~~~~~~~~~fD~I~~n~~~-------------------------~~~~~~l~~~~~~L~~gG~liis~  195 (237)
                               .. ..++||+|++|+|.                         ....+++..+.++|+|||.|++|+
T Consensus       170 ---------~~-~~~~FD~Il~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsT  234 (456)
T 3m4x_A          170 ---------PH-FSGFFDRIVVDAPCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNKGQLIYST  234 (456)
T ss_dssp             ---------HH-HTTCEEEEEEECCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             ---------hh-ccccCCEEEECCCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence                     10 14689999999982                         122377999999999999999873

>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*

Probab=99.48  E-value=1e-12  Score=114.69  Aligned_cols=102  Identities=17%  Similarity=0.158  Sum_probs=84.7

Q ss_pred             cCCCeEEEEcCcchHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccc
Q 026513           69 KGGELFLDYGTGSGILGIAAIKF-GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVED  147 (237)
Q Consensus        69 ~~~~~vLDlG~G~G~~~~~la~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  147 (237)
                      .++.+|||+|||+|.++..+++. +..+++++|+ +.+++.|++++...++..   ++.++.+|+.+             
T Consensus       181 ~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~~~---~v~~~~~d~~~-------------  243 (374)
T 1qzz_A          181 SAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGLAD---RVTVAEGDFFK-------------  243 (374)
T ss_dssp             TTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTT---TEEEEECCTTS-------------
T ss_pred             CCCCEEEEECCCcCHHHHHHHHHCCCCEEEEEeC-HHHHHHHHHHHHhcCCCC---ceEEEeCCCCC-------------
Confidence            46789999999999999999875 4568999999 999999999998888764   38888999763             


Q ss_pred             cccccccCCCCCCceeEEEEeCChHHH-----HHHHHHHhHhcCCCeEEEEecc
Q 026513          148 LSSHKIRGISQTEKYDVVIANILLNPL-----LQLADHIVSYAKPGAVVGISGI  196 (237)
Q Consensus       148 ~~~~~~~~~~~~~~fD~I~~n~~~~~~-----~~~l~~~~~~L~~gG~liis~~  196 (237)
                             .+  ...||+|+++.++++.     ..+++++.+.|+|||++++.+.
T Consensus       244 -------~~--~~~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~  288 (374)
T 1qzz_A          244 -------PL--PVTADVVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDR  288 (374)
T ss_dssp             -------CC--SCCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             -------cC--CCCCCEEEEeccccCCCHHHHHHHHHHHHHhcCCCcEEEEEec
Confidence                   11  2249999999887643     3689999999999999998765

>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7

Probab=99.47  E-value=4.9e-14  Score=114.94  Aligned_cols=112  Identities=20%  Similarity=0.304  Sum_probs=86.4

Q ss_pred             HHHHHHHHhhccCCCeEEEEcCcchHHHHHHHHh-CC------CeEEEEeCCHHHHHHHHHHHHHcC-----CCCCcceE
Q 026513           58 KLCLLLLRRLIKGGELFLDYGTGSGILGIAAIKF-GA------AMSVGADIDPQAIKSAHQNAALNN-----IGPKKMKL  125 (237)
Q Consensus        58 ~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~la~~-~~------~~v~~vD~s~~~i~~a~~~~~~~~-----~~~~~~~v  125 (237)
                      ..+++.+...+.++.+|||+|||+|.++..+++. +.      .+|+++|+++.+++.|++++...+     ..+    +
T Consensus        72 ~~~~~~l~~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~----v  147 (227)
T 1r18_A           72 AFALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQ----L  147 (227)
T ss_dssp             HHHHHHTTTTCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTS----E
T ss_pred             HHHHHHHHhhCCCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCc----e
Confidence            4444544434578899999999999999998874 42      589999999999999999987655     333    7


Q ss_pred             EeccCccccccccccccccccccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEecc
Q 026513          126 HLVPDRTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGI  196 (237)
Q Consensus       126 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~~  196 (237)
                      .++.+|..+                    .+...++||+|+++.+.+.   +.+.+.+.|+|||++++...
T Consensus       148 ~~~~~d~~~--------------------~~~~~~~fD~I~~~~~~~~---~~~~~~~~LkpgG~lvi~~~  195 (227)
T 1r18_A          148 LIVEGDGRK--------------------GYPPNAPYNAIHVGAAAPD---TPTELINQLASGGRLIVPVG  195 (227)
T ss_dssp             EEEESCGGG--------------------CCGGGCSEEEEEECSCBSS---CCHHHHHTEEEEEEEEEEES
T ss_pred             EEEECCccc--------------------CCCcCCCccEEEECCchHH---HHHHHHHHhcCCCEEEEEEe
Confidence            788888763                    1112368999999987764   34778899999999999754

>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*

Probab=99.47  E-value=9.6e-13  Score=113.34  Aligned_cols=102  Identities=17%  Similarity=0.133  Sum_probs=84.4

Q ss_pred             CCCeEEEEcCcchHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccccc
Q 026513           70 GGELFLDYGTGSGILGIAAIKF-GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDL  148 (237)
Q Consensus        70 ~~~~vLDlG~G~G~~~~~la~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~  148 (237)
                      ++.+|||+|||+|.++..+++. +..+++++|+ +.+++.|++++...++..   ++.++.+|+++              
T Consensus       169 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~---~v~~~~~d~~~--------------  230 (332)
T 3i53_A          169 ALGHVVDVGGGSGGLLSALLTAHEDLSGTVLDL-QGPASAAHRRFLDTGLSG---RAQVVVGSFFD--------------  230 (332)
T ss_dssp             GGSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTT---TEEEEECCTTS--------------
T ss_pred             CCCEEEEeCCChhHHHHHHHHHCCCCeEEEecC-HHHHHHHHHhhhhcCcCc---CeEEecCCCCC--------------
Confidence            4679999999999999998864 6678999999 999999999998887754   48899999762              


Q ss_pred             ccccccCCCCCCceeEEEEeCChHHH-----HHHHHHHhHhcCCCeEEEEeccC
Q 026513          149 SSHKIRGISQTEKYDVVIANILLNPL-----LQLADHIVSYAKPGAVVGISGIL  197 (237)
Q Consensus       149 ~~~~~~~~~~~~~fD~I~~n~~~~~~-----~~~l~~~~~~L~~gG~liis~~~  197 (237)
                            . .+. +||+|++...+++.     .++++++.+.|+|||++++.+..
T Consensus       231 ------~-~p~-~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~  276 (332)
T 3i53_A          231 ------P-LPA-GAGGYVLSAVLHDWDDLSAVAILRRCAEAAGSGGVVLVIEAV  276 (332)
T ss_dssp             ------C-CCC-SCSEEEEESCGGGSCHHHHHHHHHHHHHHHTTTCEEEEEECC
T ss_pred             ------C-CCC-CCcEEEEehhhccCCHHHHHHHHHHHHHhcCCCCEEEEEeec
Confidence                  1 122 89999998887643     46899999999999999997553

>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41

Probab=99.47  E-value=3.7e-13  Score=111.92  Aligned_cols=107  Identities=16%  Similarity=0.090  Sum_probs=81.9

Q ss_pred             HHHHHHHhhccCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccc
Q 026513           59 LCLLLLRRLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMN  138 (237)
Q Consensus        59 ~~~~~l~~~~~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~  138 (237)
                      .+...+...++++.+|||+|||+|.++..+++.+ .+++|+|+|+.+++.|+++..    .     . ++.+|..+.   
T Consensus        43 ~~~~~l~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~v~gvD~s~~~l~~a~~~~~----~-----~-~~~~d~~~~---  108 (260)
T 2avn_A           43 LIGSFLEEYLKNPCRVLDLGGGTGKWSLFLQERG-FEVVLVDPSKEMLEVAREKGV----K-----N-VVEAKAEDL---  108 (260)
T ss_dssp             HHHHHHHHHCCSCCEEEEETCTTCHHHHHHHTTT-CEEEEEESCHHHHHHHHHHTC----S-----C-EEECCTTSC---
T ss_pred             HHHHHHHHhcCCCCeEEEeCCCcCHHHHHHHHcC-CeEEEEeCCHHHHHHHHhhcC----C-----C-EEECcHHHC---
Confidence            3444555555678899999999999999999875 579999999999999987743    1     1 456665421   


Q ss_pred             ccccccccccccccccCCCCCCceeEEEEeCChHHH----HHHHHHHhHhcCCCeEEEEecc
Q 026513          139 ERVDGVVEDLSSHKIRGISQTEKYDVVIANILLNPL----LQLADHIVSYAKPGAVVGISGI  196 (237)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~~~~----~~~l~~~~~~L~~gG~liis~~  196 (237)
                                       ..++++||+|++..++.+.    ..+++++.++|+|||.++++..
T Consensus       109 -----------------~~~~~~fD~v~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  153 (260)
T 2avn_A          109 -----------------PFPSGAFEAVLALGDVLSYVENKDKAFSEIRRVLVPDGLLIATVD  153 (260)
T ss_dssp             -----------------CSCTTCEEEEEECSSHHHHCSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             -----------------CCCCCCEEEEEEcchhhhccccHHHHHHHHHHHcCCCeEEEEEeC
Confidence                             1235789999998765443    5789999999999999999744

>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}

Probab=99.47  E-value=6.9e-13  Score=114.02  Aligned_cols=104  Identities=21%  Similarity=0.309  Sum_probs=85.3

Q ss_pred             cCCCeEEEEcCcchHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccc
Q 026513           69 KGGELFLDYGTGSGILGIAAIKF-GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVED  147 (237)
Q Consensus        69 ~~~~~vLDlG~G~G~~~~~la~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  147 (237)
                      .++.+|||+|||+|.++..+++. +..+++++|++ .+++.|++++...++.+   ++.++.+|+.+.            
T Consensus       164 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~~~~~~~~~~---~v~~~~~d~~~~------------  227 (335)
T 2r3s_A          164 IEPLKVLDISASHGLFGIAVAQHNPNAEIFGVDWA-SVLEVAKENARIQGVAS---RYHTIAGSAFEV------------  227 (335)
T ss_dssp             CCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEECH-HHHHHHHHHHHHHTCGG---GEEEEESCTTTS------------
T ss_pred             CCCCEEEEECCCcCHHHHHHHHHCCCCeEEEEecH-HHHHHHHHHHHhcCCCc---ceEEEecccccC------------
Confidence            56789999999999999998865 56789999999 99999999998887654   488889998631            


Q ss_pred             cccccccCCCCCCceeEEEEeCChHHH-----HHHHHHHhHhcCCCeEEEEeccC
Q 026513          148 LSSHKIRGISQTEKYDVVIANILLNPL-----LQLADHIVSYAKPGAVVGISGIL  197 (237)
Q Consensus       148 ~~~~~~~~~~~~~~fD~I~~n~~~~~~-----~~~l~~~~~~L~~gG~liis~~~  197 (237)
                               .....||+|++..++++.     ..+++++.+.|+|||++++.+..
T Consensus       228 ---------~~~~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~  273 (335)
T 2r3s_A          228 ---------DYGNDYDLVLLPNFLHHFDVATCEQLLRKIKTALAVEGKVIVFDFI  273 (335)
T ss_dssp             ---------CCCSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred             ---------CCCCCCcEEEEcchhccCCHHHHHHHHHHHHHhCCCCcEEEEEeec
Confidence                     112359999998877654     47899999999999999987543

>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*

Probab=99.47  E-value=3.4e-13  Score=114.08  Aligned_cols=144  Identities=15%  Similarity=0.123  Sum_probs=98.9

Q ss_pred             cCCCeEEEEcCcchHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccc
Q 026513           69 KGGELFLDYGTGSGILGIAAIKF-GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVED  147 (237)
Q Consensus        69 ~~~~~vLDlG~G~G~~~~~la~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  147 (237)
                      +++.+|||+|||+|.++..+++. +..+++++|+|+.+++.|++++...+.....-++.++.+|..+..           
T Consensus        77 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l-----------  145 (283)
T 2i7c_A           77 KEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFL-----------  145 (283)
T ss_dssp             SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHH-----------
T ss_pred             CCCCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHH-----------
Confidence            45689999999999999999876 467899999999999999998754320000114788888876311           


Q ss_pred             cccccccCCCCCCceeEEEEeCChH-----HH--HHHHHHHhHhcCCCeEEEEecc---C-CCCHHHHHHHHhhccccce
Q 026513          148 LSSHKIRGISQTEKYDVVIANILLN-----PL--LQLADHIVSYAKPGAVVGISGI---L-SEQLPHIINRYSEFLEDIL  216 (237)
Q Consensus       148 ~~~~~~~~~~~~~~fD~I~~n~~~~-----~~--~~~l~~~~~~L~~gG~liis~~---~-~~~~~~~~~~~~~~~~~~~  216 (237)
                            ..  ..++||+|+++.+..     .+  .++++.+.+.|+|||++++...   . ......+...+++.|..+.
T Consensus       146 ------~~--~~~~fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~~l~~~F~~v~  217 (283)
T 2i7c_A          146 ------EN--VTNTYDVIIVDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQCESLWIHVGTIKNMIGYAKKLFKKVE  217 (283)
T ss_dssp             ------HH--CCSCEEEEEEECCCTTTGGGGGSSHHHHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHTTCSEEE
T ss_pred             ------Hh--CCCCceEEEEcCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEECCCcccCHHHHHHHHHHHHHHCCceE
Confidence                  01  146899999987421     11  5789999999999999999732   1 1223445555555555443


Q ss_pred             ee-------ecCCEEEEEEEEc
Q 026513          217 VS-------EMDDWTCVSGKKK  231 (237)
Q Consensus       217 ~~-------~~~~w~~~~~~~~  231 (237)
                      ..       ..+.|..+++.+.
T Consensus       218 ~~~~~vP~y~~g~~g~~~~s~~  239 (283)
T 2i7c_A          218 YANISIPTYPCGCIGILCCSKT  239 (283)
T ss_dssp             EEEEECTTSGGGEEEEEEEESS
T ss_pred             EEEEEcCCcCCCcEEEEEEeCC
Confidence            21       1355677777764

>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}

Probab=99.47  E-value=1.4e-12  Score=112.98  Aligned_cols=138  Identities=17%  Similarity=0.218  Sum_probs=103.5

Q ss_pred             CCeEEEEcCcchHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccccc
Q 026513           71 GELFLDYGTGSGILGIAAIKF-GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDLS  149 (237)
Q Consensus        71 ~~~vLDlG~G~G~~~~~la~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~  149 (237)
                      +.+|||+|||+|.++..+++. +..+++++|+ +.+++.|++++...++.+   ++.++.+|+++..             
T Consensus       180 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~---~v~~~~~d~~~~~-------------  242 (352)
T 3mcz_A          180 ARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDL-PTTRDAARKTIHAHDLGG---RVEFFEKNLLDAR-------------  242 (352)
T ss_dssp             CCEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTTCGG---GEEEEECCTTCGG-------------
T ss_pred             CCEEEEeCCCcCHHHHHHHHhCCCCeEEEEEC-HHHHHHHHHHHHhcCCCC---ceEEEeCCcccCc-------------
Confidence            789999999999999998865 6678999999 889999999998877754   5889999987421             


Q ss_pred             cccccCCCCCCceeEEEEeCChHHH-----HHHHHHHhHhcCCCeEEEEeccCC--------------------------
Q 026513          150 SHKIRGISQTEKYDVVIANILLNPL-----LQLADHIVSYAKPGAVVGISGILS--------------------------  198 (237)
Q Consensus       150 ~~~~~~~~~~~~fD~I~~n~~~~~~-----~~~l~~~~~~L~~gG~liis~~~~--------------------------  198 (237)
                           . ...+.||+|++...+++.     ..+++++.+.|+|||++++.+...                          
T Consensus       243 -----~-~~~~~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (352)
T 3mcz_A          243 -----N-FEGGAADVVMLNDCLHYFDAREAREVIGHAAGLVKPGGALLILTMTMNDDRVTPALSADFSLHMMVNTNHGEL  316 (352)
T ss_dssp             -----G-GTTCCEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEEECCCTTSSSSHHHHHHHHHHHHHSTTCCC
T ss_pred             -----c-cCCCCccEEEEecccccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCCchHHHhhHHHHhhCCCCCc
Confidence                 0 024579999998887643     578999999999999999964321                          


Q ss_pred             CCHHHHHHHHhh-ccccceeeecCCEEEEEEEEcc
Q 026513          199 EQLPHIINRYSE-FLEDILVSEMDDWTCVSGKKKR  232 (237)
Q Consensus       199 ~~~~~~~~~~~~-~~~~~~~~~~~~w~~~~~~~~~  232 (237)
                      ....++...+.+ +|+.++ ...+.|..+.++|+.
T Consensus       317 ~t~~e~~~ll~~aGf~~~~-~~~g~~~l~~a~kp~  350 (352)
T 3mcz_A          317 HPTPWIAGVVRDAGLAVGE-RSIGRYTLLIGQRSS  350 (352)
T ss_dssp             CCHHHHHHHHHHTTCEEEE-EEETTEEEEEEECCC
T ss_pred             CCHHHHHHHHHHCCCceee-eccCceEEEEEecCC
Confidence            113334444443 366666 346778888888754

>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32

Probab=99.47  E-value=3.8e-13  Score=107.41  Aligned_cols=94  Identities=29%  Similarity=0.411  Sum_probs=73.3

Q ss_pred             ccCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccc
Q 026513           68 IKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVED  147 (237)
Q Consensus        68 ~~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  147 (237)
                      ..++.+|||+|||+|.++..++..+..+|+|+|+|+.+++.|++++.     +    +.++++|+.+             
T Consensus        49 ~~~~~~vlD~gcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~-----~----~~~~~~d~~~-------------  106 (200)
T 1ne2_A           49 NIGGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNCG-----G----VNFMVADVSE-------------  106 (200)
T ss_dssp             SSBTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHHHHHHHCT-----T----SEEEECCGGG-------------
T ss_pred             CCCCCEEEEEeCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHhcC-----C----CEEEECcHHH-------------
Confidence            34678999999999999999998877789999999999999998865     2    6688888762             


Q ss_pred             cccccccCCCCCCceeEEEEeCChHHHH-----HHHHHHhHhcCCCeEEEEecc
Q 026513          148 LSSHKIRGISQTEKYDVVIANILLNPLL-----QLADHIVSYAKPGAVVGISGI  196 (237)
Q Consensus       148 ~~~~~~~~~~~~~~fD~I~~n~~~~~~~-----~~l~~~~~~L~~gG~liis~~  196 (237)
                              +  .++||+|++|+|+++..     .+++.+.+.+   |.+++++.
T Consensus       107 --------~--~~~~D~v~~~~p~~~~~~~~~~~~l~~~~~~~---g~~~~~~~  147 (200)
T 1ne2_A          107 --------I--SGKYDTWIMNPPFGSVVKHSDRAFIDKAFETS---MWIYSIGN  147 (200)
T ss_dssp             --------C--CCCEEEEEECCCC-------CHHHHHHHHHHE---EEEEEEEE
T ss_pred             --------C--CCCeeEEEECCCchhccCchhHHHHHHHHHhc---CcEEEEEc
Confidence                    2  26899999999986653     5677788877   55666553

>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}

Probab=99.47  E-value=5.2e-13  Score=125.68  Aligned_cols=128  Identities=15%  Similarity=0.191  Sum_probs=93.2

Q ss_pred             cccCCCCchhHHHHHHHHHhhc--cCCCeEEEEcCcchHHHHHHHHhCC--CeEEEEeCCHHHHHHHHHHHHHcCC--CC
Q 026513           47 LAFGSGEHATTKLCLLLLRRLI--KGGELFLDYGTGSGILGIAAIKFGA--AMSVGADIDPQAIKSAHQNAALNNI--GP  120 (237)
Q Consensus        47 ~~f~~g~~~~~~~~~~~l~~~~--~~~~~vLDlG~G~G~~~~~la~~~~--~~v~~vD~s~~~i~~a~~~~~~~~~--~~  120 (237)
                      +..+.-..+.....+..+...+  .++.+|||+|||+|.++..+++.+.  .+|+|+|+|+.+++.|++++.....  ..
T Consensus       696 me~gtFsPPL~eqRle~LLelL~~~~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~  775 (950)
T 3htx_A          696 MEAAFFKPPLSKQRVEYALKHIRESSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEAC  775 (950)
T ss_dssp             CCCCCSSSCHHHHHHHHHHHHHHHSCCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCS
T ss_pred             HhhCcCCchHHHHHHHHHHHHhcccCCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhc
Confidence            4444334566555555554432  4788999999999999999998753  6899999999999999997664311  01


Q ss_pred             CcceEEeccCccccccccccccccccccccccccCCCCCCceeEEEEeCChHHHH-----HHHHHHhHhcCCCeEEEEec
Q 026513          121 KKMKLHLVPDRTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLNPLL-----QLADHIVSYAKPGAVVGISG  195 (237)
Q Consensus       121 ~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~~~~~-----~~l~~~~~~L~~gG~liis~  195 (237)
                      ..-++.++++|+.+.                    ....++||+|+++.+++++.     .++..+.++|+|| .++++.
T Consensus       776 gl~nVefiqGDa~dL--------------------p~~d~sFDlVV~~eVLeHL~dp~l~~~L~eI~RvLKPG-~LIIST  834 (950)
T 3htx_A          776 NVKSATLYDGSILEF--------------------DSRLHDVDIGTCLEVIEHMEEDQACEFGEKVLSLFHPK-LLIVST  834 (950)
T ss_dssp             SCSEEEEEESCTTSC--------------------CTTSCSCCEEEEESCGGGSCHHHHHHHHHHHHHTTCCS-EEEEEE
T ss_pred             CCCceEEEECchHhC--------------------CcccCCeeEEEEeCchhhCChHHHHHHHHHHHHHcCCC-EEEEEe
Confidence            111588999998632                    12357899999999887753     4789999999999 777764

>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31

Probab=99.46  E-value=9.5e-13  Score=117.21  Aligned_cols=108  Identities=23%  Similarity=0.349  Sum_probs=82.9

Q ss_pred             ccCCCeEEEEcCcchHHHHHHHHh-CCCeEEEEeCCHHHHHHH-------HHHHHHcCC--CCCcceEEeccCccccccc
Q 026513           68 IKGGELFLDYGTGSGILGIAAIKF-GAAMSVGADIDPQAIKSA-------HQNAALNNI--GPKKMKLHLVPDRTFTASM  137 (237)
Q Consensus        68 ~~~~~~vLDlG~G~G~~~~~la~~-~~~~v~~vD~s~~~i~~a-------~~~~~~~~~--~~~~~~v~~~~~d~~~~~~  137 (237)
                      +.++.+|||+|||+|.+++.+++. +..+|+|+|+++.+++.|       ++++...++  .+    +.++++|..... 
T Consensus       240 l~~g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~n----V~~i~gD~~~~~-  314 (433)
T 1u2z_A          240 LKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNN----VEFSLKKSFVDN-  314 (433)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCC----EEEEESSCSTTC-
T ss_pred             CCCCCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCCCc----eEEEEcCccccc-
Confidence            467889999999999999999975 777899999999999999       888888774  43    777777543100 


Q ss_pred             cccccccccccccccccCC-CCCCceeEEEEeCCh--HHHHHHHHHHhHhcCCCeEEEEecc
Q 026513          138 NERVDGVVEDLSSHKIRGI-SQTEKYDVVIANILL--NPLLQLADHIVSYAKPGAVVGISGI  196 (237)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~-~~~~~fD~I~~n~~~--~~~~~~l~~~~~~L~~gG~liis~~  196 (237)
                                     . .+ ...++||+|+++..+  ......+.++.+.|+|||.+++...
T Consensus       315 ---------------~-~~~~~~~~FDvIvvn~~l~~~d~~~~L~el~r~LKpGG~lVi~d~  360 (433)
T 1u2z_A          315 ---------------N-RVAELIPQCDVILVNNFLFDEDLNKKVEKILQTAKVGCKIISLKS  360 (433)
T ss_dssp             ---------------H-HHHHHGGGCSEEEECCTTCCHHHHHHHHHHHTTCCTTCEEEESSC
T ss_pred             ---------------c-ccccccCCCCEEEEeCccccccHHHHHHHHHHhCCCCeEEEEeec
Confidence                           0 00 013589999997543  4455678999999999999999743

>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A

Probab=99.46  E-value=7.6e-13  Score=118.16  Aligned_cols=121  Identities=17%  Similarity=0.138  Sum_probs=90.6

Q ss_pred             ccCCCeEEEEcCcchHHHHHHHHhC-CCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccc
Q 026513           68 IKGGELFLDYGTGSGILGIAAIKFG-AAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVE  146 (237)
Q Consensus        68 ~~~~~~vLDlG~G~G~~~~~la~~~-~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  146 (237)
                      ..+|.+|||+|||+|..+..++... ..+|+++|+++.+++.+++++...++.     +.++++|..+..          
T Consensus       244 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l~~~~~~~~~~g~~-----~~~~~~D~~~~~----------  308 (429)
T 1sqg_A          244 PQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMK-----ATVKQGDGRYPS----------  308 (429)
T ss_dssp             CCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCC-----CEEEECCTTCTH----------
T ss_pred             CCCcCeEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHHcCCC-----eEEEeCchhhch----------
Confidence            4678899999999999999998763 478999999999999999999988864     567788875311          


Q ss_pred             ccccccccCCCCCCceeEEEEeCChH-------------------------HHHHHHHHHhHhcCCCeEEEEecc-C--C
Q 026513          147 DLSSHKIRGISQTEKYDVVIANILLN-------------------------PLLQLADHIVSYAKPGAVVGISGI-L--S  198 (237)
Q Consensus       147 ~~~~~~~~~~~~~~~fD~I~~n~~~~-------------------------~~~~~l~~~~~~L~~gG~liis~~-~--~  198 (237)
                              ...+.++||+|++|+|..                         ....++..+.++|+|||++++++. .  .
T Consensus       309 --------~~~~~~~fD~Vl~D~Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpGG~lvystcs~~~~  380 (429)
T 1sqg_A          309 --------QWCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSVLPE  380 (429)
T ss_dssp             --------HHHTTCCEEEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCCCGG
T ss_pred             --------hhcccCCCCEEEEeCCCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCChh
Confidence                    101246899999998731                         124779999999999999999743 3  2


Q ss_pred             CCHHHHHHHHhhc
Q 026513          199 EQLPHIINRYSEF  211 (237)
Q Consensus       199 ~~~~~~~~~~~~~  211 (237)
                      +....+...+..+
T Consensus       381 ene~~v~~~l~~~  393 (429)
T 1sqg_A          381 ENSLQIKAFLQRT  393 (429)
T ss_dssp             GTHHHHHHHHHHC
T ss_pred             hHHHHHHHHHHhC
Confidence            3334444555543

>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei}

Probab=99.46  E-value=5.8e-13  Score=111.23  Aligned_cols=109  Identities=21%  Similarity=0.223  Sum_probs=84.0

Q ss_pred             ccCCCeEEEEcCcchHHHHHHHHh-CC-CeEEEEeCCHH------HHHHHHHHHHHcCCCCCcceEEeccCc-ccccccc
Q 026513           68 IKGGELFLDYGTGSGILGIAAIKF-GA-AMSVGADIDPQ------AIKSAHQNAALNNIGPKKMKLHLVPDR-TFTASMN  138 (237)
Q Consensus        68 ~~~~~~vLDlG~G~G~~~~~la~~-~~-~~v~~vD~s~~------~i~~a~~~~~~~~~~~~~~~v~~~~~d-~~~~~~~  138 (237)
                      +.++.+|||+|||+|.++..+++. |. .+|+|+|+|+.      +++.|++++...++..   ++.++.+| .....  
T Consensus        41 ~~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~---~v~~~~~d~~~~~~--  115 (275)
T 3bkx_A           41 VKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGD---RLTVHFNTNLSDDL--  115 (275)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTGG---GEEEECSCCTTTCC--
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcCCCC---ceEEEECChhhhcc--
Confidence            467899999999999999999876 33 78999999997      9999999998877643   47888887 32100  


Q ss_pred             ccccccccccccccccCCCCCCceeEEEEeCChHHH---HHHHHHHhHhcCCCeEEEEeccC
Q 026513          139 ERVDGVVEDLSSHKIRGISQTEKYDVVIANILLNPL---LQLADHIVSYAKPGAVVGISGIL  197 (237)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~~~~---~~~l~~~~~~L~~gG~liis~~~  197 (237)
                                      ...++++||+|+++.++++.   ..+++.+..+++|||++++.++.
T Consensus       116 ----------------~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~l~~~gG~l~~~~~~  161 (275)
T 3bkx_A          116 ----------------GPIADQHFDRVVLAHSLWYFASANALALLFKNMAAVCDHVDVAEWS  161 (275)
T ss_dssp             ----------------GGGTTCCCSEEEEESCGGGSSCHHHHHHHHHHHTTTCSEEEEEEEC
T ss_pred             ----------------CCCCCCCEEEEEEccchhhCCCHHHHHHHHHHHhCCCCEEEEEEec
Confidence                            11235789999999987654   34667777777889999997553

>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}

Probab=99.45  E-value=7.7e-13  Score=106.78  Aligned_cols=101  Identities=23%  Similarity=0.284  Sum_probs=77.1

Q ss_pred             cCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccccc
Q 026513           69 KGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDL  148 (237)
Q Consensus        69 ~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~  148 (237)
                      .++.+|||+|||+|.++..+++.+ .+|+|+|+|+.+++.|+++   .       .+.+..+|..+..            
T Consensus        51 ~~~~~vLdiG~G~G~~~~~l~~~~-~~v~~vD~s~~~~~~a~~~---~-------~~~~~~~~~~~~~------------  107 (227)
T 3e8s_A           51 RQPERVLDLGCGEGWLLRALADRG-IEAVGVDGDRTLVDAARAA---G-------AGEVHLASYAQLA------------  107 (227)
T ss_dssp             TCCSEEEEETCTTCHHHHHHHTTT-CEEEEEESCHHHHHHHHHT---C-------SSCEEECCHHHHH------------
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHCC-CEEEEEcCCHHHHHHHHHh---c-------ccccchhhHHhhc------------
Confidence            456899999999999999999884 4799999999999999887   1       1445566654210            


Q ss_pred             ccccccCCCCCCceeEEEEeCChH--HHHHHHHHHhHhcCCCeEEEEecc
Q 026513          149 SSHKIRGISQTEKYDVVIANILLN--PLLQLADHIVSYAKPGAVVGISGI  196 (237)
Q Consensus       149 ~~~~~~~~~~~~~fD~I~~n~~~~--~~~~~l~~~~~~L~~gG~liis~~  196 (237)
                          ........+||+|+++.+++  ....+++.+.++|+|||+++++..
T Consensus       108 ----~~~~~~~~~fD~v~~~~~l~~~~~~~~l~~~~~~L~pgG~l~~~~~  153 (227)
T 3e8s_A          108 ----EAKVPVGKDYDLICANFALLHQDIIELLSAMRTLLVPGGALVIQTL  153 (227)
T ss_dssp             ----TTCSCCCCCEEEEEEESCCCSSCCHHHHHHHHHTEEEEEEEEEEEC
T ss_pred             ----ccccccCCCccEEEECchhhhhhHHHHHHHHHHHhCCCeEEEEEec
Confidence                00122345799999998876  224789999999999999999754

>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45

Probab=99.45  E-value=4.3e-13  Score=116.30  Aligned_cols=116  Identities=18%  Similarity=0.186  Sum_probs=88.9

Q ss_pred             CCCeEEEEcCcchHHHHHHHHhC-C-----CeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccc
Q 026513           70 GGELFLDYGTGSGILGIAAIKFG-A-----AMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDG  143 (237)
Q Consensus        70 ~~~~vLDlG~G~G~~~~~la~~~-~-----~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~  143 (237)
                      ++.+|||+|||+|.++..+++.. .     .+++|+|+++.+++.|+.++...++.     +.+.++|...         
T Consensus       130 ~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g~~-----~~i~~~D~l~---------  195 (344)
T 2f8l_A          130 KNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQK-----MTLLHQDGLA---------  195 (344)
T ss_dssp             SEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCC-----CEEEESCTTS---------
T ss_pred             CCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCCCC-----ceEEECCCCC---------
Confidence            56799999999999999888652 1     67999999999999999999888762     6677888753         


Q ss_pred             cccccccccccCCCCCCceeEEEEeCChHHH---------------------HHHHHHHhHhcCCCeEEEEec---c-CC
Q 026513          144 VVEDLSSHKIRGISQTEKYDVVIANILLNPL---------------------LQLADHIVSYAKPGAVVGISG---I-LS  198 (237)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~fD~I~~n~~~~~~---------------------~~~l~~~~~~L~~gG~liis~---~-~~  198 (237)
                                  .....+||+|++|||+...                     ..++..+.+.|+|||++++..   + ..
T Consensus       196 ------------~~~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~gG~~~~v~p~~~~~~  263 (344)
T 2f8l_A          196 ------------NLLVDPVDVVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPDAMFGT  263 (344)
T ss_dssp             ------------CCCCCCEEEEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEGGGGGS
T ss_pred             ------------ccccCCccEEEECCCCCCcCchhhhhhccccCCCCcchHHHHHHHHHHHHhCCCCEEEEEECchhcCC
Confidence                        1124689999999995321                     257899999999999998853   2 34


Q ss_pred             CCHHHHHHHHhhc
Q 026513          199 EQLPHIINRYSEF  211 (237)
Q Consensus       199 ~~~~~~~~~~~~~  211 (237)
                      .....+...+.+.
T Consensus       264 ~~~~~ir~~l~~~  276 (344)
T 2f8l_A          264 SDFAKVDKFIKKN  276 (344)
T ss_dssp             TTHHHHHHHHHHH
T ss_pred             chHHHHHHHHHhC
Confidence            4556666666543

>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*

Probab=99.45  E-value=1.2e-12  Score=113.89  Aligned_cols=103  Identities=16%  Similarity=0.209  Sum_probs=84.5

Q ss_pred             cCCCeEEEEcCcchHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccc
Q 026513           69 KGGELFLDYGTGSGILGIAAIKF-GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVED  147 (237)
Q Consensus        69 ~~~~~vLDlG~G~G~~~~~la~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  147 (237)
                      .++.+|||+|||+|.++..+++. +..+++++|+ +.+++.|++++...++..   ++.++.+|+++             
T Consensus       182 ~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~~~---~v~~~~~d~~~-------------  244 (360)
T 1tw3_A          182 TNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEGLSD---RVDVVEGDFFE-------------  244 (360)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTTCTT---TEEEEECCTTS-------------
T ss_pred             ccCcEEEEeCCcCcHHHHHHHHhCCCCEEEEecC-HHHHHHHHHHHHhcCCCC---ceEEEeCCCCC-------------
Confidence            46789999999999999998875 4568999999 999999999998888764   48888999763             


Q ss_pred             cccccccCCCCCCceeEEEEeCChHHH-----HHHHHHHhHhcCCCeEEEEeccC
Q 026513          148 LSSHKIRGISQTEKYDVVIANILLNPL-----LQLADHIVSYAKPGAVVGISGIL  197 (237)
Q Consensus       148 ~~~~~~~~~~~~~~fD~I~~n~~~~~~-----~~~l~~~~~~L~~gG~liis~~~  197 (237)
                             ..  ...||+|++..+++++     ..+++++.+.|+|||++++....
T Consensus       245 -------~~--~~~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~  290 (360)
T 1tw3_A          245 -------PL--PRKADAIILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHERD  290 (360)
T ss_dssp             -------CC--SSCEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred             -------CC--CCCccEEEEcccccCCCHHHHHHHHHHHHHhcCCCcEEEEEEEe
Confidence                   11  2349999998887543     36899999999999999987544

>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}

Probab=99.45  E-value=1.8e-13  Score=114.00  Aligned_cols=96  Identities=10%  Similarity=0.107  Sum_probs=78.2

Q ss_pred             cCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccccc
Q 026513           69 KGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDL  148 (237)
Q Consensus        69 ~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~  148 (237)
                      .++.+|||+|||+|.++..+++. ..+|+|+|+|+.+++.|+++.      +    +.++.+|+.+.             
T Consensus        33 ~~~~~vLDiGcG~G~~~~~l~~~-~~~v~gvD~s~~~~~~a~~~~------~----~~~~~~d~~~~-------------   88 (261)
T 3ege_A           33 PKGSVIADIGAGTGGYSVALANQ-GLFVYAVEPSIVMRQQAVVHP------Q----VEWFTGYAENL-------------   88 (261)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHTT-TCEEEEECSCHHHHHSSCCCT------T----EEEECCCTTSC-------------
T ss_pred             CCCCEEEEEcCcccHHHHHHHhC-CCEEEEEeCCHHHHHHHHhcc------C----CEEEECchhhC-------------
Confidence            57889999999999999999985 468999999999998876553      2    78888887631             


Q ss_pred             ccccccCCCCCCceeEEEEeCChHHH---HHHHHHHhHhcCCCeEEEEecc
Q 026513          149 SSHKIRGISQTEKYDVVIANILLNPL---LQLADHIVSYAKPGAVVGISGI  196 (237)
Q Consensus       149 ~~~~~~~~~~~~~fD~I~~n~~~~~~---~~~l~~~~~~L~~gG~liis~~  196 (237)
                             ..++++||+|+++.+++++   ..+++++.++|+ ||.+++..+
T Consensus        89 -------~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~Lk-gG~~~~~~~  131 (261)
T 3ege_A           89 -------ALPDKSVDGVISILAIHHFSHLEKSFQEMQRIIR-DGTIVLLTF  131 (261)
T ss_dssp             -------CSCTTCBSEEEEESCGGGCSSHHHHHHHHHHHBC-SSCEEEEEE
T ss_pred             -------CCCCCCEeEEEEcchHhhccCHHHHHHHHHHHhC-CcEEEEEEc
Confidence                   1235799999999988665   578999999999 998777533

>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*

Probab=99.45  E-value=5.3e-13  Score=119.88  Aligned_cols=103  Identities=16%  Similarity=0.138  Sum_probs=83.8

Q ss_pred             ccCCCeEEEEcCcchHHHHHHHHh--CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccc
Q 026513           68 IKGGELFLDYGTGSGILGIAAIKF--GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVV  145 (237)
Q Consensus        68 ~~~~~~vLDlG~G~G~~~~~la~~--~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  145 (237)
                      ..+|.+|||+|||+|..+..++..  +..+|+++|+|+.+++.+++|+...++.     +.++++|..+..         
T Consensus        99 ~~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~~-----v~~~~~Da~~l~---------  164 (464)
T 3m6w_A           99 PKPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGAP-----LAVTQAPPRALA---------  164 (464)
T ss_dssp             CCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCCC-----CEEECSCHHHHH---------
T ss_pred             cCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCe-----EEEEECCHHHhh---------
Confidence            467899999999999999999865  3468999999999999999999998875     567788875311         


Q ss_pred             cccccccccCCCCCCceeEEEEeCCh-------------------------HHHHHHHHHHhHhcCCCeEEEEe
Q 026513          146 EDLSSHKIRGISQTEKYDVVIANILL-------------------------NPLLQLADHIVSYAKPGAVVGIS  194 (237)
Q Consensus       146 ~~~~~~~~~~~~~~~~fD~I~~n~~~-------------------------~~~~~~l~~~~~~L~~gG~liis  194 (237)
                               .. ..++||+|++|+|.                         ....+++..+.++|+|||+|+++
T Consensus       165 ---------~~-~~~~FD~Il~D~PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~Lvys  228 (464)
T 3m6w_A          165 ---------EA-FGTYFHRVLLDAPCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYS  228 (464)
T ss_dssp             ---------HH-HCSCEEEEEEECCCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred             ---------hh-ccccCCEEEECCCcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEE
Confidence                     10 14689999999883                         11257899999999999999997

>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A*

Probab=99.45  E-value=4.8e-13  Score=110.72  Aligned_cols=133  Identities=15%  Similarity=0.117  Sum_probs=99.7

Q ss_pred             CCchhHHHHHHHHHhh-------ccCCCeEEEEcCcchHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcc
Q 026513           52 GEHATTKLCLLLLRRL-------IKGGELFLDYGTGSGILGIAAIKF-GAAMSVGADIDPQAIKSAHQNAALNNIGPKKM  123 (237)
Q Consensus        52 g~~~~~~~~~~~l~~~-------~~~~~~vLDlG~G~G~~~~~la~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~  123 (237)
                      +.|..++.++..+..+       +.+..+|||||||+|.+++.++.. +..+|+++|+|+.+++.+++++..+++.    
T Consensus       107 ~~H~STreRLp~lD~fY~~i~~~i~~p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~le~a~~~l~~~g~~----  182 (281)
T 3lcv_B          107 SVHISTRERLPHLDEFYRELFRHLPRPNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGFVDEALTRLNVP----  182 (281)
T ss_dssp             TTSHHHHHHGGGHHHHHHHHGGGSCCCSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHHHHHHHHHHHTTCC----
T ss_pred             hcCCCHHHHhHhHHHHHHHHHhccCCCceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhcCCC----
Confidence            5577888877777543       345679999999999999998865 7889999999999999999999998876    


Q ss_pred             eEEeccCccccccccccccccccccccccccCCCCCCceeEEEEeCChHHHHH-----HHHHHhHhcCCCeEEEEecc--
Q 026513          124 KLHLVPDRTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLNPLLQ-----LADHIVSYAKPGAVVGISGI--  196 (237)
Q Consensus       124 ~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~-----~l~~~~~~L~~gG~liis~~--  196 (237)
                       ..+...|..                     ...+.++||+++++-.++++.+     .+ ++...|+++|.++--..  
T Consensus       183 -~~~~v~D~~---------------------~~~p~~~~DvaL~lkti~~Le~q~kg~g~-~ll~aL~~~~vvVSfp~ks  239 (281)
T 3lcv_B          183 -HRTNVADLL---------------------EDRLDEPADVTLLLKTLPCLETQQRGSGW-EVIDIVNSPNIVVTFPTKS  239 (281)
T ss_dssp             -EEEEECCTT---------------------TSCCCSCCSEEEETTCHHHHHHHSTTHHH-HHHHHSSCSEEEEEEECC-
T ss_pred             -ceEEEeeec---------------------ccCCCCCcchHHHHHHHHHhhhhhhHHHH-HHHHHhCCCCEEEeccchh
Confidence             556667754                     2234679999999999988852     35 79999999999987655  


Q ss_pred             CCCCHHHHHHHHhhc
Q 026513          197 LSEQLPHIINRYSEF  211 (237)
Q Consensus       197 ~~~~~~~~~~~~~~~  211 (237)
                      +.-....+...|...
T Consensus       240 l~Grs~gm~~~Y~~~  254 (281)
T 3lcv_B          240 LGQRSKGMFQNYSQS  254 (281)
T ss_dssp             ------CHHHHHHHH
T ss_pred             hcCCCcchhhHHHHH
Confidence            444444555555443

>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*

Probab=99.43  E-value=4.1e-12  Score=110.59  Aligned_cols=102  Identities=19%  Similarity=0.237  Sum_probs=84.1

Q ss_pred             ccCCCeEEEEcCcchHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccc
Q 026513           68 IKGGELFLDYGTGSGILGIAAIKF-GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVE  146 (237)
Q Consensus        68 ~~~~~~vLDlG~G~G~~~~~la~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  146 (237)
                      ..++.+|||+|||+|.++..+++. +..+++++|+ +.+++.|++++...++.+   ++.++.+|+++.           
T Consensus       188 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~---~v~~~~~d~~~~-----------  252 (359)
T 1x19_A          188 LDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVAD---RMRGIAVDIYKE-----------  252 (359)
T ss_dssp             CTTCCEEEEESCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTTCTT---TEEEEECCTTTS-----------
T ss_pred             CCCCCEEEEECCcccHHHHHHHHHCCCCeEEEEec-HHHHHHHHHHHHhcCCCC---CEEEEeCccccC-----------
Confidence            356789999999999999999875 5668999999 999999999999887765   488889998731           


Q ss_pred             ccccccccCCCCCCceeEEEEeCChHH-----HHHHHHHHhHhcCCCeEEEEec
Q 026513          147 DLSSHKIRGISQTEKYDVVIANILLNP-----LLQLADHIVSYAKPGAVVGISG  195 (237)
Q Consensus       147 ~~~~~~~~~~~~~~~fD~I~~n~~~~~-----~~~~l~~~~~~L~~gG~liis~  195 (237)
                               .  -..+|+|++..++++     ..++++++.+.|+|||.+++..
T Consensus       253 ---------~--~~~~D~v~~~~vlh~~~d~~~~~~l~~~~~~L~pgG~l~i~e  295 (359)
T 1x19_A          253 ---------S--YPEADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILD  295 (359)
T ss_dssp             ---------C--CCCCSEEEEESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEE
T ss_pred             ---------C--CCCCCEEEEechhccCCHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence                     1  123499999888754     3567999999999999998865

>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans}

Probab=99.43  E-value=3e-12  Score=112.67  Aligned_cols=130  Identities=17%  Similarity=0.082  Sum_probs=91.8

Q ss_pred             ccCCCeEEEEcCcchHHHHHHHHhCC---------------------------------------CeEEEEeCCHHHHHH
Q 026513           68 IKGGELFLDYGTGSGILGIAAIKFGA---------------------------------------AMSVGADIDPQAIKS  108 (237)
Q Consensus        68 ~~~~~~vLDlG~G~G~~~~~la~~~~---------------------------------------~~v~~vD~s~~~i~~  108 (237)
                      ..++..++|++||+|++++.++..+.                                       .+++|+|+|+.+++.
T Consensus       192 ~~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~v~GvDid~~al~~  271 (384)
T 3ldg_A          192 WFPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLDISGFDFDGRMVEI  271 (384)
T ss_dssp             CCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHHHHHH
T ss_pred             CCCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCceEEEEECCHHHHHH
Confidence            35688999999999999998886422                                       359999999999999


Q ss_pred             HHHHHHHcCCCCCcceEEeccCccccccccccccccccccccccccCCCCCCceeEEEEeCChH-------HHHHHHHHH
Q 026513          109 AHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLN-------PLLQLADHI  181 (237)
Q Consensus       109 a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~~-------~~~~~l~~~  181 (237)
                      |++|+..+++.+   .+.+.++|+.+                     +....+||+|++|||+.       .+..+...+
T Consensus       272 Ar~Na~~~gl~~---~I~~~~~D~~~---------------------l~~~~~fD~Iv~NPPYG~rl~~~~~l~~ly~~l  327 (384)
T 3ldg_A          272 ARKNAREVGLED---VVKLKQMRLQD---------------------FKTNKINGVLISNPPYGERLLDDKAVDILYNEM  327 (384)
T ss_dssp             HHHHHHHTTCTT---TEEEEECCGGG---------------------CCCCCCSCEEEECCCCTTTTSCHHHHHHHHHHH
T ss_pred             HHHHHHHcCCCC---ceEEEECChHH---------------------CCccCCcCEEEECCchhhccCCHHHHHHHHHHH
Confidence            999999999875   48899999873                     22235899999999962       344555666


Q ss_pred             hHhcCC--CeEEEEeccCCCCHHHHHHHHhhccccceeeecCCEEE
Q 026513          182 VSYAKP--GAVVGISGILSEQLPHIINRYSEFLEDILVSEMDDWTC  225 (237)
Q Consensus       182 ~~~L~~--gG~liis~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~  225 (237)
                      .+.|++  ||.+++..-    ..++.+.+............|.-.|
T Consensus       328 g~~lk~~~g~~~~iit~----~~~l~~~~g~~~~~~~~l~nG~l~~  369 (384)
T 3ldg_A          328 GETFAPLKTWSQFILTN----DTDFEQKFGRKADKKRKLYNGSLKV  369 (384)
T ss_dssp             HHHHTTCTTSEEEEEES----CTTHHHHHTSCCSEEEEEEETTEEE
T ss_pred             HHHHhhCCCcEEEEEEC----CHHHHHHhCCCccceeEEecCCEEE
Confidence            666665  888877532    2335555553322233344555444

>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41

Probab=99.43  E-value=2.9e-12  Score=103.75  Aligned_cols=97  Identities=10%  Similarity=0.143  Sum_probs=75.9

Q ss_pred             HHHhhccCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccc
Q 026513           63 LLRRLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVD  142 (237)
Q Consensus        63 ~l~~~~~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~  142 (237)
                      .+.... ++.+|||+|||+|.++..++..     +|+|+|+.+++.++++    +       +.++.+|+.+.       
T Consensus        41 ~l~~~~-~~~~vLDiG~G~G~~~~~l~~~-----~~vD~s~~~~~~a~~~----~-------~~~~~~d~~~~-------   96 (219)
T 1vlm_A           41 AVKCLL-PEGRGVEIGVGTGRFAVPLKIK-----IGVEPSERMAEIARKR----G-------VFVLKGTAENL-------   96 (219)
T ss_dssp             HHHHHC-CSSCEEEETCTTSTTHHHHTCC-----EEEESCHHHHHHHHHT----T-------CEEEECBTTBC-------
T ss_pred             HHHHhC-CCCcEEEeCCCCCHHHHHHHHH-----hccCCCHHHHHHHHhc----C-------CEEEEcccccC-------
Confidence            344333 4889999999999998887654     9999999999999877    2       55667776521       


Q ss_pred             ccccccccccccCCCCCCceeEEEEeCChHHH---HHHHHHHhHhcCCCeEEEEecc
Q 026513          143 GVVEDLSSHKIRGISQTEKYDVVIANILLNPL---LQLADHIVSYAKPGAVVGISGI  196 (237)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~fD~I~~n~~~~~~---~~~l~~~~~~L~~gG~liis~~  196 (237)
                                   ..+.++||+|+++.+++++   ..+++.+.++|+|||.++++..
T Consensus        97 -------------~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~  140 (219)
T 1vlm_A           97 -------------PLKDESFDFALMVTTICFVDDPERALKEAYRILKKGGYLIVGIV  140 (219)
T ss_dssp             -------------CSCTTCEEEEEEESCGGGSSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             -------------CCCCCCeeEEEEcchHhhccCHHHHHHHHHHHcCCCcEEEEEEe
Confidence                         1235689999999887654   5789999999999999999744

>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A*

Probab=99.43  E-value=1.4e-11  Score=101.02  Aligned_cols=115  Identities=20%  Similarity=0.104  Sum_probs=91.5

Q ss_pred             CchhHHHHHHHHHhhc------cCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEE
Q 026513           53 EHATTKLCLLLLRRLI------KGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLH  126 (237)
Q Consensus        53 ~~~~~~~~~~~l~~~~------~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~  126 (237)
                      .|..|+.++..+....      .+..+|||+|||.|.++..+.  +..+|+|+|+|+.+++.+++++..++..     ..
T Consensus        82 ~H~STrerLp~ld~fY~~i~~~~~p~~VLDlGCG~gpLal~~~--~~~~y~a~DId~~~i~~ar~~~~~~g~~-----~~  154 (253)
T 3frh_A           82 LHASTKERLAELDTLYDFIFSAETPRRVLDIACGLNPLALYER--GIASVWGCDIHQGLGDVITPFAREKDWD-----FT  154 (253)
T ss_dssp             TSHHHHHHGGGHHHHHHHHTSSCCCSEEEEETCTTTHHHHHHT--TCSEEEEEESBHHHHHHHHHHHHHTTCE-----EE
T ss_pred             hCCCHHHHhhhHHHHHHHHhcCCCCCeEEEecCCccHHHHHhc--cCCeEEEEeCCHHHHHHHHHHHHhcCCC-----ce
Confidence            4788888777765541      456799999999999999887  7889999999999999999999888743     67


Q ss_pred             eccCccccccccccccccccccccccccCCCCCCceeEEEEeCChHHHHH----HHHHHhHhcCCCeEEEEec
Q 026513          127 LVPDRTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLNPLLQ----LADHIVSYAKPGAVVGISG  195 (237)
Q Consensus       127 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~----~l~~~~~~L~~gG~liis~  195 (237)
                      +..+|...                     ..+.++||+|+++-.++++.+    ..-++...|+++|.++--.
T Consensus       155 ~~v~D~~~---------------------~~~~~~~DvvLllk~lh~LE~q~~~~~~~ll~aL~~~~vvVsfP  206 (253)
T 3frh_A          155 FALQDVLC---------------------APPAEAGDLALIFKLLPLLEREQAGSAMALLQSLNTPRMAVSFP  206 (253)
T ss_dssp             EEECCTTT---------------------SCCCCBCSEEEEESCHHHHHHHSTTHHHHHHHHCBCSEEEEEEE
T ss_pred             EEEeeccc---------------------CCCCCCcchHHHHHHHHHhhhhchhhHHHHHHHhcCCCEEEEcC
Confidence            77888652                     223569999999998888753    2347888999998887644

>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}

Probab=99.42  E-value=2.1e-12  Score=113.78  Aligned_cols=103  Identities=20%  Similarity=0.248  Sum_probs=79.7

Q ss_pred             ccCCCeEEEEcCcchHHHHHHHHhCC---------------------------------------CeEEEEeCCHHHHHH
Q 026513           68 IKGGELFLDYGTGSGILGIAAIKFGA---------------------------------------AMSVGADIDPQAIKS  108 (237)
Q Consensus        68 ~~~~~~vLDlG~G~G~~~~~la~~~~---------------------------------------~~v~~vD~s~~~i~~  108 (237)
                      ..++.+|||++||+|++++.++..+.                                       .+|+|+|+|+.+++.
T Consensus       193 ~~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~~ai~~  272 (385)
T 3ldu_A          193 WKAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFKIYGYDIDEESIDI  272 (385)
T ss_dssp             CCTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCCEEEEESCHHHHHH
T ss_pred             CCCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCceEEEEECCHHHHHH
Confidence            35678999999999999998886532                                       469999999999999


Q ss_pred             HHHHHHHcCCCCCcceEEeccCccccccccccccccccccccccccCCCCCCceeEEEEeCChH-------HHHHHHHHH
Q 026513          109 AHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLN-------PLLQLADHI  181 (237)
Q Consensus       109 a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~~-------~~~~~l~~~  181 (237)
                      |++|+..+++..   .+.+.++|+.+                     +....+||+|++|||+.       .+..+...+
T Consensus       273 Ar~Na~~~gl~~---~i~~~~~D~~~---------------------l~~~~~~D~Iv~NPPyg~rl~~~~~l~~ly~~l  328 (385)
T 3ldu_A          273 ARENAEIAGVDE---YIEFNVGDATQ---------------------FKSEDEFGFIITNPPYGERLEDKDSVKQLYKEL  328 (385)
T ss_dssp             HHHHHHHHTCGG---GEEEEECCGGG---------------------CCCSCBSCEEEECCCCCCSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCCC---ceEEEECChhh---------------------cCcCCCCcEEEECCCCcCccCCHHHHHHHHHHH
Confidence            999999999864   48899999873                     22245899999999962       233455556


Q ss_pred             hHhcCC--CeEEEEe
Q 026513          182 VSYAKP--GAVVGIS  194 (237)
Q Consensus       182 ~~~L~~--gG~liis  194 (237)
                      .+.|++  |+.+++.
T Consensus       329 g~~lk~~~g~~~~ii  343 (385)
T 3ldu_A          329 GYAFRKLKNWSYYLI  343 (385)
T ss_dssp             HHHHHTSBSCEEEEE
T ss_pred             HHHHhhCCCCEEEEE
Confidence            566655  7777774

>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str}

Probab=99.42  E-value=1.2e-12  Score=115.54  Aligned_cols=103  Identities=26%  Similarity=0.272  Sum_probs=79.1

Q ss_pred             ccCCCeEEEEcCcchHHHHHHHHhCC---------------------------------------CeEEEEeCCHHHHHH
Q 026513           68 IKGGELFLDYGTGSGILGIAAIKFGA---------------------------------------AMSVGADIDPQAIKS  108 (237)
Q Consensus        68 ~~~~~~vLDlG~G~G~~~~~la~~~~---------------------------------------~~v~~vD~s~~~i~~  108 (237)
                      ..++.++||++||+|++++.++..+.                                       .+|+|+|+|+.+++.
T Consensus       199 ~~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~~al~~  278 (393)
T 3k0b_A          199 WHPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLNIIGGDIDARLIEI  278 (393)
T ss_dssp             CCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHHHHHH
T ss_pred             CCCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCceEEEEECCHHHHHH
Confidence            35678999999999999998886422                                       359999999999999


Q ss_pred             HHHHHHHcCCCCCcceEEeccCccccccccccccccccccccccccCCCCCCceeEEEEeCCh-------HHHHHHHHHH
Q 026513          109 AHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILL-------NPLLQLADHI  181 (237)
Q Consensus       109 a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~-------~~~~~~l~~~  181 (237)
                      |++|+..+++.+   .+.+.++|+.+                     +....+||+|++|||+       ..+..+...+
T Consensus       279 Ar~Na~~~gl~~---~I~~~~~D~~~---------------------~~~~~~fD~Iv~NPPYg~rl~~~~~l~~ly~~l  334 (393)
T 3k0b_A          279 AKQNAVEAGLGD---LITFRQLQVAD---------------------FQTEDEYGVVVANPPYGERLEDEEAVRQLYREM  334 (393)
T ss_dssp             HHHHHHHTTCTT---CSEEEECCGGG---------------------CCCCCCSCEEEECCCCCCSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCCC---ceEEEECChHh---------------------CCCCCCCCEEEECCCCccccCCchhHHHHHHHH
Confidence            999999999875   47888999873                     2224589999999996       2233455555


Q ss_pred             hHhcCC--CeEEEEe
Q 026513          182 VSYAKP--GAVVGIS  194 (237)
Q Consensus       182 ~~~L~~--gG~liis  194 (237)
                      .+.|++  ||.+++.
T Consensus       335 g~~lk~~~g~~~~ii  349 (393)
T 3k0b_A          335 GIVYKRMPTWSVYVL  349 (393)
T ss_dssp             HHHHHTCTTCEEEEE
T ss_pred             HHHHhcCCCCEEEEE
Confidence            555554  8888774

>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A

Probab=99.42  E-value=2.6e-12  Score=107.49  Aligned_cols=135  Identities=10%  Similarity=-0.055  Sum_probs=94.4

Q ss_pred             cCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHH--cCCCCCcceEEeccCcccccccccccccccc
Q 026513           69 KGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAAL--NNIGPKKMKLHLVPDRTFTASMNERVDGVVE  146 (237)
Q Consensus        69 ~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~--~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  146 (237)
                      +.+.+|||+|||+|.++..+++.+ .+|+++|+|+.+++.|++++..  .++.+.  ++.++.+|..+            
T Consensus        71 ~~~~~VL~iG~G~G~~~~~ll~~~-~~v~~veid~~~i~~ar~~~~~~~~~~~~~--rv~~~~~D~~~------------  135 (262)
T 2cmg_A           71 KELKEVLIVDGFDLELAHQLFKYD-THIDFVQADEKILDSFISFFPHFHEVKNNK--NFTHAKQLLDL------------  135 (262)
T ss_dssp             SCCCEEEEESSCCHHHHHHHTTSS-CEEEEECSCHHHHGGGTTTSTTHHHHHTCT--TEEEESSGGGS------------
T ss_pred             CCCCEEEEEeCCcCHHHHHHHhCC-CEEEEEECCHHHHHHHHHHHHhhccccCCC--eEEEEechHHH------------
Confidence            456799999999999999888776 8999999999999999987532  111111  37788888762            


Q ss_pred             ccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEec-cCCCC---HHHHHHHHhhccccceeee---
Q 026513          147 DLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISG-ILSEQ---LPHIINRYSEFLEDILVSE---  219 (237)
Q Consensus       147 ~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~-~~~~~---~~~~~~~~~~~~~~~~~~~---  219 (237)
                               ..  ++||+|+++..-..  .+++.+.+.|+|||.+++.. .....   ...+...++..|.......   
T Consensus       136 ---------~~--~~fD~Ii~d~~dp~--~~~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~~l~~~F~~~~~~~~~v  202 (262)
T 2cmg_A          136 ---------DI--KKYDLIFCLQEPDI--HRIDGLKRMLKEDGVFISVAKHPLLEHVSMQNALKNMGGVFSVAMPFVAPL  202 (262)
T ss_dssp             ---------CC--CCEEEEEESSCCCH--HHHHHHHTTEEEEEEEEEEEECTTTCHHHHHHHHHHHHTTCSEEEEECCTT
T ss_pred             ---------HH--hhCCEEEECCCChH--HHHHHHHHhcCCCcEEEEEcCCcccCHHHHHHHHHHHHHhCCceEEEEEcc
Confidence                     21  68999999864322  37899999999999999952 22112   3344444454454443322   


Q ss_pred             --cCCEEEEEEEEc
Q 026513          220 --MDDWTCVSGKKK  231 (237)
Q Consensus       220 --~~~w~~~~~~~~  231 (237)
                        .+.|..++++|+
T Consensus       203 P~~g~~~~~~as~~  216 (262)
T 2cmg_A          203 RILSNKGYIYASFK  216 (262)
T ss_dssp             CTTCCEEEEEEESS
T ss_pred             CCCcccEEEEeeCC
Confidence              467887787764

>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP}

Probab=99.41  E-value=5.3e-13  Score=107.88  Aligned_cols=102  Identities=15%  Similarity=0.170  Sum_probs=76.5

Q ss_pred             ccCCCeEEEEcCcchHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHH----HHHcCCCCCcceEEeccCcccccccccccc
Q 026513           68 IKGGELFLDYGTGSGILGIAAIKF-GAAMSVGADIDPQAIKSAHQN----AALNNIGPKKMKLHLVPDRTFTASMNERVD  142 (237)
Q Consensus        68 ~~~~~~vLDlG~G~G~~~~~la~~-~~~~v~~vD~s~~~i~~a~~~----~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~  142 (237)
                      ..++.+|||+|||+|.++..+++. +..+|+|+|+|+.+++.+.+.    ....++.+    +.++++|+.+..      
T Consensus        25 ~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~~~----v~~~~~d~~~l~------   94 (218)
T 3mq2_A           25 SQYDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKPAKGGLPN----LLYLWATAERLP------   94 (218)
T ss_dssp             TTSSEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGGHHHHHHHTSCGGGTCCTT----EEEEECCSTTCC------
T ss_pred             ccCCCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhhhhcCCCc----eEEEecchhhCC------
Confidence            467889999999999999999976 467899999999988864333    33445544    888899886311      


Q ss_pred             ccccccccccccCCCCCCceeEEEEeCChHH-----H---HHHHHHHhHhcCCCeEEEEe
Q 026513          143 GVVEDLSSHKIRGISQTEKYDVVIANILLNP-----L---LQLADHIVSYAKPGAVVGIS  194 (237)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~fD~I~~n~~~~~-----~---~~~l~~~~~~L~~gG~liis  194 (237)
                                    ..... |.+++..+...     +   ..+++.+.++|||||.++++
T Consensus        95 --------------~~~~~-d~v~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~  139 (218)
T 3mq2_A           95 --------------PLSGV-GELHVLMPWGSLLRGVLGSSPEMLRGMAAVCRPGASFLVA  139 (218)
T ss_dssp             --------------SCCCE-EEEEEESCCHHHHHHHHTSSSHHHHHHHHTEEEEEEEEEE
T ss_pred             --------------CCCCC-CEEEEEccchhhhhhhhccHHHHHHHHHHHcCCCcEEEEE
Confidence                          12344 77776665432     2   57899999999999999995

>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}

Probab=99.41  E-value=3.2e-12  Score=111.60  Aligned_cols=105  Identities=13%  Similarity=0.158  Sum_probs=84.5

Q ss_pred             cCCCeEEEEcCcchHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccc
Q 026513           69 KGGELFLDYGTGSGILGIAAIKF-GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVED  147 (237)
Q Consensus        69 ~~~~~vLDlG~G~G~~~~~la~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  147 (237)
                      .+..+|||+|||+|.++..+++. +..+++++|+ +.+++.|++++...++..   ++.++.+|+++..           
T Consensus       178 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~---~v~~~~~d~~~~~-----------  242 (363)
T 3dp7_A          178 HHPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDL-PQQLEMMRKQTAGLSGSE---RIHGHGANLLDRD-----------  242 (363)
T ss_dssp             GCCSEEEEESCTTCHHHHHHHHHSTTCEEEEEEC-HHHHHHHHHHHTTCTTGG---GEEEEECCCCSSS-----------
T ss_pred             cCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeC-HHHHHHHHHHHHhcCccc---ceEEEEccccccC-----------
Confidence            45679999999999999998864 5678999999 999999999988777644   5889999987310           


Q ss_pred             cccccccCCCCCCceeEEEEeCChHHH-----HHHHHHHhHhcCCCeEEEEecc
Q 026513          148 LSSHKIRGISQTEKYDVVIANILLNPL-----LQLADHIVSYAKPGAVVGISGI  196 (237)
Q Consensus       148 ~~~~~~~~~~~~~~fD~I~~n~~~~~~-----~~~l~~~~~~L~~gG~liis~~  196 (237)
                             ... .++||+|++...++..     ..+++++.+.|+|||.+++.+.
T Consensus       243 -------~~~-p~~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~  288 (363)
T 3dp7_A          243 -------VPF-PTGFDAVWMSQFLDCFSEEEVISILTRVAQSIGKDSKVYIMET  288 (363)
T ss_dssp             -------CCC-CCCCSEEEEESCSTTSCHHHHHHHHHHHHHHCCTTCEEEEEEC
T ss_pred             -------CCC-CCCcCEEEEechhhhCCHHHHHHHHHHHHHhcCCCcEEEEEee
Confidence                   011 2689999998877532     4679999999999999998654

>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus}

Probab=99.40  E-value=1.2e-12  Score=105.76  Aligned_cols=98  Identities=28%  Similarity=0.290  Sum_probs=77.7

Q ss_pred             cCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccccc
Q 026513           69 KGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDL  148 (237)
Q Consensus        69 ~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~  148 (237)
                      .++.+|||+|||+|.++..++..+ .+++|+|+|+.+++.++++.           ..++.+|+.+..            
T Consensus        31 ~~~~~vLdiG~G~G~~~~~l~~~~-~~~~~~D~~~~~~~~~~~~~-----------~~~~~~d~~~~~------------   86 (230)
T 3cc8_A           31 KEWKEVLDIGCSSGALGAAIKENG-TRVSGIEAFPEAAEQAKEKL-----------DHVVLGDIETMD------------   86 (230)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHTTT-CEEEEEESSHHHHHHHHTTS-----------SEEEESCTTTCC------------
T ss_pred             cCCCcEEEeCCCCCHHHHHHHhcC-CeEEEEeCCHHHHHHHHHhC-----------CcEEEcchhhcC------------
Confidence            467899999999999999999885 78999999999999888653           135566654210            


Q ss_pred             ccccccCCCCCCceeEEEEeCChHHH---HHHHHHHhHhcCCCeEEEEecc
Q 026513          149 SSHKIRGISQTEKYDVVIANILLNPL---LQLADHIVSYAKPGAVVGISGI  196 (237)
Q Consensus       149 ~~~~~~~~~~~~~fD~I~~n~~~~~~---~~~l~~~~~~L~~gG~liis~~  196 (237)
                            ...++++||+|+++.+++++   ..++..+.++|+|||.++++..
T Consensus        87 ------~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~~gG~l~~~~~  131 (230)
T 3cc8_A           87 ------MPYEEEQFDCVIFGDVLEHLFDPWAVIEKVKPYIKQNGVILASIP  131 (230)
T ss_dssp             ------CCSCTTCEEEEEEESCGGGSSCHHHHHHHTGGGEEEEEEEEEEEE
T ss_pred             ------CCCCCCccCEEEECChhhhcCCHHHHHHHHHHHcCCCCEEEEEeC
Confidence                  11235789999999887665   5789999999999999999754

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=99.40  E-value=9.2e-13  Score=121.59  Aligned_cols=106  Identities=17%  Similarity=0.189  Sum_probs=83.7

Q ss_pred             ccCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccc
Q 026513           68 IKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVED  147 (237)
Q Consensus        68 ~~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  147 (237)
                      +..+.+|||||||.|.++..+|+.|+ +|+|+|.++.+|+.|+..+...+..    .+.+.++++.+             
T Consensus        64 ~~~~~~vLDvGCG~G~~~~~la~~ga-~V~giD~~~~~i~~a~~~a~~~~~~----~~~~~~~~~~~-------------  125 (569)
T 4azs_A           64 LGRPLNVLDLGCAQGFFSLSLASKGA-TIVGIDFQQENINVCRALAEENPDF----AAEFRVGRIEE-------------  125 (569)
T ss_dssp             HTSCCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTSTTS----EEEEEECCHHH-------------
T ss_pred             cCCCCeEEEECCCCcHHHHHHHhCCC-EEEEECCCHHHHHHHHHHHHhcCCC----ceEEEECCHHH-------------
Confidence            45678999999999999999999975 5999999999999999999887754    38888888752             


Q ss_pred             cccccccCCCCCCceeEEEEeCChHHHHHH-----HHHHhHhcCCCeEEEEecc
Q 026513          148 LSSHKIRGISQTEKYDVVIANILLNPLLQL-----ADHIVSYAKPGAVVGISGI  196 (237)
Q Consensus       148 ~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~-----l~~~~~~L~~gG~liis~~  196 (237)
                           +.....+++||+|+|..+++|+...     +..+.+.|+++|..++..+
T Consensus       126 -----~~~~~~~~~fD~v~~~e~~ehv~~~~~~~~~~~~~~tl~~~~~~~~~~~  174 (569)
T 4azs_A          126 -----VIAALEEGEFDLAIGLSVFHHIVHLHGIDEVKRLLSRLADVTQAVILEL  174 (569)
T ss_dssp             -----HHHHCCTTSCSEEEEESCHHHHHHHHCHHHHHHHHHHHHHHSSEEEEEC
T ss_pred             -----HhhhccCCCccEEEECcchhcCCCHHHHHHHHHHHHHhccccceeeEEe
Confidence                 1111225789999999999887532     4556677888888777654

>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}

Probab=99.40  E-value=3.9e-13  Score=106.62  Aligned_cols=122  Identities=18%  Similarity=0.256  Sum_probs=84.9

Q ss_pred             ccCCCeEEEEcCcchHHHHHHHHh-CC---------CeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEec-cCcccccc
Q 026513           68 IKGGELFLDYGTGSGILGIAAIKF-GA---------AMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLV-PDRTFTAS  136 (237)
Q Consensus        68 ~~~~~~vLDlG~G~G~~~~~la~~-~~---------~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~-~~d~~~~~  136 (237)
                      +.++.+|||+|||+|.++..+++. +.         .+|+|+|+|+.+           .+.+    +.++ .+|+.+..
T Consensus        20 ~~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~-----------~~~~----~~~~~~~d~~~~~   84 (196)
T 2nyu_A           20 LRPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF-----------PLEG----ATFLCPADVTDPR   84 (196)
T ss_dssp             CCTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCC-----------CCTT----CEEECSCCTTSHH
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcc-----------cCCC----CeEEEeccCCCHH
Confidence            577899999999999999999876 54         789999999942           1222    6677 77765321


Q ss_pred             ccccccccccccccccccCCCCCCceeEEEEeCChH--------HH------HHHHHHHhHhcCCCeEEEEeccCCCCHH
Q 026513          137 MNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLN--------PL------LQLADHIVSYAKPGAVVGISGILSEQLP  202 (237)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~~--------~~------~~~l~~~~~~L~~gG~liis~~~~~~~~  202 (237)
                      ..+.            .....++.+||+|+++.+.+        ..      ..++..+.++|+|||.+++..+......
T Consensus        85 ~~~~------------~~~~~~~~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~  152 (196)
T 2nyu_A           85 TSQR------------ILEVLPGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKTWAGSQSR  152 (196)
T ss_dssp             HHHH------------HHHHSGGGCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCSGGGH
T ss_pred             HHHH------------HHHhcCCCCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEEEecCCccHH
Confidence            1000            00011235899999976421        11      3678899999999999999877776677


Q ss_pred             HHHHHHhhccccce
Q 026513          203 HIINRYSEFLEDIL  216 (237)
Q Consensus       203 ~~~~~~~~~~~~~~  216 (237)
                      ++...+...|..+.
T Consensus       153 ~~~~~l~~~f~~v~  166 (196)
T 2nyu_A          153 RLQRRLTEEFQNVR  166 (196)
T ss_dssp             HHHHHHHHHEEEEE
T ss_pred             HHHHHHHHHhcceE
Confidence            77777766554443

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33

Probab=99.40  E-value=1.5e-12  Score=108.54  Aligned_cols=115  Identities=19%  Similarity=0.185  Sum_probs=84.3

Q ss_pred             HHHHHHHHhhc-cCCCeEEEEcCcchHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccc
Q 026513           58 KLCLLLLRRLI-KGGELFLDYGTGSGILGIAAIKF-GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTA  135 (237)
Q Consensus        58 ~~~~~~l~~~~-~~~~~vLDlG~G~G~~~~~la~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~  135 (237)
                      ..+...+...+ .++.+|||+|||+|.++..+++. +..+|+|+|+|+.+++.|+++.     .    ++.+..+|..+.
T Consensus        72 ~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~-----~----~~~~~~~d~~~~  142 (269)
T 1p91_A           72 DAIVAQLRERLDDKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRY-----P----QVTFCVASSHRL  142 (269)
T ss_dssp             HHHHHHHHHHSCTTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHC-----T----TSEEEECCTTSC
T ss_pred             HHHHHHHHHhcCCCCCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHhC-----C----CcEEEEcchhhC
Confidence            33444444433 57889999999999999999876 4568999999999999998763     1    155667776521


Q ss_pred             cccccccccccccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEeccCCCCHHHHH
Q 026513          136 SMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILSEQLPHII  205 (237)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~~~~~~~~~~~  205 (237)
                                          ...+++||+|+++.+..    .+..+.++|+|||.+++.........++.
T Consensus       143 --------------------~~~~~~fD~v~~~~~~~----~l~~~~~~L~pgG~l~~~~~~~~~~~~~~  188 (269)
T 1p91_A          143 --------------------PFSDTSMDAIIRIYAPC----KAEELARVVKPGGWVITATPGPRHLMELK  188 (269)
T ss_dssp             --------------------SBCTTCEEEEEEESCCC----CHHHHHHHEEEEEEEEEEEECTTTTHHHH
T ss_pred             --------------------CCCCCceeEEEEeCChh----hHHHHHHhcCCCcEEEEEEcCHHHHHHHH
Confidence                                12356899999977633    46888999999999999866555444443

>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}

Probab=99.39  E-value=5.4e-13  Score=112.92  Aligned_cols=100  Identities=10%  Similarity=0.080  Sum_probs=75.0

Q ss_pred             cCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEE-eccCccccccccccccccccc
Q 026513           69 KGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLH-LVPDRTFTASMNERVDGVVED  147 (237)
Q Consensus        69 ~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~-~~~~d~~~~~~~~~~~~~~~~  147 (237)
                      .+|.+|||+|||+|.++..+++.|+.+|+|+|+|+.|++.+.++   +.      ++. +...|+....           
T Consensus        84 ~~g~~vLDiGcGTG~~t~~L~~~ga~~V~aVDvs~~mL~~a~r~---~~------rv~~~~~~ni~~l~-----------  143 (291)
T 3hp7_A           84 VEDMITIDIGASTGGFTDVMLQNGAKLVYAVDVGTNQLVWKLRQ---DD------RVRSMEQYNFRYAE-----------  143 (291)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSSSCSCHHHHT---CT------TEEEECSCCGGGCC-----------
T ss_pred             ccccEEEecCCCccHHHHHHHhCCCCEEEEEECCHHHHHHHHHh---Cc------ccceecccCceecc-----------
Confidence            36789999999999999999988888999999999999885432   11      121 2223332100           


Q ss_pred             cccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEe
Q 026513          148 LSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGIS  194 (237)
Q Consensus       148 ~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis  194 (237)
                           ...+ +..+||+|+++..++.+..++..+.++|+|||.+++.
T Consensus       144 -----~~~l-~~~~fD~v~~d~sf~sl~~vL~e~~rvLkpGG~lv~l  184 (291)
T 3hp7_A          144 -----PVDF-TEGLPSFASIDVSFISLNLILPALAKILVDGGQVVAL  184 (291)
T ss_dssp             -----GGGC-TTCCCSEEEECCSSSCGGGTHHHHHHHSCTTCEEEEE
T ss_pred             -----hhhC-CCCCCCEEEEEeeHhhHHHHHHHHHHHcCcCCEEEEE
Confidence                 0011 2345999999999888889999999999999999986

>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A*

Probab=99.39  E-value=6.8e-13  Score=109.28  Aligned_cols=102  Identities=9%  Similarity=0.021  Sum_probs=76.7

Q ss_pred             CCCeEEEEcCcchHHHHHHHHh-----CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccc
Q 026513           70 GGELFLDYGTGSGILGIAAIKF-----GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGV  144 (237)
Q Consensus        70 ~~~~vLDlG~G~G~~~~~la~~-----~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~  144 (237)
                      ++.+|||+|||+|..+..+++.     +..+|+|+|+|+.+++.|+.    .. .    ++.++++|..+...       
T Consensus        81 ~~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~~----~~-~----~v~~~~gD~~~~~~-------  144 (236)
T 2bm8_A           81 RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPAS----DM-E----NITLHQGDCSDLTT-------  144 (236)
T ss_dssp             CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGG----GC-T----TEEEEECCSSCSGG-------
T ss_pred             CCCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHhc----cC-C----ceEEEECcchhHHH-------
Confidence            4679999999999999999875     46789999999999988871    11 2    38888999863200       


Q ss_pred             ccccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhH-hcCCCeEEEEecc
Q 026513          145 VEDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVS-YAKPGAVVGISGI  196 (237)
Q Consensus       145 ~~~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~-~L~~gG~liis~~  196 (237)
                              + ......+||+|+++..-.....++..+.+ +|+|||++++.++
T Consensus       145 --------l-~~~~~~~fD~I~~d~~~~~~~~~l~~~~r~~LkpGG~lv~~d~  188 (236)
T 2bm8_A          145 --------F-EHLREMAHPLIFIDNAHANTFNIMKWAVDHLLEEGDYFIIEDM  188 (236)
T ss_dssp             --------G-GGGSSSCSSEEEEESSCSSHHHHHHHHHHHTCCTTCEEEECSC
T ss_pred             --------H-HhhccCCCCEEEECCchHhHHHHHHHHHHhhCCCCCEEEEEeC
Confidence                    0 01113479999998764445678888996 9999999999753

>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24

Probab=99.39  E-value=1.1e-12  Score=110.99  Aligned_cols=99  Identities=17%  Similarity=0.324  Sum_probs=77.2

Q ss_pred             ccCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccc
Q 026513           68 IKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVED  147 (237)
Q Consensus        68 ~~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  147 (237)
                      ..++.+|||+|||+|.++..+++.+ .+|+|+|+|+.+++.+++++...+...   ++.++++|+.+             
T Consensus        26 ~~~~~~VLDiG~G~G~lt~~L~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~---~v~~~~~D~~~-------------   88 (285)
T 1zq9_A           26 LRPTDVVLEVGPGTGNMTVKLLEKA-KKVVACELDPRLVAELHKRVQGTPVAS---KLQVLVGDVLK-------------   88 (285)
T ss_dssp             CCTTCEEEEECCTTSTTHHHHHHHS-SEEEEEESCHHHHHHHHHHHTTSTTGG---GEEEEESCTTT-------------
T ss_pred             CCCCCEEEEEcCcccHHHHHHHhhC-CEEEEEECCHHHHHHHHHHHHhcCCCC---ceEEEEcceec-------------
Confidence            4578899999999999999999884 579999999999999999987665422   38888999763             


Q ss_pred             cccccccCCCCCCceeEEEEeCChHHHHHHHHHH--------------------hHhcCCCeEEE
Q 026513          148 LSSHKIRGISQTEKYDVVIANILLNPLLQLADHI--------------------VSYAKPGAVVG  192 (237)
Q Consensus       148 ~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~--------------------~~~L~~gG~li  192 (237)
                              .. -.+||+|++|.|++....++..+                    ...++|||.+|
T Consensus        89 --------~~-~~~fD~vv~nlpy~~~~~~~~~~l~~~~~~~~~~~m~qkEva~r~vlkPGg~~y  144 (285)
T 1zq9_A           89 --------TD-LPFFDTCVANLPYQISSPFVFKLLLHRPFFRCAILMFQREFALRLVAKPGDKLY  144 (285)
T ss_dssp             --------SC-CCCCSEEEEECCGGGHHHHHHHHHHCSSCCSEEEEEEEHHHHHHHHCCTTCTTC
T ss_pred             --------cc-chhhcEEEEecCcccchHHHHHHHhcCcchhhhhhhhhHHHHHHHhcCCCCccc
Confidence                    11 23799999999987665544333                    24789999875

>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}

Probab=99.38  E-value=1.4e-11  Score=105.98  Aligned_cols=99  Identities=21%  Similarity=0.202  Sum_probs=82.1

Q ss_pred             CeEEEEcCcchHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccccccc
Q 026513           72 ELFLDYGTGSGILGIAAIKF-GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDLSS  150 (237)
Q Consensus        72 ~~vLDlG~G~G~~~~~la~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~  150 (237)
                      .+|||+|||+|.++..+++. +..+++++|+ +.+++.|++++...++.+   ++.++.+|+++                
T Consensus       169 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~---~v~~~~~d~~~----------------  228 (334)
T 2ip2_A          169 RSFVDVGGGSGELTKAILQAEPSARGVMLDR-EGSLGVARDNLSSLLAGE---RVSLVGGDMLQ----------------  228 (334)
T ss_dssp             CEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-TTCTHHHHHHTHHHHHTT---SEEEEESCTTT----------------
T ss_pred             CEEEEeCCCchHHHHHHHHHCCCCEEEEeCc-HHHHHHHHHHHhhcCCCC---cEEEecCCCCC----------------
Confidence            79999999999999998865 5678999999 999999999987666543   48888999863                


Q ss_pred             ccccCCCCCCceeEEEEeCChHHH-----HHHHHHHhHhcCCCeEEEEecc
Q 026513          151 HKIRGISQTEKYDVVIANILLNPL-----LQLADHIVSYAKPGAVVGISGI  196 (237)
Q Consensus       151 ~~~~~~~~~~~fD~I~~n~~~~~~-----~~~l~~~~~~L~~gG~liis~~  196 (237)
                           .. .++||+|++..++++.     ..+++++.+.|+|||++++.+.
T Consensus       229 -----~~-~~~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~  273 (334)
T 2ip2_A          229 -----EV-PSNGDIYLLSRIIGDLDEAASLRLLGNCREAMAGDGRVVVIER  273 (334)
T ss_dssp             -----CC-CSSCSEEEEESCGGGCCHHHHHHHHHHHHHHSCTTCEEEEEEC
T ss_pred             -----CC-CCCCCEEEEchhccCCCHHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence                 11 3579999998887632     3789999999999999999754

>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens}

Probab=99.37  E-value=3.8e-12  Score=102.48  Aligned_cols=122  Identities=12%  Similarity=0.130  Sum_probs=90.6

Q ss_pred             cCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccccc
Q 026513           69 KGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDL  148 (237)
Q Consensus        69 ~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~  148 (237)
                      .++.+|||+|||+|.++..++    .+++|+|+|+.            +       +.++.+|+.+.             
T Consensus        66 ~~~~~vLDiG~G~G~~~~~l~----~~v~~~D~s~~------------~-------~~~~~~d~~~~-------------  109 (215)
T 2zfu_A           66 PASLVVADFGCGDCRLASSIR----NPVHCFDLASL------------D-------PRVTVCDMAQV-------------  109 (215)
T ss_dssp             CTTSCEEEETCTTCHHHHHCC----SCEEEEESSCS------------S-------TTEEESCTTSC-------------
T ss_pred             CCCCeEEEECCcCCHHHHHhh----ccEEEEeCCCC------------C-------ceEEEeccccC-------------
Confidence            567899999999999988773    67999999997            1       34556776521             


Q ss_pred             ccccccCCCCCCceeEEEEeCChHH--HHHHHHHHhHhcCCCeEEEEeccCC--CCHHHHHHHHhhc-cccceeee-cCC
Q 026513          149 SSHKIRGISQTEKYDVVIANILLNP--LLQLADHIVSYAKPGAVVGISGILS--EQLPHIINRYSEF-LEDILVSE-MDD  222 (237)
Q Consensus       149 ~~~~~~~~~~~~~fD~I~~n~~~~~--~~~~l~~~~~~L~~gG~liis~~~~--~~~~~~~~~~~~~-~~~~~~~~-~~~  222 (237)
                             ..++++||+|+++.++++  ...++..+.++|+|||.++++.+..  ....++...+... |..+.... .+.
T Consensus       110 -------~~~~~~fD~v~~~~~l~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~  182 (215)
T 2zfu_A          110 -------PLEDESVDVAVFCLSLMGTNIRDFLEEANRVLKPGGLLKVAEVSSRFEDVRTFLRAVTKLGFKIVSKDLTNSH  182 (215)
T ss_dssp             -------SCCTTCEEEEEEESCCCSSCHHHHHHHHHHHEEEEEEEEEEECGGGCSCHHHHHHHHHHTTEEEEEEECCSTT
T ss_pred             -------CCCCCCEeEEEEehhccccCHHHHHHHHHHhCCCCeEEEEEEcCCCCCCHHHHHHHHHHCCCEEEEEecCCCe
Confidence                   123568999999888753  3578899999999999999986533  3567777777654 77666543 456


Q ss_pred             EEEEEEEEccc
Q 026513          223 WTCVSGKKKRV  233 (237)
Q Consensus       223 w~~~~~~~~~~  233 (237)
                      |..+.++|...
T Consensus       183 ~~~~~~~k~~~  193 (215)
T 2zfu_A          183 FFLFDFQKTGP  193 (215)
T ss_dssp             CEEEEEEECSS
T ss_pred             EEEEEEEecCc
Confidence            88888887643

>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45

Probab=99.37  E-value=1.6e-12  Score=116.61  Aligned_cols=118  Identities=20%  Similarity=0.258  Sum_probs=86.3

Q ss_pred             chhHHHHHHHHHhh--ccCCCeEEEEcCcchHHHHHHHHh--------------CCCeEEEEeCCHHHHHHHHHHHHHcC
Q 026513           54 HATTKLCLLLLRRL--IKGGELFLDYGTGSGILGIAAIKF--------------GAAMSVGADIDPQAIKSAHQNAALNN  117 (237)
Q Consensus        54 ~~~~~~~~~~l~~~--~~~~~~vLDlG~G~G~~~~~la~~--------------~~~~v~~vD~s~~~i~~a~~~~~~~~  117 (237)
                      +.+.+.+.+.+...  ..++.+|||+|||+|.+.+.+++.              ...+++|+|+++.+++.|+.++...+
T Consensus       153 fyTP~~v~~~mv~~l~~~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l~g  232 (445)
T 2okc_A          153 YFTPRPLIQAMVDCINPQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHG  232 (445)
T ss_dssp             GCCCHHHHHHHHHHHCCCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTT
T ss_pred             ccCcHHHHHHHHHHhCCCCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHHhC
Confidence            33444444444333  245779999999999999888753              23579999999999999999998888


Q ss_pred             CCCCcceEEeccCccccccccccccccccccccccccCCCCCCceeEEEEeCChHHH--------------------HHH
Q 026513          118 IGPKKMKLHLVPDRTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLNPL--------------------LQL  177 (237)
Q Consensus       118 ~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~~~~--------------------~~~  177 (237)
                      +...  .+.+.++|...                     .....+||+|++|||+...                    ..+
T Consensus       233 ~~~~--~~~i~~gD~l~---------------------~~~~~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~f  289 (445)
T 2okc_A          233 IGTD--RSPIVCEDSLE---------------------KEPSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNF  289 (445)
T ss_dssp             CCSS--CCSEEECCTTT---------------------SCCSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHH
T ss_pred             CCcC--CCCEeeCCCCC---------------------CcccCCcCEEEECCCCCCcccccchhhHhhcCCCCcchHHHH
Confidence            7421  15567888652                     1113489999999996431                    267


Q ss_pred             HHHHhHhcCCCeEEEEe
Q 026513          178 ADHIVSYAKPGAVVGIS  194 (237)
Q Consensus       178 l~~~~~~L~~gG~liis  194 (237)
                      +..+.++|+|||++.+.
T Consensus       290 l~~~~~~Lk~gG~~a~V  306 (445)
T 2okc_A          290 LQHMMLMLKTGGRAAVV  306 (445)
T ss_dssp             HHHHHHHEEEEEEEEEE
T ss_pred             HHHHHHHhccCCEEEEE
Confidence            89999999999999774

>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A*

Probab=99.37  E-value=1.6e-12  Score=110.02  Aligned_cols=111  Identities=14%  Similarity=0.125  Sum_probs=76.6

Q ss_pred             cCCCeEEEEcCcchHHHHHHH----H-hCCCe--EEEEeCCHHHHHHHHHHHHHc-CCCCCcceEEeccCcccccccccc
Q 026513           69 KGGELFLDYGTGSGILGIAAI----K-FGAAM--SVGADIDPQAIKSAHQNAALN-NIGPKKMKLHLVPDRTFTASMNER  140 (237)
Q Consensus        69 ~~~~~vLDlG~G~G~~~~~la----~-~~~~~--v~~vD~s~~~i~~a~~~~~~~-~~~~~~~~v~~~~~d~~~~~~~~~  140 (237)
                      .++.+|||+|||+|.++..++    . .+...  ++|+|+|+.|++.|++++... ++.+  +++.+..++..+...   
T Consensus        51 ~~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~~~~~--v~~~~~~~~~~~~~~---  125 (292)
T 2aot_A           51 KSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLEN--VKFAWHKETSSEYQS---  125 (292)
T ss_dssp             CSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCSSCTT--EEEEEECSCHHHHHH---
T ss_pred             CCCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhccCCCc--ceEEEEecchhhhhh---
Confidence            356799999999998765432    2 23443  499999999999999988653 3433  234445555431000   


Q ss_pred             ccccccccccccccCCCCCCceeEEEEeCChHHH---HHHHHHHhHhcCCCeEEEEec
Q 026513          141 VDGVVEDLSSHKIRGISQTEKYDVVIANILLNPL---LQLADHIVSYAKPGAVVGISG  195 (237)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~~~~---~~~l~~~~~~L~~gG~liis~  195 (237)
                                 ......++++||+|++..+++++   ...++++.++|||||.+++..
T Consensus       126 -----------~~~~~~~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~~  172 (292)
T 2aot_A          126 -----------RMLEKKELQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTNAKMLIIV  172 (292)
T ss_dssp             -----------HHHTTTCCCCEEEEEEESCGGGCSCHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             -----------hhccccCCCceeEEEEeeeeeecCCHHHHHHHHHHHcCCCcEEEEEE
Confidence                       00001135789999999998876   467999999999999999964

>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca}

Probab=99.36  E-value=7.5e-12  Score=105.28  Aligned_cols=114  Identities=17%  Similarity=0.177  Sum_probs=82.6

Q ss_pred             CCCeEEEEcCcc---hHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccc
Q 026513           70 GGELFLDYGTGS---GILGIAAIKF-GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVV  145 (237)
Q Consensus        70 ~~~~vLDlG~G~---G~~~~~la~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  145 (237)
                      +..+|||+|||+   |.++..+.+. +..+|+++|+|+.+++.|++++...  .    ++.++++|+.+....      +
T Consensus        77 ~~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~sp~~l~~Ar~~~~~~--~----~v~~~~~D~~~~~~~------~  144 (274)
T 2qe6_A           77 GISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDPMVLTHGRALLAKD--P----NTAVFTADVRDPEYI------L  144 (274)
T ss_dssp             CCCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHTTC--T----TEEEEECCTTCHHHH------H
T ss_pred             CCCEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECChHHHHHHHHhcCCC--C----CeEEEEeeCCCchhh------h
Confidence            347999999999   9887766654 5678999999999999999987432  2    388999998642100      0


Q ss_pred             cccccccccCCCCCCceeEEEEeCChHHH-----HHHHHHHhHhcCCCeEEEEeccCC
Q 026513          146 EDLSSHKIRGISQTEKYDVVIANILLNPL-----LQLADHIVSYAKPGAVVGISGILS  198 (237)
Q Consensus       146 ~~~~~~~~~~~~~~~~fD~I~~n~~~~~~-----~~~l~~~~~~L~~gG~liis~~~~  198 (237)
                      .   ........+..+||+|+++..++++     ..+++++.+.|+|||+|+++.+..
T Consensus       145 ~---~~~~~~~~d~~~~d~v~~~~vlh~~~d~~~~~~l~~~~~~L~pGG~l~i~~~~~  199 (274)
T 2qe6_A          145 N---HPDVRRMIDFSRPAAIMLVGMLHYLSPDVVDRVVGAYRDALAPGSYLFMTSLVD  199 (274)
T ss_dssp             H---SHHHHHHCCTTSCCEEEETTTGGGSCTTTHHHHHHHHHHHSCTTCEEEEEEEBC
T ss_pred             c---cchhhccCCCCCCEEEEEechhhhCCcHHHHHHHHHHHHhCCCCcEEEEEEecC
Confidence            0   0000000112489999999988764     578999999999999999987654

>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}

Probab=99.35  E-value=4.9e-12  Score=107.75  Aligned_cols=84  Identities=24%  Similarity=0.360  Sum_probs=65.8

Q ss_pred             ccCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccc
Q 026513           68 IKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVED  147 (237)
Q Consensus        68 ~~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  147 (237)
                      +.++.+|||+|||+|.++..+++. ..+|+|+|+|+.+++.+++++..++..+    +.++++|+.+             
T Consensus        40 ~~~~~~VLDiG~G~G~lt~~La~~-~~~v~~vDi~~~~~~~a~~~~~~~~~~~----v~~~~~D~~~-------------  101 (299)
T 2h1r_A           40 IKSSDIVLEIGCGTGNLTVKLLPL-AKKVITIDIDSRMISEVKKRCLYEGYNN----LEVYEGDAIK-------------  101 (299)
T ss_dssp             CCTTCEEEEECCTTSTTHHHHTTT-SSEEEEECSCHHHHHHHHHHHHHTTCCC----EEC----CCS-------------
T ss_pred             CCCcCEEEEEcCcCcHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHHcCCCc----eEEEECchhh-------------
Confidence            457889999999999999999987 4689999999999999999998777654    8889999763             


Q ss_pred             cccccccCCCCCCceeEEEEeCChHHHHHHH
Q 026513          148 LSSHKIRGISQTEKYDVVIANILLNPLLQLA  178 (237)
Q Consensus       148 ~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l  178 (237)
                              .. ..+||+|++|+|++....++
T Consensus       102 --------~~-~~~~D~Vv~n~py~~~~~~~  123 (299)
T 2h1r_A          102 --------TV-FPKFDVCTANIPYKISSPLI  123 (299)
T ss_dssp             --------SC-CCCCSEEEEECCGGGHHHHH
T ss_pred             --------CC-cccCCEEEEcCCcccccHHH
Confidence                    11 24899999999987665543

>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}

Probab=99.35  E-value=2.4e-13  Score=111.82  Aligned_cols=101  Identities=10%  Similarity=0.096  Sum_probs=68.8

Q ss_pred             cCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccccc
Q 026513           69 KGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDL  148 (237)
Q Consensus        69 ~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~  148 (237)
                      .++.+|||+|||+|.++..+++.|..+|+|+|+|+.|++.|+++........ ...+.+...+                 
T Consensus        36 ~~g~~VLDiGcGtG~~t~~la~~g~~~V~gvDis~~ml~~a~~~~~~~~~~~-~~~~~~~~~~-----------------   97 (232)
T 3opn_A           36 INGKTCLDIGSSTGGFTDVMLQNGAKLVYALDVGTNQLAWKIRSDERVVVME-QFNFRNAVLA-----------------   97 (232)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSCCCCCHHHHTCTTEEEEC-SCCGGGCCGG-----------------
T ss_pred             CCCCEEEEEccCCCHHHHHHHhcCCCEEEEEcCCHHHHHHHHHhCccccccc-cceEEEeCHh-----------------
Confidence            3577999999999999999998887799999999999998776532111000 0001111111                 


Q ss_pred             ccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEe
Q 026513          149 SSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGIS  194 (237)
Q Consensus       149 ~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis  194 (237)
                            .+ ....||.+.++.++..+..++..+.++|+|||.+++.
T Consensus        98 ------~~-~~~~~d~~~~D~v~~~l~~~l~~i~rvLkpgG~lv~~  136 (232)
T 3opn_A           98 ------DF-EQGRPSFTSIDVSFISLDLILPPLYEILEKNGEVAAL  136 (232)
T ss_dssp             ------GC-CSCCCSEEEECCSSSCGGGTHHHHHHHSCTTCEEEEE
T ss_pred             ------Hc-CcCCCCEEEEEEEhhhHHHHHHHHHHhccCCCEEEEE
Confidence                  01 0113455556555555578899999999999999985

>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*

Probab=99.33  E-value=1.2e-11  Score=105.04  Aligned_cols=116  Identities=15%  Similarity=0.190  Sum_probs=79.0

Q ss_pred             EeCcccccCCCCchhHHHHHHHHHhh-ccCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCC
Q 026513           42 ILNPGLAFGSGEHATTKLCLLLLRRL-IKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGP  120 (237)
Q Consensus        42 ~~~~~~~f~~g~~~~~~~~~~~l~~~-~~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~  120 (237)
                      .+.|...||.........+...+... +.++.+|||+|||+|.++..+++. ..+|+++|+|+.+++.+++++..  .. 
T Consensus        21 ~~~~~k~~GQnfL~d~~i~~~Iv~~l~~~~~~~VLEIG~G~G~lT~~La~~-~~~V~aVEid~~li~~a~~~~~~--~~-   96 (295)
T 3gru_A           21 MFKPKKKLGQCFLIDKNFVNKAVESANLTKDDVVLEIGLGKGILTEELAKN-AKKVYVIEIDKSLEPYANKLKEL--YN-   96 (295)
T ss_dssp             ---------CCEECCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHH-SSEEEEEESCGGGHHHHHHHHHH--CS-
T ss_pred             CCCCccccCccccCCHHHHHHHHHhcCCCCcCEEEEECCCchHHHHHHHhc-CCEEEEEECCHHHHHHHHHHhcc--CC-
Confidence            34555566654444444444444332 467889999999999999999988 57899999999999999999873  23 


Q ss_pred             CcceEEeccCccccccccccccccccccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHh
Q 026513          121 KKMKLHLVPDRTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSY  184 (237)
Q Consensus       121 ~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~  184 (237)
                         ++.++++|+.+..                    .+..+||+|++|+|++....++.++.+.
T Consensus        97 ---~v~vi~gD~l~~~--------------------~~~~~fD~Iv~NlPy~is~pil~~lL~~  137 (295)
T 3gru_A           97 ---NIEIIWGDALKVD--------------------LNKLDFNKVVANLPYQISSPITFKLIKR  137 (295)
T ss_dssp             ---SEEEEESCTTTSC--------------------GGGSCCSEEEEECCGGGHHHHHHHHHHH
T ss_pred             ---CeEEEECchhhCC--------------------cccCCccEEEEeCcccccHHHHHHHHhc
Confidence               3889999987422                    1234799999999988776665555543

>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0

Probab=99.32  E-value=1.5e-11  Score=102.41  Aligned_cols=93  Identities=13%  Similarity=0.154  Sum_probs=72.5

Q ss_pred             ccCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccc
Q 026513           68 IKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVED  147 (237)
Q Consensus        68 ~~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  147 (237)
                      +.++.+|||+|||+|.++..+++.+ .+|+|+|+|+.+++.+++++..  ..    ++.++++|+.+...+         
T Consensus        27 ~~~~~~VLEIG~G~G~lt~~La~~~-~~V~avEid~~~~~~~~~~~~~--~~----~v~~i~~D~~~~~~~---------   90 (255)
T 3tqs_A           27 PQKTDTLVEIGPGRGALTDYLLTEC-DNLALVEIDRDLVAFLQKKYNQ--QK----NITIYQNDALQFDFS---------   90 (255)
T ss_dssp             CCTTCEEEEECCTTTTTHHHHTTTS-SEEEEEECCHHHHHHHHHHHTT--CT----TEEEEESCTTTCCGG---------
T ss_pred             CCCcCEEEEEcccccHHHHHHHHhC-CEEEEEECCHHHHHHHHHHHhh--CC----CcEEEEcchHhCCHH---------
Confidence            4678899999999999999999885 7899999999999999998864  22    388999998753322         


Q ss_pred             cccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHh
Q 026513          148 LSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSY  184 (237)
Q Consensus       148 ~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~  184 (237)
                             .....++|| |++|+|+.....++.++...
T Consensus        91 -------~~~~~~~~~-vv~NlPY~is~~il~~ll~~  119 (255)
T 3tqs_A           91 -------SVKTDKPLR-VVGNLPYNISTPLLFHLFSQ  119 (255)
T ss_dssp             -------GSCCSSCEE-EEEECCHHHHHHHHHHHHHT
T ss_pred             -------HhccCCCeE-EEecCCcccCHHHHHHHHhC
Confidence                   222245788 99999998777776665543

>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38

Probab=99.32  E-value=4e-11  Score=102.55  Aligned_cols=106  Identities=10%  Similarity=0.033  Sum_probs=81.1

Q ss_pred             ccCCCeEEEEcCcchHHHHHHHHh--CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccc
Q 026513           68 IKGGELFLDYGTGSGILGIAAIKF--GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVV  145 (237)
Q Consensus        68 ~~~~~~vLDlG~G~G~~~~~la~~--~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  145 (237)
                      +.+|.+|||+|||+|..+..++..  +..+|+++|+++.+++.+++|+...++.+    +.++.+|+.+...        
T Consensus       100 ~~~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~g~~~----v~~~~~D~~~~~~--------  167 (309)
T 2b9e_A          100 PPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSC----CELAEEDFLAVSP--------  167 (309)
T ss_dssp             CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCS----EEEEECCGGGSCT--------
T ss_pred             CCCCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCe----EEEEeCChHhcCc--------
Confidence            467899999999999999998864  45789999999999999999999999875    8888998763110        


Q ss_pred             cccccccccCCCCCCceeEEEEeCChH---------------------------HHHHHHHHHhHhcCCCeEEEEec
Q 026513          146 EDLSSHKIRGISQTEKYDVVIANILLN---------------------------PLLQLADHIVSYAKPGAVVGISG  195 (237)
Q Consensus       146 ~~~~~~~~~~~~~~~~fD~I~~n~~~~---------------------------~~~~~l~~~~~~L~~gG~liis~  195 (237)
                               ......+||.|++|+|..                           ...+++..+.++++ ||+|++++
T Consensus       168 ---------~~~~~~~fD~Vl~D~PcSg~G~~~r~pd~~~~~~~~~~~~~~l~~~Q~~iL~~a~~~l~-gG~lvYsT  234 (309)
T 2b9e_A          168 ---------SDPRYHEVHYILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALTFPS-LQRLVYST  234 (309)
T ss_dssp             ---------TCGGGTTEEEEEECCCCCC------------------CCHHHHHHHHHHHHHHHTTCTT-CCEEEEEE
T ss_pred             ---------cccccCCCCEEEEcCCcCCCCCCccCCChhhhccCCHHHHHHHHHHHHHHHHHHHhccC-CCEEEEEC
Confidence                     000014799999998730                           01245777777776 89988873

>1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A*

Probab=99.31  E-value=1.3e-11  Score=103.92  Aligned_cols=106  Identities=11%  Similarity=0.145  Sum_probs=74.5

Q ss_pred             CCCeEEEEcCcchH----HHHHHHHh-C----CCeEEEEeCCHHHHHHHHHHHHH----cCCC---------------CC
Q 026513           70 GGELFLDYGTGSGI----LGIAAIKF-G----AAMSVGADIDPQAIKSAHQNAAL----NNIG---------------PK  121 (237)
Q Consensus        70 ~~~~vLDlG~G~G~----~~~~la~~-~----~~~v~~vD~s~~~i~~a~~~~~~----~~~~---------------~~  121 (237)
                      ++.+|||+|||+|.    +++.++.. +    ..+|+|+|+|+.+++.|++++..    .+++               ..
T Consensus       105 ~~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~  184 (274)
T 1af7_A          105 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEG  184 (274)
T ss_dssp             SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCS
T ss_pred             CCcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCC
Confidence            45799999999997    55556654 4    24899999999999999987521    0100               00


Q ss_pred             c--------ceEEeccCccccccccccccccccccccccccCCCCCCceeEEEEeCChHH-----HHHHHHHHhHhcCCC
Q 026513          122 K--------MKLHLVPDRTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLNP-----LLQLADHIVSYAKPG  188 (237)
Q Consensus       122 ~--------~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~~~-----~~~~l~~~~~~L~~g  188 (237)
                      .        -.+.|.++|+.+.                   .+...++||+|+|..++.+     ..+++..+.+.|+||
T Consensus       185 ~~~v~~~lr~~V~F~~~dl~~~-------------------~~~~~~~fDlI~crnvliyf~~~~~~~vl~~~~~~L~pg  245 (274)
T 1af7_A          185 LVRVRQELANYVEFSSVNLLEK-------------------QYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPD  245 (274)
T ss_dssp             EEEECHHHHTTEEEEECCTTCS-------------------SCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEE
T ss_pred             ceeechhhcccCeEEecccCCC-------------------CCCcCCCeeEEEECCchHhCCHHHHHHHHHHHHHHhCCC
Confidence            0        0366777776531                   1112468999999766533     367899999999999


Q ss_pred             eEEEEe
Q 026513          189 AVVGIS  194 (237)
Q Consensus       189 G~liis  194 (237)
                      |+|++.
T Consensus       246 G~L~lg  251 (274)
T 1af7_A          246 GLLFAG  251 (274)
T ss_dssp             EEEEEC
T ss_pred             cEEEEE
Confidence            999995

>2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A*

Probab=99.31  E-value=9.8e-13  Score=110.85  Aligned_cols=117  Identities=10%  Similarity=-0.006  Sum_probs=78.5

Q ss_pred             ccCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCC--CcceEEec--cCccccccccccccc
Q 026513           68 IKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGP--KKMKLHLV--PDRTFTASMNERVDG  143 (237)
Q Consensus        68 ~~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~--~~~~v~~~--~~d~~~~~~~~~~~~  143 (237)
                      ++++.+|||+|||+|.++..+++.  .+|+|+|+++ ++..+++.    ....  ....+.++  ++|+.+         
T Consensus        80 ~~~g~~VLDlGcGtG~~s~~la~~--~~V~gVD~s~-m~~~a~~~----~~~~~~~~~~v~~~~~~~D~~~---------  143 (276)
T 2wa2_A           80 VELKGTVVDLGCGRGSWSYYAASQ--PNVREVKAYT-LGTSGHEK----PRLVETFGWNLITFKSKVDVTK---------  143 (276)
T ss_dssp             CCCCEEEEEESCTTCHHHHHHHTS--TTEEEEEEEC-CCCTTSCC----CCCCCCTTGGGEEEECSCCGGG---------
T ss_pred             CCCCCEEEEeccCCCHHHHHHHHc--CCEEEEECch-hhhhhhhc----hhhhhhcCCCeEEEeccCcHhh---------
Confidence            567899999999999999999987  6799999999 53333221    1110  00125677  788752         


Q ss_pred             cccccccccccCCCCCCceeEEEEeCC-------hHHHH--HHHHHHhHhcCCCe--EEEEeccCCCCHH---HHHHHHh
Q 026513          144 VVEDLSSHKIRGISQTEKYDVVIANIL-------LNPLL--QLADHIVSYAKPGA--VVGISGILSEQLP---HIINRYS  209 (237)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~fD~I~~n~~-------~~~~~--~~l~~~~~~L~~gG--~liis~~~~~~~~---~~~~~~~  209 (237)
                                  +. +++||+|+|+..       .+...  .++..+.++|+|||  .+++..+. +...   +++..+.
T Consensus       144 ------------l~-~~~fD~Vvsd~~~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~~v~~~~~-~~~~~~~~~l~~l~  209 (276)
T 2wa2_A          144 ------------ME-PFQADTVLCDIGESNPTAAVEASRTLTVLNVISRWLEYNQGCGFCVKVLN-PYSCDVLEALMKMQ  209 (276)
T ss_dssp             ------------CC-CCCCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHHHSTTCEEEEEESC-CCSHHHHHHHHHHH
T ss_pred             ------------CC-CCCcCEEEECCCcCCCchhhhHHHHHHHHHHHHHHhccCCCcEEEEEeCC-CCchhHHHHHHHHH
Confidence                        22 568999999865       11121  36788999999999  99987655 4334   4555555


Q ss_pred             hcccc
Q 026513          210 EFLED  214 (237)
Q Consensus       210 ~~~~~  214 (237)
                      ..|..
T Consensus       210 ~~f~~  214 (276)
T 2wa2_A          210 ARFGG  214 (276)
T ss_dssp             HHHCC
T ss_pred             HHcCC
Confidence            44433

>2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus}

Probab=99.30  E-value=2.3e-12  Score=107.97  Aligned_cols=117  Identities=9%  Similarity=0.016  Sum_probs=78.7

Q ss_pred             hccCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCC--CcceEEec--cCcccccccccccc
Q 026513           67 LIKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGP--KKMKLHLV--PDRTFTASMNERVD  142 (237)
Q Consensus        67 ~~~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~--~~~~v~~~--~~d~~~~~~~~~~~  142 (237)
                      .+.++.+|||+|||+|.++..+++.  .+|+|+|+++ ++..+++.    ....  ....+.++  ++|+.+        
T Consensus        71 ~~~~g~~VLDlGcGtG~~s~~la~~--~~V~gvD~s~-m~~~a~~~----~~~~~~~~~~v~~~~~~~D~~~--------  135 (265)
T 2oxt_A           71 YVELTGRVVDLGCGRGGWSYYAASR--PHVMDVRAYT-LGVGGHEV----PRITESYGWNIVKFKSRVDIHT--------  135 (265)
T ss_dssp             SCCCCEEEEEESCTTSHHHHHHHTS--TTEEEEEEEC-CCCSSCCC----CCCCCBTTGGGEEEECSCCTTT--------
T ss_pred             CCCCCCEEEEeCcCCCHHHHHHHHc--CcEEEEECch-hhhhhhhh----hhhhhccCCCeEEEecccCHhH--------
Confidence            4568899999999999999999887  6799999999 43222211    1110  00025666  778752        


Q ss_pred             ccccccccccccCCCCCCceeEEEEeCC-------hHHHH--HHHHHHhHhcCCCe--EEEEeccCCCCHH---HHHHHH
Q 026513          143 GVVEDLSSHKIRGISQTEKYDVVIANIL-------LNPLL--QLADHIVSYAKPGA--VVGISGILSEQLP---HIINRY  208 (237)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~fD~I~~n~~-------~~~~~--~~l~~~~~~L~~gG--~liis~~~~~~~~---~~~~~~  208 (237)
                                   +. +.+||+|+|+..       .+...  .++..+.++|+|||  .+++..+. +...   +++..+
T Consensus       136 -------------l~-~~~fD~V~sd~~~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~fv~kv~~-~~~~~~~~~l~~l  200 (265)
T 2oxt_A          136 -------------LP-VERTDVIMCDVGESSPKWSVESERTIKILELLEKWKVKNPSADFVVKVLC-PYSVEVMERLSVM  200 (265)
T ss_dssp             -------------SC-CCCCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEESC-TTSHHHHHHHHHH
T ss_pred             -------------CC-CCCCcEEEEeCcccCCccchhHHHHHHHHHHHHHHhccCCCeEEEEEeCC-CCChhHHHHHHHH
Confidence                         22 568999999865       11121  36788899999999  99997665 4444   555555


Q ss_pred             hhccc
Q 026513          209 SEFLE  213 (237)
Q Consensus       209 ~~~~~  213 (237)
                      ...|.
T Consensus       201 ~~~f~  205 (265)
T 2oxt_A          201 QRKWG  205 (265)
T ss_dssp             HHHHC
T ss_pred             HHHcC
Confidence            54443

>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*

Probab=99.28  E-value=5.9e-12  Score=111.51  Aligned_cols=122  Identities=19%  Similarity=0.176  Sum_probs=85.6

Q ss_pred             hhHHHHHHHHHhhc--cCCCeEEEEcCcchHHHHHHHHh--CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccC
Q 026513           55 ATTKLCLLLLRRLI--KGGELFLDYGTGSGILGIAAIKF--GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPD  130 (237)
Q Consensus        55 ~~~~~~~~~l~~~~--~~~~~vLDlG~G~G~~~~~la~~--~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~  130 (237)
                      .+...+.+.+...+  .++.+|||+|||+|.++..+++.  +..+++|+|+++.+++.|         .    ++.++++
T Consensus        22 ~TP~~l~~~~~~~~~~~~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a---------~----~~~~~~~   88 (421)
T 2ih2_A           22 ETPPEVVDFMVSLAEAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP---------P----WAEGILA   88 (421)
T ss_dssp             CCCHHHHHHHHHHCCCCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC---------T----TEEEEES
T ss_pred             eCCHHHHHHHHHhhccCCCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC---------C----CCcEEeC
Confidence            33344444444332  34679999999999999999865  567899999999998877         1    2778889


Q ss_pred             ccccccccccccccccccccccccCCCCCCceeEEEEeCChH--------------HH------------------HHHH
Q 026513          131 RTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLN--------------PL------------------LQLA  178 (237)
Q Consensus       131 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~~--------------~~------------------~~~l  178 (237)
                      |..+                     ....++||+|++|||+.              ..                  ..++
T Consensus        89 D~~~---------------------~~~~~~fD~Ii~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl  147 (421)
T 2ih2_A           89 DFLL---------------------WEPGEAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFL  147 (421)
T ss_dssp             CGGG---------------------CCCSSCEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHH
T ss_pred             Chhh---------------------cCccCCCCEEEECcCccCcccccccccccCHHHHHHHHHhhhcccCCccHHHHHH
Confidence            8763                     22246899999999851              11                  1568


Q ss_pred             HHHhHhcCCCeEEEEec---cC-CCCHHHHHHHHhh
Q 026513          179 DHIVSYAKPGAVVGISG---IL-SEQLPHIINRYSE  210 (237)
Q Consensus       179 ~~~~~~L~~gG~liis~---~~-~~~~~~~~~~~~~  210 (237)
                      ..+.++|+|||.+++..   ++ ......+.+.+..
T Consensus       148 ~~~~~~Lk~~G~~~~i~p~~~l~~~~~~~lr~~l~~  183 (421)
T 2ih2_A          148 EKAVRLLKPGGVLVFVVPATWLVLEDFALLREFLAR  183 (421)
T ss_dssp             HHHHHHEEEEEEEEEEEEGGGGTCGGGHHHHHHHHH
T ss_pred             HHHHHHhCCCCEEEEEEChHHhcCccHHHHHHHHHh
Confidence            88999999999998852   22 3344555555544

>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*

Probab=99.28  E-value=1.1e-11  Score=109.97  Aligned_cols=98  Identities=12%  Similarity=0.132  Sum_probs=74.2

Q ss_pred             cCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEE-eccCccccccccccccccccc
Q 026513           69 KGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLH-LVPDRTFTASMNERVDGVVED  147 (237)
Q Consensus        69 ~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~-~~~~d~~~~~~~~~~~~~~~~  147 (237)
                      .++.+|||+|||+|.++..++..+. +|+|+|+|+.+++.|+++    ++..   ... +...+...             
T Consensus       106 ~~~~~VLDiGcG~G~~~~~l~~~g~-~v~gvD~s~~~~~~a~~~----~~~~---~~~~~~~~~~~~-------------  164 (416)
T 4e2x_A          106 GPDPFIVEIGCNDGIMLRTIQEAGV-RHLGFEPSSGVAAKAREK----GIRV---RTDFFEKATADD-------------  164 (416)
T ss_dssp             SSSCEEEEETCTTTTTHHHHHHTTC-EEEEECCCHHHHHHHHTT----TCCE---ECSCCSHHHHHH-------------
T ss_pred             CCCCEEEEecCCCCHHHHHHHHcCC-cEEEECCCHHHHHHHHHc----CCCc---ceeeechhhHhh-------------
Confidence            4688999999999999999998755 799999999999998876    3321   111 11122110             


Q ss_pred             cccccccCCCCCCceeEEEEeCChHHH---HHHHHHHhHhcCCCeEEEEe
Q 026513          148 LSSHKIRGISQTEKYDVVIANILLNPL---LQLADHIVSYAKPGAVVGIS  194 (237)
Q Consensus       148 ~~~~~~~~~~~~~~fD~I~~n~~~~~~---~~~l~~~~~~L~~gG~liis  194 (237)
                             ...++++||+|+++.+++++   ..+++.+.++|+|||++++.
T Consensus       165 -------l~~~~~~fD~I~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~  207 (416)
T 4e2x_A          165 -------VRRTEGPANVIYAANTLCHIPYVQSVLEGVDALLAPDGVFVFE  207 (416)
T ss_dssp             -------HHHHHCCEEEEEEESCGGGCTTHHHHHHHHHHHEEEEEEEEEE
T ss_pred             -------cccCCCCEEEEEECChHHhcCCHHHHHHHHHHHcCCCeEEEEE
Confidence                   00124789999999998776   47799999999999999996

>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A

Probab=99.27  E-value=6.1e-11  Score=98.01  Aligned_cols=95  Identities=13%  Similarity=0.247  Sum_probs=70.5

Q ss_pred             ccCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccc
Q 026513           68 IKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVED  147 (237)
Q Consensus        68 ~~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  147 (237)
                      +.++.+|||+|||+|.++..++..+ .+|+|+|+|+.+++.+++++...  .    ++.++++|+.+..           
T Consensus        28 ~~~~~~VLDiG~G~G~lt~~l~~~~-~~v~~vD~~~~~~~~a~~~~~~~--~----~v~~~~~D~~~~~-----------   89 (244)
T 1qam_A           28 LNEHDNIFEIGSGKGHFTLELVQRC-NFVTAIEIDHKLCKTTENKLVDH--D----NFQVLNKDILQFK-----------   89 (244)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHS-SEEEEECSCHHHHHHHHHHTTTC--C----SEEEECCCGGGCC-----------
T ss_pred             CCCCCEEEEEeCCchHHHHHHHHcC-CeEEEEECCHHHHHHHHHhhccC--C----CeEEEEChHHhCC-----------
Confidence            3568899999999999999999886 78999999999999999887532  2    3889999986321           


Q ss_pred             cccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCe
Q 026513          148 LSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGA  189 (237)
Q Consensus       148 ~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG  189 (237)
                              +.....| .|++|+|++....++..+......++
T Consensus        90 --------~~~~~~~-~vv~nlPy~~~~~~l~~~l~~~~~~~  122 (244)
T 1qam_A           90 --------FPKNQSY-KIFGNIPYNISTDIIRKIVFDSIADE  122 (244)
T ss_dssp             --------CCSSCCC-EEEEECCGGGHHHHHHHHHHSCCCSE
T ss_pred             --------cccCCCe-EEEEeCCcccCHHHHHHHHhcCCCCe
Confidence                    1112345 68999998766666555554433333

>2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A*

Probab=99.26  E-value=2.3e-11  Score=103.01  Aligned_cols=111  Identities=12%  Similarity=0.177  Sum_probs=81.0

Q ss_pred             ccCCCeEEEEcC------cchHHHHHHHHhC-CCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEe-ccCccccccccc
Q 026513           68 IKGGELFLDYGT------GSGILGIAAIKFG-AAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHL-VPDRTFTASMNE  139 (237)
Q Consensus        68 ~~~~~~vLDlG~------G~G~~~~~la~~~-~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~-~~~d~~~~~~~~  139 (237)
                      ++++.+|||+||      |+|. ...+...+ ..+|+|+|+++.             +.    ++.+ +++|+.+     
T Consensus        61 l~~g~~VLDLGcGsg~~~GpGs-~~~a~~~~~~~~V~gvDis~~-------------v~----~v~~~i~gD~~~-----  117 (290)
T 2xyq_A           61 VPYNMRVIHFGAGSDKGVAPGT-AVLRQWLPTGTLLVDSDLNDF-------------VS----DADSTLIGDCAT-----  117 (290)
T ss_dssp             CCTTCEEEEESCCCTTSBCHHH-HHHHHHSCTTCEEEEEESSCC-------------BC----SSSEEEESCGGG-----
T ss_pred             CCCCCEEEEeCCCCCCCCCcHH-HHHHHHcCCCCEEEEEECCCC-------------CC----CCEEEEECcccc-----
Confidence            577899999999      5577 33322345 478999999997             12    2567 8899863     


Q ss_pred             cccccccccccccccCCCCCCceeEEEEeCCh--------------HHHHHHHHHHhHhcCCCeEEEEeccCCCCHHHHH
Q 026513          140 RVDGVVEDLSSHKIRGISQTEKYDVVIANILL--------------NPLLQLADHIVSYAKPGAVVGISGILSEQLPHII  205 (237)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~--------------~~~~~~l~~~~~~L~~gG~liis~~~~~~~~~~~  205 (237)
                                      +...++||+|++|+..              ..+..+++.+.++|+|||.+++..+......++.
T Consensus       118 ----------------~~~~~~fD~Vvsn~~~~~~g~~~~d~~~~~~l~~~~l~~a~r~LkpGG~~v~~~~~~~~~~~l~  181 (290)
T 2xyq_A          118 ----------------VHTANKWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEHSWNADLY  181 (290)
T ss_dssp             ----------------CCCSSCEEEEEECCCCCC---CCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSSSCCHHHH
T ss_pred             ----------------CCccCcccEEEEcCCccccccccccccchHHHHHHHHHHHHHhcCCCcEEEEEEeccCCHHHHH
Confidence                            1123689999998642              2345788999999999999999877666667888


Q ss_pred             HHHhhc-ccccee
Q 026513          206 NRYSEF-LEDILV  217 (237)
Q Consensus       206 ~~~~~~-~~~~~~  217 (237)
                      ..+... |..++.
T Consensus       182 ~~l~~~GF~~v~~  194 (290)
T 2xyq_A          182 KLMGHFSWWTAFV  194 (290)
T ss_dssp             HHHTTEEEEEEEE
T ss_pred             HHHHHcCCcEEEE
Confidence            888876 655544

>2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A*

Probab=99.25  E-value=8.3e-12  Score=106.62  Aligned_cols=117  Identities=11%  Similarity=0.088  Sum_probs=77.7

Q ss_pred             hccCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeC----CHHHHHHHHHHHHHcCCCCCcceEEeccC-ccccccccccc
Q 026513           67 LIKGGELFLDYGTGSGILGIAAIKFGAAMSVGADI----DPQAIKSAHQNAALNNIGPKKMKLHLVPD-RTFTASMNERV  141 (237)
Q Consensus        67 ~~~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~----s~~~i~~a~~~~~~~~~~~~~~~v~~~~~-d~~~~~~~~~~  141 (237)
                      .+++|.+|||+|||+|.++..+++.  .+|+|+|+    ++.+++.+.    .....  .-.+.++++ |..+       
T Consensus        79 ~~~~g~~VLDlGcG~G~~s~~la~~--~~V~gvD~~~~~~~~~~~~~~----~~~~~--~~~v~~~~~~D~~~-------  143 (305)
T 2p41_A           79 LVTPEGKVVDLGCGRGGWSYYCGGL--KNVREVKGLTKGGPGHEEPIP----MSTYG--WNLVRLQSGVDVFF-------  143 (305)
T ss_dssp             SSCCCEEEEEETCTTSHHHHHHHTS--TTEEEEEEECCCSTTSCCCCC----CCSTT--GGGEEEECSCCTTT-------
T ss_pred             CCCCCCEEEEEcCCCCHHHHHHHhc--CCEEEEeccccCchhHHHHHH----hhhcC--CCCeEEEecccccc-------
Confidence            3567899999999999999999987  57999999    554432111    11110  013777777 7652       


Q ss_pred             cccccccccccccCCCCCCceeEEEEeCChH-------HHH--HHHHHHhHhcCCCeEEEEeccCCCC--HHHHHHHHhh
Q 026513          142 DGVVEDLSSHKIRGISQTEKYDVVIANILLN-------PLL--QLADHIVSYAKPGAVVGISGILSEQ--LPHIINRYSE  210 (237)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~~-------~~~--~~l~~~~~~L~~gG~liis~~~~~~--~~~~~~~~~~  210 (237)
                                    + +..+||+|+|+.+.+       ...  .++..+.++|+|||.+++..+....  ..++...+..
T Consensus       144 --------------l-~~~~fD~V~sd~~~~~g~~~~d~~~~l~~L~~~~~~LkpGG~~v~kv~~~~~~~~~~~l~~l~~  208 (305)
T 2p41_A          144 --------------I-PPERCDTLLCDIGESSPNPTVEAGRTLRVLNLVENWLSNNTQFCVKVLNPYMSSVIEKMEALQR  208 (305)
T ss_dssp             --------------S-CCCCCSEEEECCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEESCCCSHHHHHHHHHHHH
T ss_pred             --------------C-CcCCCCEEEECCccccCcchhhHHHHHHHHHHHHHHhCCCCEEEEEeCCCCCchHHHHHHHHHH
Confidence                          2 246899999987631       111  4678888999999999986554432  3356666555


Q ss_pred             ccc
Q 026513          211 FLE  213 (237)
Q Consensus       211 ~~~  213 (237)
                      .|.
T Consensus       209 ~f~  211 (305)
T 2p41_A          209 KHG  211 (305)
T ss_dssp             HHC
T ss_pred             HcC
Confidence            443

>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*

Probab=99.22  E-value=1.9e-10  Score=99.98  Aligned_cols=136  Identities=18%  Similarity=0.231  Sum_probs=97.5

Q ss_pred             cCCCeEEEEcCcchHHHHHHHH-hCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccc
Q 026513           69 KGGELFLDYGTGSGILGIAAIK-FGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVED  147 (237)
Q Consensus        69 ~~~~~vLDlG~G~G~~~~~la~-~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  147 (237)
                      .+..+|+|+|||+|.++..+++ ++..+++..|. |.+++.|++++...+..    +++++.+|+++.            
T Consensus       178 ~~~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dl-p~v~~~a~~~~~~~~~~----rv~~~~gD~~~~------------  240 (353)
T 4a6d_A          178 SVFPLMCDLGGGAGALAKECMSLYPGCKITVFDI-PEVVWTAKQHFSFQEEE----QIDFQEGDFFKD------------  240 (353)
T ss_dssp             GGCSEEEEETCTTSHHHHHHHHHCSSCEEEEEEC-HHHHHHHHHHSCC--CC----SEEEEESCTTTS------------
T ss_pred             ccCCeEEeeCCCCCHHHHHHHHhCCCceeEeccC-HHHHHHHHHhhhhcccC----ceeeecCccccC------------
Confidence            4567999999999999999886 47778888887 78999999887654433    499999998741            


Q ss_pred             cccccccCCCCCCceeEEEEeCChHHH-----HHHHHHHhHhcCCCeEEEEeccCCC-----------------------
Q 026513          148 LSSHKIRGISQTEKYDVVIANILLNPL-----LQLADHIVSYAKPGAVVGISGILSE-----------------------  199 (237)
Q Consensus       148 ~~~~~~~~~~~~~~fD~I~~n~~~~~~-----~~~l~~~~~~L~~gG~liis~~~~~-----------------------  199 (237)
                                +...+|++++...+|..     .++++++.+.|+|||.++|.+....                       
T Consensus       241 ----------~~~~~D~~~~~~vlh~~~d~~~~~iL~~~~~al~pgg~lli~e~~~~~~~~~~~~~~~~dl~ml~~~~g~  310 (353)
T 4a6d_A          241 ----------PLPEADLYILARVLHDWADGKCSHLLERIYHTCKPGGGILVIESLLDEDRRGPLLTQLYSLNMLVQTEGQ  310 (353)
T ss_dssp             ----------CCCCCSEEEEESSGGGSCHHHHHHHHHHHHHHCCTTCEEEEEECCCCTTSCCCHHHHHHHHHHHHSSSCC
T ss_pred             ----------CCCCceEEEeeeecccCCHHHHHHHHHHHHhhCCCCCEEEEEEeeeCCCCCCCHHHHHHHHHHHHhCCCc
Confidence                      13468999998877643     4679999999999999998654211                       


Q ss_pred             --CHHHHHHHHhh-ccccceeeecC-CEEEEEEEEc
Q 026513          200 --QLPHIINRYSE-FLEDILVSEMD-DWTCVSGKKK  231 (237)
Q Consensus       200 --~~~~~~~~~~~-~~~~~~~~~~~-~w~~~~~~~~  231 (237)
                        ...++...+.+ +|+.+++...+ .+..+.++|+
T Consensus       311 ert~~e~~~ll~~AGf~~v~v~~~~~~~~~i~ArKg  346 (353)
T 4a6d_A          311 ERTPTHYHMLLSSAGFRDFQFKKTGAIYDAILARKG  346 (353)
T ss_dssp             CCCHHHHHHHHHHHTCEEEEEECCSSSCEEEEEECC
T ss_pred             CCCHHHHHHHHHHCCCceEEEEEcCCceEEEEEEec
Confidence              12233333333 37777765544 4667777765

>3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A*

Probab=99.22  E-value=2e-11  Score=107.07  Aligned_cols=115  Identities=17%  Similarity=0.142  Sum_probs=79.9

Q ss_pred             hhHHHHHHHHHhhccCCCeEEEEcCc------chHHHHHHHH-h-CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEE
Q 026513           55 ATTKLCLLLLRRLIKGGELFLDYGTG------SGILGIAAIK-F-GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLH  126 (237)
Q Consensus        55 ~~~~~~~~~l~~~~~~~~~vLDlG~G------~G~~~~~la~-~-~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~  126 (237)
                      .........+.....++.+|||||||      +|..++.+++ . +..+|+|+|+|+.+.        . ...    ++.
T Consensus       201 ~y~~~Ye~lL~~l~~~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~--------~-~~~----rI~  267 (419)
T 3sso_A          201 WFTPHYDRHFRDYRNQQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSH--------V-DEL----RIR  267 (419)
T ss_dssp             BCHHHHHHHHGGGTTSCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGG--------G-CBT----TEE
T ss_pred             hHHHHHHHHHHhhcCCCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHh--------h-cCC----CcE
Confidence            34555666665555567899999999      6666666654 3 678899999999872        1 112    388


Q ss_pred             eccCccccccccccccccccccccccccCC-CCCCceeEEEEeCCh--HHHHHHHHHHhHhcCCCeEEEEeccC
Q 026513          127 LVPDRTFTASMNERVDGVVEDLSSHKIRGI-SQTEKYDVVIANILL--NPLLQLADHIVSYAKPGAVVGISGIL  197 (237)
Q Consensus       127 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~fD~I~~n~~~--~~~~~~l~~~~~~L~~gG~liis~~~  197 (237)
                      ++++|..+....+               .+ ...++||+|+++...  ......++++.++|||||++++.++.
T Consensus       268 fv~GDa~dlpf~~---------------~l~~~d~sFDlVisdgsH~~~d~~~aL~el~rvLKPGGvlVi~Dl~  326 (419)
T 3sso_A          268 TIQGDQNDAEFLD---------------RIARRYGPFDIVIDDGSHINAHVRTSFAALFPHVRPGGLYVIEDMW  326 (419)
T ss_dssp             EEECCTTCHHHHH---------------HHHHHHCCEEEEEECSCCCHHHHHHHHHHHGGGEEEEEEEEEECGG
T ss_pred             EEEecccccchhh---------------hhhcccCCccEEEECCcccchhHHHHHHHHHHhcCCCeEEEEEecc
Confidence            9999986422110               00 013689999998753  33456799999999999999997543

>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*

Probab=99.21  E-value=4.2e-11  Score=100.54  Aligned_cols=112  Identities=14%  Similarity=0.130  Sum_probs=78.3

Q ss_pred             cccccCCCCchhHHHHHHHHHhh-ccCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcc
Q 026513           45 PGLAFGSGEHATTKLCLLLLRRL-IKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKM  123 (237)
Q Consensus        45 ~~~~f~~g~~~~~~~~~~~l~~~-~~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~  123 (237)
                      +...||.........+...+... +.++ +|||+|||+|.++..+++.+ .+|+|+|+|+.+++.+++++..   .    
T Consensus        21 ~~k~~GQnfL~d~~i~~~Iv~~~~~~~~-~VLEIG~G~G~lt~~L~~~~-~~V~avEid~~~~~~l~~~~~~---~----   91 (271)
T 3fut_A           21 ADKRFGQNFLVSEAHLRRIVEAARPFTG-PVFEVGPGLGALTRALLEAG-AEVTAIEKDLRLRPVLEETLSG---L----   91 (271)
T ss_dssp             CSTTSSCCEECCHHHHHHHHHHHCCCCS-CEEEECCTTSHHHHHHHHTT-CCEEEEESCGGGHHHHHHHTTT---S----
T ss_pred             ccccCCccccCCHHHHHHHHHhcCCCCC-eEEEEeCchHHHHHHHHHcC-CEEEEEECCHHHHHHHHHhcCC---C----
Confidence            33445544333334444444332 4667 99999999999999999886 6799999999999999988752   2    


Q ss_pred             eEEeccCccccccccccccccccccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHh
Q 026513          124 KLHLVPDRTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSY  184 (237)
Q Consensus       124 ~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~  184 (237)
                      ++.++++|+.+...+                   ....+|.|++|+|++....++.++...
T Consensus        92 ~v~vi~~D~l~~~~~-------------------~~~~~~~iv~NlPy~iss~il~~ll~~  133 (271)
T 3fut_A           92 PVRLVFQDALLYPWE-------------------EVPQGSLLVANLPYHIATPLVTRLLKT  133 (271)
T ss_dssp             SEEEEESCGGGSCGG-------------------GSCTTEEEEEEECSSCCHHHHHHHHHH
T ss_pred             CEEEEECChhhCChh-------------------hccCccEEEecCcccccHHHHHHHhcC
Confidence            388999998743211                   113689999999986655555554443

>3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A*

Probab=99.21  E-value=6e-11  Score=99.40  Aligned_cols=114  Identities=17%  Similarity=0.146  Sum_probs=76.8

Q ss_pred             CeEEEEcCcc--hHHHHHHH-H-hCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccc
Q 026513           72 ELFLDYGTGS--GILGIAAI-K-FGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVED  147 (237)
Q Consensus        72 ~~vLDlG~G~--G~~~~~la-~-~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  147 (237)
                      .++||||||.  +..+..++ + .+..+|+++|.|+.|++.|++.+...+..    ++.++++|+.+...         .
T Consensus        80 ~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~~~~----~~~~v~aD~~~~~~---------~  146 (277)
T 3giw_A           80 RQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLASTPEG----RTAYVEADMLDPAS---------I  146 (277)
T ss_dssp             CEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCCSSS----EEEEEECCTTCHHH---------H
T ss_pred             CEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccCCCC----cEEEEEecccChhh---------h
Confidence            6899999997  32333333 3 36788999999999999999887644322    48899999874210         0


Q ss_pred             cccccc-cCCCCCCceeEEEEeCChHHHH------HHHHHHhHhcCCCeEEEEeccCCC
Q 026513          148 LSSHKI-RGISQTEKYDVVIANILLNPLL------QLADHIVSYAKPGAVVGISGILSE  199 (237)
Q Consensus       148 ~~~~~~-~~~~~~~~fD~I~~n~~~~~~~------~~l~~~~~~L~~gG~liis~~~~~  199 (237)
                      +..... ..+-.++++ .|++|..+|++.      .++..+.+.|+|||+|+++.+...
T Consensus       147 l~~~~~~~~~D~~~p~-av~~~avLH~l~d~~~p~~~l~~l~~~L~PGG~Lvls~~~~d  204 (277)
T 3giw_A          147 LDAPELRDTLDLTRPV-ALTVIAIVHFVLDEDDAVGIVRRLLEPLPSGSYLAMSIGTAE  204 (277)
T ss_dssp             HTCHHHHTTCCTTSCC-EEEEESCGGGSCGGGCHHHHHHHHHTTSCTTCEEEEEEECCT
T ss_pred             hcccccccccCcCCcc-hHHhhhhHhcCCchhhHHHHHHHHHHhCCCCcEEEEEeccCC
Confidence            000000 011112233 578899887763      578999999999999999876544

>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}

Probab=99.21  E-value=7.8e-11  Score=102.12  Aligned_cols=99  Identities=11%  Similarity=0.109  Sum_probs=74.5

Q ss_pred             cCCCeEEEEcCcchHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccc
Q 026513           69 KGGELFLDYGTGSGILGIAAIKF-GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVED  147 (237)
Q Consensus        69 ~~~~~vLDlG~G~G~~~~~la~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  147 (237)
                      .++.+|||+|||+|.++..+++. +..+++++|++ .++.  ++++...+..+   ++.++.+|+++             
T Consensus       183 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~--~~~~~~~~~~~---~v~~~~~d~~~-------------  243 (348)
T 3lst_A          183 PATGTVADVGGGRGGFLLTVLREHPGLQGVLLDRA-EVVA--RHRLDAPDVAG---RWKVVEGDFLR-------------  243 (348)
T ss_dssp             CSSEEEEEETCTTSHHHHHHHHHCTTEEEEEEECH-HHHT--TCCCCCGGGTT---SEEEEECCTTT-------------
T ss_pred             cCCceEEEECCccCHHHHHHHHHCCCCEEEEecCH-HHhh--cccccccCCCC---CeEEEecCCCC-------------
Confidence            46789999999999999998864 56689999994 4544  33333233333   48888998752             


Q ss_pred             cccccccCCCCCCceeEEEEeCChHHH-----HHHHHHHhHhcCCCeEEEEecc
Q 026513          148 LSSHKIRGISQTEKYDVVIANILLNPL-----LQLADHIVSYAKPGAVVGISGI  196 (237)
Q Consensus       148 ~~~~~~~~~~~~~~fD~I~~n~~~~~~-----~~~l~~~~~~L~~gG~liis~~  196 (237)
                              .. . +||+|++...+++.     ..+++++.+.|+|||++++.+.
T Consensus       244 --------~~-p-~~D~v~~~~vlh~~~d~~~~~~L~~~~~~LkpgG~l~i~e~  287 (348)
T 3lst_A          244 --------EV-P-HADVHVLKRILHNWGDEDSVRILTNCRRVMPAHGRVLVIDA  287 (348)
T ss_dssp             --------CC-C-CCSEEEEESCGGGSCHHHHHHHHHHHHHTCCTTCEEEEEEC
T ss_pred             --------CC-C-CCcEEEEehhccCCCHHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence                    11 2 89999998887644     4789999999999999999754

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=99.21  E-value=1.4e-10  Score=109.34  Aligned_cols=105  Identities=25%  Similarity=0.286  Sum_probs=78.4

Q ss_pred             cCCCeEEEEcCcchHHHHHHHHhC-------------------------------------------CCeEEEEeCCHHH
Q 026513           69 KGGELFLDYGTGSGILGIAAIKFG-------------------------------------------AAMSVGADIDPQA  105 (237)
Q Consensus        69 ~~~~~vLDlG~G~G~~~~~la~~~-------------------------------------------~~~v~~vD~s~~~  105 (237)
                      .++.++||++||+|++++.++..+                                           ..+++|+|+++.+
T Consensus       189 ~~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~~~~~~i~G~Did~~a  268 (703)
T 3v97_A          189 QPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAEYSSHFYGSDSDARV  268 (703)
T ss_dssp             CTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEESCHHH
T ss_pred             CCCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhccccCCccEEEEECCHHH
Confidence            567899999999999999887542                                           1469999999999


Q ss_pred             HHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccccccccccCCCCCCceeEEEEeCChH-------HHHHHH
Q 026513          106 IKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLN-------PLLQLA  178 (237)
Q Consensus       106 i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~~-------~~~~~l  178 (237)
                      ++.|++|+...|+.+   .+.+.++|+.+..                  .....++||+|++|||+.       .+..+.
T Consensus       269 v~~A~~N~~~agv~~---~i~~~~~D~~~~~------------------~~~~~~~~d~Iv~NPPYG~Rlg~~~~l~~ly  327 (703)
T 3v97_A          269 IQRARTNARLAGIGE---LITFEVKDVAQLT------------------NPLPKGPYGTVLSNPPYGERLDSEPALIALH  327 (703)
T ss_dssp             HHHHHHHHHHTTCGG---GEEEEECCGGGCC------------------CSCTTCCCCEEEECCCCCC---CCHHHHHHH
T ss_pred             HHHHHHHHHHcCCCC---ceEEEECChhhCc------------------cccccCCCCEEEeCCCccccccchhHHHHHH
Confidence            999999999999875   4888899987311                  111123899999999962       223333


Q ss_pred             ---HHHhHhcCCCeEEEEe
Q 026513          179 ---DHIVSYAKPGAVVGIS  194 (237)
Q Consensus       179 ---~~~~~~L~~gG~liis  194 (237)
                         ..+.+.+.|||.+++-
T Consensus       328 ~~l~~~lk~~~~g~~~~il  346 (703)
T 3v97_A          328 SLLGRIMKNQFGGWNLSLF  346 (703)
T ss_dssp             HHHHHHHHHHCTTCEEEEE
T ss_pred             HHHHHHHHhhCCCCeEEEE
Confidence               3344445689998874

>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*

Probab=99.19  E-value=1.9e-10  Score=95.41  Aligned_cols=122  Identities=15%  Similarity=0.198  Sum_probs=82.8

Q ss_pred             cccccCCCCchhHHHHHHHHHhh-ccCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcc
Q 026513           45 PGLAFGSGEHATTKLCLLLLRRL-IKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKM  123 (237)
Q Consensus        45 ~~~~f~~g~~~~~~~~~~~l~~~-~~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~  123 (237)
                      +...||.........+...+... ..++.+|||+|||+|.++..+++.+..+|+|+|+|+.+++.++++    +..    
T Consensus         5 ~~k~~GQnfl~d~~i~~~iv~~~~~~~~~~VLDiG~G~G~lt~~L~~~~~~~v~avEid~~~~~~~~~~----~~~----   76 (249)
T 3ftd_A            5 LKKSFGQHLLVSEGVLKKIAEELNIEEGNTVVEVGGGTGNLTKVLLQHPLKKLYVIELDREMVENLKSI----GDE----   76 (249)
T ss_dssp             ---CCCSSCEECHHHHHHHHHHTTCCTTCEEEEEESCHHHHHHHHTTSCCSEEEEECCCHHHHHHHTTS----CCT----
T ss_pred             CCCcccccccCCHHHHHHHHHhcCCCCcCEEEEEcCchHHHHHHHHHcCCCeEEEEECCHHHHHHHHhc----cCC----
Confidence            44455554444444444444432 456889999999999999999988778899999999999999877    122    


Q ss_pred             eEEeccCccccccccccccccccccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhc--CCCeEEEE
Q 026513          124 KLHLVPDRTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYA--KPGAVVGI  193 (237)
Q Consensus       124 ~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L--~~gG~lii  193 (237)
                      ++.++++|+.+...+                ...  .++ .|++|+|++....++.++....  -+.+.+++
T Consensus        77 ~v~~i~~D~~~~~~~----------------~~~--~~~-~vv~NlPy~i~~~il~~ll~~~~~~~~~~~m~  129 (249)
T 3ftd_A           77 RLEVINEDASKFPFC----------------SLG--KEL-KVVGNLPYNVASLIIENTVYNKDCVPLAVFMV  129 (249)
T ss_dssp             TEEEECSCTTTCCGG----------------GSC--SSE-EEEEECCTTTHHHHHHHHHHTGGGCSEEEEEE
T ss_pred             CeEEEEcchhhCChh----------------Hcc--CCc-EEEEECchhccHHHHHHHHhcCCCCceEEEEE
Confidence            388999998743222                111  134 8999999987777766665543  34455555

>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis}

Probab=99.16  E-value=2.4e-11  Score=107.40  Aligned_cols=84  Identities=17%  Similarity=0.122  Sum_probs=67.3

Q ss_pred             hccCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHc--CCCCCcceEEeccCcccccccccccccc
Q 026513           67 LIKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALN--NIGPKKMKLHLVPDRTFTASMNERVDGV  144 (237)
Q Consensus        67 ~~~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~--~~~~~~~~v~~~~~d~~~~~~~~~~~~~  144 (237)
                      .+.+|.+|||+|||+|..++.+++.+ .+|+++|+|+.+++.|++|+..+  ++.    ++.++++|+.+..        
T Consensus        90 ~l~~g~~VLDLgcG~G~~al~LA~~g-~~V~~VD~s~~~l~~Ar~N~~~~~~gl~----~i~~i~~Da~~~L--------  156 (410)
T 3ll7_A           90 FIREGTKVVDLTGGLGIDFIALMSKA-SQGIYIERNDETAVAARHNIPLLLNEGK----DVNILTGDFKEYL--------  156 (410)
T ss_dssp             GSCTTCEEEESSCSSSHHHHHHHTTC-SEEEEEESCHHHHHHHHHHHHHHSCTTC----EEEEEESCGGGSH--------
T ss_pred             hcCCCCEEEEeCCCchHHHHHHHhcC-CEEEEEECCHHHHHHHHHhHHHhccCCC----cEEEEECcHHHhh--------
Confidence            34458999999999999999998874 68999999999999999999988  774    4899999987311        


Q ss_pred             ccccccccccCCCCCCceeEEEEeCChHH
Q 026513          145 VEDLSSHKIRGISQTEKYDVVIANILLNP  173 (237)
Q Consensus       145 ~~~~~~~~~~~~~~~~~fD~I~~n~~~~~  173 (237)
                               ... ...+||+|++|||+..
T Consensus       157 ---------~~~-~~~~fDvV~lDPPrr~  175 (410)
T 3ll7_A          157 ---------PLI-KTFHPDYIYVDPARRS  175 (410)
T ss_dssp             ---------HHH-HHHCCSEEEECCEEC-
T ss_pred             ---------hhc-cCCCceEEEECCCCcC
Confidence                     000 1258999999999644

>3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3}

Probab=99.15  E-value=8.4e-10  Score=88.46  Aligned_cols=134  Identities=12%  Similarity=0.046  Sum_probs=86.6

Q ss_pred             ccCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCC--CCCcceEEeccCcccccc-----cccc
Q 026513           68 IKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNI--GPKKMKLHLVPDRTFTAS-----MNER  140 (237)
Q Consensus        68 ~~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~--~~~~~~v~~~~~d~~~~~-----~~~~  140 (237)
                      +.+.++|||+|||  +-++.+++....+|+.+|.++...+.|++++...++  ..   ++.++.+|..+..     .+..
T Consensus        28 l~~a~~VLEiGtG--ySTl~lA~~~~g~VvtvE~d~~~~~~ar~~l~~~g~~~~~---~I~~~~gda~~~~~wg~p~~~~  102 (202)
T 3cvo_A           28 YEEAEVILEYGSG--GSTVVAAELPGKHVTSVESDRAWARMMKAWLAANPPAEGT---EVNIVWTDIGPTGDWGHPVSDA  102 (202)
T ss_dssp             HHHCSEEEEESCS--HHHHHHHTSTTCEEEEEESCHHHHHHHHHHHHHSCCCTTC---EEEEEECCCSSBCGGGCBSSST
T ss_pred             hhCCCEEEEECch--HHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCCCC---ceEEEEeCchhhhcccccccch
Confidence            3456799999984  677777765468899999999999999999999987  54   5888888864310     0000


Q ss_pred             ccccccccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEecc-CCCCHHHHHHHHh
Q 026513          141 VDGVVEDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGI-LSEQLPHIINRYS  209 (237)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~~-~~~~~~~~~~~~~  209 (237)
                      ..+.+..+.. .+......++||+|+++.....  ..+..+..+|+|||++++..+ ......++...+.
T Consensus       103 ~~~~l~~~~~-~i~~~~~~~~fDlIfIDg~k~~--~~~~~~l~~l~~GG~Iv~DNv~~r~~y~~v~~~~~  169 (202)
T 3cvo_A          103 KWRSYPDYPL-AVWRTEGFRHPDVVLVDGRFRV--GCALATAFSITRPVTLLFDDYSQRRWQHQVEEFLG  169 (202)
T ss_dssp             TGGGTTHHHH-GGGGCTTCCCCSEEEECSSSHH--HHHHHHHHHCSSCEEEEETTGGGCSSGGGGHHHHC
T ss_pred             hhhhHHHHhh-hhhccccCCCCCEEEEeCCCch--hHHHHHHHhcCCCeEEEEeCCcCCcchHHHHHHHh
Confidence            0000000000 0001112368999999986442  555667799999999988764 4444455554444

>2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B*

Probab=99.15  E-value=4.7e-11  Score=109.47  Aligned_cols=123  Identities=18%  Similarity=0.212  Sum_probs=86.2

Q ss_pred             cCCCeEEEEcCcchHHHHHHHHh----C---------------CCeEEEEeCCHHHHHHHHHHHHHcCCCCC-cceEEec
Q 026513           69 KGGELFLDYGTGSGILGIAAIKF----G---------------AAMSVGADIDPQAIKSAHQNAALNNIGPK-KMKLHLV  128 (237)
Q Consensus        69 ~~~~~vLDlG~G~G~~~~~la~~----~---------------~~~v~~vD~s~~~i~~a~~~~~~~~~~~~-~~~v~~~  128 (237)
                      .++.+|+|++||+|.+.+.+++.    +               ..+++|+|+++.+++.|+.++...++... ..++.+.
T Consensus       168 ~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~~nl~l~gi~~~~~~~~~I~  247 (541)
T 2ar0_A          168 QPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIR  247 (541)
T ss_dssp             CTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTCCCBGGGTBSEE
T ss_pred             CCCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHHHHHHHHhCCCccccccCCeE
Confidence            45789999999999999887743    1               13699999999999999999988776530 0014566


Q ss_pred             cCccccccccccccccccccccccccCCCCCCceeEEEEeCChHHH-----------------HHHHHHHhHhcCCCeEE
Q 026513          129 PDRTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLNPL-----------------LQLADHIVSYAKPGAVV  191 (237)
Q Consensus       129 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~~~~-----------------~~~l~~~~~~L~~gG~l  191 (237)
                      ++|.+...                   .....+||+|++|||+...                 ..++..+.+.|+|||++
T Consensus       248 ~gDtL~~~-------------------~~~~~~fD~Vv~NPPf~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~  308 (541)
T 2ar0_A          248 LGNTLGSD-------------------GENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRA  308 (541)
T ss_dssp             ESCTTSHH-------------------HHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEE
T ss_pred             eCCCcccc-------------------cccccCCeEEEECCCcccccchhhHhhcCCCCCchHHHHHHHHHHHhCCCCEE
Confidence            77765211                   0124689999999997432                 25789999999999998


Q ss_pred             EEe---ccC-CC-CHHHHHHHHhh
Q 026513          192 GIS---GIL-SE-QLPHIINRYSE  210 (237)
Q Consensus       192 iis---~~~-~~-~~~~~~~~~~~  210 (237)
                      .+.   +++ .. ....+.+.+..
T Consensus       309 a~V~p~~~L~~~~~~~~iR~~L~~  332 (541)
T 2ar0_A          309 AVVVPDNVLFEGGKGTDIRRDLMD  332 (541)
T ss_dssp             EEEEEHHHHHCCTHHHHHHHHHHH
T ss_pred             EEEecCcceecCcHHHHHHHHHhh
Confidence            874   322 22 23455555544

>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*

Probab=99.15  E-value=1.8e-10  Score=100.70  Aligned_cols=94  Identities=20%  Similarity=0.208  Sum_probs=75.2

Q ss_pred             cCCCeEEEEcCcchHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccc
Q 026513           69 KGGELFLDYGTGSGILGIAAIKF-GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVED  147 (237)
Q Consensus        69 ~~~~~vLDlG~G~G~~~~~la~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  147 (237)
                      .++.+|||+|||+|.++..+++. +..+++++|+ +.+++.|++.      .    .+.++.+|+++             
T Consensus       208 ~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~------~----~v~~~~~d~~~-------------  263 (372)
T 1fp1_D          208 EGISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVIENAPPL------S----GIEHVGGDMFA-------------  263 (372)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCC------T----TEEEEECCTTT-------------
T ss_pred             CCCCEEEEeCCCCcHHHHHHHHHCCCCeEEEeCh-HHHHHhhhhc------C----CCEEEeCCccc-------------
Confidence            45789999999999999999875 4668999999 9898877642      2    27888998863             


Q ss_pred             cccccccCCCCCCceeEEEEeCChHHH-----HHHHHHHhHhcCCCeEEEEecc
Q 026513          148 LSSHKIRGISQTEKYDVVIANILLNPL-----LQLADHIVSYAKPGAVVGISGI  196 (237)
Q Consensus       148 ~~~~~~~~~~~~~~fD~I~~n~~~~~~-----~~~l~~~~~~L~~gG~liis~~  196 (237)
                              .. . .||+|++...+++.     ..+++++.+.|+|||.+++.++
T Consensus       264 --------~~-~-~~D~v~~~~~lh~~~d~~~~~~l~~~~~~L~pgG~l~i~e~  307 (372)
T 1fp1_D          264 --------SV-P-QGDAMILKAVCHNWSDEKCIEFLSNCHKALSPNGKVIIVEF  307 (372)
T ss_dssp             --------CC-C-CEEEEEEESSGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             --------CC-C-CCCEEEEecccccCCHHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence                    11 2 39999999887654     2789999999999999999744

>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}

Probab=99.13  E-value=5.6e-10  Score=94.05  Aligned_cols=116  Identities=21%  Similarity=0.197  Sum_probs=78.2

Q ss_pred             cccccCCCCchhHHHHHHHHHhh-ccCCCeEEEEcCcchHHHHHHHHhCCC---eEEEEeCCHHHHHHHHHHHHHcCCCC
Q 026513           45 PGLAFGSGEHATTKLCLLLLRRL-IKGGELFLDYGTGSGILGIAAIKFGAA---MSVGADIDPQAIKSAHQNAALNNIGP  120 (237)
Q Consensus        45 ~~~~f~~g~~~~~~~~~~~l~~~-~~~~~~vLDlG~G~G~~~~~la~~~~~---~v~~vD~s~~~i~~a~~~~~~~~~~~  120 (237)
                      +.-.||.........+...+... +.++.+|||+|||+|.++..+++.+..   +|+|+|+|+.+++.++++.    .. 
T Consensus        16 ~~k~~GQ~fL~d~~i~~~iv~~~~~~~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~~----~~-   90 (279)
T 3uzu_A           16 ARKRFGQNFLVDHGVIDAIVAAIRPERGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQRF----GE-   90 (279)
T ss_dssp             --CCCSCCEECCHHHHHHHHHHHCCCTTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHHH----GG-
T ss_pred             ccccCCccccCCHHHHHHHHHhcCCCCcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHhc----CC-
Confidence            33445543333333333444332 467889999999999999999977433   3999999999999999883    12 


Q ss_pred             CcceEEeccCccccccccccccccccccccccccCCCC--CCceeEEEEeCChHHHHHHHHHHhHh
Q 026513          121 KKMKLHLVPDRTFTASMNERVDGVVEDLSSHKIRGISQ--TEKYDVVIANILLNPLLQLADHIVSY  184 (237)
Q Consensus       121 ~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~fD~I~~n~~~~~~~~~l~~~~~~  184 (237)
                         ++.++++|+.+...++                ...  ....+.|++|+|+.....++-++...
T Consensus        91 ---~v~~i~~D~~~~~~~~----------------~~~~~~~~~~~vv~NlPY~iss~il~~ll~~  137 (279)
T 3uzu_A           91 ---LLELHAGDALTFDFGS----------------IARPGDEPSLRIIGNLPYNISSPLLFHLMSF  137 (279)
T ss_dssp             ---GEEEEESCGGGCCGGG----------------GSCSSSSCCEEEEEECCHHHHHHHHHHHGGG
T ss_pred             ---CcEEEECChhcCChhH----------------hcccccCCceEEEEccCccccHHHHHHHHhc
Confidence               3889999987543321                111  11456899999998888776666653

>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24

Probab=99.12  E-value=2.4e-12  Score=106.43  Aligned_cols=100  Identities=13%  Similarity=0.221  Sum_probs=74.2

Q ss_pred             ccCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccc
Q 026513           68 IKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVED  147 (237)
Q Consensus        68 ~~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  147 (237)
                      +.++.+|||+|||+|.++..+++.+ .+|+|+|+|+.+++.|++++.  ...    ++.++++|+.+..           
T Consensus        27 ~~~~~~VLDiG~G~G~~~~~l~~~~-~~v~~id~~~~~~~~a~~~~~--~~~----~v~~~~~D~~~~~-----------   88 (245)
T 1yub_A           27 LKETDTVYEIGTGKGHLTTKLAKIS-KQVTSIELDSHLFNLSSEKLK--LNT----RVTLIHQDILQFQ-----------   88 (245)
T ss_dssp             CCSSEEEEECSCCCSSCSHHHHHHS-SEEEESSSSCSSSSSSSCTTT--TCS----EEEECCSCCTTTT-----------
T ss_pred             CCCCCEEEEEeCCCCHHHHHHHHhC-CeEEEEECCHHHHHHHHHHhc--cCC----ceEEEECChhhcC-----------
Confidence            3567899999999999999999886 789999999999999887765  112    4889999986321           


Q ss_pred             cccccccCCCCCCceeEEEEeCChHHH----HHH----------H----HHHhHhcCCCeEEEEe
Q 026513          148 LSSHKIRGISQTEKYDVVIANILLNPL----LQL----------A----DHIVSYAKPGAVVGIS  194 (237)
Q Consensus       148 ~~~~~~~~~~~~~~fD~I~~n~~~~~~----~~~----------l----~~~~~~L~~gG~liis  194 (237)
                              +..+++| .|++|+|+...    ..+          +    +.+.++|+|||.+++.
T Consensus        89 --------~~~~~~f-~vv~n~Py~~~~~~~~~~~~~~~~~~~~lm~q~e~a~rll~~~G~l~v~  144 (245)
T 1yub_A           89 --------FPNKQRY-KIVGNIPYHLSTQIIKKVVFESRASDIYLIVEEGFYKRTLDIHRTLGLL  144 (245)
T ss_dssp             --------CCCSSEE-EEEEECCSSSCHHHHHHHHHHCCCEEEEEEEESSHHHHHHCGGGSHHHH
T ss_pred             --------cccCCCc-EEEEeCCccccHHHHHHHHhCCCCCeEEEEeeHHHHHHHhCCCCchhhh
Confidence                    1113578 88999986322    122          2    5577888888877664

>3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli}

Probab=99.11  E-value=1.3e-09  Score=92.15  Aligned_cols=157  Identities=13%  Similarity=0.098  Sum_probs=104.9

Q ss_pred             hHHHHHHHHHhhccCCCeEEEEcCcchHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHH-cCCCCCcceEEeccCccc
Q 026513           56 TTKLCLLLLRRLIKGGELFLDYGTGSGILGIAAIKF-GAAMSVGADIDPQAIKSAHQNAAL-NNIGPKKMKLHLVPDRTF  133 (237)
Q Consensus        56 ~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~la~~-~~~~v~~vD~s~~~i~~a~~~~~~-~~~~~~~~~v~~~~~d~~  133 (237)
                      ....+........+..++||-||.|.|..+..++++ +..+|+.+|+++.+++.+++.+.. ++.....-+++++.+|..
T Consensus        69 YhE~l~h~~l~~~p~pk~VLIiGgGdG~~~revlk~~~v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~  148 (294)
T 3o4f_A           69 YHEMMTHVPLLAHGHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGV  148 (294)
T ss_dssp             HHHHHHHHHHHHSSCCCEEEEESCTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTT
T ss_pred             HHHHHHHHHHhhCCCCCeEEEECCCchHHHHHHHHcCCcceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHH
Confidence            333333333333455679999999999999999876 578999999999999999998643 221111225788899987


Q ss_pred             cccccccccccccccccccccCCCCCCceeEEEEeCCh------H-HHHHHHHHHhHhcCCCeEEEEe---ccCC-CCHH
Q 026513          134 TASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILL------N-PLLQLADHIVSYAKPGAVVGIS---GILS-EQLP  202 (237)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~------~-~~~~~l~~~~~~L~~gG~liis---~~~~-~~~~  202 (237)
                      ...                  . ....+||+|+.+.+-      . ...++++.+.+.|+|||+++..   .+.. ....
T Consensus       149 ~~l------------------~-~~~~~yDvIi~D~~dp~~~~~~L~t~eFy~~~~~~L~p~Gv~v~q~~sp~~~~~~~~  209 (294)
T 3o4f_A          149 NFV------------------N-QTSQTFDVIISDCTDPIGPGESLFTSAFYEGCKRCLNPGGIFVAQNGVCFLQQEEAI  209 (294)
T ss_dssp             TTT------------------S-CSSCCEEEEEESCCCCCCTTCCSSCCHHHHHHHHTEEEEEEEEEEEEESSSCCHHHH
T ss_pred             HHH------------------h-hccccCCEEEEeCCCcCCCchhhcCHHHHHHHHHHhCCCCEEEEecCCcccChHHHH
Confidence            421                  1 125689999997641      1 1147889999999999999983   3322 2233


Q ss_pred             HHHHHHhhcccccee-----e--ecCCEEEEEEEEc
Q 026513          203 HIINRYSEFLEDILV-----S--EMDDWTCVSGKKK  231 (237)
Q Consensus       203 ~~~~~~~~~~~~~~~-----~--~~~~w~~~~~~~~  231 (237)
                      .+.+.++..|..+..     +  -.|.|...+++|.
T Consensus       210 ~~~~~l~~~F~~v~~~~~~vPty~~g~w~f~~as~~  245 (294)
T 3o4f_A          210 DSHRKLSHYFSDVGFYQAAIPTYYGGIMTFAWATDN  245 (294)
T ss_dssp             HHHHHHHHHCSEEEEEEECCTTSSSSCEEEEEEESC
T ss_pred             HHHHHHHhhCCceeeeeeeeccCCCcceeheeEECC
Confidence            445555554544322     2  2578999999875

>3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus}

Probab=99.10  E-value=1.7e-10  Score=105.64  Aligned_cols=138  Identities=20%  Similarity=0.188  Sum_probs=94.4

Q ss_pred             hhHHHHHHHHHhh--ccCCCeEEEEcCcchHHHHHHHHh----CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEec
Q 026513           55 ATTKLCLLLLRRL--IKGGELFLDYGTGSGILGIAAIKF----GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLV  128 (237)
Q Consensus        55 ~~~~~~~~~l~~~--~~~~~~vLDlG~G~G~~~~~la~~----~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~  128 (237)
                      +..+++.+.+...  ..++.+|+|.+||+|.+.+.+++.    +..+++|+|+++.++..|+.|+...++...  .+.+.
T Consensus       204 ~Vv~lmv~ll~~~~~~~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~--~~~I~  281 (542)
T 3lkd_A          204 PVAKLMTQIAFLGREDKQGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILHGVPIE--NQFLH  281 (542)
T ss_dssp             HHHHHHHHHHHTTCTTCTTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHTTCCGG--GEEEE
T ss_pred             HHHHHHHHHHhcccCCCCCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHcCCCcC--ccceE
Confidence            3444444444321  236789999999999998887764    356799999999999999999998887421  26677


Q ss_pred             cCccccccccccccccccccccccccCCCCCCceeEEEEeCChHH----------------H----------HHHHHHHh
Q 026513          129 PDRTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLNP----------------L----------LQLADHIV  182 (237)
Q Consensus       129 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~~~----------------~----------~~~l~~~~  182 (237)
                      ++|.+....                 ......+||+|++|||+..                +          -.++..+.
T Consensus       282 ~gDtL~~d~-----------------p~~~~~~fD~IvaNPPf~~~~~~~~~~~~d~rf~~~G~~~~~s~~~~~Fl~~~l  344 (542)
T 3lkd_A          282 NADTLDEDW-----------------PTQEPTNFDGVLMNPPYSAKWSASSGFMDDPRFSPFGKLAPKSKADFAFLLHGY  344 (542)
T ss_dssp             ESCTTTSCS-----------------CCSSCCCBSEEEECCCTTCCCCCCGGGGGSTTTGGGSSCCCTTCCHHHHHHHHH
T ss_pred             ecceecccc-----------------cccccccccEEEecCCcCCccccchhhhhhhhhhhhhhcCCCchhhHHHHHHHH
Confidence            888763100                 0022568999999999521                0          13688999


Q ss_pred             HhcC-CCeEEEEe---ccC-CCC-HHHHHHHHhhc
Q 026513          183 SYAK-PGAVVGIS---GIL-SEQ-LPHIINRYSEF  211 (237)
Q Consensus       183 ~~L~-~gG~liis---~~~-~~~-~~~~~~~~~~~  211 (237)
                      +.|+ +||++.+.   +++ ... ...+.+.+...
T Consensus       345 ~~Lk~~gGr~a~VlP~g~Lf~~~~~~~iRk~Lle~  379 (542)
T 3lkd_A          345 YHLKQDNGVMAIVLPHGVLFRGNAEGTIRKALLEE  379 (542)
T ss_dssp             HTBCTTTCEEEEEEETHHHHCCTHHHHHHHHHHHT
T ss_pred             HHhCCCceeEEEEecchHhhCCchhHHHHHHHHhC
Confidence            9999 99998663   333 222 35566665543

>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae}

Probab=99.09  E-value=4.7e-11  Score=99.57  Aligned_cols=84  Identities=14%  Similarity=0.156  Sum_probs=65.6

Q ss_pred             ccCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCH-------HHHHHHHHHHHHcCCCCCcceEEeccCcccccccccc
Q 026513           68 IKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDP-------QAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNER  140 (237)
Q Consensus        68 ~~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~-------~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~  140 (237)
                      ..++.+|||+|||+|.+++.++..+ .+|+++|+|+       .+++.|++|+..+++.+   ++.++++|..+..    
T Consensus        81 ~~~~~~VLDlgcG~G~~a~~lA~~g-~~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~~---ri~~~~~d~~~~l----  152 (258)
T 2r6z_A           81 HTAHPTVWDATAGLGRDSFVLASLG-LTVTAFEQHPAVACLLSDGIRRALLNPETQDTAA---RINLHFGNAAEQM----  152 (258)
T ss_dssp             GGGCCCEEETTCTTCHHHHHHHHTT-CCEEEEECCHHHHHHHHHHHHHHHHSHHHHHHHT---TEEEEESCHHHHH----
T ss_pred             cCCcCeEEEeeCccCHHHHHHHHhC-CEEEEEECChhhhHHHHHHHHHHHhHHHhhCCcc---CeEEEECCHHHHH----
Confidence            3457899999999999999999875 5799999999       99999999988877654   4889999976311    


Q ss_pred             ccccccccccccccCCCCC--CceeEEEEeCChHH
Q 026513          141 VDGVVEDLSSHKIRGISQT--EKYDVVIANILLNP  173 (237)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~--~~fD~I~~n~~~~~  173 (237)
                                   ..+ ++  .+||+|++||++.+
T Consensus       153 -------------~~~-~~~~~~fD~V~~dP~~~~  173 (258)
T 2r6z_A          153 -------------PAL-VKTQGKPDIVYLDPMYPE  173 (258)
T ss_dssp             -------------HHH-HHHHCCCSEEEECCCC--
T ss_pred             -------------Hhh-hccCCCccEEEECCCCCC
Confidence                         001 12  58999999998654

>3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus}

Probab=99.09  E-value=6.4e-10  Score=104.70  Aligned_cols=123  Identities=11%  Similarity=0.041  Sum_probs=81.7

Q ss_pred             CCCeEEEEcCcchHHHHHHHHhC----CCeEEEEeCCHHHHHHH--HHHHHHcCCCCCcceEEeccCccccccccccccc
Q 026513           70 GGELFLDYGTGSGILGIAAIKFG----AAMSVGADIDPQAIKSA--HQNAALNNIGPKKMKLHLVPDRTFTASMNERVDG  143 (237)
Q Consensus        70 ~~~~vLDlG~G~G~~~~~la~~~----~~~v~~vD~s~~~i~~a--~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~  143 (237)
                      ++.+|||+|||+|.+.+.+++..    ..+++|+|+++.+++.|  +.++..+.+....-...+...|..+.        
T Consensus       321 ~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN~LlhGi~~~~I~~dD~L~~--------  392 (878)
T 3s1s_A          321 EDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFPQLVSSNNAPTITGEDVCSL--------  392 (878)
T ss_dssp             TTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTSTTTCBTTBCCEEECCCGGGC--------
T ss_pred             CCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHhhhhcCCCcceEEecchhcc--------
Confidence            57899999999999999988652    25799999999999999  65655433321111123334444321        


Q ss_pred             cccccccccccCCCCCCceeEEEEeCChHH--------------------------------HHHHHHHHhHhcCCCeEE
Q 026513          144 VVEDLSSHKIRGISQTEKYDVVIANILLNP--------------------------------LLQLADHIVSYAKPGAVV  191 (237)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~fD~I~~n~~~~~--------------------------------~~~~l~~~~~~L~~gG~l  191 (237)
                                 ......+||+|++|||+..                                ...++..+.++|++||++
T Consensus       393 -----------~~~~~~kFDVVIgNPPYg~~~~~~~e~kd~~~r~~~g~p~~p~s~~G~~DLy~aFIe~Al~lLKpGGrL  461 (878)
T 3s1s_A          393 -----------NPEDFANVSVVVMNPPYVSGVTDPAIKRKFAHKIIQLTGNRPQTLFGQIGVEALFLELVTELVQDGTVI  461 (878)
T ss_dssp             -----------CGGGGTTEEEEEECCBCCSSCCCHHHHHHHHHHHHHHHSSCCSSCSSSCCHHHHHHHHHHHHSCTTCEE
T ss_pred             -----------cccccCCCCEEEECCCccccccchhhhhhHHHHhhhhccccccccccccchHHHHHHHHHHhcCCCcEE
Confidence                       1112468999999999610                                223678899999999999


Q ss_pred             EEe---ccCCC---CHHHHHHHHhhc
Q 026513          192 GIS---GILSE---QLPHIINRYSEF  211 (237)
Q Consensus       192 iis---~~~~~---~~~~~~~~~~~~  211 (237)
                      .+.   .++..   ....+.+.+...
T Consensus       462 AfIlP~s~Lf~sg~~~kkLRk~LLe~  487 (878)
T 3s1s_A          462 SAIMPKQYLTAQGNESKAFREFLVGN  487 (878)
T ss_dssp             EEEEETHHHHCCSHHHHHHHHHHTTT
T ss_pred             EEEEChHHhccCChHHHHHHHHHHhC
Confidence            874   44432   245666666544

>3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei}

Probab=99.08  E-value=2.2e-10  Score=104.98  Aligned_cols=138  Identities=20%  Similarity=0.201  Sum_probs=94.0

Q ss_pred             CCchhHHHHHHHHHhhccC-CCeEEEEcCcchHHHHHHHHh--------C--------CCeEEEEeCCHHHHHHHHHHHH
Q 026513           52 GEHATTKLCLLLLRRLIKG-GELFLDYGTGSGILGIAAIKF--------G--------AAMSVGADIDPQAIKSAHQNAA  114 (237)
Q Consensus        52 g~~~~~~~~~~~l~~~~~~-~~~vLDlG~G~G~~~~~la~~--------~--------~~~v~~vD~s~~~i~~a~~~~~  114 (237)
                      |.+-|.+.+.+.+...+.+ ..+|+|.+||+|.+.+.+++.        .        ...++|+|+++.+++.|+.|+.
T Consensus       225 G~fyTP~~Vv~lmv~ll~p~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~Nl~  304 (544)
T 3khk_A          225 GQYYTPKSIVTLIVEMLEPYKGRVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMNMV  304 (544)
T ss_dssp             TTTCCCHHHHHHHHHHHCCCSEEEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHHHH
T ss_pred             CeEeCCHHHHHHHHHHHhcCCCeEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHHHHH
Confidence            4444445555554443222 239999999999998876532        1        3579999999999999999999


Q ss_pred             HcCCCCCcceEEeccCccccccccccccccccccccccccCCCCCCceeEEEEeCChHHH--------------------
Q 026513          115 LNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLNPL--------------------  174 (237)
Q Consensus       115 ~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~~~~--------------------  174 (237)
                      ..++..   .+.+.++|.+..                   ......+||+|++|||+...                    
T Consensus       305 l~gi~~---~i~i~~gDtL~~-------------------~~~~~~~fD~Iv~NPPf~~~~~~~~~~~~d~r~~~g~~~~  362 (544)
T 3khk_A          305 IRGIDF---NFGKKNADSFLD-------------------DQHPDLRADFVMTNPPFNMKDWWHEKLADDPRWTINTNGE  362 (544)
T ss_dssp             HTTCCC---BCCSSSCCTTTS-------------------CSCTTCCEEEEEECCCSSCCSCCCGGGTTCGGGEECCC--
T ss_pred             HhCCCc---ccceeccchhcC-------------------cccccccccEEEECCCcCCccccchhhhhhhhhhcCcccc
Confidence            888764   244477886521                   11234689999999996420                    


Q ss_pred             ------------HHHHHHHhHhcCCCeEEEEe---ccCC-C--CHHHHHHHHhhc
Q 026513          175 ------------LQLADHIVSYAKPGAVVGIS---GILS-E--QLPHIINRYSEF  211 (237)
Q Consensus       175 ------------~~~l~~~~~~L~~gG~liis---~~~~-~--~~~~~~~~~~~~  211 (237)
                                  -.++..+.+.|+|||++.+.   +++. .  ....+.+.+...
T Consensus       363 ~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~aiVlP~g~L~~~~~~~~~iRk~Lle~  417 (544)
T 3khk_A          363 KRILTPPTGNANFAWMLHMLYHLAPTGSMALLLANGSMSSNTNNEGEIRKTLVEQ  417 (544)
T ss_dssp             CEECCCCTTCTHHHHHHHHHHTEEEEEEEEEEEETHHHHCCGGGHHHHHHHHHHT
T ss_pred             cccccCCCcchhHHHHHHHHHHhccCceEEEEecchhhhcCcchHHHHHHHHHhC
Confidence                        14789999999999997764   3332 2  345666666554

>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*

Probab=99.08  E-value=4.8e-10  Score=97.96  Aligned_cols=94  Identities=15%  Similarity=0.202  Sum_probs=74.4

Q ss_pred             cCCCeEEEEcCcchHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccc
Q 026513           69 KGGELFLDYGTGSGILGIAAIKF-GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVED  147 (237)
Q Consensus        69 ~~~~~vLDlG~G~G~~~~~la~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  147 (237)
                      .++.+|||+|||+|.++..+++. +..+++++|+ +.+++.|++.      .    ++.++.+|+++             
T Consensus       202 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~----~v~~~~~d~~~-------------  257 (368)
T 3reo_A          202 EGLTTIVDVGGGTGAVASMIVAKYPSINAINFDL-PHVIQDAPAF------S----GVEHLGGDMFD-------------  257 (368)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCC------T----TEEEEECCTTT-------------
T ss_pred             cCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeh-HHHHHhhhhc------C----CCEEEecCCCC-------------
Confidence            45679999999999999998864 6778999999 8888777632      2    38888999873             


Q ss_pred             cccccccCCCCCCceeEEEEeCChHHH-----HHHHHHHhHhcCCCeEEEEecc
Q 026513          148 LSSHKIRGISQTEKYDVVIANILLNPL-----LQLADHIVSYAKPGAVVGISGI  196 (237)
Q Consensus       148 ~~~~~~~~~~~~~~fD~I~~n~~~~~~-----~~~l~~~~~~L~~gG~liis~~  196 (237)
                              ..+..  |+|++...+|+.     .++++++.+.|+|||++++.++
T Consensus       258 --------~~p~~--D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~  301 (368)
T 3reo_A          258 --------GVPKG--DAIFIKWICHDWSDEHCLKLLKNCYAALPDHGKVIVAEY  301 (368)
T ss_dssp             --------CCCCC--SEEEEESCGGGBCHHHHHHHHHHHHHHSCTTCEEEEEEC
T ss_pred             --------CCCCC--CEEEEechhhcCCHHHHHHHHHHHHHHcCCCCEEEEEEe
Confidence                    11222  999998888643     3679999999999999999754

>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*

Probab=99.04  E-value=5.6e-10  Score=96.81  Aligned_cols=95  Identities=20%  Similarity=0.240  Sum_probs=76.0

Q ss_pred             ccCCCeEEEEcCcchHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccc
Q 026513           68 IKGGELFLDYGTGSGILGIAAIKF-GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVE  146 (237)
Q Consensus        68 ~~~~~~vLDlG~G~G~~~~~la~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  146 (237)
                      +.++.+|||+|||+|.++..+++. +..+++++|+ +.+++.|++.      .    .+.++.+|+++            
T Consensus       186 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~----~v~~~~~d~~~------------  242 (352)
T 1fp2_A          186 FDGLESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVENLSGS------N----NLTYVGGDMFT------------  242 (352)
T ss_dssp             HTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCB------T----TEEEEECCTTT------------
T ss_pred             cccCceEEEeCCCccHHHHHHHHHCCCCeEEEeeC-HHHHhhcccC------C----CcEEEeccccC------------
Confidence            356689999999999999999865 5678999999 9998877641      2    27788898762            


Q ss_pred             ccccccccCCCCCCceeEEEEeCChHHH-----HHHHHHHhHhcCC---CeEEEEecc
Q 026513          147 DLSSHKIRGISQTEKYDVVIANILLNPL-----LQLADHIVSYAKP---GAVVGISGI  196 (237)
Q Consensus       147 ~~~~~~~~~~~~~~~fD~I~~n~~~~~~-----~~~l~~~~~~L~~---gG~liis~~  196 (237)
                               ..  ..||+|++...+++.     ..+++++.+.|+|   ||++++.+.
T Consensus       243 ---------~~--p~~D~v~~~~~lh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~  289 (352)
T 1fp2_A          243 ---------SI--PNADAVLLKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDM  289 (352)
T ss_dssp             ---------CC--CCCSEEEEESCGGGSCHHHHHHHHHHHHHHHSGGGCCCEEEEEEC
T ss_pred             ---------CC--CCccEEEeehhhccCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEe
Confidence                     11  149999999887644     2789999999999   999999755

>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*

Probab=99.04  E-value=5.1e-10  Score=97.70  Aligned_cols=95  Identities=19%  Similarity=0.198  Sum_probs=75.2

Q ss_pred             cCCCeEEEEcCcchHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccc
Q 026513           69 KGGELFLDYGTGSGILGIAAIKF-GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVED  147 (237)
Q Consensus        69 ~~~~~vLDlG~G~G~~~~~la~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  147 (237)
                      .++.+|||+|||+|.++..+++. +..+++++|+ +.+++.|++.      .    ++.++.+|+++             
T Consensus       200 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~----~v~~~~~D~~~-------------  255 (364)
T 3p9c_A          200 EGLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDL-PHVISEAPQF------P----GVTHVGGDMFK-------------  255 (364)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCC------T----TEEEEECCTTT-------------
T ss_pred             cCCCEEEEeCCCCCHHHHHHHHHCCCCeEEEecC-HHHHHhhhhc------C----CeEEEeCCcCC-------------
Confidence            45689999999999999998864 6778999999 8888776642      2    38899999873             


Q ss_pred             cccccccCCCCCCceeEEEEeCChHHH-----HHHHHHHhHhcCCCeEEEEeccC
Q 026513          148 LSSHKIRGISQTEKYDVVIANILLNPL-----LQLADHIVSYAKPGAVVGISGIL  197 (237)
Q Consensus       148 ~~~~~~~~~~~~~~fD~I~~n~~~~~~-----~~~l~~~~~~L~~gG~liis~~~  197 (237)
                              ..+.+  |+|++...+|..     .++++++.+.|+|||++++.++.
T Consensus       256 --------~~p~~--D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e~~  300 (364)
T 3p9c_A          256 --------EVPSG--DTILMKWILHDWSDQHCATLLKNCYDALPAHGKVVLVQCI  300 (364)
T ss_dssp             --------CCCCC--SEEEEESCGGGSCHHHHHHHHHHHHHHSCTTCEEEEEECC
T ss_pred             --------CCCCC--CEEEehHHhccCCHHHHHHHHHHHHHHcCCCCEEEEEEec
Confidence                    11222  999998887643     46799999999999999997553

>2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A

Probab=99.02  E-value=3.3e-10  Score=88.38  Aligned_cols=105  Identities=8%  Similarity=0.104  Sum_probs=75.3

Q ss_pred             ccCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccc
Q 026513           68 IKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVED  147 (237)
Q Consensus        68 ~~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  147 (237)
                      +.+|.+|||+|||.               +++|+|+.|++.|+++...    +    +.+.++|+.+...          
T Consensus        10 ~~~g~~vL~~~~g~---------------v~vD~s~~ml~~a~~~~~~----~----~~~~~~d~~~~~~----------   56 (176)
T 2ld4_A           10 ISAGQFVAVVWDKS---------------SPVEALKGLVDKLQALTGN----E----GRVSVENIKQLLQ----------   56 (176)
T ss_dssp             CCTTSEEEEEECTT---------------SCHHHHHHHHHHHHHHTTT----T----SEEEEEEGGGGGG----------
T ss_pred             CCCCCEEEEecCCc---------------eeeeCCHHHHHHHHHhccc----C----cEEEEechhcCcc----------
Confidence            57899999999986               2399999999999987532    1    5566777653110          


Q ss_pred             cccccccCCCCCCceeEEEEeCChHHH----HHHHHHHhHhcCCCeEEEEeccC---------CCCHHHHHHHHhhc-c
Q 026513          148 LSSHKIRGISQTEKYDVVIANILLNPL----LQLADHIVSYAKPGAVVGISGIL---------SEQLPHIINRYSEF-L  212 (237)
Q Consensus       148 ~~~~~~~~~~~~~~fD~I~~n~~~~~~----~~~l~~~~~~L~~gG~liis~~~---------~~~~~~~~~~~~~~-~  212 (237)
                             ...++++||+|+++..++++    ..+++++.++|||||++++....         .....++...+... |
T Consensus        57 -------~~~~~~~fD~V~~~~~l~~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf  128 (176)
T 2ld4_A           57 -------SAHKESSFDIILSGLVPGSTTLHSAEILAEIARILRPGGCLFLKEPVETAVDNNSKVKTASKLCSALTLSGL  128 (176)
T ss_dssp             -------GCCCSSCEEEEEECCSTTCCCCCCHHHHHHHHHHEEEEEEEEEEEEEESSSCSSSSSCCHHHHHHHHHHTTC
T ss_pred             -------ccCCCCCEeEEEECChhhhcccCHHHHHHHHHHHCCCCEEEEEEcccccccccccccCCHHHHHHHHHHCCC
Confidence                   00136789999998877665    67899999999999999996321         12256676766643 6

>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*

Probab=99.02  E-value=1.6e-09  Score=94.10  Aligned_cols=94  Identities=20%  Similarity=0.198  Sum_probs=74.6

Q ss_pred             cCCCeEEEEcCcchHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccc
Q 026513           69 KGGELFLDYGTGSGILGIAAIKF-GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVED  147 (237)
Q Consensus        69 ~~~~~vLDlG~G~G~~~~~la~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  147 (237)
                      .++.+|||+|||+|.++..+++. +..+++++|+ +.+++.|++      ..    .+.++.+|+++             
T Consensus       192 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~----~v~~~~~d~~~-------------  247 (358)
T 1zg3_A          192 EGLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQ-PQVVGNLTG------NE----NLNFVGGDMFK-------------  247 (358)
T ss_dssp             HTCSEEEEETCTTSHHHHHHHHHCTTSEEEEEEC-HHHHSSCCC------CS----SEEEEECCTTT-------------
T ss_pred             cCCCEEEEECCCcCHHHHHHHHHCCCCeEEEecc-HHHHhhccc------CC----CcEEEeCccCC-------------
Confidence            46689999999999999999865 5668999999 788876653      12    27888898763             


Q ss_pred             cccccccCCCCCCceeEEEEeCChHHH-----HHHHHHHhHhcCC---CeEEEEecc
Q 026513          148 LSSHKIRGISQTEKYDVVIANILLNPL-----LQLADHIVSYAKP---GAVVGISGI  196 (237)
Q Consensus       148 ~~~~~~~~~~~~~~fD~I~~n~~~~~~-----~~~l~~~~~~L~~---gG~liis~~  196 (237)
                              .  -.+||+|++..++++.     ..+++++.+.|+|   ||++++.+.
T Consensus       248 --------~--~~~~D~v~~~~vlh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~  294 (358)
T 1zg3_A          248 --------S--IPSADAVLLKWVLHDWNDEQSLKILKNSKEAISHKGKDGKVIIIDI  294 (358)
T ss_dssp             --------C--CCCCSEEEEESCGGGSCHHHHHHHHHHHHHHTGGGGGGCEEEEEEC
T ss_pred             --------C--CCCceEEEEcccccCCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEe
Confidence                    1  1259999999887653     3789999999999   999999654

>4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A*

Probab=98.96  E-value=9e-09  Score=89.52  Aligned_cols=108  Identities=18%  Similarity=0.196  Sum_probs=82.7

Q ss_pred             ccCCCeEEEEcCcchHHHHHHHHhC-CCeEEEEeCCHHHHHHHHHHHHHcCCCCCc--ceEEeccCcccccccccccccc
Q 026513           68 IKGGELFLDYGTGSGILGIAAIKFG-AAMSVGADIDPQAIKSAHQNAALNNIGPKK--MKLHLVPDRTFTASMNERVDGV  144 (237)
Q Consensus        68 ~~~~~~vLDlG~G~G~~~~~la~~~-~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~--~~v~~~~~d~~~~~~~~~~~~~  144 (237)
                      .++|.+|||+++|+|+-+..++..+ ...|+++|+++.-++..++++...+.....  ..+.+...|.....        
T Consensus       146 ~~pg~~VLD~CAaPGGKT~~la~~~~~~~l~A~D~~~~R~~~l~~~l~r~~~~~~~~~~~v~v~~~D~~~~~--------  217 (359)
T 4fzv_A          146 LQPGDIVLDLCAAPGGKTLALLQTGCCRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDGRKWG--------  217 (359)
T ss_dssp             CCTTEEEEESSCTTCHHHHHHHHTTCEEEEEEECSCHHHHHHHHHHHHHHSCTTTTTSSSEEEECCCGGGHH--------
T ss_pred             CCCCCEEEEecCCccHHHHHHHHhcCCCcEEEEcCCHHHHHHHHHHHHHhhhhhhccCCceEEEeCchhhcc--------
Confidence            5789999999999999999888764 357999999999999999999887654211  13666777765211        


Q ss_pred             ccccccccccCCCCCCceeEEEEeCCh---------------------------HHHHHHHHHHhHhcCCCeEEEEe
Q 026513          145 VEDLSSHKIRGISQTEKYDVVIANILL---------------------------NPLLQLADHIVSYAKPGAVVGIS  194 (237)
Q Consensus       145 ~~~~~~~~~~~~~~~~~fD~I~~n~~~---------------------------~~~~~~l~~~~~~L~~gG~liis  194 (237)
                                .. ..++||.|++++|.                           ....+++..+..+|||||+|+.|
T Consensus       218 ----------~~-~~~~fD~VLlDaPCSg~g~g~~r~~~~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lkpGG~LVYs  283 (359)
T 4fzv_A          218 ----------EL-EGDTYDRVLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATKPGGHVVYS  283 (359)
T ss_dssp             ----------HH-STTCEEEEEEECCCCCHHHHTTCCTTCTTSGGGHHHHHTHHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred             ----------hh-ccccCCEEEECCccCCCCCcccccChhhhhhCCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEE
Confidence                      11 24689999999982                           11246789999999999999987

>1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A*

Probab=98.96  E-value=8.5e-10  Score=93.91  Aligned_cols=86  Identities=16%  Similarity=0.241  Sum_probs=65.8

Q ss_pred             ccCCCeEEEEcCcchHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccc
Q 026513           68 IKGGELFLDYGTGSGILGIAAIKF-GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVE  146 (237)
Q Consensus        68 ~~~~~~vLDlG~G~G~~~~~la~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  146 (237)
                      +.++.+|||+|||+|.++..+++. +..+|+|+|+|+.+++.|++++..++ .    ++.++++|+.+..      ..+ 
T Consensus        24 ~~~g~~vLD~g~G~G~~s~~la~~~~~~~VigvD~d~~al~~A~~~~~~~g-~----~v~~v~~d~~~l~------~~l-   91 (301)
T 1m6y_A           24 PEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFS-D----RVSLFKVSYREAD------FLL-   91 (301)
T ss_dssp             CCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGT-T----TEEEEECCGGGHH------HHH-
T ss_pred             CCCCCEEEEEeCCcCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcC-C----cEEEEECCHHHHH------HHH-
Confidence            457889999999999999999876 46789999999999999999988776 3    3889999975311      000 


Q ss_pred             ccccccccCCCCCCceeEEEEeCChHH
Q 026513          147 DLSSHKIRGISQTEKYDVVIANILLNP  173 (237)
Q Consensus       147 ~~~~~~~~~~~~~~~fD~I~~n~~~~~  173 (237)
                             ... ...+||.|++|++...
T Consensus        92 -------~~~-g~~~~D~Vl~D~gvSs  110 (301)
T 1m6y_A           92 -------KTL-GIEKVDGILMDLGVST  110 (301)
T ss_dssp             -------HHT-TCSCEEEEEEECSCCH
T ss_pred             -------Hhc-CCCCCCEEEEcCccch
Confidence                   000 1157999999997543

>3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A*

Probab=98.94  E-value=7.3e-09  Score=90.21  Aligned_cols=147  Identities=17%  Similarity=0.164  Sum_probs=97.3

Q ss_pred             cCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHc---CCCCC-cceEEeccCcccccccccccccc
Q 026513           69 KGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALN---NIGPK-KMKLHLVPDRTFTASMNERVDGV  144 (237)
Q Consensus        69 ~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~---~~~~~-~~~v~~~~~d~~~~~~~~~~~~~  144 (237)
                      .+.++||-+|.|.|..+..+.+++..+|+.+|+++.+++.+++.+...   ...+. .-+++++.+|.....        
T Consensus       204 ~~pkrVLIIGgGdG~~~revlkh~~~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl--------  275 (381)
T 3c6k_A          204 YTGKDVLILGGGDGGILCEIVKLKPKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVL--------  275 (381)
T ss_dssp             CTTCEEEEEECTTCHHHHHHHTTCCSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHH--------
T ss_pred             CCCCeEEEECCCcHHHHHHHHhcCCceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHHH--------
Confidence            356899999999999999999887789999999999999999875321   11111 113677788876321        


Q ss_pred             ccccccccccCCCCCCceeEEEEeCC--------h-----HHHHHHHHHHhHhcCCCeEEEEec---cCCCCHHHHHHHH
Q 026513          145 VEDLSSHKIRGISQTEKYDVVIANIL--------L-----NPLLQLADHIVSYAKPGAVVGISG---ILSEQLPHIINRY  208 (237)
Q Consensus       145 ~~~~~~~~~~~~~~~~~fD~I~~n~~--------~-----~~~~~~l~~~~~~L~~gG~liis~---~~~~~~~~~~~~~  208 (237)
                       +..       .....+||+|+.+.+        .     -...++++.+.+.|+|||+++..+   +..+....+.+.+
T Consensus       276 -~~~-------~~~~~~yDvIIvDl~D~~~s~~p~g~a~~Lft~eFy~~~~~~L~p~GVlv~Q~~s~~~~~~~~~i~~tl  347 (381)
T 3c6k_A          276 -KRY-------AKEGREFDYVINDLTAVPISTSPEEDSTWEFLRLILDLSMKVLKQDGKYFTQGNCVNLTEALSLYEEQL  347 (381)
T ss_dssp             -HHH-------HHHTCCEEEEEEECCSSCCCCC----CHHHHHHHHHHHHHHTEEEEEEEEEEEEETTCHHHHHHHHHHH
T ss_pred             -Hhh-------hhccCceeEEEECCCCCcccCcccCcchHHHHHHHHHHHHHhcCCCCEEEEecCCCcchhHHHHHHHHH
Confidence             110       011468999999842        1     122578899999999999998742   2222233444455


Q ss_pred             hhccccce-------e-eecCCEEEEEEEEc
Q 026513          209 SEFLEDIL-------V-SEMDDWTCVSGKKK  231 (237)
Q Consensus       209 ~~~~~~~~-------~-~~~~~w~~~~~~~~  231 (237)
                      +..|..+.       + ...+.|....++|+
T Consensus       348 ~~vF~~v~~~~~~~~VPSy~~~W~F~~aSK~  378 (381)
T 3c6k_A          348 GRLYCPVEFSKEIVCVPSYLELWVFYTVWKK  378 (381)
T ss_dssp             TTSSSCEEEEEEEECCGGGSSCEEEEEEEEC
T ss_pred             HHhCCcceEeeEEEEecCCCCceeeeEEECC
Confidence            54343222       1 23478999998875

>4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A*

Probab=98.93  E-value=1.4e-09  Score=100.78  Aligned_cols=98  Identities=17%  Similarity=0.200  Sum_probs=75.9

Q ss_pred             CCeEEEEcCcchHHHHHHH---HhCCC--eEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccc
Q 026513           71 GELFLDYGTGSGILGIAAI---KFGAA--MSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVV  145 (237)
Q Consensus        71 ~~~vLDlG~G~G~~~~~la---~~~~~--~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  145 (237)
                      +..|+|+|||+|.++...+   ..+..  +|+|+|.|+ +...|++..+.|+..+   +|+++++|+.            
T Consensus       358 ~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp-~A~~a~~~v~~N~~~d---kVtVI~gd~e------------  421 (637)
T 4gqb_A          358 VQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNP-NAVVTLENWQFEEWGS---QVTVVSSDMR------------  421 (637)
T ss_dssp             EEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCH-HHHHHHHHHHHHTTGG---GEEEEESCTT------------
T ss_pred             CcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCH-HHHHHHHHHHhccCCC---eEEEEeCcce------------
Confidence            3579999999999855443   34333  689999998 5667888999999887   6999999986            


Q ss_pred             cccccccccCCCCCCceeEEEEeCC-----hHHHHHHHHHHhHhcCCCeEEEE
Q 026513          146 EDLSSHKIRGISQTEKYDVVIANIL-----LNPLLQLADHIVSYAKPGAVVGI  193 (237)
Q Consensus       146 ~~~~~~~~~~~~~~~~fD~I~~n~~-----~~~~~~~l~~~~~~L~~gG~lii  193 (237)
                               .+...+++|+||+-..     .+.+..++....++|||||.++=
T Consensus       422 ---------ev~LPEKVDIIVSEwMG~fLl~E~mlevL~Ardr~LKPgGimiP  465 (637)
T 4gqb_A          422 ---------EWVAPEKADIIVSELLGSFADNELSPECLDGAQHFLKDDGVSIP  465 (637)
T ss_dssp             ---------TCCCSSCEEEEECCCCBTTBGGGCHHHHHHHHGGGEEEEEEEES
T ss_pred             ---------eccCCcccCEEEEEcCcccccccCCHHHHHHHHHhcCCCcEEcc
Confidence                     3334579999999654     24455777888899999998863

>2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus}

Probab=98.90  E-value=2.4e-08  Score=84.07  Aligned_cols=140  Identities=10%  Similarity=0.002  Sum_probs=94.4

Q ss_pred             CCeEEEEcCcchHHHHHHHHh------CCCeEEEEeCCHH--------------------------HHHHHHHHHHHcCC
Q 026513           71 GELFLDYGTGSGILGIAAIKF------GAAMSVGADIDPQ--------------------------AIKSAHQNAALNNI  118 (237)
Q Consensus        71 ~~~vLDlG~G~G~~~~~la~~------~~~~v~~vD~s~~--------------------------~i~~a~~~~~~~~~  118 (237)
                      ..+|||+|+..|..++.++..      ...+|+++|..+.                          .++.+++++...++
T Consensus       107 pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~~~~ar~n~~~~gl  186 (282)
T 2wk1_A          107 PGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVSEEEVRRNFRNYDL  186 (282)
T ss_dssp             CCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCCHHHHHHHHHHTTC
T ss_pred             CCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccccchhHHHHHHHHHHHcCC
Confidence            458999999999988877632      2578999996421                          46778999999887


Q ss_pred             C-CCcceEEeccCccccccccccccccccccccccccCCCCCCceeEEEEeCCh-HHHHHHHHHHhHhcCCCeEEEEecc
Q 026513          119 G-PKKMKLHLVPDRTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILL-NPLLQLADHIVSYAKPGAVVGISGI  196 (237)
Q Consensus       119 ~-~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~-~~~~~~l~~~~~~L~~gG~liis~~  196 (237)
                      . .   ++.++.|++.+.                 +... +.++||+|+.+.-. ......+..+...|+|||++++.++
T Consensus       187 ~~~---~I~li~Gda~et-----------------L~~~-~~~~~d~vfIDaD~y~~~~~~Le~~~p~L~pGGiIv~DD~  245 (282)
T 2wk1_A          187 LDE---QVRFLPGWFKDT-----------------LPTA-PIDTLAVLRMDGDLYESTWDTLTNLYPKVSVGGYVIVDDY  245 (282)
T ss_dssp             CST---TEEEEESCHHHH-----------------STTC-CCCCEEEEEECCCSHHHHHHHHHHHGGGEEEEEEEEESSC
T ss_pred             CcC---ceEEEEeCHHHH-----------------HhhC-CCCCEEEEEEcCCccccHHHHHHHHHhhcCCCEEEEEcCC
Confidence            3 3   488999998631                 1122 24689999998875 4567889999999999999999877


Q ss_pred             CC-CCHHHHHHHHhhccccceeeecCCEEEEEEEEc
Q 026513          197 LS-EQLPHIINRYSEFLEDILVSEMDDWTCVSGKKK  231 (237)
Q Consensus       197 ~~-~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~  231 (237)
                      .. .....-...+............-+|..++++|.
T Consensus       246 ~~~~G~~~Av~Ef~~~~~i~~~i~~~~~~~v~~rk~  281 (282)
T 2wk1_A          246 MMCPPCKDAVDEYRAKFDIADELITIDRDGVYWQRT  281 (282)
T ss_dssp             TTCHHHHHHHHHHHHHTTCCSCCEECSSSCEEEECC
T ss_pred             CCCHHHHHHHHHHHHhcCCceEEEEecCEEEEEEeC
Confidence            32 222333333333222222233445666666653

>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A

Probab=98.88  E-value=3.6e-09  Score=87.84  Aligned_cols=90  Identities=17%  Similarity=0.203  Sum_probs=64.3

Q ss_pred             ccCCCeEEEEcCcchHHHHHHHHhCCCe--EEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccc
Q 026513           68 IKGGELFLDYGTGSGILGIAAIKFGAAM--SVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVV  145 (237)
Q Consensus        68 ~~~~~~vLDlG~G~G~~~~~la~~~~~~--v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  145 (237)
                      +.++.+|||+|||+|.++. +++.  .+  |+++|+|+.+++.+++++...  .    ++.++++|+.+...++      
T Consensus        19 ~~~~~~VLEIG~G~G~lt~-l~~~--~~~~v~avEid~~~~~~a~~~~~~~--~----~v~~i~~D~~~~~~~~------   83 (252)
T 1qyr_A           19 PQKGQAMVEIGPGLAALTE-PVGE--RLDQLTVIELDRDLAARLQTHPFLG--P----KLTIYQQDAMTFNFGE------   83 (252)
T ss_dssp             CCTTCCEEEECCTTTTTHH-HHHT--TCSCEEEECCCHHHHHHHHTCTTTG--G----GEEEECSCGGGCCHHH------
T ss_pred             CCCcCEEEEECCCCcHHHH-hhhC--CCCeEEEEECCHHHHHHHHHHhccC--C----ceEEEECchhhCCHHH------
Confidence            4578899999999999999 6543  45  999999999999999876532  2    3889999987432210      


Q ss_pred             cccccccccCCCC-CCceeEEEEeCChHHHHHHHHHHh
Q 026513          146 EDLSSHKIRGISQ-TEKYDVVIANILLNPLLQLADHIV  182 (237)
Q Consensus       146 ~~~~~~~~~~~~~-~~~fD~I~~n~~~~~~~~~l~~~~  182 (237)
                                ... ....|.|++|+|+.....++.++.
T Consensus        84 ----------~~~~~~~~~~vvsNlPY~i~~~il~~ll  111 (252)
T 1qyr_A           84 ----------LAEKMGQPLRVFGNLPYNISTPLMFHLF  111 (252)
T ss_dssp             ----------HHHHHTSCEEEEEECCTTTHHHHHHHHH
T ss_pred             ----------hhcccCCceEEEECCCCCccHHHHHHHH
Confidence                      000 024589999999876655544433

>3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus}

Probab=98.81  E-value=3.8e-08  Score=89.97  Aligned_cols=140  Identities=17%  Similarity=0.249  Sum_probs=91.3

Q ss_pred             CCchhHHHHHHHHHhh--ccCCCeEEEEcCcchHHHHHHHHh----C----------CCeEEEEeCCHHHHHHHHHHHHH
Q 026513           52 GEHATTKLCLLLLRRL--IKGGELFLDYGTGSGILGIAAIKF----G----------AAMSVGADIDPQAIKSAHQNAAL  115 (237)
Q Consensus        52 g~~~~~~~~~~~l~~~--~~~~~~vLDlG~G~G~~~~~la~~----~----------~~~v~~vD~s~~~i~~a~~~~~~  115 (237)
                      |.+-|.+.+.+.+-..  ..++.+|+|.+||+|.+.+.+.++    .          ...++|+|+++.+...|+-|+..
T Consensus       197 GqfyTP~~Vv~lmv~l~~p~~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~mNl~l  276 (530)
T 3ufb_A          197 GEFYTPRPVVRFMVEVMDPQLGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQMNLLL  276 (530)
T ss_dssp             CCCCCCHHHHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHHHHHHH
T ss_pred             ceECCcHHHHHHHHHhhccCCCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHHHHHHh
Confidence            4455555555555443  345779999999999998876542    1          23599999999999999999988


Q ss_pred             cCCCCCcceEEeccCccccccccccccccccccccccccCCCCCCceeEEEEeCChHH-------------------HHH
Q 026513          116 NNIGPKKMKLHLVPDRTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLNP-------------------LLQ  176 (237)
Q Consensus       116 ~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~~~-------------------~~~  176 (237)
                      .++..    ..+..+|.......                ......+||+|++|||+..                   ...
T Consensus       277 hg~~~----~~I~~~dtL~~~~~----------------~~~~~~~fD~Il~NPPf~~~~~~~~~~~~~~~~~~~~~~~~  336 (530)
T 3ufb_A          277 HGLEY----PRIDPENSLRFPLR----------------EMGDKDRVDVILTNPPFGGEEEKGILGNFPEDMQTAETAML  336 (530)
T ss_dssp             HTCSC----CEEECSCTTCSCGG----------------GCCGGGCBSEEEECCCSSCBCCHHHHTTSCGGGCCCBHHHH
T ss_pred             cCCcc----ccccccccccCchh----------------hhcccccceEEEecCCCCccccccccccCchhcccchhHHH
Confidence            88764    34556775432111                1122357999999999621                   123


Q ss_pred             HHHHHhHhcC-------CCeEEEEe---ccC-CCC-HHHHHHHHhhc
Q 026513          177 LADHIVSYAK-------PGAVVGIS---GIL-SEQ-LPHIINRYSEF  211 (237)
Q Consensus       177 ~l~~~~~~L~-------~gG~liis---~~~-~~~-~~~~~~~~~~~  211 (237)
                      ++..+...|+       +||++.+.   +++ ... ...+.+.+.+.
T Consensus       337 Fl~~~l~~Lk~~~~~l~~gGr~avVlP~g~Lf~~~~~~~iRk~Lle~  383 (530)
T 3ufb_A          337 FLQLIMRKLKRPGHGSDNGGRAAVVVPNGTLFSDGISARIKEELLKN  383 (530)
T ss_dssp             HHHHHHHHBCCTTSSSSSCCEEEEEEEHHHHHCCTHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhhhhhccCCCceEEEEecchhhhccchHHHHHHHHhhc
Confidence            5677777776       79988773   333 332 23455555543

>3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A

Probab=98.77  E-value=1.4e-08  Score=94.45  Aligned_cols=104  Identities=13%  Similarity=0.152  Sum_probs=72.7

Q ss_pred             CCeEEEEcCcchHHHHHH---HH-hC----------CCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccc
Q 026513           71 GELFLDYGTGSGILGIAA---IK-FG----------AAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTAS  136 (237)
Q Consensus        71 ~~~vLDlG~G~G~~~~~l---a~-~~----------~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~  136 (237)
                      +..|||+|||+|.++..+   ++ .+          ..+|+|+|.++.++..++.... |+..+   ++.++.+|+.+..
T Consensus       410 ~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~A~~~l~~~~~-Ng~~d---~VtVI~gd~eev~  485 (745)
T 3ua3_A          410 TVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNAIVTLKYMNV-RTWKR---RVTIIESDMRSLP  485 (745)
T ss_dssp             EEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHHHHHHHHHHHH-HTTTT---CSEEEESCGGGHH
T ss_pred             CcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChHHHHHHHHHHh-cCCCC---eEEEEeCchhhcc
Confidence            458999999999997543   22 12          2389999999988866555544 78776   5889999987432


Q ss_pred             ccccccccccccccccccCCCCCCceeEEEEeCCh-----HHHHHHHHHHhHhcCCCeEEEE
Q 026513          137 MNERVDGVVEDLSSHKIRGISQTEKYDVVIANILL-----NPLLQLADHIVSYAKPGAVVGI  193 (237)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~-----~~~~~~l~~~~~~L~~gG~lii  193 (237)
                      ++.               .....++.|+||+-..-     +.+.+++..+.+.|+|||.++=
T Consensus       486 lp~---------------~~~~~ekVDIIVSElmGsfl~nEL~pe~Ld~v~r~Lkp~Gi~iP  532 (745)
T 3ua3_A          486 GIA---------------KDRGFEQPDIIVSELLGSFGDNELSPECLDGVTGFLKPTTISIP  532 (745)
T ss_dssp             HHH---------------HHTTCCCCSEEEECCCBTTBGGGSHHHHHHTTGGGSCTTCEEES
T ss_pred             ccc---------------ccCCCCcccEEEEeccccccchhccHHHHHHHHHhCCCCcEEEC
Confidence            110               00014689999996652     3445677888899999998763

>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A

Probab=98.76  E-value=6.6e-09  Score=86.46  Aligned_cols=85  Identities=19%  Similarity=0.165  Sum_probs=61.1

Q ss_pred             cCC--CeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcC--C-CCC-c-ceEEeccCccccccccccc
Q 026513           69 KGG--ELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNN--I-GPK-K-MKLHLVPDRTFTASMNERV  141 (237)
Q Consensus        69 ~~~--~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~--~-~~~-~-~~v~~~~~d~~~~~~~~~~  141 (237)
                      .++  .+|||+|||+|..++.++..|. +|+++|+++.+++.+++++....  . .+. . -+++++++|..+.      
T Consensus        85 ~~g~~~~VLDl~~G~G~dal~lA~~g~-~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~~D~~~~------  157 (258)
T 2oyr_A           85 KGDYLPDVVDATAGLGRDAFVLASVGC-RVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTA------  157 (258)
T ss_dssp             BTTBCCCEEETTCTTCHHHHHHHHHTC-CEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHH------
T ss_pred             cCCCCCEEEEcCCcCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEECCHHHH------
Confidence            456  8999999999999999998865 69999999998777777654221  0 000 0 1488899997631      


Q ss_pred             cccccccccccccCCCCCCceeEEEEeCChHH
Q 026513          142 DGVVEDLSSHKIRGISQTEKYDVVIANILLNP  173 (237)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~~~  173 (237)
                                 +...  ..+||+|++||++..
T Consensus       158 -----------L~~~--~~~fDvV~lDP~y~~  176 (258)
T 2oyr_A          158 -----------LTDI--TPRPQVVYLDPMFPH  176 (258)
T ss_dssp             -----------STTC--SSCCSEEEECCCCCC
T ss_pred             -----------HHhC--cccCCEEEEcCCCCC
Confidence                       1111  237999999998743

>3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A*

Probab=98.74  E-value=6.8e-08  Score=80.30  Aligned_cols=123  Identities=12%  Similarity=0.111  Sum_probs=81.8

Q ss_pred             hccCCCeEEEEcCcchHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHHcCCCCC--cceEEeccCccccccccccccc
Q 026513           67 LIKGGELFLDYGTGSGILGIAAIKF-GAAMSVGADIDPQAIKSAHQNAALNNIGPK--KMKLHLVPDRTFTASMNERVDG  143 (237)
Q Consensus        67 ~~~~~~~vLDlG~G~G~~~~~la~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~--~~~v~~~~~d~~~~~~~~~~~~  143 (237)
                      .++++.+|||||||+|.++..++.. +...+.|+|+.-....        ..+...  ...+.+...+..          
T Consensus        71 ~l~~~~~VLDLGaAPGGWSQvAa~~~~~~~v~g~dVGvDl~~--------~pi~~~~~g~~ii~~~~~~d----------  132 (277)
T 3evf_A           71 YVKLEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGRDGHE--------KPMNVQSLGWNIITFKDKTD----------  132 (277)
T ss_dssp             SSCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTCC--------CCCCCCBTTGGGEEEECSCC----------
T ss_pred             CCCCCCEEEEecCCCCHHHHHHHHhcCCCcceeEEEeccCcc--------cccccCcCCCCeEEEeccce----------
Confidence            4678889999999999999988865 6778889998743210        011100  001112222211          


Q ss_pred             cccccccccccCCCCCCceeEEEEeCChH----HH---H--HHHHHHhHhcCCC-eEEEEeccC--CCCHHHHHHHHhhc
Q 026513          144 VVEDLSSHKIRGISQTEKYDVVIANILLN----PL---L--QLADHIVSYAKPG-AVVGISGIL--SEQLPHIINRYSEF  211 (237)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~fD~I~~n~~~~----~~---~--~~l~~~~~~L~~g-G~liis~~~--~~~~~~~~~~~~~~  211 (237)
                               ... ..+.+||+|+|+...+    ..   .  .+++.+.++|+|| |.+++.-|.  ..+..++...++..
T Consensus       133 ---------v~~-l~~~~~DlVlsD~apnsG~~~~D~~rs~~LL~~a~~~LkpG~G~FV~KVf~pyg~~~~~l~~~lk~~  202 (277)
T 3evf_A          133 ---------IHR-LEPVKCDTLLCDIGESSSSSVTEGERTVRVLDTVEKWLACGVDNFCVKVLAPYMPDVLEKLELLQRR  202 (277)
T ss_dssp             ---------TTT-SCCCCCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEESCTTSHHHHHHHHHHHHH
T ss_pred             ---------ehh-cCCCCccEEEecCccCcCchHHHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCCccHHHHHHHHHHh
Confidence                     111 2356899999988432    22   2  3467788999999 999998887  78888999998887


Q ss_pred             ccccee
Q 026513          212 LEDILV  217 (237)
Q Consensus       212 ~~~~~~  217 (237)
                      |..+.+
T Consensus       203 F~~V~~  208 (277)
T 3evf_A          203 FGGTVI  208 (277)
T ss_dssp             HCCEEE
T ss_pred             cCCEEE
Confidence            765544

>2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}

Probab=98.62  E-value=1.3e-07  Score=71.23  Aligned_cols=103  Identities=17%  Similarity=0.049  Sum_probs=72.4

Q ss_pred             HHHHHHHHHhhccCCCeEEEEcCcch-HHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccc
Q 026513           57 TKLCLLLLRRLIKGGELFLDYGTGSG-ILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTA  135 (237)
Q Consensus        57 ~~~~~~~l~~~~~~~~~vLDlG~G~G-~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~  135 (237)
                      ...+.+++.+...++.+|||+|||+| ..+..|+......|+++|+++.+++                   ++..|++++
T Consensus        22 ~e~LaeYI~~~~~~~~rVlEVG~G~g~~vA~~La~~~g~~V~atDInp~Av~-------------------~v~dDiF~P   82 (153)
T 2k4m_A           22 WNDLAVYIIRCSGPGTRVVEVGAGRFLYVSDYIRKHSKVDLVLTDIKPSHGG-------------------IVRDDITSP   82 (153)
T ss_dssp             HHHHHHHHHHHSCSSSEEEEETCTTCCHHHHHHHHHSCCEEEEECSSCSSTT-------------------EECCCSSSC
T ss_pred             HHHHHHHHHhcCCCCCcEEEEccCCChHHHHHHHHhCCCeEEEEECCccccc-------------------eEEccCCCC
Confidence            34445555555566679999999999 5999999732455999999998765                   667887753


Q ss_pred             cccccccccccccccccccCCCCCCceeEE-EEeCChHHHHHHHHHHhHhcCCCeEEEEeccCCCC
Q 026513          136 SMNERVDGVVEDLSSHKIRGISQTEKYDVV-IANILLNPLLQLADHIVSYAKPGAVVGISGILSEQ  200 (237)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I-~~n~~~~~~~~~l~~~~~~L~~gG~liis~~~~~~  200 (237)
                      ...                   .-+.||+| -.|||.+....+++...   +-|.-++|..+..+.
T Consensus        83 ~~~-------------------~Y~~~DLIYsirPP~El~~~i~~lA~---~v~adliI~pL~~E~  126 (153)
T 2k4m_A           83 RME-------------------IYRGAALIYSIRPPAEIHSSLMRVAD---AVGARLIIKPLTGED  126 (153)
T ss_dssp             CHH-------------------HHTTEEEEEEESCCTTTHHHHHHHHH---HHTCEEEEECBTTBC
T ss_pred             ccc-------------------ccCCcCEEEEcCCCHHHHHHHHHHHH---HcCCCEEEEcCCCCc
Confidence            211                   01489999 55999888777766555   447788887665543

>3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus}

Probab=98.59  E-value=6.2e-08  Score=80.67  Aligned_cols=124  Identities=12%  Similarity=0.126  Sum_probs=82.7

Q ss_pred             hccCCCeEEEEcCcchHHHHHHHH-hCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccC-cccccccccccccc
Q 026513           67 LIKGGELFLDYGTGSGILGIAAIK-FGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPD-RTFTASMNERVDGV  144 (237)
Q Consensus        67 ~~~~~~~vLDlG~G~G~~~~~la~-~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~-d~~~~~~~~~~~~~  144 (237)
                      .+.++.+|||||||+|.++.+++. .+...|+|+|+...+...+...   ... ...+ +.+... |..           
T Consensus        87 ~Lk~~~~VLDLGaAPGGWsQvAa~~~gv~sV~GvdvG~d~~~~pi~~---~~~-g~~i-i~~~~~~dv~-----------  150 (282)
T 3gcz_A           87 YVKPTGIVVDLGCGRGGWSYYAASLKNVKKVMAFTLGVQGHEKPIMR---TTL-GWNL-IRFKDKTDVF-----------  150 (282)
T ss_dssp             SCCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCCC---CBT-TGGG-EEEECSCCGG-----------
T ss_pred             CCCCCCEEEEeCCCCCHHHHHHHHhcCCCeeeeEEeccCcccccccc---ccC-CCce-EEeeCCcchh-----------
Confidence            467888999999999999999885 5777899999987531111000   000 0000 111111 211           


Q ss_pred             ccccccccccCCCCCCceeEEEEeCCh-------HHHH--HHHHHHhHhcCCC--eEEEEeccC--CCCHHHHHHHHhhc
Q 026513          145 VEDLSSHKIRGISQTEKYDVVIANILL-------NPLL--QLADHIVSYAKPG--AVVGISGIL--SEQLPHIINRYSEF  211 (237)
Q Consensus       145 ~~~~~~~~~~~~~~~~~fD~I~~n~~~-------~~~~--~~l~~~~~~L~~g--G~liis~~~--~~~~~~~~~~~~~~  211 (237)
                                .+ +..++|+|+|+...       ++..  .+++.+..+|+||  |.+++.-|.  ..+..++...++..
T Consensus       151 ----------~l-~~~~~DvVLSDmApnsG~~~~D~~rs~~LL~~A~~~Lk~g~~G~Fv~KvF~pyg~~~~~l~~~lk~~  219 (282)
T 3gcz_A          151 ----------NM-EVIPGDTLLCDIGESSPSIAVEEQRTLRVLNCAKQWLQEGNYTEFCIKVLCPYTPLIMEELSRLQLK  219 (282)
T ss_dssp             ----------GS-CCCCCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEESCCCSHHHHHHHHHHHHH
T ss_pred             ----------hc-CCCCcCEEEecCccCCCChHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEecCCCccHHHHHHHHHHh
Confidence                      12 35789999998763       2222  3577778999999  999999887  78888999998887


Q ss_pred             ccccee
Q 026513          212 LEDILV  217 (237)
Q Consensus       212 ~~~~~~  217 (237)
                      |..+.+
T Consensus       220 F~~V~~  225 (282)
T 3gcz_A          220 HGGGLV  225 (282)
T ss_dssp             HCCEEE
T ss_pred             cCCEEE
Confidence            765544

>2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli}

Probab=98.57  E-value=3e-07  Score=76.42  Aligned_cols=142  Identities=12%  Similarity=0.036  Sum_probs=85.5

Q ss_pred             CCCeEEEEcCcchHHHHHHHH--------hC-----CCeEEEEeCCH---HHHH-----------HHHHHHHHc------
Q 026513           70 GGELFLDYGTGSGILGIAAIK--------FG-----AAMSVGADIDP---QAIK-----------SAHQNAALN------  116 (237)
Q Consensus        70 ~~~~vLDlG~G~G~~~~~la~--------~~-----~~~v~~vD~s~---~~i~-----------~a~~~~~~~------  116 (237)
                      ++.+|||+|+|+|..++.+++        .+     ..+++++|..|   ..++           .|++.+..-      
T Consensus        60 ~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~~g  139 (257)
T 2qy6_A           60 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPG  139 (257)
T ss_dssp             SEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSCSE
T ss_pred             CCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhccccccc
Confidence            446899999999988776543        22     14799999887   3333           556655531      


Q ss_pred             ----CCCCCcceEEeccCccccccccccccccccccccccccCCCC--CCceeEEEEeCCh---H---HHHHHHHHHhHh
Q 026513          117 ----NIGPKKMKLHLVPDRTFTASMNERVDGVVEDLSSHKIRGISQ--TEKYDVVIANILL---N---PLLQLADHIVSY  184 (237)
Q Consensus       117 ----~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~fD~I~~n~~~---~---~~~~~l~~~~~~  184 (237)
                          .+......+.++.+|+.+..                 .....  ..+||+|+.++..   +   +..++++.+.++
T Consensus       140 ~~r~~~~~~~~~l~l~~GDa~~~l-----------------~~~~~~~~~~~D~iflD~fsp~~~p~lw~~~~l~~l~~~  202 (257)
T 2qy6_A          140 CHRLLLDEGRVTLDLWFGDINELI-----------------SQLDDSLNQKVDAWFLDGFAPAKNPDMWTQNLFNAMARL  202 (257)
T ss_dssp             EEEEEEC--CEEEEEEESCHHHHG-----------------GGSCGGGTTCEEEEEECSSCTTTCGGGCCHHHHHHHHHH
T ss_pred             hhheeccCCceEEEEEECcHHHHH-----------------hhcccccCCeEEEEEECCCCcccChhhcCHHHHHHHHHH
Confidence                12223345788889876311                 11110  1379999998631   1   245789999999


Q ss_pred             cCCCeEEEEeccCCCCHHHHHHHHh-hccccceeee-cCCEEEEEEEEcc
Q 026513          185 AKPGAVVGISGILSEQLPHIINRYS-EFLEDILVSE-MDDWTCVSGKKKR  232 (237)
Q Consensus       185 L~~gG~liis~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~w~~~~~~~~~  232 (237)
                      |+|||.|+.-+   . ...+...+. .+|...+... ...+..+.+.+..
T Consensus       203 L~pGG~l~tys---a-a~~vrr~L~~aGF~v~~~~g~~~kr~m~~a~~~~  248 (257)
T 2qy6_A          203 ARPGGTLATFT---S-AGFVRRGLQEAGFTMQKRKGFGRKREMLCGVMEQ  248 (257)
T ss_dssp             EEEEEEEEESC---C-BHHHHHHHHHHTEEEEEECCSTTCCCEEEEEEC-
T ss_pred             cCCCcEEEEEe---C-CHHHHHHHHHCCCEEEeCCCCCCCCceEEEEecC
Confidence            99999998621   1 123444443 3466554433 3346666666543

>3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A*

Probab=98.45  E-value=1.6e-06  Score=72.69  Aligned_cols=121  Identities=12%  Similarity=0.130  Sum_probs=82.4

Q ss_pred             hhccCCCeEEEEcCcchHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHHcCCC----CCcceEEeccC-ccccccccc
Q 026513           66 RLIKGGELFLDYGTGSGILGIAAIKF-GAAMSVGADIDPQAIKSAHQNAALNNIG----PKKMKLHLVPD-RTFTASMNE  139 (237)
Q Consensus        66 ~~~~~~~~vLDlG~G~G~~~~~la~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~~----~~~~~v~~~~~-d~~~~~~~~  139 (237)
                      ..+.++.+|||+||++|.++..+++. +...|+|+|+...+..        .+..    ...+ +.+..+ |+.      
T Consensus        77 ~l~~~g~~vlDLGaaPGgWsqva~~~~gv~sV~Gvdlg~~~~~--------~P~~~~~~~~~i-v~~~~~~di~------  141 (300)
T 3eld_A           77 GYLRITGRVLDLGCGRGGWSYYAAAQKEVMSVKGYTLGIEGHE--------KPIHMQTLGWNI-VKFKDKSNVF------  141 (300)
T ss_dssp             TSCCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSC--------CCCCCCBTTGGG-EEEECSCCTT------
T ss_pred             CCCCCCCEEEEcCCCCCHHHHHHHHhcCCceeeeEEecccccc--------ccccccccCCce-EEeecCceee------
Confidence            45678999999999999999999964 7778999999753210        0100    0000 111111 111      


Q ss_pred             cccccccccccccccCCCCCCceeEEEEeCChH-------HH--HHHHHHHhHhcCCC-eEEEEeccC--CCCHHHHHHH
Q 026513          140 RVDGVVEDLSSHKIRGISQTEKYDVVIANILLN-------PL--LQLADHIVSYAKPG-AVVGISGIL--SEQLPHIINR  207 (237)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~~-------~~--~~~l~~~~~~L~~g-G~liis~~~--~~~~~~~~~~  207 (237)
                                     .+ ...++|+|+|+...+       +.  ..++..+..+|+|| |.+++.-|.  .....++...
T Consensus       142 ---------------~l-~~~~~DlVlsD~APnsG~~~~D~~rs~~LL~~A~~~LkpG~G~FV~KvF~~yG~~~~~ll~~  205 (300)
T 3eld_A          142 ---------------TM-PTEPSDTLLCDIGESSSNPLVERDRTMKVLENFERWKHVNTENFCVKVLAPYHPDVIEKLER  205 (300)
T ss_dssp             ---------------TS-CCCCCSEEEECCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCCEEEEEESSTTSHHHHHHHHH
T ss_pred             ---------------ec-CCCCcCEEeecCcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCcEEEEeccccCccHHHHHHH
Confidence                           12 256899999977532       22  24577778999999 999999887  8888899999


Q ss_pred             Hhhcccccee
Q 026513          208 YSEFLEDILV  217 (237)
Q Consensus       208 ~~~~~~~~~~  217 (237)
                      +...|..+.+
T Consensus       206 lk~~F~~V~~  215 (300)
T 3eld_A          206 LQLRFGGGIV  215 (300)
T ss_dssp             HHHHHCCEEE
T ss_pred             HHHhCCcEEE
Confidence            8888765544

>2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A*

Probab=98.44  E-value=4.5e-07  Score=74.50  Aligned_cols=119  Identities=10%  Similarity=0.073  Sum_probs=72.3

Q ss_pred             hccCCCeEEEEcCcchHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHHcCCC---CCcceEEeccC-ccccccccccc
Q 026513           67 LIKGGELFLDYGTGSGILGIAAIKF-GAAMSVGADIDPQAIKSAHQNAALNNIG---PKKMKLHLVPD-RTFTASMNERV  141 (237)
Q Consensus        67 ~~~~~~~vLDlG~G~G~~~~~la~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~~---~~~~~v~~~~~-d~~~~~~~~~~  141 (237)
                      ++++|.+|+|+||++|..+.++++. +...|.|.++....        ...+..   ...--+.+.++ |+++       
T Consensus        70 likpg~~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig~D~--------~~~P~~~~~~Gv~~i~~~~G~Df~~-------  134 (269)
T 2px2_A           70 FVQPIGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGPG--------HEEPMLMQSYGWNIVTMKSGVDVFY-------  134 (269)
T ss_dssp             SCCCCEEEEEETCTTSHHHHHHTTSTTEEEEEEECCCSTT--------SCCCCCCCSTTGGGEEEECSCCGGG-------
T ss_pred             CCCCCCEEEEcCCCCCHHHHHHhhhcCCCCceeEEEcccc--------ccCCCcccCCCceEEEeeccCCccC-------
Confidence            5789999999999999999999875 23333343333220        001111   11001345556 8763       


Q ss_pred             cccccccccccccCCCCCCceeEEEEeCC-------hHHHH--HHHHHHhHhcCCCe-EEEEeccCC--CCHHHHHHHHh
Q 026513          142 DGVVEDLSSHKIRGISQTEKYDVVIANIL-------LNPLL--QLADHIVSYAKPGA-VVGISGILS--EQLPHIINRYS  209 (237)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~fD~I~~n~~-------~~~~~--~~l~~~~~~L~~gG-~liis~~~~--~~~~~~~~~~~  209 (237)
                                    + ...++|+|+|++.       .++.+  ..++-+..+|+||| .+++--|..  +...++++.++
T Consensus       135 --------------~-~~~~~DvVLSDMAPnSG~~~vD~~Rs~~aL~~A~~~Lk~gG~~FvvKVFqg~~~~~~~~l~~lk  199 (269)
T 2px2_A          135 --------------K-PSEISDTLLCDIGESSPSAEIEEQRTLRILEMVSDWLSRGPKEFCIKILCPYMPKVIEKLESLQ  199 (269)
T ss_dssp             --------------S-CCCCCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEESCTTSHHHHHHHHHHH
T ss_pred             --------------C-CCCCCCEEEeCCCCCCCccHHHHHHHHHHHHHHHHHhhcCCcEEEEEECCCCchHHHHHHHHHH
Confidence                          1 1458999999874       12222  24666778999999 999977764  33344455666


Q ss_pred             hccccc
Q 026513          210 EFLEDI  215 (237)
Q Consensus       210 ~~~~~~  215 (237)
                      ..|..+
T Consensus       200 ~~F~~v  205 (269)
T 2px2_A          200 RRFGGG  205 (269)
T ss_dssp             HHHCCE
T ss_pred             HHcCCE
Confidence            655444

>2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59

Probab=98.36  E-value=2.2e-07  Score=77.78  Aligned_cols=127  Identities=9%  Similarity=0.090  Sum_probs=86.1

Q ss_pred             HHHHHHHHhhccCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccc
Q 026513           58 KLCLLLLRRLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASM  137 (237)
Q Consensus        58 ~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~  137 (237)
                      ......+.. +. +..+||+.+|||.+++.+.+ +..+++.+|.++..++..++|+...  .    ++.++..|.+....
T Consensus        81 ~~yf~~l~~-~n-~~~~LDlfaGSGaLgiEaLS-~~d~~vfvE~~~~a~~~L~~Nl~~~--~----~~~V~~~D~~~~L~  151 (283)
T 2oo3_A           81 LEYISVIKQ-IN-LNSTLSYYPGSPYFAINQLR-SQDRLYLCELHPTEYNFLLKLPHFN--K----KVYVNHTDGVSKLN  151 (283)
T ss_dssp             HHHHHHHHH-HS-SSSSCCEEECHHHHHHHHSC-TTSEEEEECCSHHHHHHHTTSCCTT--S----CEEEECSCHHHHHH
T ss_pred             HHHHHHHHH-hc-CCCceeEeCCcHHHHHHHcC-CCCeEEEEeCCHHHHHHHHHHhCcC--C----cEEEEeCcHHHHHH
Confidence            344444444 23 45799999999999999887 4588999999999999999888642  1    48888999763210


Q ss_pred             cccccccccccccccccCCCCCCceeEEEEeCChH---HHHHHHHHHhH--hcCCCeEEEEe-ccC-CCCHHHHHHHHh
Q 026513          138 NERVDGVVEDLSSHKIRGISQTEKYDVVIANILLN---PLLQLADHIVS--YAKPGAVVGIS-GIL-SEQLPHIINRYS  209 (237)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~~---~~~~~l~~~~~--~L~~gG~liis-~~~-~~~~~~~~~~~~  209 (237)
                                      ....+..+||+|+++||+.   .+.++++.+..  .+.++|.+++- .+. ......+.+.+.
T Consensus       152 ----------------~l~~~~~~fdLVfiDPPYe~k~~~~~vl~~L~~~~~r~~~Gi~v~WYPi~~~~~~~~~~~~l~  214 (283)
T 2oo3_A          152 ----------------ALLPPPEKRGLIFIDPSYERKEEYKEIPYAIKNAYSKFSTGLYCVWYPVVNKAWTEQFLRKMR  214 (283)
T ss_dssp             ----------------HHCSCTTSCEEEEECCCCCSTTHHHHHHHHHHHHHHHCTTSEEEEEEEESSHHHHHHHHHHHH
T ss_pred             ----------------HhcCCCCCccEEEECCCCCCCcHHHHHHHHHHHhCccCCCeEEEEEEeccchHHHHHHHHHHH
Confidence                            0112245799999999986   34555555544  56799999885 332 233344444443

>4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A*

Probab=98.34  E-value=5.5e-06  Score=71.86  Aligned_cols=99  Identities=12%  Similarity=0.118  Sum_probs=67.2

Q ss_pred             hccCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccc
Q 026513           67 LIKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVE  146 (237)
Q Consensus        67 ~~~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  146 (237)
                      .+.+|.++||+||++|+++..+++.| .+|+|||..+-. .    .+...  .    .+.++++|.+..           
T Consensus       208 ~l~~G~~vlDLGAaPGGWT~~l~~rg-~~V~aVD~~~l~-~----~l~~~--~----~V~~~~~d~~~~-----------  264 (375)
T 4auk_A          208 RLANGMWAVDLGACPGGWTYQLVKRN-MWVYSVDNGPMA-Q----SLMDT--G----QVTWLREDGFKF-----------  264 (375)
T ss_dssp             HSCTTCEEEEETCTTCHHHHHHHHTT-CEEEEECSSCCC-H----HHHTT--T----CEEEECSCTTTC-----------
T ss_pred             cCCCCCEEEEeCcCCCHHHHHHHHCC-CEEEEEEhhhcC-h----hhccC--C----CeEEEeCccccc-----------
Confidence            36789999999999999999999886 579999987521 1    12211  2    388899998731           


Q ss_pred             ccccccccCCCCCCceeEEEEeCChHHH--HHHHHHHhHhcCCCeEEEEeccC
Q 026513          147 DLSSHKIRGISQTEKYDVVIANILLNPL--LQLADHIVSYAKPGAVVGISGIL  197 (237)
Q Consensus       147 ~~~~~~~~~~~~~~~fD~I~~n~~~~~~--~~~l~~~~~~L~~gG~liis~~~  197 (237)
                               .....++|+|+|++.....  ..++..+......++.++..-+.
T Consensus       265 ---------~~~~~~~D~vvsDm~~~p~~~~~l~~~wl~~~~~~~aI~~lKL~  308 (375)
T 4auk_A          265 ---------RPTRSNISWMVCDMVEKPAKVAALMAQWLVNGWCRETIFNLKLP  308 (375)
T ss_dssp             ---------CCCSSCEEEEEECCSSCHHHHHHHHHHHHHTTSCSEEEEEEECC
T ss_pred             ---------cCCCCCcCEEEEcCCCChHHhHHHHHHHHhccccceEEEEEEec
Confidence                     1224689999999976543  23444555555555665554443

>3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus}

Probab=98.22  E-value=9.8e-06  Score=67.76  Aligned_cols=119  Identities=8%  Similarity=0.060  Sum_probs=73.4

Q ss_pred             hccCCCeEEEEcCcchHHHHHHHH-hCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccC-cccccccccccccc
Q 026513           67 LIKGGELFLDYGTGSGILGIAAIK-FGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPD-RTFTASMNERVDGV  144 (237)
Q Consensus        67 ~~~~~~~vLDlG~G~G~~~~~la~-~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~-d~~~~~~~~~~~~~  144 (237)
                      .+.++.+|||+||++|.++.+++. .+..+|+|+|+-..--+.=+ .....+..    -+.+..+ |++           
T Consensus        91 ~l~~~~~VlDLGaapGGwsq~~~~~~gv~~V~avdvG~~~he~P~-~~~ql~w~----lV~~~~~~Dv~-----------  154 (321)
T 3lkz_A           91 FLEPVGKVIDLGCGRGGWCYYMATQKRVQEVRGYTKGGPGHEEPQ-LVQSYGWN----IVTMKSGVDVF-----------  154 (321)
T ss_dssp             SCCCCEEEEEETCTTCHHHHHHTTCTTEEEEEEECCCSTTSCCCC-CCCBTTGG----GEEEECSCCTT-----------
T ss_pred             CCCCCCEEEEeCCCCCcHHHHHHhhcCCCEEEEEEcCCCCccCcc-hhhhcCCc----ceEEEeccCHh-----------
Confidence            467888999999999999998775 57788999999774210000 00000001    1555555 543           


Q ss_pred             ccccccccccCCCCCCceeEEEEeCCh-------HHH--HHHHHHHhHhcCCC-eEEEEeccCC--CCHHHHHHHHhhcc
Q 026513          145 VEDLSSHKIRGISQTEKYDVVIANILL-------NPL--LQLADHIVSYAKPG-AVVGISGILS--EQLPHIINRYSEFL  212 (237)
Q Consensus       145 ~~~~~~~~~~~~~~~~~fD~I~~n~~~-------~~~--~~~l~~~~~~L~~g-G~liis~~~~--~~~~~~~~~~~~~~  212 (237)
                                .+. ..++|+|+|+..-       +..  ..+++.+..+|++| |.+++--+..  ++..+.+..+...|
T Consensus       155 ----------~l~-~~~~D~ivcDigeSs~~~~ve~~Rtl~vLel~~~wL~~~~~~f~~KVl~pY~~~v~e~l~~lq~~f  223 (321)
T 3lkz_A          155 ----------YRP-SECCDTLLCDIGESSSSAEVEEHRTIRVLEMVEDWLHRGPREFCVKVLCPYMPKVIEKMELLQRRY  223 (321)
T ss_dssp             ----------SSC-CCCCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHTTCCCEEEEEESCTTSHHHHHHHHHHHHHH
T ss_pred             ----------hCC-CCCCCEEEEECccCCCChhhhhhHHHHHHHHHHHHhccCCCcEEEEEcCCCChHHHHHHHHHHHHh
Confidence                      232 2679999997751       221  23677788999999 8888854433  34444555554433

>3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A*

Probab=98.21  E-value=2.8e-05  Score=63.12  Aligned_cols=118  Identities=12%  Similarity=0.096  Sum_probs=75.7

Q ss_pred             hccCCCeEEEEcCcchHHHHHHHH-hCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccC-cccccccccccccc
Q 026513           67 LIKGGELFLDYGTGSGILGIAAIK-FGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPD-RTFTASMNERVDGV  144 (237)
Q Consensus        67 ~~~~~~~vLDlG~G~G~~~~~la~-~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~-d~~~~~~~~~~~~~  144 (237)
                      .+.++.+|+|+||++|.++.+++. .+..+|+|+|+-+.--+.=+ .....|..    -+.|..+ |++           
T Consensus        75 ~l~~g~~VvDLGaapGGWSq~~a~~~g~~~V~avdvG~~ghe~P~-~~~s~gwn----~v~fk~gvDv~-----------  138 (267)
T 3p8z_A           75 MVIPEGRVIDLGCGRGGWSYYCAGLKKVTEVRGYTKGGPGHEEPV-PMSTYGWN----IVKLMSGKDVF-----------  138 (267)
T ss_dssp             SSCCCEEEEEESCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCCC-CCCCTTTT----SEEEECSCCGG-----------
T ss_pred             CCCCCCEEEEcCCCCCcHHHHHHHhcCCCEEEEEecCCCCccCcc-hhhhcCcC----ceEEEecccee-----------
Confidence            467888999999999999998875 57788999999764321000 00111222    3788888 764           


Q ss_pred             ccccccccccCCCCCCceeEEEEeCCh-------HHH--HHHHHHHhHhcCCCeEEEEeccCCCC--HHHHHHHHhhcc
Q 026513          145 VEDLSSHKIRGISQTEKYDVVIANILL-------NPL--LQLADHIVSYAKPGAVVGISGILSEQ--LPHIINRYSEFL  212 (237)
Q Consensus       145 ~~~~~~~~~~~~~~~~~fD~I~~n~~~-------~~~--~~~l~~~~~~L~~gG~liis~~~~~~--~~~~~~~~~~~~  212 (237)
                                ... ..++|.|+|+..-       +..  .++++.+..+|++ |.+++--+....  ..+.++.+...|
T Consensus       139 ----------~~~-~~~~DtllcDIgeSs~~~~vE~~RtlrvLela~~wL~~-~~fc~KVl~py~p~v~e~l~~lq~~f  205 (267)
T 3p8z_A          139 ----------YLP-PEKCDTLLCDIGESSPSPTVEESRTIRVLKMVEPWLKN-NQFCIKVLNPYMPTVIEHLERLQRKH  205 (267)
T ss_dssp             ----------GCC-CCCCSEEEECCCCCCSCHHHHHHHHHHHHHHHGGGCSS-CEEEEEESCCCSHHHHHHHHHHHHHH
T ss_pred             ----------ecC-CccccEEEEecCCCCCChhhhhhHHHHHHHHHHHhccc-CCEEEEEccCCChhHHHHHHHHHHHh
Confidence                      222 3679999998741       222  2367888899998 788875443333  334454444333

>1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23

Probab=98.19  E-value=2.1e-06  Score=71.76  Aligned_cols=83  Identities=18%  Similarity=0.289  Sum_probs=62.4

Q ss_pred             ccCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccc
Q 026513           68 IKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVED  147 (237)
Q Consensus        68 ~~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  147 (237)
                      ++++..++|.+||.|..+..+++. ..+|+|+|.++.+++.|++ +..   .    ++.++++|+.+..      ..++.
T Consensus        20 ~~~gg~~VD~T~G~GGHS~~il~~-~g~VigiD~Dp~Ai~~A~~-L~~---~----rv~lv~~~f~~l~------~~L~~   84 (285)
T 1wg8_A           20 VRPGGVYVDATLGGAGHARGILER-GGRVIGLDQDPEAVARAKG-LHL---P----GLTVVQGNFRHLK------RHLAA   84 (285)
T ss_dssp             CCTTCEEEETTCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHH-TCC---T----TEEEEESCGGGHH------HHHHH
T ss_pred             CCCCCEEEEeCCCCcHHHHHHHHC-CCEEEEEeCCHHHHHHHHh-hcc---C----CEEEEECCcchHH------HHHHH
Confidence            467889999999999999999987 5689999999999999998 543   2    4888999886311      11111


Q ss_pred             cccccccCCCCCCceeEEEEeCChHHH
Q 026513          148 LSSHKIRGISQTEKYDVVIANILLNPL  174 (237)
Q Consensus       148 ~~~~~~~~~~~~~~fD~I~~n~~~~~~  174 (237)
                              . ...++|.|++|.....+
T Consensus        85 --------~-g~~~vDgIL~DLGvSS~  102 (285)
T 1wg8_A           85 --------L-GVERVDGILADLGVSSF  102 (285)
T ss_dssp             --------T-TCSCEEEEEEECSCCHH
T ss_pred             --------c-CCCCcCEEEeCCccccc
Confidence                    1 12579999998875443

>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A

Probab=98.17  E-value=5e-06  Score=70.28  Aligned_cols=58  Identities=28%  Similarity=0.368  Sum_probs=48.0

Q ss_pred             HHHHHHHHhhccCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHc
Q 026513           58 KLCLLLLRRLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALN  116 (237)
Q Consensus        58 ~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~  116 (237)
                      .++...+.....+|..|||++||+|++++.+++.| .+++|+|+++.+++.|++++...
T Consensus       223 ~l~~~~i~~~~~~~~~vlD~f~GsGt~~~~a~~~g-~~~~g~e~~~~~~~~a~~r~~~~  280 (297)
T 2zig_A          223 ELAERLVRMFSFVGDVVLDPFAGTGTTLIAAARWG-RRALGVELVPRYAQLAKERFARE  280 (297)
T ss_dssp             HHHHHHHHHHCCTTCEEEETTCTTTHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHcC-CeEEEEeCCHHHHHHHHHHHHHh
Confidence            44444444444678999999999999999998885 57999999999999999998765

>3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli}

Probab=98.15  E-value=3.9e-06  Score=71.80  Aligned_cols=58  Identities=21%  Similarity=0.296  Sum_probs=47.1

Q ss_pred             ccCCCeEEEEcCcchHHHHHHHHh--CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccc
Q 026513           68 IKGGELFLDYGTGSGILGIAAIKF--GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTF  133 (237)
Q Consensus        68 ~~~~~~vLDlG~G~G~~~~~la~~--~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~  133 (237)
                      +++|..++|..||.|..+..++..  +..+|+|+|.++.+++.|+ ++  .  ..   ++.+++++..
T Consensus        55 i~pggiyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp~Al~~A~-rL--~--~~---Rv~lv~~nF~  114 (347)
T 3tka_A           55 IRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAK-TI--D--DP---RFSIIHGPFS  114 (347)
T ss_dssp             CCTTCEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHT-TC--C--CT---TEEEEESCGG
T ss_pred             CCCCCEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHH-hh--c--CC---cEEEEeCCHH
Confidence            467899999999999999998865  4578999999999999884 33  1  11   4888888875

>3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus}

Probab=98.06  E-value=3e-05  Score=64.85  Aligned_cols=109  Identities=10%  Similarity=0.110  Sum_probs=71.9

Q ss_pred             ccCCCeEEEEcC------cchHHHHHHHHh-CC-CeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccc
Q 026513           68 IKGGELFLDYGT------GSGILGIAAIKF-GA-AMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNE  139 (237)
Q Consensus        68 ~~~~~~vLDlG~------G~G~~~~~la~~-~~-~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~  139 (237)
                      .+.|.+|||+|+      -+|..  .+.+. +. ..|+++|+.+-..           ..     -.++++|..+     
T Consensus       107 vp~gmrVLDLGA~s~kg~APGS~--VLr~~~p~g~~VVavDL~~~~s-----------da-----~~~IqGD~~~-----  163 (344)
T 3r24_A          107 VPYNMRVIHFGAGSDKGVAPGTA--VLRQWLPTGTLLVDSDLNDFVS-----------DA-----DSTLIGDCAT-----  163 (344)
T ss_dssp             CCTTCEEEEESCCCTTSBCHHHH--HHHHHSCTTCEEEEEESSCCBC-----------SS-----SEEEESCGGG-----
T ss_pred             ecCCCEEEeCCCCCCCCCCCcHH--HHHHhCCCCcEEEEeeCccccc-----------CC-----CeEEEccccc-----
Confidence            467899999996      56773  33333 32 4899999998331           11     1347888652     


Q ss_pred             cccccccccccccccCCCCCCceeEEEEeCCh--------------HHHHHHHHHHhHhcCCCeEEEEeccCCCCHHHHH
Q 026513          140 RVDGVVEDLSSHKIRGISQTEKYDVVIANILL--------------NPLLQLADHIVSYAKPGAVVGISGILSEQLPHII  205 (237)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~--------------~~~~~~l~~~~~~L~~gG~liis~~~~~~~~~~~  205 (237)
                                      .....+||+|++++.-              +.....+.-+.+.|+|||.+++--|..+....+.
T Consensus       164 ----------------~~~~~k~DLVISDMAPNtTG~~D~d~~Rs~~L~ElALdfA~~~LkpGGsFvVKVFQGsg~~~L~  227 (344)
T 3r24_A          164 ----------------VHTANKWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEHSWNADLY  227 (344)
T ss_dssp             ----------------EEESSCEEEEEECCCCTTSCSSCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSSSCCHHHH
T ss_pred             ----------------cccCCCCCEEEecCCCCcCCccccchhHHHHHHHHHHHHHHHhCcCCCEEEEEEecCCCHHHHH
Confidence                            2225789999998741              2334456778889999999999988877744444


Q ss_pred             HHHhhccccce
Q 026513          206 NRYSEFLEDIL  216 (237)
Q Consensus       206 ~~~~~~~~~~~  216 (237)
                      + +...|..+.
T Consensus       228 ~-lrk~F~~VK  237 (344)
T 3r24_A          228 K-LMGHFSWWT  237 (344)
T ss_dssp             H-HHTTEEEEE
T ss_pred             H-HHhhCCeEE
Confidence            4 444554443

>3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana}

Probab=98.06  E-value=2.5e-05  Score=68.13  Aligned_cols=42  Identities=12%  Similarity=0.080  Sum_probs=32.9

Q ss_pred             CCCCCCceeEEEEeCChHHHH-----------------------------------------HHHHHHhHhcCCCeEEEE
Q 026513          155 GISQTEKYDVVIANILLNPLL-----------------------------------------QLADHIVSYAKPGAVVGI  193 (237)
Q Consensus       155 ~~~~~~~fD~I~~n~~~~~~~-----------------------------------------~~l~~~~~~L~~gG~lii  193 (237)
                      .+.++.++|+|+++..+|++.                                         .+++...+.|+|||.+++
T Consensus       144 rlfP~~S~d~v~Ss~aLHWls~~p~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Qf~~D~~~fL~~ra~eL~pGG~mvl  223 (374)
T 3b5i_A          144 RLFPARTIDFFHSAFSLHWLSQVPESVTDRRSAAYNRGRVFIHGAGEKTTTAYKRQFQADLAEFLRARAAEVKRGGAMFL  223 (374)
T ss_dssp             CCSCTTCEEEEEEESCTTBCSSCCGGGGCTTSTTCCTTTSSSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred             ccCCCcceEEEEecceeeeeccCchhhhccccccccCCceEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEE
Confidence            345678999999998865532                                         357788999999999999


Q ss_pred             ecc
Q 026513          194 SGI  196 (237)
Q Consensus       194 s~~  196 (237)
                      +..
T Consensus       224 ~~~  226 (374)
T 3b5i_A          224 VCL  226 (374)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            744

>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11

Probab=98.05  E-value=1.1e-05  Score=66.80  Aligned_cols=59  Identities=25%  Similarity=0.311  Sum_probs=48.4

Q ss_pred             HHHHHHHHhhccCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcC
Q 026513           58 KLCLLLLRRLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNN  117 (237)
Q Consensus        58 ~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~  117 (237)
                      .++...++....+|..|||.+||+|+.++++.+.| .+++|+|+++.+++.|++++..++
T Consensus       200 ~l~~~~i~~~~~~~~~vlD~f~GsGtt~~~a~~~g-r~~ig~e~~~~~~~~~~~r~~~~~  258 (260)
T 1g60_A          200 DLIERIIRASSNPNDLVLDCFMGSGTTAIVAKKLG-RNFIGCDMNAEYVNQANFVLNQLE  258 (260)
T ss_dssp             HHHHHHHHHHCCTTCEEEESSCTTCHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHC--
T ss_pred             HHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHcC-CeEEEEeCCHHHHHHHHHHHHhcc
Confidence            45555555555789999999999999999998885 679999999999999999988665

>2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A*

Probab=97.96  E-value=5.4e-05  Score=66.17  Aligned_cols=103  Identities=12%  Similarity=0.009  Sum_probs=63.5

Q ss_pred             CCeEEEEcCcchHHHHHHHHh------------------CCCeEEEEeCC-----------HHHHHHHHHHHHHcCCCCC
Q 026513           71 GELFLDYGTGSGILGIAAIKF------------------GAAMSVGADID-----------PQAIKSAHQNAALNNIGPK  121 (237)
Q Consensus        71 ~~~vLDlG~G~G~~~~~la~~------------------~~~~v~~vD~s-----------~~~i~~a~~~~~~~~~~~~  121 (237)
                      ..+|+|+|||+|..++.+...                  +.-+|+..|..           +...+.+++   ..+-...
T Consensus        53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~~---~~g~~~~  129 (384)
T 2efj_A           53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEK---ENGRKIG  129 (384)
T ss_dssp             EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHHH---HTCCCTT
T ss_pred             ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhhh---hccCCCC
Confidence            468999999999888765532                  22457788877           444433322   1221111


Q ss_pred             cceEEeccCccccccccccccccccccccccccCCCCCCceeEEEEeCChHHHH--------------------------
Q 026513          122 KMKLHLVPDRTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLNPLL--------------------------  175 (237)
Q Consensus       122 ~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~~~~~--------------------------  175 (237)
                      ..-+.-+.+.+..                    .+.+..++|+|+++..+|++.                          
T Consensus       130 ~~f~~gvpgSFy~--------------------rlfp~~S~d~v~Ss~aLHWls~~p~~l~~~~s~~~nkg~i~i~~~sp  189 (384)
T 2efj_A          130 SCLIGAMPGSFYS--------------------RLFPEESMHFLHSCYCLHWLSQVPSGLVTELGISVNKGCIYSSKASR  189 (384)
T ss_dssp             SEEEEECCSCTTS--------------------CCSCTTCEEEEEEESCTTBCSSSCCC------CCCCTTCSSSCTTSC
T ss_pred             ceEEEecchhhhh--------------------ccCCCCceEEEEecceeeecCCCchhhhccccccccCCceEecCCCC
Confidence            1112223344432                    456688999999998865532                          


Q ss_pred             ----------------HHHHHHhHhcCCCeEEEEecc
Q 026513          176 ----------------QLADHIVSYAKPGAVVGISGI  196 (237)
Q Consensus       176 ----------------~~l~~~~~~L~~gG~liis~~  196 (237)
                                      .+++...+.|+|||+++++..
T Consensus       190 ~~v~~ay~~Qf~~D~~~FL~~Ra~eL~pGG~mvl~~~  226 (384)
T 2efj_A          190 PPIQKAYLDQFTKDFTTFLRIHSEELISRGRMLLTFI  226 (384)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccCCeEEEEEe
Confidence                            125556899999999999754

>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24

Probab=97.86  E-value=0.00015  Score=62.78  Aligned_cols=84  Identities=11%  Similarity=0.027  Sum_probs=63.9

Q ss_pred             CcccccCCCCchhHHHHHHHHHhh-cc------CCCeEEEEcCcchHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHH
Q 026513           44 NPGLAFGSGEHATTKLCLLLLRRL-IK------GGELFLDYGTGSGILGIAAIKF-GAAMSVGADIDPQAIKSAHQNAAL  115 (237)
Q Consensus        44 ~~~~~f~~g~~~~~~~~~~~l~~~-~~------~~~~vLDlG~G~G~~~~~la~~-~~~~v~~vD~s~~~i~~a~~~~~~  115 (237)
                      .+.-.||...-.....+.+.+... +.      ++..|||||+|.|.+|..++.. ...+|+++|+++..+...++.. .
T Consensus        25 ~~kk~lGQnFL~d~~i~~~Iv~~~~l~~~~~~~~~~~VlEIGPG~G~LT~~Ll~~~~~~~vvavE~D~~l~~~L~~~~-~  103 (353)
T 1i4w_A           25 KLKFFYGFKYLWNPTVYNKIFDKLDLTKTYKHPEELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKF-E  103 (353)
T ss_dssp             SSCCGGGCCCBCCHHHHHHHHHHHCGGGTCCCTTTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHT-T
T ss_pred             CCCCCCCcCccCCHHHHHHHHHhccCCcccCcCCCCEEEEECCCCCHHHHHHHhhCCCCEEEEEecCHHHHHHHHHhc-c
Confidence            355677777666666666666553 33      3589999999999999999975 4678999999999999888765 2


Q ss_pred             cCCCCCcceEEeccCcccc
Q 026513          116 NNIGPKKMKLHLVPDRTFT  134 (237)
Q Consensus       116 ~~~~~~~~~v~~~~~d~~~  134 (237)
                        ..    ++.++.+|+.+
T Consensus       104 --~~----~l~ii~~D~l~  116 (353)
T 1i4w_A          104 --GS----PLQILKRDPYD  116 (353)
T ss_dssp             --TS----SCEEECSCTTC
T ss_pred             --CC----CEEEEECCccc
Confidence              12    37888999864

>3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157}

Probab=97.72  E-value=0.00022  Score=62.20  Aligned_cols=107  Identities=20%  Similarity=0.205  Sum_probs=70.5

Q ss_pred             CeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccccccc
Q 026513           72 ELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDLSSH  151 (237)
Q Consensus        72 ~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~  151 (237)
                      .+++|+.||.|.+++.+.+.|...+.++|+++.+++..+.|..     +    ..++++|+.+....+     +.     
T Consensus         3 ~~vidLFsG~GGlslG~~~aG~~~v~avE~d~~a~~t~~~N~~-----~----~~~~~~DI~~~~~~~-----~~-----   63 (376)
T 3g7u_A            3 LNVIDLFSGVGGLSLGAARAGFDVKMAVEIDQHAINTHAINFP-----R----SLHVQEDVSLLNAEI-----IK-----   63 (376)
T ss_dssp             CEEEEETCTTSHHHHHHHHHTCEEEEEECSCHHHHHHHHHHCT-----T----SEEECCCGGGCCHHH-----HH-----
T ss_pred             CeEEEEccCcCHHHHHHHHCCCcEEEEEeCCHHHHHHHHHhCC-----C----CceEecChhhcCHHH-----HH-----
Confidence            4799999999999999999998888999999999988887742     1    446678876432110     00     


Q ss_pred             cccCCCCCCceeEEEEeCCh---------------H-HHHHHHHHHhHhcCCCeEEEE--eccCCCC
Q 026513          152 KIRGISQTEKYDVVIANILL---------------N-PLLQLADHIVSYAKPGAVVGI--SGILSEQ  200 (237)
Q Consensus       152 ~~~~~~~~~~fD~I~~n~~~---------------~-~~~~~l~~~~~~L~~gG~lii--s~~~~~~  200 (237)
                        ........+|+|+..||.               . .+..+ -++...++|.-.++=  .++++..
T Consensus        64 --~~~~~~~~~D~i~ggpPCQ~fS~ag~~~~~d~r~~L~~~~-~~~v~~~~P~~~v~ENV~gl~s~~  127 (376)
T 3g7u_A           64 --GFFKNDMPIDGIIGGPPCQGFSSIGKGNPDDSRNQLYMHF-YRLVSELQPLFFLAENVPGIMQEK  127 (376)
T ss_dssp             --HHHCSCCCCCEEEECCCCCTTC-------CHHHHHHHHHH-HHHHHHHCCSEEEEEECTTTTCGG
T ss_pred             --hhcccCCCeeEEEecCCCCCcccccCCCCCCchHHHHHHH-HHHHHHhCCCEEEEecchHhhccC
Confidence              000124579999999982               1 11223 335556789765552  2555443

>1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26

Probab=97.53  E-value=0.00027  Score=60.90  Aligned_cols=112  Identities=13%  Similarity=0.130  Sum_probs=71.9

Q ss_pred             CeEEEEcCcchHHHHHHHHhC--CCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccccc
Q 026513           72 ELFLDYGTGSGILGIAAIKFG--AAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDLS  149 (237)
Q Consensus        72 ~~vLDlG~G~G~~~~~la~~~--~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~  149 (237)
                      .+|+|+.||.|.+++.+.+.|  ...+.++|+++.+++.++.|...         ..++.+|+.+....           
T Consensus         3 ~~v~dLFaG~Gg~~~g~~~~G~~~~~v~~~E~d~~a~~~~~~N~~~---------~~~~~~Di~~~~~~-----------   62 (343)
T 1g55_A            3 LRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFPH---------TQLLAKTIEGITLE-----------   62 (343)
T ss_dssp             EEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCTT---------SCEECSCGGGCCHH-----------
T ss_pred             CeEEEeCcCccHHHHHHHHCCCCceEEEEEeCCHHHHHHHHHhccc---------cccccCCHHHccHh-----------
Confidence            479999999999999999888  56799999999999999888531         23557777632100           


Q ss_pred             cccccCCCCCCceeEEEEeCChHHH------------H-HHH---HHHhHhcC--CCeEEE--EeccCCC-CHHHHHHHH
Q 026513          150 SHKIRGISQTEKYDVVIANILLNPL------------L-QLA---DHIVSYAK--PGAVVG--ISGILSE-QLPHIINRY  208 (237)
Q Consensus       150 ~~~~~~~~~~~~fD~I~~n~~~~~~------------~-~~l---~~~~~~L~--~gG~li--is~~~~~-~~~~~~~~~  208 (237)
                           .+ +...+|+|+.+||...+            + .++   -++...++  |.-.++  +.++... ....+...+
T Consensus        63 -----~~-~~~~~D~l~~gpPCq~fS~ag~~~g~~d~r~~l~~~~~~~i~~~~~~P~~~~~ENV~~l~~~~~~~~i~~~l  136 (343)
T 1g55_A           63 -----EF-DRLSFDMILMSPPCQPFTRIGRQGDMTDSRTNSFLHILDILPRLQKLPKYILLENVKGFEVSSTRDLLIQTI  136 (343)
T ss_dssp             -----HH-HHHCCSEEEECCC------------------CHHHHHHHHGGGCSSCCSEEEEEEETTGGGSHHHHHHHHHH
T ss_pred             -----Hc-CcCCcCEEEEcCCCcchhhcCCcCCccCccchHHHHHHHHHHHhcCCCCEEEEeCCccccCHHHHHHHHHHH
Confidence                 00 01268999999983111            0 122   23555667  886666  5666533 233444544


Q ss_pred             h
Q 026513          209 S  209 (237)
Q Consensus       209 ~  209 (237)
                      .
T Consensus       137 ~  137 (343)
T 1g55_A          137 E  137 (343)
T ss_dssp             H
T ss_pred             H
Confidence            4

>2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ...

Probab=97.39  E-value=0.00054  Score=58.65  Aligned_cols=44  Identities=25%  Similarity=0.221  Sum_probs=40.2

Q ss_pred             CCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHH
Q 026513           71 GELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAA  114 (237)
Q Consensus        71 ~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~  114 (237)
                      +.+++|++||.|.+++.+.+.|...+.++|+++.+++..+.|..
T Consensus        11 ~~~~~dLFaG~Gg~~~g~~~aG~~~v~~~e~d~~a~~t~~~N~~   54 (327)
T 2c7p_A           11 GLRFIDLFAGLGGFRLALESCGAECVYSNEWDKYAQEVYEMNFG   54 (327)
T ss_dssp             TCEEEEETCTTTHHHHHHHHTTCEEEEEECCCHHHHHHHHHHHS
T ss_pred             CCcEEEECCCcCHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHcC
Confidence            56899999999999999999999889999999999999988863

>1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35

Probab=97.34  E-value=6.8e-05  Score=64.99  Aligned_cols=105  Identities=12%  Similarity=0.067  Sum_probs=66.0

Q ss_pred             CeEEEEcCcchHHHHHHHHh-----------------CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccc
Q 026513           72 ELFLDYGTGSGILGIAAIKF-----------------GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFT  134 (237)
Q Consensus        72 ~~vLDlG~G~G~~~~~la~~-----------------~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~  134 (237)
                      .+|+|+||++|..++.+...                 +.-+|+..|........+-+.+....-.....-+.-+.+.+..
T Consensus        53 ~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~~~~~~~~f~~gvpgSFy~  132 (359)
T 1m6e_X           53 LAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGSFYG  132 (359)
T ss_dssp             ECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESCSSS
T ss_pred             eEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcchhcccCCCEEEEecchhhhh
Confidence            57999999999655433211                 2246888888887777766655431100000111222333332


Q ss_pred             ccccccccccccccccccccCCCCCCceeEEEEeCChHHH------------------------------------HHHH
Q 026513          135 ASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLNPL------------------------------------LQLA  178 (237)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~~~~------------------------------------~~~l  178 (237)
                                          .+.+..++|+|+++..+|++                                    ..++
T Consensus       133 --------------------rlfp~~S~d~v~Ss~aLHWls~~p~~l~~nkg~i~~~~~~p~~v~~ay~~Qf~~D~~~FL  192 (359)
T 1m6e_X          133 --------------------RLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFL  192 (359)
T ss_dssp             --------------------CCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHH
T ss_pred             --------------------ccCCCCceEEEEehhhhhhcccCchhhhccCCceEecCCCCHHHHHHHHHHHHHHHHHHH
Confidence                                45668899999998876543                                    2347


Q ss_pred             HHHhHhcCCCeEEEEecc
Q 026513          179 DHIVSYAKPGAVVGISGI  196 (237)
Q Consensus       179 ~~~~~~L~~gG~liis~~  196 (237)
                      +.-.+.|+|||++++...
T Consensus       193 ~~Ra~EL~pGG~mvl~~~  210 (359)
T 1m6e_X          193 RCRAQEVVPGGRMVLTIL  210 (359)
T ss_dssp             HHHHHHBCTTCEEEEEEE
T ss_pred             HHHHHHhcCCceEEEEEe
Confidence            778999999999999643

>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11

Probab=97.19  E-value=0.00058  Score=58.26  Aligned_cols=60  Identities=23%  Similarity=0.284  Sum_probs=49.0

Q ss_pred             HHHHHHHHhhccCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCC
Q 026513           58 KLCLLLLRRLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNI  118 (237)
Q Consensus        58 ~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~  118 (237)
                      .++...++....+|..|||..||+|+.+.++.+.| .+.+|+|+++..++.+++++...+.
T Consensus       240 ~l~~~~i~~~~~~~~~VlDpF~GsGtt~~aa~~~g-r~~ig~e~~~~~~~~~~~r~~~~~~  299 (323)
T 1boo_A          240 KLPEFFIRMLTEPDDLVVDIFGGSNTTGLVAERES-RKWISFEMKPEYVAASAFRFLDNNI  299 (323)
T ss_dssp             HHHHHHHHHHCCTTCEEEETTCTTCHHHHHHHHTT-CEEEEEESCHHHHHHHHGGGSCSCS
T ss_pred             HHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHcC-CCEEEEeCCHHHHHHHHHHHHhccc
Confidence            45555555455789999999999999999988885 6699999999999999998775553

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1

Probab=97.15  E-value=0.0013  Score=56.94  Aligned_cols=102  Identities=16%  Similarity=0.230  Sum_probs=66.8

Q ss_pred             ccCCCeEEEEcCcc-hHHHHHHHH-hCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccc
Q 026513           68 IKGGELFLDYGTGS-GILGIAAIK-FGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVV  145 (237)
Q Consensus        68 ~~~~~~vLDlG~G~-G~~~~~la~-~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  145 (237)
                      +++|.+||-+|+|. |.+++.+++ .|..+|+++|.++..++.+++.    |...   -+.....|+.+           
T Consensus       188 ~~~g~~VlV~GaG~vG~~a~qlak~~Ga~~Vi~~~~~~~~~~~a~~l----Ga~~---vi~~~~~~~~~-----------  249 (371)
T 1f8f_A          188 VTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQL----GATH---VINSKTQDPVA-----------  249 (371)
T ss_dssp             CCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHH----TCSE---EEETTTSCHHH-----------
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHc----CCCE---EecCCccCHHH-----------
Confidence            57899999999986 777777776 4776899999999988887643    3321   01111111110           


Q ss_pred             cccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEeccC
Q 026513          146 EDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGIL  197 (237)
Q Consensus       146 ~~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~~~  197 (237)
                            .+.... .+.+|+|+......   ..+..+.+.|+++|++++.+..
T Consensus       250 ------~~~~~~-~gg~D~vid~~g~~---~~~~~~~~~l~~~G~iv~~G~~  291 (371)
T 1f8f_A          250 ------AIKEIT-DGGVNFALESTGSP---EILKQGVDALGILGKIAVVGAP  291 (371)
T ss_dssp             ------HHHHHT-TSCEEEEEECSCCH---HHHHHHHHTEEEEEEEEECCCC
T ss_pred             ------HHHHhc-CCCCcEEEECCCCH---HHHHHHHHHHhcCCEEEEeCCC
Confidence                  011112 23799999766432   3457788899999999986554

>3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A*

Probab=97.13  E-value=0.0016  Score=55.41  Aligned_cols=70  Identities=19%  Similarity=0.165  Sum_probs=53.6

Q ss_pred             CeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccccccc
Q 026513           72 ELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDLSSH  151 (237)
Q Consensus        72 ~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~  151 (237)
                      .+|||+.||.|.+.+.+.+.|..-+.++|+++.+++..+.|..          -.++.+|+.+....             
T Consensus         1 mkvidLFsG~GG~~~G~~~aG~~~v~a~e~d~~a~~ty~~N~~----------~~~~~~DI~~i~~~-------------   57 (331)
T 3ubt_Y            1 MNLISLFSGAGGLDLGFQKAGFRIICANEYDKSIWKTYESNHS----------AKLIKGDISKISSD-------------   57 (331)
T ss_dssp             CEEEEESCTTCHHHHHHHHTTCEEEEEEECCTTTHHHHHHHCC----------SEEEESCGGGCCGG-------------
T ss_pred             CeEEEeCcCccHHHHHHHHCCCEEEEEEeCCHHHHHHHHHHCC----------CCcccCChhhCCHh-------------
Confidence            3799999999999999988898888999999999888887731          23456777632111             


Q ss_pred             cccCCCCCCceeEEEEeCC
Q 026513          152 KIRGISQTEKYDVVIANIL  170 (237)
Q Consensus       152 ~~~~~~~~~~fD~I~~n~~  170 (237)
                         .   -.+.|+++..+|
T Consensus        58 ---~---~~~~D~l~ggpP   70 (331)
T 3ubt_Y           58 ---E---FPKCDGIIGGPP   70 (331)
T ss_dssp             ---G---SCCCSEEECCCC
T ss_pred             ---h---CCcccEEEecCC
Confidence               1   246899999888

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*

Probab=97.09  E-value=0.006  Score=52.75  Aligned_cols=103  Identities=22%  Similarity=0.273  Sum_probs=67.1

Q ss_pred             hccCCCeEEEEcCcc-hHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccc
Q 026513           67 LIKGGELFLDYGTGS-GILGIAAIKF-GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGV  144 (237)
Q Consensus        67 ~~~~~~~vLDlG~G~-G~~~~~la~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~  144 (237)
                      .+++|.+||-.|+|. |.+++.+++. |+.+|+++|.++..++.+++.    |...   -+.....|+.+          
T Consensus       179 ~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l----Ga~~---vi~~~~~~~~~----------  241 (370)
T 4ej6_A          179 GIKAGSTVAILGGGVIGLLTVQLARLAGATTVILSTRQATKRRLAEEV----GATA---TVDPSAGDVVE----------  241 (370)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHH----TCSE---EECTTSSCHHH----------
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHc----CCCE---EECCCCcCHHH----------
Confidence            367899999999875 7777777764 776899999999988877653    4331   01111122110          


Q ss_pred             ccccccccccC---CCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEeccC
Q 026513          145 VEDLSSHKIRG---ISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGIL  197 (237)
Q Consensus       145 ~~~~~~~~~~~---~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~~~  197 (237)
                             .+..   .. .+.+|+|+-....   ...+..+.+.|+++|.+++.+..
T Consensus       242 -------~i~~~~~~~-~gg~Dvvid~~G~---~~~~~~~~~~l~~~G~vv~~G~~  286 (370)
T 4ej6_A          242 -------AIAGPVGLV-PGGVDVVIECAGV---AETVKQSTRLAKAGGTVVILGVL  286 (370)
T ss_dssp             -------HHHSTTSSS-TTCEEEEEECSCC---HHHHHHHHHHEEEEEEEEECSCC
T ss_pred             -------HHHhhhhcc-CCCCCEEEECCCC---HHHHHHHHHHhccCCEEEEEecc
Confidence                   0111   22 2489999976542   23456778899999999986543

>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima}

Probab=96.98  E-value=0.0051  Score=53.80  Aligned_cols=106  Identities=15%  Similarity=0.143  Sum_probs=65.0

Q ss_pred             ccCCCeEEEEcCcc-hHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccc
Q 026513           68 IKGGELFLDYGTGS-GILGIAAIKF-GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVV  145 (237)
Q Consensus        68 ~~~~~~vLDlG~G~-G~~~~~la~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  145 (237)
                      +++|.+||-+|+|. |.+++.+++. |..+|+++|.++..++.+++.    |...   -+.....|+.            
T Consensus       211 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~l----Ga~~---vi~~~~~~~~------------  271 (404)
T 3ip1_A          211 IRPGDNVVILGGGPIGLAAVAILKHAGASKVILSEPSEVRRNLAKEL----GADH---VIDPTKENFV------------  271 (404)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHH----TCSE---EECTTTSCHH------------
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHc----CCCE---EEcCCCCCHH------------
Confidence            56889999999875 6777777764 666899999999988887653    4321   0111111111            


Q ss_pred             cccccccccCCCCCCceeEEEEeCChH--HHHHHHHHHhHhcCCCeEEEEeccC
Q 026513          146 EDLSSHKIRGISQTEKYDVVIANILLN--PLLQLADHIVSYAKPGAVVGISGIL  197 (237)
Q Consensus       146 ~~~~~~~~~~~~~~~~fD~I~~n~~~~--~~~~~l~~~~~~L~~gG~liis~~~  197 (237)
                      +     .+........+|+|+-.....  .+..+++.+.+.++++|.+++.+..
T Consensus       272 ~-----~i~~~t~g~g~D~vid~~g~~~~~~~~~~~~l~~~~~~~G~iv~~G~~  320 (404)
T 3ip1_A          272 E-----AVLDYTNGLGAKLFLEATGVPQLVWPQIEEVIWRARGINATVAIVARA  320 (404)
T ss_dssp             H-----HHHHHTTTCCCSEEEECSSCHHHHHHHHHHHHHHCSCCCCEEEECSCC
T ss_pred             H-----HHHHHhCCCCCCEEEECCCCcHHHHHHHHHHHHhccCCCcEEEEeCCC
Confidence            0     011222245799999765443  3333334344555999999986543

>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A

Probab=96.95  E-value=0.003  Score=54.10  Aligned_cols=103  Identities=17%  Similarity=0.168  Sum_probs=66.1

Q ss_pred             hccCCCeEEEEcCcc-hHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccc
Q 026513           67 LIKGGELFLDYGTGS-GILGIAAIKF-GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGV  144 (237)
Q Consensus        67 ~~~~~~~vLDlG~G~-G~~~~~la~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~  144 (237)
                      .+++|.+||-+|+|. |.+++.+++. |..+|+++|.++..++.+++.    |...   -+.....|+.+          
T Consensus       163 ~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~l----Ga~~---vi~~~~~~~~~----------  225 (352)
T 3fpc_A          163 NIKLGDTVCVIGIGPVGLMSVAGANHLGAGRIFAVGSRKHCCDIALEY----GATD---IINYKNGDIVE----------  225 (352)
T ss_dssp             TCCTTCCEEEECCSHHHHHHHHHHHTTTCSSEEEECCCHHHHHHHHHH----TCCE---EECGGGSCHHH----------
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHh----CCce---EEcCCCcCHHH----------
Confidence            367899999999876 7777777765 666899999999888877653    4321   01111112110          


Q ss_pred             ccccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEecc
Q 026513          145 VEDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGI  196 (237)
Q Consensus       145 ~~~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~~  196 (237)
                             .+........+|+|+-.....   ..+..+.+.|+++|.+++.+.
T Consensus       226 -------~v~~~t~g~g~D~v~d~~g~~---~~~~~~~~~l~~~G~~v~~G~  267 (352)
T 3fpc_A          226 -------QILKATDGKGVDKVVIAGGDV---HTFAQAVKMIKPGSDIGNVNY  267 (352)
T ss_dssp             -------HHHHHTTTCCEEEEEECSSCT---THHHHHHHHEEEEEEEEECCC
T ss_pred             -------HHHHHcCCCCCCEEEECCCCh---HHHHHHHHHHhcCCEEEEecc
Confidence                   011222245799999755331   345667789999999987544

>1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A

Probab=96.95  E-value=0.0015  Score=55.63  Aligned_cols=59  Identities=25%  Similarity=0.295  Sum_probs=45.6

Q ss_pred             HHHHHHHHhhccCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCH---HHHHHHHHHHHHcC
Q 026513           58 KLCLLLLRRLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDP---QAIKSAHQNAALNN  117 (237)
Q Consensus        58 ~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~---~~i~~a~~~~~~~~  117 (237)
                      .++...+.....+|..|||..||+|+.+.++.+.| .+.+|+|+++   ..++.+++++...+
T Consensus       230 ~l~~~~i~~~~~~~~~vlDpF~GsGtt~~aa~~~~-r~~ig~e~~~~~~~~~~~~~~Rl~~~~  291 (319)
T 1eg2_A          230 AVIERLVRALSHPGSTVLDFFAGSGVTARVAIQEG-RNSICTDAAPVFKEYYQKQLTFLQDDG  291 (319)
T ss_dssp             HHHHHHHHHHSCTTCEEEETTCTTCHHHHHHHHHT-CEEEEEESSTHHHHHHHHHHHHC----
T ss_pred             HHHHHHHHHhCCCCCEEEecCCCCCHHHHHHHHcC-CcEEEEECCccHHHHHHHHHHHHHHcc
Confidence            34444444445789999999999999999998885 6699999999   99999999877554

>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida}

Probab=96.86  E-value=0.0024  Score=55.72  Aligned_cols=106  Identities=20%  Similarity=0.292  Sum_probs=67.0

Q ss_pred             hccCCCeEEEEcCcc-hHHHHHHHH-hCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcc-ccccccccccc
Q 026513           67 LIKGGELFLDYGTGS-GILGIAAIK-FGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRT-FTASMNERVDG  143 (237)
Q Consensus        67 ~~~~~~~vLDlG~G~-G~~~~~la~-~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~-~~~~~~~~~~~  143 (237)
                      .+++|.+||.+|+|. |.+++.+++ .|..+|+++|.++..++.+++    .|..    -+.....|. .+         
T Consensus       182 ~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~----lGa~----~i~~~~~~~~~~---------  244 (398)
T 2dph_A          182 GVKPGSHVYIAGAGPVGRCAAAGARLLGAACVIVGDQNPERLKLLSD----AGFE----TIDLRNSAPLRD---------  244 (398)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHT----TTCE----EEETTSSSCHHH---------
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH----cCCc----EEcCCCcchHHH---------
Confidence            367899999999986 788888876 477689999999988877753    2321    122111121 10         


Q ss_pred             cccccccccccCCCCCCceeEEEEeCChHH-----------HHHHHHHHhHhcCCCeEEEEeccC
Q 026513          144 VVEDLSSHKIRGISQTEKYDVVIANILLNP-----------LLQLADHIVSYAKPGAVVGISGIL  197 (237)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~fD~I~~n~~~~~-----------~~~~l~~~~~~L~~gG~liis~~~  197 (237)
                              .+........+|+|+-......           ....+..+.+.|+++|++++.+..
T Consensus       245 --------~~~~~~~g~g~Dvvid~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~gG~iv~~G~~  301 (398)
T 2dph_A          245 --------QIDQILGKPEVDCGVDAVGFEAHGLGDEANTETPNGALNSLFDVVRAGGAIGIPGIY  301 (398)
T ss_dssp             --------HHHHHHSSSCEEEEEECSCTTCBCSGGGTTSBCTTHHHHHHHHHEEEEEEEECCSCC
T ss_pred             --------HHHHHhCCCCCCEEEECCCCccccccccccccccHHHHHHHHHHHhcCCEEEEeccc
Confidence                    0011112347999997654321           012457778899999999876544

>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa}

Probab=96.84  E-value=0.0074  Score=51.83  Aligned_cols=106  Identities=21%  Similarity=0.204  Sum_probs=66.8

Q ss_pred             ccCCCeEEEEcCcc-hHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccc
Q 026513           68 IKGGELFLDYGTGS-GILGIAAIKF-GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVV  145 (237)
Q Consensus        68 ~~~~~~vLDlG~G~-G~~~~~la~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  145 (237)
                      +++|.+||-.|+|. |.+++.+++. |+.+|+++|.++..++.+++. . ...      +.+...+...       .++.
T Consensus       177 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l-~-~~~------~~~~~~~~~~-------~~~~  241 (363)
T 3m6i_A          177 VRLGDPVLICGAGPIGLITMLCAKAAGACPLVITDIDEGRLKFAKEI-C-PEV------VTHKVERLSA-------EESA  241 (363)
T ss_dssp             CCTTCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHH-C-TTC------EEEECCSCCH-------HHHH
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh-c-hhc------ccccccccch-------HHHH
Confidence            57899999999875 7777777764 666799999999999988865 1 111      1111110000       0000


Q ss_pred             cccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEecc
Q 026513          146 EDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGI  196 (237)
Q Consensus       146 ~~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~~  196 (237)
                      +     .+........+|+|+-.....   ..+..+.+.|+++|++++.+.
T Consensus       242 ~-----~v~~~t~g~g~Dvvid~~g~~---~~~~~~~~~l~~~G~iv~~G~  284 (363)
T 3m6i_A          242 K-----KIVESFGGIEPAVALECTGVE---SSIAAAIWAVKFGGKVFVIGV  284 (363)
T ss_dssp             H-----HHHHHTSSCCCSEEEECSCCH---HHHHHHHHHSCTTCEEEECCC
T ss_pred             H-----HHHHHhCCCCCCEEEECCCCh---HHHHHHHHHhcCCCEEEEEcc
Confidence            0     011122245799999766432   245667889999999998654

>3tos_A CALS11; methyltransferase, calicheamicin, structural genomic protein structure initiative, PSI, natPro; HET: MSE SAH GLU; 1.55A {Micromonospora echinospora} PDB: 4gf5_A*

Probab=96.74  E-value=0.029  Score=46.17  Aligned_cols=111  Identities=14%  Similarity=0.124  Sum_probs=69.6

Q ss_pred             CCCeEEEEcCcchHHHHHHHHh--------CCCeEEEEeC-----CHH-------------------HHHHHHHHH----
Q 026513           70 GGELFLDYGTGSGILGIAAIKF--------GAAMSVGADI-----DPQ-------------------AIKSAHQNA----  113 (237)
Q Consensus        70 ~~~~vLDlG~G~G~~~~~la~~--------~~~~v~~vD~-----s~~-------------------~i~~a~~~~----  113 (237)
                      +| .|+|+|+-.|.-...++..        ..++|++.|.     .+.                   ..+..++.+    
T Consensus        70 pG-~ivE~GV~rG~S~~~~a~~~~~l~~~~~~r~v~~fDTFeG~P~~~~~D~~~~~~~~G~~~~~~~~~~~l~~~l~~~~  148 (257)
T 3tos_A           70 PG-VIMEFGVRFGRHLGTFAALRGVYEPYNPLRRIVGFDTFTGFPDVNDVDRVGPTAYQGRFAVPGGYPAYLKEVLDAHE  148 (257)
T ss_dssp             CS-EEEEECCTTCHHHHHHHHHHHHHCTTCTTCCEEEEECSSCCCSCCGGGTTSTTCSTTTTCCCTTHHHHHHHHHHHHH
T ss_pred             CC-eEEEEecccCHHHHHHHHHHHHhcccCCCCEEEEEECCCCCCCCccccccccccccCcccccchhHHHHHHHHHHHh
Confidence            44 7999999999877765531        2478999993     210                   011112211    


Q ss_pred             --HHcCCCCCcceEEeccCccccccccccccccccccccccccCCCCCCceeEEEEeCCh-HHHHHHHHHHhHhcCCCeE
Q 026513          114 --ALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILL-NPLLQLADHIVSYAKPGAV  190 (237)
Q Consensus       114 --~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~-~~~~~~l~~~~~~L~~gG~  190 (237)
                        +..+...  -++.++.|++.+..     ..+++.         .+..++|+++++.-. ......+..+...|+|||+
T Consensus       149 ~~~~~g~~~--~~i~li~G~~~dTL-----~~~l~~---------~~~~~~dlv~ID~D~Y~~t~~~le~~~p~l~~GGv  212 (257)
T 3tos_A          149 CSDFFGHVT--QRSVLVEGDVRETV-----PRYLAE---------NPQTVIALAYFDLDLYEPTKAVLEAIRPYLTKGSI  212 (257)
T ss_dssp             TTSTTTTSC--CSEEEEESCHHHHH-----HHHHHH---------CTTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEEE
T ss_pred             hhhhcCCCC--CcEEEEEecHHHHH-----HHHHHh---------CCCCceEEEEEcCcccchHHHHHHHHHHHhCCCcE
Confidence              1123211  14888899876311     111111         124579999998865 4556789999999999999


Q ss_pred             EEEeccC
Q 026513          191 VGISGIL  197 (237)
Q Consensus       191 liis~~~  197 (237)
                      +++.++.
T Consensus       213 Iv~DD~~  219 (257)
T 3tos_A          213 VAFDELD  219 (257)
T ss_dssp             EEESSTT
T ss_pred             EEEcCCC
Confidence            9998873

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A

Probab=96.70  E-value=0.0072  Score=51.86  Aligned_cols=104  Identities=18%  Similarity=0.256  Sum_probs=64.8

Q ss_pred             ccCCCeEEEEcCcc-hHHHHHHHH-hCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccc
Q 026513           68 IKGGELFLDYGTGS-GILGIAAIK-FGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVV  145 (237)
Q Consensus        68 ~~~~~~vLDlG~G~-G~~~~~la~-~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  145 (237)
                      +++|.+||-+|+|. |.+++.+++ .|..+|+++|.++..++.+++    .|...   -+.....|..         ++.
T Consensus       169 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~----lGa~~---vi~~~~~~~~---------~~~  232 (356)
T 1pl8_A          169 VTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKE----IGADL---VLQISKESPQ---------EIA  232 (356)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHH----TTCSE---EEECSSCCHH---------HHH
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH----hCCCE---EEcCcccccc---------hHH
Confidence            57899999999875 777777776 466689999999988877764    24321   0111100000         000


Q ss_pred             cccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEecc
Q 026513          146 EDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGI  196 (237)
Q Consensus       146 ~~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~~  196 (237)
                      +.     +..... ..+|+|+......   ..+....+.|+++|++++.+.
T Consensus       233 ~~-----i~~~~~-~g~D~vid~~g~~---~~~~~~~~~l~~~G~iv~~G~  274 (356)
T 1pl8_A          233 RK-----VEGQLG-CKPEVTIECTGAE---ASIQAGIYATRSGGTLVLVGL  274 (356)
T ss_dssp             HH-----HHHHHT-SCCSEEEECSCCH---HHHHHHHHHSCTTCEEEECSC
T ss_pred             HH-----HHHHhC-CCCCEEEECCCCh---HHHHHHHHHhcCCCEEEEEec
Confidence            00     001111 4799999766432   245667789999999998654

>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli}

Probab=96.69  E-value=0.013  Score=49.90  Aligned_cols=105  Identities=16%  Similarity=0.166  Sum_probs=66.4

Q ss_pred             hccCCCeEEEEcCcc-hHHHHHHHH-hCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccc
Q 026513           67 LIKGGELFLDYGTGS-GILGIAAIK-FGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGV  144 (237)
Q Consensus        67 ~~~~~~~vLDlG~G~-G~~~~~la~-~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~  144 (237)
                      ...+|.+||-.|+|. |.+++.+++ .|...++++|.++..++.+++.    |...   -+.....|..+         .
T Consensus       157 ~~~~g~~VlV~GaG~vG~~aiq~ak~~G~~~vi~~~~~~~k~~~a~~l----Ga~~---~i~~~~~~~~~---------~  220 (346)
T 4a2c_A          157 QGCENKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDISSEKLALAKSF----GAMQ---TFNSSEMSAPQ---------M  220 (346)
T ss_dssp             TCCTTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT----TCSE---EEETTTSCHHH---------H
T ss_pred             ccCCCCEEEEECCCCcchHHHHHHHHcCCcEEEEEechHHHHHHHHHc----CCeE---EEeCCCCCHHH---------H
Confidence            357899999999986 556666665 4778889999999988877653    4331   12211122110         0


Q ss_pred             ccccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEeccCC
Q 026513          145 VEDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILS  198 (237)
Q Consensus       145 ~~~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~~~~  198 (237)
                              .........+|+|+.....   ...++...++|+++|.+++.+...
T Consensus       221 --------~~~~~~~~g~d~v~d~~G~---~~~~~~~~~~l~~~G~~v~~g~~~  263 (346)
T 4a2c_A          221 --------QSVLRELRFNQLILETAGV---PQTVELAVEIAGPHAQLALVGTLH  263 (346)
T ss_dssp             --------HHHHGGGCSSEEEEECSCS---HHHHHHHHHHCCTTCEEEECCCCS
T ss_pred             --------HHhhcccCCcccccccccc---cchhhhhhheecCCeEEEEEeccC
Confidence                    0111223568888865532   234566778999999999876543

>2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens}

Probab=96.69  E-value=0.0028  Score=53.41  Aligned_cols=77  Identities=10%  Similarity=0.070  Sum_probs=55.2

Q ss_pred             cCCCeEEEEcCcchHHHHHHHHhCCCe--EEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccc
Q 026513           69 KGGELFLDYGTGSGILGIAAIKFGAAM--SVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVE  146 (237)
Q Consensus        69 ~~~~~vLDlG~G~G~~~~~la~~~~~~--v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  146 (237)
                      ....+++|+.||.|.+++.+.+.|...  +.++|+++.+++..+.|..     .    ..++.+|+.+....        
T Consensus        14 ~~~~~vidLFaG~GG~~~g~~~aG~~~~~v~a~E~d~~a~~ty~~N~~-----~----~~~~~~DI~~i~~~--------   76 (295)
T 2qrv_A           14 RKPIRVLSLFDGIATGLLVLKDLGIQVDRYIASEVCEDSITVGMVRHQ-----G----KIMYVGDVRSVTQK--------   76 (295)
T ss_dssp             CCCEEEEEETCTTTHHHHHHHHTTBCEEEEEEECCCHHHHHHHHHHTT-----T----CEEEECCGGGCCHH--------
T ss_pred             CCCCEEEEeCcCccHHHHHHHHCCCccceEEEEECCHHHHHHHHHhCC-----C----CceeCCChHHccHH--------
Confidence            345689999999999999998888776  7999999999888776642     1    23556777642211        


Q ss_pred             ccccccccCCCCCCceeEEEEeCC
Q 026513          147 DLSSHKIRGISQTEKYDVVIANIL  170 (237)
Q Consensus       147 ~~~~~~~~~~~~~~~fD~I~~n~~  170 (237)
                              .+...+.+|+++..+|
T Consensus        77 --------~i~~~~~~Dll~ggpP   92 (295)
T 2qrv_A           77 --------HIQEWGPFDLVIGGSP   92 (295)
T ss_dssp             --------HHHHTCCCSEEEECCC
T ss_pred             --------HhcccCCcCEEEecCC
Confidence                    0101146899999887

>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A*

Probab=96.65  E-value=0.0039  Score=53.25  Aligned_cols=103  Identities=17%  Similarity=0.214  Sum_probs=67.6

Q ss_pred             hccCCCeEEEEcCcc-hHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccc
Q 026513           67 LIKGGELFLDYGTGS-GILGIAAIKF-GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGV  144 (237)
Q Consensus        67 ~~~~~~~vLDlG~G~-G~~~~~la~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~  144 (237)
                      .+++|.+||-.|+|. |.+++.+++. |..+|+++|.+++.++.+++.    |...    +.-...+..+          
T Consensus       168 ~~~~g~~vlv~GaG~vG~~a~qla~~~g~~~Vi~~~~~~~~~~~~~~l----Ga~~----~i~~~~~~~~----------  229 (345)
T 3jv7_A          168 LLGPGSTAVVIGVGGLGHVGIQILRAVSAARVIAVDLDDDRLALAREV----GADA----AVKSGAGAAD----------  229 (345)
T ss_dssp             GCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHT----TCSE----EEECSTTHHH----------
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHc----CCCE----EEcCCCcHHH----------
Confidence            467899999999976 7777777764 678899999999988877643    4331    2111112110          


Q ss_pred             ccccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEeccC
Q 026513          145 VEDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGIL  197 (237)
Q Consensus       145 ~~~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~~~  197 (237)
                             .+........+|+|+-.....   ..++.+.+.|+++|.+++.+..
T Consensus       230 -------~v~~~t~g~g~d~v~d~~G~~---~~~~~~~~~l~~~G~iv~~G~~  272 (345)
T 3jv7_A          230 -------AIRELTGGQGATAVFDFVGAQ---STIDTAQQVVAVDGHISVVGIH  272 (345)
T ss_dssp             -------HHHHHHGGGCEEEEEESSCCH---HHHHHHHHHEEEEEEEEECSCC
T ss_pred             -------HHHHHhCCCCCeEEEECCCCH---HHHHHHHHHHhcCCEEEEECCC
Confidence                   011111234799999766432   3457788899999999986543

>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli}

Probab=96.60  E-value=0.012  Score=50.72  Aligned_cols=96  Identities=9%  Similarity=0.071  Sum_probs=63.8

Q ss_pred             CCCeEEEEc-Ccc-hHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccc
Q 026513           70 GGELFLDYG-TGS-GILGIAAIKF-GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVE  146 (237)
Q Consensus        70 ~~~~vLDlG-~G~-G~~~~~la~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  146 (237)
                      +|.+||-.| +|. |.+++.+++. +..+|+++|.++..++.+++    .|...    +.-...++.            +
T Consensus       171 ~g~~VlV~Ga~G~vG~~a~qlak~~~g~~Vi~~~~~~~~~~~~~~----lGad~----vi~~~~~~~------------~  230 (363)
T 4dvj_A          171 AAPAILIVGGAGGVGSIAVQIARQRTDLTVIATASRPETQEWVKS----LGAHH----VIDHSKPLA------------A  230 (363)
T ss_dssp             SEEEEEEESTTSHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHH----TTCSE----EECTTSCHH------------H
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHH----cCCCE----EEeCCCCHH------------H
Confidence            688999998 554 8888888875 77889999999988887764    34321    211111111            0


Q ss_pred             ccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEe
Q 026513          147 DLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGIS  194 (237)
Q Consensus       147 ~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis  194 (237)
                           .+... ..+.+|+|+.....   ...+..+.+.|+++|.+++.
T Consensus       231 -----~v~~~-~~~g~Dvvid~~g~---~~~~~~~~~~l~~~G~iv~~  269 (363)
T 4dvj_A          231 -----EVAAL-GLGAPAFVFSTTHT---DKHAAEIADLIAPQGRFCLI  269 (363)
T ss_dssp             -----HHHTT-CSCCEEEEEECSCH---HHHHHHHHHHSCTTCEEEEC
T ss_pred             -----HHHHh-cCCCceEEEECCCc---hhhHHHHHHHhcCCCEEEEE
Confidence                 11122 24589999976632   23557788899999999875

>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1

Probab=96.59  E-value=0.0068  Score=52.81  Aligned_cols=107  Identities=18%  Similarity=0.337  Sum_probs=67.0

Q ss_pred             hccCCCeEEEEcCcc-hHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccc
Q 026513           67 LIKGGELFLDYGTGS-GILGIAAIKF-GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGV  144 (237)
Q Consensus        67 ~~~~~~~vLDlG~G~-G~~~~~la~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~  144 (237)
                      .+++|.+||-+|+|. |.+++.+++. |..+|+++|.++..++.+++.    |..    .+.....+..           
T Consensus       182 ~~~~g~~VlV~GaG~vG~~aiqlAk~~Ga~~Vi~~~~~~~~~~~a~~l----Ga~----~i~~~~~~~~-----------  242 (398)
T 1kol_A          182 GVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQ----GFE----IADLSLDTPL-----------  242 (398)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT----TCE----EEETTSSSCH-----------
T ss_pred             CCCCCCEEEEECCcHHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHHc----CCc----EEccCCcchH-----------
Confidence            357899999999876 7788888764 666899999999988887642    321    1221111100           


Q ss_pred             ccccccccccCCCCCCceeEEEEeCChHH------------HHHHHHHHhHhcCCCeEEEEeccC
Q 026513          145 VEDLSSHKIRGISQTEKYDVVIANILLNP------------LLQLADHIVSYAKPGAVVGISGIL  197 (237)
Q Consensus       145 ~~~~~~~~~~~~~~~~~fD~I~~n~~~~~------------~~~~l~~~~~~L~~gG~liis~~~  197 (237)
                      .+     .+........+|+|+-......            ....+....+.|+++|.+++.+..
T Consensus       243 ~~-----~v~~~t~g~g~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~G~~  302 (398)
T 1kol_A          243 HE-----QIAALLGEPEVDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIPGLY  302 (398)
T ss_dssp             HH-----HHHHHHSSSCEEEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEECSCC
T ss_pred             HH-----HHHHHhCCCCCCEEEECCCCcccccccccccccchHHHHHHHHHHHhcCCEEEEeccc
Confidence            00     0111112347999997654321            012467778899999999886543

>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1

Probab=96.49  E-value=0.0062  Score=47.51  Aligned_cols=100  Identities=16%  Similarity=0.144  Sum_probs=59.9

Q ss_pred             ccCCCeEEEEcC--cchHHHHHHHH-hCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccc
Q 026513           68 IKGGELFLDYGT--GSGILGIAAIK-FGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGV  144 (237)
Q Consensus        68 ~~~~~~vLDlG~--G~G~~~~~la~-~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~  144 (237)
                      +++|++||..|+  |.|.....+++ .|. +|+++|.+++.++.+++    .+..    .+ +   |..+..       .
T Consensus        36 ~~~g~~vlV~Ga~ggiG~~~~~~~~~~G~-~V~~~~~~~~~~~~~~~----~g~~----~~-~---d~~~~~-------~   95 (198)
T 1pqw_A           36 LSPGERVLIHSATGGVGMAAVSIAKMIGA-RIYTTAGSDAKREMLSR----LGVE----YV-G---DSRSVD-------F   95 (198)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHHT----TCCS----EE-E---ETTCST-------H
T ss_pred             CCCCCEEEEeeCCChHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHH----cCCC----EE-e---eCCcHH-------H
Confidence            568899999995  34555555554 464 79999999987766543    2322    11 1   111100       0


Q ss_pred             ccccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEecc
Q 026513          145 VEDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGI  196 (237)
Q Consensus       145 ~~~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~~  196 (237)
                      ++     .+........+|+++.+...    ..+..+.+.|+++|++++.+.
T Consensus        96 ~~-----~~~~~~~~~~~D~vi~~~g~----~~~~~~~~~l~~~G~~v~~g~  138 (198)
T 1pqw_A           96 AD-----EILELTDGYGVDVVLNSLAG----EAIQRGVQILAPGGRFIELGK  138 (198)
T ss_dssp             HH-----HHHHHTTTCCEEEEEECCCT----HHHHHHHHTEEEEEEEEECSC
T ss_pred             HH-----HHHHHhCCCCCeEEEECCch----HHHHHHHHHhccCCEEEEEcC
Confidence            00     00011113469999987642    346778889999999998654

>3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana}

Probab=96.46  E-value=0.0066  Score=52.52  Aligned_cols=101  Identities=19%  Similarity=0.252  Sum_probs=64.8

Q ss_pred             ccCCCeEEEEcCcc-hHHHHHHHH-hCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEec--cCccccccccccccc
Q 026513           68 IKGGELFLDYGTGS-GILGIAAIK-FGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLV--PDRTFTASMNERVDG  143 (237)
Q Consensus        68 ~~~~~~vLDlG~G~-G~~~~~la~-~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~--~~d~~~~~~~~~~~~  143 (237)
                      +++|.+||-+|+|. |.+++.+++ .|+.+|+++|.++..++.+++    .|...   -+...  ..++.          
T Consensus       191 ~~~g~~VlV~GaG~vG~~a~q~a~~~Ga~~Vi~~~~~~~~~~~a~~----lGa~~---vi~~~~~~~~~~----------  253 (378)
T 3uko_A          191 VEPGSNVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSKKYETAKK----FGVNE---FVNPKDHDKPIQ----------  253 (378)
T ss_dssp             CCTTCCEEEECCSHHHHHHHHHHHHHTCSCEEEECSCTTHHHHHHT----TTCCE---EECGGGCSSCHH----------
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----cCCcE---EEccccCchhHH----------
Confidence            56899999999975 777777776 477789999999988887753    24321   01111  01111          


Q ss_pred             cccccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCC-eEEEEecc
Q 026513          144 VVEDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPG-AVVGISGI  196 (237)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~g-G~liis~~  196 (237)
                        +     .+.... .+.+|+|+-....   ...+..+.+.|++| |++++.+.
T Consensus       254 --~-----~i~~~~-~gg~D~vid~~g~---~~~~~~~~~~l~~g~G~iv~~G~  296 (378)
T 3uko_A          254 --E-----VIVDLT-DGGVDYSFECIGN---VSVMRAALECCHKGWGTSVIVGV  296 (378)
T ss_dssp             --H-----HHHHHT-TSCBSEEEECSCC---HHHHHHHHHTBCTTTCEEEECSC
T ss_pred             --H-----HHHHhc-CCCCCEEEECCCC---HHHHHHHHHHhhccCCEEEEEcc
Confidence              0     011122 2389999976643   23457788899996 99988654

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}

Probab=96.41  E-value=0.0079  Score=51.77  Aligned_cols=101  Identities=13%  Similarity=0.159  Sum_probs=64.9

Q ss_pred             ccCCCeEEEEcCcc-hHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEecc-Cccccccccccccccc
Q 026513           68 IKGGELFLDYGTGS-GILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVP-DRTFTASMNERVDGVV  145 (237)
Q Consensus        68 ~~~~~~vLDlG~G~-G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~-~d~~~~~~~~~~~~~~  145 (237)
                      +++|.+||-+|+|. |..++.+++.-..+|+++|.++..++.+++.    |...    +.-.. .|+.            
T Consensus       187 ~~~g~~VlV~G~G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~l----Ga~~----vi~~~~~~~~------------  246 (363)
T 3uog_A          187 LRAGDRVVVQGTGGVALFGLQIAKATGAEVIVTSSSREKLDRAFAL----GADH----GINRLEEDWV------------  246 (363)
T ss_dssp             CCTTCEEEEESSBHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH----TCSE----EEETTTSCHH------------
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEecCchhHHHHHHc----CCCE----EEcCCcccHH------------
Confidence            56899999999876 7777777765334899999999888877643    4321    21111 1111            


Q ss_pred             cccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEeccC
Q 026513          146 EDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGIL  197 (237)
Q Consensus       146 ~~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~~~  197 (237)
                      +     .+........+|+|+....-    ..+..+.+.|+++|.+++.+..
T Consensus       247 ~-----~v~~~~~g~g~D~vid~~g~----~~~~~~~~~l~~~G~iv~~G~~  289 (363)
T 3uog_A          247 E-----RVYALTGDRGADHILEIAGG----AGLGQSLKAVAPDGRISVIGVL  289 (363)
T ss_dssp             H-----HHHHHHTTCCEEEEEEETTS----SCHHHHHHHEEEEEEEEEECCC
T ss_pred             H-----HHHHHhCCCCceEEEECCCh----HHHHHHHHHhhcCCEEEEEecC
Confidence            0     01112224479999976642    3456677899999999986543

>2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56

Probab=96.40  E-value=0.0088  Score=52.59  Aligned_cols=47  Identities=15%  Similarity=0.061  Sum_probs=41.8

Q ss_pred             cCCCeEEEEcCcchHHHHHHH-Hh-C-CCeEEEEeCCHHHHHHHHHHHHH
Q 026513           69 KGGELFLDYGTGSGILGIAAI-KF-G-AAMSVGADIDPQAIKSAHQNAAL  115 (237)
Q Consensus        69 ~~~~~vLDlG~G~G~~~~~la-~~-~-~~~v~~vD~s~~~i~~a~~~~~~  115 (237)
                      +++..++|+|++.|.++..++ +. + ..+|+++|.+|...+..++|+..
T Consensus       225 ~~~~~viDvGAn~G~~s~~~a~~~~~~~~~V~afEP~p~~~~~L~~n~~~  274 (409)
T 2py6_A          225 SDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRR  274 (409)
T ss_dssp             CSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHH
T ss_pred             CCCCEEEECCCCcCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHh
Confidence            578899999999999999887 44 3 37899999999999999999987

>3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica}

Probab=96.39  E-value=0.0048  Score=52.72  Aligned_cols=74  Identities=14%  Similarity=0.034  Sum_probs=53.6

Q ss_pred             CCCeEEEEcCcchHHHHHHHHhCC--CeE-EEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccc
Q 026513           70 GGELFLDYGTGSGILGIAAIKFGA--AMS-VGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVE  146 (237)
Q Consensus        70 ~~~~vLDlG~G~G~~~~~la~~~~--~~v-~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  146 (237)
                      ...+++|+.||.|.+...+.+.|.  ..+ .++|+++.+++..+.|...         . ++.+|+.+....        
T Consensus         9 ~~~~vidLFaG~GG~~~G~~~aG~~~~~v~~a~e~d~~a~~ty~~N~~~---------~-~~~~DI~~~~~~--------   70 (327)
T 3qv2_A            9 KQVNVIEFFSGIGGLRSSYERSSININATFIPFDINEIANKIYSKNFKE---------E-VQVKNLDSISIK--------   70 (327)
T ss_dssp             CCEEEEEETCTTTHHHHHHHHSSCCCCEEEEEECCCHHHHHHHHHHHCC---------C-CBCCCTTTCCHH--------
T ss_pred             CCCEEEEECCChhHHHHHHHHcCCCceEEEEEEECCHHHHHHHHHHCCC---------C-cccCChhhcCHH--------
Confidence            345899999999999999988874  567 7999999999998888631         1 446666532110        


Q ss_pred             ccccccccCCCCCCceeEEEEeCC
Q 026513          147 DLSSHKIRGISQTEKYDVVIANIL  170 (237)
Q Consensus       147 ~~~~~~~~~~~~~~~fD~I~~n~~  170 (237)
                              .+ +...+|+++..+|
T Consensus        71 --------~i-~~~~~Dil~ggpP   85 (327)
T 3qv2_A           71 --------QI-ESLNCNTWFMSPP   85 (327)
T ss_dssp             --------HH-HHTCCCEEEECCC
T ss_pred             --------Hh-ccCCCCEEEecCC
Confidence                    01 1126899999888

>4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda}

Probab=96.37  E-value=0.0059  Score=52.29  Aligned_cols=73  Identities=16%  Similarity=0.112  Sum_probs=52.7

Q ss_pred             CeEEEEcCcchHHHHHHHHhCC--CeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccccc
Q 026513           72 ELFLDYGTGSGILGIAAIKFGA--AMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDLS  149 (237)
Q Consensus        72 ~~vLDlG~G~G~~~~~la~~~~--~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~  149 (237)
                      .+++|+.||.|.+...+.+.|.  ..+.++|+++.+++..+.|...         ..++.+|+.+....           
T Consensus         4 ~~~idLFaG~GG~~~G~~~aG~~~~~v~a~e~d~~a~~ty~~N~~~---------~~~~~~DI~~~~~~-----------   63 (333)
T 4h0n_A            4 HKILELYSGIGGMHCAWKESGLDGEIVAAVDINTVANSVYKHNFPE---------TNLLNRNIQQLTPQ-----------   63 (333)
T ss_dssp             EEEEEETCTTTHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCTT---------SCEECCCGGGCCHH-----------
T ss_pred             CEEEEECcCccHHHHHHHHcCCCceEEEEEeCCHHHHHHHHHhCCC---------CceeccccccCCHH-----------
Confidence            3799999999999999988876  5688999999999888877531         22456776532111           


Q ss_pred             cccccCCCCCCceeEEEEeCC
Q 026513          150 SHKIRGISQTEKYDVVIANIL  170 (237)
Q Consensus       150 ~~~~~~~~~~~~fD~I~~n~~  170 (237)
                           .+ +...+|+++..+|
T Consensus        64 -----~~-~~~~~D~l~ggpP   78 (333)
T 4h0n_A           64 -----VI-KKWNVDTILMSPP   78 (333)
T ss_dssp             -----HH-HHTTCCEEEECCC
T ss_pred             -----Hh-ccCCCCEEEecCC
Confidence                 01 1136899999887

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*

Probab=96.29  E-value=0.0094  Score=50.71  Aligned_cols=102  Identities=11%  Similarity=0.139  Sum_probs=65.6

Q ss_pred             hccCCCeEEEEcCcc-hHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccc
Q 026513           67 LIKGGELFLDYGTGS-GILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVV  145 (237)
Q Consensus        67 ~~~~~~~vLDlG~G~-G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  145 (237)
                      .+++|.+||-.|+|. |.+++.+++.-..+|+++|.+++.++.+++    .|...   -+.....|..            
T Consensus       163 ~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~----lGa~~---~i~~~~~~~~------------  223 (340)
T 3s2e_A          163 DTRPGQWVVISGIGGLGHVAVQYARAMGLRVAAVDIDDAKLNLARR----LGAEV---AVNARDTDPA------------  223 (340)
T ss_dssp             TCCTTSEEEEECCSTTHHHHHHHHHHTTCEEEEEESCHHHHHHHHH----TTCSE---EEETTTSCHH------------
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHH----cCCCE---EEeCCCcCHH------------
Confidence            357899999999986 888888886533489999999998887764    24321   0111111111            


Q ss_pred             cccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEeccC
Q 026513          146 EDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGIL  197 (237)
Q Consensus       146 ~~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~~~  197 (237)
                      +.     +.. . .+.+|+|+.+...   ...++.+.+.|+++|.+++.+..
T Consensus       224 ~~-----~~~-~-~g~~d~vid~~g~---~~~~~~~~~~l~~~G~iv~~G~~  265 (340)
T 3s2e_A          224 AW-----LQK-E-IGGAHGVLVTAVS---PKAFSQAIGMVRRGGTIALNGLP  265 (340)
T ss_dssp             HH-----HHH-H-HSSEEEEEESSCC---HHHHHHHHHHEEEEEEEEECSCC
T ss_pred             HH-----HHH-h-CCCCCEEEEeCCC---HHHHHHHHHHhccCCEEEEeCCC
Confidence            00     001 1 2379999876532   23557788899999999986543

>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*

Probab=96.27  E-value=0.011  Score=50.88  Aligned_cols=102  Identities=17%  Similarity=0.180  Sum_probs=65.0

Q ss_pred             ccCCCeEEEEcCcc-hHHHHHHHH-hCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEecc--Cccccccccccccc
Q 026513           68 IKGGELFLDYGTGS-GILGIAAIK-FGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVP--DRTFTASMNERVDG  143 (237)
Q Consensus        68 ~~~~~~vLDlG~G~-G~~~~~la~-~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~--~d~~~~~~~~~~~~  143 (237)
                      +++|.+||-+|+|. |.+++.+++ .|..+|+++|.++..++.+++    .|...   -+....  .++.          
T Consensus       189 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~----lGa~~---vi~~~~~~~~~~----------  251 (373)
T 1p0f_A          189 VTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIE----LGATE---CLNPKDYDKPIY----------  251 (373)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHH----TTCSE---EECGGGCSSCHH----------
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHH----cCCcE---EEecccccchHH----------
Confidence            57899999999875 777777776 477689999999988887764    34321   011110  0111          


Q ss_pred             cccccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCC-eEEEEeccC
Q 026513          144 VVEDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPG-AVVGISGIL  197 (237)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~g-G~liis~~~  197 (237)
                        +     .+.... .+.+|+|+-....   ...+....+.|+++ |++++.+..
T Consensus       252 --~-----~i~~~t-~gg~Dvvid~~g~---~~~~~~~~~~l~~~~G~iv~~G~~  295 (373)
T 1p0f_A          252 --E-----VICEKT-NGGVDYAVECAGR---IETMMNALQSTYCGSGVTVVLGLA  295 (373)
T ss_dssp             --H-----HHHHHT-TSCBSEEEECSCC---HHHHHHHHHTBCTTTCEEEECCCC
T ss_pred             --H-----HHHHHh-CCCCCEEEECCCC---HHHHHHHHHHHhcCCCEEEEEccC
Confidence              0     011112 2379999976643   23456778899999 999886543

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1

Probab=96.23  E-value=0.027  Score=48.14  Aligned_cols=101  Identities=19%  Similarity=0.244  Sum_probs=63.3

Q ss_pred             ccCCCeEEEEcCcc-hHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEecc-Ccccccccccccccc
Q 026513           68 IKGGELFLDYGTGS-GILGIAAIKF-GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVP-DRTFTASMNERVDGV  144 (237)
Q Consensus        68 ~~~~~~vLDlG~G~-G~~~~~la~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~-~d~~~~~~~~~~~~~  144 (237)
                      +++|.+||-.|+|. |.+++.+++. |. +|+++|.++..++.+++    .+...   -+.... .+..+          
T Consensus       166 ~~~g~~VlV~GaG~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~~~----lGa~~---~~~~~~~~~~~~----------  227 (352)
T 1e3j_A          166 VQLGTTVLVIGAGPIGLVSVLAAKAYGA-FVVCTARSPRRLEVAKN----CGADV---TLVVDPAKEEES----------  227 (352)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHH----TTCSE---EEECCTTTSCHH----------
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHH----hCCCE---EEcCcccccHHH----------
Confidence            57899999999875 6777777764 55 49999999988887764    24321   011110 11110          


Q ss_pred             ccccccccccCCCC---CCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEecc
Q 026513          145 VEDLSSHKIRGISQ---TEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGI  196 (237)
Q Consensus       145 ~~~~~~~~~~~~~~---~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~~  196 (237)
                        .     +.....   ...+|+|+......   ..+....+.|+++|.+++.+.
T Consensus       228 --~-----i~~~~~~~~g~g~D~vid~~g~~---~~~~~~~~~l~~~G~iv~~G~  272 (352)
T 1e3j_A          228 --S-----IIERIRSAIGDLPNVTIDCSGNE---KCITIGINITRTGGTLMLVGM  272 (352)
T ss_dssp             --H-----HHHHHHHHSSSCCSEEEECSCCH---HHHHHHHHHSCTTCEEEECSC
T ss_pred             --H-----HHHHhccccCCCCCEEEECCCCH---HHHHHHHHHHhcCCEEEEEec
Confidence              0     001111   24699999876432   235667789999999998654

>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis}

Probab=96.18  E-value=0.0099  Score=50.59  Aligned_cols=101  Identities=11%  Similarity=0.074  Sum_probs=63.5

Q ss_pred             ccCCCeEEEEcCcc--hHHHHHHHH-hCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccc
Q 026513           68 IKGGELFLDYGTGS--GILGIAAIK-FGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGV  144 (237)
Q Consensus        68 ~~~~~~vLDlG~G~--G~~~~~la~-~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~  144 (237)
                      +++|.+||-.|+|+  |..+..+++ .|+ +|+++|.++..++.+++.    +...   -+.....+..+          
T Consensus       142 ~~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~l----ga~~---~~~~~~~~~~~----------  203 (340)
T 3gms_A          142 LQRNDVLLVNACGSAIGHLFAQLSQILNF-RLIAVTRNNKHTEELLRL----GAAY---VIDTSTAPLYE----------  203 (340)
T ss_dssp             CCTTCEEEESSTTSHHHHHHHHHHHHHTC-EEEEEESSSTTHHHHHHH----TCSE---EEETTTSCHHH----------
T ss_pred             cCCCCEEEEeCCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHhC----CCcE---EEeCCcccHHH----------
Confidence            57899999999874  667777765 465 799999999888877652    3321   11111111110          


Q ss_pred             ccccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEeccC
Q 026513          145 VEDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGIL  197 (237)
Q Consensus       145 ~~~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~~~  197 (237)
                             .+........+|+|+.+.......    ...+.|+++|.+++.+..
T Consensus       204 -------~~~~~~~~~g~Dvvid~~g~~~~~----~~~~~l~~~G~iv~~G~~  245 (340)
T 3gms_A          204 -------TVMELTNGIGADAAIDSIGGPDGN----ELAFSLRPNGHFLTIGLL  245 (340)
T ss_dssp             -------HHHHHTTTSCEEEEEESSCHHHHH----HHHHTEEEEEEEEECCCT
T ss_pred             -------HHHHHhCCCCCcEEEECCCChhHH----HHHHHhcCCCEEEEEeec
Confidence                   011122245799999877554432    234789999999986543

>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A*

Probab=96.14  E-value=0.016  Score=49.86  Aligned_cols=102  Identities=18%  Similarity=0.227  Sum_probs=64.9

Q ss_pred             ccCCCeEEEEcCcc-hHHHHHHHH-hCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEecc--Cccccccccccccc
Q 026513           68 IKGGELFLDYGTGS-GILGIAAIK-FGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVP--DRTFTASMNERVDG  143 (237)
Q Consensus        68 ~~~~~~vLDlG~G~-G~~~~~la~-~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~--~d~~~~~~~~~~~~  143 (237)
                      +++|.+||-+|+|. |.+++.+++ .|..+|+++|.++..++.+++.    |...   -+....  .++.          
T Consensus       188 ~~~g~~VlV~GaG~vG~~avqla~~~Ga~~Vi~~~~~~~~~~~~~~l----Ga~~---vi~~~~~~~~~~----------  250 (373)
T 2fzw_A          188 LEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEF----GATE---CINPQDFSKPIQ----------  250 (373)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHH----TCSE---EECGGGCSSCHH----------
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHc----CCce---EeccccccccHH----------
Confidence            56889999999875 677777775 4766899999999988887642    4321   011100  0110          


Q ss_pred             cccccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCC-eEEEEeccC
Q 026513          144 VVEDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPG-AVVGISGIL  197 (237)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~g-G~liis~~~  197 (237)
                        +     .+.... .+.+|+|+......   ..+..+.+.|+++ |.+++.+..
T Consensus       251 --~-----~v~~~~-~~g~D~vid~~g~~---~~~~~~~~~l~~~~G~iv~~G~~  294 (373)
T 2fzw_A          251 --E-----VLIEMT-DGGVDYSFECIGNV---KVMRAALEACHKGWGVSVVVGVA  294 (373)
T ss_dssp             --H-----HHHHHT-TSCBSEEEECSCCH---HHHHHHHHTBCTTTCEEEECSCC
T ss_pred             --H-----HHHHHh-CCCCCEEEECCCcH---HHHHHHHHhhccCCcEEEEEecC
Confidence              0     011111 23799999766432   3456778899999 999886543

>4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A*

Probab=96.12  E-value=0.01  Score=50.48  Aligned_cols=102  Identities=17%  Similarity=0.163  Sum_probs=63.2

Q ss_pred             ccCCCeEEEEcCcch-HHHHHHHH-hCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccc
Q 026513           68 IKGGELFLDYGTGSG-ILGIAAIK-FGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVV  145 (237)
Q Consensus        68 ~~~~~~vLDlG~G~G-~~~~~la~-~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  145 (237)
                      .++|.+||-+|+|++ .++..+++ .+..+|+++|.+++-++.+++.    +...   -+.....|..+           
T Consensus       161 ~~~g~~VlV~GaG~~g~~a~~~a~~~~g~~Vi~~~~~~~r~~~~~~~----Ga~~---~i~~~~~~~~~-----------  222 (348)
T 4eez_A          161 VKPGDWQVIFGAGGLGNLAIQYAKNVFGAKVIAVDINQDKLNLAKKI----GADV---TINSGDVNPVD-----------  222 (348)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHHHT----TCSE---EEEC-CCCHHH-----------
T ss_pred             CCCCCEEEEEcCCCccHHHHHHHHHhCCCEEEEEECcHHHhhhhhhc----CCeE---EEeCCCCCHHH-----------
Confidence            578999999999874 45555554 5788899999999877766543    3321   12222222210           


Q ss_pred             cccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEecc
Q 026513          146 EDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGI  196 (237)
Q Consensus       146 ~~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~~  196 (237)
                            .+........+|.++......   ..+......|+++|.+++.+.
T Consensus       223 ------~v~~~t~g~g~d~~~~~~~~~---~~~~~~~~~l~~~G~~v~~g~  264 (348)
T 4eez_A          223 ------EIKKITGGLGVQSAIVCAVAR---IAFEQAVASLKPMGKMVAVAV  264 (348)
T ss_dssp             ------HHHHHTTSSCEEEEEECCSCH---HHHHHHHHTEEEEEEEEECCC
T ss_pred             ------HhhhhcCCCCceEEEEeccCc---chhheeheeecCCceEEEEec
Confidence                  111222344688887655332   345667789999999987544

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}

Probab=96.08  E-value=0.0085  Score=51.18  Aligned_cols=95  Identities=12%  Similarity=0.053  Sum_probs=64.3

Q ss_pred             hccCCCeEEEEcCcc-hHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccc
Q 026513           67 LIKGGELFLDYGTGS-GILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVV  145 (237)
Q Consensus        67 ~~~~~~~vLDlG~G~-G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  145 (237)
                      .+++|.+||-.|+|. |.+++.+++.-..+|+++|.++..++.+++    .|...    +.   .+..            
T Consensus       173 ~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~----lGa~~----v~---~~~~------------  229 (348)
T 3two_A          173 KVTKGTKVGVAGFGGLGSMAVKYAVAMGAEVSVFARNEHKKQDALS----MGVKH----FY---TDPK------------  229 (348)
T ss_dssp             TCCTTCEEEEESCSHHHHHHHHHHHHTTCEEEEECSSSTTHHHHHH----TTCSE----EE---SSGG------------
T ss_pred             CCCCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHh----cCCCe----ec---CCHH------------
Confidence            467899999999876 777777776533489999999988887764    34331    21   2211            


Q ss_pred             cccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEeccCC
Q 026513          146 EDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILS  198 (237)
Q Consensus       146 ~~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~~~~  198 (237)
                               .+  ...+|+|+-.....   ..+....+.|+++|.+++.+...
T Consensus       230 ---------~~--~~~~D~vid~~g~~---~~~~~~~~~l~~~G~iv~~G~~~  268 (348)
T 3two_A          230 ---------QC--KEELDFIISTIPTH---YDLKDYLKLLTYNGDLALVGLPP  268 (348)
T ss_dssp             ---------GC--CSCEEEEEECCCSC---CCHHHHHTTEEEEEEEEECCCCC
T ss_pred             ---------HH--hcCCCEEEECCCcH---HHHHHHHHHHhcCCEEEEECCCC
Confidence                     11  12799999755332   13456778999999999876543

>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1

Probab=96.06  E-value=0.014  Score=50.36  Aligned_cols=102  Identities=13%  Similarity=0.193  Sum_probs=64.6

Q ss_pred             ccCCCeEEEEcCcc-hHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEecc--Cccccccccccccc
Q 026513           68 IKGGELFLDYGTGS-GILGIAAIKF-GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVP--DRTFTASMNERVDG  143 (237)
Q Consensus        68 ~~~~~~vLDlG~G~-G~~~~~la~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~--~d~~~~~~~~~~~~  143 (237)
                      +++|.+||-+|+|. |.+++.+++. |..+|+++|.++..++.+++    .+...   -+....  .++.          
T Consensus       190 ~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~----lGa~~---vi~~~~~~~~~~----------  252 (374)
T 1cdo_A          190 VEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKV----FGATD---FVNPNDHSEPIS----------  252 (374)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH----TTCCE---EECGGGCSSCHH----------
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH----hCCce---EEeccccchhHH----------
Confidence            56889999999875 6777777764 66689999999988887764    24321   011100  0110          


Q ss_pred             cccccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCC-eEEEEeccC
Q 026513          144 VVEDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPG-AVVGISGIL  197 (237)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~g-G~liis~~~  197 (237)
                        +     .+.... .+.+|+|+......   ..+..+.+.|+++ |.+++.+..
T Consensus       253 --~-----~~~~~~-~~g~D~vid~~g~~---~~~~~~~~~l~~~~G~iv~~G~~  296 (374)
T 1cdo_A          253 --Q-----VLSKMT-NGGVDFSLECVGNV---GVMRNALESCLKGWGVSVLVGWT  296 (374)
T ss_dssp             --H-----HHHHHH-TSCBSEEEECSCCH---HHHHHHHHTBCTTTCEEEECSCC
T ss_pred             --H-----HHHHHh-CCCCCEEEECCCCH---HHHHHHHHHhhcCCcEEEEEcCC
Confidence              0     001111 23799999766432   3456778899999 999886543

>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ...

Probab=96.04  E-value=0.017  Score=49.74  Aligned_cols=101  Identities=21%  Similarity=0.217  Sum_probs=63.8

Q ss_pred             ccCCCeEEEEcCcc-hHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEecc--Cccccccccccccc
Q 026513           68 IKGGELFLDYGTGS-GILGIAAIKF-GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVP--DRTFTASMNERVDG  143 (237)
Q Consensus        68 ~~~~~~vLDlG~G~-G~~~~~la~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~--~d~~~~~~~~~~~~  143 (237)
                      +++|.+||-+|+|. |.+++.+++. |..+|+++|.++..++.+++    .|...   -+....  .++.          
T Consensus       189 ~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~----lGa~~---vi~~~~~~~~~~----------  251 (374)
T 2jhf_A          189 VTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKE----VGATE---CVNPQDYKKPIQ----------  251 (374)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH----TTCSE---EECGGGCSSCHH----------
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----hCCce---EecccccchhHH----------
Confidence            56889999999875 6777777764 66689999999988887753    24321   011110  0110          


Q ss_pred             cccccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCC-eEEEEecc
Q 026513          144 VVEDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPG-AVVGISGI  196 (237)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~g-G~liis~~  196 (237)
                        +     .+.... .+.+|+|+......   ..+....+.|+++ |.+++.+.
T Consensus       252 --~-----~~~~~~-~~g~D~vid~~g~~---~~~~~~~~~l~~~~G~iv~~G~  294 (374)
T 2jhf_A          252 --E-----VLTEMS-NGGVDFSFEVIGRL---DTMVTALSCCQEAYGVSVIVGV  294 (374)
T ss_dssp             --H-----HHHHHT-TSCBSEEEECSCCH---HHHHHHHHHBCTTTCEEEECSC
T ss_pred             --H-----HHHHHh-CCCCcEEEECCCCH---HHHHHHHHHhhcCCcEEEEecc
Confidence              0     011111 23799999766432   3456678899999 99988654

>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1

Probab=96.01  E-value=0.0082  Score=52.05  Aligned_cols=106  Identities=15%  Similarity=0.171  Sum_probs=65.0

Q ss_pred             ccCCCeEEEEcCcc-hHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccc-ccccccccccc
Q 026513           68 IKGGELFLDYGTGS-GILGIAAIKF-GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTF-TASMNERVDGV  144 (237)
Q Consensus        68 ~~~~~~vLDlG~G~-G~~~~~la~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~-~~~~~~~~~~~  144 (237)
                      +++|.+||-.|+|. |.+++.+++. |+.+|+++|.+++.++.+++    .|...    +.  ..+.. +.       ++
T Consensus       193 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~----lGa~~----vi--~~~~~~~~-------~~  255 (380)
T 1vj0_A          193 SFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEE----IGADL----TL--NRRETSVE-------ER  255 (380)
T ss_dssp             CCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHH----TTCSE----EE--ETTTSCHH-------HH
T ss_pred             CCCCCEEEEECcCHHHHHHHHHHHHcCCceEEEEcCCHHHHHHHHH----cCCcE----EE--eccccCcc-------hH
Confidence            56789999999774 6777777765 54689999999988887763    34321    21  11100 00       00


Q ss_pred             ccccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEeccCC
Q 026513          145 VEDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILS  198 (237)
Q Consensus       145 ~~~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~~~~  198 (237)
                      .+     .+........+|+|+-.....   ..+....+.|+++|.+++.+...
T Consensus       256 ~~-----~v~~~~~g~g~Dvvid~~g~~---~~~~~~~~~l~~~G~iv~~G~~~  301 (380)
T 1vj0_A          256 RK-----AIMDITHGRGADFILEATGDS---RALLEGSELLRRGGFYSVAGVAV  301 (380)
T ss_dssp             HH-----HHHHHTTTSCEEEEEECSSCT---THHHHHHHHEEEEEEEEECCCCS
T ss_pred             HH-----HHHHHhCCCCCcEEEECCCCH---HHHHHHHHHHhcCCEEEEEecCC
Confidence            00     011122234799999766431   23466778899999999876544

>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A*

Probab=95.96  E-value=0.014  Score=50.34  Aligned_cols=101  Identities=18%  Similarity=0.196  Sum_probs=63.8

Q ss_pred             ccCCCeEEEEcCcc-hHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEecc--Cccccccccccccc
Q 026513           68 IKGGELFLDYGTGS-GILGIAAIKF-GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVP--DRTFTASMNERVDG  143 (237)
Q Consensus        68 ~~~~~~vLDlG~G~-G~~~~~la~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~--~d~~~~~~~~~~~~  143 (237)
                      +++|.+||-+|+|. |.+++.+++. |..+|+++|.++..++.+++    .|...   -+....  .++.          
T Consensus       193 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~----lGa~~---vi~~~~~~~~~~----------  255 (376)
T 1e3i_A          193 VTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKA----LGATD---CLNPRELDKPVQ----------  255 (376)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH----TTCSE---EECGGGCSSCHH----------
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----hCCcE---EEccccccchHH----------
Confidence            56889999999875 6777777764 66689999999988887754    24321   011110  0110          


Q ss_pred             cccccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCC-eEEEEecc
Q 026513          144 VVEDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPG-AVVGISGI  196 (237)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~g-G~liis~~  196 (237)
                        +.     +.... .+.+|+|+-....   ...+..+.+.|+++ |.+++.+.
T Consensus       256 --~~-----v~~~~-~~g~Dvvid~~G~---~~~~~~~~~~l~~~~G~iv~~G~  298 (376)
T 1e3i_A          256 --DV-----ITELT-AGGVDYSLDCAGT---AQTLKAAVDCTVLGWGSCTVVGA  298 (376)
T ss_dssp             --HH-----HHHHH-TSCBSEEEESSCC---HHHHHHHHHTBCTTTCEEEECCC
T ss_pred             --HH-----HHHHh-CCCccEEEECCCC---HHHHHHHHHHhhcCCCEEEEECC
Confidence              00     01111 2379999976543   23456788899999 99987554

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=95.92  E-value=0.24  Score=42.82  Aligned_cols=124  Identities=12%  Similarity=0.042  Sum_probs=81.3

Q ss_pred             HHHHHHHHhhccCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccc
Q 026513           58 KLCLLLLRRLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASM  137 (237)
Q Consensus        58 ~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~  137 (237)
                      ..++..+... ..+.+||.++.+-|.++..++..   .++.+.-|--.-..++.|+..|++....+...  ..  .    
T Consensus        27 ~~ll~~~~~~-~~~~~~~~~~d~~gal~~~~~~~---~~~~~~ds~~~~~~~~~n~~~~~~~~~~~~~~--~~--~----   94 (375)
T 4dcm_A           27 EYLLQQLDDT-EIRGPVLILNDAFGALSCALAEH---KPYSIGDSYISELATRENLRLNGIDESSVKFL--DS--T----   94 (375)
T ss_dssp             HHHHHTTTTC-CCCSCEEEECCSSSHHHHHTGGG---CCEEEESCHHHHHHHHHHHHHTTCCGGGSEEE--ET--T----
T ss_pred             HHHHHhhhhc-cCCCCEEEECCCCCHHHHhhccC---CceEEEhHHHHHHHHHHHHHHcCCCccceEec--cc--c----
Confidence            3444443332 24568999999999999888754   23555446666677889999999875333221  11  0    


Q ss_pred             cccccccccccccccccCCCCCCceeEEEEeCCh--HHHHHHHHHHhHhcCCCeEEEEeccCCCCHHHHHHHHhhc
Q 026513          138 NERVDGVVEDLSSHKIRGISQTEKYDVVIANILL--NPLLQLADHIVSYAKPGAVVGISGILSEQLPHIINRYSEF  211 (237)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~--~~~~~~l~~~~~~L~~gG~liis~~~~~~~~~~~~~~~~~  211 (237)
                                      ..  ....||+|+.-.|.  ..+...+..+...|++|+.+++.+-...-.....+.+.+.
T Consensus        95 ----------------~~--~~~~~~~v~~~lpk~~~~l~~~L~~l~~~l~~~~~i~~~g~~~~~~~~~~~~l~~~  152 (375)
T 4dcm_A           95 ----------------AD--YPQQPGVVLIKVPKTLALLEQQLRALRKVVTSDTRIIAGAKARDIHTSTLELFEKV  152 (375)
T ss_dssp             ----------------SC--CCSSCSEEEEECCSCHHHHHHHHHHHHTTCCTTSEEEEEEEGGGCCHHHHHHHHHH
T ss_pred             ----------------cc--cccCCCEEEEEcCCCHHHHHHHHHHHHhhCCCCCEEEEEecccchHHHHHHHHHhh
Confidence                            01  14689999987763  4456678899999999999988755444445555555544

>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A*

Probab=95.81  E-value=0.027  Score=47.72  Aligned_cols=100  Identities=13%  Similarity=0.174  Sum_probs=62.3

Q ss_pred             ccCCCeEEEEcC-c-chHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccc
Q 026513           68 IKGGELFLDYGT-G-SGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVV  145 (237)
Q Consensus        68 ~~~~~~vLDlG~-G-~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  145 (237)
                      +++|.+||-.|+ | .|..+..+++.-..+|++++.++..++.+++.    +...   -+.....+..+           
T Consensus       146 ~~~g~~vlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~----ga~~---~~~~~~~~~~~-----------  207 (334)
T 3qwb_A          146 VKKGDYVLLFAAAGGVGLILNQLLKMKGAHTIAVASTDEKLKIAKEY----GAEY---LINASKEDILR-----------  207 (334)
T ss_dssp             CCTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHT----TCSE---EEETTTSCHHH-----------
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHc----CCcE---EEeCCCchHHH-----------
Confidence            568899999994 3 46777777765334799999999888877542    3221   01111111110           


Q ss_pred             cccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEec
Q 026513          146 EDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISG  195 (237)
Q Consensus       146 ~~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~  195 (237)
                            .+........+|+|+.+...    ..+..+.+.|+++|.+++.+
T Consensus       208 ------~~~~~~~~~g~D~vid~~g~----~~~~~~~~~l~~~G~iv~~G  247 (334)
T 3qwb_A          208 ------QVLKFTNGKGVDASFDSVGK----DTFEISLAALKRKGVFVSFG  247 (334)
T ss_dssp             ------HHHHHTTTSCEEEEEECCGG----GGHHHHHHHEEEEEEEEECC
T ss_pred             ------HHHHHhCCCCceEEEECCCh----HHHHHHHHHhccCCEEEEEc
Confidence                  01111224579999987643    34567778999999998854

>3me5_A Cytosine-specific methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.75A {Shigella flexneri 2A} PDB: 3lx6_A

Probab=95.79  E-value=0.0069  Score=54.42  Aligned_cols=43  Identities=16%  Similarity=0.210  Sum_probs=38.2

Q ss_pred             CCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHH
Q 026513           71 GELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNA  113 (237)
Q Consensus        71 ~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~  113 (237)
                      ..+++|+.||.|.+...+.+.|...|.++|+++.+++..+.|.
T Consensus        88 ~~~viDLFaG~GGlslG~~~aG~~~v~avE~d~~A~~ty~~N~  130 (482)
T 3me5_A           88 AFRFIDLFAGIGGIRRGFESIGGQCVFTSEWNKHAVRTYKANH  130 (482)
T ss_dssp             SEEEEEESCTTSHHHHHHHTTTEEEEEEECCCHHHHHHHHHHS
T ss_pred             cceEEEecCCccHHHHHHHHCCCEEEEEEeCCHHHHHHHHHhc
Confidence            3589999999999999998888888999999999988888775

>1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A*

Probab=95.77  E-value=0.038  Score=46.72  Aligned_cols=99  Identities=21%  Similarity=0.230  Sum_probs=61.2

Q ss_pred             ccCCCeEEEEcC--cchHHHHHHHH-hCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEecc-Cccccccccccccc
Q 026513           68 IKGGELFLDYGT--GSGILGIAAIK-FGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVP-DRTFTASMNERVDG  143 (237)
Q Consensus        68 ~~~~~~vLDlG~--G~G~~~~~la~-~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~-~d~~~~~~~~~~~~  143 (237)
                      +++|++||..|+  |.|.....+++ .|. +|+++|.++..++.+++.    +...   .+.... .++.         +
T Consensus       143 ~~~g~~vlV~Ga~ggiG~~~~~~~~~~G~-~V~~~~~~~~~~~~~~~~----g~~~---~~d~~~~~~~~---------~  205 (333)
T 1v3u_A          143 VKGGETVLVSAAAGAVGSVVGQIAKLKGC-KVVGAAGSDEKIAYLKQI----GFDA---AFNYKTVNSLE---------E  205 (333)
T ss_dssp             CCSSCEEEEESTTBHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHT----TCSE---EEETTSCSCHH---------H
T ss_pred             CCCCCEEEEecCCCcHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHhc----CCcE---EEecCCHHHHH---------H
Confidence            568899999998  34566666555 455 799999999887776332    3221   111111 1110         0


Q ss_pred             cccccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEecc
Q 026513          144 VVEDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGI  196 (237)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~~  196 (237)
                      .        +.... .+.+|+++.+....    .+....+.|+++|++++.+.
T Consensus       206 ~--------~~~~~-~~~~d~vi~~~g~~----~~~~~~~~l~~~G~~v~~g~  245 (333)
T 1v3u_A          206 A--------LKKAS-PDGYDCYFDNVGGE----FLNTVLSQMKDFGKIAICGA  245 (333)
T ss_dssp             H--------HHHHC-TTCEEEEEESSCHH----HHHHHHTTEEEEEEEEECCC
T ss_pred             H--------HHHHh-CCCCeEEEECCChH----HHHHHHHHHhcCCEEEEEec
Confidence            0        01111 24799999887642    35777889999999988654

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A*

Probab=95.76  E-value=0.026  Score=48.12  Aligned_cols=100  Identities=19%  Similarity=0.230  Sum_probs=62.4

Q ss_pred             CCCeEEEEcCcc-hHHHHHHHH-hCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccc
Q 026513           70 GGELFLDYGTGS-GILGIAAIK-FGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVED  147 (237)
Q Consensus        70 ~~~~vLDlG~G~-G~~~~~la~-~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  147 (237)
                      +|.+||-+|+|. |..++.+++ .|..+|+++|.++..++.+++.    +...   -+.....++.            + 
T Consensus       167 ~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~~----Ga~~---~~~~~~~~~~------------~-  226 (348)
T 2d8a_A          167 SGKSVLITGAGPLGLLGIAVAKASGAYPVIVSEPSDFRRELAKKV----GADY---VINPFEEDVV------------K-  226 (348)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHHHHHHH----TCSE---EECTTTSCHH------------H-
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh----CCCE---EECCCCcCHH------------H-
Confidence            889999999964 666777765 4665899999999888877642    3321   0111111111            0 


Q ss_pred             cccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEecc
Q 026513          148 LSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGI  196 (237)
Q Consensus       148 ~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~~  196 (237)
                          .+........+|+|+.....   ...+..+.+.|+++|.++..+.
T Consensus       227 ----~v~~~~~g~g~D~vid~~g~---~~~~~~~~~~l~~~G~iv~~g~  268 (348)
T 2d8a_A          227 ----EVMDITDGNGVDVFLEFSGA---PKALEQGLQAVTPAGRVSLLGL  268 (348)
T ss_dssp             ----HHHHHTTTSCEEEEEECSCC---HHHHHHHHHHEEEEEEEEECCC
T ss_pred             ----HHHHHcCCCCCCEEEECCCC---HHHHHHHHHHHhcCCEEEEEcc
Confidence                01111223479999987653   2345667788999999988654

>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A*

Probab=95.74  E-value=0.026  Score=47.66  Aligned_cols=100  Identities=19%  Similarity=0.186  Sum_probs=63.5

Q ss_pred             ccCCCeEEEEc-Cc-chHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccc
Q 026513           68 IKGGELFLDYG-TG-SGILGIAAIKF-GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGV  144 (237)
Q Consensus        68 ~~~~~~vLDlG-~G-~G~~~~~la~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~  144 (237)
                      +++|++||-.| +| .|..+..+++. |. +|++++.++..++.+++.    +...   -+.....+..           
T Consensus       138 ~~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~~----Ga~~---~~~~~~~~~~-----------  198 (325)
T 3jyn_A          138 VKPGEIILFHAAAGGVGSLACQWAKALGA-KLIGTVSSPEKAAHAKAL----GAWE---TIDYSHEDVA-----------  198 (325)
T ss_dssp             CCTTCEEEESSTTSHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHHHH----TCSE---EEETTTSCHH-----------
T ss_pred             CCCCCEEEEEcCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHc----CCCE---EEeCCCccHH-----------
Confidence            56799999999 34 47777777754 65 799999999988877642    3221   1111111111           


Q ss_pred             ccccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEecc
Q 026513          145 VEDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGI  196 (237)
Q Consensus       145 ~~~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~~  196 (237)
                       +     .+........+|+|+.+...    ..+....+.|+++|.+++.+.
T Consensus       199 -~-----~~~~~~~~~g~Dvvid~~g~----~~~~~~~~~l~~~G~iv~~g~  240 (325)
T 3jyn_A          199 -K-----RVLELTDGKKCPVVYDGVGQ----DTWLTSLDSVAPRGLVVSFGN  240 (325)
T ss_dssp             -H-----HHHHHTTTCCEEEEEESSCG----GGHHHHHTTEEEEEEEEECCC
T ss_pred             -H-----HHHHHhCCCCceEEEECCCh----HHHHHHHHHhcCCCEEEEEec
Confidence             0     01112224579999987654    345667889999999998654

>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A

Probab=95.67  E-value=0.01  Score=49.74  Aligned_cols=52  Identities=12%  Similarity=0.038  Sum_probs=38.0

Q ss_pred             EEeccCccccccccccccccccccccccccCCCCCCceeEEEEeCChH--------------------H---HHHHHHHH
Q 026513          125 LHLVPDRTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLN--------------------P---LLQLADHI  181 (237)
Q Consensus       125 v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~~--------------------~---~~~~l~~~  181 (237)
                      ..++++|..+.                 + ...++++||+|++|||+.                    .   +..++..+
T Consensus        22 ~~i~~gD~~~~-----------------l-~~l~~~s~DlIvtdPPY~~~~~y~~~~~~~~~~~~~~~~l~~l~~~~~~~   83 (297)
T 2zig_A           22 HRLHVGDAREV-----------------L-ASFPEASVHLVVTSPPYWTLKRYEDTPGQLGHIEDYEAFLDELDRVWREV   83 (297)
T ss_dssp             EEEEESCHHHH-----------------H-TTSCTTCEEEEEECCCCCCCC-------CCHHHHHHHHHHHHHHHHHHHH
T ss_pred             CEEEECcHHHH-----------------H-hhCCCCceeEEEECCCCCCccccCCChhhhcccccHHHHHHHHHHHHHHH
Confidence            67889998731                 1 112357999999999962                    1   23467789


Q ss_pred             hHhcCCCeEEEEe
Q 026513          182 VSYAKPGAVVGIS  194 (237)
Q Consensus       182 ~~~L~~gG~liis  194 (237)
                      .++|+|||.+++.
T Consensus        84 ~rvLk~~G~l~i~   96 (297)
T 2zig_A           84 FRLLVPGGRLVIV   96 (297)
T ss_dssp             HHHEEEEEEEEEE
T ss_pred             HHHcCCCcEEEEE
Confidence            9999999999885

>3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus}

Probab=95.64  E-value=0.034  Score=47.34  Aligned_cols=95  Identities=14%  Similarity=0.149  Sum_probs=60.0

Q ss_pred             CCCeEEEE-cCcc-hHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccc
Q 026513           70 GGELFLDY-GTGS-GILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVED  147 (237)
Q Consensus        70 ~~~~vLDl-G~G~-G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  147 (237)
                      +|.+||-. |+|. |..++.+++.-..+|++++.++..++.+++.    +..    .+.-...++.            +.
T Consensus       150 ~g~~VlV~gg~G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~l----Ga~----~vi~~~~~~~------------~~  209 (346)
T 3fbg_A          150 EGKTLLIINGAGGVGSIATQIAKAYGLRVITTASRNETIEWTKKM----GAD----IVLNHKESLL------------NQ  209 (346)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEECCSHHHHHHHHHH----TCS----EEECTTSCHH------------HH
T ss_pred             CCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhc----CCc----EEEECCccHH------------HH
Confidence            78999999 4553 7777777765334899999999888887752    332    1211111111            00


Q ss_pred             cccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEE
Q 026513          148 LSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGI  193 (237)
Q Consensus       148 ~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~lii  193 (237)
                           +... ....+|+|+.....   ...+..+.+.|+++|.++.
T Consensus       210 -----~~~~-~~~g~Dvv~d~~g~---~~~~~~~~~~l~~~G~iv~  246 (346)
T 3fbg_A          210 -----FKTQ-GIELVDYVFCTFNT---DMYYDDMIQLVKPRGHIAT  246 (346)
T ss_dssp             -----HHHH-TCCCEEEEEESSCH---HHHHHHHHHHEEEEEEEEE
T ss_pred             -----HHHh-CCCCccEEEECCCc---hHHHHHHHHHhccCCEEEE
Confidence                 1111 24579999976642   2345677889999999975

>2uyo_A Hypothetical protein ML2640; putative methyltransferase, transferas; 1.7A {Mycobacterium leprae} SCOP: c.66.1.57 PDB: 2ckd_A 2uyq_A*

Probab=95.63  E-value=0.17  Score=42.74  Aligned_cols=127  Identities=12%  Similarity=-0.004  Sum_probs=79.4

Q ss_pred             HHHHHHHhhccC-CCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccc
Q 026513           59 LCLLLLRRLIKG-GELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASM  137 (237)
Q Consensus        59 ~~~~~l~~~~~~-~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~  137 (237)
                      .+.+.+...+.. -..|+++|||-=+....+......+++=+| .|.+++..++.+...+... .-+..++.+|+.+ . 
T Consensus        90 ~~d~~v~~~~~~g~~QvV~LGaGlDTra~Rl~~~~~~~v~evD-~P~vi~~k~~lL~~~~~~~-~~~~~~v~~Dl~d-~-  165 (310)
T 2uyo_A           90 FFDTYFNNAVIDGIRQFVILASGLDSRAYRLDWPTGTTVYEID-QPKVLAYKSTTLAEHGVTP-TADRREVPIDLRQ-D-  165 (310)
T ss_dssp             HHHHHHHHHHHTTCCEEEEETCTTCCHHHHSCCCTTCEEEEEE-CHHHHHHHHHHHHHTTCCC-SSEEEEEECCTTS-C-
T ss_pred             HHHHHHHHHHHhCCCeEEEeCCCCCchhhhccCCCCcEEEEcC-CHHHHHHHHHHHHhcCCCC-CCCeEEEecchHh-h-
Confidence            344444443332 357999999988776555432236788999 6999999888887544321 1247788888874 1 


Q ss_pred             cccccccccccccccccCCCCCCceeEEEEeCChHH-----HHHHHHHHhHhcCCCeEEEEeccCCC
Q 026513          138 NERVDGVVEDLSSHKIRGISQTEKYDVVIANILLNP-----LLQLADHIVSYAKPGAVVGISGILSE  199 (237)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~~~-----~~~~l~~~~~~L~~gG~liis~~~~~  199 (237)
                            +.+.+    ..........=++++..++.+     ...+++.+...+.||+.+++..+...
T Consensus       166 ------~~~~l----~~~g~d~~~Pt~~i~Egvl~Yl~~~~~~~ll~~l~~~~~~gs~l~~d~~~~~  222 (310)
T 2uyo_A          166 ------WPPAL----RSAGFDPSARTAWLAEGLLMYLPATAQDGLFTEIGGLSAVGSRIAVETSPLH  222 (310)
T ss_dssp             ------HHHHH----HHTTCCTTSCEEEEECSCGGGSCHHHHHHHHHHHHHTCCTTCEEEEECCCTT
T ss_pred             ------HHHHH----HhccCCCCCCEEEEEechHhhCCHHHHHHHHHHHHHhCCCCeEEEEEecCCC
Confidence                  21111    011111234566667666543     35678888888899999999866543

>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A*

Probab=95.63  E-value=0.0051  Score=65.43  Aligned_cols=101  Identities=14%  Similarity=0.089  Sum_probs=51.6

Q ss_pred             cCCCeEEEEcCcchHHHHHHHH-hC-----CCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccc
Q 026513           69 KGGELFLDYGTGSGILGIAAIK-FG-----AAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVD  142 (237)
Q Consensus        69 ~~~~~vLDlG~G~G~~~~~la~-~~-----~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~  142 (237)
                      .+..+|||+|.|+|..+..+.. .+     ..+++.+|+|+...+.|++.+....       +..-.-|..++       
T Consensus      1239 ~~~~~ilEigagtg~~t~~il~~l~~~~~~~~~yt~td~s~~~~~~a~~~f~~~d-------i~~~~~d~~~~------- 1304 (2512)
T 2vz8_A         1239 SPKMKVVEVLAGDGQLYSRIPALLNTQPVMDLDYTATDRNPQALEAAQAKLEQLH-------VTQGQWDPANP------- 1304 (2512)
T ss_dssp             SSEEEEEEESCSSSCCTTTHHHHTTTSSSCEEEEEEECSSSSSTTTTTTTHHHHT-------EEEECCCSSCC-------
T ss_pred             CCCceEEEECCCccHHHHHHHHhhcccCcccceEEEecCChHHHHHHHHHhhhcc-------ccccccccccc-------
Confidence            4567999999999976554432 22     3468999999988887777765422       22111111100       


Q ss_pred             ccccccccccccCCCCCCceeEEEEeCChHH---HHHHHHHHhHhcCCCeEEEEec
Q 026513          143 GVVEDLSSHKIRGISQTEKYDVVIANILLNP---LLQLADHIVSYAKPGAVVGISG  195 (237)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~fD~I~~n~~~~~---~~~~l~~~~~~L~~gG~liis~  195 (237)
                                  .......||+|++..+++.   ....+.++.++|+|||++++..
T Consensus      1305 ------------~~~~~~~ydlvia~~vl~~t~~~~~~l~~~~~lL~p~G~l~~~e 1348 (2512)
T 2vz8_A         1305 ------------APGSLGKADLLVCNCALATLGDPAVAVGNMAATLKEGGFLLLHT 1348 (2512)
T ss_dssp             ------------CC-----CCEEEEECC--------------------CCEEEEEE
T ss_pred             ------------ccCCCCceeEEEEcccccccccHHHHHHHHHHhcCCCcEEEEEe
Confidence                        0001357999999887764   3456888999999999998854

>3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A*

Probab=95.63  E-value=0.1  Score=43.97  Aligned_cols=139  Identities=11%  Similarity=-0.026  Sum_probs=78.8

Q ss_pred             CCeEEEEcCcchHHHHHHH----Hh-CCC--eEEEEeCCH--------H-HHHHHHHHHHHc-CCCCCcceEEeccCccc
Q 026513           71 GELFLDYGTGSGILGIAAI----KF-GAA--MSVGADIDP--------Q-AIKSAHQNAALN-NIGPKKMKLHLVPDRTF  133 (237)
Q Consensus        71 ~~~vLDlG~G~G~~~~~la----~~-~~~--~v~~vD~s~--------~-~i~~a~~~~~~~-~~~~~~~~v~~~~~d~~  133 (237)
                      .-+|||+|-|+|.......    +. +..  +++.+|..+        . ..+..+...... ......+...+..+|+.
T Consensus        97 ~~~IlE~GFGTGLNfl~t~~~~~~~~~~~~L~~iS~Ek~pl~~~~~~~~~~~~l~~~l~~~~p~~~~~~v~L~l~~GDa~  176 (308)
T 3vyw_A           97 VIRILDVGFGLGYNLAVALKHLWEVNPKLRVEIISFEKELLKEFPILPEPYREIHEFLLERVPEYEGERLSLKVLLGDAR  176 (308)
T ss_dssp             EEEEEEECCTTSHHHHHHHHHHHHHCTTCEEEEEEEESSCCSCCCCCCTTSHHHHHHHHHHCSEEECSSEEEEEEESCHH
T ss_pred             CcEEEEeCCCccHHHHHHHHHHHHhCCCcceEEEeecHHHHHhhHhchHhHHHHHHHHHHhCccccCCcEEEEEEechHH
Confidence            3579999999997654322    22 233  356666522        1 112222222221 11223445677778875


Q ss_pred             cccccccccccccccccccccCCCCCCceeEEEEeCCh------HHHHHHHHHHhHhcCCCeEEEEeccCCCCHHHHHHH
Q 026513          134 TASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILL------NPLLQLADHIVSYAKPGAVVGISGILSEQLPHIINR  207 (237)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~------~~~~~~l~~~~~~L~~gG~liis~~~~~~~~~~~~~  207 (237)
                      +.                 +..+ .+.+||+|+.++.-      -+..++++.+.++++|||.+..-    +....+...
T Consensus       177 ~~-----------------l~~l-~~~~~Da~flDgFsP~kNPeLWs~e~f~~l~~~~~pgg~laTY----taag~VRR~  234 (308)
T 3vyw_A          177 KR-----------------IKEV-ENFKADAVFHDAFSPYKNPELWTLDFLSLIKERIDEKGYWVSY----SSSLSVRKS  234 (308)
T ss_dssp             HH-----------------GGGC-CSCCEEEEEECCSCTTTSGGGGSHHHHHHHHTTEEEEEEEEES----CCCHHHHHH
T ss_pred             HH-----------------Hhhh-cccceeEEEeCCCCcccCcccCCHHHHHHHHHHhCCCcEEEEE----eCcHHHHHH
Confidence            31                 1122 23579999998731      22357899999999999998752    223455555


Q ss_pred             Hhh-ccccceeeec-CCEEEEEEEEc
Q 026513          208 YSE-FLEDILVSEM-DDWTCVSGKKK  231 (237)
Q Consensus       208 ~~~-~~~~~~~~~~-~~w~~~~~~~~  231 (237)
                      +.. +|...++... +.+..+.+..+
T Consensus       235 L~~aGF~V~k~~G~g~KReml~A~~~  260 (308)
T 3vyw_A          235 LLTLGFKVGSSREIGRKRKGTVASLK  260 (308)
T ss_dssp             HHHTTCEEEEEECC---CEEEEEESS
T ss_pred             HHHCCCEEEecCCCCCCCceeEEecC
Confidence            543 4877666543 44777777654

>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus}

Probab=95.58  E-value=0.032  Score=47.47  Aligned_cols=101  Identities=13%  Similarity=0.181  Sum_probs=63.0

Q ss_pred             ccCCCeEEEEcC--cchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccc
Q 026513           68 IKGGELFLDYGT--GSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVV  145 (237)
Q Consensus        68 ~~~~~~vLDlG~--G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  145 (237)
                      +++|.+||-.|+  |.|..+..+++....+|+++|.++..++.+++    .+...   -+.....++.            
T Consensus       164 ~~~g~~vlV~Gasg~iG~~~~~~a~~~G~~Vi~~~~~~~~~~~~~~----~ga~~---~~d~~~~~~~------------  224 (343)
T 2eih_A          164 VRPGDDVLVMAAGSGVSVAAIQIAKLFGARVIATAGSEDKLRRAKA----LGADE---TVNYTHPDWP------------  224 (343)
T ss_dssp             CCTTCEEEECSTTSTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHH----HTCSE---EEETTSTTHH------------
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHh----cCCCE---EEcCCcccHH------------
Confidence            567899999998  45777777775433479999999988887764    23221   0111111110            


Q ss_pred             cccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEecc
Q 026513          146 EDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGI  196 (237)
Q Consensus       146 ~~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~~  196 (237)
                      +     .+........+|+|+.+..-    ..+..+.+.|+++|.+++.+.
T Consensus       225 ~-----~~~~~~~~~~~d~vi~~~g~----~~~~~~~~~l~~~G~~v~~g~  266 (343)
T 2eih_A          225 K-----EVRRLTGGKGADKVVDHTGA----LYFEGVIKATANGGRIAIAGA  266 (343)
T ss_dssp             H-----HHHHHTTTTCEEEEEESSCS----SSHHHHHHHEEEEEEEEESSC
T ss_pred             H-----HHHHHhCCCCceEEEECCCH----HHHHHHHHhhccCCEEEEEec
Confidence            0     01111123479999987652    345667788999999988654

>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus}

Probab=95.57  E-value=0.025  Score=48.22  Aligned_cols=100  Identities=17%  Similarity=0.116  Sum_probs=62.3

Q ss_pred             ccCCCeEEEEcC--cchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccc
Q 026513           68 IKGGELFLDYGT--GSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVV  145 (237)
Q Consensus        68 ~~~~~~vLDlG~--G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  145 (237)
                      +++|.+||-.|+  |.|..+..+++.-..+|++++.++..++.+++.    +..    .+.-...++.+           
T Consensus       157 ~~~g~~VlV~Gasg~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~----ga~----~v~~~~~~~~~-----------  217 (342)
T 4eye_A          157 LRAGETVLVLGAAGGIGTAAIQIAKGMGAKVIAVVNRTAATEFVKSV----GAD----IVLPLEEGWAK-----------  217 (342)
T ss_dssp             CCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHH----TCS----EEEESSTTHHH-----------
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhc----CCc----EEecCchhHHH-----------
Confidence            568999999997  347777777765334899999999888877653    332    12111111110           


Q ss_pred             cccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEecc
Q 026513          146 EDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGI  196 (237)
Q Consensus       146 ~~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~~  196 (237)
                            .+........+|+|+.+....    .+..+.+.|+++|.+++.+.
T Consensus       218 ------~v~~~~~~~g~Dvvid~~g~~----~~~~~~~~l~~~G~iv~~G~  258 (342)
T 4eye_A          218 ------AVREATGGAGVDMVVDPIGGP----AFDDAVRTLASEGRLLVVGF  258 (342)
T ss_dssp             ------HHHHHTTTSCEEEEEESCC------CHHHHHHTEEEEEEEEEC--
T ss_pred             ------HHHHHhCCCCceEEEECCchh----HHHHHHHhhcCCCEEEEEEc
Confidence                  011122234799999766532    45667889999999998654

>4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A*

Probab=95.57  E-value=0.021  Score=48.31  Aligned_cols=102  Identities=13%  Similarity=0.125  Sum_probs=63.6

Q ss_pred             hccCCCeEEEEcC--cchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccc
Q 026513           67 LIKGGELFLDYGT--GSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGV  144 (237)
Q Consensus        67 ~~~~~~~vLDlG~--G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~  144 (237)
                      .+++|++||-.|+  |.|..+..+++....+|++++.++..++.+.+.   .+...   -+.....+..           
T Consensus       146 ~~~~g~~vlI~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~---~g~~~---~~~~~~~~~~-----------  208 (336)
T 4b7c_A          146 QPKNGETVVISGAAGAVGSVAGQIARLKGCRVVGIAGGAEKCRFLVEE---LGFDG---AIDYKNEDLA-----------  208 (336)
T ss_dssp             CCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHT---TCCSE---EEETTTSCHH-----------
T ss_pred             CCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH---cCCCE---EEECCCHHHH-----------
Confidence            3678999999998  346777776654334899999999887766322   23321   0111111111           


Q ss_pred             ccccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEecc
Q 026513          145 VEDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGI  196 (237)
Q Consensus       145 ~~~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~~  196 (237)
                       +.     +.... .+.+|+++.+...    ..+..+.+.|+++|.+++.+.
T Consensus       209 -~~-----~~~~~-~~~~d~vi~~~g~----~~~~~~~~~l~~~G~iv~~G~  249 (336)
T 4b7c_A          209 -AG-----LKREC-PKGIDVFFDNVGG----EILDTVLTRIAFKARIVLCGA  249 (336)
T ss_dssp             -HH-----HHHHC-TTCEEEEEESSCH----HHHHHHHTTEEEEEEEEECCC
T ss_pred             -HH-----HHHhc-CCCceEEEECCCc----chHHHHHHHHhhCCEEEEEee
Confidence             00     01111 3579999987753    356778889999999998654

>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=95.53  E-value=0.015  Score=50.27  Aligned_cols=99  Identities=13%  Similarity=0.134  Sum_probs=63.0

Q ss_pred             hccCCCeEEEEcCcc-hHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccc
Q 026513           67 LIKGGELFLDYGTGS-GILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVV  145 (237)
Q Consensus        67 ~~~~~~~vLDlG~G~-G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  145 (237)
                      .+++|.+||-+|+|. |.+++.+++.-..+|+++|.++..++.+++    .|...   -+.....+.             
T Consensus       191 ~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~Vi~~~~~~~~~~~a~~----lGa~~---vi~~~~~~~-------------  250 (369)
T 1uuf_A          191 QAGPGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAAKA----LGADE---VVNSRNADE-------------  250 (369)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHH----HTCSE---EEETTCHHH-------------
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH----cCCcE---EeccccHHH-------------
Confidence            357899999999975 777777776533459999999998887764    24321   011100010             


Q ss_pred             cccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEeccC
Q 026513          146 EDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGIL  197 (237)
Q Consensus       146 ~~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~~~  197 (237)
                             ....  ...+|+|+......   ..+....+.|+++|.++..+..
T Consensus       251 -------~~~~--~~g~Dvvid~~g~~---~~~~~~~~~l~~~G~iv~~G~~  290 (369)
T 1uuf_A          251 -------MAAH--LKSFDFILNTVAAP---HNLDDFTTLLKRDGTMTLVGAP  290 (369)
T ss_dssp             -------HHTT--TTCEEEEEECCSSC---CCHHHHHTTEEEEEEEEECCCC
T ss_pred             -------HHHh--hcCCCEEEECCCCH---HHHHHHHHHhccCCEEEEeccC
Confidence                   0112  14799999755322   1245577889999999886554

>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus}

Probab=95.50  E-value=0.017  Score=49.14  Aligned_cols=98  Identities=10%  Similarity=0.096  Sum_probs=61.9

Q ss_pred             CCCeEEEEcCcc-hHHHHHHHHhC--CCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccc
Q 026513           70 GGELFLDYGTGS-GILGIAAIKFG--AAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVE  146 (237)
Q Consensus        70 ~~~~vLDlG~G~-G~~~~~la~~~--~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  146 (237)
                      +|.+||-+|+|. |.+++.+++.-  ..+|+++|.++..++.+++.    |...    +  +  |..+.      .++++
T Consensus       170 ~g~~VlV~GaG~vG~~aiqlak~~~~Ga~Vi~~~~~~~~~~~~~~l----Ga~~----v--i--~~~~~------~~~~~  231 (344)
T 2h6e_A          170 AEPVVIVNGIGGLAVYTIQILKALMKNITIVGISRSKKHRDFALEL----GADY----V--S--EMKDA------ESLIN  231 (344)
T ss_dssp             SSCEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHH----TCSE----E--E--CHHHH------HHHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHHh----CCCE----E--e--ccccc------hHHHH
Confidence            899999999975 67777777532  34699999999988877652    4321    1  1  11000      00010


Q ss_pred             ccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEecc
Q 026513          147 DLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGI  196 (237)
Q Consensus       147 ~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~~  196 (237)
                              .......+|+|+......   ..+..+.+.|+++|.+++.+.
T Consensus       232 --------~~~~g~g~D~vid~~g~~---~~~~~~~~~l~~~G~iv~~g~  270 (344)
T 2h6e_A          232 --------KLTDGLGASIAIDLVGTE---ETTYNLGKLLAQEGAIILVGM  270 (344)
T ss_dssp             --------HHHTTCCEEEEEESSCCH---HHHHHHHHHEEEEEEEEECCC
T ss_pred             --------HhhcCCCccEEEECCCCh---HHHHHHHHHhhcCCEEEEeCC
Confidence                    111134799999866433   245667888999999988544

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=95.48  E-value=0.13  Score=37.71  Aligned_cols=95  Identities=13%  Similarity=0.005  Sum_probs=57.9

Q ss_pred             CeEEEEcCcc-hHH-HHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccccc
Q 026513           72 ELFLDYGTGS-GIL-GIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDLS  149 (237)
Q Consensus        72 ~~vLDlG~G~-G~~-~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~  149 (237)
                      .+|+-+|+|. |.. +..|...| ..|+++|.+++.++.+++    .+       +.++.+|..+...-           
T Consensus         8 ~~viIiG~G~~G~~la~~L~~~g-~~v~vid~~~~~~~~~~~----~g-------~~~i~gd~~~~~~l-----------   64 (140)
T 3fwz_A            8 NHALLVGYGRVGSLLGEKLLASD-IPLVVIETSRTRVDELRE----RG-------VRAVLGNAANEEIM-----------   64 (140)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTT-CCEEEEESCHHHHHHHHH----TT-------CEEEESCTTSHHHH-----------
T ss_pred             CCEEEECcCHHHHHHHHHHHHCC-CCEEEEECCHHHHHHHHH----cC-------CCEEECCCCCHHHH-----------
Confidence            4799999875 433 23344444 469999999998877653    23       44667776532110           


Q ss_pred             cccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEe
Q 026513          150 SHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGIS  194 (237)
Q Consensus       150 ~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis  194 (237)
                          ... .-..+|++++..+-......+....+.+.|+..++..
T Consensus        65 ----~~a-~i~~ad~vi~~~~~~~~n~~~~~~a~~~~~~~~iiar  104 (140)
T 3fwz_A           65 ----QLA-HLECAKWLILTIPNGYEAGEIVASARAKNPDIEIIAR  104 (140)
T ss_dssp             ----HHT-TGGGCSEEEECCSCHHHHHHHHHHHHHHCSSSEEEEE
T ss_pred             ----Hhc-CcccCCEEEEECCChHHHHHHHHHHHHHCCCCeEEEE
Confidence                011 1247899998766544433344455667788877764

>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=95.47  E-value=0.032  Score=47.07  Aligned_cols=100  Identities=20%  Similarity=0.195  Sum_probs=61.5

Q ss_pred             ccCCCeEEEEcC--cchHHHHHHHH-hCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccc
Q 026513           68 IKGGELFLDYGT--GSGILGIAAIK-FGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGV  144 (237)
Q Consensus        68 ~~~~~~vLDlG~--G~G~~~~~la~-~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~  144 (237)
                      +++|++||-.|+  |.|.....+++ .|. +|+++|.++..++.+++.    +...   -+.....+..           
T Consensus       138 ~~~g~~vlV~Ga~ggiG~~~~~~a~~~G~-~V~~~~~~~~~~~~~~~~----g~~~---~~~~~~~~~~-----------  198 (327)
T 1qor_A          138 IKPDEQFLFHAAAGGVGLIACQWAKALGA-KLIGTVGTAQKAQSALKA----GAWQ---VINYREEDLV-----------  198 (327)
T ss_dssp             CCTTCEEEESSTTBHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHHHH----TCSE---EEETTTSCHH-----------
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHc----CCCE---EEECCCccHH-----------
Confidence            567899999994  34666666554 565 799999999888777652    3221   0111111110           


Q ss_pred             ccccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEecc
Q 026513          145 VEDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGI  196 (237)
Q Consensus       145 ~~~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~~  196 (237)
                       +.     +........+|+++.+..    ...++.+.+.|+++|++++.+.
T Consensus       199 -~~-----~~~~~~~~~~D~vi~~~g----~~~~~~~~~~l~~~G~iv~~g~  240 (327)
T 1qor_A          199 -ER-----LKEITGGKKVRVVYDSVG----RDTWERSLDCLQRRGLMVSFGN  240 (327)
T ss_dssp             -HH-----HHHHTTTCCEEEEEECSC----GGGHHHHHHTEEEEEEEEECCC
T ss_pred             -HH-----HHHHhCCCCceEEEECCc----hHHHHHHHHHhcCCCEEEEEec
Confidence             00     011111347999998875    2345777889999999988654

>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae}

Probab=95.41  E-value=0.026  Score=48.14  Aligned_cols=101  Identities=14%  Similarity=0.124  Sum_probs=62.3

Q ss_pred             ccCCCeEEEEcC--cchHHHHHHHH-hCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEec-cCccccccccccccc
Q 026513           68 IKGGELFLDYGT--GSGILGIAAIK-FGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLV-PDRTFTASMNERVDG  143 (237)
Q Consensus        68 ~~~~~~vLDlG~--G~G~~~~~la~-~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~-~~d~~~~~~~~~~~~  143 (237)
                      +++|++||..|+  |.|.....+++ .|. +|+++|.++..++.+++    .+...   .+... ..++.         +
T Consensus       167 ~~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga-~V~~~~~~~~~~~~~~~----~g~~~---~~d~~~~~~~~---------~  229 (347)
T 2hcy_A          167 LMAGHWVAISGAAGGLGSLAVQYAKAMGY-RVLGIDGGEGKEELFRS----IGGEV---FIDFTKEKDIV---------G  229 (347)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECSTTHHHHHHH----TTCCE---EEETTTCSCHH---------H
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCC-cEEEEcCCHHHHHHHHH----cCCce---EEecCccHhHH---------H
Confidence            578999999998  35666666665 454 79999999887776654    23221   11111 01110         0


Q ss_pred             cccccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEeccC
Q 026513          144 VVEDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGIL  197 (237)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~~~  197 (237)
                      .        +...... .+|+++.+...   ...++.+.+.|+++|++++.+..
T Consensus       230 ~--------~~~~~~~-~~D~vi~~~g~---~~~~~~~~~~l~~~G~iv~~g~~  271 (347)
T 2hcy_A          230 A--------VLKATDG-GAHGVINVSVS---EAAIEASTRYVRANGTTVLVGMP  271 (347)
T ss_dssp             H--------HHHHHTS-CEEEEEECSSC---HHHHHHHTTSEEEEEEEEECCCC
T ss_pred             H--------HHHHhCC-CCCEEEECCCc---HHHHHHHHHHHhcCCEEEEEeCC
Confidence            0        0111112 79999988753   23567788899999999886543

>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A

Probab=95.41  E-value=0.036  Score=47.09  Aligned_cols=101  Identities=14%  Similarity=0.155  Sum_probs=62.7

Q ss_pred             hccCCCeEEEEcCcc-hHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccc
Q 026513           67 LIKGGELFLDYGTGS-GILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVV  145 (237)
Q Consensus        67 ~~~~~~~vLDlG~G~-G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  145 (237)
                      .+++|.+||-+|+|. |..++.+++.-..+|+++|.++..++.+++    .+...   -+.....|+.            
T Consensus       161 ~~~~g~~VlV~GaG~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~----lGa~~---~~d~~~~~~~------------  221 (339)
T 1rjw_A          161 GAKPGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAKE----LGADL---VVNPLKEDAA------------  221 (339)
T ss_dssp             TCCTTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHH----TTCSE---EECTTTSCHH------------
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH----CCCCE---EecCCCccHH------------
Confidence            357899999999964 666777665423489999999988887753    24321   0111111110            


Q ss_pred             cccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEecc
Q 026513          146 EDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGI  196 (237)
Q Consensus       146 ~~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~~  196 (237)
                      +.     +....  +.+|+|+.+....   ..+....+.|+++|.+++.+.
T Consensus       222 ~~-----~~~~~--~~~d~vid~~g~~---~~~~~~~~~l~~~G~~v~~g~  262 (339)
T 1rjw_A          222 KF-----MKEKV--GGVHAAVVTAVSK---PAFQSAYNSIRRGGACVLVGL  262 (339)
T ss_dssp             HH-----HHHHH--SSEEEEEESSCCH---HHHHHHHHHEEEEEEEEECCC
T ss_pred             HH-----HHHHh--CCCCEEEECCCCH---HHHHHHHHHhhcCCEEEEecc
Confidence            00     00111  4799999876532   345667788999999987544

>1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A

Probab=95.36  E-value=0.25  Score=42.04  Aligned_cols=124  Identities=14%  Similarity=0.073  Sum_probs=75.0

Q ss_pred             HHHHHHHHHhhc--cCCCeEEEEcCcchHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHHcCC-----CC--------
Q 026513           57 TKLCLLLLRRLI--KGGELFLDYGTGSGILGIAAIKF-GAAMSVGADIDPQAIKSAHQNAALNNI-----GP--------  120 (237)
Q Consensus        57 ~~~~~~~l~~~~--~~~~~vLDlG~G~G~~~~~la~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~-----~~--------  120 (237)
                      ++.+...+...+  .+...|+.+|||..+....+... +...++-+|. |.+++.-++.+...+.     ..        
T Consensus        82 t~~iD~~v~~fl~~~~~~qVV~LGaGlDTr~~RL~~~~~~~~~~EvD~-P~vi~~K~~~l~~~~~l~~~l~~~~~~~~~~  160 (334)
T 1rjd_A           82 TVGIDAAILEFLVANEKVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDY-NESVELKNSILRESEILRISLGLSKEDTAKS  160 (334)
T ss_dssp             HHHHHHHHHHHHHHCSSEEEEEETCTTCCTHHHHHHHCTTEEEEEEEC-HHHHHHHHHHHHHSHHHHHHHTCCSSCCCCT
T ss_pred             HHHHHHHHHHHHHHCCCcEEEEeCCCCccHHHHhcCcCCCCEEEECCC-HHHHHHHHHHhhhccchhhhccccccccccc
Confidence            344444444433  35578999999999999888764 4456677777 8788877777665420     00        


Q ss_pred             ----CcceEEeccCccccccccccccccccccccccccCCCCCCceeEEEEeCChHH-----HHHHHHHHhHhcCCCeEE
Q 026513          121 ----KKMKLHLVPDRTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLNP-----LLQLADHIVSYAKPGAVV  191 (237)
Q Consensus       121 ----~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~~~-----~~~~l~~~~~~L~~gG~l  191 (237)
                          ..-+..++.+|+.+..       +++.    .+..........++++-.++..     ...+++.+...+ |+|.+
T Consensus       161 ~~~~~~~~~~~v~~DL~d~~-------w~~~----ll~~~~d~~~Ptl~iaEgvL~YL~~~~~~~ll~~ia~~~-~~~~~  228 (334)
T 1rjd_A          161 PFLIDQGRYKLAACDLNDIT-------ETTR----LLDVCTKREIPTIVISECLLCYMHNNESQLLINTIMSKF-SHGLW  228 (334)
T ss_dssp             TEEEECSSEEEEECCTTCHH-------HHHH----HHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHC-SSEEE
T ss_pred             ccccCCCceEEEecCCCCcH-------HHHH----HHHhcCCCCCCEEEEEcchhhCCCHHHHHHHHHHHHhhC-CCcEE
Confidence                0013778888887521       1111    0112222356788888887644     356778777776 67766


Q ss_pred             EE
Q 026513          192 GI  193 (237)
Q Consensus       192 ii  193 (237)
                      ++
T Consensus       229 v~  230 (334)
T 1rjd_A          229 IS  230 (334)
T ss_dssp             EE
T ss_pred             EE
Confidence            53

>2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A*

Probab=95.28  E-value=0.079  Score=45.28  Aligned_cols=100  Identities=15%  Similarity=0.124  Sum_probs=63.7

Q ss_pred             ccCC------CeEEEEcCcc-hHHH-HHHH-Hh-CCCeEEEEeCCHH---HHHHHHHHHHHcCCCCCcceEEeccCcccc
Q 026513           68 IKGG------ELFLDYGTGS-GILG-IAAI-KF-GAAMSVGADIDPQ---AIKSAHQNAALNNIGPKKMKLHLVPDRTFT  134 (237)
Q Consensus        68 ~~~~------~~vLDlG~G~-G~~~-~~la-~~-~~~~v~~vD~s~~---~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~  134 (237)
                      +++|      .+||-+|+|. |.++ +.++ +. |..+|+++|.+++   .++.+++    .|..    .+     |..+
T Consensus       164 ~~~g~~~~~~~~VlV~GaG~vG~~a~iqla~k~~Ga~~Vi~~~~~~~~~~~~~~~~~----lGa~----~v-----~~~~  230 (357)
T 2b5w_A          164 ASRSAFDWDPSSAFVLGNGSLGLLTLAMLKVDDKGYENLYCLGRRDRPDPTIDIIEE----LDAT----YV-----DSRQ  230 (357)
T ss_dssp             HTTTTSCCCCCEEEEECCSHHHHHHHHHHHHCTTCCCEEEEEECCCSSCHHHHHHHH----TTCE----EE-----ETTT
T ss_pred             CCCCcccCCCCEEEEECCCHHHHHHHHHHHHHHcCCcEEEEEeCCcccHHHHHHHHH----cCCc----cc-----CCCc
Confidence            5688      9999999864 7777 7777 64 6656999999987   7777653    2422    12     2111


Q ss_pred             ccccccccccccccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEeccCC
Q 026513          135 ASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILS  198 (237)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~~~~  198 (237)
                      ..       +.+      +... .. .+|+|+-.....   ..+..+.+.|+++|.+++.+...
T Consensus       231 ~~-------~~~------i~~~-~g-g~Dvvid~~g~~---~~~~~~~~~l~~~G~iv~~g~~~  276 (357)
T 2b5w_A          231 TP-------VED------VPDV-YE-QMDFIYEATGFP---KHAIQSVQALAPNGVGALLGVPS  276 (357)
T ss_dssp             SC-------GGG------HHHH-SC-CEEEEEECSCCH---HHHHHHHHHEEEEEEEEECCCCC
T ss_pred             cC-------HHH------HHHh-CC-CCCEEEECCCCh---HHHHHHHHHHhcCCEEEEEeCCC
Confidence            00       000      0112 23 799999765432   24566788999999999865543

>2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A*

Probab=95.26  E-value=0.051  Score=46.07  Aligned_cols=101  Identities=12%  Similarity=0.123  Sum_probs=62.4

Q ss_pred             ccCCCeEEEEcC--cchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccC-cccccccccccccc
Q 026513           68 IKGGELFLDYGT--GSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPD-RTFTASMNERVDGV  144 (237)
Q Consensus        68 ~~~~~~vLDlG~--G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~-d~~~~~~~~~~~~~  144 (237)
                      +++|++||-.|+  |.|..+..+++.-..+|++++.++..++.+++.   .+...   -+..... ++.         +.
T Consensus       153 ~~~g~~vlI~Ga~g~iG~~~~~~a~~~G~~V~~~~~~~~~~~~~~~~---~g~~~---~~d~~~~~~~~---------~~  217 (345)
T 2j3h_A          153 PKEGETVYVSAASGAVGQLVGQLAKMMGCYVVGSAGSKEKVDLLKTK---FGFDD---AFNYKEESDLT---------AA  217 (345)
T ss_dssp             CCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHT---SCCSE---EEETTSCSCSH---------HH
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH---cCCce---EEecCCHHHHH---------HH
Confidence            568999999997  356777766654234799999999887776532   23221   0111110 110         00


Q ss_pred             ccccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEecc
Q 026513          145 VEDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGI  196 (237)
Q Consensus       145 ~~~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~~  196 (237)
                              +.... .+.+|+++.+....    .+....+.|+++|.+++.+.
T Consensus       218 --------~~~~~-~~~~d~vi~~~g~~----~~~~~~~~l~~~G~~v~~G~  256 (345)
T 2j3h_A          218 --------LKRCF-PNGIDIYFENVGGK----MLDAVLVNMNMHGRIAVCGM  256 (345)
T ss_dssp             --------HHHHC-TTCEEEEEESSCHH----HHHHHHTTEEEEEEEEECCC
T ss_pred             --------HHHHh-CCCCcEEEECCCHH----HHHHHHHHHhcCCEEEEEcc
Confidence                    11111 24799999887542    56777889999999988544

>1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP}

Probab=95.11  E-value=0.052  Score=45.89  Aligned_cols=101  Identities=17%  Similarity=0.193  Sum_probs=61.8

Q ss_pred             ccCCCeEEEEcC--cchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccc
Q 026513           68 IKGGELFLDYGT--GSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVV  145 (237)
Q Consensus        68 ~~~~~~vLDlG~--G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  145 (237)
                      +++|.+||-.|+  |.|.....+++.-..+|+++|.+++.++.+++.    +...   -+.....+..            
T Consensus       143 ~~~g~~vlV~Ga~ggiG~~~~~~a~~~G~~Vi~~~~~~~~~~~~~~~----g~~~---~~d~~~~~~~------------  203 (333)
T 1wly_A          143 VKPGDYVLIHAAAGGMGHIMVPWARHLGATVIGTVSTEEKAETARKL----GCHH---TINYSTQDFA------------  203 (333)
T ss_dssp             CCTTCEEEETTTTSTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHHH----TCSE---EEETTTSCHH------------
T ss_pred             CCCCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHc----CCCE---EEECCCHHHH------------
Confidence            567899999995  446666666654234799999999887777542    3221   1111111110            


Q ss_pred             cccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEecc
Q 026513          146 EDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGI  196 (237)
Q Consensus       146 ~~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~~  196 (237)
                      +.     +........+|+++.+...    ..++.+.+.|+++|.++..+.
T Consensus       204 ~~-----i~~~~~~~~~d~vi~~~g~----~~~~~~~~~l~~~G~iv~~g~  245 (333)
T 1wly_A          204 EV-----VREITGGKGVDVVYDSIGK----DTLQKSLDCLRPRGMCAAYGH  245 (333)
T ss_dssp             HH-----HHHHHTTCCEEEEEECSCT----TTHHHHHHTEEEEEEEEECCC
T ss_pred             HH-----HHHHhCCCCCeEEEECCcH----HHHHHHHHhhccCCEEEEEec
Confidence            00     0011113479999987754    345677889999999988654

>1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1

Probab=95.07  E-value=0.055  Score=46.24  Aligned_cols=100  Identities=18%  Similarity=0.166  Sum_probs=60.4

Q ss_pred             ccCCCeEEEEcC--cchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccc
Q 026513           68 IKGGELFLDYGT--GSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVV  145 (237)
Q Consensus        68 ~~~~~~vLDlG~--G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  145 (237)
                      +++|++||-.|+  |.|..+..+++.-..+|++++.+++.++.+++    .+...   -+.....+..            
T Consensus       168 ~~~g~~vlV~GasggiG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~----~ga~~---~~d~~~~~~~------------  228 (351)
T 1yb5_A          168 VKAGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIVLQ----NGAHE---VFNHREVNYI------------  228 (351)
T ss_dssp             CCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH----TTCSE---EEETTSTTHH------------
T ss_pred             CCCcCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCChhHHHHHHH----cCCCE---EEeCCCchHH------------
Confidence            568899999997  34666666665433479999999988776643    23221   0111111110            


Q ss_pred             cccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEec
Q 026513          146 EDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISG  195 (237)
Q Consensus       146 ~~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~  195 (237)
                      +.     +........+|+++.+...    ..+....+.|+++|.+++.+
T Consensus       229 ~~-----~~~~~~~~~~D~vi~~~G~----~~~~~~~~~l~~~G~iv~~g  269 (351)
T 1yb5_A          229 DK-----IKKYVGEKGIDIIIEMLAN----VNLSKDLSLLSHGGRVIVVG  269 (351)
T ss_dssp             HH-----HHHHHCTTCEEEEEESCHH----HHHHHHHHHEEEEEEEEECC
T ss_pred             HH-----HHHHcCCCCcEEEEECCCh----HHHHHHHHhccCCCEEEEEe
Confidence            00     0011123479999987632    23566788999999998754

>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A*

Probab=95.06  E-value=0.086  Score=45.20  Aligned_cols=100  Identities=13%  Similarity=0.090  Sum_probs=63.1

Q ss_pred             ccCCCeEEEEc-Cc-chHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccc
Q 026513           68 IKGGELFLDYG-TG-SGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVV  145 (237)
Q Consensus        68 ~~~~~~vLDlG-~G-~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  145 (237)
                      +++|.+||-.| +| .|..++.+++.-..+|++++.+++.++.+++    .+...   -+.....++.            
T Consensus       161 ~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~----~Ga~~---~~~~~~~~~~------------  221 (362)
T 2c0c_A          161 LSEGKKVLVTAAAGGTGQFAMQLSKKAKCHVIGTCSSDEKSAFLKS----LGCDR---PINYKTEPVG------------  221 (362)
T ss_dssp             CCTTCEEEETTTTBTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHH----TTCSE---EEETTTSCHH------------
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHH----cCCcE---EEecCChhHH------------
Confidence            57899999999 34 4777777776433479999999988877764    23321   0111111110            


Q ss_pred             cccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEecc
Q 026513          146 EDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGI  196 (237)
Q Consensus       146 ~~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~~  196 (237)
                      +.     +.... ...+|+|+.+...    ..+..+.+.|+++|.+++.+.
T Consensus       222 ~~-----~~~~~-~~g~D~vid~~g~----~~~~~~~~~l~~~G~iv~~g~  262 (362)
T 2c0c_A          222 TV-----LKQEY-PEGVDVVYESVGG----AMFDLAVDALATKGRLIVIGF  262 (362)
T ss_dssp             HH-----HHHHC-TTCEEEEEECSCT----HHHHHHHHHEEEEEEEEECCC
T ss_pred             HH-----HHHhc-CCCCCEEEECCCH----HHHHHHHHHHhcCCEEEEEeC
Confidence            00     00111 3479999987654    355778889999999988654

>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli}

Probab=95.03  E-value=0.064  Score=45.83  Aligned_cols=100  Identities=12%  Similarity=0.087  Sum_probs=62.4

Q ss_pred             ccCCCeEEEEc-Cc-chHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccc
Q 026513           68 IKGGELFLDYG-TG-SGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVV  145 (237)
Q Consensus        68 ~~~~~~vLDlG-~G-~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  145 (237)
                      +++|++||-.| +| .|..+..+++.-..+|+++|.++..++.+++.    +...   -+.....+..            
T Consensus       165 ~~~g~~VlV~Gg~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~l----Ga~~---~~~~~~~~~~------------  225 (353)
T 4dup_A          165 LTEGESVLIHGGTSGIGTTAIQLARAFGAEVYATAGSTGKCEACERL----GAKR---GINYRSEDFA------------  225 (353)
T ss_dssp             CCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHH----TCSE---EEETTTSCHH------------
T ss_pred             CCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhc----CCCE---EEeCCchHHH------------
Confidence            56889999995 33 46777777765334799999999988877652    3221   0111111111            


Q ss_pred             cccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEecc
Q 026513          146 EDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGI  196 (237)
Q Consensus       146 ~~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~~  196 (237)
                      +.     +.... ...+|+++.+....    .+....+.|+++|.+++.+.
T Consensus       226 ~~-----~~~~~-~~g~Dvvid~~g~~----~~~~~~~~l~~~G~iv~~g~  266 (353)
T 4dup_A          226 AV-----IKAET-GQGVDIILDMIGAA----YFERNIASLAKDGCLSIIAF  266 (353)
T ss_dssp             HH-----HHHHH-SSCEEEEEESCCGG----GHHHHHHTEEEEEEEEECCC
T ss_pred             HH-----HHHHh-CCCceEEEECCCHH----HHHHHHHHhccCCEEEEEEe
Confidence            00     01111 35799999876543    45667789999999988654

>2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A*

Probab=95.02  E-value=0.084  Score=45.08  Aligned_cols=102  Identities=11%  Similarity=0.131  Sum_probs=61.8

Q ss_pred             ccCCCeEEEEcC--cchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccc
Q 026513           68 IKGGELFLDYGT--GSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVV  145 (237)
Q Consensus        68 ~~~~~~vLDlG~--G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  145 (237)
                      +++|++||-.|+  |.|..+..+++....+|+++|.++..++.+++.    +...   -+.....+..            
T Consensus       160 ~~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~----g~~~---~~~~~~~~~~------------  220 (354)
T 2j8z_A          160 VQAGDYVLIHAGLSGVGTAAIQLTRMAGAIPLVTAGSQKKLQMAEKL----GAAA---GFNYKKEDFS------------  220 (354)
T ss_dssp             CCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH----TCSE---EEETTTSCHH------------
T ss_pred             CCCCCEEEEECCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHc----CCcE---EEecCChHHH------------
Confidence            567899999984  346666666654334799999999888877432    3221   1111111110            


Q ss_pred             cccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEeccC
Q 026513          146 EDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGIL  197 (237)
Q Consensus       146 ~~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~~~  197 (237)
                      +.     +........+|+++.+....    .+....+.|+++|.+++.+..
T Consensus       221 ~~-----~~~~~~~~~~d~vi~~~G~~----~~~~~~~~l~~~G~iv~~G~~  263 (354)
T 2j8z_A          221 EA-----TLKFTKGAGVNLILDCIGGS----YWEKNVNCLALDGRWVLYGLM  263 (354)
T ss_dssp             HH-----HHHHTTTSCEEEEEESSCGG----GHHHHHHHEEEEEEEEECCCT
T ss_pred             HH-----HHHHhcCCCceEEEECCCch----HHHHHHHhccCCCEEEEEecc
Confidence            00     11111234799999877543    345667889999999986543

>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11

Probab=95.02  E-value=0.02  Score=48.61  Aligned_cols=36  Identities=17%  Similarity=0.205  Sum_probs=30.7

Q ss_pred             CCceeEEEEeCChH-----------------HHHHHHHHHhHhcCCCeEEEEe
Q 026513          159 TEKYDVVIANILLN-----------------PLLQLADHIVSYAKPGAVVGIS  194 (237)
Q Consensus       159 ~~~fD~I~~n~~~~-----------------~~~~~l~~~~~~L~~gG~liis  194 (237)
                      +++||+|+++||+.                 .+...+..+.++|+|||.+++.
T Consensus        31 ~~svDlI~tDPPY~~~~~~~y~~~~~~~~~~~l~~~l~~~~rvLk~~G~i~i~   83 (323)
T 1boo_A           31 EESISLVMTSPPFALQRKKEYGNLEQHEYVDWFLSFAKVVNKKLKPDGSFVVD   83 (323)
T ss_dssp             SSCEEEEEECCCCSSSCSCSSCSCHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             CCCeeEEEECCCCCCCcccccCCcCHHHHHHHHHHHHHHHHHHCcCCcEEEEE
Confidence            57899999999962                 3456788899999999999996

>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A*

Probab=95.01  E-value=0.037  Score=47.09  Aligned_cols=103  Identities=17%  Similarity=0.259  Sum_probs=62.8

Q ss_pred             hccCCCeEEEEcCcc--hHHHHHHHH-h-CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccc
Q 026513           67 LIKGGELFLDYGTGS--GILGIAAIK-F-GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVD  142 (237)
Q Consensus        67 ~~~~~~~vLDlG~G~--G~~~~~la~-~-~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~  142 (237)
                      .+++|++||-.|+|+  |..+..+++ . |. +|+++|.++..++.+++.    +...   -+.....+..         
T Consensus       167 ~~~~g~~vlV~Gagg~iG~~~~~~a~~~~Ga-~Vi~~~~~~~~~~~~~~~----g~~~---~~~~~~~~~~---------  229 (347)
T 1jvb_A          167 SLDPTKTLLVVGAGGGLGTMAVQIAKAVSGA-TIIGVDVREEAVEAAKRA----GADY---VINASMQDPL---------  229 (347)
T ss_dssp             TCCTTCEEEEETTTSHHHHHHHHHHHHHTCC-EEEEEESSHHHHHHHHHH----TCSE---EEETTTSCHH---------
T ss_pred             CCCCCCEEEEECCCccHHHHHHHHHHHcCCC-eEEEEcCCHHHHHHHHHh----CCCE---EecCCCccHH---------
Confidence            357899999999984  455555554 4 54 799999999888877542    3221   0111111110         


Q ss_pred             ccccccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEeccC
Q 026513          143 GVVEDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGIL  197 (237)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~~~  197 (237)
                         +.     +......+.+|+++.+....   ..++...+.|+++|.+++.+..
T Consensus       230 ---~~-----~~~~~~~~~~d~vi~~~g~~---~~~~~~~~~l~~~G~iv~~g~~  273 (347)
T 1jvb_A          230 ---AE-----IRRITESKGVDAVIDLNNSE---KTLSVYPKALAKQGKYVMVGLF  273 (347)
T ss_dssp             ---HH-----HHHHTTTSCEEEEEESCCCH---HHHTTGGGGEEEEEEEEECCSS
T ss_pred             ---HH-----HHHHhcCCCceEEEECCCCH---HHHHHHHHHHhcCCEEEEECCC
Confidence               00     00111114799999876432   3456778899999999886543

>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}

Probab=94.99  E-value=0.17  Score=41.37  Aligned_cols=84  Identities=15%  Similarity=0.135  Sum_probs=56.8

Q ss_pred             CCCeEEEEcCcchH---HHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccc
Q 026513           70 GGELFLDYGTGSGI---LGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVE  146 (237)
Q Consensus        70 ~~~~vLDlG~G~G~---~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  146 (237)
                      +|+++|--|.+.|.   .+..+++.|+ +|+.+|.+++.++.+.+.+...+..     +.++.+|+.+..-   ++++++
T Consensus         6 ~gKvalVTGas~GIG~aiA~~la~~Ga-~Vv~~~~~~~~~~~~~~~i~~~g~~-----~~~~~~Dvt~~~~---v~~~~~   76 (254)
T 4fn4_A            6 KNKVVIVTGAGSGIGRAIAKKFALNDS-IVVAVELLEDRLNQIVQELRGMGKE-----VLGVKADVSKKKD---VEEFVR   76 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCC-----EEEEECCTTSHHH---HHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCc-----EEEEEccCCCHHH---HHHHHH
Confidence            58899999988873   4445566655 5999999999998888887766543     7788889875322   222222


Q ss_pred             ccccccccCCCCCCceeEEEEeC
Q 026513          147 DLSSHKIRGISQTEKYDVVIANI  169 (237)
Q Consensus       147 ~~~~~~~~~~~~~~~fD~I~~n~  169 (237)
                      .-       ...-++.|+++.|.
T Consensus        77 ~~-------~~~~G~iDiLVNNA   92 (254)
T 4fn4_A           77 RT-------FETYSRIDVLCNNA   92 (254)
T ss_dssp             HH-------HHHHSCCCEEEECC
T ss_pred             HH-------HHHcCCCCEEEECC
Confidence            21       00025789999876

>3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A

Probab=94.93  E-value=0.096  Score=46.41  Aligned_cols=113  Identities=15%  Similarity=0.141  Sum_probs=64.5

Q ss_pred             ccCCCeEEEEcC-c-chHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccc---cc--ccccc
Q 026513           68 IKGGELFLDYGT-G-SGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTF---TA--SMNER  140 (237)
Q Consensus        68 ~~~~~~vLDlG~-G-~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~---~~--~~~~~  140 (237)
                      +++|.+||-+|+ | .|.+++.+++....++++++.++..++.+++.    |...   -+.....|..   +.  .-.+.
T Consensus       226 ~~~g~~VlV~GasG~vG~~avqlak~~Ga~vi~~~~~~~~~~~~~~l----Ga~~---vi~~~~~d~~~~~~~~~~~~~~  298 (456)
T 3krt_A          226 MKQGDNVLIWGASGGLGSYATQFALAGGANPICVVSSPQKAEICRAM----GAEA---IIDRNAEGYRFWKDENTQDPKE  298 (456)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHH----TCCE---EEETTTTTCCSEEETTEECHHH
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHcCCeEEEEECCHHHHHHHHhh----CCcE---EEecCcCcccccccccccchHH
Confidence            568899999997 4 47778877775445788999999888877642    4321   1111111110   00  00000


Q ss_pred             ccccccccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEecc
Q 026513          141 VDGVVEDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGI  196 (237)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~~  196 (237)
                      ...+.+     .+........+|+|+-....    ..+.....+|+++|.+++.+.
T Consensus       299 ~~~~~~-----~i~~~t~g~g~Dvvid~~G~----~~~~~~~~~l~~~G~iv~~G~  345 (456)
T 3krt_A          299 WKRFGK-----RIRELTGGEDIDIVFEHPGR----ETFGASVFVTRKGGTITTCAS  345 (456)
T ss_dssp             HHHHHH-----HHHHHHTSCCEEEEEECSCH----HHHHHHHHHEEEEEEEEESCC
T ss_pred             HHHHHH-----HHHHHhCCCCCcEEEEcCCc----hhHHHHHHHhhCCcEEEEEec
Confidence            000000     01111223589999976643    345667789999999998543

>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A*

Probab=94.83  E-value=0.014  Score=49.66  Aligned_cols=97  Identities=20%  Similarity=0.265  Sum_probs=60.6

Q ss_pred             CCCeEEEEcCcc-hHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceE-EeccCcccccccccccccccc
Q 026513           70 GGELFLDYGTGS-GILGIAAIKF-GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKL-HLVPDRTFTASMNERVDGVVE  146 (237)
Q Consensus        70 ~~~~vLDlG~G~-G~~~~~la~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v-~~~~~d~~~~~~~~~~~~~~~  146 (237)
                      +|.+||-+|+|. |..++.+++. |..+|+++|.++..++.+++.  .   .    .+ .....++.            +
T Consensus       164 ~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~l--a---~----~v~~~~~~~~~------------~  222 (343)
T 2dq4_A          164 SGKSVLITGAGPIGLMAAMVVRASGAGPILVSDPNPYRLAFARPY--A---D----RLVNPLEEDLL------------E  222 (343)
T ss_dssp             TTSCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHGGGTTT--C---S----EEECTTTSCHH------------H
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh--H---H----hccCcCccCHH------------H
Confidence            889999999864 6677777764 655799999999877766542  1   1    11 11011110            0


Q ss_pred             ccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEecc
Q 026513          147 DLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGI  196 (237)
Q Consensus       147 ~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~~  196 (237)
                      .     +.... ...+|+|+.....   ...++...+.|+++|.+++.+.
T Consensus       223 ~-----~~~~~-~~g~D~vid~~g~---~~~~~~~~~~l~~~G~iv~~g~  263 (343)
T 2dq4_A          223 V-----VRRVT-GSGVEVLLEFSGN---EAAIHQGLMALIPGGEARILGI  263 (343)
T ss_dssp             H-----HHHHH-SSCEEEEEECSCC---HHHHHHHHHHEEEEEEEEECCC
T ss_pred             H-----HHHhc-CCCCCEEEECCCC---HHHHHHHHHHHhcCCEEEEEec
Confidence            0     01111 3479999976643   2345667888999999988654

>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp}

Probab=94.68  E-value=0.26  Score=40.28  Aligned_cols=85  Identities=16%  Similarity=0.155  Sum_probs=57.5

Q ss_pred             CCCeEEEEcCcchH---HHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccc
Q 026513           70 GGELFLDYGTGSGI---LGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVE  146 (237)
Q Consensus        70 ~~~~vLDlG~G~G~---~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  146 (237)
                      .|+++|--|.+.|.   .+..+++.|+ +|+.+|.+++.++.+.+.+...+..     +..+.+|+.+..   .++.+++
T Consensus         8 ~gKvalVTGas~GIG~aia~~la~~Ga-~Vvi~~~~~~~~~~~~~~l~~~g~~-----~~~~~~Dv~~~~---~v~~~~~   78 (255)
T 4g81_D            8 TGKTALVTGSARGLGFAYAEGLAAAGA-RVILNDIRATLLAESVDTLTRKGYD-----AHGVAFDVTDEL---AIEAAFS   78 (255)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEECCSCHHHHHHHHHHHHHTTCC-----EEECCCCTTCHH---HHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCc-----EEEEEeeCCCHH---HHHHHHH
Confidence            58889999988873   4445566665 5999999999988887777766543     778889987532   2222222


Q ss_pred             ccccccccCCCCCCceeEEEEeCC
Q 026513          147 DLSSHKIRGISQTEKYDVVIANIL  170 (237)
Q Consensus       147 ~~~~~~~~~~~~~~~fD~I~~n~~  170 (237)
                      ..       ...-++.|+++.|..
T Consensus        79 ~~-------~~~~G~iDiLVNNAG   95 (255)
T 4g81_D           79 KL-------DAEGIHVDILINNAG   95 (255)
T ss_dssp             HH-------HHTTCCCCEEEECCC
T ss_pred             HH-------HHHCCCCcEEEECCC
Confidence            21       011367999998774

>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*

Probab=94.67  E-value=0.026  Score=52.81  Aligned_cols=138  Identities=12%  Similarity=0.088  Sum_probs=76.6

Q ss_pred             CCCeEEEEcCcchHHHHHHHHh--------C-----CCeEEEEeCCHHHHHHHHHH--------------HHHcC-----
Q 026513           70 GGELFLDYGTGSGILGIAAIKF--------G-----AAMSVGADIDPQAIKSAHQN--------------AALNN-----  117 (237)
Q Consensus        70 ~~~~vLDlG~G~G~~~~~la~~--------~-----~~~v~~vD~s~~~i~~a~~~--------------~~~~~-----  117 (237)
                      +..+|+|+|.|+|...+.+.+.        +     .-+++.+|..|-..+.+++.              +..-+     
T Consensus        58 ~~~~i~e~gfG~G~n~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~  137 (689)
T 3pvc_A           58 QSCIFAETGFGTGLNFLTLWRDFALFRQQSPNATLRRLHYISFEKYPLHVADLASAHARWPELASFAEQLRAQWPLPLAG  137 (689)
T ss_dssp             SEEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCCCSE
T ss_pred             CceEEEEecCchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEeeCCCCCHHHHHHHHHhCcchhHHHHHHHHhCcccCCC
Confidence            3468999999999776654321        1     14689999944333333321              11111     


Q ss_pred             -----CCCCcceEEeccCccccccccccccccccccccccccCCC--CCCceeEEEEeCChHHH------HHHHHHHhHh
Q 026513          118 -----IGPKKMKLHLVPDRTFTASMNERVDGVVEDLSSHKIRGIS--QTEKYDVVIANILLNPL------LQLADHIVSY  184 (237)
Q Consensus       118 -----~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~fD~I~~n~~~~~~------~~~l~~~~~~  184 (237)
                           +.+..+.+.++.+|+.+.                 +..+.  ...++|.++.++.....      .+++..+.++
T Consensus       138 ~~r~~~~~~~~~l~l~~gd~~~~-----------------l~~~~~~~~~~~da~flD~f~p~~np~~w~~~~~~~l~~~  200 (689)
T 3pvc_A          138 CHRILLADGAITLDLWFGDVNTL-----------------LPTLDDSLNNQVDAWFLDGFAPAKNPDMWNEQLFNAMARM  200 (689)
T ss_dssp             EEEEEETTTTEEEEEEESCHHHH-----------------GGGCCGGGTTCEEEEEECSSCC--CCTTCSHHHHHHHHHH
T ss_pred             ceEEEecCCcEEEEEEccCHHHH-----------------HhhcccccCCceeEEEECCCCCCCChhhhhHHHHHHHHHH
Confidence                 112334566777777531                 11111  13689999998753222      5788999999


Q ss_pred             cCCCeEEEEeccCCCCHHHHHHHHhh-ccccceeee-cCCEEEEEE
Q 026513          185 AKPGAVVGISGILSEQLPHIINRYSE-FLEDILVSE-MDDWTCVSG  228 (237)
Q Consensus       185 L~~gG~liis~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~w~~~~~  228 (237)
                      ++|||.+..-...    ..+...+.+ .|....... ...+..+..
T Consensus       201 ~~~g~~~~t~~~~----~~vr~~l~~aGf~~~~~~~~~~k~~~~~~  242 (689)
T 3pvc_A          201 TRPGGTFSTFTAA----GFVRRGLQQAGFNVTKVKGFGQKREMLTG  242 (689)
T ss_dssp             EEEEEEEEESCCC----HHHHHHHHHTTCEEEEEECSSSSCEEEEE
T ss_pred             hCCCCEEEeccCc----HHHHHHHHhCCeEEEeccCCCcccccccc
Confidence            9999987753222    344444443 354444332 223444443

>3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A*

Probab=94.63  E-value=0.33  Score=40.60  Aligned_cols=92  Identities=12%  Similarity=0.114  Sum_probs=59.9

Q ss_pred             eEEEEcC-c-chHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccccc
Q 026513           73 LFLDYGT-G-SGILGIAAIKF-GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDLS  149 (237)
Q Consensus        73 ~vLDlG~-G-~G~~~~~la~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~  149 (237)
                      +||-.|+ | .|.+++.+++. |+ +|++++.+++.++.+++    .|...    +. -..+..                
T Consensus       149 ~VlV~Ga~G~vG~~aiqla~~~Ga-~Vi~~~~~~~~~~~~~~----lGa~~----vi-~~~~~~----------------  202 (324)
T 3nx4_A          149 EVVVTGASGGVGSTAVALLHKLGY-QVAAVSGRESTHGYLKS----LGANR----IL-SRDEFA----------------  202 (324)
T ss_dssp             CEEESSTTSHHHHHHHHHHHHTTC-CEEEEESCGGGHHHHHH----HTCSE----EE-EGGGSS----------------
T ss_pred             eEEEECCCcHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHh----cCCCE----EE-ecCCHH----------------
Confidence            4999997 3 47888888865 55 79999999998888865    24321    11 011110                


Q ss_pred             cccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEeccC
Q 026513          150 SHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGIL  197 (237)
Q Consensus       150 ~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~~~  197 (237)
                        ...... .+.+|+++-.....    .+..+.+.|+++|+++..+..
T Consensus       203 --~~~~~~-~~~~d~v~d~~g~~----~~~~~~~~l~~~G~iv~~G~~  243 (324)
T 3nx4_A          203 --ESRPLE-KQLWAGAIDTVGDK----VLAKVLAQMNYGGCVAACGLA  243 (324)
T ss_dssp             --CCCSSC-CCCEEEEEESSCHH----HHHHHHHTEEEEEEEEECCCT
T ss_pred             --HHHhhc-CCCccEEEECCCcH----HHHHHHHHHhcCCEEEEEecC
Confidence              011222 35799988655432    567788899999999986554

>2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A*

Probab=94.50  E-value=0.11  Score=44.38  Aligned_cols=101  Identities=16%  Similarity=0.189  Sum_probs=62.1

Q ss_pred             ccCC--CeEEEEcCc--chHHHHHHHH-hCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccc
Q 026513           68 IKGG--ELFLDYGTG--SGILGIAAIK-FGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVD  142 (237)
Q Consensus        68 ~~~~--~~vLDlG~G--~G~~~~~la~-~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~  142 (237)
                      +++|  ++||-.|++  .|.....+++ .|..+|+++|.++..++.+++.   .+...   .+.....+..         
T Consensus       156 ~~~g~~~~vlI~GasggiG~~~~~~a~~~Ga~~Vi~~~~~~~~~~~~~~~---~g~~~---~~d~~~~~~~---------  220 (357)
T 2zb4_A          156 ITAGSNKTMVVSGAAGACGSVAGQIGHFLGCSRVVGICGTHEKCILLTSE---LGFDA---AINYKKDNVA---------  220 (357)
T ss_dssp             CCTTSCCEEEESSTTBHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT---SCCSE---EEETTTSCHH---------
T ss_pred             CCCCCccEEEEECCCcHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHH---cCCce---EEecCchHHH---------
Confidence            5778  999999983  3566666655 4655899999998777766542   23221   1111111110         


Q ss_pred             ccccccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEecc
Q 026513          143 GVVEDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGI  196 (237)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~~  196 (237)
                         +     .+...... .+|+++.+...    ..+..+.+.|+++|++++.+.
T Consensus       221 ---~-----~~~~~~~~-~~d~vi~~~G~----~~~~~~~~~l~~~G~iv~~G~  261 (357)
T 2zb4_A          221 ---E-----QLRESCPA-GVDVYFDNVGG----NISDTVISQMNENSHIILCGQ  261 (357)
T ss_dssp             ---H-----HHHHHCTT-CEEEEEESCCH----HHHHHHHHTEEEEEEEEECCC
T ss_pred             ---H-----HHHHhcCC-CCCEEEECCCH----HHHHHHHHHhccCcEEEEECC
Confidence               0     00111112 79999988753    456778889999999988544

>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A

Probab=94.46  E-value=0.02  Score=49.07  Aligned_cols=99  Identities=14%  Similarity=0.047  Sum_probs=61.7

Q ss_pred             hccCCCeEEEEcCcc-hHHHHHHHH-hCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccC-ccccccccccccc
Q 026513           67 LIKGGELFLDYGTGS-GILGIAAIK-FGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPD-RTFTASMNERVDG  143 (237)
Q Consensus        67 ~~~~~~~vLDlG~G~-G~~~~~la~-~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~-d~~~~~~~~~~~~  143 (237)
                      .+++|.+||-+|+|. |.+++.+++ .|. +|+++|.++..++.+++    .|...   -+..... ++.          
T Consensus       176 ~~~~g~~VlV~GaG~vG~~~~qlak~~Ga-~Vi~~~~~~~~~~~~~~----lGa~~---v~~~~~~~~~~----------  237 (360)
T 1piw_A          176 GCGPGKKVGIVGLGGIGSMGTLISKAMGA-ETYVISRSSRKREDAMK----MGADH---YIATLEEGDWG----------  237 (360)
T ss_dssp             TCSTTCEEEEECCSHHHHHHHHHHHHHTC-EEEEEESSSTTHHHHHH----HTCSE---EEEGGGTSCHH----------
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHH----cCCCE---EEcCcCchHHH----------
Confidence            357899999999864 677777776 465 69999999988887765    24321   0111111 111          


Q ss_pred             cccccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEecc
Q 026513          144 VVEDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGI  196 (237)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~~  196 (237)
                        +        ...  +.+|+|+....... ...+..+.+.|+++|.++..+.
T Consensus       238 --~--------~~~--~~~D~vid~~g~~~-~~~~~~~~~~l~~~G~iv~~g~  277 (360)
T 1piw_A          238 --E--------KYF--DTFDLIVVCASSLT-DIDFNIMPKAMKVGGRIVSISI  277 (360)
T ss_dssp             --H--------HSC--SCEEEEEECCSCST-TCCTTTGGGGEEEEEEEEECCC
T ss_pred             --H--------Hhh--cCCCEEEECCCCCc-HHHHHHHHHHhcCCCEEEEecC
Confidence              0        111  47999997653300 1224556788999999987543

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=94.26  E-value=0.38  Score=36.64  Aligned_cols=98  Identities=14%  Similarity=0.079  Sum_probs=55.3

Q ss_pred             CCeEEEEcCcc-hHH-HHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccc
Q 026513           71 GELFLDYGTGS-GIL-GIAAIKF-GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVED  147 (237)
Q Consensus        71 ~~~vLDlG~G~-G~~-~~~la~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  147 (237)
                      +.+|+-+|+|. |.. +..+... |. +|+++|.++..++.+++    .+       +.++.+|..+..           
T Consensus        39 ~~~v~IiG~G~~G~~~a~~L~~~~g~-~V~vid~~~~~~~~~~~----~g-------~~~~~gd~~~~~-----------   95 (183)
T 3c85_A           39 HAQVLILGMGRIGTGAYDELRARYGK-ISLGIEIREEAAQQHRS----EG-------RNVISGDATDPD-----------   95 (183)
T ss_dssp             TCSEEEECCSHHHHHHHHHHHHHHCS-CEEEEESCHHHHHHHHH----TT-------CCEEECCTTCHH-----------
T ss_pred             CCcEEEECCCHHHHHHHHHHHhccCC-eEEEEECCHHHHHHHHH----CC-------CCEEEcCCCCHH-----------
Confidence            56899999875 433 2334445 54 59999999987766543    23       224455554211           


Q ss_pred             cccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEec
Q 026513          148 LSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISG  195 (237)
Q Consensus       148 ~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~  195 (237)
                          .+.....-..+|+|++..+-......+....+.+.|++.++...
T Consensus        96 ----~l~~~~~~~~ad~vi~~~~~~~~~~~~~~~~~~~~~~~~ii~~~  139 (183)
T 3c85_A           96 ----FWERILDTGHVKLVLLAMPHHQGNQTALEQLQRRNYKGQIAAIA  139 (183)
T ss_dssp             ----HHHTBCSCCCCCEEEECCSSHHHHHHHHHHHHHTTCCSEEEEEE
T ss_pred             ----HHHhccCCCCCCEEEEeCCChHHHHHHHHHHHHHCCCCEEEEEE
Confidence                01111012468999986554333333334555667788887753

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=94.05  E-value=0.65  Score=33.58  Aligned_cols=95  Identities=12%  Similarity=0.076  Sum_probs=53.9

Q ss_pred             CCeEEEEcCcc-hH-HHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccccc
Q 026513           71 GELFLDYGTGS-GI-LGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDL  148 (237)
Q Consensus        71 ~~~vLDlG~G~-G~-~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~  148 (237)
                      ..+++-+|+|. |. ++..+...| .+|+++|.++..++.+++    .+       +.++.+|..+...           
T Consensus         6 ~~~v~I~G~G~iG~~la~~L~~~g-~~V~~id~~~~~~~~~~~----~~-------~~~~~gd~~~~~~-----------   62 (141)
T 3llv_A            6 RYEYIVIGSEAAGVGLVRELTAAG-KKVLAVDKSKEKIELLED----EG-------FDAVIADPTDESF-----------   62 (141)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTT-CCEEEEESCHHHHHHHHH----TT-------CEEEECCTTCHHH-----------
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCC-CeEEEEECCHHHHHHHHH----CC-------CcEEECCCCCHHH-----------
Confidence            45799999865 22 222333444 469999999988776653    22       3456677653211           


Q ss_pred             ccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEe
Q 026513          149 SSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGIS  194 (237)
Q Consensus       149 ~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis  194 (237)
                          +... ....+|+|++..+-......+....+.+. ...++..
T Consensus        63 ----l~~~-~~~~~d~vi~~~~~~~~n~~~~~~a~~~~-~~~iia~  102 (141)
T 3llv_A           63 ----YRSL-DLEGVSAVLITGSDDEFNLKILKALRSVS-DVYAIVR  102 (141)
T ss_dssp             ----HHHS-CCTTCSEEEECCSCHHHHHHHHHHHHHHC-CCCEEEE
T ss_pred             ----HHhC-CcccCCEEEEecCCHHHHHHHHHHHHHhC-CceEEEE
Confidence                1111 12478999987764333333444444555 5555554

>3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans}

Probab=93.98  E-value=0.15  Score=43.33  Aligned_cols=97  Identities=13%  Similarity=0.061  Sum_probs=60.6

Q ss_pred             ccCCCeEEEEcC-c-chHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccc
Q 026513           68 IKGGELFLDYGT-G-SGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVV  145 (237)
Q Consensus        68 ~~~~~~vLDlG~-G-~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  145 (237)
                      +++|.+||-+|+ | .|..++.+++.-..+|+++ .++..++.+++.    +..    .+. ...+..+           
T Consensus       148 ~~~g~~VlV~Ga~g~iG~~~~q~a~~~Ga~Vi~~-~~~~~~~~~~~l----Ga~----~i~-~~~~~~~-----------  206 (343)
T 3gaz_A          148 VQDGQTVLIQGGGGGVGHVAIQIALARGARVFAT-ARGSDLEYVRDL----GAT----PID-ASREPED-----------  206 (343)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEE-ECHHHHHHHHHH----TSE----EEE-TTSCHHH-----------
T ss_pred             CCCCCEEEEecCCCHHHHHHHHHHHHCCCEEEEE-eCHHHHHHHHHc----CCC----Eec-cCCCHHH-----------
Confidence            568999999994 4 4777777776534479999 888877766542    322    111 1111110           


Q ss_pred             cccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEec
Q 026513          146 EDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISG  195 (237)
Q Consensus       146 ~~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~  195 (237)
                            .+........+|+|+.+..-    ..+....+.|+++|.+++.+
T Consensus       207 ------~~~~~~~~~g~D~vid~~g~----~~~~~~~~~l~~~G~iv~~g  246 (343)
T 3gaz_A          207 ------YAAEHTAGQGFDLVYDTLGG----PVLDASFSAVKRFGHVVSCL  246 (343)
T ss_dssp             ------HHHHHHTTSCEEEEEESSCT----HHHHHHHHHEEEEEEEEESC
T ss_pred             ------HHHHHhcCCCceEEEECCCc----HHHHHHHHHHhcCCeEEEEc
Confidence                  00111223579999976653    34567778999999998753

>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0

Probab=93.89  E-value=0.5  Score=38.51  Aligned_cols=108  Identities=18%  Similarity=0.164  Sum_probs=63.9

Q ss_pred             CCCeEEEEcCcchH---HHHHHHHhCCCeEEEEeCC------------HHHHHHHHHHHHHcCCCCCcceEEeccCcccc
Q 026513           70 GGELFLDYGTGSGI---LGIAAIKFGAAMSVGADID------------PQAIKSAHQNAALNNIGPKKMKLHLVPDRTFT  134 (237)
Q Consensus        70 ~~~~vLDlG~G~G~---~~~~la~~~~~~v~~vD~s------------~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~  134 (237)
                      .|+++|-.|++.|.   ++..+++.| .+|+.+|.+            ...++.+...+...+.     ++.++.+|+.+
T Consensus         9 ~gk~vlVTGas~gIG~~ia~~l~~~G-~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~D~~~   82 (287)
T 3pxx_A            9 QDKVVLVTGGARGQGRSHAVKLAEEG-ADIILFDICHDIETNEYPLATSRDLEEAGLEVEKTGR-----KAYTAEVDVRD   82 (287)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEECCSCCTTSCSCCCCHHHHHHHHHHHHHTTS-----CEEEEECCTTC
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCC-CeEEEEcccccccccccchhhhHHHHHHHHHHHhcCC-----ceEEEEccCCC
Confidence            46789999987763   344455565 459999987            6666666655555442     37788888865


Q ss_pred             ccccccccccccccccccccCCCCCCceeEEEEeCCh---------HHH-----------HHHHHHHhHhcCCCeEEEE
Q 026513          135 ASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILL---------NPL-----------LQLADHIVSYAKPGAVVGI  193 (237)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~---------~~~-----------~~~l~~~~~~L~~gG~lii  193 (237)
                      ..   .+.++++...       ..-++.|++|.|...         ..+           -.+.+.+...++.+|.++.
T Consensus        83 ~~---~v~~~~~~~~-------~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~  151 (287)
T 3pxx_A           83 RA---AVSRELANAV-------AEFGKLDVVVANAGICPLGAHLPVQAFADAFDVDFVGVINTVHAALPYLTSGASIIT  151 (287)
T ss_dssp             HH---HHHHHHHHHH-------HHHSCCCEEEECCCCCCCCTTCCTHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEE
T ss_pred             HH---HHHHHHHHHH-------HHcCCCCEEEECCCcCcccCcCCHHHHHHHhhhhhhhhHHHHHHHHHHhhcCcEEEE
Confidence            32   1222221110       001478999987642         111           1235667777777887776

>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis}

Probab=93.88  E-value=0.093  Score=43.93  Aligned_cols=88  Identities=16%  Similarity=0.098  Sum_probs=57.5

Q ss_pred             ccCCCeEEEEcCcc-hHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccc
Q 026513           68 IKGGELFLDYGTGS-GILGIAAIKF-GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVV  145 (237)
Q Consensus        68 ~~~~~~vLDlG~G~-G~~~~~la~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  145 (237)
                      +++|.+||-.|+|. |.+++.+++. |+ +|++++ ++..++.+++    .|..      .++. | .+           
T Consensus       140 ~~~g~~VlV~GaG~vG~~a~qlak~~Ga-~Vi~~~-~~~~~~~~~~----lGa~------~v~~-d-~~-----------  194 (315)
T 3goh_A          140 LTKQREVLIVGFGAVNNLLTQMLNNAGY-VVDLVS-ASLSQALAAK----RGVR------HLYR-E-PS-----------  194 (315)
T ss_dssp             CCSCCEEEEECCSHHHHHHHHHHHHHTC-EEEEEC-SSCCHHHHHH----HTEE------EEES-S-GG-----------
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCC-EEEEEE-ChhhHHHHHH----cCCC------EEEc-C-HH-----------
Confidence            56899999999964 7777777764 66 899999 8888877765    2422      1221 3 11           


Q ss_pred             cccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEec
Q 026513          146 EDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISG  195 (237)
Q Consensus       146 ~~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~  195 (237)
                               .+  ...+|+|+-...-.    .+....+.|+++|+++..+
T Consensus       195 ---------~v--~~g~Dvv~d~~g~~----~~~~~~~~l~~~G~~v~~g  229 (315)
T 3goh_A          195 ---------QV--TQKYFAIFDAVNSQ----NAAALVPSLKANGHIICIQ  229 (315)
T ss_dssp             ---------GC--CSCEEEEECC-----------TTGGGEEEEEEEEEEC
T ss_pred             ---------Hh--CCCccEEEECCCch----hHHHHHHHhcCCCEEEEEe
Confidence                     12  46899998644222    1255778999999998753

>3swr_A DNA (cytosine-5)-methyltransferase 1; epigenetics, DNA methyltransferase fold, maintenance methyla transferase; HET: DNA SFG MES; 2.49A {Homo sapiens} PDB: 3pta_A* 3pt6_A* 3pt9_A* 4da4_A*

Probab=93.81  E-value=0.088  Score=51.28  Aligned_cols=43  Identities=19%  Similarity=0.039  Sum_probs=37.2

Q ss_pred             CCeEEEEcCcchHHHHHHHHhCC-CeEEEEeCCHHHHHHHHHHH
Q 026513           71 GELFLDYGTGSGILGIAAIKFGA-AMSVGADIDPQAIKSAHQNA  113 (237)
Q Consensus        71 ~~~vLDlG~G~G~~~~~la~~~~-~~v~~vD~s~~~i~~a~~~~  113 (237)
                      ..+++|+.||.|++++.+.+.|. ..+.++|+++.+++..+.|.
T Consensus       540 ~l~~iDLFaG~GGlslGl~~AG~~~vv~avEid~~A~~ty~~N~  583 (1002)
T 3swr_A          540 KLRTLDVFSGCGGLSEGFHQAGISDTLWAIEMWDPAAQAFRLNN  583 (1002)
T ss_dssp             CEEEEEESCTTSHHHHHHHHHTSEEEEEEECSSHHHHHHHHHHC
T ss_pred             CCeEEEeccCccHHHHHHHHCCCCceEEEEECCHHHHHHHHHhC
Confidence            35899999999999999988887 56889999999988877663

>2hwk_A Helicase NSP2; rossman fold, alpha/beta/alpha, multi-domain, hydrolase; 2.45A {Venezuelan equine encephalitis virus}

Probab=93.77  E-value=0.2  Score=41.63  Aligned_cols=58  Identities=19%  Similarity=0.194  Sum_probs=44.7

Q ss_pred             CceeEEEEeCC----hHHHH----------HHHHHHhHhcCCCeEEEEeccCCC--CHHHHHHHHhhcccccee
Q 026513          160 EKYDVVIANIL----LNPLL----------QLADHIVSYAKPGAVVGISGILSE--QLPHIINRYSEFLEDILV  217 (237)
Q Consensus       160 ~~fD~I~~n~~----~~~~~----------~~l~~~~~~L~~gG~liis~~~~~--~~~~~~~~~~~~~~~~~~  217 (237)
                      +++|+|++|+.    .+++.          -++..+..+|+|||.+++..+...  ..+++...+...|..+++
T Consensus       205 ~k~DvV~SDMApn~sGh~yqQC~DHarii~Lal~fA~~vLkPGGtfV~KvyggaDr~se~lv~~LaR~F~~Vr~  278 (320)
T 2hwk_A          205 PKYDIIFVNVRTPYKYHHYQQCEDHAIKLSMLTKKACLHLNPGGTCVSIGYGYADRASESIIGAIARQFKFSRV  278 (320)
T ss_dssp             CCEEEEEEECCCCCCSCHHHHHHHHHHHHHHTHHHHGGGEEEEEEEEEEECCCCSHHHHHHHHHHHTTEEEEEE
T ss_pred             CcCCEEEEcCCCCCCCccccccchHHHHHHHHHHHHHHhcCCCceEEEEEecCCcccHHHHHHHHHHhcceeee
Confidence            67999999885    23311          135677889999999999988766  678888888888877765

>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}

Probab=93.76  E-value=0.33  Score=40.31  Aligned_cols=85  Identities=21%  Similarity=0.151  Sum_probs=54.2

Q ss_pred             CCCeEEEEcCcchH---HHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccc
Q 026513           70 GGELFLDYGTGSGI---LGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVE  146 (237)
Q Consensus        70 ~~~~vLDlG~G~G~---~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  146 (237)
                      .|+++|-.|+++|.   ++..+++.| .+|++++.++..++.+.+.+...+.     ++.++..|+.+..   .+.++++
T Consensus        30 ~gk~vlVTGas~gIG~~la~~l~~~G-~~V~~~~r~~~~~~~~~~~l~~~~~-----~~~~~~~Dv~d~~---~v~~~~~  100 (301)
T 3tjr_A           30 DGRAAVVTGGASGIGLATATEFARRG-ARLVLSDVDQPALEQAVNGLRGQGF-----DAHGVVCDVRHLD---EMVRLAD  100 (301)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHTTC-----CEEEEECCTTCHH---HHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHhcCC-----ceEEEEccCCCHH---HHHHHHH
Confidence            47789999988762   344455565 4699999999988887777766543     3778888887532   1222221


Q ss_pred             ccccccccCCCCCCceeEEEEeCC
Q 026513          147 DLSSHKIRGISQTEKYDVVIANIL  170 (237)
Q Consensus       147 ~~~~~~~~~~~~~~~fD~I~~n~~  170 (237)
                      ...       ..-++.|++|.|..
T Consensus       101 ~~~-------~~~g~id~lvnnAg  117 (301)
T 3tjr_A          101 EAF-------RLLGGVDVVFSNAG  117 (301)
T ss_dssp             HHH-------HHHSSCSEEEECCC
T ss_pred             HHH-------HhCCCCCEEEECCC
Confidence            110       00147899998764

>3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp}

Probab=93.75  E-value=0.51  Score=38.97  Aligned_cols=108  Identities=16%  Similarity=0.084  Sum_probs=61.6

Q ss_pred             CCCeEEEEcCcchH---HHHHHHHhCCCeEEEEeCC--HHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccc
Q 026513           70 GGELFLDYGTGSGI---LGIAAIKFGAAMSVGADID--PQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGV  144 (237)
Q Consensus        70 ~~~~vLDlG~G~G~---~~~~la~~~~~~v~~vD~s--~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~  144 (237)
                      .++++|-.|++.|.   ++..+++.|. +|+.++.+  ....+...+.+...+.     ++.++.+|+.+..   .+..+
T Consensus        48 ~~k~vlVTGas~GIG~aia~~la~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~Dv~d~~---~v~~~  118 (294)
T 3r3s_A           48 KDRKALVTGGDSGIGRAAAIAYAREGA-DVAINYLPAEEEDAQQVKALIEECGR-----KAVLLPGDLSDES---FARSL  118 (294)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEECCGGGHHHHHHHHHHHHHTTC-----CEEECCCCTTSHH---HHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCcchhHHHHHHHHHHHcCC-----cEEEEEecCCCHH---HHHHH
Confidence            47789999977662   3344555654 58888886  3344445554444442     3778889987532   11222


Q ss_pred             ccccccccccCCCCCCceeEEEEeCCh------------HHH-----------HHHHHHHhHhcCCCeEEEE
Q 026513          145 VEDLSSHKIRGISQTEKYDVVIANILL------------NPL-----------LQLADHIVSYAKPGAVVGI  193 (237)
Q Consensus       145 ~~~~~~~~~~~~~~~~~fD~I~~n~~~------------~~~-----------~~~l~~~~~~L~~gG~lii  193 (237)
                      ++...+       .-++.|+++.|...            +.+           -.+.+.+...++.+|.++.
T Consensus       119 ~~~~~~-------~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~Iv~  183 (294)
T 3r3s_A          119 VHKARE-------ALGGLDILALVAGKQTAIPEIKDLTSEQFQQTFAVNVFALFWITQEAIPLLPKGASIIT  183 (294)
T ss_dssp             HHHHHH-------HHTCCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEE
T ss_pred             HHHHHH-------HcCCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCEEEE
Confidence            211100       01478999986541            111           1345667777888887776

>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D

Probab=93.66  E-value=0.084  Score=43.89  Aligned_cols=94  Identities=11%  Similarity=0.086  Sum_probs=59.5

Q ss_pred             ccCCCeEEEEcC--cchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEecc-Ccccccccccccccc
Q 026513           68 IKGGELFLDYGT--GSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVP-DRTFTASMNERVDGV  144 (237)
Q Consensus        68 ~~~~~~vLDlG~--G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~-~d~~~~~~~~~~~~~  144 (237)
                      +++|.+||-.|+  |.|..+..+++....+|+++|.++..++.+++    .+...   -+.... .|..           
T Consensus       123 ~~~g~~vlV~Ga~G~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~----~ga~~---~~~~~~~~~~~-----------  184 (302)
T 1iz0_A          123 ARPGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPLA----LGAEE---AATYAEVPERA-----------  184 (302)
T ss_dssp             CCTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHHHH----TTCSE---EEEGGGHHHHH-----------
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHh----cCCCE---EEECCcchhHH-----------
Confidence            678999999998  34677777776433489999999988777654    23221   011100 1110           


Q ss_pred             ccccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEecc
Q 026513          145 VEDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGI  196 (237)
Q Consensus       145 ~~~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~~  196 (237)
                               ...   ..+|+|+. ...    ..+....+.|+++|+++..+.
T Consensus       185 ---------~~~---~~~d~vid-~g~----~~~~~~~~~l~~~G~~v~~g~  219 (302)
T 1iz0_A          185 ---------KAW---GGLDLVLE-VRG----KEVEESLGLLAHGGRLVYIGA  219 (302)
T ss_dssp             ---------HHT---TSEEEEEE-CSC----TTHHHHHTTEEEEEEEEEC--
T ss_pred             ---------HHh---cCceEEEE-CCH----HHHHHHHHhhccCCEEEEEeC
Confidence                     011   47999998 543    245677889999999987543

>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}

Probab=93.61  E-value=0.41  Score=38.66  Aligned_cols=86  Identities=20%  Similarity=0.256  Sum_probs=53.9

Q ss_pred             CCCeEEEEcC-cch---HHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccc
Q 026513           70 GGELFLDYGT-GSG---ILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVV  145 (237)
Q Consensus        70 ~~~~vLDlG~-G~G---~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  145 (237)
                      .++++|-.|+ |.|   .++..+++.| .+|+.++.++..++.+.+.+...+..    ++.++.+|+.+..   .+..++
T Consensus        21 ~~k~vlITGasg~GIG~~~a~~l~~~G-~~V~~~~r~~~~~~~~~~~l~~~~~~----~~~~~~~Dl~~~~---~v~~~~   92 (266)
T 3o38_A           21 KGKVVLVTAAAGTGIGSTTARRALLEG-ADVVISDYHERRLGETRDQLADLGLG----RVEAVVCDVTSTE---AVDALI   92 (266)
T ss_dssp             TTCEEEESSCSSSSHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHTTCSS----CEEEEECCTTCHH---HHHHHH
T ss_pred             CCCEEEEECCCCCchHHHHHHHHHHCC-CEEEEecCCHHHHHHHHHHHHhcCCC----ceEEEEeCCCCHH---HHHHHH
Confidence            4678999987 555   2444566665 45999999998888777776554323    3788889987532   122222


Q ss_pred             cccccccccCCCCCCceeEEEEeCC
Q 026513          146 EDLSSHKIRGISQTEKYDVVIANIL  170 (237)
Q Consensus       146 ~~~~~~~~~~~~~~~~fD~I~~n~~  170 (237)
                      +...+       .-++.|++|.|..
T Consensus        93 ~~~~~-------~~g~id~li~~Ag  110 (266)
T 3o38_A           93 TQTVE-------KAGRLDVLVNNAG  110 (266)
T ss_dssp             HHHHH-------HHSCCCEEEECCC
T ss_pred             HHHHH-------HhCCCcEEEECCC
Confidence            21100       0147899998764

>4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A

Probab=93.57  E-value=0.35  Score=39.07  Aligned_cols=105  Identities=10%  Similarity=0.085  Sum_probs=62.3

Q ss_pred             CCCeEEEEcCcchH---HHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccc
Q 026513           70 GGELFLDYGTGSGI---LGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVE  146 (237)
Q Consensus        70 ~~~~vLDlG~G~G~---~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  146 (237)
                      .|+++|-.|++.|.   ++..+++.|. +|+.+|.++..++...+.+   +.     ++.++..|+.+..-   +..+++
T Consensus         7 ~gk~~lVTGas~gIG~a~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~---~~-----~~~~~~~Dv~~~~~---v~~~~~   74 (255)
T 4eso_A            7 QGKKAIVIGGTHGMGLATVRRLVEGGA-EVLLTGRNESNIARIREEF---GP-----RVHALRSDIADLNE---IAVLGA   74 (255)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHH---GG-----GEEEEECCTTCHHH---HHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHh---CC-----cceEEEccCCCHHH---HHHHHH
Confidence            47789999987763   3444555654 6999999998877665544   11     37778888764321   111111


Q ss_pred             ccccccccCCCCCCceeEEEEeCCh-----------HHH-----------HHHHHHHhHhcCCCeEEEE
Q 026513          147 DLSSHKIRGISQTEKYDVVIANILL-----------NPL-----------LQLADHIVSYAKPGAVVGI  193 (237)
Q Consensus       147 ~~~~~~~~~~~~~~~fD~I~~n~~~-----------~~~-----------~~~l~~~~~~L~~gG~lii  193 (237)
                      ...       ..-++.|+++.|...           ...           -.+.+.+...++.+|.++.
T Consensus        75 ~~~-------~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~  136 (255)
T 4eso_A           75 AAG-------QTLGAIDLLHINAGVSELEPFDQVSEASYDRQFAVNTKGAFFTVQRLTPLIREGGSIVF  136 (255)
T ss_dssp             HHH-------HHHSSEEEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEE
T ss_pred             HHH-------HHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCEEEE
Confidence            110       002478999987631           111           1235666677777887776

>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli}

Probab=93.53  E-value=0.21  Score=41.33  Aligned_cols=105  Identities=14%  Similarity=0.108  Sum_probs=64.3

Q ss_pred             CCCeEEEEcCcchH---HHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccc
Q 026513           70 GGELFLDYGTGSGI---LGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVE  146 (237)
Q Consensus        70 ~~~~vLDlG~G~G~---~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  146 (237)
                      .|+++|--|.++|.   .+..+++.|+ +|+.+|.+++.++.+.+.+   +.     ++..+.+|+.+..-   ++.+++
T Consensus        28 ~gKvalVTGas~GIG~aiA~~la~~Ga-~V~i~~r~~~~l~~~~~~~---g~-----~~~~~~~Dv~~~~~---v~~~~~   95 (273)
T 4fgs_A           28 NAKIAVITGATSGIGLAAAKRFVAEGA-RVFITGRRKDVLDAAIAEI---GG-----GAVGIQADSANLAE---LDRLYE   95 (273)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHH---CT-----TCEEEECCTTCHHH---HHHHHH
T ss_pred             CCCEEEEeCcCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHc---CC-----CeEEEEecCCCHHH---HHHHHH
Confidence            58899999988883   4445566665 5999999998887655443   32     25566788765321   222222


Q ss_pred             ccccccccCCCCCCceeEEEEeCCh-----------HHH-----------HHHHHHHhHhcCCCeEEEE
Q 026513          147 DLSSHKIRGISQTEKYDVVIANILL-----------NPL-----------LQLADHIVSYAKPGAVVGI  193 (237)
Q Consensus       147 ~~~~~~~~~~~~~~~fD~I~~n~~~-----------~~~-----------~~~l~~~~~~L~~gG~lii  193 (237)
                      ..       ...-++.|+++.|...           +.+           -.+.+.+...++.+|.++.
T Consensus        96 ~~-------~~~~G~iDiLVNNAG~~~~~~~~~~~~e~w~~~~~vNl~g~~~~~~~~~p~m~~~G~IIn  157 (273)
T 4fgs_A           96 KV-------KAEAGRIDVLFVNAGGGSMLPLGEVTEEQYDDTFDRNVKGVLFTVQKALPLLARGSSVVL  157 (273)
T ss_dssp             HH-------HHHHSCEEEEEECCCCCCCCCTTSCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEE
T ss_pred             HH-------HHHcCCCCEEEECCCCCCCCChhhccHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCeEEE
Confidence            21       0012579999987741           111           1235667778888887766

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=93.45  E-value=0.37  Score=42.27  Aligned_cols=96  Identities=17%  Similarity=0.109  Sum_probs=60.8

Q ss_pred             CCeEEEEcCcc-hHHHH-HHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccccc
Q 026513           71 GELFLDYGTGS-GILGI-AAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDL  148 (237)
Q Consensus        71 ~~~vLDlG~G~-G~~~~-~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~  148 (237)
                      +.+|+-+|+|. |.... .|...| ..|+++|.++..++.+++    .+       +.++.+|..+..+-          
T Consensus         4 ~~~viIiG~Gr~G~~va~~L~~~g-~~vvvId~d~~~v~~~~~----~g-------~~vi~GDat~~~~L----------   61 (413)
T 3l9w_A            4 GMRVIIAGFGRFGQITGRLLLSSG-VKMVVLDHDPDHIETLRK----FG-------MKVFYGDATRMDLL----------   61 (413)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTT-CCEEEEECCHHHHHHHHH----TT-------CCCEESCTTCHHHH----------
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCC-CCEEEEECCHHHHHHHHh----CC-------CeEEEcCCCCHHHH----------
Confidence            45799999875 33322 333444 559999999999887763    23       44667887643211          


Q ss_pred             ccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEe
Q 026513          149 SSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGIS  194 (237)
Q Consensus       149 ~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis  194 (237)
                           ... .-..+|+|++..+-......+....+.+.|+..++..
T Consensus        62 -----~~a-gi~~A~~viv~~~~~~~n~~i~~~ar~~~p~~~Iiar  101 (413)
T 3l9w_A           62 -----ESA-GAAKAEVLINAIDDPQTNLQLTEMVKEHFPHLQIIAR  101 (413)
T ss_dssp             -----HHT-TTTTCSEEEECCSSHHHHHHHHHHHHHHCTTCEEEEE
T ss_pred             -----Hhc-CCCccCEEEECCCChHHHHHHHHHHHHhCCCCeEEEE
Confidence                 111 1357899988776554444556666777888877763

>4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A

Probab=93.41  E-value=0.52  Score=41.42  Aligned_cols=112  Identities=17%  Similarity=0.148  Sum_probs=63.3

Q ss_pred             ccCCCeEEEEcC-c-chHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccc------c
Q 026513           68 IKGGELFLDYGT-G-SGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMN------E  139 (237)
Q Consensus        68 ~~~~~~vLDlG~-G-~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~------~  139 (237)
                      +++|++||-.|+ | .|..++.+++....++++++.++..++.+++    .|...   -+.....|..+....      +
T Consensus       218 ~~~g~~VlV~GasG~iG~~a~qla~~~Ga~vi~~~~~~~~~~~~~~----lGa~~---~i~~~~~~~~~~~~~~~~~~~~  290 (447)
T 4a0s_A          218 MKQGDIVLIWGASGGLGSYAIQFVKNGGGIPVAVVSSAQKEAAVRA----LGCDL---VINRAELGITDDIADDPRRVVE  290 (447)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH----TTCCC---EEEHHHHTCCTTGGGCHHHHHH
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHh----cCCCE---EEecccccccccccccccccch
Confidence            568999999997 3 3677777776544578999999988887753    24321   111111111000000      0


Q ss_pred             cccccccccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEecc
Q 026513          140 RVDGVVEDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGI  196 (237)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~~  196 (237)
                      ....+.+     .+.... ...+|+|+.+....    .+......|+++|.+++.+.
T Consensus       291 ~~~~~~~-----~v~~~~-g~g~Dvvid~~G~~----~~~~~~~~l~~~G~iv~~G~  337 (447)
T 4a0s_A          291 TGRKLAK-----LVVEKA-GREPDIVFEHTGRV----TFGLSVIVARRGGTVVTCGS  337 (447)
T ss_dssp             HHHHHHH-----HHHHHH-SSCCSEEEECSCHH----HHHHHHHHSCTTCEEEESCC
T ss_pred             hhhHHHH-----HHHHHh-CCCceEEEECCCch----HHHHHHHHHhcCCEEEEEec
Confidence            0000000     001111 35799999877542    45667788999999998653

>1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A

Probab=93.39  E-value=0.06  Score=45.67  Aligned_cols=38  Identities=13%  Similarity=0.110  Sum_probs=31.1

Q ss_pred             CCceeEEEEeCChH--------------HHHHHHHHHhHhcCCCeEEEEecc
Q 026513          159 TEKYDVVIANILLN--------------PLLQLADHIVSYAKPGAVVGISGI  196 (237)
Q Consensus       159 ~~~fD~I~~n~~~~--------------~~~~~l~~~~~~L~~gG~liis~~  196 (237)
                      ++++|+|+++||+.              .+...+..+.++|+|||.+++..-
T Consensus        56 ~~svDlI~tDPPY~~~~d~~~~~~~~~~~~~~~l~~~~rvLk~~G~i~i~~~  107 (319)
T 1eg2_A           56 DDSVQLIICDPPYNIMLADWDDHMDYIGWAKRWLAEAERVLSPTGSIAIFGG  107 (319)
T ss_dssp             TTCEEEEEECCCSBCCGGGGGTCSSHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             cCCcCEEEECCCCCCCCCCccCHHHHHHHHHHHHHHHHHHcCCCeEEEEEcC
Confidence            56899999999963              345667888999999999999643

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=93.19  E-value=0.98  Score=37.90  Aligned_cols=89  Identities=19%  Similarity=0.137  Sum_probs=59.8

Q ss_pred             CeEEEEcCcc--hHHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccccc
Q 026513           72 ELFLDYGTGS--GILGIAAIKFGAA-MSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDL  148 (237)
Q Consensus        72 ~~vLDlG~G~--G~~~~~la~~~~~-~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~  148 (237)
                      .+|.=||+|.  +.++..+.+.|.. +|++.|.++..++.+++    .+...   ..   ..|..               
T Consensus        34 ~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~~~~~~~a~~----~G~~~---~~---~~~~~---------------   88 (314)
T 3ggo_A           34 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVD----LGIID---EG---TTSIA---------------   88 (314)
T ss_dssp             SEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHH----TTSCS---EE---ESCTT---------------
T ss_pred             CEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECCHHHHHHHHH----CCCcc---hh---cCCHH---------------
Confidence            5799999885  3455566666653 79999999988776653    23321   01   11111               


Q ss_pred             ccccccC-CCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEE
Q 026513          149 SSHKIRG-ISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGI  193 (237)
Q Consensus       149 ~~~~~~~-~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~lii  193 (237)
                            . .  -...|+|+...|.....+++..+...++++..++-
T Consensus        89 ------~~~--~~~aDvVilavp~~~~~~vl~~l~~~l~~~~iv~d  126 (314)
T 3ggo_A           89 ------KVE--DFSPDFVMLSSPVRTFREIAKKLSYILSEDATVTD  126 (314)
T ss_dssp             ------GGG--GGCCSEEEECSCGGGHHHHHHHHHHHSCTTCEEEE
T ss_pred             ------HHh--hccCCEEEEeCCHHHHHHHHHHHhhccCCCcEEEE
Confidence                  1 1  24689999988877778888889999999876553

>4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A

Probab=93.18  E-value=0.44  Score=38.62  Aligned_cols=86  Identities=15%  Similarity=0.042  Sum_probs=53.5

Q ss_pred             CCCeEEEEcCcc--h---HHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccc
Q 026513           70 GGELFLDYGTGS--G---ILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGV  144 (237)
Q Consensus        70 ~~~~vLDlG~G~--G---~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~  144 (237)
                      .|+++|-.|+++  |   .++..+++.|+ +|+.+|.++..++.+.+.+...+-.    ++.+++.|+.+..   .+.++
T Consensus         5 ~gK~alVTGaa~~~GIG~aiA~~la~~Ga-~Vvi~~r~~~~~~~~~~~~~~~~~~----~~~~~~~Dv~~~~---~v~~~   76 (256)
T 4fs3_A            5 ENKTYVIMGIANKRSIAFGVAKVLDQLGA-KLVFTYRKERSRKELEKLLEQLNQP----EAHLYQIDVQSDE---EVING   76 (256)
T ss_dssp             TTCEEEEECCCSTTCHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHHHGGGTCS----SCEEEECCTTCHH---HHHHH
T ss_pred             CCCEEEEECCCCCchHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCC----cEEEEEccCCCHH---HHHHH
Confidence            478999999643  4   24445666765 5999999998888877776654433    2667788876432   12222


Q ss_pred             ccccccccccCCCCCCceeEEEEeCC
Q 026513          145 VEDLSSHKIRGISQTEKYDVVIANIL  170 (237)
Q Consensus       145 ~~~~~~~~~~~~~~~~~fD~I~~n~~  170 (237)
                      ++..       ...-++.|+++.|..
T Consensus        77 ~~~~-------~~~~G~iD~lvnnAg   95 (256)
T 4fs3_A           77 FEQI-------GKDVGNIDGVYHSIA   95 (256)
T ss_dssp             HHHH-------HHHHCCCSEEEECCC
T ss_pred             HHHH-------HHHhCCCCEEEeccc
Confidence            2211       001257899998753

>3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.40A {Sinorhizobium meliloti}

Probab=93.11  E-value=0.49  Score=38.52  Aligned_cols=108  Identities=11%  Similarity=0.039  Sum_probs=61.7

Q ss_pred             CCCeEEEEcCcchH---HHHHHHHhCCCeEEEE-eCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccc
Q 026513           70 GGELFLDYGTGSGI---LGIAAIKFGAAMSVGA-DIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVV  145 (237)
Q Consensus        70 ~~~~vLDlG~G~G~---~~~~la~~~~~~v~~v-D~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  145 (237)
                      .++++|-.|++.|.   ++..+++.|.. |+.+ ..++...+...+.+...+.     ++.++..|+.+..   .+..++
T Consensus        26 ~~k~~lVTGas~GIG~aia~~la~~G~~-Vv~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~Dl~~~~---~v~~~~   96 (267)
T 3u5t_A           26 TNKVAIVTGASRGIGAAIAARLASDGFT-VVINYAGKAAAAEEVAGKIEAAGG-----KALTAQADVSDPA---AVRRLF   96 (267)
T ss_dssp             -CCEEEEESCSSHHHHHHHHHHHHHTCE-EEEEESSCSHHHHHHHHHHHHTTC-----CEEEEECCTTCHH---HHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEcCCCHHHHHHHHHHHHhcCC-----eEEEEEcCCCCHH---HHHHHH
Confidence            47889999987763   44456667665 5555 5566666665555555442     3777788886432   122222


Q ss_pred             cccccccccCCCCCCceeEEEEeCCh-----------HHH-----------HHHHHHHhHhcCCCeEEEE
Q 026513          146 EDLSSHKIRGISQTEKYDVVIANILL-----------NPL-----------LQLADHIVSYAKPGAVVGI  193 (237)
Q Consensus       146 ~~~~~~~~~~~~~~~~fD~I~~n~~~-----------~~~-----------~~~l~~~~~~L~~gG~lii  193 (237)
                      +...       ..-++.|++|.|...           ..+           -.+++.+...++.+|.++.
T Consensus        97 ~~~~-------~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~  159 (267)
T 3u5t_A           97 ATAE-------EAFGGVDVLVNNAGIMPLTTIAETGDAVFDRVIAVNLKGTFNTLREAAQRLRVGGRIIN  159 (267)
T ss_dssp             HHHH-------HHHSCEEEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred             HHHH-------HHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCeEEE
Confidence            2110       001479999987641           111           1235566677777787776

>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti}

Probab=93.05  E-value=0.86  Score=37.13  Aligned_cols=109  Identities=8%  Similarity=0.067  Sum_probs=61.6

Q ss_pred             cCCCeEEEEcCcchH---HHHHHHHhCCCeEEEEeCC-HHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccc
Q 026513           69 KGGELFLDYGTGSGI---LGIAAIKFGAAMSVGADID-PQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGV  144 (237)
Q Consensus        69 ~~~~~vLDlG~G~G~---~~~~la~~~~~~v~~vD~s-~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~  144 (237)
                      -.++++|-.|++.|.   ++..+++.|. +|+.++.+ ....+...+.+...+.     ++.++.+|+.+..   .+.++
T Consensus        29 l~gk~~lVTGas~GIG~aia~~la~~G~-~V~~~~~~~~~~~~~~~~~l~~~~~-----~~~~~~~Dv~d~~---~v~~~   99 (271)
T 3v2g_A           29 LAGKTAFVTGGSRGIGAAIAKRLALEGA-AVALTYVNAAERAQAVVSEIEQAGG-----RAVAIRADNRDAE---AIEQA   99 (271)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTC-----CEEEEECCTTCHH---HHHHH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCCHHHHHHHHHHHHhcCC-----cEEEEECCCCCHH---HHHHH
Confidence            357889999987763   3445556655 47777554 4555555555554442     3777888886532   12222


Q ss_pred             ccccccccccCCCCCCceeEEEEeCCh-----------HHH-----------HHHHHHHhHhcCCCeEEEE
Q 026513          145 VEDLSSHKIRGISQTEKYDVVIANILL-----------NPL-----------LQLADHIVSYAKPGAVVGI  193 (237)
Q Consensus       145 ~~~~~~~~~~~~~~~~~fD~I~~n~~~-----------~~~-----------~~~l~~~~~~L~~gG~lii  193 (237)
                      ++...       ..-++.|++|.|...           ..+           -.+++.+...++.+|.++.
T Consensus       100 ~~~~~-------~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~g~iv~  163 (271)
T 3v2g_A          100 IRETV-------EALGGLDILVNSAGIWHSAPLEETTVADFDEVMAVNFRAPFVAIRSASRHLGDGGRIIT  163 (271)
T ss_dssp             HHHHH-------HHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEE
T ss_pred             HHHHH-------HHcCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEE
Confidence            22110       001478999987631           111           1235666777777777765

>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A*

Probab=93.01  E-value=0.6  Score=38.49  Aligned_cols=108  Identities=23%  Similarity=0.281  Sum_probs=61.0

Q ss_pred             CCCeEEEEcCcchH---HHHHHHHhCCCeEEEEeCCHH-HHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccc
Q 026513           70 GGELFLDYGTGSGI---LGIAAIKFGAAMSVGADIDPQ-AIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVV  145 (237)
Q Consensus        70 ~~~~vLDlG~G~G~---~~~~la~~~~~~v~~vD~s~~-~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  145 (237)
                      .|+++|-.|++.|.   ++..+++.| .+|+.++.+.. ..+.+.+.+...+.     ++.++.+|+.+..   .+.+++
T Consensus        46 ~gk~vlVTGas~GIG~aia~~la~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~-----~~~~~~~Dv~d~~---~v~~~~  116 (291)
T 3ijr_A           46 KGKNVLITGGDSGIGRAVSIAFAKEG-ANIAIAYLDEEGDANETKQYVEKEGV-----KCVLLPGDLSDEQ---HCKDIV  116 (291)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESSCHHHHHHHHHHHHTTTC-----CEEEEESCTTSHH---HHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEeCCchHHHHHHHHHHHhcCC-----cEEEEECCCCCHH---HHHHHH
Confidence            47789999987662   334455565 45888888765 34444444444332     3778888887532   112222


Q ss_pred             cccccccccCCCCCCceeEEEEeCCh------------HHH-----------HHHHHHHhHhcCCCeEEEE
Q 026513          146 EDLSSHKIRGISQTEKYDVVIANILL------------NPL-----------LQLADHIVSYAKPGAVVGI  193 (237)
Q Consensus       146 ~~~~~~~~~~~~~~~~fD~I~~n~~~------------~~~-----------~~~l~~~~~~L~~gG~lii  193 (237)
                      +...       ..-++.|++|.|...            ...           -.+.+.+...++.+|.++.
T Consensus       117 ~~~~-------~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~iv~  180 (291)
T 3ijr_A          117 QETV-------RQLGSLNILVNNVAQQYPQQGLEYITAEQLEKTFRINIFSYFHVTKAALSHLKQGDVIIN  180 (291)
T ss_dssp             HHHH-------HHHSSCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCCTTCEEEE
T ss_pred             HHHH-------HHcCCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCEEEE
Confidence            1110       001478999987421            111           1345667777778887776

>3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A {Saccharomyces cerevisiae}

Probab=92.91  E-value=1.5  Score=36.13  Aligned_cols=88  Identities=14%  Similarity=0.174  Sum_probs=54.8

Q ss_pred             CCCeEEEEcCcchH---HHHHHHHhCC--CeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccc
Q 026513           70 GGELFLDYGTGSGI---LGIAAIKFGA--AMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGV  144 (237)
Q Consensus        70 ~~~~vLDlG~G~G~---~~~~la~~~~--~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~  144 (237)
                      .++++|-.|++.|.   ++..+++.|.  .+|+.++.++..++.+.+.+.......   ++.++.+|+.+..   .+..+
T Consensus        32 ~~k~~lVTGas~GIG~aia~~l~~~G~~~~~V~~~~r~~~~~~~~~~~l~~~~~~~---~~~~~~~Dv~d~~---~v~~~  105 (287)
T 3rku_A           32 AKKTVLITGASAGIGKATALEYLEASNGDMKLILAARRLEKLEELKKTIDQEFPNA---KVHVAQLDITQAE---KIKPF  105 (287)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHCTTC---EEEEEECCTTCGG---GHHHH
T ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCCCceEEEEECCHHHHHHHHHHHHhhCCCC---eEEEEECCCCCHH---HHHHH
Confidence            47789999987763   3344555554  479999999998887777665542111   4778888887532   22222


Q ss_pred             ccccccccccCCCCCCceeEEEEeCC
Q 026513          145 VEDLSSHKIRGISQTEKYDVVIANIL  170 (237)
Q Consensus       145 ~~~~~~~~~~~~~~~~~fD~I~~n~~  170 (237)
                      ++..       ...-++.|++|.|..
T Consensus       106 ~~~~-------~~~~g~iD~lVnnAG  124 (287)
T 3rku_A          106 IENL-------PQEFKDIDILVNNAG  124 (287)
T ss_dssp             HHTS-------CGGGCSCCEEEECCC
T ss_pred             HHHH-------HHhcCCCCEEEECCC
Confidence            2221       011247899998764

>3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A

Probab=92.84  E-value=0.66  Score=37.69  Aligned_cols=108  Identities=12%  Similarity=0.154  Sum_probs=61.3

Q ss_pred             CCCeEEEEcCcchH---HHHHHHHhCCCeEEEEeC-CHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccc
Q 026513           70 GGELFLDYGTGSGI---LGIAAIKFGAAMSVGADI-DPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVV  145 (237)
Q Consensus        70 ~~~~vLDlG~G~G~---~~~~la~~~~~~v~~vD~-s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  145 (237)
                      .++++|-.|++.|.   ++..+++.|. +|+.++. +....+...+.+...+.     ++.++..|+.+..   .+..++
T Consensus        17 ~~k~~lVTGas~gIG~aia~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~Dv~~~~---~v~~~~   87 (270)
T 3is3_A           17 DGKVALVTGSGRGIGAAVAVHLGRLGA-KVVVNYANSTKDAEKVVSEIKALGS-----DAIAIKADIRQVP---EIVKLF   87 (270)
T ss_dssp             TTCEEEESCTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTC-----CEEEEECCTTSHH---HHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCCCHHHHHHHHHHHHhcCC-----cEEEEEcCCCCHH---HHHHHH
Confidence            46789988877663   3444555665 5777665 55556655555555442     3777888887532   122222


Q ss_pred             cccccccccCCCCCCceeEEEEeCCh-----------HHH-----------HHHHHHHhHhcCCCeEEEE
Q 026513          146 EDLSSHKIRGISQTEKYDVVIANILL-----------NPL-----------LQLADHIVSYAKPGAVVGI  193 (237)
Q Consensus       146 ~~~~~~~~~~~~~~~~fD~I~~n~~~-----------~~~-----------~~~l~~~~~~L~~gG~lii  193 (237)
                      +...       ..-++.|++|.|...           ..+           -.+.+.+...++.+|.+++
T Consensus        88 ~~~~-------~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~  150 (270)
T 3is3_A           88 DQAV-------AHFGHLDIAVSNSGVVSFGHLKDVTEEEFDRVFSLNTRGQFFVAREAYRHLTEGGRIVL  150 (270)
T ss_dssp             HHHH-------HHHSCCCEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEE
T ss_pred             HHHH-------HHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCeEEE
Confidence            1110       001468999976541           111           1235667777777887776

>3trk_A Nonstructural polyprotein; hydrolase; 2.40A {Chikungunya virus}

Probab=92.79  E-value=0.17  Score=41.60  Aligned_cols=58  Identities=19%  Similarity=0.272  Sum_probs=40.9

Q ss_pred             CceeEEEEeCC----hHHHH----------HHHHHHhHhcCCCeEEEEecc--CCCCHHHHHHHHhhcccccee
Q 026513          160 EKYDVVIANIL----LNPLL----------QLADHIVSYAKPGAVVGISGI--LSEQLPHIINRYSEFLEDILV  217 (237)
Q Consensus       160 ~~fD~I~~n~~----~~~~~----------~~l~~~~~~L~~gG~liis~~--~~~~~~~~~~~~~~~~~~~~~  217 (237)
                      ++||+||+|..    .|++.          -+-......|+|||.+++.++  ....++.+...+...|...++
T Consensus       210 grYDlVfvNv~TpyR~HHYQQCeDHA~~l~mL~~~al~~L~pGGtlv~~aYGyADR~SE~vV~alARkF~~~rv  283 (324)
T 3trk_A          210 GRYDLVVINIHTPFRIHHYQQCVDHAMKLQMLGGDSLRLLKPGGSLLIRAYGYADRTSERVICVLGRKFRSSRA  283 (324)
T ss_dssp             CCEEEEEEECCCCCCSSHHHHHHHHHHHHHHHHHHGGGGEEEEEEEEEEECCCCSHHHHHHHHHHHTTEEEEEE
T ss_pred             CceeEEEEecCCccccchHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEeecccccchHHHHHHHHhhheeeee
Confidence            79999999986    34443          234567789999999999866  333355666666665666655

>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii}

Probab=92.70  E-value=0.59  Score=39.04  Aligned_cols=95  Identities=14%  Similarity=0.096  Sum_probs=58.5

Q ss_pred             hccCCCeEEEEc-Ccc-hHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCc-cccccccccccc
Q 026513           67 LIKGGELFLDYG-TGS-GILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDR-TFTASMNERVDG  143 (237)
Q Consensus        67 ~~~~~~~vLDlG-~G~-G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d-~~~~~~~~~~~~  143 (237)
                      .+++|.+||-.| +|. |.+++.+++.-..+|++++ ++...+.+++    .|...   -+.....+ +.          
T Consensus       149 ~~~~g~~vlV~Ga~G~vG~~a~q~a~~~Ga~vi~~~-~~~~~~~~~~----lGa~~---~i~~~~~~~~~----------  210 (321)
T 3tqh_A          149 EVKQGDVVLIHAGAGGVGHLAIQLAKQKGTTVITTA-SKRNHAFLKA----LGAEQ---CINYHEEDFLL----------  210 (321)
T ss_dssp             TCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEE-CHHHHHHHHH----HTCSE---EEETTTSCHHH----------
T ss_pred             CCCCCCEEEEEcCCcHHHHHHHHHHHHcCCEEEEEe-ccchHHHHHH----cCCCE---EEeCCCcchhh----------
Confidence            367899999996 554 7888888865334788887 4444555543    35431   11111111 11          


Q ss_pred             cccccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEecc
Q 026513          144 VVEDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGI  196 (237)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~~  196 (237)
                                 ..  -..+|+|+-......    +....+.|+++|.++..+.
T Consensus       211 -----------~~--~~g~D~v~d~~g~~~----~~~~~~~l~~~G~iv~~g~  246 (321)
T 3tqh_A          211 -----------AI--STPVDAVIDLVGGDV----GIQSIDCLKETGCIVSVPT  246 (321)
T ss_dssp             -----------HC--CSCEEEEEESSCHHH----HHHHGGGEEEEEEEEECCS
T ss_pred             -----------hh--ccCCCEEEECCCcHH----HHHHHHhccCCCEEEEeCC
Confidence                       00  147999997664332    2668889999999988643

>3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str}

Probab=92.69  E-value=0.49  Score=38.24  Aligned_cols=84  Identities=12%  Similarity=0.071  Sum_probs=49.4

Q ss_pred             CCCeEEEEcCcchH---HHHHHHHhCCCeEEEE-eCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccc
Q 026513           70 GGELFLDYGTGSGI---LGIAAIKFGAAMSVGA-DIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVV  145 (237)
Q Consensus        70 ~~~~vLDlG~G~G~---~~~~la~~~~~~v~~v-D~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  145 (237)
                      .++++|-.|++.|.   ++..+++.|.. |+.+ +.++...+.+.+.+...+.     ++.++.+|+.+..   .+..++
T Consensus         7 ~~k~vlVTGas~GIG~aia~~la~~G~~-V~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~Dv~~~~---~v~~~~   77 (259)
T 3edm_A            7 TNRTIVVAGAGRDIGRACAIRFAQEGAN-VVLTYNGAAEGAATAVAEIEKLGR-----SALAIKADLTNAA---EVEAAI   77 (259)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEECSSCHHHHHHHHHHHTTTS-----CCEEEECCTTCHH---HHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCE-EEEEcCCCHHHHHHHHHHHHhcCC-----ceEEEEcCCCCHH---HHHHHH
Confidence            47789999987763   34455566654 6666 7777776666666554442     2667788886432   122222


Q ss_pred             cccccccccCCCCCCceeEEEEeC
Q 026513          146 EDLSSHKIRGISQTEKYDVVIANI  169 (237)
Q Consensus       146 ~~~~~~~~~~~~~~~~fD~I~~n~  169 (237)
                      +...+       .-++.|+++.|.
T Consensus        78 ~~~~~-------~~g~id~lv~nA   94 (259)
T 3edm_A           78 SAAAD-------KFGEIHGLVHVA   94 (259)
T ss_dssp             HHHHH-------HHCSEEEEEECC
T ss_pred             HHHHH-------HhCCCCEEEECC
Confidence            21100       014789999876

>3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A*

Probab=92.68  E-value=0.75  Score=37.07  Aligned_cols=109  Identities=11%  Similarity=0.087  Sum_probs=63.6

Q ss_pred             CCCeEEEEcCc--ch---HHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccc
Q 026513           70 GGELFLDYGTG--SG---ILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGV  144 (237)
Q Consensus        70 ~~~~vLDlG~G--~G---~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~  144 (237)
                      .++++|-.|++  +|   .++..+++.|. +|+.++.++...+.+++.....+..    ++.++.+|+.+..   .++++
T Consensus         6 ~~k~vlVTGasg~~GIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~----~~~~~~~D~~~~~---~v~~~   77 (266)
T 3oig_A            6 EGRNIVVMGVANKRSIAWGIARSLHEAGA-RLIFTYAGERLEKSVHELAGTLDRN----DSIILPCDVTNDA---EIETC   77 (266)
T ss_dssp             TTCEEEEECCCSTTSHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHHHHTSSSC----CCEEEECCCSSSH---HHHHH
T ss_pred             CCCEEEEEcCCCCCcHHHHHHHHHHHCCC-EEEEecCchHHHHHHHHHHHhcCCC----CceEEeCCCCCHH---HHHHH
Confidence            46789999976  34   24445556654 5889998876666666555544322    3677788887532   12222


Q ss_pred             ccccccccccCCCCCCceeEEEEeCCh---------------HHH-----------HHHHHHHhHhcCCCeEEEE
Q 026513          145 VEDLSSHKIRGISQTEKYDVVIANILL---------------NPL-----------LQLADHIVSYAKPGAVVGI  193 (237)
Q Consensus       145 ~~~~~~~~~~~~~~~~~fD~I~~n~~~---------------~~~-----------~~~l~~~~~~L~~gG~lii  193 (237)
                      ++...+       .-++.|+++.|...               ...           ..+.+.+...++++|.++.
T Consensus        78 ~~~~~~-------~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~  145 (266)
T 3oig_A           78 FASIKE-------QVGVIHGIAHCIAFANKEELVGEYLNTNRDGFLLAHNISSYSLTAVVKAARPMMTEGGSIVT  145 (266)
T ss_dssp             HHHHHH-------HHSCCCEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEE
T ss_pred             HHHHHH-------HhCCeeEEEEccccccccccccchhhccHHHHHHHHHHhHHHHHHHHHHHHhhcCCCceEEE
Confidence            222100       01478999886531               111           1245667778888888776

>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2

Probab=92.62  E-value=1.1  Score=35.61  Aligned_cols=85  Identities=14%  Similarity=0.169  Sum_probs=52.9

Q ss_pred             CCCeEEEEcCcchH---HHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccc
Q 026513           70 GGELFLDYGTGSGI---LGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVE  146 (237)
Q Consensus        70 ~~~~vLDlG~G~G~---~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  146 (237)
                      .++++|-.|++.|.   ++..+++.| .+|++++.++...+...+.+...+.     ++.++..|+.+..   .+.++++
T Consensus         4 ~~k~vlITGas~gIG~~~a~~l~~~G-~~v~~~~r~~~~~~~~~~~~~~~~~-----~~~~~~~D~~~~~---~~~~~~~   74 (247)
T 3lyl_A            4 NEKVALVTGASRGIGFEVAHALASKG-ATVVGTATSQASAEKFENSMKEKGF-----KARGLVLNISDIE---SIQNFFA   74 (247)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTT-CEEEEEESSHHHHHHHHHHHHHTTC-----CEEEEECCTTCHH---HHHHHHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhcCC-----ceEEEEecCCCHH---HHHHHHH
Confidence            36788888876652   344455565 4699999999888877777666543     3778888886432   1222222


Q ss_pred             ccccccccCCCCCCceeEEEEeCC
Q 026513          147 DLSSHKIRGISQTEKYDVVIANIL  170 (237)
Q Consensus       147 ~~~~~~~~~~~~~~~fD~I~~n~~  170 (237)
                      ...       ...++.|+++.|..
T Consensus        75 ~~~-------~~~~~id~li~~Ag   91 (247)
T 3lyl_A           75 EIK-------AENLAIDILVNNAG   91 (247)
T ss_dssp             HHH-------HTTCCCSEEEECCC
T ss_pred             HHH-------HHcCCCCEEEECCC
Confidence            210       01357899998764

>3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti}

Probab=92.58  E-value=0.4  Score=40.60  Aligned_cols=99  Identities=16%  Similarity=0.057  Sum_probs=56.2

Q ss_pred             cCC-CeEEEE-cCc-chHHHHHHHH-hCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccc
Q 026513           69 KGG-ELFLDY-GTG-SGILGIAAIK-FGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGV  144 (237)
Q Consensus        69 ~~~-~~vLDl-G~G-~G~~~~~la~-~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~  144 (237)
                      .++ .+||-. |+| .|..+..+++ .|+ +|+++|.++..++.+++.    |...   -+.....++.           
T Consensus       162 ~~g~~~vli~gg~g~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~~~~----Ga~~---~~~~~~~~~~-----------  222 (349)
T 3pi7_A          162 QEGEKAFVMTAGASQLCKLIIGLAKEEGF-RPIVTVRRDEQIALLKDI----GAAH---VLNEKAPDFE-----------  222 (349)
T ss_dssp             HHCCSEEEESSTTSHHHHHHHHHHHHHTC-EEEEEESCGGGHHHHHHH----TCSE---EEETTSTTHH-----------
T ss_pred             hCCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHc----CCCE---EEECCcHHHH-----------
Confidence            345 566654 443 3556666665 465 799999999888877642    4321   0111111111           


Q ss_pred             ccccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEecc
Q 026513          145 VEDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGI  196 (237)
Q Consensus       145 ~~~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~~  196 (237)
                       +.     +........+|+|+.+.....    +..+.+.|+++|.+++.+.
T Consensus       223 -~~-----v~~~~~~~g~D~vid~~g~~~----~~~~~~~l~~~G~iv~~G~  264 (349)
T 3pi7_A          223 -AT-----LREVMKAEQPRIFLDAVTGPL----ASAIFNAMPKRARWIIYGR  264 (349)
T ss_dssp             -HH-----HHHHHHHHCCCEEEESSCHHH----HHHHHHHSCTTCEEEECCC
T ss_pred             -HH-----HHHHhcCCCCcEEEECCCChh----HHHHHhhhcCCCEEEEEec
Confidence             00     001111236999997765433    3567788999999998654

>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11

Probab=92.55  E-value=0.097  Score=42.80  Aligned_cols=36  Identities=8%  Similarity=0.074  Sum_probs=30.1

Q ss_pred             CCceeEEEEeCChH-----------------HHHHHHHHHhHhcCCCeEEEEe
Q 026513          159 TEKYDVVIANILLN-----------------PLLQLADHIVSYAKPGAVVGIS  194 (237)
Q Consensus       159 ~~~fD~I~~n~~~~-----------------~~~~~l~~~~~~L~~gG~liis  194 (237)
                      +++||+|+++||+.                 .+...+..+.++|+|+|.+++.
T Consensus        21 ~~~vdlI~~DPPY~~~~~~~d~~~~~~~y~~~~~~~l~~~~~~Lk~~g~i~v~   73 (260)
T 1g60_A           21 NKSVQLAVIDPPYNLSKADWDSFDSHNEFLAFTYRWIDKVLDKLDKDGSLYIF   73 (260)
T ss_dssp             TTCEEEEEECCCCSSCSSGGGCCSSHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             ccccCEEEECCCCCCCcccccccCCHHHHHHHHHHHHHHHHHHhcCCeEEEEE
Confidence            56899999999952                 3456778889999999999987

>3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti}

Probab=92.53  E-value=0.63  Score=37.91  Aligned_cols=84  Identities=13%  Similarity=0.023  Sum_probs=51.9

Q ss_pred             CCeEEEEcCcchH---HHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccc
Q 026513           71 GELFLDYGTGSGI---LGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVED  147 (237)
Q Consensus        71 ~~~vLDlG~G~G~---~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  147 (237)
                      ++++|-.|++.|.   ++..+++.| .+|+.++.++..++.+.+.+...+.     ++.++..|+.+..   .+..+++.
T Consensus         4 ~k~~lVTGas~GIG~aia~~la~~G-~~V~~~~r~~~~~~~~~~~l~~~~~-----~~~~~~~Dv~d~~---~v~~~~~~   74 (264)
T 3tfo_A            4 DKVILITGASGGIGEGIARELGVAG-AKILLGARRQARIEAIATEIRDAGG-----TALAQVLDVTDRH---SVAAFAQA   74 (264)
T ss_dssp             TCEEEESSTTSHHHHHHHHHHHHTT-CEEEEEESSHHHHHHHHHHHHHTTC-----EEEEEECCTTCHH---HHHHHHHH
T ss_pred             CCEEEEeCCccHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHhcCC-----cEEEEEcCCCCHH---HHHHHHHH
Confidence            5688888887663   334455565 4599999999888877777665542     3777788886432   12222211


Q ss_pred             cccccccCCCCCCceeEEEEeCC
Q 026513          148 LSSHKIRGISQTEKYDVVIANIL  170 (237)
Q Consensus       148 ~~~~~~~~~~~~~~fD~I~~n~~  170 (237)
                      ..       ..-++.|++|.|..
T Consensus        75 ~~-------~~~g~iD~lVnnAG   90 (264)
T 3tfo_A           75 AV-------DTWGRIDVLVNNAG   90 (264)
T ss_dssp             HH-------HHHSCCCEEEECCC
T ss_pred             HH-------HHcCCCCEEEECCC
Confidence            10       00147899998763

>3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A*

Probab=92.44  E-value=1.2  Score=35.96  Aligned_cols=86  Identities=15%  Similarity=0.069  Sum_probs=53.0

Q ss_pred             CCCeEEEEcCcchH---HHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHH-cCCCCCcceEEeccCccccccccccccccc
Q 026513           70 GGELFLDYGTGSGI---LGIAAIKFGAAMSVGADIDPQAIKSAHQNAAL-NNIGPKKMKLHLVPDRTFTASMNERVDGVV  145 (237)
Q Consensus        70 ~~~~vLDlG~G~G~---~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~-~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  145 (237)
                      .++++|-.|++.|.   ++..+++.|. +|+.++.++..++.+.+.+.. .+..    ++.++..|+.+..   .+..++
T Consensus         7 ~~k~~lVTGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~----~~~~~~~Dv~~~~---~v~~~~   78 (265)
T 3lf2_A            7 SEAVAVVTGGSSGIGLATVELLLEAGA-AVAFCARDGERLRAAESALRQRFPGA----RLFASVCDVLDAL---QVRAFA   78 (265)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHSTTC----CEEEEECCTTCHH---HHHHHH
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhcCCc----eEEEEeCCCCCHH---HHHHHH
Confidence            47789999987762   3444556654 599999999888877766655 3322    3777788886532   122222


Q ss_pred             cccccccccCCCCCCceeEEEEeCC
Q 026513          146 EDLSSHKIRGISQTEKYDVVIANIL  170 (237)
Q Consensus       146 ~~~~~~~~~~~~~~~~fD~I~~n~~  170 (237)
                      +...+       .-++.|++|.|..
T Consensus        79 ~~~~~-------~~g~id~lvnnAg   96 (265)
T 3lf2_A           79 EACER-------TLGCASILVNNAG   96 (265)
T ss_dssp             HHHHH-------HHCSCSEEEECCC
T ss_pred             HHHHH-------HcCCCCEEEECCC
Confidence            21100       0147899998764

>1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1

Probab=92.44  E-value=0.11  Score=43.66  Aligned_cols=100  Identities=13%  Similarity=0.169  Sum_probs=60.2

Q ss_pred             ccCCC-eEEEEcC--cchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccc
Q 026513           68 IKGGE-LFLDYGT--GSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGV  144 (237)
Q Consensus        68 ~~~~~-~vLDlG~--G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~  144 (237)
                      +++|. +||-.|+  |.|.+++.+++.-..+|++++.+++.++.+++    .|...   -+..  .+...        + 
T Consensus       146 ~~~g~~~VlV~Ga~G~vG~~~~q~a~~~Ga~vi~~~~~~~~~~~~~~----lGa~~---~i~~--~~~~~--------~-  207 (328)
T 1xa0_A          146 LTPERGPVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAEHDYLRV----LGAKE---VLAR--EDVMA--------E-  207 (328)
T ss_dssp             CCGGGCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTCHHHHHH----TTCSE---EEEC--C--------------
T ss_pred             CCCCCceEEEecCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH----cCCcE---EEec--CCcHH--------H-
Confidence            45665 8999997  34777777776533469999999887777754    24321   0111  11000        0 


Q ss_pred             ccccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEeccC
Q 026513          145 VEDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGIL  197 (237)
Q Consensus       145 ~~~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~~~  197 (237)
                             ...... ...+|+|+.+....    .+....+.++++|++++.+..
T Consensus       208 -------~~~~~~-~~~~d~vid~~g~~----~~~~~~~~l~~~G~~v~~G~~  248 (328)
T 1xa0_A          208 -------RIRPLD-KQRWAAAVDPVGGR----TLATVLSRMRYGGAVAVSGLT  248 (328)
T ss_dssp             -----------CC-SCCEEEEEECSTTT----THHHHHHTEEEEEEEEECSCC
T ss_pred             -------HHHHhc-CCcccEEEECCcHH----HHHHHHHhhccCCEEEEEeec
Confidence                   001111 34799999766432    356677899999999986543

>3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444}

Probab=92.42  E-value=0.74  Score=38.53  Aligned_cols=87  Identities=16%  Similarity=0.172  Sum_probs=54.3

Q ss_pred             CCCeEEEEcCcchH---HHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccc
Q 026513           70 GGELFLDYGTGSGI---LGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVE  146 (237)
Q Consensus        70 ~~~~vLDlG~G~G~---~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  146 (237)
                      .+++||-.|+++|.   ++..++..|. +|++++.++..++.+.+.+...+...   ++.++..|+.+..   .+..+++
T Consensus         7 ~~k~vlVTGas~gIG~~la~~l~~~G~-~Vv~~~r~~~~~~~~~~~l~~~~~~~---~~~~~~~Dl~~~~---~v~~~~~   79 (319)
T 3ioy_A            7 AGRTAFVTGGANGVGIGLVRQLLNQGC-KVAIADIRQDSIDKALATLEAEGSGP---EVMGVQLDVASRE---GFKMAAD   79 (319)
T ss_dssp             TTCEEEEETTTSTHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHTCGG---GEEEEECCTTCHH---HHHHHHH
T ss_pred             CCCEEEEcCCchHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCC---eEEEEECCCCCHH---HHHHHHH
Confidence            46789999987663   3444555654 59999999998888777766554321   3777888886532   1122221


Q ss_pred             ccccccccCCCCCCceeEEEEeCC
Q 026513          147 DLSSHKIRGISQTEKYDVVIANIL  170 (237)
Q Consensus       147 ~~~~~~~~~~~~~~~fD~I~~n~~  170 (237)
                      ...       ..-+..|++|.|..
T Consensus        80 ~~~-------~~~g~id~lv~nAg   96 (319)
T 3ioy_A           80 EVE-------ARFGPVSILCNNAG   96 (319)
T ss_dssp             HHH-------HHTCCEEEEEECCC
T ss_pred             HHH-------HhCCCCCEEEECCC
Confidence            110       00257899998764

>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris}

Probab=92.42  E-value=0.65  Score=37.35  Aligned_cols=84  Identities=10%  Similarity=0.029  Sum_probs=54.5

Q ss_pred             CCCeEEEEcCcchH---HHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccc
Q 026513           70 GGELFLDYGTGSGI---LGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVE  146 (237)
Q Consensus        70 ~~~~vLDlG~G~G~---~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  146 (237)
                      .++++|-.|+++|.   ++..+++.|. +|+++|.++..++.+.+.+...+.     ++.++.+|+.+..   .+..+++
T Consensus         6 ~~k~vlVTGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~-----~~~~~~~Dv~~~~---~v~~~~~   76 (252)
T 3h7a_A            6 RNATVAVIGAGDYIGAEIAKKFAAEGF-TVFAGRRNGEKLAPLVAEIEAAGG-----RIVARSLDARNED---EVTAFLN   76 (252)
T ss_dssp             CSCEEEEECCSSHHHHHHHHHHHHTTC-EEEEEESSGGGGHHHHHHHHHTTC-----EEEEEECCTTCHH---HHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCC-----eEEEEECcCCCHH---HHHHHHH
Confidence            46789999988763   3444556655 699999999888877777766542     4788888987532   1222222


Q ss_pred             ccccccccCCCCCCceeEEEEeCC
Q 026513          147 DLSSHKIRGISQTEKYDVVIANIL  170 (237)
Q Consensus       147 ~~~~~~~~~~~~~~~fD~I~~n~~  170 (237)
                      ..       ... ++.|++|.|..
T Consensus        77 ~~-------~~~-g~id~lv~nAg   92 (252)
T 3h7a_A           77 AA-------DAH-APLEVTIFNVG   92 (252)
T ss_dssp             HH-------HHH-SCEEEEEECCC
T ss_pred             HH-------Hhh-CCceEEEECCC
Confidence            11       011 57899998764

>3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A*

Probab=92.31  E-value=1.3  Score=36.53  Aligned_cols=107  Identities=17%  Similarity=0.065  Sum_probs=62.3

Q ss_pred             CCCeEEEEcCcch-----HHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccc
Q 026513           70 GGELFLDYGTGSG-----ILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGV  144 (237)
Q Consensus        70 ~~~~vLDlG~G~G-----~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~  144 (237)
                      .++++|-.|+++|     .++..+++.|. +|+.++.++...+.+++.....+      ++.++.+|+.+..   .+..+
T Consensus        30 ~gk~~lVTGasg~~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~------~~~~~~~Dv~d~~---~v~~~   99 (293)
T 3grk_A           30 QGKRGLILGVANNRSIAWGIAKAAREAGA-ELAFTYQGDALKKRVEPLAEELG------AFVAGHCDVADAA---SIDAV   99 (293)
T ss_dssp             TTCEEEEECCCSSSSHHHHHHHHHHHTTC-EEEEEECSHHHHHHHHHHHHHHT------CEEEEECCTTCHH---HHHHH
T ss_pred             CCCEEEEEcCCCCCcHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHhcC------CceEEECCCCCHH---HHHHH
Confidence            4788999997633     23445556654 58999999766555555444433      2667788886532   12222


Q ss_pred             ccccccccccCCCCCCceeEEEEeCChH---------------HH-----------HHHHHHHhHhcCCCeEEEE
Q 026513          145 VEDLSSHKIRGISQTEKYDVVIANILLN---------------PL-----------LQLADHIVSYAKPGAVVGI  193 (237)
Q Consensus       145 ~~~~~~~~~~~~~~~~~fD~I~~n~~~~---------------~~-----------~~~l~~~~~~L~~gG~lii  193 (237)
                      ++...       ..-++.|++|.|....               .+           -.+.+.+...++.+|.++.
T Consensus       100 ~~~~~-------~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~Iv~  167 (293)
T 3grk_A          100 FETLE-------KKWGKLDFLVHAIGFSDKDELTGRYIDTSEANFTNTMLISVYSLTAVSRRAEKLMADGGSILT  167 (293)
T ss_dssp             HHHHH-------HHTSCCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTCEEEEE
T ss_pred             HHHHH-------HhcCCCCEEEECCccCCcccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCEEEE
Confidence            22210       0024789999876421               01           1235666677777888776

>4hp8_A 2-deoxy-D-gluconate 3-dehydrogenase; enzyme function initiative, EFI, structural genomics, oxidor; HET: NAP; 1.35A {Agrobacterium tumefaciens}

Probab=92.22  E-value=2.2  Score=34.54  Aligned_cols=78  Identities=14%  Similarity=0.099  Sum_probs=48.9

Q ss_pred             CCCeEEEEcCcchH---HHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccc
Q 026513           70 GGELFLDYGTGSGI---LGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVE  146 (237)
Q Consensus        70 ~~~~vLDlG~G~G~---~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  146 (237)
                      .|+++|--|.++|.   .+..+++.|+ +|+.+|.+..  +.+.+.+...+.     ++..+..|+.+...         
T Consensus         8 ~GKvalVTGas~GIG~aiA~~la~~Ga-~Vvi~~r~~~--~~~~~~~~~~g~-----~~~~~~~Dv~d~~~---------   70 (247)
T 4hp8_A            8 EGRKALVTGANTGLGQAIAVGLAAAGA-EVVCAARRAP--DETLDIIAKDGG-----NASALLIDFADPLA---------   70 (247)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSCC--HHHHHHHHHTTC-----CEEEEECCTTSTTT---------
T ss_pred             CCCEEEEeCcCCHHHHHHHHHHHHcCC-EEEEEeCCcH--HHHHHHHHHhCC-----cEEEEEccCCCHHH---------
Confidence            58889999988873   4455666765 4888888753  233344444443     26777888875321         


Q ss_pred             ccccccccCCCCCCceeEEEEeCC
Q 026513          147 DLSSHKIRGISQTEKYDVVIANIL  170 (237)
Q Consensus       147 ~~~~~~~~~~~~~~~fD~I~~n~~  170 (237)
                            .......++.|+++.|..
T Consensus        71 ------v~~~~~~g~iDiLVNNAG   88 (247)
T 4hp8_A           71 ------AKDSFTDAGFDILVNNAG   88 (247)
T ss_dssp             ------TTTSSTTTCCCEEEECCC
T ss_pred             ------HHHHHHhCCCCEEEECCC
Confidence                  112223468999998774

>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A*

Probab=92.22  E-value=0.3  Score=41.72  Aligned_cols=94  Identities=18%  Similarity=0.267  Sum_probs=58.4

Q ss_pred             CCeEEEEcCcc-hHHHHHHHH-hCCCeEEEEeCCH---HHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccc
Q 026513           71 GELFLDYGTGS-GILGIAAIK-FGAAMSVGADIDP---QAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVV  145 (237)
Q Consensus        71 ~~~vLDlG~G~-G~~~~~la~-~~~~~v~~vD~s~---~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  145 (237)
                      |++||-+|+|. |..++.+++ .|. +|+++|.++   +.++.+++    .+..    .+. .. ++.     +      
T Consensus       181 g~~VlV~GaG~vG~~~~q~a~~~Ga-~Vi~~~~~~~~~~~~~~~~~----~ga~----~v~-~~-~~~-----~------  238 (366)
T 2cdc_A          181 CRKVLVVGTGPIGVLFTLLFRTYGL-EVWMANRREPTEVEQTVIEE----TKTN----YYN-SS-NGY-----D------  238 (366)
T ss_dssp             TCEEEEESCHHHHHHHHHHHHHHTC-EEEEEESSCCCHHHHHHHHH----HTCE----EEE-CT-TCS-----H------
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCC-EEEEEeCCccchHHHHHHHH----hCCc----eec-hH-HHH-----H------
Confidence            99999999853 555555554 466 899999998   66666653    2322    111 11 111     0      


Q ss_pred             cccccccccCCCCCCceeEEEEeCChHHHHHHH-HHHhHhcCCCeEEEEeccC
Q 026513          146 EDLSSHKIRGISQTEKYDVVIANILLNPLLQLA-DHIVSYAKPGAVVGISGIL  197 (237)
Q Consensus       146 ~~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l-~~~~~~L~~gG~liis~~~  197 (237)
                            .+.. . ...+|+|+.+....   ..+ +.+.+.|+++|.+++.+..
T Consensus       239 ------~~~~-~-~~~~d~vid~~g~~---~~~~~~~~~~l~~~G~iv~~g~~  280 (366)
T 2cdc_A          239 ------KLKD-S-VGKFDVIIDATGAD---VNILGNVIPLLGRNGVLGLFGFS  280 (366)
T ss_dssp             ------HHHH-H-HCCEEEEEECCCCC---THHHHHHGGGEEEEEEEEECSCC
T ss_pred             ------HHHH-h-CCCCCEEEECCCCh---HHHHHHHHHHHhcCCEEEEEecC
Confidence                  0001 1 25799999876532   134 6678899999999886554

>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5}

Probab=92.22  E-value=0.83  Score=36.85  Aligned_cols=85  Identities=12%  Similarity=0.128  Sum_probs=51.8

Q ss_pred             CCCeEEEEcCcch---HHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccc
Q 026513           70 GGELFLDYGTGSG---ILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVE  146 (237)
Q Consensus        70 ~~~~vLDlG~G~G---~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  146 (237)
                      .++++|-.|++.|   .++..+++.| .+|++++-++..++...+.+...+.     ++.++.+|+.+..   .+..+++
T Consensus        28 ~~k~vlITGas~gIG~~la~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~-----~~~~~~~D~~~~~---~v~~~~~   98 (262)
T 3rkr_A           28 SGQVAVVTGASRGIGAAIARKLGSLG-ARVVLTARDVEKLRAVEREIVAAGG-----EAESHACDLSHSD---AIAAFAT   98 (262)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHTTC-----EEEEEECCTTCHH---HHHHHHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHHhCC-----ceeEEEecCCCHH---HHHHHHH
Confidence            4678888887665   2333444555 4599999999888877777665542     3778888886432   1111211


Q ss_pred             ccccccccCCCCCCceeEEEEeCC
Q 026513          147 DLSSHKIRGISQTEKYDVVIANIL  170 (237)
Q Consensus       147 ~~~~~~~~~~~~~~~fD~I~~n~~  170 (237)
                      ...       ..-++.|++|.|..
T Consensus        99 ~~~-------~~~g~id~lv~~Ag  115 (262)
T 3rkr_A           99 GVL-------AAHGRCDVLVNNAG  115 (262)
T ss_dssp             HHH-------HHHSCCSEEEECCC
T ss_pred             HHH-------HhcCCCCEEEECCC
Confidence            110       00146899998754

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=92.12  E-value=1.9  Score=30.55  Aligned_cols=96  Identities=17%  Similarity=0.095  Sum_probs=51.4

Q ss_pred             CCeEEEEcCcc-hH-HHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccccc
Q 026513           71 GELFLDYGTGS-GI-LGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDL  148 (237)
Q Consensus        71 ~~~vLDlG~G~-G~-~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~  148 (237)
                      +.+|+-+|+|. |. ++..+.+.| .+|+++|.++..++..++.   .+       +.++.+|..+..            
T Consensus         4 ~m~i~IiG~G~iG~~~a~~L~~~g-~~v~~~d~~~~~~~~~~~~---~~-------~~~~~~d~~~~~------------   60 (140)
T 1lss_A            4 GMYIIIAGIGRVGYTLAKSLSEKG-HDIVLIDIDKDICKKASAE---ID-------ALVINGDCTKIK------------   60 (140)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHH---CS-------SEEEESCTTSHH------------
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCC-CeEEEEECCHHHHHHHHHh---cC-------cEEEEcCCCCHH------------
Confidence            45788888864 32 222333444 5699999999876654422   12       223445543210            


Q ss_pred             ccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEe
Q 026513          149 SSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGIS  194 (237)
Q Consensus       149 ~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis  194 (237)
                         .+... .-..+|+|++..+.......+..+.+.+.++ .+++.
T Consensus        61 ---~l~~~-~~~~~d~vi~~~~~~~~~~~~~~~~~~~~~~-~ii~~  101 (140)
T 1lss_A           61 ---TLEDA-GIEDADMYIAVTGKEEVNLMSSLLAKSYGIN-KTIAR  101 (140)
T ss_dssp             ---HHHHT-TTTTCSEEEECCSCHHHHHHHHHHHHHTTCC-CEEEE
T ss_pred             ---HHHHc-CcccCCEEEEeeCCchHHHHHHHHHHHcCCC-EEEEE
Confidence               00001 1246899998776554444455556667775 44443

>3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei}

Probab=92.09  E-value=0.82  Score=37.25  Aligned_cols=85  Identities=16%  Similarity=0.180  Sum_probs=51.7

Q ss_pred             CCCeEEEEcCcchH---HHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccc
Q 026513           70 GGELFLDYGTGSGI---LGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVE  146 (237)
Q Consensus        70 ~~~~vLDlG~G~G~---~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  146 (237)
                      .++++|-.|++.|.   ++..+++.|. +|++++.++..++...+.+...+..     +.++..|+.+..   .+..+++
T Consensus        27 ~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~-----~~~~~~Dv~d~~---~v~~~~~   97 (270)
T 3ftp_A           27 DKQVAIVTGASRGIGRAIALELARRGA-MVIGTATTEAGAEGIGAAFKQAGLE-----GRGAVLNVNDAT---AVDALVE   97 (270)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHHHHTCC-----CEEEECCTTCHH---HHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCc-----EEEEEEeCCCHH---HHHHHHH
Confidence            46788888876652   3344555655 6999999998888777766655533     556677876432   1222222


Q ss_pred             ccccccccCCCCCCceeEEEEeCC
Q 026513          147 DLSSHKIRGISQTEKYDVVIANIL  170 (237)
Q Consensus       147 ~~~~~~~~~~~~~~~fD~I~~n~~  170 (237)
                      ...       ..-++.|++|.|..
T Consensus        98 ~~~-------~~~g~iD~lvnnAg  114 (270)
T 3ftp_A           98 STL-------KEFGALNVLVNNAG  114 (270)
T ss_dssp             HHH-------HHHSCCCEEEECCC
T ss_pred             HHH-------HHcCCCCEEEECCC
Confidence            110       00147899998764

>4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum}

Probab=92.08  E-value=0.99  Score=36.74  Aligned_cols=85  Identities=19%  Similarity=0.170  Sum_probs=53.6

Q ss_pred             CCCeEEEEcCcchH---HHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccc
Q 026513           70 GGELFLDYGTGSGI---LGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVE  146 (237)
Q Consensus        70 ~~~~vLDlG~G~G~---~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  146 (237)
                      .|+++|-.|++.|.   ++..+++.|. +|+.++.++..++.+.+.+...+.     ++.++.+|+.+..   .+.++++
T Consensus        25 ~gk~~lVTGas~gIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~l~~~~~-----~~~~~~~Dv~d~~---~v~~~~~   95 (271)
T 4ibo_A           25 GGRTALVTGSSRGLGRAMAEGLAVAGA-RILINGTDPSRVAQTVQEFRNVGH-----DAEAVAFDVTSES---EIIEAFA   95 (271)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEECCSCHHHHHHHHHHHHHTTC-----CEEECCCCTTCHH---HHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCC-----ceEEEEcCCCCHH---HHHHHHH
Confidence            47788888876662   3444555654 699999999888877776665543     3778888987532   1222222


Q ss_pred             ccccccccCCCCCCceeEEEEeCC
Q 026513          147 DLSSHKIRGISQTEKYDVVIANIL  170 (237)
Q Consensus       147 ~~~~~~~~~~~~~~~fD~I~~n~~  170 (237)
                      ...       ..-++.|+++.|..
T Consensus        96 ~~~-------~~~g~iD~lv~nAg  112 (271)
T 4ibo_A           96 RLD-------EQGIDVDILVNNAG  112 (271)
T ss_dssp             HHH-------HHTCCCCEEEECCC
T ss_pred             HHH-------HHCCCCCEEEECCC
Confidence            210       01247899998764

>3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis}

Probab=92.05  E-value=1.5  Score=35.41  Aligned_cols=83  Identities=19%  Similarity=0.189  Sum_probs=51.6

Q ss_pred             CCCeEEEEcCcchH---HHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccc
Q 026513           70 GGELFLDYGTGSGI---LGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVE  146 (237)
Q Consensus        70 ~~~~vLDlG~G~G~---~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  146 (237)
                      .++++|-.|++.|.   ++..+++.| .+|+.+|.++..++.+.+.+...+...   .+.++..|..+..   .+.++++
T Consensus         9 ~~k~~lVTGas~gIG~aia~~l~~~G-~~V~~~~r~~~~~~~~~~~l~~~~~~~---~~~~~~~D~~~~~---~~~~~~~   81 (267)
T 3t4x_A            9 KGKTALVTGSTAGIGKAIATSLVAEG-ANVLINGRREENVNETIKEIRAQYPDA---ILQPVVADLGTEQ---GCQDVIE   81 (267)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTT-CEEEEEESSHHHHHHHHHHHHHHCTTC---EEEEEECCTTSHH---HHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhhCCCc---eEEEEecCCCCHH---HHHHHHH
Confidence            46788888877652   334455565 469999999988877666665543222   4677788876421   1222222


Q ss_pred             ccccccccCCCCCCceeEEEEeCC
Q 026513          147 DLSSHKIRGISQTEKYDVVIANIL  170 (237)
Q Consensus       147 ~~~~~~~~~~~~~~~fD~I~~n~~  170 (237)
                      .           -++.|+++.|..
T Consensus        82 ~-----------~g~id~lv~nAg   94 (267)
T 3t4x_A           82 K-----------YPKVDILINNLG   94 (267)
T ss_dssp             H-----------CCCCSEEEECCC
T ss_pred             h-----------cCCCCEEEECCC
Confidence            1           247899998764

>2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens}

Probab=92.01  E-value=0.36  Score=41.38  Aligned_cols=99  Identities=14%  Similarity=0.060  Sum_probs=58.0

Q ss_pred             ccCCCeEEEEc-Cc-chHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccc
Q 026513           68 IKGGELFLDYG-TG-SGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVV  145 (237)
Q Consensus        68 ~~~~~~vLDlG-~G-~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  145 (237)
                      +++|.+||-.| +| .|..++.+++.-..+|++++ ++..++.++    ..|...   -+.....++.            
T Consensus       181 ~~~g~~VlV~Ga~G~vG~~~~qla~~~Ga~Vi~~~-~~~~~~~~~----~lGa~~---v~~~~~~~~~------------  240 (375)
T 2vn8_A          181 NCTGKRVLILGASGGVGTFAIQVMKAWDAHVTAVC-SQDASELVR----KLGADD---VIDYKSGSVE------------  240 (375)
T ss_dssp             TCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEE-CGGGHHHHH----HTTCSE---EEETTSSCHH------------
T ss_pred             cCCCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEe-ChHHHHHHH----HcCCCE---EEECCchHHH------------
Confidence            56789999999 44 47777777765334799998 666655553    334321   0111111111            


Q ss_pred             cccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEecc
Q 026513          146 EDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGI  196 (237)
Q Consensus       146 ~~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~~  196 (237)
                      +.        +.....+|+|+.+.....  ..+....+.|+++|.++..+.
T Consensus       241 ~~--------~~~~~g~D~vid~~g~~~--~~~~~~~~~l~~~G~iv~~g~  281 (375)
T 2vn8_A          241 EQ--------LKSLKPFDFILDNVGGST--ETWAPDFLKKWSGATYVTLVT  281 (375)
T ss_dssp             HH--------HHTSCCBSEEEESSCTTH--HHHGGGGBCSSSCCEEEESCC
T ss_pred             HH--------HhhcCCCCEEEECCCChh--hhhHHHHHhhcCCcEEEEeCC
Confidence            00        011247999997664331  123556778999999988654

>4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis}

Probab=91.87  E-value=0.89  Score=36.81  Aligned_cols=85  Identities=19%  Similarity=0.132  Sum_probs=52.2

Q ss_pred             CCCeEEEEcCcchH---HHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHH-cCCCCCcceEEeccCccccccccccccccc
Q 026513           70 GGELFLDYGTGSGI---LGIAAIKFGAAMSVGADIDPQAIKSAHQNAAL-NNIGPKKMKLHLVPDRTFTASMNERVDGVV  145 (237)
Q Consensus        70 ~~~~vLDlG~G~G~---~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~-~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  145 (237)
                      .++++|-.|++.|.   ++..+++.|. +|+.++.++..++.+.+.+.. .+.     ++.++..|+.+..   .+..++
T Consensus        19 ~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~-----~~~~~~~Dv~~~~---~v~~~~   89 (266)
T 4egf_A           19 DGKRALITGATKGIGADIARAFAAAGA-RLVLSGRDVSELDAARRALGEQFGT-----DVHTVAIDLAEPD---APAELA   89 (266)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHHCC-----CEEEEECCTTSTT---HHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhcCC-----cEEEEEecCCCHH---HHHHHH
Confidence            46788888877662   3444555654 599999999888777666654 232     3778888887532   112222


Q ss_pred             cccccccccCCCCCCceeEEEEeCC
Q 026513          146 EDLSSHKIRGISQTEKYDVVIANIL  170 (237)
Q Consensus       146 ~~~~~~~~~~~~~~~~fD~I~~n~~  170 (237)
                      +...+       .-++.|++|.|..
T Consensus        90 ~~~~~-------~~g~id~lv~nAg  107 (266)
T 4egf_A           90 RRAAE-------AFGGLDVLVNNAG  107 (266)
T ss_dssp             HHHHH-------HHTSCSEEEEECC
T ss_pred             HHHHH-------HcCCCCEEEECCC
Confidence            11100       0147899998764

>3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A*

Probab=91.86  E-value=0.46  Score=40.70  Aligned_cols=98  Identities=9%  Similarity=0.118  Sum_probs=58.0

Q ss_pred             cCCCeEEEEcCc--chHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccc
Q 026513           69 KGGELFLDYGTG--SGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVE  146 (237)
Q Consensus        69 ~~~~~vLDlG~G--~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  146 (237)
                      .+|.+||-.|++  .|.+++.+++.-..+|+++. ++..++.+++    .|...   -+.....|+.+            
T Consensus       163 ~~g~~VlV~Ga~G~vG~~a~qla~~~Ga~Vi~~~-~~~~~~~~~~----lGa~~---vi~~~~~~~~~------------  222 (371)
T 3gqv_A          163 SKPVYVLVYGGSTATATVTMQMLRLSGYIPIATC-SPHNFDLAKS----RGAEE---VFDYRAPNLAQ------------  222 (371)
T ss_dssp             SSCCEEEEESTTSHHHHHHHHHHHHTTCEEEEEE-CGGGHHHHHH----TTCSE---EEETTSTTHHH------------
T ss_pred             CCCcEEEEECCCcHHHHHHHHHHHHCCCEEEEEe-CHHHHHHHHH----cCCcE---EEECCCchHHH------------
Confidence            678999999983  57888888875334788875 7777666653    34321   11111112110            


Q ss_pred             ccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhc-CCCeEEEEec
Q 026513          147 DLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYA-KPGAVVGISG  195 (237)
Q Consensus       147 ~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L-~~gG~liis~  195 (237)
                           .+.... ++.+|+|+-.....   ..+..+.+.| +++|+++..+
T Consensus       223 -----~v~~~t-~g~~d~v~d~~g~~---~~~~~~~~~l~~~~G~iv~~g  263 (371)
T 3gqv_A          223 -----TIRTYT-KNNLRYALDCITNV---ESTTFCFAAIGRAGGHYVSLN  263 (371)
T ss_dssp             -----HHHHHT-TTCCCEEEESSCSH---HHHHHHHHHSCTTCEEEEESS
T ss_pred             -----HHHHHc-cCCccEEEECCCch---HHHHHHHHHhhcCCCEEEEEe
Confidence                 011112 23599999765432   2345566777 6999998754

>1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1,mitochondrial; oxidoreductase, thioester reduction, fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2 c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A

Probab=91.86  E-value=0.29  Score=41.68  Aligned_cols=104  Identities=10%  Similarity=0.007  Sum_probs=56.1

Q ss_pred             ccCC-CeEEEEcC-c-chHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEecc---Ccccccccccc
Q 026513           68 IKGG-ELFLDYGT-G-SGILGIAAIKF-GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVP---DRTFTASMNER  140 (237)
Q Consensus        68 ~~~~-~~vLDlG~-G-~G~~~~~la~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~---~d~~~~~~~~~  140 (237)
                      +++| .+||-.|+ | .|.+++.+++. |. +++++..++..++..++.++..|...   -+....   .|+.       
T Consensus       164 ~~~g~~~VlV~Ga~G~vG~~aiqlak~~Ga-~vi~~~~~~~~~~~~~~~~~~lGa~~---vi~~~~~~~~~~~-------  232 (364)
T 1gu7_A          164 LTPGKDWFIQNGGTSAVGKYASQIGKLLNF-NSISVIRDRPNLDEVVASLKELGATQ---VITEDQNNSREFG-------  232 (364)
T ss_dssp             CCTTTCEEEESCTTSHHHHHHHHHHHHHTC-EEEEEECCCTTHHHHHHHHHHHTCSE---EEEHHHHHCGGGH-------
T ss_pred             cCCCCcEEEECCCCcHHHHHHHHHHHHCCC-EEEEEecCccccHHHHHHHHhcCCeE---EEecCccchHHHH-------
Confidence            5678 99999997 4 47778877764 55 57777655433111112223334331   011110   1111       


Q ss_pred             ccccccccccccccCCC--CCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEecc
Q 026513          141 VDGVVEDLSSHKIRGIS--QTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGI  196 (237)
Q Consensus       141 ~~~~~~~~~~~~~~~~~--~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~~  196 (237)
                           +.     +....  ....+|+|+-......   .. ...+.|+++|.+++.+.
T Consensus       233 -----~~-----i~~~t~~~~~g~Dvvid~~G~~~---~~-~~~~~l~~~G~~v~~g~  276 (364)
T 1gu7_A          233 -----PT-----IKEWIKQSGGEAKLALNCVGGKS---ST-GIARKLNNNGLMLTYGG  276 (364)
T ss_dssp             -----HH-----HHHHHHHHTCCEEEEEESSCHHH---HH-HHHHTSCTTCEEEECCC
T ss_pred             -----HH-----HHHHhhccCCCceEEEECCCchh---HH-HHHHHhccCCEEEEecC
Confidence                 00     00111  1347999997664332   22 45689999999988654

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=91.83  E-value=1.6  Score=34.18  Aligned_cols=93  Identities=11%  Similarity=-0.054  Sum_probs=55.9

Q ss_pred             eEEEEcCcchHHHHHHH----HhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccccc
Q 026513           73 LFLDYGTGSGILGIAAI----KFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDL  148 (237)
Q Consensus        73 ~vLDlG~G~G~~~~~la----~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~  148 (237)
                      +|+-+|+|  .++..++    ..| ..|+++|.+++.++...+.   .+       +.++.+|..+...-          
T Consensus         2 ~iiIiG~G--~~G~~la~~L~~~g-~~v~vid~~~~~~~~l~~~---~~-------~~~i~gd~~~~~~l----------   58 (218)
T 3l4b_C            2 KVIIIGGE--TTAYYLARSMLSRK-YGVVIINKDRELCEEFAKK---LK-------ATIIHGDGSHKEIL----------   58 (218)
T ss_dssp             CEEEECCH--HHHHHHHHHHHHTT-CCEEEEESCHHHHHHHHHH---SS-------SEEEESCTTSHHHH----------
T ss_pred             EEEEECCC--HHHHHHHHHHHhCC-CeEEEEECCHHHHHHHHHH---cC-------CeEEEcCCCCHHHH----------
Confidence            46777764  4444443    344 4699999999887654322   12       44667877642110          


Q ss_pred             ccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEe
Q 026513          149 SSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGIS  194 (237)
Q Consensus       149 ~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis  194 (237)
                           ... .-..+|+|++..+-+....++....+.+.+...++..
T Consensus        59 -----~~a-~i~~ad~vi~~~~~d~~n~~~~~~a~~~~~~~~iia~   98 (218)
T 3l4b_C           59 -----RDA-EVSKNDVVVILTPRDEVNLFIAQLVMKDFGVKRVVSL   98 (218)
T ss_dssp             -----HHH-TCCTTCEEEECCSCHHHHHHHHHHHHHTSCCCEEEEC
T ss_pred             -----Hhc-CcccCCEEEEecCCcHHHHHHHHHHHHHcCCCeEEEE
Confidence                 011 1247899998776665555566666666677777663

>4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum}

Probab=91.76  E-value=0.67  Score=37.90  Aligned_cols=85  Identities=15%  Similarity=0.159  Sum_probs=52.7

Q ss_pred             cCCCeEEEEcCcchH---HHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccc
Q 026513           69 KGGELFLDYGTGSGI---LGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVV  145 (237)
Q Consensus        69 ~~~~~vLDlG~G~G~---~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  145 (237)
                      -.|+++|-.|++.|.   ++..+++.|. +|+.+|.++..++.+.+.+...+.     ++.++.+|+.+..   .+..++
T Consensus        31 l~gk~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~-----~~~~~~~Dv~~~~---~~~~~~  101 (275)
T 4imr_A           31 LRGRTALVTGSSRGIGAAIAEGLAGAGA-HVILHGVKPGSTAAVQQRIIASGG-----TAQELAGDLSEAG---AGTDLI  101 (275)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSTTTTHHHHHHHHHTTC-----CEEEEECCTTSTT---HHHHHH
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHhcCC-----eEEEEEecCCCHH---HHHHHH
Confidence            357889988877662   3444555655 699999998887777666665442     3777888876432   111222


Q ss_pred             cccccccccCCCCCCceeEEEEeCC
Q 026513          146 EDLSSHKIRGISQTEKYDVVIANIL  170 (237)
Q Consensus       146 ~~~~~~~~~~~~~~~~fD~I~~n~~  170 (237)
                      +..        ...++.|++|.|..
T Consensus       102 ~~~--------~~~g~iD~lvnnAg  118 (275)
T 4imr_A          102 ERA--------EAIAPVDILVINAS  118 (275)
T ss_dssp             HHH--------HHHSCCCEEEECCC
T ss_pred             HHH--------HHhCCCCEEEECCC
Confidence            111        00147899998764

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=91.68  E-value=0.74  Score=34.04  Aligned_cols=100  Identities=17%  Similarity=0.036  Sum_probs=54.5

Q ss_pred             cCCCeEEEEcCcc-hHHHH-HHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccc
Q 026513           69 KGGELFLDYGTGS-GILGI-AAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVE  146 (237)
Q Consensus        69 ~~~~~vLDlG~G~-G~~~~-~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  146 (237)
                      .++.+|+-+|+|. |.... .+...| .+|+++|.++..++.++.   ..+       +.++.+|..+..          
T Consensus        17 ~~~~~v~IiG~G~iG~~la~~L~~~g-~~V~vid~~~~~~~~~~~---~~g-------~~~~~~d~~~~~----------   75 (155)
T 2g1u_A           17 QKSKYIVIFGCGRLGSLIANLASSSG-HSVVVVDKNEYAFHRLNS---EFS-------GFTVVGDAAEFE----------   75 (155)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHTT-CEEEEEESCGGGGGGSCT---TCC-------SEEEESCTTSHH----------
T ss_pred             cCCCcEEEECCCHHHHHHHHHHHhCC-CeEEEEECCHHHHHHHHh---cCC-------CcEEEecCCCHH----------
Confidence            4578999999875 43332 333445 479999999876543321   112       223445543210          


Q ss_pred             ccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEec
Q 026513          147 DLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISG  195 (237)
Q Consensus       147 ~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~  195 (237)
                           .+... ....+|+|++..+-......+..+.+.+.+...++...
T Consensus        76 -----~l~~~-~~~~ad~Vi~~~~~~~~~~~~~~~~~~~~~~~~iv~~~  118 (155)
T 2g1u_A           76 -----TLKEC-GMEKADMVFAFTNDDSTNFFISMNARYMFNVENVIARV  118 (155)
T ss_dssp             -----HHHTT-TGGGCSEEEECSSCHHHHHHHHHHHHHTSCCSEEEEEC
T ss_pred             -----HHHHc-CcccCCEEEEEeCCcHHHHHHHHHHHHHCCCCeEEEEE
Confidence                 00011 12468999987665544444445555556666666643

>3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=91.67  E-value=1.4  Score=35.53  Aligned_cols=86  Identities=20%  Similarity=0.146  Sum_probs=52.7

Q ss_pred             CCCeEEEEcCcchH---HHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccc
Q 026513           70 GGELFLDYGTGSGI---LGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVE  146 (237)
Q Consensus        70 ~~~~vLDlG~G~G~---~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  146 (237)
                      .++++|-.|++.|.   ++..+++.|. +|+.++.++..++.+.+.+...+..    ++.++.+|+.+..   .+..+++
T Consensus         9 ~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~----~~~~~~~Dv~~~~---~v~~~~~   80 (262)
T 3pk0_A            9 QGRSVVVTGGTKGIGRGIATVFARAGA-NVAVAGRSTADIDACVADLDQLGSG----KVIGVQTDVSDRA---QCDALAG   80 (262)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTSSS----CEEEEECCTTSHH---HHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhhCCC----cEEEEEcCCCCHH---HHHHHHH
Confidence            46788888877652   3344555655 6999999998888777666654422    3778888887532   1122221


Q ss_pred             ccccccccCCCCCCceeEEEEeCC
Q 026513          147 DLSSHKIRGISQTEKYDVVIANIL  170 (237)
Q Consensus       147 ~~~~~~~~~~~~~~~fD~I~~n~~  170 (237)
                      ...       ..-++.|++|.|..
T Consensus        81 ~~~-------~~~g~id~lvnnAg   97 (262)
T 3pk0_A           81 RAV-------EEFGGIDVVCANAG   97 (262)
T ss_dssp             HHH-------HHHSCCSEEEECCC
T ss_pred             HHH-------HHhCCCCEEEECCC
Confidence            110       00147899998764

>1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A*

Probab=91.60  E-value=1  Score=36.07  Aligned_cols=58  Identities=17%  Similarity=0.070  Sum_probs=37.6

Q ss_pred             CCCeEEEEcCcchHHHHH----HHH-hCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccc
Q 026513           70 GGELFLDYGTGSGILGIA----AIK-FGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFT  134 (237)
Q Consensus        70 ~~~~vLDlG~G~G~~~~~----la~-~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~  134 (237)
                      .++++|-.|++ |.++..    +++ .| .+|++++-++...+.+.+.+...+.     ++.++.+|+.+
T Consensus         3 ~~k~vlITGas-ggIG~~~a~~L~~~~g-~~V~~~~r~~~~~~~~~~~l~~~~~-----~~~~~~~Dl~~   65 (276)
T 1wma_A            3 GIHVALVTGGN-KGIGLAIVRDLCRLFS-GDVVLTARDVTRGQAAVQQLQAEGL-----SPRFHQLDIDD   65 (276)
T ss_dssp             CCCEEEESSCS-SHHHHHHHHHHHHHSS-SEEEEEESSHHHHHHHHHHHHHTTC-----CCEEEECCTTC
T ss_pred             CCCEEEEeCCC-cHHHHHHHHHHHHhcC-CeEEEEeCChHHHHHHHHHHHhcCC-----eeEEEECCCCC
Confidence            46778877755 444443    444 44 4699999998877766666654432     26677888764

>3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium}

Probab=91.55  E-value=1.6  Score=36.05  Aligned_cols=85  Identities=18%  Similarity=0.220  Sum_probs=50.5

Q ss_pred             CCCeEEEEcCcchH---HHHHHHHhCCCeEEEEeCC------------HHHHHHHHHHHHHcCCCCCcceEEeccCcccc
Q 026513           70 GGELFLDYGTGSGI---LGIAAIKFGAAMSVGADID------------PQAIKSAHQNAALNNIGPKKMKLHLVPDRTFT  134 (237)
Q Consensus        70 ~~~~vLDlG~G~G~---~~~~la~~~~~~v~~vD~s------------~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~  134 (237)
                      .|+++|-.|++.|.   ++..+++.| .+|+++|.+            +..++.+.+.+...+.     ++.++..|+.+
T Consensus        27 ~gk~~lVTGas~GIG~aia~~la~~G-~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~Dv~~  100 (299)
T 3t7c_A           27 EGKVAFITGAARGQGRSHAITLAREG-ADIIAIDVCKQLDGVKLPMSTPDDLAETVRQVEALGR-----RIIASQVDVRD  100 (299)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTT-CEEEEEECCSCCTTCCSCCCCHHHHHHHHHHHHHTTC-----CEEEEECCTTC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEecccccccccccccCHHHHHHHHHHHHhcCC-----ceEEEECCCCC
Confidence            47789999988763   344455565 458899987            6666665555554442     37788888875


Q ss_pred             ccccccccccccccccccccCCCCCCceeEEEEeCC
Q 026513          135 ASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANIL  170 (237)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~  170 (237)
                      ..   .+..+++...       ..-++.|++|.|..
T Consensus       101 ~~---~v~~~~~~~~-------~~~g~iD~lv~nAg  126 (299)
T 3t7c_A          101 FD---AMQAAVDDGV-------TQLGRLDIVLANAA  126 (299)
T ss_dssp             HH---HHHHHHHHHH-------HHHSCCCEEEECCC
T ss_pred             HH---HHHHHHHHHH-------HHhCCCCEEEECCC
Confidence            32   1222222110       00147899998653

>3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid, structural genomics; 1.95A {Mycobacterium thermoresistibile}

Probab=91.51  E-value=1.3  Score=36.95  Aligned_cols=85  Identities=15%  Similarity=0.218  Sum_probs=49.9

Q ss_pred             CCCeEEEEcCcchH---HHHHHHHhCCCeEEEEeCC------------HHHHHHHHHHHHHcCCCCCcceEEeccCcccc
Q 026513           70 GGELFLDYGTGSGI---LGIAAIKFGAAMSVGADID------------PQAIKSAHQNAALNNIGPKKMKLHLVPDRTFT  134 (237)
Q Consensus        70 ~~~~vLDlG~G~G~---~~~~la~~~~~~v~~vD~s------------~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~  134 (237)
                      .|+++|-.|++.|.   ++..+++.| .+|+++|.+            +..++...+.+...+.     ++.++.+|+.+
T Consensus        45 ~gk~~lVTGas~GIG~aia~~la~~G-~~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~Dv~d  118 (317)
T 3oec_A           45 QGKVAFITGAARGQGRTHAVRLAQDG-ADIVAIDLCRQQPNLDYAQGSPEELKETVRLVEEQGR-----RIIARQADVRD  118 (317)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTT-CEEEEEECCCCCTTCCSCCCCHHHHHHHHHHHHHTTC-----CEEEEECCTTC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCC-CeEEEEecccccccccccccCHHHHHHHHHHHHhcCC-----eEEEEECCCCC
Confidence            47788988887763   344455565 458898876            5666655555554442     37788888865


Q ss_pred             ccccccccccccccccccccCCCCCCceeEEEEeCC
Q 026513          135 ASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANIL  170 (237)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~  170 (237)
                      ..   .+..+++...       ..-++.|++|.|..
T Consensus       119 ~~---~v~~~~~~~~-------~~~g~iD~lVnnAg  144 (317)
T 3oec_A          119 LA---SLQAVVDEAL-------AEFGHIDILVSNVG  144 (317)
T ss_dssp             HH---HHHHHHHHHH-------HHHSCCCEEEECCC
T ss_pred             HH---HHHHHHHHHH-------HHcCCCCEEEECCC
Confidence            32   1222222110       00147899998764

>3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti}

Probab=91.50  E-value=0.58  Score=38.43  Aligned_cols=85  Identities=16%  Similarity=0.104  Sum_probs=51.9

Q ss_pred             CCCeEEEEcCcchH---HHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccc
Q 026513           70 GGELFLDYGTGSGI---LGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVE  146 (237)
Q Consensus        70 ~~~~vLDlG~G~G~---~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  146 (237)
                      .++++|-.|++.|.   ++..+++.|. +|+++|.++..++.+.+.+...+.     ++.++.+|+.+..   .+..+++
T Consensus         7 ~gk~vlVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~-----~~~~~~~Dv~~~~---~v~~~~~   77 (280)
T 3tox_A            7 EGKIAIVTGASSGIGRAAALLFAREGA-KVVVTARNGNALAELTDEIAGGGG-----EAAALAGDVGDEA---LHEALVE   77 (280)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTC-EEEECCSCHHHHHHHHHHHTTTTC-----CEEECCCCTTCHH---HHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCC-----cEEEEECCCCCHH---HHHHHHH
Confidence            46788888887662   3444556654 599999999887776666544332     3778888987532   1222221


Q ss_pred             ccccccccCCCCCCceeEEEEeCC
Q 026513          147 DLSSHKIRGISQTEKYDVVIANIL  170 (237)
Q Consensus       147 ~~~~~~~~~~~~~~~fD~I~~n~~  170 (237)
                      ...       ..-++.|++|.|..
T Consensus        78 ~~~-------~~~g~iD~lvnnAg   94 (280)
T 3tox_A           78 LAV-------RRFGGLDTAFNNAG   94 (280)
T ss_dssp             HHH-------HHHSCCCEEEECCC
T ss_pred             HHH-------HHcCCCCEEEECCC
Confidence            110       00147899998763

>3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A

Probab=91.49  E-value=1.4  Score=35.33  Aligned_cols=58  Identities=10%  Similarity=0.148  Sum_probs=38.6

Q ss_pred             CCCeEEEEcCcchH---HHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcc
Q 026513           70 GGELFLDYGTGSGI---LGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRT  132 (237)
Q Consensus        70 ~~~~vLDlG~G~G~---~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~  132 (237)
                      .++++|-.|++.|.   ++..+++.|. +|+.++.++..++.+.+.+...+..    ++.++..|+
T Consensus        11 ~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~----~~~~~~~D~   71 (252)
T 3f1l_A           11 NDRIILVTGASDGIGREAAMTYARYGA-TVILLGRNEEKLRQVASHINEETGR----QPQWFILDL   71 (252)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHHSC----CCEEEECCT
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhhcCC----CceEEEEec
Confidence            47789988977662   3344555655 6999999998887776666544322    155666776

>3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0

Probab=91.45  E-value=1  Score=36.67  Aligned_cols=85  Identities=20%  Similarity=0.169  Sum_probs=51.1

Q ss_pred             CCCeEEEEcCcchH---HHHHHHHhCCCeEEEEeC-------------CHHHHHHHHHHHHHcCCCCCcceEEeccCccc
Q 026513           70 GGELFLDYGTGSGI---LGIAAIKFGAAMSVGADI-------------DPQAIKSAHQNAALNNIGPKKMKLHLVPDRTF  133 (237)
Q Consensus        70 ~~~~vLDlG~G~G~---~~~~la~~~~~~v~~vD~-------------s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~  133 (237)
                      .|+++|-.|++.|.   ++..+++.|. +|+++|.             ++..++.+.+.+...+.     ++.++..|+.
T Consensus        14 ~gk~~lVTGas~gIG~a~a~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~Dv~   87 (280)
T 3pgx_A           14 QGRVAFITGAARGQGRSHAVRLAAEGA-DIIACDICAPVSASVTYAPASPEDLDETARLVEDQGR-----KALTRVLDVR   87 (280)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHTTTC-----CEEEEECCTT
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeccccccccccccccCHHHHHHHHHHHHhcCC-----eEEEEEcCCC
Confidence            47789999987763   3445556654 5889987             67777766666655442     3777788886


Q ss_pred             cccccccccccccccccccccCCCCCCceeEEEEeCC
Q 026513          134 TASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANIL  170 (237)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~  170 (237)
                      +..   .+.++++...       ..-++.|++|.|..
T Consensus        88 ~~~---~v~~~~~~~~-------~~~g~id~lvnnAg  114 (280)
T 3pgx_A           88 DDA---ALRELVADGM-------EQFGRLDVVVANAG  114 (280)
T ss_dssp             CHH---HHHHHHHHHH-------HHHCCCCEEEECCC
T ss_pred             CHH---HHHHHHHHHH-------HHcCCCCEEEECCC
Confidence            432   1222222110       00147899998764

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=91.43  E-value=2.2  Score=31.27  Aligned_cols=98  Identities=13%  Similarity=0.090  Sum_probs=55.8

Q ss_pred             CCeEEEEcCcchHHHHHH----HHhCCCeEEEEeCC-HHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccc
Q 026513           71 GELFLDYGTGSGILGIAA----IKFGAAMSVGADID-PQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVV  145 (237)
Q Consensus        71 ~~~vLDlG~G~G~~~~~l----a~~~~~~v~~vD~s-~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  145 (237)
                      ..+++-+|+|  .++..+    ...| ..|+++|.+ +..++..+... ..+       +.++.+|..+...        
T Consensus         3 ~~~vlI~G~G--~vG~~la~~L~~~g-~~V~vid~~~~~~~~~~~~~~-~~~-------~~~i~gd~~~~~~--------   63 (153)
T 1id1_A            3 KDHFIVCGHS--ILAINTILQLNQRG-QNVTVISNLPEDDIKQLEQRL-GDN-------ADVIPGDSNDSSV--------   63 (153)
T ss_dssp             CSCEEEECCS--HHHHHHHHHHHHTT-CCEEEEECCCHHHHHHHHHHH-CTT-------CEEEESCTTSHHH--------
T ss_pred             CCcEEEECCC--HHHHHHHHHHHHCC-CCEEEEECCChHHHHHHHHhh-cCC-------CeEEEcCCCCHHH--------
Confidence            3468888875  444433    3344 569999997 44444333221 112       5567788753211        


Q ss_pred             cccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEec
Q 026513          146 EDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISG  195 (237)
Q Consensus       146 ~~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~  195 (237)
                             +... .-..+|+|++..+-+.....+....+.+.|...++...
T Consensus        64 -------l~~a-~i~~ad~vi~~~~~d~~n~~~~~~a~~~~~~~~ii~~~  105 (153)
T 1id1_A           64 -------LKKA-GIDRCRAILALSDNDADNAFVVLSAKDMSSDVKTVLAV  105 (153)
T ss_dssp             -------HHHH-TTTTCSEEEECSSCHHHHHHHHHHHHHHTSSSCEEEEC
T ss_pred             -------HHHc-ChhhCCEEEEecCChHHHHHHHHHHHHHCCCCEEEEEE
Confidence                   0010 12478999987765555555566666777777777643

>3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp}

Probab=91.40  E-value=1.1  Score=36.41  Aligned_cols=85  Identities=13%  Similarity=0.144  Sum_probs=50.5

Q ss_pred             CCCeEEEEcCcchH---HHHHHHHhCCCeEEEEeCC------------HHHHHHHHHHHHHcCCCCCcceEEeccCcccc
Q 026513           70 GGELFLDYGTGSGI---LGIAAIKFGAAMSVGADID------------PQAIKSAHQNAALNNIGPKKMKLHLVPDRTFT  134 (237)
Q Consensus        70 ~~~~vLDlG~G~G~---~~~~la~~~~~~v~~vD~s------------~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~  134 (237)
                      .|+++|-.|++.|.   ++..+++.| .+|+++|.+            +..++...+.+...+.     ++.++.+|+.+
T Consensus        12 ~gk~vlVTGas~gIG~~ia~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~D~~~   85 (278)
T 3sx2_A           12 TGKVAFITGAARGQGRAHAVRLAADG-ADIIAVDLCDQIASVPYPLATPEELAATVKLVEDIGS-----RIVARQADVRD   85 (278)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTT-CEEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHHTC-----CEEEEECCTTC
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCC-CeEEEEecccccccccccccchHHHHHHHHHHHhcCC-----eEEEEeCCCCC
Confidence            47789999977662   344455565 458999987            6666665555554442     37788888875


Q ss_pred             ccccccccccccccccccccCCCCCCceeEEEEeCC
Q 026513          135 ASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANIL  170 (237)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~  170 (237)
                      ..   .+..+++...       ..-++.|++|.|..
T Consensus        86 ~~---~v~~~~~~~~-------~~~g~id~lv~nAg  111 (278)
T 3sx2_A           86 RE---SLSAALQAGL-------DELGRLDIVVANAG  111 (278)
T ss_dssp             HH---HHHHHHHHHH-------HHHCCCCEEEECCC
T ss_pred             HH---HHHHHHHHHH-------HHcCCCCEEEECCC
Confidence            32   1222222110       00147899998764

>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*

Probab=91.36  E-value=4.4  Score=34.88  Aligned_cols=106  Identities=13%  Similarity=0.111  Sum_probs=70.1

Q ss_pred             CCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccccc
Q 026513           70 GGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDLS  149 (237)
Q Consensus        70 ~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~  149 (237)
                      -+.+||.++-+-|.++..++  +..+++.+.-|......    +..+++..     .. ...+                 
T Consensus        45 ~~~~~l~~n~~~g~~~~~~~--~~~~~~~~~~~~~~~~~----l~~~~~~~-----~~-~~~~-----------------   95 (381)
T 3dmg_A           45 FGERALDLNPGVGWGSLPLE--GRMAVERLETSRAAFRC----LTASGLQA-----RL-ALPW-----------------   95 (381)
T ss_dssp             CSSEEEESSCTTSTTTGGGB--TTBEEEEEECBHHHHHH----HHHTTCCC-----EE-CCGG-----------------
T ss_pred             hCCcEEEecCCCCccccccC--CCCceEEEeCcHHHHHH----HHHcCCCc-----cc-cCCc-----------------
Confidence            45689999999998776653  23556776555544332    66677652     11 1111                 


Q ss_pred             cccccCCCCCCceeEEEEeCCh----HHHHHHHHHHhHhcCCCeEEEEeccCCCCHHHHHHHHhh
Q 026513          150 SHKIRGISQTEKYDVVIANILL----NPLLQLADHIVSYAKPGAVVGISGILSEQLPHIINRYSE  210 (237)
Q Consensus       150 ~~~~~~~~~~~~fD~I~~n~~~----~~~~~~l~~~~~~L~~gG~liis~~~~~~~~~~~~~~~~  210 (237)
                          ..  +...||+|+.-.|.    ......+..+...|+|||.|++.+-...-...+...+..
T Consensus        96 ----~~--~~~~~d~v~~~~Pk~k~~~~~~~~l~~~~~~l~~g~~i~~~g~~~~g~~~~~~~~~~  154 (381)
T 3dmg_A           96 ----EA--AAGAYDLVVLALPAGRGTAYVQASLVAAARALRMGGRLYLAGDKNKGFERYFKEARA  154 (381)
T ss_dssp             ----GS--CTTCEEEEEEECCGGGCHHHHHHHHHHHHHHEEEEEEEEEEEEGGGTHHHHHHHHHH
T ss_pred             ----cC--CcCCCCEEEEECCcchhHHHHHHHHHHHHHhCCCCCEEEEEEccHHHHHHHHHHHHh
Confidence                01  25689999998884    245667888999999999999987656666666666553

>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2

Probab=91.31  E-value=2.3  Score=34.31  Aligned_cols=84  Identities=17%  Similarity=0.211  Sum_probs=50.1

Q ss_pred             CCCeEEEEcCcchHHHH----HHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccc
Q 026513           70 GGELFLDYGTGSGILGI----AAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVV  145 (237)
Q Consensus        70 ~~~~vLDlG~G~G~~~~----~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  145 (237)
                      .++++|-.|++.| ++.    .+++.| .+|++++.++..++...+.+...+.     ++.++.+|+.+..   .+..++
T Consensus        30 ~~k~vlITGasgg-IG~~la~~L~~~G-~~V~~~~r~~~~~~~~~~~l~~~~~-----~~~~~~~Dl~~~~---~v~~~~   99 (272)
T 1yb1_A           30 TGEIVLITGAGHG-IGRLTAYEFAKLK-SKLVLWDINKHGLEETAAKCKGLGA-----KVHTFVVDCSNRE---DIYSSA   99 (272)
T ss_dssp             TTCEEEEETTTSH-HHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHTTC-----CEEEEECCTTCHH---HHHHHH
T ss_pred             CCCEEEEECCCch-HHHHHHHHHHHCC-CEEEEEEcCHHHHHHHHHHHHhcCC-----eEEEEEeeCCCHH---HHHHHH
Confidence            4678888887655 443    344555 4699999999887766666554432     3777888886432   111121


Q ss_pred             cccccccccCCCCCCceeEEEEeCC
Q 026513          146 EDLSSHKIRGISQTEKYDVVIANIL  170 (237)
Q Consensus       146 ~~~~~~~~~~~~~~~~fD~I~~n~~  170 (237)
                      +...       ..-+.+|++|.+..
T Consensus       100 ~~~~-------~~~g~iD~li~~Ag  117 (272)
T 1yb1_A          100 KKVK-------AEIGDVSILVNNAG  117 (272)
T ss_dssp             HHHH-------HHTCCCSEEEECCC
T ss_pred             HHHH-------HHCCCCcEEEECCC
Confidence            1110       00246899998763

>3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0

Probab=91.29  E-value=0.47  Score=38.93  Aligned_cols=86  Identities=14%  Similarity=0.067  Sum_probs=52.7

Q ss_pred             CCCeEEEEcCcchH---HHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccc-cccccccccc
Q 026513           70 GGELFLDYGTGSGI---LGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTA-SMNERVDGVV  145 (237)
Q Consensus        70 ~~~~vLDlG~G~G~---~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~-~~~~~~~~~~  145 (237)
                      .++++|-.|++.|.   ++..+++.|. +|++++.++...+.+.+.+...+..    ++.++..|+.+. ..   +..++
T Consensus        11 ~~k~vlITGas~GIG~~~a~~L~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~----~~~~~~~Dl~~~~~~---v~~~~   82 (311)
T 3o26_A           11 KRRCAVVTGGNKGIGFEICKQLSSNGI-MVVLTCRDVTKGHEAVEKLKNSNHE----NVVFHQLDVTDPIAT---MSSLA   82 (311)
T ss_dssp             -CCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTTCC----SEEEEECCTTSCHHH---HHHHH
T ss_pred             CCcEEEEecCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCC----ceEEEEccCCCcHHH---HHHHH
Confidence            46788888877662   3344555654 6999999998887777766654433    377888888753 11   11111


Q ss_pred             cccccccccCCCCCCceeEEEEeCC
Q 026513          146 EDLSSHKIRGISQTEKYDVVIANIL  170 (237)
Q Consensus       146 ~~~~~~~~~~~~~~~~fD~I~~n~~  170 (237)
                      +...       ..-++.|++|.|..
T Consensus        83 ~~~~-------~~~g~iD~lv~nAg  100 (311)
T 3o26_A           83 DFIK-------THFGKLDILVNNAG  100 (311)
T ss_dssp             HHHH-------HHHSSCCEEEECCC
T ss_pred             HHHH-------HhCCCCCEEEECCc
Confidence            1100       00147999999875

>4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.50A {Sinorhizobium meliloti}

Probab=91.23  E-value=1  Score=36.87  Aligned_cols=86  Identities=16%  Similarity=0.177  Sum_probs=50.2

Q ss_pred             CCCeEEEEcCcchH---HHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccc
Q 026513           70 GGELFLDYGTGSGI---LGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVE  146 (237)
Q Consensus        70 ~~~~vLDlG~G~G~---~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  146 (237)
                      .|+++|-.|++.|.   ++..+++.|. +|+.+|.++..++.+.+.+...+..    .+.++.+|+.+..   .+.++++
T Consensus        32 ~gk~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~----~~~~~~~Dv~d~~---~v~~~~~  103 (281)
T 4dry_A           32 EGRIALVTGGGTGVGRGIAQALSAEGY-SVVITGRRPDVLDAAAGEIGGRTGN----IVRAVVCDVGDPD---QVAALFA  103 (281)
T ss_dssp             --CEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHHSS----CEEEEECCTTCHH---HHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCC----eEEEEEcCCCCHH---HHHHHHH
Confidence            47788888877652   3334455554 6999999998887766666544322    2567788886532   1222222


Q ss_pred             ccccccccCCCCCCceeEEEEeCC
Q 026513          147 DLSSHKIRGISQTEKYDVVIANIL  170 (237)
Q Consensus       147 ~~~~~~~~~~~~~~~fD~I~~n~~  170 (237)
                      ...+       .-++.|++|.|..
T Consensus       104 ~~~~-------~~g~iD~lvnnAG  120 (281)
T 4dry_A          104 AVRA-------EFARLDLLVNNAG  120 (281)
T ss_dssp             HHHH-------HHSCCSEEEECCC
T ss_pred             HHHH-------HcCCCCEEEECCC
Confidence            1100       0147899998663

>3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti}

Probab=91.22  E-value=1.2  Score=36.53  Aligned_cols=85  Identities=18%  Similarity=0.135  Sum_probs=51.8

Q ss_pred             CCCeEEEEcCcchH---HHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccc
Q 026513           70 GGELFLDYGTGSGI---LGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVE  146 (237)
Q Consensus        70 ~~~~vLDlG~G~G~---~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  146 (237)
                      .++++|-.|++.|.   ++..+++.|. +|+.+|.++..++.+.+.+...+.     ++.++.+|+.+..   .+..+++
T Consensus        27 ~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~l~~~~~-----~~~~~~~Dv~d~~---~v~~~~~   97 (283)
T 3v8b_A           27 PSPVALITGAGSGIGRATALALAADGV-TVGALGRTRTEVEEVADEIVGAGG-----QAIALEADVSDEL---QMRNAVR   97 (283)
T ss_dssp             CCCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHTTTTC-----CEEEEECCTTCHH---HHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCC-----cEEEEEccCCCHH---HHHHHHH
Confidence            46789999987762   3344555654 699999999887776666544332     3777888886532   1222222


Q ss_pred             ccccccccCCCCCCceeEEEEeCC
Q 026513          147 DLSSHKIRGISQTEKYDVVIANIL  170 (237)
Q Consensus       147 ~~~~~~~~~~~~~~~fD~I~~n~~  170 (237)
                      ...       ..-++.|++|.|..
T Consensus        98 ~~~-------~~~g~iD~lVnnAg  114 (283)
T 3v8b_A           98 DLV-------LKFGHLDIVVANAG  114 (283)
T ss_dssp             HHH-------HHHSCCCEEEECCC
T ss_pred             HHH-------HHhCCCCEEEECCC
Confidence            110       00147899998654

>3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} SCOP: c.2.1.0 PDB: 3uwr_A*

Probab=91.22  E-value=1.1  Score=36.59  Aligned_cols=85  Identities=16%  Similarity=0.194  Sum_probs=50.2

Q ss_pred             CCCeEEEEcCcchH---HHHHHHHhCCCeEEEEeCC----------------HHHHHHHHHHHHHcCCCCCcceEEeccC
Q 026513           70 GGELFLDYGTGSGI---LGIAAIKFGAAMSVGADID----------------PQAIKSAHQNAALNNIGPKKMKLHLVPD  130 (237)
Q Consensus        70 ~~~~vLDlG~G~G~---~~~~la~~~~~~v~~vD~s----------------~~~i~~a~~~~~~~~~~~~~~~v~~~~~  130 (237)
                      .|+++|-.|++.|.   ++..+++.| .+|+++|.+                ++.++...+.+...+.     ++.++..
T Consensus        10 ~~k~~lVTGas~gIG~aia~~la~~G-~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~   83 (286)
T 3uve_A           10 EGKVAFVTGAARGQGRSHAVRLAQEG-ADIIAVDICKPIRAGVVDTAIPASTPEDLAETADLVKGHNR-----RIVTAEV   83 (286)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTT-CEEEEEECCSCSBTTBCCCSSCCCCHHHHHHHHHHHHTTTC-----CEEEEEC
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCC-CeEEEEeccccccccccccccccCCHHHHHHHHHHHhhcCC-----ceEEEEc
Confidence            47789999988773   344555665 458999887                5666655555544332     3778888


Q ss_pred             ccccccccccccccccccccccccCCCCCCceeEEEEeCC
Q 026513          131 RTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANIL  170 (237)
Q Consensus       131 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~  170 (237)
                      |+.+..   .+..+++...       ..-++.|++|.|..
T Consensus        84 Dv~~~~---~v~~~~~~~~-------~~~g~id~lv~nAg  113 (286)
T 3uve_A           84 DVRDYD---ALKAAVDSGV-------EQLGRLDIIVANAG  113 (286)
T ss_dssp             CTTCHH---HHHHHHHHHH-------HHHSCCCEEEECCC
T ss_pred             CCCCHH---HHHHHHHHHH-------HHhCCCCEEEECCc
Confidence            887532   1222222110       00147899998753

>4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti}

Probab=91.14  E-value=1.8  Score=35.33  Aligned_cols=85  Identities=13%  Similarity=0.111  Sum_probs=50.8

Q ss_pred             CCCeEEEEcCcchH---HHHHHHHhCCCeEEEEeC-CHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccc
Q 026513           70 GGELFLDYGTGSGI---LGIAAIKFGAAMSVGADI-DPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVV  145 (237)
Q Consensus        70 ~~~~vLDlG~G~G~---~~~~la~~~~~~v~~vD~-s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  145 (237)
                      .++++|-.|++.|.   ++..+++.|. +|+.++. ++..++...+.+...+.     ++.++.+|+.+..   .+..++
T Consensus        28 ~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~Dv~d~~---~v~~~~   98 (280)
T 4da9_A           28 ARPVAIVTGGRRGIGLGIARALAASGF-DIAITGIGDAEGVAPVIAELSGLGA-----RVIFLRADLADLS---SHQATV   98 (280)
T ss_dssp             CCCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCCHHHHHHHHHHHHHTTC-----CEEEEECCTTSGG---GHHHHH
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHHCCC-eEEEEeCCCHHHHHHHHHHHHhcCC-----cEEEEEecCCCHH---HHHHHH
Confidence            46789988987763   3444555654 5888885 77766666666555442     3778888987532   112222


Q ss_pred             cccccccccCCCCCCceeEEEEeCC
Q 026513          146 EDLSSHKIRGISQTEKYDVVIANIL  170 (237)
Q Consensus       146 ~~~~~~~~~~~~~~~~fD~I~~n~~  170 (237)
                      +...       ..-++.|++|.|..
T Consensus        99 ~~~~-------~~~g~iD~lvnnAg  116 (280)
T 4da9_A           99 DAVV-------AEFGRIDCLVNNAG  116 (280)
T ss_dssp             HHHH-------HHHSCCCEEEEECC
T ss_pred             HHHH-------HHcCCCCEEEECCC
Confidence            1110       00147899998764

>3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus subtilis} PDB: 3oic_A*

Probab=90.95  E-value=1.4  Score=35.50  Aligned_cols=85  Identities=14%  Similarity=0.166  Sum_probs=49.8

Q ss_pred             CCCeEEEEcCcchH---HHHHHHHhCCCeEEEE-eCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccc
Q 026513           70 GGELFLDYGTGSGI---LGIAAIKFGAAMSVGA-DIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVV  145 (237)
Q Consensus        70 ~~~~vLDlG~G~G~---~~~~la~~~~~~v~~v-D~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  145 (237)
                      .++++|-.|++.|.   ++..+++.|.. |+.+ +.++..++...+.+...+.     ++.++.+|+.+..   .+.+++
T Consensus         3 ~~k~vlVTGas~gIG~aia~~l~~~G~~-vv~~~~r~~~~~~~~~~~~~~~~~-----~~~~~~~Dv~~~~---~v~~~~   73 (258)
T 3oid_A            3 QNKCALVTGSSRGVGKAAAIRLAENGYN-IVINYARSKKAALETAEEIEKLGV-----KVLVVKANVGQPA---KIKEMF   73 (258)
T ss_dssp             CCCEEEESSCSSHHHHHHHHHHHHTTCE-EEEEESSCHHHHHHHHHHHHTTTC-----CEEEEECCTTCHH---HHHHHH
T ss_pred             CCCEEEEecCCchHHHHHHHHHHHCCCE-EEEEcCCCHHHHHHHHHHHHhcCC-----cEEEEEcCCCCHH---HHHHHH
Confidence            46788888877652   33445556655 5654 8888877776666654442     3778888887532   122222


Q ss_pred             cccccccccCCCCCCceeEEEEeCC
Q 026513          146 EDLSSHKIRGISQTEKYDVVIANIL  170 (237)
Q Consensus       146 ~~~~~~~~~~~~~~~~fD~I~~n~~  170 (237)
                      +...       ..-++.|++|.|..
T Consensus        74 ~~~~-------~~~g~id~lv~nAg   91 (258)
T 3oid_A           74 QQID-------ETFGRLDVFVNNAA   91 (258)
T ss_dssp             HHHH-------HHHSCCCEEEECCC
T ss_pred             HHHH-------HHcCCCCEEEECCC
Confidence            2110       00147899998763

>3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron}

Probab=90.93  E-value=2.1  Score=34.21  Aligned_cols=88  Identities=15%  Similarity=0.167  Sum_probs=53.3

Q ss_pred             CCCeEEEEcCcchH---HHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccc
Q 026513           70 GGELFLDYGTGSGI---LGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVE  146 (237)
Q Consensus        70 ~~~~vLDlG~G~G~---~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  146 (237)
                      .++++|-.|++.|.   ++..+++.|. +|+.++.++..++.+.+.+.......  .++.++..|+.+..   .+..+++
T Consensus         6 ~~k~~lVTGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~---~v~~~~~   79 (250)
T 3nyw_A            6 QKGLAIITGASQGIGAVIAAGLATDGY-RVVLIARSKQNLEKVHDEIMRSNKHV--QEPIVLPLDITDCT---KADTEIK   79 (250)
T ss_dssp             CCCEEEEESTTSHHHHHHHHHHHHHTC-EEEEEESCHHHHHHHHHHHHHHCTTS--CCCEEEECCTTCHH---HHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHhcccc--CcceEEeccCCCHH---HHHHHHH
Confidence            46789989987763   4445566665 69999999988887776665542110  13667788876422   1122221


Q ss_pred             ccccccccCCCCCCceeEEEEeCC
Q 026513          147 DLSSHKIRGISQTEKYDVVIANIL  170 (237)
Q Consensus       147 ~~~~~~~~~~~~~~~fD~I~~n~~  170 (237)
                      ...       ..-++.|++|.|..
T Consensus        80 ~~~-------~~~g~iD~lvnnAg   96 (250)
T 3nyw_A           80 DIH-------QKYGAVDILVNAAA   96 (250)
T ss_dssp             HHH-------HHHCCEEEEEECCC
T ss_pred             HHH-------HhcCCCCEEEECCC
Confidence            110       00147999998764

>3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans}

Probab=90.84  E-value=2.3  Score=34.58  Aligned_cols=88  Identities=16%  Similarity=0.182  Sum_probs=53.7

Q ss_pred             CCCeEEEEcCcchH---HHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccc
Q 026513           70 GGELFLDYGTGSGI---LGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVE  146 (237)
Q Consensus        70 ~~~~vLDlG~G~G~---~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  146 (237)
                      .++++|-.|++.|.   ++..+++.|. +|+.+|.++..++.+.+.+...+...  .++.++.+|+.+..   .+..+++
T Consensus        10 ~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~--~~~~~~~~Dv~~~~---~v~~~~~   83 (281)
T 3svt_A           10 QDRTYLVTGGGSGIGKGVAAGLVAAGA-SVMIVGRNPDKLAGAVQELEALGANG--GAIRYEPTDITNED---ETARAVD   83 (281)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTCCSS--CEEEEEECCTTSHH---HHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhCCCC--ceEEEEeCCCCCHH---HHHHHHH
Confidence            47789999987662   3444555654 59999999988887777766544321  14778888887532   1122222


Q ss_pred             ccccccccCCCCCCceeEEEEeCC
Q 026513          147 DLSSHKIRGISQTEKYDVVIANIL  170 (237)
Q Consensus       147 ~~~~~~~~~~~~~~~fD~I~~n~~  170 (237)
                      ...       ..-++.|+++.|..
T Consensus        84 ~~~-------~~~g~id~lv~nAg  100 (281)
T 3svt_A           84 AVT-------AWHGRLHGVVHCAG  100 (281)
T ss_dssp             HHH-------HHHSCCCEEEECCC
T ss_pred             HHH-------HHcCCCCEEEECCC
Confidence            110       00146899998664

>4ft4_B DNA (cytosine-5)-methyltransferase 1; chromodomain, BAH domain, DNA methyltransferase domain, H3K9 binding, methylation, transferase; HET: DNA MLY SAH; 2.70A {Zea mays} PDB: 4ft2_A* 4fsx_A*

Probab=90.81  E-value=0.22  Score=47.25  Aligned_cols=43  Identities=19%  Similarity=0.126  Sum_probs=35.8

Q ss_pred             CCeEEEEcCcchHHHHHHHHhC------CCeEEEEeCCHHHHHHHHHHH
Q 026513           71 GELFLDYGTGSGILGIAAIKFG------AAMSVGADIDPQAIKSAHQNA  113 (237)
Q Consensus        71 ~~~vLDlG~G~G~~~~~la~~~------~~~v~~vD~s~~~i~~a~~~~  113 (237)
                      ..+|||+.||.|+++.-+.+.|      ..-+.++|+++.+++..+.|.
T Consensus       212 ~ltvIDLFAG~GGls~Gfe~AG~~~~~~f~vv~AvE~d~~A~~Ty~~Nh  260 (784)
T 4ft4_B          212 TATLLDLYSGCGGMSTGLCLGAALSGLKLETRWAVDFNSFACQSLKYNH  260 (784)
T ss_dssp             EEEEEEETCTTSHHHHHHHHHHHHHTEEEEEEEEEESCHHHHHHHHHHC
T ss_pred             CCeEEEeCcCccHHHHHHHHhCcccCCceeEEEEEeCCHHHHHHHHHHC
Confidence            4589999999999988877654      456889999999998888774

>3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A*

Probab=90.74  E-value=1.2  Score=36.73  Aligned_cols=107  Identities=16%  Similarity=0.088  Sum_probs=61.9

Q ss_pred             CCCeEEEEcCcc--h---HHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccc
Q 026513           70 GGELFLDYGTGS--G---ILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGV  144 (237)
Q Consensus        70 ~~~~vLDlG~G~--G---~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~  144 (237)
                      .++++|-.|+++  |   .++..+++.|. +|+.++.++...+.+++.....+      .+.++.+|+.+..   .+..+
T Consensus        29 ~~k~vlVTGasg~~GIG~~ia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~------~~~~~~~Dv~d~~---~v~~~   98 (296)
T 3k31_A           29 EGKKGVIIGVANDKSLAWGIAKAVCAQGA-EVALTYLSETFKKRVDPLAESLG------VKLTVPCDVSDAE---SVDNM   98 (296)
T ss_dssp             TTCEEEEECCCSTTSHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHHHHHHT------CCEEEECCTTCHH---HHHHH
T ss_pred             CCCEEEEEeCCCCCCHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHHHHhcC------CeEEEEcCCCCHH---HHHHH
Confidence            477899999864  3   24445556654 59999999876665555544433      1456778876432   12222


Q ss_pred             ccccccccccCCCCCCceeEEEEeCChH---------------HH-----------HHHHHHHhHhcCCCeEEEE
Q 026513          145 VEDLSSHKIRGISQTEKYDVVIANILLN---------------PL-----------LQLADHIVSYAKPGAVVGI  193 (237)
Q Consensus       145 ~~~~~~~~~~~~~~~~~fD~I~~n~~~~---------------~~-----------~~~l~~~~~~L~~gG~lii  193 (237)
                      ++...+       .-++.|++|.|....               .+           -.+.+.+...++.+|.++.
T Consensus        99 ~~~~~~-------~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~g~IV~  166 (296)
T 3k31_A           99 FKVLAE-------EWGSLDFVVHAVAFSDKNELKGRYVDTSLGNFLTSMHISCYSFTYIASKAEPLMTNGGSILT  166 (296)
T ss_dssp             HHHHHH-------HHSCCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEE
T ss_pred             HHHHHH-------HcCCCCEEEECCCcCCcccccCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCEEEE
Confidence            221100       014789999876321               11           1235666777777888776

>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum}

Probab=90.71  E-value=0.76  Score=37.56  Aligned_cols=85  Identities=19%  Similarity=0.213  Sum_probs=52.5

Q ss_pred             CCCeEEEEcCcchH---HHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccc
Q 026513           70 GGELFLDYGTGSGI---LGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVE  146 (237)
Q Consensus        70 ~~~~vLDlG~G~G~---~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  146 (237)
                      .++++|-.|++.|.   ++..+++.|. +|+.++.++..++...+.+...+.     ++.++.+|+.+..   .+.++++
T Consensus        31 ~gk~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~-----~~~~~~~Dl~d~~---~v~~~~~  101 (276)
T 3r1i_A           31 SGKRALITGASTGIGKKVALAYAEAGA-QVAVAARHSDALQVVADEIAGVGG-----KALPIRCDVTQPD---QVRGMLD  101 (276)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESSGGGGHHHHHHHHHTTC-----CCEEEECCTTCHH---HHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCC-----eEEEEEcCCCCHH---HHHHHHH
Confidence            57889999987662   3444555654 599999998888777766665443     2667788886432   1222222


Q ss_pred             ccccccccCCCCCCceeEEEEeCC
Q 026513          147 DLSSHKIRGISQTEKYDVVIANIL  170 (237)
Q Consensus       147 ~~~~~~~~~~~~~~~fD~I~~n~~  170 (237)
                      ...+       .-++.|++|.|..
T Consensus       102 ~~~~-------~~g~iD~lvnnAg  118 (276)
T 3r1i_A          102 QMTG-------ELGGIDIAVCNAG  118 (276)
T ss_dssp             HHHH-------HHSCCSEEEECCC
T ss_pred             HHHH-------HcCCCCEEEECCC
Confidence            1100       0147899998764

>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=90.63  E-value=0.81  Score=36.99  Aligned_cols=84  Identities=18%  Similarity=0.173  Sum_probs=54.2

Q ss_pred             CCCeEEEEcCcchH---HHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccc
Q 026513           70 GGELFLDYGTGSGI---LGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVE  146 (237)
Q Consensus        70 ~~~~vLDlG~G~G~---~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  146 (237)
                      .++++|-.|++.|.   ++..+++.|. +|+.++.++..++.+.+.+...+.     ++.++.+|+.+..   .+.++++
T Consensus        10 ~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~-----~~~~~~~Dv~~~~---~v~~~~~   80 (264)
T 3ucx_A           10 TDKVVVISGVGPALGTTLARRCAEQGA-DLVLAARTVERLEDVAKQVTDTGR-----RALSVGTDITDDA---QVAHLVD   80 (264)
T ss_dssp             TTCEEEEESCCTTHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTC-----CEEEEECCTTCHH---HHHHHHH
T ss_pred             CCcEEEEECCCcHHHHHHHHHHHHCcC-EEEEEeCCHHHHHHHHHHHHhcCC-----cEEEEEcCCCCHH---HHHHHHH
Confidence            47789999987763   3445556654 599999999888887777765543     3778888887532   1222222


Q ss_pred             ccccccccCCCCCCceeEEEEeC
Q 026513          147 DLSSHKIRGISQTEKYDVVIANI  169 (237)
Q Consensus       147 ~~~~~~~~~~~~~~~fD~I~~n~  169 (237)
                      ...       ..-++.|++|.|.
T Consensus        81 ~~~-------~~~g~id~lv~nA   96 (264)
T 3ucx_A           81 ETM-------KAYGRVDVVINNA   96 (264)
T ss_dssp             HHH-------HHTSCCSEEEECC
T ss_pred             HHH-------HHcCCCcEEEECC
Confidence            110       0024789999876

>1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural genomics, protein structure initiative, PSI; 2.70A {Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A*

Probab=90.57  E-value=0.14  Score=42.98  Aligned_cols=99  Identities=14%  Similarity=0.155  Sum_probs=60.9

Q ss_pred             ccCCC-eEEEEcC-c-chHHHHHHHH-hCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccc
Q 026513           68 IKGGE-LFLDYGT-G-SGILGIAAIK-FGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDG  143 (237)
Q Consensus        68 ~~~~~-~vLDlG~-G-~G~~~~~la~-~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~  143 (237)
                      +++|. +||-.|+ | .|..++.+++ .|. +|++++.+++.++.+++    .|...   -+.....+ .     +    
T Consensus       147 ~~~g~~~VlV~Ga~G~vG~~~~q~a~~~Ga-~vi~~~~~~~~~~~~~~----lGa~~---v~~~~~~~-~-----~----  208 (330)
T 1tt7_A          147 LSPEKGSVLVTGATGGVGGIAVSMLNKRGY-DVVASTGNREAADYLKQ----LGASE---VISREDVY-D-----G----  208 (330)
T ss_dssp             CCGGGCCEEEESTTSHHHHHHHHHHHHHTC-CEEEEESSSSTHHHHHH----HTCSE---EEEHHHHC-S-----S----
T ss_pred             cCCCCceEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHH----cCCcE---EEECCCch-H-----H----
Confidence            45665 8999997 3 4777777775 465 69999999887777764    24321   01110000 0     0    


Q ss_pred             cccccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEeccC
Q 026513          144 VVEDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGIL  197 (237)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~~~  197 (237)
                              ...... ...+|+|+......    .+....+.++++|++++.+..
T Consensus       209 --------~~~~~~-~~~~d~vid~~g~~----~~~~~~~~l~~~G~iv~~G~~  249 (330)
T 1tt7_A          209 --------TLKALS-KQQWQGAVDPVGGK----QLASLLSKIQYGGSVAVSGLT  249 (330)
T ss_dssp             --------CCCSSC-CCCEEEEEESCCTH----HHHHHHTTEEEEEEEEECCCS
T ss_pred             --------HHHHhh-cCCccEEEECCcHH----HHHHHHHhhcCCCEEEEEecC
Confidence                    001121 34799999766432    456778899999999886543

>3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str}

Probab=90.55  E-value=1.4  Score=35.47  Aligned_cols=85  Identities=15%  Similarity=0.174  Sum_probs=51.5

Q ss_pred             CCCeEEEEcCcchH---HHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccc
Q 026513           70 GGELFLDYGTGSGI---LGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVE  146 (237)
Q Consensus        70 ~~~~vLDlG~G~G~---~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  146 (237)
                      .++++|-.|++.|.   ++..+++.|. +|+.+|.++..++.+.+.+...+.     ++.++.+|+.+..   .+.++++
T Consensus         5 ~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~-----~~~~~~~Dv~~~~---~v~~~~~   75 (257)
T 3imf_A            5 KEKVVIITGGSSGMGKGMATRFAKEGA-RVVITGRTKEKLEEAKLEIEQFPG-----QILTVQMDVRNTD---DIQKMIE   75 (257)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCCSTT-----CEEEEECCTTCHH---HHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCC-----cEEEEEccCCCHH---HHHHHHH
Confidence            36788888876652   3344555654 599999999888877666544332     3778888887532   1222222


Q ss_pred             ccccccccCCCCCCceeEEEEeCC
Q 026513          147 DLSSHKIRGISQTEKYDVVIANIL  170 (237)
Q Consensus       147 ~~~~~~~~~~~~~~~fD~I~~n~~  170 (237)
                      ...+       .-++.|++|.|..
T Consensus        76 ~~~~-------~~g~id~lv~nAg   92 (257)
T 3imf_A           76 QIDE-------KFGRIDILINNAA   92 (257)
T ss_dssp             HHHH-------HHSCCCEEEECCC
T ss_pred             HHHH-------HcCCCCEEEECCC
Confidence            1100       0147899998764

>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*

Probab=90.54  E-value=1.4  Score=40.86  Aligned_cols=110  Identities=15%  Similarity=0.091  Sum_probs=64.0

Q ss_pred             CCeEEEEcCcchHHHHHHHHh--------C---C--CeEEEEeC---CHHHHHHHHH-----------HHHHcCC--C--
Q 026513           71 GELFLDYGTGSGILGIAAIKF--------G---A--AMSVGADI---DPQAIKSAHQ-----------NAALNNI--G--  119 (237)
Q Consensus        71 ~~~vLDlG~G~G~~~~~la~~--------~---~--~~v~~vD~---s~~~i~~a~~-----------~~~~~~~--~--  119 (237)
                      .-+|+|+|-|+|...+...+.        +   .  -+++++|.   +++.+..+-.           .+..-+.  .  
T Consensus        67 ~~~i~e~gfG~Gln~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~  146 (676)
T 3ps9_A           67 LFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPGC  146 (676)
T ss_dssp             EEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHHCCCCCSEE
T ss_pred             ceEEEEeCCchHHHHHHHHHHHHHhhhhCcCCCCceEEEEEEeCCCCCHHHHHHHHHhChhhHHHHHHHHHhCcccCCCc
Confidence            358999999999766544321        1   1  35889999   7766653322           1111111  0  


Q ss_pred             ------CCcceEEeccCccccccccccccccccccccccccCCCCCCceeEEEEeCChH------HHHHHHHHHhHhcCC
Q 026513          120 ------PKKMKLHLVPDRTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLN------PLLQLADHIVSYAKP  187 (237)
Q Consensus       120 ------~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~~------~~~~~l~~~~~~L~~  187 (237)
                            ...+.+.+..+|+.+         ++..+      .......||.|+.++...      +..+++..+.++++|
T Consensus       147 ~~~~~~~~~~~l~l~~gd~~~---------~l~~~------~~~~~~~~d~~~~D~f~p~~np~~w~~~~~~~l~~~~~~  211 (676)
T 3ps9_A          147 HRLLLDAGRVTLDLWFGDINE---------LTSQL------DDSLNQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLARP  211 (676)
T ss_dssp             EEEEEGGGTEEEEEEESCHHH---------HGGGB------CGGGTTCEEEEEECCSCGGGCGGGSCHHHHHHHHHHEEE
T ss_pred             eEEEecCCcEEEEEecCCHHH---------HHHhc------ccccCCcccEEEECCCCCcCChhhhhHHHHHHHHHHhCC
Confidence                  112344555566542         11111      001136799999977421      235788999999999


Q ss_pred             CeEEEEec
Q 026513          188 GAVVGISG  195 (237)
Q Consensus       188 gG~liis~  195 (237)
                      ||.+...+
T Consensus       212 g~~~~t~~  219 (676)
T 3ps9_A          212 GGTLATFT  219 (676)
T ss_dssp             EEEEEESC
T ss_pred             CCEEEecc
Confidence            99987643

>3tsc_A Putative oxidoreductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp} SCOP: c.2.1.0

Probab=90.47  E-value=1.5  Score=35.52  Aligned_cols=85  Identities=20%  Similarity=0.238  Sum_probs=50.5

Q ss_pred             CCCeEEEEcCcchH---HHHHHHHhCCCeEEEEeC-------------CHHHHHHHHHHHHHcCCCCCcceEEeccCccc
Q 026513           70 GGELFLDYGTGSGI---LGIAAIKFGAAMSVGADI-------------DPQAIKSAHQNAALNNIGPKKMKLHLVPDRTF  133 (237)
Q Consensus        70 ~~~~vLDlG~G~G~---~~~~la~~~~~~v~~vD~-------------s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~  133 (237)
                      .++++|-.|++.|.   ++..+++.|. +|+.+|.             ++..++...+.+...+.     ++.++..|+.
T Consensus        10 ~~k~~lVTGas~GIG~a~a~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~D~~   83 (277)
T 3tsc_A           10 EGRVAFITGAARGQGRAHAVRMAAEGA-DIIAVDIAGKLPSCVPYDPASPDDLSETVRLVEAANR-----RIVAAVVDTR   83 (277)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHHTTC-----CEEEEECCTT
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHcCC-EEEEEeccccccccccccccCHHHHHHHHHHHHhcCC-----eEEEEECCCC
Confidence            47789999987763   3444556654 5899988             66666666555554442     3777788876


Q ss_pred             cccccccccccccccccccccCCCCCCceeEEEEeCC
Q 026513          134 TASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANIL  170 (237)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~  170 (237)
                      +..   .+..+++...       ..-++.|++|.|..
T Consensus        84 ~~~---~v~~~~~~~~-------~~~g~id~lvnnAg  110 (277)
T 3tsc_A           84 DFD---RLRKVVDDGV-------AALGRLDIIVANAG  110 (277)
T ss_dssp             CHH---HHHHHHHHHH-------HHHSCCCEEEECCC
T ss_pred             CHH---HHHHHHHHHH-------HHcCCCCEEEECCC
Confidence            432   1222221110       00147899998764

>4dkj_A Cytosine-specific methyltransferase; CG-specificity, DNA intercalation, CPG sequence, cytosine C5 methylation; HET: DNA C37 5CM SAH; 2.15A {Mycoplasma penetrans}

Probab=90.23  E-value=0.29  Score=42.85  Aligned_cols=44  Identities=16%  Similarity=-0.130  Sum_probs=37.2

Q ss_pred             CeEEEEcCcchHHHHHHHHhC--CCe----EEEEeCCHHHHHHHHHHHHH
Q 026513           72 ELFLDYGTGSGILGIAAIKFG--AAM----SVGADIDPQAIKSAHQNAAL  115 (237)
Q Consensus        72 ~~vLDlG~G~G~~~~~la~~~--~~~----v~~vD~s~~~i~~a~~~~~~  115 (237)
                      .+|+|+.||.|++...+.+.|  ..-    |.++|+++.+++..+.|...
T Consensus        11 lrvldLFsGiGG~~~Gl~~aG~~~~~~~~~v~avEid~~A~~ty~~n~~~   60 (403)
T 4dkj_A           11 IKVFEAFAGIGSQFKALKNIARSKNWEIQHSGMVEWFVDAIVSYVAIHSK   60 (403)
T ss_dssp             EEEEEETCTTCHHHHHHHHHHHHHTEEEEEEEEECCBHHHHHHHHHHHCS
T ss_pred             ceEEEEecCcCHHHHHHHHhCCccccceeeEEEEecCHHHHHHHHHHcCC
Confidence            489999999999999888766  344    88999999999998888753

>4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold, peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA; 1.84A {Homo sapiens} PDB: 4fc6_A*

Probab=90.02  E-value=1.5  Score=35.71  Aligned_cols=85  Identities=16%  Similarity=0.150  Sum_probs=50.6

Q ss_pred             CCCeEEEEcCcchH---HHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHH-cCCCCCcceEEeccCccccccccccccccc
Q 026513           70 GGELFLDYGTGSGI---LGIAAIKFGAAMSVGADIDPQAIKSAHQNAAL-NNIGPKKMKLHLVPDRTFTASMNERVDGVV  145 (237)
Q Consensus        70 ~~~~vLDlG~G~G~---~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~-~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  145 (237)
                      .++++|-.|++.|.   ++..+++.|. +|+.++.+....+.+.+.+.. .+.     ++.++.+|+.+..   .+..++
T Consensus        26 ~~k~~lVTGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~-----~~~~~~~Dv~~~~---~v~~~~   96 (277)
T 4fc7_A           26 RDKVAFITGGGSGIGFRIAEIFMRHGC-HTVIASRSLPRVLTAARKLAGATGR-----RCLPLSMDVRAPP---AVMAAV   96 (277)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHTTTC-EEEEEESCHHHHHHHHHHHHHHHSS-----CEEEEECCTTCHH---HHHHHH
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhcCC-----cEEEEEcCCCCHH---HHHHHH
Confidence            47789999987662   3344455554 699999998877665555433 232     3778888887532   122222


Q ss_pred             cccccccccCCCCCCceeEEEEeCC
Q 026513          146 EDLSSHKIRGISQTEKYDVVIANIL  170 (237)
Q Consensus       146 ~~~~~~~~~~~~~~~~fD~I~~n~~  170 (237)
                      +...+       .-++.|++|.|..
T Consensus        97 ~~~~~-------~~g~id~lv~nAg  114 (277)
T 4fc7_A           97 DQALK-------EFGRIDILINCAA  114 (277)
T ss_dssp             HHHHH-------HHSCCCEEEECCC
T ss_pred             HHHHH-------HcCCCCEEEECCc
Confidence            21100       0147899998764

>4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold, oxoacyl-ACP reductase, NADP binding, fatty AC biosynthsis, oxidoreductase; HET: NAP; 2.38A {Synechococcus elongatus} PDB: 4dml_A*

Probab=89.73  E-value=2  Score=34.86  Aligned_cols=85  Identities=16%  Similarity=0.135  Sum_probs=49.9

Q ss_pred             CCCeEEEEcCcchH---HHHHHHHhCCCeEEEEeC-CHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccc
Q 026513           70 GGELFLDYGTGSGI---LGIAAIKFGAAMSVGADI-DPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVV  145 (237)
Q Consensus        70 ~~~~vLDlG~G~G~---~~~~la~~~~~~v~~vD~-s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  145 (237)
                      .++++|-.|+++|.   ++..+++.|. +|+.++. ++...+...+.+...+.     ++.++.+|+.+..   .+..++
T Consensus        27 ~~k~vlVTGas~gIG~aia~~la~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~D~~d~~---~v~~~~   97 (269)
T 4dmm_A           27 TDRIALVTGASRGIGRAIALELAAAGA-KVAVNYASSAGAADEVVAAIAAAGG-----EAFAVKADVSQES---EVEALF   97 (269)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTC-----CEEEEECCTTSHH---HHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCChHHHHHHHHHHHhcCC-----cEEEEECCCCCHH---HHHHHH
Confidence            47788888877662   3344555654 5777777 67776666666655442     3777888887532   122222


Q ss_pred             cccccccccCCCCCCceeEEEEeCC
Q 026513          146 EDLSSHKIRGISQTEKYDVVIANIL  170 (237)
Q Consensus       146 ~~~~~~~~~~~~~~~~fD~I~~n~~  170 (237)
                      +...+       .-++.|++|.|..
T Consensus        98 ~~~~~-------~~g~id~lv~nAg  115 (269)
T 4dmm_A           98 AAVIE-------RWGRLDVLVNNAG  115 (269)
T ss_dssp             HHHHH-------HHSCCCEEEECCC
T ss_pred             HHHHH-------HcCCCCEEEECCC
Confidence            21100       0147899998763

>3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate 5-dehydratase, NAD(P) dependent, enzyme initiative, EFI, oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae} SCOP: c.2.1.0

Probab=89.71  E-value=1.7  Score=35.40  Aligned_cols=83  Identities=22%  Similarity=0.193  Sum_probs=46.4

Q ss_pred             CCCeEEEEcCcchH---HHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccc
Q 026513           70 GGELFLDYGTGSGI---LGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVE  146 (237)
Q Consensus        70 ~~~~vLDlG~G~G~---~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  146 (237)
                      .|+++|-.|++.|.   ++..+++.|. +|+++|-++.. +...+.+...+.     ++.++.+|+.+..-.   ..+.+
T Consensus        30 ~gk~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~-~~~~~~~~~~~~-----~~~~~~~Dv~d~~~v---~~~~~   99 (273)
T 3uf0_A           30 AGRTAVVTGAGSGIGRAIAHGYARAGA-HVLAWGRTDGV-KEVADEIADGGG-----SAEAVVADLADLEGA---ANVAE   99 (273)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSTHH-HHHHHHHHTTTC-----EEEEEECCTTCHHHH---HHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEcCHHHH-HHHHHHHHhcCC-----cEEEEEecCCCHHHH---HHHHH
Confidence            47889999987762   4445556665 58888855443 333333333221     477888888753211   11111


Q ss_pred             ccccccccCCCCCCceeEEEEeCC
Q 026513          147 DLSSHKIRGISQTEKYDVVIANIL  170 (237)
Q Consensus       147 ~~~~~~~~~~~~~~~fD~I~~n~~  170 (237)
                      ..        ...++.|++|.|..
T Consensus       100 ~~--------~~~g~iD~lv~nAg  115 (273)
T 3uf0_A          100 EL--------AATRRVDVLVNNAG  115 (273)
T ss_dssp             HH--------HHHSCCCEEEECCC
T ss_pred             HH--------HhcCCCcEEEECCC
Confidence            10        00147899998763

>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6

Probab=89.60  E-value=7.1  Score=31.51  Aligned_cols=88  Identities=19%  Similarity=0.181  Sum_probs=56.7

Q ss_pred             eEEEEcCcc-h-HHHHHHHHhCC-CeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccccc
Q 026513           73 LFLDYGTGS-G-ILGIAAIKFGA-AMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDLS  149 (237)
Q Consensus        73 ~vLDlG~G~-G-~~~~~la~~~~-~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~  149 (237)
                      +|.-+|+|. | .++..++..|. .+|+++|.++..++.+++    .+...   ..   ..|..                
T Consensus         3 ~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~----~g~~~---~~---~~~~~----------------   56 (281)
T 2g5c_A            3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVD----LGIID---EG---TTSIA----------------   56 (281)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHH----TTSCS---EE---ESCGG----------------
T ss_pred             EEEEEecCHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHH----CCCcc---cc---cCCHH----------------
Confidence            577889886 3 34444555554 369999999988766542    24321   01   11111                


Q ss_pred             cccccCCCCCC-ceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEE
Q 026513          150 SHKIRGISQTE-KYDVVIANILLNPLLQLADHIVSYAKPGAVVGI  193 (237)
Q Consensus       150 ~~~~~~~~~~~-~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~lii  193 (237)
                           ..  -. ..|+|+...+.....+++..+...++++..++.
T Consensus        57 -----~~--~~~~aDvVilavp~~~~~~v~~~l~~~l~~~~iv~~   94 (281)
T 2g5c_A           57 -----KV--EDFSPDFVMLSSPVRTFREIAKKLSYILSEDATVTD   94 (281)
T ss_dssp             -----GG--GGTCCSEEEECSCHHHHHHHHHHHHHHSCTTCEEEE
T ss_pred             -----HH--hcCCCCEEEEcCCHHHHHHHHHHHHhhCCCCcEEEE
Confidence                 11  13 689999988887777888888888999886655

>3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis}

Probab=89.56  E-value=1.8  Score=35.30  Aligned_cols=82  Identities=20%  Similarity=0.200  Sum_probs=48.8

Q ss_pred             CCCeEEEEcCcchH---HHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccc
Q 026513           70 GGELFLDYGTGSGI---LGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVE  146 (237)
Q Consensus        70 ~~~~vLDlG~G~G~---~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  146 (237)
                      .|+++|-.|++.|.   ++..+++.|. +|+.+|.++..++.+.+.+   +.     ++.++.+|+.+..   .+..+++
T Consensus        28 ~gk~vlVTGas~gIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~---~~-----~~~~~~~Dv~d~~---~v~~~~~   95 (277)
T 3gvc_A           28 AGKVAIVTGAGAGIGLAVARRLADEGC-HVLCADIDGDAADAAATKI---GC-----GAAACRVDVSDEQ---QIIAMVD   95 (277)
T ss_dssp             TTCEEEETTTTSTHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHH---CS-----SCEEEECCTTCHH---HHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHc---CC-----cceEEEecCCCHH---HHHHHHH
Confidence            47789988877662   3445556654 6999999988776655443   21     2567778876432   1111211


Q ss_pred             ccccccccCCCCCCceeEEEEeCC
Q 026513          147 DLSSHKIRGISQTEKYDVVIANIL  170 (237)
Q Consensus       147 ~~~~~~~~~~~~~~~fD~I~~n~~  170 (237)
                      ...       ..-++.|++|.|..
T Consensus        96 ~~~-------~~~g~iD~lvnnAg  112 (277)
T 3gvc_A           96 ACV-------AAFGGVDKLVANAG  112 (277)
T ss_dssp             HHH-------HHHSSCCEEEECCC
T ss_pred             HHH-------HHcCCCCEEEECCC
Confidence            110       00147899998764

>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp}

Probab=89.52  E-value=0.73  Score=36.78  Aligned_cols=85  Identities=16%  Similarity=0.159  Sum_probs=53.0

Q ss_pred             CCCeEEEEcCcch---HHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccc
Q 026513           70 GGELFLDYGTGSG---ILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVE  146 (237)
Q Consensus        70 ~~~~vLDlG~G~G---~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  146 (237)
                      .++++|-.|++.|   .++..+++.|. +|+.+|.++..++...+.+...+.     ++.++.+|+.+..   .+..+++
T Consensus         8 ~~k~vlITGas~giG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~-----~~~~~~~D~~~~~---~~~~~~~   78 (253)
T 3qiv_A            8 ENKVGIVTGSGGGIGQAYAEALAREGA-AVVVADINAEAAEAVAKQIVADGG-----TAISVAVDVSDPE---SAKAMAD   78 (253)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTC-----EEEEEECCTTSHH---HHHHHHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHhcCC-----cEEEEEccCCCHH---HHHHHHH
Confidence            4678999997765   23444555654 599999999988877776665442     4778888887532   1122221


Q ss_pred             ccccccccCCCCCCceeEEEEeCC
Q 026513          147 DLSSHKIRGISQTEKYDVVIANIL  170 (237)
Q Consensus       147 ~~~~~~~~~~~~~~~fD~I~~n~~  170 (237)
                      ...       ..-++.|++|.|..
T Consensus        79 ~~~-------~~~g~id~li~~Ag   95 (253)
T 3qiv_A           79 RTL-------AEFGGIDYLVNNAA   95 (253)
T ss_dssp             HHH-------HHHSCCCEEEECCC
T ss_pred             HHH-------HHcCCCCEEEECCC
Confidence            110       00147899998763

>3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis}

Probab=89.47  E-value=0.77  Score=36.98  Aligned_cols=85  Identities=16%  Similarity=0.129  Sum_probs=53.1

Q ss_pred             CCCeEEEEcCcchH---HHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccc
Q 026513           70 GGELFLDYGTGSGI---LGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVE  146 (237)
Q Consensus        70 ~~~~vLDlG~G~G~---~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  146 (237)
                      .++++|-.|++.|.   ++..+++.|. +|+.+|.++..++...+.+...+.     ++.++.+|+.+..   .+..+++
T Consensus        11 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~-----~~~~~~~Dv~d~~---~v~~~~~   81 (256)
T 3gaf_A           11 NDAVAIVTGAAAGIGRAIAGTFAKAGA-SVVVTDLKSEGAEAVAAAIRQAGG-----KAIGLECNVTDEQ---HREAVIK   81 (256)
T ss_dssp             TTCEEEECSCSSHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHHHHHHHTTC-----CEEEEECCTTCHH---HHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCC-----cEEEEECCCCCHH---HHHHHHH
Confidence            47788988887763   3445556665 599999999888877776665542     3777888887532   1122221


Q ss_pred             ccccccccCCCCCCceeEEEEeCC
Q 026513          147 DLSSHKIRGISQTEKYDVVIANIL  170 (237)
Q Consensus       147 ~~~~~~~~~~~~~~~fD~I~~n~~  170 (237)
                      ...       ..-++.|+++.|..
T Consensus        82 ~~~-------~~~g~id~lv~nAg   98 (256)
T 3gaf_A           82 AAL-------DQFGKITVLVNNAG   98 (256)
T ss_dssp             HHH-------HHHSCCCEEEECCC
T ss_pred             HHH-------HHcCCCCEEEECCC
Confidence            110       00147899998763

>2bd0_A Sepiapterin reductase; oxidoreductase; HET: NAP BIO; 1.70A {Chlorobium tepidum} SCOP: c.2.1.2

Probab=89.47  E-value=2.7  Score=33.07  Aligned_cols=59  Identities=8%  Similarity=0.107  Sum_probs=37.9

Q ss_pred             CCeEEEEcCcch---HHHHHHHHhCCC------eEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccc
Q 026513           71 GELFLDYGTGSG---ILGIAAIKFGAA------MSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFT  134 (237)
Q Consensus        71 ~~~vLDlG~G~G---~~~~~la~~~~~------~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~  134 (237)
                      ++++|-.|++.|   .++..+++.|..      +|++++.++..++...+.+...+.     ++.++.+|+.+
T Consensus         2 ~k~vlITGasggiG~~la~~l~~~G~~~~~~~~~V~~~~r~~~~~~~~~~~~~~~~~-----~~~~~~~D~~~   69 (244)
T 2bd0_A            2 KHILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECRAEGA-----LTDTITADISD   69 (244)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHHHHHHHHHTTTC-----EEEEEECCTTS
T ss_pred             CCEEEEECCCChHHHHHHHHHHHhcCcccccceEEEEEeCCHHHHHHHHHHHHccCC-----eeeEEEecCCC
Confidence            456787776554   233344456653      799999998877766555543321     47788888864

>1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2

Probab=89.41  E-value=3.7  Score=33.11  Aligned_cols=61  Identities=18%  Similarity=0.104  Sum_probs=40.1

Q ss_pred             CCCeEEEEcCcchH---HHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccc
Q 026513           70 GGELFLDYGTGSGI---LGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFT  134 (237)
Q Consensus        70 ~~~~vLDlG~G~G~---~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~  134 (237)
                      .++++|-.|++.|.   ++..+++.| .+|++++.++..++...+.+...+...   ++.++.+|+.+
T Consensus        31 ~~k~vlVTGasggIG~~la~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~---~~~~~~~Dl~~   94 (279)
T 1xg5_A           31 RDRLALVTGASGGIGAAVARALVQQG-LKVVGCARTVGNIEELAAECKSAGYPG---TLIPYRCDLSN   94 (279)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHTTCSS---EEEEEECCTTC
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCC-CEEEEEECChHHHHHHHHHHHhcCCCc---eEEEEEecCCC
Confidence            46788888866542   233344555 469999999888776666665544322   46777888864

>3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1}

Probab=89.40  E-value=0.83  Score=36.97  Aligned_cols=108  Identities=8%  Similarity=-0.002  Sum_probs=58.5

Q ss_pred             CCCeEEEEcCcchH---HHHHHHHhCCCeEEEEeCCH---HHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccc
Q 026513           70 GGELFLDYGTGSGI---LGIAAIKFGAAMSVGADIDP---QAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDG  143 (237)
Q Consensus        70 ~~~~vLDlG~G~G~---~~~~la~~~~~~v~~vD~s~---~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~  143 (237)
                      .++++|-.|++.|.   ++..+++.| .+|+.++.+.   ..++...+.+...+.     ++.++..|+.+..   .+..
T Consensus        10 ~~k~vlVTGas~GIG~aia~~la~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~-----~~~~~~~Dv~d~~---~v~~   80 (262)
T 3ksu_A           10 KNKVIVIAGGIKNLGALTAKTFALES-VNLVLHYHQAKDSDTANKLKDELEDQGA-----KVALYQSDLSNEE---EVAK   80 (262)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHTTSS-CEEEEEESCGGGHHHHHHHHHHHHTTTC-----EEEEEECCCCSHH---HHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCC-CEEEEEecCccCHHHHHHHHHHHHhcCC-----cEEEEECCCCCHH---HHHH
Confidence            46789988877662   223333444 4588876543   344444444443332     4778888887532   1222


Q ss_pred             cccccccccccCCCCCCceeEEEEeCCh-----------HHH-----------HHHHHHHhHhcCCCeEEEE
Q 026513          144 VVEDLSSHKIRGISQTEKYDVVIANILL-----------NPL-----------LQLADHIVSYAKPGAVVGI  193 (237)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~fD~I~~n~~~-----------~~~-----------~~~l~~~~~~L~~gG~lii  193 (237)
                      +++...+       .-++.|++|.|...           ..+           -.+.+.+...++++|.+++
T Consensus        81 ~~~~~~~-------~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~iv~  145 (262)
T 3ksu_A           81 LFDFAEK-------EFGKVDIAINTVGKVLKKPIVETSEAEFDAMDTINNKVAYFFIKQAAKHMNPNGHIIT  145 (262)
T ss_dssp             HHHHHHH-------HHCSEEEEEECCCCCCSSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEE
T ss_pred             HHHHHHH-------HcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHhhcCCCEEEE
Confidence            2221100       01479999987641           111           1235556666677787776

>3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A*

Probab=89.36  E-value=2.8  Score=32.81  Aligned_cols=58  Identities=9%  Similarity=0.013  Sum_probs=38.5

Q ss_pred             CCeEEEEcCcchH---HHHHHHHhCCCeEEEEeCCHHHHHHHHHHHH-HcCCCCCcceEEeccCcccc
Q 026513           71 GELFLDYGTGSGI---LGIAAIKFGAAMSVGADIDPQAIKSAHQNAA-LNNIGPKKMKLHLVPDRTFT  134 (237)
Q Consensus        71 ~~~vLDlG~G~G~---~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~-~~~~~~~~~~v~~~~~d~~~  134 (237)
                      ++++|-.|++.|.   ++..+++.|. +|+.++.++..++.+.+.+. ..+.     ++.++.+|+.+
T Consensus         2 ~k~vlITGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~-----~~~~~~~D~~~   63 (235)
T 3l77_A            2 MKVAVITGASRGIGEAIARALARDGY-ALALGARSVDRLEKIAHELMQEQGV-----EVFYHHLDVSK   63 (235)
T ss_dssp             CCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHHCC-----CEEEEECCTTC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhhcCC-----eEEEEEeccCC
Confidence            5678888876552   3334445554 59999999988777666554 3332     37788888865

>3s55_A Putative short-chain dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 2.10A {Mycobacterium abscessus} SCOP: c.2.1.0

Probab=89.34  E-value=2.8  Score=33.96  Aligned_cols=85  Identities=14%  Similarity=0.081  Sum_probs=49.6

Q ss_pred             CCCeEEEEcCcchH---HHHHHHHhCCCeEEEEeCC------------HHHHHHHHHHHHHcCCCCCcceEEeccCcccc
Q 026513           70 GGELFLDYGTGSGI---LGIAAIKFGAAMSVGADID------------PQAIKSAHQNAALNNIGPKKMKLHLVPDRTFT  134 (237)
Q Consensus        70 ~~~~vLDlG~G~G~---~~~~la~~~~~~v~~vD~s------------~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~  134 (237)
                      .++++|-.|++.|.   ++..+++.|. +|+.+|.+            ...++...+.+...+.     ++.++..|+.+
T Consensus         9 ~~k~~lVTGas~gIG~a~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~Dv~~   82 (281)
T 3s55_A            9 EGKTALITGGARGMGRSHAVALAEAGA-DIAICDRCENSDVVGYPLATADDLAETVALVEKTGR-----RCISAKVDVKD   82 (281)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHTTC-----CEEEEECCTTC
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-eEEEEeCCccccccccccccHHHHHHHHHHHHhcCC-----eEEEEeCCCCC
Confidence            47789999987762   3444555654 58999986            5555555555554442     37788888865


Q ss_pred             ccccccccccccccccccccCCCCCCceeEEEEeCC
Q 026513          135 ASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANIL  170 (237)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~  170 (237)
                      ..   .+..+++...       ..-++.|++|.|..
T Consensus        83 ~~---~v~~~~~~~~-------~~~g~id~lv~nAg  108 (281)
T 3s55_A           83 RA---ALESFVAEAE-------DTLGGIDIAITNAG  108 (281)
T ss_dssp             HH---HHHHHHHHHH-------HHHTCCCEEEECCC
T ss_pred             HH---HHHHHHHHHH-------HhcCCCCEEEECCC
Confidence            32   1222222110       00147899998764

>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber}

Probab=89.29  E-value=0.78  Score=37.48  Aligned_cols=85  Identities=12%  Similarity=0.093  Sum_probs=51.8

Q ss_pred             CCCeEEEEcCcchH---HHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccc
Q 026513           70 GGELFLDYGTGSGI---LGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVE  146 (237)
Q Consensus        70 ~~~~vLDlG~G~G~---~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  146 (237)
                      .++++|-.|++.|.   ++..+++.| .+|++++.++..++.+.+.+...+.     ++.++.+|+.+..   .+..+++
T Consensus        23 ~~k~~lVTGas~GIG~aia~~la~~G-~~V~~~~r~~~~~~~~~~~l~~~~~-----~~~~~~~Dv~d~~---~v~~~~~   93 (279)
T 3sju_A           23 RPQTAFVTGVSSGIGLAVARTLAARG-IAVYGCARDAKNVSAAVDGLRAAGH-----DVDGSSCDVTSTD---EVHAAVA   93 (279)
T ss_dssp             --CEEEEESTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHTTTC-----CEEEEECCTTCHH---HHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhcCC-----cEEEEECCCCCHH---HHHHHHH
Confidence            46789999977662   344455565 4599999999888877776665442     3778888886432   1122221


Q ss_pred             ccccccccCCCCCCceeEEEEeCC
Q 026513          147 DLSSHKIRGISQTEKYDVVIANIL  170 (237)
Q Consensus       147 ~~~~~~~~~~~~~~~fD~I~~n~~  170 (237)
                      ...       ..-++.|++|.|..
T Consensus        94 ~~~-------~~~g~id~lv~nAg  110 (279)
T 3sju_A           94 AAV-------ERFGPIGILVNSAG  110 (279)
T ss_dssp             HHH-------HHHCSCCEEEECCC
T ss_pred             HHH-------HHcCCCcEEEECCC
Confidence            110       00147899998764

>1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2

Probab=89.15  E-value=3  Score=33.26  Aligned_cols=83  Identities=19%  Similarity=0.192  Sum_probs=48.2

Q ss_pred             CCeEEEEcCcch---HHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccc
Q 026513           71 GELFLDYGTGSG---ILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVED  147 (237)
Q Consensus        71 ~~~vLDlG~G~G---~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  147 (237)
                      ++++|-.|++.|   .++..+++.| .+|++++.++..++...+.+...+.     ++.++.+|+.+..   .+.++++.
T Consensus         2 ~k~vlVTGas~gIG~~ia~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~-----~~~~~~~D~~~~~---~v~~~~~~   72 (256)
T 1geg_A            2 KKVALVTGAGQGIGKAIALRLVKDG-FAVAIADYNDATAKAVASEINQAGG-----HAVAVKVDVSDRD---QVFAAVEQ   72 (256)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHTTC-----CEEEEECCTTSHH---HHHHHHHH
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhcCC-----cEEEEEecCCCHH---HHHHHHHH
Confidence            457888887655   2333444555 4699999998877766555554332     2667788876421   12222211


Q ss_pred             cccccccCCCCCCceeEEEEeC
Q 026513          148 LSSHKIRGISQTEKYDVVIANI  169 (237)
Q Consensus       148 ~~~~~~~~~~~~~~fD~I~~n~  169 (237)
                      ..       ..-+++|++|.|.
T Consensus        73 ~~-------~~~g~id~lv~nA   87 (256)
T 1geg_A           73 AR-------KTLGGFDVIVNNA   87 (256)
T ss_dssp             HH-------HHTTCCCEEEECC
T ss_pred             HH-------HHhCCCCEEEECC
Confidence            10       0024789999876

>3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 3.00A {Sinorhizobium meliloti}

Probab=89.12  E-value=2.1  Score=34.87  Aligned_cols=86  Identities=19%  Similarity=0.191  Sum_probs=50.6

Q ss_pred             CCCeEEEEcCcchH---HHHHHHHhCCCeEEEEeC-CHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccc
Q 026513           70 GGELFLDYGTGSGI---LGIAAIKFGAAMSVGADI-DPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVV  145 (237)
Q Consensus        70 ~~~~vLDlG~G~G~---~~~~la~~~~~~v~~vD~-s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  145 (237)
                      .++++|-.|++.|.   ++..+++.|. +|+.++. ++..++...+.+......    ++.++.+|+.+..   .+.+++
T Consensus        24 ~~k~~lVTGas~GIG~~ia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~----~~~~~~~Dv~d~~---~v~~~~   95 (281)
T 3v2h_A           24 MTKTAVITGSTSGIGLAIARTLAKAGA-NIVLNGFGAPDEIRTVTDEVAGLSSG----TVLHHPADMTKPS---EIADMM   95 (281)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEECCCCHHHHHHHHHHHHTTCSS----CEEEECCCTTCHH---HHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCChHHHHHHHHHHhhccCC----cEEEEeCCCCCHH---HHHHHH
Confidence            36789999987662   3444556665 6899998 666666655555433222    3778888887532   122222


Q ss_pred             cccccccccCCCCCCceeEEEEeCC
Q 026513          146 EDLSSHKIRGISQTEKYDVVIANIL  170 (237)
Q Consensus       146 ~~~~~~~~~~~~~~~~fD~I~~n~~  170 (237)
                      +...       ..-++.|++|.|..
T Consensus        96 ~~~~-------~~~g~iD~lv~nAg  113 (281)
T 3v2h_A           96 AMVA-------DRFGGADILVNNAG  113 (281)
T ss_dssp             HHHH-------HHTSSCSEEEECCC
T ss_pred             HHHH-------HHCCCCCEEEECCC
Confidence            2110       00247899998764

>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6

Probab=89.10  E-value=5.1  Score=32.31  Aligned_cols=85  Identities=13%  Similarity=0.141  Sum_probs=55.0

Q ss_pred             eEEEEcCcc-h-HHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccccccc
Q 026513           73 LFLDYGTGS-G-ILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDLSS  150 (237)
Q Consensus        73 ~vLDlG~G~-G-~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~  150 (237)
                      +|.-+|+|. | .++..+++.|. +|+++|.++..++.+++    .++..     .. ..+..                 
T Consensus         2 ~i~iiG~G~~G~~~a~~l~~~g~-~V~~~~~~~~~~~~~~~----~g~~~-----~~-~~~~~-----------------   53 (279)
T 2f1k_A            2 KIGVVGLGLIGASLAGDLRRRGH-YLIGVSRQQSTCEKAVE----RQLVD-----EA-GQDLS-----------------   53 (279)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHH----TTSCS-----EE-ESCGG-----------------
T ss_pred             EEEEEcCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHh----CCCCc-----cc-cCCHH-----------------
Confidence            577789886 3 33444555554 69999999987765532    23321     11 11211                 


Q ss_pred             ccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEE
Q 026513          151 HKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVG  192 (237)
Q Consensus       151 ~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~li  192 (237)
                          ..   ...|+|+...+......++..+...++++..++
T Consensus        54 ----~~---~~~D~vi~av~~~~~~~~~~~l~~~~~~~~~vv   88 (279)
T 2f1k_A           54 ----LL---QTAKIIFLCTPIQLILPTLEKLIPHLSPTAIVT   88 (279)
T ss_dssp             ----GG---TTCSEEEECSCHHHHHHHHHHHGGGSCTTCEEE
T ss_pred             ----Hh---CCCCEEEEECCHHHHHHHHHHHHhhCCCCCEEE
Confidence                11   468999998887777888888888888877554

>1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A {Magnaporthe grisea} SCOP: c.2.1.2

Probab=89.04  E-value=1.7  Score=34.77  Aligned_cols=58  Identities=16%  Similarity=0.056  Sum_probs=36.6

Q ss_pred             CCCeEEEEcCcchHHHHH----HHHhCCCeEEEEeC-CHHHHHHHHHHHHHcCCCCCcceEEeccCcccc
Q 026513           70 GGELFLDYGTGSGILGIA----AIKFGAAMSVGADI-DPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFT  134 (237)
Q Consensus        70 ~~~~vLDlG~G~G~~~~~----la~~~~~~v~~vD~-s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~  134 (237)
                      .++++|-.|++. .++..    +++.| .+|++++- ++..++...+.+...+.     ++.++.+|+.+
T Consensus        20 ~~k~vlItGasg-giG~~la~~l~~~G-~~v~~~~r~~~~~~~~~~~~l~~~~~-----~~~~~~~D~~~   82 (274)
T 1ja9_A           20 AGKVALTTGAGR-GIGRGIAIELGRRG-ASVVVNYGSSSKAAEEVVAELKKLGA-----QGVAIQADISK   82 (274)
T ss_dssp             TTCEEEETTTTS-HHHHHHHHHHHHTT-CEEEEEESSCHHHHHHHHHHHHHTTC-----CEEEEECCTTS
T ss_pred             CCCEEEEeCCCc-hHHHHHHHHHHHCC-CEEEEEcCCchHHHHHHHHHHHhcCC-----cEEEEEecCCC
Confidence            367888888654 44443    44455 46888888 77766665555554332     36777888764

>3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} SCOP: c.2.1.0

Probab=89.02  E-value=3  Score=32.97  Aligned_cols=81  Identities=14%  Similarity=0.013  Sum_probs=48.4

Q ss_pred             CCeEEEEcCcchH---HHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccc
Q 026513           71 GELFLDYGTGSGI---LGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVED  147 (237)
Q Consensus        71 ~~~vLDlG~G~G~---~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  147 (237)
                      ++++|-.|++.|.   ++..+++.|. +|+.++.++..++...+.+..        ++.++..|+.+..   .+..+++.
T Consensus         3 ~k~vlVTGas~GIG~a~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~--------~~~~~~~D~~~~~---~v~~~~~~   70 (235)
T 3l6e_A            3 LGHIIVTGAGSGLGRALTIGLVERGH-QVSMMGRRYQRLQQQELLLGN--------AVIGIVADLAHHE---DVDVAFAA   70 (235)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHGG--------GEEEEECCTTSHH---HHHHHHHH
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhcC--------CceEEECCCCCHH---HHHHHHHH
Confidence            4678888877662   3444555654 599999999887766555421        2677788876432   12222221


Q ss_pred             cccccccCCCCCCceeEEEEeCC
Q 026513          148 LSSHKIRGISQTEKYDVVIANIL  170 (237)
Q Consensus       148 ~~~~~~~~~~~~~~fD~I~~n~~  170 (237)
                      ..       ..-++.|+++.|..
T Consensus        71 ~~-------~~~g~id~lvnnAg   86 (235)
T 3l6e_A           71 AV-------EWGGLPELVLHCAG   86 (235)
T ss_dssp             HH-------HHHCSCSEEEEECC
T ss_pred             HH-------HhcCCCcEEEECCC
Confidence            10       00247899998764

>1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, dinucleotide binding fold, oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea} SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A*

Probab=88.94  E-value=2.4  Score=34.41  Aligned_cols=59  Identities=15%  Similarity=0.141  Sum_probs=34.7

Q ss_pred             CCCeEEEEcCcchH---HHHHHHHhCCCeEEEEeCCHHH-HHHHHHHHHHcCCCCCcceEEeccCcccc
Q 026513           70 GGELFLDYGTGSGI---LGIAAIKFGAAMSVGADIDPQA-IKSAHQNAALNNIGPKKMKLHLVPDRTFT  134 (237)
Q Consensus        70 ~~~~vLDlG~G~G~---~~~~la~~~~~~v~~vD~s~~~-i~~a~~~~~~~~~~~~~~~v~~~~~d~~~  134 (237)
                      .++++|-.|++.|.   ++..+++.| .+|++++.++.. .+.+.+.+...+.     ++.++.+|+.+
T Consensus        28 ~~k~vlVTGas~gIG~~ia~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~-----~~~~~~~D~~~   90 (283)
T 1g0o_A           28 EGKVALVTGAGRGIGREMAMELGRRG-CKVIVNYANSTESAEEVVAAIKKNGS-----DAACVKANVGV   90 (283)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTT-CEEEEEESSCHHHHHHHHHHHHHTTC-----CEEEEECCTTC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEeCCchHHHHHHHHHHHHhCC-----CeEEEEcCCCC
Confidence            46788888876652   333444555 458888887543 4444444444332     26677888764

>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0

Probab=88.92  E-value=2.8  Score=33.06  Aligned_cols=47  Identities=19%  Similarity=0.181  Sum_probs=33.7

Q ss_pred             CCCeEEEEcCcchH---HHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcC
Q 026513           70 GGELFLDYGTGSGI---LGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNN  117 (237)
Q Consensus        70 ~~~~vLDlG~G~G~---~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~  117 (237)
                      .++++|-.|++.|.   ++..+++.|. +|+.++.++..++...+.+...+
T Consensus        13 ~~k~vlITGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~   62 (247)
T 3i1j_A           13 KGRVILVTGAARGIGAAAARAYAAHGA-SVVLLGRTEASLAEVSDQIKSAG   62 (247)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTT
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEecCHHHHHHHHHHHHhcC
Confidence            46788888877652   3344555654 69999999998888777776654

>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}

Probab=88.76  E-value=2.3  Score=35.44  Aligned_cols=100  Identities=16%  Similarity=0.089  Sum_probs=58.7

Q ss_pred             CCCeEEEEcCcc-h-HHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccc
Q 026513           70 GGELFLDYGTGS-G-ILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVED  147 (237)
Q Consensus        70 ~~~~vLDlG~G~-G-~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  147 (237)
                      ...+|.-+|+|. | .++..+++.|. .|+.+ .+++.++..++.    ++.     +.....+..     ..+.     
T Consensus        18 ~~~kI~IiGaGa~G~~~a~~L~~~G~-~V~l~-~~~~~~~~i~~~----g~~-----~~~~~~~~~-----~~~~-----   76 (318)
T 3hwr_A           18 QGMKVAIMGAGAVGCYYGGMLARAGH-EVILI-ARPQHVQAIEAT----GLR-----LETQSFDEQ-----VKVS-----   76 (318)
T ss_dssp             --CEEEEESCSHHHHHHHHHHHHTTC-EEEEE-CCHHHHHHHHHH----CEE-----EECSSCEEE-----ECCE-----
T ss_pred             cCCcEEEECcCHHHHHHHHHHHHCCC-eEEEE-EcHhHHHHHHhC----CeE-----EEcCCCcEE-----Eeee-----
Confidence            346899999996 3 45555666654 68888 888777666543    221     110000000     0000     


Q ss_pred             cccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEe
Q 026513          148 LSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGIS  194 (237)
Q Consensus       148 ~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis  194 (237)
                          ..........+|+|+...+.....++++.+...++++..++..
T Consensus        77 ----~~~~~~~~~~~D~vilavk~~~~~~~l~~l~~~l~~~~~iv~~  119 (318)
T 3hwr_A           77 ----ASSDPSAVQGADLVLFCVKSTDTQSAALAMKPALAKSALVLSL  119 (318)
T ss_dssp             ----EESCGGGGTTCSEEEECCCGGGHHHHHHHHTTTSCTTCEEEEE
T ss_pred             ----eeCCHHHcCCCCEEEEEcccccHHHHHHHHHHhcCCCCEEEEe
Confidence                0000011247899999888778888999999999998766553

>1sby_A Alcohol dehydrogenase; ternary complex, NAD, trifluoroethanol, oxidoreductase; HET: NAD; 1.10A {Scaptodrosophila lebanonensis} SCOP: c.2.1.2 PDB: 1b14_A* 1b15_A* 1a4u_A* 1b2l_A* 1b16_A* 3rj5_A* 3rj9_A* 1mg5_A*

Probab=88.69  E-value=3.3  Score=32.90  Aligned_cols=59  Identities=12%  Similarity=0.019  Sum_probs=32.8

Q ss_pred             CCCeEEEEcCcchHHHHH----HHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccc
Q 026513           70 GGELFLDYGTGSGILGIA----AIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFT  134 (237)
Q Consensus        70 ~~~~vLDlG~G~G~~~~~----la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~  134 (237)
                      .++++|-.|++ |.++..    +++.|...|+.++.++.. +..++.....+ .   .++.++.+|+.+
T Consensus         4 ~~k~vlVtGas-~gIG~~~a~~l~~~G~~~v~~~~r~~~~-~~~~~l~~~~~-~---~~~~~~~~D~~~   66 (254)
T 1sby_A            4 TNKNVIFVAAL-GGIGLDTSRELVKRNLKNFVILDRVENP-TALAELKAINP-K---VNITFHTYDVTV   66 (254)
T ss_dssp             TTCEEEEETTT-SHHHHHHHHHHHHTCCSEEEEEESSCCH-HHHHHHHHHCT-T---SEEEEEECCTTS
T ss_pred             CCcEEEEECCC-ChHHHHHHHHHHHCCCcEEEEEecCchH-HHHHHHHHhCC-C---ceEEEEEEecCC
Confidence            36788888875 444444    445566558888887532 11121112211 1   147778888874

>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP}

Probab=88.65  E-value=3.7  Score=33.48  Aligned_cols=84  Identities=21%  Similarity=0.263  Sum_probs=55.9

Q ss_pred             CeEEEEcC-cc-h-HHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccccc
Q 026513           72 ELFLDYGT-GS-G-ILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDL  148 (237)
Q Consensus        72 ~~vLDlG~-G~-G-~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~  148 (237)
                      .+|.=+|+ |. | .++..++..| .+|+++|.++..++.+++    .++.     +    .+..               
T Consensus        12 m~I~iIG~tG~mG~~la~~l~~~g-~~V~~~~r~~~~~~~~~~----~g~~-----~----~~~~---------------   62 (286)
T 3c24_A           12 KTVAILGAGGKMGARITRKIHDSA-HHLAAIEIAPEGRDRLQG----MGIP-----L----TDGD---------------   62 (286)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHSS-SEEEEECCSHHHHHHHHH----TTCC-----C----CCSS---------------
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCC-CEEEEEECCHHHHHHHHh----cCCC-----c----CCHH---------------
Confidence            37999999 86 3 3444555555 469999999987766543    2321     1    1111               


Q ss_pred             ccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEE
Q 026513          149 SSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVG  192 (237)
Q Consensus       149 ~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~li  192 (237)
                            ..  -...|+|+...+-....+++..+...++++..++
T Consensus        63 ------~~--~~~aDvVi~av~~~~~~~v~~~l~~~l~~~~ivv   98 (286)
T 3c24_A           63 ------GW--IDEADVVVLALPDNIIEKVAEDIVPRVRPGTIVL   98 (286)
T ss_dssp             ------GG--GGTCSEEEECSCHHHHHHHHHHHGGGSCTTCEEE
T ss_pred             ------HH--hcCCCEEEEcCCchHHHHHHHHHHHhCCCCCEEE
Confidence                  01  2368999998887778888888888888876554

>4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A

Probab=88.57  E-value=2.1  Score=34.34  Aligned_cols=82  Identities=21%  Similarity=0.231  Sum_probs=48.2

Q ss_pred             CCCeEEEEcCcchH---HHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccc
Q 026513           70 GGELFLDYGTGSGI---LGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVE  146 (237)
Q Consensus        70 ~~~~vLDlG~G~G~---~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  146 (237)
                      .++++|-.|++.|.   ++..+++.|. +|+.+|.++..++...+.+   +.     ++.++.+|+.+..   .+..+++
T Consensus         7 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~---~~-----~~~~~~~D~~~~~---~v~~~~~   74 (259)
T 4e6p_A            7 EGKSALITGSARGIGRAFAEAYVREGA-TVAIADIDIERARQAAAEI---GP-----AAYAVQMDVTRQD---SIDAAIA   74 (259)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHH---CT-----TEEEEECCTTCHH---HHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHh---CC-----CceEEEeeCCCHH---HHHHHHH
Confidence            46789988876652   3344555654 5999999988766554443   21     2667788886432   1111221


Q ss_pred             ccccccccCCCCCCceeEEEEeCC
Q 026513          147 DLSSHKIRGISQTEKYDVVIANIL  170 (237)
Q Consensus       147 ~~~~~~~~~~~~~~~fD~I~~n~~  170 (237)
                      ...       ..-++.|++|.|..
T Consensus        75 ~~~-------~~~g~id~lv~~Ag   91 (259)
T 4e6p_A           75 ATV-------EHAGGLDILVNNAA   91 (259)
T ss_dssp             HHH-------HHSSSCCEEEECCC
T ss_pred             HHH-------HHcCCCCEEEECCC
Confidence            110       01247899998764

>3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A

Probab=88.45  E-value=6.2  Score=32.06  Aligned_cols=88  Identities=14%  Similarity=0.120  Sum_probs=56.8

Q ss_pred             CeEEEEcCcc-h-HHHHHHHHhC-CCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccccc
Q 026513           72 ELFLDYGTGS-G-ILGIAAIKFG-AAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDL  148 (237)
Q Consensus        72 ~~vLDlG~G~-G-~~~~~la~~~-~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~  148 (237)
                      .+|.=||+|. | .++..++..+ ..+|++.|.++..++.+++    .+...     .. ..|..               
T Consensus         7 ~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~----~g~~~-----~~-~~~~~---------------   61 (290)
T 3b1f_A            7 KTIYIAGLGLIGASLALGIKRDHPHYKIVGYNRSDRSRDIALE----RGIVD-----EA-TADFK---------------   61 (290)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSHHHHHHHHH----TTSCS-----EE-ESCTT---------------
T ss_pred             ceEEEEeeCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHH----cCCcc-----cc-cCCHH---------------
Confidence            4788899886 3 3444555554 4579999999987765543    23211     00 11111               


Q ss_pred             ccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHh-cCCCeEEE
Q 026513          149 SSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSY-AKPGAVVG  192 (237)
Q Consensus       149 ~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~-L~~gG~li  192 (237)
                            ..  -...|+|+...+......++..+... ++++..++
T Consensus        62 ------~~--~~~aDvVilavp~~~~~~v~~~l~~~~l~~~~ivi   98 (290)
T 3b1f_A           62 ------VF--AALADVIILAVPIKKTIDFIKILADLDLKEDVIIT   98 (290)
T ss_dssp             ------TT--GGGCSEEEECSCHHHHHHHHHHHHTSCCCTTCEEE
T ss_pred             ------Hh--hcCCCEEEEcCCHHHHHHHHHHHHhcCCCCCCEEE
Confidence                  11  13689999988887778888888887 88876555

>4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics, protein structure initiati nysgrc,oxidoreductase; 2.00A {Rhizobium etli}

Probab=88.42  E-value=2.4  Score=34.15  Aligned_cols=59  Identities=14%  Similarity=0.034  Sum_probs=38.0

Q ss_pred             CCCeEEEEcCcchH---HHHHHHHhCCCeEEE-EeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccc
Q 026513           70 GGELFLDYGTGSGI---LGIAAIKFGAAMSVG-ADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFT  134 (237)
Q Consensus        70 ~~~~vLDlG~G~G~---~~~~la~~~~~~v~~-vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~  134 (237)
                      .++++|-.|++.|.   ++..+++.|.. |+. .+.++...+...+.+...+.     ++.++.+|+.+
T Consensus        25 ~~k~vlITGas~gIG~a~a~~l~~~G~~-V~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~Dl~~   87 (272)
T 4e3z_A           25 DTPVVLVTGGSRGIGAAVCRLAARQGWR-VGVNYAANREAADAVVAAITESGG-----EAVAIPGDVGN   87 (272)
T ss_dssp             CSCEEEETTTTSHHHHHHHHHHHHTTCE-EEEEESSCHHHHHHHHHHHHHTTC-----EEEEEECCTTC
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCE-EEEEcCCChhHHHHHHHHHHhcCC-----cEEEEEcCCCC
Confidence            46788888876652   33445556655 554 47788777776666655432     47788888875

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=88.38  E-value=2.1  Score=34.49  Aligned_cols=33  Identities=21%  Similarity=0.142  Sum_probs=26.0

Q ss_pred             CCeEEEEcCcc-hH-HHHHHHHhCCCeEEEEeCCH
Q 026513           71 GELFLDYGTGS-GI-LGIAAIKFGAAMSVGADIDP  103 (237)
Q Consensus        71 ~~~vLDlG~G~-G~-~~~~la~~~~~~v~~vD~s~  103 (237)
                      +.+|+-+|||. |. .+..|+..|..+++.+|.+.
T Consensus        31 ~~~VlVvG~Gg~G~~va~~La~~Gv~~i~lvD~d~   65 (249)
T 1jw9_B           31 DSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDT   65 (249)
T ss_dssp             HCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred             CCeEEEEeeCHHHHHHHHHHHHcCCCeEEEEcCCC
Confidence            56899999984 43 34456778989999999986

>4gua_A Non-structural polyprotein; viral precursor polyprotein, protease, zinc-binding, hydrola; HET: MES; 2.85A {Sindbis virus}

Probab=88.37  E-value=0.82  Score=41.49  Aligned_cols=61  Identities=13%  Similarity=0.267  Sum_probs=41.7

Q ss_pred             CCCCceeEEEEeCC----hHHHH----------HHHHHHhHhcCCCeEEEEecc-CC-CCHHHHHHHHhhcccccee
Q 026513          157 SQTEKYDVVIANIL----LNPLL----------QLADHIVSYAKPGAVVGISGI-LS-EQLPHIINRYSEFLEDILV  217 (237)
Q Consensus       157 ~~~~~fD~I~~n~~----~~~~~----------~~l~~~~~~L~~gG~liis~~-~~-~~~~~~~~~~~~~~~~~~~  217 (237)
                      ...++||+||+|..    .||+.          -+-.....+|+|||.+++.++ +. ..++.+...+...|...++
T Consensus       217 p~~~ryDlvfvn~~t~yr~HHyqQCeDHa~~l~ml~~~al~~l~pGGt~v~~~YGyADr~sE~vv~alaRkF~~~rv  293 (670)
T 4gua_A          217 PPQARYDLVFINIGTKYRNHHFQQCEDHAATLKTLSRSALNCLNPGGTLVVKSYGYADRNSEDVVTALARKFVRVSA  293 (670)
T ss_dssp             CCCCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHTEEEEEEEEEEESCCCSHHHHHHHHHHHHTEEEEEE
T ss_pred             CCCCcccEEEEecCCCcccchHHHHHHHHHHHHHHhHHHHhhcCCCceEEEEEeeccccchHHHHHHHHhheeeeee
Confidence            34579999999885    34443          235667789999999999876 33 3355666666655666654

>1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain dehydrogenase, beta- oxidation, NADP, oxidoreductase; HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB: 1w73_A* 1w8d_A*

Probab=88.20  E-value=4.4  Score=32.99  Aligned_cols=59  Identities=19%  Similarity=0.245  Sum_probs=38.3

Q ss_pred             CCCeEEEEcCcchH---HHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHc-CCCCCcceEEeccCcccc
Q 026513           70 GGELFLDYGTGSGI---LGIAAIKFGAAMSVGADIDPQAIKSAHQNAALN-NIGPKKMKLHLVPDRTFT  134 (237)
Q Consensus        70 ~~~~vLDlG~G~G~---~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~-~~~~~~~~v~~~~~d~~~  134 (237)
                      .++++|-.|++.|.   ++..+++.| .+|++++.++..++...+.+... +.     ++.++.+|+.+
T Consensus        25 ~~k~vlITGasggiG~~la~~L~~~G-~~V~~~~r~~~~~~~~~~~l~~~~~~-----~~~~~~~Dl~~   87 (302)
T 1w6u_A           25 QGKVAFITGGGTGLGKGMTTLLSSLG-AQCVIASRKMDVLKATAEQISSQTGN-----KVHAIQCDVRD   87 (302)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHHHSS-----CEEEEECCTTC
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHHhcCC-----ceEEEEeCCCC
Confidence            36788888876552   333444555 46999999988777655555432 22     37788888864

>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}

Probab=88.18  E-value=6.2  Score=32.15  Aligned_cols=94  Identities=22%  Similarity=0.159  Sum_probs=57.1

Q ss_pred             CeEEEEcCcc-h-HHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEec------cCccccccccccccc
Q 026513           72 ELFLDYGTGS-G-ILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLV------PDRTFTASMNERVDG  143 (237)
Q Consensus        72 ~~vLDlG~G~-G-~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~------~~d~~~~~~~~~~~~  143 (237)
                      .+|.-+|+|. | .++..+++.|. +|+.+|.+++.++..++.    ++.     +...      ..+..+         
T Consensus         4 m~i~iiG~G~~G~~~a~~l~~~g~-~V~~~~r~~~~~~~~~~~----g~~-----~~~~~~~~~~~~~~~~---------   64 (316)
T 2ew2_A            4 MKIAIAGAGAMGSRLGIMLHQGGN-DVTLIDQWPAHIEAIRKN----GLI-----ADFNGEEVVANLPIFS---------   64 (316)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHH----CEE-----EEETTEEEEECCCEEC---------
T ss_pred             CeEEEECcCHHHHHHHHHHHhCCC-cEEEEECCHHHHHHHHhC----CEE-----EEeCCCeeEecceeec---------
Confidence            3688899986 3 33444555554 699999999877655433    321     1110      000000         


Q ss_pred             cccccccccccCCC-CCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEE
Q 026513          144 VVEDLSSHKIRGIS-QTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGI  193 (237)
Q Consensus       144 ~~~~~~~~~~~~~~-~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~lii  193 (237)
                               ..... .-..+|+|+...+-....+++..+...++++..++.
T Consensus        65 ---------~~~~~~~~~~~d~vi~~v~~~~~~~v~~~l~~~l~~~~~iv~  106 (316)
T 2ew2_A           65 ---------PEEIDHQNEQVDLIIALTKAQQLDAMFKAIQPMITEKTYVLC  106 (316)
T ss_dssp             ---------GGGCCTTSCCCSEEEECSCHHHHHHHHHHHGGGCCTTCEEEE
T ss_pred             ---------chhhcccCCCCCEEEEEeccccHHHHHHHHHHhcCCCCEEEE
Confidence                     00110 012789999988877778888889888988876554

>3op4_A 3-oxoacyl-[acyl-carrier protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE NAP; 1.60A {Vibrio cholerae o1 biovar el tor} SCOP: c.2.1.2 PDB: 3rsh_A* 3rro_A* 4i08_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A* 1i01_A* 1q7c_A* 2cf2_E

Probab=88.07  E-value=2.4  Score=33.77  Aligned_cols=82  Identities=13%  Similarity=0.187  Sum_probs=48.1

Q ss_pred             CCCeEEEEcCcchH---HHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccc
Q 026513           70 GGELFLDYGTGSGI---LGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVE  146 (237)
Q Consensus        70 ~~~~vLDlG~G~G~---~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  146 (237)
                      .++++|-.|++.|.   ++..+++.| .+|++++.++..++...+.+..        +..++..|+.+..   .+.++++
T Consensus         8 ~gk~~lVTGas~gIG~a~a~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~--------~~~~~~~Dv~d~~---~v~~~~~   75 (248)
T 3op4_A            8 EGKVALVTGASRGIGKAIAELLAERG-AKVIGTATSESGAQAISDYLGD--------NGKGMALNVTNPE---SIEAVLK   75 (248)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTT-CEEEEEESSHHHHHHHHHHHGG--------GEEEEECCTTCHH---HHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHhcc--------cceEEEEeCCCHH---HHHHHHH
Confidence            47788888877662   344455565 4599999998877766554432        1456677876432   1222222


Q ss_pred             ccccccccCCCCCCceeEEEEeCC
Q 026513          147 DLSSHKIRGISQTEKYDVVIANIL  170 (237)
Q Consensus       147 ~~~~~~~~~~~~~~~fD~I~~n~~  170 (237)
                      ...       ..-++.|+++.|..
T Consensus        76 ~~~-------~~~g~iD~lv~nAg   92 (248)
T 3op4_A           76 AIT-------DEFGGVDILVNNAG   92 (248)
T ss_dssp             HHH-------HHHCCCSEEEECCC
T ss_pred             HHH-------HHcCCCCEEEECCC
Confidence            110       00147899998764

>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis}

Probab=88.02  E-value=2.6  Score=33.95  Aligned_cols=89  Identities=12%  Similarity=0.082  Sum_probs=56.8

Q ss_pred             CCeEEEEcCcc-h-HHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccccc
Q 026513           71 GELFLDYGTGS-G-ILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDL  148 (237)
Q Consensus        71 ~~~vLDlG~G~-G-~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~  148 (237)
                      +.+|.-+|+|. | .++..++..|...|..+|.++..++.+.+..   ++       .. ..+..               
T Consensus        10 ~m~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~~~~~~~~~~~~~~---g~-------~~-~~~~~---------------   63 (266)
T 3d1l_A           10 DTPIVLIGAGNLATNLAKALYRKGFRIVQVYSRTEESARELAQKV---EA-------EY-TTDLA---------------   63 (266)
T ss_dssp             GCCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSHHHHHHHHHHT---TC-------EE-ESCGG---------------
T ss_pred             CCeEEEEcCCHHHHHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHc---CC-------ce-eCCHH---------------
Confidence            35799999985 3 3444555666555889999998776554321   22       11 11211               


Q ss_pred             ccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEE
Q 026513          149 SSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGI  193 (237)
Q Consensus       149 ~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~lii  193 (237)
                            ..  -...|+|+...+-....+++..+...+++|..++-
T Consensus        64 ------~~--~~~~Dvvi~av~~~~~~~v~~~l~~~~~~~~ivv~  100 (266)
T 3d1l_A           64 ------EV--NPYAKLYIVSLKDSAFAELLQGIVEGKREEALMVH  100 (266)
T ss_dssp             ------GS--CSCCSEEEECCCHHHHHHHHHHHHTTCCTTCEEEE
T ss_pred             ------HH--hcCCCEEEEecCHHHHHHHHHHHHhhcCCCcEEEE
Confidence                  11  23689999988777667888888878877765554

>3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.50A {Mycobacterium thermoresistibile}

Probab=87.97  E-value=1.9  Score=35.22  Aligned_cols=85  Identities=15%  Similarity=0.101  Sum_probs=48.8

Q ss_pred             CCCeEEEEcCcchH---HHHHHHHhCCCeEEEEeCCHH-------HHHHHHHHHHHcCCCCCcceEEeccCccccccccc
Q 026513           70 GGELFLDYGTGSGI---LGIAAIKFGAAMSVGADIDPQ-------AIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNE  139 (237)
Q Consensus        70 ~~~~vLDlG~G~G~---~~~~la~~~~~~v~~vD~s~~-------~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~  139 (237)
                      .++++|-.|++.|.   ++..+++.|. +|++++.++.       .++.+.+.+...+.     ++.++.+|+.+..   
T Consensus         8 ~~k~vlVTGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~Dv~~~~---   78 (285)
T 3sc4_A            8 RGKTMFISGGSRGIGLAIAKRVAADGA-NVALVAKSAEPHPKLPGTIYTAAKEIEEAGG-----QALPIVGDIRDGD---   78 (285)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHTTTC-EEEEEESCCSCCSSSCCCHHHHHHHHHHHTS-----EEEEEECCTTSHH---
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECChhhhhhhhHHHHHHHHHHHhcCC-----cEEEEECCCCCHH---
Confidence            46789999987762   3344555554 6999998875       34444444444332     4778888887532   


Q ss_pred             cccccccccccccccCCCCCCceeEEEEeCC
Q 026513          140 RVDGVVEDLSSHKIRGISQTEKYDVVIANIL  170 (237)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~  170 (237)
                      .+..+++...+       .-++.|++|.|..
T Consensus        79 ~v~~~~~~~~~-------~~g~id~lvnnAg  102 (285)
T 3sc4_A           79 AVAAAVAKTVE-------QFGGIDICVNNAS  102 (285)
T ss_dssp             HHHHHHHHHHH-------HHSCCSEEEECCC
T ss_pred             HHHHHHHHHHH-------HcCCCCEEEECCC
Confidence            12222221100       0147899998764

>1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2

Probab=87.92  E-value=4.4  Score=32.66  Aligned_cols=59  Identities=15%  Similarity=0.114  Sum_probs=38.0

Q ss_pred             CCCeEEEEcCcchH---HHHHHHHhCCCeEEEEeCCHHHHHHHHHHH-HHcCCCCCcceEEeccCcccc
Q 026513           70 GGELFLDYGTGSGI---LGIAAIKFGAAMSVGADIDPQAIKSAHQNA-ALNNIGPKKMKLHLVPDRTFT  134 (237)
Q Consensus        70 ~~~~vLDlG~G~G~---~~~~la~~~~~~v~~vD~s~~~i~~a~~~~-~~~~~~~~~~~v~~~~~d~~~  134 (237)
                      .++++|-.|++.|.   ++..+++.| .+|++++.++..++...+.+ ...+.     ++.++.+|+.+
T Consensus        20 ~~k~~lVTGas~gIG~~ia~~l~~~G-~~V~~~~r~~~~~~~~~~~l~~~~~~-----~~~~~~~Dl~~   82 (267)
T 1vl8_A           20 RGRVALVTGGSRGLGFGIAQGLAEAG-CSVVVASRNLEEASEAAQKLTEKYGV-----ETMAFRCDVSN   82 (267)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHHHCC-----CEEEEECCTTC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHHhcCC-----eEEEEEcCCCC
Confidence            46788888876652   333445555 46999999988776655544 32232     26677888764

>3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2

Probab=87.83  E-value=1.9  Score=34.48  Aligned_cols=84  Identities=15%  Similarity=0.103  Sum_probs=48.2

Q ss_pred             cCCCeEEEEcCc-chHHH----HHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccc
Q 026513           69 KGGELFLDYGTG-SGILG----IAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDG  143 (237)
Q Consensus        69 ~~~~~vLDlG~G-~G~~~----~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~  143 (237)
                      .++++||-.|++ +|.++    ..+++.|. +|+.++.+....+.+++.....+      .+.++.+|+.+..   .+..
T Consensus        12 ~~~k~vlITGa~~~~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~------~~~~~~~Dv~~~~---~v~~   81 (271)
T 3ek2_A           12 LDGKRILLTGLLSNRSIAYGIAKACKREGA-ELAFTYVGDRFKDRITEFAAEFG------SELVFPCDVADDA---QIDA   81 (271)
T ss_dssp             TTTCEEEECCCCSTTSHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHHHHHTT------CCCEEECCTTCHH---HHHH
T ss_pred             cCCCEEEEeCCCCCCcHHHHHHHHHHHcCC-CEEEEecchhhHHHHHHHHHHcC------CcEEEECCCCCHH---HHHH
Confidence            457899999975 23333    34445554 69999988766555555544433      1556778876432   1222


Q ss_pred             cccccccccccCCCCCCceeEEEEeC
Q 026513          144 VVEDLSSHKIRGISQTEKYDVVIANI  169 (237)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~fD~I~~n~  169 (237)
                      +++...+       .-++.|++|.|.
T Consensus        82 ~~~~~~~-------~~g~id~lv~nA  100 (271)
T 3ek2_A           82 LFASLKT-------HWDSLDGLVHSI  100 (271)
T ss_dssp             HHHHHHH-------HCSCEEEEEECC
T ss_pred             HHHHHHH-------HcCCCCEEEECC
Confidence            2222100       024789999865

>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A*

Probab=87.52  E-value=2.7  Score=37.45  Aligned_cols=97  Identities=20%  Similarity=0.191  Sum_probs=58.3

Q ss_pred             CCCeEEEEcCcc-h-HHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcc-----------eEEeccCcccccc
Q 026513           70 GGELFLDYGTGS-G-ILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKM-----------KLHLVPDRTFTAS  136 (237)
Q Consensus        70 ~~~~vLDlG~G~-G-~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~-----------~v~~~~~d~~~~~  136 (237)
                      ...+|.-+|+|. | .++..+++.|. +|+++|.+++.++..++.-  ..+.....           ++.+ ..|..   
T Consensus         7 ~~~~I~VIG~G~vG~~lA~~la~~G~-~V~~~d~~~~~v~~l~~~~--~~i~e~gl~~~l~~~~~~~~l~~-ttd~~---   79 (478)
T 2y0c_A            7 GSMNLTIIGSGSVGLVTGACLADIGH-DVFCLDVDQAKIDILNNGG--VPIHEPGLKEVIARNRSAGRLRF-STDIE---   79 (478)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHTTC--CSSCCTTHHHHHHHHHHTTCEEE-ECCHH---
T ss_pred             CCceEEEECcCHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHCCC--CCcCCCCHHHHHHHhcccCCEEE-ECCHH---
Confidence            457899999986 4 34445666654 5999999998887665431  00000000           0111 00100   


Q ss_pred             ccccccccccccccccccCCCCCCceeEEEEeCCh----------HHHHHHHHHHhHhcCCCeEEEE
Q 026513          137 MNERVDGVVEDLSSHKIRGISQTEKYDVVIANILL----------NPLLQLADHIVSYAKPGAVVGI  193 (237)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~----------~~~~~~l~~~~~~L~~gG~lii  193 (237)
                                        .  .-...|+||...+-          ....+.++.+...+++|..++.
T Consensus        80 ------------------~--a~~~aDvviiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~~~iVV~  126 (478)
T 2y0c_A           80 ------------------A--AVAHGDVQFIAVGTPPDEDGSADLQYVLAAARNIGRYMTGFKVIVD  126 (478)
T ss_dssp             ------------------H--HHHHCSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHCCSCEEEEE
T ss_pred             ------------------H--HhhcCCEEEEEeCCCcccCCCccHHHHHHHHHHHHHhcCCCCEEEE
Confidence                              0  01357999886554          6777888889999999877655

>3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A*

Probab=87.35  E-value=5.2  Score=33.20  Aligned_cols=34  Identities=18%  Similarity=0.072  Sum_probs=27.4

Q ss_pred             CCCeEEEEcCcc-hH-HHHHHHHhCCCeEEEEeCCH
Q 026513           70 GGELFLDYGTGS-GI-LGIAAIKFGAAMSVGADIDP  103 (237)
Q Consensus        70 ~~~~vLDlG~G~-G~-~~~~la~~~~~~v~~vD~s~  103 (237)
                      .+.+|+-+|||. |. .+.+|+..|..+++.+|.+.
T Consensus        35 ~~~~VlVvGaGGlGs~va~~La~aGVG~i~lvD~D~   70 (292)
T 3h8v_A           35 RTFAVAIVGVGGVGSVTAEMLTRCGIGKLLLFDYDK   70 (292)
T ss_dssp             GGCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred             hCCeEEEECcCHHHHHHHHHHHHcCCCEEEEECCCc
Confidence            356999999995 54 45577888999999999876

>3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 1.69A {Xanthomonas campestris PV}

Probab=87.19  E-value=2.5  Score=34.29  Aligned_cols=85  Identities=19%  Similarity=0.147  Sum_probs=48.8

Q ss_pred             CCCeEEEEcCcchH---HHHHHHHhCCCeEEEEeCCHHH-------HHHHHHHHHHcCCCCCcceEEeccCccccccccc
Q 026513           70 GGELFLDYGTGSGI---LGIAAIKFGAAMSVGADIDPQA-------IKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNE  139 (237)
Q Consensus        70 ~~~~vLDlG~G~G~---~~~~la~~~~~~v~~vD~s~~~-------i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~  139 (237)
                      .++++|-.|++.|.   ++..+++.|. +|+.++.+...       ++...+.+...+.     ++.++..|+.+..   
T Consensus         5 ~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~Dv~~~~---   75 (274)
T 3e03_A            5 SGKTLFITGASRGIGLAIALRAARDGA-NVAIAAKSAVANPKLPGTIHSAAAAVNAAGG-----QGLALKCDIREED---   75 (274)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCCSCCTTSCCCHHHHHHHHHHHTS-----EEEEEECCTTCHH---
T ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCC-EEEEEeccchhhhhhHHHHHHHHHHHHhcCC-----eEEEEeCCCCCHH---
Confidence            47789999988762   3445556665 68999887642       3333333333332     4778888887532   


Q ss_pred             cccccccccccccccCCCCCCceeEEEEeCC
Q 026513          140 RVDGVVEDLSSHKIRGISQTEKYDVVIANIL  170 (237)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~  170 (237)
                      .+..+++...+       .-++.|++|.|..
T Consensus        76 ~v~~~~~~~~~-------~~g~iD~lvnnAG   99 (274)
T 3e03_A           76 QVRAAVAATVD-------TFGGIDILVNNAS   99 (274)
T ss_dssp             HHHHHHHHHHH-------HHSCCCEEEECCC
T ss_pred             HHHHHHHHHHH-------HcCCCCEEEECCC
Confidence            12222221100       0147899998764

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=87.10  E-value=5.4  Score=32.52  Aligned_cols=111  Identities=13%  Similarity=0.103  Sum_probs=63.7

Q ss_pred             CeEEEEcCcc-h-HHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHc---------CCCCCcc-----eEEeccCccccc
Q 026513           72 ELFLDYGTGS-G-ILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALN---------NIGPKKM-----KLHLVPDRTFTA  135 (237)
Q Consensus        72 ~~vLDlG~G~-G-~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~---------~~~~~~~-----~v~~~~~d~~~~  135 (237)
                      ++|.-+|+|. | .++..++..|. +|+..|.+++.++.+++.+...         ++.....     ++.. ..|..  
T Consensus         5 ~kV~VIGaG~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~-~~~~~--   80 (283)
T 4e12_A            5 TNVTVLGTGVLGSQIAFQTAFHGF-AVTAYDINTDALDAAKKRFEGLAAVYEKEVAGAADGAAQKALGGIRY-SDDLA--   80 (283)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSHHHHHHHHHHHHHHHHHHHHHSTTCTTTHHHHHHHHCEE-ESCHH--
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHcCeEE-eCCHH--
Confidence            4688888886 2 34444555654 6999999999988877653221         1111000     0111 11110  


Q ss_pred             cccccccccccccccccccCCCCCCceeEEEEeCChH--HHHHHHHHHhHhcCCCeEEEEeccCCCCHHHHHHHH
Q 026513          136 SMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLN--PLLQLADHIVSYAKPGAVVGISGILSEQLPHIINRY  208 (237)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~~--~~~~~l~~~~~~L~~gG~liis~~~~~~~~~~~~~~  208 (237)
                                         ..  -...|+|+...+-.  ....++..+...++++..++-. --.-...++...+
T Consensus        81 -------------------~~--~~~aDlVi~av~~~~~~~~~v~~~l~~~~~~~~il~s~-tS~~~~~~la~~~  133 (283)
T 4e12_A           81 -------------------QA--VKDADLVIEAVPESLDLKRDIYTKLGELAPAKTIFATN-SSTLLPSDLVGYT  133 (283)
T ss_dssp             -------------------HH--TTTCSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEEC-CSSSCHHHHHHHH
T ss_pred             -------------------HH--hccCCEEEEeccCcHHHHHHHHHHHHhhCCCCcEEEEC-CCCCCHHHHHhhc
Confidence                               00  24689999877654  5667888898899988766532 2222345555544

>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}

Probab=87.06  E-value=4.1  Score=35.93  Aligned_cols=111  Identities=14%  Similarity=0.050  Sum_probs=61.1

Q ss_pred             CeEEEEcCcc-h-HHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCc-----------ceEEeccCcccccccc
Q 026513           72 ELFLDYGTGS-G-ILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKK-----------MKLHLVPDRTFTASMN  138 (237)
Q Consensus        72 ~~vLDlG~G~-G-~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~-----------~~v~~~~~d~~~~~~~  138 (237)
                      .+|.-+|+|. | .++..+++.| .+|+++|.++..++..++..  .......           -++.+ ..|..     
T Consensus         3 mkI~VIG~G~vG~~lA~~La~~G-~~V~~~D~~~~~v~~l~~g~--~~i~e~gl~~~l~~~~~~~~l~~-t~d~~-----   73 (450)
T 3gg2_A            3 LDIAVVGIGYVGLVSATCFAELG-ANVRCIDTDRNKIEQLNSGT--IPIYEPGLEKMIARNVKAGRLRF-GTEIE-----   73 (450)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTT-CEEEEECSCHHHHHHHHHTC--SCCCSTTHHHHHHHHHHTTSEEE-ESCHH-----
T ss_pred             CEEEEECcCHHHHHHHHHHHhcC-CEEEEEECCHHHHHHHHcCC--CcccCCCHHHHHHhhcccCcEEE-ECCHH-----
Confidence            3677888875 3 2333455555 46999999998887665421  1100000           00111 01110     


Q ss_pred             ccccccccccccccccCCCCCCceeEEEEeCChH----------HHHHHHHHHhHhcCCCeEEEEe-ccCCCCHHHHHHH
Q 026513          139 ERVDGVVEDLSSHKIRGISQTEKYDVVIANILLN----------PLLQLADHIVSYAKPGAVVGIS-GILSEQLPHIINR  207 (237)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~~----------~~~~~l~~~~~~L~~gG~liis-~~~~~~~~~~~~~  207 (237)
                                      ..  -...|+|+...+-.          .+...++.+...+++|..++.. ++......++...
T Consensus        74 ----------------ea--~~~aDvViiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~g~iVV~~STv~pgt~~~l~~~  135 (450)
T 3gg2_A           74 ----------------QA--VPEADIIFIAVGTPAGEDGSADMSYVLDAARSIGRAMSRYILIVTKSTVPVGSYRLIRKA  135 (450)
T ss_dssp             ----------------HH--GGGCSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHCCSCEEEEECSCCCTTHHHHHHHH
T ss_pred             ----------------HH--HhcCCEEEEEcCCCcccCCCcChHHHHHHHHHHHhhCCCCCEEEEeeeCCCcchHHHHHH
Confidence                            00  13579998765533          6778888899999888777653 4333334444444


Q ss_pred             Hh
Q 026513          208 YS  209 (237)
Q Consensus       208 ~~  209 (237)
                      +.
T Consensus       136 l~  137 (450)
T 3gg2_A          136 IQ  137 (450)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli}

Probab=87.06  E-value=3.3  Score=33.68  Aligned_cols=82  Identities=24%  Similarity=0.232  Sum_probs=48.2

Q ss_pred             CCCeEEEEcCcchH---HHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccc
Q 026513           70 GGELFLDYGTGSGI---LGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVE  146 (237)
Q Consensus        70 ~~~~vLDlG~G~G~---~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  146 (237)
                      .++++|-.|++.|.   ++..+++.|. +|+.+|.++..++...+.+   +.     ++.++.+|+.+..   .+..+++
T Consensus        26 ~~k~vlVTGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~---~~-----~~~~~~~Dv~d~~---~v~~~~~   93 (277)
T 4dqx_A           26 NQRVCIVTGGGSGIGRATAELFAKNGA-YVVVADVNEDAAVRVANEI---GS-----KAFGVRVDVSSAK---DAESMVE   93 (277)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHH---CT-----TEEEEECCTTCHH---HHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHh---CC-----ceEEEEecCCCHH---HHHHHHH
Confidence            47789999987662   3444555654 6999999987766544432   21     2667788876432   1122221


Q ss_pred             ccccccccCCCCCCceeEEEEeCC
Q 026513          147 DLSSHKIRGISQTEKYDVVIANIL  170 (237)
Q Consensus       147 ~~~~~~~~~~~~~~~fD~I~~n~~  170 (237)
                      ...       ..-++.|++|.|..
T Consensus        94 ~~~-------~~~g~iD~lv~nAg  110 (277)
T 4dqx_A           94 KTT-------AKWGRVDVLVNNAG  110 (277)
T ss_dssp             HHH-------HHHSCCCEEEECCC
T ss_pred             HHH-------HHcCCCCEEEECCC
Confidence            110       00147899998764

>2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A*

Probab=87.03  E-value=2  Score=34.91  Aligned_cols=59  Identities=14%  Similarity=0.061  Sum_probs=39.4

Q ss_pred             CCCeEEEEcCcchH---HHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccc
Q 026513           70 GGELFLDYGTGSGI---LGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFT  134 (237)
Q Consensus        70 ~~~~vLDlG~G~G~---~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~  134 (237)
                      .++++|-.|++.|.   ++..+++.| .+|++++.++..++...+.+...+.     ++.++.+|+.+
T Consensus        21 ~~k~vlVTGas~gIG~~ia~~l~~~G-~~V~~~~r~~~~~~~~~~~l~~~~~-----~~~~~~~Dv~~   82 (277)
T 2rhc_B           21 DSEVALVTGATSGIGLEIARRLGKEG-LRVFVCARGEEGLRTTLKELREAGV-----EADGRTCDVRS   82 (277)
T ss_dssp             TSCEEEEETCSSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHTTC-----CEEEEECCTTC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhcCC-----ceEEEECCCCC
Confidence            36789988877652   333445555 4699999999877766655554432     26777888764

>1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2

Probab=87.02  E-value=2.1  Score=34.71  Aligned_cols=86  Identities=12%  Similarity=0.125  Sum_probs=50.5

Q ss_pred             CCCeEEEEcCcchH---HHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccc
Q 026513           70 GGELFLDYGTGSGI---LGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVE  146 (237)
Q Consensus        70 ~~~~vLDlG~G~G~---~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  146 (237)
                      .++++|-.|++.|.   ++..+++.| .+|++++.++..++.+.+.+...+.     ++.++.+|+.+..   .+..+++
T Consensus        20 ~~k~vlVTGas~gIG~aia~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~-----~~~~~~~D~~~~~---~~~~~~~   90 (273)
T 1ae1_A           20 KGTTALVTGGSKGIGYAIVEELAGLG-ARVYTCSRNEKELDECLEIWREKGL-----NVEGSVCDLLSRT---ERDKLMQ   90 (273)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHTTC-----CEEEEECCTTCHH---HHHHHHH
T ss_pred             CCCEEEEECCcchHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhcCC-----ceEEEECCCCCHH---HHHHHHH
Confidence            46789988876652   333445555 4699999998877766555554432     2677788876432   1111111


Q ss_pred             ccccccccCCCCCCceeEEEEeCC
Q 026513          147 DLSSHKIRGISQTEKYDVVIANIL  170 (237)
Q Consensus       147 ~~~~~~~~~~~~~~~fD~I~~n~~  170 (237)
                      ...    ..+  .++.|++|.|..
T Consensus        91 ~~~----~~~--~g~id~lv~nAg  108 (273)
T 1ae1_A           91 TVA----HVF--DGKLNILVNNAG  108 (273)
T ss_dssp             HHH----HHT--TSCCCEEEECCC
T ss_pred             HHH----HHc--CCCCcEEEECCC
Confidence            100    000  257899998763

>3ged_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3geg_A*

Probab=86.87  E-value=5  Score=32.35  Aligned_cols=79  Identities=18%  Similarity=0.219  Sum_probs=47.2

Q ss_pred             CeEEEEcCcchH---HHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccccc
Q 026513           72 ELFLDYGTGSGI---LGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDL  148 (237)
Q Consensus        72 ~~vLDlG~G~G~---~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~  148 (237)
                      ++||--|+++|.   ++..+++.| .+|+.+|.+++.++...+    .+ .    ++.++++|+.+..   .++.+++.-
T Consensus         3 K~vlVTGas~GIG~aia~~la~~G-a~V~~~~~~~~~~~~~~~----~~-~----~~~~~~~Dv~~~~---~v~~~v~~~   69 (247)
T 3ged_A            3 RGVIVTGGGHGIGKQICLDFLEAG-DKVCFIDIDEKRSADFAK----ER-P----NLFYFHGDVADPL---TLKKFVEYA   69 (247)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHT----TC-T----TEEEEECCTTSHH---HHHHHHHHH
T ss_pred             CEEEEecCCCHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHH----hc-C----CEEEEEecCCCHH---HHHHHHHHH
Confidence            578888888873   444556665 459999999877654332    12 2    2667788887532   122222211


Q ss_pred             ccccccCCCCCCceeEEEEeCC
Q 026513          149 SSHKIRGISQTEKYDVVIANIL  170 (237)
Q Consensus       149 ~~~~~~~~~~~~~fD~I~~n~~  170 (237)
                             ...-++.|+++.|..
T Consensus        70 -------~~~~g~iDiLVNNAG   84 (247)
T 3ged_A           70 -------MEKLQRIDVLVNNAC   84 (247)
T ss_dssp             -------HHHHSCCCEEEECCC
T ss_pred             -------HHHcCCCCEEEECCC
Confidence                   000257999998773

>3icc_A Putative 3-oxoacyl-(acyl carrier protein) reducta; structural genomics, putative 3-oxoacyl-(acyl carrier protei reductase, oxidoreductase; HET: NAP MES; 1.87A {Bacillus anthracis str}

Probab=86.57  E-value=4.1  Score=32.17  Aligned_cols=59  Identities=14%  Similarity=0.037  Sum_probs=36.0

Q ss_pred             CCCeEEEEcCcchH---HHHHHHHhCCCeEEE-EeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccc
Q 026513           70 GGELFLDYGTGSGI---LGIAAIKFGAAMSVG-ADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFT  134 (237)
Q Consensus        70 ~~~~vLDlG~G~G~---~~~~la~~~~~~v~~-vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~  134 (237)
                      .++++|-.|++.|.   ++..+++.|.. |+. ..-++...+...+.+...+.     ++.++..|..+
T Consensus         6 ~~k~vlITGas~gIG~~~a~~l~~~G~~-v~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~D~~~   68 (255)
T 3icc_A            6 KGKVALVTGASRGIGRAIAKRLANDGAL-VAIHYGNRKEEAEETVYEIQSNGG-----SAFSIGANLES   68 (255)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCE-EEEEESSCSHHHHHHHHHHHHTTC-----EEEEEECCTTS
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCe-EEEEeCCchHHHHHHHHHHHhcCC-----ceEEEecCcCC
Confidence            46788888887762   34445556654 555 46666666655555554432     36677788764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	237
d2nxca1	254	c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT	3e-25
d1wy7a1	201	c.66.1.32 (A:4-204) Hypothetical protein PH1948 {A	1e-07
d1l3ia_	186	c.66.1.22 (A:) Precorrin-6Y methyltransferase (Cbi	3e-07
d1u2za_	406	c.66.1.31 (A:) Catalytic, N-terminal domain of his	6e-07
d1ne2a_	197	c.66.1.32 (A:) Hypothetical protein Ta1320 {Archae	1e-06
d1nw3a_	328	c.66.1.31 (A:) Catalytic, N-terminal domain of his	2e-06
d2dula1	375	c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tR	5e-06
d2frna1	260	c.66.1.47 (A:19-278) Hypothetical protein PH0793 {	1e-05
d2fyta1	311	c.66.1.6 (A:238-548) Protein arginine N-methyltran	4e-05
d2a14a1	257	c.66.1.15 (A:5-261) Indolethylamine N-methyltransf	1e-04
d1g6q1_	328	c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Ba	1e-04
d2h00a1	250	c.66.1.54 (A:5-254) Methyltransferase 10 domain co	3e-04
d2igta1	309	c.66.1.51 (A:1-309) Putative methyltransferase Atu	4e-04
d1oria_	316	c.66.1.6 (A:) Protein arginine N-methyltransferase	8e-04
d1ri5a_	252	c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransf	0.001

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} Length = 254

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

 Score = 97.6 bits (242), Expect = 3e-25
 Identities = 54/229 (23%), Positives = 93/229 (40%), Gaps = 30/229 (13%)

Query: 3   EQCNWIKKTQQSFHPVEVTKGLWIVPEWGAPPDVQATNIILNPGLAFGSGEHATTKLCLL 62
              +W++  ++   P        ++  W      +   +++ PG+AFG+G H TT+L L 
Sbjct: 55  GDEDWLEAWRRDLKPALAPP-FVVLAPWHTWEGAE-IPLVIEPGMAFGTGHHETTRLALK 112

Query: 63  LLRRLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKK 122
            L R ++ G+  LD GTGSG+L IAA K G    +G DIDP  +  A  NA  N      
Sbjct: 113 ALARHLRPGDKVLDLGTGSGVLAIAAEKLGGKA-LGVDIDPMVLPQAEANAKRNG----- 166

Query: 123 MKLHLVPDRTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIV 182
                V  R    S+   +                    +D+++AN+       LA    
Sbjct: 167 -----VRPRFLEGSLEAALP----------------FGPFDLLVANLYAELHAALAPRYR 205

Query: 183 SYAKPGAVVGISGILSEQLPHIINRYSEF-LEDILVSEMDDWTCVSGKK 230
               PG    ++GIL ++ P +    +      +  +   +W  ++  +
Sbjct: 206 EALVPGGRALLTGILKDRAPLVREAMAGAGFRPLEEAAEGEWVLLAYGR 254

>d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 201

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein PH1948
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

 Score = 48.3 bits (114), Expect = 1e-07
 Identities = 33/176 (18%), Positives = 63/176 (35%), Gaps = 13/176 (7%)

Query: 49  FGSGEHATTKLCLLLLRRLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKS 108
           + +  +A ++L  L        G++  D G G+G+L   A+  GA   +  ++D +A+  
Sbjct: 25  YRTPGNAASELLWLAYSLGDIEGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDV 84

Query: 109 AHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIA- 167
             +N         K K+ +     F    N RVD V+ +      R  +           
Sbjct: 85  LIENLGEFKG---KFKVFIGDVSEF----NSRVDIVIMNPPFGSQRKHADRPFLLKAFEI 137

Query: 168 ----NILLNPLLQLADHIVSYAKP-GAVVGISGILSEQLPHIINRYSEFLEDILVS 218
                 +     ++   I  ++   G VV        ++P     + + LE I V 
Sbjct: 138 SDVVYSIHLAKPEVRRFIEKFSWEHGFVVTHRLTTKIEIPLQFFFHRKKLERITVD 193

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 186

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

 Score = 46.7 bits (110), Expect = 3e-07
 Identities = 22/151 (14%), Positives = 48/151 (31%), Gaps = 25/151 (16%)

Query: 62  LLLRRL-IKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGP 120
           L++        ++ +D G G+G + +        +    D +P+AI +   N   + +G 
Sbjct: 24  LIMCLAEPGKNDVAVDVGCGTGGVTLELAGRVRRV-YAIDRNPEAISTTEMNLQRHGLGD 82

Query: 121 KKMKLHLVPDRTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLNPLLQLADH 180
                               V  +  D        + +    D+ +       L ++   
Sbjct: 83  -------------------NVTLMEGDA----PEALCKIPDIDIAVVGGSGGELQEILRI 119

Query: 181 IVSYAKPGAVVGISGILSEQLPHIINRYSEF 211
           I    KPG  + ++ IL E     +    + 
Sbjct: 120 IKDKLKPGGRIIVTAILLETKFEAMECLRDL 150

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 406

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 47.0 bits (111), Expect = 6e-07
 Identities = 36/171 (21%), Positives = 59/171 (34%), Gaps = 17/171 (9%)

Query: 63  LLRRL-IKGGELFLDYGTGSG-ILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGP 120
           + ++  +K G+ F+D G+G G  +  AA++ G A+S G +I   A               
Sbjct: 208 VYQQCQLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRC 267

Query: 121 KKMKLHLVPDRTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLNP--LLQLA 178
           K   + L              + V E +              DV++ N  L    L +  
Sbjct: 268 KLYGMRLNNVEFSLKKSFVDNNRVAELIPQ-----------CDVILVNNFLFDEDLNKKV 316

Query: 179 DHIVSYAKPGAVVGISGILSEQLPHIINRYSEFLEDIL-VSEMDDWT-CVS 227
           + I+  AK G  +     L      I     E + + L V   D     VS
Sbjct: 317 EKILQTAKVGCKIISLKSLRSLTYQINFYNVENIFNRLKVQRYDLKEDSVS 367

>d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 197

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein Ta1320
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 45.5 bits (107), Expect = 1e-06
 Identities = 34/147 (23%), Positives = 51/147 (34%), Gaps = 8/147 (5%)

Query: 71  GELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPD 130
           G   +D GTG+GIL   +   GA      DIDP AI++A +N    N       +  +  
Sbjct: 49  GRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNCGGVNF--MVADVSEISG 106

Query: 131 RTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAV 190
           +  T  MN     VV+      I    +T  +   I N       +  D +         
Sbjct: 107 KYDTWIMNPPFGSVVKHSDRAFIDKAFETSMWIYSIGNA------KARDFLRREFSARGD 160

Query: 191 VGISGILSEQLPHIINRYSEFLEDILV 217
           V     +   +P I   +S     I  
Sbjct: 161 VFREEKVYITVPRIYRHHSYDRARIEA 187

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} Length = 328

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.2 bits (106), Expect = 2e-06
 Identities = 34/200 (17%), Positives = 59/200 (29%), Gaps = 21/200 (10%)

Query: 43  LNPGLAFGSGEHATTKLCLL--LLRRL-IKGGELFLDYGTGSGILGI-AAIKFGAAMSVG 98
           LN    F    +  T   L+  ++  + +   +LF+D G+G G + +  A         G
Sbjct: 121 LNNYEPFSPEVYGETSFDLVAQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYG 180

Query: 99  ADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDLSSHKIRGISQ 158
            +      K A           K MK +      +T          +E           +
Sbjct: 181 VEKADIPAKYAETMDREFR---KWMKWYGKKHAEYT----------LERGDFLSEEWRER 227

Query: 159 TEKYDVVIANILL--NPLLQLADHIVSYAKPGAVVGISGILSEQLPHIINRY-SEFLEDI 215
                V+  N       +        +  K G  +  S   +     I +R  S+    +
Sbjct: 228 IANTSVIFVNNFAFGPEVDHQLKERFANMKEGGRIVSSKPFAPLNFRINSRNLSDIGTIM 287

Query: 216 LVSEMDDWTC-VSGKKKRVK 234
            V E+      VS   K V 
Sbjct: 288 RVVELSPLKGSVSWTGKPVS 307

>d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]} Length = 375

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TRM1-like
domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 44.6 bits (105), Expect = 5e-06
 Identities = 25/108 (23%), Positives = 46/108 (42%), Gaps = 14/108 (12%)

Query: 18  VEVTKGL--WIVPEWGAPPDVQATNIILNPGLAFGSGEHATTKLCLLLLRRLIKGGELFL 75
           +EV +G    ++P+      +  + +  NP +A          + ++LL  L    ++ L
Sbjct: 2   IEVQEGKAKILIPK---AESIYDSPVFYNPRMALNR------DIVVVLLNIL--NPKIVL 50

Query: 76  DYGTGSGILGI-AAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKK 122
           D  + +GI GI  A++  A      DI   A +   +N  LN  G  +
Sbjct: 51  DALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELR 98

>d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]} Length = 260

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Met-10+ protein-like
domain: Hypothetical protein PH0793
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 42.5 bits (99), Expect = 1e-05
 Identities = 28/171 (16%), Positives = 57/171 (33%), Gaps = 29/171 (16%)

Query: 64  LRRLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKM 123
           + ++ K  EL +D   G G L +    +G A  +  + DP   K   +N  LN       
Sbjct: 101 MAKVAKPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNK------ 154

Query: 124 KLHLVPDRTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVS 183
                        + +R+     D      R        D ++   ++     +    +S
Sbjct: 155 -------------VEDRMSAYNMD-----NRDFPGENIADRILMGYVVRTHEFI-PKALS 195

Query: 184 YAKPGAVVGISGILSEQLPHIINRYSEFLEDILVSEMDDWTCVSGKKKRVK 234
            AK GA++     + E    +     E  + I  ++   +      + ++K
Sbjct: 196 IAKDGAIIHYHNTVPE--KLMPREPFETFKRI--TKEYGYDVEKLNELKIK 242

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} Length = 311

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.4 bits (96), Expect = 4e-05
 Identities = 14/75 (18%), Positives = 26/75 (34%)

Query: 68  IKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHL 127
           I   ++ LD G G+GIL + A K GA   +G D      ++              +    
Sbjct: 33  IFKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSEILYQAMDIIRLNKLEDTITLIKGK 92

Query: 128 VPDRTFTASMNERVD 142
           + +        + + 
Sbjct: 93  IEEVHLPVEKVDVII 107

>d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} Length = 257

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Indolethylamine N-methyltransferase, INMT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.0 bits (92), Expect = 1e-04
 Identities = 20/172 (11%), Positives = 45/172 (26%), Gaps = 18/172 (10%)

Query: 53  EHATTKLCLLLLRRLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQN 112
           +     L        ++G  L +D G+G  I  + A          +D   +  +   + 
Sbjct: 35  KFNLECLHKTFGPGGLQGDTL-IDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKW 93

Query: 113 AALNNIGPKKMK-----LHLVPDRTFTASMNERVDGVVEDLSSHKIRG-----ISQTEKY 162
                              L  +        E++   V+ +    +        +     
Sbjct: 94  LKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLRAAVKRVLKCDVHLGNPLAPAVLPLA 153

Query: 163 DVVIANILLN-------PLLQLADHIVSYAKPGAVVGISGILSEQLPHIINR 207
           D V+  + +               ++ S  KPG  +  +  L      +  R
Sbjct: 154 DCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLRLPSYMVGKR 205

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 328

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.8 bits (92), Expect = 1e-04
 Identities = 14/75 (18%), Positives = 26/75 (34%)

Query: 68  IKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHL 127
           +   ++ LD G G+GIL + A K GA   +G D+      +              +    
Sbjct: 36  LFKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMSSIIEMAKELVELNGFSDKITLLRGK 95

Query: 128 VPDRTFTASMNERVD 142
           + D        + + 
Sbjct: 96  LEDVHLPFPKVDIII 110

>d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]} Length = 250

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Methyltransferase 10 domain
domain: Methyltransferase 10 domain containing protein METT10D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.6 bits (89), Expect = 3e-04
 Identities = 21/174 (12%), Positives = 45/174 (25%), Gaps = 34/174 (19%)

Query: 74  FLDYGTGSGILGIA-AIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRT 132
            +D GTG+  +             +  ++D      A +N   NN+      + +     
Sbjct: 65  GIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTL 124

Query: 133 FTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILL----NPLLQLADHIVSYAKPG 188
              ++ E  +                   YD  + N            +         P 
Sbjct: 125 LMDALKEESEI-----------------IYDFCMCNPPFFANQLEAKGVNSRNPRRPPPS 167

Query: 189 AVVGISGILSEQLPH-------IINRYSEFLEDILVSEMDDWTCVSGKKKRVKE 235
           +V                    II+   +  + +       ++C+ GKK  +  
Sbjct: 168 SVNTGGITEIMAEGGELEFVKRIIHDSLQLKKRLRW-----YSCMLGKKCSLAP 216

>d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]} Length = 309

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Putative methyltransferase Atu0340
species: Agrobacterium tumefaciens [TaxId: 358]

 Score = 38.2 bits (88), Expect = 4e-04
 Identities = 19/144 (13%), Positives = 42/144 (29%), Gaps = 23/144 (15%)

Query: 25  WIVPEWGAPPDVQATNIILNPGLAFGSGEHATTKLCLLLLRRLIKGGELFLDYGTGSGIL 84
           W +   G     + T       +     +    +     +    +  +  L+    +G+ 
Sbjct: 91  WPLSLLGVEFLGRFTA---FRHVGVFPEQIVHWEWLKNAVETADRPLK-VLNLFGYTGVA 146

Query: 85  GIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGV 144
            + A   GA +    D   +AI  A +N  L  +    ++                    
Sbjct: 147 SLVAAAAGAEV-THVDASKKAIGWAKENQVLAGLEQAPIRWI------------------ 187

Query: 145 VEDLSSHKIRGISQTEKYDVVIAN 168
            ED      R   +   YD+++ +
Sbjct: 188 CEDAMKFIQREERRGSTYDIILTD 211

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 316

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 37.5 bits (86), Expect = 8e-04
 Identities = 14/62 (22%), Positives = 26/62 (41%)

Query: 62  LLLRRLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPK 121
           +   R +   ++ LD G+G+GIL + A K GA   +G +    +  +     A       
Sbjct: 25  MFHNRHLFKDKVVLDVGSGTGILCMFAAKAGARKVIGIECSSISDYAVKIVKANKLDHVV 84

Query: 122 KM 123
            +
Sbjct: 85  TI 86

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} Length = 252

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

 Score = 36.5 bits (83), Expect = 0.001
 Identities = 16/59 (27%), Positives = 21/59 (35%)

Query: 62  LLLRRLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGP 120
            L+R   K G+  LD G G G   +   + G     G DI   +I  A   A       
Sbjct: 16  CLIRLYTKRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRF 74

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	237
d2nxca1	254	PrmA-like protein TTHA0656 (TT0836) {Thermus therm	100.0
d1dusa_	194	Hypothetical protein MJ0882 {Archaeon Methanococcu	99.85
d1xxla_	234	Hypothetical protein YcgJ {Bacillus subtilis [TaxI	99.81
d1l3ia_	186	Precorrin-6Y methyltransferase (CbiT) {Archaeon Me	99.79
d2b3ta1	274	N5-glutamine methyltransferase, HemK {Escherichia	99.79
d1nkva_	245	Hypothetical Protein YjhP {Escherichia coli [TaxId	99.77
d1vl5a_	231	Hypothetical protein BH2331 {Bacillus halodurans [	99.77
d2b78a2	317	Hypothetical protein SMu776, middle and C-terminal	99.75
d2as0a2	324	Hypothetical protein PH1915, middle and C-terminal	99.75
d1ve3a1	226	Hypothetical protein PH0226 {Archaeon Pyrococcus h	99.74
d1im8a_	225	Hypothetical protein HI0319 (YecO) {Haemophilus in	99.73
d1ri5a_	252	mRNA cap (Guanine N-7) methyltransferase {Fungus (	99.73
d2o57a1	282	Putative sarcosine dimethylglycine methyltransfera	99.72
d1wxxa2	318	Hypothetical protein TTHA1280, middle and C-termin	99.72
d2ex4a1	222	Adrenal gland protein AD-003 (C9orf32) {Human (Hom	99.71
d2fk8a1	280	Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri	99.71
d1kpia_	291	CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}	99.7
d1y8ca_	246	Putative methyltransferase CAC2371 {Clostridium ac	99.7
d2igta1	309	Putative methyltransferase Atu0340 {Agrobacterium	99.69
d1wzna1	251	Hypothetical methyltransferase PH1305 {Archaeon Py	99.69
d2i6ga1	198	Putative methyltransferase TehB {Salmonella typhim	99.69
d1uwva2	358	rRNA (Uracil-5-)-methyltransferase RumA, catalytic	99.68
d1yb2a1	250	Hypothetical protein Ta0852 {Thermoplasma acidophi	99.67
d1kpga_	285	CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}	99.66
d2frna1	260	Hypothetical protein PH0793 {Pyrococcus horikoshii	99.66
d2esra1	152	Putative methyltransferase SPy1538 {Streptococcus	99.66
d2fpoa1	183	Methylase YhhF {Escherichia coli [TaxId: 562]}	99.64
d2a14a1	257	Indolethylamine N-methyltransferase, INMT {Human (	99.64
d2avna1	246	Hypothetical methyltransferase TM1389 {Thermotoga	99.63
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	99.63
d1ws6a1	171	Methyltransferase TTHA0928 {Thermus thermophilus [	99.63
d1nv8a_	271	N5-glutamine methyltransferase, HemK {Thermotoga m	99.63
d1xtpa_	254	Hypothetical protein Lmaj004091aaa (LmjF30.0810) {	99.62
d1i9ga_	264	Probable methyltransferase Rv2118c {Mycobacterium	99.61
d1o54a_	266	Hypothetical protein TM0748 {Thermotoga maritima [	99.61
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	99.6
d1zx0a1	229	Guanidinoacetate methyltransferase {Human (Homo sa	99.6
d1dl5a1	213	Protein-L-isoaspartyl O-methyltransferase {Thermot	99.6
d2gh1a1	281	Methyltransferase BC2162 {Bacillus cereus [TaxId:	99.59
d2fhpa1	182	Putative methylase EF2452 {Enterococcus faecalis [	99.58
d2p7ia1	225	Hypothetical protein ECA1738 {Erwinia carotovora [	99.58
d1wy7a1	201	Hypothetical protein PH1948 {Archaeon Pyrococcus h	99.58
d1i1na_	224	Protein-L-isoaspartyl O-methyltransferase {Human (	99.57
d2fcaa1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil	99.57
d1xvaa_	292	Glycine N-methyltransferase {Rat (Rattus norvegicu	99.55
d1nt2a_	209	Fibrillarin homologue {Archaeon Archaeoglobus fulg	99.54
d1g8aa_	227	Fibrillarin homologue {Archaeon Pyrococcus horikos	99.54
d2h00a1	250	Methyltransferase 10 domain containing protein MET	99.53
d1tw3a2	253	Carminomycin 4-O-methyltransferase {Streptomyces p	99.52
d1yzha1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep	99.52
d1g6q1_	328	Arginine methyltransferase, HMT1 {Baker's yeast (S	99.52
d1p91a_	268	rRNA methyltransferase RlmA {Escherichia coli [Tax	99.51
d1ne2a_	197	Hypothetical protein Ta1320 {Archaeon Thermoplasma	99.51
d1jg1a_	215	Protein-L-isoaspartyl O-methyltransferase {Archaeo	99.5
d1oria_	316	Protein arginine N-methyltransferase 1, PRMT1 {Rat	99.5
d1vbfa_	224	Protein-L-isoaspartyl O-methyltransferase {Sulfolo	99.5
d2b25a1	324	Hypothetical protein FLJ20628 {Human (Homo sapiens	99.5
d1g8sa_	230	Fibrillarin homologue {Archaeon Methanococcus jann	99.5
d2fyta1	311	Protein arginine N-methyltransferase 3, PRMT3 {Hum	99.49
d1vlma_	208	Possible histamine N-methyltransferase TM1293 {The	99.49
d2ifta1	183	Putative methylase HI0767 {Haemophilus influenzae	99.48
d2g72a1	263	Phenylethanolamine N-methyltransferase, PNMTase {H	99.44
d1qzza2	256	Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu	99.43
d1r18a_	223	Protein-L-isoaspartyl O-methyltransferase {Fruit f	99.42
d1nw3a_	328	Catalytic, N-terminal domain of histone methyltran	99.35
d2avda1	219	COMT domain-containing protein 1, COMTD1 {Human (H	99.35
d1jqea_	280	Histamine methyltransferase {Human (Homo sapiens)	99.33
d1u2za_	406	Catalytic, N-terminal domain of histone methyltran	99.33
d2cl5a1	214	Catechol O-methyltransferase, COMT {Rat (Rattus no	99.31
d1mjfa_	276	Putative spermidine synthetase PF0127 (SpeE) {Arch	99.28
d1susa1	227	Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag	99.25
d2f8la1	328	Hypothetical protein Lmo1582 {Listeria monocytogen	99.25
d1inla_	295	Spermidine synthase {Thermotoga maritima [TaxId: 2	99.2
d1iy9a_	274	Spermidine synthase {Bacillus subtilis [TaxId: 142	99.18
d2o07a1	285	Spermidine synthase {Human (Homo sapiens) [TaxId:	99.18
d1m6ya2	192	TM0872, methyltransferase domain {Thermotoga marit	99.18
d1uira_	312	Spermidine synthase {Thermus thermophilus [TaxId:	99.17
d2b2ca1	312	Spermidine synthase {Caenorhabditis elegans [TaxId	99.17
d1xj5a_	290	Spermidine synthase {Thale cress (Arabidopsis thal	99.08
d1sqga2	284	Ribosomal RNA small subunit methyltransferase B, R	99.04
d2dula1	375	N(2),N(2)-dimethylguanosine tRNA methyltransferase	99.03
d1ixka_	313	Hypothetical methyltransferase PH1374 {Archaeon Py	99.0
d1ej0a_	180	RNA methyltransferase FtsJ {Escherichia coli [TaxI	98.94
d1qama_	235	rRNA adenine dimethylase {Bacillus subtilis, Ermc'	98.92
d2b9ea1	293	NOL1R {Human (Homo sapiens) [TaxId: 9606]}	98.89
d1jsxa_	207	Glucose-inhibited division protein B (GidB) {Esche	98.88
d1af7a2	193	Chemotaxis receptor methyltransferase CheR, C-term	98.88
d2ih2a1	223	DNA methylase TaqI, N-terminal domain {Thermus aqu	98.86
d1yuba_	245	rRNA adenine dimethylase {Streptococcus pneumoniae	98.84
d2okca1	425	Type I restriction enzyme StySJI M protein {Bacter	98.83
d1fp1d2	244	Chalcone O-methyltransferase {Alfalfa (Medicago sa	98.72
d1zq9a1	278	Probable dimethyladenosine transferase {Human (Hom	98.65
d1xdza_	239	Glucose-inhibited division protein B (GidB) {Bacil	98.63
d1wg8a2	182	TM0872, methyltransferase domain {Thermus thermoph	98.59
d2ar0a1	524	M.EcoKI {Escherichia coli [TaxId: 562]}	98.58
d1qyra_	252	High level kasugamycin resistance protein KsgA {Es	98.35
d1fp2a2	244	Isoflavone O-methyltransferase {Alfalfa (Medicago	98.34
d1o9ga_	249	rRNA methyltransferase AviRa {Streptomyces viridoc	98.19
d1kyza2	243	Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra	98.13
d2p41a1	257	An RNA cap (nucleoside-2'-O-)-methyltransferase do	98.12
d2bm8a1	232	Cephalosporin hydroxylase CmcI {Streptomyces clavu	98.07
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	97.86
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	97.8
d1i4wa_	322	Transcription factor sc-mtTFB {Baker's yeast (Sacc	97.75
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	97.74
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	97.73
d2oyra1	250	Hypothetical protein YhiQ {Shigella flexneri [TaxI	97.69
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	97.67
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	97.57
d1g60a_	256	Methyltransferase mboII {Moraxella bovis [TaxId: 4	97.51
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	97.43
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	97.43
d1booa_	320	m.PvuII N4 cytosine-specific DNA methyltransferase	97.41
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	97.35
d1eg2a_	279	m.RsrI N6 adenosine-specific DNA methyltransferase	97.33
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	97.26
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	97.18
d1dcta_	324	DNA methylase HaeIII {Haemophilus aegyptius [TaxId	97.11
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	97.06
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	97.05
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	97.0
d2c7pa1	327	DNA methylase HhaI {Haemophilus haemolyticus [TaxI	96.85
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	96.82
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	96.82
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	96.75
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	96.71
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	96.56
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	96.47
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	96.43
d1wmaa1	275	Carbonyl reductase/20beta-hydroxysteroid dehydroge	96.11
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	96.06
d1v3va2	182	Leukotriene b4 12-hydroxydehydrogenase/prostagland	95.79
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	95.66
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	95.61
d1xa0a2	176	B. subtilis YhfP homologue {Bacillus stearothermop	95.6
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	95.47
d2c07a1	251	beta-keto acyl carrier protein reductase {Malaria	95.36
d2ae2a_	259	Tropinone reductase {Jimsonweed (Datura stramonium	95.35
d1g55a_	343	DNMT2 {Human (Homo sapiens) [TaxId: 9606]}	95.31
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	95.31
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	95.21
d1xkqa_	272	Hypothetical protein R05D8.7 {Caenorhabditis elega	95.17
d1xq1a_	259	Tropinone reductase {Thale cress (Arabidopsis thal	95.08
d1xhla_	274	Hypothetical protein F25D1.5 {Caenorhabditis elega	94.92
d1vl8a_	251	Gluconate 5-dehydrogenase {Thermotoga maritima [Ta	94.8
d1ja9a_	259	1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl	94.72
d1iy8a_	258	Levodione reductase {Corynebacterium aquaticum [Ta	94.62
d1g0oa_	272	1,3,8-trihydroxynaphtalene reductase (THNR, naphto	94.59
d2py6a1	395	Methyltransferase FkbM {Methylobacillus flagellatu	94.31
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	94.15
d1zk4a1	251	R-specific alcohol dehydrogenase {Lactobacillus br	94.11
d2rhca1	257	beta-keto acyl carrier protein reductase {Streptom	94.05
d1spxa_	264	Glucose dehydrogenase (5l265) {Nematode (Caenorhab	94.03
d1tt7a2	167	Hypothetical protein YhfP {Bacillus subtilis [TaxI	93.79
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	93.78
d1gu7a2	189	2,4-dienoyl-CoA reductase {Yeast (Candida tropical	93.76
d2gdza1	254	15-hydroxyprostaglandin dehydrogenase, PGDH {Human	93.72
d2bgka1	268	Rhizome secoisolariciresinol dehydrogenase {Mayapp	93.71
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	93.64
d1q7ba_	243	beta-keto acyl carrier protein reductase {Escheric	93.53
d1xu9a_	269	11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom	93.51
d1hxha_	253	3beta/17beta hydroxysteroid dehydrogenase {Comamon	93.49
d1vj1a2	187	Putative zinc-binding alcohol dehydrogenase {Mouse	93.26
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	93.21
d1eg2a_	279	m.RsrI N6 adenosine-specific DNA methyltransferase	93.15
d1pr9a_	244	Carbonyl reductase {Human (Homo sapiens) [TaxId: 9	93.09
d1nffa_	244	Putative oxidoreductase Rv2002 {Mycobacterium tube	93.05
d1fmca_	255	7-alpha-hydroxysteroid dehydrogenase {Escherichia	93.03
d2bd0a1	240	Bacterial sepiapterin reductase {Chlorobium tepidu	93.0
d1x1ta1	260	D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas	92.78
d1gega_	255	meso-2,3-butanediol dehydrogenase {Klebsiella pneu	92.77
d1yxma1	297	Peroxisomal trans 2-enoyl CoA reductase {Human (Ho	92.71
d1booa_	320	m.PvuII N4 cytosine-specific DNA methyltransferase	92.44
d1h5qa_	260	Mannitol dehydrogenase {Mushroom (Agaricus bisporu	92.37
d1g60a_	256	Methyltransferase mboII {Moraxella bovis [TaxId: 4	91.97
d1cyda_	242	Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1	91.95
d2uyoa1	297	Putative methyltransferase ML2640 {Mycobacterium l	91.92
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	91.85
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	91.76
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	91.71
d1hdca_	254	3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre	91.48
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	91.31
d2ew8a1	247	(s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb	91.29
d1ulua_	256	Enoyl-ACP reductase {Thermus thermophilus [TaxId:	91.26
d2a4ka1	241	beta-keto acyl carrier protein reductase {Thermus	91.04
d1ulsa_	242	beta-keto acyl carrier protein reductase {Thermus	90.71
d1ydea1	250	Retinal dehydrogenase/reductase 3 {Human (Homo sap	90.42
d2d1ya1	248	Hypothetical protein TTHA0369 {Thermus thermophilu	90.05
d1yqga2	152	Pyrroline-5-carboxylate reductase ProC {Neisseria	89.84
d1k2wa_	256	Sorbitol dehydrogenase {Rhodobacter sphaeroides [T	89.82
d1oaaa_	259	Sepiapterin reductase {Mouse (Mus musculus) [TaxId	89.2
d1o89a2	177	Hypothetical protein YhdH {Escherichia coli [TaxId	88.86
d1geea_	261	Glucose dehydrogenase {Bacillus megaterium [TaxId:	88.85
d1qsga_	258	Enoyl-ACP reductase {Escherichia coli [TaxId: 562]	88.73
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	88.47
d1zkda1	365	Hypothetical protein RPA4359 {Rhodopseudomonas pal	88.39
d1bdba_	276	Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps	87.95
d1m6ex_	359	Salicylic acid carboxyl methyltransferase (SAMT) {	87.75
d1o5ia_	234	beta-keto acyl carrier protein reductase {Thermoto	87.66
d2oo3a1	271	Uncharacterized protein LPG1296 {Legionella pneumo	87.66
d1sbya1	254	Drosophila alcohol dehydrogenase {Fly (Drosophila	87.62
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	87.45
d1edoa_	244	beta-keto acyl carrier protein reductase {Oil seed	87.35
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	85.79
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	83.84
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	82.26
d2fr1a1	259	Erythromycin synthase, eryAI, 1st ketoreductase mo	81.93

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=3.1e-39  Score=267.97  Aligned_cols=199  Identities=26%  Similarity=0.472  Sum_probs=173.4

Q ss_pred             cchhhHHHhhhcCccEEEcCceEEecCCCCCCCCCceeEEeCcccccCCCCchhHHHHHHHHHhhccCCCeEEEEcCcch
Q 026513            3 EQCNWIKKTQQSFHPVEVTKGLWIVPEWGAPPDVQATNIILNPGLAFGSGEHATTKLCLLLLRRLIKGGELFLDYGTGSG   82 (237)
Q Consensus         3 ~~~~w~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~g~~~~~~~~~~~l~~~~~~~~~vLDlG~G~G   82 (237)
                      +++||.+.|+++|+|+.++ ++++.|+|+.. ......+.++|+|.||+|+|++|++|++++....++|++|||+|||+|
T Consensus        55 ~~~dW~~~w~~~~~p~~~~-~~~v~~~~~~~-~~~~~~i~i~pg~aFGTG~H~TT~l~l~~l~~~~~~g~~VLDiGcGsG  132 (254)
T d2nxca1          55 GDEDWLEAWRRDLKPALAP-PFVVLAPWHTW-EGAEIPLVIEPGMAFGTGHHETTRLALKALARHLRPGDKVLDLGTGSG  132 (254)
T ss_dssp             CHHHHHHHHHHHCCCEEET-TEEEECTTCCC-CSSSEEEECCCC-----CCSHHHHHHHHHHHHHCCTTCEEEEETCTTS
T ss_pred             CcchHHHHHHhhCCCEEEC-CEEEEeccccC-CCcceEEEEccccccCccccchhhHHHHHHHhhcCccCEEEEcccchh
Confidence            5789999999999999886 57889999875 455789999999999999999999999999998899999999999999


Q ss_pred             HHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccccccccccCCCCCCce
Q 026513           83 ILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDLSSHKIRGISQTEKY  162 (237)
Q Consensus        83 ~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f  162 (237)
                      .+++.+++.| .+|+|+|+|+.+++.|++|++.+++.     ..+.++|..+                     ..+.++|
T Consensus       133 ~l~i~aa~~g-~~V~gvDis~~av~~A~~na~~n~~~-----~~~~~~d~~~---------------------~~~~~~f  185 (254)
T d2nxca1         133 VLAIAAEKLG-GKALGVDIDPMVLPQAEANAKRNGVR-----PRFLEGSLEA---------------------ALPFGPF  185 (254)
T ss_dssp             HHHHHHHHTT-CEEEEEESCGGGHHHHHHHHHHTTCC-----CEEEESCHHH---------------------HGGGCCE
T ss_pred             HHHHHHHhcC-CEEEEEECChHHHHHHHHHHHHcCCc-----eeEEeccccc---------------------ccccccc
Confidence            9999998886 56999999999999999999999986     4466777642                     1225789


Q ss_pred             eEEEEeCChHHHHHHHHHHhHhcCCCeEEEEeccCCCCHHHHHHHHhhc-cccceeeecCCEEEEEEEE
Q 026513          163 DVVIANILLNPLLQLADHIVSYAKPGAVVGISGILSEQLPHIINRYSEF-LEDILVSEMDDWTCVSGKK  230 (237)
Q Consensus       163 D~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~~~~~~~~~~~~~~~~~-~~~~~~~~~~~w~~~~~~~  230 (237)
                      |+|++|...+.+.++++.+.+.|||||++++|+++.++.+++...+... |..++....++|.+++++|
T Consensus       186 D~V~ani~~~~l~~l~~~~~~~LkpGG~lilSgil~~~~~~v~~~~~~~Gf~~~~~~~~~~Wv~l~~~r  254 (254)
T d2nxca1         186 DLLVANLYAELHAALAPRYREALVPGGRALLTGILKDRAPLVREAMAGAGFRPLEEAAEGEWVLLAYGR  254 (254)
T ss_dssp             EEEEEECCHHHHHHHHHHHHHHEEEEEEEEEEEEEGGGHHHHHHHHHHTTCEEEEEEEETTEEEEEEEC
T ss_pred             chhhhccccccHHHHHHHHHHhcCCCcEEEEEecchhhHHHHHHHHHHCCCEEEEEEEECCEEEEEEeC
Confidence            9999999999999999999999999999999999999999999998876 8889999999999999886

>d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein MJ0882
domain: Hypothetical protein MJ0882
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.85  E-value=3e-20  Score=147.14  Aligned_cols=167  Identities=19%  Similarity=0.249  Sum_probs=123.6

Q ss_pred             ceeEEeCcccccCCCCchhHHHHHHHHHhhccCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcC
Q 026513           38 ATNIILNPGLAFGSGEHATTKLCLLLLRRLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNN  117 (237)
Q Consensus        38 ~~~~~~~~~~~f~~g~~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~  117 (237)
                      ...+...++++...+....++++++.+.  ..++.+|||+|||+|.+++.++.. ..+|+++|+|+.+++.|++++..++
T Consensus        22 ~~~~~t~~gvF~~~~~d~~t~lLi~~l~--~~~~~~VLDiGcG~G~~~~~la~~-~~~v~~iD~s~~~i~~a~~n~~~~~   98 (194)
T d1dusa_          22 KLKFKTDSGVFSYGKVDKGTKILVENVV--VDKDDDILDLGCGYGVIGIALADE-VKSTTMADINRRAIKLAKENIKLNN   98 (194)
T ss_dssp             EEEEEEETTSTTTTSCCHHHHHHHHHCC--CCTTCEEEEETCTTSHHHHHHGGG-SSEEEEEESCHHHHHHHHHHHHHTT
T ss_pred             eEEEEcCCCccCCCCcCHHHHHHHHhCC--cCCCCeEEEEeecCChhHHHHHhh-ccccceeeeccccchhHHHHHHHhC
Confidence            3456667776555555566666665543  467889999999999999999876 5689999999999999999999998


Q ss_pred             CCCCcceEEeccCccccccccccccccccccccccccCCCCCCceeEEEEeCChHH----HHHHHHHHhHhcCCCeEEEE
Q 026513          118 IGPKKMKLHLVPDRTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLNP----LLQLADHIVSYAKPGAVVGI  193 (237)
Q Consensus       118 ~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~~~----~~~~l~~~~~~L~~gG~lii  193 (237)
                      +.+.  ++.+..+|.++                     ...+++||+|++|+|++.    ...+++.+.++|+|||.+++
T Consensus        99 l~~~--~i~~~~~d~~~---------------------~~~~~~fD~Ii~~~p~~~~~~~~~~~l~~~~~~LkpgG~l~i  155 (194)
T d1dusa_          99 LDNY--DIRVVHSDLYE---------------------NVKDRKYNKIITNPPIRAGKEVLHRIIEEGKELLKDNGEIWV  155 (194)
T ss_dssp             CTTS--CEEEEECSTTT---------------------TCTTSCEEEEEECCCSTTCHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred             Cccc--eEEEEEcchhh---------------------hhccCCceEEEEcccEEecchhhhhHHHHHHHhcCcCcEEEE
Confidence            8754  36778888763                     223679999999999754    35678999999999999988


Q ss_pred             eccCCCCHHHHHHHHhhccccce-eeecCCEEEEEEEE
Q 026513          194 SGILSEQLPHIINRYSEFLEDIL-VSEMDDWTCVSGKK  230 (237)
Q Consensus       194 s~~~~~~~~~~~~~~~~~~~~~~-~~~~~~w~~~~~~~  230 (237)
                      ..........+...+...|..++ +...++|..+..+|
T Consensus       156 ~~~~~~~~~~~~~~l~~~f~~~~~~~~~~gf~vl~a~K  193 (194)
T d1dusa_         156 VIQTKQGAKSLAKYMKDVFGNVETVTIKGGYRVLKSKK  193 (194)
T ss_dssp             EEESTHHHHHHHHHHHHHHSCCEEEEEETTEEEEEEEC
T ss_pred             EEeCcCCHHHHHHHHHHhCCcEEEEEecCCcEEEEEEE
Confidence            65444434455555555444433 45677888877765

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

Probab=99.81  E-value=2.3e-19  Score=145.65  Aligned_cols=107  Identities=11%  Similarity=0.159  Sum_probs=92.1

Q ss_pred             ccCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccc
Q 026513           68 IKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVED  147 (237)
Q Consensus        68 ~~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  147 (237)
                      +++|.+|||+|||+|.++..+++.+ .+|+|+|+|+.+++.|++++..+++.+    +.++++|+.+             
T Consensus        14 ~~~~~rILDiGcGtG~~~~~la~~~-~~v~gvD~S~~~l~~A~~~~~~~~~~~----~~~~~~d~~~-------------   75 (234)
T d1xxla_          14 CRAEHRVLDIGAGAGHTALAFSPYV-QECIGVDATKEMVEVASSFAQEKGVEN----VRFQQGTAES-------------   75 (234)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHGGGS-SEEEEEESCHHHHHHHHHHHHHHTCCS----EEEEECBTTB-------------
T ss_pred             CCCCCEEEEeCCcCcHHHHHHHHhC-CeEEEEeCChhhhhhhhhhhccccccc----cccccccccc-------------
Confidence            6899999999999999999999885 679999999999999999999988875    8889998763             


Q ss_pred             cccccccCCCCCCceeEEEEeCChHHH---HHHHHHHhHhcCCCeEEEEeccCCC
Q 026513          148 LSSHKIRGISQTEKYDVVIANILLNPL---LQLADHIVSYAKPGAVVGISGILSE  199 (237)
Q Consensus       148 ~~~~~~~~~~~~~~fD~I~~n~~~~~~---~~~l~~~~~~L~~gG~liis~~~~~  199 (237)
                             ...++++||+|+|..+++++   ..+++++.++|+|||+++++.+...
T Consensus        76 -------~~~~~~~fD~v~~~~~l~~~~d~~~~l~~~~r~LkpgG~~~~~~~~~~  123 (234)
T d1xxla_          76 -------LPFPDDSFDIITCRYAAHHFSDVRKAVREVARVLKQDGRFLLVDHYAP  123 (234)
T ss_dssp             -------CCSCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEECBC
T ss_pred             -------ccccccccceeeeeceeecccCHHHHHHHHHHeeCCCcEEEEEEcCCC
Confidence                   12346899999999988764   5789999999999999999765433

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.79  E-value=2.9e-19  Score=140.51  Aligned_cols=120  Identities=18%  Similarity=0.239  Sum_probs=102.8

Q ss_pred             ccCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccc
Q 026513           68 IKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVED  147 (237)
Q Consensus        68 ~~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  147 (237)
                      +.+|.+|||+|||+|.+++.+++. ..+|+|+|+++.+++.|++|++.+++..   +++++++|..+.            
T Consensus        31 ~~~g~~VLDiGcGsG~~s~~lA~~-~~~V~avD~~~~~l~~a~~n~~~~gl~~---~v~~~~gda~~~------------   94 (186)
T d1l3ia_          31 PGKNDVAVDVGCGTGGVTLELAGR-VRRVYAIDRNPEAISTTEMNLQRHGLGD---NVTLMEGDAPEA------------   94 (186)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHTT-SSEEEEEESCHHHHHHHHHHHHHTTCCT---TEEEEESCHHHH------------
T ss_pred             CCCCCEEEEEECCeEccccccccc-ceEEEEecCCHHHHHHHHHHHHHcCCCc---ceEEEECchhhc------------
Confidence            578999999999999999999876 5689999999999999999999999864   488999997642            


Q ss_pred             cccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEeccCCCCHHHHHHHHhhc
Q 026513          148 LSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILSEQLPHIINRYSEF  211 (237)
Q Consensus       148 ~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~~~~~~~~~~~~~~~~~  211 (237)
                              ......||+|+++.+.+...++++.+.+.|+|||++++.+...+....+...+...
T Consensus        95 --------~~~~~~~D~v~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~~e~~~~~~~~l~~~  150 (186)
T d1l3ia_          95 --------LCKIPDIDIAVVGGSGGELQEILRIIKDKLKPGGRIIVTAILLETKFEAMECLRDL  150 (186)
T ss_dssp             --------HTTSCCEEEEEESCCTTCHHHHHHHHHHTEEEEEEEEEEECBHHHHHHHHHHHHHT
T ss_pred             --------ccccCCcCEEEEeCccccchHHHHHHHHHhCcCCEEEEEeeccccHHHHHHHHHHc
Confidence                    22257899999999988888999999999999999999887666667777776654

>d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Escherichia coli [TaxId: 562]

Probab=99.79  E-value=3e-18  Score=142.16  Aligned_cols=151  Identities=17%  Similarity=0.218  Sum_probs=115.7

Q ss_pred             ceeEEeCcccccCCCCchhHHHHHHHH-HhhccCCCeEEEEcCcchHHHHHHHH-hCCCeEEEEeCCHHHHHHHHHHHHH
Q 026513           38 ATNIILNPGLAFGSGEHATTKLCLLLL-RRLIKGGELFLDYGTGSGILGIAAIK-FGAAMSVGADIDPQAIKSAHQNAAL  115 (237)
Q Consensus        38 ~~~~~~~~~~~f~~g~~~~~~~~~~~l-~~~~~~~~~vLDlG~G~G~~~~~la~-~~~~~v~~vD~s~~~i~~a~~~~~~  115 (237)
                      ..++.++|+...-   ++.|..+.+.. ......+.+|||+|||+|.+++.++. .+..+|+++|+|+.+++.|++|+..
T Consensus        78 ~~~~~v~~~VlIP---RpeTE~lv~~~l~~~~~~~~~vlDlGtGSG~I~i~la~~~p~~~v~avDis~~Al~~A~~Na~~  154 (274)
T d2b3ta1          78 SLPLFVSPATLIP---RPDTECLVEQALARLPEQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQH  154 (274)
T ss_dssp             TEEEECCTTSCCC---CTTHHHHHHHHHHHSCSSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHH
T ss_pred             eeEEEEecccccc---ccchhhhhhhHhhhhcccccceeeeehhhhHHHHHHHhhCCcceeeeccchhHHHhHHHHHHHH
Confidence            4567777775433   56666555544 44445667899999999999999886 5788999999999999999999999


Q ss_pred             cCCCCCcceEEeccCccccccccccccccccccccccccCCCCCCceeEEEEeCCh------------------------
Q 026513          116 NNIGPKKMKLHLVPDRTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILL------------------------  171 (237)
Q Consensus       116 ~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~------------------------  171 (237)
                      +++++    +.++++|++++                     .++.+||+|+||||+                        
T Consensus       155 ~~~~~----v~~~~~d~~~~---------------------~~~~~fDlIvsNPPYi~~~~~~~~~~v~~~eP~~AL~~g  209 (274)
T d2b3ta1         155 LAIKN----IHILQSDWFSA---------------------LAGQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAA  209 (274)
T ss_dssp             HTCCS----EEEECCSTTGG---------------------GTTCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCH
T ss_pred             hCccc----ceeeecccccc---------------------cCCCceeEEEecchhhhhhhhcccccccccchhhhcccc
Confidence            99875    89999998742                     225699999999993                        


Q ss_pred             ----HHHHHHHHHHhHhcCCCeEEEEeccCCCCHHHHHHHHhhc-ccccee
Q 026513          172 ----NPLLQLADHIVSYAKPGAVVGISGILSEQLPHIINRYSEF-LEDILV  217 (237)
Q Consensus       172 ----~~~~~~l~~~~~~L~~gG~liis~~~~~~~~~~~~~~~~~-~~~~~~  217 (237)
                          ..+.+++..+.++|+|||.+++- +-..+...+.+.+... |..+++
T Consensus       210 ~dGl~~~~~i~~~a~~~L~~~G~l~lE-ig~~q~~~v~~~l~~~gf~~i~~  259 (274)
T d2b3ta1         210 DSGMADIVHIIEQSRNALVSGGFLLLE-HGWQQGEAVRQAFILAGYHDVET  259 (274)
T ss_dssp             HHHTHHHHHHHHHHGGGEEEEEEEEEE-CCSSCHHHHHHHHHHTTCTTCCE
T ss_pred             cccchHHHHHHHHHHHhcCCCCEEEEE-ECchHHHHHHHHHHHCCCCeEEE
Confidence                23457889999999999999994 3345566777666654 665554

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

Probab=99.77  E-value=1.6e-18  Score=141.54  Aligned_cols=115  Identities=20%  Similarity=0.210  Sum_probs=95.2

Q ss_pred             HHHHHHHHhh--ccCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccc
Q 026513           58 KLCLLLLRRL--IKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTA  135 (237)
Q Consensus        58 ~~~~~~l~~~--~~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~  135 (237)
                      ...+..+...  +.||.+|||||||+|.++..+++....+|+|+|+|+.+++.|++++...++++   ++.++.+|+.+ 
T Consensus        19 ~~~~~~l~~~~~l~pg~~VLDiGCG~G~~~~~la~~~~~~v~GvD~s~~~~~~ar~~~~~~gl~~---~v~~~~~d~~~-   94 (245)
T d1nkva_          19 EEKYATLGRVLRMKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSE---RVHFIHNDAAG-   94 (245)
T ss_dssp             HHHHHHHHHHTCCCTTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTTCTT---TEEEEESCCTT-
T ss_pred             HHHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHhcCCEEEEEecccchhhHHHHHHHHhhccc---cchhhhhHHhh-
Confidence            3344444433  67899999999999999999887644689999999999999999999999876   58888999863 


Q ss_pred             cccccccccccccccccccCCCCCCceeEEEEeCChHHH---HHHHHHHhHhcCCCeEEEEecc
Q 026513          136 SMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLNPL---LQLADHIVSYAKPGAVVGISGI  196 (237)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~~~~---~~~l~~~~~~L~~gG~liis~~  196 (237)
                                          +.++++||+|+|...++++   ..+++++.+.|||||+++++..
T Consensus        95 --------------------~~~~~~fD~v~~~~~~~~~~d~~~~l~~~~r~LkPGG~l~i~~~  138 (245)
T d1nkva_          95 --------------------YVANEKCDVAACVGATWIAGGFAGAEELLAQSLKPGGIMLIGEP  138 (245)
T ss_dssp             --------------------CCCSSCEEEEEEESCGGGTSSSHHHHHHHTTSEEEEEEEEEEEE
T ss_pred             --------------------ccccCceeEEEEEehhhccCCHHHHHHHHHHHcCcCcEEEEEec
Confidence                                2346799999999888766   5789999999999999999643

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

Probab=99.77  E-value=3.3e-18  Score=137.96  Aligned_cols=104  Identities=20%  Similarity=0.208  Sum_probs=89.4

Q ss_pred             ccCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccc
Q 026513           68 IKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVED  147 (237)
Q Consensus        68 ~~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  147 (237)
                      ++++.+|||||||+|.++..+++.+ .+|+|+|+|+.+++.|++++...+..+    +.++++|..+.            
T Consensus        13 l~~~~rVLDiGcG~G~~~~~l~~~~-~~v~gvD~s~~~i~~A~~~~~~~~~~~----i~~~~~d~~~l------------   75 (231)
T d1vl5a_          13 LKGNEEVLDVATGGGHVANAFAPFV-KKVVAFDLTEDILKVARAFIEGNGHQQ----VEYVQGDAEQM------------   75 (231)
T ss_dssp             CCSCCEEEEETCTTCHHHHHHGGGS-SEEEEEESCHHHHHHHHHHHHHTTCCS----EEEEECCC-CC------------
T ss_pred             CCCcCEEEEecccCcHHHHHHHHhC-CEEEEEECCHHHHhhhhhccccccccc----ccccccccccc------------
Confidence            6788999999999999999999885 579999999999999999999888775    88999997631            


Q ss_pred             cccccccCCCCCCceeEEEEeCChHHH---HHHHHHHhHhcCCCeEEEEecc
Q 026513          148 LSSHKIRGISQTEKYDVVIANILLNPL---LQLADHIVSYAKPGAVVGISGI  196 (237)
Q Consensus       148 ~~~~~~~~~~~~~~fD~I~~n~~~~~~---~~~l~~~~~~L~~gG~liis~~  196 (237)
                              ..++++||+|+|...++++   ..+++++.++|+|||++++..+
T Consensus        76 --------~~~~~~fD~v~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~~~  119 (231)
T d1vl5a_          76 --------PFTDERFHIVTCRIAAHHFPNPASFVSEAYRVLKKGGQLLLVDN  119 (231)
T ss_dssp             --------CSCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             --------cccccccccccccccccccCCHHHHHHHHHHhcCCCcEEEEEeC
Confidence                    2246899999999988765   4679999999999999999754

>d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein SMu776, middle and C-terminal domains
species: Streptococcus mutans [TaxId: 1309]

Probab=99.75  E-value=1.3e-17  Score=141.30  Aligned_cols=156  Identities=12%  Similarity=0.051  Sum_probs=121.7

Q ss_pred             CceeEEeCcccccCCCCchhHHHHHHHHHhhccCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHc
Q 026513           37 QATNIILNPGLAFGSGEHATTKLCLLLLRRLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALN  116 (237)
Q Consensus        37 ~~~~~~~~~~~~f~~g~~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~  116 (237)
                      ....+.+++...+.+|.....+.....+...+.+|++|||++||+|.+++.++..|+.+|+++|+|+.+++.|++|+..|
T Consensus       111 ~Gl~f~vdl~~g~ktGlflDqR~~r~~l~~~~~~g~~VLdlf~~~G~~sl~aa~~ga~~V~~vD~s~~a~~~a~~N~~~n  190 (317)
T d2b78a2         111 NGISYNVFLNDGLMTGIFLDQRQVRNELINGSAAGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEAN  190 (317)
T ss_dssp             TTEEEEECSSSSSCCSSCGGGHHHHHHHHHTTTBTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHHHT
T ss_pred             CCEEEEEEcccccccCCcHHHHHHHHHHHHHhhCCCceeecCCCCcHHHHHHHhCCCceEEEecCCHHHHHHHHHHHHHh
Confidence            35678888888888888888777666655556789999999999999999988888999999999999999999999999


Q ss_pred             CCCCCcceEEeccCccccccccccccccccccccccccCCCCCCceeEEEEeCCh------------HHHHHHHHHHhHh
Q 026513          117 NIGPKKMKLHLVPDRTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILL------------NPLLQLADHIVSY  184 (237)
Q Consensus       117 ~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~------------~~~~~~l~~~~~~  184 (237)
                      ++...  ++.++++|+++..         +.+       .....+||+|++|||.            ..+.+++..+.++
T Consensus       191 ~l~~~--~~~~i~~d~~~~l---------~~~-------~~~~~~fD~Ii~DPP~f~~~~~~~~~~~~~~~~L~~~a~~l  252 (317)
T d2b78a2         191 HLDMA--NHQLVVMDVFDYF---------KYA-------RRHHLTYDIIIIDPPSFARNKKEVFSVSKDYHKLIRQGLEI  252 (317)
T ss_dssp             TCCCT--TEEEEESCHHHHH---------HHH-------HHTTCCEEEEEECCCCC-----CCCCHHHHHHHHHHHHHHT
T ss_pred             cccCc--ceEEEEccHHHHH---------HHH-------HhhcCCCCEEEEcChhhccchhHHHHHHHHHHHHHHHHHHH
Confidence            98643  3788999987421         110       1124689999999993            3356788999999


Q ss_pred             cCCCeEEEEecc-CCCCHHHHHHHHhh
Q 026513          185 AKPGAVVGISGI-LSEQLPHIINRYSE  210 (237)
Q Consensus       185 L~~gG~liis~~-~~~~~~~~~~~~~~  210 (237)
                      |+|||.|++++. ..-+..++...+..
T Consensus       253 l~pgG~l~~~scs~~~~~~~f~~~v~~  279 (317)
T d2b78a2         253 LSENGLIIASTNAANMTVSQFKKQIEK  279 (317)
T ss_dssp             EEEEEEEEEEECCTTSCHHHHHHHHHH
T ss_pred             cCCCCEEEEEeCCccCCHHHHHHHHHH
Confidence            999999999744 44455666555543

>d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein PH1915, middle and C-terminal domains
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.75  E-value=4.9e-18  Score=144.49  Aligned_cols=143  Identities=22%  Similarity=0.269  Sum_probs=114.1

Q ss_pred             ccCCCCchhHHHHHHHHHhhccCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEe
Q 026513           48 AFGSGEHATTKLCLLLLRRLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHL  127 (237)
Q Consensus        48 ~f~~g~~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~  127 (237)
                      .+.+|....++....++....++|.+|||+|||+|.+++.++..|+.+|+++|+|+.+++.|++|+..|++.+   ++++
T Consensus       123 ~~~tG~flDqr~~r~~~~~~~~~g~~VLDl~~g~G~~si~~a~~ga~~V~~vD~s~~al~~a~~N~~~ngl~~---~~~~  199 (324)
T d2as0a2         123 GQKTGFFLDQRENRLALEKWVQPGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGVED---RMKF  199 (324)
T ss_dssp             SSSSCCCSTTHHHHHHHGGGCCTTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCGG---GEEE
T ss_pred             ccccCcccchhhHHHHHHhhcCCCCeeecccCcccchhhhhhhcCCcEEEeecCCHHHHHHHHHHHHHcCCCc---ccee
Confidence            4567788888888888888888999999999999999999999888899999999999999999999999865   4788


Q ss_pred             ccCccccccccccccccccccccccccCCCCCCceeEEEEeCCh------------HHHHHHHHHHhHhcCCCeEEEEe-
Q 026513          128 VPDRTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILL------------NPLLQLADHIVSYAKPGAVVGIS-  194 (237)
Q Consensus       128 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~------------~~~~~~l~~~~~~L~~gG~liis-  194 (237)
                      +++|+++..         ..       ....+.+||+|++|||.            ..+.+++..+.++|+|||.|+++ 
T Consensus       200 ~~~d~~~~~---------~~-------~~~~~~~fD~Vi~DpP~~~~~~~~~~~~~~~y~~l~~~a~~ll~pGG~lv~~s  263 (324)
T d2as0a2         200 IVGSAFEEM---------EK-------LQKKGEKFDIVVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCS  263 (324)
T ss_dssp             EESCHHHHH---------HH-------HHHTTCCEEEEEECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred             eechhhhhh---------HH-------HHhccCCCCchhcCCccccCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEe
Confidence            899987321         00       01125689999999993            34567889999999999999886 


Q ss_pred             ccCCCCHHHHHHHHh
Q 026513          195 GILSEQLPHIINRYS  209 (237)
Q Consensus       195 ~~~~~~~~~~~~~~~  209 (237)
                      |-..-+..++.+.+.
T Consensus       264 ~s~~~~~~~f~~~v~  278 (324)
T d2as0a2         264 CSQHVDLQMFKDMII  278 (324)
T ss_dssp             CCTTSCHHHHHHHHH
T ss_pred             CCccCCHHHHHHHHH
Confidence            444444555555543

>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical protein PH0226
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.74  E-value=1.5e-17  Score=133.09  Aligned_cols=110  Identities=19%  Similarity=0.174  Sum_probs=88.6

Q ss_pred             HHHHHHhhccCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccc
Q 026513           60 CLLLLRRLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNE  139 (237)
Q Consensus        60 ~~~~l~~~~~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~  139 (237)
                      +...+++.++++.+|||+|||+|.++..+++.+ .+|+|+|+|+.+++.|++++...+..     +.++.+|..+     
T Consensus        27 ~~~~~~~~l~~~~~ILDiGcG~G~~~~~la~~~-~~v~giD~S~~~i~~ak~~~~~~~~~-----~~~~~~d~~~-----   95 (226)
T d1ve3a1          27 LEPLLMKYMKKRGKVLDLACGVGGFSFLLEDYG-FEVVGVDISEDMIRKAREYAKSRESN-----VEFIVGDARK-----   95 (226)
T ss_dssp             HHHHHHHSCCSCCEEEEETCTTSHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHTTCC-----CEEEECCTTS-----
T ss_pred             HHHHHHHhcCCCCEEEEECCCcchhhhhHhhhh-cccccccccccchhhhhhhhcccccc-----cccccccccc-----
Confidence            344455556788899999999999999999885 56999999999999999998877643     5566777653     


Q ss_pred             cccccccccccccccCCCCCCceeEEEEeCChHHH-----HHHHHHHhHhcCCCeEEEEec
Q 026513          140 RVDGVVEDLSSHKIRGISQTEKYDVVIANILLNPL-----LQLADHIVSYAKPGAVVGISG  195 (237)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~~~~-----~~~l~~~~~~L~~gG~liis~  195 (237)
                                     ...++.+||+|+|..+++++     .++++++.++|+|||.+++..
T Consensus        96 ---------------l~~~~~~fD~I~~~~~l~~~~~~d~~~~l~~i~~~LkpgG~lii~~  141 (226)
T d1ve3a1          96 ---------------LSFEDKTFDYVIFIDSIVHFEPLELNQVFKEVRRVLKPSGKFIMYF  141 (226)
T ss_dssp             ---------------CCSCTTCEEEEEEESCGGGCCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ---------------ccccCcCceEEEEecchhhCChhHHHHHHHHHHHHcCcCcEEEEEE
Confidence                           12336799999999987653     457999999999999999864

>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

Probab=99.73  E-value=2.5e-17  Score=132.75  Aligned_cols=118  Identities=17%  Similarity=0.201  Sum_probs=94.3

Q ss_pred             HHHHHHHHHhhccCCCeEEEEcCcchHHHHHHHHh---CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccc
Q 026513           57 TKLCLLLLRRLIKGGELFLDYGTGSGILGIAAIKF---GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTF  133 (237)
Q Consensus        57 ~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~la~~---~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~  133 (237)
                      .+.+...+....+++.+|||+|||+|..+..+++.   +..+|+|+|+|+.|++.|++++...+...   .+++..+|..
T Consensus        26 ~~~i~~~~~~~~~~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~~~~---~~~~~~~d~~  102 (225)
T d1im8a_          26 ITAIGMLAERFVTADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEI---PVEILCNDIR  102 (225)
T ss_dssp             HHHHHHHHHHHCCTTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSCCSS---CEEEECSCTT
T ss_pred             HHHHHHHHHHhcCCCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhcccc---hhhhccchhh
Confidence            34455555666789999999999999999999864   56789999999999999999988766543   4777788765


Q ss_pred             cccccccccccccccccccccCCCCCCceeEEEEeCChHHH-----HHHHHHHhHhcCCCeEEEEeccCCC
Q 026513          134 TASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLNPL-----LQLADHIVSYAKPGAVVGISGILSE  199 (237)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~~~~-----~~~l~~~~~~L~~gG~liis~~~~~  199 (237)
                      +                     . +..++|+|+++..++++     .++++++.+.|+|||.+++++....
T Consensus       103 ~---------------------~-~~~~~d~i~~~~~l~~~~~~d~~~~l~~i~~~LkpgG~li~~~~~~~  151 (225)
T d1im8a_         103 H---------------------V-EIKNASMVILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFRF  151 (225)
T ss_dssp             T---------------------C-CCCSEEEEEEESCGGGSCGGGHHHHHHHHHHHEEEEEEEEEEEECCC
T ss_pred             c---------------------c-ccccceeeEEeeeccccChhhHHHHHHHHHHhCCCCceeeccccccc
Confidence            2                     1 24689999998877554     4789999999999999999866433

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

Probab=99.73  E-value=1.4e-17  Score=136.63  Aligned_cols=120  Identities=20%  Similarity=0.233  Sum_probs=95.4

Q ss_pred             HhhccCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccc
Q 026513           65 RRLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGV  144 (237)
Q Consensus        65 ~~~~~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~  144 (237)
                      +...+++.+|||+|||+|..+..+++.+..+|+|+|+|+.+++.|++++...+...   .+.+.++|....         
T Consensus        19 ~~~~~~~~~VLDlGCG~G~~~~~~~~~~~~~v~GiD~S~~~l~~A~~r~~~~~~~~---~v~f~~~D~~~~---------   86 (252)
T d1ri5a_          19 RLYTKRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRF---KVFFRAQDSYGR---------   86 (252)
T ss_dssp             HHHCCTTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSCCSS---EEEEEESCTTTS---------
T ss_pred             HHhCCCcCEEEEecccCcHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHhcCCCc---ceEEEEcchhhh---------
Confidence            44567899999999999999999998888899999999999999999988776554   588999997531         


Q ss_pred             ccccccccccCCCCCCceeEEEEeCChHHH-------HHHHHHHhHhcCCCeEEEEeccCCCCHHHHHHHHh
Q 026513          145 VEDLSSHKIRGISQTEKYDVVIANILLNPL-------LQLADHIVSYAKPGAVVGISGILSEQLPHIINRYS  209 (237)
Q Consensus       145 ~~~~~~~~~~~~~~~~~fD~I~~n~~~~~~-------~~~l~~~~~~L~~gG~liis~~~~~~~~~~~~~~~  209 (237)
                                .....++||+|+|...++++       ..++.++.++|+|||+++++..   +...+...+.
T Consensus        87 ----------~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~Lk~gG~~i~~~~---~~~~i~~~~~  145 (252)
T d1ri5a_          87 ----------HMDLGKEFDVISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVP---SRDVILERYK  145 (252)
T ss_dssp             ----------CCCCSSCEEEEEEESCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE---CHHHHHHHHH
T ss_pred             ----------cccccccceEEEEcceeeecCCCHHHHHHHHHHHhceeCCCCEEEEEec---CHHHHHHHHH
Confidence                      12235789999999987654       4679999999999999998642   2344444443

>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Putative sarcosine dimethylglycine methyltransferase
species: Red algae (Galdieria sulphuraria) [TaxId: 130081]

Probab=99.72  E-value=1.8e-17  Score=138.11  Aligned_cols=106  Identities=14%  Similarity=0.128  Sum_probs=90.6

Q ss_pred             ccCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccc
Q 026513           68 IKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVED  147 (237)
Q Consensus        68 ~~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  147 (237)
                      ++++.+|||+|||+|.++..+++....+|+|+|+|+.+++.|++++...++.+   ++.++++|+.+.            
T Consensus        65 l~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~i~~a~~~~~~~gl~~---~v~~~~~d~~~l------------  129 (282)
T d2o57a1          65 LQRQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAGLAD---NITVKYGSFLEI------------  129 (282)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHHTCTT---TEEEEECCTTSC------------
T ss_pred             CCCCCEEEEeCCCCcHHHhhhhccCCcEEEEEeccchhhhhhhcccccccccc---cccccccccccc------------
Confidence            56899999999999999999987645679999999999999999999998875   488999998632            


Q ss_pred             cccccccCCCCCCceeEEEEeCChHHH---HHHHHHHhHhcCCCeEEEEecc
Q 026513          148 LSSHKIRGISQTEKYDVVIANILLNPL---LQLADHIVSYAKPGAVVGISGI  196 (237)
Q Consensus       148 ~~~~~~~~~~~~~~fD~I~~n~~~~~~---~~~l~~~~~~L~~gG~liis~~  196 (237)
                              ..++++||+|++..+++++   ..+++++.++|+|||.+++.++
T Consensus       130 --------~~~~~sfD~V~~~~~l~h~~d~~~~l~~~~~~LkpgG~l~~~~~  173 (282)
T d2o57a1         130 --------PCEDNSYDFIWSQDAFLHSPDKLKVFQECARVLKPRGVMAITDP  173 (282)
T ss_dssp             --------SSCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             --------cccccccchhhccchhhhccCHHHHHHHHHHhcCCCcEEEEEEe
Confidence                    2246799999999887664   4789999999999999999754

>d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein TTHA1280, middle and C-terminal domains
species: Thermus thermophilus [TaxId: 274]

Probab=99.72  E-value=3.9e-17  Score=138.49  Aligned_cols=149  Identities=16%  Similarity=0.191  Sum_probs=112.4

Q ss_pred             ceeEEeCcccccCCCCchhHHHHHHHHHhhccCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcC
Q 026513           38 ATNIILNPGLAFGSGEHATTKLCLLLLRRLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNN  117 (237)
Q Consensus        38 ~~~~~~~~~~~f~~g~~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~  117 (237)
                      ...+.+++...+.+|.....+....++ .. .+|++|||+|||+|.+++.++. ++.+|+++|+|+.+++.|++|+..++
T Consensus       115 G~~f~v~l~~~~~tG~flDqr~~r~~~-~~-~~g~rVLDl~~gtG~~s~~~a~-g~~~V~~vD~s~~al~~a~~n~~~ng  191 (318)
T d1wxxa2         115 RVRYLVDLRAGQKTGAYLDQRENRLYM-ER-FRGERALDVFSYAGGFALHLAL-GFREVVAVDSSAEALRRAEENARLNG  191 (318)
T ss_dssp             TEEEEEECSTTSCCCCCGGGHHHHHHG-GG-CCEEEEEEETCTTTHHHHHHHH-HEEEEEEEESCHHHHHHHHHHHHHTT
T ss_pred             CEEEEEechhccccccchhhhhhHHHH-HH-hCCCeeeccCCCCcHHHHHHHh-cCCcEEeecchHHHHHHHHHHHHHcC
Confidence            456677777777778877776654443 32 4689999999999999998875 56789999999999999999999999


Q ss_pred             CCCCcceEEeccCccccccccccccccccccccccccCCCCCCceeEEEEeCCh------------HHHHHHHHHHhHhc
Q 026513          118 IGPKKMKLHLVPDRTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILL------------NPLLQLADHIVSYA  185 (237)
Q Consensus       118 ~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~------------~~~~~~l~~~~~~L  185 (237)
                      +.+    +.++++|.++..         +.       .....++||+|++|||.            ..+.+++..+.++|
T Consensus       192 l~~----~~~i~~d~~~~~---------~~-------~~~~~~~fD~Vi~DpP~~~~~~~~~~~~~~~~~~l~~~a~~lL  251 (318)
T d1wxxa2         192 LGN----VRVLEANAFDLL---------RR-------LEKEGERFDLVVLDPPAFAKGKKDVERAYRAYKEVNLRAIKLL  251 (318)
T ss_dssp             CTT----EEEEESCHHHHH---------HH-------HHHTTCCEEEEEECCCCSCCSTTSHHHHHHHHHHHHHHHHHTE
T ss_pred             CCC----cceeeccHHHHh---------hh-------hHhhhcCCCEEEEcCCccccchHHHHHHHHHHHHHHHHHHHHc
Confidence            976    888999986321         00       01125789999999983            33457889999999


Q ss_pred             CCCeEEEEe-ccCCCCHHHHHHHHh
Q 026513          186 KPGAVVGIS-GILSEQLPHIINRYS  209 (237)
Q Consensus       186 ~~gG~liis-~~~~~~~~~~~~~~~  209 (237)
                      +|||.|+++ |...-+..++...+.
T Consensus       252 kpGG~Lv~~scs~~~~~~~f~~~v~  276 (318)
T d1wxxa2         252 KEGGILATASCSHHMTEPLFYAMVA  276 (318)
T ss_dssp             EEEEEEEEEECCTTSCHHHHHHHHH
T ss_pred             CCCCEEEEEeCCcccCHHHHHHHHH
Confidence            999999986 444445555555543

>d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Adrenal gland protein AD-003 (C9orf32)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=2.9e-17  Score=132.12  Aligned_cols=127  Identities=13%  Similarity=0.089  Sum_probs=98.5

Q ss_pred             cCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccccc
Q 026513           69 KGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDL  148 (237)
Q Consensus        69 ~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~  148 (237)
                      .++.+|||+|||+|.++..++..+..+|+|+|+|+.+++.|++++...+..+    +.++++|+.+.             
T Consensus        59 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~ak~~~~~~~~~~----~~f~~~d~~~~-------------  121 (222)
T d2ex4a1          59 TGTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGKRV----RNYFCCGLQDF-------------  121 (222)
T ss_dssp             CCCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHHHTGGGGGGE----EEEEECCGGGC-------------
T ss_pred             CCCCEEEEeccCCCHhhHHHHHhcCCEEEEeecCHHHhhccccccccccccc----ccccccccccc-------------
Confidence            4567999999999999998876667789999999999999999988776553    78889998742             


Q ss_pred             ccccccCCCCCCceeEEEEeCChHHH-----HHHHHHHhHhcCCCeEEEEeccCCC--------------CHHHHHHHHh
Q 026513          149 SSHKIRGISQTEKYDVVIANILLNPL-----LQLADHIVSYAKPGAVVGISGILSE--------------QLPHIINRYS  209 (237)
Q Consensus       149 ~~~~~~~~~~~~~fD~I~~n~~~~~~-----~~~l~~~~~~L~~gG~liis~~~~~--------------~~~~~~~~~~  209 (237)
                             ..+.++||+|++..+++++     .++++++.+.|+|||.++++.....              ...++...+.
T Consensus       122 -------~~~~~~fD~I~~~~~l~h~~~~~~~~~l~~i~~~Lk~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  194 (222)
T d2ex4a1         122 -------TPEPDSYDVIWIQWVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEGVILDDVDSSVCRDLDVVRRIIC  194 (222)
T ss_dssp             -------CCCSSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEBSSSEEEETTTTEEEEBHHHHHHHHH
T ss_pred             -------ccccccccccccccccccchhhhhhhHHHHHHHhcCCcceEEEEEcccccccccccCCceeeCCHHHHHHHHH
Confidence                   1236799999999988765     3689999999999999999643221              3456666665


Q ss_pred             h-ccccceeee
Q 026513          210 E-FLEDILVSE  219 (237)
Q Consensus       210 ~-~~~~~~~~~  219 (237)
                      + +|+.++...
T Consensus       195 ~aGf~ii~~~~  205 (222)
T d2ex4a1         195 SAGLSLLAEER  205 (222)
T ss_dssp             HTTCCEEEEEE
T ss_pred             HcCCEEEEEEE
Confidence            4 366655443

>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Methoxy mycolic acid synthase 4, Mma4
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.71  E-value=4.7e-17  Score=135.61  Aligned_cols=104  Identities=13%  Similarity=0.099  Sum_probs=87.0

Q ss_pred             ccCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccc
Q 026513           68 IKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVED  147 (237)
Q Consensus        68 ~~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  147 (237)
                      +++|.+|||||||+|.++..+++....+|+|+|+|+.+++.|++.++..++..   .+.+...|..+             
T Consensus        50 l~~g~~VLDiGCG~G~~a~~~a~~~g~~v~gi~ls~~q~~~a~~~~~~~~l~~---~~~~~~~d~~~-------------  113 (280)
T d2fk8a1          50 LKPGMTLLDIGCGWGTTMRRAVERFDVNVIGLTLSKNQHARCEQVLASIDTNR---SRQVLLQGWED-------------  113 (280)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTSCCSS---CEEEEESCGGG-------------
T ss_pred             CCCCCEEEEecCCchHHHHHHHHhCceeEEEecchHHHHHHHHHHHHhhcccc---chhhhhhhhhh-------------
Confidence            67899999999999999999887634589999999999999999999988865   36666666541             


Q ss_pred             cccccccCCCCCCceeEEEEeCChHHH-----HHHHHHHhHhcCCCeEEEEeccC
Q 026513          148 LSSHKIRGISQTEKYDVVIANILLNPL-----LQLADHIVSYAKPGAVVGISGIL  197 (237)
Q Consensus       148 ~~~~~~~~~~~~~~fD~I~~n~~~~~~-----~~~l~~~~~~L~~gG~liis~~~  197 (237)
                              +  +++||.|++-.+++++     ..+++++.++|||||.+++..+.
T Consensus       114 --------~--~~~fD~i~si~~~eh~~~~~~~~~f~~i~~~LkpgG~~~i~~i~  158 (280)
T d2fk8a1         114 --------F--AEPVDRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQSSV  158 (280)
T ss_dssp             --------C--CCCCSEEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEEEE
T ss_pred             --------h--ccchhhhhHhhHHHHhhhhhHHHHHHHHHhccCCCceEEEEEee
Confidence                    2  5789999998887665     57899999999999999996543

>d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA2
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.70  E-value=7.9e-17  Score=134.82  Aligned_cols=104  Identities=11%  Similarity=0.024  Sum_probs=87.6

Q ss_pred             ccCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccc
Q 026513           68 IKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVED  147 (237)
Q Consensus        68 ~~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  147 (237)
                      +++|.+|||||||.|.+++.+++....+|+|+++|+..++.|++.+...++.+   ++.+...|..              
T Consensus        59 l~~G~~VLDiGCG~G~~~~~~a~~~g~~v~git~s~~q~~~a~~~~~~~~l~~---~v~~~~~d~~--------------  121 (291)
T d1kpia_          59 LEPGMTLLDIGCGWGSTMRHAVAEYDVNVIGLTLSENQYAHDKAMFDEVDSPR---RKEVRIQGWE--------------  121 (291)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHSCCSS---CEEEEECCGG--------------
T ss_pred             CCCCCEEEEecCcchHHHHHHHHhcCcceeeccchHHHHHHHHHHHHhhccch---hhhhhhhccc--------------
Confidence            67899999999999999999885434579999999999999999999988876   4666666643              


Q ss_pred             cccccccCCCCCCceeEEEEeCChHHH------------HHHHHHHhHhcCCCeEEEEeccC
Q 026513          148 LSSHKIRGISQTEKYDVVIANILLNPL------------LQLADHIVSYAKPGAVVGISGIL  197 (237)
Q Consensus       148 ~~~~~~~~~~~~~~fD~I~~n~~~~~~------------~~~l~~~~~~L~~gG~liis~~~  197 (237)
                               ..+++||.|++-.+++++            ..+++++.++|+|||.+++..+.
T Consensus       122 ---------~~~~~fD~i~sie~~eH~~~~~~~~~~~~~~~~f~~i~~~LkpgG~~~l~~i~  174 (291)
T d1kpia_         122 ---------EFDEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTIT  174 (291)
T ss_dssp             ---------GCCCCCSEEEEESCGGGTTCCSSCCSTTHHHHHHHHHHHTSCTTCEEEEEEEE
T ss_pred             ---------ccccccceEeechhHHhcchhhhhhHHHHHHHHHHHHHHhCCCCCceEEEEEe
Confidence                     125799999998888664            67899999999999999997664

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=99.70  E-value=6e-17  Score=132.01  Aligned_cols=110  Identities=14%  Similarity=0.101  Sum_probs=86.7

Q ss_pred             HHHHHHHHhhccCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccc
Q 026513           58 KLCLLLLRRLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASM  137 (237)
Q Consensus        58 ~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~  137 (237)
                      ..+.+.+.....++.+|||+|||+|.++..+++.+. +|+|+|+|+.|++.|++++...+..     +.++++|+.+   
T Consensus        25 ~~~~~~~~~~~~~~~~vLDiGCG~G~~~~~l~~~g~-~v~GvD~S~~ml~~A~~~~~~~~~~-----v~~~~~d~~~---   95 (246)
T d1y8ca_          25 DFIIEKCVENNLVFDDYLDLACGTGNLTENLCPKFK-NTWAVDLSQEMLSEAENKFRSQGLK-----PRLACQDISN---   95 (246)
T ss_dssp             HHHHHHHHTTTCCTTEEEEETCTTSTTHHHHGGGSS-EEEEECSCHHHHHHHHHHHHHTTCC-----CEEECCCGGG---
T ss_pred             HHHHHHHHHhCCCCCeEEEEeCcCCHHHHHHHHhCC-ccEeeccchhhhhhccccccccCcc-----ceeeccchhh---
Confidence            344455554445568999999999999999999864 7999999999999999998877653     7788999863   


Q ss_pred             cccccccccccccccccCCCCCCceeEEEEeC-ChH------HHHHHHHHHhHhcCCCeEEEEe
Q 026513          138 NERVDGVVEDLSSHKIRGISQTEKYDVVIANI-LLN------PLLQLADHIVSYAKPGAVVGIS  194 (237)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~-~~~------~~~~~l~~~~~~L~~gG~liis  194 (237)
                                        +...++||+|+|.. +++      ....+++++.++|+|||.+++.
T Consensus        96 ------------------~~~~~~fD~i~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~  141 (246)
T d1y8ca_          96 ------------------LNINRKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFD  141 (246)
T ss_dssp             ------------------CCCSCCEEEEEECTTGGGGCCSHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred             ------------------hcccccccccceeeeeeeccCCHHHHHHHHHHHHHhCCCCeEEEEE
Confidence                              22356899999842 222      3356899999999999999985

>d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Putative methyltransferase Atu0340
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.69  E-value=3.9e-16  Score=130.95  Aligned_cols=155  Identities=12%  Similarity=0.091  Sum_probs=116.7

Q ss_pred             CCceeEEeCcccccCCCCchhHHHHHHHHHhh---ccCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHH
Q 026513           36 VQATNIILNPGLAFGSGEHATTKLCLLLLRRL---IKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQN  112 (237)
Q Consensus        36 ~~~~~~~~~~~~~f~~g~~~~~~~~~~~l~~~---~~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~  112 (237)
                      ...+.+.+++.....+|.....+...+++...   ..++.+|||++||+|.+++.++..|+ +|++||.|+.+++.|++|
T Consensus        95 e~gl~f~v~~~~~~~tG~f~dqr~nr~~~~~~~~~~~~~~rVLdlf~~tG~~sl~aa~~GA-~V~~VD~s~~al~~a~~N  173 (309)
T d2igta1          95 LLGVEFLGRFTAFRHVGVFPEQIVHWEWLKNAVETADRPLKVLNLFGYTGVASLVAAAAGA-EVTHVDASKKAIGWAKEN  173 (309)
T ss_dssp             ETTEEEEEECCSSSCCSCCGGGHHHHHHHHHHHHHSSSCCEEEEETCTTCHHHHHHHHTTC-EEEEECSCHHHHHHHHHH
T ss_pred             EeEEEEEEeccCCCccccccchhHHHHHHHHHHhhccCCCeEEEecCCCcHHHHHHHhCCC-eEEEEeChHHHHHHHHHh
Confidence            34578888888888999998888888776654   34688999999999999999988876 799999999999999999


Q ss_pred             HHHcCCCCCcceEEeccCccccccccccccccccccccccccCCCCCCceeEEEEeCCh-------------HHHHHHHH
Q 026513          113 AALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILL-------------NPLLQLAD  179 (237)
Q Consensus       113 ~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~-------------~~~~~~l~  179 (237)
                      +..|++.+.  +++++++|+++..         +.       ......+||+||+|||.             .++..++.
T Consensus       174 ~~ln~~~~~--~~~~i~~D~~~~l---------~~-------~~~~~~~fD~IilDPP~f~~~~~~~~~~~~~~~~~l~~  235 (309)
T d2igta1         174 QVLAGLEQA--PIRWICEDAMKFI---------QR-------EERRGSTYDIILTDPPKFGRGTHGEVWQLFDHLPLMLD  235 (309)
T ss_dssp             HHHHTCTTS--CEEEECSCHHHHH---------HH-------HHHHTCCBSEEEECCCSEEECTTCCEEEHHHHHHHHHH
T ss_pred             hhhhcccCC--cEEEEeCCHHHhH---------HH-------HhhcCCCCCEEEECCCcccccccchhHHHHHHHHHHHH
Confidence            999998653  3789999987421         11       11125689999999992             34456778


Q ss_pred             HHhHhcCCCeEEEEe-cc-CCCCHHHHHHHHh
Q 026513          180 HIVSYAKPGAVVGIS-GI-LSEQLPHIINRYS  209 (237)
Q Consensus       180 ~~~~~L~~gG~liis-~~-~~~~~~~~~~~~~  209 (237)
                      .+..+|+|||.+++. +. ..-+...+...+.
T Consensus       236 ~~~~ll~~~g~~ll~t~~s~~~s~~~~~~~~~  267 (309)
T d2igta1         236 ICREILSPKALGLVLTAYSIRASFYSMHELMR  267 (309)
T ss_dssp             HHHHTBCTTCCEEEEEECCTTSCHHHHHHHHH
T ss_pred             HHHHhcCCCCCEEEEecCCCCCCHHHHHHHHH
Confidence            888999999975554 32 3334444444443

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.69  E-value=1.8e-16  Score=129.05  Aligned_cols=100  Identities=21%  Similarity=0.320  Sum_probs=82.5

Q ss_pred             ccCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccc
Q 026513           68 IKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVED  147 (237)
Q Consensus        68 ~~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  147 (237)
                      ..++.+|||+|||+|.++..+++.+. +|+|+|+|+.|++.|++++...++.     +.+.++|+.+             
T Consensus        39 ~~~~~~iLDiGcGtG~~~~~l~~~~~-~v~gvD~s~~mi~~a~~~~~~~~~~-----i~~~~~d~~~-------------   99 (251)
T d1wzna1          39 KREVRRVLDLACGTGIPTLELAERGY-EVVGLDLHEEMLRVARRKAKERNLK-----IEFLQGDVLE-------------   99 (251)
T ss_dssp             SSCCCEEEEETCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCC-----CEEEESCGGG-------------
T ss_pred             CCCCCEEEEeCCCCCccchhhcccce-EEEEEeecccccccccccccccccc-----chheehhhhh-------------
Confidence            34567899999999999999999865 7999999999999999999887763     7788998763             


Q ss_pred             cccccccCCCCCCceeEEEEeC-ChH-----HHHHHHHHHhHhcCCCeEEEEe
Q 026513          148 LSSHKIRGISQTEKYDVVIANI-LLN-----PLLQLADHIVSYAKPGAVVGIS  194 (237)
Q Consensus       148 ~~~~~~~~~~~~~~fD~I~~n~-~~~-----~~~~~l~~~~~~L~~gG~liis  194 (237)
                              +...++||+|+|.. .+.     ....+++++.++|+|||+++++
T Consensus       100 --------l~~~~~fD~I~~~~~~~~~~~~~~~~~~L~~~~~~LkpgG~lii~  144 (251)
T d1wzna1         100 --------IAFKNEFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITD  144 (251)
T ss_dssp             --------CCCCSCEEEEEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             --------cccccccchHhhhhhhhhcCChHHHHHHHHHHHHHcCCCcEEEEE
Confidence                    22346899999853 332     2457899999999999999986

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.69  E-value=1e-16  Score=126.72  Aligned_cols=102  Identities=19%  Similarity=0.232  Sum_probs=86.3

Q ss_pred             ccCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccc
Q 026513           68 IKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVED  147 (237)
Q Consensus        68 ~~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  147 (237)
                      +.+| +|||+|||+|..+..+++.| .+|+|+|+|+.+++.+++++...++.+    +.+...|+.              
T Consensus        29 ~~~g-rvLDiGcG~G~~~~~la~~g-~~v~gvD~s~~~l~~a~~~~~~~~~~~----~~~~~~d~~--------------   88 (198)
T d2i6ga1          29 VAPG-RTLDLGCGNGRNSLYLAANG-YDVTAWDKNPASMANLERIKAAEGLDN----LQTDLVDLN--------------   88 (198)
T ss_dssp             SCSC-EEEEETCTTSHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHTTCTT----EEEEECCTT--------------
T ss_pred             CCCC-cEEEECCCCCHHHHHHHHHh-hhhccccCcHHHHHHHHHHhhhccccc----hhhhheecc--------------
Confidence            3444 99999999999999999986 469999999999999999999888876    777778765              


Q ss_pred             cccccccCCCCCCceeEEEEeCChHHH-----HHHHHHHhHhcCCCeEEEEecc
Q 026513          148 LSSHKIRGISQTEKYDVVIANILLNPL-----LQLADHIVSYAKPGAVVGISGI  196 (237)
Q Consensus       148 ~~~~~~~~~~~~~~fD~I~~n~~~~~~-----~~~l~~~~~~L~~gG~liis~~  196 (237)
                             ....+++||+|+|+.+++++     .++++++.++|+|||++++..+
T Consensus        89 -------~~~~~~~fD~I~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~  135 (198)
T d2i6ga1          89 -------TLTFDGEYDFILSTVVMMFLEAQTIPGLIANMQRCTKPGGYNLIVAA  135 (198)
T ss_dssp             -------TCCCCCCEEEEEEESCGGGSCTTHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             -------cccccccccEEEEeeeeecCCHHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence                   23346799999999988764     4689999999999999999644

>d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: (Uracil-5-)-methyltransferase
domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain
species: Escherichia coli [TaxId: 562]

Probab=99.68  E-value=4.5e-16  Score=133.68  Aligned_cols=159  Identities=15%  Similarity=0.116  Sum_probs=124.2

Q ss_pred             CceeEEeCcccccCCCCchhHHHHHHHHHhh-ccCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHH
Q 026513           37 QATNIILNPGLAFGSGEHATTKLCLLLLRRL-IKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAAL  115 (237)
Q Consensus        37 ~~~~~~~~~~~~f~~g~~~~~~~~~~~l~~~-~~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~  115 (237)
                      ....+.+.|+.+|+.+......++...+... ..++.+|||++||+|.+++.+++. ..+|+|+|+++.+++.|++|+..
T Consensus       178 ~g~~~~i~p~sFfQ~N~~~~e~l~~~v~~~~~~~~~~~vlDLycG~G~fsl~La~~-~~~V~gvE~~~~ai~~A~~na~~  256 (358)
T d1uwva2         178 NGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQ-AASVVGVEGVPALVEKGQQNARL  256 (358)
T ss_dssp             TTEEEECCSSSCCCSBHHHHHHHHHHHHHHHTCCTTCEEEEESCTTTTTHHHHHTT-SSEEEEEESCHHHHHHHHHHHHH
T ss_pred             CCEEEEECCchhhccchhhhhHHHHHHHHhhccCCCceEEEecccccccchhcccc-ccEEEeccCcHHHHHHHHHhHHh
Confidence            3577899999999876655555544444332 346789999999999999999876 67899999999999999999999


Q ss_pred             cCCCCCcceEEeccCccccccccccccccccccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEec
Q 026513          116 NNIGPKKMKLHLVPDRTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISG  195 (237)
Q Consensus       116 ~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~  195 (237)
                      |++.+    +.++.++..+....                ......+||+|+.|||+....+.+..+.+. +|.-.+|+||
T Consensus       257 n~i~n----~~~~~~~~~~~~~~----------------~~~~~~~~d~vilDPPR~G~~~~~~~l~~~-~~~~ivYVSC  315 (358)
T d1uwva2         257 NGLQN----VTFYHENLEEDVTK----------------QPWAKNGFDKVLLDPARAGAAGVMQQIIKL-EPIRIVYVSC  315 (358)
T ss_dssp             TTCCS----EEEEECCTTSCCSS----------------SGGGTTCCSEEEECCCTTCCHHHHHHHHHH-CCSEEEEEES
T ss_pred             ccccc----ceeeecchhhhhhh----------------hhhhhccCceEEeCCCCccHHHHHHHHHHc-CCCEEEEEeC
Confidence            99997    88888887532100                112246799999999998887777777764 8899999999


Q ss_pred             cCCCCHHHHHHHHhhcccccee
Q 026513          196 ILSEQLPHIINRYSEFLEDILV  217 (237)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~  217 (237)
                      ...+..+++.......|...++
T Consensus       316 np~TlaRDl~~l~~~gy~l~~i  337 (358)
T d1uwva2         316 NPATLARDSEALLKAGYTIARL  337 (358)
T ss_dssp             CHHHHHHHHHHHHHTTCEEEEE
T ss_pred             CHHHHHHHHHHHHHCCCeEeEE
Confidence            9988889988877766544443

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=99.67  E-value=1.3e-16  Score=130.46  Aligned_cols=124  Identities=20%  Similarity=0.174  Sum_probs=97.9

Q ss_pred             ccCCCeEEEEcCcchHHHHHHHHh--CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccc
Q 026513           68 IKGGELFLDYGTGSGILGIAAIKF--GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVV  145 (237)
Q Consensus        68 ~~~~~~vLDlG~G~G~~~~~la~~--~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  145 (237)
                      ++||.+|||+|||+|.++..+++.  +..+|+++|+++.+++.|++|+...+...   .+.+..+|+.+           
T Consensus        83 i~pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~~~~---nv~~~~~Di~~-----------  148 (250)
T d1yb2a1          83 LRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIG---NVRTSRSDIAD-----------  148 (250)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCT---TEEEECSCTTT-----------
T ss_pred             CCCcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhcCCC---ceEEEEeeeec-----------
Confidence            578999999999999999999975  56789999999999999999998764432   38888998763           


Q ss_pred             cccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEeccCCCCHHHHHHHHhhc-ccccee
Q 026513          146 EDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILSEQLPHIINRYSEF-LEDILV  217 (237)
Q Consensus       146 ~~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~~~~~~~~~~~~~~~~~-~~~~~~  217 (237)
                                ..++..||.|+++.+-.  ..+++.+.+.|||||++++.....++...+...+++. |..+++
T Consensus       149 ----------~~~~~~fD~V~ld~p~p--~~~l~~~~~~LKpGG~lv~~~P~i~Qv~~~~~~l~~~gf~~i~~  209 (250)
T d1yb2a1         149 ----------FISDQMYDAVIADIPDP--WNHVQKIASMMKPGSVATFYLPNFDQSEKTVLSLSASGMHHLET  209 (250)
T ss_dssp             ----------CCCSCCEEEEEECCSCG--GGSHHHHHHTEEEEEEEEEEESSHHHHHHHHHHSGGGTEEEEEE
T ss_pred             ----------ccccceeeeeeecCCch--HHHHHHHHHhcCCCceEEEEeCCcChHHHHHHHHHHCCCceeEE
Confidence                      23367899999987644  3578999999999999998755555666777766654 554433

>d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA1
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.66  E-value=4.2e-16  Score=129.97  Aligned_cols=104  Identities=14%  Similarity=0.080  Sum_probs=88.5

Q ss_pred             ccCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccc
Q 026513           68 IKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVED  147 (237)
Q Consensus        68 ~~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  147 (237)
                      +++|.+|||||||.|.+++.+++.-..+|+|+++|+..++.|++.+...++.+   ++.+..+|..+             
T Consensus        60 l~~G~~VLDiGCG~G~~a~~~a~~~g~~v~git~s~~Q~~~a~~~~~~~g~~~---~v~~~~~d~~~-------------  123 (285)
T d1kpga_          60 LQPGMTLLDVGCGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQLVANSENLR---SKRVLLAGWEQ-------------  123 (285)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTCCCCS---CEEEEESCGGG-------------
T ss_pred             CCCCCEEEEecCcchHHHHHHHhcCCcceEEEeccHHHHHHHHHHHHhhhhhh---hhHHHHhhhhc-------------
Confidence            67899999999999999999886534689999999999999999998888776   57777888652             


Q ss_pred             cccccccCCCCCCceeEEEEeCChHHH-----HHHHHHHhHhcCCCeEEEEeccC
Q 026513          148 LSSHKIRGISQTEKYDVVIANILLNPL-----LQLADHIVSYAKPGAVVGISGIL  197 (237)
Q Consensus       148 ~~~~~~~~~~~~~~fD~I~~n~~~~~~-----~~~l~~~~~~L~~gG~liis~~~  197 (237)
                              +  +++||.|++-..++++     ..+++++.++|+|||.+++..+.
T Consensus       124 --------~--~~~fD~i~si~~~eh~~~~~~~~~~~~~~r~LkpgG~~~l~~i~  168 (285)
T d1kpga_         124 --------F--DEPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTIT  168 (285)
T ss_dssp             --------C--CCCCSEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEEEE
T ss_pred             --------c--cccccceeeehhhhhcCchhHHHHHHHHHhhcCCCCcEEEEEEe
Confidence                    2  4689999998887665     57899999999999999986654

>d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Met-10+ protein-like
domain: Hypothetical protein PH0793
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.66  E-value=2.1e-16  Score=130.23  Aligned_cols=108  Identities=19%  Similarity=0.292  Sum_probs=90.9

Q ss_pred             HHhhccCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccc
Q 026513           64 LRRLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDG  143 (237)
Q Consensus        64 l~~~~~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~  143 (237)
                      +.....+|.+|||+|||+|.+++.+++.+..+|+++|+++.+++.+++|++.|++.+   ++.++++|.++         
T Consensus       101 i~~~~~~g~~VlD~~aG~G~~~l~~a~~~~~~V~avd~n~~a~~~~~~N~~~n~l~~---~v~~~~~D~~~---------  168 (260)
T d2frna1         101 MAKVAKPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVED---RMSAYNMDNRD---------  168 (260)
T ss_dssp             HHHHCCTTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTT---TEEEECSCTTT---------
T ss_pred             HHhhcCCccEEEECcceEcHHHHHHHHhCCcEEEEecCCHHHHHHHHHHHHHhCCCc---eEEEEEcchHH---------
Confidence            334468899999999999999999998888899999999999999999999999987   58899999873         


Q ss_pred             cccccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEecc
Q 026513          144 VVEDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGI  196 (237)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~~  196 (237)
                                  +.....||.|++++|... ..++..+.+.|++||.+.+.++
T Consensus       169 ------------~~~~~~~D~Ii~~~p~~~-~~~l~~a~~~l~~gG~lh~~~~  208 (260)
T d2frna1         169 ------------FPGENIADRILMGYVVRT-HEFIPKALSIAKDGAIIHYHNT  208 (260)
T ss_dssp             ------------CCCCSCEEEEEECCCSSG-GGGHHHHHHHEEEEEEEEEEEE
T ss_pred             ------------hccCCCCCEEEECCCCch-HHHHHHHHhhcCCCCEEEEEec
Confidence                        333568999999987543 3567788889999999976544

>d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methyltransferase SPy1538
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.66  E-value=2.6e-16  Score=119.54  Aligned_cols=104  Identities=18%  Similarity=0.215  Sum_probs=85.7

Q ss_pred             CCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccccc
Q 026513           70 GGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDLS  149 (237)
Q Consensus        70 ~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~  149 (237)
                      .|.+|||+|||+|.+++.++.+|+.+|+++|.++.+++.+++|+..+++.+   +++++++|+....             
T Consensus        14 ~g~~vlDl~~GtG~~~iea~~rga~~v~~ve~~~~a~~~~~~n~~~~~~~~---~~~ii~~D~~~~l-------------   77 (152)
T d2esra1          14 NGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKAEN---RFTLLKMEAERAI-------------   77 (152)
T ss_dssp             CSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHTTTCGG---GEEEECSCHHHHH-------------
T ss_pred             CCCeEEEcCCccCHHHHHHHHhCcceeeeehhchhhhhhhhhhhhhccccc---chhhhcccccccc-------------
Confidence            588999999999999999999999999999999999999999999998876   5889999986321             


Q ss_pred             cccccCCCCCCceeEEEEeCChHH--HHHHHHHHh--HhcCCCeEEEEec
Q 026513          150 SHKIRGISQTEKYDVVIANILLNP--LLQLADHIV--SYAKPGAVVGISG  195 (237)
Q Consensus       150 ~~~~~~~~~~~~fD~I~~n~~~~~--~~~~l~~~~--~~L~~gG~liis~  195 (237)
                          .  ....+||+|++|||+..  ....+..+.  ++|+|+|.+++.+
T Consensus        78 ----~--~~~~~fDiIf~DPPy~~~~~~~~l~~i~~~~~L~~~g~iiiE~  121 (152)
T d2esra1          78 ----D--CLTGRFDLVFLDPPYAKETIVATIEALAAKNLLSEQVMVVCET  121 (152)
T ss_dssp             ----H--HBCSCEEEEEECCSSHHHHHHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred             ----c--ccccccceeEechhhccchHHHHHHHHHHCCCcCCCeEEEEEe
Confidence                0  12578999999999643  244555554  4699999999964

>d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methylase YhhF
species: Escherichia coli [TaxId: 562]

Probab=99.64  E-value=8.3e-16  Score=120.23  Aligned_cols=153  Identities=16%  Similarity=0.106  Sum_probs=106.4

Q ss_pred             CCchhHHHHHHHHHhhc---cCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEec
Q 026513           52 GEHATTKLCLLLLRRLI---KGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLV  128 (237)
Q Consensus        52 g~~~~~~~~~~~l~~~~---~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~  128 (237)
                      +.+|++..+.+.+-..+   -.+.+|||++||+|.+++.++.+|+.+|+.+|.++.+++.+++|+...+..+    +.++
T Consensus        22 ~~RPt~~~vre~lfn~l~~~~~~~~vLDlfaGsG~~giealsrGa~~v~~VE~~~~a~~~~k~N~~~~~~~~----~~ii   97 (183)
T d2fpoa1          22 GLRPTTDRVRETLFNWLAPVIVDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATLKAGN----ARVV   97 (183)
T ss_dssp             -----CHHHHHHHHHHHHHHHTTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCS----EEEE
T ss_pred             CcCcCcHHHHHHHHhhhhcccchhhhhhhhccccceeeeEEecCcceeEEEEEeechhhHHHHHHhhccccc----eeee
Confidence            45788877777765432   3578999999999999999999999999999999999999999999888765    7888


Q ss_pred             cCccccccccccccccccccccccccCCCCCCceeEEEEeCChHH--HHHHHHHHhH--hcCCCeEEEEeccCCCCHHHH
Q 026513          129 PDRTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLNP--LLQLADHIVS--YAKPGAVVGISGILSEQLPHI  204 (237)
Q Consensus       129 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~~~--~~~~l~~~~~--~L~~gG~liis~~~~~~~~~~  204 (237)
                      .+|+++..                  . ....+||+|++|||+..  ...++..+.+  +|+++|.+++.......... 
T Consensus        98 ~~d~~~~l------------------~-~~~~~fDlIf~DPPY~~~~~~~~l~~l~~~~~L~~~~iIiiE~~~~~~~~~-  157 (183)
T d2fpoa1          98 NSNAMSFL------------------A-QKGTPHNIVFVDPPFRRGLLEETINLLEDNGWLADEALIYVESEVENGLPT-  157 (183)
T ss_dssp             CSCHHHHH------------------S-SCCCCEEEEEECCSSSTTTHHHHHHHHHHTTCEEEEEEEEEEEEGGGCSCC-
T ss_pred             eecccccc------------------c-ccccccCEEEEcCccccchHHHHHHHHHHCCCCCCCeEEEEEecCcCCccc-
Confidence            89876321                  1 12578999999999642  3455666554  69999999995322111111 


Q ss_pred             HHHHhhccccceeeecCCEEEEEEEEc
Q 026513          205 INRYSEFLEDILVSEMDDWTCVSGKKK  231 (237)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~w~~~~~~~~  231 (237)
                         ....|..+.....|.-...++++.
T Consensus       158 ---~~~~~~i~k~k~yG~t~i~~~~k~  181 (183)
T d2fpoa1         158 ---VPANWSLHREKVAGQVAYRLYQRE  181 (183)
T ss_dssp             ---CCTTEEEEEEEEETTEEEEEEEEC
T ss_pred             ---CCCCcEEEEEEEeCcEEEEEEEEc
Confidence               112345555556666666555554

>d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Indolethylamine N-methyltransferase, INMT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=9.8e-16  Score=125.06  Aligned_cols=164  Identities=12%  Similarity=0.042  Sum_probs=102.3

Q ss_pred             cCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEE-e---ccCcccccc-----ccc
Q 026513           69 KGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLH-L---VPDRTFTAS-----MNE  139 (237)
Q Consensus        69 ~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~-~---~~~d~~~~~-----~~~  139 (237)
                      .+|.+|||+|||+|.++..++..+..+|+|+|+|+.+++.|++++...+......... +   +.++.....     ...
T Consensus        50 ~~g~~vLDlGcG~G~~~~~~~~~~~~~v~giD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (257)
T d2a14a1          50 LQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLRA  129 (257)
T ss_dssp             CCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCHhHHHHhccccCcEEEecCCHHHHHHHHHHHhhccccchhhhHHHHHHHhccccchHHHHHHHHhh
Confidence            4577999999999999888777777789999999999999999988765442110000 0   000000000     000


Q ss_pred             ccccc-ccccccccccCCCCCCceeEEEEeCChHHH-------HHHHHHHhHhcCCCeEEEEeccCC-------------
Q 026513          140 RVDGV-VEDLSSHKIRGISQTEKYDVVIANILLNPL-------LQLADHIVSYAKPGAVVGISGILS-------------  198 (237)
Q Consensus       140 ~~~~~-~~~~~~~~~~~~~~~~~fD~I~~n~~~~~~-------~~~l~~~~~~L~~gG~liis~~~~-------------  198 (237)
                      .+... .............+.++||+|++...++++       ..+++++.++|||||+++++++..             
T Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~~~~~~~~~~l~~i~~~LkpGG~li~~~~~~~~~~~~~~~~~~~  209 (257)
T d2a14a1         130 AVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLRLPSYMVGKREFSC  209 (257)
T ss_dssp             HEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEEETTEEEEC
T ss_pred             hhhcccccccccccccccccCCcccEEeehhhHHHhcccHHHHHHHHHHHHhccCCCcEEEEEEecccccceeccccccc
Confidence            00000 000000011123346789999999988765       357899999999999999976532             


Q ss_pred             --CCHHHHHHHHhh-ccccceee-----------ecCCEEEEEEEEcc
Q 026513          199 --EQLPHIINRYSE-FLEDILVS-----------EMDDWTCVSGKKKR  232 (237)
Q Consensus       199 --~~~~~~~~~~~~-~~~~~~~~-----------~~~~w~~~~~~~~~  232 (237)
                        -...++...+.. +|+.+++.           ....+..++++|++
T Consensus       210 ~~~~~~~~~~~l~~aGf~v~~~~~~~~~~~~~~~~~~~~~~v~arKkp  257 (257)
T d2a14a1         210 VALEKGEVEQAVLDAGFDIEQLLHSPQSYSVTNAANNGVCCIVARKKP  257 (257)
T ss_dssp             CCCCHHHHHHHHHHTTEEEEEEEEECCCCCTTTCCCCCEEEEEEEECC
T ss_pred             cCCCHHHHHHHHHHCCCEEEEEEEeccccccccCCCCcEEEEEEEeCc
Confidence              246777777765 37655442           24557778888764

>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical methyltransferase TM1389
species: Thermotoga maritima [TaxId: 2336]

Probab=99.63  E-value=4.5e-16  Score=125.85  Aligned_cols=105  Identities=16%  Similarity=0.136  Sum_probs=80.2

Q ss_pred             HHHHHHhhccCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccc
Q 026513           60 CLLLLRRLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNE  139 (237)
Q Consensus        60 ~~~~l~~~~~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~  139 (237)
                      ....+...++++.+|||+|||+|.++..+++.+. +|+|+|+|+.+++.|+++.    ..      .++.+|..+     
T Consensus        32 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~giD~s~~~l~~a~~~~----~~------~~~~~~~~~-----   95 (246)
T d2avna1          32 IGSFLEEYLKNPCRVLDLGGGTGKWSLFLQERGF-EVVLVDPSKEMLEVAREKG----VK------NVVEAKAED-----   95 (246)
T ss_dssp             HHHHHHHHCCSCCEEEEETCTTCHHHHHHHTTTC-EEEEEESCHHHHHHHHHHT----CS------CEEECCTTS-----
T ss_pred             HHHHHHHhcCCCCEEEEECCCCchhcccccccce-EEEEeeccccccccccccc----cc------ccccccccc-----
Confidence            3344455567788999999999999999998854 7999999999999998752    22      134566542     


Q ss_pred             cccccccccccccccCCCCCCceeEEEEeC-ChHHH---HHHHHHHhHhcCCCeEEEEec
Q 026513          140 RVDGVVEDLSSHKIRGISQTEKYDVVIANI-LLNPL---LQLADHIVSYAKPGAVVGISG  195 (237)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~-~~~~~---~~~l~~~~~~L~~gG~liis~  195 (237)
                                     ...++++||+|+|.. +++++   .++++++.++|+|||+++++.
T Consensus        96 ---------------l~~~~~~fD~ii~~~~~~~~~~d~~~~l~~i~r~Lk~gG~~ii~~  140 (246)
T d2avna1          96 ---------------LPFPSGAFEAVLALGDVLSYVENKDKAFSEIRRVLVPDGLLIATV  140 (246)
T ss_dssp             ---------------CCSCTTCEEEEEECSSHHHHCSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ---------------cccccccccceeeecchhhhhhhHHHHHHHHHhhcCcCcEEEEEE
Confidence                           112368999999854 55554   467899999999999999974

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=1.4e-15  Score=122.71  Aligned_cols=126  Identities=14%  Similarity=0.031  Sum_probs=91.8

Q ss_pred             ccCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCC-------------CCcceEEeccCcccc
Q 026513           68 IKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIG-------------PKKMKLHLVPDRTFT  134 (237)
Q Consensus        68 ~~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~-------------~~~~~v~~~~~d~~~  134 (237)
                      ++++.+|||+|||+|..+..+++.|. +|+|+|+|+.+++.|++.....+..             .....+.+.++|.++
T Consensus        43 ~~~~~rvLd~GCG~G~~a~~LA~~G~-~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~  121 (229)
T d2bzga1          43 GKSGLRVFFPLCGKAVEMKWFADRGH-SVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSGNISLYCCSIFD  121 (229)
T ss_dssp             TCCSCEEEETTCTTCTHHHHHHHTTC-EEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCGGG
T ss_pred             CCCCCEEEEeCCCCcHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHhhccccccchhcccccceeeecCCcEEEEEcchhh
Confidence            45788999999999999999999976 6999999999999998875432110             001136677777653


Q ss_pred             ccccccccccccccccccccCCCCCCceeEEEEeCChHH-----HHHHHHHHhHhcCCCeEEEEeccCC-----------
Q 026513          135 ASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLNP-----LLQLADHIVSYAKPGAVVGISGILS-----------  198 (237)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~~~-----~~~~l~~~~~~L~~gG~liis~~~~-----------  198 (237)
                      .                   .....+.||+|+....+++     ...+++.+.++|+|||.+++.++..           
T Consensus       122 l-------------------~~~~~~~fd~i~~~~~l~~~~~~~r~~~~~~~~~~LkpgG~~~l~~~~~~~~~~~gpp~~  182 (229)
T d2bzga1         122 L-------------------PRTNIGKFDMIWDRGALVAINPGDRKCYADTMFSLLGKKFQYLLCVLSYDPTKHPGPPFY  182 (229)
T ss_dssp             G-------------------GGSCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEEEECCTTTCCCSSCC
T ss_pred             c-------------------cccccCceeEEEEEEEEEeccchhhHHHHHHHHhhcCCcceEEEEEcccCCCCCCCCCCC
Confidence            1                   1223578999998776543     3578999999999999988865421           


Q ss_pred             CCHHHHHHHHhhccc
Q 026513          199 EQLPHIINRYSEFLE  213 (237)
Q Consensus       199 ~~~~~~~~~~~~~~~  213 (237)
                      -+..++...+.+.|.
T Consensus       183 ~~~~el~~lf~~~~~  197 (229)
T d2bzga1         183 VPHAEIERLFGKICN  197 (229)
T ss_dssp             CCHHHHHHHHTTTEE
T ss_pred             CCHHHHHHHhcCCCE
Confidence            245677777776543

>d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methyltransferase TTHA0928
species: Thermus thermophilus [TaxId: 274]

Probab=99.63  E-value=6.8e-16  Score=119.44  Aligned_cols=121  Identities=21%  Similarity=0.259  Sum_probs=87.2

Q ss_pred             CchhHHHHHHHH----HhhccCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEec
Q 026513           53 EHATTKLCLLLL----RRLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLV  128 (237)
Q Consensus        53 ~~~~~~~~~~~l----~~~~~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~  128 (237)
                      .+|++..+.+.+    ...+..|.+|||+|||+|.+++.++..|+ +++++|.|+.+++.+++|++.+++..   ++...
T Consensus        20 ~Rpt~~~v~e~lf~~l~~~~~~g~~vLDl~~G~G~~~i~a~~~ga-~vv~vD~~~~a~~~~~~N~~~~~~~~---~v~~~   95 (171)
T d1ws6a1          20 ARPSPVRLRKALFDYLRLRYPRRGRFLDPFAGSGAVGLEAASEGW-EAVLVEKDPEAVRLLKENVRRTGLGA---RVVAL   95 (171)
T ss_dssp             CCCCCHHHHHHHHHHHHHHCTTCCEEEEETCSSCHHHHHHHHTTC-EEEEECCCHHHHHHHHHHHHHHTCCC---EEECS
T ss_pred             CCCCcHHHHHHHHHHhhccccCCCeEEEeccccchhhhhhhhccc-hhhhcccCHHHHhhhhHHHHhhcccc---ceeee
Confidence            466666655543    34456789999999999999999888876 68899999999999999999999875   46555


Q ss_pred             cCccccccccccccccccccccccccCCCCCCceeEEEEeCChHH-HHHHHHHH--hHhcCCCeEEEEec
Q 026513          129 PDRTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLNP-LLQLADHI--VSYAKPGAVVGISG  195 (237)
Q Consensus       129 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~~~-~~~~l~~~--~~~L~~gG~liis~  195 (237)
                      .+|.+..                  .......+||+|++|||+.. ..+.+..+  ..+|+|||.+++..
T Consensus        96 ~~d~~~~------------------~~~~~~~~fD~If~DPPY~~~~~~~l~~l~~~~ll~~~g~ivie~  147 (171)
T d1ws6a1          96 PVEVFLP------------------EAKAQGERFTVAFMAPPYAMDLAALFGELLASGLVEAGGLYVLQH  147 (171)
T ss_dssp             CHHHHHH------------------HHHHTTCCEEEEEECCCTTSCTTHHHHHHHHHTCEEEEEEEEEEE
T ss_pred             ehhcccc------------------cccccCCccceeEEccccccCHHHHHHHHHHcCCcCCCeEEEEEe
Confidence            5554310                  01122568999999999632 12233333  24799999999853

>d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Thermotoga maritima [TaxId: 2336]

Probab=99.63  E-value=1e-14  Score=120.38  Aligned_cols=163  Identities=17%  Similarity=0.250  Sum_probs=111.7

Q ss_pred             ceeEEeCcccccCCCCchhHHHHHHHHHhh--ccCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHH
Q 026513           38 ATNIILNPGLAFGSGEHATTKLCLLLLRRL--IKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAAL  115 (237)
Q Consensus        38 ~~~~~~~~~~~f~~g~~~~~~~~~~~l~~~--~~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~  115 (237)
                      ..++.++|+...-   ++.|..+.+.+...  ..+..+++|+|||+|..++.+++.+..+|+++|+|+.+++.|++|++.
T Consensus        79 ~~~f~v~~~vlIP---RpeTE~lv~~~~~~~~~~~~~~vld~g~GsG~i~~~la~~~~~~v~a~Dis~~Al~~A~~Na~~  155 (271)
T d1nv8a_          79 GLSFLVEEGVFVP---RPETEELVELALELIRKYGIKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAER  155 (271)
T ss_dssp             TEEEECCTTSCCC---CTTHHHHHHHHHHHHHHHTCCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHHHHHHH
T ss_pred             eeEEEEecCccCc---hhhhhhhhhhhhhhhccccccEEEEeeeeeehhhhhhhhcccceeeechhhhhHHHHHHHHHHH
Confidence            3566777764432   66666666665443  233468999999999999999888888999999999999999999999


Q ss_pred             cCCCCCcceEEeccCccccccccccccccccccccccccCCCCCCceeEEEEeCCh------------------------
Q 026513          116 NNIGPKKMKLHLVPDRTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILL------------------------  171 (237)
Q Consensus       116 ~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~------------------------  171 (237)
                      +++.+   ++.+..+|++++..                   ...++||+|++|||+                        
T Consensus       156 ~~~~~---~~~i~~~~~~~~~~-------------------~~~~~fDlIVsNPPYI~~~~~l~~~~~~EP~~AL~gg~d  213 (271)
T d1nv8a_         156 HGVSD---RFFVRKGEFLEPFK-------------------EKFASIEMILSNPPYVKSSAHLPKDVLFEPPEALFGGED  213 (271)
T ss_dssp             TTCTT---SEEEEESSTTGGGG-------------------GGTTTCCEEEECCCCBCGGGSCTTSCCCSCHHHHBCTTT
T ss_pred             cCCCc---eeEEeecccccccc-------------------cccCcccEEEEcccccCcccccceeeeeccccccccccc
Confidence            99876   47777888764221                   113689999999993                        


Q ss_pred             --HHHHHHHHHHhHhcCCCeEEEEeccCCCCHHHHHHHHhhccccceeeecCCEEEEEEEEc
Q 026513          172 --NPLLQLADHIVSYAKPGAVVGISGILSEQLPHIINRYSEFLEDILVSEMDDWTCVSGKKK  231 (237)
Q Consensus       172 --~~~~~~l~~~~~~L~~gG~liis~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~  231 (237)
                        ..++++   +.++|+|||.+++-. -..+...+.+.+.+. .+ ..-..+..-++.++|+
T Consensus       214 Gl~~~r~i---~~~~L~~~G~l~~Ei-g~~Q~~~v~~l~~~~-g~-~kDl~g~~R~~~~~k~  269 (271)
T d1nv8a_         214 GLDFYREF---FGRYDTSGKIVLMEI-GEDQVEELKKIVSDT-VF-LKDSAGKYRFLLLNRR  269 (271)
T ss_dssp             SCHHHHHH---HHHCCCTTCEEEEEC-CTTCHHHHTTTSTTC-EE-EECTTSSEEEEEEECC
T ss_pred             hHHHHHHH---HHHhcCCCCEEEEEE-CHHHHHHHHHHHHhC-CE-EeccCCCcEEEEEEEc
Confidence              223344   457899999988842 234455555444432 11 1122444566666654

>d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810)
species: Leishmania major [TaxId: 5664]

Probab=99.62  E-value=2e-15  Score=123.90  Aligned_cols=102  Identities=16%  Similarity=0.103  Sum_probs=82.2

Q ss_pred             cCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccccc
Q 026513           69 KGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDL  148 (237)
Q Consensus        69 ~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~  148 (237)
                      .++.+|||+|||+|.++..++..+..+|+++|+|+.+++.|++++...+      .+.+.++|+.+..            
T Consensus        92 ~~~~~vLD~GcG~G~~t~~ll~~~~~~v~~vD~s~~~l~~a~~~~~~~~------~~~~~~~d~~~~~------------  153 (254)
T d1xtpa_          92 HGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAGMP------VGKFILASMETAT------------  153 (254)
T ss_dssp             CCCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTTTSS------EEEEEESCGGGCC------------
T ss_pred             CCCCeEEEecccCChhhHHHHhhcCceEEEEcCCHHHHHhhhccccccc------cceeEEccccccc------------
Confidence            3567999999999999998876656789999999999999998765332      3678888875321            


Q ss_pred             ccccccCCCCCCceeEEEEeCChHHH-----HHHHHHHhHhcCCCeEEEEecc
Q 026513          149 SSHKIRGISQTEKYDVVIANILLNPL-----LQLADHIVSYAKPGAVVGISGI  196 (237)
Q Consensus       149 ~~~~~~~~~~~~~fD~I~~n~~~~~~-----~~~l~~~~~~L~~gG~liis~~  196 (237)
                              ..+++||+|++..+++++     .++++++.+.|+|||.+++.+.
T Consensus       154 --------~~~~~fD~I~~~~vl~hl~d~d~~~~l~~~~~~LkpgG~iii~e~  198 (254)
T d1xtpa_         154 --------LPPNTYDLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKEN  198 (254)
T ss_dssp             --------CCSSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             --------cCCCccceEEeeccccccchhhhHHHHHHHHHhcCCCcEEEEEec
Confidence                    235789999999998776     3679999999999999999643

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.61  E-value=3.9e-15  Score=122.42  Aligned_cols=125  Identities=17%  Similarity=0.173  Sum_probs=98.3

Q ss_pred             ccCCCeEEEEcCcchHHHHHHHHh--CCCeEEEEeCCHHHHHHHHHHHHHcC---CCCCcceEEeccCcccccccccccc
Q 026513           68 IKGGELFLDYGTGSGILGIAAIKF--GAAMSVGADIDPQAIKSAHQNAALNN---IGPKKMKLHLVPDRTFTASMNERVD  142 (237)
Q Consensus        68 ~~~~~~vLDlG~G~G~~~~~la~~--~~~~v~~vD~s~~~i~~a~~~~~~~~---~~~~~~~v~~~~~d~~~~~~~~~~~  142 (237)
                      +.||.+|||+|||+|.++..+++.  +..+|+++|+++++++.|++|++...   ..    .+.+.++|..+.       
T Consensus        94 i~PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~~~~~----nv~~~~~d~~~~-------  162 (264)
T d1i9ga_          94 IFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPD----NWRLVVSDLADS-------  162 (264)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCT----TEEEECSCGGGC-------
T ss_pred             CCCCCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhccCCCc----eEEEEecccccc-------
Confidence            689999999999999999999975  56799999999999999999987642   23    378889987642       


Q ss_pred             ccccccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEeccCCCCHHHHHHHHh-hc-cccceee
Q 026513          143 GVVEDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILSEQLPHIINRYS-EF-LEDILVS  218 (237)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~~~~~~~~~~~~~~~-~~-~~~~~~~  218 (237)
                                   ..++..||.|+++.+-.  ..++..+.+.|||||.+++..-..++...+...++ .+ |..+++.
T Consensus       163 -------------~~~~~~fDaV~ldlp~P--~~~l~~~~~~LkpGG~lv~~~P~i~Qv~~~~~~l~~~~~f~~i~~~  225 (264)
T d1i9ga_         163 -------------ELPDGSVDRAVLDMLAP--WEVLDAVSRLLVAGGVLMVYVATVTQLSRIVEALRAKQCWTEPRAW  225 (264)
T ss_dssp             -------------CCCTTCEEEEEEESSCG--GGGHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHHHSSBCCCEEE
T ss_pred             -------------cccCCCcceEEEecCCH--HHHHHHHHhccCCCCEEEEEeCccChHHHHHHHHHHcCCeecceEE
Confidence                         22367999999987654  36788999999999999887655666677777775 33 6555543

>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein TM0748
species: Thermotoga maritima [TaxId: 2336]

Probab=99.61  E-value=5.3e-15  Score=122.05  Aligned_cols=126  Identities=15%  Similarity=0.142  Sum_probs=100.8

Q ss_pred             ccCCCeEEEEcCcchHHHHHHHHh--CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccc
Q 026513           68 IKGGELFLDYGTGSGILGIAAIKF--GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVV  145 (237)
Q Consensus        68 ~~~~~~vLDlG~G~G~~~~~la~~--~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  145 (237)
                      +.+|.+|||+|||+|.++..+++.  +..+|+++|+++++++.|++++...++.+   .+.+...|...           
T Consensus       101 i~pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g~~~---~v~~~~~d~~~-----------  166 (266)
T d1o54a_         101 VKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIE---RVTIKVRDISE-----------  166 (266)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGG---GEEEECCCGGG-----------
T ss_pred             CCCCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhcccc---CcEEEeccccc-----------
Confidence            689999999999999999999975  45789999999999999999999988754   36677777542           


Q ss_pred             cccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEeccCCCCHHHHHHHHhhc-cccceeee
Q 026513          146 EDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILSEQLPHIINRYSEF-LEDILVSE  219 (237)
Q Consensus       146 ~~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~~~~~~~~~~~~~~~~~-~~~~~~~~  219 (237)
                                ......||.|+.+.+-.  .++++++.++|||||.+++.+...++..++...+... |..+++.+
T Consensus       167 ----------~~~~~~~D~V~~d~p~p--~~~l~~~~~~LKpGG~lv~~~P~~~Qv~~~~~~l~~~gF~~i~~~E  229 (266)
T d1o54a_         167 ----------GFDEKDVDALFLDVPDP--WNYIDKCWEALKGGGRFATVCPTTNQVQETLKKLQELPFIRIEVWE  229 (266)
T ss_dssp             ----------CCSCCSEEEEEECCSCG--GGTHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHHSSEEEEEEEC
T ss_pred             ----------cccccceeeeEecCCCH--HHHHHHHHhhcCCCCEEEEEeCcccHHHHHHHHHHHCCceeEEEEE
Confidence                      22356899999987643  4678999999999999998776667777777777764 66555543

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=99.60  E-value=1.3e-15  Score=118.95  Aligned_cols=107  Identities=9%  Similarity=-0.017  Sum_probs=79.2

Q ss_pred             ccCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCC--------cceEEeccCccccccccc
Q 026513           68 IKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPK--------KMKLHLVPDRTFTASMNE  139 (237)
Q Consensus        68 ~~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~--------~~~v~~~~~d~~~~~~~~  139 (237)
                      +++|.+|||+|||+|..+..+++.|. +|+|+|+|+.+++.|++.++..+....        .....+.++|..+..   
T Consensus        18 ~~~~~rvLd~GCG~G~~a~~la~~G~-~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~---   93 (201)
T d1pjza_          18 VVPGARVLVPLCGKSQDMSWLSGQGY-HVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALT---   93 (201)
T ss_dssp             CCTTCEEEETTTCCSHHHHHHHHHCC-EEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSST---
T ss_pred             CCCCCEEEEecCcCCHHHHHHHHcCC-ceEeecccHHHHHHHHHHhccccchhhhhhhhhccccccceecccccccc---
Confidence            67899999999999999999999975 699999999999999998865432100        001234445443210   


Q ss_pred             cccccccccccccccCCCCCCceeEEEEeCChHH-----HHHHHHHHhHhcCCCeEEEEe
Q 026513          140 RVDGVVEDLSSHKIRGISQTEKYDVVIANILLNP-----LLQLADHIVSYAKPGAVVGIS  194 (237)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~~~-----~~~~l~~~~~~L~~gG~liis  194 (237)
                                      ......||+|++...+++     ...+++++.+.|||||.+++.
T Consensus        94 ----------------~~~~~~~D~i~~~~~l~~l~~~~~~~~~~~i~~~LkpgG~l~l~  137 (201)
T d1pjza_          94 ----------------ARDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLI  137 (201)
T ss_dssp             ----------------HHHHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEE
T ss_pred             ----------------cccccceeEEEEEeeeEecchhhhHHHHHHHHHhcCCCcEEEEE
Confidence                            011357999999887654     356799999999999998875

>d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Guanidinoacetate methyltransferase
domain: Guanidinoacetate methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=1.5e-15  Score=122.67  Aligned_cols=105  Identities=12%  Similarity=0.083  Sum_probs=81.1

Q ss_pred             hccCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccc
Q 026513           67 LIKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVE  146 (237)
Q Consensus        67 ~~~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  146 (237)
                      ...+|.+|||||||+|..+..+++.+..+++++|+|+.+++.|++++...+.     .+.++.+++...           
T Consensus        50 ~~~~g~~VLdIGcG~G~~a~~~a~~~~~~v~~id~s~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~-----------  113 (229)
T d1zx0a1          50 ASSKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQTH-----KVIPLKGLWEDV-----------  113 (229)
T ss_dssp             HTTTCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHHHGGGCSS-----EEEEEESCHHHH-----------
T ss_pred             hccCCCeEEEeeccchHHHHHHHHcCCCeEEEeCCCHHHHHHHHHHhhhccc-----cccccccccccc-----------
Confidence            4567889999999999999999987667899999999999999999776543     255666665421           


Q ss_pred             ccccccccCCCCCCceeEEEEeCCh--------HHHHHHHHHHhHhcCCCeEEEEe
Q 026513          147 DLSSHKIRGISQTEKYDVVIANILL--------NPLLQLADHIVSYAKPGAVVGIS  194 (237)
Q Consensus       147 ~~~~~~~~~~~~~~~fD~I~~n~~~--------~~~~~~l~~~~~~L~~gG~liis  194 (237)
                             ....++++||.|+.+...        .....+++.+.++|||||++++.
T Consensus       114 -------~~~~~~~~fD~i~fD~~~~~~~~~~~~~~~~~~~~~~r~LkpGG~~~~~  162 (229)
T d1zx0a1         114 -------APTLPDGHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYC  162 (229)
T ss_dssp             -------GGGSCTTCEEEEEECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEEC
T ss_pred             -------ccccccccccceeecccccccccccccCHHHHHHHHHHHcCCCcEEEEE
Confidence                   112236799999987642        22356789999999999999874

>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.60  E-value=2.3e-15  Score=120.46  Aligned_cols=100  Identities=17%  Similarity=0.289  Sum_probs=83.0

Q ss_pred             ccCCCeEEEEcCcchHHHHHHHHh--CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccc
Q 026513           68 IKGGELFLDYGTGSGILGIAAIKF--GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVV  145 (237)
Q Consensus        68 ~~~~~~vLDlG~G~G~~~~~la~~--~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  145 (237)
                      +++|.+|||+|||+|.++..+++.  ...+|+++|+++.+++.|++++...++.+    +.++.+|..+           
T Consensus        73 l~~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~~n----~~~~~~d~~~-----------  137 (213)
T d1dl5a1          73 LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIEN----VIFVCGDGYY-----------  137 (213)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCS----EEEEESCGGG-----------
T ss_pred             ccccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhcccc----cccccCchHH-----------
Confidence            689999999999999999999875  35689999999999999999999998886    7777888753           


Q ss_pred             cccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEe
Q 026513          146 EDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGIS  194 (237)
Q Consensus       146 ~~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis  194 (237)
                               .+...++||+|+++...+.+   .+.+.+.|+|||+|++.
T Consensus       138 ---------~~~~~~~fD~I~~~~~~~~~---p~~l~~~LkpGG~lv~p  174 (213)
T d1dl5a1         138 ---------GVPEFSPYDVIFVTVGVDEV---PETWFTQLKEGGRVIVP  174 (213)
T ss_dssp             ---------CCGGGCCEEEEEECSBBSCC---CHHHHHHEEEEEEEEEE
T ss_pred             ---------ccccccchhhhhhhccHHHh---HHHHHHhcCCCcEEEEE
Confidence                     22335689999998876554   34567889999999883

>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: BC2162-like
domain: Methyltransferase BC2162
species: Bacillus cereus [TaxId: 1396]

Probab=99.59  E-value=2.3e-15  Score=125.19  Aligned_cols=102  Identities=20%  Similarity=0.298  Sum_probs=84.3

Q ss_pred             ccCCCeEEEEcCcchHHHHHHHHh-C-CCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccc
Q 026513           68 IKGGELFLDYGTGSGILGIAAIKF-G-AAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVV  145 (237)
Q Consensus        68 ~~~~~~vLDlG~G~G~~~~~la~~-~-~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  145 (237)
                      +.++.+|||+|||+|.++..++.. + ..+|+|+|+|+.+++.|++++...+.     ++.+.++|+.+           
T Consensus        25 ~~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~-----~~~f~~~d~~~-----------   88 (281)
T d2gh1a1          25 ITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPY-----DSEFLEGDATE-----------   88 (281)
T ss_dssp             CCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSSSS-----EEEEEESCTTT-----------
T ss_pred             cCCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhcccccccc-----ccccccccccc-----------
Confidence            456789999999999999999864 3 46799999999999999999987664     37888888763           


Q ss_pred             cccccccccCCCCCCceeEEEEeCChHHH---HHHHHHHhHhcCCCeEEEEec
Q 026513          146 EDLSSHKIRGISQTEKYDVVIANILLNPL---LQLADHIVSYAKPGAVVGISG  195 (237)
Q Consensus       146 ~~~~~~~~~~~~~~~~fD~I~~n~~~~~~---~~~l~~~~~~L~~gG~liis~  195 (237)
                                +...++||+|+|+.+++++   ..+++++.+.|||||.+++..
T Consensus        89 ----------~~~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~lii~~  131 (281)
T d2gh1a1          89 ----------IELNDKYDIAICHAFLLHMTTPETMLQKMIHSVKKGGKIICFE  131 (281)
T ss_dssp             ----------CCCSSCEEEEEEESCGGGCSSHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             ----------ccccCCceEEEEehhhhcCCCHHHHHHHHHHHcCcCcEEEEEE
Confidence                      2224589999999998765   468999999999999998753

>d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase EF2452
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.58  E-value=3.1e-15  Score=116.84  Aligned_cols=125  Identities=20%  Similarity=0.235  Sum_probs=97.0

Q ss_pred             CCchhHHHHHHHHHhhc---cCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEec
Q 026513           52 GEHATTKLCLLLLRRLI---KGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLV  128 (237)
Q Consensus        52 g~~~~~~~~~~~l~~~~---~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~  128 (237)
                      +.+|++..+.+.+-..+   ..|.+|||++||+|.+++.++..|+.+|+++|.++.+++.+++|+...+..+   ++.++
T Consensus        20 ~~RPt~~~vrealFn~l~~~~~~~~vLDlfaGsG~~g~ea~srGa~~v~~ve~~~~a~~~~~~N~~~~~~~~---~~~i~   96 (182)
T d2fhpa1          20 NTRPTTDKVKESIFNMIGPYFDGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIAITKEPE---KFEVR   96 (182)
T ss_dssp             SSCCCCHHHHHHHHHHHCSCCSSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHTCGG---GEEEE
T ss_pred             CcCcCcHHHHHHHHHHHHHhcCCCEEEEcccccccccceeeecchhHHHHHHHHHHHHHHHHHHhhhhhccc---ccccc
Confidence            44777777777775543   3689999999999999999999999999999999999999999999888764   48888


Q ss_pred             cCccccccccccccccccccccccccCCCCCCceeEEEEeCChHH--HHHHHHHHhH--hcCCCeEEEEec
Q 026513          129 PDRTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLNP--LLQLADHIVS--YAKPGAVVGISG  195 (237)
Q Consensus       129 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~~~--~~~~l~~~~~--~L~~gG~liis~  195 (237)
                      ++|+.+.         ++.+       .....+||+|++|||+..  +..++..+..  +|+++|.+++..
T Consensus        97 ~~D~~~~---------l~~~-------~~~~~~fDlIflDPPY~~~~~~~~l~~i~~~~~L~~~giIi~E~  151 (182)
T d2fhpa1          97 KMDANRA---------LEQF-------YEEKLQFDLVLLDPPYAKQEIVSQLEKMLERQLLTNEAVIVCET  151 (182)
T ss_dssp             ESCHHHH---------HHHH-------HHTTCCEEEEEECCCGGGCCHHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred             cccchhh---------hhhh-------cccCCCcceEEechhhhhhHHHHHHHHHHHCCCCCCCEEEEEEc
Confidence            9998631         1110       112468999999999742  3456666654  699999999854

>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein ECA1738
species: Erwinia carotovora [TaxId: 554]

Probab=99.58  E-value=3.2e-15  Score=120.28  Aligned_cols=106  Identities=12%  Similarity=0.140  Sum_probs=81.6

Q ss_pred             HHHHHHHhhccCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccc
Q 026513           59 LCLLLLRRLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMN  138 (237)
Q Consensus        59 ~~~~~l~~~~~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~  138 (237)
                      ..++.+.... ++.+|||+|||+|.++..+++.+ .+|+|+|+|+.+++.|+++..    .    .+.++.++..+    
T Consensus        10 ~~~~~~~~~~-~~~~VLDiGcG~G~~~~~l~~~g-~~v~giD~s~~~i~~a~~~~~----~----~~~~~~~~~~~----   75 (225)
T d2p7ia1          10 FMVRAFTPFF-RPGNLLELGSFKGDFTSRLQEHF-NDITCVEASEEAISHAQGRLK----D----GITYIHSRFED----   75 (225)
T ss_dssp             HHHHHHGGGC-CSSCEEEESCTTSHHHHHHTTTC-SCEEEEESCHHHHHHHHHHSC----S----CEEEEESCGGG----
T ss_pred             HHHHHhhhhC-CCCcEEEEeCCCcHHHHHHHHcC-CeEEEEeCcHHHhhhhhcccc----c----ccccccccccc----
Confidence            3444444443 45689999999999999998876 469999999999999987642    1    26777887652    


Q ss_pred             ccccccccccccccccCCCCCCceeEEEEeCChHHH---HHHHHHHh-HhcCCCeEEEEec
Q 026513          139 ERVDGVVEDLSSHKIRGISQTEKYDVVIANILLNPL---LQLADHIV-SYAKPGAVVGISG  195 (237)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~~~~---~~~l~~~~-~~L~~gG~liis~  195 (237)
                                       ...+++||+|++..+++++   ..++.++. ++|+|||.++++.
T Consensus        76 -----------------~~~~~~fD~I~~~~vleh~~d~~~~l~~i~~~~Lk~gG~l~i~~  119 (225)
T d2p7ia1          76 -----------------AQLPRRYDNIVLTHVLEHIDDPVALLKRINDDWLAEGGRLFLVC  119 (225)
T ss_dssp             -----------------CCCSSCEEEEEEESCGGGCSSHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred             -----------------cccccccccccccceeEecCCHHHHHHHHHHHhcCCCceEEEEe
Confidence                             2235799999999998775   45677787 7899999999963

>d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein PH1948
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.58  E-value=3.4e-15  Score=118.37  Aligned_cols=109  Identities=17%  Similarity=0.248  Sum_probs=80.7

Q ss_pred             cCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccccc
Q 026513           69 KGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDL  148 (237)
Q Consensus        69 ~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~  148 (237)
                      -.|++|||+|||+|.+++.++..|+.+|+|+|+|+.+++.|++|+..++..     ..++.+|...              
T Consensus        45 l~g~~vLDlg~GtG~l~i~a~~~g~~~v~~vdi~~~~~~~a~~N~~~~~~~-----~~~~~~d~~~--------------  105 (201)
T d1wy7a1          45 IEGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEFKGK-----FKVFIGDVSE--------------  105 (201)
T ss_dssp             STTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHTGGGTTS-----EEEEESCGGG--------------
T ss_pred             CCCCEEEECcCcchHHHHHHHHcCCCEEEEEcCcHHHHHHHHHHHHHcCCC-----ceEEECchhh--------------
Confidence            368899999999999999988888889999999999999999999887754     6677787652              


Q ss_pred             ccccccCCCCCCceeEEEEeCChHHH-----HHHHHHHhHhcCCCeEEEEeccCCCCHHHHHHHH
Q 026513          149 SSHKIRGISQTEKYDVVIANILLNPL-----LQLADHIVSYAKPGAVVGISGILSEQLPHIINRY  208 (237)
Q Consensus       149 ~~~~~~~~~~~~~fD~I~~n~~~~~~-----~~~l~~~~~~L~~gG~liis~~~~~~~~~~~~~~  208 (237)
                             +  .++||+|++|||+...     ..++..   .+.+++.++...............+
T Consensus       106 -------~--~~~fD~Vi~nPP~~~~~~~~d~~~l~~---~~~~~~~v~~ih~~~~~~~~~i~~~  158 (201)
T d1wy7a1         106 -------F--NSRVDIVIMNPPFGSQRKHADRPFLLK---AFEISDVVYSIHLAKPEVRRFIEKF  158 (201)
T ss_dssp             -------C--CCCCSEEEECCCCSSSSTTTTHHHHHH---HHHHCSEEEEEEECCHHHHHHHHHH
T ss_pred             -------h--CCcCcEEEEcCccccccccccHHHHHH---HHhhcccchhcccchHHHHHHHHHH
Confidence                   1  5689999999996322     123332   3344566666655555544444443

>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=4.5e-15  Score=119.60  Aligned_cols=114  Identities=19%  Similarity=0.260  Sum_probs=87.1

Q ss_pred             HHHHHHHHhhccCCCeEEEEcCcchHHHHHHHHh--CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCc-ceEEeccCcccc
Q 026513           58 KLCLLLLRRLIKGGELFLDYGTGSGILGIAAIKF--GAAMSVGADIDPQAIKSAHQNAALNNIGPKK-MKLHLVPDRTFT  134 (237)
Q Consensus        58 ~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~la~~--~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~-~~v~~~~~d~~~  134 (237)
                      ..+++.|...+++|.+|||+|||+|+.+..+++.  +..+|+++|+++++++.|++++...++.+.. -.+.+..+|...
T Consensus        64 a~~le~L~~~l~~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~gD~~~  143 (224)
T d1i1na_          64 AYALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRM  143 (224)
T ss_dssp             HHHHHHTTTTSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGG
T ss_pred             HHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccccceEEEEeeccc
Confidence            4555555445689999999999999999998875  4668999999999999999999876653210 136777888763


Q ss_pred             ccccccccccccccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEe
Q 026513          135 ASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGIS  194 (237)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis  194 (237)
                      .                    .....+||+|+++...+..   .+.+.+.|+|||+|++-
T Consensus       144 ~--------------------~~~~~~fD~I~~~~~~~~i---p~~l~~~LkpGG~LV~p  180 (224)
T d1i1na_         144 G--------------------YAEEAPYDAIHVGAAAPVV---PQALIDQLKPGGRLILP  180 (224)
T ss_dssp             C--------------------CGGGCCEEEEEECSBBSSC---CHHHHHTEEEEEEEEEE
T ss_pred             c--------------------cchhhhhhhhhhhcchhhc---CHHHHhhcCCCcEEEEE
Confidence            2                    2335789999998876543   35578899999999984

>d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Bacillus subtilis [TaxId: 1423]

Probab=99.57  E-value=6.4e-15  Score=116.96  Aligned_cols=104  Identities=13%  Similarity=0.098  Sum_probs=85.9

Q ss_pred             CCCeEEEEcCcchHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccccc
Q 026513           70 GGELFLDYGTGSGILGIAAIKF-GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDL  148 (237)
Q Consensus        70 ~~~~vLDlG~G~G~~~~~la~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~  148 (237)
                      ++..|||||||+|.++..+|+. +...++|+|+++.++..|.+++...+++|    +.++.+|+..              
T Consensus        29 ~~PlvLeIGcG~G~~~~~lA~~~p~~~~iGiD~~~~~i~~a~~~~~~~~l~N----v~~~~~Da~~--------------   90 (204)
T d2fcaa1          29 DNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQN----VKLLNIDADT--------------   90 (204)
T ss_dssp             CCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSS----EEEECCCGGG--------------
T ss_pred             CCceEEEEEecCcHHHHHHHHhCCCCcEEEeecchHHHHHHHHHHHHHhccC----chhcccchhh--------------
Confidence            4558999999999999998864 77889999999999999999999999987    9999999863              


Q ss_pred             ccccccCCCCCCceeEEEEeCChHH-----------HHHHHHHHhHhcCCCeEEEEec
Q 026513          149 SSHKIRGISQTEKYDVVIANILLNP-----------LLQLADHIVSYAKPGAVVGISG  195 (237)
Q Consensus       149 ~~~~~~~~~~~~~fD~I~~n~~~~~-----------~~~~l~~~~~~L~~gG~liis~  195 (237)
                          +....++.++|.|+++.|..+           ...+++.+.+.|||||.|++..
T Consensus        91 ----l~~~~~~~~~d~v~i~fp~P~~k~~h~k~Rl~~~~~l~~~~r~LkpgG~l~i~T  144 (204)
T d2fcaa1          91 ----LTDVFEPGEVKRVYLNFSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKT  144 (204)
T ss_dssp             ----HHHHCCTTSCCEEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEE
T ss_pred             ----hhcccCchhhhccccccccccchhhhcchhhhHHHHHHHHHHhCCCCcEEEEEE
Confidence                112234678999998766422           1368999999999999999863

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.55  E-value=1.2e-14  Score=121.35  Aligned_cols=109  Identities=19%  Similarity=0.219  Sum_probs=78.7

Q ss_pred             cCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccccc
Q 026513           69 KGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDL  148 (237)
Q Consensus        69 ~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~  148 (237)
                      .++.+|||+|||+|.++..+++.|. +|+|+|+|+.|++.|+++....+.........+...++...             
T Consensus        55 ~~~~~vLD~GcG~G~~~~~la~~g~-~v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~~~~~~~~~-------------  120 (292)
T d1xvaa_          55 HGCHRVLDVACGTGVDSIMLVEEGF-SVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTL-------------  120 (292)
T ss_dssp             TTCCEEEESSCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGH-------------
T ss_pred             cCCCEEEEecCCCcHHHHHHHHcCC-eeeeccCchHHHHHHHHHHHhcccccccceeeeeecccccc-------------
Confidence            4577999999999999999999864 69999999999999999987766542111122233333210             


Q ss_pred             ccccccCCCCCCceeEEEEeC-ChH----------HHHHHHHHHhHhcCCCeEEEEec
Q 026513          149 SSHKIRGISQTEKYDVVIANI-LLN----------PLLQLADHIVSYAKPGAVVGISG  195 (237)
Q Consensus       149 ~~~~~~~~~~~~~fD~I~~n~-~~~----------~~~~~l~~~~~~L~~gG~liis~  195 (237)
                         + .......+||+|+|.. ++.          ....+++++.++|+|||.|++..
T Consensus       121 ---~-~~~~~~~~fd~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~  174 (292)
T d1xvaa_         121 ---D-KDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDH  174 (292)
T ss_dssp             ---H-HHSCCTTCEEEEEECSSCGGGSCCTTSSSHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             ---c-cccCCCCCceEEEEecCchhhcCCcccChHHHHHHHHHHHHHcCcCcEEEEee
Confidence               0 1223357899999843 333          34568999999999999999963

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.54  E-value=3.7e-14  Score=112.91  Aligned_cols=104  Identities=15%  Similarity=0.109  Sum_probs=82.6

Q ss_pred             ccCCCeEEEEcCcchHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccc
Q 026513           68 IKGGELFLDYGTGSGILGIAAIKF-GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVE  146 (237)
Q Consensus        68 ~~~~~~vLDlG~G~G~~~~~la~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  146 (237)
                      ++||.+|||+|||+|..+..++.. +..+|+|+|+|+.+++.|+++++..+  +    +.++.+|...+...        
T Consensus        54 lkpg~~VLDlGcG~G~~~~~la~~v~~g~V~gvDis~~~i~~a~~~a~~~~--n----i~~i~~d~~~~~~~--------  119 (209)
T d1nt2a_          54 LRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERN--N----IIPLLFDASKPWKY--------  119 (209)
T ss_dssp             CCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCS--S----EEEECSCTTCGGGT--------
T ss_pred             CCCCCEEEEeCCcCCHHHHHHHHhccCCeEEEEeCCHHHHHHHHHHhhccC--C----ceEEEeeccCcccc--------
Confidence            678999999999999999999975 66789999999999999999987654  3    77888887643211        


Q ss_pred             ccccccccCCCCCCceeEEEEeCCh-HHHHHHHHHHhHhcCCCeEEEEe
Q 026513          147 DLSSHKIRGISQTEKYDVVIANILL-NPLLQLADHIVSYAKPGAVVGIS  194 (237)
Q Consensus       147 ~~~~~~~~~~~~~~~fD~I~~n~~~-~~~~~~l~~~~~~L~~gG~liis  194 (237)
                               ......+|+|+++.+. .....++.++.+.|||||++++.
T Consensus       120 ---------~~~~~~vd~v~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~  159 (209)
T d1nt2a_         120 ---------SGIVEKVDLIYQDIAQKNQIEILKANAEFFLKEKGEVVIM  159 (209)
T ss_dssp             ---------TTTCCCEEEEEECCCSTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             ---------ccccceEEEEEecccChhhHHHHHHHHHHHhccCCeEEEE
Confidence                     1113468888887653 44456789999999999999985

>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.54  E-value=6.7e-14  Score=112.69  Aligned_cols=140  Identities=16%  Similarity=0.183  Sum_probs=97.0

Q ss_pred             ccCCCeEEEEcCcchHHHHHHHHh--CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccc
Q 026513           68 IKGGELFLDYGTGSGILGIAAIKF--GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVV  145 (237)
Q Consensus        68 ~~~~~~vLDlG~G~G~~~~~la~~--~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  145 (237)
                      ++||.+|||+|||+|.++..+++.  +..+|+|+|+++.+++.++++++..+  +    +..+..|...+..        
T Consensus        71 i~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~~~--~----~~~i~~d~~~~~~--------  136 (227)
T d1g8aa_          71 IKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERR--N----IVPILGDATKPEE--------  136 (227)
T ss_dssp             CCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCT--T----EEEEECCTTCGGG--------
T ss_pred             cCCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHhcC--C----ceEEEEECCCccc--------
Confidence            678999999999999999999976  46789999999999999999876543  2    4455666542110        


Q ss_pred             cccccccccCCCCCCceeEEEEeCChH-HHHHHHHHHhHhcCCCeEEEEecc-----CCCCHHHHHH----HHhhccccc
Q 026513          146 EDLSSHKIRGISQTEKYDVVIANILLN-PLLQLADHIVSYAKPGAVVGISGI-----LSEQLPHIIN----RYSEFLEDI  215 (237)
Q Consensus       146 ~~~~~~~~~~~~~~~~fD~I~~n~~~~-~~~~~l~~~~~~L~~gG~liis~~-----~~~~~~~~~~----~~~~~~~~~  215 (237)
                               .......+|+|+++.+.. ....++.++.+.|+|||+++++..     .......+..    ...+.|+.+
T Consensus       137 ---------~~~~~~~vD~i~~d~~~~~~~~~~l~~~~~~LkpgG~lvi~~ka~~~~~~~~~~~v~~~v~~l~~~gf~ii  207 (227)
T d1g8aa_         137 ---------YRALVPKVDVIFEDVAQPTQAKILIDNAEVYLKRGGYGMIAVKSRSIDVTKEPEQVFREVERELSEYFEVI  207 (227)
T ss_dssp             ---------GTTTCCCEEEEEECCCSTTHHHHHHHHHHHHEEEEEEEEEEEEGGGTCTTSCHHHHHHHHHHHHHTTSEEE
T ss_pred             ---------ccccccceEEEEEEccccchHHHHHHHHHHhcccCCeEEEEEECCccCCCCCHHHHHHHHHHHHHcCCEEE
Confidence                     111235899999988754 445679999999999999998632     1222333322    333457777


Q ss_pred             eeeecCCE----EEEEEEE
Q 026513          216 LVSEMDDW----TCVSGKK  230 (237)
Q Consensus       216 ~~~~~~~w----~~~~~~~  230 (237)
                      +..+...|    ..++++|
T Consensus       208 e~i~L~p~~~~H~~vv~rK  226 (227)
T d1g8aa_         208 ERLNLEPYEKDHALFVVRK  226 (227)
T ss_dssp             EEEECTTTSSSEEEEEEEC
T ss_pred             EEEcCCCCCCceEEEEEEe
Confidence            66554333    5555555

>d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Methyltransferase 10 domain
domain: Methyltransferase 10 domain containing protein METT10D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=1.4e-13  Score=112.50  Aligned_cols=132  Identities=13%  Similarity=0.059  Sum_probs=90.4

Q ss_pred             CCCeEEEEcCcchHHHHHHHH-hCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccccc
Q 026513           70 GGELFLDYGTGSGILGIAAIK-FGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDL  148 (237)
Q Consensus        70 ~~~~vLDlG~G~G~~~~~la~-~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~  148 (237)
                      +..++||+|||+|.+++.++. .+..+++|+|+|+.+++.|++|+..+++.+   ++.+...+..+...+.         
T Consensus        61 ~~~~~LDiGtGsg~I~~~l~~~~~~~~~~~~Di~~~al~~A~~N~~~n~l~~---~~~~~~~~~~~~~~~~---------  128 (250)
T d2h00a1          61 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSD---LIKVVKVPQKTLLMDA---------  128 (250)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTT---TEEEEECCTTCSSTTT---------
T ss_pred             ccceEEEeCCCchHHHHHHHHhCCCccccceecCHHHHHHHHHHHHHhCCCc---ceeeeeeccHHhhhhh---------
Confidence            345899999999999998885 467889999999999999999999999987   4666665543211110         


Q ss_pred             ccccccCCCCCCceeEEEEeCChHH--------------------------------------HHHHHHHHhHhcCCCeE
Q 026513          149 SSHKIRGISQTEKYDVVIANILLNP--------------------------------------LLQLADHIVSYAKPGAV  190 (237)
Q Consensus       149 ~~~~~~~~~~~~~fD~I~~n~~~~~--------------------------------------~~~~l~~~~~~L~~gG~  190 (237)
                          + .....++||+|+||||+..                                      +.++++....+++..|+
T Consensus       129 ----~-~~~~~~~fD~ivsNPPY~~~~e~~~~~~~~k~~~~~p~~~~~~~~~el~~~gGe~~F~~~ii~es~~~~~~~g~  203 (250)
T d2h00a1         129 ----L-KEESEIIYDFCMCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFVKRIIHDSLQLKKRLRW  203 (250)
T ss_dssp             ----S-TTCCSCCBSEEEECCCCC-------------------------CTTTTHHHHTHHHHHHHHHHHHHHHGGGBSC
T ss_pred             ----h-hhcccCceeEEEecCcccccchhhhccccccccccCchhhcCccccccccccchhhHHHHHHHHHHHHhhcCcE
Confidence                0 0112468999999999531                                      23445666677888887


Q ss_pred             EEEeccCCCCHHHHHHHHhhc-cccceee
Q 026513          191 VGISGILSEQLPHIINRYSEF-LEDILVS  218 (237)
Q Consensus       191 liis~~~~~~~~~~~~~~~~~-~~~~~~~  218 (237)
                      +..---..++..++...+... +..+.+.
T Consensus       204 ~t~~ig~~~~l~~i~~~L~~~g~~~i~~i  232 (250)
T d2h00a1         204 YSCMLGKKCSLAPLKEELRIQGVPKVTYT  232 (250)
T ss_dssp             EEEEESSTTSHHHHHHHHHHTTCSEEEEE
T ss_pred             EEEEecchhhHHHHHHHHHHcCCCeEEEE
Confidence            743211345566777777654 4444433

>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

Probab=99.52  E-value=3.5e-14  Score=116.17  Aligned_cols=102  Identities=16%  Similarity=0.204  Sum_probs=84.8

Q ss_pred             cCCCeEEEEcCcchHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccc
Q 026513           69 KGGELFLDYGTGSGILGIAAIKF-GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVED  147 (237)
Q Consensus        69 ~~~~~vLDlG~G~G~~~~~la~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  147 (237)
                      .+..+|||+|||+|.++..+++. +..+++++|+ +.+++.+++++...++..   ++.++.+|+++             
T Consensus        79 ~~~~~VLDvGcG~G~~~~~la~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~---rv~~~~~D~~~-------------  141 (253)
T d1tw3a2          79 TNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEGLSD---RVDVVEGDFFE-------------  141 (253)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTTCTT---TEEEEECCTTS-------------
T ss_pred             ccCCEEEEeCCCCCHHHHHHHHhcceeEEEEccC-HHHHHHHHHHHHHhhccc---chhhccccchh-------------
Confidence            45679999999999999999865 6778999998 668999999999888765   58899999763             


Q ss_pred             cccccccCCCCCCceeEEEEeCChHHH-----HHHHHHHhHhcCCCeEEEEecc
Q 026513          148 LSSHKIRGISQTEKYDVVIANILLNPL-----LQLADHIVSYAKPGAVVGISGI  196 (237)
Q Consensus       148 ~~~~~~~~~~~~~~fD~I~~n~~~~~~-----~~~l~~~~~~L~~gG~liis~~  196 (237)
                              .. ..+||+|++...++++     .++++++.+.|+|||+|+|.+.
T Consensus       142 --------~~-~~~~D~v~~~~vlh~~~d~~~~~~L~~~~~~LkPGG~l~i~e~  186 (253)
T d1tw3a2         142 --------PL-PRKADAIILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHER  186 (253)
T ss_dssp             --------CC-SSCEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred             --------hc-ccchhheeeccccccCCchhhHHHHHHHHHhcCCCcEEEEEec
Confidence                    11 3579999999888754     3679999999999999998644

>d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.52  E-value=7.8e-14  Score=110.59  Aligned_cols=104  Identities=12%  Similarity=0.106  Sum_probs=86.2

Q ss_pred             CCCeEEEEcCcchHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccccc
Q 026513           70 GGELFLDYGTGSGILGIAAIKF-GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDL  148 (237)
Q Consensus        70 ~~~~vLDlG~G~G~~~~~la~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~  148 (237)
                      .+..|||||||+|.++..+|+. +...++|+|+++.++..|.+++...+++|    +.++.+|+.+              
T Consensus        31 ~~plvLdIGcG~G~~~~~lA~~~p~~~~iGid~~~~~v~~a~~~~~~~~l~N----i~~~~~da~~--------------   92 (204)
T d1yzha1          31 DNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPN----IKLLWVDGSD--------------   92 (204)
T ss_dssp             CCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSS----EEEEECCSSC--------------
T ss_pred             CCCeEEEEeccCCHHHHHHHHHCCCCceEEEeccHHHHHHHHHhhhhhcccc----ceeeecCHHH--------------
Confidence            4457999999999999999864 78889999999999999999999999987    8899999763              


Q ss_pred             ccccccCCCCCCceeEEEEeCCh------HH-----HHHHHHHHhHhcCCCeEEEEec
Q 026513          149 SSHKIRGISQTEKYDVVIANILL------NP-----LLQLADHIVSYAKPGAVVGISG  195 (237)
Q Consensus       149 ~~~~~~~~~~~~~fD~I~~n~~~------~~-----~~~~l~~~~~~L~~gG~liis~  195 (237)
                          +....+..++|.|+++.|-      |+     ...+++.+.+.|+|||.|++.+
T Consensus        93 ----l~~~~~~~~~~~i~i~fPdPw~K~~h~krRl~~~~~l~~~~~~LkpgG~l~i~T  146 (204)
T d1yzha1          93 ----LTDYFEDGEIDRLYLNFSDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKT  146 (204)
T ss_dssp             ----GGGTSCTTCCSEEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEE
T ss_pred             ----HhhhccCCceehhcccccccccchhhhhhhhhHHHHHHHHHHhCCCCcEEEEEE
Confidence                1133456789999998763      11     2478999999999999999863

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.52  E-value=3.7e-14  Score=120.33  Aligned_cols=102  Identities=24%  Similarity=0.309  Sum_probs=83.9

Q ss_pred             ccCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccc
Q 026513           68 IKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVED  147 (237)
Q Consensus        68 ~~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  147 (237)
                      ..+|++|||+|||+|.+++.+++.|+.+|+|+|.|+ +++.|+++...++...   ++.++.+|..+.            
T Consensus        36 ~~~~~~VLDlGcGtG~ls~~aa~~Ga~~V~avd~s~-~~~~a~~~~~~~~~~~---~i~~i~~~~~~l------------   99 (328)
T d1g6q1_          36 LFKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMSS-IIEMAKELVELNGFSD---KITLLRGKLEDV------------   99 (328)
T ss_dssp             HHTTCEEEEETCTTSHHHHHHHHTCCSEEEEEESST-HHHHHHHHHHHTTCTT---TEEEEESCTTTS------------
T ss_pred             cCCcCEEEEeCCCCCHHHHHHHHhCCCEEEEEeCCH-HHHHHHHHHHHhCccc---cceEEEeehhhc------------
Confidence            357899999999999999999999999999999997 6788999999988876   588888987631            


Q ss_pred             cccccccCCCCCCceeEEEEeCChH------HHHHHHHHHhHhcCCCeEEEE
Q 026513          148 LSSHKIRGISQTEKYDVVIANILLN------PLLQLADHIVSYAKPGAVVGI  193 (237)
Q Consensus       148 ~~~~~~~~~~~~~~fD~I~~n~~~~------~~~~~l~~~~~~L~~gG~lii  193 (237)
                              ..++.+||+|++....+      ....++....++|||||.++-
T Consensus       100 --------~~~~~~~D~i~se~~~~~~~~e~~~~~~~~a~~r~LkpgG~iiP  143 (328)
T d1g6q1_         100 --------HLPFPKVDIIISEWMGYFLLYESMMDTVLYARDHYLVEGGLIFP  143 (328)
T ss_dssp             --------CCSSSCEEEEEECCCBTTBSTTCCHHHHHHHHHHHEEEEEEEES
T ss_pred             --------cCcccceeEEEEEecceeeccchhHHHHHHHHHhccCCCeEEEe
Confidence                    12357999999977642      235677888899999999863

>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase RlmA
domain: rRNA methyltransferase RlmA
species: Escherichia coli [TaxId: 562]

Probab=99.51  E-value=2.7e-14  Score=117.91  Aligned_cols=107  Identities=18%  Similarity=0.154  Sum_probs=82.6

Q ss_pred             ccCCCeEEEEcCcchHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccc
Q 026513           68 IKGGELFLDYGTGSGILGIAAIKF-GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVE  146 (237)
Q Consensus        68 ~~~~~~vLDlG~G~G~~~~~la~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  146 (237)
                      ..++.+|||+|||+|.++..+++. +..+++|+|+|+.+++.|+++.     .    ++.+.++|..+.           
T Consensus        82 ~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~~giD~s~~~~~~a~~~~-----~----~~~~~~~d~~~l-----------  141 (268)
T d1p91a_          82 DDKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRY-----P----QVTFCVASSHRL-----------  141 (268)
T ss_dssp             CTTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHC-----T----TSEEEECCTTSC-----------
T ss_pred             CCCCCEEEEeCCCCcHHHHHHHHHCCCCEEEEecchHhhhhhhhccc-----c----cccceeeehhhc-----------
Confidence            356789999999999999999876 4568999999999999988652     2    266778887632           


Q ss_pred             ccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEeccCCCCHHHHHHH
Q 026513          147 DLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILSEQLPHIINR  207 (237)
Q Consensus       147 ~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~~~~~~~~~~~~~  207 (237)
                               ..++++||+|++....+++    +++.++|||||+++++........++...
T Consensus       142 ---------~~~~~sfD~v~~~~~~~~~----~e~~rvLkpgG~l~~~~p~~~~l~el~~~  189 (268)
T d1p91a_         142 ---------PFSDTSMDAIIRIYAPCKA----EELARVVKPGGWVITATPGPRHLMELKGL  189 (268)
T ss_dssp             ---------SBCTTCEEEEEEESCCCCH----HHHHHHEEEEEEEEEEEECTTTTHHHHTT
T ss_pred             ---------cCCCCCEEEEeecCCHHHH----HHHHHHhCCCcEEEEEeeCCcchHHHHHH
Confidence                     2346899999998766653    66889999999999986655554554443

>d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein Ta1320
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.51  E-value=2.8e-14  Score=112.38  Aligned_cols=72  Identities=35%  Similarity=0.540  Sum_probs=60.8

Q ss_pred             CCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccccc
Q 026513           70 GGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDLS  149 (237)
Q Consensus        70 ~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~  149 (237)
                      .|++|||+|||+|.+++.++..|..+|+|+|+|+.+++.|++|+.         .+.++++|+.+               
T Consensus        48 ~Gk~VLDlGcGtG~l~i~a~~~ga~~V~~vDid~~a~~~ar~N~~---------~~~~~~~D~~~---------------  103 (197)
T d1ne2a_          48 GGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNCG---------GVNFMVADVSE---------------  103 (197)
T ss_dssp             BTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHHHHHHHCT---------TSEEEECCGGG---------------
T ss_pred             CCCEEEEeCCCCcHHHHHHHHcCCCcccccccCHHHHHHHHHccc---------cccEEEEehhh---------------
Confidence            588999999999999999999998999999999999999998853         25677888752               


Q ss_pred             cccccCCCCCCceeEEEEeCChHH
Q 026513          150 SHKIRGISQTEKYDVVIANILLNP  173 (237)
Q Consensus       150 ~~~~~~~~~~~~fD~I~~n~~~~~  173 (237)
                            +  .++||+|++|||+..
T Consensus       104 ------l--~~~fD~Vi~NPPfg~  119 (197)
T d1ne2a_         104 ------I--SGKYDTWIMNPPFGS  119 (197)
T ss_dssp             ------C--CCCEEEEEECCCC--
T ss_pred             ------c--CCcceEEEeCcccch
Confidence                  2  468999999999753

>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=99.50  E-value=3e-14  Score=113.76  Aligned_cols=123  Identities=17%  Similarity=0.216  Sum_probs=92.9

Q ss_pred             eeEEeCcccccCCCCchhH-HHHHHHHHhhccCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcC
Q 026513           39 TNIILNPGLAFGSGEHATT-KLCLLLLRRLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNN  117 (237)
Q Consensus        39 ~~~~~~~~~~f~~g~~~~~-~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~  117 (237)
                      ..+.+..+....   .|.. ..+++.+.  +++|.+|||+|||+|+.+..+++.-..+|+++|.++..++.|++++...+
T Consensus        51 ~~l~i~~g~~is---~P~~~a~ml~~L~--l~~g~~VLeIGsGsGY~taila~l~g~~V~~ie~~~~l~~~a~~~l~~~g  125 (215)
T d1jg1a_          51 EPLPIPAGQTVS---APHMVAIMLEIAN--LKPGMNILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLERAG  125 (215)
T ss_dssp             SCEECSTTCEEC---CHHHHHHHHHHHT--CCTTCCEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHHHTT
T ss_pred             CCcccchhhhhh---hhhhHHHHHHhhc--cCccceEEEecCCCChhHHHHHHhhCceeEEEeccHHHHHHHHHHHHHcC
Confidence            345555543322   2332 44444443  68899999999999999999997633669999999999999999999999


Q ss_pred             CCCCcceEEeccCccccccccccccccccccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEE
Q 026513          118 IGPKKMKLHLVPDRTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGI  193 (237)
Q Consensus       118 ~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~lii  193 (237)
                      +.+    +.++++|..+.                    ....++||.|++........   ..+...|+|||+|++
T Consensus       126 ~~n----v~~~~gd~~~g--------------------~~~~~pfD~Iiv~~a~~~ip---~~l~~qL~~gGrLv~  174 (215)
T d1jg1a_         126 VKN----VHVILGDGSKG--------------------FPPKAPYDVIIVTAGAPKIP---EPLIEQLKIGGKLII  174 (215)
T ss_dssp             CCS----EEEEESCGGGC--------------------CGGGCCEEEEEECSBBSSCC---HHHHHTEEEEEEEEE
T ss_pred             Cce----eEEEECccccC--------------------CcccCcceeEEeecccccCC---HHHHHhcCCCCEEEE
Confidence            886    89999998742                    23367999999988665433   346778999999987

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.50  E-value=3.7e-14  Score=119.74  Aligned_cols=102  Identities=20%  Similarity=0.247  Sum_probs=83.9

Q ss_pred             ccCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccc
Q 026513           68 IKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVED  147 (237)
Q Consensus        68 ~~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  147 (237)
                      +.+|++|||+|||+|.+++.+++.|+.+|+|+|.|+. +..+++++..+++.+   ++.++++|..+.            
T Consensus        31 ~~~~~~VLDiGcG~G~ls~~aa~~Ga~~V~avd~s~~-~~~a~~~~~~n~~~~---~v~~~~~~~~~~------------   94 (316)
T d1oria_          31 LFKDKVVLDVGSGTGILCMFAAKAGARKVIGIECSSI-SDYAVKIVKANKLDH---VVTIIKGKVEEV------------   94 (316)
T ss_dssp             HHTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECSTT-HHHHHHHHHHTTCTT---TEEEEESCTTTC------------
T ss_pred             cCCcCEEEEEecCCcHHHHHHHHhCCCEEEEEcCcHH-HhhhhhHHHHhCCcc---ccceEeccHHHc------------
Confidence            4578999999999999999999999999999999985 577888888888876   588889987631            


Q ss_pred             cccccccCCCCCCceeEEEEeCChH------HHHHHHHHHhHhcCCCeEEEE
Q 026513          148 LSSHKIRGISQTEKYDVVIANILLN------PLLQLADHIVSYAKPGAVVGI  193 (237)
Q Consensus       148 ~~~~~~~~~~~~~~fD~I~~n~~~~------~~~~~l~~~~~~L~~gG~lii  193 (237)
                              ..+..+||+|++....+      .+..++..+.++|+|||.++-
T Consensus        95 --------~~~~~~~D~ivs~~~~~~l~~e~~~~~~l~~~~r~Lkp~G~iiP  138 (316)
T d1oria_          95 --------ELPVEKVDIIISEWMGYCLFYESMLNTVLHARDKWLAPDGLIFP  138 (316)
T ss_dssp             --------CCSSSCEEEEEECCCBBTBTBTCCHHHHHHHHHHHEEEEEEEES
T ss_pred             --------ccccceeEEEeeeeeeeeeccHHHHHHHHHHHHhcCCCCeEEEe
Confidence                    12357899999976642      346788899999999999974

>d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=99.50  E-value=2.5e-14  Score=114.98  Aligned_cols=97  Identities=18%  Similarity=0.233  Sum_probs=78.4

Q ss_pred             ccCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccc
Q 026513           68 IKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVED  147 (237)
Q Consensus        68 ~~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  147 (237)
                      +++|.+|||+|||+|+++..+++. ..+|+++|+++.+++.|++++...  .+    +.++.+|...             
T Consensus        68 l~~g~~VLdIG~GsGy~ta~La~l-~~~V~aiE~~~~~~~~A~~~~~~~--~n----v~~~~~d~~~-------------  127 (224)
T d1vbfa_          68 LHKGQKVLEIGTGIGYYTALIAEI-VDKVVSVEINEKMYNYASKLLSYY--NN----IKLILGDGTL-------------  127 (224)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHH-SSEEEEEESCHHHHHHHHHHHTTC--SS----EEEEESCGGG-------------
T ss_pred             hcccceEEEecCCCCHHHHHHHHH-hcccccccccHHHHHHHHHHHhcc--cc----cccccCchhh-------------
Confidence            688999999999999999999988 567999999999999999886643  33    8888898763             


Q ss_pred             cccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEe
Q 026513          148 LSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGIS  194 (237)
Q Consensus       148 ~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis  194 (237)
                             .+...++||+|+++.....   +.+.+.+.|+|||+|++-
T Consensus       128 -------g~~~~~pfD~Iiv~~a~~~---ip~~l~~qLk~GGrLV~p  164 (224)
T d1vbfa_         128 -------GYEEEKPYDRVVVWATAPT---LLCKPYEQLKEGGIMILP  164 (224)
T ss_dssp             -------CCGGGCCEEEEEESSBBSS---CCHHHHHTEEEEEEEEEE
T ss_pred             -------cchhhhhHHHHHhhcchhh---hhHHHHHhcCCCCEEEEE
Confidence                   2223578999999876543   335577889999999883

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=6.8e-14  Score=118.24  Aligned_cols=138  Identities=17%  Similarity=0.171  Sum_probs=95.7

Q ss_pred             ccCCCeEEEEcCcchHHHHHHHHh--CCCeEEEEeCCHHHHHHHHHHHHHcCC-------CCCcceEEeccCcccccccc
Q 026513           68 IKGGELFLDYGTGSGILGIAAIKF--GAAMSVGADIDPQAIKSAHQNAALNNI-------GPKKMKLHLVPDRTFTASMN  138 (237)
Q Consensus        68 ~~~~~~vLDlG~G~G~~~~~la~~--~~~~v~~vD~s~~~i~~a~~~~~~~~~-------~~~~~~v~~~~~d~~~~~~~  138 (237)
                      +.||.+|||+|||+|.++..+++.  +..+|+++|+++++++.|++|++..+.       ....-.+.+..+|+.+..  
T Consensus        96 i~pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~nv~~~~~di~~~~--  173 (324)
T d2b25a1          96 INPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGAT--  173 (324)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCCC--
T ss_pred             CCCCCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhccccceeEEecchhhcc--
Confidence            689999999999999999999975  467899999999999999999875321       111113777788865311  


Q ss_pred             ccccccccccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEeccCCCCHHHHHHHHhh---ccccc
Q 026513          139 ERVDGVVEDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILSEQLPHIINRYSE---FLEDI  215 (237)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~~~~~~~~~~~~~~~~---~~~~~  215 (237)
                                      ...+...||.||.+.|-.+  .++..+.++|||||++++-.-..++...+...++.   .|..+
T Consensus       174 ----------------~~~~~~~fD~V~LD~p~P~--~~l~~~~~~LKpGG~lv~~~P~i~Qv~~~~~~l~~~~~~f~~i  235 (324)
T d2b25a1         174 ----------------EDIKSLTFDAVALDMLNPH--VTLPVFYPHLKHGGVCAVYVVNITQVIELLDGIRTCELALSCE  235 (324)
T ss_dssp             -----------------------EEEEEECSSSTT--TTHHHHGGGEEEEEEEEEEESSHHHHHHHHHHHHHHTCCEEEE
T ss_pred             ----------------cccCCCCcceEeecCcCHH--HHHHHHHHhccCCCEEEEEeCCHHHHHHHHHHHHHcCCCceee
Confidence                            1112468999999876432  46889999999999998854344556666666652   26666


Q ss_pred             eeeec--CCEEE
Q 026513          216 LVSEM--DDWTC  225 (237)
Q Consensus       216 ~~~~~--~~w~~  225 (237)
                      ++.+.  -+|..
T Consensus       236 ~~~E~~~R~w~v  247 (324)
T d2b25a1         236 KISEVIVRDWLV  247 (324)
T ss_dssp             EEECCCCCCEEE
T ss_pred             EEEEEEeeeeEE
Confidence            65543  34654

>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.50  E-value=1.5e-13  Score=110.98  Aligned_cols=132  Identities=12%  Similarity=0.102  Sum_probs=89.2

Q ss_pred             ccCCCeEEEEcCcchHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccc
Q 026513           68 IKGGELFLDYGTGSGILGIAAIKF-GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVE  146 (237)
Q Consensus        68 ~~~~~~vLDlG~G~G~~~~~la~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  146 (237)
                      +++|.+|||+|||+|+.+..++.. +..+|+|+|+|+.+++.+++.+...+  +    +.++.+|...+.          
T Consensus        72 ikpG~~VLDlGcGsG~~~~~la~~~~~g~V~aVDiS~~~i~~a~~~a~~~~--n----i~~i~~d~~~~~----------  135 (230)
T d1g8sa_          72 IKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERE--N----IIPILGDANKPQ----------  135 (230)
T ss_dssp             CCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCT--T----EEEEECCTTCGG----------
T ss_pred             CCCCCEEEEeCEEcCHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHhhhc--c----cceEEEeeccCc----------
Confidence            578999999999999999999976 56789999999999999998876543  2    555666665321          


Q ss_pred             ccccccccCCC-CCCceeEEEEeCC-hHHHHHHHHHHhHhcCCCeEEEEeccC-----CCCH----HHHHHHHhh-cccc
Q 026513          147 DLSSHKIRGIS-QTEKYDVVIANIL-LNPLLQLADHIVSYAKPGAVVGISGIL-----SEQL----PHIINRYSE-FLED  214 (237)
Q Consensus       147 ~~~~~~~~~~~-~~~~fD~I~~n~~-~~~~~~~l~~~~~~L~~gG~liis~~~-----~~~~----~~~~~~~~~-~~~~  214 (237)
                              ... ....+|+++++.. ......++.++.+.|||||.++++...     ....    .+..+.++. .|+.
T Consensus       136 --------~~~~~~~~v~~i~~~~~~~~~~~~~l~~~~r~LKpgG~~~i~~k~~~~d~~~~~~~~~~e~~~~L~~aGF~i  207 (230)
T d1g8sa_         136 --------EYANIVEKVDVIYEDVAQPNQAEILIKNAKWFLKKGGYGMIAIKARSIDVTKDPKEIFKEQKEILEAGGFKI  207 (230)
T ss_dssp             --------GGTTTCCCEEEEEECCCSTTHHHHHHHHHHHHEEEEEEEEEEEEGGGTCSSSCHHHHHHHHHHHHHHHTEEE
T ss_pred             --------ccccccceeEEeeccccchHHHHHHHHHHHHhcccCceEEEEeeccccCCCCCHHHHHHHHHHHHHHcCCEE
Confidence                    111 1124555555443 233456789999999999999986321     1122    233344443 3777


Q ss_pred             ceeeecCCE
Q 026513          215 ILVSEMDDW  223 (237)
Q Consensus       215 ~~~~~~~~w  223 (237)
                      ++..+...|
T Consensus       208 ve~idL~py  216 (230)
T d1g8sa_         208 VDEVDIEPF  216 (230)
T ss_dssp             EEEEECTTT
T ss_pred             EEEecCCCC
Confidence            777665444

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=1.7e-13  Score=115.29  Aligned_cols=102  Identities=26%  Similarity=0.280  Sum_probs=81.1

Q ss_pred             ccCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccc
Q 026513           68 IKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVED  147 (237)
Q Consensus        68 ~~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  147 (237)
                      ..+|++|||+|||+|.+++.+++.|+.+|+|+|.|+.+.. +++....++...   ++.++++|..+.            
T Consensus        33 ~~~~~~VLDiGcG~G~lsl~aa~~Ga~~V~aid~s~~~~~-a~~~~~~~~~~~---~i~~~~~~~~~l------------   96 (311)
T d2fyta1          33 IFKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSEILYQ-AMDIIRLNKLED---TITLIKGKIEEV------------   96 (311)
T ss_dssp             GTTTCEEEEETCTTSHHHHHHHHTTCSEEEEEESSTHHHH-HHHHHHHTTCTT---TEEEEESCTTTS------------
T ss_pred             cCCcCEEEEECCCCCHHHHHHHHcCCCEEEEEeCHHHHHH-HHHHHHHhCCCc---cceEEEeeHHHh------------
Confidence            3578999999999999999999999999999999998754 666666676655   488888887631            


Q ss_pred             cccccccCCCCCCceeEEEEeCChH------HHHHHHHHHhHhcCCCeEEEE
Q 026513          148 LSSHKIRGISQTEKYDVVIANILLN------PLLQLADHIVSYAKPGAVVGI  193 (237)
Q Consensus       148 ~~~~~~~~~~~~~~fD~I~~n~~~~------~~~~~l~~~~~~L~~gG~lii  193 (237)
                              ..+..+||+|++....+      ....++....++|+|||.++.
T Consensus        97 --------~~~~~~~D~Ivse~~~~~~~~e~~~~~~~~a~~~~Lkp~G~iip  140 (311)
T d2fyta1          97 --------HLPVEKVDVIISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVYP  140 (311)
T ss_dssp             --------CCSCSCEEEEEECCCBTTBTTTCHHHHHHHHHHHHEEEEEEEES
T ss_pred             --------cCccccceEEEEeeeeeecccccccHHHHHHHHhcCCCCcEEec
Confidence                    12357999999977643      345677778889999999985

>d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Possible histamine N-methyltransferase TM1293
species: Thermotoga maritima [TaxId: 2336]

Probab=99.49  E-value=7.4e-14  Score=110.38  Aligned_cols=92  Identities=10%  Similarity=0.143  Sum_probs=73.7

Q ss_pred             cCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccccc
Q 026513           69 KGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDL  148 (237)
Q Consensus        69 ~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~  148 (237)
                      .++.+|||+|||+|.++..++     +++|+|+|+.+++.|+++    +       +.++++|..+.             
T Consensus        35 ~~~~~vLDiGcG~G~~~~~~~-----~~~giD~s~~~~~~a~~~----~-------~~~~~~d~~~l-------------   85 (208)
T d1vlma_          35 LPEGRGVEIGVGTGRFAVPLK-----IKIGVEPSERMAEIARKR----G-------VFVLKGTAENL-------------   85 (208)
T ss_dssp             CCSSCEEEETCTTSTTHHHHT-----CCEEEESCHHHHHHHHHT----T-------CEEEECBTTBC-------------
T ss_pred             CCCCeEEEECCCCcccccccc-----eEEEEeCChhhccccccc----c-------ccccccccccc-------------
Confidence            456689999999998877663     468999999999998864    2       66778887531             


Q ss_pred             ccccccCCCCCCceeEEEEeCChHHH---HHHHHHHhHhcCCCeEEEEecc
Q 026513          149 SSHKIRGISQTEKYDVVIANILLNPL---LQLADHIVSYAKPGAVVGISGI  196 (237)
Q Consensus       149 ~~~~~~~~~~~~~fD~I~~n~~~~~~---~~~l~~~~~~L~~gG~liis~~  196 (237)
                             ..++.+||+|+|..+++++   ..+++++.++|+|||.+++...
T Consensus        86 -------~~~~~~fD~I~~~~~l~h~~d~~~~l~~~~~~L~pgG~l~i~~~  129 (208)
T d1vlma_          86 -------PLKDESFDFALMVTTICFVDDPERALKEAYRILKKGGYLIVGIV  129 (208)
T ss_dssp             -------CSCTTCEEEEEEESCGGGSSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             -------ccccccccccccccccccccccccchhhhhhcCCCCceEEEEec
Confidence                   2236799999999998775   4679999999999999998643

>d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase HI0767
species: Haemophilus influenzae [TaxId: 727]

Probab=99.48  E-value=1.5e-13  Score=107.18  Aligned_cols=124  Identities=16%  Similarity=0.148  Sum_probs=90.1

Q ss_pred             CchhHHHHHHHHHhhc---cCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEecc
Q 026513           53 EHATTKLCLLLLRRLI---KGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVP  129 (237)
Q Consensus        53 ~~~~~~~~~~~l~~~~---~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~  129 (237)
                      .+|++..+.+.+-..+   -.+.+|||++||+|.+++.++.+|+.+|+.+|.+..+++..++|+...++.+.  ...+..
T Consensus        23 ~RPt~~~vrealFn~l~~~~~~~~vLDlFaGsG~~glEalSRGA~~v~fVE~~~~a~~~ik~Ni~~l~~~~~--~~~~~~  100 (183)
T d2ifta1          23 LRPTGDRVKETLFNWLMPYIHQSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQTLKCSSE--QAEVIN  100 (183)
T ss_dssp             -----CHHHHHHHHHHHHHHTTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCTT--TEEEEC
T ss_pred             cCcCcHHHHHHHHHHhhhhcccceEeecccCccceeeeeeeecceeeEEeecccchhhhHhhHHhhhccccc--cccccc
Confidence            4677766666665543   36789999999999999999999999999999999999999999998876543  244556


Q ss_pred             CccccccccccccccccccccccccCCCCCCceeEEEEeCChH--HHHHHHHHHhH--hcCCCeEEEEec
Q 026513          130 DRTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLN--PLLQLADHIVS--YAKPGAVVGISG  195 (237)
Q Consensus       130 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~~--~~~~~l~~~~~--~L~~gG~liis~  195 (237)
                      .|..+..                 .......+||+|++|||+.  .....+..+..  +|+++|.+++..
T Consensus       101 ~d~~~~l-----------------~~~~~~~~fDlIFlDPPY~~~~~~~~l~~l~~~~~L~~~~liiiE~  153 (183)
T d2ifta1         101 QSSLDFL-----------------KQPQNQPHFDVVFLDPPFHFNLAEQAISLLCENNWLKPNALIYVET  153 (183)
T ss_dssp             SCHHHHT-----------------TSCCSSCCEEEEEECCCSSSCHHHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred             ccccccc-----------------cccccCCcccEEEechhHhhhhHHHHHHHHHHhCCcCCCcEEEEEe
Confidence            6654211                 1122245799999999973  34556666654  799999999953

>d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Phenylethanolamine N-methyltransferase, PNMTase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=2.9e-13  Score=111.28  Aligned_cols=133  Identities=12%  Similarity=0.091  Sum_probs=88.7

Q ss_pred             cCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcc-------------------------
Q 026513           69 KGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKM-------------------------  123 (237)
Q Consensus        69 ~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~-------------------------  123 (237)
                      ..|.++||+|||+|.+++..+.....+|+|+|+|+.+++.+++.+...+....+.                         
T Consensus        53 ~~g~~vLDiGcG~g~~~~~~~~~~~~~v~~~D~S~~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  132 (263)
T d2g72a1          53 VSGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRA  132 (263)
T ss_dssp             SCCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHH
T ss_pred             CCCcEEEEeccCCCHHHHHHhcccCCeEEEEeCCHHHHHHHHHHHhcCcccccchhhhhhhhhhccccchhhhhHHHhhh
Confidence            3578999999999988766555556789999999999999998876544321110                         


Q ss_pred             -eEEeccCcccccccccccccccccccccccc-CCCCCCceeEEEEeCChHHH-------HHHHHHHhHhcCCCeEEEEe
Q 026513          124 -KLHLVPDRTFTASMNERVDGVVEDLSSHKIR-GISQTEKYDVVIANILLNPL-------LQLADHIVSYAKPGAVVGIS  194 (237)
Q Consensus       124 -~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~fD~I~~n~~~~~~-------~~~l~~~~~~L~~gG~liis  194 (237)
                       ...+...|+....               ... .....++||+|++...++++       ..+++++.++|||||+|++.
T Consensus       133 ~~~~~~~~Dv~~~~---------------~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~~~~~LkPGG~li~~  197 (263)
T d2g72a1         133 RVKRVLPIDVHQPQ---------------PLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLI  197 (263)
T ss_dssp             HEEEEECCCTTSSS---------------TTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred             hhhccccccccCCC---------------ccccCCcCcCccCeeeeHHHHHHHccCHHHHHHHHHHHHHHcCCCCEEEEe
Confidence             0112223332211               011 11224589999999887664       56799999999999999986


Q ss_pred             ccCC---------------CCHHHHHHHHhhc-cccce
Q 026513          195 GILS---------------EQLPHIINRYSEF-LEDIL  216 (237)
Q Consensus       195 ~~~~---------------~~~~~~~~~~~~~-~~~~~  216 (237)
                      +...               -..+++.+.+... |+.+.
T Consensus       198 ~~~~~~~~~~~~~~~~~~~~t~e~v~~~l~~aGf~v~~  235 (263)
T d2g72a1         198 GALEESWYLAGEARLTVVPVSEEEVREALVRSGYKVRD  235 (263)
T ss_dssp             EEESCCEEEETTEEEECCCCCHHHHHHHHHHTTEEEEE
T ss_pred             cccCCcccccCCcccccCCCCHHHHHHHHHHCCCeEEE
Confidence            4421               2456777777653 65543

>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Aclacinomycin-10-hydroxylase RdmB
species: Streptomyces purpurascens [TaxId: 1924]

Probab=99.43  E-value=4.9e-13  Score=109.48  Aligned_cols=102  Identities=17%  Similarity=0.139  Sum_probs=84.8

Q ss_pred             cCCCeEEEEcCcchHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccc
Q 026513           69 KGGELFLDYGTGSGILGIAAIKF-GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVED  147 (237)
Q Consensus        69 ~~~~~vLDlG~G~G~~~~~la~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  147 (237)
                      .+..+|||||||+|.++..+++. +..+++++|+ +.+++.+++++...++.+   ++.++.+|.++             
T Consensus        80 ~~~~~vlDvG~G~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~~~~~~~~~~---ri~~~~~d~~~-------------  142 (256)
T d1qzza2          80 SAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGLAD---RVTVAEGDFFK-------------  142 (256)
T ss_dssp             TTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTT---TEEEEECCTTS-------------
T ss_pred             ccCCEEEEECCCCCHHHHHHHHhhcCcEEEEecC-hHHHHHHHHHHhhcCCcc---eeeeeeeeccc-------------
Confidence            45679999999999999999864 6778999998 779999999999888776   58888888763             


Q ss_pred             cccccccCCCCCCceeEEEEeCChHHH-----HHHHHHHhHhcCCCeEEEEecc
Q 026513          148 LSSHKIRGISQTEKYDVVIANILLNPL-----LQLADHIVSYAKPGAVVGISGI  196 (237)
Q Consensus       148 ~~~~~~~~~~~~~~fD~I~~n~~~~~~-----~~~l~~~~~~L~~gG~liis~~  196 (237)
                              .. ..+||+|++...+|..     .++++++.+.|+|||+++|.+.
T Consensus       143 --------~~-p~~~D~v~~~~vLh~~~d~~~~~lL~~i~~~LkpgG~llI~d~  187 (256)
T d1qzza2         143 --------PL-PVTADVVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDR  187 (256)
T ss_dssp             --------CC-SCCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             --------cc-cccchhhhccccccccCcHHHHHHHHHHHhhcCCcceeEEEEe
Confidence                    11 3469999998888654     4679999999999999998754

>d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.42  E-value=1.8e-13  Score=109.91  Aligned_cols=110  Identities=19%  Similarity=0.322  Sum_probs=83.6

Q ss_pred             HHHHHHHHhhccCCCeEEEEcCcchHHHHHHHHh----C---CCeEEEEeCCHHHHHHHHHHHHHc-----CCCCCcceE
Q 026513           58 KLCLLLLRRLIKGGELFLDYGTGSGILGIAAIKF----G---AAMSVGADIDPQAIKSAHQNAALN-----NIGPKKMKL  125 (237)
Q Consensus        58 ~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~la~~----~---~~~v~~vD~s~~~i~~a~~~~~~~-----~~~~~~~~v  125 (237)
                      ..+++.+...+++|.+|||+|||+|+++..+++.    |   ..+|+++|+++..++.|++++...     ++.+    +
T Consensus        68 a~~l~~L~~~l~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~~n----v  143 (223)
T d1r18a_          68 AFALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQ----L  143 (223)
T ss_dssp             HHHHHHTTTTCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTS----E
T ss_pred             HHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcCccE----E
Confidence            4455555444688999999999999999888864    2   247999999999999999986543     3333    8


Q ss_pred             EeccCccccccccccccccccccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEe
Q 026513          126 HLVPDRTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGIS  194 (237)
Q Consensus       126 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis  194 (237)
                      .+..+|..+.                    ....++||.|+++.......   ..+...|+|||++++-
T Consensus       144 ~~~~~d~~~~--------------------~~~~~~fD~Iiv~~a~~~~p---~~l~~~Lk~gG~lV~p  189 (223)
T d1r18a_         144 LIVEGDGRKG--------------------YPPNAPYNAIHVGAAAPDTP---TELINQLASGGRLIVP  189 (223)
T ss_dssp             EEEESCGGGC--------------------CGGGCSEEEEEECSCBSSCC---HHHHHTEEEEEEEEEE
T ss_pred             EEEecccccc--------------------cccccceeeEEEEeechhch---HHHHHhcCCCcEEEEE
Confidence            8888997642                    23357899999988765433   4567899999999873

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=3.9e-12  Score=107.70  Aligned_cols=108  Identities=15%  Similarity=0.135  Sum_probs=80.8

Q ss_pred             ccCCCeEEEEcCcchHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHHc-------CCCCCcceEEeccCccccccccc
Q 026513           68 IKGGELFLDYGTGSGILGIAAIKF-GAAMSVGADIDPQAIKSAHQNAALN-------NIGPKKMKLHLVPDRTFTASMNE  139 (237)
Q Consensus        68 ~~~~~~vLDlG~G~G~~~~~la~~-~~~~v~~vD~s~~~i~~a~~~~~~~-------~~~~~~~~v~~~~~d~~~~~~~~  139 (237)
                      ++++.+|||+|||+|.++..+++. +..+++|+|+++.+++.|+++....       ++...  ++.++++|+.+....+
T Consensus       149 l~~~~~vlD~GcG~G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~--~i~~~~gd~~~~~~~~  226 (328)
T d1nw3a_         149 MTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHA--EYTLERGDFLSEEWRE  226 (328)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHCCCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCC--CEEEEECCTTSHHHHH
T ss_pred             CCCCCEEEEcCCCCCHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCC--ceEEEECccccccccc
Confidence            678999999999999999988864 7778999999999999998876542       23222  4888999986422110


Q ss_pred             cccccccccccccccCCCCCCceeEEEEeCCh--HHHHHHHHHHhHhcCCCeEEEEec
Q 026513          140 RVDGVVEDLSSHKIRGISQTEKYDVVIANILL--NPLLQLADHIVSYAKPGAVVGISG  195 (237)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~--~~~~~~l~~~~~~L~~gG~liis~  195 (237)
                                      .  -..+|+|++|...  ..+...+.++.+.|||||.+++..
T Consensus       227 ----------------~--~~~advi~~~~~~f~~~~~~~l~e~~r~LKpGg~iv~~~  266 (328)
T d1nw3a_         227 ----------------R--IANTSVIFVNNFAFGPEVDHQLKERFANMKEGGRIVSSK  266 (328)
T ss_dssp             ----------------H--HHHCSEEEECCTTTCHHHHHHHHHHHTTCCTTCEEEESS
T ss_pred             ----------------c--cCcceEEEEcceecchHHHHHHHHHHHhCCCCcEEEEec
Confidence                            0  0136899987654  334567889999999999999864

>d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: COMT domain-containing protein 1, COMTD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=1.2e-11  Score=98.64  Aligned_cols=125  Identities=17%  Similarity=0.204  Sum_probs=96.0

Q ss_pred             hhHHHHHHHHHhhccCCCeEEEEcCcchHHHHHHHHh--CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcc
Q 026513           55 ATTKLCLLLLRRLIKGGELFLDYGTGSGILGIAAIKF--GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRT  132 (237)
Q Consensus        55 ~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~la~~--~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~  132 (237)
                      +....++..+.+. ...++|||+|||+|+-++.++..  ...+++.+|.++...+.|++++...++.+   +++++.+|.
T Consensus        45 ~~~g~lL~~L~~~-~~~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag~~~---~i~~~~Gda  120 (219)
T d2avda1          45 CEQAQLLANLARL-IQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEH---KIDLRLKPA  120 (219)
T ss_dssp             HHHHHHHHHHHHH-TTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTT---TEEEEESCH
T ss_pred             HHHHHHHHHHHHc-cCCCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcCccc---eEEEEEeeh
Confidence            3344444444433 34569999999999999999864  35789999999999999999999999886   588889987


Q ss_pred             ccccccccccccccccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEeccC
Q 026513          133 FTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGIL  197 (237)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~~~  197 (237)
                      .+..     +.++         .-....+||+|+.+..-..+..++..+.++|+|||.+++..++
T Consensus       121 ~e~l-----~~~~---------~~~~~~~fD~ifiD~dk~~y~~~~~~~~~lL~~GGvii~Dn~l  171 (219)
T d2avda1         121 LETL-----DELL---------AAGEAGTFDVAVVDADKENCSAYYERCLQLLRPGGILAVLRVL  171 (219)
T ss_dssp             HHHH-----HHHH---------HTTCTTCEEEEEECSCSTTHHHHHHHHHHHEEEEEEEEEECCS
T ss_pred             hhcc-----hhhh---------hhcccCCccEEEEeCCHHHHHHHHHHHHHHhcCCcEEEEeCCc
Confidence            6311     1010         1112468999999988888888899999999999999997664

>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Histamine methyltransferase
domain: Histamine methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=4.1e-12  Score=104.82  Aligned_cols=111  Identities=12%  Similarity=0.060  Sum_probs=76.6

Q ss_pred             CCeEEEEcCcchHHHHHHHHh-----CC--CeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccc
Q 026513           71 GELFLDYGTGSGILGIAAIKF-----GA--AMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDG  143 (237)
Q Consensus        71 ~~~vLDlG~G~G~~~~~la~~-----~~--~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~  143 (237)
                      ..+|||+|||+|.++..++..     +.  ..++|+|+|+.+++.|++++...... ..+.+.+...+..+..       
T Consensus        41 ~~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~-------  112 (280)
T d1jqea_          41 EIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNL-ENVKFAWHKETSSEYQ-------  112 (280)
T ss_dssp             EEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCSC-TTEEEEEECSCHHHHH-------
T ss_pred             CCeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhcccc-ccccccchhhhhhhhc-------
Confidence            347999999999998876532     22  35799999999999999987643211 1223344444332100       


Q ss_pred             cccccccccccCCCCCCceeEEEEeCChHHH---HHHHHHHhHhcCCCeEEEEecc
Q 026513          144 VVEDLSSHKIRGISQTEKYDVVIANILLNPL---LQLADHIVSYAKPGAVVGISGI  196 (237)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~fD~I~~n~~~~~~---~~~l~~~~~~L~~gG~liis~~  196 (237)
                             .......++.+||+|+|...++++   ..+++++.++|+|||.+++...
T Consensus       113 -------~~~~~~~~~~~fD~I~~~~~l~~~~d~~~~l~~l~~~LkpgG~l~i~~~  161 (280)
T d1jqea_         113 -------SRMLEKKELQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTNAKMLIIVV  161 (280)
T ss_dssp             -------HHHTTSSSCCCEEEEEEESCGGGCSCHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             -------chhcccCCCCceeEEEEccceecCCCHHHHHHHHHhhCCCCCEEEEEEe
Confidence                   001122346799999999988765   4679999999999999998754

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.33  E-value=6.5e-12  Score=108.69  Aligned_cols=119  Identities=19%  Similarity=0.266  Sum_probs=80.7

Q ss_pred             HHHHHHHh-hccCCCeEEEEcCcchHHHHHHHH-hCCCeEEEEeCCHHHHHHHHHHHHHcC-------CCCCcceEEecc
Q 026513           59 LCLLLLRR-LIKGGELFLDYGTGSGILGIAAIK-FGAAMSVGADIDPQAIKSAHQNAALNN-------IGPKKMKLHLVP  129 (237)
Q Consensus        59 ~~~~~l~~-~~~~~~~vLDlG~G~G~~~~~la~-~~~~~v~~vD~s~~~i~~a~~~~~~~~-------~~~~~~~v~~~~  129 (237)
                      ++.+.++. .+++|.++||||||+|.++..+|. .|..+++|+|+++.+++.|++++...+       ......... ..
T Consensus       204 ~i~~Il~~l~Lkpgd~fLDLGCG~G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~~~~-~~  282 (406)
T d1u2za_         204 FLSDVYQQCQLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFS-LK  282 (406)
T ss_dssp             HHHHHHHHTTCCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEE-ES
T ss_pred             HHHHHHHHhCCCCCCEEEeCCCCCcHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhccccccceee-ee
Confidence            34444444 368999999999999999998885 577889999999999999999876532       222211222 23


Q ss_pred             CccccccccccccccccccccccccCCCCCCceeEEEEeCCh--HHHHHHHHHHhHhcCCCeEEEEec
Q 026513          130 DRTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILL--NPLLQLADHIVSYAKPGAVVGISG  195 (237)
Q Consensus       130 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~--~~~~~~l~~~~~~L~~gG~liis~  195 (237)
                      ++..+...               .+..  -..+|+|++|...  ..+.+.+.++.+.|||||.++++.
T Consensus       283 ~~f~~~~~---------------~d~~--~~~adVV~inn~~f~~~l~~~L~ei~r~LKPGGrIVs~~  333 (406)
T d1u2za_         283 KSFVDNNR---------------VAEL--IPQCDVILVNNFLFDEDLNKKVEKILQTAKVGCKIISLK  333 (406)
T ss_dssp             SCSTTCHH---------------HHHH--GGGCSEEEECCTTCCHHHHHHHHHHHTTCCTTCEEEESS
T ss_pred             echhhccc---------------cccc--cccceEEEEecccCchHHHHHHHHHHHhcCCCcEEEEec
Confidence            33221000               0000  1358899987532  345677899999999999999864

>d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Catechol O-methyltransferase, COMT
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.31  E-value=1.7e-11  Score=97.59  Aligned_cols=124  Identities=13%  Similarity=0.211  Sum_probs=93.4

Q ss_pred             CCCeEEEEcCcchHHHHHHHHh--CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccc
Q 026513           70 GGELFLDYGTGSGILGIAAIKF--GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVED  147 (237)
Q Consensus        70 ~~~~vLDlG~G~G~~~~~la~~--~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  147 (237)
                      +.++|||+|||+|..++.+++.  ...+++++|+++.+++.|++++...|+.+   +++++.+|..+.         +..
T Consensus        56 kpk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~gl~~---~i~l~~Gd~~e~---------l~~  123 (214)
T d2cl5a1          56 SPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGLQD---KVTILNGASQDL---------IPQ  123 (214)
T ss_dssp             CCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHHTCGG---GEEEEESCHHHH---------GGG
T ss_pred             CCCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHcCCCc---cceeeecccccc---------ccc
Confidence            3469999999999999999864  35789999999999999999999999876   588999997631         111


Q ss_pred             cccccccCCCCCCceeEEEEeCChHHHHH--HHHHHhHhcCCCeEEEEeccCCCCHHHHHHHHhh
Q 026513          148 LSSHKIRGISQTEKYDVVIANILLNPLLQ--LADHIVSYAKPGAVVGISGILSEQLPHIINRYSE  210 (237)
Q Consensus       148 ~~~~~~~~~~~~~~fD~I~~n~~~~~~~~--~l~~~~~~L~~gG~liis~~~~~~~~~~~~~~~~  210 (237)
                      +     .......+||+|+++..-..+..  .+....++|+|||++++..++....++....++.
T Consensus       124 l-----~~~~~~~~~D~ifiD~~~~~~~~~~~l~~~~~lLkpGGvIv~Ddvl~~g~~~~~~~vr~  183 (214)
T d2cl5a1         124 L-----KKKYDVDTLDMVFLDHWKDRYLPDTLLLEKCGLLRKGTVLLADNVIVPGTPDFLAYVRG  183 (214)
T ss_dssp             H-----HHHSCCCCEEEEEECSCGGGHHHHHHHHHHTTCEEEEEEEEESCCCCCCCHHHHHHHHH
T ss_pred             h-----hhcccccccceeeecccccccccHHHHHHHhCccCCCcEEEEeCcCCCCChHHHHHHhc
Confidence            1     01112468999999876544433  3566778899999999988776666666665553

>d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Putative spermidine synthetase PF0127 (SpeE)
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=99.28  E-value=3.3e-11  Score=99.46  Aligned_cols=156  Identities=13%  Similarity=0.101  Sum_probs=105.3

Q ss_pred             hhHHHHHHHHHhhccCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcC--------CCCCcceEE
Q 026513           55 ATTKLCLLLLRRLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNN--------IGPKKMKLH  126 (237)
Q Consensus        55 ~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~--------~~~~~~~v~  126 (237)
                      .....+........+..++||.+|+|.|..+..+.+++..+|+++|+++.+++.|++....++        ..+.  +++
T Consensus        57 ~Yhe~l~~~~l~~~~~p~~vLiiG~G~G~~~~~~l~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~--rv~  134 (276)
T d1mjfa_          57 SYHEPLVHPAMLAHPKPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHE--KAK  134 (276)
T ss_dssp             HHHHHHHHHHHHHSSCCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCS--SEE
T ss_pred             HHHHHhhcchhhcCCCCceEEEecCCchHHHHHHHHhCCceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCC--Cce
Confidence            344444443333345678999999999999988888777899999999999999998653221        1112  578


Q ss_pred             eccCccccccccccccccccccccccccCCCCCCceeEEEEeCChH--H-----HHHHHHHHhHhcCCCeEEEEec-cCC
Q 026513          127 LVPDRTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLN--P-----LLQLADHIVSYAKPGAVVGISG-ILS  198 (237)
Q Consensus       127 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~~--~-----~~~~l~~~~~~L~~gG~liis~-~~~  198 (237)
                      ++.+|.....                    ...++||+|+++.+-.  .     ..++++.+.+.|+|||++++.+ ...
T Consensus       135 i~~~Da~~~l--------------------~~~~~yDvIi~D~~~~~~~~~~L~t~eF~~~~~~~L~~~Gv~v~q~~s~~  194 (276)
T d1mjfa_         135 LTIGDGFEFI--------------------KNNRGFDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQAGSVY  194 (276)
T ss_dssp             EEESCHHHHH--------------------HHCCCEEEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEEEEEETT
T ss_pred             EEEChHHHHH--------------------hccCCCCEEEEeCCCCCCCcccccCHHHHHhhHhhcCCCceEEEecCCcc
Confidence            8889876321                    1146899999976521  1     1478999999999999999842 222


Q ss_pred             CC---HHHHHHHHhhcccccee------eecCCEEEEEEEEcc
Q 026513          199 EQ---LPHIINRYSEFLEDILV------SEMDDWTCVSGKKKR  232 (237)
Q Consensus       199 ~~---~~~~~~~~~~~~~~~~~------~~~~~w~~~~~~~~~  232 (237)
                      ..   ...+...++..|..+..      ...+.|..+.+.++.
T Consensus       195 ~~~~~~~~~~~tl~~~F~~v~~y~~~vP~y~~~w~f~~as~~~  237 (276)
T d1mjfa_         195 LFTDELISAYKEMKKVFDRVYYYSFPVIGYASPWAFLVGVKGD  237 (276)
T ss_dssp             TSHHHHHHHHHHHHHHCSEEEEEEECCTTSSSSEEEEEEEESS
T ss_pred             hhHHHHHHHHHHHHhhCCeeEEEEecCcCCCCceEEEEEeCCC
Confidence            22   23444445554544443      235789999988754

>d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Caffeoyl-CoA O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=99.25  E-value=2.2e-11  Score=97.61  Aligned_cols=124  Identities=15%  Similarity=0.215  Sum_probs=94.5

Q ss_pred             HHHHHHHHHhhccCCCeEEEEcCcchHHHHHHHHh--CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccc
Q 026513           57 TKLCLLLLRRLIKGGELFLDYGTGSGILGIAAIKF--GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFT  134 (237)
Q Consensus        57 ~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~la~~--~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~  134 (237)
                      ...++..+.+. ...++|||+||++|+-++.+++.  ...+++.+|.++...+.|++++...|+.+   ++.++.++..+
T Consensus        47 ~g~~L~~L~~~-~~~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g~~~---~i~~~~g~a~~  122 (227)
T d1susa1          47 EGQFLSMLLKL-INAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDH---KIDFREGPALP  122 (227)
T ss_dssp             HHHHHHHHHHH-HTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGG---GEEEEESCHHH
T ss_pred             HHHHHHHHHHh-cCCCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhcccc---ceeeeehHHHH
Confidence            33444444433 34569999999999999999863  35789999999999999999999999876   58888998763


Q ss_pred             ccccccccccccccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEeccC
Q 026513          135 ASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGIL  197 (237)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~~~  197 (237)
                      ..     ++++.        .....++||+||.+.--..+..+++.+.++|+|||.+++..++
T Consensus       123 ~L-----~~l~~--------~~~~~~~fD~iFiDa~k~~y~~~~e~~~~ll~~gGiii~DNvl  172 (227)
T d1susa1         123 VL-----DEMIK--------DEKNHGSYDFIFVDADKDNYLNYHKRLIDLVKVGGVIGYDNTL  172 (227)
T ss_dssp             HH-----HHHHH--------CGGGTTCBSEEEECSCSTTHHHHHHHHHHHBCTTCCEEEETTT
T ss_pred             HH-----HHHHh--------ccccCCceeEEEeccchhhhHHHHHHHHhhcCCCcEEEEccCC
Confidence            11     11111        0111468999999988778888999999999999999997553

>d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Hypothetical protein Lmo1582
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.25  E-value=4.4e-11  Score=100.82  Aligned_cols=135  Identities=18%  Similarity=0.205  Sum_probs=93.7

Q ss_pred             chhHHHHHHHHHhh--ccCCCeEEEEcCcchHHHHHHHHh------CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceE
Q 026513           54 HATTKLCLLLLRRL--IKGGELFLDYGTGSGILGIAAIKF------GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKL  125 (237)
Q Consensus        54 ~~~~~~~~~~l~~~--~~~~~~vLDlG~G~G~~~~~la~~------~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v  125 (237)
                      .+...++...+...  ..++.+|||.+||+|.+...+...      ...+++|+|+++.+++.|+.++...+..     .
T Consensus        99 ~~i~~~m~~l~~~~~~~~~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~~~~-----~  173 (328)
T d2f8la1          99 DSIGFIVAYLLEKVIQKKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQK-----M  173 (328)
T ss_dssp             HHHHHHHHHHHHHHHTTCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCC-----C
T ss_pred             HHHHHHHHHHHHHHhCCCCCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHhhhh-----h
Confidence            44455565555443  245678999999999999887642      2236999999999999999998877765     3


Q ss_pred             EeccCccccccccccccccccccccccccCCCCCCceeEEEEeCChH---------------------HHHHHHHHHhHh
Q 026513          126 HLVPDRTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLN---------------------PLLQLADHIVSY  184 (237)
Q Consensus       126 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~~---------------------~~~~~l~~~~~~  184 (237)
                      .+..+|...                     .....+||+|++|||+.                     ....++..+.++
T Consensus       174 ~~~~~d~~~---------------------~~~~~~fD~vi~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~  232 (328)
T d2f8la1         174 TLLHQDGLA---------------------NLLVDPVDVVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRY  232 (328)
T ss_dssp             EEEESCTTS---------------------CCCCCCEEEEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHT
T ss_pred             hhhcccccc---------------------ccccccccccccCCCCCCCccchhhhhcchhcccCcchHHHHHHHHHHHh
Confidence            445566431                     22357899999999952                     112368889999


Q ss_pred             cCCCeEEEEe---ccC-CCCHHHHHHHHhhcccc
Q 026513          185 AKPGAVVGIS---GIL-SEQLPHIINRYSEFLED  214 (237)
Q Consensus       185 L~~gG~liis---~~~-~~~~~~~~~~~~~~~~~  214 (237)
                      |+|||++++.   .++ ......+...+...+..
T Consensus       233 Lk~~G~~~~I~p~~~l~~~~~~~lR~~L~~~~~i  266 (328)
T d2f8la1         233 TKPGGYLFFLVPDAMFGTSDFAKVDKFIKKNGHI  266 (328)
T ss_dssp             EEEEEEEEEEEEGGGGGSTTHHHHHHHHHHHEEE
T ss_pred             cCCCCceEEEecCccccCchhHHHHHHHHhCCcE
Confidence            9999987663   343 44556666666655433

>d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.20  E-value=8.2e-11  Score=97.66  Aligned_cols=143  Identities=13%  Similarity=0.082  Sum_probs=99.2

Q ss_pred             ccCCCeEEEEcCcchHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHHcC--CCCCcceEEeccCcccccccccccccc
Q 026513           68 IKGGELFLDYGTGSGILGIAAIKF-GAAMSVGADIDPQAIKSAHQNAALNN--IGPKKMKLHLVPDRTFTASMNERVDGV  144 (237)
Q Consensus        68 ~~~~~~vLDlG~G~G~~~~~la~~-~~~~v~~vD~s~~~i~~a~~~~~~~~--~~~~~~~v~~~~~d~~~~~~~~~~~~~  144 (237)
                      .+..++||-+|.|.|..+..+.++ +..+|+++|+++.+++.|++.+..+.  ..+.  +++++.+|+.+..        
T Consensus        87 ~~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~--rv~v~~~Da~~~l--------  156 (295)
T d1inla_          87 HPNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDP--RAEIVIANGAEYV--------  156 (295)
T ss_dssp             SSSCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCT--TEEEEESCHHHHG--------
T ss_pred             CCCCceEEEecCCchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhhcccccCC--CcEEEhhhHHHHH--------
Confidence            345679999999999999988876 56889999999999999999765432  2222  4778889987422        


Q ss_pred             ccccccccccCCCCCCceeEEEEeCChHH--------HHHHHHHHhHhcCCCeEEEEecc-CCCC---HHHHHHHHhhcc
Q 026513          145 VEDLSSHKIRGISQTEKYDVVIANILLNP--------LLQLADHIVSYAKPGAVVGISGI-LSEQ---LPHIINRYSEFL  212 (237)
Q Consensus       145 ~~~~~~~~~~~~~~~~~fD~I~~n~~~~~--------~~~~l~~~~~~L~~gG~liis~~-~~~~---~~~~~~~~~~~~  212 (237)
                       +        .  ..++||+|+++..-..        ..++++.+.+.|+|||.+++..- ..-.   ...+.+.+...|
T Consensus       157 -~--------~--~~~~yDvIi~D~~dp~~~~~~~L~t~efy~~~~~~L~~~Gi~v~q~~sp~~~~~~~~~i~~tl~~vF  225 (295)
T d1inla_         157 -R--------K--FKNEFDVIIIDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAETEDPFYDIGWFKLAYRRISKVF  225 (295)
T ss_dssp             -G--------G--CSSCEEEEEEEC----------CCSHHHHHHHHHHEEEEEEEEEECCCTTTTHHHHHHHHHHHHHHC
T ss_pred             -h--------c--CCCCCCEEEEcCCCCCcCchhhhccHHHHHHHHhhcCCCcEEEEecCChhhhhHHHHHHHHHHHhhc
Confidence             1        1  2468999999864211        14789999999999999998522 1122   234444445545


Q ss_pred             ccceee-----e--cCCEEEEEEEEc
Q 026513          213 EDILVS-----E--MDDWTCVSGKKK  231 (237)
Q Consensus       213 ~~~~~~-----~--~~~w~~~~~~~~  231 (237)
                      ..+...     .  .|.|+.++++|.
T Consensus       226 ~~v~~y~~~vPtyp~G~w~f~~aSk~  251 (295)
T d1inla_         226 PITRVYLGFMTTYPSGMWSYTFASKG  251 (295)
T ss_dssp             SEEEEEEEECTTSTTSEEEEEEEESS
T ss_pred             ceeEEEEeeeceecCcccEEEEEeCC
Confidence            444332     1  478999999875

>d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Bacillus subtilis [TaxId: 1423]

Probab=99.18  E-value=9.3e-11  Score=96.53  Aligned_cols=156  Identities=15%  Similarity=0.082  Sum_probs=106.3

Q ss_pred             HHHHHHHHHhhccCCCeEEEEcCcchHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccc
Q 026513           57 TKLCLLLLRRLIKGGELFLDYGTGSGILGIAAIKF-GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTA  135 (237)
Q Consensus        57 ~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~la~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~  135 (237)
                      ...+........+..++||-+|-|.|..+..+.++ +..+|+.+|+++.+++.|++....+......-++.++.+|....
T Consensus        62 he~l~h~~l~~~~~p~~vLiiGgG~G~~~~~~l~~~~~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~~D~~~~  141 (274)
T d1iy9a_          62 HEMVAHVPLFTHPNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMH  141 (274)
T ss_dssp             HHHHHHHHHHHSSSCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHH
T ss_pred             hhhhccchhhccCCcceEEecCCCCcHHHHHHHhcCCcceEEEecCCHHHHHHHHHhChhhcccccCCCeEEEechHHHH
Confidence            33333333333456689999999999999999876 67899999999999999999865432221223577888887642


Q ss_pred             cccccccccccccccccccCCCCCCceeEEEEeCChH-------HHHHHHHHHhHhcCCCeEEEEec-cCCCC---HHHH
Q 026513          136 SMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLN-------PLLQLADHIVSYAKPGAVVGISG-ILSEQ---LPHI  204 (237)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~~-------~~~~~l~~~~~~L~~gG~liis~-~~~~~---~~~~  204 (237)
                      .         +        .  .+.+||+|+++.+-.       ...++++.+.+.|+|||+++... .....   ...+
T Consensus       142 l---------~--------~--~~~~yDvIi~D~~~p~~~~~~L~t~eFy~~~~~~L~~~Gv~v~q~~s~~~~~~~~~~i  202 (274)
T d1iy9a_         142 I---------A--------K--SENQYDVIMVDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQTDNPWFTPELITNV  202 (274)
T ss_dssp             H---------H--------T--CCSCEEEEEESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEECCCTTTCHHHHHHH
T ss_pred             H---------h--------h--cCCCCCEEEEcCCCCCCcchhhccHHHHHHHHhhcCCCceEEEecCCccccHHHHHHH
Confidence            1         1        1  256899999976421       13578999999999999999852 11112   2345


Q ss_pred             HHHHhhccccceeee-------cCCEEEEEEEEc
Q 026513          205 INRYSEFLEDILVSE-------MDDWTCVSGKKK  231 (237)
Q Consensus       205 ~~~~~~~~~~~~~~~-------~~~w~~~~~~~~  231 (237)
                      ...++..|..+....       .+.|..++++|+
T Consensus       203 ~~tl~~~F~~v~~y~~~vPsy~~g~w~f~~aS~~  236 (274)
T d1iy9a_         203 QRDVKEIFPITKLYTANIPTYPSGLWTFTIGSKK  236 (274)
T ss_dssp             HHHHHTTCSEEEEEEECCTTSGGGCEEEEEEESS
T ss_pred             HHhhhhhcCceEEEEEEeeecCCCceEEEEEcCC
Confidence            555555565444322       467999998875

>d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.18  E-value=9.5e-11  Score=96.94  Aligned_cols=146  Identities=16%  Similarity=0.110  Sum_probs=100.1

Q ss_pred             ccCCCeEEEEcCcchHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccc
Q 026513           68 IKGGELFLDYGTGSGILGIAAIKF-GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVE  146 (237)
Q Consensus        68 ~~~~~~vLDlG~G~G~~~~~la~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  146 (237)
                      .+..++||-+|.|.|..+..+.++ +..+++++|+++.+++.|++.+..+......-+++++.+|+....          
T Consensus        76 ~~~pk~vLiiGgG~G~~~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da~~~l----------  145 (285)
T d2o07a1          76 HPNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFM----------  145 (285)
T ss_dssp             SSSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHH----------
T ss_pred             CcCcCeEEEeCCCchHHHHHHHHcCCcceeeeccCCHHHHHHHHhhchhhccccCCCCceEEEccHHHHH----------
Confidence            355679999999999999999876 678999999999999999997653211111125788899987421          


Q ss_pred             ccccccccCCCCCCceeEEEEeCCh------HH-HHHHHHHHhHhcCCCeEEEEecc-CCCCH---HHHHHHHhhccccc
Q 026513          147 DLSSHKIRGISQTEKYDVVIANILL------NP-LLQLADHIVSYAKPGAVVGISGI-LSEQL---PHIINRYSEFLEDI  215 (237)
Q Consensus       147 ~~~~~~~~~~~~~~~fD~I~~n~~~------~~-~~~~l~~~~~~L~~gG~liis~~-~~~~~---~~~~~~~~~~~~~~  215 (237)
                             ..  ..++||+|+++..-      .. ..++++.+++.|+|||.+++..- .....   ..+...+...|..+
T Consensus       146 -------~~--~~~~yDvIi~D~~~p~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~~s~~~~~~~~~~~~~tl~~~F~~v  216 (285)
T d2o07a1         146 -------KQ--NQDAFDVIITDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQGECQWLHLDLIKEMRQFCQSLFPVV  216 (285)
T ss_dssp             -------HT--CSSCEEEEEEECC-----------CHHHHHHHHHEEEEEEEEEEEECTTTCHHHHHHHHHHHHHHCSEE
T ss_pred             -------hc--CCCCCCEEEEcCCCCCCcccccccHHHHHHHHHhcCCCCeEEEeccchhhhHHHHHHHHHHHHhcCCee
Confidence                   11  24689999998642      11 13679999999999999998532 22222   33444445545554


Q ss_pred             eee-------ecCCEEEEEEEEcc
Q 026513          216 LVS-------EMDDWTCVSGKKKR  232 (237)
Q Consensus       216 ~~~-------~~~~w~~~~~~~~~  232 (237)
                      ...       ..+.|+.++++|.+
T Consensus       217 ~~y~~~vP~~~~g~w~f~~aSk~p  240 (285)
T d2o07a1         217 AYAYCTIPTYPSGQIGFMLCSKNP  240 (285)
T ss_dssp             EEEEEECTTSGGGEEEEEEEESST
T ss_pred             eEEeeeeeecCCCCeEEEEEECCc
Confidence            431       24679999998753

>d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.18  E-value=6.4e-11  Score=92.53  Aligned_cols=123  Identities=15%  Similarity=0.185  Sum_probs=90.8

Q ss_pred             ccCCCeEEEEcCcchHHHHHHHH-hCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccc
Q 026513           68 IKGGELFLDYGTGSGILGIAAIK-FGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVE  146 (237)
Q Consensus        68 ~~~~~~vLDlG~G~G~~~~~la~-~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  146 (237)
                      +.++..+||++||+|..+..++. .+..+|+|+|.++.+++.|++++...+.     ++.++++++.+..      ..+.
T Consensus        21 ~~~~~~~lD~t~G~Gghs~~il~~~~~~~vi~~D~d~~~l~~a~~~l~~~~~-----r~~~~~~~f~~~~------~~~~   89 (192)
T d1m6ya2          21 PEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFSD-----RVSLFKVSYREAD------FLLK   89 (192)
T ss_dssp             CCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGTT-----TEEEEECCGGGHH------HHHH
T ss_pred             CCCCCEEEEecCCCcHHHHHHHhcCCCCeEEEeechHHHHHHHHHhhccccc-----cccchhHHHhhHH------HHHH
Confidence            46788999999999999998876 4678899999999999999999876542     3778888765311      0111


Q ss_pred             ccccccccCCCCCCceeEEEEeCCh------------HHHHHHHHHHhHhcCCCeEEEEeccCCCCHHHHHHHHhh
Q 026513          147 DLSSHKIRGISQTEKYDVVIANILL------------NPLLQLADHIVSYAKPGAVVGISGILSEQLPHIINRYSE  210 (237)
Q Consensus       147 ~~~~~~~~~~~~~~~fD~I~~n~~~------------~~~~~~l~~~~~~L~~gG~liis~~~~~~~~~~~~~~~~  210 (237)
                              . ....+||.|+.+...            ....+.+..+.++|+|||.+++..+.+.+..-+...+..
T Consensus        90 --------~-~~~~~vdgIl~DlGvSs~Qld~~~r~~~~~~~~L~~a~~~Lk~gG~l~ii~f~s~Edr~vk~~f~~  156 (192)
T d1m6ya2          90 --------T-LGIEKVDGILMDLGVSTYQLKGENRELENLKEFLKKAEDLLNPGGRIVVISFHSLEDRIVKETFRN  156 (192)
T ss_dssp             --------H-TTCSCEEEEEEECSCCHHHHHTSHTHHHHHHHHHHHGGGGEEEEEEEEEEESSHHHHHHHHHHHHH
T ss_pred             --------H-cCCCCcceeeeccchhHhhhhhhhccchhHHHHHHHHHHhcCCCCeeeeeccccHHHHHHHHHHhh
Confidence                    1 124689999998653            233467889999999999999877665544445555554

>d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermus thermophilus [TaxId: 274]

Probab=99.17  E-value=1.7e-10  Score=96.56  Aligned_cols=145  Identities=19%  Similarity=0.200  Sum_probs=100.1

Q ss_pred             ccCCCeEEEEcCcchHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHHc-CCCCCcceEEeccCccccccccccccccc
Q 026513           68 IKGGELFLDYGTGSGILGIAAIKF-GAAMSVGADIDPQAIKSAHQNAALN-NIGPKKMKLHLVPDRTFTASMNERVDGVV  145 (237)
Q Consensus        68 ~~~~~~vLDlG~G~G~~~~~la~~-~~~~v~~vD~s~~~i~~a~~~~~~~-~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  145 (237)
                      .+..++||.+|.|.|..+..+.+. +..+|+++|+++.+++.|++.+... +.....-+++++.+|+.+..         
T Consensus        75 ~~~pk~VLiiG~G~G~~~~~ll~~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~l---------  145 (312)
T d1uira_          75 HPEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYL---------  145 (312)
T ss_dssp             SSCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHH---------
T ss_pred             CCCcceEEEeCCCchHHHHHHHhcCCcceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEchHHHHh---------
Confidence            355679999999999999988876 5779999999999999999986431 11111125788899987421         


Q ss_pred             cccccccccCCCCCCceeEEEEeCC--h-------HH-HHHHHHHHhHhcCCCeEEEEe---ccCC-CCH-HHHHHHHhh
Q 026513          146 EDLSSHKIRGISQTEKYDVVIANIL--L-------NP-LLQLADHIVSYAKPGAVVGIS---GILS-EQL-PHIINRYSE  210 (237)
Q Consensus       146 ~~~~~~~~~~~~~~~~fD~I~~n~~--~-------~~-~~~~l~~~~~~L~~gG~liis---~~~~-~~~-~~~~~~~~~  210 (237)
                      +        .  .+.+||+|+++.+  .       .. ..++++.+.+.|+|||++++.   .... .+. ..+.+.++.
T Consensus       146 ~--------~--~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gvlv~~~~s~~~~~~~~~~~i~~tl~~  215 (312)
T d1uira_         146 E--------R--TEERYDVVIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQTGMILLTHHRVHPVVHRTVRE  215 (312)
T ss_dssp             H--------H--CCCCEEEEEEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEEEEECC---CHHHHHHHHHHT
T ss_pred             h--------h--cCCcccEEEEeCCCcccccchhhhhhhHHHHHHHHHhcCCCceEEEecCCcccchHHHHHHHHHHHHH
Confidence            1        1  2568999998763  1       11 257899999999999999984   2222 222 334455666


Q ss_pred             ccccceee------ecCCEEEEEEEEc
Q 026513          211 FLEDILVS------EMDDWTCVSGKKK  231 (237)
Q Consensus       211 ~~~~~~~~------~~~~w~~~~~~~~  231 (237)
                      .|..+..-      ..++|..+.++|.
T Consensus       216 ~F~~V~~y~~~vPs~~~~w~f~~aS~~  242 (312)
T d1uira_         216 AFRYVRSYKNHIPGFFLNFGFLLASDA  242 (312)
T ss_dssp             TCSEEEEEEEEEGGGTEEEEEEEEESS
T ss_pred             hCceEEEEEeeeCCcCCCCEeEEEeCC
Confidence            56555442      2457999999874

>d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.17  E-value=1.6e-10  Score=96.39  Aligned_cols=173  Identities=14%  Similarity=0.105  Sum_probs=109.5

Q ss_pred             eEEeCcc-cccCCCCchhHHHHHHHHHhhccCCCeEEEEcCcchHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHHcC
Q 026513           40 NIILNPG-LAFGSGEHATTKLCLLLLRRLIKGGELFLDYGTGSGILGIAAIKF-GAAMSVGADIDPQAIKSAHQNAALNN  117 (237)
Q Consensus        40 ~~~~~~~-~~f~~g~~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~la~~-~~~~v~~vD~s~~~i~~a~~~~~~~~  117 (237)
                      .+.++.. +.-..........+........+..++||-+|.|.|..+..+.++ +..+|+.+|+++.+++.|++.+..+.
T Consensus        75 ~L~LDg~~q~~e~de~~YhE~l~h~pl~~~~~pk~VLIiGgG~G~~~rellk~~~v~~v~~VEID~~Vv~~a~~~~~~~~  154 (312)
T d2b2ca1          75 VLVLDGIVQATERDEFSYQEMLAHLPMFAHPDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMS  154 (312)
T ss_dssp             EEEETTEEEEESSSSSHHHHHHHHHHHHHSSSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTS
T ss_pred             EEEECCceeeecccHHHHHHHhhhHHHhcCCCCCeEEEeCCCchHHHHHHHHcCCcceEEEEcccHHHHHHHHhhchhhc
Confidence            3445544 222222344444444433333455679999999999999999886 56789999999999999998764432


Q ss_pred             CCCCcceEEeccCccccccccccccccccccccccccCCCCCCceeEEEEeCChH-------HHHHHHHHHhHhcCCCeE
Q 026513          118 IGPKKMKLHLVPDRTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLN-------PLLQLADHIVSYAKPGAV  190 (237)
Q Consensus       118 ~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~~-------~~~~~l~~~~~~L~~gG~  190 (237)
                      .....-+++++.+|.....         .        .  ...+||+|+++.+-.       ...++++.+.+.|+|||.
T Consensus       155 ~~~~dprv~i~i~Da~~~l---------~--------~--~~~~yDvII~D~~dp~~~~~~L~t~eFy~~~~~~L~~~Gi  215 (312)
T d2b2ca1         155 CGFSHPKLDLFCGDGFEFL---------K--------N--HKNEFDVIITDSSDPVGPAESLFGQSYYELLRDALKEDGI  215 (312)
T ss_dssp             GGGGCTTEEEECSCHHHHH---------H--------H--CTTCEEEEEECCC-------------HHHHHHHHEEEEEE
T ss_pred             cccCCCCeEEEEchHHHHH---------H--------h--CCCCCCEEEEcCCCCCCcchhhhhHHHHHHHHhhcCCCcE
Confidence            2111225788889987421         1        1  256899999976521       124679999999999999


Q ss_pred             EEEec-cCCCC---HHHHHHHHhhccccceeee-------cCCEEEEEEEEc
Q 026513          191 VGISG-ILSEQ---LPHIINRYSEFLEDILVSE-------MDDWTCVSGKKK  231 (237)
Q Consensus       191 liis~-~~~~~---~~~~~~~~~~~~~~~~~~~-------~~~w~~~~~~~~  231 (237)
                      ++... .....   ...+...++..|..+....       .|.|..+.+.+.
T Consensus       216 ~v~q~~s~~~~~~~~~~i~~~l~~vF~~v~~y~~~vPtyp~G~w~f~~aSk~  267 (312)
T d2b2ca1         216 LSSQGESVWLHLPLIAHLVAFNRKIFPAVTYAQSIVSTYPSGSMGYLICAKN  267 (312)
T ss_dssp             EEEECCCTTTCHHHHHHHHHHHHHHCSEEEEEEEECTTSGGGEEEEEEEESS
T ss_pred             EEEecCChHHhHHHHHHHHHHhhhccceEEEeeeccCCcCCccceeeEEECC
Confidence            99952 12122   2344444455454443322       478999888864

>d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.08  E-value=5e-10  Score=92.75  Aligned_cols=157  Identities=16%  Similarity=0.129  Sum_probs=103.0

Q ss_pred             HHHHHHHHHhhccCCCeEEEEcCcchHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccc
Q 026513           57 TKLCLLLLRRLIKGGELFLDYGTGSGILGIAAIKF-GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTA  135 (237)
Q Consensus        57 ~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~la~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~  135 (237)
                      ...+........+..++||-+|-|.|..+..+.++ +..+++++|+++.+++.+++....+......-+++++.+|....
T Consensus        67 he~l~h~~~~~~~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~Da~~~  146 (290)
T d1xj5a_          67 QEMITHLPLCSIPNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAF  146 (290)
T ss_dssp             HHHHHHHHHTTSSCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHH
T ss_pred             HHHHhhHHHhhCCCCcceEEecCCchHHHHHHHhcccceeeEEecCCHHHHHHHHHhchhhhccccCCCcEEEEccHHHH
Confidence            33333333333355679999999999999998876 66789999999999999999764322111112577888887642


Q ss_pred             cccccccccccccccccccCCCCCCceeEEEEeCCh------HH-HHHHHHHHhHhcCCCeEEEEec-cCCCCH---HHH
Q 026513          136 SMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILL------NP-LLQLADHIVSYAKPGAVVGISG-ILSEQL---PHI  204 (237)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~------~~-~~~~l~~~~~~L~~gG~liis~-~~~~~~---~~~  204 (237)
                      .                 .. ..+++||+|+++..-      .. ..++++.+.+.|+|||.+++.. ......   ..+
T Consensus       147 l-----------------~~-~~~~~yDvIi~D~~dp~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~~s~~~~~~~~~~i  208 (290)
T d1xj5a_         147 L-----------------KN-AAEGSYDAVIVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQAESLWLHMDIIEDI  208 (290)
T ss_dssp             H-----------------HT-SCTTCEEEEEECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEECCCTTTCHHHHHHH
T ss_pred             H-----------------hh-ccccCccEEEEcCCCCCCcchhhCCHHHHHHHHHhcCCCcEEEEecCCcHHHHHHHHHH
Confidence            1                 11 124589999987642      11 2578999999999999999952 222222   334


Q ss_pred             HHHHhhccccce------ee--ecCCEEEEEEEEc
Q 026513          205 INRYSEFLEDIL------VS--EMDDWTCVSGKKK  231 (237)
Q Consensus       205 ~~~~~~~~~~~~------~~--~~~~w~~~~~~~~  231 (237)
                      .+.+++.|..+.      +.  ..|.|..+.++++
T Consensus       209 ~~~l~~vF~~~~~y~~~~vPty~~g~w~f~~as~~  243 (290)
T d1xj5a_         209 VSNCREIFKGSVNYAWTSVPTYPSGVIGFMLCSTE  243 (290)
T ss_dssp             HHHHHHHCSSCEEEEEEECTTSGGGEEEEEEEECS
T ss_pred             HhhhhhhcccceeEeeEeeeeecCCceEEEEEeCC
Confidence            444554443322      12  2467999988865

>d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.04  E-value=3e-09  Score=87.79  Aligned_cols=118  Identities=17%  Similarity=0.180  Sum_probs=86.8

Q ss_pred             ccCCCeEEEEcCcchHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccc
Q 026513           68 IKGGELFLDYGTGSGILGIAAIKF-GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVE  146 (237)
Q Consensus        68 ~~~~~~vLDlG~G~G~~~~~la~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  146 (237)
                      ..+|.+|||+++|+|+-+..++.. ...+|+++|+++.-++..+++++..++++    +.....|....           
T Consensus       100 ~~~g~~vLD~CAaPGgKt~~la~l~~~~~i~a~d~~~~R~~~l~~~~~r~g~~~----~~~~~~~~~~~-----------  164 (284)
T d1sqga2         100 PQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKA----TVKQGDGRYPS-----------  164 (284)
T ss_dssp             CCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCCC----EEEECCTTCTH-----------
T ss_pred             ccccceeEeccCccccchhhhhhhhhhhhhhhhhcchhhhhhHhhhhhcccccc----eeeeccccccc-----------
Confidence            467899999999999999988865 34679999999999999999999999875    44444433210           


Q ss_pred             ccccccccCCCCCCceeEEEEeCCh-------------------------HHHHHHHHHHhHhcCCCeEEEEe-ccC-CC
Q 026513          147 DLSSHKIRGISQTEKYDVVIANILL-------------------------NPLLQLADHIVSYAKPGAVVGIS-GIL-SE  199 (237)
Q Consensus       147 ~~~~~~~~~~~~~~~fD~I~~n~~~-------------------------~~~~~~l~~~~~~L~~gG~liis-~~~-~~  199 (237)
                              .....++||.|++++|-                         ....+++.++..+|+|||+|+.| |-+ .+
T Consensus       165 --------~~~~~~~fd~IL~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~~~  236 (284)
T d1sqga2         165 --------QWCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSVLPE  236 (284)
T ss_dssp             --------HHHTTCCEEEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCCCGG
T ss_pred             --------hhcccccccEEEEeccccccCccccccchhhccccchhhHHHHHHHHHHHHHHHhcCCCceEEEeeecCchh
Confidence                    11124689999999981                         12346799999999999999987 433 33


Q ss_pred             CHHHHHHHH
Q 026513          200 QLPHIINRY  208 (237)
Q Consensus       200 ~~~~~~~~~  208 (237)
                      +-+++...+
T Consensus       237 ENE~vv~~~  245 (284)
T d1sqga2         237 ENSLQIKAF  245 (284)
T ss_dssp             GTHHHHHHH
T ss_pred             hCHHHHHHH
Confidence            333444443

>d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TRM1-like
domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.03  E-value=6.6e-10  Score=95.14  Aligned_cols=105  Identities=18%  Similarity=0.212  Sum_probs=80.1

Q ss_pred             CCCeEEEEcCcchHHHHHHHH-hCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCc-----------ceEEeccCccccccc
Q 026513           70 GGELFLDYGTGSGILGIAAIK-FGAAMSVGADIDPQAIKSAHQNAALNNIGPKK-----------MKLHLVPDRTFTASM  137 (237)
Q Consensus        70 ~~~~vLDlG~G~G~~~~~la~-~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~-----------~~v~~~~~d~~~~~~  137 (237)
                      ++.+|||..||+|..++..+. .+..+|++.|+|+.+++.+++|++.|++.+..           ..+.+.+.|....  
T Consensus        45 ~~~~vLD~~sasG~rsiRya~E~~~~~V~~nDis~~A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~~Da~~~--  122 (375)
T d2dula1          45 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRL--  122 (375)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHH--
T ss_pred             CCCEEEEcCCCccHHHHHHHHhCCCCEEEEecCCHHHHHHHHHHHHhcCccccccccccccccccceeEeehhhhhhh--
Confidence            577999999999999997765 57789999999999999999999999876411           0133334443210  


Q ss_pred             cccccccccccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEe
Q 026513          138 NERVDGVVEDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGIS  194 (237)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis  194 (237)
                                     +  ......||+|.++| +.....+++.+.+.++.||.|.++
T Consensus       123 ---------------~--~~~~~~fDvIDiDP-fGs~~pfldsAi~a~~~~Gll~vT  161 (375)
T d2dula1         123 ---------------M--AERHRYFHFIDLDP-FGSPMEFLDTALRSAKRRGILGVT  161 (375)
T ss_dssp             ---------------H--HHSTTCEEEEEECC-SSCCHHHHHHHHHHEEEEEEEEEE
T ss_pred             ---------------h--HhhcCcCCcccCCC-CCCcHHHHHHHHHHhccCCEEEEE
Confidence                           0  01246799999998 444467889999999999999996

>d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Hypothetical methyltransferase PH1374
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.00  E-value=8e-09  Score=86.30  Aligned_cols=118  Identities=15%  Similarity=0.178  Sum_probs=89.6

Q ss_pred             ccCCCeEEEEcCcchHHHHHHHHh--CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccc
Q 026513           68 IKGGELFLDYGTGSGILGIAAIKF--GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVV  145 (237)
Q Consensus        68 ~~~~~~vLDlG~G~G~~~~~la~~--~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  145 (237)
                      .++|.+|||+++|+|+-+..++..  ....+++.|.++.-++..++++...++.+    +.+...|....          
T Consensus       114 ~~~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~~~~~----i~~~~~d~~~~----------  179 (313)
T d1ixka_         114 PKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLN----VILFHSSSLHI----------  179 (313)
T ss_dssp             CCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCS----EEEESSCGGGG----------
T ss_pred             CCccceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHHHHHHHHHhhc----ccccccccccc----------
Confidence            578999999999999998888754  45679999999999999999999999886    66667775421          


Q ss_pred             cccccccccCCCCCCceeEEEEeCCh-------------------------HHHHHHHHHHhHhcCCCeEEEEe-ccC-C
Q 026513          146 EDLSSHKIRGISQTEKYDVVIANILL-------------------------NPLLQLADHIVSYAKPGAVVGIS-GIL-S  198 (237)
Q Consensus       146 ~~~~~~~~~~~~~~~~fD~I~~n~~~-------------------------~~~~~~l~~~~~~L~~gG~liis-~~~-~  198 (237)
                                .....+||.|++++|-                         ....+++.++..+|+|||.|+.| |-+ .
T Consensus       180 ----------~~~~~~fD~ILvDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~gG~lVYsTCSl~~  249 (313)
T d1ixka_         180 ----------GELNVEFDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSLEP  249 (313)
T ss_dssp             ----------GGGCCCEEEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCCG
T ss_pred             ----------ccccccccEEEEccccccCCceeeccchhhhhhhhHHHHHHHHHHHHHHhhhheeCCCcEEEEeeccCCh
Confidence                      1125689999999981                         12346789999999999998887 433 3


Q ss_pred             CCHHHHHHHHh
Q 026513          199 EQLPHIINRYS  209 (237)
Q Consensus       199 ~~~~~~~~~~~  209 (237)
                      ++-+++...+.
T Consensus       250 eENE~VV~~~L  260 (313)
T d1ixka_         250 EENEFVIQWAL  260 (313)
T ss_dssp             GGTHHHHHHHH
T ss_pred             HhHHHHHHHHH
Confidence            33344444443

>d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RNA methyltransferase FtsJ
domain: RNA methyltransferase FtsJ
species: Escherichia coli [TaxId: 562]

Probab=98.94  E-value=5.2e-09  Score=80.60  Aligned_cols=124  Identities=14%  Similarity=0.178  Sum_probs=90.6

Q ss_pred             hccCCCeEEEEcCcchHHHHHHHHh--CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccc
Q 026513           67 LIKGGELFLDYGTGSGILGIAAIKF--GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGV  144 (237)
Q Consensus        67 ~~~~~~~vLDlG~G~G~~~~~la~~--~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~  144 (237)
                      +++++.+|||+||++|.++.++++.  +...++++|+.+.           .++.+    +.++++|..+....+.    
T Consensus        19 l~k~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~~-----------~~i~~----~~~~~~d~~~~~~~~~----   79 (180)
T d1ej0a_          19 LFKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPM-----------DPIVG----VDFLQGDFRDELVMKA----   79 (180)
T ss_dssp             CCCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCC-----------CCCTT----EEEEESCTTSHHHHHH----
T ss_pred             ccCCCCeEEEEeccCCcceEEEEeeccccceEEEeecccc-----------cccCC----ceEeecccccchhhhh----
Confidence            3678999999999999999988864  4578999998772           24444    7788888764221110    


Q ss_pred             ccccccccccCCCCCCceeEEEEeCCh--------H------HHHHHHHHHhHhcCCCeEEEEeccCCCCHHHHHHHHhh
Q 026513          145 VEDLSSHKIRGISQTEKYDVVIANILL--------N------PLLQLADHIVSYAKPGAVVGISGILSEQLPHIINRYSE  210 (237)
Q Consensus       145 ~~~~~~~~~~~~~~~~~fD~I~~n~~~--------~------~~~~~l~~~~~~L~~gG~liis~~~~~~~~~~~~~~~~  210 (237)
                              ........++|+|+++...        +      .....+.-+.+.|++||.+++--+......++...+..
T Consensus        80 --------~~~~~~~~~~DlVlSD~ap~~sg~~~~d~~~~~~L~~~~l~~a~~~Lk~gG~fV~K~F~g~~~~~l~~~l~~  151 (180)
T d1ej0a_          80 --------LLERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQGEGFDEYLREIRS  151 (180)
T ss_dssp             --------HHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESSTTHHHHHHHHHH
T ss_pred             --------hhhhccCcceeEEEecccchhcccchhHHHHHHHHHHHHHHhhhhccCCCCcEEEEEecCccHHHHHHHHHh
Confidence                    0011125689999998862        1      11244677889999999999998888888999999998


Q ss_pred             cccccee
Q 026513          211 FLEDILV  217 (237)
Q Consensus       211 ~~~~~~~  217 (237)
                      +|..+.+
T Consensus       152 ~F~~V~~  158 (180)
T d1ej0a_         152 LFTKVKV  158 (180)
T ss_dssp             HEEEEEE
T ss_pred             hcCEEEE
Confidence            8866654

>d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Bacillus subtilis, Ermc' [TaxId: 1423]

Probab=98.92  E-value=6.1e-09  Score=83.55  Aligned_cols=89  Identities=12%  Similarity=0.231  Sum_probs=70.0

Q ss_pred             ccCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccc
Q 026513           68 IKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVED  147 (237)
Q Consensus        68 ~~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  147 (237)
                      +.++++|||||||+|.+|..+++. ..+|+++|+++.+++.++++....  .    .+.++++|+.+..           
T Consensus        19 ~~~~d~VlEIGpG~G~LT~~Ll~~-~~~v~avE~D~~l~~~l~~~~~~~--~----n~~i~~~D~l~~~-----------   80 (235)
T d1qama_          19 LNEHDNIFEIGSGKGHFTLELVQR-CNFVTAIEIDHKLCKTTENKLVDH--D----NFQVLNKDILQFK-----------   80 (235)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHH-SSEEEEECSCHHHHHHHHHHTTTC--C----SEEEECCCGGGCC-----------
T ss_pred             CCCCCeEEEECCCchHHHHHHHhC-cCceEEEeeccchHHHHHHHhhcc--c----chhhhhhhhhhcc-----------
Confidence            468999999999999999999988 467999999999999998875432  2    3889999987422           


Q ss_pred             cccccccCCCCCCceeEEEEeCChHHHHHHHHHHhH
Q 026513          148 LSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVS  183 (237)
Q Consensus       148 ~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~  183 (237)
                              + +......|++|.|++....++.++..
T Consensus        81 --------~-~~~~~~~vv~NLPYnIss~il~~ll~  107 (235)
T d1qama_          81 --------F-PKNQSYKIFGNIPYNISTDIIRKIVF  107 (235)
T ss_dssp             --------C-CSSCCCEEEEECCGGGHHHHHHHHHH
T ss_pred             --------c-cccccceeeeeehhhhhHHHHHHHHh
Confidence                    1 12334568899999888888777653

>d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: NOL1R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.89  E-value=2.8e-08  Score=82.17  Aligned_cols=120  Identities=10%  Similarity=-0.001  Sum_probs=85.2

Q ss_pred             ccCCCeEEEEcCcchHHHHHHHHh--CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccc
Q 026513           68 IKGGELFLDYGTGSGILGIAAIKF--GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVV  145 (237)
Q Consensus        68 ~~~~~~vLDlG~G~G~~~~~la~~--~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  145 (237)
                      ..+|.+|||+++|+|+-+..++..  +..+++++|+++.-++..++++...++.+    +.+...|.....-        
T Consensus        92 ~~~g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~~~l~~~l~r~g~~~----~~~~~~d~~~~~~--------  159 (293)
T d2b9ea1          92 PPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSC----CELAEEDFLAVSP--------  159 (293)
T ss_dssp             CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCS----EEEEECCGGGSCT--------
T ss_pred             CCccceEEecccchhhHHHHHHHHhcCCceEeeecCCHHHHHHHHHHHHhcCccc----eeeeehhhhhhcc--------
Confidence            467999999999999988888753  56789999999999999999999999986    7777777653110        


Q ss_pred             cccccccccCCCCCCceeEEEEeCCh-----------------------H----HHHHHHHHHhHhcCCCeEEEEe-cc-
Q 026513          146 EDLSSHKIRGISQTEKYDVVIANILL-----------------------N----PLLQLADHIVSYAKPGAVVGIS-GI-  196 (237)
Q Consensus       146 ~~~~~~~~~~~~~~~~fD~I~~n~~~-----------------------~----~~~~~l~~~~~~L~~gG~liis-~~-  196 (237)
                               .....++||.|++++|-                       .    ....++..+. .++|||.|+.+ |- 
T Consensus       160 ---------~~~~~~~fD~VL~DaPCSg~G~~~r~p~~~~~~~~~~~~~~~l~~~Q~~il~~a~-~l~~gG~lvYsTCSl  229 (293)
T d2b9ea1         160 ---------SDPRYHEVHYILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHAL-TFPSLQRLVYSTCSL  229 (293)
T ss_dssp             ---------TCGGGTTEEEEEECCCCCC------------------CCHHHHHHHHHHHHHHHT-TCTTCCEEEEEESCC
T ss_pred             ---------cccccceeeEEeecCcccchhhhcccchhhccCCcchhhHHHHhhhhHHhHHHhh-hcccccEEEEeeccC
Confidence                     01112579999999981                       0    0123455555 47999988887 43 


Q ss_pred             CCCCHHHHHHHHh
Q 026513          197 LSEQLPHIINRYS  209 (237)
Q Consensus       197 ~~~~~~~~~~~~~  209 (237)
                      ..++-+++.+.+.
T Consensus       230 ~~~ENe~vV~~~L  242 (293)
T d2b9ea1         230 CQEENEDVVRDAL  242 (293)
T ss_dssp             CGGGTHHHHHHHH
T ss_pred             ChhHhHHHHHHHH
Confidence            3334445554444

>d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Escherichia coli [TaxId: 562]

Probab=98.88  E-value=4.2e-09  Score=82.83  Aligned_cols=99  Identities=19%  Similarity=0.156  Sum_probs=82.6

Q ss_pred             CCCeEEEEcCcchHHHHHHHH-hCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccccc
Q 026513           70 GGELFLDYGTGSGILGIAAIK-FGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDL  148 (237)
Q Consensus        70 ~~~~vLDlG~G~G~~~~~la~-~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~  148 (237)
                      ++.+++|+|||.|.-++.+|- .+..+++.+|.+..-+...++.....++.+    +++++..+.               
T Consensus        65 ~~~~ilDiGsGaG~PGi~laI~~p~~~~~Lves~~KK~~FL~~~~~~L~L~n----v~v~~~R~E---------------  125 (207)
T d1jsxa_          65 QGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLEN----IEPVQSRVE---------------  125 (207)
T ss_dssp             CSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSS----EEEEECCTT---------------
T ss_pred             cCCceeeeeccCCceeeehhhhcccceEEEEecchHHHHHHHHHHHHcCCcc----eeeeccchh---------------
Confidence            467999999999999999885 577899999999999999999999989886    888777765               


Q ss_pred             ccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEe
Q 026513          149 SSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGIS  194 (237)
Q Consensus       149 ~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis  194 (237)
                            ......+||+|++-.. ..+..++..+..+++++|.+++-
T Consensus       126 ------~~~~~~~fD~V~sRA~-~~~~~ll~~~~~~l~~~g~~~~~  164 (207)
T d1jsxa_         126 ------EFPSEPPFDGVISRAF-ASLNDMVSWCHHLPGEQGRFYAL  164 (207)
T ss_dssp             ------TSCCCSCEEEEECSCS-SSHHHHHHHHTTSEEEEEEEEEE
T ss_pred             ------hhccccccceehhhhh-cCHHHHHHHHHHhcCCCcEEEEE
Confidence                  2233568999998774 44567888899999999999985

>d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Chemotaxis receptor methyltransferase CheR, C-terminal domain
domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.88  E-value=1.5e-08  Score=78.78  Aligned_cols=125  Identities=13%  Similarity=0.162  Sum_probs=70.0

Q ss_pred             CCCeEEEEcCcchHH----HHHHHHh-C----CCeEEEEeCCHHHHHHHHHHHHHc----CCCCCcceEEeccCcc---c
Q 026513           70 GGELFLDYGTGSGIL----GIAAIKF-G----AAMSVGADIDPQAIKSAHQNAALN----NIGPKKMKLHLVPDRT---F  133 (237)
Q Consensus        70 ~~~~vLDlG~G~G~~----~~~la~~-~----~~~v~~vD~s~~~i~~a~~~~~~~----~~~~~~~~v~~~~~d~---~  133 (237)
                      +..+|+++|||+|.-    ++.+... .    .-+|+|+|+|+.+++.|++.....    ++......-.+...+.   .
T Consensus        24 ~~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~~g~y~~~~~~~~~~~~~~~yf~~~~~~~~~  103 (193)
T d1af7a2          24 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEG  103 (193)
T ss_dssp             SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCS
T ss_pred             CCeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhhcCcccHHHHhhhhHHHHhhceeecCCCccc
Confidence            345999999999953    3333332 1    136999999999999998643111    1100000000101000   0


Q ss_pred             cccccccccccccccccccccC-CCCCCceeEEEEeCChH-----HHHHHHHHHhHhcCCCeEEEEe
Q 026513          134 TASMNERVDGVVEDLSSHKIRG-ISQTEKYDVVIANILLN-----PLLQLADHIVSYAKPGAVVGIS  194 (237)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~fD~I~~n~~~~-----~~~~~l~~~~~~L~~gG~liis  194 (237)
                      ...+.+.+...+.-...+.+.. ..+.++||+|+|-.++.     ...++++++.+.|+|||+|+++
T Consensus       104 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~fDvI~CRNVLiYf~~~~~~~vl~~l~~~L~pGG~L~lG  170 (193)
T d1af7a2         104 LVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFAG  170 (193)
T ss_dssp             EEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEEC
T ss_pred             eeehHHHHHHHHHHhhhhccccccCCCCCccEEEeehhHHhcCHHHHHHHHHHHHHHhCCCcEEEEe
Confidence            0011111222222222233332 22357899999976653     3357899999999999999996

>d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: DNA methylase TaqI, N-terminal domain
domain: DNA methylase TaqI, N-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=98.86  E-value=3.1e-09  Score=83.76  Aligned_cols=120  Identities=18%  Similarity=0.166  Sum_probs=78.8

Q ss_pred             hHHHHHHHHHhhccCCCeEEEEcCcchHHHHHHHHh--CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccc
Q 026513           56 TTKLCLLLLRRLIKGGELFLDYGTGSGILGIAAIKF--GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTF  133 (237)
Q Consensus        56 ~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~la~~--~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~  133 (237)
                      ...++...+.  ..++.+|||.|||+|.+...+.+.  ....++|+|+++.+++.++             ...++.+|..
T Consensus         7 i~~~m~~l~~--~~~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~~~~-------------~~~~~~~~~~   71 (223)
T d2ih2a1           7 VVDFMVSLAE--APRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLPP-------------WAEGILADFL   71 (223)
T ss_dssp             HHHHHHHHCC--CCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCCT-------------TEEEEESCGG
T ss_pred             HHHHHHHhcC--CCCcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHhhcc-------------cceeeeeehh
Confidence            3444444432  357889999999999998877643  4567999999997654322             1445566654


Q ss_pred             cccccccccccccccccccccCCCCCCceeEEEEeCChH--------------------------------HHHHHHHHH
Q 026513          134 TASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLN--------------------------------PLLQLADHI  181 (237)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~~--------------------------------~~~~~l~~~  181 (237)
                      .                     .....+||+|++|||+.                                ....++..+
T Consensus        72 ~---------------------~~~~~~fd~ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~a  130 (223)
T d2ih2a1          72 L---------------------WEPGEAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKA  130 (223)
T ss_dssp             G---------------------CCCSSCEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHH
T ss_pred             c---------------------cccccccceecccCccccccccccccchhhhhhhhhhhhccccCCCcchHHHHHHHHH
Confidence            2                     22346899999999931                                123457888


Q ss_pred             hHhcCCCeEEEEe---ccC-CCCHHHHHHHHhhc
Q 026513          182 VSYAKPGAVVGIS---GIL-SEQLPHIINRYSEF  211 (237)
Q Consensus       182 ~~~L~~gG~liis---~~~-~~~~~~~~~~~~~~  211 (237)
                      .++|++||++.+.   .++ ......+.+.+.+.
T Consensus       131 l~~lk~~G~~~~I~p~~~l~~~~~~~lR~~l~~~  164 (223)
T d2ih2a1         131 VRLLKPGGVLVFVVPATWLVLEDFALLREFLARE  164 (223)
T ss_dssp             HHHEEEEEEEEEEEEGGGGTCGGGHHHHHHHHHH
T ss_pred             HHhcccCCceEEEEeeeeccCcchHHHHHHHHhc
Confidence            8999999998763   344 33344555555443

>d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Streptococcus pneumoniae, Ermam [TaxId: 1313]

Probab=98.84  E-value=2.8e-10  Score=92.06  Aligned_cols=114  Identities=15%  Similarity=0.262  Sum_probs=79.9

Q ss_pred             cccCCCCchhHHHHHHHHHhh-ccCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceE
Q 026513           47 LAFGSGEHATTKLCLLLLRRL-IKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKL  125 (237)
Q Consensus        47 ~~f~~g~~~~~~~~~~~l~~~-~~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v  125 (237)
                      ..||.........+...+... +.++.+|||||||+|.+|..+++. ..+|+++|+|+.+++.+++++...  .    ++
T Consensus         5 ~k~GQnFL~d~~ii~kIv~~~~~~~~d~VLEIGpG~G~LT~~L~~~-~~~v~aIE~D~~l~~~l~~~~~~~--~----n~   77 (245)
T d1yuba_           5 IKYSQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLFNLSSEKLKLN--T----RV   77 (245)
T ss_dssp             CCSCCCBCCCTTTHHHHHHHCCCCSSEEEEECSCCCSSCSHHHHHH-SSEEEESSSSCSSSSSSSCTTTTC--S----EE
T ss_pred             CCCCCcccCCHHHHHHHHHhcCCCCCCeEEEECCCccHHHHHHHhh-cCceeEeeecccchhhhhhhhhhc--c----ch
Confidence            344444433334444444432 467889999999999999999988 467999999999988877655322  2    48


Q ss_pred             EeccCccccccccccccccccccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCC
Q 026513          126 HLVPDRTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKP  187 (237)
Q Consensus       126 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~  187 (237)
                      .++++|+.+..                    .+...++.|++|.|++....++..+...-..
T Consensus        78 ~ii~~D~l~~~--------------------~~~~~~~~vv~NLPY~Ist~il~~~l~~~~~  119 (245)
T d1yuba_          78 TLIHQDILQFQ--------------------FPNKQRYKIVGNIPYHLSTQIIKKVVFESRA  119 (245)
T ss_dssp             EECCSCCTTTT--------------------CCCSSEEEEEEECCSSSCHHHHHHHHHHCCC
T ss_pred             hhhhhhhhccc--------------------cccceeeeEeeeeehhhhHHHHHHHhhhchh
Confidence            89999987422                    1245788899999998777776665543333

>d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Type I restriction enzyme StySJI M protein
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=98.83  E-value=1.6e-08  Score=87.90  Aligned_cols=135  Identities=20%  Similarity=0.238  Sum_probs=90.8

Q ss_pred             chhHHHHHHHHHhh--ccCCCeEEEEcCcchHHHHHHHHh----C----------CCeEEEEeCCHHHHHHHHHHHHHcC
Q 026513           54 HATTKLCLLLLRRL--IKGGELFLDYGTGSGILGIAAIKF----G----------AAMSVGADIDPQAIKSAHQNAALNN  117 (237)
Q Consensus        54 ~~~~~~~~~~l~~~--~~~~~~vLDlG~G~G~~~~~la~~----~----------~~~v~~vD~s~~~i~~a~~~~~~~~  117 (237)
                      +-|.+.+.+.+-..  ..++.+|+|.+||+|.+.+.+.++    .          ...+.|+|+++.+...|+.++...+
T Consensus       144 f~TP~~Iv~~mv~ll~~~~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n~~l~g  223 (425)
T d2okca1         144 YFTPRPLIQAMVDCINPQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHG  223 (425)
T ss_dssp             GCCCHHHHHHHHHHHCCCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTT
T ss_pred             hccchhhhHhhheeccCcccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhhhhhcC
Confidence            33344444444333  245789999999999999887643    1          1248999999999999999998887


Q ss_pred             CCCCcceEEeccCccccccccccccccccccccccccCCCCCCceeEEEEeCChH--------------------HHHHH
Q 026513          118 IGPKKMKLHLVPDRTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLN--------------------PLLQL  177 (237)
Q Consensus       118 ~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~~--------------------~~~~~  177 (237)
                      .....  ..+..+|...                     .....+||+|++|||+.                    ....+
T Consensus       224 ~~~~~--~~i~~~d~l~---------------------~~~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~~~~F  280 (425)
T d2okca1         224 IGTDR--SPIVCEDSLE---------------------KEPSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNF  280 (425)
T ss_dssp             CCSSC--CSEEECCTTT---------------------SCCSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHH
T ss_pred             Ccccc--ceeecCchhh---------------------hhcccccceEEecCCCCCCccccchhhhhhcccccccHHHHH
Confidence            65432  2233455431                     12356899999999962                    12347


Q ss_pred             HHHHhHhcCCCeEEEEe---ccC-CCC-HHHHHHHHhhc
Q 026513          178 ADHIVSYAKPGAVVGIS---GIL-SEQ-LPHIINRYSEF  211 (237)
Q Consensus       178 l~~~~~~L~~gG~liis---~~~-~~~-~~~~~~~~~~~  211 (237)
                      +..+..+|++||.+.+.   +++ ... ...+.+.+...
T Consensus       281 i~~~~~~Lk~~G~~~iI~p~~~L~~~~~~~~iR~~Ll~~  319 (425)
T d2okca1         281 LQHMMLMLKTGGRAAVVLPDNVLFEAGAGETIRKRLLQD  319 (425)
T ss_dssp             HHHHHHHEEEEEEEEEEEEHHHHHCSTHHHHHHHHHHHH
T ss_pred             HHHHHHhcCCCCeEEEEechHHhhhhhhHHHHHHHHHHh
Confidence            89999999999987763   343 333 34566666544

>d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Chalcone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.72  E-value=8.8e-08  Score=77.04  Aligned_cols=94  Identities=17%  Similarity=0.188  Sum_probs=71.3

Q ss_pred             cCCCeEEEEcCcchHHHHHHHH-hCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccc
Q 026513           69 KGGELFLDYGTGSGILGIAAIK-FGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVED  147 (237)
Q Consensus        69 ~~~~~vLDlG~G~G~~~~~la~-~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  147 (237)
                      ....+|+|||||+|.+++.+++ ++..+++..|..+ .++.       .+...   +++++.+|.+++            
T Consensus        80 ~~~~~vlDiGGG~G~~~~~l~~~~P~l~~~v~Dlp~-vi~~-------~~~~~---ri~~~~gd~~~~------------  136 (244)
T d1fp1d2          80 EGISTLVDVGGGSGRNLELIISKYPLIKGINFDLPQ-VIEN-------APPLS---GIEHVGGDMFAS------------  136 (244)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHH-HHTT-------CCCCT---TEEEEECCTTTC------------
T ss_pred             cCCcEEEEecCCCcHHHHHHHHHCCCCeEEEecchh-hhhc-------cCCCC---CeEEecCCcccc------------
Confidence            3457899999999999999885 5788899999843 4432       22222   588899998731            


Q ss_pred             cccccccCCCCCCceeEEEEeCChHHH-----HHHHHHHhHhcCCCeEEEEecc
Q 026513          148 LSSHKIRGISQTEKYDVVIANILLNPL-----LQLADHIVSYAKPGAVVGISGI  196 (237)
Q Consensus       148 ~~~~~~~~~~~~~~fD~I~~n~~~~~~-----~~~l~~~~~~L~~gG~liis~~  196 (237)
                                 ....|++++...+|..     ..+++++.+.|+|||.++|.+.
T Consensus       137 -----------~p~~D~~~l~~vLh~~~de~~~~iL~~~~~aL~pgg~llI~e~  179 (244)
T d1fp1d2         137 -----------VPQGDAMILKAVCHNWSDEKCIEFLSNCHKALSPNGKVIIVEF  179 (244)
T ss_dssp             -----------CCCEEEEEEESSGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             -----------cccceEEEEehhhhhCCHHHHHHHHHHHHHHcCCCcEEEEEEE
Confidence                       2356999998777554     4689999999999999999765

>d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Probable dimethyladenosine transferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.65  E-value=9.3e-08  Score=78.23  Aligned_cols=91  Identities=14%  Similarity=0.310  Sum_probs=72.7

Q ss_pred             ccCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccc
Q 026513           68 IKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVED  147 (237)
Q Consensus        68 ~~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  147 (237)
                      +.++..|||+|+|.|.+|..+++.+ .+++++|+|+..++..++.+.......   ++.++.+|+....           
T Consensus        19 ~~~~d~VlEIGPG~G~LT~~Ll~~~-~~v~aiE~D~~l~~~L~~~~~~~~~~~---~~~~i~~D~l~~~-----------   83 (278)
T d1zq9a1          19 LRPTDVVLEVGPGTGNMTVKLLEKA-KKVVACELDPRLVAELHKRVQGTPVAS---KLQVLVGDVLKTD-----------   83 (278)
T ss_dssp             CCTTCEEEEECCTTSTTHHHHHHHS-SEEEEEESCHHHHHHHHHHHTTSTTGG---GEEEEESCTTTSC-----------
T ss_pred             CCCCCEEEEECCCchHHHHHHHhcC-CcEEEEEEccchhHHHHHHHhhhcccc---chhhhHHHHhhhh-----------
Confidence            4578899999999999999999885 689999999999999998876544322   4888899986321           


Q ss_pred             cccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHh
Q 026513          148 LSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSY  184 (237)
Q Consensus       148 ~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~  184 (237)
                                 -..++.||+|.|+.....++..+...
T Consensus        84 -----------~~~~~~vV~NLPY~Iss~il~~~~~~  109 (278)
T d1zq9a1          84 -----------LPFFDTCVANLPYQISSPFVFKLLLH  109 (278)
T ss_dssp             -----------CCCCSEEEEECCGGGHHHHHHHHHHC
T ss_pred             -----------hhhhhhhhcchHHHHHHHHHHHHHhh
Confidence                       23467899999999888887776654

>d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Bacillus subtilis [TaxId: 1423]

Probab=98.63  E-value=2.3e-07  Score=74.11  Aligned_cols=103  Identities=17%  Similarity=0.144  Sum_probs=81.3

Q ss_pred             CCCeEEEEcCcchHHHHHHHH-hCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccccc
Q 026513           70 GGELFLDYGTGSGILGIAAIK-FGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDL  148 (237)
Q Consensus        70 ~~~~vLDlG~G~G~~~~~la~-~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~  148 (237)
                      .+.+++|+|||.|.-++.++- .+..+++.+|.+..-+.-.+......++++    +.+++..+.+..            
T Consensus        70 ~~~~ilDiGSGaGfPGi~laI~~p~~~v~Lves~~KK~~FL~~v~~~L~L~n----~~i~~~R~E~~~------------  133 (239)
T d1xdza_          70 QVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLEN----TTFCHDRAETFG------------  133 (239)
T ss_dssp             GCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSS----EEEEESCHHHHT------------
T ss_pred             CCCeEEeecCCCchHHHHHHHhCCCccceeecchHHHHHHHHHHHHHhCCCC----cEEEeehhhhcc------------
Confidence            467899999999999999885 678899999999999999999888889987    767666553210            


Q ss_pred             ccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEe
Q 026513          149 SSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGIS  194 (237)
Q Consensus       149 ~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis  194 (237)
                           ......++||+|++-.+. .+..++..+..++++||.+++-
T Consensus       134 -----~~~~~~~~~D~v~sRAva-~l~~ll~~~~~~l~~~g~~i~~  173 (239)
T d1xdza_         134 -----QRKDVRESYDIVTARAVA-RLSVLSELCLPLVKKNGLFVAL  173 (239)
T ss_dssp             -----TCTTTTTCEEEEEEECCS-CHHHHHHHHGGGEEEEEEEEEE
T ss_pred             -----ccccccccceEEEEhhhh-CHHHHHHHHhhhcccCCEEEEE
Confidence                 011114689999997743 4567888899999999999884

>d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermus thermophilus [TaxId: 274]

Probab=98.59  E-value=1.8e-07  Score=71.88  Aligned_cols=120  Identities=17%  Similarity=0.211  Sum_probs=86.1

Q ss_pred             ccCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccc
Q 026513           68 IKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVED  147 (237)
Q Consensus        68 ~~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  147 (237)
                      +.+|..++|..+|.|..+..+... ..+|+|+|.++.+++.|++..    ..    ++.+++++..+..      +.+. 
T Consensus        16 ~~~g~~~vD~T~G~GGhs~~iL~~-~~~viaiD~D~~ai~~a~~~~----~~----~~~~~~~~f~~~~------~~l~-   79 (182)
T d1wg8a2          16 VRPGGVYVDATLGGAGHARGILER-GGRVIGLDQDPEAVARAKGLH----LP----GLTVVQGNFRHLK------RHLA-   79 (182)
T ss_dssp             CCTTCEEEETTCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHHTC----CT----TEEEEESCGGGHH------HHHH-
T ss_pred             CCCCCEEEEeCCCCcHHHHHHhcc-cCcEEEEhhhhhHHHHHhhcc----cc----ceeEeehHHHHHH------HHHH-
Confidence            578899999999999999988876 468999999999999887641    12    3777777764211      1111 


Q ss_pred             cccccccCCCCCCceeEEEEeCCh------------HHHHHHHHHHhHhcCCCeEEEEeccCCCCHHHHHHHHhhc
Q 026513          148 LSSHKIRGISQTEKYDVVIANILL------------NPLLQLADHIVSYAKPGAVVGISGILSEQLPHIINRYSEF  211 (237)
Q Consensus       148 ~~~~~~~~~~~~~~fD~I~~n~~~------------~~~~~~l~~~~~~L~~gG~liis~~~~~~~~~~~~~~~~~  211 (237)
                             . ...+++|.|+.+...            ......+......|++||.+++..+.+.+...+...+++.
T Consensus        80 -------~-~~~~~vdgIl~DLGvSs~qld~~~re~~~~~~~L~~~~~~lk~gg~~~ii~fhs~Ed~ivk~~~~e~  147 (182)
T d1wg8a2          80 -------A-LGVERVDGILADLGVSSFHLDDPSDELNALKEFLEQAAEVLAPGGRLVVIAFHSLEDRVVKRFLRES  147 (182)
T ss_dssp             -------H-TTCSCEEEEEEECSCCHHHHHCGGTHHHHHHHHHHHHHHHEEEEEEEEEEECSHHHHHHHHHHHHHH
T ss_pred             -------H-cCCCccCEEEEEccCCHHHhhcchHHHHHHHHHHHHHHhhhCCCCeEEEEecccchhHHHHHHHhhc
Confidence                   1 124679999998753            2233467888899999999999887665555566666543

>d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: M.EcoKI
species: Escherichia coli [TaxId: 562]

Probab=98.58  E-value=9.8e-08  Score=84.95  Aligned_cols=142  Identities=18%  Similarity=0.187  Sum_probs=88.1

Q ss_pred             CCchhHHHHHHHHHhh--ccCCCeEEEEcCcchHHHHHHHHh----C---------------CCeEEEEeCCHHHHHHHH
Q 026513           52 GEHATTKLCLLLLRRL--IKGGELFLDYGTGSGILGIAAIKF----G---------------AAMSVGADIDPQAIKSAH  110 (237)
Q Consensus        52 g~~~~~~~~~~~l~~~--~~~~~~vLDlG~G~G~~~~~la~~----~---------------~~~v~~vD~s~~~i~~a~  110 (237)
                      |.+-|.+.+.+.+-..  ..++.+|+|.+||+|.+.+.+.++    .               ...++|+|+++.+...|+
T Consensus       144 GqfyTP~~Iv~~mv~ll~~~~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~~la~  223 (524)
T d2ar0a1         144 GQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLAL  223 (524)
T ss_dssp             -CCCCCHHHHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHH
T ss_pred             chhccccchhHhhhhcccCccchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHHHHHH
Confidence            4444455555555443  345779999999999998876542    1               125899999999999999


Q ss_pred             HHHHHcCCCCCcceEEeccCccccccccccccccccccccccccCCCCCCceeEEEEeCChHH-----------------
Q 026513          111 QNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLNP-----------------  173 (237)
Q Consensus       111 ~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~~~-----------------  173 (237)
                      -++...+...     .+...+....      .+.+       ........+||+|++|||+..                 
T Consensus       224 ~nl~l~~~~~-----~i~~~~~~~~------~~~l-------~~d~~~~~kfD~Ii~NPPfg~~~~~~~~~~~~~~~~~~  285 (524)
T d2ar0a1         224 MNCLLHDIEG-----NLDHGGAIRL------GNTL-------GSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNK  285 (524)
T ss_dssp             HHHHTTTCCC-----BGGGTBSEEE------SCTT-------SHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCH
T ss_pred             HHHHhhcccc-----cccccchhhh------hhhh-------hhcccccccceeEEecCCccccccccchhhhccccccc
Confidence            9988776542     1112221100      0000       000112468999999999621                 


Q ss_pred             HHHHHHHHhHhcCCCeEEEEe---ccC-CCC-HHHHHHHHhhc
Q 026513          174 LLQLADHIVSYAKPGAVVGIS---GIL-SEQ-LPHIINRYSEF  211 (237)
Q Consensus       174 ~~~~l~~~~~~L~~gG~liis---~~~-~~~-~~~~~~~~~~~  211 (237)
                      ...++..+...|++||++.+.   +++ ... ...+.+.+.+.
T Consensus       286 ~~~Fi~~~l~~Lk~gGr~aiIlP~~~Lf~~~~~~~iR~~Ll~~  328 (524)
T d2ar0a1         286 QLCFMQHIIETLHPGGRAAVVVPDNVLFEGGKGTDIRRDLMDK  328 (524)
T ss_dssp             HHHHHHHHHHHEEEEEEEEEEEEHHHHHCCTHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHhccccCcEEEEEehHHhhhhhhhHHHHHHHHHc
Confidence            124789999999999987763   443 333 34566666544

>d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: High level kasugamycin resistance protein KsgA
species: Escherichia coli [TaxId: 562]

Probab=98.35  E-value=1.4e-07  Score=76.16  Aligned_cols=94  Identities=17%  Similarity=0.137  Sum_probs=68.5

Q ss_pred             ccCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccc
Q 026513           68 IKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVED  147 (237)
Q Consensus        68 ~~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  147 (237)
                      +.++..|||||||.|.+|..+++.+ .+++++|+|+..++..++.....+      ++.++.+|+.+....+.       
T Consensus        19 ~~~~d~vlEIGpG~G~LT~~Ll~~~-~~v~aiEiD~~l~~~L~~~~~~~~------~~~ii~~D~l~~~~~~~-------   84 (252)
T d1qyra_          19 PQKGQAMVEIGPGLAALTEPVGERL-DQLTVIELDRDLAARLQTHPFLGP------KLTIYQQDAMTFNFGEL-------   84 (252)
T ss_dssp             CCTTCCEEEECCTTTTTHHHHHTTC-SCEEEECCCHHHHHHHHTCTTTGG------GEEEECSCGGGCCHHHH-------
T ss_pred             CCCCCEEEEECCCchHHHHHHHccC-CceEEEEeccchhHHHHHHhhhcc------chhHHhhhhhhhccccc-------
Confidence            4578899999999999999999874 679999999999998876433221      48899999875332210       


Q ss_pred             cccccccCCCCCCceeEEEEeCChHHHHHHHHHHhH
Q 026513          148 LSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVS  183 (237)
Q Consensus       148 ~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~  183 (237)
                              ....++.-.|+.|.|++....++..+..
T Consensus        85 --------~~~~~~~~~vvgNlPY~Iss~Il~~l~~  112 (252)
T d1qyra_          85 --------AEKMGQPLRVFGNLPYNISTPLMFHLFS  112 (252)
T ss_dssp             --------HHHHTSCEEEEEECCTTTHHHHHHHHHT
T ss_pred             --------ccccCCCeEEEecchHHHHHHHHHHhcc
Confidence                    0001233478899999888888766643

>d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Isoflavone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.34  E-value=6.9e-07  Score=71.65  Aligned_cols=93  Identities=20%  Similarity=0.246  Sum_probs=70.2

Q ss_pred             CCCeEEEEcCcchHHHHHHHH-hCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccccc
Q 026513           70 GGELFLDYGTGSGILGIAAIK-FGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDL  148 (237)
Q Consensus        70 ~~~~vLDlG~G~G~~~~~la~-~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~  148 (237)
                      ...+|+|+|||+|.++..+++ ++..+++..|.. ..++.+       +...   ++.++.+|.+++             
T Consensus        80 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp-~vi~~~-------~~~~---rv~~~~gD~f~~-------------  135 (244)
T d1fp2a2          80 GLESIVDVGGGTGTTAKIICETFPKLKCIVFDRP-QVVENL-------SGSN---NLTYVGGDMFTS-------------  135 (244)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECH-HHHTTC-------CCBT---TEEEEECCTTTC-------------
T ss_pred             CceEEEEecCCccHHHHHHHHhCCCCeEEEecCH-HHHHhC-------cccC---ceEEEecCcccC-------------
Confidence            446899999999999999885 577899999984 344432       2222   588999998731             


Q ss_pred             ccccccCCCCCCceeEEEEeCChHHH-----HHHHHHHhHhcCCC---eEEEEecc
Q 026513          149 SSHKIRGISQTEKYDVVIANILLNPL-----LQLADHIVSYAKPG---AVVGISGI  196 (237)
Q Consensus       149 ~~~~~~~~~~~~~fD~I~~n~~~~~~-----~~~l~~~~~~L~~g---G~liis~~  196 (237)
                                ...+|++++.-.+|..     .++++++.+.|+||   |+++|.+.
T Consensus       136 ----------~p~aD~~~l~~vLHdw~d~~~~~iL~~~~~al~pgg~~~~lli~e~  181 (244)
T d1fp2a2         136 ----------IPNADAVLLKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDM  181 (244)
T ss_dssp             ----------CCCCSEEEEESCGGGSCHHHHHHHHHHHHHHHSGGGCCCEEEEEEC
T ss_pred             ----------CCCCcEEEEEeecccCChHHHHHHHHHHHHHcCcccCCcEEEEEEe
Confidence                      2367999998777654     46899999999998   77777544

>d1o9ga_ c.66.1.29 (A:) rRNA methyltransferase AviRa {Streptomyces viridochromogenes [TaxId: 1938]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase AviRa
domain: rRNA methyltransferase AviRa
species: Streptomyces viridochromogenes [TaxId: 1938]

Probab=98.19  E-value=7.8e-07  Score=71.33  Aligned_cols=108  Identities=17%  Similarity=0.172  Sum_probs=77.7

Q ss_pred             CCCeEEEEcCcchHHHHHHHHhCC-----------------------------------------CeEEEEeCCHHHHHH
Q 026513           70 GGELFLDYGTGSGILGIAAIKFGA-----------------------------------------AMSVGADIDPQAIKS  108 (237)
Q Consensus        70 ~~~~vLDlG~G~G~~~~~la~~~~-----------------------------------------~~v~~vD~s~~~i~~  108 (237)
                      ++..++|..||+|++.+.++....                                         ..++|.|+++.+++.
T Consensus        50 ~~~~LlDPmCGSGTilIEAAlia~niaPGl~R~f~fe~w~~~~~~~w~~l~~~a~~~~~~~~~~~~~i~G~D~d~~ai~~  129 (249)
T d1o9ga_          50 GPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAAQA  129 (249)
T ss_dssp             SCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred             CCCceeccccCccHHHHHHHHHHhCcCcCcccchhhhcccccCHHHHHHHHHHHHHHHhccccccCCccccccCHHHHHH
Confidence            345799999999999988764210                                         136789999999998


Q ss_pred             H---HHHHHHcCCCCCcceEEeccCccccccccccccccccccccccccCCCCCCceeEEEEeCCh------------HH
Q 026513          109 A---HQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILL------------NP  173 (237)
Q Consensus       109 a---~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~------------~~  173 (237)
                      |   ++|+...++..   .+.+.+.|+++...               .........+++|++|||+            ..
T Consensus       130 A~~~r~n~~~Agl~~---~i~i~~~d~f~~~~---------------~~~~~~~~~~GlIVtNPPYGERl~~~~~~~~~~  191 (249)
T d1o9ga_         130 ARRLRERLTAEGGAL---PCAIRTADVFDPRA---------------LSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQP  191 (249)
T ss_dssp             HHHHHHHHHHTTSSC---CEEEEECCTTCGGG---------------HHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHH
T ss_pred             HHHHHHHHHHcCCCc---eeeeeecchhccCc---------------chhccCCCCCCEEEeCCCccccccccccchHHH
Confidence            8   46888888875   47888888874220               1112234578999999995            34


Q ss_pred             HHHHHHHHhHhcCCCeEEEEec
Q 026513          174 LLQLADHIVSYAKPGAVVGISG  195 (237)
Q Consensus       174 ~~~~l~~~~~~L~~gG~liis~  195 (237)
                      +.++...+.+.++....++++.
T Consensus       192 ~~~~~~~l~~~~p~~s~~~it~  213 (249)
T d1o9ga_         192 VAGLLRSLASALPAHAVIAVTD  213 (249)
T ss_dssp             HHHHHHHHHHHSCTTCEEEEEE
T ss_pred             HHHHHHHHHccCCCCcEEEEeC
Confidence            5677888888887777777763

>d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.13  E-value=3.4e-06  Score=67.40  Aligned_cols=92  Identities=16%  Similarity=0.190  Sum_probs=65.6

Q ss_pred             CCeEEEEcCcchHHHHHHHH-hCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccccc
Q 026513           71 GELFLDYGTGSGILGIAAIK-FGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDLS  149 (237)
Q Consensus        71 ~~~vLDlG~G~G~~~~~la~-~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~  149 (237)
                      ..+|+|+|||+|.+++.+++ ++..++++.|..+. ++.+       ....   ++.++.+|++++              
T Consensus        82 ~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~v-i~~~-------~~~~---r~~~~~~d~~~~--------------  136 (243)
T d1kyza2          82 LKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPHV-IEDA-------PSYP---GVEHVGGDMFVS--------------  136 (243)
T ss_dssp             CSEEEEETCTTSHHHHHHHHHCTTSEEEEEECTTT-TTTC-------CCCT---TEEEEECCTTTC--------------
T ss_pred             CcEEEEecCCCcHHHHHHHHHCCCCeEEEcccHHh-hhhc-------ccCC---ceEEeccccccc--------------
Confidence            46899999999999999885 57889999999763 3222       1122   488889988741              


Q ss_pred             cccccCCCCCCceeEEEEeCCh-----HHHHHHHHHHhHhcCCCeEEEEecc
Q 026513          150 SHKIRGISQTEKYDVVIANILL-----NPLLQLADHIVSYAKPGAVVGISGI  196 (237)
Q Consensus       150 ~~~~~~~~~~~~fD~I~~n~~~-----~~~~~~l~~~~~~L~~gG~liis~~  196 (237)
                             .+  ..|+++....+     .....+++++.+.|+|||.+++.+.
T Consensus       137 -------~P--~ad~~~l~~vlh~~~d~~~~~iL~~~~~al~pgg~~li~d~  179 (243)
T d1kyza2         137 -------IP--KADAVFMKWICHDWSDEHCLKFLKNCYEALPDNGKVIVAEC  179 (243)
T ss_dssp             -------CC--CCSCEECSSSSTTSCHHHHHHHHHHHHHHCCSSSCEEEEEC
T ss_pred             -------CC--CcceEEEEEEeecCCHHHHHHHHHHHHHhcCCCceEEEEEE
Confidence                   11  24555543333     3345789999999999999988644

>d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap methylase
domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5
species: Dengue virus 2 [TaxId: 11060]

Probab=98.12  E-value=2e-05  Score=62.55  Aligned_cols=120  Identities=10%  Similarity=0.033  Sum_probs=70.3

Q ss_pred             hccCCCeEEEEcCcchHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccc
Q 026513           67 LIKGGELFLDYGTGSGILGIAAIKF-GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVV  145 (237)
Q Consensus        67 ~~~~~~~vLDlG~G~G~~~~~la~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  145 (237)
                      .++++.+|+|+|||+|..+.+++.. ....+.|+++--..        ...+..     ......+..            
T Consensus        63 ~~~~~~~vvDlG~~pGgws~~~a~~~~v~~V~g~~iG~d~--------~e~P~~-----~~~~~~ni~------------  117 (257)
T d2p41a1          63 LVTPEGKVVDLGCGRGGWSYYCGGLKNVREVKGLTKGGPG--------HEEPIP-----MSTYGWNLV------------  117 (257)
T ss_dssp             SSCCCEEEEEETCTTSHHHHHHHTSTTEEEEEEECCCSTT--------SCCCCC-----CCSTTGGGE------------
T ss_pred             CccCCCeEEEecCCCChHHHHHHhhcCCCceeEEEecCcc--------ccCCcc-----ccccccccc------------
Confidence            4677889999999999999999866 34567787773210        000110     111011111            


Q ss_pred             cccccccccCCCCCCceeEEEEeCCh-------HHH--HHHHHHHhHhcCCCeEEEEecc--CCCCHHHHHHHHhhcc
Q 026513          146 EDLSSHKIRGISQTEKYDVVIANILL-------NPL--LQLADHIVSYAKPGAVVGISGI--LSEQLPHIINRYSEFL  212 (237)
Q Consensus       146 ~~~~~~~~~~~~~~~~fD~I~~n~~~-------~~~--~~~l~~~~~~L~~gG~liis~~--~~~~~~~~~~~~~~~~  212 (237)
                      +.....++.. .+.+++|+|+|+..-       +..  .++++.+...|+|||.+++--+  ..++.-+.+..+...|
T Consensus       118 ~~~~~~dv~~-l~~~~~D~vlcDm~ess~~~~vd~~Rtl~vLela~~wLk~gg~FvvKVl~py~~~v~e~le~lq~~f  194 (257)
T d2p41a1         118 RLQSGVDVFF-IPPERCDTLLCDIGESSPNPTVEAGRTLRVLNLVENWLSNNTQFCVKVLNPYMSSVIEKMEALQRKH  194 (257)
T ss_dssp             EEECSCCTTT-SCCCCCSEEEECCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEESCCCSHHHHHHHHHHHHHH
T ss_pred             cchhhhhHHh-cCCCcCCEEEeeCCCCCCCchhhhhhHHHHHHHHHHHcccCCEEEEEECCCCChHHHHHHHHHHHHh
Confidence            1111111112 235789999998742       222  2568888899999999888633  3444555555655544

>d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CmcI-like
domain: Cephalosporin hydroxylase CmcI
species: Streptomyces clavuligerus [TaxId: 1901]

Probab=98.07  E-value=4.2e-06  Score=66.40  Aligned_cols=114  Identities=8%  Similarity=0.003  Sum_probs=69.2

Q ss_pred             hhHHHHHHHHHhhccCCCeEEEEcCcchHHHHHHHH----h-CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEecc
Q 026513           55 ATTKLCLLLLRRLIKGGELFLDYGTGSGILGIAAIK----F-GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVP  129 (237)
Q Consensus        55 ~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~la~----~-~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~  129 (237)
                      |....+.+.+-...+ .++|||+|++.|.-++.++.    . ...+++++|+++.....+.     ....    ++.+++
T Consensus        66 p~d~~~~~eli~~~K-Pk~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~~~~-----~~~~----~I~~i~  135 (232)
T d2bm8a1          66 PDTQAVYHDMLWELR-PRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPA-----SDME----NITLHQ  135 (232)
T ss_dssp             HHHHHHHHHHHHHHC-CSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCG-----GGCT----TEEEEE
T ss_pred             HHHHHHHHHHHHHhC-CCEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhhhhh-----cccc----ceeeee
Confidence            444444444433334 45899999999977666553    2 3578999999875433221     1122    388888


Q ss_pred             CccccccccccccccccccccccccCCCCCCceeEEEEeCChHHHH---HHHHHHhHhcCCCeEEEEecc
Q 026513          130 DRTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLNPLL---QLADHIVSYAKPGAVVGISGI  196 (237)
Q Consensus       130 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~~~~~---~~l~~~~~~L~~gG~liis~~  196 (237)
                      +|..+....               ..+ ....+|+|+.+.. |...   .-+ .+..+|++||++++.+.
T Consensus       136 gDs~~~~~~---------------~~l-~~~~~dlIfID~~-H~~~~v~~~~-~~~~lLk~GG~iIveD~  187 (232)
T d2bm8a1         136 GDCSDLTTF---------------EHL-REMAHPLIFIDNA-HANTFNIMKW-AVDHLLEEGDYFIIEDM  187 (232)
T ss_dssp             CCSSCSGGG---------------GGG-SSSCSSEEEEESS-CSSHHHHHHH-HHHHTCCTTCEEEECSC
T ss_pred             cccccHHHH---------------HHH-HhcCCCEEEEcCC-cchHHHHHHH-HHhcccCcCCEEEEEcC
Confidence            987642211               111 1346889998765 2222   112 24579999999999765

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=97.86  E-value=3.1e-05  Score=58.41  Aligned_cols=105  Identities=21%  Similarity=0.276  Sum_probs=69.5

Q ss_pred             hccCCCeEEEEcCcc-hHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccc
Q 026513           67 LIKGGELFLDYGTGS-GILGIAAIKF-GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGV  144 (237)
Q Consensus        67 ~~~~~~~vLDlG~G~-G~~~~~la~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~  144 (237)
                      .+++|.+|+-+|||. |..++.+++. |..+|+++|.++.-++.|++.    |...   -+.....++.+          
T Consensus        24 ~~~~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~~l----Ga~~---~i~~~~~~~~~----------   86 (174)
T d1jqba2          24 DIEMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKFY----GATD---ILNYKNGHIED----------   86 (174)
T ss_dssp             TCCTTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHHHH----TCSE---EECGGGSCHHH----------
T ss_pred             CCCCCCEEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHHHhh----Cccc---cccccchhHHH----------
Confidence            468899999999997 7888888875 677899999999988888753    4321   01111111110          


Q ss_pred             ccccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEeccCC
Q 026513          145 VEDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILS  198 (237)
Q Consensus       145 ~~~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~~~~  198 (237)
                             .+........+|+||-.....   ..++...+.++|+|.+++.++..
T Consensus        87 -------~v~~~t~g~G~D~vid~~g~~---~~~~~a~~~~~~~G~iv~~G~~~  130 (174)
T d1jqba2          87 -------QVMKLTNGKGVDRVIMAGGGS---ETLSQAVKMVKPGGIISNINYHG  130 (174)
T ss_dssp             -------HHHHHTTTSCEEEEEECSSCT---THHHHHHHHEEEEEEEEECCCCC
T ss_pred             -------HHHHHhhccCcceEEEccCCH---HHHHHHHHHHhcCCEEEEEeecC
Confidence                   111222345699998765332   34466778999999999976643

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=97.80  E-value=7.2e-05  Score=55.70  Aligned_cols=110  Identities=18%  Similarity=0.201  Sum_probs=67.8

Q ss_pred             hccCCCeEEEEcCcc-hHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccc
Q 026513           67 LIKGGELFLDYGTGS-GILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVV  145 (237)
Q Consensus        67 ~~~~~~~vLDlG~G~-G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  145 (237)
                      .+++|.+||-+|||. |.++..+++....+|+++|.++.-++.|++.    +...    .........+      ..+.+
T Consensus        23 ~~~~g~~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~~~r~~~a~~~----ga~~----~~~~~~~~~~------~~~~~   88 (170)
T d1e3ja2          23 GVQLGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKNC----GADV----TLVVDPAKEE------ESSII   88 (170)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHT----TCSE----EEECCTTTSC------HHHHH
T ss_pred             CCCCCCEEEEEcccccchhhHhhHhhhcccccccchHHHHHHHHHHc----CCcE----EEeccccccc------cchhh
Confidence            367899999999995 6777777765445899999999998888764    3221    1111110000      00000


Q ss_pred             cccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEeccCCC
Q 026513          146 EDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILSE  199 (237)
Q Consensus       146 ~~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~~~~~  199 (237)
                      +.     +.. .....+|+|+-.....   ..++.+.++++++|.+++.+....
T Consensus        89 ~~-----~~~-~~g~g~D~vid~~g~~---~~~~~a~~~~~~~G~iv~~G~~~~  133 (170)
T d1e3ja2          89 ER-----IRS-AIGDLPNVTIDCSGNE---KCITIGINITRTGGTLMLVGMGSQ  133 (170)
T ss_dssp             HH-----HHH-HSSSCCSEEEECSCCH---HHHHHHHHHSCTTCEEEECSCCSS
T ss_pred             hh-----hhc-ccccCCceeeecCCCh---HHHHHHHHHHhcCCceEEEecCCC
Confidence            00     000 1135789998655332   345667889999999999776543

>d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Transcription factor sc-mtTFB
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.75  E-value=6.7e-05  Score=62.12  Aligned_cols=81  Identities=11%  Similarity=0.048  Sum_probs=58.5

Q ss_pred             cccCCCCchhHHHHHHHHHhh-c------cCCCeEEEEcCcchHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHHcCC
Q 026513           47 LAFGSGEHATTKLCLLLLRRL-I------KGGELFLDYGTGSGILGIAAIKF-GAAMSVGADIDPQAIKSAHQNAALNNI  118 (237)
Q Consensus        47 ~~f~~g~~~~~~~~~~~l~~~-~------~~~~~vLDlG~G~G~~~~~la~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~  118 (237)
                      -.||...-.....+...+... +      ..+..|||+|+|.|.+|..+... ...+++++|+++..++..++....   
T Consensus        13 k~~GQnfL~d~~i~~~Iv~~~~l~~~~~~~~~~~VlEIGPG~G~LT~~Ll~~~~~~~v~~iE~D~~~~~~L~~~~~~---   89 (322)
T d1i4wa_          13 FFYGFKYLWNPTVYNKIFDKLDLTKTYKHPEELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKFEG---   89 (322)
T ss_dssp             CGGGCCCBCCHHHHHHHHHHHCGGGTCCCTTTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHTTT---
T ss_pred             hhccccccCCHHHHHHHHHHhcCCccccccCCCeEEEECCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHhccC---
Confidence            456665555555555555442 1      14668999999999999999876 457899999999999988776432   


Q ss_pred             CCCcceEEeccCcccc
Q 026513          119 GPKKMKLHLVPDRTFT  134 (237)
Q Consensus       119 ~~~~~~v~~~~~d~~~  134 (237)
                      .    ++.++.+|...
T Consensus        90 ~----~~~ii~~D~l~  101 (322)
T d1i4wa_          90 S----PLQILKRDPYD  101 (322)
T ss_dssp             S----SCEEECSCTTC
T ss_pred             C----CcEEEeCchhh
Confidence            2    26778888763

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.74  E-value=0.00034  Score=52.02  Aligned_cols=108  Identities=18%  Similarity=0.194  Sum_probs=68.9

Q ss_pred             hccCCCeEEEEcCcc-hHHHHHHHH-hCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccc
Q 026513           67 LIKGGELFLDYGTGS-GILGIAAIK-FGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGV  144 (237)
Q Consensus        67 ~~~~~~~vLDlG~G~-G~~~~~la~-~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~  144 (237)
                      .+++|.+|+-+|+|+ |.++..+++ .|..+|+++|.++.-++.|++.    |...    +.....+...        +.
T Consensus        23 ~~~~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~~----Ga~~----~~~~~~~~~~--------~~   86 (171)
T d1pl8a2          23 GVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEI----GADL----VLQISKESPQ--------EI   86 (171)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT----TCSE----EEECSSCCHH--------HH
T ss_pred             CCCCCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHHHh----CCcc----cccccccccc--------cc
Confidence            367899999999987 555666665 4777899999999998888754    4321    2211111100        00


Q ss_pred             ccccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEeccCCC
Q 026513          145 VEDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILSE  199 (237)
Q Consensus       145 ~~~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~~~~~  199 (237)
                      .+.     + .......+|+|+......   ..++....++++||++++.+...+
T Consensus        87 ~~~-----~-~~~~g~g~Dvvid~~G~~---~~~~~a~~~~~~gG~iv~~G~~~~  132 (171)
T d1pl8a2          87 ARK-----V-EGQLGCKPEVTIECTGAE---ASIQAGIYATRSGGTLVLVGLGSE  132 (171)
T ss_dssp             HHH-----H-HHHHTSCCSEEEECSCCH---HHHHHHHHHSCTTCEEEECSCCCS
T ss_pred             ccc-----c-cccCCCCceEEEeccCCc---hhHHHHHHHhcCCCEEEEEecCCC
Confidence            000     0 001145799998766432   356778889999999999776543

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=97.73  E-value=4.9e-06  Score=63.24  Aligned_cols=106  Identities=15%  Similarity=0.162  Sum_probs=67.4

Q ss_pred             ccCCCeEEEEcCcc-hHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccc
Q 026513           68 IKGGELFLDYGTGS-GILGIAAIKF-GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVV  145 (237)
Q Consensus        68 ~~~~~~vLDlG~G~-G~~~~~la~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  145 (237)
                      +++|.+||-+|+|. |.++..+++. |..+|+++|.++..++.+++.    |...   -+.....+..+         ..
T Consensus        26 ~~~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~~l----Ga~~---vi~~~~~~~~~---------~~   89 (182)
T d1vj0a2          26 SFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEI----GADL---TLNRRETSVEE---------RR   89 (182)
T ss_dssp             CCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHT----TCSE---EEETTTSCHHH---------HH
T ss_pred             CCCCCEEEEECCCccchhheecccccccccccccccccccccccccc----cceE---EEeccccchHH---------HH
Confidence            56899999999985 7777777764 767899999999999888754    3221   01111122110         00


Q ss_pred             cccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEeccC
Q 026513          146 EDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGIL  197 (237)
Q Consensus       146 ~~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~~~  197 (237)
                      +     .+........+|+|+.....   ...++...+.|++||++++.++.
T Consensus        90 ~-----~i~~~~~~~g~Dvvid~vG~---~~~~~~a~~~l~~~G~iv~~G~~  133 (182)
T d1vj0a2          90 K-----AIMDITHGRGADFILEATGD---SRALLEGSELLRRGGFYSVAGVA  133 (182)
T ss_dssp             H-----HHHHHTTTSCEEEEEECSSC---TTHHHHHHHHEEEEEEEEECCCC
T ss_pred             H-----HHHHhhCCCCceEEeecCCc---hhHHHHHHHHhcCCCEEEEEeec
Confidence            0     01122234569999865432   22346678899999999887654

>d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhiQ-like
domain: Hypothetical protein YhiQ
species: Shigella flexneri [TaxId: 623]

Probab=97.69  E-value=3.3e-05  Score=61.59  Aligned_cols=81  Identities=17%  Similarity=0.168  Sum_probs=59.6

Q ss_pred             CeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCC-----cceEEeccCcccccccccccccccc
Q 026513           72 ELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPK-----KMKLHLVPDRTFTASMNERVDGVVE  146 (237)
Q Consensus        72 ~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~-----~~~v~~~~~d~~~~~~~~~~~~~~~  146 (237)
                      .+|||..||.|..+..++..| .+|+++|-++......+.++........     .-+++++++|..+..          
T Consensus        90 ~~VlD~TaGlG~Da~vlA~~G-~~V~~iEr~p~l~~ll~d~l~r~~~~~~~~~~~~~ri~li~~Ds~~~L----------  158 (250)
T d2oyra1          90 PDVVDATAGLGRDAFVLASVG-CRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTAL----------  158 (250)
T ss_dssp             CCEEETTCTTCHHHHHHHHHT-CCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHS----------
T ss_pred             CEEEECCCcccHHHHHHHhCC-CEEEEEccCHHHHHHHHHHHHHHHhCchhHHHHhhhheeecCcHHHHH----------
Confidence            489999999999999999986 5699999999988877766543321111     114788899876321          


Q ss_pred             ccccccccCCCCCCceeEEEEeCChH
Q 026513          147 DLSSHKIRGISQTEKYDVVIANILLN  172 (237)
Q Consensus       147 ~~~~~~~~~~~~~~~fD~I~~n~~~~  172 (237)
                             ...  ..+||+|+.+|++.
T Consensus       159 -------~~~--~~~~DvIYlDPMFp  175 (250)
T d2oyra1         159 -------TDI--TPRPQVVYLDPMFP  175 (250)
T ss_dssp             -------TTC--SSCCSEEEECCCCC
T ss_pred             -------hcc--CCCCCEEEECCCCc
Confidence                   111  45799999999974

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=97.67  E-value=7.8e-05  Score=57.20  Aligned_cols=107  Identities=16%  Similarity=0.313  Sum_probs=70.5

Q ss_pred             hccCCCeEEEEcCcc-hHHHHHHHH-hCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEe-ccCccccccccccccc
Q 026513           67 LIKGGELFLDYGTGS-GILGIAAIK-FGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHL-VPDRTFTASMNERVDG  143 (237)
Q Consensus        67 ~~~~~~~vLDlG~G~-G~~~~~la~-~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~-~~~d~~~~~~~~~~~~  143 (237)
                      .+++|.+||.+|||. |.++..+++ .+..+|+++|.++..++.|++.    |...    +.. ...|+.+         
T Consensus        22 ~v~~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~~----Ga~~----~~~~~~~~~~~---------   84 (195)
T d1kola2          22 GVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQ----GFEI----ADLSLDTPLHE---------   84 (195)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT----TCEE----EETTSSSCHHH---------
T ss_pred             CCCCCCEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhhhhc----cccE----EEeCCCcCHHH---------
Confidence            478999999999998 666677775 5888999999999998888755    3221    111 1111110         


Q ss_pred             cccccccccccCCCCCCceeEEEEeCChH------------HHHHHHHHHhHhcCCCeEEEEeccCC
Q 026513          144 VVEDLSSHKIRGISQTEKYDVVIANILLN------------PLLQLADHIVSYAKPGAVVGISGILS  198 (237)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~fD~I~~n~~~~------------~~~~~l~~~~~~L~~gG~liis~~~~  198 (237)
                              ..........+|+++-.....            .....++.+.+.++|||.+.+.++..
T Consensus        85 --------~i~~~t~g~g~D~vid~vG~~~~~~~~~~~~~~~~~~~l~~~~~~~r~gG~v~~~G~~~  143 (195)
T d1kola2          85 --------QIAALLGEPEVDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIPGLYV  143 (195)
T ss_dssp             --------HHHHHHSSSCEEEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEECSCCC
T ss_pred             --------HHHHHhCCCCcEEEEECccccccCCcccceeecCcHHHHHHHHHHHhcCCEEEEeeecC
Confidence                    011122345799998543211            12356788999999999999987643

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=97.57  E-value=0.00024  Score=52.96  Aligned_cols=103  Identities=14%  Similarity=0.125  Sum_probs=67.8

Q ss_pred             ccCCCeEEEEcCcc-hHHHHHHHH-hCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccc
Q 026513           68 IKGGELFLDYGTGS-GILGIAAIK-FGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVV  145 (237)
Q Consensus        68 ~~~~~~vLDlG~G~-G~~~~~la~-~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  145 (237)
                      +++|.+||-+|+|. |..+..+++ .|...|+++|.++.-++.+++.    +..    .+.-...|..        .+. 
T Consensus        30 ~~~g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~~----ga~----~~i~~~~~~~--------~~~-   92 (172)
T d1h2ba2          30 LYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAERL----GAD----HVVDARRDPV--------KQV-   92 (172)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHHT----TCS----EEEETTSCHH--------HHH-
T ss_pred             cCCCCEEEEeCCChHHHHHHHHHHhhcCcccccccchhHHHHHHhhc----ccc----eeecCcccHH--------HHH-
Confidence            57899999999987 555566664 5888999999999888877754    322    1211111111        000 


Q ss_pred             cccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEeccCC
Q 026513          146 EDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILS  198 (237)
Q Consensus       146 ~~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~~~~  198 (237)
                              ........+|+|+......   ..++.....++++|++++.++..
T Consensus        93 --------~~~~~~~g~d~vid~~g~~---~~~~~a~~~l~~~G~iv~~G~~~  134 (172)
T d1h2ba2          93 --------MELTRGRGVNVAMDFVGSQ---ATVDYTPYLLGRMGRLIIVGYGG  134 (172)
T ss_dssp             --------HHHTTTCCEEEEEESSCCH---HHHHHGGGGEEEEEEEEECCCSS
T ss_pred             --------HHhhCCCCceEEEEecCcc---hHHHHHHHHHhCCCEEEEEeCcc
Confidence                    1112245799999776433   34577888999999999977643

>d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: Methyltransferase mboII
species: Moraxella bovis [TaxId: 476]

Probab=97.51  E-value=0.00013  Score=57.56  Aligned_cols=56  Identities=27%  Similarity=0.349  Sum_probs=46.5

Q ss_pred             HHHHHHHHhhccCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHH
Q 026513           58 KLCLLLLRRLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAA  114 (237)
Q Consensus        58 ~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~  114 (237)
                      .++...++..-.+|..|||..||+|+.+.++.+.+ ++.+|+|+++..++.|++++.
T Consensus       200 ~L~~~lI~~~s~~gd~VlDpF~GSGTT~~aa~~~~-R~~ig~El~~~y~~~a~~Rl~  255 (256)
T d1g60a_         200 DLIERIIRASSNPNDLVLDCFMGSGTTAIVAKKLG-RNFIGCDMNAEYVNQANFVLN  255 (256)
T ss_dssp             HHHHHHHHHHCCTTCEEEESSCTTCHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHhCCCCCEEEECCCCchHHHHHHHHcC-CeEEEEeCCHHHHHHHHHHHc
Confidence            34444445555789999999999999999888884 669999999999999999875

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=97.43  E-value=0.00028  Score=52.73  Aligned_cols=101  Identities=16%  Similarity=0.238  Sum_probs=66.2

Q ss_pred             ccCCCeEEEEcCcc-hHHHHHHHH-hCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccc
Q 026513           68 IKGGELFLDYGTGS-GILGIAAIK-FGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVV  145 (237)
Q Consensus        68 ~~~~~~vLDlG~G~-G~~~~~la~-~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  145 (237)
                      +++|.+||-+|||. |..+..+++ .|...++++|.++.-++.+++.    |...   -+.....|+.            
T Consensus        26 ~~~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~~----Ga~~---~i~~~~~~~~------------   86 (174)
T d1f8fa2          26 VTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQL----GATH---VINSKTQDPV------------   86 (174)
T ss_dssp             CCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHH----TCSE---EEETTTSCHH------------
T ss_pred             CCCCCEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHHHHHHc----CCeE---EEeCCCcCHH------------
Confidence            67899999999986 455666664 5888899999999988888754    4321   0111111211            


Q ss_pred             cccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEecc
Q 026513          146 EDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGI  196 (237)
Q Consensus       146 ~~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~~  196 (237)
                      +     .+.... ++.+|+|+-.....   ..++.+.++++|+|.+++.+.
T Consensus        87 ~-----~i~~~t-~gg~D~vid~~G~~---~~~~~~~~~~~~~G~i~~~G~  128 (174)
T d1f8fa2          87 A-----AIKEIT-DGGVNFALESTGSP---EILKQGVDALGILGKIAVVGA  128 (174)
T ss_dssp             H-----HHHHHT-TSCEEEEEECSCCH---HHHHHHHHTEEEEEEEEECCC
T ss_pred             H-----HHHHHc-CCCCcEEEEcCCcH---HHHHHHHhcccCceEEEEEee
Confidence            0     011122 35799999766432   345667889999999998765

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=97.43  E-value=0.00024  Score=53.29  Aligned_cols=107  Identities=17%  Similarity=0.138  Sum_probs=69.8

Q ss_pred             hccCCCeEEEEcCcc-hHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccc
Q 026513           67 LIKGGELFLDYGTGS-GILGIAAIKF-GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGV  144 (237)
Q Consensus        67 ~~~~~~~vLDlG~G~-G~~~~~la~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~  144 (237)
                      .+++|.+|+-+|||. |.+++.+++. |..+|+++|.++.-++.|++.    |...   -+.....|..       ... 
T Consensus        25 ~v~~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~~~----Ga~~---~i~~~~~~~~-------~~~-   89 (174)
T d1e3ia2          25 KVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKAL----GATD---CLNPRELDKP-------VQD-   89 (174)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHT----TCSE---EECGGGCSSC-------HHH-
T ss_pred             CCCCCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHHHHh----CCCc---ccCCccchhh-------hhh-
Confidence            368899999999998 8888888764 888899999999988877754    4321   0111111110       000 


Q ss_pred             ccccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCC-eEEEEeccCCC
Q 026513          145 VEDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPG-AVVGISGILSE  199 (237)
Q Consensus       145 ~~~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~g-G~liis~~~~~  199 (237)
                              .......+.+|+++-....   ...+....+.+++| |.+++-+....
T Consensus        90 --------~~~~~~~~G~d~vie~~G~---~~~~~~a~~~~~~g~G~~v~vG~~~~  134 (174)
T d1e3ia2          90 --------VITELTAGGVDYSLDCAGT---AQTLKAAVDCTVLGWGSCTVVGAKVD  134 (174)
T ss_dssp             --------HHHHHHTSCBSEEEESSCC---HHHHHHHHHTBCTTTCEEEECCCSSS
T ss_pred             --------hHhhhhcCCCcEEEEeccc---chHHHHHHHHhhcCCeEEEecCCCCC
Confidence                    0011124579999876533   33567788899996 99999776544

>d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.PvuII N4 cytosine-specific DNA methyltransferase
species: Proteus vulgaris [TaxId: 585]

Probab=97.41  E-value=0.00011  Score=59.74  Aligned_cols=59  Identities=22%  Similarity=0.266  Sum_probs=48.1

Q ss_pred             HHHHHHHHhhccCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcC
Q 026513           58 KLCLLLLRRLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNN  117 (237)
Q Consensus        58 ~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~  117 (237)
                      .++.+.++..-.+|..|||..||+|+.+.++...| ++.+|+|++++.++.|++++....
T Consensus       238 ~L~~rlI~~~s~~gdiVlDpF~GSGTT~~AA~~lg-R~~Ig~El~~~y~~~a~~Rl~~~~  296 (320)
T d1booa_         238 KLPEFFIRMLTEPDDLVVDIFGGSNTTGLVAERES-RKWISFEMKPEYVAASAFRFLDNN  296 (320)
T ss_dssp             HHHHHHHHHHCCTTCEEEETTCTTCHHHHHHHHTT-CEEEEEESCHHHHHHHHGGGSCSC
T ss_pred             HHHHHhhhhcccCCCEEEecCCCCcHHHHHHHHcC-CcEEEEeCCHHHHHHHHHHHHhcc
Confidence            44455555556789999999999999999988884 669999999999999998865443

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.35  E-value=0.00042  Score=51.63  Aligned_cols=102  Identities=19%  Similarity=0.150  Sum_probs=65.7

Q ss_pred             ccCCCeEEEEcC--cchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccc
Q 026513           68 IKGGELFLDYGT--GSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVV  145 (237)
Q Consensus        68 ~~~~~~vLDlG~--G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  145 (237)
                      +++|.+||-.|+  |.|..++.+++.-..++++++.+++..+.+++    .|...   -+.....|+.+           
T Consensus        26 ~~~g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~~~~~~~~~~----~Ga~~---vi~~~~~~~~~-----------   87 (174)
T d1yb5a2          26 VKAGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIVLQ----NGAHE---VFNHREVNYID-----------   87 (174)
T ss_dssp             CCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH----TTCSE---EEETTSTTHHH-----------
T ss_pred             CCCCCEEEEEeccccccccccccccccCcccccccccccccccccc----cCccc---ccccccccHHH-----------
Confidence            678999999996  34777888887644579999989877776654    35432   11111122110           


Q ss_pred             cccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEeccC
Q 026513          146 EDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGIL  197 (237)
Q Consensus       146 ~~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~~~  197 (237)
                            .+........+|+|+....    ...++...+.|+|+|+++..+..
T Consensus        88 ------~i~~~t~~~g~d~v~d~~g----~~~~~~~~~~l~~~G~iv~~G~~  129 (174)
T d1yb5a2          88 ------KIKKYVGEKGIDIIIEMLA----NVNLSKDLSLLSHGGRVIVVGSR  129 (174)
T ss_dssp             ------HHHHHHCTTCEEEEEESCH----HHHHHHHHHHEEEEEEEEECCCC
T ss_pred             ------HhhhhhccCCceEEeeccc----HHHHHHHHhccCCCCEEEEEecC
Confidence                  0111223567999997653    23567788899999999986543

>d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.RsrI N6 adenosine-specific DNA methyltransferase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=97.33  E-value=0.00026  Score=56.41  Aligned_cols=58  Identities=26%  Similarity=0.303  Sum_probs=48.1

Q ss_pred             HHHHHHHHhhccCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHc
Q 026513           58 KLCLLLLRRLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALN  116 (237)
Q Consensus        58 ~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~  116 (237)
                      .++...++..-.+|..|||..||+|+.++++.+.| ++.+|+|+++...+.|++++...
T Consensus       195 ~L~~~~I~~~s~~gdiVLDpF~GSGTT~~Aa~~lg-R~~ig~El~~~y~~~a~~Ri~~~  252 (279)
T d1eg2a_         195 AVIERLVRALSHPGSTVLDFFAGSGVTARVAIQEG-RNSICTDAAPVFKEYYQKQLTFL  252 (279)
T ss_dssp             HHHHHHHHHHSCTTCEEEETTCTTCHHHHHHHHHT-CEEEEEESSTHHHHHHHHHHHHC
T ss_pred             hHHHHHHHhhcCCCCEEEecCCCCcHHHHHHHHhC-CeEEEEeCCHHHHHHHHHHHHHh
Confidence            34445555556789999999999999999988884 67999999999999999998753

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=97.26  E-value=0.0003  Score=52.18  Aligned_cols=106  Identities=16%  Similarity=0.213  Sum_probs=67.5

Q ss_pred             hccCCCeEEEEcC-c-chHHHHHHHH-hCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccc
Q 026513           67 LIKGGELFLDYGT-G-SGILGIAAIK-FGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDG  143 (237)
Q Consensus        67 ~~~~~~~vLDlG~-G-~G~~~~~la~-~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~  143 (237)
                      .++++.+|+-+|+ | .|.+++.+++ .|..+|+++|.++.-++.+++.    |...   .+.....|..+         
T Consensus        24 ~~~~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~~----Ga~~---~i~~~~~~~~~---------   87 (170)
T d1jvba2          24 SLDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRA----GADY---VINASMQDPLA---------   87 (170)
T ss_dssp             TCCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHH----TCSE---EEETTTSCHHH---------
T ss_pred             CCCCCCEEEEEeccccceeeeeecccccccccccccccchhhHHHHHHc----CCce---eeccCCcCHHH---------
Confidence            4678999999997 4 3566666554 5778999999999988888754    4321   11111111110         


Q ss_pred             cccccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEeccCCC
Q 026513          144 VVEDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILSE  199 (237)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~~~~~  199 (237)
                              ..........||+++....-   ...++...+.++|+|.+++.++...
T Consensus        88 --------~~~~~~~~~~~d~vid~~g~---~~~~~~a~~~l~~~G~iv~~G~~~~  132 (170)
T d1jvba2          88 --------EIRRITESKGVDAVIDLNNS---EKTLSVYPKALAKQGKYVMVGLFGA  132 (170)
T ss_dssp             --------HHHHHTTTSCEEEEEESCCC---HHHHTTGGGGEEEEEEEEECCSSCC
T ss_pred             --------HHHHHhhcccchhhhccccc---chHHHhhhhhcccCCEEEEeccccC
Confidence                    01112234579999876532   2344667889999999998766543

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.18  E-value=8.9e-05  Score=55.27  Aligned_cols=103  Identities=13%  Similarity=-0.016  Sum_probs=63.9

Q ss_pred             hccCCCeEEEEcCcc-hHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccc
Q 026513           67 LIKGGELFLDYGTGS-GILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVV  145 (237)
Q Consensus        67 ~~~~~~~vLDlG~G~-G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  145 (237)
                      .+++|.+|+-+|+|. |.+++.+++....+|+++|.++..++.|++.    |...    +.-...+.          ++.
T Consensus        24 ~~~~g~~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~~k~~~a~~l----Ga~~----~i~~~~~~----------~~~   85 (168)
T d1piwa2          24 GCGPGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKREDAMKM----GADH----YIATLEEG----------DWG   85 (168)
T ss_dssp             TCSTTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHH----TCSE----EEEGGGTS----------CHH
T ss_pred             CcCCCCEEEEECCCCcchhHHHHhhhccccccccccchhHHHHhhcc----CCcE----EeeccchH----------HHH
Confidence            468899999999984 7777777765334799999999988887754    4321    21111110          000


Q ss_pred             cccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEeccCC
Q 026513          146 EDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILS  198 (237)
Q Consensus       146 ~~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~~~~  198 (237)
                      +        .  ..+.+|+++....... ...+....+.++|+|.+++-+...
T Consensus        86 ~--------~--~~~~~d~vi~~~~~~~-~~~~~~~~~~l~~~G~iv~~G~~~  127 (168)
T d1piwa2          86 E--------K--YFDTFDLIVVCASSLT-DIDFNIMPKAMKVGGRIVSISIPE  127 (168)
T ss_dssp             H--------H--SCSCEEEEEECCSCST-TCCTTTGGGGEEEEEEEEECCCCC
T ss_pred             H--------h--hhcccceEEEEecCCc-cchHHHHHHHhhccceEEEecccc
Confidence            0        1  1357998886322111 111355788999999999876543

>d1dcta_ c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus aegyptius [TaxId: 197575]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNA methylase HaeIII
species: Haemophilus aegyptius [TaxId: 197575]

Probab=97.11  E-value=0.0015  Score=52.77  Aligned_cols=70  Identities=19%  Similarity=0.177  Sum_probs=52.6

Q ss_pred             CeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccccccc
Q 026513           72 ELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDLSSH  151 (237)
Q Consensus        72 ~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~  151 (237)
                      .+|+|+.||.|.+...+.+.|...+.++|+++.+++..+.|..          -.++.+|+.+....             
T Consensus         1 mk~~~lF~G~Gg~~~gl~~aG~~~~~a~e~d~~a~~~~~~N~~----------~~~~~~Di~~~~~~-------------   57 (324)
T d1dcta_           1 MNLISLFSGAGGLDLGFQKAGFRIICANEYDKSIWKTYESNHS----------AKLIKGDISKISSD-------------   57 (324)
T ss_dssp             CEEEEESCSSCHHHHHHHHHTCEEEEEEECCHHHHHHHHHHCC----------SEEEESCTTTSCGG-------------
T ss_pred             CeEEEeCcCcCHHHHHHHHCCCEEEEEEeCCHHHHHHHHHHCC----------CCCccCChhhCCHh-------------
Confidence            3699999999999988888888888899999999888877641          12446777632211             


Q ss_pred             cccCCCCCCceeEEEEeCC
Q 026513          152 KIRGISQTEKYDVVIANIL  170 (237)
Q Consensus       152 ~~~~~~~~~~fD~I~~n~~  170 (237)
                            .-.+.|+++..+|
T Consensus        58 ------~~~~~dll~~g~P   70 (324)
T d1dcta_          58 ------EFPKCDGIIGGPP   70 (324)
T ss_dssp             ------GSCCCSEEEECCC
T ss_pred             ------HcccccEEeeccc
Confidence                  1246899999888

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.06  E-value=0.0008  Score=49.55  Aligned_cols=102  Identities=13%  Similarity=0.171  Sum_probs=62.9

Q ss_pred             hccCCCeEEEEcCcc-hHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccc
Q 026513           67 LIKGGELFLDYGTGS-GILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVV  145 (237)
Q Consensus        67 ~~~~~~~vLDlG~G~-G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  145 (237)
                      .+++|.+|+-+|+|. |.++..+++....+|+++|.++..++.+++.    |...   -+.....|..+           
T Consensus        24 ~~~~g~~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~~~~~~~a~~~----Ga~~---~i~~~~~~~~~-----------   85 (166)
T d1llua2          24 NARPGQWVAISGIGGLGHVAVQYARAMGLHVAAIDIDDAKLELARKL----GASL---TVNARQEDPVE-----------   85 (166)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHT----TCSE---EEETTTSCHHH-----------
T ss_pred             CCCCCCEEEEeeccccHHHHHHHHHHcCCccceecchhhHHHhhhcc----Cccc---cccccchhHHH-----------
Confidence            368899999999986 6677777765347899999999998877653    4321   01111111110           


Q ss_pred             cccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEeccC
Q 026513          146 EDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGIL  197 (237)
Q Consensus       146 ~~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~~~  197 (237)
                       .     +... ..+.+|.|++...-    ..+....+.|+++|.+++-++.
T Consensus        86 -~-----~~~~-~~g~~~~i~~~~~~----~~~~~~~~~l~~~G~iv~~G~~  126 (166)
T d1llua2          86 -A-----IQRD-IGGAHGVLVTAVSN----SAFGQAIGMARRGGTIALVGLP  126 (166)
T ss_dssp             -H-----HHHH-HSSEEEEEECCSCH----HHHHHHHTTEEEEEEEEECCCC
T ss_pred             -H-----HHHh-hcCCcccccccccc----hHHHHHHHHhcCCcEEEEEEec
Confidence             0     0000 12344555544432    3456678899999999987654

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=97.05  E-value=0.0013  Score=49.02  Aligned_cols=105  Identities=14%  Similarity=0.079  Sum_probs=63.6

Q ss_pred             hccCCCeEEEEcCcc-hHHHHHHHH-hCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccc
Q 026513           67 LIKGGELFLDYGTGS-GILGIAAIK-FGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGV  144 (237)
Q Consensus        67 ~~~~~~~vLDlG~G~-G~~~~~la~-~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~  144 (237)
                      .+++|.+|+-+|||. |..++.+++ .|..+|+++|.++.-++.|++.    |...   -+.....|..       +.+.
T Consensus        24 ~~~~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~~l----Ga~~---~i~~~~~d~~-------~~~~   89 (174)
T d1p0fa2          24 KVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIEL----GATE---CLNPKDYDKP-------IYEV   89 (174)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHT----TCSE---EECGGGCSSC-------HHHH
T ss_pred             CCCCCCEEEEECCCchhHHHHHHHHHcCCceeeccCChHHHHHHHHHc----CCcE---EEcCCCchhH-------HHHH
Confidence            368899999999997 455555665 5888999999999999888754    4331   1111122210       0000


Q ss_pred             ccccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhc-CCCeEEEEeccC
Q 026513          145 VEDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYA-KPGAVVGISGIL  197 (237)
Q Consensus       145 ~~~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L-~~gG~liis~~~  197 (237)
                               .....++.+|+++-.....   ..+......+ +++|.+++.++.
T Consensus        90 ---------~~~~~~~G~d~vid~~g~~---~~~~~~~~~~~~~~G~~v~vG~~  131 (174)
T d1p0fa2          90 ---------ICEKTNGGVDYAVECAGRI---ETMMNALQSTYCGSGVTVVLGLA  131 (174)
T ss_dssp             ---------HHHHTTSCBSEEEECSCCH---HHHHHHHHTBCTTTCEEEECCCC
T ss_pred             ---------HHHhcCCCCcEEEEcCCCc---hHHHHHHHHHHHhcCceEEEEEe
Confidence                     0111245799998766433   2334444455 556998887654

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=97.00  E-value=0.0015  Score=48.83  Aligned_cols=105  Identities=15%  Similarity=0.153  Sum_probs=63.1

Q ss_pred             ccCCCeEEEEcCcc-hHHHHHHHH-hCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccc
Q 026513           68 IKGGELFLDYGTGS-GILGIAAIK-FGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVV  145 (237)
Q Consensus        68 ~~~~~~vLDlG~G~-G~~~~~la~-~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  145 (237)
                      +++|..|+-+|||. |.+++.+++ .|..+|+++|.+++-++.|++.    |...   -+.....|...           
T Consensus        27 ~~~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~~----GA~~---~in~~~~~~~~-----------   88 (176)
T d1d1ta2          27 VKPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAV----GATE---CISPKDSTKPI-----------   88 (176)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHH----TCSE---EECGGGCSSCH-----------
T ss_pred             CCCCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHHHHHHhc----CCcE---EECccccchHH-----------
Confidence            68899999999997 455666665 5778999999999999998876    3221   12211222110           


Q ss_pred             cccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEeccC
Q 026513          146 EDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGIL  197 (237)
Q Consensus       146 ~~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~~~  197 (237)
                      +     ..........+|+++-......  .+...+..+++.+|.+++.+..
T Consensus        89 ~-----~~~~~~~g~G~d~vi~~~g~~~--~~~~a~~~~~~~~G~~v~vG~~  133 (176)
T d1d1ta2          89 S-----EVLSEMTGNNVGYTFEVIGHLE--TMIDALASCHMNYGTSVVVGVP  133 (176)
T ss_dssp             H-----HHHHHHHTSCCCEEEECSCCHH--HHHHHHTTSCTTTCEEEECSCC
T ss_pred             H-----HHHHHhccccceEEEEeCCchH--HHHHHHHHhhcCCeEEEEEEcc
Confidence            0     0001112457998886553322  1223344455666899887654

>d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus haemolyticus [TaxId: 726]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNA methylase HhaI
species: Haemophilus haemolyticus [TaxId: 726]

Probab=96.85  E-value=0.0015  Score=53.17  Aligned_cols=44  Identities=25%  Similarity=0.209  Sum_probs=40.0

Q ss_pred             CCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHH
Q 026513           70 GGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNA  113 (237)
Q Consensus        70 ~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~  113 (237)
                      .+.+|||+.||.|.+...+.+.|...+.++|+++.+++..+.|.
T Consensus        10 ~~lrv~~lFsG~Gg~~~gl~~aG~~~v~a~e~d~~a~~~~~~N~   53 (327)
T d2c7pa1          10 TGLRFIDLFAGLGGFRLALESCGAECVYSNEWDKYAQEVYEMNF   53 (327)
T ss_dssp             TTCEEEEETCTTTHHHHHHHHTTCEEEEEECCCHHHHHHHHHHH
T ss_pred             CCCeEEEECccccHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHC
Confidence            47899999999999999998888888889999999999988875

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=96.82  E-value=0.019  Score=41.78  Aligned_cols=91  Identities=20%  Similarity=0.159  Sum_probs=63.0

Q ss_pred             eEEEEcCcc--hHHHHHHHHhCC-CeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccccc
Q 026513           73 LFLDYGTGS--GILGIAAIKFGA-AMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDLS  149 (237)
Q Consensus        73 ~vLDlG~G~--G~~~~~la~~~~-~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~  149 (237)
                      +|+=+|||.  |.++..+.+.+. .+|+++|.++..++.+++.    +...   ...  ... .                
T Consensus         3 ~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~----~~~~---~~~--~~~-~----------------   56 (171)
T d2g5ca2           3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDL----GIID---EGT--TSI-A----------------   56 (171)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHT----TSCS---EEE--SCG-G----------------
T ss_pred             EEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHh----hcch---hhh--hhh-h----------------
Confidence            578899986  356666766654 5799999999998888754    3221   111  110 0                


Q ss_pred             cccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEec
Q 026513          150 SHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISG  195 (237)
Q Consensus       150 ~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~  195 (237)
                            .......|+|+...|.....+++..+...++++..++-.+
T Consensus        57 ------~~~~~~~dlIila~p~~~~~~vl~~l~~~~~~~~ii~d~~   96 (171)
T d2g5ca2          57 ------KVEDFSPDFVMLSSPVRTFREIAKKLSYILSEDATVTDQG   96 (171)
T ss_dssp             ------GGGGTCCSEEEECSCHHHHHHHHHHHHHHSCTTCEEEECC
T ss_pred             ------hhhccccccccccCCchhhhhhhhhhhccccccccccccc
Confidence                  0013468999999998888899999999999887666543

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.82  E-value=0.00057  Score=50.29  Aligned_cols=101  Identities=15%  Similarity=0.123  Sum_probs=62.3

Q ss_pred             hccCCCeEEEEcCcc-hHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEE-eccCcccccccccccccc
Q 026513           67 LIKGGELFLDYGTGS-GILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLH-LVPDRTFTASMNERVDGV  144 (237)
Q Consensus        67 ~~~~~~~vLDlG~G~-G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~-~~~~d~~~~~~~~~~~~~  144 (237)
                      .+++|.+||-.|+|+ |...+.+++....+|+++|.++.-++.+++.    |...    +. ....|...          
T Consensus        24 ~~~~g~~vlv~G~G~iG~~a~~~a~~~g~~v~~~~~~~~r~~~~k~~----Ga~~----~~~~~~~~~~~----------   85 (168)
T d1rjwa2          24 GAKPGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAKEL----GADL----VVNPLKEDAAK----------   85 (168)
T ss_dssp             TCCTTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHT----TCSE----EECTTTSCHHH----------
T ss_pred             CCCCCCEEEEeecccchhhhhHHHhcCCCeEeccCCCHHHhhhhhhc----Ccce----ecccccchhhh----------
Confidence            468899999999987 5666667766455799999999988877653    4331    21 11111110          


Q ss_pred             ccccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEeccC
Q 026513          145 VEDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGIL  197 (237)
Q Consensus       145 ~~~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~~~  197 (237)
                             .+.... .+.+|+| .+...   ...+....+.++|+|.+++.+..
T Consensus        86 -------~~~~~~-~~~~~~v-~~~~~---~~~~~~a~~~l~~~G~i~~~g~~  126 (168)
T d1rjwa2          86 -------FMKEKV-GGVHAAV-VTAVS---KPAFQSAYNSIRRGGACVLVGLP  126 (168)
T ss_dssp             -------HHHHHH-SSEEEEE-ESSCC---HHHHHHHHHHEEEEEEEEECCCC
T ss_pred             -------hccccc-CCCceEE-eecCC---HHHHHHHHHHhccCCceEecccc
Confidence                   000111 2334444 44432   24467788899999999997654

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=96.75  E-value=0.001  Score=49.20  Aligned_cols=100  Identities=13%  Similarity=0.122  Sum_probs=63.4

Q ss_pred             hccCCCeEEEEcCcc-hHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccc
Q 026513           67 LIKGGELFLDYGTGS-GILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVV  145 (237)
Q Consensus        67 ~~~~~~~vLDlG~G~-G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  145 (237)
                      .+++|.+||-+|+|. |.+++.+++.-..+++++|.++.-++.+++.    |...    +.- ..+-.            
T Consensus        27 ~~~~G~~VlI~GaG~vG~~a~qlak~~Ga~~i~~~~~~~~~~~a~~l----Gad~----~i~-~~~~~------------   85 (168)
T d1uufa2          27 QAGPGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAAKAL----GADE----VVN-SRNAD------------   85 (168)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHH----TCSE----EEE-TTCHH------------
T ss_pred             CCCCCCEEEEeccchHHHHHHHHhhcccccchhhccchhHHHHHhcc----CCcE----EEE-Cchhh------------
Confidence            478899999999986 7777777775344577899999887776643    4321    211 11100            


Q ss_pred             cccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEeccCC
Q 026513          146 EDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILS  198 (237)
Q Consensus       146 ~~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~~~~  198 (237)
                              ......+.+|+++......   ..+.....+++++|.+++.+...
T Consensus        86 --------~~~~~~~~~D~vid~~g~~---~~~~~~~~~l~~~G~iv~~G~~~  127 (168)
T d1uufa2          86 --------EMAAHLKSFDFILNTVAAP---HNLDDFTTLLKRDGTMTLVGAPA  127 (168)
T ss_dssp             --------HHHTTTTCEEEEEECCSSC---CCHHHHHTTEEEEEEEEECCCC-
T ss_pred             --------HHHHhcCCCceeeeeeecc---hhHHHHHHHHhcCCEEEEeccCC
Confidence                    0111135799998754321   12355678999999999977643

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.71  E-value=0.0067  Score=47.82  Aligned_cols=87  Identities=20%  Similarity=0.149  Sum_probs=59.6

Q ss_pred             CCCeEEEEcCcchH---HHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccc
Q 026513           70 GGELFLDYGTGSGI---LGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVE  146 (237)
Q Consensus        70 ~~~~vLDlG~G~G~---~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  146 (237)
                      +|+.+|-.|+++|.   ++..+++.|. +|+.+|.++..++.+.+.+...+...   ++.++.+|+.+.   +.+.++++
T Consensus         9 k~Kv~lITGas~GIG~aiA~~la~~G~-~Vv~~~r~~~~l~~~~~~l~~~~~~~---~~~~~~~Dls~~---~~v~~~v~   81 (257)
T d1xg5a_           9 RDRLALVTGASGGIGAAVARALVQQGL-KVVGCARTVGNIEELAAECKSAGYPG---TLIPYRCDLSNE---EDILSMFS   81 (257)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCSS---EEEEEECCTTCH---HHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCc---eEEEEEccCCCH---HHHHHHHH
Confidence            47899999999883   4445666765 59999999999998888777766443   577888998752   22333332


Q ss_pred             ccccccccCCCCCCceeEEEEeCC
Q 026513          147 DLSSHKIRGISQTEKYDVVIANIL  170 (237)
Q Consensus       147 ~~~~~~~~~~~~~~~fD~I~~n~~  170 (237)
                      ...+       .-++.|++|.|..
T Consensus        82 ~~~~-------~~g~iD~lVnnAg   98 (257)
T d1xg5a_          82 AIRS-------QHSGVDICINNAG   98 (257)
T ss_dssp             HHHH-------HHCCCSEEEECCC
T ss_pred             HHHH-------hcCCCCEEEeccc
Confidence            2110       1257899998764

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=96.56  E-value=0.0046  Score=45.69  Aligned_cols=101  Identities=17%  Similarity=0.131  Sum_probs=65.6

Q ss_pred             ccCCCeEEEEcCcc--hHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccc
Q 026513           68 IKGGELFLDYGTGS--GILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVV  145 (237)
Q Consensus        68 ~~~~~~vLDlG~G~--G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  145 (237)
                      +++|++||-.|+|+  |..++.+++....+|++++.++.-.+.+++.    |...   -+.....|+.+           
T Consensus        26 l~~g~~Vlv~ga~g~vG~~~iqlak~~Ga~Vi~~~~s~~k~~~~~~l----Ga~~---vi~~~~~d~~~-----------   87 (179)
T d1qora2          26 IKPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSALKA----GAWQ---VINYREEDLVE-----------   87 (179)
T ss_dssp             CCTTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHH----TCSE---EEETTTSCHHH-----------
T ss_pred             CCCCCEEEEEccccccchHHHHHHHHhCCeEeecccchHHHHHHHhc----CCeE---EEECCCCCHHH-----------
Confidence            57899999986665  5777788876456799999999998887753    4331   12222222221           


Q ss_pred             cccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEecc
Q 026513          146 EDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGI  196 (237)
Q Consensus       146 ~~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~~  196 (237)
                            .+.....+..+|+|+....-.    .+......++++|.+++.+.
T Consensus        88 ------~v~~~t~g~g~d~v~d~~g~~----~~~~~~~~l~~~G~~v~~g~  128 (179)
T d1qora2          88 ------RLKEITGGKKVRVVYDSVGRD----TWERSLDCLQRRGLMVSFGN  128 (179)
T ss_dssp             ------HHHHHTTTCCEEEEEECSCGG----GHHHHHHTEEEEEEEEECCC
T ss_pred             ------HHHHHhCCCCeEEEEeCccHH----HHHHHHHHHhcCCeeeeccc
Confidence                  111223356899988766443    34667789999999887543

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=96.47  E-value=0.037  Score=40.00  Aligned_cols=87  Identities=11%  Similarity=0.080  Sum_probs=59.4

Q ss_pred             eEEEEcCcc--hHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccccccc
Q 026513           73 LFLDYGTGS--GILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDLSS  150 (237)
Q Consensus        73 ~vLDlG~G~--G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~  150 (237)
                      +|.=||+|.  +.++..+.+.| .+|++.|.++..++.+++.    ++.+    ..  ..+.                  
T Consensus         2 kI~iIG~G~mG~~lA~~l~~~g-~~V~~~d~~~~~~~~a~~~----~~~~----~~--~~~~------------------   52 (165)
T d2f1ka2           2 KIGVVGLGLIGASLAGDLRRRG-HYLIGVSRQQSTCEKAVER----QLVD----EA--GQDL------------------   52 (165)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTT-CEEEEECSCHHHHHHHHHT----TSCS----EE--ESCG------------------
T ss_pred             EEEEEeecHHHHHHHHHHHHCC-CEEEEEECCchHHHHHHHh----hccc----ee--eeec------------------
Confidence            577788884  35566666665 4699999999887776542    3221    11  0110                  


Q ss_pred             ccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEe
Q 026513          151 HKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGIS  194 (237)
Q Consensus       151 ~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis  194 (237)
                         ..   -...|+|+...|.....++++++...++++..++-.
T Consensus        53 ---~~---~~~~DiIilavp~~~~~~vl~~l~~~l~~~~iv~~~   90 (165)
T d2f1ka2          53 ---SL---LQTAKIIFLCTPIQLILPTLEKLIPHLSPTAIVTDV   90 (165)
T ss_dssp             ---GG---GTTCSEEEECSCHHHHHHHHHHHGGGSCTTCEEEEC
T ss_pred             ---cc---ccccccccccCcHhhhhhhhhhhhhhcccccceeec
Confidence               01   247899999888888889999999999998877544

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.43  E-value=0.0031  Score=46.80  Aligned_cols=101  Identities=15%  Similarity=0.055  Sum_probs=62.3

Q ss_pred             ccCCCeEEEEcC--cchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccc
Q 026513           68 IKGGELFLDYGT--GSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVV  145 (237)
Q Consensus        68 ~~~~~~vLDlG~--G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  145 (237)
                      +++|++||-.|.  |.|.+++.+++.-..+++++..+++-.+.+++    .|...   -+.....|+.            
T Consensus        23 ~~~g~~VlI~ga~g~vG~~~iqla~~~g~~vi~~~~~~~~~~~l~~----~Ga~~---vi~~~~~~~~------------   83 (183)
T d1pqwa_          23 LSPGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREMLSR----LGVEY---VGDSRSVDFA------------   83 (183)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHT----TCCSE---EEETTCSTHH------------
T ss_pred             CCCCCEEEEECCCCCcccccchhhccccccceeeeccccccccccc----ccccc---cccCCccCHH------------
Confidence            578899999773  34677788886544568888888876666653    34331   1111111221            


Q ss_pred             cccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEecc
Q 026513          146 EDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGI  196 (237)
Q Consensus       146 ~~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~~  196 (237)
                      +     .+........+|+|+....-.    .+..+.+.|+++|+++..+.
T Consensus        84 ~-----~v~~~t~~~g~d~v~d~~g~~----~~~~~~~~l~~~G~~v~~G~  125 (183)
T d1pqwa_          84 D-----EILELTDGYGVDVVLNSLAGE----AIQRGVQILAPGGRFIELGK  125 (183)
T ss_dssp             H-----HHHHHTTTCCEEEEEECCCTH----HHHHHHHTEEEEEEEEECSC
T ss_pred             H-----HHHHHhCCCCEEEEEecccch----HHHHHHHHhcCCCEEEEEcc
Confidence            1     111222356899999876533    34566789999999998543

>d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.11  E-value=0.012  Score=46.64  Aligned_cols=108  Identities=15%  Similarity=0.077  Sum_probs=69.2

Q ss_pred             CCeE-EEEcCcchH---HHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccc
Q 026513           71 GELF-LDYGTGSGI---LGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVE  146 (237)
Q Consensus        71 ~~~v-LDlG~G~G~---~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  146 (237)
                      |+|| |--|+++|.   ++..+++.+..+|+.++-+++.++.+.+.++..+..     +.++..|+.+..   .+.++++
T Consensus         2 g~rVAlVTGas~GIG~a~A~~la~~~g~~Vi~~~r~~~~~~~~~~~l~~~~~~-----~~~~~~Dvs~~~---sv~~~~~   73 (275)
T d1wmaa1           2 GIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEGLS-----PRFHQLDIDDLQ---SIRALRD   73 (275)
T ss_dssp             CCCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHTTCC-----CEEEECCTTCHH---HHHHHHH
T ss_pred             CCeEEEECCCCCHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcCCc-----EEEEEEecCCHH---HHHHHHH
Confidence            6677 555666653   233455555678999999999999988888776643     667788886432   2222222


Q ss_pred             ccccccccCCCCCCceeEEEEeCCh-----------HHH-----------HHHHHHHhHhcCCCeEEEE
Q 026513          147 DLSSHKIRGISQTEKYDVVIANILL-----------NPL-----------LQLADHIVSYAKPGAVVGI  193 (237)
Q Consensus       147 ~~~~~~~~~~~~~~~fD~I~~n~~~-----------~~~-----------~~~l~~~~~~L~~gG~lii  193 (237)
                      ...+       .-++.|++|.|...           ..+           -.+.+.+...|+++|+++.
T Consensus        74 ~~~~-------~~g~iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~g~ivn  135 (275)
T d1wmaa1          74 FLRK-------EYGGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVN  135 (275)
T ss_dssp             HHHH-------HHSSEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEE
T ss_pred             HHHH-------hcCCcEEEEEcCCcCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc
Confidence            2100       12579999998742           011           1346777888899998876

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=96.06  E-value=0.01  Score=43.57  Aligned_cols=100  Identities=17%  Similarity=0.200  Sum_probs=61.7

Q ss_pred             hccCCCeEEEEcCcc-hHHHHHHHH-hCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccC-ccccccccccccc
Q 026513           67 LIKGGELFLDYGTGS-GILGIAAIK-FGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPD-RTFTASMNERVDG  143 (237)
Q Consensus        67 ~~~~~~~vLDlG~G~-G~~~~~la~-~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~-d~~~~~~~~~~~~  143 (237)
                      .+++|.+||-.|||. |.+++.+++ .|...|+++|.++.-++.+++.    |...   -+..... +..        ..
T Consensus        25 ~~~~G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~~k~~~ak~l----Ga~~---~i~~~~~~~~~--------~~   89 (176)
T d2fzwa2          25 KLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEF----GATE---CINPQDFSKPI--------QE   89 (176)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHH----TCSE---EECGGGCSSCH--------HH
T ss_pred             CCCCCCEEEEecchhHHHHHHHHHHHHhcCceEEEcccHHHHHHHHHh----CCcE---EEeCCchhhHH--------HH
Confidence            368999999999984 455555664 5889999999999988887754    4321   0111010 100        00


Q ss_pred             cccccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEE
Q 026513          144 VVEDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGI  193 (237)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~lii  193 (237)
                      .        +... ....+|+|+-...-.   ..++.+..++++||.+++
T Consensus        90 ~--------~~~~-~~~g~D~vid~~G~~---~~~~~~~~~~~~g~~~~~  127 (176)
T d2fzwa2          90 V--------LIEM-TDGGVDYSFECIGNV---KVMRAALEACHKGWGVSV  127 (176)
T ss_dssp             H--------HHHH-TTSCBSEEEECSCCH---HHHHHHHHTBCTTTCEEE
T ss_pred             H--------HHHH-cCCCCcEeeecCCCH---HHHHHHHHhhcCCceeEE
Confidence            0        0011 135799999876433   345667788888876654

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=95.79  E-value=0.019  Score=42.47  Aligned_cols=101  Identities=19%  Similarity=0.210  Sum_probs=65.2

Q ss_pred             ccCCCeEEEEcCcc--hHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccc
Q 026513           68 IKGGELFLDYGTGS--GILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVV  145 (237)
Q Consensus        68 ~~~~~~vLDlG~G~--G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  145 (237)
                      +++|++||-.|++.  |..++.+++....+|+++.-+++..+.+++.    +...   -+.....+..+           
T Consensus        27 v~~G~~VlV~ga~ggvG~~aiqlak~~Ga~vi~~~~~~~~~~~~~~~----Ga~~---vi~~~~~~~~~-----------   88 (182)
T d1v3va2          27 VKGGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLKQI----GFDA---AFNYKTVNSLE-----------   88 (182)
T ss_dssp             CCSSCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHT----TCSE---EEETTSCSCHH-----------
T ss_pred             CCCCCEEEEEeCCCchhHHHHHHHHccCCEEEEeCCCHHHHHHHHhh----hhhh---hcccccccHHH-----------
Confidence            67899999988865  4667778876567899999999877766654    4331   11111111110           


Q ss_pred             cccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEecc
Q 026513          146 EDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGI  196 (237)
Q Consensus       146 ~~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~~  196 (237)
                            ..........+|+|+-....    +.++...+.|+++|.+++.+.
T Consensus        89 ------~~~~~~~~~Gvd~v~D~vG~----~~~~~~~~~l~~~G~~v~~G~  129 (182)
T d1v3va2          89 ------EALKKASPDGYDCYFDNVGG----EFLNTVLSQMKDFGKIAICGA  129 (182)
T ss_dssp             ------HHHHHHCTTCEEEEEESSCH----HHHHHHGGGEEEEEEEEECCC
T ss_pred             ------HHHHHhhcCCCceeEEecCc----hhhhhhhhhccCCCeEEeecc
Confidence                  00011224579998875532    356788999999999998653

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=95.66  E-value=0.035  Score=43.50  Aligned_cols=84  Identities=18%  Similarity=0.245  Sum_probs=56.6

Q ss_pred             CCCeEEEEcCcchH---HHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccc
Q 026513           70 GGELFLDYGTGSGI---LGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVE  146 (237)
Q Consensus        70 ~~~~vLDlG~G~G~---~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  146 (237)
                      .|+++|-.|.++|.   ++..+++.|+ +|+.+|.+++.++.+.+.+...+..     +..+.+|+.+..   .+.++++
T Consensus         4 ~gK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~~~~~g~~-----~~~~~~Dv~~~~---~v~~~~~   74 (260)
T d1zema1           4 NGKVCLVTGAGGNIGLATALRLAEEGT-AIALLDMNREALEKAEASVREKGVE-----ARSYVCDVTSEE---AVIGTVD   74 (260)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTTSC-----EEEEECCTTCHH---HHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCc-----EEEEEccCCCHH---HHHHHHH
Confidence            48899999988773   4455666765 5999999999999888888766543     777788887532   1222222


Q ss_pred             ccccccccCCCCCCceeEEEEeC
Q 026513          147 DLSSHKIRGISQTEKYDVVIANI  169 (237)
Q Consensus       147 ~~~~~~~~~~~~~~~fD~I~~n~  169 (237)
                      ..       ...-+..|+++.|.
T Consensus        75 ~~-------~~~~g~iDilVnna   90 (260)
T d1zema1          75 SV-------VRDFGKIDFLFNNA   90 (260)
T ss_dssp             HH-------HHHHSCCCEEEECC
T ss_pred             HH-------HHHhCCCCeehhhh
Confidence            21       00125789999865

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.61  E-value=0.1  Score=40.46  Aligned_cols=85  Identities=15%  Similarity=0.186  Sum_probs=59.0

Q ss_pred             CCCeEEEEcCcch---HHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccc
Q 026513           70 GGELFLDYGTGSG---ILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVE  146 (237)
Q Consensus        70 ~~~~vLDlG~G~G---~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  146 (237)
                      .|+.+|-.|+++|   .++..+++.|. +|+.+|.+++.++...+.+...+.     ++..+.+|+.+..   .++++++
T Consensus         6 ~Gkv~lITGas~GIG~~ia~~la~~G~-~V~l~~r~~~~l~~~~~~~~~~~~-----~~~~~~~Dvs~~~---~v~~~~~   76 (244)
T d1yb1a_           6 TGEIVLITGAGHGIGRLTAYEFAKLKS-KLVLWDINKHGLEETAAKCKGLGA-----KVHTFVVDCSNRE---DIYSSAK   76 (244)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTC-----CEEEEECCTTCHH---HHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCC-----cEEEEEeeCCCHH---HHHHHHH
Confidence            5888999999988   35556677765 599999999999988888876553     3778888987642   2222222


Q ss_pred             ccccccccCCCCCCceeEEEEeCC
Q 026513          147 DLSSHKIRGISQTEKYDVVIANIL  170 (237)
Q Consensus       147 ~~~~~~~~~~~~~~~fD~I~~n~~  170 (237)
                      ...       ..-+..|+++.|..
T Consensus        77 ~i~-------~~~g~idilinnag   93 (244)
T d1yb1a_          77 KVK-------AEIGDVSILVNNAG   93 (244)
T ss_dssp             HHH-------HHTCCCSEEEECCC
T ss_pred             HHH-------HHcCCCceeEeecc
Confidence            210       11357999998775

>d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=95.60  E-value=0.048  Score=40.26  Aligned_cols=100  Identities=10%  Similarity=0.038  Sum_probs=63.6

Q ss_pred             ccCCCeEEEEcCcc--hHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccc
Q 026513           68 IKGGELFLDYGTGS--GILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVV  145 (237)
Q Consensus        68 ~~~~~~vLDlG~G~--G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  145 (237)
                      .++|.+||--|.+.  |.+++.+++.-..+|+++-.+++-.+.+++.    +...    +.-...+..            
T Consensus        29 ~~~g~~VLI~gaaGGVG~~aiQlak~~Ga~Viat~~s~~k~~~~~~l----Ga~~----vi~~~~~~~------------   88 (176)
T d1xa0a2          29 TPERGPVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAEHDYLRVL----GAKE----VLAREDVMA------------   88 (176)
T ss_dssp             CGGGCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTCHHHHHHT----TCSE----EEECC----------------
T ss_pred             CCCCCEEEEEeccchHHHHHHHHHHHcCCceEEecCchHHHHHHHhc----ccce----eeecchhHH------------
Confidence            45688999999654  5788888876566689999998887777643    3321    111111110            


Q ss_pred             cccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEeccC
Q 026513          146 EDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGIL  197 (237)
Q Consensus       146 ~~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~~~  197 (237)
                            .......++.+|+|+-+..-.    .+....+.|+++|+++..+..
T Consensus        89 ------~~~~~~~~~gvD~vid~vgg~----~~~~~l~~l~~~Griv~~G~~  130 (176)
T d1xa0a2          89 ------ERIRPLDKQRWAAAVDPVGGR----TLATVLSRMRYGGAVAVSGLT  130 (176)
T ss_dssp             -----------CCSCCEEEEEECSTTT----THHHHHHTEEEEEEEEECSCC
T ss_pred             ------HHHHHhhccCcCEEEEcCCch----hHHHHHHHhCCCceEEEeecc
Confidence                  000122356899888765433    357788899999999987554

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=95.47  E-value=0.018  Score=42.30  Aligned_cols=104  Identities=18%  Similarity=0.146  Sum_probs=61.0

Q ss_pred             hccCCCeEEEEcCcchH-HHHHHH-HhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccc
Q 026513           67 LIKGGELFLDYGTGSGI-LGIAAI-KFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGV  144 (237)
Q Consensus        67 ~~~~~~~vLDlG~G~G~-~~~~la-~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~  144 (237)
                      .+++|.+||-+|+|.+. ..+.++ ..+..+|+++|.++.-.+.+++.    +...    + +...+..+     .+...
T Consensus        25 ~vk~GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a~~~----Ga~~----~-i~~~~~~~-----~~~~~   90 (176)
T d2jhfa2          25 KVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEV----GATE----C-VNPQDYKK-----PIQEV   90 (176)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHT----TCSE----E-ECGGGCSS-----CHHHH
T ss_pred             CCCCCCEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHHHHHHHHHh----CCee----E-EecCCchh-----HHHHH
Confidence            37899999999998643 444444 45788999999999998888765    3221    1 11111000     00000


Q ss_pred             ccccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCC-eEEEEecc
Q 026513          145 VEDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPG-AVVGISGI  196 (237)
Q Consensus       145 ~~~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~g-G~liis~~  196 (237)
                              . .....+.+|+++-......   .+......++++ |.+++...
T Consensus        91 --------~-~~~~~~G~D~vid~~G~~~---~~~~a~~~~~~~~g~~~~~~~  131 (176)
T d2jhfa2          91 --------L-TEMSNGGVDFSFEVIGRLD---TMVTALSCCQEAYGVSVIVGV  131 (176)
T ss_dssp             --------H-HHHTTSCBSEEEECSCCHH---HHHHHHHHBCTTTCEEEECSC
T ss_pred             --------H-HHHhcCCCCEEEecCCchh---HHHHHHHHHhcCCcceEEecC
Confidence                    0 1112457999998764443   334455667775 66666544

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=95.36  E-value=0.048  Score=42.47  Aligned_cols=85  Identities=12%  Similarity=0.135  Sum_probs=54.9

Q ss_pred             CCCeEEEEcCcchH---HHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccc
Q 026513           70 GGELFLDYGTGSGI---LGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVE  146 (237)
Q Consensus        70 ~~~~vLDlG~G~G~---~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  146 (237)
                      .++.+|-.|.++|.   ++..+++.| .+|+.+|.+++.++.+.+.+...+..     +.++..|+.+..   .+..+++
T Consensus         9 enKvalITGas~GIG~a~a~~la~~G-a~V~~~~r~~~~l~~~~~~l~~~g~~-----~~~~~~Dvt~~~---~v~~~~~   79 (251)
T d2c07a1           9 ENKVALVTGAGRGIGREIAKMLAKSV-SHVICISRTQKSCDSVVDEIKSFGYE-----SSGYAGDVSKKE---EISEVIN   79 (251)
T ss_dssp             SSCEEEEESTTSHHHHHHHHHHTTTS-SEEEEEESSHHHHHHHHHHHHTTTCC-----EEEEECCTTCHH---HHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcC-CEEEEEECCHHHHHHHHHHHHhcCCc-----EEEEEccCCCHH---HHHHHHH
Confidence            47788888977762   233334455 46999999999999888887765533     777788887532   1222222


Q ss_pred             ccccccccCCCCCCceeEEEEeCC
Q 026513          147 DLSSHKIRGISQTEKYDVVIANIL  170 (237)
Q Consensus       147 ~~~~~~~~~~~~~~~fD~I~~n~~  170 (237)
                      ..       ...-++.|+++.|..
T Consensus        80 ~~-------~~~~g~iDilvnnag   96 (251)
T d2c07a1          80 KI-------LTEHKNVDILVNNAG   96 (251)
T ss_dssp             HH-------HHHCSCCCEEEECCC
T ss_pred             HH-------HHhcCCceeeeeccc
Confidence            21       011368999998775

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

Probab=95.35  E-value=0.075  Score=41.50  Aligned_cols=86  Identities=13%  Similarity=0.099  Sum_probs=56.9

Q ss_pred             CCCeEEEEcCcchH---HHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccc
Q 026513           70 GGELFLDYGTGSGI---LGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVE  146 (237)
Q Consensus        70 ~~~~vLDlG~G~G~---~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  146 (237)
                      .|+++|-.|+++|.   ++..+++.|. +|+.+|.+++.++.+.+.+...+.     ++.++.+|+.+..   .+.++++
T Consensus         7 ~GK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~~~~~g~-----~~~~~~~Dv~~~~---~v~~~~~   77 (259)
T d2ae2a_           7 EGCTALVTGGSRGIGYGIVEELASLGA-SVYTCSRNQKELNDCLTQWRSKGF-----KVEASVCDLSSRS---ERQELMN   77 (259)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTC-----EEEEEECCTTCHH---HHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCC-----CceEEEeeCCCHH---HHHHHHH
Confidence            58899999988773   4455666765 699999999999888887776653     3667788886432   1222222


Q ss_pred             ccccccccCCCCCCceeEEEEeCC
Q 026513          147 DLSSHKIRGISQTEKYDVVIANIL  170 (237)
Q Consensus       147 ~~~~~~~~~~~~~~~fD~I~~n~~  170 (237)
                      ..    ...  ...+.|+++.|..
T Consensus        78 ~~----~~~--~~~~idilvnnAG   95 (259)
T d2ae2a_          78 TV----ANH--FHGKLNILVNNAG   95 (259)
T ss_dssp             HH----HHH--TTTCCCEEEECCC
T ss_pred             HH----HHH--hCCCceEEEECCc
Confidence            11    000  1347999998764

>d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNMT2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.31  E-value=0.01  Score=47.98  Aligned_cols=74  Identities=12%  Similarity=0.095  Sum_probs=50.6

Q ss_pred             CeEEEEcCcchHHHHHHHHhCCC--eEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccccc
Q 026513           72 ELFLDYGTGSGILGIAAIKFGAA--MSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDLS  149 (237)
Q Consensus        72 ~~vLDlG~G~G~~~~~la~~~~~--~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~  149 (237)
                      .+|+|+.||.|.+...+.+.|..  -+.++|+++.+++..+.|...         ..++.+|+.+....           
T Consensus         3 ~kv~~lF~G~Gg~~~gl~~aG~~~~~~~a~E~~~~a~~~~~~n~~~---------~~~~~~di~~~~~~-----------   62 (343)
T d1g55a_           3 LRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFPH---------TQLLAKTIEGITLE-----------   62 (343)
T ss_dssp             EEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCTT---------SCEECSCGGGCCHH-----------
T ss_pred             CEEEEcCcCccHHHHHHHHcCCCCeEEEEEECCHHHHHHHHHHCCC---------CCcccCchhhCCHh-----------
Confidence            47999999999998888777763  377999999998888876321         23445665432111           


Q ss_pred             cccccCCCCCCceeEEEEeCCh
Q 026513          150 SHKIRGISQTEKYDVVIANILL  171 (237)
Q Consensus       150 ~~~~~~~~~~~~fD~I~~n~~~  171 (237)
                           .+ +....|+++..+|.
T Consensus        63 -----~~-~~~~~Dll~ggpPC   78 (343)
T d1g55a_          63 -----EF-DRLSFDMILMSPPC   78 (343)
T ss_dssp             -----HH-HHHCCSEEEECCC-
T ss_pred             -----Hc-CCCCccEEEeeccc
Confidence                 01 12368999999983

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=95.31  E-value=0.1  Score=40.74  Aligned_cols=86  Identities=12%  Similarity=0.103  Sum_probs=57.4

Q ss_pred             CCCeEEEEcCcchH---HHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccc
Q 026513           70 GGELFLDYGTGSGI---LGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVE  146 (237)
Q Consensus        70 ~~~~vLDlG~G~G~---~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  146 (237)
                      +|+++|-.|++.|.   ++..+++.|. +|+.++.++..++.+.+.+...+..     +.++..|+.+..   .++++++
T Consensus         5 ~gK~alITGas~GIG~aia~~la~~G~-~V~i~~r~~~~l~~~~~~~~~~~~~-----~~~~~~D~s~~~---~~~~~~~   75 (258)
T d1ae1a_           5 KGTTALVTGGSKGIGYAIVEELAGLGA-RVYTCSRNEKELDECLEIWREKGLN-----VEGSVCDLLSRT---ERDKLMQ   75 (258)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCC-----EEEEECCTTCHH---HHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCC-----ceEEEeecCCHH---HHHHHHH
Confidence            58899999998773   4445566665 6999999999999888888877644     667788886532   1222221


Q ss_pred             ccccccccCCCCCCceeEEEEeCC
Q 026513          147 DLSSHKIRGISQTEKYDVVIANIL  170 (237)
Q Consensus       147 ~~~~~~~~~~~~~~~fD~I~~n~~  170 (237)
                      ..    ...  ..++.|+++.|..
T Consensus        76 ~~----~~~--~~g~idilinnag   93 (258)
T d1ae1a_          76 TV----AHV--FDGKLNILVNNAG   93 (258)
T ss_dssp             HH----HHH--TTSCCCEEEECCC
T ss_pred             HH----HHH--hCCCcEEEecccc
Confidence            11    001  1357899888664

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=95.21  E-value=0.02  Score=42.01  Aligned_cols=96  Identities=11%  Similarity=0.054  Sum_probs=60.3

Q ss_pred             hccCCCeEEEEcC-cc-hHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccc
Q 026513           67 LIKGGELFLDYGT-GS-GILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGV  144 (237)
Q Consensus        67 ~~~~~~~vLDlG~-G~-G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~  144 (237)
                      .+++|++||-.|. |. |..++.+++....+|++++.+++.++.+++    .|...    +. -..+..           
T Consensus        24 ~~~~g~~VlI~ga~G~vG~~aiqlak~~G~~vi~~~~~~~~~~~~~~----lGa~~----~i-~~~~~~-----------   83 (171)
T d1iz0a2          24 QARPGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPLA----LGAEE----AA-TYAEVP-----------   83 (171)
T ss_dssp             TCCTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHHHH----TTCSE----EE-EGGGHH-----------
T ss_pred             CCCCCCEEEEEeccccchhhhhhhhcccccccccccccccccccccc----cccce----ee-ehhhhh-----------
Confidence            4688999999884 43 677777887645579999999987777664    34331    21 011110           


Q ss_pred             ccccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEecc
Q 026513          145 VEDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGI  196 (237)
Q Consensus       145 ~~~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~~  196 (237)
                               ........+|+|+--. -.    .+....+.|+|+|.++.-+.
T Consensus        84 ---------~~~~~~~g~D~v~d~~-G~----~~~~~~~~l~~~G~~v~~G~  121 (171)
T d1iz0a2          84 ---------ERAKAWGGLDLVLEVR-GK----EVEESLGLLAHGGRLVYIGA  121 (171)
T ss_dssp             ---------HHHHHTTSEEEEEECS-CT----THHHHHTTEEEEEEEEEC--
T ss_pred             ---------hhhhcccccccccccc-ch----hHHHHHHHHhcCCcEEEEeC
Confidence                     0111245799988532 22    24567789999999998654

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

Probab=95.17  E-value=0.043  Score=43.22  Aligned_cols=87  Identities=17%  Similarity=0.203  Sum_probs=57.7

Q ss_pred             CCCeEEEEcCcch---HHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccc
Q 026513           70 GGELFLDYGTGSG---ILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVE  146 (237)
Q Consensus        70 ~~~~vLDlG~G~G---~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  146 (237)
                      .|+++|-.|+++|   .++..+++.|. +|+.+|.+++.++.+.+.+...+....  ++.++.+|+.+..   .++++++
T Consensus         4 ~gK~alVTGas~GIG~aia~~la~~Ga-~V~l~~r~~~~l~~~~~~l~~~~~~~~--~~~~~~~Dvs~~~---~v~~~~~   77 (272)
T d1xkqa_           4 SNKTVIITGSSNGIGRTTAILFAQEGA-NVTITGRSSERLEETRQIILKSGVSEK--QVNSVVADVTTED---GQDQIIN   77 (272)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTTCCGG--GEEEEECCTTSHH---HHHHHHH
T ss_pred             CCCEEEEeCcCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCCC--ceEEEEccCCCHH---HHHHHHH
Confidence            4788999998877   34455666765 699999999999998888877654432  4777888887532   1222222


Q ss_pred             ccccccccCCCCCCceeEEEEeC
Q 026513          147 DLSSHKIRGISQTEKYDVVIANI  169 (237)
Q Consensus       147 ~~~~~~~~~~~~~~~fD~I~~n~  169 (237)
                      ..       ...-++.|+++.|.
T Consensus        78 ~~-------~~~~g~iDilvnnA   93 (272)
T d1xkqa_          78 ST-------LKQFGKIDVLVNNA   93 (272)
T ss_dssp             HH-------HHHHSCCCEEEECC
T ss_pred             HH-------HHHhCCceEEEeCC
Confidence            21       00125789999874

>d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=95.08  E-value=0.076  Score=41.50  Aligned_cols=86  Identities=13%  Similarity=0.073  Sum_probs=57.3

Q ss_pred             CCCeEEEEcCcchH---HHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccc
Q 026513           70 GGELFLDYGTGSGI---LGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVE  146 (237)
Q Consensus        70 ~~~~vLDlG~G~G~---~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  146 (237)
                      +|+++|-.|+++|.   ++..+++.|. +|+.+|.++..++.+.+.+...+..     +..+..|+.+..   .+.++++
T Consensus         7 kgK~alVTGas~GIG~aiA~~la~~Ga-~V~~~~r~~~~l~~~~~~~~~~~~~-----~~~~~~Dv~~~~---~v~~~~~   77 (259)
T d1xq1a_           7 KAKTVLVTGGTKGIGHAIVEEFAGFGA-VIHTCARNEYELNECLSKWQKKGFQ-----VTGSVCDASLRP---EREKLMQ   77 (259)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCC-----EEEEECCTTSHH---HHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCc-----eEEEeccCCCHH---HHHHHHH
Confidence            58899999988874   4555666765 6999999999998888777765532     777788876432   1222222


Q ss_pred             ccccccccCCCCCCceeEEEEeCC
Q 026513          147 DLSSHKIRGISQTEKYDVVIANIL  170 (237)
Q Consensus       147 ~~~~~~~~~~~~~~~fD~I~~n~~  170 (237)
                      ..    ...  ..++.|+++.|..
T Consensus        78 ~~----~~~--~~g~idilvnnAG   95 (259)
T d1xq1a_          78 TV----SSM--FGGKLDILINNLG   95 (259)
T ss_dssp             HH----HHH--HTTCCSEEEEECC
T ss_pred             HH----HHH--hCCCccccccccc
Confidence            21    000  1367999999875

>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein F25D1.5
species: Caenorhabditis elegans [TaxId: 6239]

Probab=94.92  E-value=0.072  Score=41.94  Aligned_cols=87  Identities=18%  Similarity=0.258  Sum_probs=57.2

Q ss_pred             CCCeEEEEcCcchH---HHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccc
Q 026513           70 GGELFLDYGTGSGI---LGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVE  146 (237)
Q Consensus        70 ~~~~vLDlG~G~G~---~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  146 (237)
                      .|+++|-.|+++|.   ++..+++.|. +|+.+|.+++.++.+.+.+...+....  ++..+.+|+.+..-   +.++++
T Consensus         3 ~gK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~i~~~~~~~~--~~~~~~~Dv~~~~~---v~~~~~   76 (274)
T d1xhla_           3 SGKSVIITGSSNGIGRSAAVIFAKEGA-QVTITGRNEDRLEETKQQILKAGVPAE--KINAVVADVTEASG---QDDIIN   76 (274)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCGG--GEEEEECCTTSHHH---HHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHcCCCCc--ceEEEEeeCCCHHH---HHHHHH
Confidence            47889999988873   4445556665 599999999999988888877664321  47788888875321   122222


Q ss_pred             ccccccccCCCCCCceeEEEEeC
Q 026513          147 DLSSHKIRGISQTEKYDVVIANI  169 (237)
Q Consensus       147 ~~~~~~~~~~~~~~~fD~I~~n~  169 (237)
                      ..       ...-++.|+++.|.
T Consensus        77 ~~-------~~~~G~iDilVnnA   92 (274)
T d1xhla_          77 TT-------LAKFGKIDILVNNA   92 (274)
T ss_dssp             HH-------HHHHSCCCEEEECC
T ss_pred             HH-------HHHcCCceEEEeec
Confidence            11       00125789999875

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=94.80  E-value=0.085  Score=40.99  Aligned_cols=85  Identities=16%  Similarity=0.150  Sum_probs=54.3

Q ss_pred             CCCeEEEEcCcchH---HHHHHHHhCCCeEEEEeCCHHHHHHHHHHHH-HcCCCCCcceEEeccCccccccccccccccc
Q 026513           70 GGELFLDYGTGSGI---LGIAAIKFGAAMSVGADIDPQAIKSAHQNAA-LNNIGPKKMKLHLVPDRTFTASMNERVDGVV  145 (237)
Q Consensus        70 ~~~~vLDlG~G~G~---~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~-~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  145 (237)
                      .|+++|-.|++.|.   ++..+++.|. +|+.+|.+++.++.+.+.+. ..+.     ++.++.+|+.+..   .+.+++
T Consensus         4 ~gK~~lITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~~~~~~~~l~~~~g~-----~~~~~~~Dv~~~~---~v~~~~   74 (251)
T d1vl8a_           4 RGRVALVTGGSRGLGFGIAQGLAEAGC-SVVVASRNLEEASEAAQKLTEKYGV-----ETMAFRCDVSNYE---EVKKLL   74 (251)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHHCC-----CEEEEECCTTCHH---HHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHHhCC-----cEEEEEccCCCHH---HHHHHH
Confidence            47899999988873   4455666765 59999999988877665553 3342     2677788887532   222222


Q ss_pred             cccccccccCCCCCCceeEEEEeCC
Q 026513          146 EDLSSHKIRGISQTEKYDVVIANIL  170 (237)
Q Consensus       146 ~~~~~~~~~~~~~~~~fD~I~~n~~  170 (237)
                      +...       ..-++.|++|.|..
T Consensus        75 ~~~~-------~~~g~iDiLVnnAG   92 (251)
T d1vl8a_          75 EAVK-------EKFGKLDTVVNAAG   92 (251)
T ss_dssp             HHHH-------HHHSCCCEEEECCC
T ss_pred             HHHH-------HHcCCCCEEEECCC
Confidence            2210       00257999998764

>d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,6,8-tetrahydroxynaphthalene reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=94.72  E-value=0.059  Score=42.04  Aligned_cols=86  Identities=19%  Similarity=0.158  Sum_probs=55.8

Q ss_pred             CCCeEEEEcCcch---HHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccc
Q 026513           70 GGELFLDYGTGSG---ILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVE  146 (237)
Q Consensus        70 ~~~~vLDlG~G~G---~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  146 (237)
                      .|+++|-.|.++|   .++..+++.|..-++....++..++.+.+.+...+..     +.++..|+.+..   .+.++++
T Consensus         5 ~GK~alITGas~GIG~aia~~la~~G~~Vvi~~~~~~~~~~~~~~~~~~~g~~-----~~~~~~D~~~~~---~v~~~~~   76 (259)
T d1ja9a_           5 AGKVALTTGAGRGIGRGIAIELGRRGASVVVNYGSSSKAAEEVVAELKKLGAQ-----GVAIQADISKPS---EVVALFD   76 (259)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCC-----EEEEECCTTSHH---HHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEcCCChHHHHHHHHHHHHcCCC-----ceEecCCCCCHH---HHHHHHH
Confidence            5889998887766   3445566667664555678888888888888877643     778888886432   1222222


Q ss_pred             ccccccccCCCCCCceeEEEEeCC
Q 026513          147 DLSSHKIRGISQTEKYDVVIANIL  170 (237)
Q Consensus       147 ~~~~~~~~~~~~~~~fD~I~~n~~  170 (237)
                      ...       ..-+..|+++.|..
T Consensus        77 ~~~-------~~~g~idilinnag   93 (259)
T d1ja9a_          77 KAV-------SHFGGLDFVMSNSG   93 (259)
T ss_dssp             HHH-------HHHSCEEEEECCCC
T ss_pred             HHH-------HHcCCCcEEEeccc
Confidence            210       01257999998774

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

Probab=94.62  E-value=0.11  Score=40.46  Aligned_cols=86  Identities=14%  Similarity=0.165  Sum_probs=56.5

Q ss_pred             CCCeEEEEcCcchH---HHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccc
Q 026513           70 GGELFLDYGTGSGI---LGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVE  146 (237)
Q Consensus        70 ~~~~vLDlG~G~G~---~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  146 (237)
                      .|+++|-.|+++|.   ++..+++.|. +|+.+|.+++.++.+.+.+...+...   ++..+.+|+.+..   .+.++++
T Consensus         3 ~gK~alITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~l~~~~~~~~~~~~~~---~~~~~~~Dvt~~~---~v~~~~~   75 (258)
T d1iy8a_           3 TDRVVLITGGGSGLGRATAVRLAAEGA-KLSLVDVSSEGLEASKAAVLETAPDA---EVLTTVADVSDEA---QVEAYVT   75 (258)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHCTTC---CEEEEECCTTSHH---HHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhhCCCC---eEEEEeccCCCHH---HHHHHHH
Confidence            47889999988873   4556667765 59999999999988777766554332   3777888887532   1222222


Q ss_pred             ccccccccCCCCCCceeEEEEeC
Q 026513          147 DLSSHKIRGISQTEKYDVVIANI  169 (237)
Q Consensus       147 ~~~~~~~~~~~~~~~fD~I~~n~  169 (237)
                      ...       ..-++.|++|.|.
T Consensus        76 ~~~-------~~~G~iDiLVnnA   91 (258)
T d1iy8a_          76 ATT-------ERFGRIDGFFNNA   91 (258)
T ss_dssp             HHH-------HHHSCCSEEEECC
T ss_pred             HHH-------HHhCCCCEEEECC
Confidence            210       0025789999865

>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase)
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=94.59  E-value=0.11  Score=40.63  Aligned_cols=108  Identities=15%  Similarity=0.126  Sum_probs=65.9

Q ss_pred             CCCeEEEEcCcchH---HHHHHHHhCCCeEEEEeCC-HHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccc
Q 026513           70 GGELFLDYGTGSGI---LGIAAIKFGAAMSVGADID-PQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVV  145 (237)
Q Consensus        70 ~~~~vLDlG~G~G~---~~~~la~~~~~~v~~vD~s-~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  145 (237)
                      .|+++|-.|+++|.   ++..+++.|. +|+.+|.+ ++.++.+.+.+...+..     +.++..|..+..   .+.+++
T Consensus        17 ~gK~~lITGas~GIG~aia~~la~~Ga-~Vvi~~~~~~~~~~~~~~~~~~~g~~-----~~~~~~D~~~~~---~v~~~~   87 (272)
T d1g0oa_          17 EGKVALVTGAGRGIGREMAMELGRRGC-KVIVNYANSTESAEEVVAAIKKNGSD-----AACVKANVGVVE---DIVRMF   87 (272)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTCC-----EEEEECCTTCHH---HHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEeCCchHHHHHHHHHHHhhCCc-----eeeEeCCCCCHH---HHHHHH
Confidence            48899999998873   4455666654 48888876 55666666666666543     777788886432   223333


Q ss_pred             cccccccccCCCCCCceeEEEEeCCh----------------------HHHHHHHHHHhHhcCCCeEEEE
Q 026513          146 EDLSSHKIRGISQTEKYDVVIANILL----------------------NPLLQLADHIVSYAKPGAVVGI  193 (237)
Q Consensus       146 ~~~~~~~~~~~~~~~~fD~I~~n~~~----------------------~~~~~~l~~~~~~L~~gG~lii  193 (237)
                      +...+       .-++.|+++.|...                      ...-.+.+.+...|+.+|.+++
T Consensus        88 ~~~~~-------~~g~idilV~nag~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~m~~~g~~i~  150 (272)
T d1g0oa_          88 EEAVK-------IFGKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLIL  150 (272)
T ss_dssp             HHHHH-------HHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTTCEEEE
T ss_pred             HHHHH-------HhCCCCccccccccchhhhhhhhhhhHHHHHhhhccceeeeecccccccccccccccc
Confidence            32100       12578999987641                      1111335666677777766665

>d2py6a1 c.66.1.56 (A:14-408) Methyltransferase FkbM {Methylobacillus flagellatus [TaxId: 405]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: FkbM-like
domain: Methyltransferase FkbM
species: Methylobacillus flagellatus [TaxId: 405]

Probab=94.31  E-value=0.08  Score=44.18  Aligned_cols=52  Identities=12%  Similarity=-0.018  Sum_probs=43.3

Q ss_pred             cCCCeEEEEcCcchHHHHHHHHh---CCCeEEEEeCCHHHHHHHHHHHHHcCCCC
Q 026513           69 KGGELFLDYGTGSGILGIAAIKF---GAAMSVGADIDPQAIKSAHQNAALNNIGP  120 (237)
Q Consensus        69 ~~~~~vLDlG~G~G~~~~~la~~---~~~~v~~vD~s~~~i~~a~~~~~~~~~~~  120 (237)
                      .++..++|+|+-.|..+..++..   ...+|+++|.++...+..++|+..++..+
T Consensus       211 ~kn~vfIDVGAniG~~s~~f~~~~~~~~~kV~aFEP~p~n~~~LkkNi~~n~~~n  265 (395)
T d2py6a1         211 SDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRRYTDTN  265 (395)
T ss_dssp             CSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHHTTTST
T ss_pred             CCCCEEEECCcCCCHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHHHHhccccc
Confidence            35679999999999988877643   24689999999999999999998877654

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=94.15  E-value=0.29  Score=33.64  Aligned_cols=91  Identities=15%  Similarity=0.066  Sum_probs=53.6

Q ss_pred             eEEEEcCcchHHHHHHHH---hCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccccc
Q 026513           73 LFLDYGTGSGILGIAAIK---FGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDLS  149 (237)
Q Consensus        73 ~vLDlG~G~G~~~~~la~---~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~  149 (237)
                      +|+-+|+  |.++..+++   .....|+.+|.+++.++.+++.   .+       ..++.+|..+...-           
T Consensus         2 ~IvI~G~--G~~G~~la~~L~~~g~~v~vid~d~~~~~~~~~~---~~-------~~vi~Gd~~~~~~l-----------   58 (132)
T d1lssa_           2 YIIIAGI--GRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAE---ID-------ALVINGDCTKIKTL-----------   58 (132)
T ss_dssp             EEEEECC--SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH---CS-------SEEEESCTTSHHHH-----------
T ss_pred             EEEEECC--CHHHHHHHHHHHHCCCCcceecCChhhhhhhhhh---hh-------hhhccCcccchhhh-----------
Confidence            5666776  445444442   2245699999999988876543   12       45678887643211           


Q ss_pred             cccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEE
Q 026513          150 SHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVV  191 (237)
Q Consensus       150 ~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~l  191 (237)
                          ... .-..+|.+++-..-+...-++....+.+.+.-.+
T Consensus        59 ----~~~-~i~~a~~vv~~t~~d~~N~~~~~~~k~~~~~~iI   95 (132)
T d1lssa_          59 ----EDA-GIEDADMYIAVTGKEEVNLMSSLLAKSYGINKTI   95 (132)
T ss_dssp             ----HHT-TTTTCSEEEECCSCHHHHHHHHHHHHHTTCCCEE
T ss_pred             ----hhc-ChhhhhhhcccCCcHHHHHHHHHHHHHcCCceEE
Confidence                111 1357898888555444333445556667777443

>d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: R-specific alcohol dehydrogenase
species: Lactobacillus brevis [TaxId: 1580]

Probab=94.11  E-value=0.077  Score=41.24  Aligned_cols=84  Identities=10%  Similarity=0.088  Sum_probs=53.2

Q ss_pred             CCCeEEEEcCcchH---HHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccc
Q 026513           70 GGELFLDYGTGSGI---LGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVE  146 (237)
Q Consensus        70 ~~~~vLDlG~G~G~---~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  146 (237)
                      .|+++|-.|.+.|.   ++..+++.|. +|+.+|.+++.++.+.+.+...   .   ++.++.+|+.+..-   +.++++
T Consensus         5 ~gK~alVTGas~GIG~aia~~la~~Ga-~V~~~~r~~~~~~~~~~~~~~~---~---~~~~~~~Dv~~~~~---v~~~~~   74 (251)
T d1zk4a1           5 DGKVAIITGGTLGIGLAIATKFVEEGA-KVMITGRHSDVGEKAAKSVGTP---D---QIQFFQHDSSDEDG---WTKLFD   74 (251)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCCT---T---TEEEEECCTTCHHH---HHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhCCC---C---cEEEEEccCCCHHH---HHHHHH
Confidence            47889999987773   3445566665 5999999998888777665321   1   37778889875321   222222


Q ss_pred             ccccccccCCCCCCceeEEEEeCC
Q 026513          147 DLSSHKIRGISQTEKYDVVIANIL  170 (237)
Q Consensus       147 ~~~~~~~~~~~~~~~fD~I~~n~~  170 (237)
                      ...       ..-++.|++|.|..
T Consensus        75 ~~~-------~~~G~iDiLVnnAg   91 (251)
T d1zk4a1          75 ATE-------KAFGPVSTLVNNAG   91 (251)
T ss_dssp             HHH-------HHHSSCCEEEECCC
T ss_pred             HHH-------HHhCCceEEEeccc
Confidence            210       00257899998764

>d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Streptomyces coelicolor [TaxId: 1902]

Probab=94.05  E-value=0.11  Score=40.38  Aligned_cols=84  Identities=14%  Similarity=0.136  Sum_probs=55.9

Q ss_pred             CCeEEEEcCcchH---HHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccc
Q 026513           71 GELFLDYGTGSGI---LGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVED  147 (237)
Q Consensus        71 ~~~vLDlG~G~G~---~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  147 (237)
                      |+.+|-.|++.|.   ++..+++.|. +|+.+|.+++.++.+.+.+...+..     +.++.+|+.+..   .++++++.
T Consensus         2 gKValITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~l~~~~~~l~~~g~~-----~~~~~~Dvs~~~---~v~~~~~~   72 (257)
T d2rhca1           2 SEVALVTGATSGIGLEIARRLGKEGL-RVFVCARGEEGLRTTLKELREAGVE-----ADGRTCDVRSVP---EIEALVAA   72 (257)
T ss_dssp             CCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCC-----EEEEECCTTCHH---HHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCc-----EEEEEeecCCHH---HHHHHHHH
Confidence            6677888887773   4445566665 5999999999999888888766543     778888987532   22223222


Q ss_pred             cccccccCCCCCCceeEEEEeCC
Q 026513          148 LSSHKIRGISQTEKYDVVIANIL  170 (237)
Q Consensus       148 ~~~~~~~~~~~~~~fD~I~~n~~  170 (237)
                      .       ...-++.|++|.|..
T Consensus        73 ~-------~~~~g~iDilVnnAG   88 (257)
T d2rhca1          73 V-------VERYGPVDVLVNNAG   88 (257)
T ss_dssp             H-------HHHTCSCSEEEECCC
T ss_pred             H-------HHHhCCCCEEEeccc
Confidence            1       011257999998764

>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase (5l265)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=94.03  E-value=0.17  Score=39.30  Aligned_cols=87  Identities=14%  Similarity=0.207  Sum_probs=57.1

Q ss_pred             CCCeEEEEcCcchH---HHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccc
Q 026513           70 GGELFLDYGTGSGI---LGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVE  146 (237)
Q Consensus        70 ~~~~vLDlG~G~G~---~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  146 (237)
                      .|+.+|-.|++.|.   ++..+++.|. +|+.+|.+++.++.+.+.+...+....  ++.++.+|+.+..-   ++++++
T Consensus         4 ~gKvalVTGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~l~~~~~~~~--~~~~~~~Dvt~~~~---v~~~~~   77 (264)
T d1spxa_           4 AEKVAIITGSSNGIGRATAVLFAREGA-KVTITGRHAERLEETRQQILAAGVSEQ--NVNSVVADVTTDAG---QDEILS   77 (264)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCGG--GEEEEECCTTSHHH---HHHHHH
T ss_pred             CCCEEEEeCcCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCcC--ceEEEEccCCCHHH---HHHHHH
Confidence            47888998988773   4455666765 599999999999988888877654422  37778888864321   222222


Q ss_pred             ccccccccCCCCCCceeEEEEeC
Q 026513          147 DLSSHKIRGISQTEKYDVVIANI  169 (237)
Q Consensus       147 ~~~~~~~~~~~~~~~fD~I~~n~  169 (237)
                      ..       ...-++.|+++.|.
T Consensus        78 ~~-------~~~~g~iDilvnnA   93 (264)
T d1spxa_          78 TT-------LGKFGKLDILVNNA   93 (264)
T ss_dssp             HH-------HHHHSCCCEEEECC
T ss_pred             HH-------HHHhCCCCEeeccc
Confidence            21       00125789998874

>d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhfP
species: Bacillus subtilis [TaxId: 1423]

Probab=93.79  E-value=0.2  Score=36.38  Aligned_cols=101  Identities=11%  Similarity=0.093  Sum_probs=62.5

Q ss_pred             ccCCCeEEEEcCc--chHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccc
Q 026513           68 IKGGELFLDYGTG--SGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVV  145 (237)
Q Consensus        68 ~~~~~~vLDlG~G--~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  145 (237)
                      .+++.+||--|++  .|.+++.+++.-..+|+++.-+++-.+.+++.    +...    +... .|...           
T Consensus        21 ~~~~~~VLV~gaaGgVG~~avQlAk~~Ga~Viat~~s~~k~~~~~~l----Gad~----vi~~-~~~~~-----------   80 (167)
T d1tt7a2          21 SPEKGSVLVTGATGGVGGIAVSMLNKRGYDVVASTGNREAADYLKQL----GASE----VISR-EDVYD-----------   80 (167)
T ss_dssp             CGGGCCEEEESTTSHHHHHHHHHHHHHTCCEEEEESSSSTHHHHHHH----TCSE----EEEH-HHHCS-----------
T ss_pred             CCCCCEEEEeCCcchHHHHHHHHHHHcCCceEEEecCHHHHHHHHhh----cccc----eEec-cchhc-----------
Confidence            4456678877743  46788888876345699999998877776554    4331    2111 11110           


Q ss_pred             cccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEeccCC
Q 026513          146 EDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILS  198 (237)
Q Consensus       146 ~~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~~~~  198 (237)
                           ..+ .....+.+|+|+-...-.    .+....+.|+++|++++.+...
T Consensus        81 -----~~~-~~~~~~gvd~vid~vgg~----~~~~~~~~l~~~G~iv~~G~~~  123 (167)
T d1tt7a2          81 -----GTL-KALSKQQWQGAVDPVGGK----QLASLLSKIQYGGSVAVSGLTG  123 (167)
T ss_dssp             -----SCC-CSSCCCCEEEEEESCCTH----HHHHHHTTEEEEEEEEECCCSS
T ss_pred             -----hhh-hcccCCCceEEEecCcHH----HHHHHHHHhccCceEEEeeccC
Confidence                 001 112246799988665333    4567888999999999876543

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=93.78  E-value=0.3  Score=35.15  Aligned_cols=118  Identities=19%  Similarity=0.151  Sum_probs=67.5

Q ss_pred             CeEEEEcCcchHHH--HHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccccc
Q 026513           72 ELFLDYGTGSGILG--IAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDLS  149 (237)
Q Consensus        72 ~~vLDlG~G~G~~~--~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~  149 (237)
                      +++.-+|+|.-..+  ..|++.|. .|+.+|.++..++..++.-... .................               
T Consensus         2 k~iaIiGaG~~G~~~A~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~---------------   64 (184)
T d1bg6a2           2 KTYAVLGLGNGGHAFAAYLALKGQ-SVLAWDIDAQRIKEIQDRGAII-AEGPGLAGTAHPDLLTS---------------   64 (184)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHHTSEE-EESSSCCEEECCSEEES---------------
T ss_pred             CEEEEECccHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHcCCCc-hhhhhhhhhhhhhhhhh---------------
Confidence            57888999985443  44556654 6999999998877665431100 00000001110100000               


Q ss_pred             cccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEeccCCCCHHHHHHHHhh
Q 026513          150 SHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILSEQLPHIINRYSE  210 (237)
Q Consensus       150 ~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~~~~~~~~~~~~~~~~  210 (237)
                        ++...  -..+|+|++..+-.....+++.+..+++++..++++.-...........+..
T Consensus        65 --~~~e~--~~~aD~iii~v~~~~~~~~~~~i~~~l~~~~~iv~~~g~~~~~~~~~~~~~~  121 (184)
T d1bg6a2          65 --DIGLA--VKDADVILIVVPAIHHASIAANIASYISEGQLIILNPGATGGALEFRKILRE  121 (184)
T ss_dssp             --CHHHH--HTTCSEEEECSCGGGHHHHHHHHGGGCCTTCEEEESSCCSSHHHHHHHHHHH
T ss_pred             --hhHhH--hcCCCEEEEEEchhHHHHHHHHhhhccCCCCEEEEeCCCCccHHHHHHHHHH
Confidence              00000  1468999988877777889999999999999877653333333444444443

>d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

Probab=93.76  E-value=0.15  Score=37.58  Aligned_cols=110  Identities=7%  Similarity=0.010  Sum_probs=57.9

Q ss_pred             ccCCCeEEEEcCc---chHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccc
Q 026513           68 IKGGELFLDYGTG---SGILGIAAIKF-GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDG  143 (237)
Q Consensus        68 ~~~~~~vLDlG~G---~G~~~~~la~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~  143 (237)
                      +++|.+||-+..|   .|..++.+++. |. +++++--++...+...+.++..|...   -+..-..+..+  +.+.+.+
T Consensus        26 ~~~g~~vli~~ga~g~vG~~aiqlAk~~Ga-~vI~~v~~~~~~~~~~~~~~~lGad~---vi~~~~~~~~~--~~~~v~~   99 (189)
T d1gu7a2          26 LTPGKDWFIQNGGTSAVGKYASQIGKLLNF-NSISVIRDRPNLDEVVASLKELGATQ---VITEDQNNSRE--FGPTIKE   99 (189)
T ss_dssp             CCTTTCEEEESCTTSHHHHHHHHHHHHHTC-EEEEEECCCTTHHHHHHHHHHHTCSE---EEEHHHHHCGG--GHHHHHH
T ss_pred             CCCCCEEEEEeCCCchHHHHHHHHHhhcCC-eEEEEEecccccchHHhhhhhccccE---EEeccccchhH--HHHHHHH
Confidence            5788888887333   35667777765 55 56666444445555555556666542   11111111110  0000000


Q ss_pred             cccccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEeccC
Q 026513          144 VVEDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGIL  197 (237)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~~~  197 (237)
                      ...          .....+|+|+-...-.    .+....+.|+++|+++..+..
T Consensus       100 ~~~----------~~g~~vdvv~D~vg~~----~~~~~~~~l~~~G~~v~~G~~  139 (189)
T d1gu7a2         100 WIK----------QSGGEAKLALNCVGGK----SSTGIARKLNNNGLMLTYGGM  139 (189)
T ss_dssp             HHH----------HHTCCEEEEEESSCHH----HHHHHHHTSCTTCEEEECCCC
T ss_pred             HHh----------hccCCceEEEECCCcc----hhhhhhhhhcCCcEEEEECCc
Confidence            000          0135789988544322    335567899999999987654

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.72  E-value=0.15  Score=39.41  Aligned_cols=87  Identities=15%  Similarity=0.123  Sum_probs=54.9

Q ss_pred             CCCeEEEEcCcchH---HHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccc
Q 026513           70 GGELFLDYGTGSGI---LGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVE  146 (237)
Q Consensus        70 ~~~~vLDlG~G~G~---~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  146 (237)
                      .|+.+|-.|+++|.   ++..+++.| .+|+.+|.+++.++.+.+.+....-.   .++.++..|+.+..   .+.++++
T Consensus         2 ~GKvalITGas~GIG~aia~~la~~G-a~V~i~~r~~~~~~~~~~~l~~~~~~---~~~~~~~~Dv~~~~---~v~~~~~   74 (254)
T d2gdza1           2 NGKVALVTGAAQGIGRAFAEALLLKG-AKVALVDWNLEAGVQCKAALHEQFEP---QKTLFIQCDVADQQ---QLRDTFR   74 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHTTTSCG---GGEEEEECCTTSHH---HHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHHhcCC---CcEEEEEeecCCHH---HHHHHHH
Confidence            47889999988773   344455665 46999999999888877666543211   14777888987532   1222222


Q ss_pred             ccccccccCCCCCCceeEEEEeCC
Q 026513          147 DLSSHKIRGISQTEKYDVVIANIL  170 (237)
Q Consensus       147 ~~~~~~~~~~~~~~~fD~I~~n~~  170 (237)
                      ...       ..-++.|+++.|..
T Consensus        75 ~~~-------~~~G~iDilVnnAg   91 (254)
T d2gdza1          75 KVV-------DHFGRLDILVNNAG   91 (254)
T ss_dssp             HHH-------HHHSCCCEEEECCC
T ss_pred             HHH-------HHcCCcCeeccccc
Confidence            210       01257999998775

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

Probab=93.71  E-value=0.13  Score=40.17  Aligned_cols=83  Identities=19%  Similarity=0.256  Sum_probs=52.2

Q ss_pred             CCCeEEEEcCcchH---HHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccc
Q 026513           70 GGELFLDYGTGSGI---LGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVE  146 (237)
Q Consensus        70 ~~~~vLDlG~G~G~---~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  146 (237)
                      .|+++|-.|+++|.   ++..+++.| .+|+.+|.++..++.+.+.+...+      .+.++..|+.+..   .+.++++
T Consensus         5 ~gKvalITGas~GIG~aia~~la~~G-a~V~i~~r~~~~~~~~~~~l~~~~------~~~~~~~Dv~~~~---~v~~~~~   74 (268)
T d2bgka1           5 QDKVAIITGGAGGIGETTAKLFVRYG-AKVVIADIADDHGQKVCNNIGSPD------VISFVHCDVTKDE---DVRNLVD   74 (268)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHCCTT------TEEEEECCTTCHH---HHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHhcCCC------ceEEEEccCCCHH---HHHHHHH
Confidence            47899999988873   344455665 459999999988887766654322      2667788886532   2222222


Q ss_pred             ccccccccCCCCCCceeEEEEeC
Q 026513          147 DLSSHKIRGISQTEKYDVVIANI  169 (237)
Q Consensus       147 ~~~~~~~~~~~~~~~fD~I~~n~  169 (237)
                      ...       ..-++.|+++.|.
T Consensus        75 ~~~-------~~~g~iD~lVnnA   90 (268)
T d2bgka1          75 TTI-------AKHGKLDIMFGNV   90 (268)
T ss_dssp             HHH-------HHHSCCCEEEECC
T ss_pred             HHH-------HHcCCcceecccc
Confidence            210       0125789999865

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=93.64  E-value=0.054  Score=39.69  Aligned_cols=95  Identities=15%  Similarity=0.084  Sum_probs=59.8

Q ss_pred             CCeEEEEcCcc-hHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccccc
Q 026513           71 GELFLDYGTGS-GILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDLS  149 (237)
Q Consensus        71 ~~~vLDlG~G~-G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~  149 (237)
                      ..+|+-+|+|. |..++..+..-..+|+++|.++..++..+.....+        +.....+-.          .     
T Consensus        32 pa~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~~~~l~~l~~~~~~~--------~~~~~~~~~----------~-----   88 (168)
T d1pjca1          32 PGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFGSR--------VELLYSNSA----------E-----   88 (168)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGGG--------SEEEECCHH----------H-----
T ss_pred             CcEEEEECCChHHHHHHHHHhhCCCEEEEEeCcHHHHHHHHHhhccc--------ceeehhhhh----------h-----
Confidence            46899999997 66677777654577999999999998877654322        222222110          0     


Q ss_pred             cccccCCCCCCceeEEEEeCChHHHH--H-HHHHHhHhcCCCeEEEE
Q 026513          150 SHKIRGISQTEKYDVVIANILLNPLL--Q-LADHIVSYAKPGAVVGI  193 (237)
Q Consensus       150 ~~~~~~~~~~~~fD~I~~n~~~~~~~--~-~l~~~~~~L~~gG~lii  193 (237)
                         +...  -...|+||.......-+  . +-+.+.+.+|||.+++=
T Consensus        89 ---l~~~--~~~aDivI~aalipG~~aP~lIt~~mv~~Mk~GSVIVD  130 (168)
T d1pjca1          89 ---IETA--VAEADLLIGAVLVPGRRAPILVPASLVEQMRTGSVIVD  130 (168)
T ss_dssp             ---HHHH--HHTCSEEEECCCCTTSSCCCCBCHHHHTTSCTTCEEEE
T ss_pred             ---HHHh--hccCcEEEEeeecCCcccCeeecHHHHhhcCCCcEEEE
Confidence               0000  23689999865432211  1 23667888999998873

>d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Escherichia coli [TaxId: 562]

Probab=93.53  E-value=0.21  Score=38.45  Aligned_cols=82  Identities=15%  Similarity=0.205  Sum_probs=50.9

Q ss_pred             CCCeEEEEcCcchH---HHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccc
Q 026513           70 GGELFLDYGTGSGI---LGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVE  146 (237)
Q Consensus        70 ~~~~vLDlG~G~G~---~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  146 (237)
                      +|+++|-.|.++|.   ++..+++.|. +|+.+|.+++.++...+.+..        +...+..|+.+..   .++++++
T Consensus         3 ~gK~alITGas~GIG~a~a~~l~~~G~-~Vv~~~r~~~~l~~~~~~~~~--------~~~~~~~Dv~~~~---~v~~~~~   70 (243)
T d1q7ba_           3 EGKIALVTGASRGIGRAIAETLAARGA-KVIGTATSENGAQAISDYLGA--------NGKGLMLNVTDPA---SIESVLE   70 (243)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHGG--------GEEEEECCTTCHH---HHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHhCC--------CCcEEEEEecCHH---Hhhhhhh
Confidence            47888988988773   4445556654 699999999888776655432        2556677876432   1222222


Q ss_pred             ccccccccCCCCCCceeEEEEeCC
Q 026513          147 DLSSHKIRGISQTEKYDVVIANIL  170 (237)
Q Consensus       147 ~~~~~~~~~~~~~~~fD~I~~n~~  170 (237)
                      ..       ...-++.|+++.|..
T Consensus        71 ~~-------~~~~g~iDilVnnAg   87 (243)
T d1q7ba_          71 KI-------RAEFGEVDILVNNAG   87 (243)
T ss_dssp             HH-------HHHTCSCSEEEECCC
T ss_pred             hh-------hcccCCcceehhhhh
Confidence            21       001258999998764

>d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 11-beta-hydroxysteroid dehydrogenase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.51  E-value=0.19  Score=39.12  Aligned_cols=59  Identities=14%  Similarity=0.155  Sum_probs=42.4

Q ss_pred             CCCeEEEEcCcch---HHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccc
Q 026513           70 GGELFLDYGTGSG---ILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTF  133 (237)
Q Consensus        70 ~~~~vLDlG~G~G---~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~  133 (237)
                      +|+++|-.|+++|   .++..+++.| .+|+.++.+++.++.+.+........    .+.+...|..
T Consensus        13 ~GK~alITGassGIG~aiA~~la~~G-~~Vil~~r~~~~l~~~~~~~~~~~~~----~~~~~~~d~~   74 (269)
T d1xu9a_          13 QGKKVIVTGASKGIGREMAYHLAKMG-AHVVVTARSKETLQKVVSHCLELGAA----SAHYIAGTME   74 (269)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHHTCS----EEEEEECCTT
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHhhhhcc----cchhhhhhhh
Confidence            5889999999988   3455566776 56999999999998877665544333    2555666654

>d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3beta/17beta hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=93.49  E-value=0.15  Score=39.48  Aligned_cols=82  Identities=17%  Similarity=0.106  Sum_probs=50.5

Q ss_pred             CCCeEEEEcCcch---HHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccc
Q 026513           70 GGELFLDYGTGSG---ILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVE  146 (237)
Q Consensus        70 ~~~~vLDlG~G~G---~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  146 (237)
                      +|+++|-.|+++|   .++..+++.|. +|+.+|.+++.++.+.+.+   +-     +..++..|+.+..-   ++++++
T Consensus         5 ~gK~alITGas~GIG~aia~~la~~Ga-~V~~~~~~~~~~~~~~~~~---~~-----~~~~~~~Dv~~~~~---~~~~~~   72 (253)
T d1hxha_           5 QGKVALVTGGASGVGLEVVKLLLGEGA-KVAFSDINEAAGQQLAAEL---GE-----RSMFVRHDVSSEAD---WTLVMA   72 (253)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHHH---CT-----TEEEECCCTTCHHH---HHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHh---CC-----CeEEEEeecCCHHH---HHHHHH
Confidence            4788998898777   23445556665 5999999998887665544   21     25667788764321   222222


Q ss_pred             ccccccccCCCCCCceeEEEEeCC
Q 026513          147 DLSSHKIRGISQTEKYDVVIANIL  170 (237)
Q Consensus       147 ~~~~~~~~~~~~~~~fD~I~~n~~  170 (237)
                      ...       ..-++.|+++.|..
T Consensus        73 ~~~-------~~~g~iDilVnnAG   89 (253)
T d1hxha_          73 AVQ-------RRLGTLNVLVNNAG   89 (253)
T ss_dssp             HHH-------HHHCSCCEEEECCC
T ss_pred             HHH-------HHhCCCCeEEeccc
Confidence            210       01257899998774

>d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative zinc-binding alcohol dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.26  E-value=0.075  Score=39.28  Aligned_cols=101  Identities=15%  Similarity=0.162  Sum_probs=59.8

Q ss_pred             ccCC--CeEEEEcC--cchHHHHHHHH-hCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccc
Q 026513           68 IKGG--ELFLDYGT--GSGILGIAAIK-FGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVD  142 (237)
Q Consensus        68 ~~~~--~~vLDlG~--G~G~~~~~la~-~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~  142 (237)
                      +++|  ++||-.|.  |.|.+++.+++ .|...|+++..+++......+   ..+...   -+.....+..         
T Consensus        26 ~~~G~~etVLI~gaaGgVG~~aiQlak~~Ga~~vi~~~~~~e~~~~l~~---~~gad~---vi~~~~~~~~---------   90 (187)
T d1vj1a2          26 ISAGSNQTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTQEKCLFLTS---ELGFDA---AVNYKTGNVA---------   90 (187)
T ss_dssp             CCTTSCCEEEESSTTSTTGGGHHHHHHHTTCSEEEEEESSHHHHHHHHH---HSCCSE---EEETTSSCHH---------
T ss_pred             CCCCCCCEEEEECCCchhhHHHHHHHHHcCCcceecccchHHHHhhhhh---cccceE---EeeccchhHH---------
Confidence            4555  77998773  45889999997 477788888887755443322   223221   1221111211         


Q ss_pred             ccccccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEecc
Q 026513          143 GVVEDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGI  196 (237)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~~  196 (237)
                         +     .+.... ...+|+|+-...-    +.+....+.|+++|+++..+.
T Consensus        91 ---~-----~~~~~~-~~GvDvv~D~vGg----~~~~~~~~~l~~~G~iv~~G~  131 (187)
T d1vj1a2          91 ---E-----QLREAC-PGGVDVYFDNVGG----DISNTVISQMNENSHIILCGQ  131 (187)
T ss_dssp             ---H-----HHHHHC-TTCEEEEEESSCH----HHHHHHHTTEEEEEEEEEC--
T ss_pred             ---H-----HHHHHh-ccCceEEEecCCc----hhHHHHhhhccccccEEEecc
Confidence               0     011122 3579999865532    356778889999999998553

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=93.21  E-value=0.27  Score=34.65  Aligned_cols=96  Identities=9%  Similarity=0.013  Sum_probs=57.1

Q ss_pred             eEEEEcCcchHHHHHH----HHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccccc
Q 026513           73 LFLDYGTGSGILGIAA----IKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDL  148 (237)
Q Consensus        73 ~vLDlG~G~G~~~~~l----a~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~  148 (237)
                      +++-+|+|.  ++..+    ... ...++.+|.+++......+.....+       +.++.||..++.+-          
T Consensus         5 HiII~G~g~--~g~~l~~~L~~~-~~~v~vId~d~~~~~~~~~~~~~~~-------~~vi~Gd~~d~~~L----------   64 (153)
T d1id1a_           5 HFIVCGHSI--LAINTILQLNQR-GQNVTVISNLPEDDIKQLEQRLGDN-------ADVIPGDSNDSSVL----------   64 (153)
T ss_dssp             CEEEECCSH--HHHHHHHHHHHT-TCCEEEEECCCHHHHHHHHHHHCTT-------CEEEESCTTSHHHH----------
T ss_pred             EEEEECCCH--HHHHHHHHHHHc-CCCEEEEeccchhHHHHHHHhhcCC-------cEEEEccCcchHHH----------
Confidence            577777764  33333    334 4568999999876544444444333       66788998753211          


Q ss_pred             ccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEe
Q 026513          149 SSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGIS  194 (237)
Q Consensus       149 ~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis  194 (237)
                           ... .-.+.|.+++...-+...-.+....+.+.|...++..
T Consensus        65 -----~~a-~i~~a~~vi~~~~~d~~n~~~~~~~r~~~~~~~iia~  104 (153)
T d1id1a_          65 -----KKA-GIDRCRAILALSDNDADNAFVVLSAKDMSSDVKTVLA  104 (153)
T ss_dssp             -----HHH-TTTTCSEEEECSSCHHHHHHHHHHHHHHTSSSCEEEE
T ss_pred             -----HHh-ccccCCEEEEccccHHHHHHHHHHHHHhCCCCceEEE
Confidence                 111 1347899998665544444445556667788777764

>d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.RsrI N6 adenosine-specific DNA methyltransferase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=93.15  E-value=0.032  Score=43.58  Aligned_cols=38  Identities=11%  Similarity=0.118  Sum_probs=31.7

Q ss_pred             CCCceeEEEEeCCh--------------HHHHHHHHHHhHhcCCCeEEEEec
Q 026513          158 QTEKYDVVIANILL--------------NPLLQLADHIVSYAKPGAVVGISG  195 (237)
Q Consensus       158 ~~~~fD~I~~n~~~--------------~~~~~~l~~~~~~L~~gG~liis~  195 (237)
                      +++++|+|+.+||+              ..+...+..+.++|+|+|.+++.+
T Consensus        20 ~d~SIDliitDPPYn~~~~~~~~~~~y~~~~~~~~~e~~rvLk~~G~~~~~~   71 (279)
T d1eg2a_          20 PDDSVQLIICDPPYNIMLADWDDHMDYIGWAKRWLAEAERVLSPTGSIAIFG   71 (279)
T ss_dssp             CTTCEEEEEECCCSBCCGGGGGTCSSHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             cCCCccEEEECCCCCCCcccccCHHHHHHHHHHHHHHHHHHhCCCccEEEec
Confidence            46899999999994              334677889999999999999853

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.09  E-value=0.29  Score=37.60  Aligned_cols=78  Identities=18%  Similarity=0.099  Sum_probs=50.8

Q ss_pred             cCCCeEEEEcCcch---HHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccc
Q 026513           69 KGGELFLDYGTGSG---ILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVV  145 (237)
Q Consensus        69 ~~~~~vLDlG~G~G---~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  145 (237)
                      -.|+++|-.|+++|   .++..+++.|. +|+.+|.++..++.+.+.+     ..    +..++.|+.+.   +.+++++
T Consensus         5 L~GK~~lITGas~GIG~aia~~la~~G~-~V~~~~r~~~~l~~~~~~~-----~~----~~~~~~Dv~d~---~~v~~~~   71 (244)
T d1pr9a_           5 LAGRRVLVTGAGKGIGRGTVQALHATGA-RVVAVSRTQADLDSLVREC-----PG----IEPVCVDLGDW---EATERAL   71 (244)
T ss_dssp             CTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHS-----TT----CEEEECCTTCH---HHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEECCHHHHHHHHHhc-----CC----CeEEEEeCCCH---HHHHHHH
Confidence            36899999998887   34455666765 5999999998876654432     11    45567787643   2233333


Q ss_pred             cccccccccCCCCCCceeEEEEeCC
Q 026513          146 EDLSSHKIRGISQTEKYDVVIANIL  170 (237)
Q Consensus       146 ~~~~~~~~~~~~~~~~fD~I~~n~~  170 (237)
                      +.           -++.|+++.|..
T Consensus        72 ~~-----------~g~iDilVnnAg   85 (244)
T d1pr9a_          72 GS-----------VGPVDLLVNNAA   85 (244)
T ss_dssp             TT-----------CCCCCEEEECCC
T ss_pred             HH-----------hCCceEEEeccc
Confidence            22           257999998764

>d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative oxidoreductase Rv2002
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=93.05  E-value=0.22  Score=38.38  Aligned_cols=82  Identities=20%  Similarity=0.103  Sum_probs=51.9

Q ss_pred             CCCeEEEEcCcchH---HHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccc
Q 026513           70 GGELFLDYGTGSGI---LGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVE  146 (237)
Q Consensus        70 ~~~~vLDlG~G~G~---~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  146 (237)
                      .|+++|-.|++.|.   ++..+++.|. +|+.+|.+++.++.+.+.+..        ++.++++|+.+..   .+.++++
T Consensus         5 ~gK~alITGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~--------~~~~~~~Dv~~~~---~v~~~~~   72 (244)
T d1nffa_           5 TGKVALVSGGARGMGASHVRAMVAEGA-KVVFGDILDEEGKAMAAELAD--------AARYVHLDVTQPA---QWKAAVD   72 (244)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHTGG--------GEEEEECCTTCHH---HHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhhC--------cceEEEeecCCHH---HHHHHHH
Confidence            47899999988873   4445666665 599999999887766555421        2667788886532   1222222


Q ss_pred             ccccccccCCCCCCceeEEEEeCC
Q 026513          147 DLSSHKIRGISQTEKYDVVIANIL  170 (237)
Q Consensus       147 ~~~~~~~~~~~~~~~fD~I~~n~~  170 (237)
                      ...       ..-++.|+++.|..
T Consensus        73 ~~~-------~~~g~idilinnAG   89 (244)
T d1nffa_          73 TAV-------TAFGGLHVLVNNAG   89 (244)
T ss_dssp             HHH-------HHHSCCCEEEECCC
T ss_pred             HHH-------HHhCCCeEEEECCc
Confidence            210       01257899998764

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=93.03  E-value=0.076  Score=41.38  Aligned_cols=85  Identities=20%  Similarity=0.202  Sum_probs=55.0

Q ss_pred             CCCeEEEEcCcchH---HHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccc
Q 026513           70 GGELFLDYGTGSGI---LGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVE  146 (237)
Q Consensus        70 ~~~~vLDlG~G~G~---~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  146 (237)
                      .|+++|-.|.+.|.   ++..+++.| .+|+.+|.+++.++.+.+.++..+..     +.++.+|+.+..-   +.++++
T Consensus        10 ~gK~alITGas~GIG~aia~~la~~G-a~V~~~~r~~~~~~~~~~~l~~~g~~-----~~~~~~Dvs~~~~---~~~~~~   80 (255)
T d1fmca_          10 DGKCAIITGAGAGIGKEIAITFATAG-ASVVVSDINADAANHVVDEIQQLGGQ-----AFACRCDITSEQE---LSALAD   80 (255)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHTTT-CEEEEEESCHHHHHHHHHHHHHTTCC-----EEEEECCTTCHHH---HHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHHcCCc-----EEEEEccCCCHHH---HHHHHH
Confidence            58889988877763   334455555 45999999999999888888776533     6777889875321   222221


Q ss_pred             ccccccccCCCCCCceeEEEEeCC
Q 026513          147 DLSSHKIRGISQTEKYDVVIANIL  170 (237)
Q Consensus       147 ~~~~~~~~~~~~~~~fD~I~~n~~  170 (237)
                      ..       ...-++.|+++.|..
T Consensus        81 ~~-------~~~~g~iDilvnnAG   97 (255)
T d1fmca_          81 FA-------ISKLGKVDILVNNAG   97 (255)
T ss_dssp             HH-------HHHHSSCCEEEECCC
T ss_pred             HH-------HHHcCCCCEeeeCCc
Confidence            11       000257899998763

>d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Bacterial sepiapterin reductase
species: Chlorobium tepidum [TaxId: 1097]

Probab=93.00  E-value=0.38  Score=36.78  Aligned_cols=82  Identities=11%  Similarity=0.141  Sum_probs=53.1

Q ss_pred             EEEEcCcchH---HHHHHHHhCCC------eEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccc
Q 026513           74 FLDYGTGSGI---LGIAAIKFGAA------MSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGV  144 (237)
Q Consensus        74 vLDlG~G~G~---~~~~la~~~~~------~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~  144 (237)
                      ||-.|+++|.   ++..+++.|..      .++.++.+++.++...+.+...+.     ++.++.+|+.+..   .++++
T Consensus         4 vlITGas~GIG~aia~~la~~G~~~~~~~~~v~~~~r~~~~l~~~~~~~~~~g~-----~~~~~~~Dvt~~~---~v~~~   75 (240)
T d2bd0a1           4 LLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECRAEGA-----LTDTITADISDMA---DVRRL   75 (240)
T ss_dssp             EEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHHHHHHHHHTTTC-----EEEEEECCTTSHH---HHHHH
T ss_pred             EEEccCCCHHHHHHHHHHHHhCccccccCcEEEEEeCCHHHHHHHHHHHHhcCC-----cEEEEEecCCCHH---HHHHH
Confidence            5677887773   44556666654      488999999999888877776553     3777888887532   22222


Q ss_pred             ccccccccccCCCCCCceeEEEEeCC
Q 026513          145 VEDLSSHKIRGISQTEKYDVVIANIL  170 (237)
Q Consensus       145 ~~~~~~~~~~~~~~~~~fD~I~~n~~  170 (237)
                      ++...       ..-+..|+++.|..
T Consensus        76 ~~~~~-------~~~g~iDilvnnAg   94 (240)
T d2bd0a1          76 TTHIV-------ERYGHIDCLVNNAG   94 (240)
T ss_dssp             HHHHH-------HHTSCCSEEEECCC
T ss_pred             HHHHH-------HHcCCcceeecccc
Confidence            22210       01257999998764

>d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: D(-)-3-hydroxybutyrate dehydrogenase
species: Pseudomonas fragi [TaxId: 296]

Probab=92.78  E-value=0.17  Score=39.25  Aligned_cols=86  Identities=21%  Similarity=0.225  Sum_probs=52.7

Q ss_pred             CCCeEEEEcCcchH---HHHHHHHhCCCeEEEEeCC-HHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccc
Q 026513           70 GGELFLDYGTGSGI---LGIAAIKFGAAMSVGADID-PQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVV  145 (237)
Q Consensus        70 ~~~~vLDlG~G~G~---~~~~la~~~~~~v~~vD~s-~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  145 (237)
                      +|+++|-.|+++|.   ++..+++.|. +|+.+|.+ +..++.+.+.+....-.    ++.++..|+.+..   .+.+++
T Consensus         3 ~gK~alITGas~GIG~aiA~~la~~Ga-~V~~~~r~~~~~~~~~~~~~~~~~g~----~~~~~~~Dv~~~~---~v~~~~   74 (260)
T d1x1ta1           3 KGKVAVVTGSTSGIGLGIATALAAQGA-DIVLNGFGDAAEIEKVRAGLAAQHGV----KVLYDGADLSKGE---AVRGLV   74 (260)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEECCSCHHHHHHHHHHHHHHHTS----CEEEECCCTTSHH---HHHHHH
T ss_pred             CcCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCcHHHHHHHHHHHHHhcCC----cEEEEECCCCCHH---HHHHHH
Confidence            57888988888873   4445666765 69999986 56666666655433222    3778899987532   122222


Q ss_pred             cccccccccCCCCCCceeEEEEeCC
Q 026513          146 EDLSSHKIRGISQTEKYDVVIANIL  170 (237)
Q Consensus       146 ~~~~~~~~~~~~~~~~fD~I~~n~~  170 (237)
                      +..       ...-++.|++|.|..
T Consensus        75 ~~~-------~~~~G~iDiLVnnAG   92 (260)
T d1x1ta1          75 DNA-------VRQMGRIDILVNNAG   92 (260)
T ss_dssp             HHH-------HHHHSCCSEEEECCC
T ss_pred             HHH-------HHHhCCCcEEEeecc
Confidence            221       000257999998764

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=92.77  E-value=0.52  Score=36.23  Aligned_cols=82  Identities=21%  Similarity=0.188  Sum_probs=53.0

Q ss_pred             eEEEEcCcchH---HHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccccc
Q 026513           73 LFLDYGTGSGI---LGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDLS  149 (237)
Q Consensus        73 ~vLDlG~G~G~---~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~  149 (237)
                      .+|-.|++.|.   ++..+++.|. +|+.+|.+++.++.+.+.+...+..     +.++.+|+.+..   .+.++++...
T Consensus         3 ValITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~i~~~g~~-----~~~~~~Dv~~~~---~v~~~~~~~~   73 (255)
T d1gega_           3 VALVTGAGQGIGKAIALRLVKDGF-AVAIADYNDATAKAVASEINQAGGH-----AVAVKVDVSDRD---QVFAAVEQAR   73 (255)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCC-----EEEEECCTTSHH---HHHHHHHHHH
T ss_pred             EEEEcCCccHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCc-----EEEEEeeCCCHH---HHHHHHHHHH
Confidence            35777877662   3445566665 6999999999999888888766543     777788987532   2222222210


Q ss_pred             cccccCCCCCCceeEEEEeCC
Q 026513          150 SHKIRGISQTEKYDVVIANIL  170 (237)
Q Consensus       150 ~~~~~~~~~~~~fD~I~~n~~  170 (237)
                             ..-++.|++|.|..
T Consensus        74 -------~~~g~iDilVnnAG   87 (255)
T d1gega_          74 -------KTLGGFDVIVNNAG   87 (255)
T ss_dssp             -------HHTTCCCEEEECCC
T ss_pred             -------HHhCCccEEEeccc
Confidence                   01257999998763

>d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Peroxisomal trans 2-enoyl CoA reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.71  E-value=0.14  Score=40.84  Aligned_cols=90  Identities=18%  Similarity=0.184  Sum_probs=56.8

Q ss_pred             CCCeEEEEcCcchH---HHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccc
Q 026513           70 GGELFLDYGTGSGI---LGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVE  146 (237)
Q Consensus        70 ~~~~vLDlG~G~G~---~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  146 (237)
                      .|+++|-.|+++|.   ++..+++.|+ +|+.+|.+++.++.+.+.+..........++.++.+|+.+..-   +.++++
T Consensus        11 ~gKvalITGas~GIG~aia~~la~~Ga-~Vvi~~r~~~~l~~~~~el~~~~~~~~~~~~~~~~~Dvs~~~~---v~~~~~   86 (297)
T d1yxma1          11 QGQVAIVTGGATGIGKAIVKELLELGS-NVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRNEEE---VNNLVK   86 (297)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTCHHH---HHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhhhccccCceEEEEeccCCCHHH---HHHHHH
Confidence            57899999988873   3445556665 6999999999988877766654322222257788899875321   222222


Q ss_pred             ccccccccCCCCCCceeEEEEeCC
Q 026513          147 DLSSHKIRGISQTEKYDVVIANIL  170 (237)
Q Consensus       147 ~~~~~~~~~~~~~~~fD~I~~n~~  170 (237)
                      ..       ...-++.|++|.|..
T Consensus        87 ~~-------~~~~G~iDiLVnnAg  103 (297)
T d1yxma1          87 ST-------LDTFGKINFLVNNGG  103 (297)
T ss_dssp             HH-------HHHHSCCCEEEECCC
T ss_pred             HH-------HHHhCCeEEEEeecc
Confidence            21       001257899998764

>d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.PvuII N4 cytosine-specific DNA methyltransferase
species: Proteus vulgaris [TaxId: 585]

Probab=92.44  E-value=0.057  Score=42.79  Aligned_cols=38  Identities=16%  Similarity=0.169  Sum_probs=31.6

Q ss_pred             CCCceeEEEEeCCh-----------------HHHHHHHHHHhHhcCCCeEEEEec
Q 026513          158 QTEKYDVVIANILL-----------------NPLLQLADHIVSYAKPGAVVGISG  195 (237)
Q Consensus       158 ~~~~fD~I~~n~~~-----------------~~~~~~l~~~~~~L~~gG~liis~  195 (237)
                      +++++|+|+.+||+                 ..+.+.+..+.++|+|+|.+++.+
T Consensus        28 ~~~sVdli~tDPPY~~~~~~~~~~~~~~~y~~~~~~~l~~~~rvLk~~G~i~i~~   82 (320)
T d1booa_          28 PEESISLVMTSPPFALQRKKEYGNLEQHEYVDWFLSFAKVVNKKLKPDGSFVVDF   82 (320)
T ss_dssp             CSSCEEEEEECCCCSSSCSCSSCSCHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ccCCCCEEEECCCCcCCCCCCCCCCCHHHHHHHHHHHHHHHHHhCcccCcccccc
Confidence            46799999999994                 234567899999999999999863

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

Probab=92.37  E-value=0.24  Score=38.41  Aligned_cols=85  Identities=13%  Similarity=0.045  Sum_probs=52.9

Q ss_pred             CCCeEEEEcCcchH---HHHHHHHhCCCeEEEEeCCHHHHHHHHHHH-HHcCCCCCcceEEeccCccccccccccccccc
Q 026513           70 GGELFLDYGTGSGI---LGIAAIKFGAAMSVGADIDPQAIKSAHQNA-ALNNIGPKKMKLHLVPDRTFTASMNERVDGVV  145 (237)
Q Consensus        70 ~~~~vLDlG~G~G~---~~~~la~~~~~~v~~vD~s~~~i~~a~~~~-~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  145 (237)
                      .|+++|-.|.+.|.   ++..+++.|. +|+.+|.++..++.+.+.+ ...+.     ++.++.+|+.+..   .+.+++
T Consensus         8 ~gK~alITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~~~~~~~~~~~~~g~-----~~~~~~~Dv~~~~---~v~~~~   78 (260)
T d1h5qa_           8 VNKTIIVTGGNRGIGLAFTRAVAAAGA-NVAVIYRSAADAVEVTEKVGKEFGV-----KTKAYQCDVSNTD---IVTKTI   78 (260)
T ss_dssp             TTEEEEEETTTSHHHHHHHHHHHHTTE-EEEEEESSCTTHHHHHHHHHHHHTC-----CEEEEECCTTCHH---HHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHHhCC-----ceEEEEccCCCHH---HHHHHH
Confidence            47899999987763   4445566665 6999999987776655544 33343     2777888887532   222232


Q ss_pred             cccccccccCCCCCCceeEEEEeCC
Q 026513          146 EDLSSHKIRGISQTEKYDVVIANIL  170 (237)
Q Consensus       146 ~~~~~~~~~~~~~~~~fD~I~~n~~  170 (237)
                      +...       ..-++.|+++.|..
T Consensus        79 ~~~~-------~~~g~iDilVnnAg   96 (260)
T d1h5qa_          79 QQID-------ADLGPISGLIANAG   96 (260)
T ss_dssp             HHHH-------HHSCSEEEEEECCC
T ss_pred             HHHH-------HHhCCCcEeccccc
Confidence            2210       11368999998764

>d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: Methyltransferase mboII
species: Moraxella bovis [TaxId: 476]

Probab=91.97  E-value=0.039  Score=42.47  Aligned_cols=38  Identities=5%  Similarity=0.052  Sum_probs=30.9

Q ss_pred             CCCceeEEEEeCCh-----------------HHHHHHHHHHhHhcCCCeEEEEec
Q 026513          158 QTEKYDVVIANILL-----------------NPLLQLADHIVSYAKPGAVVGISG  195 (237)
Q Consensus       158 ~~~~fD~I~~n~~~-----------------~~~~~~l~~~~~~L~~gG~liis~  195 (237)
                      +++++|+|+.+||+                 ..+.+.+..+.+.|+|+|.+++.+
T Consensus        20 pd~sVdliitdPPY~~~~~~~d~~~~~~~y~~~~~~~~~e~~rvLk~~g~~~~~~   74 (256)
T d1g60a_          20 ENKSVQLAVIDPPYNLSKADWDSFDSHNEFLAFTYRWIDKVLDKLDKDGSLYIFN   74 (256)
T ss_dssp             CTTCEEEEEECCCCSSCSSGGGCCSSHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             cCCCcCEEEECCCCCCCcCcCcCCCCHHHHHHHHHHHHHHhhhccccCccccccc
Confidence            46799999999994                 234567889999999999998754

>d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.95  E-value=0.48  Score=36.22  Aligned_cols=77  Identities=18%  Similarity=0.094  Sum_probs=48.7

Q ss_pred             CCCeEEEEcCcchH---HHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccc
Q 026513           70 GGELFLDYGTGSGI---LGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVE  146 (237)
Q Consensus        70 ~~~~vLDlG~G~G~---~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  146 (237)
                      .|+++|-.|++.|.   ++..+++.| .+|+.+|.+++.++.+.+.+     ..    +..+..|+.+..   .++++++
T Consensus         4 ~GK~alITGas~GIG~aia~~la~~G-a~V~~~~r~~~~l~~~~~~~-----~~----~~~~~~Dv~~~~---~v~~~~~   70 (242)
T d1cyda_           4 SGLRALVTGAGKGIGRDTVKALHASG-AKVVAVTRTNSDLVSLAKEC-----PG----IEPVCVDLGDWD---ATEKALG   70 (242)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHS-----TT----CEEEECCTTCHH---HHHHHHT
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHhc-----CC----CeEEEEeCCCHH---HHHHHHH
Confidence            48899999988773   344555665 45999999987766554332     11    455677876432   2333332


Q ss_pred             ccccccccCCCCCCceeEEEEeCC
Q 026513          147 DLSSHKIRGISQTEKYDVVIANIL  170 (237)
Q Consensus       147 ~~~~~~~~~~~~~~~fD~I~~n~~  170 (237)
                      .           -++.|+++.|..
T Consensus        71 ~-----------~g~iDilVnnAg   83 (242)
T d1cyda_          71 G-----------IGPVDLLVNNAA   83 (242)
T ss_dssp             T-----------CCCCSEEEECCC
T ss_pred             H-----------cCCCeEEEECCc
Confidence            2           267999998753

>d2uyoa1 c.66.1.57 (A:14-310) Putative methyltransferase ML2640 {Mycobacterium leprae [TaxId: 1769]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: ML2640-like
domain: Putative methyltransferase ML2640
species: Mycobacterium leprae [TaxId: 1769]

Probab=91.92  E-value=1.6  Score=34.43  Aligned_cols=111  Identities=14%  Similarity=0.033  Sum_probs=68.3

Q ss_pred             CeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccccccc
Q 026513           72 ELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDLSSH  151 (237)
Q Consensus        72 ~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~  151 (237)
                      ..|+.+|||-=+....+...+..+++=+|. |.+++.-++.+...+.... -+...+..|+.+.        +.+.+   
T Consensus        91 ~qvV~LGaGlDTr~~Rl~~~~~~~~~EvD~-p~vi~~K~~~l~~~~~~~~-~~~~~v~~Dl~~~--------~~~~L---  157 (297)
T d2uyoa1          91 RQFVILASGLDSRAYRLDWPTGTTVYEIDQ-PKVLAYKSTTLAEHGVTPT-ADRREVPIDLRQD--------WPPAL---  157 (297)
T ss_dssp             CEEEEETCTTCCHHHHSCCCTTCEEEEEEC-HHHHHHHHHHHHHTTCCCS-SEEEEEECCTTSC--------HHHHH---
T ss_pred             CeEEEeCcccCChhhhcCCCcCceEEEcCC-hHHHHHHHHHHHhcCCCCC-ceEEEecccccch--------HHHHH---
Confidence            567889999887766653334455667773 7788877777777655421 2356666666431        11111   


Q ss_pred             cccCCCCCCceeEEEEeCCh-----HHHHHHHHHHhHhcCCCeEEEEecc
Q 026513          152 KIRGISQTEKYDVVIANILL-----NPLLQLADHIVSYAKPGAVVGISGI  196 (237)
Q Consensus       152 ~~~~~~~~~~fD~I~~n~~~-----~~~~~~l~~~~~~L~~gG~liis~~  196 (237)
                       ..........=++++-..+     ....++++.+.....||+.+++...
T Consensus       158 -~~~g~d~~~ptl~i~EGvl~YL~~~~~~~ll~~i~~~~~~GS~l~~d~~  206 (297)
T d2uyoa1         158 -RSAGFDPSARTAWLAEGLLMYLPATAQDGLFTEIGGLSAVGSRIAVETS  206 (297)
T ss_dssp             -HHTTCCTTSCEEEEECSCGGGSCHHHHHHHHHHHHHTCCTTCEEEEECC
T ss_pred             -HhcCCCCCCCEEEEEccccccCCHHHHHHHHHHHHHhCCCCCEEEEEec
Confidence             1111122345566665554     3446789999999999999998643

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=91.85  E-value=0.14  Score=36.96  Aligned_cols=46  Identities=20%  Similarity=0.312  Sum_probs=35.7

Q ss_pred             hccCCCeEEEEcCcchHHH-HHHH-HhCCCeEEEEeCCHHHHHHHHHH
Q 026513           67 LIKGGELFLDYGTGSGILG-IAAI-KFGAAMSVGADIDPQAIKSAHQN  112 (237)
Q Consensus        67 ~~~~~~~vLDlG~G~G~~~-~~la-~~~~~~v~~vD~s~~~i~~a~~~  112 (237)
                      .+++|.+|+-+|+|.+... ..++ ..+..+|+++|.+++-++.+++.
T Consensus        25 ~~k~g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl~~a~~~   72 (175)
T d1cdoa2          25 KVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVF   72 (175)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHT
T ss_pred             CCCCCCEEEEEecCCccchHHHHHHHHhhchheeecchHHHHHHHHHc
Confidence            3688999999999985443 3333 46888999999999988877653

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=91.76  E-value=0.41  Score=32.63  Aligned_cols=91  Identities=9%  Similarity=-0.042  Sum_probs=57.5

Q ss_pred             CcchHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccccccccccCCC
Q 026513           79 TGSGILGIAAIKF-GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDLSSHKIRGIS  157 (237)
Q Consensus        79 ~G~G~~~~~la~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (237)
                      ||.|.++..+++. ....++.+|.++...+.++.    .+       +.++.||..++.+               +... 
T Consensus         6 ~G~g~~g~~l~~~L~~~~i~vi~~d~~~~~~~~~----~~-------~~~i~Gd~~~~~~---------------L~~a-   58 (129)
T d2fy8a1           6 CGWSESTLECLRELRGSEVFVLAEDENVRKKVLR----SG-------ANFVHGDPTRVSD---------------LEKA-   58 (129)
T ss_dssp             ESCCHHHHHHHHTSCGGGEEEEESCTTHHHHHHH----TT-------CEEEESCTTSHHH---------------HHHT-
T ss_pred             ECCCHHHHHHHHHHcCCCCEEEEcchHHHHHHHh----cC-------ccccccccCCHHH---------------HHHh-
Confidence            4567777777753 34458899999998775542    23       5577888764321               1111 


Q ss_pred             CCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEecc
Q 026513          158 QTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGI  196 (237)
Q Consensus       158 ~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~~  196 (237)
                      .-.+++.+++..+-+...-.+....+.+.|...++....
T Consensus        59 ~i~~A~~vi~~~~~d~~n~~~~~~~r~~~~~~~iia~~~   97 (129)
T d2fy8a1          59 NVRGARAVIVNLESDSETIHCILGIRKIDESVRIIAEAE   97 (129)
T ss_dssp             TCTTCSEEEECCSSHHHHHHHHHHHHHHCSSSCEEEECS
T ss_pred             hhhcCcEEEEeccchhhhHHHHHHHHHHCCCceEEEEEc
Confidence            135788888877655444445556667788888777543

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=91.71  E-value=0.64  Score=36.26  Aligned_cols=86  Identities=21%  Similarity=0.245  Sum_probs=52.9

Q ss_pred             CCCeEEEEcCcch---HHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccc
Q 026513           70 GGELFLDYGTGSG---ILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVE  146 (237)
Q Consensus        70 ~~~~vLDlG~G~G---~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  146 (237)
                      +|+++|-.|++.|   .++..+++.| .+|+.+|.+...++.+.+.+......    ++.++..|+.+..   .+..+++
T Consensus        24 ~gK~alITGas~GIG~aiA~~la~~G-a~Vii~~r~~~~l~~~~~~l~~~~g~----~~~~~~~D~~~~~---~v~~~~~   95 (294)
T d1w6ua_          24 QGKVAFITGGGTGLGKGMTTLLSSLG-AQCVIASRKMDVLKATAEQISSQTGN----KVHAIQCDVRDPD---MVQNTVS   95 (294)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHHHSS----CEEEEECCTTCHH---HHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcC-CEEEEEECCHHHHHHHHHHHHHhcCC----ceEEEEecccChH---HHHHHhh
Confidence            4789999998877   3444555665 56999999999887766655433222    2667778876422   1121111


Q ss_pred             ccccccccCCCCCCceeEEEEeCC
Q 026513          147 DLSSHKIRGISQTEKYDVVIANIL  170 (237)
Q Consensus       147 ~~~~~~~~~~~~~~~fD~I~~n~~  170 (237)
                      ..       ....+..|+++.|..
T Consensus        96 ~~-------~~~~g~iDilvnnAg  112 (294)
T d1w6ua_          96 EL-------IKVAGHPNIVINNAA  112 (294)
T ss_dssp             HH-------HHHTCSCSEEEECCC
T ss_pred             hh-------hhhccccchhhhhhh
Confidence            11       111367899998764

>d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase
species: Streptomyces hydrogenans [TaxId: 1905]

Probab=91.48  E-value=0.39  Score=37.12  Aligned_cols=82  Identities=16%  Similarity=0.052  Sum_probs=51.0

Q ss_pred             CCCeEEEEcCcch---HHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccc
Q 026513           70 GGELFLDYGTGSG---ILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVE  146 (237)
Q Consensus        70 ~~~~vLDlG~G~G---~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  146 (237)
                      +|+++|-.|.+.|   .++..+++.|+ +|+.+|.+++.++...+.+   +  .   ++.++..|+.+..   .++++++
T Consensus         4 ~gK~alVTGas~GIG~aia~~la~~Ga-~V~~~~r~~~~~~~~~~~~---~--~---~~~~~~~Dv~~~~---~v~~~~~   71 (254)
T d1hdca_           4 SGKTVIITGGARGLGAEAARQAVAAGA-RVVLADVLDEEGAATAREL---G--D---AARYQHLDVTIEE---DWQRVVA   71 (254)
T ss_dssp             CCSEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHTT---G--G---GEEEEECCTTCHH---HHHHHHH
T ss_pred             CCCEEEEeCcCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHh---C--C---ceEEEEcccCCHH---HHHHHHH
Confidence            5789999999888   34455666765 5999999998766554332   2  1   3677888886432   2222222


Q ss_pred             ccccccccCCCCCCceeEEEEeCC
Q 026513          147 DLSSHKIRGISQTEKYDVVIANIL  170 (237)
Q Consensus       147 ~~~~~~~~~~~~~~~fD~I~~n~~  170 (237)
                      ..    .   ..-++.|++|.|..
T Consensus        72 ~~----~---~~~g~iDilVnnAg   88 (254)
T d1hdca_          72 YA----R---EEFGSVDGLVNNAG   88 (254)
T ss_dssp             HH----H---HHHSCCCEEEECCC
T ss_pred             HH----H---HHcCCccEEEecCc
Confidence            21    0   00257899998764

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=91.31  E-value=0.34  Score=33.19  Aligned_cols=92  Identities=14%  Similarity=0.145  Sum_probs=50.2

Q ss_pred             eEEEEcCcchHHHHHHH----HhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccccc
Q 026513           73 LFLDYGTGSGILGIAAI----KFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDL  148 (237)
Q Consensus        73 ~vLDlG~G~G~~~~~la----~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~  148 (237)
                      +++-+|+|  .++..++    +.| ..|+.+|.+++.++.++..    +       ...+.+|..++.+-       +  
T Consensus         2 ~~iIiG~G--~~G~~la~~L~~~g-~~vvvid~d~~~~~~~~~~----~-------~~~~~gd~~~~~~l-------~--   58 (134)
T d2hmva1           2 QFAVIGLG--RFGGSIVKELHRMG-HEVLAVDINEEKVNAYASY----A-------THAVIANATEENEL-------L--   58 (134)
T ss_dssp             CEEEECCS--HHHHHHHHHHHHTT-CCCEEEESCHHHHHHTTTT----C-------SEEEECCTTCTTHH-------H--
T ss_pred             EEEEECCC--HHHHHHHHHHHHCC-CeEEEecCcHHHHHHHHHh----C-------Ccceeeecccchhh-------h--
Confidence            45666665  4444443    344 5599999999998876421    2       23445776542211       0  


Q ss_pred             ccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEe
Q 026513          149 SSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGIS  194 (237)
Q Consensus       149 ~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis  194 (237)
                            .. .-..+|.+++..+-.....++..+...+.+...++..
T Consensus        59 ------~a-~i~~a~~vi~~~~~~~~~~~~~~~~~~~~~~~~iiar   97 (134)
T d2hmva1          59 ------SL-GIRNFEYVIVAIGANIQASTLTTLLLKELDIPNIWVK   97 (134)
T ss_dssp             ------HH-TGGGCSEEEECCCSCHHHHHHHHHHHHHTTCSEEEEE
T ss_pred             ------cc-CCccccEEEEEcCchHHhHHHHHHHHHHcCCCcEEee
Confidence                  11 1246788887665443333433344444566666653

>d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (s)-1-phenylethanol dehydrogenase
species: Azoarcus sp. ebn1 [TaxId: 76114]

Probab=91.29  E-value=0.46  Score=36.41  Aligned_cols=83  Identities=18%  Similarity=0.114  Sum_probs=48.9

Q ss_pred             CCCeEEEEcCcch---HHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccc
Q 026513           70 GGELFLDYGTGSG---ILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVE  146 (237)
Q Consensus        70 ~~~~vLDlG~G~G---~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  146 (237)
                      +|+.+|-.|.+.|   .++..+++.|. +|+.+|.++.  +.+++.++..+.     ++.++.+|+.+..-   +..+++
T Consensus         4 ~gKvalVTGas~GIG~aia~~la~~Ga-~V~~~~~~~~--~~~~~~~~~~g~-----~~~~~~~Dvs~~~~---v~~~~~   72 (247)
T d2ew8a1           4 KDKLAVITGGANGIGRAIAERFAVEGA-DIAIADLVPA--PEAEAAIRNLGR-----RVLTVKCDVSQPGD---VEAFGK   72 (247)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCC--HHHHHHHHHTTC-----CEEEEECCTTCHHH---HHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCch--HHHHHHHHHcCC-----cEEEEEeeCCCHHH---HHHHHH
Confidence            4788998998777   34445566665 5888998764  233334444442     37778888875321   222222


Q ss_pred             ccccccccCCCCCCceeEEEEeCC
Q 026513          147 DLSSHKIRGISQTEKYDVVIANIL  170 (237)
Q Consensus       147 ~~~~~~~~~~~~~~~fD~I~~n~~  170 (237)
                      ..       ...-++.|+++.|..
T Consensus        73 ~~-------~~~~G~iDilVnnAG   89 (247)
T d2ew8a1          73 QV-------ISTFGRCDILVNNAG   89 (247)
T ss_dssp             HH-------HHHHSCCCEEEECCC
T ss_pred             HH-------HHHcCCCCEEEECCC
Confidence            21       001257999998764

>d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Thermus thermophilus [TaxId: 274]

Probab=91.26  E-value=0.32  Score=37.35  Aligned_cols=83  Identities=13%  Similarity=0.060  Sum_probs=50.5

Q ss_pred             CCCeEEEEcCcc--h---HHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccc
Q 026513           70 GGELFLDYGTGS--G---ILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGV  144 (237)
Q Consensus        70 ~~~~vLDlG~G~--G---~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~  144 (237)
                      .|+++|-.|+++  |   .++..+++.|+ +|+..+.++...+.+++.....+.      ..++..|+.+..   .++++
T Consensus         7 ~gK~alITGas~~~GIG~aiA~~la~~Ga-~V~i~~~~~~~~~~~~~~~~~~~~------~~~~~~D~~~~~---~v~~~   76 (256)
T d1ulua_           7 SGKKALVMGVTNQRSLGFAIAAKLKEAGA-EVALSYQAERLRPEAEKLAEALGG------ALLFRADVTQDE---ELDAL   76 (256)
T ss_dssp             TTCEEEEESCCCSSSHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHHHHHTTC------CEEEECCTTCHH---HHHHH
T ss_pred             CCCEEEEECCCCCchHHHHHHHHHHHCCC-EEEEEeCcHHHHHHHHHhhhccCc------ccccccccCCHH---HHHHH
Confidence            588999999754  4   24445666765 588999998877777666554431      445677776422   12222


Q ss_pred             ccccccccccCCCCCCceeEEEEeC
Q 026513          145 VEDLSSHKIRGISQTEKYDVVIANI  169 (237)
Q Consensus       145 ~~~~~~~~~~~~~~~~~fD~I~~n~  169 (237)
                      ++...       ..-++.|+++.|.
T Consensus        77 ~~~~~-------~~~g~iDilVnna   94 (256)
T d1ulua_          77 FAGVK-------EAFGGLDYLVHAI   94 (256)
T ss_dssp             HHHHH-------HHHSSEEEEEECC
T ss_pred             HHHHH-------HhcCCceEEEecc
Confidence            22210       0125799998765

>d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus, TTHB020 [TaxId: 274]

Probab=91.04  E-value=0.62  Score=35.49  Aligned_cols=108  Identities=17%  Similarity=0.113  Sum_probs=64.0

Q ss_pred             CCCeEEEEcCcchH---HHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccc
Q 026513           70 GGELFLDYGTGSGI---LGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVE  146 (237)
Q Consensus        70 ~~~~vLDlG~G~G~---~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  146 (237)
                      .|+++|-.|++.|.   ++..+++.| .+|+.++.+.+.++...+   ..+.     ++.+++.|+.+..   .++++++
T Consensus         4 ~gK~alItGas~GIG~aia~~l~~~G-~~V~~~~r~~~~~~~~~~---~~~~-----~~~~~~~Dls~~~---~i~~~~~   71 (241)
T d2a4ka1           4 SGKTILVTGAASGIGRAALDLFAREG-ASLVAVDREERLLAEAVA---ALEA-----EAIAVVADVSDPK---AVEAVFA   71 (241)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHH---TCCS-----SEEEEECCTTSHH---HHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHH---HcCC-----ceEEEEecCCCHH---HHHHHHH
Confidence            47889999988773   344455665 469999999987654433   2231     3677788886532   2222222


Q ss_pred             ccccccccCCCCCCceeEEEEeCCh-----------HH-----------HHHHHHHHhHhcCCCeEEEEecc
Q 026513          147 DLSSHKIRGISQTEKYDVVIANILL-----------NP-----------LLQLADHIVSYAKPGAVVGISGI  196 (237)
Q Consensus       147 ~~~~~~~~~~~~~~~fD~I~~n~~~-----------~~-----------~~~~l~~~~~~L~~gG~liis~~  196 (237)
                      .-.+       .-++.|+++.|...           ..           .-.+.+.+...++.++.++++..
T Consensus        72 ~i~~-------~~g~iDiLinnAg~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~k~~~~~~~~~~~i~~~ss  136 (241)
T d2a4ka1          72 EALE-------EFGRLHGVAHFAGVAHSALSWNLPLEAWEKVLRVNLTGSFLVARKAGEVLEEGGSLVLTGS  136 (241)
T ss_dssp             HHHH-------HHSCCCEEEEGGGGTTTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEEEEECC
T ss_pred             HHHH-------HhCCccEeccccccccccchhhhhccccccccccccccccccccccccccccccceeeccc
Confidence            2100       12578999987641           00           11235566677777777776544

>d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus [TaxId: 274]

Probab=90.71  E-value=0.44  Score=36.42  Aligned_cols=80  Identities=21%  Similarity=0.176  Sum_probs=49.3

Q ss_pred             CCCeEEEEcCcchH---HHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccc
Q 026513           70 GGELFLDYGTGSGI---LGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVE  146 (237)
Q Consensus        70 ~~~~vLDlG~G~G~---~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  146 (237)
                      .|+++|-.|+++|.   ++..+++.|. +|+.+|.++..++.+.+.+     .     ..++.+|+.+..   .++++++
T Consensus         4 ~gK~~lITGas~GIG~aia~~l~~~G~-~V~~~~r~~~~l~~~~~~~-----~-----~~~~~~Dv~~~~---~v~~~~~   69 (242)
T d1ulsa_           4 KDKAVLITGAAHGIGRATLELFAKEGA-RLVACDIEEGPLREAAEAV-----G-----AHPVVMDVADPA---SVERGFA   69 (242)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHTT-----T-----CEEEECCTTCHH---HHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHc-----C-----CeEEEEecCCHH---HHHHHHH
Confidence            47889999998873   3445556665 5999999998877665432     1     445677876432   2222222


Q ss_pred             ccccccccCCCCCCceeEEEEeCC
Q 026513          147 DLSSHKIRGISQTEKYDVVIANIL  170 (237)
Q Consensus       147 ~~~~~~~~~~~~~~~fD~I~~n~~  170 (237)
                      ...       ..-++.|++|.|..
T Consensus        70 ~~~-------~~~g~iDilVnnAG   86 (242)
T d1ulsa_          70 EAL-------AHLGRLDGVVHYAG   86 (242)
T ss_dssp             HHH-------HHHSSCCEEEECCC
T ss_pred             HHH-------HhcCCceEEEECCc
Confidence            210       00257999998753

>d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Retinal dehydrogenase/reductase 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.42  E-value=0.47  Score=36.49  Aligned_cols=81  Identities=22%  Similarity=0.237  Sum_probs=50.4

Q ss_pred             CCCeEEEEcCcchH---HHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccc
Q 026513           70 GGELFLDYGTGSGI---LGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVE  146 (237)
Q Consensus        70 ~~~~vLDlG~G~G~---~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  146 (237)
                      .|+++|-.|+++|.   ++..+++.|. +|+.+|.+++.++...+..     .+    +.++.+|+.+..   .++++++
T Consensus         5 ~GK~alITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~~~~~~~~~-----~~----~~~~~~Dvs~~~---~v~~~~~   71 (250)
T d1ydea1           5 AGKVVVVTGGGRGIGAGIVRAFVNSGA-RVVICDKDESGGRALEQEL-----PG----AVFILCDVTQED---DVKTLVS   71 (250)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHC-----TT----EEEEECCTTSHH---HHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHhc-----CC----CeEEEccCCCHH---HHHHHHH
Confidence            48899999988873   4445566665 5999999998877655432     22    567778876532   1222222


Q ss_pred             ccccccccCCCCCCceeEEEEeCC
Q 026513          147 DLSSHKIRGISQTEKYDVVIANIL  170 (237)
Q Consensus       147 ~~~~~~~~~~~~~~~fD~I~~n~~  170 (237)
                      ..       ...-++.|++|.|..
T Consensus        72 ~~-------~~~~g~iDilVnnAG   88 (250)
T d1ydea1          72 ET-------IRRFGRLDCVVNNAG   88 (250)
T ss_dssp             HH-------HHHHSCCCEEEECCC
T ss_pred             HH-------HHhcCCCCEEEeccc
Confidence            21       001257899998763

>d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein TTHA0369
species: Thermus thermophilus [TaxId: 274]

Probab=90.05  E-value=0.51  Score=36.22  Aligned_cols=79  Identities=20%  Similarity=0.186  Sum_probs=47.6

Q ss_pred             CCCeEEEEcCcchH---HHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccc
Q 026513           70 GGELFLDYGTGSGI---LGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVE  146 (237)
Q Consensus        70 ~~~~vLDlG~G~G~---~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  146 (237)
                      .|+++|-.|++.|.   ++..+++.|. +|+.+|.+++..+.+++.    +       ..+++.|+.+..   .++++++
T Consensus         4 ~GK~alITGas~GIG~aia~~la~~G~-~V~~~~~~~~~~~~~~~~----~-------~~~~~~Dv~~~~---~v~~~~~   68 (248)
T d2d1ya1           4 AGKGVLVTGGARGIGRAIAQAFAREGA-LVALCDLRPEGKEVAEAI----G-------GAFFQVDLEDER---ERVRFVE   68 (248)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSTTHHHHHHHH----T-------CEEEECCTTCHH---HHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHc----C-------CeEEEEeCCCHH---HHHHHHH
Confidence            58899999987773   3445666665 699999998876655432    2       234567776432   1222222


Q ss_pred             ccccccccCCCCCCceeEEEEeCC
Q 026513          147 DLSSHKIRGISQTEKYDVVIANIL  170 (237)
Q Consensus       147 ~~~~~~~~~~~~~~~fD~I~~n~~  170 (237)
                      ..       ...-++.|++|.|..
T Consensus        69 ~~-------~~~~G~iDiLVnnAG   85 (248)
T d2d1ya1          69 EA-------AYALGRVDVLVNNAA   85 (248)
T ss_dssp             HH-------HHHHSCCCEEEECCC
T ss_pred             HH-------HHhcCCCCeEEEeCc
Confidence            21       001257899998763

>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Neisseria meningitidis, serogroup B [TaxId: 487]

Probab=89.84  E-value=2.2  Score=29.65  Aligned_cols=98  Identities=9%  Similarity=0.017  Sum_probs=59.8

Q ss_pred             eEEEEcCcc-hH-HHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccccccc
Q 026513           73 LFLDYGTGS-GI-LGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDLSS  150 (237)
Q Consensus        73 ~vLDlG~G~-G~-~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~  150 (237)
                      +|.=||||+ |. +...+.+.+..++++.|.+++.++..++.   .++       .... +..                 
T Consensus         2 kI~fIG~G~MG~ai~~~l~~~~~~~i~v~~r~~~~~~~l~~~---~~~-------~~~~-~~~-----------------   53 (152)
T d1yqga2           2 NVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGAEKRERLEKE---LGV-------ETSA-TLP-----------------   53 (152)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSCEEEEECSSHHHHHHHHHH---TCC-------EEES-SCC-----------------
T ss_pred             EEEEEcCcHHHHHHHHHHHHCCCCcEEEEeCChhHHHHhhhh---ccc-------cccc-ccc-----------------
Confidence            466788876 32 34445566667899999999877655432   232       1111 111                 


Q ss_pred             ccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEeccCCCCHHHHHHHHh
Q 026513          151 HKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILSEQLPHIINRYS  209 (237)
Q Consensus       151 ~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~~~~~~~~~~~~~~~  209 (237)
                          .   -...|+||....-..    +..+.+-+++.+.+++|....-....+.+.+.
T Consensus        54 ----~---v~~~Div~lavkP~~----~~~v~~~l~~~~~~viS~~ag~~~~~l~~~l~  101 (152)
T d1yqga2          54 ----E---LHSDDVLILAVKPQD----MEAACKNIRTNGALVLSVAAGLSVGTLSRYLG  101 (152)
T ss_dssp             ----C---CCTTSEEEECSCHHH----HHHHHTTCCCTTCEEEECCTTCCHHHHHHHTT
T ss_pred             ----c---ccccceEEEecCHHH----HHHhHHHHhhcccEEeecccCCCHHHHHHHhC
Confidence                1   135799997664333    33445556777888998777777777776654

>d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sorbitol dehydrogenase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=89.82  E-value=0.55  Score=36.13  Aligned_cols=82  Identities=21%  Similarity=0.248  Sum_probs=51.2

Q ss_pred             CCCeEEEEcCcchH---HHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccc
Q 026513           70 GGELFLDYGTGSGI---LGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVE  146 (237)
Q Consensus        70 ~~~~vLDlG~G~G~---~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  146 (237)
                      +|+++|-.|+++|.   ++..+++.| .+|+.+|.+++.++.+.+.+   +.     ++.++..|+.+..   .+.++++
T Consensus         4 ~gK~alVTGas~GIG~aia~~la~~G-a~V~~~~r~~~~l~~~~~~~---~~-----~~~~~~~Dvt~~~---~v~~~~~   71 (256)
T d1k2wa_           4 DGKTALITGSARGIGRAFAEAYVREG-ARVAIADINLEAARATAAEI---GP-----AACAIALDVTDQA---SIDRCVA   71 (256)
T ss_dssp             TTEEEEEETCSSHHHHHHHHHHHHTT-EEEEEEESCHHHHHHHHHHH---CT-----TEEEEECCTTCHH---HHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHh---CC-----ceEEEEeeCCCHH---HHHHHHH
Confidence            47889999988773   444556666 46999999988777655443   22     2667788886532   1222222


Q ss_pred             ccccccccCCCCCCceeEEEEeCC
Q 026513          147 DLSSHKIRGISQTEKYDVVIANIL  170 (237)
Q Consensus       147 ~~~~~~~~~~~~~~~fD~I~~n~~  170 (237)
                      ...       ..-++.|+++.|..
T Consensus        72 ~~~-------~~~g~iDilVnnAg   88 (256)
T d1k2wa_          72 ELL-------DRWGSIDILVNNAA   88 (256)
T ss_dssp             HHH-------HHHSCCCEEEECCC
T ss_pred             HHH-------HHhCCccEEEeecc
Confidence            210       01257999998764

>d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sepiapterin reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=89.20  E-value=2.3  Score=32.21  Aligned_cols=63  Identities=11%  Similarity=0.122  Sum_probs=43.4

Q ss_pred             CCCeEEEEcCcchH---HHHHHHHh--CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccc
Q 026513           70 GGELFLDYGTGSGI---LGIAAIKF--GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTA  135 (237)
Q Consensus        70 ~~~~vLDlG~G~G~---~~~~la~~--~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~  135 (237)
                      .|+.+|--|+++|.   ++..+++.  ...+|+.++.++..++.+.+.+...+...   ++.++.+|+.+.
T Consensus         5 ~gKvalITGas~GIG~aiA~~lA~~~~~G~~Vv~~~r~~~~l~~~~~~l~~~~~~~---~~~~~~~Dvs~~   72 (259)
T d1oaaa_           5 GCAVCVLTGASRGFGRALAPQLARLLSPGSVMLVSARSESMLRQLKEELGAQQPDL---KVVLAAADLGTE   72 (259)
T ss_dssp             BSEEEEESSCSSHHHHHHHHHHHTTBCTTCEEEEEESCHHHHHHHHHHHHHHCTTS---EEEEEECCTTSH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHhcccCCCEEEEEECCHHHHHHHHHHHHhhcCCc---eEEEEEccCCCH
Confidence            36667777877773   33445542  24579999999999998887776654332   588889998753

>d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=88.86  E-value=2.1  Score=30.82  Aligned_cols=96  Identities=10%  Similarity=0.123  Sum_probs=57.7

Q ss_pred             CCCeEEEEcCc--chHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccc
Q 026513           70 GGELFLDYGTG--SGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVED  147 (237)
Q Consensus        70 ~~~~vLDlG~G--~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  147 (237)
                      ++.+||-.|..  .|..++.+++.-..+|+++.-+++..+.+++.    +...    +  +.-+-.+             
T Consensus        31 ~~~~vlV~gasGGVG~~aiQlAk~~Ga~Via~~~~~~k~~~~~~l----Gad~----v--i~~~~~~-------------   87 (177)
T d1o89a2          31 QDGEIVVTGASGGVGSTAVALLHKLGYQVVAVSGRESTHEYLKSL----GASR----V--LPRDEFA-------------   87 (177)
T ss_dssp             GGCEEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGHHHHHHH----TEEE----E--EEGGGSS-------------
T ss_pred             CCCcEEEEEccccchHHHHHHHHHcCCCeEEEecchhHHHHHHhh----cccc----c--cccccHH-------------
Confidence            34467766543  35677778876455699999999887777643    3221    1  1111000             


Q ss_pred             cccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEeccC
Q 026513          148 LSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGIL  197 (237)
Q Consensus       148 ~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~~~  197 (237)
                          .. .......+|.++ |.+..   ..+......|+++|+++..+..
T Consensus        88 ----~~-~~l~~~~~~~vv-D~Vgg---~~~~~~l~~l~~~Griv~~G~~  128 (177)
T d1o89a2          88 ----ES-RPLEKQVWAGAI-DTVGD---KVLAKVLAQMNYGGCVAACGLA  128 (177)
T ss_dssp             ----SC-CSSCCCCEEEEE-ESSCH---HHHHHHHHTEEEEEEEEECCCT
T ss_pred             ----HH-HHHHhhcCCeeE-EEcch---HHHHHHHHHhccccceEeeccc
Confidence                00 111245688876 44443   3467788899999999986554

>d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase
species: Bacillus megaterium [TaxId: 1404]

Probab=88.85  E-value=1.4  Score=33.88  Aligned_cols=85  Identities=20%  Similarity=0.140  Sum_probs=52.9

Q ss_pred             CCCeEEEEcCcchH---HHHHHHHhCCCeEEEEeCC-HHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccc
Q 026513           70 GGELFLDYGTGSGI---LGIAAIKFGAAMSVGADID-PQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVV  145 (237)
Q Consensus        70 ~~~~vLDlG~G~G~---~~~~la~~~~~~v~~vD~s-~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  145 (237)
                      .|+++|-.|++.|.   ++..+++.|. +|+.++.+ +..++.+.+.++..+.     ++.++..|+.+..   .+.+++
T Consensus         6 ~gK~alITGas~GIG~aia~~la~~G~-~Vv~~~r~~~~~~~~~~~~~~~~g~-----~~~~~~~Dvt~~~---~v~~~~   76 (261)
T d1geea_           6 EGKVVVITGSSTGLGKSMAIRFATEKA-KVVVNYRSKEDEANSVLEEIKKVGG-----EAIAVKGDVTVES---DVINLV   76 (261)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTC-----EEEEEECCTTSHH---HHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCcHHHHHHHHHHHHhcCC-----cEEEEEccCCCHH---HHHHHH
Confidence            57889999988873   4445566665 58888876 4566666666666553     3777888987532   122222


Q ss_pred             cccccccccCCCCCCceeEEEEeCC
Q 026513          146 EDLSSHKIRGISQTEKYDVVIANIL  170 (237)
Q Consensus       146 ~~~~~~~~~~~~~~~~fD~I~~n~~  170 (237)
                      +..       ...-++.|++|.|..
T Consensus        77 ~~~-------~~~~G~iDiLVnnAG   94 (261)
T d1geea_          77 QSA-------IKEFGKLDVMINNAG   94 (261)
T ss_dssp             HHH-------HHHHSCCCEEEECCC
T ss_pred             HHH-------HHHhCCCCEeeccce
Confidence            221       001257899998764

>d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Escherichia coli [TaxId: 562]

Probab=88.73  E-value=0.85  Score=34.63  Aligned_cols=47  Identities=19%  Similarity=0.051  Sum_probs=34.1

Q ss_pred             CCCeEEEEcCcc--h---HHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcC
Q 026513           70 GGELFLDYGTGS--G---ILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNN  117 (237)
Q Consensus        70 ~~~~vLDlG~G~--G---~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~  117 (237)
                      .|+++|-.|+++  |   ..+..+++.|.. |+.++.++...+.+++.....+
T Consensus         4 ~gK~~lITGass~~GIG~aiA~~l~~~G~~-V~i~~~~~~~~~~~~~~~~~~~   55 (258)
T d1qsga_           4 SGKRILVTGVASKLSIAYGIAQAMHREGAE-LAFTYQNDKLKGRVEEFAAQLG   55 (258)
T ss_dssp             TTCEEEECCCCSTTSHHHHHHHHHHHTTCE-EEEEESSTTTHHHHHHHHHHTT
T ss_pred             CCCEEEEECCCCchhHHHHHHHHHHHcCCE-EEEEeCCHHHHHHHHHHHhhcC
Confidence            588999998866  5   244556667655 8899999887777777666554

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=88.47  E-value=0.63  Score=33.57  Aligned_cols=112  Identities=14%  Similarity=0.028  Sum_probs=61.1

Q ss_pred             ccCCCeEEEEcCcchHHHHHHH-HhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccc
Q 026513           68 IKGGELFLDYGTGSGILGIAAI-KFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVE  146 (237)
Q Consensus        68 ~~~~~~vLDlG~G~G~~~~~la-~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  146 (237)
                      ..++++|+-+|+|.-.-++..+ ..+..+++.+.-+++..+...+.+....      .+.....+..             
T Consensus        15 ~~~~k~vlIlGaGGaarai~~aL~~~~~~i~I~nR~~~~a~~l~~~~~~~~------~~~~~~~~~~-------------   75 (171)
T d1p77a1          15 LRPNQHVLILGAGGATKGVLLPLLQAQQNIVLANRTFSKTKELAERFQPYG------NIQAVSMDSI-------------   75 (171)
T ss_dssp             CCTTCEEEEECCSHHHHTTHHHHHHTTCEEEEEESSHHHHHHHHHHHGGGS------CEEEEEGGGC-------------
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHcccCceeeeccchHHHHHHHHHHHhhcc------ccchhhhccc-------------
Confidence            3568899999998765554332 3456789999999877766655554322      1222222211             


Q ss_pred             ccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEeccCCCCHHHHHHHHh
Q 026513          147 DLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILSEQLPHIINRYS  209 (237)
Q Consensus       147 ~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~~~~~~~~~~~~~~~  209 (237)
                                 ....+|+++...|..............++++..++-..+..+....++...+
T Consensus        76 -----------~~~~~diiIN~tp~g~~~~~~~~~~~~~~~~~~~~D~vy~~p~~T~~l~~A~  127 (171)
T d1p77a1          76 -----------PLQTYDLVINATSAGLSGGTASVDAEILKLGSAFYDMQYAKGTDTPFIALCK  127 (171)
T ss_dssp             -----------CCSCCSEEEECCCC-------CCCHHHHHHCSCEEESCCCTTSCCHHHHHHH
T ss_pred             -----------cccccceeeecccccccccccchhhhhhcccceeeeeeccCcccHHHHHHHH
Confidence                       1357999998777654333222223344556655444443444445555544

>d1zkda1 c.66.1.52 (A:2-366) Hypothetical protein RPA4359 {Rhodopseudomonas palustris [TaxId: 1076]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RPA4359-like
domain: Hypothetical protein RPA4359
species: Rhodopseudomonas palustris [TaxId: 1076]

Probab=88.39  E-value=1.2  Score=36.01  Aligned_cols=44  Identities=16%  Similarity=0.199  Sum_probs=32.2

Q ss_pred             CCeEEEEcCcchHHHHHHHHh--------CCCeEEEEeCCHHHHHHHHHHHH
Q 026513           71 GELFLDYGTGSGILGIAAIKF--------GAAMSVGADIDPQAIKSAHQNAA  114 (237)
Q Consensus        71 ~~~vLDlG~G~G~~~~~la~~--------~~~~v~~vD~s~~~i~~a~~~~~  114 (237)
                      ...|+|+|+|+|.++.-+.+.        -..+++.+|.|+...+.-++++.
T Consensus        80 ~~~ivE~GaG~G~La~dil~~l~~~~~~~~~~~~~~vE~s~~L~~~Q~~~l~  131 (365)
T d1zkda1          80 TLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLLA  131 (365)
T ss_dssp             SEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHHST
T ss_pred             cceEEecCCcccHHHHhhhhhhcccccccccceEEEeccchhHHHHHHHHhc
Confidence            357999999999998765432        23458999999987666665543

>d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase
species: Pseudomonas sp., lb400 [TaxId: 306]

Probab=87.95  E-value=1.3  Score=34.19  Aligned_cols=56  Identities=18%  Similarity=0.114  Sum_probs=39.0

Q ss_pred             CCCeEEEEcCcchH---HHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccc
Q 026513           70 GGELFLDYGTGSGI---LGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFT  134 (237)
Q Consensus        70 ~~~~vLDlG~G~G~---~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~  134 (237)
                      +|+++|-.|+++|.   ++..+++.|. +|+.+|.+++.++...+....        ++..+..|+.+
T Consensus         4 ~gK~alITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~l~~~~~~~~~--------~~~~~~~Dv~~   62 (276)
T d1bdba_           4 KGEAVLITGGASGLGRALVDRFVAEGA-KVAVLDKSAERLAELETDHGD--------NVLGIVGDVRS   62 (276)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHGG--------GEEEEECCTTC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHcCC--------CeeEEeccccc
Confidence            48899999988773   3445566664 699999999887765544321        26677788764

>d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase (SAMT) {Clarkia breweri [TaxId: 36903]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Salicylic acid carboxyl methyltransferase (SAMT)
domain: Salicylic acid carboxyl methyltransferase (SAMT)
species: Clarkia breweri [TaxId: 36903]

Probab=87.75  E-value=0.63  Score=37.95  Aligned_cols=20  Identities=10%  Similarity=0.036  Sum_probs=14.9

Q ss_pred             HHHHHHhHhcCCCeEEEEec
Q 026513          176 QLADHIVSYAKPGAVVGISG  195 (237)
Q Consensus       176 ~~l~~~~~~L~~gG~liis~  195 (237)
                      .++..=.+-|.|||++++..
T Consensus       190 ~FL~~Ra~ELv~GG~mvl~~  209 (359)
T d1m6ex_         190 LFLRCRAQEVVPGGRMVLTI  209 (359)
T ss_dssp             HHHHHHHHHBCTTCEEEEEE
T ss_pred             HHHHHHHHHhcCCcEEEEEE
Confidence            45665566789999999953

>d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=87.66  E-value=1.4  Score=33.13  Aligned_cols=37  Identities=16%  Similarity=0.090  Sum_probs=26.9

Q ss_pred             CCCeEEEEcCcchH---HHHHHHHhCCCeEEEEeCCHHHHH
Q 026513           70 GGELFLDYGTGSGI---LGIAAIKFGAAMSVGADIDPQAIK  107 (237)
Q Consensus        70 ~~~~vLDlG~G~G~---~~~~la~~~~~~v~~vD~s~~~i~  107 (237)
                      +|+++|-.|.++|.   ++..+++.|. +|+.+|.+++.++
T Consensus         3 kgK~~lVTGas~GIG~aia~~l~~~Ga-~V~~~~r~~~~l~   42 (234)
T d1o5ia_           3 RDKGVLVLAASRGIGRAVADVLSQEGA-EVTICARNEELLK   42 (234)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHH
Confidence            47899999988773   3445556665 5999999986554

>d2oo3a1 c.66.1.59 (A:9-279) Uncharacterized protein LPG1296 {Legionella pneumophila [TaxId: 446]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: LPG1296-like
domain: Uncharacterized protein LPG1296
species: Legionella pneumophila [TaxId: 446]

Probab=87.66  E-value=0.22  Score=39.17  Aligned_cols=113  Identities=10%  Similarity=0.085  Sum_probs=71.6

Q ss_pred             EEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccccccccc
Q 026513           74 FLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDLSSHKI  153 (237)
Q Consensus        74 vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~  153 (237)
                      -+...+||-.++..+.+. ..+.+.+|..|.-.+..++++...  .    ++.+...|.++...                
T Consensus        86 ~l~~YPGSP~ia~~llR~-~Drl~l~ELHp~e~~~L~~~~~~~--~----~~~v~~~DG~~~l~----------------  142 (271)
T d2oo3a1          86 TLSYYPGSPYFAINQLRS-QDRLYLCELHPTEYNFLLKLPHFN--K----KVYVNHTDGVSKLN----------------  142 (271)
T ss_dssp             SCCEEECHHHHHHHHSCT-TSEEEEECCSHHHHHHHTTSCCTT--S----CEEEECSCHHHHHH----------------
T ss_pred             CcCcCCCCHHHHHHhCCC-CCceEEeecCHHHHHHHHHHhccC--C----CceEEcCchHHHHH----------------
Confidence            346889998887777665 567999999999988877665422  1    48888999885331                


Q ss_pred             cCCCCCCceeEEEEeCChHH---HHHHHHHHhHhcC--CCeEEEEe-ccC-CCCHHHHHHHHh
Q 026513          154 RGISQTEKYDVVIANILLNP---LLQLADHIVSYAK--PGAVVGIS-GIL-SEQLPHIINRYS  209 (237)
Q Consensus       154 ~~~~~~~~fD~I~~n~~~~~---~~~~l~~~~~~L~--~gG~liis-~~~-~~~~~~~~~~~~  209 (237)
                      ..+.+.++--+|+++||++.   +.++++.+...++  |.|.+.+- .+. ......+...+.
T Consensus       143 allPP~~rRgLVLIDPpYE~k~ey~~v~~~l~~a~kr~~~g~~~iWYPi~~~~~~~~~~~~l~  205 (271)
T d2oo3a1         143 ALLPPPEKRGLIFIDPSYERKEEYKEIPYAIKNAYSKFSTGLYCVWYPVVNKAWTEQFLRKMR  205 (271)
T ss_dssp             HHCSCTTSCEEEEECCCCCSTTHHHHHHHHHHHHHHHCTTSEEEEEEEESSHHHHHHHHHHHH
T ss_pred             hhCCCCCCceEEEecCCcCCHHHHHHHHHHHHHHHHhCCCceEEEEeeccCcHHHHHHHHHHH
Confidence            12344566779999999633   3444444444333  66666664 332 233444444444

>d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Drosophila alcohol dehydrogenase
species: Fly (Drosophila lebanonensis) [TaxId: 7225]

Probab=87.62  E-value=1.7  Score=33.08  Aligned_cols=85  Identities=11%  Similarity=0.022  Sum_probs=46.5

Q ss_pred             CCCeEEEEcCcchH---HHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccc--ccccccccc
Q 026513           70 GGELFLDYGTGSGI---LGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTA--SMNERVDGV  144 (237)
Q Consensus        70 ~~~~vLDlG~G~G~---~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~~~~  144 (237)
                      .|++||-.|+++|.   ++..+++.|..-++..+..+.. +.+.+.....+-.    ++.+...|....  .+.+..+..
T Consensus         4 ~gK~vlITGgs~GIG~~~A~~la~~G~~vii~~r~~~~~-~~~~~~~~~~~~~----~~~~~~~d~~~~~~~~~~~~~~~   78 (254)
T d1sbya1           4 TNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVENP-TALAELKAINPKV----NITFHTYDVTVPVAESKKLLKKI   78 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTCCSEEEEEESSCCH-HHHHHHHHHCTTS----EEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEECCcccH-HHHHHHHhhCCCC----CEEEEEeecCCCHHHHHHHHHHH
Confidence            48899999998883   4455666777655555655543 3233222222222    477777776421  111111111


Q ss_pred             ccccccccccCCCCCCceeEEEEeCC
Q 026513          145 VEDLSSHKIRGISQTEKYDVVIANIL  170 (237)
Q Consensus       145 ~~~~~~~~~~~~~~~~~fD~I~~n~~  170 (237)
                      .+.           -++.|+++.|..
T Consensus        79 ~~~-----------~g~iDilvnnAG   93 (254)
T d1sbya1          79 FDQ-----------LKTVDILINGAG   93 (254)
T ss_dssp             HHH-----------HSCCCEEEECCC
T ss_pred             HHH-----------cCCCCEEEeCCC
Confidence            111           257999998875

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=87.45  E-value=0.35  Score=35.55  Aligned_cols=47  Identities=11%  Similarity=-0.077  Sum_probs=35.9

Q ss_pred             cCCCeEEEEcCcch---HHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHc
Q 026513           69 KGGELFLDYGTGSG---ILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALN  116 (237)
Q Consensus        69 ~~~~~vLDlG~G~G---~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~  116 (237)
                      -+|+++|-.|++.|   .++..+++.|. +|+.++.+++.++.+.+.+..+
T Consensus        21 l~gK~vlItGasgGIG~~ia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~   70 (191)
T d1luaa1          21 VKGKKAVVLAGTGPVGMRSAALLAGEGA-EVVLCGRKLDKAQAAADSVNKR   70 (191)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHhhcc-chhhcccchHHHHHHHHHHHhc
Confidence            36899999998777   34455667764 6999999999998877776554

>d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=87.35  E-value=1.6  Score=33.16  Aligned_cols=82  Identities=15%  Similarity=0.140  Sum_probs=47.0

Q ss_pred             eEEEEcCcchH---HHHHHHHhCCCeEEEEeC-CHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccccc
Q 026513           73 LFLDYGTGSGI---LGIAAIKFGAAMSVGADI-DPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDL  148 (237)
Q Consensus        73 ~vLDlG~G~G~---~~~~la~~~~~~v~~vD~-s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~  148 (237)
                      .+|-.|++.|.   ++..+++.|. +|+..|. +++.++...+.++..+.     ++.++..|+.+..   .+.++++..
T Consensus         3 V~lITGas~GIG~a~a~~la~~Ga-~V~i~~~~~~~~~~~~~~~~~~~g~-----~~~~~~~Dv~~~~---~v~~~~~~~   73 (244)
T d1edoa_           3 VVVVTGASRGIGKAIALSLGKAGC-KVLVNYARSAKAAEEVSKQIEAYGG-----QAITFGGDVSKEA---DVEAMMKTA   73 (244)
T ss_dssp             EEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHHTC-----EEEEEECCTTSHH---HHHHHHHHH
T ss_pred             EEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCCHHHHHHHHHHHHHcCC-----cEEEEeCCCCCHH---HHHHHHHHH
Confidence            45556666552   2334455554 4766665 67777777777776653     3777888987532   122222221


Q ss_pred             ccccccCCCCCCceeEEEEeCC
Q 026513          149 SSHKIRGISQTEKYDVVIANIL  170 (237)
Q Consensus       149 ~~~~~~~~~~~~~fD~I~~n~~  170 (237)
                             ...-++.|+++.|..
T Consensus        74 -------~~~~g~iDiLVnnAg   88 (244)
T d1edoa_          74 -------IDAWGTIDVVVNNAG   88 (244)
T ss_dssp             -------HHHSSCCSEEEECCC
T ss_pred             -------HHHcCCCCccccccc
Confidence                   001257999998764

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=85.79  E-value=0.18  Score=35.81  Aligned_cols=35  Identities=6%  Similarity=0.025  Sum_probs=30.1

Q ss_pred             CceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEe
Q 026513          160 EKYDVVIANILLNPLLQLADHIVSYAKPGAVVGIS  194 (237)
Q Consensus       160 ~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis  194 (237)
                      ..+|+|+....-......++.+..+++++..++..
T Consensus        62 ~~~D~iii~vka~~~~~~~~~l~~~~~~~~~Iv~~   96 (167)
T d1ks9a2          62 ATSDLLLVTLKAWQVSDAVKSLASTLPVTTPILLI   96 (167)
T ss_dssp             HTCSEEEECSCGGGHHHHHHHHHTTSCTTSCEEEE
T ss_pred             cccceEEEeecccchHHHHHhhccccCcccEEeec
Confidence            47999999888888888899999999999887775

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=83.84  E-value=1  Score=32.75  Aligned_cols=107  Identities=13%  Similarity=0.197  Sum_probs=58.5

Q ss_pred             CeEEEEcCcc-h-HHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcC---CCCCcceEEeccCcccccccccccccccc
Q 026513           72 ELFLDYGTGS-G-ILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNN---IGPKKMKLHLVPDRTFTASMNERVDGVVE  146 (237)
Q Consensus        72 ~~vLDlG~G~-G-~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~---~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  146 (237)
                      ++|--+|+|+ | .++..++..| .+|+..|.+++.++.+.+.+...-   .....  ..  ..+         .+..+.
T Consensus         5 ~~vaViGaG~mG~~iA~~~a~~G-~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~--~~--~~~---------~~~~~~   70 (186)
T d1wdka3           5 KQAAVLGAGIMGGGIAYQSASKG-TPILMKDINEHGIEQGLAEAAKLLVGRVDKGR--MT--PAK---------MAEVLN   70 (186)
T ss_dssp             SSEEEECCHHHHHHHHHHHHHTT-CCEEEECSSHHHHHHHHHHHHHHHHHHHTTTS--SC--HHH---------HHHHHH
T ss_pred             CEEEEECcCHHHHHHHHHHHhCC-CeEEEEECCHHHHhhhhhhhhhhHHhhhcccc--cc--hhh---------hhhhhc
Confidence            4688899976 2 2334455565 459999999999988777654220   00000  00  000         000000


Q ss_pred             ccccccccCCCCCCceeEEEEeCC--hHHHHHHHHHHhHhcCCCeEEEEe
Q 026513          147 DLSSHKIRGISQTEKYDVVIANIL--LNPLLQLADHIVSYAKPGAVVGIS  194 (237)
Q Consensus       147 ~~~~~~~~~~~~~~~fD~I~~n~~--~~~~~~~l~~~~~~L~~gG~liis  194 (237)
                      ....  -.....-...|+|+-..+  +..-.+++.++...++++-.+.-+
T Consensus        71 ~i~~--~~~~~~~~~adlViEav~E~l~~K~~lf~~l~~~~~~~~IiaSn  118 (186)
T d1wdka3          71 GIRP--TLSYGDFGNVDLVVEAVVENPKVKQAVLAEVENHVREDAILASN  118 (186)
T ss_dssp             HEEE--ESSSTTGGGCSEEEECCCSCHHHHHHHHHHHHTTSCTTCEEEEC
T ss_pred             eeec--ccccccccccceeeeeecchHHHHHHHHHHHHhhcCCCeeEEec
Confidence            0000  000111246799997665  344467899999998888887664

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.26  E-value=1.4  Score=32.27  Aligned_cols=98  Identities=14%  Similarity=0.156  Sum_probs=60.2

Q ss_pred             CeEEEEcCcc-h-HHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHc-------CCCCC-c----------ceEEeccCc
Q 026513           72 ELFLDYGTGS-G-ILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALN-------NIGPK-K----------MKLHLVPDR  131 (237)
Q Consensus        72 ~~vLDlG~G~-G-~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~-------~~~~~-~----------~~v~~~~~d  131 (237)
                      ++|--+|+|. | .++..++..| ..|+..|.+++.++.+++.+...       +.... .          .++.+. .|
T Consensus         5 kkvaViGaG~mG~~iA~~~a~~G-~~V~l~D~~~~~l~~a~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~i~~~-~d   82 (192)
T d1f0ya2           5 KHVTVIGGGLMGAGIAQVAAATG-HTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIATS-TD   82 (192)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTT-CEEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEEEE-SC
T ss_pred             EEEEEECcCHHHHHHHHHHHhCC-CcEEEEECChHHHHHHHhhHHHHHHHHHHhhhhccchhhHHHHHHHHhhcccc-ch
Confidence            4688899986 3 4445555665 45999999999999888765422       11100 0          001100 01


Q ss_pred             cccccccccccccccccccccccCCCCCCceeEEEEeCC--hHHHHHHHHHHhHhcCCCeEEEEe
Q 026513          132 TFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANIL--LNPLLQLADHIVSYAKPGAVVGIS  194 (237)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~--~~~~~~~l~~~~~~L~~gG~liis  194 (237)
                      ..                     .  .-...|+|+-..+  +..-.+++..+.+.++++..+.-+
T Consensus        83 ~~---------------------~--a~~~ad~ViEav~E~l~~K~~v~~~l~~~~~~~~ilasn  124 (192)
T d1f0ya2          83 AA---------------------S--VVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASN  124 (192)
T ss_dssp             HH---------------------H--HTTSCSEEEECCCSCHHHHHHHHHHHTTTSCTTCEEEEC
T ss_pred             hH---------------------h--hhcccceehhhcccchhHHHHHHHHHhhhcccCceeecc
Confidence            00                     0  0245799997665  344467899999999999777664

>d2fr1a1 c.2.1.2 (A:1657-1915) Erythromycin synthase, eryAI, 1st ketoreductase module {Saccharopolyspora erythraea [TaxId: 1836]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Erythromycin synthase, eryAI, 1st ketoreductase module
species: Saccharopolyspora erythraea [TaxId: 1836]

Probab=81.93  E-value=1.6  Score=33.11  Aligned_cols=87  Identities=10%  Similarity=0.001  Sum_probs=47.7

Q ss_pred             ccCCCeEEEEcCcch---HHHHHHHHhCCCeEEEEeCC---HHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccc
Q 026513           68 IKGGELFLDYGTGSG---ILGIAAIKFGAAMSVGADID---PQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERV  141 (237)
Q Consensus        68 ~~~~~~vLDlG~G~G---~~~~~la~~~~~~v~~vD~s---~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~  141 (237)
                      ++|+.++|-.|.+.|   .++..+++.|..+|+.+--+   .+..+...+.+...+.     ++.++..|+.+..-   +
T Consensus         6 ~~p~gt~lVTGgs~GIG~a~a~~la~~Ga~~vvl~~R~~~~~~~~~~~~~~l~~~g~-----~v~~~~~Dv~d~~~---~   77 (259)
T d2fr1a1           6 WKPTGTVLVTGGTGGVGGQIARWLARRGAPHLLLVSRSGPDADGAGELVAELEALGA-----RTTVAACDVTDRES---V   77 (259)
T ss_dssp             CCCCSEEEEETTTSHHHHHHHHHHHHHTCSEEEEEESSGGGSTTHHHHHHHHHHTTC-----EEEEEECCTTCHHH---H
T ss_pred             cCCcCEEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCccCHHHHHHHHHHHHhccc-----cccccccccchHHH---H
Confidence            567889999996655   33445566787767665322   2223333333343342     48888888865321   2


Q ss_pred             cccccccccccccCCCCCCceeEEEEeCC
Q 026513          142 DGVVEDLSSHKIRGISQTEKYDVVIANIL  170 (237)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~fD~I~~n~~  170 (237)
                      ..+++.        .......|.|+.|..
T Consensus        78 ~~~~~~--------i~~~~~i~~vv~~ag   98 (259)
T d2fr1a1          78 RELLGG--------IGDDVPLSAVFHAAA   98 (259)
T ss_dssp             HHHHHT--------SCTTSCEEEEEECCC
T ss_pred             HHhhcc--------ccccccccccccccc
Confidence            222221        222346888887664