Citrus Sinensis ID: 026545

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------
Protein Sequence
MIGVGKIKQYSNVLDKPLSKGKQEVSLSAFAFLFSELVQYNQTQVDNIAELERRLEDAGYAVGARVLELLCHRDKGNRRETRLLGILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISEKELLVNRFISIPKDMGTFNCGAFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTTILIKFAEEQKYPSIFLTSLPCLNPPQKLGTTEGSKAGLILAPKLSYLIRLNVSQQNDEAV
Secondary Structure (PSIPRED)
cccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHccccccccccccccccEEEEEcccccEEEEEEcccccccccccHHHHHHHHHHHHHccccEEEEEEEccccccccccEEEEEEccccccccccccccccccccccccccccccccEEEEcccccEEEEEcccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccHHcHHHHHHHHHHHHHHHHHccccHHHHHHHHHHccccHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHcccHHHHHcccccccEEEEEcccccEEEEEEcccccccccHHHHHHHHHHHHHHcccccEEEEEEEccccccccccEEEEEEEcHHccccEEEEccccccccccccccccccHHHHEEccHcHEEEEEEccccccccc
Coil and Loop (DISEMBL)
migvgkikqysnvldkplskgkqeVSLSAFAFLFSELVQYNQTQVDNIAELERRLEDAGYAVGARVLELLCHrdkgnrreTRLLGILSFVHSTVWKVLFGKVADslekgtehedeYMISEKELLVNRFisipkdmgtfncgAFVAGIVRGvldsagfpavvtahfvpvegqqrprtTILIKFAeeqkypsifltslpclnppqklgttegskaglilapKLSYLIRLNVsqqndeav
Flexible Loop (DISEMBL)
migvgkikqysnvldkplskGKQEVSLSAFAFLFSELVQYNQTQVDNIAELERRLEDAGYAVGARVLELLchrdkgnrreTRLLGILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISEKELLVNRFISIPKDMGTFNCGAFVAGIVRGVLDSAGFPAVVTAhfvpvegqqrpRTTILIKFAEEQKYPSIFLTSLPCLNPPQKLGTTEGSKAGLILAPKLSYLIrlnvsqqndeav
Low Complexity Region (SEG)
MIGVGKIKQYSNVLDKPLSKGKQEVSLSAFAFLFSELVQYNQTQVDNIAELERRLEDAGYAVGARVLELLCHRDKGNRRETRLLGILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISEKELLVNRFISIPKDMGTFNCGAFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTTILIKFAEEQKYPSIFLTSLPCLNPPQKLGTTEGSKAGLILAPKLSYLIRLNVSQQNDEAV
Disordered region (IsUnstruct)
************************VSLSAFAFLFSELVQYNQTQVDNIAELERRLEDAGYAVGARVLELLCHRDKGNRRETRLLGILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISEKELLVNRFISIPKDMGTFNCGAFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTTILIKFAEEQKYPSIFLTSLPCLNPPQKLGTTEGSKAGLILAPKLSYLIRLN*********
Disordered Region (DISOPRED)
*****************************FAFLFSELVQYNQTQVDNIAELERRLEDAGYAVGARVLELLCHRDKGNRRETRLLGILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISEKELLVNRFISIPKDMGTFNCGAFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTTILIKFAEEQK****************************ILAPKLSYLIRLN*********
Disordered Region (DISEMBL)
MIGVGKIKQYSNVLDKPLSKGKQEVSLSAFAFLFSELVQYNQTQVDNIAELERRLEDAGYAVGARVLELLCHRDKGNRRETRLLGILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISEKELLVNRFISIPKDMGTFNCGAFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTTILIKFAEEQKYPSIFLTSLPCLNPPQKLGTTEGSKAGLILAPKLSYLIRLNV********
Disordered Region (DISPRO)
*****************LSKGKQEVSLSAFAFLFSELVQYNQTQVDNIAELERRLEDAGYAVGARVLELLCHRDKGNRRETRLLGILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISEKELLVNRFISIPKDMGTFNCGAFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTTILIKFAEEQKYPSIFLTSLPCLNPPQKLGTTEGSKAGLILAPKLSYLIRLNVS*******
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MIGVGKIKQYSNVLDKPLSKGKQEVSLSAFAFLFSELVQYNQTQVDNIAELERRLEDAGYAVGARVLELLCHRDKGNRRETRLLGILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISEKELLVNRFISIPKDMGTFNCGAFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTTILIKFAEEQKYPSIFLTSLPCLNPPQKLGTTEGSKAGLILAPKLSYLIRLNVSQQNDEAV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	237	2.2.26 [Sep-21-2011]
Q54YG5	186	Trafficking protein parti	yes	no	0.734	0.935	0.614	2e-61
Q9P7N9	209	Transport protein particl	yes	no	0.717	0.813	0.517	3e-45
Q8IUR0	188	Trafficking protein parti	yes	no	0.704	0.888	0.511	2e-42
Q2NL13	188	Trafficking protein parti	yes	no	0.704	0.888	0.511	3e-42
Q9CQA1	188	Trafficking protein parti	yes	no	0.704	0.888	0.511	6e-42
Q5F359	188	Trafficking protein parti	yes	no	0.704	0.888	0.488	1e-41
P15847	184	Trafficking protein parti	yes	no	0.713	0.918	0.441	1e-31
Q7KQM2	184	Trafficking protein parti	yes	no	0.713	0.918	0.441	1e-31
Q03337	283	Trafficking protein parti	yes	no	0.434	0.363	0.425	8e-17
Q8SU25	155	Putative trafficking prot	yes	no	0.573	0.877	0.281	8e-09

>sp|Q54YG5|TPPC5_DICDI Trafficking protein particle complex subunit 5 OS=Dictyostelium discoideum GN=trappc5 PE=3 SV=1

 Score =  235 bits (599), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 107/174 (61%), Positives = 142/174 (81%)

Query: 12  NVLDKPLSKGKQEVSLSAFAFLFSELVQYNQTQVDNIAELERRLEDAGYAVGARVLELLC 71
           N++D+PLSKGK E+++S+FAFLFSE++QY Q ++    ELE++L D GY++G R+LELLC
Sbjct: 7   NIVDRPLSKGKGEINISSFAFLFSEMIQYCQDRIKAGHELEKKLSDMGYSIGPRLLELLC 66

Query: 72  HRDKGNRRETRLLGILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISEKELLVNRFISI 131
            R+K ++RET+LLGILSF+H+TVWK LFGK ADSLEK TE +DEYMIS+  ++VN+FIS+
Sbjct: 67  VREKNSKRETKLLGILSFIHTTVWKSLFGKPADSLEKSTEADDEYMISDNNMVVNKFISL 126

Query: 132 PKDMGTFNCGAFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTTILIKFAEE 185
           PK + + NC AFVAGI+ G+L SA FPA VTAH V VEG++ P+T ILIKF  E
Sbjct: 127 PKHLSSLNCAAFVAGIIEGILCSAEFPARVTAHNVAVEGKRFPKTVILIKFNPE 180

May play a role in vesicular transport from endoplasmic reticulum to Golgi.
Dictyostelium discoideum (taxid: 44689)

>sp|Q9P7N9|TRS31_SCHPO Transport protein particle subunit trs31 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=trs31 PE=3 SV=1

 Score =  181 bits (460), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 89/172 (51%), Positives = 123/172 (71%), Gaps = 2/172 (1%)

Query: 12  NVLDKPLSKGKQ-EVSLSAFAFLFSELVQYNQTQVDNIAELERRLEDAGYAVGARVLELL 70
           +V ++ L+K +  +V+LS+FAF+FSEL+Q  Q+QV  I E E +L + GY VG +++EL+
Sbjct: 27  SVYEQNLNKIRNSDVNLSSFAFIFSELIQRIQSQVSGIQEFEEKLNEHGYRVGQKLVELV 86

Query: 71  CHRDKGNRRETRLLGILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISEKELLVNRFIS 130
             R++  +RETR+LGIL ++HS+VWK LFGK ADSLEK  E  DEYMI +   L+N+FIS
Sbjct: 87  VWRERNPKRETRILGILQYIHSSVWKYLFGKHADSLEKSKEASDEYMIVDNNPLLNKFIS 146

Query: 131 IPKDMGTFNCGAFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTTILIKF 182
           +PK+M   NC A++AGI+ G LDSA FP   +AH VP+  Q   RT ILIK 
Sbjct: 147 VPKEMNQLNCCAYLAGIIEGFLDSAQFPCKASAHSVPL-SQYPYRTVILIKL 197

TRAPP plays a key role in the late stages of endoplasmic reticulum to Golgi traffic.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q8IUR0|TPPC5_HUMAN Trafficking protein particle complex subunit 5 OS=Homo sapiens GN=TRAPPC5 PE=1 SV=1

 Score =  172 bits (435), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 89/174 (51%), Positives = 118/174 (67%), Gaps = 7/174 (4%)

Query: 11  SNVLDKPLSKGKQEVSLSAFAFLFSELVQYNQTQVDNIAELERRLEDAGYAVGARVLELL 70
           S +L++ L++ + EVSLSAFA LFSELVQ+ Q++V ++AEL+ RL   G  VGARVL+ L
Sbjct: 10  SALLERALARPRTEVSLSAFALLFSELVQHCQSRVFSVAELQSRLAALGRQVGARVLDAL 69

Query: 71  CHRDKGNRRETRLLGILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISEKELLVNRFIS 130
             R+KG RRET++LG L FV   VWK LFGK AD LE+  +    + I E+E L+N +IS
Sbjct: 70  VAREKGARRETKVLGALLFVKGAVWKALFGKEADKLEQANDDARTFYIIEREPLINTYIS 129

Query: 131 IPKDMGTFNCGAFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTTILIKFAE 184
           +PK+  T NC +F AGIV  VL  +GFPA VTAH+          TT++IKF E
Sbjct: 130 VPKENSTLNCASFTAGIVEAVLTHSGFPAKVTAHW-------HKGTTLMIKFEE 176

May play a role in vesicular transport from endoplasmic reticulum to Golgi.

Homo sapiens (taxid: 9606)

>sp|Q2NL13|TPPC5_BOVIN Trafficking protein particle complex subunit 5 OS=Bos taurus GN=TRAPPC5 PE=2 SV=1

 Score =  171 bits (434), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 89/174 (51%), Positives = 117/174 (67%), Gaps = 7/174 (4%)

Query: 11  SNVLDKPLSKGKQEVSLSAFAFLFSELVQYNQTQVDNIAELERRLEDAGYAVGARVLELL 70
           S +L++ L++ + EVSLSAFA LFSELVQ+ Q++V  +AEL+ RL   G  VGARVL+ L
Sbjct: 10  SALLERALARPRTEVSLSAFALLFSELVQHCQSRVFTVAELQARLAALGRQVGARVLDAL 69

Query: 71  CHRDKGNRRETRLLGILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISEKELLVNRFIS 130
             R+KG RRET++LG L FV   VWK LFGK AD LE+  +    + I E+E L+N +IS
Sbjct: 70  VAREKGARRETKVLGALLFVKGAVWKALFGKEADKLEQANDDARTFYIIEREPLINTYIS 129

Query: 131 IPKDMGTFNCGAFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTTILIKFAE 184
           +PK+  T NC +F AGIV  VL  +GFPA VTAH+          TT++IKF E
Sbjct: 130 VPKENSTLNCASFTAGIVEAVLTHSGFPAKVTAHW-------HKGTTLMIKFEE 176

May play a role in vesicular transport from endoplasmic reticulum to Golgi.

Bos taurus (taxid: 9913)

>sp|Q9CQA1|TPPC5_MOUSE Trafficking protein particle complex subunit 5 OS=Mus musculus GN=Trappc5 PE=1 SV=1

 Score =  171 bits (432), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 89/174 (51%), Positives = 117/174 (67%), Gaps = 7/174 (4%)

Query: 11  SNVLDKPLSKGKQEVSLSAFAFLFSELVQYNQTQVDNIAELERRLEDAGYAVGARVLELL 70
           S +L++ L + + EVSLSAFA LFSELVQ+ Q++V ++AEL+ RL   G  VGARVL+ L
Sbjct: 10  SALLERALVRPRTEVSLSAFALLFSELVQHCQSRVFSVAELQARLAALGRQVGARVLDAL 69

Query: 71  CHRDKGNRRETRLLGILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISEKELLVNRFIS 130
             R+KG RRET++LG L FV   VWK LFGK AD LE+  +    + I E+E L+N +IS
Sbjct: 70  VAREKGARRETKVLGALLFVKGAVWKALFGKEADKLEQANDDARTFYIIEREPLINTYIS 129

Query: 131 IPKDMGTFNCGAFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTTILIKFAE 184
           +PK+  T NC +F AGIV  VL  +GFPA VTAH+          TT++IKF E
Sbjct: 130 VPKENSTLNCASFTAGIVEAVLTHSGFPAKVTAHW-------HKGTTLMIKFEE 176

May play a role in vesicular transport from endoplasmic reticulum to Golgi.

Mus musculus (taxid: 10090)

>sp|Q5F359|TPPC5_CHICK Trafficking protein particle complex subunit 5 OS=Gallus gallus GN=TRAPPC5 PE=2 SV=1

 Score =  170 bits (430), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 85/174 (48%), Positives = 118/174 (67%), Gaps = 7/174 (4%)

Query: 11  SNVLDKPLSKGKQEVSLSAFAFLFSELVQYNQTQVDNIAELERRLEDAGYAVGARVLELL 70
           S +L++PL + + EVSLSAFA LF ELVQY Q +V ++AEL+ +L   G+ VG R+L+ L
Sbjct: 10  SPLLERPLGRPRGEVSLSAFALLFCELVQYCQRRVYSVAELQSKLAQLGHQVGLRLLDPL 69

Query: 71  CHRDKGNRRETRLLGILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISEKELLVNRFIS 130
             R++G RRET++L +L FV   VW+ LFGK AD LE+  + +  Y + E+E LVN FIS
Sbjct: 70  VSRERGGRRETKVLSVLLFVKGPVWRALFGKEADKLEQANDDDKTYYVIEREPLVNTFIS 129

Query: 131 IPKDMGTFNCGAFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTTILIKFAE 184
           +P++  T NC AF AG+V  VL ++GFPA VTAH+          TT++IKF E
Sbjct: 130 VPRENSTLNCAAFTAGLVEAVLGASGFPAKVTAHW-------HKGTTLMIKFEE 176

May play a role in vesicular transport from endoplasmic reticulum to Golgi.

Gallus gallus (taxid: 9031)

>sp|P15847|TPPC5_PLAFA Trafficking protein particle complex subunit 5 OS=Plasmodium falciparum PE=3 SV=1

 Score =  136 bits (342), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 76/172 (44%), Positives = 106/172 (61%), Gaps = 3/172 (1%)

Query: 14  LDKPLSKGKQEVSLSAFAFLFSELVQYNQTQVDNIAELERRLEDAGYAVGARVLELLCHR 73
           ++K L++ KQ+VSLSAF+ LFSE+VQY   +      +E  L + G  VG ++ E L ++
Sbjct: 8   IEKELNRIKQDVSLSAFSILFSEMVQYCLYKSKRGYRIEDCLHEMGLRVGYKLNEYLTYK 67

Query: 74  DKGNRRETRLLGILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISEKELLVNRFISIPK 133
           +K  +R   ++ IL+F+   VWK LF   +D L K  +   EYMI +K +L+N+FI++PK
Sbjct: 68  NKV-KRSINIINILTFISKHVWKYLFQHSSDLL-KSQDSIYEYMICDKNILLNKFINVPK 125

Query: 134 DMGTFNCGAFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTTILIKFAEE 185
           D G  NC AF AGIV G L S+ F A VTAH +  EG     TTI IKF  E
Sbjct: 126 DYGNINCAAFAAGIVEGFLCSSEFQADVTAHTIH-EGDDNYNTTIFIKFYPE 176

May play a role in vesicular transport from endoplasmic reticulum to Golgi.

Plasmodium falciparum (taxid: 5833)

>sp|Q7KQM2|TPPC5_PLAF7 Trafficking protein particle complex subunit 5 OS=Plasmodium falciparum (isolate 3D7) GN=PF14_0358 PE=3 SV=1

 Score =  136 bits (342), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 76/172 (44%), Positives = 106/172 (61%), Gaps = 3/172 (1%)

Query: 14  LDKPLSKGKQEVSLSAFAFLFSELVQYNQTQVDNIAELERRLEDAGYAVGARVLELLCHR 73
           ++K L++ KQ+VSLSAF+ LFSE+VQY   +      +E  L + G  VG ++ E L ++
Sbjct: 8   IEKELNRIKQDVSLSAFSILFSEMVQYCLYKSKRGYRIEDCLHEMGLRVGYKLNEYLTYK 67

Query: 74  DKGNRRETRLLGILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISEKELLVNRFISIPK 133
           +K  +R   ++ IL+F+   VWK LF   +D L K  +   EYMI +K +L+N+FI++PK
Sbjct: 68  NKV-KRSINIINILTFISKHVWKYLFQHSSDLL-KSQDSIYEYMICDKNILLNKFINVPK 125

Query: 134 DMGTFNCGAFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTTILIKFAEE 185
           D G  NC AF AGIV G L S+ F A VTAH +  EG     TTI IKF  E
Sbjct: 126 DYGNINCAAFAAGIVEGFLCSSEFQADVTAHTIH-EGDDNYNTTIFIKFYPE 176

May play a role in vesicular transport from endoplasmic reticulum to Golgi.

Plasmodium falciparum (isolate 3D7) (taxid: 36329)

>sp|Q03337|TRS31_YEAST Trafficking protein particle complex subunit 31 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TRS31 PE=1 SV=1

 Score = 87.4 bits (215), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 46/108 (42%), Positives = 66/108 (61%), Gaps = 5/108 (4%)

Query: 75  KGNRRETRLLGILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISEKELLVNRFISIPKD 134
           K  RR+ ++L IL F+H T+W  LF  V+D L K +E ++EYMI +    + +F  IP +
Sbjct: 168 KMRRRDLKILDILQFIHGTLWSYLFNHVSDDLVKSSERDNEYMIVDNFPTLTQF--IPGE 225

Query: 135 MGTFNCGAFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTTILIKF 182
               +C  FV GI++G L +AGFP  VTAH +P +G    RT  LI+F
Sbjct: 226 --NVSCEYFVCGIIKGFLFNAGFPCGVTAHRMP-QGGHSQRTVYLIQF 270

Component of the TRAPP I, TRAPP II and TRAPP III complexes which act as guanine nucleotide exchange factors (GEF) for YPT1. TRAPP I plays a key role in the late stages of endoplasmic reticulum to Golgi traffic. TRAPP II plays a role in intra-Golgi transport. TRAPP III plays a role in autophagosome formation.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q8SU25|TRS31_ENCCU Putative trafficking protein particle complex subunit TRS31 OS=Encephalitozoon cuniculi (strain GB-M1) GN=TRS31 PE=1 SV=1

 Score = 60.8 bits (146), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 43/153 (28%), Positives = 79/153 (51%), Gaps = 17/153 (11%)

Query: 22  KQEVSLSAFAFLFSELVQYNQTQVDNIAELERRLEDAGYAVGARVLELLCHRDKGNRRET 81
           K+EV +S  ++L   +++Y   Q  +I   E  L+  GY VG ++LEL C+ ++  R  T
Sbjct: 2   KREVPVSTMSYLVCGMIEYLMEQRSDI---EADLKSIGYEVGIKLLEL-CNFEREVRIST 57

Query: 82  RL----LGILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISEKELLVNRFISIPKDMGT 137
            L      +LS V  +  +V         EK  + +  Y++++ + L +RFIS+P +   
Sbjct: 58  LLYRATFDLLSLVSDSDRRV---------EKARDVDRTYLLTDSDGLFSRFISVPDEWNG 108

Query: 138 FNCGAFVAGIVRGVLDSAGFPAVVTAHFVPVEG 170
            +  + V G+++  L ++G+ + VTA   P E 
Sbjct: 109 LSADSIVCGMIQAALMASGYDSEVTAFPEPSEN 141

May play a role in vesicular transport from endoplasmic reticulum to Golgi.

Encephalitozoon cuniculi (strain GB-M1) (taxid: 284813)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	237
224088250	194	predicted protein [Populus trichocarpa]	0.780	0.953	0.989	1e-103
225445877	194	PREDICTED: trafficking protein particle	0.780	0.953	0.989	1e-102
255565009	194	Transport protein particle subunit trs31	0.780	0.953	0.983	1e-102
388508112	194	unknown [Lotus japonicus]	0.780	0.953	0.967	1e-101
449445664	194	PREDICTED: trafficking protein particle	0.780	0.953	0.967	1e-101
224143977	194	predicted protein [Populus trichocarpa]	0.780	0.953	0.972	1e-101
297796721	195	transport protein particle component Bet	0.780	0.948	0.956	1e-100
388496864	194	unknown [Lotus japonicus]	0.780	0.953	0.956	1e-100
351721839	194	uncharacterized protein LOC100527008 [Gl	0.780	0.953	0.967	1e-100
351722761	194	uncharacterized protein LOC100500147 [Gl	0.780	0.953	0.962	1e-100

>gi|224088250|ref|XP_002308390.1| predicted protein [Populus trichocarpa] gi|118483059|gb|ABK93439.1| unknown [Populus trichocarpa] gi|222854366|gb|EEE91913.1| predicted protein [Populus trichocarpa]

 Score =  378 bits (971), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 183/185 (98%), Positives = 185/185 (100%)

Query: 1   MIGVGKIKQYSNVLDKPLSKGKQEVSLSAFAFLFSELVQYNQTQVDNIAELERRLEDAGY 60
           MIGVGKIKQYSNVL+KPLSKGKQEVSLSAFAFLFSELVQYNQTQVDNIAELERRLEDAGY
Sbjct: 1   MIGVGKIKQYSNVLEKPLSKGKQEVSLSAFAFLFSELVQYNQTQVDNIAELERRLEDAGY 60

Query: 61  AVGARVLELLCHRDKGNRRETRLLGILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISE 120
           AVGARVLELLCHRDKGNRRETRLLGILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISE
Sbjct: 61  AVGARVLELLCHRDKGNRRETRLLGILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISE 120

Query: 121 KELLVNRFISIPKDMGTFNCGAFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTTILI 180
           KELLVNRFISIPKDMGTFNCGAFVAGIVRGVLDSAGFPAVVTAHFVP+EGQQRPRTTILI
Sbjct: 121 KELLVNRFISIPKDMGTFNCGAFVAGIVRGVLDSAGFPAVVTAHFVPMEGQQRPRTTILI 180

Query: 181 KFAEE 185
           KFAEE
Sbjct: 181 KFAEE 185

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225445877|ref|XP_002279200.1| PREDICTED: trafficking protein particle complex subunit 5 [Vitis vinifera] gi|297743638|emb|CBI36521.3| unnamed protein product [Vitis vinifera]

 Score =  378 bits (971), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 183/185 (98%), Positives = 184/185 (99%)

Query: 1   MIGVGKIKQYSNVLDKPLSKGKQEVSLSAFAFLFSELVQYNQTQVDNIAELERRLEDAGY 60
           MIGVGKIKQYSNVLDKPLSKGKQEVSLSAFAFLFSELVQYNQ QVDNIAELERRLEDAGY
Sbjct: 1   MIGVGKIKQYSNVLDKPLSKGKQEVSLSAFAFLFSELVQYNQAQVDNIAELERRLEDAGY 60

Query: 61  AVGARVLELLCHRDKGNRRETRLLGILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISE 120
           AVGARVLELLCHRDKGNRRETRLLGILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISE
Sbjct: 61  AVGARVLELLCHRDKGNRRETRLLGILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISE 120

Query: 121 KELLVNRFISIPKDMGTFNCGAFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTTILI 180
           KELLVNRFISIPKDMGTFNCGAFVAGIVRGVLDSAGFPAVVTAHFVP+EGQQRPRTTILI
Sbjct: 121 KELLVNRFISIPKDMGTFNCGAFVAGIVRGVLDSAGFPAVVTAHFVPMEGQQRPRTTILI 180

Query: 181 KFAEE 185
           KFAEE
Sbjct: 181 KFAEE 185

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255565009|ref|XP_002523497.1| Transport protein particle subunit trs31, putative [Ricinus communis] gi|223537204|gb|EEF38836.1| Transport protein particle subunit trs31, putative [Ricinus communis]

 Score =  377 bits (968), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 182/185 (98%), Positives = 185/185 (100%)

Query: 1   MIGVGKIKQYSNVLDKPLSKGKQEVSLSAFAFLFSELVQYNQTQVDNIAELERRLEDAGY 60
           MIGVGKIKQYSNVLDKPLSKGKQEVSLSAFAFLFSELVQYNQTQVDNIAELERRLEDAGY
Sbjct: 1   MIGVGKIKQYSNVLDKPLSKGKQEVSLSAFAFLFSELVQYNQTQVDNIAELERRLEDAGY 60

Query: 61  AVGARVLELLCHRDKGNRRETRLLGILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISE 120
           AVGARVLELLCHR+KGNRRETRLLGILSFVH+TVWKVLFGKVADSLEKGTEHEDEYMISE
Sbjct: 61  AVGARVLELLCHREKGNRRETRLLGILSFVHTTVWKVLFGKVADSLEKGTEHEDEYMISE 120

Query: 121 KELLVNRFISIPKDMGTFNCGAFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTTILI 180
           KELLVNRFISIPKDMGTFNCGAFVAGIVRGVLDSAGFPAVVTAHFVP+EGQQRPRTTILI
Sbjct: 121 KELLVNRFISIPKDMGTFNCGAFVAGIVRGVLDSAGFPAVVTAHFVPMEGQQRPRTTILI 180

Query: 181 KFAEE 185
           KFAEE
Sbjct: 181 KFAEE 185

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388508112|gb|AFK42122.1| unknown [Lotus japonicus]

 Score =  373 bits (957), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 179/185 (96%), Positives = 184/185 (99%)

Query: 1   MIGVGKIKQYSNVLDKPLSKGKQEVSLSAFAFLFSELVQYNQTQVDNIAELERRLEDAGY 60
           MIGVGK+KQYSNVLDKPL+KGKQEVSLSAFAFLFSELVQYNQTQVDNI ELERRLEDAGY
Sbjct: 1   MIGVGKMKQYSNVLDKPLTKGKQEVSLSAFAFLFSELVQYNQTQVDNIGELERRLEDAGY 60

Query: 61  AVGARVLELLCHRDKGNRRETRLLGILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISE 120
           AVGARVLELLCHR+KGNRRETRLLGILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISE
Sbjct: 61  AVGARVLELLCHREKGNRRETRLLGILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISE 120

Query: 121 KELLVNRFISIPKDMGTFNCGAFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTTILI 180
           KELLVN+FISIPKDMGTFNCGAFVAGIVRGVLDSAGFPAVVTAHFVP+EGQQRPRTTILI
Sbjct: 121 KELLVNKFISIPKDMGTFNCGAFVAGIVRGVLDSAGFPAVVTAHFVPMEGQQRPRTTILI 180

Query: 181 KFAEE 185
           KFAEE
Sbjct: 181 KFAEE 185

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449445664|ref|XP_004140592.1| PREDICTED: trafficking protein particle complex subunit 5-like [Cucumis sativus] gi|449521790|ref|XP_004167912.1| PREDICTED: trafficking protein particle complex subunit 5-like [Cucumis sativus]

 Score =  372 bits (956), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 179/185 (96%), Positives = 183/185 (98%)

Query: 1   MIGVGKIKQYSNVLDKPLSKGKQEVSLSAFAFLFSELVQYNQTQVDNIAELERRLEDAGY 60
           MIGVGKIKQYSNVL+KPLSKGKQEVSLSAFAFLFSELVQYNQTQVDNIAELERRLEDAGY
Sbjct: 1   MIGVGKIKQYSNVLEKPLSKGKQEVSLSAFAFLFSELVQYNQTQVDNIAELERRLEDAGY 60

Query: 61  AVGARVLELLCHRDKGNRRETRLLGILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISE 120
           AVGARVLEL CHR+KGNRRETRLLGILSFVHST+WKVLFGKVADSLEKGTEHEDEYMISE
Sbjct: 61  AVGARVLELFCHREKGNRRETRLLGILSFVHSTIWKVLFGKVADSLEKGTEHEDEYMISE 120

Query: 121 KELLVNRFISIPKDMGTFNCGAFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTTILI 180
           KELLVNRFISIPKDMG FNCGAFVAGIVRGVLD+AGFPAVVTAHFVPVEGQQRPRTTILI
Sbjct: 121 KELLVNRFISIPKDMGAFNCGAFVAGIVRGVLDNAGFPAVVTAHFVPVEGQQRPRTTILI 180

Query: 181 KFAEE 185
           KFAEE
Sbjct: 181 KFAEE 185

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224143977|ref|XP_002325144.1| predicted protein [Populus trichocarpa] gi|118489123|gb|ABK96368.1| unknown [Populus trichocarpa x Populus deltoides] gi|222866578|gb|EEF03709.1| predicted protein [Populus trichocarpa]

 Score =  372 bits (954), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 180/185 (97%), Positives = 181/185 (97%)

Query: 1   MIGVGKIKQYSNVLDKPLSKGKQEVSLSAFAFLFSELVQYNQTQVDNIAELERRLEDAGY 60
           MIGVGKIKQYSNVLDKPLSKGKQEVS SAFAFLFSELVQYNQTQVDNIAELERRLEDAGY
Sbjct: 1   MIGVGKIKQYSNVLDKPLSKGKQEVSSSAFAFLFSELVQYNQTQVDNIAELERRLEDAGY 60

Query: 61  AVGARVLELLCHRDKGNRRETRLLGILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISE 120
           AVGARVLELLCHRDKGNRRETRLLGILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISE
Sbjct: 61  AVGARVLELLCHRDKGNRRETRLLGILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISE 120

Query: 121 KELLVNRFISIPKDMGTFNCGAFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTTILI 180
           KELLVNRFISIPKDMGTFNCGAFVAGIVRGVLD AGFPAVVTAHFVP+EGQ RPRTTILI
Sbjct: 121 KELLVNRFISIPKDMGTFNCGAFVAGIVRGVLDGAGFPAVVTAHFVPMEGQHRPRTTILI 180

Query: 181 KFAEE 185
           KF EE
Sbjct: 181 KFGEE 185

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297796721|ref|XP_002866245.1| transport protein particle component Bet3 family protein [Arabidopsis lyrata subsp. lyrata] gi|297312080|gb|EFH42504.1| transport protein particle component Bet3 family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  371 bits (952), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 177/185 (95%), Positives = 185/185 (100%)

Query: 1   MIGVGKIKQYSNVLDKPLSKGKQEVSLSAFAFLFSELVQYNQTQVDNIAELERRLEDAGY 60
           MIGVGK+KQYSNVLDKPLSKGKQEVSL+AFAFLFSELVQYNQTQVDNIAELERRLEDAGY
Sbjct: 1   MIGVGKMKQYSNVLDKPLSKGKQEVSLTAFAFLFSELVQYNQTQVDNIAELERRLEDAGY 60

Query: 61  AVGARVLELLCHRDKGNRRETRLLGILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISE 120
           AVG+RVLELLC+R+KGNRRETRLLGILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISE
Sbjct: 61  AVGSRVLELLCNREKGNRRETRLLGILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISE 120

Query: 121 KELLVNRFISIPKDMGTFNCGAFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTTILI 180
           KELLVNRFISIPKDMGTFNCGAFVAGIV+GVLD+AGFPAVVTAHFVP+EGQQRPRTTILI
Sbjct: 121 KELLVNRFISIPKDMGTFNCGAFVAGIVKGVLDNAGFPAVVTAHFVPIEGQQRPRTTILI 180

Query: 181 KFAEE 185
           KFAEE
Sbjct: 181 KFAEE 185

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388496864|gb|AFK36498.1| unknown [Lotus japonicus]

 Score =  371 bits (952), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 177/185 (95%), Positives = 183/185 (98%)

Query: 1   MIGVGKIKQYSNVLDKPLSKGKQEVSLSAFAFLFSELVQYNQTQVDNIAELERRLEDAGY 60
           MIGVGK+KQYSN+LDKPL+KGKQEVSLSAFAFLFSELVQYNQTQVDNI ELERRLEDAGY
Sbjct: 1   MIGVGKMKQYSNILDKPLTKGKQEVSLSAFAFLFSELVQYNQTQVDNIGELERRLEDAGY 60

Query: 61  AVGARVLELLCHRDKGNRRETRLLGILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISE 120
           AVGARVLELLCHR+KGNRRETRLLGILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISE
Sbjct: 61  AVGARVLELLCHREKGNRRETRLLGILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISE 120

Query: 121 KELLVNRFISIPKDMGTFNCGAFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTTILI 180
           KELLVN+FISIPKDMGTFNCGAFVAGIVRGVLDSAGFPAVVTAHFVP+EGQQRPR TILI
Sbjct: 121 KELLVNKFISIPKDMGTFNCGAFVAGIVRGVLDSAGFPAVVTAHFVPMEGQQRPRMTILI 180

Query: 181 KFAEE 185
           KFAEE
Sbjct: 181 KFAEE 185

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351721839|ref|NP_001237223.1| uncharacterized protein LOC100527008 [Glycine max] gi|255631356|gb|ACU16045.1| unknown [Glycine max]

 Score =  371 bits (952), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 179/185 (96%), Positives = 182/185 (98%)

Query: 1   MIGVGKIKQYSNVLDKPLSKGKQEVSLSAFAFLFSELVQYNQTQVDNIAELERRLEDAGY 60
           MIGVGKIKQYSNVLDKPL+KGKQEVSLSAFAFLFSELVQYNQTQVDNI ELERRLEDAGY
Sbjct: 1   MIGVGKIKQYSNVLDKPLTKGKQEVSLSAFAFLFSELVQYNQTQVDNIGELERRLEDAGY 60

Query: 61  AVGARVLELLCHRDKGNRRETRLLGILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISE 120
           AVGARVLELLC RDKGNRRETRLLGILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISE
Sbjct: 61  AVGARVLELLCRRDKGNRRETRLLGILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISE 120

Query: 121 KELLVNRFISIPKDMGTFNCGAFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTTILI 180
           KELLVN+FISIPKDMGTFNCGAFVAGIVRGVLD AGFPAVVTAHFVP+EGQQRPRTTILI
Sbjct: 121 KELLVNKFISIPKDMGTFNCGAFVAGIVRGVLDGAGFPAVVTAHFVPMEGQQRPRTTILI 180

Query: 181 KFAEE 185
           KFAEE
Sbjct: 181 KFAEE 185

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351722761|ref|NP_001237511.1| uncharacterized protein LOC100500147 [Glycine max] gi|255629460|gb|ACU15076.1| unknown [Glycine max]

 Score =  370 bits (951), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 178/185 (96%), Positives = 182/185 (98%)

Query: 1   MIGVGKIKQYSNVLDKPLSKGKQEVSLSAFAFLFSELVQYNQTQVDNIAELERRLEDAGY 60
           MIGVGKIKQYSNVLDKPL++GKQEVSLSAFAFLFSELVQYNQTQVDNI ELERRLEDAGY
Sbjct: 1   MIGVGKIKQYSNVLDKPLTRGKQEVSLSAFAFLFSELVQYNQTQVDNIGELERRLEDAGY 60

Query: 61  AVGARVLELLCHRDKGNRRETRLLGILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISE 120
           AVGARVLELLCHRDKGNRRETRLL ILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISE
Sbjct: 61  AVGARVLELLCHRDKGNRRETRLLNILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISE 120

Query: 121 KELLVNRFISIPKDMGTFNCGAFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTTILI 180
           KELLVN+FISIPKDMGTFNCGAFVAGIVRGVLD AGFPAVVTAHFVP+EGQQRPRTTILI
Sbjct: 121 KELLVNKFISIPKDMGTFNCGAFVAGIVRGVLDGAGFPAVVTAHFVPMEGQQRPRTTILI 180

Query: 181 KFAEE 185
           KFAEE
Sbjct: 181 KFAEE 185

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	237
TAIR|locus:2147770	195	AT5G58030 "AT5G58030" [Arabido	0.780	0.948	0.951	5.7e-91
DICTYBASE|DDB_G0278643	186	trappc5 "trafficking protein p	0.734	0.935	0.614	1.4e-55
POMBASE|SPBC1718.05	209	trs31 "TRAPP complex subunit T	0.713	0.808	0.520	1.1e-41
UNIPROTKB|Q5F359	188	TRAPPC5 "Trafficking protein p	0.704	0.888	0.494	4.8e-39
UNIPROTKB|F1MSD6	188	TRAPPC5 "Trafficking protein p	0.704	0.888	0.517	7.8e-39
UNIPROTKB|Q8IUR0	188	TRAPPC5 "Trafficking protein p	0.704	0.888	0.517	7.8e-39
UNIPROTKB|F1SCJ1	188	TRAPPC5 "Uncharacterized prote	0.704	0.888	0.517	7.8e-39
UNIPROTKB|Q2NL13	188	TRAPPC5 "Trafficking protein p	0.704	0.888	0.517	9.9e-39
ZFIN|ZDB-GENE-040718-185	188	trappc5 "trafficking protein p	0.704	0.888	0.488	1.3e-38
UNIPROTKB|E2RBU4	188	TRAPPC5 "Uncharacterized prote	0.704	0.888	0.517	1.6e-38

TAIR|locus:2147770 AT5G58030 "AT5G58030" [Arabidopsis thaliana (taxid:3702)]

 Score = 907 (324.3 bits), Expect = 5.7e-91, P = 5.7e-91
 Identities = 176/185 (95%), Positives = 185/185 (100%)

Query:     1 MIGVGKIKQYSNVLDKPLSKGKQEVSLSAFAFLFSELVQYNQTQVDNIAELERRLEDAGY 60
             MIGVGK+KQYSNVLDKPLSKGKQEVSL+AFAFLFSELVQYNQTQVDNIAELERRLEDAGY
Sbjct:     1 MIGVGKMKQYSNVLDKPLSKGKQEVSLTAFAFLFSELVQYNQTQVDNIAELERRLEDAGY 60

Query:    61 AVGARVLELLCHRDKGNRRETRLLGILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISE 120
             AVG+RVLELLC+R+KGNRRETRLLGILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISE
Sbjct:    61 AVGSRVLELLCNREKGNRRETRLLGILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISE 120

Query:   121 KELLVNRFISIPKDMGTFNCGAFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTTILI 180
             KELLVNRFISIPKDMGTFNCGAFVAGIV+GVLD+AGFPAVVTAHFVP+EGQQRPRTTILI
Sbjct:   121 KELLVNRFISIPKDMGTFNCGAFVAGIVKGVLDNAGFPAVVTAHFVPIEGQQRPRTTILI 180

Query:   181 KFAEE 185
             KFA+E
Sbjct:   181 KFADE 185

GO:0003674 "molecular_function" evidence=ND

GO:0005794 "Golgi apparatus" evidence=ISM

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=ISS

GO:0030244 "cellulose biosynthetic process" evidence=RCA

GO:0048193 "Golgi vesicle transport" evidence=RCA

DICTYBASE|DDB_G0278643 trappc5 "trafficking protein particle complex subunit 5" [Dictyostelium discoideum (taxid:44689)]

 Score = 573 (206.8 bits), Expect = 1.4e-55, P = 1.4e-55
 Identities = 107/174 (61%), Positives = 142/174 (81%)

Query:    12 NVLDKPLSKGKQEVSLSAFAFLFSELVQYNQTQVDNIAELERRLEDAGYAVGARVLELLC 71
             N++D+PLSKGK E+++S+FAFLFSE++QY Q ++    ELE++L D GY++G R+LELLC
Sbjct:     7 NIVDRPLSKGKGEINISSFAFLFSEMIQYCQDRIKAGHELEKKLSDMGYSIGPRLLELLC 66

Query:    72 HRDKGNRRETRLLGILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISEKELLVNRFISI 131
              R+K ++RET+LLGILSF+H+TVWK LFGK ADSLEK TE +DEYMIS+  ++VN+FIS+
Sbjct:    67 VREKNSKRETKLLGILSFIHTTVWKSLFGKPADSLEKSTEADDEYMISDNNMVVNKFISL 126

Query:   132 PKDMGTFNCGAFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTTILIKFAEE 185
             PK + + NC AFVAGI+ G+L SA FPA VTAH V VEG++ P+T ILIKF  E
Sbjct:   127 PKHLSSLNCAAFVAGIIEGILCSAEFPARVTAHNVAVEGKRFPKTVILIKFNPE 180

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

POMBASE|SPBC1718.05 trs31 "TRAPP complex subunit Trs31 (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 442 (160.7 bits), Expect = 1.1e-41, P = 1.1e-41
 Identities = 89/171 (52%), Positives = 123/171 (71%)

Query:    12 NVLDKPLSKGKQ-EVSLSAFAFLFSELVQYNQTQVDNIAELERRLEDAGYAVGARVLELL 70
             +V ++ L+K +  +V+LS+FAF+FSEL+Q  Q+QV  I E E +L + GY VG +++EL+
Sbjct:    27 SVYEQNLNKIRNSDVNLSSFAFIFSELIQRIQSQVSGIQEFEEKLNEHGYRVGQKLVELV 86

Query:    71 CHRDKGNRRETRLLGILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISEKELLVNRFIS 130
               R++  +RETR+LGIL ++HS+VWK LFGK ADSLEK  E  DEYMI +   L+N+FIS
Sbjct:    87 VWRERNPKRETRILGILQYIHSSVWKYLFGKHADSLEKSKEASDEYMIVDNNPLLNKFIS 146

Query:   131 IPKDMGTFNCGAFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTTILIK 181
             +PK+M   NC A++AGI+ G LDSA FP   +AH VP+  Q   RT ILIK
Sbjct:   147 VPKEMNQLNCCAYLAGIIEGFLDSAQFPCKASAHSVPLS-QYPYRTVILIK 196

GO:0005634 "nucleus" evidence=IDA

GO:0005635 "nuclear envelope" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005829 "cytosol" evidence=IDA

GO:0006886 "intracellular protein transport" evidence=IC

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=ISO

GO:0030008 "TRAPP complex" evidence=ISO

GO:0032313 "regulation of Rab GTPase activity" evidence=IC

GO:0017112 "Rab guanyl-nucleotide exchange factor activity" evidence=ISO

UNIPROTKB|Q5F359 TRAPPC5 "Trafficking protein particle complex subunit 5" [Gallus gallus (taxid:9031)]

 Score = 417 (151.9 bits), Expect = 4.8e-39, P = 4.8e-39
 Identities = 86/174 (49%), Positives = 120/174 (68%)

Query:    11 SNVLDKPLSKGKQEVSLSAFAFLFSELVQYNQTQVDNIAELERRLEDAGYAVGARVLELL 70
             S +L++PL + + EVSLSAFA LF ELVQY Q +V ++AEL+ +L   G+ VG R+L+ L
Sbjct:    10 SPLLERPLGRPRGEVSLSAFALLFCELVQYCQRRVYSVAELQSKLAQLGHQVGLRLLDPL 69

Query:    71 CHRDKGNRRETRLLGILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISEKELLVNRFIS 130
               R++G RRET++L +L FV   VW+ LFGK AD LE+  + +  Y + E+E LVN FIS
Sbjct:    70 VSRERGGRRETKVLSVLLFVKGPVWRALFGKEADKLEQANDDDKTYYVIEREPLVNTFIS 129

Query:   131 IPKDMGTFNCGAFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTTILIKFAE 184
             +P++  T NC AF AG+V  VL ++GFPA VTAH+   +G     TT++IKF E
Sbjct:   130 VPRENSTLNCAAFTAGLVEAVLGASGFPAKVTAHWH--KG-----TTLMIKFEE 176

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

UNIPROTKB|F1MSD6 TRAPPC5 "Trafficking protein particle complex subunit 5" [Bos taurus (taxid:9913)]

 Score = 415 (151.1 bits), Expect = 7.8e-39, P = 7.8e-39
 Identities = 90/174 (51%), Positives = 120/174 (68%)

Query:    11 SNVLDKPLSKGKQEVSLSAFAFLFSELVQYNQTQVDNIAELERRLEDAGYAVGARVLELL 70
             S +L++ L++ + EVSLSAFA LFSELVQ+ Q++V ++AEL+ RL   G  VGARVL+ L
Sbjct:    10 SALLERALARPRTEVSLSAFALLFSELVQHCQSRVFSVAELQARLAALGRQVGARVLDAL 69

Query:    71 CHRDKGNRRETRLLGILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISEKELLVNRFIS 130
               R+KG RRET++LG L FV   VWK LFGK AD LE+  +    + I E+E L+N +IS
Sbjct:    70 VAREKGARRETKVLGALLFVKGAVWKALFGKEADKLEQANDDARTFYIIEREPLINTYIS 129

Query:   131 IPKDMGTFNCGAFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTTILIKFAE 184
             +PK+  T NC +F AGIV  VL  +GFPA VTAH+   +G     TT++IKF E
Sbjct:   130 VPKENSTLNCASFTAGIVEAVLTHSGFPAKVTAHWH--KG-----TTLMIKFEE 176

GO:0030008 "TRAPP complex" evidence=IEA

UNIPROTKB|Q8IUR0 TRAPPC5 "Trafficking protein particle complex subunit 5" [Homo sapiens (taxid:9606)]

 Score = 415 (151.1 bits), Expect = 7.8e-39, P = 7.8e-39
 Identities = 90/174 (51%), Positives = 120/174 (68%)

Query:    11 SNVLDKPLSKGKQEVSLSAFAFLFSELVQYNQTQVDNIAELERRLEDAGYAVGARVLELL 70
             S +L++ L++ + EVSLSAFA LFSELVQ+ Q++V ++AEL+ RL   G  VGARVL+ L
Sbjct:    10 SALLERALARPRTEVSLSAFALLFSELVQHCQSRVFSVAELQSRLAALGRQVGARVLDAL 69

Query:    71 CHRDKGNRRETRLLGILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISEKELLVNRFIS 130
               R+KG RRET++LG L FV   VWK LFGK AD LE+  +    + I E+E L+N +IS
Sbjct:    70 VAREKGARRETKVLGALLFVKGAVWKALFGKEADKLEQANDDARTFYIIEREPLINTYIS 129

Query:   131 IPKDMGTFNCGAFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTTILIKFAE 184
             +PK+  T NC +F AGIV  VL  +GFPA VTAH+   +G     TT++IKF E
Sbjct:   130 VPKENSTLNCASFTAGIVEAVLTHSGFPAKVTAHWH--KG-----TTLMIKFEE 176

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0030008 "TRAPP complex" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

UNIPROTKB|F1SCJ1 TRAPPC5 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 415 (151.1 bits), Expect = 7.8e-39, P = 7.8e-39
 Identities = 90/174 (51%), Positives = 120/174 (68%)

Query:    11 SNVLDKPLSKGKQEVSLSAFAFLFSELVQYNQTQVDNIAELERRLEDAGYAVGARVLELL 70
             S +L++ L++ + EVSLSAFA LFSELVQ+ Q++V ++AEL+ RL   G  VGARVL+ L
Sbjct:    10 SALLERALARPRTEVSLSAFALLFSELVQHCQSRVFSVAELQARLAALGRQVGARVLDAL 69

Query:    71 CHRDKGNRRETRLLGILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISEKELLVNRFIS 130
               R+KG RRET++LG L FV   VWK LFGK AD LE+  +    + I E+E L+N +IS
Sbjct:    70 VAREKGARRETKVLGALLFVKGAVWKALFGKEADKLEQANDDARTFYIIEREPLINTYIS 129

Query:   131 IPKDMGTFNCGAFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTTILIKFAE 184
             +PK+  T NC +F AGIV  VL  +GFPA VTAH+   +G     TT++IKF E
Sbjct:   130 VPKENSTLNCASFTAGIVEAVLTHSGFPAKVTAHWH--KG-----TTLMIKFEE 176

GO:0030008 "TRAPP complex" evidence=IEA

UNIPROTKB|Q2NL13 TRAPPC5 "Trafficking protein particle complex subunit 5" [Bos taurus (taxid:9913)]

 Score = 414 (150.8 bits), Expect = 9.9e-39, P = 9.9e-39
 Identities = 90/174 (51%), Positives = 119/174 (68%)

Query:    11 SNVLDKPLSKGKQEVSLSAFAFLFSELVQYNQTQVDNIAELERRLEDAGYAVGARVLELL 70
             S +L++ L++ + EVSLSAFA LFSELVQ+ Q++V  +AEL+ RL   G  VGARVL+ L
Sbjct:    10 SALLERALARPRTEVSLSAFALLFSELVQHCQSRVFTVAELQARLAALGRQVGARVLDAL 69

Query:    71 CHRDKGNRRETRLLGILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISEKELLVNRFIS 130
               R+KG RRET++LG L FV   VWK LFGK AD LE+  +    + I E+E L+N +IS
Sbjct:    70 VAREKGARRETKVLGALLFVKGAVWKALFGKEADKLEQANDDARTFYIIEREPLINTYIS 129

Query:   131 IPKDMGTFNCGAFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTTILIKFAE 184
             +PK+  T NC +F AGIV  VL  +GFPA VTAH+   +G     TT++IKF E
Sbjct:   130 VPKENSTLNCASFTAGIVEAVLTHSGFPAKVTAHWH--KG-----TTLMIKFEE 176

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

ZFIN|ZDB-GENE-040718-185 trappc5 "trafficking protein particle complex 5" [Danio rerio (taxid:7955)]

 Score = 413 (150.4 bits), Expect = 1.3e-38, P = 1.3e-38
 Identities = 85/174 (48%), Positives = 119/174 (68%)

Query:    11 SNVLDKPLSKGKQEVSLSAFAFLFSELVQYNQTQVDNIAELERRLEDAGYAVGARVLELL 70
             S +L++ L++ K EVS+SAFA LFSE+VQY Q++V +++EL+ RL D G  VGA +L++L
Sbjct:    10 SAILERSLTRPKTEVSVSAFALLFSEMVQYCQSRVYSVSELQARLADMGQGVGASLLDVL 69

Query:    71 CHRDKGNRRETRLLGILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISEKELLVNRFIS 130
               R+K  +RET++L IL F+   VWK LFGK AD LE+  + +  Y I EKE L+N +IS
Sbjct:    70 VMREKNGKRETKVLNILLFIKVNVWKALFGKEADKLEQANDDDKTYYIIEKEPLINAYIS 129

Query:   131 IPKDMGTFNCGAFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTTILIKFAE 184
             +PK+  T NC AF  GIV  +L  +GFPA VT H+   +G     TT++IKF E
Sbjct:   130 VPKENSTLNCAAFTGGIVEAILTHSGFPAKVTVHWH--KG-----TTLMIKFDE 176

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|E2RBU4 TRAPPC5 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 412 (150.1 bits), Expect = 1.6e-38, P = 1.6e-38
 Identities = 90/174 (51%), Positives = 119/174 (68%)

Query:    11 SNVLDKPLSKGKQEVSLSAFAFLFSELVQYNQTQVDNIAELERRLEDAGYAVGARVLELL 70
             S +L++ L + + EVSLSAFA LFSELVQ+ Q++V ++AEL+ RL   G  VGARVL+ L
Sbjct:    10 SALLERALVRPRTEVSLSAFALLFSELVQHCQSRVFSVAELQARLAALGRQVGARVLDAL 69

Query:    71 CHRDKGNRRETRLLGILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISEKELLVNRFIS 130
               R+KG RRET++LG L FV   VWK LFGK AD LE+  +    + I E+E L+N +IS
Sbjct:    70 VAREKGARRETKVLGALLFVKGAVWKALFGKEADKLEQANDDARTFYIIEREPLINAYIS 129

Query:   131 IPKDMGTFNCGAFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTTILIKFAE 184
             +PK+  T NC +F AGIV  VL  +GFPA VTAH+   +G     TT++IKF E
Sbjct:   130 VPKENSTLNCASFTAGIVEAVLTHSGFPAKVTAHWH--KG-----TTLMIKFEE 176

GO:0030008 "TRAPP complex" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q54YG5	TPPC5_DICDI	No assigned EC number	0.6149	0.7341	0.9354	yes	no
Q2NL13	TPPC5_BOVIN	No assigned EC number	0.5114	0.7046	0.8882	yes	no
Q8IUR0	TPPC5_HUMAN	No assigned EC number	0.5114	0.7046	0.8882	yes	no
Q9CQA1	TPPC5_MOUSE	No assigned EC number	0.5114	0.7046	0.8882	yes	no
Q9P7N9	TRS31_SCHPO	No assigned EC number	0.5174	0.7172	0.8133	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	estExt_fgenesh4_pm.C_LG_VI0519	SubName- Full=Putative uncharacterized protein; (194 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	estExt_fgenesh4_pm.C_LG_XIII0363	SubName- Full=Putative uncharacterized protein; (186 aa)				•	•		•		0.649
	estExt_Genewise1_v1.C_2080046	hypothetical protein (136 aa)					•		•		0.400

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	237
PTZ00391	168	PTZ00391, PTZ00391, transport protein particle com	2e-68
COG5128	208	COG5128, COG5128, Transport protein particle (TRAP	2e-56
pfam04051	148	pfam04051, TRAPP, Transport protein particle (TRAP	3e-52

>gnl|CDD|240398 PTZ00391, PTZ00391, transport protein particle component (TRAPP) superfamily; Provisional

 Score =  207 bits (529), Expect = 2e-68
 Identities = 85/161 (52%), Positives = 111/161 (68%), Gaps = 2/161 (1%)

Query: 25  VSLSAFAFLFSELVQYNQTQVDNIAELERRLEDAGYAVGARVLELLCHRDKGNRRETRLL 84
           VSLS+FAFLFSE+VQY  ++      LE +L + G  VG ++ ELL +R+K  +RET++L
Sbjct: 1   VSLSSFAFLFSEIVQYCLSKSKRGYRLEDKLHEMGLRVGYKLNELLPYREKNQKRETKIL 60

Query: 85  GILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISEKELLVNRFISIPKDMGTFNCGAFV 144
            IL+F+   VWK LFG  +D L K  + +DEYMI++K LL+N+FIS+PKD+G  NC AF 
Sbjct: 61  SILTFISKHVWKYLFGHSSDLL-KSQDSDDEYMINDKNLLLNKFISVPKDLGHINCAAFA 119

Query: 145 AGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTTILIKFAEE 185
           AGIV G+L SA FPA VTAH V     +   TTILIKF  E
Sbjct: 120 AGIVEGILCSAEFPANVTAHTVEDTP-KNFSTTILIKFYPE 159

Length = 168

>gnl|CDD|227457 COG5128, COG5128, Transport protein particle (TRAPP) complex subunit [Intracellular trafficking and secretion]

 Score =  178 bits (453), Expect = 2e-56
 Identities = 71/172 (41%), Positives = 101/172 (58%), Gaps = 1/172 (0%)

Query: 11  SNVLDKPLSKGKQEVSLSAFAFLFSELVQYNQTQVDNIAELERRLEDAGYAVGARVLELL 70
            +V ++ L   K+EV LS  AFLF E+++Y   Q   I + E +L+  GY VG ++LEL 
Sbjct: 26  KSVYEQNLKIMKREVPLSTMAFLFCEMIEYLMEQRSGIQDFEAKLKSIGYEVGIKLLELC 85

Query: 71  CHRDKGNRRETRLLGILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISEKELLVNRFIS 130
             R +  +RE R+L IL  +H  +W  LFG   D LEK  E + EYMI + + L++RFIS
Sbjct: 86  NFRRRNPKREVRILTILQRIHFDLWSYLFGDSDDRLEKSREVDREYMIVDNDPLLSRFIS 145

Query: 131 IPKDMGTFNCGAFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTTILIKF 182
           +P +    +C + V GI++G L +AGFP  VTAH  P E     RT  LI+ 
Sbjct: 146 VPDEWNGLSCDSIVCGIIQGFLMAAGFPCEVTAHPEPSENLPN-RTVFLIRI 196

Length = 208

>gnl|CDD|217862 pfam04051, TRAPP, Transport protein particle (TRAPP) component

 Score =  165 bits (421), Expect = 3e-52
 Identities = 64/157 (40%), Positives = 90/157 (57%), Gaps = 9/157 (5%)

Query: 29  AFAFLFSELVQYNQTQVDNIAELERRLEDAGYAVGARVLELLCHRDKGNRRETRLLGILS 88
            FA L+ ELV Y    V+   ++  RLE  GY +G R++E L  R    +R T LL +L 
Sbjct: 1   LFALLYGELVSYLLRDVE---DVNARLEKMGYNIGQRLIERLLARSGS-KRCTDLLEVLK 56

Query: 89  FVHSTVWKVLFGKVADSLEKGTEHEDEYMISEKELLVNRFISIPKDMGTFNCGAFVAGIV 148
           F+   +WK+LFGK AD LE  T H+ EY++ + +  +++F+ +P D    N   F+ GI+
Sbjct: 57  FICKDLWKMLFGKQADVLE--TSHDGEYVLIDNDNPLSQFVELPPDYSGLNYLNFLCGII 114

Query: 149 RGVLDSAGFPAVVTAHFVPVEGQQRPRTTILIKFAEE 185
           RG L S GFPA VTAH  P+ G   P T   IKF + 
Sbjct: 115 RGALSSLGFPAKVTAHSDPLRG---PGTVFEIKFEKS 148

TRAPP plays a key role in the targeting and/or fusion of ER-to-Golgi transport vesicles with their acceptor compartment. TRAPP is a large multimeric protein that contains at least 10 subunits. This family contains many TRAPP family proteins. The Bet3 subunit is one of the better characterized TRAPP proteins and has a dimeric structure with hydrophobic channels. The channel entrances are located on a putative membrane-interacting surface that is distinctively flat, wide and decorated with positively charged residues. Bet3 is proposed to localise TRAPP to the Golgi. Length = 148

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	237
PTZ00391	168	transport protein particle component (TRAPP) super	100.0
KOG3315	191	consensus Transport protein particle (TRAPP) compl	100.0
PF04051	152	TRAPP: Transport protein particle (TRAPP) componen	100.0
COG5128	208	Transport protein particle (TRAPP) complex subunit	100.0
KOG3316	163	consensus Transport protein particle (TRAPP) compl	100.0
KOG3330	183	consensus Transport protein particle (TRAPP) compl	99.98
COG1719	158	Predicted hydrocarbon binding protein (contains V4	95.08
TIGR02019	188	BchJ bacteriochlorophyll 4-vinyl reductase. This m	85.4

>PTZ00391 transport protein particle component (TRAPP) superfamily; Provisional

Probab=100.00  E-value=3.1e-57  Score=383.18  Aligned_cols=167  Identities=51%  Similarity=0.780  Sum_probs=158.3

Q ss_pred             ccHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHhhhhhhHHHHHHhhhhcCCCCCccchHHHHHHHHHHHHHHhhccccc
Q 026545           25 VSLSAFAFLFSELVQYNQTQVDNIAELERRLEDAGYAVGARVLELLCHRDKGNRRETRLLGILSFVHSTVWKVLFGKVAD  104 (237)
Q Consensus        25 Vs~s~F~~L~~EiV~y~~~~~~~~~ev~~kLe~mGy~VG~RLiE~l~~r~k~~~R~~~~ldilkFIck~~Wk~lFgKqaD  104 (237)
                      ||+|+|+|||+|||+|+++++++++|++++|+.+||+||.||+|++..|++..+|+++++++|+|||+++|+.+||||+|
T Consensus         1 vslsafafLf~EmV~y~~~~~~~~~ele~rL~~~G~~VG~rllE~l~~r~~~~~R~~~~L~iLkFI~~~~W~~lFgk~aD   80 (168)
T PTZ00391          1 VSLSSFAFLFSEIVQYCLSKSKRGYRLEDKLHEMGLRVGYKLNELLPYREKNQKRETKILSILTFISKHVWKYLFGHSSD   80 (168)
T ss_pred             CCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHhHHHhHHHHHHHHHhccCCCccchHHHHHHHHHHHHHHHHhCchhh
Confidence            79999999999999999999999999999999999999999999999999888999999999999999999999999999


Q ss_pred             ccccccCCCCeEEEEcCCcccccceecCCCCCCcchhhhhHHHHHHHhhhCCCCeEEEEEEccCCCCCCCceEEEEEecc
Q 026545          105 SLEKGTEHEDEYMISEKELLVNRFISIPKDMGTFNCGAFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTTILIKFAE  184 (237)
Q Consensus       105 ~Lek~tn~~g~Y~L~D~~~~~~~~IS~p~e~~~l~y~af~cGIIrGaL~~lG~~a~Vta~~~~~~~~~~p~t~F~IKf~~  184 (237)
                      +| |.+||+|+|||+||+|+|++|+|+|+++++++|++|+||||||||+++||+|+||||+++++..+ .+|+|+|||++
T Consensus        81 ~L-kt~d~~~~Y~i~Dn~~~~~~~iS~p~~~~~~~~~aF~~GII~G~L~~~Gf~a~VTA~~~~~~~~~-~~t~~likf~~  158 (168)
T PTZ00391         81 LL-KSQDSDDEYMINDKNLLLNKFISVPKDLGHINCAAFAAGIVEGILCSAEFPANVTAHTVEDTPKN-FSTTILIKFYP  158 (168)
T ss_pred             hh-cccCCCCeEEEEeCchhheeeeeccccccccchhhhhHHHHHHHHhhCCCCcEEEEEeccCCCCC-CceEEEEEecH
Confidence            99 34468899999999999999999999999999999999999999999999999999999876542 39999999999


Q ss_pred             ccccCcccc
Q 026545          185 EQKYPSIFL  193 (237)
Q Consensus       185 ~v~~~e~~~  193 (237)
                      +|++||..+
T Consensus       159 ~v~~Re~~~  167 (168)
T PTZ00391        159 EVIEREKSI  167 (168)
T ss_pred             HHHHHHhhc
Confidence            999999765

>KOG3315 consensus Transport protein particle (TRAPP) complex subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=4.9e-56  Score=373.08  Aligned_cols=187  Identities=59%  Similarity=0.928  Sum_probs=179.4

Q ss_pred             CccCCCCCCCccccccCccCcccccHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHhhhhhhHHHHHHhhhhcCCCCCcc
Q 026545            2 IGVGKIKQYSNVLDKPLSKGKQEVSLSAFAFLFSELVQYNQTQVDNIAELERRLEDAGYAVGARVLELLCHRDKGNRRET   81 (237)
Q Consensus         2 ~~~~~~~~~~~i~~~~l~~~~~eVs~s~F~~L~~EiV~y~~~~~~~~~ev~~kLe~mGy~VG~RLiE~l~~r~k~~~R~~   81 (237)
                      +..+.+...++|||++|+++|.|||+|+|+|||+|||+|+++++.++.|++.+|+.+||+||.||+|++.+|||+++|++
T Consensus         4 ~~~s~~~~~s~il~~~L~~~rtEvslS~fA~Lfsemiqy~q~qv~tv~d~e~kL~~~G~~VG~rllel~~~rEr~~kREt   83 (191)
T KOG3315|consen    4 IKASTMRIPSNILDKSLSKGRTEVSLSAFAFLFSEMIQYLQSQVFTVADLETKLADYGYQVGIRLLELLNFRERGQKRET   83 (191)
T ss_pred             ccccccccccchhhhhhhccCccccHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhHHHHHHHHHHhhcchhHH
Confidence            44566777899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chHHHHHHHHHHHHHHhhcccccccccccCCCCeEEEEcCCcccccceecCCCCCCcchhhhhHHHHHHHhhhCCCCeEE
Q 026545           82 RLLGILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISEKELLVNRFISIPKDMGTFNCGAFVAGIVRGVLDSAGFPAVV  161 (237)
Q Consensus        82 ~~ldilkFIck~~Wk~lFgKqaD~Lek~tn~~g~Y~L~D~~~~~~~~IS~p~e~~~l~y~af~cGIIrGaL~~lG~~a~V  161 (237)
                      +++++|.||+.++|+.+|||.+|+|||.+++.++|+|+|++|++++|||+|+|++.+||++|+||||+|+|.+.||||.|
T Consensus        84 kilgiL~fi~~tvwk~Lfgk~ad~LEka~d~~~tYmiid~~pl~n~fISVPke~~~lnc~~fvaGIiea~L~~agfpckV  163 (191)
T KOG3315|consen   84 KILGILQFIHSTVWKYLFGKEADKLEKANDDDRTYMIIDKEPLVNTFISVPKENGTLNCAAFVAGIIEAVLDNAGFPCKV  163 (191)
T ss_pred             HHHHHHHHHHHHHHHHHhcchHHHHHhcccccceEEEEcCcchhhhceecccccCcccHHHHHHHHHHHHHHhCCCCCce
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEccCCCCCCCceEEEEEeccccccCccccc
Q 026545          162 TAHFVPVEGQQRPRTTILIKFAEEQKYPSIFLT  194 (237)
Q Consensus       162 ta~~~~~~~~~~p~t~F~IKf~~~v~~~e~~~~  194 (237)
                      |||+.| +     +|+++|||+++|++||..+.
T Consensus       164 TAh~~P-~-----gt~~~IkF~~~Viare~~l~  190 (191)
T KOG3315|consen  164 TAHWHP-E-----GTTYLIKFDESVIAREGLLE  190 (191)
T ss_pred             eeeecC-C-----CCeEEEEecHHHHhhhhhhc
Confidence            999985 2     69999999999999997653

>PF04051 TRAPP: Transport protein particle (TRAPP) component; InterPro: IPR007194 TRAPP plays a key role in the targeting and/or fusion of ER-to-Golgi transport vesicles with their acceptor compartment

Probab=100.00  E-value=2.6e-48  Score=322.58  Aligned_cols=150  Identities=46%  Similarity=0.787  Sum_probs=138.2

Q ss_pred             HHHHHHHHHHHHHHhhcCChHHHHHHHHHhhhhhhHHHHHHhhhhcCCCCCccchHHHHHHHHHHHHHHhhccccccccc
Q 026545           29 AFAFLFSELVQYNQTQVDNIAELERRLEDAGYAVGARVLELLCHRDKGNRRETRLLGILSFVHSTVWKVLFGKVADSLEK  108 (237)
Q Consensus        29 ~F~~L~~EiV~y~~~~~~~~~ev~~kLe~mGy~VG~RLiE~l~~r~k~~~R~~~~ldilkFIck~~Wk~lFgKqaD~Lek  108 (237)
                      +|+|||+|||+|++++. +.++++++|++|||+||.||+|+++.+.+..+|+++++|+++||||++|+++||||+|+|  
T Consensus         1 ~f~~l~~e~V~~~~~~~-~~~e~~~~Le~~G~~vG~rl~E~~~~~~~~~~r~~~~~~~~~fI~k~~W~~~fgk~~d~l--   77 (152)
T PF04051_consen    1 AFALLFGEMVQYLLRRE-DVEEVNKRLERMGYNVGQRLAERLLRRRKNSPRFTDILDILKFICKDFWKMLFGKQADNL--   77 (152)
T ss_dssp             HHHHHHHHHHHHHHHCS-SHHHHHHHHHHHHHHHHHHHHHHHHHHCSSTCSTSSHHHHHHHHHHHHHHHHHSS--SEE--
T ss_pred             CHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHhHHHHHHHHHHhccCcccCCHHHHHHHHHHHHHHHHhCCCCccc--
Confidence            69999999999999944 999999999999999999999999999667899999999999999999999999999999  


Q ss_pred             ccCC-CCeEEEEcCCcccccceecCCCCCCcchhhhhHHHHHHHhhhCCCCeEEEEEEccCCCCCCCceEEEEEecc
Q 026545          109 GTEH-EDEYMISEKELLVNRFISIPKDMGTFNCGAFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTTILIKFAE  184 (237)
Q Consensus       109 ~tn~-~g~Y~L~D~~~~~~~~IS~p~e~~~l~y~af~cGIIrGaL~~lG~~a~Vta~~~~~~~~~~p~t~F~IKf~~  184 (237)
                      ++|| +|+|+|+|++|+|++|+++|++++.++|++|+||||||||+++||+|+|||+.++.   ..|+|+|+|||++
T Consensus        78 ~~n~~~~~y~i~d~~~~~~~~v~~p~~~~~l~~~~f~~GiIrGaL~~lg~~~~Vta~~~~~---~~~~~~f~Ik~~~  151 (152)
T PF04051_consen   78 KTNHDRGEYVITDNDFPLNQFVSLPEEYEGLNYLAFPCGIIRGALESLGFPAEVTAESDPL---NGPQTTFQIKFEK  151 (152)
T ss_dssp             EEETTSTEEEEEEST-CCCTTSTTCGCGTTSHTTHHHHHHHHHHHHHTTEEEEEEEEECCC---GTTEEEEEEEEEH
T ss_pred             cccCCCCeEEEecCccchhhhhccchhhccCchhhhHHHHHHHHHHHCCCceEEEEEEecc---CCCCeEEEEEEec
Confidence            7888 99999999999999999999988899999999999999999999999999999843   3379999999975

TRAPP is a large multimeric protein that contains at least 10 subunits. This family contains many TRAPP family proteins. The Bet3 subunit is one of the better characterised TRAPP proteins and has a dimeric structure [] with hydrophobic channels. The channel entrances are located on a putative membrane-interacting surface that is distinctively flat, wide and decorated with positively charged residues. Bet3 is proposed to localise TRAPP to the Golgi [].; PDB: 2J3R_A 1WC9_A 2J3T_A 2PWN_A 2J3W_E 1WC8_A 3CUE_N 2C0J_B 3KXC_A 2CFH_A ....

>COG5128 Transport protein particle (TRAPP) complex subunit [Intracellular trafficking and secretion]

Probab=100.00  E-value=1.8e-48  Score=327.56  Aligned_cols=184  Identities=39%  Similarity=0.658  Sum_probs=175.0

Q ss_pred             CCccccccCccCcccccHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHhhhhhhHHHHHHhhhhcCCCCCccchHHHHHH
Q 026545           10 YSNVLDKPLSKGKQEVSLSAFAFLFSELVQYNQTQVDNIAELERRLEDAGYAVGARVLELLCHRDKGNRRETRLLGILSF   89 (237)
Q Consensus        10 ~~~i~~~~l~~~~~eVs~s~F~~L~~EiV~y~~~~~~~~~ev~~kLe~mGy~VG~RLiE~l~~r~k~~~R~~~~ldilkF   89 (237)
                      ...||+++|.-.+++|++|+|+|||.||++|+++...+.+|+|.+|.++||+||.||+|++.+|.+..+|+.+++++|+|
T Consensus        25 ~~~vy~qnl~~~~~ev~lStmaflf~emI~~l~~q~s~~~dfE~kL~~~Gy~vGikLlEL~nfr~rnpkre~rIl~iLq~  104 (208)
T COG5128          25 GKSVYEQNLKIMKREVPLSTMAFLFCEMIEYLMEQRSGIQDFEAKLKSIGYEVGIKLLELCNFRRRNPKREVRILTILQR  104 (208)
T ss_pred             chhHHHHhHHHHhccCchHHHHHHHHHHHHHHHHHhhhhHhHHHHHHHhhHHHHHHHHHHHHHhhhCccchhhHHHHHHH
Confidence            45799999966669999999999999999999999999999999999999999999999999999888999999999999


Q ss_pred             HHHHHHHHhhcccccccccccCCCCeEEEEcCCcccccceecCCCCCCcchhhhhHHHHHHHhhhCCCCeEEEEEEccCC
Q 026545           90 VHSTVWKVLFGKVADSLEKGTEHEDEYMISEKELLVNRFISIPKDMGTFNCGAFVAGIVRGVLDSAGFPAVVTAHFVPVE  169 (237)
Q Consensus        90 Ick~~Wk~lFgKqaD~Lek~tn~~g~Y~L~D~~~~~~~~IS~p~e~~~l~y~af~cGIIrGaL~~lG~~a~Vta~~~~~~  169 (237)
                      |+.++|+++||+.+|.|||..+..++|||+||+|++++|||+|+++++++|.+|+||||+|+|.+.||||.||||..|.+
T Consensus       105 ih~~lwsylf~~~~d~leKs~e~d~eYmivDn~plls~FIsvP~E~n~lsc~~~vcGiI~gfL~~agfpc~vtAh~~P~~  184 (208)
T COG5128         105 IHFDLWSYLFGDSDDRLEKSREVDREYMIVDNDPLLSRFISVPDEWNGLSCDSIVCGIIQGFLMAAGFPCEVTAHPEPSE  184 (208)
T ss_pred             HHHHHHHHHhccchHHHHHhhhcCceeEEecCchHHHHHhcCcchhcCcchHHHHHHHHHHHHHhcCCCCcceeccCccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999998877


Q ss_pred             CCCCCceEEEEEeccccccCccccc
Q 026545          170 GQQRPRTTILIKFAEEQKYPSIFLT  194 (237)
Q Consensus       170 ~~~~p~t~F~IKf~~~v~~~e~~~~  194 (237)
                      .-++ +|+|+|+|++.|++||..++
T Consensus       185 ~~p~-Rtv~lI~~d~~vi~re~v~g  208 (208)
T COG5128         185 NLPN-RTVFLIRIDDLVIAREEVLG  208 (208)
T ss_pred             CCCc-ceEEEEEecHHHHhhhhhcC
Confidence            5444 99999999999999998754

>KOG3316 consensus Transport protein particle (TRAPP) complex subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=4e-43  Score=290.25  Aligned_cols=147  Identities=26%  Similarity=0.424  Sum_probs=132.0

Q ss_pred             HHHHHHHHHHHHHHHhhcCC---------hHHHHHHHHHhhhhhhHHHHHHhhhhcCCCCCccchHHHHHHHHHHHHHHh
Q 026545           28 SAFAFLFSELVQYNQTQVDN---------IAELERRLEDAGYAVGARVLELLCHRDKGNRRETRLLGILSFVHSTVWKVL   98 (237)
Q Consensus        28 s~F~~L~~EiV~y~~~~~~~---------~~ev~~kLe~mGy~VG~RLiE~l~~r~k~~~R~~~~ldilkFIck~~Wk~l   98 (237)
                      -+|++|+.|||.++.+..+|         ..+..++||.|||+||++|.|+++   +++.|+.+.||+|||||||+|+.+
T Consensus         5 v~f~~Lh~EmV~~~~~~e~d~e~g~~~~~k~~~~~~LE~IGFqVG~~L~Erl~---~e~~rf~deLeimKFiCkDfW~~V   81 (163)
T KOG3316|consen    5 VLFDFLHNEMVHTALRSEEDSENGRASIEKSHDLARLESIGFQVGRKLSERLT---RERNRFKDELEIMKFICKDFWSIV   81 (163)
T ss_pred             HHHHHHHHHHHHHHHHhcchhhcccccccchHHHHHHHHhhhHHHHHHHHHHh---hhhhhHHHHHHHHHHHHHHHHHHH
Confidence            46999999999998886433         234779999999999999999999   457899999999999999999999


Q ss_pred             hcccccccccccCCCCeEEEEcCCcccccceecCCCCCC--cchhhhhHHHHHHHhhhCCCCeEEEEEEccCCCCCCCce
Q 026545           99 FGKVADSLEKGTEHEDEYMISEKELLVNRFISIPKDMGT--FNCGAFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRT  176 (237)
Q Consensus        99 FgKqaD~Lek~tn~~g~Y~L~D~~~~~~~~IS~p~e~~~--l~y~af~cGIIrGaL~~lG~~a~Vta~~~~~~~~~~p~t  176 (237)
                      |+||+|||  +|||+|+|||+|+.|+|++.+|-.+++..  ..|++|+||+|||+|.+||++|.|||++.     ..|.|
T Consensus        82 F~KQiDNL--rTNhrG~yVlqD~~Fr~l~~~s~G~~~~~~a~~flaFpcGliRGvLs~LGi~siVtA~v~-----slPtc  154 (163)
T KOG3316|consen   82 FKKQIDNL--RTNHRGTYVLQDNKFRWLTSMSPGTQYLEEAPKFLAFPCGLIRGVLSNLGISSIVTASVS-----SLPTC  154 (163)
T ss_pred             Hhhhhhhc--cccCCceEEEecCceeeeeecCchhHHHHhcCCeEEeehhHHHHHHhhCCCceEEeeecC-----CCCce
Confidence            99999999  99999999999999999999986655432  36999999999999999999999999997     78999


Q ss_pred             EEEEEecc
Q 026545          177 TILIKFAE  184 (237)
Q Consensus       177 ~F~IKf~~  184 (237)
                      .|+|++.+
T Consensus       155 kFhV~v~~  162 (163)
T KOG3316|consen  155 KFHVQVQP  162 (163)
T ss_pred             EEEEEecC
Confidence            99999875

>KOG3330 consensus Transport protein particle (TRAPP) complex subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.98  E-value=8.2e-33  Score=230.45  Aligned_cols=165  Identities=15%  Similarity=0.301  Sum_probs=148.1

Q ss_pred             CccCcccccHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHhhhhhhHHHHHHhhhhcCCCCCccchHHHHHHHHHHHHHH
Q 026545           18 LSKGKQEVSLSAFAFLFSELVQYNQTQVDNIAELERRLEDAGYAVGARVLELLCHRDKGNRRETRLLGILSFVHSTVWKV   97 (237)
Q Consensus        18 l~~~~~eVs~s~F~~L~~EiV~y~~~~~~~~~ev~~kLe~mGy~VG~RLiE~l~~r~k~~~R~~~~ldilkFIck~~Wk~   97 (237)
                      +-+.-.++|.++|+++|++||.++++++++.++++++|++|||+||.||+|.+++|. ..+||.|+.++...|||..+|+
T Consensus         9 i~~~~~k~naELFtLTYGaiV~ql~kDyed~e~Vn~qLdkMGyNiG~RLiedFLAks-~vpRC~dfretaevlak~afkm   87 (183)
T KOG3330|consen    9 IAKKSKKMNAELFTLTYGAIVTQLCKDYEDPEDVNKQLDKMGYNIGIRLIEDFLAKS-NVPRCVDFRETAEVLAKVAFKM   87 (183)
T ss_pred             HHHHHHhhhhhhhhhhHHHHHHHHHHhhcCHHHHHHHHHhccchhhHHHHHHHHhhc-CCchhhhHHHHHHHHHHhhhhe
Confidence            333347899999999999999999999999999999999999999999999999996 7899999999999999999999


Q ss_pred             hhcccccccccccCCCCeEEEEcCCcccccceecCC-CCCCcchhhhhHHHHHHHhhhCCCCeEEEEEEccCCCCCCCce
Q 026545           98 LFGKVADSLEKGTEHEDEYMISEKELLVNRFISIPK-DMGTFNCGAFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRT  176 (237)
Q Consensus        98 lFgKqaD~Lek~tn~~g~Y~L~D~~~~~~~~IS~p~-e~~~l~y~af~cGIIrGaL~~lG~~a~Vta~~~~~~~~~~p~t  176 (237)
                      ++|.++..- .|+.+.++|.|+-.++|+..||+.|. ..+.|+|+++.||+|||||++++++|+|+  |..|.++++..|
T Consensus        88 yLgitpsit-swss~~~efsliLe~NPL~efVe~p~d~~ssL~YsnlLcGviRGALEmV~m~~dv~--f~~d~lrGd~~t  164 (183)
T KOG3330|consen   88 YLGITPSIT-SWSSDGNEFSLILEDNPLVEFVEEPPDARSSLWYSNLLCGVIRGALEMVQMKVDVV--FLSDTLRGDSVT  164 (183)
T ss_pred             eeeccccee-eecCCCCEEEEEecCCcHHHHHHhCHHHhhhHHHHHHHHHHHHhHHHHHhhhheee--eeeehhcCCCce
Confidence            999998766 38888899998766666799997654 56779999999999999999999999998  788888888889


Q ss_pred             EEEEEecccc
Q 026545          177 TILIKFAEEQ  186 (237)
Q Consensus       177 ~F~IKf~~~v  186 (237)
                      .+.|+|.+.+
T Consensus       165 EIrv~f~r~l  174 (183)
T KOG3330|consen  165 EIRVRFLRIL  174 (183)
T ss_pred             eeeeeHHHHH
Confidence            9999998754

>COG1719 Predicted hydrocarbon binding protein (contains V4R domain) [General function prediction only]

Probab=95.08  E-value=0.57  Score=39.43  Aligned_cols=112  Identities=17%  Similarity=0.183  Sum_probs=69.0

Q ss_pred             HHHHHHHHhhhhhhHHHHHHhhhhcCCCCCccchHHHHHHHHHHHHHHhhcccccccccccCCCCeEEEEcCCcccccce
Q 026545           50 ELERRLEDAGYAVGARVLELLCHRDKGNRRETRLLGILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISEKELLVNRFI  129 (237)
Q Consensus        50 ev~~kLe~mGy~VG~RLiE~l~~r~k~~~R~~~~ldilkFIck~~Wk~lFgKqaD~Lek~tn~~g~Y~L~D~~~~~~~~I  129 (237)
                      +....+..+|+.+|..++.           .....++..|+.-  |...++.-.+.-   .+...+..+.|..+.    -
T Consensus        46 ~~~~~~y~~G~~~G~~l~~-----------~~~~~~~~~f~~~--~~~~~~~v~~~~---~~~~~~v~v~~c~~c----~  105 (158)
T COG1719          46 GAEPVLYEAGKEIGKALIK-----------EKLIEELENFLEF--WEEVGGGVLEVE---EEEPLVVEVYDCIEC----A  105 (158)
T ss_pred             CcHHHHHHHHHHHHHHhcc-----------hhchHHHHHHHHH--HHhhcceEEEcc---cCCCceEEEEcCchh----h
Confidence            4567788899999999886           1122234444433  887777655443   222355556655543    1


Q ss_pred             ecCCCCCCcchhhhhHHHHHHHhhhCCCCeEEEEEEccCCCCCCCceEEEEEecc
Q 026545          130 SIPKDMGTFNCGAFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTTILIKFAE  184 (237)
Q Consensus       130 S~p~e~~~l~y~af~cGIIrGaL~~lG~~a~Vta~~~~~~~~~~p~t~F~IKf~~  184 (237)
                      -+|.  .+-+-+.|.+|+|.|+|+...=+- +.++=+.....+.+.|.|.|+..+
T Consensus       106 ~~p~--~~ePvC~~~aG~iag~l~~~~~k~-~~v~Et~C~~~G~~~C~F~i~~~~  157 (158)
T COG1719         106 GLPG--IGEPVCHLEAGFIAGFLEEILGKK-VEVEETECAAEGDDRCVFEIRLKD  157 (158)
T ss_pred             cCCC--CCCcchhHHhhHHHHHHHHHhCCC-eEEEEEEEeecCCCceEEEEEecC
Confidence            2344  234678899999999999865332 222233344557789999999754

>TIGR02019 BchJ bacteriochlorophyll 4-vinyl reductase

Probab=85.40  E-value=4.7  Score=35.17  Aligned_cols=134  Identities=16%  Similarity=0.143  Sum_probs=71.0

Q ss_pred             ccccHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHhhhhhhHHH-HHHhhhhcCCCCCccchHHH-------HHHHHHHH
Q 026545           23 QEVSLSAFAFLFSELVQYNQTQVDNIAELERRLEDAGYAVGARV-LELLCHRDKGNRRETRLLGI-------LSFVHSTV   94 (237)
Q Consensus        23 ~eVs~s~F~~L~~EiV~y~~~~~~~~~ev~~kLe~mGy~VG~RL-iE~l~~r~k~~~R~~~~ldi-------lkFIck~~   94 (237)
                      .=|+.+.|.-|+..+=..+     ..+....-|.+.|++-|.++ ..++.-   ...+..+.+..       +.-|.|++
T Consensus        42 ~mv~E~~~~aL~~aL~~el-----G~~aa~~vl~~~G~~ta~y~l~~rIp~---~~q~~Lr~lp~~~~~r~l~~aI~k~a  113 (188)
T TIGR02019        42 GMLPESQFSTLHRWLRDTL-----GETAAARLLRESGLATADYILANRIPP---PAQRLIRALPAGLAARVLLTAIAKHA  113 (188)
T ss_pred             hcCCHHHHHHHHHHHHHHh-----CHHHHHHHHHHHhHHHHHHHHHHHhhH---HHHHHHHHCChHHHHHHHHHHHHHHH
Confidence            4467777776666553221     22345566777777666666 344331   11233333333       34458899


Q ss_pred             HHHhhcccccccccccCCCCeEEEEcCCcccccceec-CC---CCCCcchhhhhHHHHHHHhhhC-CCCeEEEEEEccCC
Q 026545           95 WKVLFGKVADSLEKGTEHEDEYMISEKELLVNRFISI-PK---DMGTFNCGAFVAGIVRGVLDSA-GFPAVVTAHFVPVE  169 (237)
Q Consensus        95 Wk~lFgKqaD~Lek~tn~~g~Y~L~D~~~~~~~~IS~-p~---e~~~l~y~af~cGIIrGaL~~l-G~~a~Vta~~~~~~  169 (237)
                      |+.-             .-|.|......|+..+ |.- |.   .-.+..-++|.+|+++|.++.+ +=++.|.  =+...
T Consensus       114 Wtf~-------------G~G~fs~~~~~~l~i~-I~ds~~a~~~~~~~P~C~~~aGife~lFs~lv~~~~~v~--Et~C~  177 (188)
T TIGR02019       114 WTFA-------------GSGKFRYVSGPPLSFE-IARNPVVAGESSDTPVCHWYAAVFERLLRRLVWPHVAVR--ETACC  177 (188)
T ss_pred             Hhhc-------------ccceEEEeeCCCeEEE-EecChhhhcCCCCCceeeeeHHHHHHHHHHHhCCCceEE--eehHh
Confidence            9432             2233444444443211 110 10   0113345789999999999874 4555554  33344


Q ss_pred             CCCCCceEEEE
Q 026545          170 GQQRPRTTILI  180 (237)
Q Consensus       170 ~~~~p~t~F~I  180 (237)
                      ..+.+.|.|.+
T Consensus       178 a~G~~~C~F~~  188 (188)
T TIGR02019       178 AKGAPRCRFEL  188 (188)
T ss_pred             hcCCCcceeeC
Confidence            45777999974

This model represents the component of bacteriochlorophyll synthetase responsible for reduction of the B-ring pendant ethylene (4-vinyl) group. It appears that this step must precede the reduction of ring D, at least by the "dark" protochlorophyllide reductase enzymes BchN, BchB and BchL. This family appears to be present in photosynthetic bacteria except for the cyanobacterial clade. Cyanobacteria must use a non-orthologous gene to carry out this required step for the biosynthesis of both bacteriochlorophyll and chlorophyll.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	237
2j3w_B	188	The Crystal Structure Of The Bet3-Trs31-Sedlin Comp		6e-43
2j3r_B	157	The Crystal Structure Of The Bet3-Trs31 Heterodimer		5e-41
3cue_B	283	Crystal Structure Of A Trapp Subassembly Activating		6e-18
2cfh_C	158	Structure Of The Bet3-Tpc6b Core Of Trapp Length =		5e-04
2bjn_A	160	X-Ray Structure Of Human Tpc6 Length = 160		5e-04
3kxc_C	158	Mutant Transport Protein Length = 158		6e-04

>pdb|2J3W|B Chain B, The Crystal Structure Of The Bet3-Trs31-Sedlin Complex. Length = 188

Iteration: 1
 Score =  170 bits (430), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 84/174 (48%), Positives = 117/174 (67%), Gaps = 7/174 (4%)
Query: 11  SNVLDKPLSKGKQEVSLSAFAFLFSELVQYNQTQVDNIAELERRLEDAGYAVGARVLELL 70
           S +L++ L++ K EVS+SAFA LFSE+VQY Q++V +++EL+ RL D G  VGA +L++L
Sbjct: 10  SAILERSLTRPKTEVSVSAFALLFSEMVQYCQSRVYSVSELQARLADMGQGVGASLLDVL 69
Query: 71  CHRDKGNRRETRLLGILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISEKELLVNRFIS 130
             R+K  +RET++L IL F+   VWK LFGK AD LE+  + +  Y I EKE L+N +IS
Sbjct: 70  VMREKNGKRETKVLNILLFIKVNVWKALFGKEADKLEQANDDDKTYYIIEKEPLINAYIS 129
Query: 131 IPKDMGTFNCGAFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTTILIKFAE 184
           +PK+  T NC AF  GIV  +L  +GFPA VT H+          TT++IKF E
Sbjct: 130 VPKENSTLNCAAFTGGIVEAILTHSGFPAKVTVHW-------HKGTTLMIKFDE 176

>pdb|2J3R|B Chain B, The Crystal Structure Of The Bet3-Trs31 Heterodimer Length = 157

Iteration: 1
 Score =  164 bits (414), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 81/163 (49%), Positives = 109/163 (66%), Gaps = 7/163 (4%)
Query: 22  KQEVSLSAFAFLFSELVQYNQTQVDNIAELERRLEDAGYAVGARVLELLCHRDKGNRRET 81
           K EVS+SAFA LFSE+VQY Q++V +++EL+ RL D G  VGA +L++L  R+K  +RET
Sbjct: 2   KTEVSVSAFALLFSEMVQYCQSRVYSVSELQARLADMGQGVGASLLDVLVMREKNGKRET 61
Query: 82  RLLGILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISEKELLVNRFISIPKDMGTFNCG 141
           ++L IL F+   VWK LFGK AD LE+  + +  Y I EKE L+N +IS+PK+  T NC 
Sbjct: 62  KVLNILLFIKVNVWKALFGKEADKLEQANDDDKTYYIIEKEPLINAYISVPKENSTLNCA 121
Query: 142 AFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTTILIKFAE 184
           AF  GIV  +L  +GFPA VT H+          TT++IKF E
Sbjct: 122 AFTGGIVEAILTHSGFPAKVTVHW-------HKGTTLMIKFDE 157

>pdb|3CUE|B Chain B, Crystal Structure Of A Trapp Subassembly Activating The Rab Ypt1p Length = 283

Iteration: 1
 Score = 87.4 bits (215), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 46/108 (42%), Positives = 66/108 (61%), Gaps = 5/108 (4%)
Query: 75  KGNRRETRLLGILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISEKELLVNRFISIPKD 134
           K  RR+ ++L IL F+H T+W  LF  V+D L K +E ++EYMI +    + +F  IP +
Sbjct: 168 KMRRRDLKILDILQFIHGTLWSYLFNHVSDDLVKSSERDNEYMIVDNFPTLTQF--IPGE 225
Query: 135 MGTFNCGAFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTTILIKF 182
               +C  FV GI++G L +AGFP  VTAH +P +G    RT  LI+F
Sbjct: 226 --NVSCEYFVCGIIKGFLFNAGFPCGVTAHRMP-QGGHSQRTVYLIQF 270

>pdb|2CFH|C Chain C, Structure Of The Bet3-Tpc6b Core Of Trapp Length = 158

Iteration: 1
 Score = 41.2 bits (95), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 31/112 (27%), Positives = 52/112 (46%), Gaps = 7/112 (6%)
Query: 54  RLEDAGYAVGARVLELLCHRDKGNRRETRLLGILSFVHSTVWKVLFGKVADSLEKGTEHE 113
           +LE+ G+ VG  ++E      K   R    L I+ F+    W  +F K  D+L   T H+
Sbjct: 35  KLENMGFRVGQGLIERFT---KDTARFKDELDIMKFICKDFWTTVFKKQIDNLR--TNHQ 89
Query: 114 DEYMISEKELLVNRFISIPKDMGTFNCG--AFVAGIVRGVLDSAGFPAVVTA 163
             Y++ + +  +   +S  K          AF  G++RG L + G  ++VTA
Sbjct: 90  GIYVLQDNKFRLLTQMSAGKQYLEHASKYLAFTCGLIRGGLSNLGIKSIVTA 141

>pdb|2BJN|A Chain A, X-Ray Structure Of Human Tpc6 Length = 160

Iteration: 1
 Score = 41.2 bits (95), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 31/112 (27%), Positives = 52/112 (46%), Gaps = 7/112 (6%)
Query: 54  RLEDAGYAVGARVLELLCHRDKGNRRETRLLGILSFVHSTVWKVLFGKVADSLEKGTEHE 113
           +LE+ G+ VG  ++E      K   R    L I+ F+    W  +F K  D+L   T H+
Sbjct: 37  KLENMGFRVGQGLIERF---TKDTARFKDELDIMKFICKDFWTTVFKKQIDNLR--TNHQ 91
Query: 114 DEYMISEKELLVNRFISIPKDMGTFNCG--AFVAGIVRGVLDSAGFPAVVTA 163
             Y++ + +  +   +S  K          AF  G++RG L + G  ++VTA
Sbjct: 92  GIYVLQDNKFRLLTQMSAGKQYLEHASKYLAFTCGLIRGGLSNLGIKSIVTA 143

>pdb|3KXC|C Chain C, Mutant Transport Protein Length = 158

Iteration: 1
 Score = 41.2 bits (95), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 31/112 (27%), Positives = 52/112 (46%), Gaps = 7/112 (6%)
Query: 54  RLEDAGYAVGARVLELLCHRDKGNRRETRLLGILSFVHSTVWKVLFGKVADSLEKGTEHE 113
           +LE+ G+ VG  ++E      K   R    L I+ F+    W  +F K  D+L   T H+
Sbjct: 35  KLENMGFRVGQGLIERF---TKDTARFKDELDIMKFICKDFWTTVFKKQIDNLR--TNHQ 89
Query: 114 DEYMISEKELLVNRFISIPKDMGTFNCG--AFVAGIVRGVLDSAGFPAVVTA 163
             Y++ + +  +   +S  K          AF  G++RG L + G  ++VTA
Sbjct: 90  GIYVLQDNKFRLLTQMSAGKQYLEHASKYLAFTCGLIRGGLSNLGIKSIVTA 141

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	237
2j3w_B	188	ZGC 92866, trafficking protein particle complex pr	7e-75
1sz7_A	200	BET3 homolog, trafficking protein particle complex	3e-57
2bjn_A	160	TPC6, trafficking protein particle complex subunit	1e-54
2c0j_B	160	R32611_2; palmitate; HET: PLM; 2.20A {Homo sapiens	2e-49
3cue_B	283	Transport protein particle 31 kDa subunit; membran	1e-48
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-04
3cue_D	193	Transport protein particle 22 kDa subunit; membran	8e-04

>2j3w_B ZGC 92866, trafficking protein particle complex protein 2; multisubunit tethering factor, trapp, palmitate, transport, lipoprotein; HET: PLM; 2.1A {Brachydanio rerio} SCOP: d.278.1.2 PDB: 2j3r_B* Length = 188

 Score =  224 bits (571), Expect = 7e-75
 Identities = 85/184 (46%), Positives = 120/184 (65%), Gaps = 7/184 (3%)

Query: 2   IGVGKIKQYSNVLDKPLSKGKQEVSLSAFAFLFSELVQYNQTQVDNIAELERRLEDAGYA 61
           + V   +  S +L++ L++ K EVS+SAFA LFSE+VQY Q++V +++EL+ RL D G  
Sbjct: 1   MEVRFTRGKSAILERSLTRPKTEVSVSAFALLFSEMVQYCQSRVYSVSELQARLADMGQG 60

Query: 62  VGARVLELLCHRDKGNRRETRLLGILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISEK 121
           VGA +L++L  R+K  +RET++L IL F+   VWK LFGK AD LE+  + +  Y I EK
Sbjct: 61  VGASLLDVLVMREKNGKRETKVLNILLFIKVNVWKALFGKEADKLEQANDDDKTYYIIEK 120

Query: 122 ELLVNRFISIPKDMGTFNCGAFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTTILIK 181
           E L+N +IS+PK+  T NC AF  GIV  +L  +GFPA VT H+          TT++IK
Sbjct: 121 EPLINAYISVPKENSTLNCAAFTGGIVEAILTHSGFPAKVTVHWH-------KGTTLMIK 173

Query: 182 FAEE 185
           F E 
Sbjct: 174 FDES 177

>1sz7_A BET3 homolog, trafficking protein particle complex subunit 3; alpha-beta plait, trapp complex, palmitoylated, transport PR; HET: PLM; 1.55A {Homo sapiens} PDB: 2cfh_A* 2pwn_A* 3kxc_A* 1wc8_A* 2j3w_D* 2j3r_A* 2j3t_A* 1wc9_A* 2c0j_A* Length = 200

 Score =  179 bits (456), Expect = 3e-57
 Identities = 32/179 (17%), Positives = 68/179 (37%), Gaps = 6/179 (3%)

Query: 9   QYSNVLDKPLSKGKQE--VSLSAFAFLFSELVQYNQTQVDNIAELERRLEDAGYAVGARV 66
            + +   +  ++G +   +S   F   +  LV       +N  ++ ++L+  G+ +G R+
Sbjct: 5   HHHHGSSRQANRGTESKKMSSELFTLTYGALVTQLCKDYENDEDVNKQLDKMGFNIGVRL 64

Query: 67  LELLCHRDKGNRRETRLLGILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISEKELLVN 126
           +E    R     R          +    +K+  G            ++  +I E   LV+
Sbjct: 65  IEDFLARSNV-GRCHDFRETADVIAKVAFKMYLGITPSITNWSPAGDEFSLILENNPLVD 123

Query: 127 RFISIPKDMGTFNCGAFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTTILIKFAEE 185
            F+ +P +  +      + G++RG L+       V A FV    +    T I ++F   
Sbjct: 124 -FVELPDNHSSLIYSNLLCGVLRGALEMVQMA--VEAKFVQDTLKGDGVTEIRMRFIRR 179

>2bjn_A TPC6, trafficking protein particle complex subunit 6B; trapp complex, tethering, transport protein; 1.7A {Homo sapiens} PDB: 3kxc_C* 2cfh_C* Length = 160

 Score =  171 bits (435), Expect = 1e-54
 Identities = 36/167 (21%), Positives = 64/167 (38%), Gaps = 16/167 (9%)

Query: 24  EVSLSAFAFLFSELVQYNQTQVDNI----AELERRLEDAGYAVGARVLELLCHRDKGNRR 79
               + F  L +E+V       +           +LE+ G+ VG  ++E      K   R
Sbjct: 3   MADEALFLLLHNEMVSGVYKSAEQGEVENGRCITKLENMGFRVGQGLIERFT---KDTAR 59

Query: 80  ETRLLGILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISEKELLVNRFISIPKDMGTFN 139
               L I+ F+    W  +F K  D+L   T H+  Y++ + +  +   +S  K      
Sbjct: 60  FKDELDIMKFICKDFWTTVFKKQIDNLR--TNHQGIYVLQDNKFRLLTQMSAGKQYLEHA 117

Query: 140 CG--AFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTTILIKFAE 184
               AF  G++RG L + G  ++VTA    +     P     +   +
Sbjct: 118 SKYLAFTCGLIRGGLSNLGIKSIVTAEVSSM-----PACKFQVMIQK 159

>2c0j_B R32611_2; palmitate; HET: PLM; 2.20A {Homo sapiens} PDB: 2j3t_B* Length = 160

 Score =  158 bits (401), Expect = 2e-49
 Identities = 36/168 (21%), Positives = 59/168 (35%), Gaps = 17/168 (10%)

Query: 24  EVSLSAFAFLFSELVQYNQTQVDNIAELER-----RLEDAGYAVGARVLELLCHRDKGNR 78
                 F FL +E+V        +     +      LE  G+ VG  + E L        
Sbjct: 2   MADTVLFEFLHTEMVAELWAHDPDPGPGGQKMSLSVLEGMGFRVGQALGERLPRE---TL 58

Query: 79  RETRLLGILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISEKELLVNRFISIPKDM--G 136
                L +L F+   +W  +F K  DSL   T H+  Y++ +    +   ++        
Sbjct: 59  AFREELDVLKFLCKDLWVAVFQKQMDSLR--TNHQGTYVLQDNSFPLLLPMASGLQYLEE 116

Query: 137 TFNCGAFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTTILIKFAE 184
                AF  G++RG L + G  +VVTA          P     +   +
Sbjct: 117 APKFLAFTCGLLRGALYTLGIESVVTASV-----AALPVCKFQVVIPK 159

>3cue_B Transport protein particle 31 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae} Length = 283

 Score =  160 bits (405), Expect = 1e-48
 Identities = 51/170 (30%), Positives = 75/170 (44%), Gaps = 5/170 (2%)

Query: 16  KPLSKGKQEVSLSAFAFLFSELVQYNQTQVDNIAELERRLEDAGYAVGARVLELLCHRDK 75
            P S  +    LS            N   +   +               +   L  +  K
Sbjct: 109 SPSSLPRASAFLSQNESSSKLSNASNSPGMLANSSTATSASANERLQEKQTESLSNYITK 168

Query: 76  GNRRETRLLGILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISEKELLVNRFISIPKDM 135
             RR+ ++L IL F+H T+W  LF  V+D L K +E ++EYMI +    + +FI      
Sbjct: 169 MRRRDLKILDILQFIHGTLWSYLFNHVSDDLVKSSERDNEYMIVDNFPTLTQFIPGE--- 225

Query: 136 GTFNCGAFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTTILIKFAEE 185
              +C  FV GI++G L +AGFP  VTAH +P  G    RT  LI+F  +
Sbjct: 226 -NVSCEYFVCGIIKGFLFNAGFPCGVTAHRMPQGG-HSQRTVYLIQFDRQ 273

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 43.3 bits (101), Expect = 4e-05
 Identities = 38/241 (15%), Positives = 72/241 (29%), Gaps = 68/241 (28%)

Query: 1   MIGVGK-------IKQYSNVLDKP-----LSKGKQ---EVSLSAFAFLFSELVQYNQTQV 45
           ++G GK          Y            L+       E  L     L  ++     ++ 
Sbjct: 158 VLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRS 217

Query: 46  DNIAELERRLEDAGYAVGARVLELLCHRDKGNRRETRLLGILSFV-HSTVW-------KV 97
           D+ + ++ R+      + A +  LL  +   N     LL +L  V ++  W       K+
Sbjct: 218 DHSSNIKLRIHS----IQAELRRLLKSKPYEN----CLL-VLLNVQNAKAWNAFNLSCKI 268

Query: 98  LF----GKVADSLEKGT-------EHEDEYMISEKELLVNRFISI-----PKDMGTFNCG 141
           L      +V D L   T        H       E + L+ +++       P+++      
Sbjct: 269 LLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREV----LT 324

Query: 142 AFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTTILIKFAEEQKYPSIFLTSLPCLNP 201
                           P  ++   +    +    T    K     K  +I  +SL  L P
Sbjct: 325 --------------TNPRRLS--IIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEP 368

Query: 202 P 202
            
Sbjct: 369 A 369

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 40.6 bits (94), Expect = 3e-04
 Identities = 20/87 (22%), Positives = 30/87 (34%), Gaps = 10/87 (11%)

Query: 51  LERRLEDAGYAVGAR--VLELLCH--------RDKGNRRETRLLGILSFVHSTVWKVLFG 100
           LE+++     A  A   +L  L           D   + E  +  IL F+      ++  
Sbjct: 503 LEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICS 562

Query: 101 KVADSLEKGTEHEDEYMISEKELLVNR 127
           K  D L      EDE +  E    V R
Sbjct: 563 KYTDLLRIALMAEDEAIFEEAHKQVQR 589

>3cue_D Transport protein particle 22 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae} Length = 193

 Score = 38.4 bits (89), Expect = 8e-04
 Identities = 31/193 (16%), Positives = 74/193 (38%), Gaps = 8/193 (4%)

Query: 1   MIGVGKIKQYSNVLDKPLSKGKQEVSLSAFAFLFSELV-QYNQTQVDNIAELERRLEDAG 59
           M+   + +    + ++      ++++   F   +  +V Q  Q    +  ++   L   G
Sbjct: 1   MVSTTQSRSLKAMGEEIWKNKTEKINTELFTLTYGSIVAQLCQDYERDFNKVNDHLYSMG 60

Query: 60  YAVGARVLELLCHRDKGNRRETRLLGILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMIS 119
           Y +G R++E    R    R E  L+     +    +K+      + +   + ++D + + 
Sbjct: 61  YNIGCRLIEDFLARTALPRCEN-LVKTSEVLSKCAFKIFLNITPN-ITNWSHNKDTFSLI 118

Query: 120 EKELLVNRFISIPKD-MGTFNCGAFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTTI 178
             E  +  F+ +P D M +      + G+++G L+           FV    +   +T I
Sbjct: 119 LDENPLADFVELPMDAMKSLWYSNILCGVLKGSLEMVQLD--CDVWFVSDILRGDSQTEI 176

Query: 179 LIKFAE--EQKYP 189
            +K     + + P
Sbjct: 177 KVKLNRILKDEIP 189

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	237
2j3w_B	188	ZGC 92866, trafficking protein particle complex pr	100.0
3cue_B	283	Transport protein particle 31 kDa subunit; membran	100.0
2c0j_B	160	R32611_2; palmitate; HET: PLM; 2.20A {Homo sapiens	100.0
1sz7_A	200	BET3 homolog, trafficking protein particle complex	100.0
2bjn_A	160	TPC6, trafficking protein particle complex subunit	100.0
3cue_D	193	Transport protein particle 22 kDa subunit; membran	100.0
2oso_A	163	Hypothetical protein MJ1460; structural genomics,	95.85
3tfg_A	189	ALR2278 protein; heme-based sensor domain, GAS bin	82.22

>2j3w_B ZGC 92866, trafficking protein particle complex protein 2; multisubunit tethering factor, trapp, palmitate, transport, lipoprotein; HET: PLM; 2.1A {Brachydanio rerio} SCOP: d.278.1.2 PDB: 2j3r_B*

Probab=100.00  E-value=2.2e-61  Score=414.05  Aligned_cols=185  Identities=46%  Similarity=0.762  Sum_probs=159.9

Q ss_pred             ccCCCCCCCccccccCccCcccccHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHhhhhhhHHHHHHhhhhcCCCCCccc
Q 026545            3 GVGKIKQYSNVLDKPLSKGKQEVSLSAFAFLFSELVQYNQTQVDNIAELERRLEDAGYAVGARVLELLCHRDKGNRRETR   82 (237)
Q Consensus         3 ~~~~~~~~~~i~~~~l~~~~~eVs~s~F~~L~~EiV~y~~~~~~~~~ev~~kLe~mGy~VG~RLiE~l~~r~k~~~R~~~   82 (237)
                      +++..+...+||||||+|++.+||+|+|+|||+|||+|++++.++++|++++|++|||+||.||+|++++|++..+||++
T Consensus         2 ~~~~~~~~~~i~~~~l~~~~~~Vs~s~f~ll~~EiV~~~~~~~~~~~ev~~~Le~mGy~IG~RLiE~~~~r~~~~~R~~d   81 (188)
T 2j3w_B            2 EVRFTRGKSAILERSLTRPKTEVSVSAFALLFSEMVQYCQSRVYSVSELQARLADMGQGVGASLLDVLVMREKNGKRETK   81 (188)
T ss_dssp             -------------------CCEEEHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCCS
T ss_pred             CcccCCCCCccccCccccchhHhhHHHHHHHHHHHHHHHHhhcCchHHHHHHHHHhhHHHhHHHHHHHHhhcCCCcccCC
Confidence            56777788899999999999999999999999999999999999999999999999999999999999999876699999


Q ss_pred             hHHHHHHHHHHHHHHhhcccccccccccCCCCeEEEEcCCcccccceecCCCCCCcchhhhhHHHHHHHhhhCCCCeEEE
Q 026545           83 LLGILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISEKELLVNRFISIPKDMGTFNCGAFVAGIVRGVLDSAGFPAVVT  162 (237)
Q Consensus        83 ~ldilkFIck~~Wk~lFgKqaD~Lek~tn~~g~Y~L~D~~~~~~~~IS~p~e~~~l~y~af~cGIIrGaL~~lG~~a~Vt  162 (237)
                      ++|+++||||++|+++||||+|+|++.|||+|+|+|+|++|++++|||+|+++++++|++|+||||||||+++||+|+||
T Consensus        82 ~ld~l~fI~k~~Wk~lfgk~~d~L~~st~~~~~y~i~D~npl~~~fvs~p~~~~~l~y~~f~cGiIrGaL~~~g~~~~Vt  161 (188)
T 2j3w_B           82 VLNILLFIKVNVWKALFGKEADKLEQANDDDKTYYIIEKEPLINAYISVPKENSTLNCAAFTGGIVEAILTHSGFPAKVT  161 (188)
T ss_dssp             HHHHHHHHHTHHHHHHHSSCCSEEEEETTEEEEEEEEESSCGGGGTCSSCCSSCCSHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             HHHHHHHHHHHHHHHHhCCCccccccccCCCCEEEEEcCCcceeeeeecCccccCchhHHHHHHHHHHHHHHCCCceEEE
Confidence            99999999999999999999999975599999999999999999999999999999999999999999999999999999


Q ss_pred             EEEccCCCCCCCceEEEEEeccccccCccccc
Q 026545          163 AHFVPVEGQQRPRTTILIKFAEEQKYPSIFLT  194 (237)
Q Consensus       163 a~~~~~~~~~~p~t~F~IKf~~~v~~~e~~~~  194 (237)
                      ||+       .|+|+|+|||+++|++||..++
T Consensus       162 a~~-------~~~t~f~Ikf~~~v~~re~~~~  186 (188)
T 2j3w_B          162 VHW-------HKGTTLMIKFDESVIARDKALD  186 (188)
T ss_dssp             EEE-------SSSEEEEEEECHHHHHHHHHTC
T ss_pred             EEe-------CCCEEEEEEecHHHHHHHHhhc
Confidence            999       3699999999999999998875

>3cue_B Transport protein particle 31 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=9.6e-54  Score=384.64  Aligned_cols=178  Identities=38%  Similarity=0.626  Sum_probs=149.5

Q ss_pred             CCccccccCccCcccccHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHhhhhhhHHHHHHhhhhcC--------------
Q 026545           10 YSNVLDKPLSKGKQEVSLSAFAFLFSELVQYNQTQVDNIAELERRLEDAGYAVGARVLELLCHRDK--------------   75 (237)
Q Consensus        10 ~~~i~~~~l~~~~~eVs~s~F~~L~~EiV~y~~~~~~~~~ev~~kLe~mGy~VG~RLiE~l~~r~k--------------   75 (237)
                      +.+||||+|.+.+.+||+|+|+|||+|||+|+++++++++|++++|+.|||+||.||+|++.+|++              
T Consensus        42 ~~~i~~~~l~~~~~~Vs~s~fafLf~EmV~~~~~~~~~~~e~e~rLe~mGy~IG~RLlE~l~~R~~~~~~~~~~~~~~~~  121 (283)
T 3cue_B           42 PSRIYSESLLFKRQEASLSAMAFLFQEMISQLHRTCKTAGDFETKLSDYGHNIGIRLLELLNFRASVSPSSLPRASAFLS  121 (283)
T ss_dssp             -------------CEEEHHHHHHHHHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHCC------------------
T ss_pred             CCcccccccccCcchhhHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHhhhhhhHHHHHHHHhhcccCcccccccccccc
Confidence            579999999999999999999999999999999999999999999999999999999999998864              


Q ss_pred             -----------------------------------------------CCCCccchHHHHHHHHHHHHHHhhccccccccc
Q 026545           76 -----------------------------------------------GNRRETRLLGILSFVHSTVWKVLFGKVADSLEK  108 (237)
Q Consensus        76 -----------------------------------------------~~~R~~~~ldilkFIck~~Wk~lFgKqaD~Lek  108 (237)
                                                                     +++||++++|+++||||++|+++||||+|+||+
T Consensus       122 s~~ss~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~la~r~t~~~~R~~d~ldilkFIcK~~Wk~lFgKqaD~Lek  201 (283)
T 3cue_B          122 QNESSSKLSNASNSPGMLANSSTATSASANERLQEKQTESLSNYITKMRRRDLKILDILQFIHGTLWSYLFNHVSDDLVK  201 (283)
T ss_dssp             -------------------------------------------CCCCCSSSCCCHHHHHHHHHHHHHHHTTSSCCSEEEE
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHhCCCcchhcc
Confidence                                                           258999999999999999999999999999985


Q ss_pred             ccCCCCeEEEEcCCcccccceecCCCCCCcchhhhhHHHHHHHhhhCCCCeEEEEEEccCCCCCCCceEEEEEecccccc
Q 026545          109 GTEHEDEYMISEKELLVNRFISIPKDMGTFNCGAFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTTILIKFAEEQKY  188 (237)
Q Consensus       109 ~tn~~g~Y~L~D~~~~~~~~IS~p~e~~~l~y~af~cGIIrGaL~~lG~~a~Vta~~~~~~~~~~p~t~F~IKf~~~v~~  188 (237)
                      ++++.|+|||+|+++++++|++++    +++|++|+||||||||+++||+|+||||+.+... ..++|+|+|||+++|++
T Consensus       202 tn~~~geYvL~Dn~~pLt~fVs~~----~L~y~af~cGIIRGAL~~lGf~a~VTA~~~p~~~-~~~~T~~~IkF~~~v~~  276 (283)
T 3cue_B          202 SSERDNEYMIVDNFPTLTQFIPGE----NVSCEYFVCGIIKGFLFNAGFPCGVTAHRMPQGG-HSQRTVYLIQFDRQVLD  276 (283)
T ss_dssp             CSSCSSCEEEEESSCSSSCSSCTT----CCHHHHHHHHHHHHHHHHHTSCCCCEEECCCCSS-CTTCEEEECCCCHHHHH
T ss_pred             ccCCCCEEEEEeCchHHHhhhccC----CcchhhhHHHHHHHHHHhCCCceEEEEEEccccc-CCCceEEEEEecHHHHh
Confidence            556779999999999999999973    6899999999999999999999999999876442 33699999999999999


Q ss_pred             Cccc
Q 026545          189 PSIF  192 (237)
Q Consensus       189 ~e~~  192 (237)
                      ||..
T Consensus       277 Re~~  280 (283)
T 3cue_B          277 REGL  280 (283)
T ss_dssp             HHHH
T ss_pred             hhhh
Confidence            9875

>2c0j_B R32611_2; palmitate; HET: PLM; 2.20A {Homo sapiens} PDB: 2j3t_B*

Probab=100.00  E-value=2.7e-52  Score=349.52  Aligned_cols=150  Identities=25%  Similarity=0.329  Sum_probs=133.9

Q ss_pred             ccHHHHHHHHHHHHHHHHhhcCC-----hHHHHHHHHHhhhhhhHHHHHHhhhhcCCCCCccchHHHHHHHHHHHHHHhh
Q 026545           25 VSLSAFAFLFSELVQYNQTQVDN-----IAELERRLEDAGYAVGARVLELLCHRDKGNRRETRLLGILSFVHSTVWKVLF   99 (237)
Q Consensus        25 Vs~s~F~~L~~EiV~y~~~~~~~-----~~ev~~kLe~mGy~VG~RLiE~l~~r~k~~~R~~~~ldilkFIck~~Wk~lF   99 (237)
                      ||+++|+|||+|||+|++++.++     .++++++||+|||+||.||+|+++ |  +.+||++++|+++||||++|+++|
T Consensus         3 ~s~s~f~~l~~elV~~~~~~~~~~~~~~~~~v~~~Le~mGy~IG~RLiE~~~-r--~~~r~~d~ld~l~fI~k~~Wk~~f   79 (160)
T 2c0j_B            3 ADTVLFEFLHTEMVAELWAHDPDPGPGGQKMSLSVLEGMGFRVGQALGERLP-R--ETLAFREELDVLKFLCKDLWVAVF   79 (160)
T ss_dssp             CCHHHHHHHHHHHHHHTC-----------CHHHHHHHHHHHHHHHHHHHHSC-G--GGGTTCCHHHHHHHHHTHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHhHHHhHHHHHHHh-h--ccCccCCHHHHHHHHHHHHHHHHh
Confidence            79999999999999999999774     467799999999999999999999 5  579999999999999999999999


Q ss_pred             cccccccccccCCCCeEEEEcCCcccccceecCCCCC--CcchhhhhHHHHHHHhhhCCCCeEEEEEEccCCCCCCCceE
Q 026545          100 GKVADSLEKGTEHEDEYMISEKELLVNRFISIPKDMG--TFNCGAFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTT  177 (237)
Q Consensus       100 gKqaD~Lek~tn~~g~Y~L~D~~~~~~~~IS~p~e~~--~l~y~af~cGIIrGaL~~lG~~a~Vta~~~~~~~~~~p~t~  177 (237)
                      |||+|+|  +|||+|+|+|+|++|+|++|||+|+++.  .++|++|+||||||||+++||+|+||||++     +.|+|+
T Consensus        80 gk~~d~L--~t~~~~~y~l~dn~~~l~~~vs~p~~~~~~~l~y~~f~cGiIrGaL~~lg~~~~Vta~~~-----~~p~~~  152 (160)
T 2c0j_B           80 QKQMDSL--RTNHQGTYVLQDNSFPLLLPMASGLQYLEEAPKFLAFTCGLLRGALYTLGIESVVTASVA-----ALPVCK  152 (160)
T ss_dssp             SSCCSEE--EECSSSEEEEEETTCGGGC----CGGGTTTGGGGTHHHHHHHHHHHHHTTCCCEEEEEES-----STTCEE
T ss_pred             CCcCccc--eeCCCCEEEEECCCCcHHHHcCCCHHHhhhcchhHHHHHHHHHHHHHHCCCceEEEEeec-----CCCceE
Confidence            9999999  5999999999999999999999999988  789999999999999999999999999996     678999


Q ss_pred             EEEEecc
Q 026545          178 ILIKFAE  184 (237)
Q Consensus       178 F~IKf~~  184 (237)
                      |+|||.+
T Consensus       153 f~i~~~~  159 (160)
T 2c0j_B          153 FQVVIPK  159 (160)
T ss_dssp             EEEECCC
T ss_pred             EEEEeec
Confidence            9999976

>1sz7_A BET3 homolog, trafficking protein particle complex subunit 3; alpha-beta plait, trapp complex, palmitoylated, transport PR; HET: PLM; 1.55A {Homo sapiens} PDB: 2cfh_A* 2pwn_A* 3kxc_A* 1wc8_A* 2j3w_D* 2j3r_A* 2j3t_A* 1wc9_A* 2c0j_A*

Probab=100.00  E-value=1.2e-51  Score=356.62  Aligned_cols=163  Identities=20%  Similarity=0.366  Sum_probs=151.1

Q ss_pred             CcccccHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHhhhhhhHHHHHHhhhhcCCCCCccchHHHHHHHHHHHHHHhhc
Q 026545           21 GKQEVSLSAFAFLFSELVQYNQTQVDNIAELERRLEDAGYAVGARVLELLCHRDKGNRRETRLLGILSFVHSTVWKVLFG  100 (237)
Q Consensus        21 ~~~eVs~s~F~~L~~EiV~y~~~~~~~~~ev~~kLe~mGy~VG~RLiE~l~~r~k~~~R~~~~ldilkFIck~~Wk~lFg  100 (237)
                      ...+||+|+|+|||+|||+|++++++++++++++|++|||+||.||+|++++|+ ..+||++++++++||||++|+++||
T Consensus        19 ~~~eVs~s~f~lly~eiV~~~~~~~~~~~ev~~rLe~mGy~IG~RLiE~~~~r~-~~~R~~d~le~l~fI~k~~Wk~lFg   97 (200)
T 1sz7_A           19 ESKKMSSELFTLTYGALVTQLCKDYENDEDVNKQLDKMGFNIGVRLIEDFLARS-NVGRCHDFRETADVIAKVAFKMYLG   97 (200)
T ss_dssp             ---CCCSHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHHHHS-SCCSCCCHHHHHHHHHHTHHHHHHS
T ss_pred             ccchhcHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhCHHHhHHHHHHHHhcc-CCCccCCHHHHHHHHHHHHHHHHhC
Confidence            358999999999999999999999999999999999999999999999999997 5799999999999999999999999


Q ss_pred             ccccccccccCCCCeEEE-EcCCcccccceecCCCCCCcchhhhhHHHHHHHhhhCCCCeEEEEEEccCCCCCCCceEEE
Q 026545          101 KVADSLEKGTEHEDEYMI-SEKELLVNRFISIPKDMGTFNCGAFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTTIL  179 (237)
Q Consensus       101 KqaD~Lek~tn~~g~Y~L-~D~~~~~~~~IS~p~e~~~l~y~af~cGIIrGaL~~lG~~a~Vta~~~~~~~~~~p~t~F~  179 (237)
                      ||+|+|+ +||++|+|+| +|++|+.. |+++|++++.++|++|+||||||||+++||+  ||||++++++++.++|+|+
T Consensus        98 k~ad~L~-~t~~~~~Y~L~~D~nPL~~-fvslP~~~~~l~y~~f~cGIIrGaL~~lg~~--Vta~~~~d~l~g~~~t~~~  173 (200)
T 1sz7_A           98 ITPSITN-WSPAGDEFSLILENNPLVD-FVELPDNHSSLIYSNLLCGVLRGALEMVQMA--VEAKFVQDTLKGDGVTEIR  173 (200)
T ss_dssp             CCCEEEC-CCTTSCEEEEEESSCTTCT-TCCCCGGGTTCCTTTHHHHHHHHHHHTTTEE--EEEEEEECGGGTCSSEEEE
T ss_pred             CCCccce-ecCCCCEEEEEECCcHHHH-hccCCccccCCchhhhHHHHHHHHHHhCCCE--EEEEEEecccCCCCCEEEE
Confidence            9999996 6999999999 89998755 9999999999999999999999999999999  8899999988888899999


Q ss_pred             EEecccccc
Q 026545          180 IKFAEEQKY  188 (237)
Q Consensus       180 IKf~~~v~~  188 (237)
                      |||.+.|.+
T Consensus       174 Ikf~~~v~~  182 (200)
T 1sz7_A          174 MRFIRRIED  182 (200)
T ss_dssp             EEEEEEC--
T ss_pred             EEEhhhhhh
Confidence            999998755

>2bjn_A TPC6, trafficking protein particle complex subunit 6B; trapp complex, tethering, transport protein; 1.7A {Homo sapiens} PDB: 3kxc_C* 2cfh_C*

Probab=100.00  E-value=4.2e-51  Score=342.15  Aligned_cols=151  Identities=23%  Similarity=0.389  Sum_probs=128.2

Q ss_pred             cccHHHHHHHHHHHHHHHHhhcCChH----HHHHHHHHhhhhhhHHHHHHhhhhcCCCCCccchHHHHHHHHHHHHHHhh
Q 026545           24 EVSLSAFAFLFSELVQYNQTQVDNIA----ELERRLEDAGYAVGARVLELLCHRDKGNRRETRLLGILSFVHSTVWKVLF   99 (237)
Q Consensus        24 eVs~s~F~~L~~EiV~y~~~~~~~~~----ev~~kLe~mGy~VG~RLiE~l~~r~k~~~R~~~~ldilkFIck~~Wk~lF   99 (237)
                      -||.++|+|||+|||+|++++.++.+    +++++|++|||+||.||+|+++ |  +.+||++++|+++||||++|+++|
T Consensus         3 m~s~~~f~~l~~ElV~~~~~~~~~~~~~~~~v~~~Le~mGy~iG~rLiE~~~-r--~~~r~~~~ld~lkfI~k~~Wk~~f   79 (160)
T 2bjn_A            3 MADEALFLLLHNEMVSGVYKSAEQGEVENGRCITKLENMGFRVGQGLIERFT-K--DTARFKDELDIMKFICKDFWTTVF   79 (160)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTCCTTTTTTTHHHHHHHHHHHHHHHHHHTTC------------CHHHHHHHHTHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHhhhHhhHHHHHHHH-h--ccCccCCHHHHHHHHHHHHHHHHh
Confidence            58999999999999999999987654    6899999999999999999999 5  479999999999999999999999


Q ss_pred             cccccccccccCCCCeEEEEcCCcccccceecCCCCC--CcchhhhhHHHHHHHhhhCCCCeEEEEEEccCCCCCCCceE
Q 026545          100 GKVADSLEKGTEHEDEYMISEKELLVNRFISIPKDMG--TFNCGAFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTT  177 (237)
Q Consensus       100 gKqaD~Lek~tn~~g~Y~L~D~~~~~~~~IS~p~e~~--~l~y~af~cGIIrGaL~~lG~~a~Vta~~~~~~~~~~p~t~  177 (237)
                      |||+|+|  +|||+|+|+|+|++|+|++|||+|+++.  .++|++|+||||||||+++||+|+||||+.     +.|.|+
T Consensus        80 gk~~d~L--~t~~~~~y~l~d~~~~~~~~vs~p~~~~~~~l~y~~f~cGiIrGaL~~~g~~~~Vta~~~-----~~p~~~  152 (160)
T 2bjn_A           80 KKQIDNL--RTNHQGIYVLQDNKFRLLTQMSAGKQYLEHASKYLAFTCGLIRGGLSNLGIKSIVTAEVS-----SMPACK  152 (160)
T ss_dssp             SSCCSEE--EEEETTEEEEEESSCGGGTTC-------CTTGGGTHHHHHHHHHHHHHTTCCEEEEEEES-----STTCEE
T ss_pred             CCCCccc--ccCCCCEEEEEcCCchHHhhcCCCHHHHHhcchhHHHHHHHHHHHHHHCCCceEEEEEec-----CCCceE
Confidence            9999999  6999999999999999999999999884  789999999999999999999999999996     788999


Q ss_pred             EEEEecc
Q 026545          178 ILIKFAE  184 (237)
Q Consensus       178 F~IKf~~  184 (237)
                      |+|++.+
T Consensus       153 F~i~~~~  159 (160)
T 2bjn_A          153 FQVMIQK  159 (160)
T ss_dssp             EEEEEC-
T ss_pred             EEEEecc
Confidence            9999976

>3cue_D Transport protein particle 22 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.7e-50  Score=346.52  Aligned_cols=163  Identities=17%  Similarity=0.325  Sum_probs=150.6

Q ss_pred             CcccccHHHHHHHHHHHHH-HHHhhcCChHHHHHHHHHhhhhhhHHHHHHhhhhcCCCCCccchHHHHHHHHHHHHHHhh
Q 026545           21 GKQEVSLSAFAFLFSELVQ-YNQTQVDNIAELERRLEDAGYAVGARVLELLCHRDKGNRRETRLLGILSFVHSTVWKVLF   99 (237)
Q Consensus        21 ~~~eVs~s~F~~L~~EiV~-y~~~~~~~~~ev~~kLe~mGy~VG~RLiE~l~~r~k~~~R~~~~ldilkFIck~~Wk~lF   99 (237)
                      ...+||+|+|+|||+|||+ |+++..++.++++++|++|||+||.||+|++++|+ +.+||++++++++||||++|+++|
T Consensus        21 ~~~~Vs~s~f~ll~~elV~q~~~~~~~~~~ev~~rLe~mGy~IG~RLiE~~~~r~-~~~R~~~~le~l~fI~k~~Wk~lf   99 (193)
T 3cue_D           21 KTEKINTELFTLTYGSIVAQLCQDYERDFNKVNDHLYSMGYNIGCRLIEDFLART-ALPRCENLVKTSEVLSKCAFKIFL   99 (193)
T ss_dssp             SSCEEEHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHT-CCCCCSSHHHHHHHHHHHHHHHHS
T ss_pred             chhhccHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHhCHHHHHHHHHHHHhcc-CCCccCCHHHHHHHHHHHHHHHHh
Confidence            3589999999999999999 56666666999999999999999999999999997 589999999999999999999999


Q ss_pred             cccccccccccCCCCeEEE-EcCCcccccceecCCCC-CCcchhhhhHHHHHHHhhhCCCCeEEEEEEccCCCCCCCceE
Q 026545          100 GKVADSLEKGTEHEDEYMI-SEKELLVNRFISIPKDM-GTFNCGAFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTT  177 (237)
Q Consensus       100 gKqaD~Lek~tn~~g~Y~L-~D~~~~~~~~IS~p~e~-~~l~y~af~cGIIrGaL~~lG~~a~Vta~~~~~~~~~~p~t~  177 (237)
                      |||+|+|+ +|||+|+|+| +|++|+.. |+++|+++ ..++|++|+||||||||+++||  .||||+++++++++++|+
T Consensus       100 gk~~d~L~-~t~~~~~y~L~~d~nPl~~-fv~lP~~~~~~l~y~~f~cGIIrGaL~~~g~--~Vta~~~~d~l~g~~~t~  175 (193)
T 3cue_D          100 NITPNITN-WSHNKDTFSLILDENPLAD-FVELPMDAMKSLWYSNILCGVLKGSLEMVQL--DCDVWFVSDILRGDSQTE  175 (193)
T ss_dssp             SCCCCCBC-CCTTSCCCBCCBSCCGGGS-SCCCCTTTTTSCCTTHHHHHHHHHHHHHTTC--CCEEEECCCSSSSSSCBC
T ss_pred             CCCCccce-ecCCCCEEEEEECCchhhh-heeCcHhHHhCcchhhhHHHHHHHHHHhCCC--EEEEEEeeccCCCCCCEE
Confidence            99999996 6999999999 89998755 99999998 7899999999999999999999  678889999988888999


Q ss_pred             EEEEecccccc
Q 026545          178 ILIKFAEEQKY  188 (237)
Q Consensus       178 F~IKf~~~v~~  188 (237)
                      |+|||+++|.+
T Consensus       176 ~~Ikf~~~v~d  186 (193)
T 3cue_D          176 IKVKLNRILKD  186 (193)
T ss_dssp             EEEECCCCCSC
T ss_pred             EEEEEhhhhhc
Confidence            99999998754

>2oso_A Hypothetical protein MJ1460; structural genomics, joint center for structural genomics; HET: MSE; 1.90A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} SCOP: d.278.1.3 PDB: 2osd_A*

Probab=95.85  E-value=0.011  Score=48.58  Aligned_cols=134  Identities=16%  Similarity=0.181  Sum_probs=78.5

Q ss_pred             cccccHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHhhhhhhHHHHHHhhhhcCCCCCccchHHHHHHHHHHHHHH-hhc
Q 026545           22 KQEVSLSAFAFLFSELVQYNQTQVDNIAELERRLEDAGYAVGARVLELLCHRDKGNRRETRLLGILSFVHSTVWKV-LFG  100 (237)
Q Consensus        22 ~~eVs~s~F~~L~~EiV~y~~~~~~~~~ev~~kLe~mGy~VG~RLiE~l~~r~k~~~R~~~~ldilkFIck~~Wk~-lFg  100 (237)
                      ...|..+.|.+|+..+-..+.....+..     |.+.||..|..+.+.+.             +.+    +++|+. =+|
T Consensus        25 ~~~vp~~~f~~l~~~l~~~l~~~G~~~~-----L~~~G~~~G~~l~~~~~-------------~~l----~~~~~~~G~G   82 (163)
T 2oso_A           25 SKKIPMPYFGLFALVIFDKVKELGSETS-----LYEIGEEFGKMLSPKNI-------------EEL----KKIFKLMNFG   82 (163)
T ss_dssp             SCCCCHHHHHHHHHHHHHHHC--CCCCC-----HHHHHHHHHHHHCCSSH-------------HHH----HHHHHHHTCC
T ss_pred             cCcccHHHHHHHHHHHHHHHHhcCHHHH-----HHHHHHHHHHHHHHHHH-------------HHH----HHHHHHcCce
Confidence            3789999999999877665543222211     99999999998865422             222    466665 223


Q ss_pred             c-cccccccccCCCCeEEEEcCCcccccceecCCCCCCcchhhhhHHHHHHHhhhCCCCeEEEEEEccCCCCCCCceEEE
Q 026545          101 K-VADSLEKGTEHEDEYMISEKELLVNRFISIPKDMGTFNCGAFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTTIL  179 (237)
Q Consensus       101 K-qaD~Lek~tn~~g~Y~L~D~~~~~~~~IS~p~e~~~l~y~af~cGIIrGaL~~lG~~a~Vta~~~~~~~~~~p~t~F~  179 (237)
                      . .++..+ ....++.+.|.-.+...-.-      ..+-..++|.+|++.|+++.+ +.-.|.+.=+.....+.+.|.|.
T Consensus        83 ~l~i~~~~-~~~~~~~~~i~v~~s~e~~~------~~~~pvC~~~~G~~aG~~s~~-~g~~~~~~E~~C~a~G~~~C~F~  154 (163)
T 2oso_A           83 DLEIDENK-ILLKNPPYKIKLSNPPYQWV------SKEEPIHDFIAGILAGCLEEI-FYYYFVVNEVECVSQGKDKCVFE  154 (163)
T ss_dssp             EEECCHHH-HHHSCSCEEEEEESCSCTTC------CCSSCCCHHHHHHHHHHHHHH-HCSEEEEEEEECGGGTCSSEEEE
T ss_pred             EEEEEecc-ccccCCcEEEEEEeCceeec------CCCCceeHHHHHHHHHHHHHH-hCCCeEEEEeEeEcCCCCeEEEE
Confidence            2 111110 00133455554322221211      223467889999999999886 33444444555666688899999


Q ss_pred             EEeccc
Q 026545          180 IKFAEE  185 (237)
Q Consensus       180 IKf~~~  185 (237)
                      ++..++
T Consensus       155 ~~~~~~  160 (163)
T 2oso_A          155 VKEVDE  160 (163)
T ss_dssp             EEEEC-
T ss_pred             EEEHHH
Confidence            997664

>3tfg_A ALR2278 protein; heme-based sensor domain, GAS binding, signaling protein; HET: HEM; 1.90A {Nostoc SP} PDB: 3tfd_A* 3tfe_A* 3tff_A* 2o09_A* 2o0c_A* 2o0g_A* 3l6j_A* 3tf8_A* 3tf9_A* 3tfa_A*

Probab=82.22  E-value=2.1  Score=35.41  Aligned_cols=45  Identities=16%  Similarity=0.210  Sum_probs=32.7

Q ss_pred             hhhhhHHHHHHHhhhCCCCeEEEEEEccCCCCCCCceEEEEEecccc
Q 026545          140 CGAFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTTILIKFAEEQ  186 (237)
Q Consensus       140 y~af~cGIIrGaL~~lG~~a~Vta~~~~~~~~~~p~t~F~IKf~~~v  186 (237)
                      .+.|..|+|+|+-+..|-+.+|+  ..+....+...|+|.|++.+..
T Consensus       141 l~~~~~Gli~~~A~~f~~~v~i~--~~~~~~~~~~h~~f~i~~~~~~  185 (189)
T 3tfg_A          141 LAPMVLGLLHGLGKRFQTKVEVT--QTAFRETGEDHDIFSIKYEDSN  185 (189)
T ss_dssp             CHHHHHHHHHHHHHHTTCEEEEE--EEECTTTTSSSEEEEEEEEC--
T ss_pred             HHHHHHHHHHHHHHHhCCCeEEE--EEeccCCCCCeEEEEEEECCCC
Confidence            67899999999999865555554  5554444556899999998763

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	237
d2j3wb1	168	d.278.1.2 (B:21-188) TRAPPC5, similar to trafficki	3e-68
d1wc9a_	161	d.278.1.2 (A:) Trafficking protein particle comple	3e-48

>d2j3wb1 d.278.1.2 (B:21-188) TRAPPC5, similar to trafficking protein particle complex 5 {Zebrafish (Brachydanio rerio) [TaxId: 7955]} Length = 168

class: Alpha and beta proteins (a+b)
fold: Ligand-binding domain in the NO signalling and Golgi transport
superfamily: Ligand-binding domain in the NO signalling and Golgi transport
family: TRAPP components
domain: TRAPPC5, similar to trafficking protein particle complex 5
species: Zebrafish (Brachydanio rerio) [TaxId: 7955]

 Score =  205 bits (523), Expect = 3e-68
 Identities = 81/164 (49%), Positives = 109/164 (66%), Gaps = 7/164 (4%)

Query: 22  KQEVSLSAFAFLFSELVQYNQTQVDNIAELERRLEDAGYAVGARVLELLCHRDKGNRRET 81
           K EVS+SAFA LFSE+VQY Q++V +++EL+ RL D G  VGA +L++L  R+K  +RET
Sbjct: 1   KTEVSVSAFALLFSEMVQYCQSRVYSVSELQARLADMGQGVGASLLDVLVMREKNGKRET 60

Query: 82  RLLGILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISEKELLVNRFISIPKDMGTFNCG 141
           ++L IL F+   VWK LFGK AD LE+  + +  Y I EKE L+N +IS+PK+  T NC 
Sbjct: 61  KVLNILLFIKVNVWKALFGKEADKLEQANDDDKTYYIIEKEPLINAYISVPKENSTLNCA 120

Query: 142 AFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTTILIKFAEE 185
           AF  GIV  +L  +GFPA VT H+          TT++IKF E 
Sbjct: 121 AFTGGIVEAILTHSGFPAKVTVHW-------HKGTTLMIKFDES 157

>d1wc9a_ d.278.1.2 (A:) Trafficking protein particle complex subunit 3, Bet3 homolog {Mouse (Mus musculus) [TaxId: 10090]} Length = 161

class: Alpha and beta proteins (a+b)
fold: Ligand-binding domain in the NO signalling and Golgi transport
superfamily: Ligand-binding domain in the NO signalling and Golgi transport
family: TRAPP components
domain: Trafficking protein particle complex subunit 3, Bet3 homolog
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  154 bits (391), Expect = 3e-48
 Identities = 30/160 (18%), Positives = 60/160 (37%), Gaps = 4/160 (2%)

Query: 23  QEVSLSAFAFLFSELVQYNQTQVDNIAELERRLEDAGYAVGARVLELLCHRDKGNRRETR 82
           +++S   F   +  LV       +N  ++ ++L+  GY +G R++E    R     R   
Sbjct: 1   KKMSSELFTLTYGALVTQLCKDYENDEDVNKQLDRMGYNIGVRLIEDFLARS-NVGRCHD 59

Query: 83  LLGILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISEKELLVNRFISIPKDMGTFNCGA 142
                  +    +K+  G             DE+ +  +   +  F+ +P +        
Sbjct: 60  FRETADVIAKVAFKMYLGITPSITNWSPAG-DEFSLILENNPLVDFVELPDNHSALIYSN 118

Query: 143 FVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTTILIKF 182
            + G++RG L+       V A FV    +    T I ++F
Sbjct: 119 LLCGVLRGALEMVQMA--VEAKFVQDTLKGDGVTEIRMRF 156

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	237
d2j3wb1	168	TRAPPC5, similar to trafficking protein particle c	100.0
d1wc9a_	161	Trafficking protein particle complex subunit 3, Be	100.0
d2osoa1	152	Hypothetical protein MJ1460 {Methanococcus jannasc	95.3
d1u55a_	188	Methyl-accepting chemotaxis protein {Thermoanaerob	91.4

>d2j3wb1 d.278.1.2 (B:21-188) TRAPPC5, similar to trafficking protein particle complex 5 {Zebrafish (Brachydanio rerio) [TaxId: 7955]}

class: Alpha and beta proteins (a+b)
fold: Ligand-binding domain in the NO signalling and Golgi transport
superfamily: Ligand-binding domain in the NO signalling and Golgi transport
family: TRAPP components
domain: TRAPPC5, similar to trafficking protein particle complex 5
species: Zebrafish (Brachydanio rerio) [TaxId: 7955]

Probab=100.00  E-value=1.1e-57  Score=382.70  Aligned_cols=167  Identities=49%  Similarity=0.802  Sum_probs=160.6

Q ss_pred             cccccHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHhhhhhhHHHHHHhhhhcCCCCCccchHHHHHHHHHHHHHHhhcc
Q 026545           22 KQEVSLSAFAFLFSELVQYNQTQVDNIAELERRLEDAGYAVGARVLELLCHRDKGNRRETRLLGILSFVHSTVWKVLFGK  101 (237)
Q Consensus        22 ~~eVs~s~F~~L~~EiV~y~~~~~~~~~ev~~kLe~mGy~VG~RLiE~l~~r~k~~~R~~~~ldilkFIck~~Wk~lFgK  101 (237)
                      |++||+|+|+|||+|||+|+++++++++|++++|++|||+||.||+|++++|++..+||++++++++||||++|+++|||
T Consensus         1 k~~Vs~s~f~~L~~ElV~y~~~~~~~~~e~~~~Le~mG~~vG~rl~E~l~~r~~~~~R~~~~~~~l~fI~k~~W~~lfgk   80 (168)
T d2j3wb1           1 KTEVSVSAFALLFSEMVQYCQSRVYSVSELQARLADMGQGVGASLLDVLVMREKNGKRETKVLNILLFIKVNVWKALFGK   80 (168)
T ss_dssp             CCEEEHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCCSHHHHHHHHHTHHHHHHHSS
T ss_pred             CchhCHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHHcCc
Confidence            57999999999999999999999999999999999999999999999999999888999999999999999999999999


Q ss_pred             cccccccccCCCCeEEEEcCCcccccceecCCCCCCcchhhhhHHHHHHHhhhCCCCeEEEEEEccCCCCCCCceEEEEE
Q 026545          102 VADSLEKGTEHEDEYMISEKELLVNRFISIPKDMGTFNCGAFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTTILIK  181 (237)
Q Consensus       102 qaD~Lek~tn~~g~Y~L~D~~~~~~~~IS~p~e~~~l~y~af~cGIIrGaL~~lG~~a~Vta~~~~~~~~~~p~t~F~IK  181 (237)
                      |+|+|++.++|+|+|+|+|++|+|++|||+|+++++++|++|+||||||||+++||+|+||||+.       |+|+|+||
T Consensus        81 ~~d~L~~~~~~~~~y~I~d~~~~~~~~vs~p~~~~~l~y~~f~~GiIrGaL~~~g~~~~Vta~~~-------~~~~f~ik  153 (168)
T d2j3wb1          81 EADKLEQANDDDKTYYIIEKEPLINAYISVPKENSTLNCAAFTGGIVEAILTHSGFPAKVTVHWH-------KGTTLMIK  153 (168)
T ss_dssp             CCSEEEEETTEEEEEEEEESSCGGGGTCSSCCSSCCSHHHHHHHHHHHHHHHHTTCCEEEEEEES-------SSEEEEEE
T ss_pred             CcccccccCCCCceEEEEcCCchhhheeccCccccccchHHHHHHHHHHHHHHCCCceEEEEeeC-------CCeEEEEE
Confidence            99999766889999999999999999999999999999999999999999999999999999984       58999999


Q ss_pred             eccccccCcccccC
Q 026545          182 FAEEQKYPSIFLTS  195 (237)
Q Consensus       182 f~~~v~~~e~~~~~  195 (237)
                      |+++|++||.++.+
T Consensus       154 f~~~v~~Re~~l~~  167 (168)
T d2j3wb1         154 FDESVIARDKALDG  167 (168)
T ss_dssp             ECHHHHHHHHHTCC
T ss_pred             ccHHHHHHHHhhcc
Confidence            99999999988754

>d1wc9a_ d.278.1.2 (A:) Trafficking protein particle complex subunit 3, Bet3 homolog {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ligand-binding domain in the NO signalling and Golgi transport
superfamily: Ligand-binding domain in the NO signalling and Golgi transport
family: TRAPP components
domain: Trafficking protein particle complex subunit 3, Bet3 homolog
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=6.8e-49  Score=327.23  Aligned_cols=159  Identities=16%  Similarity=0.313  Sum_probs=146.1

Q ss_pred             ccccHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHhhhhhhHHHHHHhhhhcCCCCCccchHHHHHHHHHHHHHHhhccc
Q 026545           23 QEVSLSAFAFLFSELVQYNQTQVDNIAELERRLEDAGYAVGARVLELLCHRDKGNRRETRLLGILSFVHSTVWKVLFGKV  102 (237)
Q Consensus        23 ~eVs~s~F~~L~~EiV~y~~~~~~~~~ev~~kLe~mGy~VG~RLiE~l~~r~k~~~R~~~~ldilkFIck~~Wk~lFgKq  102 (237)
                      +|||+++|++||+|||+|+++++++.++++++|++|||+||.||+|++++|+ +.+||++++++++||||++|+++|||+
T Consensus         1 ~kv~~elfal~yg~iV~~~~~d~e~~~e~~~~Le~~G~~IG~RLiE~~~~r~-~~~R~~~~l~~l~fI~~~~wk~~fgk~   79 (161)
T d1wc9a_           1 KKMSSELFTLTYGALVTQLCKDYENDEDVNKQLDRMGYNIGVRLIEDFLARS-NVGRCHDFRETADVIAKVAFKMYLGIT   79 (161)
T ss_dssp             CCCCSHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHTS-SCCSCCCHHHHHHHHHHTHHHHHHSCC
T ss_pred             CcccHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhCcchhHHHHHHHHhhc-CCCccccHHHHHHHHHHHHHHHHcCCC
Confidence            4899999999999999999999999999999999999999999999999997 689999999999999999999999999


Q ss_pred             ccccccccCCCCe-EEEEcCCcccccceecCCCCCCcchhhhhHHHHHHHhhhCCCCeEEEEEEccCCCCCCCceEEEEE
Q 026545          103 ADSLEKGTEHEDE-YMISEKELLVNRFISIPKDMGTFNCGAFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTTILIK  181 (237)
Q Consensus       103 aD~Lek~tn~~g~-Y~L~D~~~~~~~~IS~p~e~~~l~y~af~cGIIrGaL~~lG~~a~Vta~~~~~~~~~~p~t~F~IK  181 (237)
                      +|+|  .++++|+ |+++++++++.+|+++|++++.++|++|+||||||||+++||+|+||  ++++..++++.|.+.||
T Consensus        80 ~d~l--~~~~~~~~~~~i~~~npl~~fv~lP~~~~~l~y~~f~cGiIrGaL~~~g~~~~V~--~~~d~l~gd~~~~i~v~  155 (161)
T d1wc9a_          80 PSIT--NWSPAGDEFSLILENNPLVDFVELPDNHSALIYSNLLCGVLRGALEMVQMAVEAK--FVQDTLKGDGVTEIRMR  155 (161)
T ss_dssp             CEEE--CCCTTSCEEEEEESCCGGGTTCCCCTTCTTCCTTTHHHHHHHHHHHTTTEEEEEE--EEECGGGTCSSEEEEEE
T ss_pred             cccc--eecCCCCeEEEEecCCCccceEEcCcccCCceehhhHHHHHHHHHHHCCCeEEEE--EEecccCCCCceEEEEE
Confidence            9999  5676664 66666666789999999999999999999999999999999999998  55567778899999999


Q ss_pred             ecccc
Q 026545          182 FAEEQ  186 (237)
Q Consensus       182 f~~~v  186 (237)
                      |.+.+
T Consensus       156 ~~~~~  160 (161)
T d1wc9a_         156 FIRRI  160 (161)
T ss_dssp             EEEEC
T ss_pred             Eeeec
Confidence            98764

>d2osoa1 d.278.1.3 (A:5-156) Hypothetical protein MJ1460 {Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a+b)
fold: Ligand-binding domain in the NO signalling and Golgi transport
superfamily: Ligand-binding domain in the NO signalling and Golgi transport
family: MJ1460-like
domain: Hypothetical protein MJ1460
species: Methanococcus jannaschii [TaxId: 2190]

Probab=95.30  E-value=0.0055  Score=47.99  Aligned_cols=133  Identities=16%  Similarity=0.122  Sum_probs=75.9

Q ss_pred             cCcccccHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHhhhhhhHHHHHHhhhhcCCCCCccchHHHHHHHHHHHHHHhh
Q 026545           20 KGKQEVSLSAFAFLFSELVQYNQTQVDNIAELERRLEDAGYAVGARVLELLCHRDKGNRRETRLLGILSFVHSTVWKVLF   99 (237)
Q Consensus        20 ~~~~eVs~s~F~~L~~EiV~y~~~~~~~~~ev~~kLe~mGy~VG~RLiE~l~~r~k~~~R~~~~ldilkFIck~~Wk~lF   99 (237)
                      +.+..+..+.|.++..+|..-+....     ...-|-..||++|+++.++.            .-++.+|..+.-|-.+-
T Consensus        18 ~~~~~ip~~~f~l~~~~l~d~l~~~~-----~~~iLY~aGk~lGr~~~~k~------------~eel~~ff~~~g~G~L~   80 (152)
T d2osoa1          18 KESKKIPMPYFGLFALVIFDKVKELG-----SETSLYEIGEEFGKMLSPKN------------IEELKKIFKLMNFGDLE   80 (152)
T ss_dssp             HHSCCCCHHHHHHHHHHHHHHHC--C-----CCCCHHHHHHHHHHHHCCSS------------HHHHHHHHHHHTCCEEE
T ss_pred             HHHhcCCHHHHHHHHHHHHHHhcccc-----hHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHcCCceEE
Confidence            34466899999999887765543322     22345566888888776543            34577777666664331


Q ss_pred             cccccccccccCCCCeEEEEcCCcccccceecCCCCCCcchhhhhHHHHHHHhhhCC-CCeEEEEEEccCCCCCCCceEE
Q 026545          100 GKVADSLEKGTEHEDEYMISEKELLVNRFISIPKDMGTFNCGAFVAGIVRGVLDSAG-FPAVVTAHFVPVEGQQRPRTTI  178 (237)
Q Consensus       100 gKqaD~Lek~tn~~g~Y~L~D~~~~~~~~IS~p~e~~~l~y~af~cGIIrGaL~~lG-~~a~Vta~~~~~~~~~~p~t~F  178 (237)
                      =...+-.    ...+.+.+.-.+++....      ..+-..++|.+|++.|+++.+- -+..|  .=+.....+.+.|.|
T Consensus        81 I~~~~~~----~~~~~~~~e~~~~~~~~g------~~~~pvC~~~~G~lag~~~~~~g~~~~v--~E~~C~a~G~~~C~F  148 (152)
T d2osoa1          81 IDENKIL----LKNPPYKIKLSNPPYQWV------SKEEPIHDFIAGILAGCLEEIFYYYFVV--NEVECVSQGKDKCVF  148 (152)
T ss_dssp             CCHHHHH----HSCSCEEEEEESCSCTTC------CCSSCCCHHHHHHHHHHHHHHHCSEEEE--EEEECGGGTCSSEEE
T ss_pred             EEecccc----cccceEEEEEccChhhhC------CCCCCcchhhHHHHHHHHHHHhCCceEE--EEeehhhCCCCceEE
Confidence            1111111    123444555445442211      1123456889999999998853 33333  233344457789999


Q ss_pred             EEE
Q 026545          179 LIK  181 (237)
Q Consensus       179 ~IK  181 (237)
                      .|+
T Consensus       149 ~v~  151 (152)
T d2osoa1         149 EVK  151 (152)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            986

>d1u55a_ d.278.1.1 (A:) Methyl-accepting chemotaxis protein {Thermoanaerobacter tengcongensis [TaxId: 119072]}

class: Alpha and beta proteins (a+b)
fold: Ligand-binding domain in the NO signalling and Golgi transport
superfamily: Ligand-binding domain in the NO signalling and Golgi transport
family: H-NOX domain
domain: Methyl-accepting chemotaxis protein
species: Thermoanaerobacter tengcongensis [TaxId: 119072]

Probab=91.40  E-value=0.91  Score=35.82  Aligned_cols=120  Identities=17%  Similarity=0.127  Sum_probs=68.8

Q ss_pred             HHHHHHHhhhhhhHHHHHHhhhhcCCCCCccchHHHHHHHHHHHHHHhhcccccccccccCCCCeEEEEcCCccccccee
Q 026545           51 LERRLEDAGYAVGARVLELLCHRDKGNRRETRLLGILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISEKELLVNRFIS  130 (237)
Q Consensus        51 v~~kLe~mGy~VG~RLiE~l~~r~k~~~R~~~~ldilkFIck~~Wk~lFgKqaD~Lek~tn~~g~Y~L~D~~~~~~~~IS  130 (237)
                      ...-|+..|...=.++.+.+...-+ ...+.++|.-|..|+..+=+.+=+-..-..+        +.-.+.+-..+.|-|
T Consensus        63 ~~~ll~~fG~~~~~~~~~~y~~~~~-g~~~~dFL~~ld~iH~~v~~~yp~~~~P~f~--------~~~~~~~~l~l~Y~S  133 (188)
T d1u55a_          63 VNEIWREVGRQNIKTFSEWFPSYFA-GRRLVNFLMMMDEVHLQLTKMIKGATPPRLI--------AKPVAKDAIEMEYVS  133 (188)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSGGGTT-TCCHHHHHHHHHHHHHHHHTTSTTCCCCBCC--------EEEEETTEEEEEEEE
T ss_pred             HHHHHHHHHHHHHHHHHHhhHHHhc-CCCHHHHHHhhhhHHHHHHHhCCCCCCCeEE--------EEECCCCEEEEEEEe
Confidence            4566777887655566664432222 3456777777777777653322121211110        111122222233444


Q ss_pred             cCCCCCCcchhhhhHHHHHHHhhhCCCCeEEEEEEccCCCCCCCceEEEEEecccc
Q 026545          131 IPKDMGTFNCGAFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTTILIKFAEEQ  186 (237)
Q Consensus       131 ~p~e~~~l~y~af~cGIIrGaL~~lG~~a~Vta~~~~~~~~~~p~t~F~IKf~~~v  186 (237)
                       +.     ..+.|+.|+|+|+-+..|-+.+|...- .....+.+.|.|+|+|+..+
T Consensus       134 -~R-----~l~~~~~Gli~g~A~~f~~~i~I~~~~-~~~~~~~~~~~~~i~f~n~~  182 (188)
T d1u55a_         134 -KR-----KMYDYFLGLIEGSSKFFKEEISVEEVE-RGEKDGFSRLKVRIKFKNPV  182 (188)
T ss_dssp             -TT-----CCHHHHHHHHHHHHHHHTCCEEEEEEE-EEEETTEEEEEEEEEESSCC
T ss_pred             -CC-----ChHHHHHHHHHHHHHHhCCceEEEEee-ccccCCccEEEEEEEEEchh
Confidence             11     356799999999999999988886321 12223456899999998754