Citrus Sinensis ID: 026549

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------
Protein Sequence
MCFKVVSRGYNFMLVCFFLARSNFLGTKFIVYDGQPPHAGAKMTRSRSTRLANLKQVSPRIPFGNYSVAHISYELNVLGSRGPRRMQCVMDSIPASAIESGGVAPTQTEFLFSNADSFPSIPFFRSKSNRSEKFLSGPLACQKDGALVLRNKAPRWHEQLQCWCLNFHGRVTVASVKNFQLVASPENGPAGLEHEKIILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFDTKIACE
Secondary Structure (PSIPRED)
ccccccccccccEEEEEEEEEccccccEEEEEccccccccccccccccccccccccccccccccccccEEEEEEEcccccccccEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEcccccccccccccEEEcccccEEEcccccEEEEccccccccccccccEEEEEEEEcccEEEEEccccccHHHHHHHHHHccccccccc
Secondary Structure Prediction (SSPRO)
ccccHcccccccEEEEccccEEcccccEEEEEccccccccccccccccccEEccccccccccccccEEEEEEEEEEccccccccEEEEEEccccccccccccccccccccccccccccccccccccccccccHccccccccccccEEEEEEcccEEEccccEEEEEEccEEEEcEccEEEEEEcccccccccccccccEEEEEEEccEEEEEEcccccHHHHHHHHHHHHHcccccc
Coil and Loop (DISEMBL)
MCFKVVSRGYNFMLVCFFLARsnflgtkfivydgqpphagakmtrsrSTRLanlkqvspripfgnysVAHISYELNvlgsrgprrmqcvmdsipasaiesggvaptqteflfsnadsfpsipffrsksnrsekflsgplacqkdgalvlrnkaprWHEQLQCWCLNFHGRVTVASVKNfqlvaspengpagleHEKIILQFGkvgkdlftmdyrypISAFQAFAICLSSfdtkiace
Flexible Loop (DISEMBL)
mcfkvvsrGYNFMLVCFFLARSNFLGTKFIVYDGQPPHAGAKMTRSRSTrlanlkqvspripfgnySVAHISYELNVLGSRGPRRMQCVMDSIPASAIESGGVAPTQTEFLFSNADSFPSIPFFRSKSNRSEKFLSGPLACQKDGALVLRNKAPRWHEQLQCWCLNFHGRVTVASVKNFQLVASPENGPAGLEHEKIILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFDTKIACE
Low Complexity Region (SEG)
MCFKVVSRGYNFMLVCFFLARSNFLGTKFIVYDGQPPHAGAKMTRSRSTRLANLKQVSPRIPFGNYSVAHISYELNVLGSRGPRRMQCVMDSIPASAIESGGVAPTQTEFLFSNADSFPSIPFFRSKSNRSEKFLSGPLACQKDGALVLRNKAPRWHEQLQCWCLNFHGRVTVASVKNFQLVASPENGPAGLEHEKIILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFDTKIACE
Disordered region (IsUnstruct)
*CFKVVSRGYNFMLVCFFLARSNFLGTKFIVYDG*********************QVSPRIPFGNYSVAHISYELNVLGSRGPRRMQCVMDSIPA*AI****VAPTQTEFLFSNADSFPSIPFF*********FLSGPLACQKDGALVLRNKAPRWHEQLQCWCLNFHGRVTVASVKNFQLVASPENGPAGLEHEKIILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFDTKI***
Disordered Region (DISOPRED)
****VVSRGYNFMLVCFFLARSNFLGTKFIVYDGQP*********************************HISYELNVLGSRGPRRMQCVMDSIP******************************************GPLACQKDGALVLRNKAPRWHEQLQCWCLNFHGRVTVASVKNFQLVASP****AGLEHEKIILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFDTKIACE
Disordered Region (DISEMBL)
MCFKVVSRGYNFMLVCFFLARSNFLGTKFIVYDGQPPH*********STRLANLKQVSPRIPFGNYSVAHISYELNVLGSRGPRRMQCVMDSIPASAIESGGVAPTQTEFLFSNADSFPSIPFFRSKSNRSEKFLSGPLACQKDGALVLRNKAPRWHEQLQCWCLNFHGRVTVASVKNFQLVASPENGPAGLEHEKIILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFDTKIACE
Disordered Region (DISPRO)
*********YNFMLVCFFLARSNFLGTKFIVYDGQPPHAGA******S*RLANLKQVSPRIPFGNYSVAHISYELNVLGSRGPRRMQCVMDSIPASAIESGGV***************************************KDGALVLRNKAPRWHEQLQCWCLNFHGRVTVASVKNFQLVASPENGPAGLEHEKIILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFDTKIAC*
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MCFKVVSRGYNFMLVCFFLARSNFLGTKFIVYDGQPPHAGAKMTRSRSTRLANLKQVSPRIPFGNYSVAHISYELNVLGSRGPRRMQCVMDSIPASAIESGGVAPTQTEFLFSNADSFPSIPFFRSKSNRSEKFLSGPLACQKDGALVLRNKAPRWHEQLQCWCLNFHGRVTVASVKNFQLVASPENGPAGLEHEKIILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFDTKIACE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	237	2.2.26 [Sep-21-2011]
Q8VY21	406	Tubby-like F-box protein	yes	no	0.966	0.564	0.772	1e-94
Q10LG8	403	Tubby-like F-box protein	no	no	0.911	0.535	0.741	4e-93
Q8H485	406	Tubby-like F-box protein	no	no	0.911	0.532	0.709	2e-88
Q6Z2G9	428	Tubby-like F-box protein	no	no	0.907	0.502	0.597	7e-71
Q2QXB2	445	Tubby-like F-box protein	no	no	0.915	0.487	0.544	2e-68
Q75HX5	445	Tubby-like F-box protein	no	no	0.915	0.487	0.56	2e-68
Q9SQU1	380	Tubby-like F-box protein	no	no	0.864	0.539	0.632	6e-68
Q9FRH7	445	Tubby-like F-box protein	no	no	0.915	0.487	0.548	9e-68
Q8LJA9	448	Tubby-like F-box protein	no	no	0.907	0.479	0.537	2e-66
Q6NPQ1	389	Tubby-like F-box protein	no	no	0.864	0.526	0.592	3e-66

>sp|Q8VY21|TLP3_ARATH Tubby-like F-box protein 3 OS=Arabidopsis thaliana GN=TULP3 PE=2 SV=1

 Score =  345 bits (886), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 180/233 (77%), Positives = 198/233 (84%), Gaps = 4/233 (1%)

Query: 6   VSRGYNFMLVCFFLARSNFLGTKFIVYDGQPPHAGAKMTRSRSTRLANLKQVSPRIPFGN 65
           VSRG N  +      RSNFLGTKF VYD QP + G ++TR+RS+RL +LKQVSPRIP GN
Sbjct: 177 VSRGSNTYIGKL---RSNFLGTKFTVYDAQPTNPGTQVTRTRSSRLLSLKQVSPRIPSGN 233

Query: 66  YSVAHISYELNVLGSRGPRRMQCVMDSIPASAIESGGVAPTQTEFLFSNADSFPSIPFFR 125
           Y VAHISYELNVLGSRGPRRMQCVMD+IPASA+E GG APTQTE + SN DSFPS  FFR
Sbjct: 234 YPVAHISYELNVLGSRGPRRMQCVMDAIPASAVEPGGTAPTQTELVHSNLDSFPSFSFFR 293

Query: 126 SKSNRSEKFLSGPL-ACQKDGALVLRNKAPRWHEQLQCWCLNFHGRVTVASVKNFQLVAS 184
           SKS R+E   SGP  A QK+G LVL+NKAPRWHEQLQCWCLNF+GRVTVASVKNFQLVA+
Sbjct: 294 SKSIRAESLPSGPSSAAQKEGLLVLKNKAPRWHEQLQCWCLNFNGRVTVASVKNFQLVAA 353

Query: 185 PENGPAGLEHEKIILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFDTKIACE 237
           PENGPAG EHE +ILQFGKVGKD+FTMDY+YPISAFQAF ICLSSFDTKIACE
Sbjct: 354 PENGPAGPEHENVILQFGKVGKDVFTMDYQYPISAFQAFTICLSSFDTKIACE 406

Arabidopsis thaliana (taxid: 3702)

>sp|Q10LG8|TLP6_ORYSJ Tubby-like F-box protein 6 OS=Oryza sativa subsp. japonica GN=TULP6 PE=2 SV=1

 Score =  340 bits (873), Expect = 4e-93,   Method: Compositional matrix adjust.
 Identities = 161/217 (74%), Positives = 181/217 (83%), Gaps = 1/217 (0%)

Query: 21  RSNFLGTKFIVYDGQPPHAGAKMTRSRSTRLANLKQVSPRIPFGNYSVAHISYELNVLGS 80
           RSNFLGTKF VYD  PP+ GA +++SRS R+  L QVSPR+P GNY V+HISYELNVLG+
Sbjct: 188 RSNFLGTKFTVYDAHPPYDGAVVSKSRSARVVGLNQVSPRVPAGNYPVSHISYELNVLGA 247

Query: 81  RGPRRMQCVMDSIPASAIESGGVAPTQTEFLFSNADSFPSIPFFRSKSNRSEKFLSGPLA 140
           RGPRRM C+MDSIP SA++ GG APTQTEF  S  DSFPSI FFRSKS R +   S  L+
Sbjct: 248 RGPRRMNCIMDSIPTSAVQEGGKAPTQTEFPLSGLDSFPSISFFRSKSARIDSATS-QLS 306

Query: 141 CQKDGALVLRNKAPRWHEQLQCWCLNFHGRVTVASVKNFQLVASPENGPAGLEHEKIILQ 200
            QK+  LVL+NK+PRWHEQLQCWCLNF GRVTVASVKNFQLVAS ENGP   E +K+ILQ
Sbjct: 307 TQKEEKLVLKNKSPRWHEQLQCWCLNFRGRVTVASVKNFQLVASDENGPTNQEQDKVILQ 366

Query: 201 FGKVGKDLFTMDYRYPISAFQAFAICLSSFDTKIACE 237
           FGK+GKDLFTMDYRYPISAFQ+FAICLSSFDTKIACE
Sbjct: 367 FGKIGKDLFTMDYRYPISAFQSFAICLSSFDTKIACE 403

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q8H485|TLP11_ORYSJ Tubby-like F-box protein 11 OS=Oryza sativa subsp. japonica GN=TULP11 PE=2 SV=1

 Score =  325 bits (832), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 154/217 (70%), Positives = 173/217 (79%), Gaps = 1/217 (0%)

Query: 21  RSNFLGTKFIVYDGQPPHAGAKMTRSRSTRLANLKQVSPRIPFGNYSVAHISYELNVLGS 80
           RSNFLGTKF +YD  PP+AG  +++ +S R+     +SPRIP GNY V+HISYELNVLGS
Sbjct: 191 RSNFLGTKFTIYDAHPPYAGDVISKGQSARVIGSNHLSPRIPAGNYPVSHISYELNVLGS 250

Query: 81  RGPRRMQCVMDSIPASAIESGGVAPTQTEFLFSNADSFPSIPFFRSKSNRSEKFLSGPLA 140
           RGPRRM C MDSIP SAIE GG APTQTEF  S  +SF SIPFF+SKS R+    +  L 
Sbjct: 251 RGPRRMHCAMDSIPVSAIEQGGTAPTQTEFPLSYHESFTSIPFFKSKSVRANNS-TASLL 309

Query: 141 CQKDGALVLRNKAPRWHEQLQCWCLNFHGRVTVASVKNFQLVASPENGPAGLEHEKIILQ 200
            Q    LVL+NK+PRWHE LQCWCLNFHGRVTVASVKNFQLVAS E+ P   EH+ +ILQ
Sbjct: 310 TQNGSKLVLKNKSPRWHEHLQCWCLNFHGRVTVASVKNFQLVASDESNPTNQEHDDVILQ 369

Query: 201 FGKVGKDLFTMDYRYPISAFQAFAICLSSFDTKIACE 237
           FGKVGKD+FTMDYRYPISAFQAFAICLSSFDTKIACE
Sbjct: 370 FGKVGKDMFTMDYRYPISAFQAFAICLSSFDTKIACE 406

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q6Z2G9|TLP5_ORYSJ Tubby-like F-box protein 5 OS=Oryza sativa subsp. japonica GN=TULP5 PE=2 SV=1

 Score =  266 bits (681), Expect = 7e-71,   Method: Compositional matrix adjust.
 Identities = 135/226 (59%), Positives = 160/226 (70%), Gaps = 11/226 (4%)

Query: 21  RSNFLGTKFIVYDGQPPHAGAKMTRSRSTRLANLKQVSPRIPFGNYSVAHISYELNVLGS 80
           + NFLGTKF ++D QPP     +  +R ++  + KQVSPR+P GNY+VA +SYEL VL +
Sbjct: 205 KPNFLGTKFTIFDSQPPCDAVVLPNNRPSK-RHFKQVSPRLPLGNYNVATVSYELTVLRN 263

Query: 81  RGPRRMQCVMDSIPASAIESGGVAPTQTEFLFSNADSFPSI-------PFFRSKSNRSEK 133
           RGPRRMQC M SIPA  I+ GG APT T  + S  +  P++       P     S     
Sbjct: 264 RGPRRMQCTMHSIPALCIQEGGKAPTPTGIIHSLDEQVPALSTSKGKEPAIEFSSTSLSA 323

Query: 134 FLSGPLACQKDGALVLRNKAPRWHEQLQCWCLNFHGRVTVASVKNFQLVAS--PENGPAG 191
            LSGP+ C  +  LVL+NKAPRWHEQLQCWCLNF GRVTVASVKNFQLVAS  P  G   
Sbjct: 324 DLSGPV-CTNEVPLVLKNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLVASVDPSLGIPA 382

Query: 192 LEHEKIILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFDTKIACE 237
            E EK+ILQFGK+GKD+FTMDYRYP+SAFQAFAICL+SFDTK ACE
Sbjct: 383 AEQEKVILQFGKIGKDIFTMDYRYPLSAFQAFAICLTSFDTKPACE 428

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q2QXB2|TLP14_ORYSJ Tubby-like F-box protein 14 OS=Oryza sativa subsp. japonica GN=TULP14 PE=2 SV=1

 Score =  259 bits (661), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 136/250 (54%), Positives = 172/250 (68%), Gaps = 33/250 (13%)

Query: 21  RSNFLGTKFIVYDGQPPHAGAKMTRS-RSTRLANLKQVSPRIPFGNYSVAHISYELNVLG 79
           RSN LGTKF++YD QPP   A +++S +++R    ++VSP+ P   YS+A +SYELNVLG
Sbjct: 196 RSNLLGTKFVIYDTQPPCNTANVSQSGKTSRRFYSRKVSPKNPSSTYSIAQVSYELNVLG 255

Query: 80  SRGPRRMQCVMDSIPASAIESGGVAPTQTEFLFSNA--DSFPSIPFFRSK-SNRSEKFLS 136
           +RGPRRM CVM SIPAS++E+GG  P Q + + + +  +SF SI F +S   +RS +F S
Sbjct: 256 TRGPRRMNCVMHSIPASSLEAGGTVPCQPDSVLARSLDESFGSISFSKSSIMDRSIRFSS 315

Query: 137 ---------GPLAC---------QKDGALVLRNKAPRWHEQLQCWCLNFHGRVTVASVKN 178
                    GP+            K+  L+LRNKAPRWHEQLQCWCLNF GRVTVASVKN
Sbjct: 316 SRYSDISVGGPMVGGQALGDSDESKERPLILRNKAPRWHEQLQCWCLNFKGRVTVASVKN 375

Query: 179 FQLVASPENGPAGL-----------EHEKIILQFGKVGKDLFTMDYRYPISAFQAFAICL 227
           FQLVA+ +                 +H+K+ILQFGKV KD+FTMDYRYP+SAFQAFAICL
Sbjct: 376 FQLVAATQPAAGAPTPSQPAPPPPPDHDKVILQFGKVAKDMFTMDYRYPLSAFQAFAICL 435

Query: 228 SSFDTKIACE 237
           SSFDTK+ACE
Sbjct: 436 SSFDTKLACE 445

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q75HX5|TLP8_ORYSJ Tubby-like F-box protein 8 OS=Oryza sativa subsp. japonica GN=TULP8 PE=2 SV=1

 Score =  258 bits (660), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 140/250 (56%), Positives = 169/250 (67%), Gaps = 33/250 (13%)

Query: 21  RSNFLGTKFIVYDGQPPHAGAKMT-RSRSTRLANLKQVSPRIPFGNYSVAHISYELNVLG 79
           RSNFLGTKFI+YD QP + GA +    RS+R  N K+VSP++P G+Y++A ++YELNVLG
Sbjct: 196 RSNFLGTKFIIYDTQPSYNGAVIPPVGRSSRRFNSKKVSPKMPSGSYNIAQVTYELNVLG 255

Query: 80  SRGPRRMQCVMDSIPASAIESGGVAPTQTEFLFSNA--DSFPSIPFFRSKS--NRS---- 131
           +RGPRRM CVM SIPAS++E GG+ P Q E +   A  +SF S   F   S  +RS    
Sbjct: 256 TRGPRRMHCVMHSIPASSVEPGGIVPGQPEQIVPRAFEESFRSTTSFSKSSIMDRSMDFS 315

Query: 132 ----------EKFLSGPLACQKDGA-----LVLRNKAPRWHEQLQCWCLNFHGRVTVASV 176
                          G +   ++G      LVLRNKAPRWHEQLQCWCLNF GRVT+ASV
Sbjct: 316 SSRDFSSARFSDIAGGTINGDEEGQNKERPLVLRNKAPRWHEQLQCWCLNFRGRVTIASV 375

Query: 177 KNFQLV---------ASPENGPAGLEHEKIILQFGKVGKDLFTMDYRYPISAFQAFAICL 227
           KNFQL+         A   + PA  E +KIILQFGKV KD+FTMDYRYP+SAFQAFAICL
Sbjct: 376 KNFQLIAAPAQPPAGAPTPSQPAPPEQDKIILQFGKVAKDMFTMDYRYPLSAFQAFAICL 435

Query: 228 SSFDTKIACE 237
           SSFDTK+ACE
Sbjct: 436 SSFDTKLACE 445

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9SQU1|TLP9_ARATH Tubby-like F-box protein 9 OS=Arabidopsis thaliana GN=TULP9 PE=1 SV=1

 Score =  257 bits (656), Expect = 6e-68,   Method: Compositional matrix adjust.
 Identities = 141/223 (63%), Positives = 163/223 (73%), Gaps = 18/223 (8%)

Query: 21  RSNFLGTKFIVYDGQPPHAGAKMTRSRSTRLANLKQVSPRIPFGNYSVAHISYELNVLGS 80
           RSNFLGTKF V+DG    A AKM +SRS+   N  +VSPR+P G+Y +AHISYELNVLGS
Sbjct: 170 RSNFLGTKFTVFDGSQTGA-AKMQKSRSS---NFIKVSPRVPQGSYPIAHISYELNVLGS 225

Query: 81  RGPRRMQCVMDSIPASAIESGGVAPTQTEFLFSNADSFPSIPFFRSKSNRSEKFLSGPLA 140
           RGPRRM+C+MD+IP S +ES GV  + +   FS+     S P FRS    S+   S   +
Sbjct: 226 RGPRRMRCIMDTIPMSIVESRGVVASTSISSFSSR----SSPVFRS---HSKPLRSNSAS 278

Query: 141 CQKDG------ALVLRNKAPRWHEQLQCWCLNFHGRVTVASVKNFQLVASPENGPAGLEH 194
           C   G       LVL NKAPRWHEQL+CWCLNFHGRVTVASVKNFQLVA   +  AG   
Sbjct: 279 CSDSGNNLGDPPLVLSNKAPRWHEQLRCWCLNFHGRVTVASVKNFQLVAV-SDCEAGQTS 337

Query: 195 EKIILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFDTKIACE 237
           E+IILQFGKVGKD+FTMDY YPISAFQAFAICLSSF+T+IACE
Sbjct: 338 ERIILQFGKVGKDMFTMDYGYPISAFQAFAICLSSFETRIACE 380

Component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins. Confers sensitivity to ABA during seed germination and early seedling development.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FRH7|TLP10_ARATH Tubby-like F-box protein 10 OS=Arabidopsis thaliana GN=TULP10 PE=1 SV=1

 Score =  256 bits (654), Expect = 9e-68,   Method: Compositional matrix adjust.
 Identities = 137/250 (54%), Positives = 170/250 (68%), Gaps = 33/250 (13%)

Query: 21  RSNFLGTKFIVYDGQPP---HAGAKMTRSRSTRLANLKQVSPRIPFGNYSVAHISYELNV 77
           RSNFLGTKF+VYD QPP    + A +T   S    + ++VSP++P G+Y++A I+YELNV
Sbjct: 196 RSNFLGTKFLVYDTQPPPNTSSSALITDRTSRSRFHSRRVSPKVPSGSYNIAQITYELNV 255

Query: 78  LGSRGPRRMQCVMDSIPASAIESGGVAPTQTEFL----FSNADSFPS-IPFFRSKSNR-- 130
           LG+RGPRRM C+M+SIP S++E GG  P Q E L    +S  DSF S I F +S  +   
Sbjct: 256 LGTRGPRRMHCIMNSIPISSLEPGGSVPNQPEKLVPAPYSLDDSFRSNISFSKSSFDHRS 315

Query: 131 ----SEKFLSGPLACQKDGA------LVLRNKAPRWHEQLQCWCLNFHGRVTVASVKNFQ 180
               S +F    ++C  +        L+L+NK PRWHEQLQCWCLNF GRVTVASVKNFQ
Sbjct: 316 LDFSSSRFSEMGISCDDNEEEASFRPLILKNKQPRWHEQLQCWCLNFRGRVTVASVKNFQ 375

Query: 181 LVASPENGPAGL-------------EHEKIILQFGKVGKDLFTMDYRYPISAFQAFAICL 227
           LVA+ +  P G              E +K+ILQFGKVGKD+FTMDYRYP+SAFQAFAICL
Sbjct: 376 LVAARQPQPQGTGAAAAPTSAPAHPEQDKVILQFGKVGKDMFTMDYRYPLSAFQAFAICL 435

Query: 228 SSFDTKIACE 237
           SSFDTK+ACE
Sbjct: 436 SSFDTKLACE 445

Component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8LJA9|TLP3_ORYSJ Tubby-like F-box protein 3 OS=Oryza sativa subsp. japonica GN=TULP3 PE=2 SV=1

 Score =  252 bits (643), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 137/255 (53%), Positives = 169/255 (66%), Gaps = 40/255 (15%)

Query: 21  RSNFLGTKFIVYDGQPPHAGAKMTR-SRSTRLANLKQVSPRIPFGNYSVAHISYELNVLG 79
           RSNFLGTKFI+YD QPP+ GA +    R+++  N  +VSP++P   Y++A +SYELNVLG
Sbjct: 196 RSNFLGTKFIIYDTQPPYNGAVVPHVGRTSKRFNSTKVSPKVPSVTYNIAQVSYELNVLG 255

Query: 80  SRGPRRMQCVMDSIPASAIESGGVAPTQTEFLFSNA--DSFPSIPFF----RSKSNRSEK 133
           +RGPRRM+C+M SIPAS++E GG+ P Q E +   A  DSF S   F    RS ++ S+ 
Sbjct: 256 TRGPRRMRCMMHSIPASSVEPGGIVPGQPEQIVPRALEDSFRSTTSFSQSFRSTTSFSKS 315

Query: 134 FL--------------SGPLACQKDGA------LVLRNKAPRWHEQLQCWCLNFHGRVTV 173
            +              SG +    D        LVLRNK PRWHEQLQCWCLNF GRVT+
Sbjct: 316 IMDPSMDFSSARFSDISGSIMGGDDNGEIKERPLVLRNKPPRWHEQLQCWCLNFRGRVTI 375

Query: 174 ASVKNFQLV-----------ASPENGPAGLEHEKIILQFGKVGKDLFTMDYRYPISAFQA 222
           ASVKNFQLV              + GPA  + EK+ILQFGKV +D+FTMDYRYP+SAFQA
Sbjct: 376 ASVKNFQLVAAPSPPPAGAPTPSQPGPA--DPEKVILQFGKVARDMFTMDYRYPLSAFQA 433

Query: 223 FAICLSSFDTKIACE 237
           FAICLSSFDTK+ACE
Sbjct: 434 FAICLSSFDTKLACE 448

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q6NPQ1|TLP11_ARATH Tubby-like F-box protein 11 OS=Arabidopsis thaliana GN=TULP11 PE=2 SV=1

 Score =  251 bits (641), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 134/226 (59%), Positives = 160/226 (70%), Gaps = 21/226 (9%)

Query: 21  RSNFLGTKFIVYDGQ--PPHAGAKMTRSRSTRLANLKQVSPRIPFGNYSVAHISYELNVL 78
           RSNFLGTKF V+DG   P    AK+ +SRS    N  +VS ++P G+Y VAHI+YELNVL
Sbjct: 176 RSNFLGTKFTVFDGNLLPSTGAAKLRKSRS---YNPAKVSAKVPLGSYPVAHITYELNVL 232

Query: 79  GSRGPRRMQCVMDSIPASAIESGGVAPTQTEFLFSNADSFPSIPFFRSKSNRSE-KFLSG 137
           GSRGPR+MQC+MD+IP S +E  GVA   +EF              RS  +RS+ K L  
Sbjct: 233 GSRGPRKMQCLMDTIPTSTMEPQGVASEPSEFPLLGT---------RSTLSRSQSKPLRS 283

Query: 138 PLACQKDGALVLRNKAPRWHEQLQCWCLNFHGRVTVASVKNFQLVASPENGPAGL----- 192
             +  K+  LVL NK PRWHEQL+CWCLNFHGRVTVASVKNFQLVA+  +  +G      
Sbjct: 284 SSSHLKETPLVLSNKTPRWHEQLRCWCLNFHGRVTVASVKNFQLVAAGASCGSGTGMSPE 343

Query: 193 -EHEKIILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFDTKIACE 237
            + E+IILQFGKVGKD+FTMDY YPISAFQAFAICLSSF+T+IACE
Sbjct: 344 RQSERIILQFGKVGKDMFTMDYGYPISAFQAFAICLSSFETRIACE 389

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	237
255551637	390	phosphoric diester hydrolase, putative [	0.915	0.556	0.843	1e-107
356549056	389	PREDICTED: tubby-like F-box protein 6-li	0.915	0.557	0.843	1e-106
94442918	222	tubby protein [Platanus x acerifolia]	0.915	0.977	0.853	1e-106
356555565	385	PREDICTED: tubby-like F-box protein 6-li	0.915	0.563	0.843	1e-106
297736916	350	unnamed protein product [Vitis vinifera]	0.915	0.62	0.843	1e-105
224107205	395	f-box family protein [Populus trichocarp	0.915	0.549	0.840	1e-105
225432392	374	PREDICTED: tubby-like F-box protein 6-li	0.915	0.580	0.843	1e-105
118486104	392	unknown [Populus trichocarpa]	0.915	0.553	0.834	1e-104
302399101	392	TLP domain class transcription factor [M	0.915	0.553	0.834	1e-104
357447461	393	Tubby-like F-box protein [Medicago trunc	0.915	0.552	0.831	1e-103

>gi|255551637|ref|XP_002516864.1| phosphoric diester hydrolase, putative [Ricinus communis] gi|223543952|gb|EEF45478.1| phosphoric diester hydrolase, putative [Ricinus communis]

 Score =  393 bits (1009), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 183/217 (84%), Positives = 197/217 (90%)

Query: 21  RSNFLGTKFIVYDGQPPHAGAKMTRSRSTRLANLKQVSPRIPFGNYSVAHISYELNVLGS 80
           RSNFLGTKF V+DGQPPHAGAKM +SRSTRL NLKQVSPR+P GNY +AH+SYELNVLGS
Sbjct: 174 RSNFLGTKFTVFDGQPPHAGAKMMKSRSTRLVNLKQVSPRVPAGNYPIAHMSYELNVLGS 233

Query: 81  RGPRRMQCVMDSIPASAIESGGVAPTQTEFLFSNADSFPSIPFFRSKSNRSEKFLSGPLA 140
           RGPRRMQCVMD+IPA++I  GG APTQTEF   + D  PS+PFFRSKSN  E FLSGPL+
Sbjct: 234 RGPRRMQCVMDAIPATSIGPGGTAPTQTEFAHHSVDILPSLPFFRSKSNCVENFLSGPLS 293

Query: 141 CQKDGALVLRNKAPRWHEQLQCWCLNFHGRVTVASVKNFQLVASPENGPAGLEHEKIILQ 200
            QKDGAL+L+NK+PRWHEQLQCWCLNFHGRVTVASVKNFQLVASPENGP G EHEKIILQ
Sbjct: 294 SQKDGALILKNKSPRWHEQLQCWCLNFHGRVTVASVKNFQLVASPENGPPGPEHEKIILQ 353

Query: 201 FGKVGKDLFTMDYRYPISAFQAFAICLSSFDTKIACE 237
           FGKVGKDLFTMDYRYPISAFQAFAICLSSFDTKIACE
Sbjct: 354 FGKVGKDLFTMDYRYPISAFQAFAICLSSFDTKIACE 390

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356549056|ref|XP_003542914.1| PREDICTED: tubby-like F-box protein 6-like [Glycine max]

 Score =  391 bits (1004), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 183/217 (84%), Positives = 195/217 (89%)

Query: 21  RSNFLGTKFIVYDGQPPHAGAKMTRSRSTRLANLKQVSPRIPFGNYSVAHISYELNVLGS 80
           RSNFLGTKF +YD Q PH GAK+ +SRSTRL NLKQVSP++P GNY VAHISYELNVLGS
Sbjct: 173 RSNFLGTKFTIYDSQLPHTGAKIMKSRSTRLVNLKQVSPKVPTGNYPVAHISYELNVLGS 232

Query: 81  RGPRRMQCVMDSIPASAIESGGVAPTQTEFLFSNADSFPSIPFFRSKSNRSEKFLSGPLA 140
           RGPRRM CVMDSIPA+AIE GGVAPTQTEF  +N D FPS PFFRSKSNR+E  +SGPL 
Sbjct: 233 RGPRRMHCVMDSIPATAIEPGGVAPTQTEFSLNNIDMFPSFPFFRSKSNRAENSMSGPLV 292

Query: 141 CQKDGALVLRNKAPRWHEQLQCWCLNFHGRVTVASVKNFQLVASPENGPAGLEHEKIILQ 200
            QKDG LVL+NKAPRWHEQLQCWCLNFHGRVT+ASVKNFQLVAS ENGPAG EH+KIILQ
Sbjct: 293 DQKDGMLVLKNKAPRWHEQLQCWCLNFHGRVTIASVKNFQLVASAENGPAGPEHDKIILQ 352

Query: 201 FGKVGKDLFTMDYRYPISAFQAFAICLSSFDTKIACE 237
           FGKVGKDLFTMDYRYPISAFQAFAICLSSFDTKIACE
Sbjct: 353 FGKVGKDLFTMDYRYPISAFQAFAICLSSFDTKIACE 389

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|94442918|emb|CAJ91134.1| tubby protein [Platanus x acerifolia]

 Score =  391 bits (1004), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 186/218 (85%), Positives = 197/218 (90%), Gaps = 1/218 (0%)

Query: 21  RSNFLGTKFIVYDGQPPHAGAKMTRSRSTRLANLKQVSPRIPFGNYSVAHISYELNVLGS 80
           RSNFLGTKF +YDGQPPHAGA +T+SRSTRL  LKQVSPRIP GNYSVAHISYE+NVLGS
Sbjct: 5   RSNFLGTKFTIYDGQPPHAGATVTKSRSTRLVGLKQVSPRIPAGNYSVAHISYEVNVLGS 64

Query: 81  RGPRRMQCVMDSIPASAIESGGVAPTQTEFLFSNADSFPSIPFFRSKSNRSEKFLS-GPL 139
           RGPRRMQCVMD+IPASAIE GGVAPTQTE   SNADSFP +PFFRSKS R+E  L  GPL
Sbjct: 65  RGPRRMQCVMDAIPASAIEPGGVAPTQTELPLSNADSFPLLPFFRSKSTRTENHLQPGPL 124

Query: 140 ACQKDGALVLRNKAPRWHEQLQCWCLNFHGRVTVASVKNFQLVASPENGPAGLEHEKIIL 199
             QKDG LVL+NKAPRWHEQLQCWCLNF GRVTVASVKNFQLVASP NGPAG EHE++IL
Sbjct: 125 VSQKDGVLVLKNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLVASPGNGPAGQEHEEVIL 184

Query: 200 QFGKVGKDLFTMDYRYPISAFQAFAICLSSFDTKIACE 237
           QFGKVGKDLFTMDY+YPISAFQAFAICLSSFDTKIACE
Sbjct: 185 QFGKVGKDLFTMDYQYPISAFQAFAICLSSFDTKIACE 222

Source: Platanus x acerifolia

Species: Platanus x acerifolia

Genus: Platanus

Family: Platanaceae

Order: Proteales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356555565|ref|XP_003546101.1| PREDICTED: tubby-like F-box protein 6-like [Glycine max]

 Score =  390 bits (1001), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 183/217 (84%), Positives = 195/217 (89%)

Query: 21  RSNFLGTKFIVYDGQPPHAGAKMTRSRSTRLANLKQVSPRIPFGNYSVAHISYELNVLGS 80
           RSNFLGTKF +YDGQPPHAGAK+ +SRSTRL NLKQVSP++P GNY VAHISYELNVLGS
Sbjct: 169 RSNFLGTKFTIYDGQPPHAGAKIMKSRSTRLVNLKQVSPKVPTGNYPVAHISYELNVLGS 228

Query: 81  RGPRRMQCVMDSIPASAIESGGVAPTQTEFLFSNADSFPSIPFFRSKSNRSEKFLSGPLA 140
           RGPRRM CVMDSIPA+AIE GGVAP QTEF  +N D FPS PFFRSKSNR E  +SGPL 
Sbjct: 229 RGPRRMHCVMDSIPAAAIEPGGVAPVQTEFSLNNIDMFPSFPFFRSKSNRVENSVSGPLV 288

Query: 141 CQKDGALVLRNKAPRWHEQLQCWCLNFHGRVTVASVKNFQLVASPENGPAGLEHEKIILQ 200
            QKDG LVL+NKAPRWHEQLQCWCLNFHGRVT+ASVKNFQLVAS EN PAG EH+KIILQ
Sbjct: 289 DQKDGMLVLKNKAPRWHEQLQCWCLNFHGRVTIASVKNFQLVASAENRPAGPEHDKIILQ 348

Query: 201 FGKVGKDLFTMDYRYPISAFQAFAICLSSFDTKIACE 237
           FGKVGKDLFTMDYR+PISAFQAFAICLSSFDTKIACE
Sbjct: 349 FGKVGKDLFTMDYRFPISAFQAFAICLSSFDTKIACE 385

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297736916|emb|CBI26117.3| unnamed protein product [Vitis vinifera]

 Score =  386 bits (991), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 183/217 (84%), Positives = 194/217 (89%)

Query: 21  RSNFLGTKFIVYDGQPPHAGAKMTRSRSTRLANLKQVSPRIPFGNYSVAHISYELNVLGS 80
           RSNFLGTKF VYDGQPPH+GAK+ R+RSTRL  LKQVSPR+P G+Y VAHISYE+NVLGS
Sbjct: 134 RSNFLGTKFTVYDGQPPHSGAKIMRNRSTRLVGLKQVSPRVPAGSYPVAHISYEVNVLGS 193

Query: 81  RGPRRMQCVMDSIPASAIESGGVAPTQTEFLFSNADSFPSIPFFRSKSNRSEKFLSGPLA 140
           RGPRRMQC MDSIPASAIE GGV PTQTE   SN D FPS  FFRSKS+  E  LS PLA
Sbjct: 194 RGPRRMQCSMDSIPASAIEPGGVTPTQTEIRLSNPDVFPSFSFFRSKSHSVENSLSEPLA 253

Query: 141 CQKDGALVLRNKAPRWHEQLQCWCLNFHGRVTVASVKNFQLVASPENGPAGLEHEKIILQ 200
            +KDGALVL+NKAPRWHEQLQCWCLNFHGRVTVASVKNFQLVASPE+GPAG +HEKIILQ
Sbjct: 254 DKKDGALVLKNKAPRWHEQLQCWCLNFHGRVTVASVKNFQLVASPEDGPAGQQHEKIILQ 313

Query: 201 FGKVGKDLFTMDYRYPISAFQAFAICLSSFDTKIACE 237
           FGKVGKDLFTMDYRYPISAFQAFAICLSSFDTKIACE
Sbjct: 314 FGKVGKDLFTMDYRYPISAFQAFAICLSSFDTKIACE 350

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224107205|ref|XP_002314408.1| f-box family protein [Populus trichocarpa] gi|222863448|gb|EEF00579.1| f-box family protein [Populus trichocarpa]

 Score =  386 bits (991), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 185/220 (84%), Positives = 199/220 (90%), Gaps = 3/220 (1%)

Query: 21  RSNFLGTKFIVYDGQPPHAGAKMTRSRSTRLANLKQVSPRIPFGNYSVAHISYELNVLGS 80
           RSNFLGTKF V+DGQPPHAGAKMT+S S+RL NLKQVSPR+P GNY VA+ISYELNVLGS
Sbjct: 176 RSNFLGTKFTVFDGQPPHAGAKMTKSYSSRLVNLKQVSPRVPTGNYPVANISYELNVLGS 235

Query: 81  RGPRRMQCVMDSIPASAIESGGVAPTQTEFLFSNADSFPSIPFFRSKSNRSEK---FLSG 137
           RGPRRM C+MD+IPA+AIE GGVAPTQTEF   +AD FPS+ FFRSKSNR E+   F SG
Sbjct: 236 RGPRRMHCIMDAIPAAAIEPGGVAPTQTEFYHHSADFFPSLLFFRSKSNRVERVESFQSG 295

Query: 138 PLACQKDGALVLRNKAPRWHEQLQCWCLNFHGRVTVASVKNFQLVASPENGPAGLEHEKI 197
           PL+ Q++GALVLRNKAPRWHEQLQCWCLNFHGRVTVASVKNFQLVAS ENGPAG EHE I
Sbjct: 296 PLSSQREGALVLRNKAPRWHEQLQCWCLNFHGRVTVASVKNFQLVASQENGPAGPEHENI 355

Query: 198 ILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFDTKIACE 237
           ILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFDTKIACE
Sbjct: 356 ILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFDTKIACE 395

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225432392|ref|XP_002276906.1| PREDICTED: tubby-like F-box protein 6-like [Vitis vinifera]

 Score =  385 bits (989), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 183/217 (84%), Positives = 194/217 (89%)

Query: 21  RSNFLGTKFIVYDGQPPHAGAKMTRSRSTRLANLKQVSPRIPFGNYSVAHISYELNVLGS 80
           RSNFLGTKF VYDGQPPH+GAK+ R+RSTRL  LKQVSPR+P G+Y VAHISYE+NVLGS
Sbjct: 158 RSNFLGTKFTVYDGQPPHSGAKIMRNRSTRLVGLKQVSPRVPAGSYPVAHISYEVNVLGS 217

Query: 81  RGPRRMQCVMDSIPASAIESGGVAPTQTEFLFSNADSFPSIPFFRSKSNRSEKFLSGPLA 140
           RGPRRMQC MDSIPASAIE GGV PTQTE   SN D FPS  FFRSKS+  E  LS PLA
Sbjct: 218 RGPRRMQCSMDSIPASAIEPGGVTPTQTEIRLSNPDVFPSFSFFRSKSHSVENSLSEPLA 277

Query: 141 CQKDGALVLRNKAPRWHEQLQCWCLNFHGRVTVASVKNFQLVASPENGPAGLEHEKIILQ 200
            +KDGALVL+NKAPRWHEQLQCWCLNFHGRVTVASVKNFQLVASPE+GPAG +HEKIILQ
Sbjct: 278 DKKDGALVLKNKAPRWHEQLQCWCLNFHGRVTVASVKNFQLVASPEDGPAGQQHEKIILQ 337

Query: 201 FGKVGKDLFTMDYRYPISAFQAFAICLSSFDTKIACE 237
           FGKVGKDLFTMDYRYPISAFQAFAICLSSFDTKIACE
Sbjct: 338 FGKVGKDLFTMDYRYPISAFQAFAICLSSFDTKIACE 374

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118486104|gb|ABK94895.1| unknown [Populus trichocarpa]

 Score =  385 bits (988), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 181/217 (83%), Positives = 195/217 (89%)

Query: 21  RSNFLGTKFIVYDGQPPHAGAKMTRSRSTRLANLKQVSPRIPFGNYSVAHISYELNVLGS 80
           RSNFLGTKF V+DGQPPHAGAKMT+SRS+RL NLKQVSPR+P GNY VA ISYELNVLGS
Sbjct: 176 RSNFLGTKFTVFDGQPPHAGAKMTKSRSSRLVNLKQVSPRVPTGNYPVASISYELNVLGS 235

Query: 81  RGPRRMQCVMDSIPASAIESGGVAPTQTEFLFSNADSFPSIPFFRSKSNRSEKFLSGPLA 140
           RGPRRM C+MD+IPASAIE GG+APTQTEF   N D  PS+PFFRSKS+R E F SG L+
Sbjct: 236 RGPRRMHCIMDAIPASAIEPGGIAPTQTEFSHHNVDFLPSLPFFRSKSSRVESFQSGSLS 295

Query: 141 CQKDGALVLRNKAPRWHEQLQCWCLNFHGRVTVASVKNFQLVASPENGPAGLEHEKIILQ 200
            Q++ ALVL+NKAPRWHEQLQCWCLNFHGRVTVASVKNFQLV SPENGPAG EHE IILQ
Sbjct: 296 SQRERALVLKNKAPRWHEQLQCWCLNFHGRVTVASVKNFQLVVSPENGPAGPEHENIILQ 355

Query: 201 FGKVGKDLFTMDYRYPISAFQAFAICLSSFDTKIACE 237
           FGKVGKDLFTMDYRYPISAFQAFA+CLSSFDTKIACE
Sbjct: 356 FGKVGKDLFTMDYRYPISAFQAFALCLSSFDTKIACE 392

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302399101|gb|ADL36845.1| TLP domain class transcription factor [Malus x domestica]

 Score =  384 bits (985), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 181/217 (83%), Positives = 194/217 (89%)

Query: 21  RSNFLGTKFIVYDGQPPHAGAKMTRSRSTRLANLKQVSPRIPFGNYSVAHISYELNVLGS 80
           RSNFLGTKF ++DGQP H+GAK+ +SRSTRL NLKQVSPR+P GNY VA I YELN+LGS
Sbjct: 176 RSNFLGTKFTIFDGQPSHSGAKIAKSRSTRLVNLKQVSPRVPAGNYPVAQIQYELNMLGS 235

Query: 81  RGPRRMQCVMDSIPASAIESGGVAPTQTEFLFSNADSFPSIPFFRSKSNRSEKFLSGPLA 140
           RGPRRMQC MDSIP+S+IE GGVAPTQ EF  SNA+ FPS+ F RSKSNR E FLSGPLA
Sbjct: 236 RGPRRMQCTMDSIPSSSIEPGGVAPTQAEFSHSNAELFPSLSFNRSKSNRMESFLSGPLA 295

Query: 141 CQKDGALVLRNKAPRWHEQLQCWCLNFHGRVTVASVKNFQLVASPENGPAGLEHEKIILQ 200
            QKDG LVLRNK+PRWHEQLQCWCLNFHGRVTVASVKNFQLVASPENGP G EHEKIILQ
Sbjct: 296 RQKDGVLVLRNKSPRWHEQLQCWCLNFHGRVTVASVKNFQLVASPENGPPGPEHEKIILQ 355

Query: 201 FGKVGKDLFTMDYRYPISAFQAFAICLSSFDTKIACE 237
           FGKVGKD FTMDYRYPISAFQAF+ICLSSFDTKIACE
Sbjct: 356 FGKVGKDQFTMDYRYPISAFQAFSICLSSFDTKIACE 392

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357447461|ref|XP_003594006.1| Tubby-like F-box protein [Medicago truncatula] gi|355483054|gb|AES64257.1| Tubby-like F-box protein [Medicago truncatula]

 Score =  379 bits (972), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 182/219 (83%), Positives = 195/219 (89%), Gaps = 2/219 (0%)

Query: 21  RSNFLGTKFIVYDGQPPHAGAKMTRSRSTRLANLKQVSPRIPFGNYSVAHISYELNVLGS 80
           RSNFLGTKF +YDGQPPHAGAK T+SRSTRL NLKQVSP++P GNY VAHISYELNVLGS
Sbjct: 175 RSNFLGTKFTIYDGQPPHAGAKFTKSRSTRLVNLKQVSPKVPTGNYPVAHISYELNVLGS 234

Query: 81  RGPRRMQCVMDSIPASAIESGGVAPTQTEFLFSNADSFPSIPFFRSKSNR-SEKFLSGPL 139
           RGPRRM CVMDSIP+S+IE GGVAPTQTEF  +N + FP  PFFRSKSNR  E  LSGPL
Sbjct: 235 RGPRRMHCVMDSIPSSSIEPGGVAPTQTEFSLNNIEMFPLFPFFRSKSNRVVENSLSGPL 294

Query: 140 AC-QKDGALVLRNKAPRWHEQLQCWCLNFHGRVTVASVKNFQLVASPENGPAGLEHEKII 198
              +KDG LVL+NKAPRWHEQLQCWCLNFHGRVT+ASVKNFQLVAS ENG AG EH+KII
Sbjct: 295 VGDKKDGMLVLKNKAPRWHEQLQCWCLNFHGRVTIASVKNFQLVASAENGTAGPEHDKII 354

Query: 199 LQFGKVGKDLFTMDYRYPISAFQAFAICLSSFDTKIACE 237
           LQFGKVGKDLFTMD+RYPISAFQAFAICLSSFDTKIACE
Sbjct: 355 LQFGKVGKDLFTMDFRYPISAFQAFAICLSSFDTKIACE 393

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	237
TAIR|locus:2081101	380	TLP9 "AT3G06380" [Arabidopsis	0.864	0.539	0.632	8.5e-65
TAIR|locus:2032950	445	TLP10 "AT1G25280" [Arabidopsis	0.383	0.204	0.721	1.3e-63
TAIR|locus:2180034	389	TLP11 "AT5G18680" [Arabidopsis	0.869	0.529	0.6	1.2e-60
TAIR|locus:2025327	455	TLP1 "AT1G76900" [Arabidopsis	0.421	0.219	0.509	4.9e-60
TAIR|locus:2194686	429	TLP5 "AT1G43640" [Arabidopsis	0.683	0.377	0.520	6.9e-59
TAIR|locus:2009610	379	TLP7 "AT1G53320" [Arabidopsis	0.400	0.250	0.717	3.8e-56
TAIR|locus:2062121	394	TLP2 "AT2G18280" [Arabidopsis	0.873	0.525	0.545	1.8e-55
TAIR|locus:2036730	413	TLP6 "AT1G47270" [Arabidopsis	0.848	0.486	0.549	6.1e-55
UNIPROTKB|B0WI30	422	king-tubby2 "Protein king tubb	0.447	0.251	0.512	1.7e-31
UNIPROTKB|B0XFQ9	427	king-tubby1 "Protein king tubb	0.447	0.248	0.512	2.2e-31

TAIR|locus:2081101 TLP9 "AT3G06380" [Arabidopsis thaliana (taxid:3702)]

 Score = 660 (237.4 bits), Expect = 8.5e-65, P = 8.5e-65
 Identities = 141/223 (63%), Positives = 163/223 (73%)

Query:    21 RSNFLGTKFIVYDGQPPHAGAKMTRSRSTRLANLKQVSPRIPFGNYSVAHISYELNVLGS 80
             RSNFLGTKF V+DG    A AKM +SRS+   N  +VSPR+P G+Y +AHISYELNVLGS
Sbjct:   170 RSNFLGTKFTVFDGSQTGA-AKMQKSRSS---NFIKVSPRVPQGSYPIAHISYELNVLGS 225

Query:    81 RGPRRMQCVMDSIPASAIESGGVAPTQTEFLFSNADSFPSIPFFRSKSNRSEKFLSGPLA 140
             RGPRRM+C+MD+IP S +ES GV  + +   FS+  S    P FRS    S+   S   +
Sbjct:   226 RGPRRMRCIMDTIPMSIVESRGVVASTSISSFSSRSS----PVFRS---HSKPLRSNSAS 278

Query:   141 CQKDG------ALVLRNKAPRWHEQLQCWCLNFHGRVTVASVKNFQLVASPENGPAGLEH 194
             C   G       LVL NKAPRWHEQL+CWCLNFHGRVTVASVKNFQLVA  +   AG   
Sbjct:   279 CSDSGNNLGDPPLVLSNKAPRWHEQLRCWCLNFHGRVTVASVKNFQLVAVSDC-EAGQTS 337

Query:   195 EKIILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFDTKIACE 237
             E+IILQFGKVGKD+FTMDY YPISAFQAFAICLSSF+T+IACE
Sbjct:   338 ERIILQFGKVGKDMFTMDYGYPISAFQAFAICLSSFETRIACE 380

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008081 "phosphoric diester hydrolase activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0009620 "response to fungus" evidence=IMP

TAIR|locus:2032950 TLP10 "AT1G25280" [Arabidopsis thaliana (taxid:3702)]

 Score = 387 (141.3 bits), Expect = 1.3e-63, Sum P(2) = 1.3e-63
 Identities = 75/104 (72%), Positives = 84/104 (80%)

Query:   147 LVLRNKAPRWHEQLQCWCLNFHGRVTVASVKNFQLVAS-------------PENGPAGLE 193
             L+L+NK PRWHEQLQCWCLNF GRVTVASVKNFQLVA+             P + PA  E
Sbjct:   342 LILKNKQPRWHEQLQCWCLNFRGRVTVASVKNFQLVAARQPQPQGTGAAAAPTSAPAHPE 401

Query:   194 HEKIILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFDTKIACE 237
              +K+ILQFGKVGKD+FTMDYRYP+SAFQAFAICLSSFDTK+ACE
Sbjct:   402 QDKVILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE 445

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0008081 "phosphoric diester hydrolase activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0005886 "plasma membrane" evidence=IDA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=RCA

GO:0010359 "regulation of anion channel activity" evidence=RCA

GO:0043090 "amino acid import" evidence=RCA

GO:0005829 "cytosol" evidence=IDA

GO:0009536 "plastid" evidence=IDA

GO:0009620 "response to fungus" evidence=IMP

TAIR|locus:2180034 TLP11 "AT5G18680" [Arabidopsis thaliana (taxid:3702)]

 Score = 621 (223.7 bits), Expect = 1.2e-60, P = 1.2e-60
 Identities = 135/225 (60%), Positives = 161/225 (71%)

Query:    21 RSNFLGTKFIVYDGQ--PPHAGAKMTRSRSTRLANLKQVSPRIPFGNYSVAHISYELNVL 78
             RSNFLGTKF V+DG   P    AK+ +SRS    N  +VS ++P G+Y VAHI+YELNVL
Sbjct:   176 RSNFLGTKFTVFDGNLLPSTGAAKLRKSRSY---NPAKVSAKVPLGSYPVAHITYELNVL 232

Query:    79 GSRGPRRMQCVMDSIPASAIESGGVAPTQTEFLFSNADSFPSIPFFRSKSNRSEKFLSGP 138
             GSRGPR+MQC+MD+IP S +E  GVA   +EF      S  ++   +SK  RS    S  
Sbjct:   233 GSRGPRKMQCLMDTIPTSTMEPQGVASEPSEFPLLGTRS--TLSRSQSKPLRSS---SSH 287

Query:   139 LACQKDGALVLRNKAPRWHEQLQCWCLNFHGRVTVASVKNFQLVASPENGPAGL------ 192
             L   K+  LVL NK PRWHEQL+CWCLNFHGRVTVASVKNFQLVA+  +  +G       
Sbjct:   288 L---KETPLVLSNKTPRWHEQLRCWCLNFHGRVTVASVKNFQLVAAGASCGSGTGMSPER 344

Query:   193 EHEKIILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFDTKIACE 237
             + E+IILQFGKVGKD+FTMDY YPISAFQAFAICLSSF+T+IACE
Sbjct:   345 QSERIILQFGKVGKDMFTMDYGYPISAFQAFAICLSSFETRIACE 389

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008081 "phosphoric diester hydrolase activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:2025327 TLP1 "AT1G76900" [Arabidopsis thaliana (taxid:3702)]

 Score = 257 (95.5 bits), Expect = 4.9e-60, Sum P(3) = 4.9e-60
 Identities = 55/108 (50%), Positives = 72/108 (66%)

Query:    21 RSNFLGTKFIVYDGQPPH----AGAKMTRSRSTRLANLKQVSPRIPFGNYSVAHISYELN 76
             RSNFLGTKFI+YD QP +    A A      S R  + K+VSP++P G+Y +A +SYELN
Sbjct:   194 RSNFLGTKFIIYDTQPAYNSNIARAVQPVGLSRRFYS-KRVSPKVPSGSYKIAQVSYELN 252

Query:    77 VLGSRGPRRMQCVMDSIPASAIESGGVAPTQTEFLFSNA---DSFPSI 121
             VLG+RGPRRM C M+SIPAS++  GG  P Q + +   +   +SF SI
Sbjct:   253 VLGTRGPRRMHCAMNSIPASSLAEGGTVPGQPDIIVPRSILDESFRSI 300

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008081 "phosphoric diester hydrolase activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA;TAS

GO:0043687 "post-translational protein modification" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

TAIR|locus:2194686 TLP5 "AT1G43640" [Arabidopsis thaliana (taxid:3702)]

 Score = 412 (150.1 bits), Expect = 6.9e-59, Sum P(2) = 6.9e-59
 Identities = 87/167 (52%), Positives = 115/167 (68%)

Query:    21 RSNFLGTKFIVYDGQPPHAGAK-MTRSRSTRLANLKQVSPRIPFGNYSVAHISYELNVLG 79
             +SNFLGTKFIVYD  P +  ++ ++    +R  N K+VSP++P G+Y++A ++YELN+LG
Sbjct:   192 KSNFLGTKFIVYDTAPAYNSSQILSPPNRSRSFNSKKVSPKVPSGSYNIAQVTYELNLLG 251

Query:    80 SRGPRRMQCVMDSIPASAIESGGVAPTQTEFLFSNAD-SFPSIPFFRSKS-NRSEKFLSG 137
             +RGPRRM C+M SIP+ A+E GG  P+Q EFL  + D SF SI    SK  N S  F   
Sbjct:   252 TRGPRRMNCIMHSIPSLALEPGGTVPSQPEFLQRSLDESFRSIG--SSKIVNHSGDFTRP 309

Query:   138 PLACQKDGALVLRNKAPRWHEQLQCWCLNFHGRVTVASVKNFQLVAS 184
                  K   LVL+ K PRW + L+CWCLNF GRVTVASVKNFQL+++
Sbjct:   310 KEEEGKVRPLVLKTKPPRWLQPLRCWCLNFKGRVTVASVKNFQLMSA 356

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008081 "phosphoric diester hydrolase activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0009620 "response to fungus" evidence=IMP

TAIR|locus:2009610 TLP7 "AT1G53320" [Arabidopsis thaliana (taxid:3702)]

 Score = 376 (137.4 bits), Expect = 3.8e-56, Sum P(2) = 3.8e-56
 Identities = 71/99 (71%), Positives = 83/99 (83%)

Query:   143 KDGA--LVLRNKAPRWHEQLQCWCLNFHGRVTVASVKNFQLVASPENG-PAGL-EHEKII 198
             KDG+   +L+NKAPRWHE LQCWCLNFHGRVTVASVKNFQLVA+ +   P+G  + E ++
Sbjct:   281 KDGSSLTILKNKAPRWHEHLQCWCLNFHGRVTVASVKNFQLVATVDQSQPSGKGDEETVL 340

Query:   199 LQFGKVGKDLFTMDYRYPISAFQAFAICLSSFDTKIACE 237
             LQFGKVG D FTMDYR P+SAFQAFAICL+SF TK+ACE
Sbjct:   341 LQFGKVGDDTFTMDYRQPLSAFQAFAICLTSFGTKLACE 379

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0008081 "phosphoric diester hydrolase activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0009555 "pollen development" evidence=IMP

GO:0005829 "cytosol" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009536 "plastid" evidence=IDA

GO:0009620 "response to fungus" evidence=IMP

TAIR|locus:2062121 TLP2 "AT2G18280" [Arabidopsis thaliana (taxid:3702)]

 Score = 572 (206.4 bits), Expect = 1.8e-55, P = 1.8e-55
 Identities = 120/220 (54%), Positives = 156/220 (70%)

Query:    21 RSNFLGTKFIVYDGQPPHAGAKMTRSRSTRLANLKQVSPRIPFGNYSVAHISYELNVLGS 80
             RS FLGTKF +YD Q   + A+   +R  RL + KQ +P++P  + +V +I+YELNVL +
Sbjct:   184 RSGFLGTKFTIYDNQTASSTAQAQPNR--RL-HPKQAAPKLPTNSSTVGNITYELNVLRT 240

Query:    81 RGPRRMQCVMDSIPASAIESGGVAPTQTEFLFSNADSFPSIPFFRSKSNRSEKFLSGPLA 140
             RGPRRM C MDSIP S++ +    P+  + +     S PS P  + ++  ++K +     
Sbjct:   241 RGPRRMHCAMDSIPLSSVIA---EPSVVQGIEEEVSSSPS-P--KGETITTDKEIPDNSP 294

Query:   141 CQKDGALVLRNKAPRWHEQLQCWCLNFHGRVTVASVKNFQLVASPE---NGPAGLEHEKI 197
               +D  LVL+NK+PRWHEQLQCWCLNF GRVTVASVKNFQLVA  +   + P   EHE++
Sbjct:   295 SLRDQPLVLKNKSPRWHEQLQCWCLNFKGRVTVASVKNFQLVAEIDASLDAPPE-EHERV 353

Query:   198 ILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFDTKIACE 237
             ILQFGK+GKD+FTMDYRYP+SAFQAFAIC+SSFDTK ACE
Sbjct:   354 ILQFGKIGKDIFTMDYRYPLSAFQAFAICISSFDTKPACE 393

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0008081 "phosphoric diester hydrolase activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0005829 "cytosol" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009536 "plastid" evidence=IDA

GO:0009620 "response to fungus" evidence=IMP

TAIR|locus:2036730 TLP6 "AT1G47270" [Arabidopsis thaliana (taxid:3702)]

 Score = 567 (204.7 bits), Expect = 6.1e-55, P = 6.1e-55
 Identities = 123/224 (54%), Positives = 146/224 (65%)

Query:    21 RSNFLGTKFIVYDGQPPHAGAKMTRSRSTRLANLKQVSPRIPFGN--YSVAHISYELNVL 78
             RSNFLGTKF VY+ QPP    K+  S         QVSP +   +  Y++A I YELNVL
Sbjct:   206 RSNFLGTKFTVYENQPPPFNRKLPPSM--------QVSPWVSSSSSSYNIASILYELNVL 257

Query:    79 GSRGPRRMQCVMDSIPASAIESGGVAPTQTEFLFSNADSFPSIPFFRSKSNRSEKFLSGP 138
              +RGPRRMQC+M SIP SAI+ GG   + TEF          +  F S +   E  +  P
Sbjct:   258 RTRGPRRMQCIMHSIPISAIQEGGKIQSPTEFTNQGKKKKKPLMDFCSGNLGGESVIKEP 317

Query:   139 LACQKDGALVLRNKAPRWHEQLQCWCLNFHGRVTVASVKNFQLVASPENGPAGL-----E 193
             L        +L+NK+PRWHEQLQCWCLNF GRVTVASVKNFQLVA+       +     E
Sbjct:   318 L--------ILKNKSPRWHEQLQCWCLNFKGRVTVASVKNFQLVAAAAEAGKNMNIPEEE 369

Query:   194 HEKIILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFDTKIACE 237
              +++ILQFGK+GKD+FTMDYRYPISAFQAFAICLSSFDTK  CE
Sbjct:   370 QDRVILQFGKIGKDIFTMDYRYPISAFQAFAICLSSFDTKPVCE 413

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008081 "phosphoric diester hydrolase activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0009555 "pollen development" evidence=IMP

UNIPROTKB|B0WI30 king-tubby2 "Protein king tubby 2" [Culex quinquefasciatus (taxid:7176)]

 Score = 271 (100.5 bits), Expect = 1.7e-31, Sum P(3) = 1.7e-31
 Identities = 60/117 (51%), Positives = 76/117 (64%)

Query:   125 RSKSNRSEKFLSGPLACQK----DGALVLRNKAPRWHEQLQCWCLNFHGRVTVASVKNFQ 180
             R K N S+    G L   K    D  + L NK P W+++ Q + LNFHGRVT ASVKNFQ
Sbjct:   313 RVKINSSDSHGQGLLDSWKSKHMDNVVELHNKTPIWNDETQSYVLNFHGRVTQASVKNFQ 372

Query:   181 LVASPENGPAGLEHEKIILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFDTKIACE 237
             LV   ++ P     + I++QFG+   D+FTMD+RYP+ AFQAFAI LSSFD K+ACE
Sbjct:   373 LVH--DSDP-----DYIVMQFGRTSDDIFTMDFRYPLCAFQAFAIALSSFDGKLACE 422

GO:0005634 "nucleus" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

UNIPROTKB|B0XFQ9 king-tubby1 "Protein king tubby 1" [Culex quinquefasciatus (taxid:7176)]

 Score = 271 (100.5 bits), Expect = 2.2e-31, Sum P(3) = 2.2e-31
 Identities = 60/117 (51%), Positives = 76/117 (64%)

Query:   125 RSKSNRSEKFLSGPLACQK----DGALVLRNKAPRWHEQLQCWCLNFHGRVTVASVKNFQ 180
             R K N S+    G L   K    D  + L NK P W+++ Q + LNFHGRVT ASVKNFQ
Sbjct:   318 RVKINSSDSHGQGLLDSWKSKHMDNVVELHNKTPIWNDETQSYVLNFHGRVTQASVKNFQ 377

Query:   181 LVASPENGPAGLEHEKIILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFDTKIACE 237
             LV   ++ P     + I++QFG+   D+FTMD+RYP+ AFQAFAI LSSFD K+ACE
Sbjct:   378 LVH--DSDP-----DYIVMQFGRTSDDIFTMDFRYPLCAFQAFAIALSSFDGKLACE 427

GO:0005634 "nucleus" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8VY21	TLP3_ARATH	No assigned EC number	0.7725	0.9662	0.5640	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_fgenesh4_pg.C_LG_VIII1741 SubName- Full=Putative uncharacterized protein; (392 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	237
pfam01167	243	pfam01167, Tub, Tub family	1e-83

>gnl|CDD|216339 pfam01167, Tub, Tub family

 Score =  248 bits (636), Expect = 1e-83
 Identities = 96/211 (45%), Positives = 119/211 (56%), Gaps = 43/211 (20%)

Query: 21  RSNFLGTKFIVYDGQPPHAGAKMTRSRSTRLANLKQVSPRIPFGNYSVAHISYELNVLGS 80
           RSNFLGTKF V+D       A++             V+P++  G   +A + YE NVLG 
Sbjct: 76  RSNFLGTKFTVFDNGVNPQKARL-------------VTPKVASGRQELAAVCYETNVLGF 122

Query: 81  RGPRRMQCVMDSIPASAIESGGVAPTQTEFLFSNADSFPSIPFFRSKSNRSEKFLSGPLA 140
           RGPR+M  +M  IP+S        P Q                     N  E  LS    
Sbjct: 123 RGPRKMTVIMPGIPSSHE----RVPIQPL-------------------NDQESLLSRWQN 159

Query: 141 CQKDGALVLRNKAPRWHEQLQCWCLNFHGRVTVASVKNFQLVASPENGPAGLEHEKIILQ 200
             K+  LVL NKAPRW++QLQ + LNFHGRVT ASVKNFQ+V +        + + I+LQ
Sbjct: 160 KNKESLLVLHNKAPRWNDQLQSYVLNFHGRVTQASVKNFQIVHAS-------DPDYIVLQ 212

Query: 201 FGKVGKDLFTMDYRYPISAFQAFAICLSSFD 231
           FG+V KD+FTMDYRYP+SAFQAFAICLSSFD
Sbjct: 213 FGRVAKDMFTMDYRYPLSAFQAFAICLSSFD 243

Length = 243

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	237
KOG2502	355	consensus Tub family proteins [General function pr	100.0
PF01167	246	Tub: Tub family; InterPro: IPR000007 Tubby, an aut	100.0
KOG2503	565	consensus Tubby superfamily protein TULP4 [General	99.83
PF12043	346	DUF3527: Domain of unknown function (DUF3527); Int	97.28

>KOG2502 consensus Tub family proteins [General function prediction only]

Probab=100.00  E-value=1.6e-80  Score=570.93  Aligned_cols=190  Identities=57%  Similarity=0.874  Sum_probs=169.3

Q ss_pred             CCCccccccCCCceeeCcEEeeeecccEEEEeCCCCCCCCCccccccccccccccccCCCCCCCceeEEEEEeecccccC
Q 026549            1 MCFKVVSRGYNFMLVCFFLARSNFLGTKFIVYDGQPPHAGAKMTRSRSTRLANLKQVSPRIPFGNYSVAHISYELNVLGS   80 (237)
Q Consensus         1 l~~~d~sr~s~~yv~~~GKLRSNflGTkF~iYD~g~~~~~~~~~~~~~~~~~~~~~~spr~~~~~~ela~I~Ye~Nvlg~   80 (237)
                      ||++||||++++||   ||||||||||||||||+|.++...          ++      ++|+++++||+|+||+||||+
T Consensus       166 ~d~~~lSr~~~~yv---GklRSN~lGTKFtVyD~g~~~~r~----------~~------~~~~~~~~la~V~Ye~NVLg~  226 (355)
T KOG2502|consen  166 LDPTDLSRGSESYV---GKLRSNLLGTKFTVYDNGVNPSRR----------FN------KVPSGRQELAAVIYETNVLGF  226 (355)
T ss_pred             ccccccccCcccee---eeeecccccceEEEecCCCCcccc----------cc------cCCcccceeeEEEEeeccccc
Confidence            68999999999999   999999999999999997654221          22      578899999999999999999


Q ss_pred             CCCceeEEeecCCCcccccCCCCCCccceeccCCCCCCCCcccccccCcccccccCCccccCCCceeEeeeCCccccccC
Q 026549           81 RGPRRMQCVMDSIPASAIESGGVAPTQTEFLFSNADSFPSIPFFRSKSNRSEKFLSGPLACQKDGALVLRNKAPRWHEQL  160 (237)
Q Consensus        81 rGPRkM~~~i~~ip~s~~~~gg~~p~~~~~~~~~~~~~~~~~~~k~k~~~~~~~~~~~~~~~~~~~~~l~nk~P~w~~~~  160 (237)
                      ||||||+|+||.||.++  +++++|.|++..+.                   +++.++++..++++++|+||.|+|||++
T Consensus       227 rGPRrM~~im~~i~~s~--~~~~v~~q~~~~~~-------------------~~l~r~~~k~~e~~lvL~NK~P~wne~~  285 (355)
T KOG2502|consen  227 RGPRRMTVIMPGISPSA--PGGRVPVQPENDHP-------------------SLLFRSQNKDKEGLLVLKNKTPRWNEET  285 (355)
T ss_pred             cCCceeEEeccCCCCCC--CCCccccccccccc-------------------chhhhccccCcccceEeecCCCcccccc
Confidence            99999999999999987  89999888754332                   1223334444689999999999999999


Q ss_pred             ceEEeccCCceeccccceeEEEeCCCCCCCCCCCCeEEEEeeccCCCeeEEEccCCCCHHHHHHHHHHhCccccccC
Q 026549          161 QCWCLNFHGRVTVASVKNFQLVASPENGPAGLEHEKIILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFDTKIACE  237 (237)
Q Consensus       161 ~~y~LnF~GRv~~aSvKNFQLv~~~~~~~~~~~~~~ivlqfGKv~~~~F~lD~~yPlS~~QAFaiaLssfd~K~aCe  237 (237)
                      ||||||||||||+|||||||||+..       ++++|||||||||||+|||||+||||+||||||||||||+|||||
T Consensus       286 q~~~LNF~GRVT~ASVKNFQLv~~~-------~p~~iiLQFGrV~kD~FTmDYrYPlSa~QAFaIcLSSFdtKlaCe  355 (355)
T KOG2502|consen  286 QSYCLNFHGRVTQASVKNFQLVHAL-------DPEYIILQFGRVGKDVFTMDYRYPLSAFQAFAICLSSFDTKLACE  355 (355)
T ss_pred             ceEEEecCCeEEEeeecceEEeccC-------CCCEEEEEeeeeccceeeecccCccHHHHHHHHHHHhccccccCC
Confidence            9999999999999999999999975       569999999999999999999999999999999999999999998

>PF01167 Tub: Tub family; InterPro: IPR000007 Tubby, an autosomal recessive mutation, mapping to mouse chromosome 7, was recently found to be the result of a splicing defect in a novel gene with unknown function

Probab=100.00  E-value=1.1e-67  Score=470.99  Aligned_cols=190  Identities=54%  Similarity=0.827  Sum_probs=141.4

Q ss_pred             CCCccccccCCCceeeCcEEeeeecccEEEEeCCCCCCCCCccccccccccccccccCCCCCCCceeEEEEEeecccccC
Q 026549            1 MCFKVVSRGYNFMLVCFFLARSNFLGTKFIVYDGQPPHAGAKMTRSRSTRLANLKQVSPRIPFGNYSVAHISYELNVLGS   80 (237)
Q Consensus         1 l~~~d~sr~s~~yv~~~GKLRSNflGTkF~iYD~g~~~~~~~~~~~~~~~~~~~~~~spr~~~~~~ela~I~Ye~Nvlg~   80 (237)
                      ||++||||++++||   |||||||+||+|+|||+|.+++.+..             .+|+.+..|+|||+|.|++||||+
T Consensus        57 ~~~~dlsr~s~~yv---GKLrsNf~GT~F~iyD~g~~~~~~~~-------------~~~~~~~~r~eLa~V~Ye~nvlg~  120 (246)
T PF01167_consen   57 LDPDDLSRSSNNYV---GKLRSNFLGTEFTIYDNGPNPKKSKS-------------ISPREPQIRRELAAVSYETNVLGS  120 (246)
T ss_dssp             SSHHHHCTT---ES---EEEEE-TTSSEEEEEESSB-CCCSTC-------------CTSCCSSB--EEEEEEEEE-SSST
T ss_pred             cCCCccccCCCcee---eeeccccceeEEEEECCCCCCccccc-------------cCcCcCcCcceEEEEEEEeccccc
Confidence            68899999999999   99999999999999999998876532             246677789999999999999999


Q ss_pred             CCCceeEEeecCCCcccccCCCCCCccceeccCCCCCCCCcccccccCcccccccCCccccCCCceeEeeeCCccccccC
Q 026549           81 RGPRRMQCVMDSIPASAIESGGVAPTQTEFLFSNADSFPSIPFFRSKSNRSEKFLSGPLACQKDGALVLRNKAPRWHEQL  160 (237)
Q Consensus        81 rGPRkM~~~i~~ip~s~~~~gg~~p~~~~~~~~~~~~~~~~~~~k~k~~~~~~~~~~~~~~~~~~~~~l~nk~P~w~~~~  160 (237)
                      ||||||+|+||+|+.+..++++..|.++.     .             ...+++.........+++++|+||+|+||+++
T Consensus       121 rGPRkM~v~ip~i~~~~~~~~~~~~~~p~-----~-------------~~~~~~~~~~~~~~~~~~~~l~~k~P~w~~~~  182 (246)
T PF01167_consen  121 RGPRKMTVVIPSIPSSGQESGGRVPFQPL-----N-------------QEKDSLLSRFQNKKKDELIVLKNKPPRWNEEL  182 (246)
T ss_dssp             TSSEEEEEEEE-B-TTS-----B-----S-----S--------------CCCSHHHHHHCT-TTSEEEEEE---EEETTT
T ss_pred             cCCcEEEEEecCCCccccccceeeeeecc-----c-------------cccccccccccccCCcceEEEecCCCcEeccC
Confidence            99999999999998877766665543311     0             01111122222345679999999999999999


Q ss_pred             ceEEeccCCceeccccceeEEEeCCCCCCCCCCCCeEEEEeeccCCCeeEEEccCCCCHHHHHHHHHHhCc
Q 026549          161 QCWCLNFHGRVTVASVKNFQLVASPENGPAGLEHEKIILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFD  231 (237)
Q Consensus       161 ~~y~LnF~GRv~~aSvKNFQLv~~~~~~~~~~~~~~ivlqfGKv~~~~F~lD~~yPlS~~QAFaiaLssfd  231 (237)
                      ++|+|||+|||++|||||||||+++       +++++||||||+++|.|+|||+|||||+|||||||||||
T Consensus       183 ~~~~l~F~gRv~~~SvKNFql~~~~-------~~~~~~lqfGk~~~~~f~~d~~~Pls~~qAF~i~lssfd  246 (246)
T PF01167_consen  183 QSYVLNFNGRVTVASVKNFQLVHPS-------DPDRIVLQFGKVGKDVFTMDFRYPLSPLQAFAIALSSFD  246 (246)
T ss_dssp             TEEEEEETTSECC-BTTEEEEEBTT-------BTTSESEEEEEEETTEEEEEEETT-BHHHHHHHHHHHHH
T ss_pred             CeEEeccCCeEeccccceeEEEccC-------CCCeEEEEEEEecCCEEEEEecCCCCHHHHHHHHHhcCC
Confidence            9999999999999999999999974       678999999999999999999999999999999999997

This mutation maps to the tub gene [, ]. The mouse tubby mutation is the cause of maturity-onset obesity, insulin resistance and sensory deficits. By contrast with the rapid juvenile-onset weight gain seen in diabetes (db) and obese (ob) mice, obesity in tubby mice develops gradually, and strongly resembles the late-onset obesity observed in the human population. Excessive deposition of adipose tissue culminates in a two-fold increase of body weight. Tubby mice also suffer retinal degeneration and neurosensory hearing loss. The tripartite character of the tubby phenotype is highly similar to human obesity syndromes, such as Alstrom and Bardet-Biedl. Although these phenotypes indicate a vital role for tubby proteins, no biochemical function has yet been ascribed to any family member [], although it has been suggested that the phenotypic features of tubby mice may be the result of cellular apoptosis triggered by expression of the mutated tub gene. TUB is the founding-member of the tubby-like proteins, the TULPs. TULPs are found in multicellular organisms from both the plant and animal kingdoms. Ablation of members of this protein family cause disease phenotypes that are indicative of their importance in nervous-system function and development []. Mammalian TUB is a hydrophilic protein of ~500 residues. The N-terminal (IPR005398 from INTERPRO) portion of the protein is conserved neither in length nor sequence, but, in TUB, contains the nuclear localisation signal and may have transcriptional-activation activity. The C-terminal 250 residues are highly conserved. The C-terminal extremity contains a cysteine residue that might play an important role in the normal functioning of these proteins. The crystal structure of the C-terminal core domain from mouse tubby has been determined to 1.9A resolution. This domain is arranged as a 12-stranded, all anti-parallel, closed beta-barrel that surrounds a central alpha helix, (which is at the extreme carboxyl terminus of the protein) that forms most of the hydrophobic core. Structural analyses suggest that TULPs constitute a unique family of bipartite transcription factors [].; PDB: 3C5N_B 2FIM_A 1I7E_A 1C8Z_A 1S31_A.

>KOG2503 consensus Tubby superfamily protein TULP4 [General function prediction only]

Probab=99.83  E-value=1.9e-21  Score=186.14  Aligned_cols=77  Identities=43%  Similarity=0.740  Sum_probs=72.2

Q ss_pred             ceeEeeeCCccccccCceEEeccCCceeccccceeEEEeCCCCCCCCCCCCeEEEEeeccCCCeeEEEccCCCCHHHHHH
Q 026549          145 GALVLRNKAPRWHEQLQCWCLNFHGRVTVASVKNFQLVASPENGPAGLEHEKIILQFGKVGKDLFTMDYRYPISAFQAFA  224 (237)
Q Consensus       145 ~~~~l~nk~P~w~~~~~~y~LnF~GRv~~aSvKNFQLv~~~~~~~~~~~~~~ivlqfGKv~~~~F~lD~~yPlS~~QAFa  224 (237)
                      ++.++.||+|.|||++|-|+|||.||||+.|.||||+-..          .+.|||||+|+.+.|++||+||+|+.||||
T Consensus       485 R~~vmtnK~p~wne~tqVyqlDfgGrVtqesakNfQIel~----------gkQvmqFgRidg~aytldfqypfSa~QaFa  554 (565)
T KOG2503|consen  485 RCEVMTNKPPAWNEHTQVYQLDFGGRVTQESAKNFQIELF----------GKQVMQFGRIDGPAYTLDFQYPFSAGQAFA  554 (565)
T ss_pred             eEEEeecCCccccccceEEEeccCCccchhhhccceEeec----------chhhheeccccCCcccCCCCCchHHHHHHH
Confidence            5669999999999999999999999999999999999764          578999999999999999999999999999


Q ss_pred             HHHHhCc
Q 026549          225 ICLSSFD  231 (237)
Q Consensus       225 iaLssfd  231 (237)
                      +||++.-
T Consensus       555 valanvt  561 (565)
T KOG2503|consen  555 VALANVT  561 (565)
T ss_pred             HHHhhhh
Confidence            9999753

>PF12043 DUF3527: Domain of unknown function (DUF3527); InterPro: IPR021916 This presumed domain is functionally uncharacterised

Probab=97.28  E-value=0.00033  Score=66.15  Aligned_cols=58  Identities=21%  Similarity=0.452  Sum_probs=47.2

Q ss_pred             CceeccccceeEEEeCCCCCCCCCCCCeEEEEeeccCCCeeEEEccCCCCHHHHHHHHHHhCcc
Q 026549          169 GRVTVASVKNFQLVASPENGPAGLEHEKIILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFDT  232 (237)
Q Consensus       169 GRv~~aSvKNFQLv~~~~~~~~~~~~~~ivlqfGKv~~~~F~lD~~yPlS~~QAFaiaLssfd~  232 (237)
                      .+...+.-+=|.|....      ..++..+|-+--+.++.|.+||+..||+||||+||++-.+.
T Consensus       287 ~~~~~~~~~~feLf~QG------~~~~~P~~sm~~v~~G~Y~V~F~s~lS~LQAFSiciA~lh~  344 (346)
T PF12043_consen  287 SSSSKESSHPFELFVQG------SKEEDPAFSMVNVKEGLYSVEFHSSLSPLQAFSICIAVLHS  344 (346)
T ss_pred             cccccccCCceeeeecc------cccCCCceEEEEccCCeEEEEecCcchHHHHHHHhheeeec
Confidence            45555677778887753      23344899999999999999999999999999999987664

This domain is found in eukaryotes. This domain is about 120 amino acids in length. This domain has a conserved CDCGGWD sequence motif.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	237
1s31_A	273	Crystal Structure Analysis Of The Human Tub Protein		7e-32
2fim_A	276	Structure Of The C-Terminal Domain Of Human Tubby-L		2e-31
1c8z_A	265	C-Terminal Domain Of Mouse Brain Tubby Protein Leng		2e-31
1i7e_A	265	C-Terminal Domain Of Mouse Brain Tubby Protein Boun		4e-31
3c5n_A	246	Structure Of Human Tulp1 In Complex With Ip3 Length		1e-28

>pdb|1S31|A Chain A, Crystal Structure Analysis Of The Human Tub Protein (isoform A) Spanning Residues 289 Through 561 Length = 273

Iteration: 1
 Score =  133 bits (335), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 83/220 (37%), Positives = 113/220 (51%), Gaps = 49/220 (22%)
Query: 21  RSNFLGTKFIVYD-GQPPHAGAKMTRSRSTRLANLKQVSPRIPFGNYSVAHISYELNVLG 79
           RSN +GTKF VYD G  P   +  T    T    L+Q           +A + YE NVLG
Sbjct: 100 RSNLMGTKFTVYDNGVNPQKASSSTLESGT----LRQ----------ELAAVCYETNVLG 145
Query: 80  SRGPRRMQCVMDSIPASAI--ESGGVAPTQTEFLFSNADSFPSIPFFRSKSNRSEKFLSG 137
            +GPR+M  +   +P   +  E   + P                       N  E  L+ 
Sbjct: 146 FKGPRKMSVI---VPGMNMVHERVSIRP----------------------RNEHETLLAR 180
Query: 138 PLACQKDGALVLRNKAPRWHEQLQCWCLNFHGRVTVASVKNFQLVASPENGPAGLEHEKI 197
                 +  + L+NK P W++  Q + LNFHGRVT ASVKNFQ++        G + + I
Sbjct: 181 WQNKNTESIIELQNKTPVWNDDTQSYVLNFHGRVTQASVKNFQIIH-------GNDPDYI 233
Query: 198 ILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFDTKIACE 237
           ++QFG+V +D+FTMDY YP+ A QAFAI LSSFD+K+ACE
Sbjct: 234 VMQFGRVAEDVFTMDYNYPLCALQAFAIALSSFDSKLACE 273

>pdb|2FIM|A Chain A, Structure Of The C-Terminal Domain Of Human Tubby-Like Protein 1 Length = 276

Iteration: 1
 Score =  132 bits (332), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 87/218 (39%), Positives = 114/218 (52%), Gaps = 47/218 (21%)
Query: 21  RSNFLGTKFIVYD-GQPPHAGAKMTRSRSTRLANLKQVSPRIPFGNYSVAHISYELNVLG 79
           RSN LG +F V+D GQ P  G       ST +A+L+Q           +A + YE NVLG
Sbjct: 105 RSNLLGNRFTVFDNGQNPQRGY------STNVASLRQ----------ELAAVIYETNVLG 148
Query: 80  SRGPRRMQCVMDSIPASAIESGGVAPTQTEFLFSNADSFPSIPFFRSKSNRSEKFLSGPL 139
            RGPRRM  +   IP  + E+               +  P  P      N S+  L    
Sbjct: 149 FRGPRRMTVI---IPGMSAEN---------------ERVPIRP-----RNASDGLLVRWQ 185
Query: 140 ACQKDGALVLRNKAPRWHEQLQCWCLNFHGRVTVASVKNFQLVASPENGPAGLEHEKIIL 199
               +  + L NK P W++    + LNF GRVT ASVKNFQ+V + +        + I+L
Sbjct: 186 NKTLESLIELHNKPPVWNDDSGSYTLNFQGRVTQASVKNFQIVHADD-------PDYIVL 238
Query: 200 QFGKVGKDLFTMDYRYPISAFQAFAICLSSFDTKIACE 237
           QFG+V +D FT+DYRYP+ A QAFAI LSSFD K+ACE
Sbjct: 239 QFGRVAEDAFTLDYRYPLCALQAFAIALSSFDGKLACE 276

>pdb|1C8Z|A Chain A, C-Terminal Domain Of Mouse Brain Tubby Protein Length = 265

Iteration: 1
 Score =  132 bits (332), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 83/220 (37%), Positives = 113/220 (51%), Gaps = 49/220 (22%)
Query: 21  RSNFLGTKFIVYD-GQPPHAGAKMTRSRSTRLANLKQVSPRIPFGNYSVAHISYELNVLG 79
           RSN +GTKF VYD G  P   +  T    T    L+Q           +A + YE NVLG
Sbjct: 92  RSNLMGTKFTVYDNGVNPQKASSSTLESGT----LRQ----------ELAAVCYETNVLG 137
Query: 80  SRGPRRMQCVMDSIPASAI--ESGGVAPTQTEFLFSNADSFPSIPFFRSKSNRSEKFLSG 137
            +GPR+M  +   +P   +  E   + P                       N  E  L+ 
Sbjct: 138 FKGPRKMSVI---VPGMNMVHERVCIRP----------------------RNEHETLLAR 172
Query: 138 PLACQKDGALVLRNKAPRWHEQLQCWCLNFHGRVTVASVKNFQLVASPENGPAGLEHEKI 197
                 +  + L+NK P W++  Q + LNFHGRVT ASVKNFQ++        G + + I
Sbjct: 173 WQNKNTESIIELQNKTPVWNDDTQSYVLNFHGRVTQASVKNFQIIH-------GNDPDYI 225
Query: 198 ILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFDTKIACE 237
           ++QFG+V +D+FTMDY YP+ A QAFAI LSSFD+K+ACE
Sbjct: 226 VMQFGRVAEDVFTMDYNYPLCALQAFAIALSSFDSKLACE 265

>pdb|1I7E|A Chain A, C-Terminal Domain Of Mouse Brain Tubby Protein Bound To Phosphatidylinositol 4,5-Bis-Phosphate Length = 265

Iteration: 1
 Score =  131 bits (329), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 82/220 (37%), Positives = 113/220 (51%), Gaps = 49/220 (22%)
Query: 21  RSNFLGTKFIVYD-GQPPHAGAKMTRSRSTRLANLKQVSPRIPFGNYSVAHISYELNVLG 79
           RSN +GTKF VYD G  P   +  T    T    L+Q           +A + YE NVLG
Sbjct: 92  RSNLMGTKFTVYDNGVNPQKASSSTLESGT----LRQ----------ELAAVCYETNVLG 137
Query: 80  SRGPRRMQCVMDSIPASAI--ESGGVAPTQTEFLFSNADSFPSIPFFRSKSNRSEKFLSG 137
            +GPR+M  +   +P   +  E   + P                       N  E  L+ 
Sbjct: 138 FKGPRKMSVI---VPGMNMVHERVCIRP----------------------RNEHETLLAR 172
Query: 138 PLACQKDGALVLRNKAPRWHEQLQCWCLNFHGRVTVASVKNFQLVASPENGPAGLEHEKI 197
                 +  + L+NK P W++  + + LNFHGRVT ASVKNFQ++        G + + I
Sbjct: 173 WQNKNTESIIELQNKTPVWNDDTESYVLNFHGRVTQASVKNFQIIH-------GNDPDYI 225
Query: 198 ILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFDTKIACE 237
           ++QFG+V +D+FTMDY YP+ A QAFAI LSSFD+K+ACE
Sbjct: 226 VMQFGRVAEDVFTMDYNYPLCALQAFAIALSSFDSKLACE 265

>pdb|3C5N|A Chain A, Structure Of Human Tulp1 In Complex With Ip3 Length = 246

Iteration: 1
 Score =  123 bits (308), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 84/212 (39%), Positives = 109/212 (51%), Gaps = 47/212 (22%)
Query: 21  RSNFLGTKFIVYD-GQPPHAGAKMTRSRSTRLANLKQVSPRIPFGNYSVAHISYELNVLG 79
           RSN LG +F V+D GQ P  G       ST +A+L+Q           +A + YE NVLG
Sbjct: 81  RSNLLGNRFTVFDNGQNPQRGY------STNVASLRQ----------ELAAVIYETNVLG 124
Query: 80  SRGPRRMQCVMDSIPASAIESGGVAPTQTEFLFSNADSFPSIPFFRSKSNRSEKFLSGPL 139
            RGPRRM  +   IP  + E+  V               P  P      N S+  L    
Sbjct: 125 FRGPRRMTVI---IPGMSAENERV---------------PIRP-----RNASDGLLVRWQ 161
Query: 140 ACQKDGALVLRNKAPRWHEQLQCWCLNFHGRVTVASVKNFQLVASPENGPAGLEHEKIIL 199
               +  + L NK P W++    + LNF GRVT ASVKNFQ+V + +        + I+L
Sbjct: 162 NKTLESLIELHNKPPVWNDDSGSYTLNFQGRVTQASVKNFQIVHADD-------PDYIVL 214
Query: 200 QFGKVGKDLFTMDYRYPISAFQAFAICLSSFD 231
           QFG+V +D FT+DYRYP+ A QAFAI LSSFD
Sbjct: 215 QFGRVAEDAFTLDYRYPLCALQAFAIALSSFD 246

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	237
2fim_A	276	Tubby related protein 1; tubby filled-barrel, beta	2e-61
3c5n_A	246	Tubby-related protein 1; inositol, signalling, alt	1e-57

>2fim_A Tubby related protein 1; tubby filled-barrel, beta-barrel, filled-beta-roll, 12-stran barrel, helix-filled-barrel, retinitis pigmentosa; HET: 3DP; 1.90A {Homo sapiens} PDB: 1s31_A* Length = 276

 Score =  192 bits (489), Expect = 2e-61
 Identities = 77/217 (35%), Positives = 103/217 (47%), Gaps = 45/217 (20%)

Query: 21  RSNFLGTKFIVYDGQPPHAGAKMTRSRSTRLANLKQVSPRIPFGNYSVAHISYELNVLGS 80
           RSN LG +F V+D                     +  S  +      +A + YE NVLG 
Sbjct: 105 RSNLLGNRFTVFDNGQNPQ---------------RGYSTNVASLRQELAAVIYETNVLGF 149

Query: 81  RGPRRMQCVMDSIPASAIESGGVAPTQTEFLFSNADSFPSIPFFRSKSNRSEKFLSGPLA 140
           RGPRRM  ++  + A                    +  P  P      N S+  L     
Sbjct: 150 RGPRRMTVIIPGMSA------------------ENERVPIRP-----RNASDGLLVRWQN 186

Query: 141 CQKDGALVLRNKAPRWHEQLQCWCLNFHGRVTVASVKNFQLVASPENGPAGLEHEKIILQ 200
              +  + L NK P W++    + LNF GRVT ASVKNFQ+V + +        + I+LQ
Sbjct: 187 KTLESLIELHNKPPVWNDDSGSYTLNFQGRVTQASVKNFQIVHADD-------PDYIVLQ 239

Query: 201 FGKVGKDLFTMDYRYPISAFQAFAICLSSFDTKIACE 237
           FG+V +D FT+DYRYP+ A QAFAI LSSFD K+ACE
Sbjct: 240 FGRVAEDAFTLDYRYPLCALQAFAIALSSFDGKLACE 276

>3c5n_A Tubby-related protein 1; inositol, signalling, alternative splicing, disease mutation, polymorphism, retinitis pigmentosa, sensory transduction; HET: I3P; 1.80A {Homo sapiens} PDB: 1i7e_A* 1c8z_A Length = 246

 Score =  182 bits (462), Expect = 1e-57
 Identities = 70/211 (33%), Positives = 100/211 (47%), Gaps = 45/211 (21%)

Query: 21  RSNFLGTKFIVYDGQPPHAGAKMTRSRSTRLANLKQVSPRIPFGNYSVAHISYELNVLGS 80
           RSN LG +F V+D                     +  S  +      +A + YE NVLG 
Sbjct: 81  RSNLLGNRFTVFDNGQNPQ---------------RGYSTNVASLRQELAAVIYETNVLGF 125

Query: 81  RGPRRMQCVMDSIPASAIESGGVAPTQTEFLFSNADSFPSIPFFRSKSNRSEKFLSGPLA 140
           RGPRRM  ++  + A           +   +     S   +  +++K+            
Sbjct: 126 RGPRRMTVIIPGMSA---------ENERVPIRPRNASDGLLVRWQNKT------------ 164

Query: 141 CQKDGALVLRNKAPRWHEQLQCWCLNFHGRVTVASVKNFQLVASPENGPAGLEHEKIILQ 200
              +  + L NK P W++    + LNF GRVT ASVKNFQ+V + +        + I+LQ
Sbjct: 165 --LESLIELHNKPPVWNDDSGSYTLNFQGRVTQASVKNFQIVHADD-------PDYIVLQ 215

Query: 201 FGKVGKDLFTMDYRYPISAFQAFAICLSSFD 231
           FG+V +D FT+DYRYP+ A QAFAI LSSFD
Sbjct: 216 FGRVAEDAFTLDYRYPLCALQAFAIALSSFD 246

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	237
2fim_A	276	Tubby related protein 1; tubby filled-barrel, beta	100.0
3c5n_A	246	Tubby-related protein 1; inositol, signalling, alt	100.0

>2fim_A Tubby related protein 1; tubby filled-barrel, beta-barrel, filled-beta-roll, 12-stran barrel, helix-filled-barrel, retinitis pigmentosa; HET: 3DP; 1.90A {Homo sapiens} PDB: 1s31_A*

Probab=100.00  E-value=1.8e-72  Score=507.91  Aligned_cols=189  Identities=41%  Similarity=0.653  Sum_probs=139.3

Q ss_pred             CCCccccccCCCceeeCcEEeeeecccEEEEeCCCCCCCCCccccccccccccccccCCCCCCCceeEEEEEeecccccC
Q 026549            1 MCFKVVSRGYNFMLVCFFLARSNFLGTKFIVYDGQPPHAGAKMTRSRSTRLANLKQVSPRIPFGNYSVAHISYELNVLGS   80 (237)
Q Consensus         1 l~~~d~sr~s~~yv~~~GKLRSNflGTkF~iYD~g~~~~~~~~~~~~~~~~~~~~~~spr~~~~~~ela~I~Ye~Nvlg~   80 (237)
                      +|++||||++++||   |||||||+||+|+|||+|.+++.+               .+|.++.+|+|||+|.||+||||+
T Consensus        88 ~d~~dlsr~s~~yv---GKLrSNflGtkF~iyD~G~~p~~~---------------~s~~~~~~r~el~~V~Ye~nvlg~  149 (276)
T 2fim_A           88 IDPTNLSRGGENFI---GKLRSNLLGNRFTVFDNGQNPQRG---------------YSTNVASLRQELAAVIYETNVLGF  149 (276)
T ss_dssp             SCTTC------CEE---EEEEECSSSSEEEEECSSBCGGGC---------------TTSCGGGBCCEEEEEEEC------
T ss_pred             ecchhcccCCceEE---EEEEEccCCCEEEEECCCCCcccc---------------cCcccccccEEEEEEEEEecccCC
Confidence            68999999999999   999999999999999999876432               245666788999999999999999


Q ss_pred             CCCceeEEeecCCCcccccCCCCCCccceeccCCCCCCCCcccccccCcccccccCCccccCCCceeEeeeCCccccccC
Q 026549           81 RGPRRMQCVMDSIPASAIESGGVAPTQTEFLFSNADSFPSIPFFRSKSNRSEKFLSGPLACQKDGALVLRNKAPRWHEQL  160 (237)
Q Consensus        81 rGPRkM~~~i~~ip~s~~~~gg~~p~~~~~~~~~~~~~~~~~~~k~k~~~~~~~~~~~~~~~~~~~~~l~nk~P~w~~~~  160 (237)
                      +|||+|+|+||.+.    ++|+..|.++                   ....++++.++++...+++++|+||+|+|||++
T Consensus       150 ~gPR~m~v~iP~~~----~~~~~~~~~p-------------------~~~~~~ll~~~~~~~~~~~~~l~nK~P~wne~~  206 (276)
T 2fim_A          150 RGPRRMTVIIPGMS----AENERVPIRP-------------------RNASDGLLVRWQNKTLESLIELHNKPPVWNDDS  206 (276)
T ss_dssp             ---CCEEEEEECBC----TTSCBCCCCC-------------------SSTTCSHHHHHHHTCCTTEEEEEECCCEEETTT
T ss_pred             CCCeEEEEEecCcc----cCCCEecccC-------------------CCcccccchhhhccCCcceEeeeccCCcccccC
Confidence            99999999998642    2343333211                   111122233344455689999999999999999


Q ss_pred             ceEEeccCCceeccccceeEEEeCCCCCCCCCCCCeEEEEeeccCCCeeEEEccCCCCHHHHHHHHHHhCccccccC
Q 026549          161 QCWCLNFHGRVTVASVKNFQLVASPENGPAGLEHEKIILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFDTKIACE  237 (237)
Q Consensus       161 ~~y~LnF~GRv~~aSvKNFQLv~~~~~~~~~~~~~~ivlqfGKv~~~~F~lD~~yPlS~~QAFaiaLssfd~K~aCe  237 (237)
                      |||||||+||||+|||||||||+++       ++++||||||||++|+|+|||+|||||||||||||||||+|||||
T Consensus       207 ~~y~LnF~GRVt~aSvKNFQLv~~~-------d~~~ivlQFGKv~~d~FtmD~~yPlS~~QAFaI~LsSfd~Klace  276 (276)
T 2fim_A          207 GSYTLNFQGRVTQASVKNFQIVHAD-------DPDYIVLQFGRVAEDAFTLDYRYPLCALQAFAIALSSFDGKLACE  276 (276)
T ss_dssp             TEEECCCTTCCCSCCTTCEEEECTT-------CTTSCSEEEEEEETTEEEEEECTTCCHHHHHHHHHHTCC------
T ss_pred             CEEEEecCCeeeccccceEEEEecC-------CCCEEEEEEeecCCCeEEEEecCCCCHHHHHHHHHHhcccccccC
Confidence            9999999999999999999999974       578999999999999999999999999999999999999999998

>3c5n_A Tubby-related protein 1; inositol, signalling, alternative splicing, disease mutation, polymorphism, retinitis pigmentosa, sensory transduction; HET: I3P; 1.80A {Homo sapiens} PDB: 1i7e_A* 1c8z_A

Probab=100.00  E-value=1.9e-69  Score=481.38  Aligned_cols=183  Identities=40%  Similarity=0.634  Sum_probs=145.3

Q ss_pred             CCCccccccCCCceeeCcEEeeeecccEEEEeCCCCCCCCCccccccccccccccccCCCCCCCceeEEEEEeecccccC
Q 026549            1 MCFKVVSRGYNFMLVCFFLARSNFLGTKFIVYDGQPPHAGAKMTRSRSTRLANLKQVSPRIPFGNYSVAHISYELNVLGS   80 (237)
Q Consensus         1 l~~~d~sr~s~~yv~~~GKLRSNflGTkF~iYD~g~~~~~~~~~~~~~~~~~~~~~~spr~~~~~~ela~I~Ye~Nvlg~   80 (237)
                      ||++||||++++||   |||||||+||+|+|||+|.+++.+               .+|.++++|+|||+|.||+||||+
T Consensus        64 ~d~~dlsr~s~~yv---GKLrsNf~Gt~F~iyD~g~~p~~~---------------~s~~~~~~r~el~~v~Ye~n~l~~  125 (246)
T 3c5n_A           64 IDPTNLSRGGENFI---GKLRSNLLGNRFTVFDNGQNPQRG---------------YSTNVASLRQELAAVIYETNVLGF  125 (246)
T ss_dssp             SCTTC------CEE---EEEEECSSSSEEEEECSCBCGGGC---------------TTSCGGGBCCEEEEEEECCCCCC-
T ss_pred             eCccccccCCceEE---EEEEEccCCCEEEEECCCCCcccc---------------cCcccccccEEEEEEEEEecccCC
Confidence            68999999999999   999999999999999999876432               245666788999999999999999


Q ss_pred             CCCceeEEeecCCCcccccCCCCCCccceeccCCCCCCCCcccccccCcccccccCCccccCCCceeEeeeCCccccccC
Q 026549           81 RGPRRMQCVMDSIPASAIESGGVAPTQTEFLFSNADSFPSIPFFRSKSNRSEKFLSGPLACQKDGALVLRNKAPRWHEQL  160 (237)
Q Consensus        81 rGPRkM~~~i~~ip~s~~~~gg~~p~~~~~~~~~~~~~~~~~~~k~k~~~~~~~~~~~~~~~~~~~~~l~nk~P~w~~~~  160 (237)
                      +|||+|+|+||.+.    ++|+..|.++                   ....++++.++++...+++++|+||+|+|||++
T Consensus       126 ~gPR~m~v~iP~~~----~~~~~~~~~p-------------------~~~~~~~~~~~~~~~~~~~~~l~nK~P~w~e~~  182 (246)
T 3c5n_A          126 RGPRRMTVIIPGMS----AENERVPIRP-------------------RNASDGLLVRWQNKTLESLIELHNKPPVWNDDS  182 (246)
T ss_dssp             --CCCEEEEEECBC----TTSCBCCCCC-------------------SSTTSSHHHHHHHTCCTTEEEEEECCCEEETTT
T ss_pred             CCCeEEEEEecCcc----cCCCEeeccC-------------------CCccccchhhhhccCCcceEEEeccCCcccccC
Confidence            99999999997642    2344333211                   111122233344455689999999999999999


Q ss_pred             ceEEeccCCceeccccceeEEEeCCCCCCCCCCCCeEEEEeeccCCCeeEEEccCCCCHHHHHHHHHHhCc
Q 026549          161 QCWCLNFHGRVTVASVKNFQLVASPENGPAGLEHEKIILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFD  231 (237)
Q Consensus       161 ~~y~LnF~GRv~~aSvKNFQLv~~~~~~~~~~~~~~ivlqfGKv~~~~F~lD~~yPlS~~QAFaiaLssfd  231 (237)
                      |||||||+||||+|||||||||+++       ++++||||||||++|+|+|||+|||||||||||||||||
T Consensus       183 ~~y~LnF~GRvt~aSvKNFqLv~~~-------~~~~ivlqFGKv~~d~FtmD~~yPlS~~QAFaI~LsSfD  246 (246)
T 3c5n_A          183 GSYTLNFQGRVTQASVKNFQIVHAD-------DPDYIVLQFGRVAEDAFTLDYRYPLCALQAFAIALSSFD  246 (246)
T ss_dssp             TEEECCCTTSCCBCCTTCEEEEBTT-------BTTSCSEEEEEEETTEEEEEEETTCCHHHHHHHHHHTCC
T ss_pred             CEEEEecCCeeeccccceEEEEecC-------CCCEEEEEEEEecCCeEEEEecCCCCHHHHHHHHHHcCC
Confidence            9999999999999999999999974       578999999999999999999999999999999999998

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	237
d1c8za_	265	d.23.1.1 (A:) Transcriptional factor tubby, C-term	1e-68

>d1c8za_ d.23.1.1 (A:) Transcriptional factor tubby, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 265

class: Alpha and beta proteins (a+b)
fold: Tubby C-terminal domain-like
superfamily: Tubby C-terminal domain-like
family: Transcriptional factor tubby, C-terminal domain
domain: Transcriptional factor tubby, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  210 bits (535), Expect = 1e-68
 Identities = 74/217 (34%), Positives = 105/217 (48%), Gaps = 43/217 (19%)

Query: 21  RSNFLGTKFIVYDGQPPHAGAKMTRSRSTRLANLKQVSPRIPFGNYSVAHISYELNVLGS 80
           RSN +GTKF VYD       A                +         +A + YE NVLG 
Sbjct: 92  RSNLMGTKFTVYDNGVNPQKAS-------------SSTLESGTLRQELAAVCYETNVLGF 138

Query: 81  RGPRRMQCVMDSIPASAIESGGVAPTQTEFLFSNADSFPSIPFFRSKSNRSEKFLSGPLA 140
           +GPR+M  ++  +             + E L +           R ++            
Sbjct: 139 KGPRKMSVIVPGMNMVHERVCIRPRNEHETLLA-----------RWQNK----------- 176

Query: 141 CQKDGALVLRNKAPRWHEQLQCWCLNFHGRVTVASVKNFQLVASPENGPAGLEHEKIILQ 200
              +  + L+NK P W++  Q + LNFHGRVT ASVKNFQ++   +        + I++Q
Sbjct: 177 -NTESIIELQNKTPVWNDDTQSYVLNFHGRVTQASVKNFQIIHGND-------PDYIVMQ 228

Query: 201 FGKVGKDLFTMDYRYPISAFQAFAICLSSFDTKIACE 237
           FG+V +D+FTMDY YP+ A QAFAI LSSFD+K+ACE
Sbjct: 229 FGRVAEDVFTMDYNYPLCALQAFAIALSSFDSKLACE 265

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	237
d1c8za_	265	Transcriptional factor tubby, C-terminal domain {M	100.0

>d1c8za_ d.23.1.1 (A:) Transcriptional factor tubby, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Tubby C-terminal domain-like
superfamily: Tubby C-terminal domain-like
family: Transcriptional factor tubby, C-terminal domain
domain: Transcriptional factor tubby, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=2.7e-68  Score=476.25  Aligned_cols=191  Identities=40%  Similarity=0.634  Sum_probs=158.5

Q ss_pred             CCCccccccCCCceeeCcEEeeeecccEEEEeCCCCCCCCCccccccccccccccccCCCCCCCceeEEEEEeecccccC
Q 026549            1 MCFKVVSRGYNFMLVCFFLARSNFLGTKFIVYDGQPPHAGAKMTRSRSTRLANLKQVSPRIPFGNYSVAHISYELNVLGS   80 (237)
Q Consensus         1 l~~~d~sr~s~~yv~~~GKLRSNflGTkF~iYD~g~~~~~~~~~~~~~~~~~~~~~~spr~~~~~~ela~I~Ye~Nvlg~   80 (237)
                      +|++||||+|++||   |||||||+||+|+|||+|.+++.+...             +++..+.|+|||+|.||+||||+
T Consensus        75 ~~~~d~sr~s~~yv---GKlrSNflGTkF~iYD~G~~p~~~~~~-------------~~~~~~~r~ela~V~Ye~n~l~~  138 (265)
T d1c8za_          75 VDPTDLSRGGDSYI---GKLRSNLMGTKFTVYDNGVNPQKASSS-------------TLESGTLRQELAAVCYETNVLGF  138 (265)
T ss_dssp             SCHHHHTTTCCCCS---EEEEECTTSSEEEEECSSBCGGGCCTT-------------GGGSSSBCCEEEEEEECCCCSSC
T ss_pred             ccHHHhccccccee---EEeeccccCCEEEEecCCCCccccccc-------------ccccCccceeeeEEEEeeehhcc
Confidence            58899999999999   999999999999999999888665321             11223457899999999999999


Q ss_pred             CCCceeEEeecCCCcccccCCCCCCccceeccCCCCCCCCcccccccCcccccccCCccccCCCceeEeeeCCccccccC
Q 026549           81 RGPRRMQCVMDSIPASAIESGGVAPTQTEFLFSNADSFPSIPFFRSKSNRSEKFLSGPLACQKDGALVLRNKAPRWHEQL  160 (237)
Q Consensus        81 rGPRkM~~~i~~ip~s~~~~gg~~p~~~~~~~~~~~~~~~~~~~k~k~~~~~~~~~~~~~~~~~~~~~l~nk~P~w~~~~  160 (237)
                      ||||+|+|+||+++...-.    .  +  . .+.              ...++++..+.+..++++++|+||+|+||+++
T Consensus       139 rGPR~m~~~ip~~~~~~~~----~--~--~-~p~--------------~~~~~~~~~~~~~~~~~~~~l~~k~P~~n~~~  195 (265)
T d1c8za_         139 KGPRKMSVIVPGMNMVHER----V--C--I-RPR--------------NEHETLLARWQNKNTESIIELQNKTPVWNDDT  195 (265)
T ss_dssp             CSCCCEEEEEECBCTTSCB----C--C--C-CCS--------------STTSSHHHHHHTTCCSSEEEEEECCCEEETTT
T ss_pred             CCCceeEEEecCCCccccc----c--c--c-CCC--------------CcchhhhHHhhccCcccceEEecCCCeeeccC
Confidence            9999999999987642211    0  0  0 001              11222233334456689999999999999999


Q ss_pred             ceEEeccCCceeccccceeEEEeCCCCCCCCCCCCeEEEEeeccCCCeeEEEccCCCCHHHHHHHHHHhCccccccC
Q 026549          161 QCWCLNFHGRVTVASVKNFQLVASPENGPAGLEHEKIILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFDTKIACE  237 (237)
Q Consensus       161 ~~y~LnF~GRv~~aSvKNFQLv~~~~~~~~~~~~~~ivlqfGKv~~~~F~lD~~yPlS~~QAFaiaLssfd~K~aCe  237 (237)
                      ++|+|||+|||++|||||||||+++       +++++|||||||++|+|+|||+|||||+|||||||||||+|+|||
T Consensus       196 ~~~~LnF~gRv~~~SvKNFql~~~~-------~~~~~~lqfgKv~~~~f~~d~~~Pls~~qaF~i~lssf~~Klace  265 (265)
T d1c8za_         196 QSYVLNFHGRVTQASVKNFQIIHGN-------DPDYIVMQFGRVAEDVFTMDYNYPLCALQAFAIALSSFDSKLACE  265 (265)
T ss_dssp             TEEEEEETTEEEECBTTEEEEECTT-------CTTSCSEEEEEEETTEEEEEECTTCCHHHHHHHHHHHHHSSCCCC
T ss_pred             CEEEeccCCEEeccccceEEEEeCC-------CCCEEEEEEEEccCCeEEEEecCCCCHHHHHHHHHHHhccccccC
Confidence            9999999999999999999999864       578899999999999999999999999999999999999999998