Citrus Sinensis ID: 026573

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230------
Protein Sequence
MGSQVLPQALHWIPRSSTQCIPSKRLGFSTVLSRGPFVSHGVSVSAKPIGWNLGFFVNAQVKDSFVVRAEANEEAEANESIEEEQNEAVQAQGDVVVAVEAESEDKVEEEEVKAPRKPRVKLGDIMGILNKRAVEASESERPIPDIRTGDVVEIKLEVPENRRRLSIYKGIVMSRQNAGIHTTIRIRRIIAGIGVEIVFPLYSPNIKEIKVVSHRKVRRARLYYLRDKLPRLSTFK
Secondary Structure (PSIPRED)
ccccccccHHcccccccccccccccccccEEccccccccccccccccccccccccccccccccEEEEEEcccccccccccHHHHHHHHHHHccccHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHHHcccccccccccEEEEEEEEccccEEccEEEEEEEEEcccccccEEEEEEEEccEEEEEEcccccccccEEEEEEcccccccHHHHHHcccccccccc
Secondary Structure Prediction (SSPRO)
cccHHccccEEEcccccccccccccccEEccccccccccccccccEccccccccccccccccccEEEEEEccccccccccccccccccccccccccHHcccccHHccccHcccccccccccHHHHHHHHHHHHHHHHHHcccccccccccEEEEEEEEEcccEEEEEEEEEEEEEcccccccEEEEEEEEccccEEEEcccccccccEEEEEEcccEEEEEEEHHHcccccccEcc
Coil and Loop (DISEMBL)
mgsqvlpqalhwiprsstqcipskrlgfstvlsrgpfvshgvsvsakpigwnlgffvnaQVKDSFVVRAEANEEAEANESIEEEQNEAVQAQGDVVVAVEAesedkveeeevkaprkprvklgDIMGILNKRAveaseserpipdirtgdvveiklevpenrrrLSIYKGIVMsrqnagihtTIRIRRIIAGIGVeivfplyspnikeikvvSHRKVRRARLYYLRdklprlstfk
Flexible Loop (DISEMBL)
MGSQVLPQAlhwiprsstqcipSKRLGFSTVLSRGPFVSHGVSVSAKPIGWNLGFFVNAQVKDSFVVRAEANEEAEANESIEEEQNEAVQAQGDVVVAVEAesedkveeeevkaprkprvklgdimGILNKraveaseserpipdirtgdvveiklevpenrrrlsiykgivmsrqnagihttIRIRRIIAGIGVEIVFplyspnikeikvvshrkvrrarlyylrdklprlstfk
Low Complexity Region (SEG)
MGSQVLPQALHWIPRSSTQCIPSKRLGFSTVLSRGPFVSHGVSVSAKPIGWNLGFFVNAQVKDSFVVRaeaneeaeanesieeeqneavqaqgdvvvaveaesedkveeeevkAPRKPRVKLGDIMGILNKRAVEASESERPIPDIRTGDVVEIKLEVPENRRRLSIYKGIVMSRQNagihttirirriiagigVEIVFPLYSPNIKEIKVVSHRKVRRARLYYLRDKLPRLSTFK
Disordered region (IsUnstruct)
********ALHWIPRSSTQCIPSKRLGFSTVLSRGPFVSHGVSVSAKPIGWNLGFFVNAQVKDSFVVR********************************************************IMGIL****************IRTGDVVEIKLEVPENRRRLSIYKGIVMSRQNAGIHTTIRIRRIIAGIGVEIVFPLYSPNIKEIKVVSHRKVRRARLYYLRDK********
Disordered Region (DISOPRED)
****VLP*ALHWIP*************************************NLGF****QV***************************************************************IMGILNKRAVEASESERPIPDIRTGDVVEIKLEVPENRRRLSIYKGIVMSRQNAGIHTTIRIRRIIAGIGVEIVFPLYSPNIKEIKVVSHRKVRRARLYYLRDKLPR***F*
Disordered Region (DISEMBL)
MGSQVLPQALHWIPRSSTQCIPSKRLGFSTVLSRGPFVSHGVSVSAKPIGWNLGFFVNAQVKDSFVVRAEA*******************AQGDVVVAVE****************KPRVKLGDIMGILNKRAVEASESERPIPDIRTGDVVEIKLEVPENRRRLSIYKGIVMSRQNAGIHTTIRIRRIIAGIGVEIVFPLYSPNIKEIKVVSHRKVRRARLYYLRDKLPRLSTFK
Disordered Region (DISPRO)
***QVLPQALHWIPRSSTQCIPSKRLGFSTVLSR*******VSVSAKPIGWNLGFFVNAQVKDSFVVR*EA*******************************************PRKPRVKLGDIMGILNKRAVEASESERPIPDIRTGDVVEIKLEVPENRRRLSIYKGIVMSRQNAGIHTTIRIRRIIAGIGVEIVFPLYSPNIKEIKVVSHRKVRRARLYYLRDKL*R*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGSQVLPQALHWIPRSSTQCIPSKRLGFSTVLSRGPFVSHGVSVSAKPIGWNLGFFVNAQVKDSFVxxxxxxxxxxxxxxxxxxxxxxxxxxxxVVVAVEAESEDKVEEEEVKAPRKPRVKLGDIMGILNKRAVEASESERPIPDIRTGDVVEIKLEVPENRRRLSIYKGIVMSRQNAGIHTTIRIRRIIAGIGVEIVFPLYSPNIKEIKVVSHRKVRRARLYYLRDKLPRLSTFK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	236	2.2.26 [Sep-21-2011]
Q8W463	225	50S ribosomal protein L19	yes	no	0.923	0.968	0.639	9e-71
Q8RXX5	229	50S ribosomal protein L19	no	no	0.940	0.969	0.616	2e-66
P82413	233	50S ribosomal protein L19	N/A	no	0.949	0.961	0.583	1e-64
Q4JV09	113	50S ribosomal protein L19	yes	no	0.427	0.893	0.471	2e-19
A6TRS5	117	50S ribosomal protein L19	yes	no	0.440	0.888	0.415	4e-19
B1VG80	113	50S ribosomal protein L19	yes	no	0.461	0.964	0.428	6e-19
B8HT34	120	50S ribosomal protein L19	yes	no	0.444	0.875	0.433	6e-19
B2JA71	120	50S ribosomal protein L19	yes	no	0.444	0.875	0.424	2e-18
Q2VZV5	148	50S ribosomal protein L19	yes	no	0.444	0.709	0.424	6e-18
Q2RJV3	113	50S ribosomal protein L19	yes	no	0.440	0.920	0.428	7e-18

>sp|Q8W463|RK191_ARATH 50S ribosomal protein L19-1, chloroplastic OS=Arabidopsis thaliana GN=At4g17560 PE=2 SV=1

 Score =  266 bits (680), Expect = 9e-71,   Method: Compositional matrix adjust.
 Identities = 154/241 (63%), Positives = 179/241 (74%), Gaps = 23/241 (9%)

Query: 1   MGSQVLPQALHWIPRSSTQCIPSKRLGFSTVLSRGPFVSHGVSVSAKPI---GWNLGFFV 57
           M    LPQALH IPR+ TQ   SK LGFS+ LS  P +   +SVS   +   G   GF +
Sbjct: 3   MSFHRLPQALHMIPRNPTQS--SKNLGFSSFLSCAPSMDSRISVSRLSLNHPGSKFGFSL 60

Query: 58  NAQVKDSFVVRAE-ANEEAEANESIEEEQNEAVQAQGDVVVAVEAESEDKVEEE-EVKAP 115
           + +V++ F+VRAE  N EAE+ E                 VA  A++E  VEE  E K  
Sbjct: 61  DTRVRNEFIVRAEEGNTEAESEE----------------FVAEIADTEGNVEEVVEAKPT 104

Query: 116 RKPRVKLGDIMGILNKRAVEASESERPIPDIRTGDVVEIKLEVPENRRRLSIYKGIVMSR 175
           RKPR+KLGD+MGILN++A+E +E  RP+P+IRTGD+VEIKLEVPEN+RRLSIYKGIVMSR
Sbjct: 105 RKPRIKLGDVMGILNQKAIEVAEKVRPVPEIRTGDIVEIKLEVPENKRRLSIYKGIVMSR 164

Query: 176 QNAGIHTTIRIRRIIAGIGVEIVFPLYSPNIKEIKVVSHRKVRRARLYYLRDKLPRLSTF 235
           QNAGIHTTIRIRRIIAGIGVEIVFP+YSPNIKEIKVVSHRKVRRARLYYLRDKLPRLSTF
Sbjct: 165 QNAGIHTTIRIRRIIAGIGVEIVFPIYSPNIKEIKVVSHRKVRRARLYYLRDKLPRLSTF 224

Query: 236 K 236
           K
Sbjct: 225 K 225

Located at the 30S-50S ribosomal subunit interface and binds directly to 23S ribosomal RNA.
Arabidopsis thaliana (taxid: 3702)

>sp|Q8RXX5|RK192_ARATH 50S ribosomal protein L19-2, chloroplastic OS=Arabidopsis thaliana GN=At5g47190 PE=2 SV=1

 Score =  252 bits (643), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 146/237 (61%), Positives = 171/237 (72%), Gaps = 15/237 (6%)

Query: 3   SQVLPQALHWIPRSSTQCIPSKRLGFSTVLSRGPFVSHGVSVSAKPIGW---NLGFFVNA 59
           S +LPQALH IPR  T    SK LG S++L R   V+  +SVS   +     N GF +++
Sbjct: 5   SHLLPQALHMIPR--TPSFSSKNLGVSSILPRASSVNSRLSVSRVFLNHSSSNFGFAIDS 62

Query: 60  QVKDSFVVRAEANEEAEANESIEEEQNEAVQAQGDVVVAVEAESEDKVEEEEVKAPRKPR 119
           + +  F+ +AE + E E    +E            V    E E E  V  EE K P K R
Sbjct: 63  KKRKEFIAKAEESTEGETEAVVENA----------VETEAEGEGEATVAAEEAKPPWKTR 112

Query: 120 VKLGDIMGILNKRAVEASESERPIPDIRTGDVVEIKLEVPENRRRLSIYKGIVMSRQNAG 179
           VKLGDIMG+LNK+A+E +E+ RP+P +RTGD+VEIKLEVPEN+RRLSIYKGIVMSRQNAG
Sbjct: 113 VKLGDIMGLLNKKAIEVAETVRPVPGLRTGDIVEIKLEVPENKRRLSIYKGIVMSRQNAG 172

Query: 180 IHTTIRIRRIIAGIGVEIVFPLYSPNIKEIKVVSHRKVRRARLYYLRDKLPRLSTFK 236
           IHTTIRIRRIIAGIGVEIVFP+YSPNIKEIKVVSHRKVRRARLYYLRDKLPRLSTFK
Sbjct: 173 IHTTIRIRRIIAGIGVEIVFPIYSPNIKEIKVVSHRKVRRARLYYLRDKLPRLSTFK 229

Located at the 30S-50S ribosomal subunit interface and binds directly to 23S ribosomal RNA.

Arabidopsis thaliana (taxid: 3702)

>sp|P82413|RK19_SPIOL 50S ribosomal protein L19, chloroplastic OS=Spinacia oleracea GN=RPL19 PE=1 SV=2

 Score =  246 bits (627), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 143/245 (58%), Positives = 176/245 (71%), Gaps = 21/245 (8%)

Query: 1   MGSQVLPQALHWIPRS-STQCIP-SKRLGFSTVLSRGPFVSHGVS-------VSAKPIGW 51
           M S+VLPQAL  IP + S QC P  K+LGF    +R   +S            S+     
Sbjct: 1   MASKVLPQALLVIPSNHSLQCPPLKKQLGFPIDSNRRFSLSSNCRSNLMVSRASSNLFSS 60

Query: 52  NLGFFVNAQVKDSFVVRAEANEEAEANESIEEEQNEAVQAQGDVVVAVEAESEDKVEEEE 111
           N     +   ++SFVVR+EA + ++A       ++ AV A+ ++ V  EAE+E++     
Sbjct: 61  NFSSIFSFPARNSFVVRSEAEDSSDA-----PAESVAVVAEEELPVESEAEAEER----- 110

Query: 112 VKAPRKPRVKLGDIMGILNKRAVEASESERPIPDIRTGDVVEIKLEVPENRRRLSIYKGI 171
              PR+ RVKLGDIMGILNK+AV A+E  RP+P IRTGD+V+I+LEVPEN+RRLS+YKGI
Sbjct: 111 --PPRQQRVKLGDIMGILNKKAVHAAEELRPVPGIRTGDIVQIRLEVPENKRRLSVYKGI 168

Query: 172 VMSRQNAGIHTTIRIRRIIAGIGVEIVFPLYSPNIKEIKVVSHRKVRRARLYYLRDKLPR 231
           V+SRQNAGIHTTIRIRRIIAG+GVEIVFPLYSPNIKEIKVVSHRKVR+ARLYYLRDKLPR
Sbjct: 169 VISRQNAGIHTTIRIRRIIAGVGVEIVFPLYSPNIKEIKVVSHRKVRKARLYYLRDKLPR 228

Query: 232 LSTFK 236
           LSTFK
Sbjct: 229 LSTFK 233

Located at the 30S-50S ribosomal subunit interface and binds directly to 23S ribosomal RNA.

Spinacia oleracea (taxid: 3562)

>sp|Q4JV09|RL19_CORJK 50S ribosomal protein L19 OS=Corynebacterium jeikeium (strain K411) GN=rplS PE=3 SV=1

 Score = 95.9 bits (237), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 49/104 (47%), Positives = 75/104 (72%), Gaps = 3/104 (2%)

Query: 126 MGILNKRAVEASESERPIPDIRTGDVVEIKLEVPE-NRRRLSIYKGIVMSRQNAGIHTTI 184
           M IL+K  V+A++    IP+ R GD +++ ++V E ++ RL +++G+V+ RQN+GI  T 
Sbjct: 1   MHILDK--VDAAQLRDDIPEFRAGDTLDVHVKVIEGSKSRLQVFRGVVIRRQNSGIRETF 58

Query: 185 RIRRIIAGIGVEIVFPLYSPNIKEIKVVSHRKVRRARLYYLRDK 228
            IR++  GIGVE  FP++SPNI  I V+S  KVRRA+LYYLR++
Sbjct: 59  TIRKVSFGIGVERTFPVHSPNIDRIDVLSRGKVRRAKLYYLRER 102

This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.

Corynebacterium jeikeium (strain K411) (taxid: 306537)

>sp|A6TRS5|RL19_ALKMQ 50S ribosomal protein L19 OS=Alkaliphilus metalliredigens (strain QYMF) GN=rplS PE=3 SV=1

 Score = 95.1 bits (235), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 44/106 (41%), Positives = 75/106 (70%), Gaps = 2/106 (1%)

Query: 132 RAVEASESERPIPDIRTGDVVEIKLEVPE-NRRRLSIYKGIVMSRQNAGIHTTIRIRRII 190
           + ++A++ ++ I D  TGD +++ + + E  R R+ +++GIV+ RQ  GI  T  +RRI 
Sbjct: 5   KGIDAAQLKKDIIDFNTGDTIKVHVRIKEGTRERIQVFEGIVIKRQGGGIAETFTVRRIS 64

Query: 191 AGIGVEIVFPLYSPNIKEIKVVSHRKVRRARLYYLRDKLPRLSTFK 236
            G+GVE  FP++SP I++I++V H KVRRAR++YLRD++ + + FK
Sbjct: 65  YGVGVERTFPVHSPKIEKIEIVKHGKVRRARIFYLRDRIGK-AAFK 109

This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.

Alkaliphilus metalliredigens (strain QYMF) (taxid: 293826)

>sp|B1VG80|RL19_CORU7 50S ribosomal protein L19 OS=Corynebacterium urealyticum (strain ATCC 43042 / DSM 7109) GN=rplS PE=3 SV=1

 Score = 94.4 bits (233), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 48/112 (42%), Positives = 78/112 (69%), Gaps = 3/112 (2%)

Query: 126 MGILNKRAVEASESERPIPDIRTGDVVEIKLEVPE-NRRRLSIYKGIVMSRQNAGIHTTI 184
           M IL+K  V+A++    IP+ R GD V++ L+V E ++ R+ +++G+V+ RQ +GI  T 
Sbjct: 1   MHILDK--VDAAQLRDDIPEFRAGDTVDVHLKVIEGSKSRVQVFRGVVIKRQGSGIRETF 58

Query: 185 RIRRIIAGIGVEIVFPLYSPNIKEIKVVSHRKVRRARLYYLRDKLPRLSTFK 236
            +R++  GIGVE   P++SPNI +++V+S  KVRRA+LYYLRD+  + +  K
Sbjct: 59  TVRKVSFGIGVERTIPVHSPNIDKLEVLSRGKVRRAKLYYLRDRHGKAAKIK 110

This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.

Corynebacterium urealyticum (strain ATCC 43042 / DSM 7109) (taxid: 504474)

>sp|B8HT34|RL19_CYAP4 50S ribosomal protein L19 OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=rplS PE=3 SV=1

 Score = 94.4 bits (233), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 46/106 (43%), Positives = 76/106 (71%), Gaps = 1/106 (0%)

Query: 132 RAVEASESERPIPDIRTGDVVEIKLEVPE-NRRRLSIYKGIVMSRQNAGIHTTIRIRRII 190
           R++EA + +  +P+I  GD V++ + + E N+ R   Y+GIV++++N+GI+ TI +RRI 
Sbjct: 8   RSLEAEQLKSNLPEIHVGDTVKVGVIIQEGNKERTQPYEGIVIAKRNSGINATITVRRIF 67

Query: 191 AGIGVEIVFPLYSPNIKEIKVVSHRKVRRARLYYLRDKLPRLSTFK 236
            G+GVE VF L+SP ++ IK++   KVRRA+LYYLRD++ + +  K
Sbjct: 68  QGVGVERVFLLHSPRVESIKIIKRGKVRRAKLYYLRDRVGKATRVK 113

This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.

Cyanothece sp. (strain PCC 7425 / ATCC 29141) (taxid: 395961)

>sp|B2JA71|RL19_NOSP7 50S ribosomal protein L19 OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=rplS PE=3 SV=1

 Score = 92.8 bits (229), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 45/106 (42%), Positives = 75/106 (70%), Gaps = 1/106 (0%)

Query: 132 RAVEASESERPIPDIRTGDVVEIKLEVPENRR-RLSIYKGIVMSRQNAGIHTTIRIRRII 190
           R++EA + +  +PDI  GD V++ +++ E  + R+  Y+G+V++++N GI+ TI +R++ 
Sbjct: 8   RSIEAEQLKSNLPDIYVGDTVKVGVKIKEGEKYRVQPYEGVVIAKRNGGINETITVRKVF 67

Query: 191 AGIGVEIVFPLYSPNIKEIKVVSHRKVRRARLYYLRDKLPRLSTFK 236
            G+GVE VF L+SP I  IKV+   KVRRA+LYYLRD++ + +  K
Sbjct: 68  QGVGVERVFLLHSPRIDSIKVLRRGKVRRAKLYYLRDRVGKATRIK 113

This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.

Nostoc punctiforme (strain ATCC 29133 / PCC 73102) (taxid: 63737)

>sp|Q2VZV5|RL19_MAGSA 50S ribosomal protein L19 OS=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) GN=rplS PE=3 SV=1

 Score = 91.3 bits (225), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 45/106 (42%), Positives = 72/106 (67%), Gaps = 1/106 (0%)

Query: 124 DIMGILNKRAVEASESERPIPDIRTGDVVEIKLEVPE-NRRRLSIYKGIVMSRQNAGIHT 182
           +I+  L K  +E   ++R +P    GD +++ ++V E NR R+  Y+G+ ++R+N G+++
Sbjct: 3   NIIEQLEKEQIEKLTADRGVPSFAPGDTLKVNVKVIEGNRERVQAYEGVCIARKNDGLNS 62

Query: 183 TIRIRRIIAGIGVEIVFPLYSPNIKEIKVVSHRKVRRARLYYLRDK 228
           +  +R+I  G GVE +FPLYSPNI  I+VV    VRRA+LYYLRD+
Sbjct: 63  SFVVRKISYGEGVERIFPLYSPNIASIEVVRRGDVRRAKLYYLRDR 108

This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.

Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) (taxid: 342108)

>sp|Q2RJV3|RL19_MOOTA 50S ribosomal protein L19 OS=Moorella thermoacetica (strain ATCC 39073) GN=rplS PE=3 SV=1

 Score = 90.9 bits (224), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 45/105 (42%), Positives = 71/105 (67%), Gaps = 1/105 (0%)

Query: 133 AVEASESERPIPDIRTGDVVEIKLEVPE-NRRRLSIYKGIVMSRQNAGIHTTIRIRRIIA 191
            +E  +    IPD R GD V + ++V E NR R+ I++G+V+ R+  GI+ T  +RR+  
Sbjct: 6   TLEKEQLRTDIPDFRPGDTVRVHVKVVEGNRERIQIFEGVVIGRRGRGINETFTVRRVSY 65

Query: 192 GIGVEIVFPLYSPNIKEIKVVSHRKVRRARLYYLRDKLPRLSTFK 236
           G+ VE +FPL+SP ++ I+VV H KVRRA+LYYLR+++ + +  K
Sbjct: 66  GVAVERIFPLHSPRLERIEVVRHGKVRRAKLYYLRERVGKAARIK 110

This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.

Moorella thermoacetica (strain ATCC 39073) (taxid: 264732)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	236
89257581	224	plastid ribosomal protein L19, putative	0.919	0.968	0.645	4e-70
359497145	231	PREDICTED: 50S ribosomal protein L19, ch	0.927	0.948	0.612	1e-69
18414915	225	50S ribosomal protein L19-1 [Arabidopsis	0.923	0.968	0.639	5e-69
147854523	231	hypothetical protein VITISV_037813 [Viti	0.927	0.948	0.608	2e-66
449458994	221	PREDICTED: 50S ribosomal protein L19, ch	0.936	1.0	0.622	5e-66
255629017	212	unknown [Glycine max]	0.889	0.990	0.600	5e-66
351720814	213	uncharacterized protein LOC100500328 [Gl	0.894	0.990	0.605	7e-66
388517759	226	unknown [Lotus japonicus]	0.949	0.991	0.621	3e-65
297804426	225	ribosomal protein L19 family protein [Ar	0.906	0.951	0.638	9e-65
18422764	229	50S ribosomal protein L19-2 [Arabidopsis	0.940	0.969	0.616	1e-64

>gi|89257581|gb|ABD65070.1| plastid ribosomal protein L19, putative [Brassica oleracea]

 Score =  270 bits (689), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 153/237 (64%), Positives = 179/237 (75%), Gaps = 20/237 (8%)

Query: 3   SQVLPQALHWIPRSSTQCIPSKRLGFSTVLSRGPFVSHGVSVSAKPIGWNL---GFFVNA 59
           S + PQALH IPR+ TQ  PSK+LGFS+  S  P ++  ++VS   +  ++   GF ++A
Sbjct: 5   SHLFPQALHMIPRNPTQ--PSKKLGFSSFQSCAPSMNPRLTVSRVSLNHSVSKSGFSLDA 62

Query: 60  QVKDSFVVRAEANEEAEANESIEEEQNEAVQAQGDVVVAVEAESEDKVEEEEVKAPRKPR 119
           + +   +VRAE            E + EAV A  D     E   ED VE  EVKAP+K R
Sbjct: 63  KARREVLVRAEG-----------EGEGEAVDANADT----EGNVEDVVEAGEVKAPKKTR 107

Query: 120 VKLGDIMGILNKRAVEASESERPIPDIRTGDVVEIKLEVPENRRRLSIYKGIVMSRQNAG 179
           VKLGD+MGILN++A+E SE  RP+P+IRTGD+VEIKLEVPENRRRLSIYKGIVMSRQNAG
Sbjct: 108 VKLGDVMGILNQKAIEVSEKLRPVPEIRTGDIVEIKLEVPENRRRLSIYKGIVMSRQNAG 167

Query: 180 IHTTIRIRRIIAGIGVEIVFPLYSPNIKEIKVVSHRKVRRARLYYLRDKLPRLSTFK 236
           IHTTIRIRRIIAGIGVEIVFP+YSPNIKEIKVVSHRKVRRARLYYLRDKLPRLSTFK
Sbjct: 168 IHTTIRIRRIIAGIGVEIVFPIYSPNIKEIKVVSHRKVRRARLYYLRDKLPRLSTFK 224

Source: Brassica oleracea

Species: Brassica oleracea

Genus: Brassica

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359497145|ref|XP_002264869.2| PREDICTED: 50S ribosomal protein L19, chloroplastic [Vitis vinifera] gi|296088907|emb|CBI38456.3| unnamed protein product [Vitis vinifera]

 Score =  268 bits (685), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 152/248 (61%), Positives = 176/248 (70%), Gaps = 29/248 (11%)

Query: 1   MGSQVLPQALHWIPRSSTQCIPSKRLGFSTV------------LSRGPFVSHGVSVSAKP 48
           M S+VLPQAL   PRSS Q  P K+LG ST             LS   F S+  +   +P
Sbjct: 1   MASKVLPQALFITPRSSNQW-PPKKLGLSTFPSPRSSSLNLNRLSTSRFSSNSFAFHFRP 59

Query: 49  IGWNLGFFVNAQVKDSFVVRAEANEEAEANESIEEEQNEAVQAQGDVVVAVEAESEDKVE 108
           I  +   F        F+VRAEA+ E E      +E  E  +   +    V+ ++ED   
Sbjct: 60  IVVSPKRF--------FIVRAEADNEGELGA---DENTEEEETVSETESEVKLDAED--- 105

Query: 109 EEEVKAPRKPRVKLGDIMGILNKRAVEASESERPIPDIRTGDVVEIKLEVPENRRRLSIY 168
             E K PRKPRVKLGDIMGILNKRA+EASE ERP+PD+RTGD+VEIKLEVPENRRRLSIY
Sbjct: 106 --EAKPPRKPRVKLGDIMGILNKRAIEASEKERPVPDLRTGDIVEIKLEVPENRRRLSIY 163

Query: 169 KGIVMSRQNAGIHTTIRIRRIIAGIGVEIVFPLYSPNIKEIKVVSHRKVRRARLYYLRDK 228
           KGIV+S+QNAGIHTTIR+RRIIAG+GVEIVFP+YSPNIKEIKVV+HRKVRRARLYYLRDK
Sbjct: 164 KGIVISKQNAGIHTTIRVRRIIAGVGVEIVFPVYSPNIKEIKVVNHRKVRRARLYYLRDK 223

Query: 229 LPRLSTFK 236
           LPRLSTFK
Sbjct: 224 LPRLSTFK 231

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18414915|ref|NP_567531.1| 50S ribosomal protein L19-1 [Arabidopsis thaliana] gi|75248729|sp|Q8W463.1|RK191_ARATH RecName: Full=50S ribosomal protein L19-1, chloroplastic; Flags: Precursor gi|17065490|gb|AAL32899.1| Unknown protein [Arabidopsis thaliana] gi|20148593|gb|AAM10187.1| unknown protein [Arabidopsis thaliana] gi|21554252|gb|AAM63327.1| contains similarity to plastid ribosomal protein L19 [Arabidopsis thaliana] gi|332658510|gb|AEE83910.1| 50S ribosomal protein L19-1 [Arabidopsis thaliana]

 Score =  266 bits (680), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 154/241 (63%), Positives = 179/241 (74%), Gaps = 23/241 (9%)

Query: 1   MGSQVLPQALHWIPRSSTQCIPSKRLGFSTVLSRGPFVSHGVSVSAKPI---GWNLGFFV 57
           M    LPQALH IPR+ TQ   SK LGFS+ LS  P +   +SVS   +   G   GF +
Sbjct: 3   MSFHRLPQALHMIPRNPTQS--SKNLGFSSFLSCAPSMDSRISVSRLSLNHPGSKFGFSL 60

Query: 58  NAQVKDSFVVRAE-ANEEAEANESIEEEQNEAVQAQGDVVVAVEAESEDKVEEE-EVKAP 115
           + +V++ F+VRAE  N EAE+ E                 VA  A++E  VEE  E K  
Sbjct: 61  DTRVRNEFIVRAEEGNTEAESEE----------------FVAEIADTEGNVEEVVEAKPT 104

Query: 116 RKPRVKLGDIMGILNKRAVEASESERPIPDIRTGDVVEIKLEVPENRRRLSIYKGIVMSR 175
           RKPR+KLGD+MGILN++A+E +E  RP+P+IRTGD+VEIKLEVPEN+RRLSIYKGIVMSR
Sbjct: 105 RKPRIKLGDVMGILNQKAIEVAEKVRPVPEIRTGDIVEIKLEVPENKRRLSIYKGIVMSR 164

Query: 176 QNAGIHTTIRIRRIIAGIGVEIVFPLYSPNIKEIKVVSHRKVRRARLYYLRDKLPRLSTF 235
           QNAGIHTTIRIRRIIAGIGVEIVFP+YSPNIKEIKVVSHRKVRRARLYYLRDKLPRLSTF
Sbjct: 165 QNAGIHTTIRIRRIIAGIGVEIVFPIYSPNIKEIKVVSHRKVRRARLYYLRDKLPRLSTF 224

Query: 236 K 236
           K
Sbjct: 225 K 225

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147854523|emb|CAN82787.1| hypothetical protein VITISV_037813 [Vitis vinifera]

 Score =  258 bits (658), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 151/248 (60%), Positives = 174/248 (70%), Gaps = 29/248 (11%)

Query: 1   MGSQVLPQALHWIPRSSTQCIPSKRLGFSTV------------LSRGPFVSHGVSVSAKP 48
           M S+VLPQAL   PRSS Q  P K+LG ST             LS   F S+      +P
Sbjct: 1   MASKVLPQALFITPRSSNQX-PPKKLGLSTFPSPRSXSLNLNRLSTSRFSSNSFXFHFRP 59

Query: 49  IGWNLGFFVNAQVKDSFVVRAEANEEAEANESIEEEQNEAVQAQGDVVVAVEAESEDKVE 108
           I  +   F        F+V AEA+ E E      +E  E  +   +    V+ ++ED   
Sbjct: 60  IVVSPKRF--------FIVXAEADNEGELGP---DENTEEEETVSETESEVKLDAED--- 105

Query: 109 EEEVKAPRKPRVKLGDIMGILNKRAVEASESERPIPDIRTGDVVEIKLEVPENRRRLSIY 168
             E K PRKPRVKLGDIMGILNKRA+EASE ERP+PD+RTGD+VEIKLEVPENRRRLSIY
Sbjct: 106 --EAKPPRKPRVKLGDIMGILNKRAIEASEKERPVPDLRTGDIVEIKLEVPENRRRLSIY 163

Query: 169 KGIVMSRQNAGIHTTIRIRRIIAGIGVEIVFPLYSPNIKEIKVVSHRKVRRARLYYLRDK 228
           KGIV+S+QNAGIHTTIR+RRIIAG+GVEIVFP+YSPNIKEIKVV+HRKVRRARLYYLRDK
Sbjct: 164 KGIVISKQNAGIHTTIRVRRIIAGVGVEIVFPVYSPNIKEIKVVNHRKVRRARLYYLRDK 223

Query: 229 LPRLSTFK 236
           LPRLSTFK
Sbjct: 224 LPRLSTFK 231

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449458994|ref|XP_004147231.1| PREDICTED: 50S ribosomal protein L19, chloroplastic-like [Cucumis sativus] gi|449523724|ref|XP_004168873.1| PREDICTED: 50S ribosomal protein L19, chloroplastic-like [Cucumis sativus]

 Score =  256 bits (655), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 147/236 (62%), Positives = 175/236 (74%), Gaps = 15/236 (6%)

Query: 1   MGSQVLPQALHWIPRSSTQCIPSKRLGFSTVLSRGPFVSHGVSVSAKPIGWNLGFFVNAQ 60
           M S++LPQA+  IPR+  QC P +RLGF + +S G  VS     S+  IG +    V A 
Sbjct: 1   MASKILPQAVISIPRNPNQCAP-RRLGFCSAVS-GTRVSFSTLSSSS-IGSHFHHTVAAP 57

Query: 61  VKDSFVVRAEANEEAEANESIEEEQNEAVQAQGDVVVAVEAESEDKVEEEEVKAPRKPRV 120
           ++ +FVVRAEAN EA++      E       + D             + EE K  RKPRV
Sbjct: 58  LRRAFVVRAEANPEADSAAEEAPEAEVEAAVESDA------------QPEEEKPSRKPRV 105

Query: 121 KLGDIMGILNKRAVEASESERPIPDIRTGDVVEIKLEVPENRRRLSIYKGIVMSRQNAGI 180
           KLGD+MGILNKRA+EASE ERPIPDIRTGD+VE+KLEV ENRRRLS+Y+GIV+S+QNAGI
Sbjct: 106 KLGDVMGILNKRAIEASEKERPIPDIRTGDIVELKLEVQENRRRLSVYRGIVISKQNAGI 165

Query: 181 HTTIRIRRIIAGIGVEIVFPLYSPNIKEIKVVSHRKVRRARLYYLRDKLPRLSTFK 236
           HTTIRIRRIIAG+GVEIVFPLYSPNI+EI+VVSHRKVRRARLYYLRDKLP+LSTFK
Sbjct: 166 HTTIRIRRIIAGVGVEIVFPLYSPNIREIRVVSHRKVRRARLYYLRDKLPKLSTFK 221

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255629017|gb|ACU14853.1| unknown [Glycine max]

 Score =  256 bits (654), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 143/238 (60%), Positives = 164/238 (68%), Gaps = 28/238 (11%)

Query: 1   MGSQVLPQALHWIPRSSTQCIPSKRLGFSTVLSRGPFVSHGVSVSAKPIGWNLGFFVNAQ 60
           M SQVL QAL            + +L F +       +S    V + PI W     +   
Sbjct: 1   MASQVLLQALF-----------APKLSFPSSSRNVALISR---VPSTPISWRCTPLI--- 43

Query: 61  VKDSFVVRAEANEEA--EANESIEEEQNEAVQAQGDVVVAVEAESEDKVEEEEVKAPRKP 118
            K SFVVRA+ N +   EA E +  +  E V          E E+E   + E  K+PRKP
Sbjct: 44  AKPSFVVRADTNLDGGGEATEDVPSDNAEKVS---------EGEAEQVSDSEAPKSPRKP 94

Query: 119 RVKLGDIMGILNKRAVEASESERPIPDIRTGDVVEIKLEVPENRRRLSIYKGIVMSRQNA 178
           RVKLGDIMGILN+RA+EASE +RP PDIRTGD+VEIKLEVPEN+RRLSIYKGIV+S+QNA
Sbjct: 95  RVKLGDIMGILNQRAIEASEKQRPTPDIRTGDIVEIKLEVPENKRRLSIYKGIVISKQNA 154

Query: 179 GIHTTIRIRRIIAGIGVEIVFPLYSPNIKEIKVVSHRKVRRARLYYLRDKLPRLSTFK 236
           GIHTTIRIRRIIAG GVEIVFP+YSPNIKEIKVVSHRKVRRARLYYLRDKLPR STFK
Sbjct: 155 GIHTTIRIRRIIAGTGVEIVFPVYSPNIKEIKVVSHRKVRRARLYYLRDKLPRFSTFK 212

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351720814|ref|NP_001236421.1| uncharacterized protein LOC100500328 [Glycine max] gi|255630036|gb|ACU15370.1| unknown [Glycine max]

 Score =  256 bits (653), Expect = 7e-66,   Method: Compositional matrix adjust.
 Identities = 144/238 (60%), Positives = 166/238 (69%), Gaps = 27/238 (11%)

Query: 1   MGSQVLPQALHWIPRSSTQCIPSKRLGFSTVLSRGPFVSHGVSVSAKPIGWNLGFFVNAQ 60
           M SQVL Q   + P+ S    PS     + ++SR P         + PI W     +   
Sbjct: 1   MASQVLLQQALFAPKLS---FPSSSRNVA-LISRVP---------STPISWRCTPLI--- 44

Query: 61  VKDSFVVRAEANEEA--EANESIEEEQNEAVQAQGDVVVAVEAESEDKVEEEEVKAPRKP 118
            K SFVVRA+ N +   EA E +  +  E V          E E+E   + E  K+PRKP
Sbjct: 45  AKPSFVVRADTNLDGGGEATEDVPSDNAEKVS---------EGEAEQVSDSEAPKSPRKP 95

Query: 119 RVKLGDIMGILNKRAVEASESERPIPDIRTGDVVEIKLEVPENRRRLSIYKGIVMSRQNA 178
           RVKLGDIMGILN+RA+EASE +RP PDIRTGD+VEIKLEVPEN+RRLSIYKGIV+S+QNA
Sbjct: 96  RVKLGDIMGILNQRAIEASEKQRPTPDIRTGDIVEIKLEVPENKRRLSIYKGIVISKQNA 155

Query: 179 GIHTTIRIRRIIAGIGVEIVFPLYSPNIKEIKVVSHRKVRRARLYYLRDKLPRLSTFK 236
           GIHTTIRIRRIIAG GVEIVFP+YSPNIKEIKVVSHRKVRRARLYYLRDKLPR STFK
Sbjct: 156 GIHTTIRIRRIIAGTGVEIVFPVYSPNIKEIKVVSHRKVRRARLYYLRDKLPRFSTFK 213

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388517759|gb|AFK46941.1| unknown [Lotus japonicus]

 Score =  254 bits (648), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 148/238 (62%), Positives = 171/238 (71%), Gaps = 14/238 (5%)

Query: 1   MGSQVLPQA--LHWIPRSSTQCIPSKRLGFSTVLSRGPFVSHGVSVSAKPIGWNLGFFVN 58
           M SQV  Q   L + P    QC P+K LG S+ L    F      +S+  I W     ++
Sbjct: 1   MASQVFLQQGLLLFAP---NQCSPTK-LGVSSCLGSRNFPL----ISSTSISWRCNNPLS 52

Query: 59  AQVKDSFVVRAEANEEAEANESIEEEQNEAVQAQGDVVVAVEAESEDKVEEEEVKAPRKP 118
           A  K SFVVRA++N +A ++ + E  + E    Q  V    EAE     E E+ K PRK 
Sbjct: 53  A--KPSFVVRADSNVDATSDNAGEVPEAEGSVDQ--VPEDGEAELASDSEVEQPKPPRKQ 108

Query: 119 RVKLGDIMGILNKRAVEASESERPIPDIRTGDVVEIKLEVPENRRRLSIYKGIVMSRQNA 178
           RVKLGD+MGILN+RA+EASES RP P+IRTGDVVEIKLEVPEN+RRLSIYKGIV+SRQNA
Sbjct: 109 RVKLGDVMGILNQRAIEASESMRPTPEIRTGDVVEIKLEVPENKRRLSIYKGIVISRQNA 168

Query: 179 GIHTTIRIRRIIAGIGVEIVFPLYSPNIKEIKVVSHRKVRRARLYYLRDKLPRLSTFK 236
           GIHTTIRIRRIIAG GVEIVFP+YSPNIKEIKVV+HRKVRRARLYYLRDKLPR STFK
Sbjct: 169 GIHTTIRIRRIIAGTGVEIVFPIYSPNIKEIKVVNHRKVRRARLYYLRDKLPRFSTFK 226

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297804426|ref|XP_002870097.1| ribosomal protein L19 family protein [Arabidopsis lyrata subsp. lyrata] gi|297315933|gb|EFH46356.1| ribosomal protein L19 family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  252 bits (643), Expect = 9e-65,   Method: Compositional matrix adjust.
 Identities = 150/235 (63%), Positives = 176/235 (74%), Gaps = 21/235 (8%)

Query: 6   LPQALHWIPRSSTQCIPSKRLGFSTVLSRGPFVSHGVSVSAKPIGWN---LGFFVNAQVK 62
           LPQALH  PR+ TQ   SK LGFS+ LS  P ++  +SVS   +  +    GF ++ +V+
Sbjct: 8   LPQALHMTPRNPTQS--SKNLGFSSFLSCAPSMNSRISVSRLSLNHSSSKFGFSLDTRVR 65

Query: 63  DSFVVRAEANEEAEANESIEEEQNEAVQAQGDVVVAVEAESEDKVEE-EEVKAPRKPRVK 121
             F+VR E     E N           +A+ +  VA  A++E  VEE  E K  RKPR+K
Sbjct: 66  KEFIVRVE-----EGN----------TEAESEEAVAEIADTEGNVEEVGEAKPQRKPRIK 110

Query: 122 LGDIMGILNKRAVEASESERPIPDIRTGDVVEIKLEVPENRRRLSIYKGIVMSRQNAGIH 181
           LGD+MGILN+RA+E SE  RP+P+IRTGD+VEIKLEVPEN+RRLSIYKGIVMSRQNAGIH
Sbjct: 111 LGDVMGILNQRAIEVSEKVRPVPEIRTGDIVEIKLEVPENKRRLSIYKGIVMSRQNAGIH 170

Query: 182 TTIRIRRIIAGIGVEIVFPLYSPNIKEIKVVSHRKVRRARLYYLRDKLPRLSTFK 236
           TTIRIRRIIAGIGVEIVFP+YSPNIKEIKVVSHRKVRRARLYYLRDKLPRLSTFK
Sbjct: 171 TTIRIRRIIAGIGVEIVFPIYSPNIKEIKVVSHRKVRRARLYYLRDKLPRLSTFK 225

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18422764|ref|NP_568677.1| 50S ribosomal protein L19-2 [Arabidopsis thaliana] gi|75247671|sp|Q8RXX5.1|RK192_ARATH RecName: Full=50S ribosomal protein L19-2, chloroplastic; Flags: Precursor gi|19347900|gb|AAL85972.1| unknown protein [Arabidopsis thaliana] gi|21436235|gb|AAM51256.1| unknown protein [Arabidopsis thaliana] gi|332008099|gb|AED95482.1| 50S ribosomal protein L19-2 [Arabidopsis thaliana]

 Score =  252 bits (643), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 146/237 (61%), Positives = 171/237 (72%), Gaps = 15/237 (6%)

Query: 3   SQVLPQALHWIPRSSTQCIPSKRLGFSTVLSRGPFVSHGVSVSAKPIGW---NLGFFVNA 59
           S +LPQALH IPR  T    SK LG S++L R   V+  +SVS   +     N GF +++
Sbjct: 5   SHLLPQALHMIPR--TPSFSSKNLGVSSILPRASSVNSRLSVSRVFLNHSSSNFGFAIDS 62

Query: 60  QVKDSFVVRAEANEEAEANESIEEEQNEAVQAQGDVVVAVEAESEDKVEEEEVKAPRKPR 119
           + +  F+ +AE + E E    +E            V    E E E  V  EE K P K R
Sbjct: 63  KKRKEFIAKAEESTEGETEAVVENA----------VETEAEGEGEATVAAEEAKPPWKTR 112

Query: 120 VKLGDIMGILNKRAVEASESERPIPDIRTGDVVEIKLEVPENRRRLSIYKGIVMSRQNAG 179
           VKLGDIMG+LNK+A+E +E+ RP+P +RTGD+VEIKLEVPEN+RRLSIYKGIVMSRQNAG
Sbjct: 113 VKLGDIMGLLNKKAIEVAETVRPVPGLRTGDIVEIKLEVPENKRRLSIYKGIVMSRQNAG 172

Query: 180 IHTTIRIRRIIAGIGVEIVFPLYSPNIKEIKVVSHRKVRRARLYYLRDKLPRLSTFK 236
           IHTTIRIRRIIAGIGVEIVFP+YSPNIKEIKVVSHRKVRRARLYYLRDKLPRLSTFK
Sbjct: 173 IHTTIRIRRIIAGIGVEIVFPIYSPNIKEIKVVSHRKVRRARLYYLRDKLPRLSTFK 229

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	236
TAIR|locus:2129186	225	AT4G17560 [Arabidopsis thalian	0.512	0.537	0.743	1.6e-55
TAIR|locus:2171609	229	AT5G47190 [Arabidopsis thalian	0.516	0.532	0.737	2.9e-52
TAIR|locus:2139757	225	AT4G11630 [Arabidopsis thalian	0.457	0.48	0.518	2.6e-24
TAIR|locus:2181975	229	AT5G11750 [Arabidopsis thalian	0.457	0.471	0.509	5.3e-24
TAIR|locus:2032457	222	AT1G24240 [Arabidopsis thalian	0.457	0.486	0.490	7.8e-23
TIGR_CMR|CHY_1428	113	CHY_1428 "ribosomal protein L1	0.402	0.840	0.364	2.7e-13
TIGR_CMR|CBU_0442	115	CBU_0442 "ribosomal protein L1	0.436	0.895	0.380	7.1e-13
TIGR_CMR|GSU_0648	118	GSU_0648 "ribosomal protein L1	0.415	0.830	0.34	1.9e-12
UNIPROTKB|P66080	113	rplS "50S ribosomal protein L1	0.360	0.752	0.383	1.7e-11
TIGR_CMR|SPO_3257	127	SPO_3257 "ribosomal protein L1	0.364	0.677	0.409	1.7e-11

TAIR|locus:2129186 AT4G17560 [Arabidopsis thaliana (taxid:3702)]

 Score = 467 (169.5 bits), Expect = 1.6e-55, Sum P(2) = 1.6e-55
 Identities = 90/121 (74%), Positives = 101/121 (83%)

Query:   116 RKPRVKLGDIMGILNKRAVEASESERPIPDIRTGDVVEIKLEVPENRRRLSIYKGIVMSR 175
             RKPR+KLGD+MGILN++A+E +E  RP+P+IRTGD+VEIKLEVPEN+RRLSIYKGIVMSR
Sbjct:   105 RKPRIKLGDVMGILNQKAIEVAEKVRPVPEIRTGDIVEIKLEVPENKRRLSIYKGIVMSR 164

Query:   176 QNXXXXXXXXXXXXXXXXXVEIVFPLYSPNIKEIKVVSHRKVRRARLYYLRDKLPRLSTF 235
             QN                 VEIVFP+YSPNIKEIKVVSHRKVRRARLYYLRDKLPRLSTF
Sbjct:   165 QNAGIHTTIRIRRIIAGIGVEIVFPIYSPNIKEIKVVSHRKVRRARLYYLRDKLPRLSTF 224

Query:   236 K 236
             K
Sbjct:   225 K 225

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005840 "ribosome" evidence=IEA;ISS

GO:0006412 "translation" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0042254 "ribosome biogenesis" evidence=ISS

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0010267 "production of ta-siRNAs involved in RNA interference" evidence=RCA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

GO:0035196 "production of miRNAs involved in gene silencing by miRNA" evidence=RCA

GO:0051607 "defense response to virus" evidence=RCA

TAIR|locus:2171609 AT5G47190 [Arabidopsis thaliana (taxid:3702)]

 Score = 458 (166.3 bits), Expect = 2.9e-52, Sum P(2) = 2.9e-52
 Identities = 90/122 (73%), Positives = 100/122 (81%)

Query:   115 PRKPRVKLGDIMGILNKRAVEASESERPIPDIRTGDVVEIKLEVPENRRRLSIYKGIVMS 174
             P K RVKLGDIMG+LNK+A+E +E+ RP+P +RTGD+VEIKLEVPEN+RRLSIYKGIVMS
Sbjct:   108 PWKTRVKLGDIMGLLNKKAIEVAETVRPVPGLRTGDIVEIKLEVPENKRRLSIYKGIVMS 167

Query:   175 RQNXXXXXXXXXXXXXXXXXVEIVFPLYSPNIKEIKVVSHRKVRRARLYYLRDKLPRLST 234
             RQN                 VEIVFP+YSPNIKEIKVVSHRKVRRARLYYLRDKLPRLST
Sbjct:   168 RQNAGIHTTIRIRRIIAGIGVEIVFPIYSPNIKEIKVVSHRKVRRARLYYLRDKLPRLST 227

Query:   235 FK 236
             FK
Sbjct:   228 FK 229

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005840 "ribosome" evidence=IEA;ISS

GO:0006412 "translation" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0042254 "ribosome biogenesis" evidence=ISS

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0009793 "embryo development ending in seed dormancy" evidence=RCA

GO:0010027 "thylakoid membrane organization" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=RCA

GO:0010267 "production of ta-siRNAs involved in RNA interference" evidence=RCA

GO:0016226 "iron-sulfur cluster assembly" evidence=RCA

GO:0035196 "production of miRNAs involved in gene silencing by miRNA" evidence=RCA

GO:0048481 "ovule development" evidence=RCA

GO:0051607 "defense response to virus" evidence=RCA

TAIR|locus:2139757 AT4G11630 [Arabidopsis thaliana (taxid:3702)]

 Score = 278 (102.9 bits), Expect = 2.6e-24, P = 2.6e-24
 Identities = 56/108 (51%), Positives = 76/108 (70%)

Query:   125 IMGILNKRAVEASESERPIPDIRTGDVVEIKLEVPENRRRLSIYKGIVMSRQNXXXXXXX 184
             IM I++K AVE   S R IP+I+ G +V++K+EVPEN+RR+SI KG+V++R+N       
Sbjct:   115 IMQIVDKEAVEEVRSLREIPEIKPGYIVQLKVEVPENKRRVSIVKGVVIARRNAGLNSTF 174

Query:   185 XXXXXXXXXXVEIVFPLYSPNIKEIKVVSHRKVRRARLYYLRDKLPRL 232
                       VE +FPLYSPN++EIKVV  +KVRRA+LYYLRDK+  L
Sbjct:   175 RIRRLVAGVGVESMFPLYSPNLREIKVVDKKKVRRAKLYYLRDKVNAL 222

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0005840 "ribosome" evidence=IEA;ISS

GO:0006412 "translation" evidence=IEA;ISS

GO:0042254 "ribosome biogenesis" evidence=ISS

TAIR|locus:2181975 AT5G11750 [Arabidopsis thaliana (taxid:3702)]

 Score = 275 (101.9 bits), Expect = 5.3e-24, P = 5.3e-24
 Identities = 55/108 (50%), Positives = 76/108 (70%)

Query:   125 IMGILNKRAVEASESERPIPDIRTGDVVEIKLEVPENRRRLSIYKGIVMSRQNXXXXXXX 184
             IM I++K AVE   + R IP+I+ G +V++K+EVPEN+RR+SI KG+V++R+N       
Sbjct:   119 IMQIVDKEAVEEVRNLREIPEIKPGYIVQLKVEVPENKRRVSIVKGVVIARRNAGLNSTF 178

Query:   185 XXXXXXXXXXVEIVFPLYSPNIKEIKVVSHRKVRRARLYYLRDKLPRL 232
                       VE +FPLYSPN++EIKVV  +KVRRA+LYYLRDK+  L
Sbjct:   179 RIRRLVAGVGVESMFPLYSPNLREIKVVDKKKVRRAKLYYLRDKVNAL 226

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005840 "ribosome" evidence=IEA;ISS

GO:0006412 "translation" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0042254 "ribosome biogenesis" evidence=ISS

TAIR|locus:2032457 AT1G24240 [Arabidopsis thaliana (taxid:3702)]

 Score = 264 (98.0 bits), Expect = 7.8e-23, P = 7.8e-23
 Identities = 53/108 (49%), Positives = 75/108 (69%)

Query:   125 IMGILNKRAVEASESERPIPDIRTGDVVEIKLEVPENRRRLSIYKGIVMSRQNXXXXXXX 184
             IM I++K AVE   + R IP+I+ G +V++K+EVPEN+RR+SI KG+V++R+N       
Sbjct:   112 IMQIVDKEAVEEVRTLREIPEIKPGYIVQLKVEVPENKRRVSIVKGVVIARRNAGLNSTF 171

Query:   185 XXXXXXXXXXVEIVFPLYSPNIKEIKVVSHRKVRRARLYYLRDKLPRL 232
                       VE +FPLYSPN++ IKVV  +KVRRA+LYYLR+K+  L
Sbjct:   172 RIRRLVAGVGVESMFPLYSPNLRVIKVVDKKKVRRAKLYYLREKVNAL 219

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0005840 "ribosome" evidence=IEA;ISS

GO:0006412 "translation" evidence=IEA;ISS

GO:0042254 "ribosome biogenesis" evidence=ISS

GO:0010267 "production of ta-siRNAs involved in RNA interference" evidence=RCA

GO:0035196 "production of miRNAs involved in gene silencing by miRNA" evidence=RCA

GO:0051607 "defense response to virus" evidence=RCA

TIGR_CMR|CHY_1428 CHY_1428 "ribosomal protein L19" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 174 (66.3 bits), Expect = 2.7e-13, P = 2.7e-13
 Identities = 35/96 (36%), Positives = 56/96 (58%)

Query:   132 RAVEASESERPIPDIRTGDVVEIKLEVPE-NRRRLSIYKGIVMSRQNXXXXXXXXXXXXX 190
             +++E  +  + +P+ R GD V++  +V E NR R+  Y+G+V+ ++              
Sbjct:     5 KSLEEEQLRKDLPEFRPGDTVKVYFKVIEGNRERIQPYEGVVIRKRGSGLSATFTVRRVS 64

Query:   191 XXXXVEIVFPLYSPNIKEIKVVSHRKVRRARLYYLR 226
                 VE  FPL+SP I++I+V+   KVRRARLYYLR
Sbjct:    65 YGIGVERTFPLHSPRIEKIEVIRRGKVRRARLYYLR 100

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

TIGR_CMR|CBU_0442 CBU_0442 "ribosomal protein L19" [Coxiella burnetii RSA 493 (taxid:227377)]

 Score = 170 (64.9 bits), Expect = 7.1e-13, P = 7.1e-13
 Identities = 40/105 (38%), Positives = 59/105 (56%)

Query:   134 VEASESE-RPIPDIRTGDVVEIKLEVPE-NRRRLSIYKGIVMSRQNXXXXXXXXXXXXXX 191
             +E  +++ + IPD R GD V ++++V E NR RL  ++G+V++R++              
Sbjct:     8 LETEQTQGKEIPDFRAGDTVTVQVKVKEGNRERLQAFEGVVIARRHRGLNSSFTVRKVSH 67

Query:   192 XXXVEIVFPLYSPNIKEIKVVSHRKVRRARLYYLRDKLPRLSTFK 236
                VE VF LYSP I  IKV     VRRA+LYYLR+   R +  K
Sbjct:    68 GEGVERVFQLYSPLIASIKVNRRGDVRRAKLYYLRNLRGRKAKIK 112

GO:0003735 "structural constituent of ribosome" evidence=ISS

TIGR_CMR|GSU_0648 GSU_0648 "ribosomal protein L19" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 166 (63.5 bits), Expect = 1.9e-12, P = 1.9e-12
 Identities = 34/100 (34%), Positives = 59/100 (59%)

Query:   129 LNK-RAVEASESERPIPDIRTGDVVEIKLEVPE-NRRRLSIYKGIVMSRQNXXXXXXXXX 186
             +NK  A+E  + ++ IP  + GD +++ +++ E ++ R+  ++G+ +SRQN         
Sbjct:     1 MNKIDAIELEQMKKNIPPFKPGDTLKVHVKIVEGDKSRIQAFQGVCISRQNGGIRESFTV 60

Query:   187 XXXXXXXXVEIVFPLYSPNIKEIKVVSHRKVRRARLYYLR 226
                     VE VFPL+SP +  I+V++   VRRA+LYYLR
Sbjct:    61 RKISNNIGVERVFPLHSPTVDAIEVITRGHVRRAKLYYLR 100

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

GO:0042254 "ribosome biogenesis" evidence=ISS

UNIPROTKB|P66080 rplS "50S ribosomal protein L19" [Mycobacterium tuberculosis (taxid:1773)]

 Score = 157 (60.3 bits), Expect = 1.7e-11, P = 1.7e-11
 Identities = 33/86 (38%), Positives = 48/86 (55%)

Query:   143 IPDIRTGDVVEIKLEVPEN-RRRLSIYKGIVMSRQNXXXXXXXXXXXXXXXXXVEIVFPL 201
             IP    GD + + ++V E  + RL ++KG+V+ RQ                  VE  FP+
Sbjct:    16 IPAFNPGDTINVHVKVIEGAKERLQVFKGVVIRRQGGGIRETFTVRKESYGVGVERTFPV 75

Query:   202 YSPNIKEIKVVSHRKVRRARLYYLRD 227
             +SPNI  I+VV+   VRRA+LYYLR+
Sbjct:    76 HSPNIDHIEVVTRGDVRRAKLYYLRE 101

GO:0005886 "plasma membrane" evidence=IDA

GO:0040007 "growth" evidence=IMP

TIGR_CMR|SPO_3257 SPO_3257 "ribosomal protein L19" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 157 (60.3 bits), Expect = 1.7e-11, P = 1.7e-11
 Identities = 36/88 (40%), Positives = 48/88 (54%)

Query:   141 RPIPDIRTGDVVEIKLEVPENRR-RLSIYKGIVMSRQNXXXXXXXXXXXXXXXXX-VEIV 198
             + IPD + GD + +  +V E  R R+  Y+G+ +SR+N                  VE V
Sbjct:    17 KDIPDFKAGDTIRVGYKVTEGTRSRVQNYEGVCISRKNGSGIAGSFTVRKISFGEGVERV 76

Query:   199 FPLYSPNIKEIKVVSHRKVRRARLYYLR 226
             FPLYS NI  I VV   +VRRA+LYYLR
Sbjct:    77 FPLYSTNIDSITVVRRGRVRRAKLYYLR 104

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

GO:0042255 "ribosome assembly" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8W463	RK191_ARATH	No assigned EC number	0.6390	0.9237	0.9688	yes	no
P82413	RK19_SPIOL	No assigned EC number	0.5836	0.9491	0.9613	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00011414001	SubName- Full=Chromosome undetermined scaffold_306, whole genome shotgun sequence; (231 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00016542001	SubName- Full=Chromosome chr11 scaffold_13, whole genome shotgun sequence; (136 aa)	•			•			•		0.855
	GSVIVG00026943001	SubName- Full=Chromosome chr15 scaffold_40, whole genome shotgun sequence; (265 aa)				•	•		•		0.783
	GSVIVG00035271001	SubName- Full=Chromosome chr10 scaffold_76, whole genome shotgun sequence; (140 aa)				•	•		•		0.771
	rpl20	RecName- Full=50S ribosomal protein L20, chloroplastic;; Binds directly to 23S ribosomal RNA an [...] (117 aa)	•			•	•		•		0.758
	GSVIVG00026031001	SubName- Full=Chromosome chr12 scaffold_36, whole genome shotgun sequence; (117 aa)				•	•		•		0.741
	GSVIVG00033342001	SubName- Full=Chromosome chr19 scaffold_66, whole genome shotgun sequence; (203 aa)				•			•		0.739
	GSVIVG00015322001	SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence; (167 aa)				•			•		0.737
	GSVIVG00023012001	SubName- Full=Chromosome chr6 scaffold_28, whole genome shotgun sequence; (213 aa)				•	•		•		0.721
	GSVIVG00027910001	SubName- Full=Chromosome chr19 scaffold_4, whole genome shotgun sequence; (235 aa)				•	•		•		0.711
	GSVIVG00028715001	RecName- Full=Ribosomal protein L1; (347 aa)				•	•		•		0.700

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	236
pfam01245	113	pfam01245, Ribosomal_L19, Ribosomal protein L19	1e-37
PRK05338	116	PRK05338, rplS, 50S ribosomal protein L19; Provisi	2e-31
CHL00084	117	CHL00084, rpl19, ribosomal protein L19	2e-29
COG0335	115	COG0335, RplS, Ribosomal protein L19 [Translation,	3e-28
TIGR01024	113	TIGR01024, rplS_bact, ribosomal protein L19, bacte	1e-26

>gnl|CDD|201683 pfam01245, Ribosomal_L19, Ribosomal protein L19

 Score =  126 bits (320), Expect = 1e-37
 Identities = 41/98 (41%), Positives = 73/98 (74%), Gaps = 1/98 (1%)

Query: 132 RAVEASESERPIPDIRTGDVVEIKLEVPE-NRRRLSIYKGIVMSRQNAGIHTTIRIRRII 190
           + +EA + ++ +P+ R GD V++ +++ E N+ R+ +++G+V++++  G+++T  +R+I 
Sbjct: 5   KEIEAEQLKKDLPEFRVGDTVKVHVKIKEGNKERIQVFEGVVIAKRGRGLNSTFTVRKIS 64

Query: 191 AGIGVEIVFPLYSPNIKEIKVVSHRKVRRARLYYLRDK 228
            G+GVE VFPL+SP I +I+VV   KVRRA+LYYLRD 
Sbjct: 65  QGVGVERVFPLHSPRIDKIEVVRRGKVRRAKLYYLRDL 102

Length = 113

>gnl|CDD|235418 PRK05338, rplS, 50S ribosomal protein L19; Provisional

 Score =  110 bits (279), Expect = 2e-31
 Identities = 42/98 (42%), Positives = 67/98 (68%), Gaps = 1/98 (1%)

Query: 132 RAVEASESERPIPDIRTGDVVEIKLEVPE-NRRRLSIYKGIVMSRQNAGIHTTIRIRRII 190
           + +EA +  + IP+ R GD V + ++V E N+ R+  ++G+V++R+  G++ T  +R+I 
Sbjct: 5   KEIEAEQLRKDIPEFRPGDTVRVHVKVVEGNKERIQAFEGVVIARRGRGLNETFTVRKIS 64

Query: 191 AGIGVEIVFPLYSPNIKEIKVVSHRKVRRARLYYLRDK 228
            G+GVE  FPL+SP I  I+VV   KVRRA+LYYLR+ 
Sbjct: 65  YGVGVERTFPLHSPRIDSIEVVRRGKVRRAKLYYLREL 102

Length = 116

>gnl|CDD|177023 CHL00084, rpl19, ribosomal protein L19

 Score =  106 bits (266), Expect = 2e-29
 Identities = 44/105 (41%), Positives = 74/105 (70%), Gaps = 4/105 (3%)

Query: 128 ILNKRAVEASESE---RPIPDIRTGDVVEIKLEVPE-NRRRLSIYKGIVMSRQNAGIHTT 183
           +  ++ V+  ESE   + +P IR GD V++ + + E N+ R+  Y+G V++++N+G++TT
Sbjct: 2   MKLQQLVKEIESEFLKKNLPKIRVGDTVKVGVLIQEGNKERVQFYEGTVIAKKNSGLNTT 61

Query: 184 IRIRRIIAGIGVEIVFPLYSPNIKEIKVVSHRKVRRARLYYLRDK 228
           I +R++  GIGVE VF L+SP +  I+V+   KVRRA+LYYLR++
Sbjct: 62  ITVRKVFQGIGVERVFLLHSPKLASIEVLRRSKVRRAKLYYLRNR 106

Length = 117

>gnl|CDD|223412 COG0335, RplS, Ribosomal protein L19 [Translation, ribosomal structure and biogenesis]

 Score =  103 bits (258), Expect = 3e-28
 Identities = 41/98 (41%), Positives = 68/98 (69%), Gaps = 1/98 (1%)

Query: 132 RAVEASESERPIPDIRTGDVVEIKLEVPE-NRRRLSIYKGIVMSRQNAGIHTTIRIRRII 190
           + +E  + ++ IP  R GD V + +++ E ++ R+  ++G+V++R+  GI  T  +R+I 
Sbjct: 7   QQLEQEQIKKDIPSFRPGDTVRVHVKIVEGSKERVQAFEGVVIARRGRGISETFTVRKIS 66

Query: 191 AGIGVEIVFPLYSPNIKEIKVVSHRKVRRARLYYLRDK 228
            G+GVE VFPL+SP I+ I+VV   KVRRA+LYYLR++
Sbjct: 67  YGVGVERVFPLHSPLIESIEVVRRGKVRRAKLYYLRER 104

Length = 115

>gnl|CDD|130096 TIGR01024, rplS_bact, ribosomal protein L19, bacterial type

 Score = 98.9 bits (247), Expect = 1e-26
 Identities = 41/98 (41%), Positives = 69/98 (70%), Gaps = 1/98 (1%)

Query: 132 RAVEASESERPIPDIRTGDVVEIKLEVPE-NRRRLSIYKGIVMSRQNAGIHTTIRIRRII 190
           + +E  + ++ +PD R GD V + +++ E  + R+ +++G+V++R+  GI  T  +R+I 
Sbjct: 5   KQIEQEQLKKDLPDFRVGDTVRVHVKIVEGKKERIQVFEGVVIARRGGGIGETFTVRKIS 64

Query: 191 AGIGVEIVFPLYSPNIKEIKVVSHRKVRRARLYYLRDK 228
            G+GVE +FPL+SPNI  I+VV   KVRRA+LYYLR++
Sbjct: 65  YGVGVERIFPLHSPNIDSIEVVRRGKVRRAKLYYLRER 102

This model describes bacterial ribosomoal protein L19 and its chloroplast equivalent. Putative mitochondrial L19 are found in several species (but not Saccharomyces cerevisiae) and score between trusted and noise cutoffs [Protein synthesis, Ribosomal proteins: synthesis and modification]. Length = 113

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	236
CHL00084	117	rpl19 ribosomal protein L19	100.0
PRK05338	116	rplS 50S ribosomal protein L19; Provisional	100.0
TIGR01024	113	rplS_bact ribosomal protein L19, bacterial type. T	100.0
PF01245	113	Ribosomal_L19: Ribosomal protein L19; InterPro: IP	100.0
COG0335	115	RplS Ribosomal protein L19 [Translation, ribosomal	100.0
KOG1698	201	consensus Mitochondrial/chloroplast ribosomal prot	100.0

>CHL00084 rpl19 ribosomal protein L19

Probab=100.00  E-value=9e-42  Score=276.05  Aligned_cols=103  Identities=40%  Similarity=0.785  Sum_probs=98.4

Q ss_pred             HHHHhhhcCCCCCCCCCCCEEEEEEEeec-CccccceEEEEEEEEecCCccceEEEEeeeCCeeEEEEeeccCCccceEE
Q 026573          132 RAVEASESERPIPDIRTGDVVEIKLEVPE-NRRRLSIYKGIVMSRQNAGIHTTIRIRRIIAGIGVEIVFPLYSPNIKEIK  210 (236)
Q Consensus       132 ~~ie~~~~kk~iP~f~~GDiV~V~~~i~E-~K~RiQ~F~GVVIa~r~~Gl~sTFtLRnii~GvGVEr~FpLySP~I~~Ie  210 (236)
                      +.+++.+.+.++|+|++||||+|++.+.| +|+|+|.|+|+||+++|+|+++||||||+++|+|||++||||||.|++|+
T Consensus         9 ~~~~~~~~~~~~p~f~~GDtV~V~~~i~eg~k~R~q~F~GvvI~~r~~G~~~tftvRki~~gvGVEr~fpl~SP~I~~Ie   88 (117)
T CHL00084          9 KEIESEFLKKNLPKIRVGDTVKVGVLIQEGNKERVQFYEGTVIAKKNSGLNTTITVRKVFQGIGVERVFLLHSPKLASIE   88 (117)
T ss_pred             HHHHHHHhhcCCCccCCCCEEEEEEEEecCCeeEeceEEEEEEEEeCCCCCeeEEEEEeccCccEEEEEecCCCccceEE
Confidence            57888888899999999999999999999 89999999999999999999999999999999999999999999999999


Q ss_pred             EeeecccCCcceeeeccCCCCCCC
Q 026573          211 VVSHRKVRRARLYYLRDKLPRLST  234 (236)
Q Consensus       211 Vlrr~KVRRAKLYYLRdk~~r~ST  234 (236)
                      |++++|||||||||||++.++-..
T Consensus        89 V~r~gkvRRAKLyYLR~~~gKaar  112 (117)
T CHL00084         89 VLRRSKVRRAKLYYLRNRVGKAAR  112 (117)
T ss_pred             EEEeCccchheeEEeccCcChhhe
Confidence            999999999999999999887543

>PRK05338 rplS 50S ribosomal protein L19; Provisional

Probab=100.00  E-value=9.7e-42  Score=275.43  Aligned_cols=103  Identities=41%  Similarity=0.778  Sum_probs=97.3

Q ss_pred             HHHHhhhcCCCCCCCCCCCEEEEEEEeec-CccccceEEEEEEEEecCCccceEEEEeeeCCeeEEEEeeccCCccceEE
Q 026573          132 RAVEASESERPIPDIRTGDVVEIKLEVPE-NRRRLSIYKGIVMSRQNAGIHTTIRIRRIIAGIGVEIVFPLYSPNIKEIK  210 (236)
Q Consensus       132 ~~ie~~~~kk~iP~f~~GDiV~V~~~i~E-~K~RiQ~F~GVVIa~r~~Gl~sTFtLRnii~GvGVEr~FpLySP~I~~Ie  210 (236)
                      +.+|+.++++++|+|++||||+|+++|.| +|+|+|.|+|+||+++|+|+++||||||+++|+|||++||||||.|++|+
T Consensus         5 ~~~~~~~~~~~~p~f~~GD~V~V~~~i~eg~k~R~q~f~GvvI~~~~~G~~~tftvRki~~gvGVEr~fpl~SP~I~~Ie   84 (116)
T PRK05338          5 KEIEAEQLRKDIPEFRPGDTVRVHVKVVEGNKERIQAFEGVVIARRGRGLNETFTVRKISYGVGVERTFPLHSPRIDSIE   84 (116)
T ss_pred             HHHHHHHhhcCCCCcCCCCEEEEEEEEccCCceEeccEEEEEEEEeCCCCCceEEEEEcccCccEEEEecCCCCcccEEE
Confidence            45777777899999999999999999999 89999999999999999999999999999999999999999999999999


Q ss_pred             EeeecccCCcceeeeccCCCCCCC
Q 026573          211 VVSHRKVRRARLYYLRDKLPRLST  234 (236)
Q Consensus       211 Vlrr~KVRRAKLYYLRdk~~r~ST  234 (236)
                      |++++|+|||||||||++.++-..
T Consensus        85 V~r~gkvRRAKLyYLR~~~gK~ar  108 (116)
T PRK05338         85 VVRRGKVRRAKLYYLRELRGKAAR  108 (116)
T ss_pred             EEEecccchhheeeeccCcchhhe
Confidence            999999999999999999876543

>TIGR01024 rplS_bact ribosomal protein L19, bacterial type

Probab=100.00  E-value=1.3e-41  Score=273.69  Aligned_cols=103  Identities=40%  Similarity=0.811  Sum_probs=97.7

Q ss_pred             HHHHhhhcCCCCCCCCCCCEEEEEEEeec-CccccceEEEEEEEEecCCccceEEEEeeeCCeeEEEEeeccCCccceEE
Q 026573          132 RAVEASESERPIPDIRTGDVVEIKLEVPE-NRRRLSIYKGIVMSRQNAGIHTTIRIRRIIAGIGVEIVFPLYSPNIKEIK  210 (236)
Q Consensus       132 ~~ie~~~~kk~iP~f~~GDiV~V~~~i~E-~K~RiQ~F~GVVIa~r~~Gl~sTFtLRnii~GvGVEr~FpLySP~I~~Ie  210 (236)
                      +.+|+.+.++++|+|++||+|+|++.+.| +|+|+|.|+|+||+++|+|+++||||||+++|+|||++||||||.|++|+
T Consensus         5 ~~~e~~~~~~~ip~f~~GD~v~V~~~i~eg~k~R~q~f~GvvI~~~~~G~~~tftvR~i~~gvGVEr~fpl~SP~I~~Ie   84 (113)
T TIGR01024         5 KQIEQEQLKKDLPDFRVGDTVRVHVKIVEGKKERIQVFEGVVIARRGGGIGETFTVRKISYGVGVERIFPLHSPNIDSIE   84 (113)
T ss_pred             HHHHHHHhhcCCCccCCCCEEEEEEEEccCCceEcccEEEEEEEEeCCCCceEEEEEEeccCccEEEEEEcCCCccceEE
Confidence            45677777899999999999999999999 89999999999999999999999999999999999999999999999999


Q ss_pred             EeeecccCCcceeeeccCCCCCCC
Q 026573          211 VVSHRKVRRARLYYLRDKLPRLST  234 (236)
Q Consensus       211 Vlrr~KVRRAKLYYLRdk~~r~ST  234 (236)
                      |++++|+|||||||||++.++-+.
T Consensus        85 Vl~~~kvrRaKLyYLR~~~gK~ar  108 (113)
T TIGR01024        85 VVRRGKVRRAKLYYLRERRGKAAR  108 (113)
T ss_pred             EEEeCccchhheeeeccCcchhhe
Confidence            999999999999999999887544

This model describes bacterial ribosomoal protein L19 and its chloroplast equivalent. Putative mitochondrial L19 are found in several species (but not Saccharomyces cerevisiae) and score between trusted and noise cutoffs.

>PF01245 Ribosomal_L19: Ribosomal protein L19; InterPro: IPR001857 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=100.00  E-value=4.8e-41  Score=269.53  Aligned_cols=105  Identities=42%  Similarity=0.848  Sum_probs=99.2

Q ss_pred             HHHHHHHHHHhhhcCCCCCCCCCCCEEEEEEEeec-CccccceEEEEEEEEecCCccceEEEEeeeCCeeEEEEeeccCC
Q 026573          126 MGILNKRAVEASESERPIPDIRTGDVVEIKLEVPE-NRRRLSIYKGIVMSRQNAGIHTTIRIRRIIAGIGVEIVFPLYSP  204 (236)
Q Consensus       126 M~iLe~~~ie~~~~kk~iP~f~~GDiV~V~~~i~E-~K~RiQ~F~GVVIa~r~~Gl~sTFtLRnii~GvGVEr~FpLySP  204 (236)
                      |++|  +++|+.+.+.++|+|++||+|+|++.+.| +|+|+|.|+|+||+++|+|+++||||||+++|+|||++||||||
T Consensus         1 ~~~i--~~~e~~~~~~~~p~f~~GD~v~V~~~i~e~~k~r~q~f~GvvIa~~~~g~~ssftlR~~~~g~gVE~~f~l~SP   78 (113)
T PF01245_consen    1 MNLI--EEVEREQIKKDIPEFRVGDTVRVTYKISEGNKERIQVFEGVVIARRRRGLNSSFTLRNISQGVGVERVFPLYSP   78 (113)
T ss_dssp             -HHH--HHHHHTTCSSSSSSSSSSSEEEEEEEEESSSSEEEEEEEEEEEEEEBSSTSSEEEEEEEETTEEEEEEEETTST
T ss_pred             ChHH--HHHHHHHhhcCCCCcCCCCEEEEEEEEecCCCceeEEEEEEEEEEECCCCCeeEEEEEEecCccEEEEEEcCCC
Confidence            5666  68888888999999999999999999998 89999999999999999999999999999999999999999999


Q ss_pred             ccceEEEeeecccCCcceeeeccCCCCC
Q 026573          205 NIKEIKVVSHRKVRRARLYYLRDKLPRL  232 (236)
Q Consensus       205 ~I~~IeVlrr~KVRRAKLYYLRdk~~r~  232 (236)
                      .|++|+|++++|+|||||||||++.++.
T Consensus        79 ~I~~IeV~~~~kvrRaKLyYLR~~~gK~  106 (113)
T PF01245_consen   79 LIKSIEVLRRGKVRRAKLYYLRDRKGKA  106 (113)
T ss_dssp             TEEEEEEEEEBECSSSSTGGGGCTTSHH
T ss_pred             CeEEEEEEEecccchhhhhhhhcCccch
Confidence            9999999999999999999999988753

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein L19 is one of the proteins from the large ribosomal subunit [, ]. In Escherichia coli, L19 is known to be located at the 30S-50S ribosomal subunit interface [] and may play a role in the structure and function of the aminoacyl-tRNA binding site. It belongs to a family of ribosomal proteins, including L19 from bacteria and the chloroplasts of red algae. L19 is a protein of 120 to 130 amino-acid residues.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3HUZ_T 3V2D_T 3I8I_R 2XG2_T 2V49_T 2XUX_T 3HUX_T 3I9C_R 3V25_T 3UZ2_R ....

>COG0335 RplS Ribosomal protein L19 [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=1.1e-40  Score=269.06  Aligned_cols=100  Identities=41%  Similarity=0.785  Sum_probs=95.7

Q ss_pred             HHHHhhhcCCCCCCCCCCCEEEEEEEeec-CccccceEEEEEEEEecCCccceEEEEeeeCCeeEEEEeeccCCccceEE
Q 026573          132 RAVEASESERPIPDIRTGDVVEIKLEVPE-NRRRLSIYKGIVMSRQNAGIHTTIRIRRIIAGIGVEIVFPLYSPNIKEIK  210 (236)
Q Consensus       132 ~~ie~~~~kk~iP~f~~GDiV~V~~~i~E-~K~RiQ~F~GVVIa~r~~Gl~sTFtLRnii~GvGVEr~FpLySP~I~~Ie  210 (236)
                      +.+++.|.++++|+|+|||||+|++++.| +|+|+|.|+|+||+++|+|+++|||||++++|+|||++||+|||.|++|+
T Consensus         7 ~~le~~q~~~~iP~f~~GDtvrv~vki~Eg~keR~Q~FeGvVia~r~~G~~~tftvRkis~G~GVEr~Fp~~SP~Ie~Ie   86 (115)
T COG0335           7 QQLEQEQIKKDIPSFRPGDTVRVHVKIVEGSKERVQAFEGVVIARRGRGISETFTVRKISYGVGVERVFPLHSPLIESIE   86 (115)
T ss_pred             HHHHHHHHHhhCCCCCCCCEEEEEEEEEeCCeEEEeeeeEEEEEECCCCccceEEEEEeecCceEEEEeecCCCceeEEE
Confidence            56777777888999999999999999999 89999999999999999999999999999999999999999999999999


Q ss_pred             EeeecccCCcceeeeccCCCC
Q 026573          211 VVSHRKVRRARLYYLRDKLPR  231 (236)
Q Consensus       211 Vlrr~KVRRAKLYYLRdk~~r  231 (236)
                      |+++|+||||||||||++..+
T Consensus        87 V~rrGkVRRAKLYYLR~~~GK  107 (115)
T COG0335          87 VVRRGKVRRAKLYYLRERRGK  107 (115)
T ss_pred             EEecCceeeeeeEeeeccccc
Confidence            999999999999999998765

>KOG1698 consensus Mitochondrial/chloroplast ribosomal protein L19 [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=2.7e-40  Score=287.22  Aligned_cols=179  Identities=40%  Similarity=0.578  Sum_probs=149.9

Q ss_pred             eeeeec---ccccccccceecccccceEEeecchhhhhcchhHHHHHHHhhhhcCCeeeeeeccccchhhhhhcCCCCCC
Q 026573           42 VSVSAK---PIGWNLGFFVNAQVKDSFVVRAEANEEAEANESIEEEQNEAVQAQGDVVVAVEAESEDKVEEEEVKAPRKP  118 (236)
Q Consensus        42 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pp~k~  118 (236)
                      +.++|+   +..|++.+.+.....++|+..++.-..+               +-++. .+.+...++..-.+..++.+.-
T Consensus         6 ~~~~r~~~~~~a~~~~v~l~~~~~~~~~~~~e~~~~a---------------~~~~~-~~~~~~~~~~~~~~~~~~f~~~   69 (201)
T KOG1698|consen    6 LGFDRFPMFRAASYRNVSLKGKWFSSFIAISEERCFA---------------PTKRP-SVNEPSPESPCVVEQYPEFLPL   69 (201)
T ss_pred             eeeecccccchhhhheeecccceeeeecccccccccc---------------CCCCc-ccccCCCCCccccccCcccccc
Confidence            455555   3566666666666777888766652222               22222 1234444444455566777777


Q ss_pred             ccchhhHHHHHHHHHHHhhhcCCCCCCCCCCCEEEEEEEeecCccccceEEEEEEEEecCCccceEEEEeeeCCeeEEEE
Q 026573          119 RVKLGDIMGILNKRAVEASESERPIPDIRTGDVVEIKLEVPENRRRLSIYKGIVMSRQNAGIHTTIRIRRIIAGIGVEIV  198 (236)
Q Consensus       119 r~KL~dlM~iLe~~~ie~~~~kk~iP~f~~GDiV~V~~~i~E~K~RiQ~F~GVVIa~r~~Gl~sTFtLRnii~GvGVEr~  198 (236)
                      +...+++|++|++++++...+.+++|+|++||+|+|++.+++++.++..|.||||.++|+|+++||+|||+++|+|||..
T Consensus        70 ~~~~~~~~e~Ldr~a~~~rr~~r~iPe~~~G~Iv~V~s~~p~~k~k~s~f~Gi~I~R~~~Gl~atf~LRnvIagvGVEi~  149 (201)
T KOG1698|consen   70 RKVAKRIMEILDRQAVLERRKVRDIPEFKVGSIVRVTSEDPENKRKVSRFKGICIRRRNAGLNATFLLRNVIAGVGVEIV  149 (201)
T ss_pred             hhHHHHHHHhhCHHHHHHHHhcccCCccccccEEEEEecCCccCCceeEEEEEEEEecccCCcceEEeeehhhCceeEEE
Confidence            88899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeccCCccceEEEeeecccCCcceeeeccCCCCCCCCC
Q 026573          199 FPLYSPNIKEIKVVSHRKVRRARLYYLRDKLPRLSTFK  236 (236)
Q Consensus       199 FpLySP~I~~IeVlrr~KVRRAKLYYLRdk~~r~STf~  236 (236)
                      ||||||+|++|+|+++.|+|||+||||||.+++|||||
T Consensus       150 ~pLYsP~IkeI~Vlk~~k~rra~LyYLRd~lp~lstfd  187 (201)
T KOG1698|consen  150 FPLYSPNIKEIKVLKLEKRRRAKLYYLRDALPELSTFD  187 (201)
T ss_pred             EeccCCCeeEEEEechhhcccchhhhhhccccccCchh
Confidence            99999999999999999999999999999999999996

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	236
3bbo_R	233	Homology Model For The Spinach Chloroplast 50s Subu		3e-45
1pnu_N	125	Crystal Structure Of A Streptomycin Dependent Ribos		5e-09
1nkw_N	166	Crystal Structure Of The Large Ribosomal Subunit Fr		5e-09
1vs6_P	115	Crystal Structure Of The Bacterial Ribosome From Es		4e-08
1p85_N	114	Real Space Refined Coordinates Of The 50s Subunit F		4e-08
2ftc_K	98	Structural Model For The Large Subunit Of The Mamma		2e-07
3tve_R	137	Crystal Structure Analysis Of Ribosomal Decoding. T		3e-07
3fin_T	138	T. Thermophilus 70s Ribosome In Complex With Mrna,		3e-07
2j01_T	146	Structure Of The Thermus Thermophilus 70s Ribosome		3e-07
3pyo_P	137	Crystal Structure Of A Complex Containing Domain 3		4e-07
1vsa_N	146	Crystal Structure Of A 70s Ribosome-Trna Complex Re		6e-07

>pdb|3BBO|R Chain R, Homology Model For The Spinach Chloroplast 50s Subunit Fitted To 9.4a Cryo-Em Map Of The 70s Chlororibosome Length = 233

Iteration: 1
 Score =  178 bits (451), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 89/122 (72%), Positives = 100/122 (81%)
Query: 115 PRKPRVKLGDIMGILNKRAVEASESERPIPDIRTGDVVEIKLEVPENRRRLSIYKGIVMS 174
           PR+ RVKLGDIMGILNK+AV A+E  RP+P IRTGD+V+I+LEVPEN+RRLS+YKGIV+S
Sbjct: 112 PRQQRVKLGDIMGILNKKAVHAAEELRPVPGIRTGDIVQIRLEVPENKRRLSVYKGIVIS 171
Query: 175 RQNXXXXXXXXXXXXXXXXXVEIVFPLYSPNIKEIKVVSHRKVRRARLYYLRDKLPRLST 234
           RQN                 VEIVFPLYSPNIKEIKVVSHRKVR+ARLYYLRDKLPRLST
Sbjct: 172 RQNAGIHTTIRIRRIIAGVGVEIVFPLYSPNIKEIKVVSHRKVRKARLYYLRDKLPRLST 231
Query: 235 FK 236
           FK
Sbjct: 232 FK 233

>pdb|1PNU|N Chain N, Crystal Structure Of A Streptomycin Dependent Ribosome From Escherichia Coli, 50s Subunit Of 70s Ribosome. This File, 1pnu, Contains Only Molecules Of The 50s Ribosomal Subunit. The 30s Subunit, Mrna, P-Site Trna, And A-Site Trna Are In The Pdb File 1pns. Length = 125

Iteration: 1
 Score = 57.8 bits (138), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 34/97 (35%), Positives = 50/97 (51%), Gaps = 2/97 (2%)
Query: 132 RAVEASESERPIPDIRTGDVVEIKLEVPE-NRRRLSIYKGIVMSRQNXXXXXXXXXXXXX 190
           R +E   + R +PD R GD V +  +V E NR R   ++G+V++                
Sbjct: 13  RGIEQDHT-RQLPDFRPGDTVRVDTKVREGNRTRSQAFEGVVIAINGSGSRKSFTVRKIS 71
Query: 191 XXXXVEIVFPLYSPNIKEIKVVSHRKVRRARLYYLRD 227
               VE VFP  SP + ++ +V   KVRRA+LYYLR+
Sbjct: 72  FGEGVERVFPFASPLVNQVTIVERGKVRRAKLYYLRE 108

>pdb|1NKW|N Chain N, Crystal Structure Of The Large Ribosomal Subunit From Deinococcus Radiodurans Length = 166

Iteration: 1
 Score = 57.8 bits (138), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 34/97 (35%), Positives = 50/97 (51%), Gaps = 2/97 (2%)
Query: 132 RAVEASESERPIPDIRTGDVVEIKLEVPE-NRRRLSIYKGIVMSRQNXXXXXXXXXXXXX 190
           R +E   + R +PD R GD V +  +V E NR R   ++G+V++                
Sbjct: 14  RGIEQDHT-RQLPDFRPGDTVRVDTKVREGNRTRSQAFEGVVIAINGSGSRKSFTVRKIS 72
Query: 191 XXXXVEIVFPLYSPNIKEIKVVSHRKVRRARLYYLRD 227
               VE VFP  SP + ++ +V   KVRRA+LYYLR+
Sbjct: 73  FGEGVERVFPFASPLVNQVTIVERGKVRRAKLYYLRE 109

>pdb|1VS6|P Chain P, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli In Complex With The Antibiotic Kasugamyin At 3.5a Resolution. This File Contains The 50s Subunit Of One 70s Ribosome. The Entire Crystal Structure Contains Two 70s Ribosomes And Is Described In Remark 400. Length = 115

Iteration: 1
 Score = 55.1 bits (131), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 32/106 (30%), Positives = 57/106 (53%), Gaps = 1/106 (0%)
Query: 132 RAVEASESERPIPDIRTGDVVEIKLEVPE-NRRRLSIYKGIVMSRQNXXXXXXXXXXXXX 190
           + +E  + ++ +P  R GD VE+K+ V E +++RL  ++G+V++ +N             
Sbjct: 6   KQLEQEQMKQDVPSFRPGDTVEVKVWVVEGSKKRLQAFEGVVIAIRNRGLHSAFTVRKIS 65
Query: 191 XXXXVEIVFPLYSPNIKEIKVVSHRKVRRARLYYLRDKLPRLSTFK 236
               VE VF  +SP +  I V     VR+A+LYYLR++  + +  K
Sbjct: 66  NGEGVERVFQTHSPVVDSISVKRRGAVRKAKLYYLRERTGKAARIK 111

>pdb|1P85|N Chain N, Real Space Refined Coordinates Of The 50s Subunit Fitted Into The Low Resolution Cryo-Em Map Of The Ef-G.Gtp State Of E. Coli 70s Ribosome Length = 114

Iteration: 1
 Score = 54.7 bits (130), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 32/106 (30%), Positives = 57/106 (53%), Gaps = 1/106 (0%)
Query: 132 RAVEASESERPIPDIRTGDVVEIKLEVPE-NRRRLSIYKGIVMSRQNXXXXXXXXXXXXX 190
           + +E  + ++ +P  R GD VE+K+ V E +++RL  ++G+V++ +N             
Sbjct: 5   KQLEQEQMKQDVPSFRPGDTVEVKVWVVEGSKKRLQAFEGVVIAIRNRGLHSAFTVRKIS 64
Query: 191 XXXXVEIVFPLYSPNIKEIKVVSHRKVRRARLYYLRDKLPRLSTFK 236
               VE VF  +SP +  I V     VR+A+LYYLR++  + +  K
Sbjct: 65  NGEGVERVFQTHSPVVDSISVKRRGAVRKAKLYYLRERTGKAARIK 110

>pdb|2FTC|K Chain K, Structural Model For The Large Subunit Of The Mammalian Mitochondrial Ribosome Length = 98

Iteration: 1
 Score = 52.4 bits (124), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 42/94 (44%)
Query: 143 IPDIRTGDVVEIKLEVPENRRRLSIYKGIVMSRQNXXXXXXXXXXXXXXXXXVEIVFPLY 202
           IP+   G ++ +    P    ++S + GI + R                   VEI F LY
Sbjct: 1   IPEFYVGSILRVTTADPYASGKISQFLGICIQRSGRGLGATFILRNVIEGQGVEICFELY 60
Query: 203 SPNIKEIKVVSHRKVRRARLYYLRDKLPRLSTFK 236
           +P ++EI+VV   K     L YLRD LP  STF 
Sbjct: 61  NPRVQEIQVVKLEKRLDDSLLYLRDALPEYSTFD 94

>pdb|3TVE|R Chain R, Crystal Structure Analysis Of Ribosomal Decoding. This Entry Contains The 50s Ribosomal Subunit Of The First 70s Molecule In The Asymmetric Unit For The Cognate Trna-Leu Complex Length = 137

Iteration: 1
 Score = 52.0 bits (123), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 31/95 (32%), Positives = 51/95 (53%), Gaps = 1/95 (1%)
Query: 134 VEASESERPIPDIRTGDVVEIKLEVPE-NRRRLSIYKGIVMSRQNXXXXXXXXXXXXXXX 192
           VE+      +P+ R GD V +  +V E NR R+  ++GIV+  +                
Sbjct: 10  VESRYVRTDLPEFRPGDTVRVSYKVKEGNRTRIQDFEGIVIRIRRNGFNTTFTVRKVSYG 69
Query: 193 XXVEIVFPLYSPNIKEIKVVSHRKVRRARLYYLRD 227
             VE +FPL+SP I++I +V   + RRA+LY++R+
Sbjct: 70  VGVERIFPLHSPLIQKIDIVQRGRARRAKLYFIRN 104

>pdb|3FIN|T Chain T, T. Thermophilus 70s Ribosome In Complex With Mrna, Trnas And Ef- Tu.Gdp.Kirromycin Ternary Complex, Fitted To A 6.4 A Cryo-Em Map. This File Contains The 50s Subunit Length = 138

Iteration: 1
 Score = 52.0 bits (123), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 31/95 (32%), Positives = 51/95 (53%), Gaps = 1/95 (1%)
Query: 134 VEASESERPIPDIRTGDVVEIKLEVPE-NRRRLSIYKGIVMSRQNXXXXXXXXXXXXXXX 192
           VE+      +P+ R GD V +  +V E NR R+  ++GIV+  +                
Sbjct: 10  VESRYVRTDLPEFRPGDTVRVSYKVKEGNRTRIQDFEGIVIRIRRNGFNTTFTVRKVSYG 69
Query: 193 XXVEIVFPLYSPNIKEIKVVSHRKVRRARLYYLRD 227
             VE +FPL+SP I++I +V   + RRA+LY++R+
Sbjct: 70  VGVERIFPLHSPLIQKIDIVQRGRARRAKLYFIRN 104

>pdb|2J01|T Chain T, Structure Of The Thermus Thermophilus 70s Ribosome Complexed With Mrna, Trna And Paromomycin (Part 2 Of 4). This File Contains The 50s Subunit From Molecule I. Length = 146

Iteration: 1
 Score = 51.6 bits (122), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 31/95 (32%), Positives = 51/95 (53%), Gaps = 1/95 (1%)
Query: 134 VEASESERPIPDIRTGDVVEIKLEVPE-NRRRLSIYKGIVMSRQNXXXXXXXXXXXXXXX 192
           VE+      +P+ R GD V +  +V E NR R+  ++GIV+  +                
Sbjct: 10  VESRYVRTDLPEFRPGDTVRVSYKVKEGNRTRIQDFEGIVIRIRRNGFNTTFTVRKVSYG 69
Query: 193 XXVEIVFPLYSPNIKEIKVVSHRKVRRARLYYLRD 227
             VE +FPL+SP I++I +V   + RRA+LY++R+
Sbjct: 70  VGVERIFPLHSPLIQKIDIVQRGRARRAKLYFIRN 104

>pdb|3PYO|P Chain P, Crystal Structure Of A Complex Containing Domain 3 From The Psiv Igr Ires Rna Bound To The 70s Ribosome. This File Contains The 50s Subunit Of The First 70s Ribosome. Length = 137

Iteration: 1
 Score = 51.2 bits (121), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 31/95 (32%), Positives = 51/95 (53%), Gaps = 1/95 (1%)
Query: 134 VEASESERPIPDIRTGDVVEIKLEVPE-NRRRLSIYKGIVMSRQNXXXXXXXXXXXXXXX 192
           VE+      +P+ R GD V +  +V E NR R+  ++GIV+  +                
Sbjct: 10  VESRYVRTDLPEFRPGDTVRVSYKVKEGNRTRIQDFEGIVIRIRRNGFNTTFTVRKVSYG 69
Query: 193 XXVEIVFPLYSPNIKEIKVVSHRKVRRARLYYLRD 227
             VE +FPL+SP I++I +V   + RRA+LY++R+
Sbjct: 70  VGVERIFPLHSPLIQKIDIVQRGRARRAKLYFIRN 104

>pdb|1VSA|N Chain N, Crystal Structure Of A 70s Ribosome-Trna Complex Reveals Functional Interactions And Rearrangements. This File, 1vsa, Contains The 50s Ribosome Subunit. 30s Ribosome Subunit Is In The File 2ow8 Length = 146

Iteration: 1
 Score = 50.8 bits (120), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 31/95 (32%), Positives = 51/95 (53%), Gaps = 1/95 (1%)
Query: 134 VEASESERPIPDIRTGDVVEIKLEVPE-NRRRLSIYKGIVMSRQNXXXXXXXXXXXXXXX 192
           VE+      +P+ R GD V +  +V E NR R+  ++GIV+  +                
Sbjct: 10  VESRYVRTDLPEFRPGDTVRVSYKVKEGNRTRIQDFEGIVIRIRRNGFNTTFTVRKVSYG 69
Query: 193 XXVEIVFPLYSPNIKEIKVVSHRKVRRARLYYLRD 227
             VE +FPL+SP I++I +V   + RRA+LY++R+
Sbjct: 70  VGVERIFPLHSPLIQKIDIVQRGRARRAKLYFIRN 104
  Database: pdbaa

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	236
3bbo_R	233	Ribosomal protein L19; large ribosomal subunit, sp	6e-56
2ftc_K	98	39S ribosomal protein L19, mitochondrial; mitochon	5e-37
3r8s_P	114	50S ribosomal protein L19; protein biosynthesis, R	8e-30
3v2d_T	146	50S ribosomal protein L19; ribosome associated inh	2e-28
2zjr_M	166	50S ribosomal protein L19; ribosome, large ribosom	2e-26

>3bbo_R Ribosomal protein L19; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} Length = 233

 Score =  177 bits (450), Expect = 6e-56
 Identities = 130/245 (53%), Positives = 158/245 (64%), Gaps = 21/245 (8%)

Query: 1   MGSQVLPQALHWIPRSSTQCIPSKRLGFSTVLSRGPFVSHGVS---------VSAKPIGW 51
           M S+VLPQAL  IP + +   P  +      +      S   +          S+     
Sbjct: 1   MASKVLPQALLVIPSNHSLQCPPLKKQLGFPIDSNRRFSLSSNCRSNLMVSRASSNLFSS 60

Query: 52  NLGFFVNAQVKDSFVVRAEANEEAEANESIEEEQNEAVQAQGDVVVAVEAESEDKVEEEE 111
           N     +   ++SFVVR+EA + ++A         E                 +   E E
Sbjct: 61  NFSSIFSFPARNSFVVRSEAEDSSDAPAESVAVVAEE------------ELPVESEAEAE 108

Query: 112 VKAPRKPRVKLGDIMGILNKRAVEASESERPIPDIRTGDVVEIKLEVPENRRRLSIYKGI 171
            + PR+ RVKLGDIMGILNK+AV A+E  RP+P IRTGD+V+I+LEVPEN+RRLS+YKGI
Sbjct: 109 ERPPRQQRVKLGDIMGILNKKAVHAAEELRPVPGIRTGDIVQIRLEVPENKRRLSVYKGI 168

Query: 172 VMSRQNAGIHTTIRIRRIIAGIGVEIVFPLYSPNIKEIKVVSHRKVRRARLYYLRDKLPR 231
           V+SRQNAGIHTTIRIRRIIAG+GVEIVFPLYSPNIKEIKVVSHRKVR+ARLYYLRDKLPR
Sbjct: 169 VISRQNAGIHTTIRIRRIIAGVGVEIVFPLYSPNIKEIKVVSHRKVRKARLYYLRDKLPR 228

Query: 232 LSTFK 236
           LSTFK
Sbjct: 229 LSTFK 233

>2ftc_K 39S ribosomal protein L19, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} Length = 98

 Score =  124 bits (314), Expect = 5e-37
 Identities = 36/94 (38%), Positives = 51/94 (54%)

Query: 143 IPDIRTGDVVEIKLEVPENRRRLSIYKGIVMSRQNAGIHTTIRIRRIIAGIGVEIVFPLY 202
           IP+   G ++ +    P    ++S + GI + R   G+  T  +R +I G GVEI F LY
Sbjct: 1   IPEFYVGSILRVTTADPYASGKISQFLGICIQRSGRGLGATFILRNVIEGQGVEICFELY 60

Query: 203 SPNIKEIKVVSHRKVRRARLYYLRDKLPRLSTFK 236
           +P ++EI+VV   K     L YLRD LP  STF 
Sbjct: 61  NPRVQEIQVVKLEKRLDDSLLYLRDALPEYSTFD 94

>3r8s_P 50S ribosomal protein L19; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_N 1p86_N 2awb_P 2gya_N 2gyc_N 2aw4_P 2i2v_P 2j28_P 2i2t_P* 2qao_P* 2qba_P* 2qbc_P* 2qbe_P 2qbg_P 2qbi_P* 2qbk_P* 2qov_P 2qox_P 2qoz_P* 2qp1_P* ... Length = 114

 Score =  106 bits (267), Expect = 8e-30
 Identities = 37/97 (38%), Positives = 63/97 (64%), Gaps = 1/97 (1%)

Query: 132 RAVEASESERPIPDIRTGDVVEIKLEVPE-NRRRLSIYKGIVMSRQNAGIHTTIRIRRII 190
           + +E  + ++ +P  R GD VE+K+ V E +++RL  ++G+V++ +N G+H+   +R+I 
Sbjct: 5   KQLEQEQMKQDVPSFRPGDTVEVKVWVVEGSKKRLQAFEGVVIAIRNRGLHSAFTVRKIS 64

Query: 191 AGIGVEIVFPLYSPNIKEIKVVSHRKVRRARLYYLRD 227
            G GVE VF  +SP +  I V     VR+A+LYYLR+
Sbjct: 65  NGEGVERVFQTHSPVVDSISVKRRGAVRKAKLYYLRE 101

>3v2d_T 50S ribosomal protein L19; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_S 2hgj_S 2hgu_S 2j03_T 2jl6_T 2jl8_T 2v47_T 2v49_T 2wdi_T 2wdj_T 2wdl_T 2wdn_T 2wh2_T 2wh4_T 2wrj_T 2wrl_T 2wro_T 2wrr_T 2x9s_T 2x9u_T ... Length = 146

 Score =  104 bits (260), Expect = 2e-28
 Identities = 37/97 (38%), Positives = 63/97 (64%), Gaps = 1/97 (1%)

Query: 132 RAVEASESERPIPDIRTGDVVEIKLEVPE-NRRRLSIYKGIVMSRQNAGIHTTIRIRRII 190
           + VE+      +P+ R GD V +  +V E NR R+  ++GIV+  +  G +TT  +R++ 
Sbjct: 8   KLVESRYVRTDLPEFRPGDTVRVSYKVKEGNRTRIQDFEGIVIRIRRNGFNTTFTVRKVS 67

Query: 191 AGIGVEIVFPLYSPNIKEIKVVSHRKVRRARLYYLRD 227
            G+GVE +FPL+SP I++I +V   + RRA+LY++R+
Sbjct: 68  YGVGVERIFPLHSPLIQKIDIVQRGRARRAKLYFIRN 104

>2zjr_M 50S ribosomal protein L19; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: b.34.5.6 PDB: 1nwx_N* 1nwy_N* 1sm1_N* 1xbp_N* 2zjp_M* 2zjq_M 1nkw_N 3cf5_M* 3dll_M* 3pio_M* 3pip_M* 1pnu_N 1pny_N 1vor_Q 1vou_Q 1vow_Q 1voy_Q 1vp0_Q Length = 166

 Score = 99.5 bits (248), Expect = 2e-26
 Identities = 37/92 (40%), Positives = 56/92 (60%), Gaps = 1/92 (1%)

Query: 137 SESERPIPDIRTGDVVEIKLEVPE-NRRRLSIYKGIVMSRQNAGIHTTIRIRRIIAGIGV 195
            +  R +PD R GD V +  +V E NR R   ++G+V++   +G   +  +R+I  G GV
Sbjct: 18  QDHTRQLPDFRPGDTVRVDTKVREGNRTRSQAFEGVVIAINGSGSRKSFTVRKISFGEGV 77

Query: 196 EIVFPLYSPNIKEIKVVSHRKVRRARLYYLRD 227
           E VFP  SP + ++ +V   KVRRA+LYYLR+
Sbjct: 78  ERVFPFASPLVNQVTIVERGKVRRAKLYYLRE 109

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	236
3bbo_R	233	Ribosomal protein L19; large ribosomal subunit, sp	100.0
2ftc_K	98	39S ribosomal protein L19, mitochondrial; mitochon	100.0
3r8s_P	114	50S ribosomal protein L19; protein biosynthesis, R	100.0
2zjr_M	166	50S ribosomal protein L19; ribosome, large ribosom	100.0
3v2d_T	146	50S ribosomal protein L19; ribosome associated inh	100.0
2vc8_A	84	Enhancer of mRNA-decapping protein 3; P-BODY compo	80.86

>3bbo_R Ribosomal protein L19; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}

Probab=100.00  E-value=9.1e-74  Score=503.26  Aligned_cols=222  Identities=63%  Similarity=0.935  Sum_probs=112.1

Q ss_pred             CCccccccceecccCC-CCCCCC-CCceeeeeeecC----CCCcccceeeeecccccccccceecc----cccceEEeec
Q 026573            1 MGSQVLPQALHWIPRS-STQCIP-SKRLGFSTVLSR----GPFVSHGVSVSAKPIGWNLGFFVNAQ----VKDSFVVRAE   70 (236)
Q Consensus         1 m~~~~l~q~~~~~p~~-~~~~~~-~~~l~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~   70 (236)
                      |||++|||||+++|++ |.|||| |++||||+++.+    +.+.++++.|+|+ +|++|||+|+++    +|++||+|||
T Consensus         1 m~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~s~~~~~~~~~~~~~~-~s~~~~~~~~~~~~~~~~~~f~~r~~   79 (233)
T 3bbo_R            1 MASKVLPQALLVIPSNHSLQCPPLKKQLGFPIDSNRRFSLSSNCRSNLMVSRA-SSNLFSSNFSSIFSFPARNSFVVRSE   79 (233)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CcccccchhhhccccccccCCCCChhhcccccccccccccccccccceEeecc-ccccccccccchhccccccceeEeec
Confidence            9999999999999997 568886 899999965533    3334456778877 899999999874    9999999999


Q ss_pred             chhhhhcchhHHHHHHHhhhhcCCeeeeeecccc-chhhhhhcCCCCCCccchhhHHHHHHHHHHHhhhcCCCCCCCCCC
Q 026573           71 ANEEAEANESIEEEQNEAVQAQGDVVVAVEAESE-DKVEEEEVKAPRKPRVKLGDIMGILNKRAVEASESERPIPDIRTG  149 (236)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~pp~k~r~KL~dlM~iLe~~~ie~~~~kk~iP~f~~G  149 (236)
                      +++  +++++++++           +++.|+++| ..++|++.+||++++.||+++|++|+++.|++.++++++|+|++|
T Consensus        80 ~~~--~~~~~~~~~-----------~~~~e~~~~~~~~~~~~~~~p~~~~~k~~~iM~~L~re~ie~~q~kkdiPeFr~G  146 (233)
T 3bbo_R           80 AED--SSDAPAESV-----------AVVAEEELPVESEAEAEERPPRQQRVKLGDIMGILNKKAVHAAEELRPVPGIRTG  146 (233)
T ss_dssp             ------------------------------------------------------CCSSSCSTTHHHHTTCCSCCSSSCCC
T ss_pred             ccc--CCCCcccch-----------hhcccccchhhhhhccccCCCCcchhHHHHHHHHHHHHHHHHHhhccCCCccCCC
Confidence            953  223322211           122233222 223344449999999999999999999999999999999999999


Q ss_pred             CEEEEEEEeecCccccceEEEEEEEEecCCccceEEEEeeeCCeeEEEEeeccCCccceEEEeeecccCCcceeeeccCC
Q 026573          150 DVVEIKLEVPENRRRLSIYKGIVMSRQNAGIHTTIRIRRIIAGIGVEIVFPLYSPNIKEIKVVSHRKVRRARLYYLRDKL  229 (236)
Q Consensus       150 DiV~V~~~i~E~K~RiQ~F~GVVIa~r~~Gl~sTFtLRnii~GvGVEr~FpLySP~I~~IeVlrr~KVRRAKLYYLRdk~  229 (236)
                      |||+|++++.|+|+|+|.|+||||+++|+|+++||||||+++|+|||++||||||+|++|+|+++|||||||||||||++
T Consensus       147 DtV~V~vkI~E~KeRiQ~FeGVVIarr~~Gl~sTFTVRkis~GvGVER~FpLhSP~I~kIEVvRrgKVRRAKLYYLRd~l  226 (233)
T 3bbo_R          147 DIVQIRLEVPENKRRLSVYKGIVISRQNAGIHTTIRIRRIIAGVGVEIVFPLYSPNIKEIKVVSHRKVRKARLYYLRDKL  226 (233)
T ss_dssp             SCCCCCCCBCCCSSCCSCCBCCCCCSCBCCCSSSCBCBCCCCCSTTTCCCCCBSSSSSCCCCCCCSCCCCSCSSCCCCSS
T ss_pred             CEEEEEEEeccCcceecceEEEEEEEeCCCCCceEEEEEecCCceEEEEEecCCCccceEEEEeccccchhhhhhhhcCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCC
Q 026573          230 PRLSTFK  236 (236)
Q Consensus       230 ~r~STf~  236 (236)
                      ++|||||
T Consensus       227 p~~STf~  233 (233)
T 3bbo_R          227 PRLSTFK  233 (233)
T ss_dssp             TTCSSCC
T ss_pred             cccccCC
Confidence            9999997

>2ftc_K 39S ribosomal protein L19, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus}

Probab=100.00  E-value=3.5e-44  Score=281.52  Aligned_cols=94  Identities=38%  Similarity=0.693  Sum_probs=92.8

Q ss_pred             CCCCCCCCEEEEEEEeecCccccceEEEEEEEEecCCccceEEEEeeeCCeeEEEEeeccCCccceEEEeeecccCCcce
Q 026573          143 IPDIRTGDVVEIKLEVPENRRRLSIYKGIVMSRQNAGIHTTIRIRRIIAGIGVEIVFPLYSPNIKEIKVVSHRKVRRARL  222 (236)
Q Consensus       143 iP~f~~GDiV~V~~~i~E~K~RiQ~F~GVVIa~r~~Gl~sTFtLRnii~GvGVEr~FpLySP~I~~IeVlrr~KVRRAKL  222 (236)
                      +|+|++||||+|++++.++|+|+|.|+|+||+++|+|+++||||||+++|+|||++||||||.|++|||++++|||||||
T Consensus         1 iP~f~~GDtv~V~~~i~g~k~R~q~F~GvvI~~~~~G~~~tftvRki~~gvGVEr~fpl~SP~I~~IeV~r~gkvRRaKL   80 (98)
T 2ftc_K            1 IPEFYVGSILRVTTADPYASGKISQFLGICIQRSGRGLGATFILRNVIEGQGVEICFELYNPRVQEIQVVKLEKRLDDSL   80 (98)
T ss_pred             CCccCCCCEEEEEEEECCCceEeeeEEEEEEEEECCCCCcEEEEEEeccCceEEEEEecCCCceeEEEEEEcCcccceeE
Confidence            69999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeeccCCCCCCCCC
Q 026573          223 YYLRDKLPRLSTFK  236 (236)
Q Consensus       223 YYLRdk~~r~STf~  236 (236)
                      |||||+++++|||+
T Consensus        81 yYLR~~~~~~st~~   94 (98)
T 2ftc_K           81 LYLRDALPEYSTFD   94 (98)
T ss_pred             EEeccCCcccceec
Confidence            99999999999996

>3r8s_P 50S ribosomal protein L19; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_N 1p86_N 2awb_P 2gya_N 2gyc_N 2aw4_P 2i2v_P 2j28_P 2i2t_P* 2qao_P* 2qba_P* 2qbc_P* 2qbe_P 2qbg_P 2qbi_P* 2qbk_P* 2qov_P 2qox_P 2qoz_P* 2qp1_P* ...

Probab=100.00  E-value=1.8e-42  Score=278.13  Aligned_cols=100  Identities=37%  Similarity=0.708  Sum_probs=96.2

Q ss_pred             HHHHhhhcCCCCCCCCCCCEEEEEEEeec-CccccceEEEEEEEEecCCccceEEEEeeeCCeeEEEEeeccCCccceEE
Q 026573          132 RAVEASESERPIPDIRTGDVVEIKLEVPE-NRRRLSIYKGIVMSRQNAGIHTTIRIRRIIAGIGVEIVFPLYSPNIKEIK  210 (236)
Q Consensus       132 ~~ie~~~~kk~iP~f~~GDiV~V~~~i~E-~K~RiQ~F~GVVIa~r~~Gl~sTFtLRnii~GvGVEr~FpLySP~I~~Ie  210 (236)
                      +.+|+.|+++++|+|++||||+|++++.| +|+|+|.|+|+||+++|+|+++||||||+++|+|||++||||||+|++|+
T Consensus         5 ~~~e~~~~~~~iP~f~~GDtv~V~~~i~EG~keRiQ~F~GvvI~~~~~G~~~tftvRki~~gvGVEr~fpl~SP~I~~Ie   84 (114)
T 3r8s_P            5 KQLEQEQMKQDVPSFRPGDTVEVKVWVVEGSKKRLQAFEGVVIAIRNRGLHSAFTVRKISNGEGVERVFQTHSPVVDSIS   84 (114)
T ss_dssp             HHHHGGGCCSCCCCCCTTCEEEEEEEEEETTEEEEEEEEEEEEEEECCGGGCEEEEEEEETTEEEEEEEETTCTTEEEEE
T ss_pred             HHHHHHHhccCCCccCCCCEEEEEEEEecCCceeeeeEEEEEEEEECCCCCeEEEEEEecCCccEEEEEecCCCccceEE
Confidence            57788888999999999999999999999 89999999999999999999999999999999999999999999999999


Q ss_pred             EeeecccCCcceeeeccCCCC
Q 026573          211 VVSHRKVRRARLYYLRDKLPR  231 (236)
Q Consensus       211 Vlrr~KVRRAKLYYLRdk~~r  231 (236)
                      |++++|||||||||||++.++
T Consensus        85 V~r~gkvRRAKLyYLR~~~GK  105 (114)
T 3r8s_P           85 VKRRGAVRKAKLYYLRERTGK  105 (114)
T ss_dssp             EEECEECCSSCCGGGTTCCHH
T ss_pred             EEEccccchhheeeecCCcch
Confidence            999999999999999998754

>2zjr_M 50S ribosomal protein L19; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: b.34.5.6 PDB: 1nwx_N* 1nwy_N* 1sm1_N* 1xbp_N* 2zjp_M* 2zjq_M 1nkw_N 3cf5_M* 3dll_M* 3pio_M* 3pip_M* 1pnu_N 1pny_N 1vor_Q 1vou_Q 1vow_Q 1voy_Q 1vp0_Q

Probab=100.00  E-value=3.5e-43  Score=297.18  Aligned_cols=112  Identities=36%  Similarity=0.602  Sum_probs=94.3

Q ss_pred             hhHHHHHHHHHHHhhhcCCCCCCCCCCCEEEEEEEeec-CccccceEEEEEEEEecCCccceEEEEeeeCCeeEEEEeec
Q 026573          123 GDIMGILNKRAVEASESERPIPDIRTGDVVEIKLEVPE-NRRRLSIYKGIVMSRQNAGIHTTIRIRRIIAGIGVEIVFPL  201 (236)
Q Consensus       123 ~dlM~iLe~~~ie~~~~kk~iP~f~~GDiV~V~~~i~E-~K~RiQ~F~GVVIa~r~~Gl~sTFtLRnii~GvGVEr~FpL  201 (236)
                      +++|+.|+.+++.+. .++++|+|++||||+|++++.| +|+|+|.|+|+||+++|+|+++||||||+++|+|||++|||
T Consensus         5 M~li~~le~eqlk~l-~~~diP~Fr~GDtV~V~vkI~EG~KeRiQ~FeGVVIarr~~Gl~sTFTVRkis~GvGVER~Fpl   83 (166)
T 2zjr_M            5 IKINRGELLRGIEQD-HTRQLPDFRPGDTVRVDTKVREGNRTRSQAFEGVVIAINGSGSRKSFTVRKISFGEGVERVFPF   83 (166)
T ss_dssp             CCCCHHHHHHHTTGG-GCCCCCCCSSSEEEEEECCTTSSSCCCCEEEECCEEECCCCGGGCEEEEEEEETTEEEEEEEET
T ss_pred             HHHHHHHHHHHHhhc-cccCCCCcCCCCEEEEEEEEecCCeeeecceEEEEEEEeCCCCCcEEEEEEecCCeeEEEEEec
Confidence            455655555544322 2489999999999999999999 89999999999999999999999999999999999999999


Q ss_pred             cCCccceEEEeeecccCCcceeeeccCCCCCCCC
Q 026573          202 YSPNIKEIKVVSHRKVRRARLYYLRDKLPRLSTF  235 (236)
Q Consensus       202 ySP~I~~IeVlrr~KVRRAKLYYLRdk~~r~STf  235 (236)
                      |||+|++|+|+++||||||||||||++.++...+
T Consensus        84 hSP~I~kIEVvrrGKVRRAKLYYLRd~~GKaARI  117 (166)
T 2zjr_M           84 ASPLVNQVTIVERGKVRRAKLYYLRELRGKAARI  117 (166)
T ss_dssp             TCTTEEEEEEEECCCCSSSCCGGGCC--------
T ss_pred             CCCccceEEEEeccccchhheeeccCCCCchhhe
Confidence            9999999999999999999999999998876544

>3v2d_T 50S ribosomal protein L19; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_S 2hgj_S 2hgu_S 2j03_T 2jl6_T 2jl8_T 2v47_T 2v49_T 2wdi_T 2wdj_T 2wdl_T 2wdn_T 2wh2_T 2wh4_T 2wrj_T 2wrl_T 2wro_T 2wrr_T 2x9s_T 2x9u_T ...

Probab=100.00  E-value=6.2e-42  Score=284.71  Aligned_cols=100  Identities=38%  Similarity=0.722  Sum_probs=96.5

Q ss_pred             HHHHhhhcCCCCCCCCCCCEEEEEEEeec-CccccceEEEEEEEEecCCccceEEEEeeeCCeeEEEEeeccCCccceEE
Q 026573          132 RAVEASESERPIPDIRTGDVVEIKLEVPE-NRRRLSIYKGIVMSRQNAGIHTTIRIRRIIAGIGVEIVFPLYSPNIKEIK  210 (236)
Q Consensus       132 ~~ie~~~~kk~iP~f~~GDiV~V~~~i~E-~K~RiQ~F~GVVIa~r~~Gl~sTFtLRnii~GvGVEr~FpLySP~I~~Ie  210 (236)
                      +.+|+.++++++|+|++||||+|++.+.| +|+|+|.|+|+||+++|+|+++||||||+++|+|||++||||||+|++|+
T Consensus         8 ~~ie~~~~~~diP~F~~GDtV~V~~~i~EG~keRiQ~FeGvVI~rr~~Gl~~tFtVRkis~gvGVEr~Fpl~SP~I~~Ie   87 (146)
T 3v2d_T            8 KLVESRYVRTDLPEFRPGDTVRVSYKVKEGNRTRIQDFEGIVIRIRRNGFNTTFTVRKVSYGVGVERIFPLHSPLIQKID   87 (146)
T ss_dssp             HHHHHTTCCCCCCCCCTTCEEEEEEEEECSSCEEEEEEEEEEEEEECCGGGCEEEEEEEETTEEEEEEEETTCTTEEEEE
T ss_pred             HHHHHHHhhccCCCcCCCCEEEEEEEEccCCceeeeeEEEEEEEEECCCCCeEEEEEEecCCccEEEEEecCCCccceEE
Confidence            67888899999999999999999999999 89999999999999999999999999999999999999999999999999


Q ss_pred             EeeecccCCcceeeeccCCCC
Q 026573          211 VVSHRKVRRARLYYLRDKLPR  231 (236)
Q Consensus       211 Vlrr~KVRRAKLYYLRdk~~r  231 (236)
                      |+++|||||||||||||+.++
T Consensus        88 VvrrgkVRRAKLYYLR~~~GK  108 (146)
T 3v2d_T           88 IVQRGRARRAKLYFIRNLSDR  108 (146)
T ss_dssp             EEECEECSSSCCGGGGGCCHH
T ss_pred             EEecCccchhheeeccCCcch
Confidence            999999999999999998653

>2vc8_A Enhancer of mRNA-decapping protein 3; P-BODY component, cytoplasm, SM-like protein, protein-binding; 1.31A {Homo sapiens}

Probab=80.86  E-value=7.6  Score=29.66  Aligned_cols=59  Identities=29%  Similarity=0.489  Sum_probs=41.5

Q ss_pred             CCCCEEEEEEEeecCccccceEEEEEEEEecCCccceEEEEeeeCCeeE-----EEEeeccCCccceEEEeeec
Q 026573          147 RTGDVVEIKLEVPENRRRLSIYKGIVMSRQNAGIHTTIRIRRIIAGIGV-----EIVFPLYSPNIKEIKVVSHR  215 (236)
Q Consensus       147 ~~GDiV~V~~~i~E~K~RiQ~F~GVVIa~r~~Gl~sTFtLRnii~GvGV-----Er~FpLySP~I~~IeVlrr~  215 (236)
                      ..|++|.++-     +.-+-.|+|++..+..  .+.|+||+|++ .-|+     |.+|  -.--|++++|++..
T Consensus         7 ~iGs~VSi~c-----~d~lGvYQG~i~~vd~--~~~tItL~~~f-~NG~~~~s~eVtl--s~~DI~~L~ii~~~   70 (84)
T 2vc8_A            7 WLGSIVSINC-----GDSLGVYQGRVSAVDQ--VSQTISLTRPF-HNGVKCLVPEVTF--RAGDITELKILEIP   70 (84)
T ss_dssp             TTTCEEEEEC-----CTTTCEEEEEEEEEET--TTTEEEEEEEE-ETTEECSSSEEEE--EGGGCSEEEEEECC
T ss_pred             ccCCEEEEEE-----CCCceEEEEEEEEecc--CCCeEEEehhh-hCCCCCCCcEEEE--EecChhheEEEecC
Confidence            4688888874     4446689999999875  45789999996 4454     3222  22358899998754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	236
d2gycn1	114	b.34.5.6 (N:1-114) Ribosomal protein L19 {Escheric	2e-29
d2zjrm1	108	b.34.5.6 (M:2-109) Ribosomal protein L19 {Deinococ	7e-28
d2j01t1	138	b.34.5.6 (T:1-138) Ribosomal protein L19 {Thermus	2e-23

>d2gycn1 b.34.5.6 (N:1-114) Ribosomal protein L19 {Escherichia coli [TaxId: 562]} Length = 114

class: All beta proteins
fold: SH3-like barrel
superfamily: Translation proteins SH3-like domain
family: Ribosomal protein L19
domain: Ribosomal protein L19
species: Escherichia coli [TaxId: 562]

 Score =  104 bits (260), Expect = 2e-29
 Identities = 37/101 (36%), Positives = 65/101 (64%), Gaps = 1/101 (0%)

Query: 132 RAVEASESERPIPDIRTGDVVEIKLEVPE-NRRRLSIYKGIVMSRQNAGIHTTIRIRRII 190
           + +E  + ++ +P  R GD VE+K+ V E +++RL  ++G+V++ +N G+H+   +R+I 
Sbjct: 5   KQLEQEQMKQDVPSFRPGDTVEVKVWVVEGSKKRLQAFEGVVIAIRNRGLHSAFTVRKIS 64

Query: 191 AGIGVEIVFPLYSPNIKEIKVVSHRKVRRARLYYLRDKLPR 231
            G GVE VF  +SP +  I V     VR+A+LYYLR++  +
Sbjct: 65  NGEGVERVFQTHSPVVDSISVKRRGAVRKAKLYYLRERTGK 105

>d2zjrm1 b.34.5.6 (M:2-109) Ribosomal protein L19 {Deinococcus radiodurans [TaxId: 1299]} Length = 108

class: All beta proteins
fold: SH3-like barrel
superfamily: Translation proteins SH3-like domain
family: Ribosomal protein L19
domain: Ribosomal protein L19
species: Deinococcus radiodurans [TaxId: 1299]

 Score =  100 bits (250), Expect = 7e-28
 Identities = 39/97 (40%), Positives = 59/97 (60%), Gaps = 2/97 (2%)

Query: 132 RAVEASESERPIPDIRTGDVVEIKLEVPE-NRRRLSIYKGIVMSRQNAGIHTTIRIRRII 190
           R +E  +  R +PD R GD V +  +V E NR R   ++G+V++   +G   +  +R+I 
Sbjct: 13  RGIEQ-DHTRQLPDFRPGDTVRVDTKVREGNRTRSQAFEGVVIAINGSGSRKSFTVRKIS 71

Query: 191 AGIGVEIVFPLYSPNIKEIKVVSHRKVRRARLYYLRD 227
            G GVE VFP  SP + ++ +V   KVRRA+LYYLR+
Sbjct: 72  FGEGVERVFPFASPLVNQVTIVERGKVRRAKLYYLRE 108

>d2j01t1 b.34.5.6 (T:1-138) Ribosomal protein L19 {Thermus thermophilus [TaxId: 274]} Length = 138

class: All beta proteins
fold: SH3-like barrel
superfamily: Translation proteins SH3-like domain
family: Ribosomal protein L19
domain: Ribosomal protein L19
species: Thermus thermophilus [TaxId: 274]

 Score = 90.0 bits (223), Expect = 2e-23
 Identities = 37/98 (37%), Positives = 63/98 (64%), Gaps = 1/98 (1%)

Query: 132 RAVEASESERPIPDIRTGDVVEIKLEVPE-NRRRLSIYKGIVMSRQNAGIHTTIRIRRII 190
           + VE+      +P+ R GD V +  +V E NR R+  ++GIV+  +  G +TT  +R++ 
Sbjct: 8   KLVESRYVRTDLPEFRPGDTVRVSYKVKEGNRTRIQDFEGIVIRIRRNGFNTTFTVRKVS 67

Query: 191 AGIGVEIVFPLYSPNIKEIKVVSHRKVRRARLYYLRDK 228
            G+GVE +FPL+SP I++I +V   + RRA+LY++R+ 
Sbjct: 68  YGVGVERIFPLHSPLIQKIDIVQRGRARRAKLYFIRNL 105

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	236
d2zjrm1	108	Ribosomal protein L19 {Deinococcus radiodurans [Ta	100.0
d2j01t1	138	Ribosomal protein L19 {Thermus thermophilus [TaxId	100.0
d2gycn1	114	Ribosomal protein L19 {Escherichia coli [TaxId: 56	100.0
d1zq1a1	74	Glutamyl-tRNA(Gln) amidotransferase subunit D, Gat	87.53

>d2zjrm1 b.34.5.6 (M:2-109) Ribosomal protein L19 {Deinococcus radiodurans [TaxId: 1299]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Translation proteins SH3-like domain
family: Ribosomal protein L19
domain: Ribosomal protein L19
species: Deinococcus radiodurans [TaxId: 1299]

Probab=100.00  E-value=1.9e-42  Score=273.74  Aligned_cols=101  Identities=39%  Similarity=0.727  Sum_probs=93.5

Q ss_pred             hHHHHHHHHHHHhhhcCCCCCCCCCCCEEEEEEEeec-CccccceEEEEEEEEecCCccceEEEEeeeCCeeEEEEeecc
Q 026573          124 DIMGILNKRAVEASESERPIPDIRTGDVVEIKLEVPE-NRRRLSIYKGIVMSRQNAGIHTTIRIRRIIAGIGVEIVFPLY  202 (236)
Q Consensus       124 dlM~iLe~~~ie~~~~kk~iP~f~~GDiV~V~~~i~E-~K~RiQ~F~GVVIa~r~~Gl~sTFtLRnii~GvGVEr~FpLy  202 (236)
                      +.|++|  +.+|+.+.+ ++|+|++||+|+|++++.| +|+|+|.|+|+||+++|+|+++||||||+++|+|||++||||
T Consensus         7 ~~~~li--~~ie~~~~k-~iP~f~~GDtV~V~~~i~Eg~k~RiQ~FeGvvI~~~~~g~~~tftvRki~~g~GVEr~fpl~   83 (108)
T d2zjrm1           7 NRGELL--RGIEQDHTR-QLPDFRPGDTVRVDTKVREGNRTRSQAFEGVVIAINGSGSRKSFTVRKISFGEGVERVFPFA   83 (108)
T ss_dssp             CHHHHH--HHTTGGGCC-CCCCCSSSEEEEEECCTTSSSCCCCEEEECCEEECCCCGGGCEEEEEEEETTEEEEEEEETT
T ss_pred             CHHHHH--HHHHHHhCc-CCCCcCCCCEEEEEEEEcCCCccceEEEEEEEEEEeCCCccceEEEEEEecCccEEEEEEcC
Confidence            334555  466666655 8999999999999999999 899999999999999999999999999999999999999999


Q ss_pred             CCccceEEEeeecccCCcceeeecc
Q 026573          203 SPNIKEIKVVSHRKVRRARLYYLRD  227 (236)
Q Consensus       203 SP~I~~IeVlrr~KVRRAKLYYLRd  227 (236)
                      ||+|++|+|++++||||||||||||
T Consensus        84 SP~i~~IeV~r~~kvRRakLyYLRd  108 (108)
T d2zjrm1          84 SPLVNQVTIVERGKVRRAKLYYLRE  108 (108)
T ss_dssp             CTTEEEEEEEECCCCSSSCCGGGCC
T ss_pred             CCCccEEEEEEecceeeeeeeeecC
Confidence            9999999999999999999999997

>d2j01t1 b.34.5.6 (T:1-138) Ribosomal protein L19 {Thermus thermophilus [TaxId: 274]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Translation proteins SH3-like domain
family: Ribosomal protein L19
domain: Ribosomal protein L19
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=1.3e-41  Score=278.66  Aligned_cols=101  Identities=38%  Similarity=0.705  Sum_probs=97.5

Q ss_pred             HHHHhhhcCCCCCCCCCCCEEEEEEEeec-CccccceEEEEEEEEecCCccceEEEEeeeCCeeEEEEeeccCCccceEE
Q 026573          132 RAVEASESERPIPDIRTGDVVEIKLEVPE-NRRRLSIYKGIVMSRQNAGIHTTIRIRRIIAGIGVEIVFPLYSPNIKEIK  210 (236)
Q Consensus       132 ~~ie~~~~kk~iP~f~~GDiV~V~~~i~E-~K~RiQ~F~GVVIa~r~~Gl~sTFtLRnii~GvGVEr~FpLySP~I~~Ie  210 (236)
                      +.+|+.+++.++|+|++||||+|++.|.| +|+|+|.|+|+||+++|+|+++||||||+++|+|||++||||||+|++|+
T Consensus         8 ~~iE~~~~k~~iP~fr~GDtV~V~~~i~Eg~k~RiQ~f~GvvI~~~~~g~~~tftvRki~~gvGVEr~fpl~SP~I~~Ie   87 (138)
T d2j01t1           8 KLVESRYVRTDLPEFRPGDTVRVSYKVKEGNRTRIQDFEGIVIRIRRNGFNTTFTVRKVSYGVGVERIFPLHSPLIQKID   87 (138)
T ss_dssp             HHHHCCCCCSCSCCCCSSCBBCCCCCCBTTBSCCCCCCBCEEEEEECCSSSCEEEEEEEETTEEEEEEECSSSSCSCCCB
T ss_pred             HHHHHHhhcccCCCcCCCCEEEEEEEEcCCCceEEEEEEEEEEEEeCCCcceEEEEEEEecCccEEEEEeccCCCccceE
Confidence            57888899999999999999999999999 89999999999999999999999999999999999999999999999999


Q ss_pred             EeeecccCCcceeeeccCCCCC
Q 026573          211 VVSHRKVRRARLYYLRDKLPRL  232 (236)
Q Consensus       211 Vlrr~KVRRAKLYYLRdk~~r~  232 (236)
                      |+++||||||||||||++.++-
T Consensus        88 Vvr~gkvRRAKLyYLR~~~gk~  109 (138)
T d2j01t1          88 IVQRGRARRAKLYFIRNLSDRE  109 (138)
T ss_dssp             CCCCBCCSSSSCGGGSSSCSSS
T ss_pred             EeecCceehhheeehhhccchh
Confidence            9999999999999999998763

>d2gycn1 b.34.5.6 (N:1-114) Ribosomal protein L19 {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Translation proteins SH3-like domain
family: Ribosomal protein L19
domain: Ribosomal protein L19
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1.5e-43  Score=282.40  Aligned_cols=104  Identities=36%  Similarity=0.683  Sum_probs=98.5

Q ss_pred             HHHHhhhcCCCCCCCCCCCEEEEEEEeec-CccccceEEEEEEEEecCCccceEEEEeeeCCeeEEEEeeccCCccceEE
Q 026573          132 RAVEASESERPIPDIRTGDVVEIKLEVPE-NRRRLSIYKGIVMSRQNAGIHTTIRIRRIIAGIGVEIVFPLYSPNIKEIK  210 (236)
Q Consensus       132 ~~ie~~~~kk~iP~f~~GDiV~V~~~i~E-~K~RiQ~F~GVVIa~r~~Gl~sTFtLRnii~GvGVEr~FpLySP~I~~Ie  210 (236)
                      +.+|+.|+++++|+|++||||+|++++.| +|+|+|.|+|+||+++|+|+++||||||+++|+|||++||||||+|++|+
T Consensus         5 ~~ie~~q~k~~iP~f~~GDtV~V~~~i~eg~K~RiQ~feGvvIa~k~~G~~~tftvRki~~GvGVEr~fpl~SP~I~~Ie   84 (114)
T d2gycn1           5 KQLEQEQMKQDVPSFRPGDTVEVKVWVVEGSKKRLQAFEGVVIAIRNRGLHSAFTVRKISNGEGVERVFQTHSPVVDSIS   84 (114)
T ss_dssp             TSSSSSTTCCCCCCSCCCTTCCCCCCCCCCSSSSCCCCCCCCCCSCBCCCSSSCCCBCCCCCSSSCCCCCCCSSCTTCCC
T ss_pred             HHHHHHHhhccCCCcCCCCEEEEEEEEccCCcceeeEEEEEEEEEeCCCcceEEEEEEecCCccEEEEEEeCCCCcceeE
Confidence            35677788899999999999999999999 89999999999999999999999999999999999999999999999999


Q ss_pred             EeeecccCCcceeeeccCCCCCCCC
Q 026573          211 VVSHRKVRRARLYYLRDKLPRLSTF  235 (236)
Q Consensus       211 Vlrr~KVRRAKLYYLRdk~~r~STf  235 (236)
                      |++++||||||||||||+.++..-+
T Consensus        85 V~~~~kvRRaKLyYLR~~~gk~ari  109 (114)
T d2gycn1          85 VKRRGAVRKAKLYYLRERTGKAARI  109 (114)
T ss_dssp             CCCCSCCCCSCTTCCCCSSSCCCTT
T ss_pred             EeccCceehhheeeeccCcchHHhh
Confidence            9999999999999999999876544

>d1zq1a1 b.38.3.1 (A:2-75) Glutamyl-tRNA(Gln) amidotransferase subunit D, GatD {Pyrococcus abyssi [TaxId: 29292]}

class: All beta proteins
fold: Sm-like fold
superfamily: GatD N-terminal domain-like
family: GatD N-terminal domain-like
domain: Glutamyl-tRNA(Gln) amidotransferase subunit D, GatD
species: Pyrococcus abyssi [TaxId: 29292]

Probab=87.53  E-value=0.43  Score=33.76  Aligned_cols=63  Identities=29%  Similarity=0.476  Sum_probs=40.3

Q ss_pred             CCCCCCEEEEEEEeecCccccceEEEEEEEEecCCccceEEEEeeeCC--eeEEEEeeccCCccceEEEeeeccc
Q 026573          145 DIRTGDVVEIKLEVPENRRRLSIYKGIVMSRQNAGIHTTIRIRRIIAG--IGVEIVFPLYSPNIKEIKVVSHRKV  217 (236)
Q Consensus       145 ~f~~GDiV~V~~~i~E~K~RiQ~F~GVVIa~r~~Gl~sTFtLRnii~G--vGVEr~FpLySP~I~~IeVlrr~KV  217 (236)
                      .+.+||.|+|......+   -..|+|+++-.-.-+-...++| +.-+|  +|+.      --.|++|+++.++++
T Consensus        10 ~~~~GD~Vri~~~~~~~---~~~~eGilmP~~e~s~~~~ivl-KL~nGYNiGi~------~~~i~~ievlek~kv   74 (74)
T d1zq1a1          10 NINVGDFVRITKEEDGE---EVTYEGYIMPPYELSAGDTLVL-KLENGYNIGIA------LEKIRRIEVLERAKV   74 (74)
T ss_dssp             TCCTTCEEEEEEESSSS---EEECCEEECCCCTTCCCSEEEE-EETTSCEEEEE------GGGEEEEEEEECCCC
T ss_pred             CCCCCCEEEEEEecCCC---ceEEEEEEcCCcccCCCCEEEE-EecCceeeccc------hhHeeEEEEEeeccC
Confidence            47899999997654211   1369999997644333344444 33333  4543      247889999988775