Citrus Sinensis ID: 026582

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230------
Protein Sequence
MVCMCLLFKVPLGSVTPFALVNESARDVALLLDKGFKAQERCFFHPLSNDMSISLNTNDLDKFLKSIGRDPAYVDLEANPAVGKDQPPDLAAFVPSGSTVLPDLPDPASAVQSAGGSHVNANNNCKAATEKAIKPAKDVQNVKDKSAKAVNPSSSFTDAEKFVEEILDRISAKLLSETKEGNIAQQGQELGNEIANRLRKCCYPELKNLATIFKNTAYTQGFHAGKASSLTQCPRT
Secondary Structure (PSIPRED)
cHHHHHHHccccccccHHHHcccccccEEEEEccccccccEEEEEcccccccEEEcHHHHHHHHHHcccccEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHcccccccccEEEEccccccEEEEEEHHHccccEEEEcccccccEEEEcHHHHHHHHHHHccccEEEEccccccccccccccHHEEcccccEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHccccccHHHHHcccccc
Coil and Loop (DISEMBL)
mvcmcllfkvplgsvtpfalvNESARDVALLLDKGFkaqercffhplsndmsislNTNDLDKFLKsigrdpayvdleanpavgkdqppdlaafvpsgstvlpdlpdpasavqsaggshvnannncKAATEkaikpakdvqnvkdksakavnpsssftdAEKFVEEILDRISAKLLSETKEGNIAQQGQELGNEIANRLRKCCYPELKNLATIFKNTaytqgfhagkassltqcprt
Flexible Loop (DISEMBL)
MVCMCLLFKVPLGSVTPFALVNESARDVALLLDKGFKAQERCFFhplsndmsisLNTNDLDKFLKSIGRDPAYVDLEANPAVGKDQPPDLAAFVPSGSTVLPDLPDPASAVQSAGGSHVNANNNCKAATEkaikpakdvqnvkdksakavnpsssftdaeKFVEEILDRISAKLLSETKEGNIAQQGQELGNEIANRLRKCCYPELKNLATIFKNTAYTQGFhagkassltqcprt
Low Complexity Region (SEG)
MVCMCLLFKVPLGSVTPFALVNESARDVALLLDKGFKAQERCFFHPLSNDMSISLNTNDLDKFLKSIGRDPAYVDLEANPAVGKDQPPDLAAFVPSGSTVLPDLPDPASAVQSAGGSHVNANNNCKAATEKAIKPAKDVQNVKDKSAKAVNPSSSFTDAEKFVEEILDRISAKLLSETKEGNIAQQGQELGNEIANRLRKCCYPELKNLATIFKNTAYTQGFHAGKASSLTQCPRT
Disordered region (IsUnstruct)
*VCMCLLFKVPLGSVTPFALVNESARDVALLLDKGFKAQERCFFHPLSNDMSISLNTNDLDKFLKSIGRDPAYVDL*************************************************************************************FVEEILDRISA*****************LGNEIANRLRKCCYPELKNLATIFKNTAYTQGFHA************
Disordered Region (DISOPRED)
MVCMCLLFKVPLGSVTPFALVNESARDVALLLDKGFKAQERCFFHPLSNDMSISLNTNDLDKFLKSIGRDPAYVD************************************************************************************EKFVEEILDRISAKLLSETK******QGQELGNEIANRLRKCCYPELKNLATIFKNTAYTQGFHAGKA*********
Disordered Region (DISEMBL)
MVCMCLLFKVPLGSVTPFALVNESARDVALLLDKGFKAQERCFFHPLSNDMSISLNTNDLDKFLKSIGRDPAYVDLEANPAVGKDQPPDLAAFVPSGSTVLPDLPDP***********VNANNNCKAATEKAIKPAKD******************TDAEKFVEEILDRISAKLLSETKEGNIAQQGQELGNEIANRLRKCCYPELKNLATIFKNTAYTQGFHAG***********
Disordered Region (DISPRO)
*VCMCLLFKVPLGSVTPFALVNESARDVALLLDKGFKAQERCFFHPLSNDMSISLNTNDLDKFLKSIGRDPAYVDLEANPAVGKDQPPDLAAFVPSGSTVLP*****************************************************FTDAEKFVEEILDRISAKLLSETKEGNIAQQGQELGNEIANRLRKCCYPELKNLATIFKNTAYTQGFHA************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooohhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVCMCLLFKVPLGSVTPFALVNESARDVALLLDKGFKAQERCFFHPLSNDMSISLNTNDLDKFLKSIGRDPAYVDLEANPAVGKDQPPDLAAFVPSGSTVLPDLPDPASAVQSAGGSHVNANNNCKAATEKAIKPAKDVQNVKDKSAKAVNPSSSFTDAEKFVEEILDRISAKLLSETKEGNIAQQGQELGNEIANRLRKCCYPELKNLATIFKNTAYTQGFHAGKASSLTQCPRT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	236	2.2.26 [Sep-21-2011]
A1A4Q2	171	Prolyl-tRNA synthetase as	yes	no	0.300	0.415	0.337	6e-05
A6NEY8	169	Putative prolyl-tRNA synt	yes	no	0.292	0.408	0.333	0.0002
Q6NRL0	168	Prolyl-tRNA synthetase as	N/A	no	0.292	0.410	0.333	0.0005
Q9D820	169	Prolyl-tRNA synthetase as	yes	no	0.292	0.408	0.319	0.0008
Q8I5R7	746	Proline--tRNA ligase OS=P	yes	no	0.283	0.089	0.313	0.0008

>sp|A1A4Q2|PRXD1_BOVIN Prolyl-tRNA synthetase associated domain-containing protein 1 OS=Bos taurus GN=PRORSD1 PE=2 SV=1

 Score = 47.8 bits (112), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 25/74 (33%), Positives = 39/74 (52%), Gaps = 3/74 (4%)

Query: 8   FKVPLGSVTPFALVNESARDVALLLDKGF--KAQERCFFHPLSNDMSISLNTNDLDKFLK 65
            KV  G  TP AL  +   DV  +LD  F     E+ +FHP++N  ++ L+  D   F+K
Sbjct: 99  LKVGQGCATPLALFCDDG-DVKFVLDSAFLEGGHEKVYFHPMTNAATMGLSPEDFLTFVK 157

Query: 66  SIGRDPAYVDLEAN 79
           + G DP  ++ + N
Sbjct: 158 NTGHDPIILNFDKN 171

Bos taurus (taxid: 9913)

>sp|A6NEY8|PRXD1_HUMAN Putative prolyl-tRNA synthetase associated domain-containing protein 1 OS=Homo sapiens GN=PRORSD1P PE=5 SV=3

 Score = 46.2 bits (108), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 3/72 (4%)

Query: 8   FKVPLGSVTPFALVNESARDVALLLDKGF--KAQERCFFHPLSNDMSISLNTNDLDKFLK 65
            KV  G  TP AL  +   DV  +LD  F     E+ +FHP++N  ++ L+  D   F+K
Sbjct: 99  LKVGQGCATPLALFCDGG-DVKFVLDSAFLEGGHEKVYFHPMTNAATMGLSPEDFLTFVK 157

Query: 66  SIGRDPAYVDLE 77
             G DP  ++ +
Sbjct: 158 MTGHDPIILNFD 169

Homo sapiens (taxid: 9606)

>sp|Q6NRL0|PRXD1_XENLA Prolyl-tRNA synthetase associated domain-containing protein 1 OS=Xenopus laevis GN=prorsd1p PE=2 SV=1

 Score = 45.1 bits (105), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 35/72 (48%), Gaps = 3/72 (4%)

Query: 8   FKVPLGSVTPFALVNESARDVALLLDKGF--KAQERCFFHPLSNDMSISLNTNDLDKFLK 65
            KV  G  TP AL  +   DV  +LD  F     ER +FHP++N  ++ +   +   FLK
Sbjct: 98  LKVGQGCATPLALFCDRG-DVQFVLDAQFLEGGYERVYFHPMTNAATLGMTPQEFVTFLK 156

Query: 66  SIGRDPAYVDLE 77
             G DP  +  +
Sbjct: 157 KTGHDPIIIHFD 168

Xenopus laevis (taxid: 8355)

>sp|Q9D820|PRXD1_MOUSE Prolyl-tRNA synthetase associated domain-containing protein 1 OS=Mus musculus GN=Prorsd1 PE=2 SV=1

 Score = 44.3 bits (103), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 23/72 (31%), Positives = 38/72 (52%), Gaps = 3/72 (4%)

Query: 8   FKVPLGSVTPFALVNESARDVALLLDKGF--KAQERCFFHPLSNDMSISLNTNDLDKFLK 65
            KV  G  TP +L  +   DV  +LD  F     E+ +FHP++N  ++ L+  D   F+K
Sbjct: 99  LKVGQGCATPLSLFCDDG-DVKFVLDSAFLEGGHEKVYFHPMTNAATMGLSPEDFLIFVK 157

Query: 66  SIGRDPAYVDLE 77
           + G DP  ++ +
Sbjct: 158 ATGHDPIILNFD 169

Mus musculus (taxid: 10090)

>sp|Q8I5R7|SYP_PLAF7 Proline--tRNA ligase OS=Plasmodium falciparum (isolate 3D7) GN=proRS PE=1 SV=1

 Score = 44.3 bits (103), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 21/67 (31%), Positives = 34/67 (50%)

Query: 13  GSVTPFALVNESARDVALLLDKGFKAQERCFFHPLSNDMSISLNTNDLDKFLKSIGRDPA 72
           G ++P A+ N+    V L  D+  K  +    HPL N  S+ + T D+ KF +S    P 
Sbjct: 113 GCLSPLAIKNDKENIVKLYFDEEIKNMQEVIIHPLHNYSSLYIKTQDVIKFCESFNHAPE 172

Query: 73  YVDLEAN 79
           YV ++ +
Sbjct: 173 YVQIKED 179

Catalyzes the attachment of proline to tRNA(Pro) in a two-step reaction: proline is first activated by ATP to form Pro-AMP and then transferred to the acceptor end of tRNA(Pro) (By similarity). Functions in trans to edit the amino acid moiety from incorrectly charged Ala-tRNA(Pro). Has no activity on correctly charged Pro-tRNA(Pro) or Ala-tRNA(Ala).

Plasmodium falciparum (isolate 3D7) (taxid: 36329)

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 5

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	236
356515866	322	PREDICTED: uncharacterized protein LOC10	0.927	0.680	0.618	5e-71
356552652	320	PREDICTED: prolyl-tRNA synthetase associ	0.923	0.681	0.589	2e-67
217075807	329	unknown [Medicago truncatula]	0.940	0.674	0.581	3e-66
357461571	378	hypothetical protein MTR_3g072620 [Medic	0.940	0.587	0.581	4e-66
388495642	329	unknown [Medicago truncatula]	0.940	0.674	0.577	9e-66
7271117	236	25.7 kDa protein [Cicer arietinum]	0.940	0.940	0.582	5e-65
255545452	321	conserved hypothetical protein [Ricinus	0.944	0.694	0.569	8e-65
449524730	323	PREDICTED: proline--tRNA ligase-like [Cu	0.923	0.674	0.55	3e-64
449449737	323	PREDICTED: prolyl-tRNA synthetase associ	0.923	0.674	0.55	3e-64
359492751	320	PREDICTED: prolyl-tRNA synthetase associ	0.919	0.678	0.573	2e-63

>gi|356515866|ref|XP_003526618.1| PREDICTED: uncharacterized protein LOC100817904 [Glycine max]

 Score =  273 bits (697), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 136/220 (61%), Positives = 164/220 (74%), Gaps = 1/220 (0%)

Query: 7   LFKVPLGSVTPFALVNESARDVALLLDKGFKAQERCFFHPLSNDMSISLNTNDLDKFLKS 66
           + +VPLG VTPFALVNESARDV+LLLD+GFK+Q+ CFFHPLSNDMSISLN  DLDKFLKS
Sbjct: 95  VLQVPLGCVTPFALVNESARDVSLLLDQGFKSQKHCFFHPLSNDMSISLNACDLDKFLKS 154

Query: 67  IGRDPAYVDLEANPAVGKDQPPDLAAFVPSGSTVLPDLPDPASAVQS-AGGSHVNANNNC 125
           IGR+P+YVDLE NP VGKDQPPDLAA VPSGS VLPD P   S+ Q     +HV+ +N  
Sbjct: 155 IGRNPSYVDLETNPTVGKDQPPDLAALVPSGSIVLPDQPQKQSSSQVPKDANHVSVDNGA 214

Query: 126 KAATEKAIKPAKDVQNVKDKSAKAVNPSSSFTDAEKFVEEILDRISAKLLSETKEGNIAQ 185
              + K +KP+   +N K   AK VN S SF DA +FVEEIL + S  LLSE K+ NI  
Sbjct: 215 NTVSAKVVKPSSGGKNTKGTPAKNVNSSGSFADAGQFVEEILQKTSQLLLSEVKDENIKL 274

Query: 186 QGQELGNEIANRLRKCCYPELKNLATIFKNTAYTQGFHAG 225
            G++LG  ++++L+K    E K+LA IFKNTAYT+GFHAG
Sbjct: 275 HGEQLGTVLSDKLQKNLNAEFKSLAMIFKNTAYTEGFHAG 314

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356552652|ref|XP_003544677.1| PREDICTED: prolyl-tRNA synthetase associated domain-containing protein 1-like [Glycine max]

 Score =  261 bits (667), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 129/219 (58%), Positives = 159/219 (72%), Gaps = 1/219 (0%)

Query: 7   LFKVPLGSVTPFALVNESARDVALLLDKGFKAQERCFFHPLSNDMSISLNTNDLDKFLKS 66
           + +V LG VTPFA+VNESARDV+LLLD+GFK QE CFFHPLSNDM+IS+N+NDLDKFLKS
Sbjct: 95  ILQVSLGCVTPFAVVNESARDVSLLLDQGFKTQEFCFFHPLSNDMTISINSNDLDKFLKS 154

Query: 67  IGRDPAYVDLEANPAVGKDQPPDLAAFVPSGSTVLPDLPDPASAVQSAGGSHVNANNNCK 126
           IGRDP+YVD EANP VGKDQPPDLAA VPSG+  LPD P+   + Q   G+HV+  +  K
Sbjct: 155 IGRDPSYVDFEANPPVGKDQPPDLAALVPSGTINLPDQPEKQPSSQPTEGNHVSV-DEPK 213

Query: 127 AATEKAIKPAKDVQNVKDKSAKAVNPSSSFTDAEKFVEEILDRISAKLLSETKEGNIAQQ 186
             + K +K     +N K+K+    + S +F D E FVEEIL + S  LLSE KE  I Q 
Sbjct: 214 IISAKVVKSCVSGKNTKEKAVNKAHSSGNFADVELFVEEILHKTSRLLLSEIKEDTITQH 273

Query: 187 GQELGNEIANRLRKCCYPELKNLATIFKNTAYTQGFHAG 225
           G+ LG  +++ LRK    +L+NL  IFKNTAYT+GFHAG
Sbjct: 274 GENLGTVVSDNLRKGLSSDLENLTMIFKNTAYTEGFHAG 312

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217075807|gb|ACJ86263.1| unknown [Medicago truncatula]

 Score =  257 bits (657), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 132/227 (58%), Positives = 155/227 (68%), Gaps = 5/227 (2%)

Query: 7   LFKVPLGSVTPFALVNESARDVALLLDKGFKAQERCFFHPLSNDMSISLNTNDLDKFLKS 66
           L +VPLG VTPFA+VNESARDV+LLLD+GFK QE CFFHPLSNDMSISLN   LDKFLKS
Sbjct: 93  LLQVPLGCVTPFAVVNESARDVSLLLDQGFKTQEHCFFHPLSNDMSISLNVRGLDKFLKS 152

Query: 67  IGRDPAYVDLEANPAVGKDQPPDLAAFVPSGSTVLPDLPDPASAVQSAGGSH-----VNA 121
           IGRDP+YVDLEANPAVGKDQPPDLAA VPS S +LPD P   S+ +     +     V+ 
Sbjct: 153 IGRDPSYVDLEANPAVGKDQPPDLAALVPSSSIILPDQPGKQSSTEVPKNENLVSVAVSV 212

Query: 122 NNNCKAATEKAIKPAKDVQNVKDKSAKAVNPSSSFTDAEKFVEEILDRISAKLLSETKEG 181
           +   K    K +KP+    N K    K V PS SF DA K VEEIL + S  LLSE  E 
Sbjct: 213 DTKTKTVPAKVVKPSVAGNNSKGTPEKTVQPSGSFADAGKLVEEILHKTSKILLSEINEE 272

Query: 182 NIAQQGQELGNEIANRLRKCCYPELKNLATIFKNTAYTQGFHAGKAS 228
            I   G++LG  ++++L+K    +LKNLA  FKNTAYT+GF  G  S
Sbjct: 273 TIKMHGEQLGTALSDKLQKNLTSDLKNLAMTFKNTAYTEGFQDGLQS 319

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357461571|ref|XP_003601067.1| hypothetical protein MTR_3g072620 [Medicago truncatula] gi|355490115|gb|AES71318.1| hypothetical protein MTR_3g072620 [Medicago truncatula]

 Score =  256 bits (655), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 132/227 (58%), Positives = 155/227 (68%), Gaps = 5/227 (2%)

Query: 7   LFKVPLGSVTPFALVNESARDVALLLDKGFKAQERCFFHPLSNDMSISLNTNDLDKFLKS 66
           L +VPLG VTPFA+VNESARDV+LLLD+GFK QE CFFHPLSNDMSISLN   LDKFLKS
Sbjct: 142 LLQVPLGCVTPFAVVNESARDVSLLLDQGFKTQEHCFFHPLSNDMSISLNVRGLDKFLKS 201

Query: 67  IGRDPAYVDLEANPAVGKDQPPDLAAFVPSGSTVLPDLPDPASAVQSAGGSH-----VNA 121
           IGRDP+YVDLEANPAVGKDQPPDLAA VPS S +LPD P   S+ +     +     V+ 
Sbjct: 202 IGRDPSYVDLEANPAVGKDQPPDLAALVPSSSIILPDQPGKQSSTEVPKNENLVSVAVSV 261

Query: 122 NNNCKAATEKAIKPAKDVQNVKDKSAKAVNPSSSFTDAEKFVEEILDRISAKLLSETKEG 181
           +   K    K +KP+    N K    K V PS SF DA K VEEIL + S  LLSE  E 
Sbjct: 262 DTKTKTVPAKVVKPSVAGNNSKGTPEKTVQPSGSFADAGKLVEEILHKTSKILLSEINEE 321

Query: 182 NIAQQGQELGNEIANRLRKCCYPELKNLATIFKNTAYTQGFHAGKAS 228
            I   G++LG  ++++L+K    +LKNLA  FKNTAYT+GF  G  S
Sbjct: 322 TIKMHGEQLGTALSDKLQKNLTSDLKNLAMTFKNTAYTEGFQDGLQS 368

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388495642|gb|AFK35887.1| unknown [Medicago truncatula]

 Score =  255 bits (652), Expect = 9e-66,   Method: Compositional matrix adjust.
 Identities = 131/227 (57%), Positives = 154/227 (67%), Gaps = 5/227 (2%)

Query: 7   LFKVPLGSVTPFALVNESARDVALLLDKGFKAQERCFFHPLSNDMSISLNTNDLDKFLKS 66
           L +VPLG VTPFA+VNESARDV+LLLD+GFK QE CFFHPLSNDMSISLN   LDKFLKS
Sbjct: 93  LLQVPLGCVTPFAVVNESARDVSLLLDQGFKTQEHCFFHPLSNDMSISLNVRGLDKFLKS 152

Query: 67  IGRDPAYVDLEANPAVGKDQPPDLAAFVPSGSTVLPDLPDPASAVQSAGGSH-----VNA 121
           IGRDP+YVDLEANPAVGKDQPPDLAA VPS S +LPD P   S+ +     +     V+ 
Sbjct: 153 IGRDPSYVDLEANPAVGKDQPPDLAALVPSSSIILPDQPGKQSSTEVPKNENLVSVAVSV 212

Query: 122 NNNCKAATEKAIKPAKDVQNVKDKSAKAVNPSSSFTDAEKFVEEILDRISAKLLSETKEG 181
           +   K    K +KP+    N K    K V PS SF DA K VEEIL + S  L SE  E 
Sbjct: 213 DTKTKTVPAKVVKPSVAGNNSKGTPEKTVQPSGSFADAGKLVEEILHKTSKILFSEINEE 272

Query: 182 NIAQQGQELGNEIANRLRKCCYPELKNLATIFKNTAYTQGFHAGKAS 228
            I   G++LG  ++++L+K    +LKNLA  FKNTAYT+GF  G  S
Sbjct: 273 TIKMHGEQLGTALSDKLQKNLTSDLKNLAMTFKNTAYTEGFQDGLQS 319

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|7271117|emb|CAB81546.1| 25.7 kDa protein [Cicer arietinum]

 Score =  253 bits (646), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 131/225 (58%), Positives = 156/225 (69%), Gaps = 3/225 (1%)

Query: 3   CMCLLFKVPLGSVTPFALVNESARDVALLLDKGFKAQERCFFHPLSNDMSISLNTNDLDK 62
            +  + +V LG VTPFA+VNESARDV+LLLD+GFK QE CFFHPLSNDMSISLN  DLD 
Sbjct: 6   ALAEILQVSLGCVTPFAVVNESARDVSLLLDQGFKTQEHCFFHPLSNDMSISLNVRDLDT 65

Query: 63  FLKSIGRDPAYVDLEANPAVGKDQPPDLAAFVPSGSTVLPDLPDPASA--VQSAGGSHVN 120
           FLKSIGRDP+YVDLEANPAVGKDQPPDLAA VPSGS VLPD P   S+  V    G+ V+
Sbjct: 66  FLKSIGRDPSYVDLEANPAVGKDQPPDLAALVPSGSIVLPDQPGKQSSAEVPPRDGNIVS 125

Query: 121 ANNNCKAATEKAIKPAKDVQNVKDKSAKAVNPSSSFTDAEKFVEEILDRISAKLLSETKE 180
            +N  K    K +KP     N K    K V  S S+ D  + VEEIL + S  LLSE  E
Sbjct: 126 VDNKSKTVPAKVVKPLVG-NNSKGTLDKNVQSSRSYADVGQLVEEILHKTSKLLLSEINE 184

Query: 181 GNIAQQGQELGNEIANRLRKCCYPELKNLATIFKNTAYTQGFHAG 225
             I   G++LG  ++++L+K    + KNLA +FKNTAYT+GFHAG
Sbjct: 185 ETIKIHGEQLGTTVSDKLQKHLSSDFKNLAMMFKNTAYTEGFHAG 229

Source: Cicer arietinum

Species: Cicer arietinum

Genus: Cicer

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255545452|ref|XP_002513786.1| conserved hypothetical protein [Ricinus communis] gi|223546872|gb|EEF48369.1| conserved hypothetical protein [Ricinus communis]

 Score =  252 bits (644), Expect = 8e-65,   Method: Compositional matrix adjust.
 Identities = 127/223 (56%), Positives = 162/223 (72%)

Query: 3   CMCLLFKVPLGSVTPFALVNESARDVALLLDKGFKAQERCFFHPLSNDMSISLNTNDLDK 62
            +  + +VPLG VTPFA++NESAR V+LLLDKGF AQE CFFHPLSN+MSISL+  DLDK
Sbjct: 91  ALAEILQVPLGCVTPFAVMNESARHVSLLLDKGFIAQEYCFFHPLSNNMSISLHARDLDK 150

Query: 63  FLKSIGRDPAYVDLEANPAVGKDQPPDLAAFVPSGSTVLPDLPDPASAVQSAGGSHVNAN 122
           FLKSIGR+P+YVDLEANP VGKDQPPDLA FVPS ST+L D P   + +Q    + ++A+
Sbjct: 151 FLKSIGREPSYVDLEANPPVGKDQPPDLAIFVPSDSTILSDPPQKEAPLQGHNKNPISAD 210

Query: 123 NNCKAATEKAIKPAKDVQNVKDKSAKAVNPSSSFTDAEKFVEEILDRISAKLLSETKEGN 182
               AA  K  K    V+NV+ +SA   +  S F+DA+  VEEIL++ SA LLSE KE +
Sbjct: 211 KKSIAAAVKTTKLPSTVKNVQGESAVPAHQRSVFSDADLLVEEILNKTSALLLSEIKEDS 270

Query: 183 IAQQGQELGNEIANRLRKCCYPELKNLATIFKNTAYTQGFHAG 225
           I + G+ LG  +A+ +RK    +LK+LA +FKNTAY QGF+AG
Sbjct: 271 IKEHGEHLGTVVADSIRKRLSSDLKSLAIMFKNTAYAQGFYAG 313

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449524730|ref|XP_004169374.1| PREDICTED: proline--tRNA ligase-like [Cucumis sativus]

 Score =  250 bits (639), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 121/220 (55%), Positives = 160/220 (72%), Gaps = 2/220 (0%)

Query: 8   FKVPLGSVTPFALVNESARDVALLLDKGFKAQERCFFHPLSNDMSISLNTNDLDKFLKSI 67
            KV LG VTPFAL+N++ARDVALLLD+GFK QE CFFHPLSN+ SIS+NT++LDKFL+SI
Sbjct: 99  LKVSLGCVTPFALINKTARDVALLLDQGFKGQEFCFFHPLSNETSISINTSNLDKFLQSI 158

Query: 68  GRDPAYVDLEANPAVGKDQPPDLAAFVPSGSTVLPDLPDPASAVQSAGGSHVNANNNCKA 127
           GRDP+YVDLEANP+VGKDQPPDLA  VPS S+++PD P+  S+   +  +H   +   KA
Sbjct: 159 GRDPSYVDLEANPSVGKDQPPDLAGLVPSVSSLVPDTPEKVSSRPDSNENHGVTDKKSKA 218

Query: 128 ATEKAIKPAKDVQNVKDKSAKAVNPSSSFTDAEKFVEEILDRISAKLLSETKEGNIAQQG 187
                +KP+  V+  KDK    V P  ++ + EKFVEEILD+ SA +LS+  E  + + G
Sbjct: 219 VAANTVKPSTTVKVGKDKPTPKVQP--TYANVEKFVEEILDKTSAIVLSQLTEETVNKHG 276

Query: 188 QELGNEIANRLRKCCYPELKNLATIFKNTAYTQGFHAGKA 227
           + LG  ++N +++    EL NL+ IFKNTAYT+GFHAG +
Sbjct: 277 EHLGAAVSNSIKRHLSSELNNLSMIFKNTAYTEGFHAGSS 316

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449449737|ref|XP_004142621.1| PREDICTED: prolyl-tRNA synthetase associated domain-containing protein 1-like [Cucumis sativus]

 Score =  250 bits (639), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 121/220 (55%), Positives = 160/220 (72%), Gaps = 2/220 (0%)

Query: 8   FKVPLGSVTPFALVNESARDVALLLDKGFKAQERCFFHPLSNDMSISLNTNDLDKFLKSI 67
            KV LG VTPFAL+N++ARDVALLLD+GFK QE CFFHPLSN+ SIS+NT++LDKFL+SI
Sbjct: 99  LKVSLGCVTPFALINKTARDVALLLDQGFKGQEFCFFHPLSNETSISINTSNLDKFLQSI 158

Query: 68  GRDPAYVDLEANPAVGKDQPPDLAAFVPSGSTVLPDLPDPASAVQSAGGSHVNANNNCKA 127
           GRDP+YVDLEANP+VGKDQPPDLA  VPS S+++PD P+  S+   +  +H   +   KA
Sbjct: 159 GRDPSYVDLEANPSVGKDQPPDLAGLVPSVSSLVPDTPEKVSSHPDSNENHGVTDKKSKA 218

Query: 128 ATEKAIKPAKDVQNVKDKSAKAVNPSSSFTDAEKFVEEILDRISAKLLSETKEGNIAQQG 187
                +KP+  V+  KDK    V P  ++ + EKFVEEILD+ SA +LS+  E  + + G
Sbjct: 219 VAANTVKPSTTVKVGKDKPTPKVQP--TYANVEKFVEEILDKTSAIVLSQLTEETVNKHG 276

Query: 188 QELGNEIANRLRKCCYPELKNLATIFKNTAYTQGFHAGKA 227
           + LG  ++N +++    EL NL+ IFKNTAYT+GFHAG +
Sbjct: 277 EHLGAAVSNSIKRHLSSELNNLSMIFKNTAYTEGFHAGSS 316

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359492751|ref|XP_002284446.2| PREDICTED: prolyl-tRNA synthetase associated domain-containing protein 1-like [Vitis vinifera] gi|302141840|emb|CBI19043.3| unnamed protein product [Vitis vinifera]

 Score =  248 bits (632), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 125/218 (57%), Positives = 155/218 (71%), Gaps = 1/218 (0%)

Query: 7   LFKVPLGSVTPFALVNESARDVALLLDKGFKAQERCFFHPLSNDMSISLNTNDLDKFLKS 66
           + +V LG VTPFALVNESAR V+L LD+GFK ++ CFFHPLSNDMSI++   DLDKFLKS
Sbjct: 95  ILQVSLGCVTPFALVNESARHVSLFLDQGFKTKDFCFFHPLSNDMSIAIKACDLDKFLKS 154

Query: 67  IGRDPAYVDLEANPAVGKDQPPDLAAFVPSGSTVLPDLPDPASAVQSAGGSHVNANNNCK 126
           IG+DP+YVDLEANP VGKDQPPDLA  VPS + VL D P+  S        H + +N   
Sbjct: 155 IGKDPSYVDLEANPTVGKDQPPDLAGLVPSDAIVLQDPPE-KSVSSGPTEKHASVDNKSS 213

Query: 127 AATEKAIKPAKDVQNVKDKSAKAVNPSSSFTDAEKFVEEILDRISAKLLSETKEGNIAQQ 186
            A  K +KP+ +VQ VK+K   +V+  SSFTD   FVEEILD+ SA +LSE  E  I Q 
Sbjct: 214 VAAAKTVKPSNNVQKVKEKPPISVHQLSSFTDPGHFVEEILDKTSAIVLSEITEDAIKQH 273

Query: 187 GQELGNEIANRLRKCCYPELKNLATIFKNTAYTQGFHA 224
           G+ LG  +++ +RK    +LKNLA I+KNTAYT+GFHA
Sbjct: 274 GEHLGAVLSDSIRKRLSLDLKNLAIIYKNTAYTEGFHA 311

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	236
TAIR|locus:2826697	308	AT1G44835 "AT1G44835" [Arabido	0.872	0.668	0.538	2.4e-51
UNIPROTKB|F1NDD4	189	LOC421212 "Uncharacterized pro	0.288	0.359	0.394	3.1e-06
UNIPROTKB|F1SQK5	171	LOC100514282 "Uncharacterized	0.296	0.409	0.342	2.4e-05
UNIPROTKB|A1A4Q2	171	PRORSD1 "Prolyl-tRNA synthetas	0.296	0.409	0.342	3.3e-05
UNIPROTKB|F6Y5M8	171	LOC100856725 "Uncharacterized	0.296	0.409	0.342	6.5e-05
UNIPROTKB|E2R3A2	172	E2R3A2 "Uncharacterized protei	0.296	0.406	0.342	6.8e-05
RGD|1308179	169	Prorsd1 "prolyl-tRNA synthetas	0.288	0.402	0.338	0.00021
UNIPROTKB|A6NEY8	169	PRORSD1P "Putative prolyl-tRNA	0.288	0.402	0.338	0.0003
UNIPROTKB|Q5LNG3	187	SPO3242 "YbaK/prolyl-tRNA synt	0.266	0.336	0.317	0.00051
TIGR_CMR|SPO_3242	187	SPO_3242 "YbaK/prolyl-tRNA syn	0.266	0.336	0.317	0.00051

TAIR|locus:2826697 AT1G44835 "AT1G44835" [Arabidopsis thaliana (taxid:3702)]

 Score = 533 (192.7 bits), Expect = 2.4e-51, P = 2.4e-51
 Identities = 118/219 (53%), Positives = 150/219 (68%)

Query:     7 LFKVPLGSVTPFALVNESARDVALLLDKGFKAQERCFFHPLSNDMSISLNTNDLDKFLKS 66
             L +V LG VTPFA+VNESARDV+LLLD+ FK Q RC FHPLSND+S+SLNT  LDKFLKS
Sbjct:    95 LLQVSLGCVTPFAVVNESARDVSLLLDQKFKNQTRCIFHPLSNDVSVSLNTLGLDKFLKS 154

Query:    67 IGRDPAYVDLEANPAVGKDQPPDLAAFVPSGSTVLPDLPDPASAVQSAGGSHVNANNNCK 126
             IGRDP YVDLEANP VGKDQ PDLA  VPS S ++P++P+  S+ Q      V+A     
Sbjct:   155 IGRDPVYVDLEANPVVGKDQAPDLAVCVPSNSVIVPEIPNQTSSTQIPLPKSVSAEVK-P 213

Query:   127 AATEKAIKPAKDVQNVKDKSAKAVNPSSSFTDAEKFVEEILDRISAKLLSETKEGNIAQQ 186
              A+ K  KPA  V++V + SA    PS+ + + EKFV+EILD+ SA LLSE  +G   + 
Sbjct:   214 VASAKTSKPACKVKSVAENSA----PSA-YKNPEKFVQEILDKTSALLLSEVAKGECVEA 268

Query:   187 GQELGNEIANRLRKCCYPELKNLATIFKNTAYTQGFHAG 225
                    +A  LRK    EL +L+ ++KN+AY +GF+AG
Sbjct:   269 -------LAETLRKRLTSELTHLSIMYKNSAYAEGFYAG 300

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005829 "cytosol" evidence=IDA

UNIPROTKB|F1NDD4 LOC421212 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 123 (48.4 bits), Expect = 3.1e-06, P = 3.1e-06
 Identities = 28/71 (39%), Positives = 40/71 (56%)

Query:     9 KVPLGSVTPFALVNESARDVALLLDKGFK--AQERCFFHPLSNDMSISLNTNDLDKFLKS 66
             +V  G  TP AL  +   DV L+LD GF     E+ +FHP++N  ++ L+  D  KF+KS
Sbjct:   116 QVGQGCATPLALFCDHG-DVRLVLDAGFLEGGHEKVYFHPMTNGATMGLSPEDFLKFVKS 174

Query:    67 IGRDPAYVDLE 77
              G DP  V  +
Sbjct:   175 TGHDPIVVHFD 185

GO:0002161 "aminoacyl-tRNA editing activity" evidence=IEA

UNIPROTKB|F1SQK5 LOC100514282 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 114 (45.2 bits), Expect = 2.4e-05, P = 2.4e-05
 Identities = 25/73 (34%), Positives = 39/73 (53%)

Query:     9 KVPLGSVTPFALVNESARDVALLLDKGFK--AQERCFFHPLSNDMSISLNTNDLDKFLKS 66
             KV  G  TP AL  +   DV  +LD  F     E+ +FHP++N  ++ L+  D   F+K+
Sbjct:   100 KVVQGCATPLALFCDDG-DVKFVLDSAFLEGGHEKVYFHPMTNTATMGLSPEDFLTFVKN 158

Query:    67 IGRDPAYVDLEAN 79
              G DP  ++ + N
Sbjct:   159 TGHDPIILNFDKN 171

GO:0002161 "aminoacyl-tRNA editing activity" evidence=IEA

UNIPROTKB|A1A4Q2 PRORSD1 "Prolyl-tRNA synthetase associated domain-containing protein 1" [Bos taurus (taxid:9913)]

 Score = 113 (44.8 bits), Expect = 3.3e-05, P = 3.3e-05
 Identities = 25/73 (34%), Positives = 39/73 (53%)

Query:     9 KVPLGSVTPFALVNESARDVALLLDKGFK--AQERCFFHPLSNDMSISLNTNDLDKFLKS 66
             KV  G  TP AL  +   DV  +LD  F     E+ +FHP++N  ++ L+  D   F+K+
Sbjct:   100 KVGQGCATPLALFCDDG-DVKFVLDSAFLEGGHEKVYFHPMTNAATMGLSPEDFLTFVKN 158

Query:    67 IGRDPAYVDLEAN 79
              G DP  ++ + N
Sbjct:   159 TGHDPIILNFDKN 171

GO:0002161 "aminoacyl-tRNA editing activity" evidence=IEA

UNIPROTKB|F6Y5M8 LOC100856725 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 111 (44.1 bits), Expect = 6.5e-05, P = 6.5e-05
 Identities = 25/73 (34%), Positives = 37/73 (50%)

Query:     9 KVPLGSVTPFALVNESARDVALLLDKGFK--AQERCFFHPLSNDMSISLNTNDLDKFLKS 66
             KV  G  TP AL  +   DV  +LD  F     E+ +FHP++N  ++ L+  D   F+K 
Sbjct:   100 KVGQGCATPLALFCDDG-DVKFVLDSAFLEGGHEKVYFHPMTNSATMGLSPEDFLTFVKK 158

Query:    67 IGRDPAYVDLEAN 79
              G DP  +  + N
Sbjct:   159 TGHDPIILRFDEN 171

GO:0002161 "aminoacyl-tRNA editing activity" evidence=IEA

UNIPROTKB|E2R3A2 E2R3A2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 111 (44.1 bits), Expect = 6.8e-05, P = 6.8e-05
 Identities = 25/73 (34%), Positives = 37/73 (50%)

Query:     9 KVPLGSVTPFALVNESARDVALLLDKGFK--AQERCFFHPLSNDMSISLNTNDLDKFLKS 66
             KV  G  TP AL  +   DV  +LD  F     E+ +FHP++N  ++ L+  D   F+K 
Sbjct:   100 KVGQGCATPLALFCDDG-DVKFVLDSAFLEGGHEKVYFHPMTNSATMGLSPEDFLTFVKK 158

Query:    67 IGRDPAYVDLEAN 79
              G DP  +  + N
Sbjct:   159 TGHDPIILRFDEN 171

GO:0002161 "aminoacyl-tRNA editing activity" evidence=IEA

RGD|1308179 Prorsd1 "prolyl-tRNA synthetase associated domain containing 1" [Rattus norvegicus (taxid:10116)]

 Score = 107 (42.7 bits), Expect = 0.00021, P = 0.00021
 Identities = 24/71 (33%), Positives = 38/71 (53%)

Query:     9 KVPLGSVTPFALVNESARDVALLLDKGFK--AQERCFFHPLSNDMSISLNTNDLDKFLKS 66
             KV  G  TP AL  +   DV  +LD  F     E+ +FHP++N  ++ L+  D   F+K+
Sbjct:   100 KVGQGCATPLALFCDDG-DVKFVLDSAFLEGGHEKVYFHPMTNAATMGLSPEDFLVFVKA 158

Query:    67 IGRDPAYVDLE 77
              G DP  ++ +
Sbjct:   159 TGHDPIILNFD 169

GO:0002161 "aminoacyl-tRNA editing activity" evidence=IEA

UNIPROTKB|A6NEY8 PRORSD1P "Putative prolyl-tRNA synthetase associated domain-containing protein 1" [Homo sapiens (taxid:9606)]

 Score = 106 (42.4 bits), Expect = 0.00030, P = 0.00030
 Identities = 24/71 (33%), Positives = 37/71 (52%)

Query:     9 KVPLGSVTPFALVNESARDVALLLDKGFK--AQERCFFHPLSNDMSISLNTNDLDKFLKS 66
             KV  G  TP AL  +   DV  +LD  F     E+ +FHP++N  ++ L+  D   F+K 
Sbjct:   100 KVGQGCATPLALFCDGG-DVKFVLDSAFLEGGHEKVYFHPMTNAATMGLSPEDFLTFVKM 158

Query:    67 IGRDPAYVDLE 77
              G DP  ++ +
Sbjct:   159 TGHDPIILNFD 169

GO:0002161 "aminoacyl-tRNA editing activity" evidence=IEA

UNIPROTKB|Q5LNG3 SPO3242 "YbaK/prolyl-tRNA synthetase domain protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 106 (42.4 bits), Expect = 0.00051, P = 0.00051
 Identities = 20/63 (31%), Positives = 38/63 (60%)

Query:    13 GSVTPFALVNESARDVALLLDKGFKAQERCFFHPLSNDMSISLNTNDLDKFLKSIGRDPA 72
             G+V+P A++    ++V L++D   +  E  + HPL ND ++++   DL  FL+ IG +  
Sbjct:   120 GAVSPLAMITGVGQEVRLIMDAAAREAEVIYMHPLVNDRTVAMARADLLAFLERIGCEVT 179

Query:    73 YVD 75
             ++D
Sbjct:   180 WLD 182

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|SPO_3242 SPO_3242 "YbaK/prolyl-tRNA synthetase domain protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 106 (42.4 bits), Expect = 0.00051, P = 0.00051
 Identities = 20/63 (31%), Positives = 38/63 (60%)

Query:    13 GSVTPFALVNESARDVALLLDKGFKAQERCFFHPLSNDMSISLNTNDLDKFLKSIGRDPA 72
             G+V+P A++    ++V L++D   +  E  + HPL ND ++++   DL  FL+ IG +  
Sbjct:   120 GAVSPLAMITGVGQEVRLIMDAAAREAEVIYMHPLVNDRTVAMARADLLAFLERIGCEVT 179

Query:    73 YVD 75
             ++D
Sbjct:   180 WLD 182

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00015360001	SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence; (320 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00020582001	SubName- Full=Chromosome chr14 scaffold_21, whole genome shotgun sequence; (133 aa)	•		•						0.426

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	236
cd04335	156	cd04335, PrdX_deacylase, This CD includes bacteria	2e-23
COG3760	164	COG3760, COG3760, Uncharacterized conserved protei	2e-13
pfam04073	122	pfam04073, YbaK, YbaK / prolyl-tRNA synthetases as	3e-06
cd04332	136	cd04332, YbaK_like, YbaK-like	2e-04

>gnl|CDD|239827 cd04335, PrdX_deacylase, This CD includes bacterial (Agrobacterium tumefaciens and Caulobacter crescentus ProX, and Clostridium sticklandii PrdX) and eukaryotic (Plasmodium falciparum N-terminal ProRS editing domain) sequences

 Score = 91.8 bits (229), Expect = 2e-23
 Identities = 31/66 (46%), Positives = 44/66 (66%)

Query: 9   KVPLGSVTPFALVNESARDVALLLDKGFKAQERCFFHPLSNDMSISLNTNDLDKFLKSIG 68
            V  GSVTPFAL+N+   DV ++LDK    +ER  FHPL+N  ++ ++T DL KFL++ G
Sbjct: 91  GVTPGSVTPFALINDKENDVQVVLDKDLLEEERVGFHPLTNTATVGISTEDLLKFLEATG 150

Query: 69  RDPAYV 74
            +P  V
Sbjct: 151 HEPTVV 156

The C. sticklandii PrdX protein, a homolog of the YbaK and ProX proteins, and the prolyl-tRNA synthetase-editing domain (ProRS-INS), specifically hydrolyzes Ala-tRNA(Pro). In this CD, many of the eukaryotic editing domains are N-terminal and cis-acting, expressed from a multidomain ProRS, however, similar to the bacterial PrdX, the mammalian, amphibian, and echinoderm PrdX-like proteins are trans-acting, single-domain proteins. Length = 156

>gnl|CDD|226283 COG3760, COG3760, Uncharacterized conserved protein [Function unknown]

 Score = 65.9 bits (161), Expect = 2e-13
 Identities = 26/69 (37%), Positives = 42/69 (60%)

Query: 10  VPLGSVTPFALVNESARDVALLLDKGFKAQERCFFHPLSNDMSISLNTNDLDKFLKSIGR 69
           V  GSVT F L+N++   V ++LD+     +   FHPLSN  + S+ + DL +FL++ G 
Sbjct: 96  VIPGSVTVFGLINDTENRVKIVLDQALMDDDLINFHPLSNTATTSIASADLIRFLEATGH 155

Query: 70  DPAYVDLEA 78
           +P  +D+ A
Sbjct: 156 EPRILDVSA 164

Length = 164

>gnl|CDD|217873 pfam04073, YbaK, YbaK / prolyl-tRNA synthetases associated domain

 Score = 44.9 bits (107), Expect = 3e-06
 Identities = 16/57 (28%), Positives = 24/57 (42%), Gaps = 4/57 (7%)

Query: 7   LFKVPLGSVTPFALVNESARDVALLLDKGFKAQERCFFHPLSNDMSISLNTNDLDKF 63
           L  V  G+V+PF L    A  V +L+D+              N  ++ L+  DL K 
Sbjct: 70  LTGVEPGAVSPFGL----ANGVPVLIDESLLDYPDVVVGAGENGATLELSNADLRKL 122

This domain of unknown function is found in numerous prokaryote organisms. The structure of YbaK shows a novel fold. This domain also occurs in a number of prolyl-tRNA synthetases (proRS) from prokaryotes. Thus, the domain is thought to be involved in oligo-nucleotide binding, with possible roles in recognition/discrimination or editing of prolyl-tRNA. Length = 122

>gnl|CDD|239824 cd04332, YbaK_like, YbaK-like

 Score = 39.8 bits (94), Expect = 2e-04
 Identities = 13/59 (22%), Positives = 22/59 (37%), Gaps = 4/59 (6%)

Query: 7   LFKVPLGSVTPFALVNESARDVALLLDKGFKAQERCFFHPLSNDMSISLNTNDLDKFLK 65
           L     G V PF L     + V +++D+     E  +         + L+  DL + L 
Sbjct: 77  LTGCEPGGVGPFGL----KKGVPVVVDESLLELEDVYVGAGERGADLHLSPADLLRLLG 131

The YbaK family of deacylase domains includes the INS amino acid-editing domain of the bacterial class II prolyl tRNA synthetase (ProRS), and it's trans-acting homologs, YbaK, ProX, and PrdX. The primary function of INS is to hydrolyze mischarged cysteinyl-tRNA(Pro)'s, thus helping ensure the fidelity of translation. Organisms whose ProRS lacks the INS domain express an INS homolog in trans (e.g. YbaK, ProX, or PrdX). Length = 136

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	236
COG3760	164	Uncharacterized conserved protein [Function unknow	99.86
cd04335	156	PrdX_deacylase This CD includes bacterial (Agrobac	99.47
PF04073	123	tRNA_edit: Aminoacyl-tRNA editing domain; InterPro	98.94
TIGR00011	152	YbaK_EbsC ybaK/ebsC protein. This model represents	98.89
cd00002	152	YbaK_deacylase This CD includes cysteinyl-tRNA(Pro	98.83
PRK10670	159	hypothetical protein; Provisional	98.8
cd04332	136	YbaK_like YbaK-like. The YbaK family of deacylase	98.79
cd04336	153	YeaK YeaK is an uncharacterized Echerichia coli pr	98.76
cd04333	148	ProX_deacylase This CD, composed mainly of bacteri	98.63
cd04939	139	PA2301 PA2301 is an uncharacterized Pseudomonas ae	97.91
cd04334	160	ProRS-INS INS is an amino acid-editing domain inse	97.3
COG2606	155	EbsC Uncharacterized conserved protein [Function u	97.2
PRK09194	565	prolyl-tRNA synthetase; Provisional	92.4

>COG3760 Uncharacterized conserved protein [Function unknown]

Probab=99.86  E-value=2.5e-22  Score=169.75  Aligned_cols=77  Identities=34%  Similarity=0.563  Sum_probs=75.6

Q ss_pred             hHhhhhhCCCCCceeccccccCCCCCeEEEEccCccCCCeeeeecCCCcceeEecHHHHHHHHHhcCCCcEEEEccC
Q 026582            2 VCMCLLFKVPLGSVTPFALVNESARDVALLLDKGFKAQERCFFHPLSNDMSISLNTNDLDKFLKSIGRDPAYVDLEA   78 (236)
Q Consensus         2 e~LeE~LGV~pGsVSPFaLlND~e~kVkLVIDq~L~~~e~I~fHP~~NTaTI~IS~~DL~KFL~slGhep~~VDfsa   78 (236)
                      |+|+|+|||.|||||+||++||.+++|++|+|++|++.+.++|||++||+|.+|..+||.+||+++||+|.++|+++
T Consensus        88 E~l~E~LGv~pG~VT~Fglindt~~rv~ivlD~~l~~~~~infHPl~N~aTt~ia~~dl~~fL~atGhep~il~~~~  164 (164)
T COG3760          88 ERLMEYLGVIPGSVTVFGLINDTENRVKIVLDQALMDDDLINFHPLSNTATTSIASADLIRFLEATGHEPRILDVSA  164 (164)
T ss_pred             HHHHHHhCCCcCceeEeeeecCccceEEEEEhHhhhhccccccccCCCccceeehHHHHHHHHHHcCCCceeeeccC
Confidence            78999999999999999999999999999999999999999999999999999999999999999999999999975

>cd04335 PrdX_deacylase This CD includes bacterial (Agrobacterium tumefaciens and Caulobacter crescentus ProX, and Clostridium sticklandii PrdX) and eukaryotic (Plasmodium falciparum N-terminal ProRS editing domain) sequences

Probab=99.47  E-value=1.1e-13  Score=113.14  Aligned_cols=73  Identities=42%  Similarity=0.681  Sum_probs=70.3

Q ss_pred             hHhhhhhCCCCCceeccccccCCCCCeEEEEccCccCCCeeeeecCCCcceeEecHHHHHHHHHhcCCCcEEE
Q 026582            2 VCMCLLFKVPLGSVTPFALVNESARDVALLLDKGFKAQERCFFHPLSNDMSISLNTNDLDKFLKSIGRDPAYV   74 (236)
Q Consensus         2 e~LeE~LGV~pGsVSPFaLlND~e~kVkLVIDq~L~~~e~I~fHP~~NTaTI~IS~~DL~KFL~slGhep~~V   74 (236)
                      |++++.+|+.+|+|+|||+.+|.++.+++|+|+++...+.+.|||++|+.|+.|+++||.+|+..+||++.+|
T Consensus        84 ee~~~~~g~~~G~v~P~gl~~~~~~~v~i~iD~~l~~~~~v~~~~G~~~~~~~i~~~dl~~~~~~~~~~~~~~  156 (156)
T cd04335          84 ERLEEKLGVTPGSVTPFALINDKENDVQVVLDKDLLEEERVGFHPLTNTATVGISTEDLLKFLEATGHEPTVV  156 (156)
T ss_pred             HHHHHHHCCCCceeCcceeccCCCCceEEEEChHHhcCCeEEEeCCCCceEEEEcHHHHHHHHHHcCCCceEC
Confidence            6788999999999999999999999999999999999999999999999999999999999999999999875

The C. sticklandii PrdX protein, a homolog of the YbaK and ProX proteins, and the prolyl-tRNA synthetase-editing domain (ProRS-INS), specifically hydrolyzes Ala-tRNA(Pro). In this CD, many of the eukaryotic editing domains are N-terminal and cis-acting, expressed from a multidomain ProRS, however, similar to the bacterial PrdX, the mammalian, amphibian, and echinoderm PrdX-like proteins are trans-acting, single-domain proteins.

>PF04073 tRNA_edit: Aminoacyl-tRNA editing domain; InterPro: IPR007214 This domain of unknown function is found in numerous prokaryote organisms

Probab=98.94  E-value=2.3e-09  Score=84.00  Aligned_cols=59  Identities=20%  Similarity=0.363  Sum_probs=54.2

Q ss_pred             hHhhhhhCCCCCceeccccccCCCCCeEEEEccCccCCCeeeeecCCCcceeEecHHHHHHH
Q 026582            2 VCMCLLFKVPLGSVTPFALVNESARDVALLLDKGFKAQERCFFHPLSNDMSISLNTNDLDKF   63 (236)
Q Consensus         2 e~LeE~LGV~pGsVSPFaLlND~e~kVkLVIDq~L~~~e~I~fHP~~NTaTI~IS~~DL~KF   63 (236)
                      |++++++|+.+|.|+||++.   ...+.+|+|+++.+.+.+.||++.++.++.|+.+||.+|
T Consensus        65 e~~~~~~g~~~G~v~P~g~~---~~~~~vvvD~~l~~~~~v~~~~g~~~~~l~~~~~dl~~l  123 (123)
T PF04073_consen   65 EELEELTGYEPGGVSPFGLP---PKGVPVVVDESLLELDNVYFGAGEPGSHLEISNEDLRKL  123 (123)
T ss_dssp             HHHHHHHSSTTTS--SSGGG---STTEEEEEEGGGGGSSEEEEECSSTTEEEEEEHHHHHHH
T ss_pred             HHhhhccCCCcceecccccc---cCccEEEEEHHHcCCCcEEEeCCCCCeEEEEChHHhccC
Confidence            68899999999999999996   569999999999999999999999999999999999987

The structure of YbaK shows a novel fold. This domain also occurs in a number of prolyl-tRNA synthetases (proRS) from prokaryotes. Thus, the domain is thought to be involved in oligonucleotide binding, with possible roles in recognition/discrimination or editing of prolyl-tRNA [].; PDB: 3MEM_A 2J3L_A 2J3M_A 1WDV_B 2Z0X_A 2Z0K_A 2CX5_C 1DBX_B 1DBU_A 1VJF_A ....

>TIGR00011 YbaK_EbsC ybaK/ebsC protein

Probab=98.89  E-value=3.6e-09  Score=86.14  Aligned_cols=60  Identities=17%  Similarity=0.218  Sum_probs=55.8

Q ss_pred             hHhhhhhCCCCCceeccccccCCCCCeEEEEccCccCCCeeeeecCCCcceeEecHHHHHHHHH
Q 026582            2 VCMCLLFKVPLGSVTPFALVNESARDVALLLDKGFKAQERCFFHPLSNDMSISLNTNDLDKFLK   65 (236)
Q Consensus         2 e~LeE~LGV~pGsVSPFaLlND~e~kVkLVIDq~L~~~e~I~fHP~~NTaTI~IS~~DL~KFL~   65 (236)
                      +++++++|+.+|+|+|||+.    ..+++|+|+++.+.+.+.|||+.++.++.|+++||.+|++
T Consensus        86 ee~~~~~g~~~G~v~P~g~~----~~~~vivD~~l~~~~~~~~~~g~~~~~~~i~~~dl~~~~~  145 (152)
T TIGR00011        86 KDAEKVTGYIRGGISPIGQK----KKFPTYIDESAKQLETIYVSGGKRGLQIELAPDDLIRLLD  145 (152)
T ss_pred             HHHHHhcCCcccccCCCCcC----CCccEEEehHHhcCCEEEEecCCCCcEEEECHHHHHHHhC
Confidence            57888999999999999974    4789999999999999999999999999999999999986

This model represents the YbaK family, bacterial proteins whose full length sequence is homologous to an insertion domain in proline--tRNA ligases. The domain deacylates mischarged tRNAs. The YbaK protein of Haemophilus influenzae (HI1434), although still considered undefined in its role in vivo, likewise deacylates Ala-tRNA(Pro), but not the correctly charged Pro-tRNA(Pro). A crystallographic study of HI1434 suggests a nucleotide binding function. Previously, a member of this family was described as EbsC and was thought to be involved in cell wall metabolism.

>cd00002 YbaK_deacylase This CD includes cysteinyl-tRNA(Pro) deacylases from Haemophilus influenzae and Escherichia coli and other related bacterial proteins

Probab=98.83  E-value=4.3e-09  Score=85.87  Aligned_cols=60  Identities=15%  Similarity=0.201  Sum_probs=56.3

Q ss_pred             hHhhhhhCCCCCceeccccccCCCCCeEEEEccCccCCCeeeeecCCCcceeEecHHHHHHHHH
Q 026582            2 VCMCLLFKVPLGSVTPFALVNESARDVALLLDKGFKAQERCFFHPLSNDMSISLNTNDLDKFLK   65 (236)
Q Consensus         2 e~LeE~LGV~pGsVSPFaLlND~e~kVkLVIDq~L~~~e~I~fHP~~NTaTI~IS~~DL~KFL~   65 (236)
                      |++++++|+.+|+|+||++.    ..|++|+|+++.+.+.+.+|++.|+.++.|+.+||.+|++
T Consensus        87 ee~~~~~g~~~G~v~P~~l~----~~v~~liD~~l~~~~~~~~~ag~~~~~l~i~~~~l~~~~~  146 (152)
T cd00002          87 KDAERLTGYIRGGISPLGQK----KRLPTVIDESALDLDTIYVSAGKRGLQIELAPQDLAKLTG  146 (152)
T ss_pred             HHHHHhcCCcccccCccCcC----CCccEEEehHHhcCCEEEEeCCCCCcEEEECHHHHHHHhC
Confidence            67889999999999999996    4789999999999999999999999999999999999986

These trans-acting, single-domain proteins are homologs of ProX and also the cis-acting prolyl-tRNA synthetase (ProRS) inserted (INS) editing domain. The bacterial amino acid trans-editing enzyme YbaK is a deacylase that hydrolyzes cysteinyl-tRNA(Pro)'s mischarged by prolyl-tRNA synthetase. YbaK also hydrolyzes glycyl-tRNA's, alanyl-tRNA's, seryl-tRNA's, and prolyl-tRNA's. YbaK is homologous to the INS domain of prolyl-tRNA synthetase (ProRS) as well as the trans-editing enzyme ProX of Aeropyrum pernix which hydrolyzes alanyl-tRNA's and glycyl-tRNA's.

>PRK10670 hypothetical protein; Provisional

Probab=98.80  E-value=9.5e-09  Score=85.86  Aligned_cols=67  Identities=15%  Similarity=0.280  Sum_probs=60.6

Q ss_pred             hHhhhhhCCCCCceeccccccCCCCCeEEEEccCccCCCeeeeecCCCcceeEecHHHHHHHHHhcCCCcEEEEcc
Q 026582            2 VCMCLLFKVPLGSVTPFALVNESARDVALLLDKGFKAQERCFFHPLSNDMSISLNTNDLDKFLKSIGRDPAYVDLE   77 (236)
Q Consensus         2 e~LeE~LGV~pGsVSPFaLlND~e~kVkLVIDq~L~~~e~I~fHP~~NTaTI~IS~~DL~KFL~slGhep~~VDfs   77 (236)
                      |++++++|+.+|+|+|||+-    ..+++|+|+.+...+.+.++++.++.++.|+++||.+++.     .+++||.
T Consensus        90 eev~~~tG~~~G~v~P~Gl~----~~v~v~vD~~l~~~~~i~~~aG~~~~~~~i~~~dl~~l~~-----~~~~di~  156 (159)
T PRK10670         90 MVAQRSTGYLVGGISPLGQK----KRLPTVIDAPAQEFATIYVSGGKRGLDIELAAGDLAKLLD-----AKFADIA  156 (159)
T ss_pred             HHHHHhhCCccceECccCCC----CCCeEEEehHHhcCCEEEEcCCCCCcEEEECHHHHHHHhC-----CEEEEEE
Confidence            67899999999999999983    4799999999999999999999999999999999999976     3577775

>cd04332 YbaK_like YbaK-like

Probab=98.79  E-value=7.7e-09  Score=80.79  Aligned_cols=60  Identities=22%  Similarity=0.314  Sum_probs=56.5

Q ss_pred             hHhhhhhCCCCCceeccccccCCCCCeEEEEccCccCCCeeeeecCCCcceeEecHHHHHHHHH
Q 026582            2 VCMCLLFKVPLGSVTPFALVNESARDVALLLDKGFKAQERCFFHPLSNDMSISLNTNDLDKFLK   65 (236)
Q Consensus         2 e~LeE~LGV~pGsVSPFaLlND~e~kVkLVIDq~L~~~e~I~fHP~~NTaTI~IS~~DL~KFL~   65 (236)
                      |++.+++|+.+|+|+||++.    .+|++|+|+++.+.+.+.+|++.|+.++.|+.+||.+++.
T Consensus        72 ~~~~~~~g~~~G~v~P~~~~----~~v~~~iD~~l~~~~~~~~~~g~~~~~~~i~~~~l~~~~~  131 (136)
T cd04332          72 EELEELTGCEPGGVGPFGLK----KGVPVVVDESLLELEDVYVGAGERGADLHLSPADLLRLLG  131 (136)
T ss_pred             HHHHHHhCCCcCccCccccC----CCCcEEEehHHhhCCeEEEcCCCcCcEEEECHHHHHHHhc
Confidence            67888999999999999997    5799999999999999999999999999999999999887

The YbaK family of deacylase domains includes the INS amino acid-editing domain of the bacterial class II prolyl tRNA synthetase (ProRS), and it's trans-acting homologs, YbaK, ProX, and PrdX. The primary function of INS is to hydrolyze mischarged cysteinyl-tRNA(Pro)'s, thus helping ensure the fidelity of translation. Organisms whose ProRS lacks the INS domain express an INS homolog in trans (e.g. YbaK, ProX, or PrdX).

>cd04336 YeaK YeaK is an uncharacterized Echerichia coli protein with a YbaK-like domain of unknown function

Probab=98.76  E-value=1.1e-08  Score=82.88  Aligned_cols=60  Identities=22%  Similarity=0.275  Sum_probs=56.0

Q ss_pred             hHhhhhhCCCCCceeccccccCCCCCeEEEEccCccC-CCeeeeecCCCcceeEecHHHHHHHHH
Q 026582            2 VCMCLLFKVPLGSVTPFALVNESARDVALLLDKGFKA-QERCFFHPLSNDMSISLNTNDLDKFLK   65 (236)
Q Consensus         2 e~LeE~LGV~pGsVSPFaLlND~e~kVkLVIDq~L~~-~e~I~fHP~~NTaTI~IS~~DL~KFL~   65 (236)
                      +++++++|+.+|+|+||++.    ..+++|+|.++.+ .+.+++||++|+.++.|+.+||.+|..
T Consensus        86 ~~l~~~~g~~~G~v~P~gl~----~~v~~~iD~~l~~~~~~v~~~~G~~~~~l~i~~~dl~~~~~  146 (153)
T cd04336          86 EEAEELTGCVIGAVPPFSFD----PKLKLIADPSLLDRGDEIAFNAGRLDASVVLDTADYLRIAR  146 (153)
T ss_pred             HHHHHHhCCccccCCCCCCC----CCceEEEChHHhccCCEEEEcCCCCCcEEEECHHHHHHHhC
Confidence            67889999999999999995    3789999999999 799999999999999999999999986

The YbaK-like domain family includes the INS amino acid-editing domain of the bacterial class II prolyl tRNA synthetase (ProRS), and it's trans-acting homologs, YbaK, and ProX. The primary function of INS is to hydrolyze mischarged cysteinyl-tRNA(Pro)'s, thus helping ensure the fidelity of translation. Organisms whose ProRS lacks the INS domain express a single-domain INS homolog such as YbaK, ProX, or PrdX which supplies the function of INS in trans.

>cd04333 ProX_deacylase This CD, composed mainly of bacterial single-domain proteins, includes the Thermus thermophilus (Tt) YbaK-like protein, a homolog of the trans-acting Escherichia coli YbaK Cys-tRNA(Pro) deacylase and the Agrobacterium tumefaciens ProX Ala-tRNA(Pro) deacylase and also the cis-acting prolyl-tRNA synthetase-editing domain (ProRS-INS)

Probab=98.63  E-value=5.3e-08  Score=79.00  Aligned_cols=60  Identities=17%  Similarity=0.309  Sum_probs=56.0

Q ss_pred             hHhhhhhCCCCCceeccccccCCCCCeEEEEccCccCCCeeeeecCCCcceeEecHHHHHHHHH
Q 026582            2 VCMCLLFKVPLGSVTPFALVNESARDVALLLDKGFKAQERCFFHPLSNDMSISLNTNDLDKFLK   65 (236)
Q Consensus         2 e~LeE~LGV~pGsVSPFaLlND~e~kVkLVIDq~L~~~e~I~fHP~~NTaTI~IS~~DL~KFL~   65 (236)
                      +++++++|+.+|+|+||++..    .|++|+|+++...+.+.+|++.++.++.|+++||.+|+.
T Consensus        83 ~~~~~~~g~~~G~v~P~gl~~----~v~v~vD~~l~~~~~i~~~~g~~~~~~~i~~~dl~~~~~  142 (148)
T cd04333          83 EEVRELTGFAIGGVCPFGHPE----PLPVYLDESLKRFDEVWAAAGTPNAAFRLTPDELERLTG  142 (148)
T ss_pred             HHHHHHHCCCCCcCCCCCCCC----CCeEEEehhHhhCCeEEEcCCCCCcEEEECHHHHHHHhC
Confidence            678889999999999999963    699999999999999999999999999999999999986

While ProX and ProRS-INS hydrolyze misacylated Ala-tRNA(Pro), the E. coli YbaK hydrolyzes misacylated Cys-tRNA(Pro). A few CD members are N-terminal, YbaK-ProX-like domains of an uncharacterized protein with a C-terminal, predicted Fe-S protein domain.

>cd04939 PA2301 PA2301 is an uncharacterized Pseudomonas aeruginosa protein with a YbaK-like domain of unknown function

Probab=97.91  E-value=1.5e-05  Score=66.21  Aligned_cols=60  Identities=15%  Similarity=0.165  Sum_probs=56.0

Q ss_pred             hHhhhhhCCCCCceeccccccCCCCCeEEEEccCccCCCeeeeecCCCcceeEecHHHHHHHHH
Q 026582            2 VCMCLLFKVPLGSVTPFALVNESARDVALLLDKGFKAQERCFFHPLSNDMSISLNTNDLDKFLK   65 (236)
Q Consensus         2 e~LeE~LGV~pGsVSPFaLlND~e~kVkLVIDq~L~~~e~I~fHP~~NTaTI~IS~~DL~KFL~   65 (236)
                      +++++..|..+|.|||||+-.    .+.++||++++..+.+.+-.+.-..++.|+++||.++..
T Consensus        76 ~ev~~~TGy~~GGvsP~G~~~----~~pv~iD~sl~~~~~v~~saG~~~~~~~l~p~~L~~~~~  135 (139)
T cd04939          76 ETAVELTGMEYGGITPVGLPA----GWPILVDSAVAERPAVVIGSGVRRSKLLLPGAALAELPG  135 (139)
T ss_pred             HHHHHhhCCCCccCCcCCcCC----CCCEEEehHHhcCCEEEECCCCCCcEEEECHHHHHHHhC
Confidence            678999999999999999954    799999999999999999999999999999999998864

The YbaK-like domain family includes the INS amino acid-editing domain of the bacterial class II prolyl tRNA synthetase (ProRS), and it's trans-acting homologs, YbaK, and ProX. The primary function of INS is to hydrolyze mischarged cysteinyl-tRNA(Pro)'s, thus helping ensure the fidelity of translation. Organisms whose ProRS lacks the INS domain express a single-domain INS homolog such as YbaK, ProX, or PrdX which supplies the function of INS in trans.

>cd04334 ProRS-INS INS is an amino acid-editing domain inserted (INS) into the bacterial class II prolyl-tRNA synthetase (ProRS) however, this CD is not exclusively bacterial

Probab=97.30  E-value=0.00026  Score=58.25  Aligned_cols=44  Identities=14%  Similarity=0.210  Sum_probs=36.8

Q ss_pred             hHhhhhhCCCCCceeccccccCCCCCeEEEEccCccCCCeeeeecCCCc
Q 026582            2 VCMCLLFKVPLGSVTPFALVNESARDVALLLDKGFKAQERCFFHPLSND   50 (236)
Q Consensus         2 e~LeE~LGV~pGsVSPFaLlND~e~kVkLVIDq~L~~~e~I~fHP~~NT   50 (236)
                      |+|++++|+.+|+|+|||+.     .|++++|.++...+.+.+--+.+.
T Consensus        97 eel~~~~g~~~G~v~P~gl~-----~v~~~iD~~l~~~~~~~~ga~~~~  140 (160)
T cd04334          97 EEIEAATGAPPGFIGPVGLK-----KIPIIADRSVADLKNFVCGANEDD  140 (160)
T ss_pred             HHHHHhhCCCCCEECCcCCC-----CCeEEEehHHhcCCCEEEcCCCCC
Confidence            67889999999999999997     799999999999877655444443

It is also found at the N-terminus of the eukaryotic/archaea-like ProRS's of yeasts and single-celled parasites. ProRS catalyzes the attachment of proline to tRNA(Pro); proline is first activated by ATP, and then transferred to the acceptor end of tRNA(Pro). ProRS can inadvertently process noncognate amino acids such as alanine and cysteine, and to avoid such errors, in post-transfer editing, the INS domain deacylates mischarged Ala-tRNA(Pro), thus ensuring the fidelity of translation. Misacylated Cys-tRNA(Pro) is not edited by ProRS. In addition to the INS editing domain, the prokaryote-like ProRS protein contains catalytic and anticodon-binding domains which form a dimeric interface.

>COG2606 EbsC Uncharacterized conserved protein [Function unknown]

Probab=97.20  E-value=0.00065  Score=57.57  Aligned_cols=60  Identities=17%  Similarity=0.246  Sum_probs=56.7

Q ss_pred             hHhhhhhCCCCCceeccccccCCCCCeEEEEccCccCCCeeeeecCCCcceeEecHHHHHHHHH
Q 026582            2 VCMCLLFKVPLGSVTPFALVNESARDVALLLDKGFKAQERCFFHPLSNDMSISLNTNDLDKFLK   65 (236)
Q Consensus         2 e~LeE~LGV~pGsVSPFaLlND~e~kVkLVIDq~L~~~e~I~fHP~~NTaTI~IS~~DL~KFL~   65 (236)
                      +++++.+|..-|.|||||+-.    .+.+|+|+.+++.++|.+--+.-...|.|++.||.+++.
T Consensus        87 ~~v~~~TGy~vGGv~P~G~~~----~~p~~iD~s~~~~~~I~~~aG~rg~~v~lap~dl~~l~~  146 (155)
T COG2606          87 EEVQRLTGYVVGGVSPFGQKK----RLPTYIDESALRFDTIYVSAGKRGLLVELAPQDLAELLG  146 (155)
T ss_pred             HHHHHHhCCcccCcCCCCcCC----CCCEEEehhhhcCCeEEecCCCcCceEEECHHHHHHhhc
Confidence            678999999999999999965    899999999999999999999999999999999999886

>PRK09194 prolyl-tRNA synthetase; Provisional

Probab=92.40  E-value=0.14  Score=50.71  Aligned_cols=43  Identities=14%  Similarity=0.162  Sum_probs=35.6

Q ss_pred             hHhhhhhCCCCCceeccccccCCCCCeEEEEccCccCCCeeeeecCC
Q 026582            2 VCMCLLFKVPLGSVTPFALVNESARDVALLLDKGFKAQERCFFHPLS   48 (236)
Q Consensus         2 e~LeE~LGV~pGsVSPFaLlND~e~kVkLVIDq~L~~~e~I~fHP~~   48 (236)
                      +++.+.+|+.+|+|+|||+.+    +|.+|+|.++...+.+.+.-+.
T Consensus       318 eel~~~~g~~~G~v~P~Gl~~----~v~viiD~sl~~~~~~~~gan~  360 (565)
T PRK09194        318 EEIRAALGAVPGFLGPVGLPK----DVPIIADRSVADMSNFVVGANE  360 (565)
T ss_pred             HHHHHhhCCCCCccCcccCCC----CceEEEeccccccccccccCCC
Confidence            567889999999999999975    7999999999987666554433

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	236
1vjf_A	180	Crystal Structure Of A Putative Dna-Binding Protein		8e-09
1vki_A	181	Crystal Structure Of A Putative Oligo-Nucleotide Bi		4e-07

>pdb|1VJF|A Chain A, Crystal Structure Of A Putative Dna-Binding Protein (Cc_0111) From Caulobacter Crescentus Cb15 At 1.62 A Resolution Length = 180

Iteration: 1
 Score = 57.0 bits (136), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 27/71 (38%), Positives = 41/71 (57%)
Query: 13  GSVTPFALVNESARDVALLLDKGFKAQERCFFHPLSNDMSISLNTNDLDKFLKSIGRDPA 72
           GSVT F L+N++ + V  +LDK     +   FHPL ND + +++   L +FL ++G +P 
Sbjct: 110 GSVTAFGLINDTEKRVRFVLDKALADSDPVNFHPLKNDATTAVSQAGLRRFLAALGVEPX 169
Query: 73  YVDLEANPAVG 83
            VD  A   VG
Sbjct: 170 IVDFAAXEVVG 180

>pdb|1VKI|A Chain A, Crystal Structure Of A Putative Oligo-Nucleotide Binding Protein (Atu3699, Agr_l_2275) From Agrobacterium Tumefaciens Str. C58 At 1.60 A Resolution Length = 181

Iteration: 1
 Score = 51.6 bits (122), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 35/59 (59%)
Query: 13  GSVTPFALVNESARDVALLLDKGFKAQERCFFHPLSNDMSISLNTNDLDKFLKSIGRDP 71
           GSVT F  +N++AR V  +LD      E    HPLSND + ++ + DL +FL++ G  P
Sbjct: 116 GSVTVFGAINDTARQVTFVLDSDLLENELVNGHPLSNDQTTTIASKDLIRFLEATGHAP 174

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	236
1vjf_A	180	DNA-binding protein, putative; structural genomics	3e-21
1vki_A	181	Hypothetical protein ATU3699; structural genomics,	4e-18
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-07

>1vjf_A DNA-binding protein, putative; structural genomics, joint center for S genomics, JCSG, protein structure initiative, PSI; HET: MSE; 1.62A {Caulobacter crescentus CB15} SCOP: d.116.1.1 Length = 180

 Score = 86.6 bits (214), Expect = 3e-21
 Identities = 28/76 (36%), Positives = 42/76 (55%)

Query: 8   FKVPLGSVTPFALVNESARDVALLLDKGFKAQERCFFHPLSNDMSISLNTNDLDKFLKSI 67
             V  GSVT F L+N++ + V  +LDK     +   FHPL ND + +++   L +FL ++
Sbjct: 105 LGVTPGSVTAFGLINDTEKRVRFVLDKALADSDPVNFHPLKNDATTAVSQAGLRRFLAAL 164

Query: 68  GRDPAYVDLEANPAVG 83
           G +P  VD  A   VG
Sbjct: 165 GVEPMIVDFAAMEVVG 180

>1vki_A Hypothetical protein ATU3699; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 1.60A {Agrobacterium tumefaciens str} SCOP: d.116.1.1 Length = 181

 Score = 78.2 bits (192), Expect = 4e-18
 Identities = 25/69 (36%), Positives = 38/69 (55%)

Query: 8   FKVPLGSVTPFALVNESARDVALLLDKGFKAQERCFFHPLSNDMSISLNTNDLDKFLKSI 67
             V  GSVT F  +N++AR V  +LD      E    HPLSND + ++ + DL +FL++ 
Sbjct: 111 LGVVPGSVTVFGAINDTARQVTFVLDSDLLENELVNGHPLSNDQTTTIASKDLIRFLEAT 170

Query: 68  GRDPAYVDL 76
           G  P  + +
Sbjct: 171 GHAPLVLKV 179

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 50.6 bits (120), Expect = 1e-07
 Identities = 32/230 (13%), Positives = 67/230 (29%), Gaps = 66/230 (28%)

Query: 20  LVNESARDVALLLDKGFKA------------------QERCF-----FHPLSNDM-SISL 55
           +  +      +     FK                   Q+  +     +   S+   +I L
Sbjct: 166 VALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKL 225

Query: 56  NTNDLDKFLKSIGRDPAYVDLEANPAVGKDQPPDLAAFVPSGSTVLPDLPDPASAVQSAG 115
             + +   L+ + +   Y                L         VL +       VQ+A 
Sbjct: 226 RIHSIQAELRRLLKSKPY-------------ENCL--------LVLLN-------VQNA- 256

Query: 116 GSHVNA-NNNCKA-ATEKAIKPAKDVQNVKDKSAKAVNPSSSFTDAE--KFVEEILDRIS 171
               NA N +CK   T +  +    +           + S + T  E    + + LD   
Sbjct: 257 -KAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRP 315

Query: 172 AKLLSETKEGN---IAQQGQELGNEIA--NRLRKCCYPELKNLATIFKNT 216
             L  E    N   ++   + + + +A  +  +   +     L TI +++
Sbjct: 316 QDLPREVLTTNPRRLSIIAESIRDGLATWDNWK---HVNCDKLTTIIESS 362

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	236
1vjf_A	180	DNA-binding protein, putative; structural genomics	99.59
1vki_A	181	Hypothetical protein ATU3699; structural genomics,	99.58
3op6_A	152	Uncharacterized protein; structural genomics, join	98.92
2z0x_A	158	Putative uncharacterized protein TTHA1699; protein	98.89
1dbu_A	158	HI1434, cysteinyl-tRNA(Pro) deacylase; structural	98.87
2dxa_A	166	Protein YBAK; trans-editing domain, prolyl-tRNA sy	98.67
1wdv_A	152	Hypothetical protein APE2540; structural genomics,	98.64
3mem_A	457	Putative signal transduction protein; structural g	98.34

>1vjf_A DNA-binding protein, putative; structural genomics, joint center for S genomics, JCSG, protein structure initiative, PSI; HET: MSE; 1.62A {Caulobacter crescentus CB15} SCOP: d.116.1.1

Probab=99.59  E-value=2e-15  Score=125.71  Aligned_cols=79  Identities=34%  Similarity=0.584  Sum_probs=75.9

Q ss_pred             hHhhhhhCCCCCceeccccccCCCCCeEEEEccCccCCCeeeeecCCCcceeEecHHHHHHHHHhcCCCcEEEEccCCC
Q 026582            2 VCMCLLFKVPLGSVTPFALVNESARDVALLLDKGFKAQERCFFHPLSNDMSISLNTNDLDKFLKSIGRDPAYVDLEANP   80 (236)
Q Consensus         2 e~LeE~LGV~pGsVSPFaLlND~e~kVkLVIDq~L~~~e~I~fHP~~NTaTI~IS~~DL~KFL~slGhep~~VDfsa~p   80 (236)
                      |++++.+|+.+|+|+|||+.+|..++|++|+|+++...+.+.|||+.|+.++.|+++||.+|+..++|++.||||++..
T Consensus        99 eel~~~tG~~~G~v~P~Gl~~~~~~~v~vviD~sl~~~~~i~~~ag~~~~~i~l~~~dL~~~~~~~~~~~~~v~~~~~~  177 (180)
T 1vjf_A           99 EMMLETLGVTPGSVTAFGLINDTEKRVRFVLDKALADSDPVNFHPLKNDATTAVSQAGLRRFLAALGVEPMIVDFAAME  177 (180)
T ss_dssp             HHHHHHHCCCTTCCCGGGGGGCTTCCEEEEEEHHHHTCSSEEECSSSTTEEEEECHHHHHHHHHHTTCCCEEEETTTTE
T ss_pred             HHHHHHhCCCCceeCccccCCCCCCccEEEEchHHhcCCcEEEeCCCCCeEEEECHHHHHHHHHhcCCCeEEEECcccc
Confidence            6788999999999999999999999999999999999999999999999999999999999999999999999998844

>1vki_A Hypothetical protein ATU3699; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 1.60A {Agrobacterium tumefaciens str} SCOP: d.116.1.1

Probab=99.58  E-value=4.3e-15  Score=123.86  Aligned_cols=77  Identities=34%  Similarity=0.501  Sum_probs=74.3

Q ss_pred             hHhhhhhCCCCCceeccccccCCCCCeEEEEccCccCCCeeeeecCCCcceeEecHHHHHHHHHhcCCCcEEEEccC
Q 026582            2 VCMCLLFKVPLGSVTPFALVNESARDVALLLDKGFKAQERCFFHPLSNDMSISLNTNDLDKFLKSIGRDPAYVDLEA   78 (236)
Q Consensus         2 e~LeE~LGV~pGsVSPFaLlND~e~kVkLVIDq~L~~~e~I~fHP~~NTaTI~IS~~DL~KFL~slGhep~~VDfsa   78 (236)
                      +++++.+|+.+|+|+|||++||..+.|++|+|+++...+.+.|||+.|+.++.|+++||.+|+...||++.||||++
T Consensus       105 eel~~~tG~~~G~v~P~Gl~~d~~~~v~vviD~sl~~~~~i~~~ag~~~~~i~l~~~dL~~~~~~~~~~~~~v~~~~  181 (181)
T 1vki_A          105 EKMLEYLGVVPGSVTVFGAINDTARQVTFVLDSDLLENELVNGHPLSNDQTTTIASKDLIRFLEATGHAPLVLKVSE  181 (181)
T ss_dssp             HHHHHHHCCCTTCCCGGGGGGCTTCCEEEEEETTGGGSSEEEECSSSTTEEEEEEHHHHHHHHHHTTCCCEEECCBC
T ss_pred             HHHHHHHCCCcceECcceeccCCCCCCEEEEchHHhcCCeEEEeCCCCCeEEEECHHHHHHHHHhcCCCeEEEeCCC
Confidence            67889999999999999999999999999999999999999999999999999999999999999999999999964

>3op6_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology; HET: MSE; 2.00A {Legionella pneumophila subsp}

Probab=98.92  E-value=8.6e-10  Score=88.82  Aligned_cols=60  Identities=22%  Similarity=0.380  Sum_probs=55.9

Q ss_pred             hHhhhhh-CCCCCceeccccccCCCCCeEEEEccCccCCCeeeeecCCCcceeEecHHHHHHHHH
Q 026582            2 VCMCLLF-KVPLGSVTPFALVNESARDVALLLDKGFKAQERCFFHPLSNDMSISLNTNDLDKFLK   65 (236)
Q Consensus         2 e~LeE~L-GV~pGsVSPFaLlND~e~kVkLVIDq~L~~~e~I~fHP~~NTaTI~IS~~DL~KFL~   65 (236)
                      |+|++.| |+.+|+|+|||+.++    +++|+|+++...+.+.||++.++.++.|+++||.+|+.
T Consensus        86 e~l~~~~tG~~~G~v~P~g~~~~----~~v~~D~~l~~~~~i~~~ag~~~~~i~l~~~dl~~~~~  146 (152)
T 3op6_A           86 SEFEGKFAECDVGAMPPFGNLYG----LPVLVSTKLSAQDNILFNAGSHSELMQLSFGDFEKLVK  146 (152)
T ss_dssp             GGTGGGCTTSCTTCCCSCGGGGT----CCEEEEHHHHTSSEEEEECSSSSEEEEEEHHHHHHHHC
T ss_pred             HHHHHHhcCCCcCCCCCCCCCcC----CeEEEehhhccCCeEEEeCCCCCcEEEECHHHHHHHhc
Confidence            5677786 999999999999874    99999999999999999999999999999999999986

>2z0x_A Putative uncharacterized protein TTHA1699; protein-cyssa complex, translation, structural genomics, NPPSFA; HET: 5CA; 1.64A {Thermus thermophilus} PDB: 2z0k_A* 2cx5_A* 3rij_A 3ri0_A

Probab=98.89  E-value=2.8e-09  Score=85.63  Aligned_cols=67  Identities=13%  Similarity=0.115  Sum_probs=60.7

Q ss_pred             hHhhhhhCCCCCceeccccccCCCCCeEEEEccCccCCCeeeeecCCCcceeEecHHHHHHHHHhcCCCcEEEEcc
Q 026582            2 VCMCLLFKVPLGSVTPFALVNESARDVALLLDKGFKAQERCFFHPLSNDMSISLNTNDLDKFLKSIGRDPAYVDLE   77 (236)
Q Consensus         2 e~LeE~LGV~pGsVSPFaLlND~e~kVkLVIDq~L~~~e~I~fHP~~NTaTI~IS~~DL~KFL~slGhep~~VDfs   77 (236)
                      |++++.+|+.+|+|+|||+.    ..+++|+|+++...+.+.+|++.++.++.|+.+||.+++.     ..++|+.
T Consensus        90 e~~~~~tG~~~G~v~P~gl~----~~v~v~iD~~l~~~~~i~~~ag~~~~~i~l~~~dl~~~~~-----~~~~di~  156 (158)
T 2z0x_A           90 EEVRELTGFAIGGVPPVGHN----TPLPAYLDEDLLGYPEVWAAGGTPRALFRATPKELLALTG-----AQVADLK  156 (158)
T ss_dssp             HHHHHHHSSCTTSCCSSCCS----SCCCEEEEGGGGGSSCEEEECSSTTEEEEECHHHHHHHHC-----CEEECCB
T ss_pred             HHHHHHhCCCCccCCcCCCC----CCCcEEEEhHHhcCCcEEEECCCCCEEEEECHHHHHHHhC-----CEEEEee
Confidence            67889999999999999985    4799999999999999999999999999999999999986     2467765

>1dbu_A HI1434, cysteinyl-tRNA(Pro) deacylase; structural genomics, YBAK, structure 2 function project, S2F, hydrolase; HET: MSE; 1.80A {Haemophilus influenzae} SCOP: d.116.1.1 PDB: 1dbx_A

Probab=98.87  E-value=3.4e-09  Score=84.93  Aligned_cols=68  Identities=15%  Similarity=0.228  Sum_probs=61.0

Q ss_pred             hHhhhhhCCCCCceeccccccCCCCCeEEEEccCccCCCeeeeecCCCcceeEecHHHHHHHHHhcCCCcEEEEccC
Q 026582            2 VCMCLLFKVPLGSVTPFALVNESARDVALLLDKGFKAQERCFFHPLSNDMSISLNTNDLDKFLKSIGRDPAYVDLEA   78 (236)
Q Consensus         2 e~LeE~LGV~pGsVSPFaLlND~e~kVkLVIDq~L~~~e~I~fHP~~NTaTI~IS~~DL~KFL~slGhep~~VDfsa   78 (236)
                      +++++.+|+.+|+|+|||+.    ..|.+|+|+++...+.+.+|++.++.++.|+++||.+++..     .++|+..
T Consensus        90 e~~~~~tG~~~G~v~P~g~~----~~v~v~iD~~l~~~~~i~~~ag~~~~~~~v~~~dl~~~~~~-----~~~di~~  157 (158)
T 1dbu_A           90 DAAQKSTGYLVGGISPLGQK----KRVKTVINSTALEFETIYVSGGKRGLSVEIAPQDLAKVLGA-----EFTDIVD  157 (158)
T ss_dssp             HHHHHHHSSCTTSCCSSSCS----SCCCEEEEGGGGGSSCEEEECSSTTEEEEECHHHHHHHHTC-----EEECCBC
T ss_pred             HHHHHHhCCCCccCCCCCCC----CCCEEEEEhHHhcCCeEEEeCCCCCcEEEECHHHHHHHhCC-----EEEeeec
Confidence            67889999999999999973    47999999999999999999999999999999999999863     5777753

>2dxa_A Protein YBAK; trans-editing domain, prolyl-tRNA synthetase, structural genomics, NPPSFA; HET: MSE; 1.58A {Escherichia coli}

Probab=98.67  E-value=1.8e-08  Score=81.78  Aligned_cols=67  Identities=15%  Similarity=0.284  Sum_probs=59.8

Q ss_pred             hHhhhhhCCCCCceeccccccCCCCCeEEEEccCccCCCeeeeecCCCcceeEecHHHHHHHHHhcCCCcEEEEcc
Q 026582            2 VCMCLLFKVPLGSVTPFALVNESARDVALLLDKGFKAQERCFFHPLSNDMSISLNTNDLDKFLKSIGRDPAYVDLE   77 (236)
Q Consensus         2 e~LeE~LGV~pGsVSPFaLlND~e~kVkLVIDq~L~~~e~I~fHP~~NTaTI~IS~~DL~KFL~slGhep~~VDfs   77 (236)
                      +++++.+|+.+|.|+|||+.    ..|.+|+|+++...+.+.+|++.++.++.|+++||.+++..     .++|+.
T Consensus        97 e~~~~~tG~~~G~v~P~g~~----~~v~v~iD~~l~~~~~i~~~ag~~~~~i~~~~~dl~~~~~~-----~~~di~  163 (166)
T 2dxa_A           97 MVAQRSTGYLVGGISPLGQK----KRLPTIIDAPAQEFATIYVSGGKRGLDIELAAGDLAKILDA-----KFADIA  163 (166)
T ss_dssp             HHHHHHHSSCTTCCCSSSCS----SCCCEEEEGGGGGSSCEEEEEEETTEEEEECHHHHHHHHTC-----EEECCE
T ss_pred             HHHHHccCCCCccCCCcCCC----CCCeEEEEhHHhcCCeEEEcCCCCCcEEEECHHHHHHHhCC-----EEEEEe
Confidence            67888999999999999983    47999999999999999999999999999999999999863     466664

>1wdv_A Hypothetical protein APE2540; structural genomics, unknown function, riken structural genomics/proteomics initiative, RSGI; 1.70A {Aeropyrum pernix} SCOP: d.116.1.1

Probab=98.64  E-value=4.5e-08  Score=77.58  Aligned_cols=67  Identities=16%  Similarity=0.265  Sum_probs=59.5

Q ss_pred             hHhhhhhCCCCCceeccccccCCCCCeEEEEccCccCCCeeeeecCCCcceeEecHHHHHHHHHhcCCCcEEEEcc
Q 026582            2 VCMCLLFKVPLGSVTPFALVNESARDVALLLDKGFKAQERCFFHPLSNDMSISLNTNDLDKFLKSIGRDPAYVDLE   77 (236)
Q Consensus         2 e~LeE~LGV~pGsVSPFaLlND~e~kVkLVIDq~L~~~e~I~fHP~~NTaTI~IS~~DL~KFL~slGhep~~VDfs   77 (236)
                      |++++.+|+.+|+|+|||+.+    .+++|+|+++...+.+.+|++.+..++.++++||.+++..     .++|+.
T Consensus        85 ~e~~~~tG~~~G~v~P~g~~~----~v~v~~D~~l~~~~~v~~~~g~~~~~~~v~~~dl~~~~~~-----~~~di~  151 (152)
T 1wdv_A           85 NEVVELTGYPVGGVPPVALPP----NIVLVVDRILLSRKKVYGGGGRENALLEFSPRELVEATGA-----VVADVS  151 (152)
T ss_dssp             HHHHHHHSSCGGGCCSSSCCT----TCEEEEEGGGTTCSCEEEECSSTTEEEEECHHHHHHHHTC-----EEECCB
T ss_pred             HHHHHHhCCCCCCCCcCCCCC----CCcEEEehHHhcCCeEEEcCCCCCeEEEECHHHHHHHhCC-----EEEeee
Confidence            678899999999999999864    8999999999999889999999999999999999988742     466653

>3mem_A Putative signal transduction protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.25A {Marinobacter aquaeolei}

Probab=98.34  E-value=1.2e-07  Score=88.54  Aligned_cols=73  Identities=12%  Similarity=0.139  Sum_probs=64.0

Q ss_pred             hHhhhhh-CCCCCceeccccccCCCCCeEEEEccCccCCCeeeeecCCCcceeEecHHHHHHHHHhcCCCcEEEEccC
Q 026582            2 VCMCLLF-KVPLGSVTPFALVNESARDVALLLDKGFKAQERCFFHPLSNDMSISLNTNDLDKFLKSIGRDPAYVDLEA   78 (236)
Q Consensus         2 e~LeE~L-GV~pGsVSPFaLlND~e~kVkLVIDq~L~~~e~I~fHP~~NTaTI~IS~~DL~KFL~slGhep~~VDfsa   78 (236)
                      +++++.+ |+.+|.|||||+.+    .+.+|||+++...+.+.+|++++..++.|+++||.+++...+|.-.-++.+.
T Consensus        74 ~~~~~~~~g~~~Ggv~P~g~~~----~~~~~iD~~l~~~~~i~~~~G~~~~~i~l~~~dl~~~~~~~~~~~f~~~~~~  147 (457)
T 3mem_A           74 REQVRVRQKAGLQELPALPSLT----GWPTVVDRRVDELEAVALELGEQDLGLMMPAEDFRQLTAKAARHDFAVDTAN  147 (457)
T ss_dssp             HHHHHHHHHHTCSSCCSCGGGT----CCCEEEEHHHHHCSEEEEECSSSSEEEEEEHHHHHHHTTTSEEECCEECGGG
T ss_pred             HHHHHHcCCCCCCCCCCCCCCc----CCCEEEehhhccCCEEEEECCCCCceEEECHHHHHHHHccCCcccccccccc
Confidence            5688888 69999999999987    5999999999999999999999999999999999999998877544444443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	236
d1vjfa_	168	d.116.1.1 (A:) Hypothetical protein CC0111 {Caulob	7e-20
d1vkia_	165	d.116.1.1 (A:) Hypothetical protein Atu3699 {Agrob	3e-14

>d1vjfa_ d.116.1.1 (A:) Hypothetical protein CC0111 {Caulobacter crescentus [TaxId: 155892]} Length = 168

class: Alpha and beta proteins (a+b)
fold: YbaK/ProRS associated domain
superfamily: YbaK/ProRS associated domain
family: YbaK/ProRS associated domain
domain: Hypothetical protein CC0111
species: Caulobacter crescentus [TaxId: 155892]

 Score = 81.3 bits (200), Expect = 7e-20
 Identities = 28/77 (36%), Positives = 42/77 (54%)

Query: 7   LFKVPLGSVTPFALVNESARDVALLLDKGFKAQERCFFHPLSNDMSISLNTNDLDKFLKS 66
              V  GSVT F L+N++ + V  +LDK     +   FHPL ND + +++   L +FL +
Sbjct: 92  TLGVTPGSVTAFGLINDTEKRVRFVLDKALADSDPVNFHPLKNDATTAVSQAGLRRFLAA 151

Query: 67  IGRDPAYVDLEANPAVG 83
           +G +P  VD  A   VG
Sbjct: 152 LGVEPMIVDFAAMEVVG 168

>d1vkia_ d.116.1.1 (A:) Hypothetical protein Atu3699 {Agrobacterium tumefaciens, strain C58 [TaxId: 358]} Length = 165

class: Alpha and beta proteins (a+b)
fold: YbaK/ProRS associated domain
superfamily: YbaK/ProRS associated domain
family: YbaK/ProRS associated domain
domain: Hypothetical protein Atu3699
species: Agrobacterium tumefaciens, strain C58 [TaxId: 358]

 Score = 65.8 bits (160), Expect = 3e-14
 Identities = 25/67 (37%), Positives = 38/67 (56%)

Query: 10  VPLGSVTPFALVNESARDVALLLDKGFKAQERCFFHPLSNDMSISLNTNDLDKFLKSIGR 69
           V  GSVT F  +N++AR V  +LD      E    HPLSND + ++ + DL +FL++ G 
Sbjct: 97  VVPGSVTVFGAINDTARQVTFVLDSDLLENELVNGHPLSNDQTTTIASKDLIRFLEATGH 156

Query: 70  DPAYVDL 76
            P  + +
Sbjct: 157 APLVLKV 163

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	236
d1vjfa_	168	Hypothetical protein CC0111 {Caulobacter crescentu	99.83
d1vkia_	165	Hypothetical protein Atu3699 {Agrobacterium tumefa	99.8
d1dbxa_	157	Hypothetical protein HI1434 (YbaK homologue) {Haem	98.93
d1wdva_	150	Hypothetical protein APE2540 {Aeropyrum pernix [Ta	98.73

>d1vjfa_ d.116.1.1 (A:) Hypothetical protein CC0111 {Caulobacter crescentus [TaxId: 155892]}

class: Alpha and beta proteins (a+b)
fold: YbaK/ProRS associated domain
superfamily: YbaK/ProRS associated domain
family: YbaK/ProRS associated domain
domain: Hypothetical protein CC0111
species: Caulobacter crescentus [TaxId: 155892]

Probab=99.83  E-value=2.6e-21  Score=157.52  Aligned_cols=82  Identities=35%  Similarity=0.604  Sum_probs=79.4

Q ss_pred             hHhhhhhCCCCCceeccccccCCCCCeEEEEccCccCCCeeeeecCCCcceeEecHHHHHHHHHhcCCCcEEEEccCCCC
Q 026582            2 VCMCLLFKVPLGSVTPFALVNESARDVALLLDKGFKAQERCFFHPLSNDMSISLNTNDLDKFLKSIGRDPAYVDLEANPA   81 (236)
Q Consensus         2 e~LeE~LGV~pGsVSPFaLlND~e~kVkLVIDq~L~~~e~I~fHP~~NTaTI~IS~~DL~KFL~slGhep~~VDfsa~p~   81 (236)
                      |++++++|+.+|+|||||++||.++.|++|||+++++.+.++|||++|+.||.|+.+||.|||+++||+|.||||++.++
T Consensus        87 e~~~~~~G~~~G~v~Pfg~~~d~~~~v~v~iD~~l~~~~~i~~~~g~~~~ti~l~~~dl~k~l~~~~~~p~~~d~~~~~~  166 (168)
T d1vjfa_          87 EMMLETLGVTPGSVTAFGLINDTEKRVRFVLDKALADSDPVNFHPLKNDATTAVSQAGLRRFLAALGVEPMIVDFAAMEV  166 (168)
T ss_dssp             HHHHHHHCCCTTCCCGGGGGGCTTCCEEEEEEHHHHTCSSEEECSSSTTEEEEECHHHHHHHHHHTTCCCEEEETTTTEE
T ss_pred             HHHHHccCCCCCcccccccccCCccCcceeechhHhcCCEEEEeCCCCCeEEEECHHHHHHHHHHcCCCcEEEEcccCCC
Confidence            67899999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             CC
Q 026582           82 VG   83 (236)
Q Consensus        82 vg   83 (236)
                      +|
T Consensus       167 ~~  168 (168)
T d1vjfa_         167 VG  168 (168)
T ss_dssp             C-
T ss_pred             CC
Confidence            87

>d1vkia_ d.116.1.1 (A:) Hypothetical protein Atu3699 {Agrobacterium tumefaciens, strain C58 [TaxId: 358]}

class: Alpha and beta proteins (a+b)
fold: YbaK/ProRS associated domain
superfamily: YbaK/ProRS associated domain
family: YbaK/ProRS associated domain
domain: Hypothetical protein Atu3699
species: Agrobacterium tumefaciens, strain C58 [TaxId: 358]

Probab=99.80  E-value=3.7e-20  Score=150.53  Aligned_cols=77  Identities=34%  Similarity=0.501  Sum_probs=75.1

Q ss_pred             hHhhhhhCCCCCceeccccccCCCCCeEEEEccCccCCCeeeeecCCCcceeEecHHHHHHHHHhcCCCcEEEEccC
Q 026582            2 VCMCLLFKVPLGSVTPFALVNESARDVALLLDKGFKAQERCFFHPLSNDMSISLNTNDLDKFLKSIGRDPAYVDLEA   78 (236)
Q Consensus         2 e~LeE~LGV~pGsVSPFaLlND~e~kVkLVIDq~L~~~e~I~fHP~~NTaTI~IS~~DL~KFL~slGhep~~VDfsa   78 (236)
                      |++++++|+.+|+|||||++||.++.|++|||+++...+.++|||++|+.||.|+++||.+||+++||+|.+|||++
T Consensus        89 e~~~~~~g~~~G~V~Pfg~~~d~~~~v~viiD~~l~~~~~i~~~~g~~~~ti~i~~~dl~k~l~~~~h~~~~~~~~e  165 (165)
T d1vkia_          89 EKMLEYLGVVPGSVTVFGAINDTARQVTFVLDSDLLENELVNGHPLSNDQTTTIASKDLIRFLEATGHAPLVLKVSE  165 (165)
T ss_dssp             HHHHHHHCCCTTCCCGGGGGGCTTCCEEEEEETTGGGSSEEEECSSSTTEEEEEEHHHHHHHHHHTTCCCEEECCBC
T ss_pred             HHHHHhhCCCcccccchhhccCcccccceehhhHHhcCCEEEEeCCCCCeEEEECHHHHHHHHHHcCCCeEEEeCCC
Confidence            67999999999999999999999999999999999999999999999999999999999999999999999999975

>d1dbxa_ d.116.1.1 (A:) Hypothetical protein HI1434 (YbaK homologue) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a+b)
fold: YbaK/ProRS associated domain
superfamily: YbaK/ProRS associated domain
family: YbaK/ProRS associated domain
domain: Hypothetical protein HI1434 (YbaK homologue)
species: Haemophilus influenzae [TaxId: 727]

Probab=98.93  E-value=7.6e-10  Score=88.10  Aligned_cols=68  Identities=15%  Similarity=0.219  Sum_probs=61.8

Q ss_pred             hHhhhhhCCCCCceeccccccCCCCCeEEEEccCccCCCeeeeecCCCcceeEecHHHHHHHHHhcCCCcEEEEccC
Q 026582            2 VCMCLLFKVPLGSVTPFALVNESARDVALLLDKGFKAQERCFFHPLSNDMSISLNTNDLDKFLKSIGRDPAYVDLEA   78 (236)
Q Consensus         2 e~LeE~LGV~pGsVSPFaLlND~e~kVkLVIDq~L~~~e~I~fHP~~NTaTI~IS~~DL~KFL~slGhep~~VDfsa   78 (236)
                      |++.+++|+.+|+|+|||+.+    .+.+|+|+++...+.+.+++++++.++.|+++||.+|+..     +++|+.+
T Consensus        89 e~~~~~tG~~~G~v~P~g~~~----~i~v~iD~~l~~~~~v~~~aG~~~~~i~i~~~dl~~l~~~-----~v~di~e  156 (157)
T d1dbxa_          89 DAAQKSTGYLVGGISPLGQKK----RVKTVINSTALEFETIYVSGGKRGLSVEIAPQDLAKVLGA-----EFTDIVD  156 (157)
T ss_dssp             HHHHHHHSCCTTCCCSSSCSS----CCCEEEEGGGGGSSCEEEECSSTTEEEEECHHHHHHHHTC-----EEECCBC
T ss_pred             HHHHHccCCccceeecccccc----cchHHHhHHHhhCCEEEEeCCCCCeEEEECHHHHHHHhCC-----EEEeeec
Confidence            678999999999999999875    7999999999999999999999999999999999999963     6777654

>d1wdva_ d.116.1.1 (A:) Hypothetical protein APE2540 {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a+b)
fold: YbaK/ProRS associated domain
superfamily: YbaK/ProRS associated domain
family: YbaK/ProRS associated domain
domain: Hypothetical protein APE2540
species: Aeropyrum pernix [TaxId: 56636]

Probab=98.73  E-value=9.5e-09  Score=81.35  Aligned_cols=67  Identities=16%  Similarity=0.261  Sum_probs=59.9

Q ss_pred             hHhhhhhCCCCCceeccccccCCCCCeEEEEccCccCCCeeeeecCCCcceeEecHHHHHHHHHhcCCCcEEEEcc
Q 026582            2 VCMCLLFKVPLGSVTPFALVNESARDVALLLDKGFKAQERCFFHPLSNDMSISLNTNDLDKFLKSIGRDPAYVDLE   77 (236)
Q Consensus         2 e~LeE~LGV~pGsVSPFaLlND~e~kVkLVIDq~L~~~e~I~fHP~~NTaTI~IS~~DL~KFL~slGhep~~VDfs   77 (236)
                      +++++.+|+.+|+|+|||+.+    .+.+++|+++...+.+.++++.+..++.|+++||.++..     .+++|+.
T Consensus        83 ~e~~~~tG~~~G~v~P~g~~~----~~~v~iD~~l~~~~~v~~~aG~~~~~~~i~~~dL~~~~~-----~~~~di~  149 (150)
T d1wdva_          83 NEVVELTGYPVGGVPPVALPP----NIVLVVDRILLSRKKVYGGGGRENALLEFSPRELVEATG-----AVVADVS  149 (150)
T ss_dssp             HHHHHHHSSCGGGCCSSSCCT----TCEEEEEGGGTTCSCEEEECSSTTEEEEECHHHHHHHHT-----CEEECCB
T ss_pred             HHHHHhcCCCcceeecccCCC----CCeEEEEhHHhcCCeEEEeCCCCCeEEEECHHHHHHHHC-----CEEEecc
Confidence            678999999999999999965    699999999999999999999999999999999988874     3566654