Citrus Sinensis ID: 026608

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230------
Protein Sequence
MAAILSPSSPIISSSATTTACKTPTKPPHSSLFTPTKQSLTSLLTATLATTTLLTASPSLAEPAQTYHIYYGTAASAANYGGYGGNSDKKASAEYIYDVPDGWKERLVSKVEKGTNGTDSEFYNPKKRTEKEYLTFLAGFRQLAPKDAVLNNLALSDVDLQDLLASADKVASEEKKDDKGQLYYVYEIDGVGSHSLISVTCANNKLYAHFVNAPTPEWNRDEETLRHVHESFKTVQ
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHccccccccccccccEEEEEccccccccccccccccccccccEEEEcccccEEEEEEEcccccccccEEEEccccccccEEEEEcccccccccHHHHHHHHHHccccccccccccccccccEEEEccccEEEEEEEcccccEEEEEEEEEccEEEEEEEEcccccHHHHHHHHHHHHHccEEcc
Secondary Structure Prediction (SSPRO)
cccHcccccccEccccccccccccccccccccccccHHHHHHHHHHHHHHHHHccccccccccccccEEEEccccccccccccccccccccccEEEEEcccccEEEcccEEEccccccccEEEcccccccHEEEEEEccHHHcccHHHHHHHHcccccccHHHccccccEEEccccccccEEEEEEEEcccccEEEEEEEEEccEEEEEEEEcccHHHHHcHHHHHHHHHHccccc
Coil and Loop (DISEMBL)
maailspsspiisssatttacktptkpphsslftptkqSLTSLLTATLATTTlltaspslaepaqtyhIYYGtaasaanyggyggnsdkkasaeyiydvpdgWKERLVSKVekgtngtdsefynpkkrtEKEYLTFLAGfrqlapkdavlnnlalsdvDLQDLLASADKVAseekkddkgqlYYVYEIDGVGSHSLISVTCANNKLYAhfvnaptpewnrdeeTLRHVHESFKTVQ
Flexible Loop (DISEMBL)
maailspsspiisssatttaCKTPTKPPHSSLFTPTKQSLTSLLTATLATTTLLTASPSLAEPAQTYHIYYGTAASAANYGGYGGNSDKKASAEYIYDVPDGWKERLVskvekgtngtdsefynpkkrTEKEYLTFLAGFRQLAPKDAVLNNLALSDVDLQDLLASADkvaseekkddkgqLYYVYEIDGVGSHSLISVTCANNKLYAHFVNAPTPEWNRDEETLRHVHESFKTVQ
Low Complexity Region (SEG)
MAAILspsspiisssatttacktptkppHSSLFTPTKQsltslltatlatttlltaspslaEPAQTYHIyygtaasaanyggyggnsDKKASAEYIYDVPDGWKERLVSKVEKGTNGTDSEFYNPKKRTEKEYLTFLAGFRQLAPKDAVLNNLALSDVDLQDLLASADKVASEEKKDDKGQLYYVYEIDGVGSHSLISVTCANNKLYAHFVNAPTPEWNRDEETLRHVHESFKTVQ
Disordered region (IsUnstruct)
****************************************TSLLTATLATTTLLTASPSLAEPAQTYHIYYGTAASAANYGGYGGNSDKKASAEYIYDVPDGWKERLVS*********************KEYLTFLAGFRQLAPKDAVLNNLALSDVDLQDLLA**************GQLYYVYEIDGVGSHSLISVTCANNKLYAHFVNAPTP********************
Disordered Region (DISOPRED)
**********************************************TLATTTLLTAS***AEPAQTYHIYYGTAASAANYGGYGGNSDKKASAEYIYDVPDGWKERLVSKVEKGTNGTDSEFYNPKKRTEKEYLTFLAGFRQLAPKDAVLNNLALSDVD*******************KGQLYYVYEIDGVGSHSLISVTCANNKLYAHFVNAPTPEWNRDEETLRHVHESFKTVQ
Disordered Region (DISEMBL)
*********************************TPTKQSLTSLLTATLATTTLLTASPSLAEPAQTYHIYYGTAASAANYGGYGGNSDKKASAEYIYDVPDGWKERLVSKVEKGTNGTDSEFYNPKKRTEKEYLTFLAGFRQLAPKDAVLNNLALSDVDLQDLLASAD*********DKGQLYYVYEIDGVGSHSLISVTCANNKLYAHFVNAPTPEWNRDEETLRHVHESFKTVQ
Disordered Region (DISPRO)
*****************************SSLFTPTKQSLTSLLTATLATTTLLTASPSLAEPAQTYHIYYGTAASAANYGGYGGNSDKKASAEYIYDVPDGWKERLVSKVEKGTNGTDSEFYNPKKRTEKEYLTFLAGFRQLAPKDAVLNNLALSDVDLQDLLASADKVASEEKKDDKGQLYYVYEIDGVGSHSLISVTCANNKLYAHFVNAPTPEWNRDEETLRHVHESFKTVQ
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MAAILSPSSPIISSSATTTACKTPTKPPHSSLFTPTKQSLTSLLTATLATTTLLTASPSLAEPAQTYHIYYGTAASAANYGGYGGNSDKKASAEYIYDVPDGWKERLVSKVEKGTNGTDSEFYNPKKRTEKEYLTFLAGFRQLAPKDAVLNNLALSDVDLQDLLASADKVASEEKKDDKGQLYYVYEIDGVGSHSLISVTCANNKLYAHFVNAPTPEWNRDEETLRHVHESFKTVQ
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	236	2.2.26 [Sep-21-2011]
P82658	229	Thylakoid lumenal 19 kDa	yes	no	0.957	0.986	0.668	3e-87
O49292	260	PsbP domain-containing pr	no	no	0.546	0.496	0.273	7e-06

>sp|P82658|TL19_ARATH Thylakoid lumenal 19 kDa protein, chloroplastic OS=Arabidopsis thaliana GN=At3g63540 PE=1 SV=2

 Score =  321 bits (822), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 157/235 (66%), Positives = 185/235 (78%), Gaps = 9/235 (3%)

Query: 1   MAAILSPSSPIISSSATTTACKTPTKPPHSSLFTPTKQSLTSLLTATLATTTLLTASPSL 60
           MA  +  +SP+IS      A +TP  P   +    T  +     T+ L   T++   P+ 
Sbjct: 1   MATKIFLASPVIS------ATRTPIVPKAIASRLGTSLAAALAATSVL---TMVPVLPAA 51

Query: 61  AEPAQTYHIYYGTAASAANYGGYGGNSDKKASAEYIYDVPDGWKERLVSKVEKGTNGTDS 120
            E  QTY IYYGTAASAANYGGYGGNSD+K SAEY+YDVP+GWKERLVSKVEKGTNGTDS
Sbjct: 52  GEGNQTYKIYYGTAASAANYGGYGGNSDRKTSAEYVYDVPEGWKERLVSKVEKGTNGTDS 111

Query: 121 EFYNPKKRTEKEYLTFLAGFRQLAPKDAVLNNLALSDVDLQDLLASADKVASEEKKDDKG 180
           EFYNPKK+TEKEYLTFLAGFRQLAP+D +LNNLALSDV+LQDL+A ADKV SEE+KD+ G
Sbjct: 112 EFYNPKKKTEKEYLTFLAGFRQLAPRDVILNNLALSDVELQDLIAGADKVVSEERKDETG 171

Query: 181 QLYYVYEIDGVGSHSLISVTCANNKLYAHFVNAPTPEWNRDEETLRHVHESFKTV 235
           Q+YY+YEIDGVG HSLI+VTC+ N+LYAHFVNAP PEWNRD +TL H+ +SFKTV
Sbjct: 172 QVYYLYEIDGVGKHSLITVTCSKNRLYAHFVNAPAPEWNRDHDTLTHLRDSFKTV 226

Arabidopsis thaliana (taxid: 3702)

>sp|O49292|PPD4_ARATH PsbP domain-containing protein 4, chloroplastic OS=Arabidopsis thaliana GN=PPD4 PE=1 SV=2

 Score = 51.2 bits (121), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 43/157 (27%), Positives = 67/157 (42%), Gaps = 28/157 (17%)

Query: 95  YIYDVPDGWKERLVSKVEKGTNGTDSEFYNPKKRTEKEYLTFLAGFRQLAPKDAVLNNLA 154
           Y + VP  W E  VS  + G    D  F +PK+      L+ +     +AP     +NL 
Sbjct: 116 YAFSVPQDWNEVPVSIADLGGTEIDLRFASPKEGR----LSVI-----VAPVLRFADNLG 166

Query: 155 LSDVDLQDLLASA----------------DKVASEEKKDDKGQLYYVYEIDGVGSHSLIS 198
             DV ++++   A                 KV S    +  G+LYY +E++    H LI+
Sbjct: 167 -DDVKIENIGQPAKVINAFGPEVIGENVEGKVLSSNVAEHDGRLYYQFELEP--PHVLIT 223

Query: 199 VTCANNKLYAHFVNAPTPEWNRDEETLRHVHESFKTV 235
            T A N+LY   V     +W R  + L+ +  SF+ V
Sbjct: 224 ATAAGNRLYLFSVTGNGLQWKRHYKDLKRIASSFRIV 260

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	236
255571642	240	Thylakoid lumenal 19 kDa protein, chloro	0.995	0.979	0.738	8e-94
351725327	246	uncharacterized protein LOC100305670 [Gl	0.983	0.943	0.735	1e-91
224104053	237	predicted protein [Populus trichocarpa]	0.754	0.751	0.882	1e-91
225450155	247	PREDICTED: thylakoid lumenal 19 kDa prot	0.834	0.797	0.796	5e-90
297821278	229	hypothetical protein ARALYDRAFT_907941 [	0.927	0.956	0.702	6e-90
147787657	248	hypothetical protein VITISV_028610 [Viti	0.834	0.794	0.791	2e-89
356557150	240	PREDICTED: thylakoid lumenal 19 kDa prot	0.754	0.741	0.849	1e-86
110740201	229	hypothetical protein [Arabidopsis thalia	0.957	0.986	0.672	9e-86
92090800	229	RecName: Full=Thylakoid lumenal 19 kDa p	0.957	0.986	0.668	2e-85
388510340	241	unknown [Medicago truncatula]	0.754	0.738	0.820	2e-84

>gi|255571642|ref|XP_002526766.1| Thylakoid lumenal 19 kDa protein, chloroplast precursor, putative [Ricinus communis] gi|223533893|gb|EEF35620.1| Thylakoid lumenal 19 kDa protein, chloroplast precursor, putative [Ricinus communis]

 Score =  348 bits (894), Expect = 8e-94,   Method: Compositional matrix adjust.
 Identities = 175/237 (73%), Positives = 188/237 (79%), Gaps = 2/237 (0%)

Query: 1   MAAILSPSSPIISSSATTTACKT--PTKPPHSSLFTPTKQSLTSLLTATLATTTLLTASP 58
           MA ILSPS+   SS+AT    +   P K  H         +  +   A     T     P
Sbjct: 1   MATILSPSARFSSSTATQRPPQNLPPLKSQHPISSQKPLLATLTATIAATTILTATAPPP 60

Query: 59  SLAEPAQTYHIYYGTAASAANYGGYGGNSDKKASAEYIYDVPDGWKERLVSKVEKGTNGT 118
           SLA+PAQ Y +YYGTAASAANYGGYGGNSDKKASAEY+YDVP+GWKERLVSKVEKGTNGT
Sbjct: 61  SLADPAQAYRLYYGTAASAANYGGYGGNSDKKASAEYVYDVPEGWKERLVSKVEKGTNGT 120

Query: 119 DSEFYNPKKRTEKEYLTFLAGFRQLAPKDAVLNNLALSDVDLQDLLASADKVASEEKKDD 178
           DSEFYNPKKRTEKEYLTFLAGFRQLAPKD VLNNLALSDVDLQDL++ AD V SEEK DD
Sbjct: 121 DSEFYNPKKRTEKEYLTFLAGFRQLAPKDVVLNNLALSDVDLQDLISGADSVKSEEKNDD 180

Query: 179 KGQLYYVYEIDGVGSHSLISVTCANNKLYAHFVNAPTPEWNRDEETLRHVHESFKTV 235
            GQLYYVYEIDGVG HSLI VTCA NKLYAHFVNAPTPEWN+DEETLRH+HESFKTV
Sbjct: 181 NGQLYYVYEIDGVGKHSLIKVTCAKNKLYAHFVNAPTPEWNKDEETLRHLHESFKTV 237

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351725327|ref|NP_001235041.1| uncharacterized protein LOC100305670 [Glycine max] gi|255626267|gb|ACU13478.1| unknown [Glycine max]

 Score =  341 bits (875), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 175/238 (73%), Positives = 196/238 (82%), Gaps = 6/238 (2%)

Query: 4   ILSPSSPIISSSATTTACKTPTKPPHSS-----LFTPTKQSLTSLLTATLATTTLLTA-S 57
           + S  S I+SS+ATTT  K  +  PHS      L  P KQ LT+L  A    T L +A +
Sbjct: 6   MFSSPSAILSSAATTTTPKPSSAAPHSPSCKHPLLLPFKQPLTTLTAAAAIATILTSAPT 65

Query: 58  PSLAEPAQTYHIYYGTAASAANYGGYGGNSDKKASAEYIYDVPDGWKERLVSKVEKGTNG 117
           PSLA+ + +Y +YYGTAASAANYGGYGGNS+KK SAEY+YDVP GWKERLVSKVEKGTNG
Sbjct: 66  PSLAQESLSYKVYYGTAASAANYGGYGGNSNKKDSAEYVYDVPAGWKERLVSKVEKGTNG 125

Query: 118 TDSEFYNPKKRTEKEYLTFLAGFRQLAPKDAVLNNLALSDVDLQDLLASADKVASEEKKD 177
           TDSEFYNP+K+ EKEYLTFLAGFRQLAPKD +LNNLALSDVDLQDL+ +AD V SEE KD
Sbjct: 126 TDSEFYNPRKKAEKEYLTFLAGFRQLAPKDVILNNLALSDVDLQDLIGNADSVTSEEVKD 185

Query: 178 DKGQLYYVYEIDGVGSHSLISVTCANNKLYAHFVNAPTPEWNRDEETLRHVHESFKTV 235
           DKGQLYYVYEIDGVG+HSLISVTCA NKLYAHFVNAPTPEWNRD++ LRHVHESFKTV
Sbjct: 186 DKGQLYYVYEIDGVGTHSLISVTCAKNKLYAHFVNAPTPEWNRDKDVLRHVHESFKTV 243

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224104053|ref|XP_002313298.1| predicted protein [Populus trichocarpa] gi|222849706|gb|EEE87253.1| predicted protein [Populus trichocarpa]

 Score =  341 bits (875), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 157/178 (88%), Positives = 170/178 (95%)

Query: 58  PSLAEPAQTYHIYYGTAASAANYGGYGGNSDKKASAEYIYDVPDGWKERLVSKVEKGTNG 117
           PSLA+P+QT+HIYYGTAASAANYGGYGGNSDKKASAEY+YDVPDGWKERLVSKVEKGTNG
Sbjct: 59  PSLADPSQTFHIYYGTAASAANYGGYGGNSDKKASAEYVYDVPDGWKERLVSKVEKGTNG 118

Query: 118 TDSEFYNPKKRTEKEYLTFLAGFRQLAPKDAVLNNLALSDVDLQDLLASADKVASEEKKD 177
           TDSEFYNPKKRTEKEYLT+LAGFRQLAPKD+VLNNLALSDVDLQDL++ AD V S E+KD
Sbjct: 119 TDSEFYNPKKRTEKEYLTYLAGFRQLAPKDSVLNNLALSDVDLQDLISGADSVVSVEEKD 178

Query: 178 DKGQLYYVYEIDGVGSHSLISVTCANNKLYAHFVNAPTPEWNRDEETLRHVHESFKTV 235
             GQLYYVYEIDGVG HSLI VTCANNKLYAHFVNAPTPEWN+D+ETLRH+H+SFKTV
Sbjct: 179 GNGQLYYVYEIDGVGKHSLIKVTCANNKLYAHFVNAPTPEWNKDQETLRHLHQSFKTV 236

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225450155|ref|XP_002275752.1| PREDICTED: thylakoid lumenal 19 kDa protein, chloroplastic-like [Vitis vinifera]

 Score =  336 bits (862), Expect = 5e-90,   Method: Compositional matrix adjust.
 Identities = 157/197 (79%), Positives = 177/197 (89%)

Query: 39  SLTSLLTATLATTTLLTASPSLAEPAQTYHIYYGTAASAANYGGYGGNSDKKASAEYIYD 98
           +L   LTAT A   L T  PSLA+P ++Y+IYYGTAASAANYGGYGGNS+++ SAEY+YD
Sbjct: 48  NLIVTLTATAAALVLTTTPPSLADPPKSYNIYYGTAASAANYGGYGGNSNRQDSAEYVYD 107

Query: 99  VPDGWKERLVSKVEKGTNGTDSEFYNPKKRTEKEYLTFLAGFRQLAPKDAVLNNLALSDV 158
           VPDGWKERLVSKVEKGTNGTDSEFYNPKK++EKEYLTFL+GFRQLAPKD VLNNLALSDV
Sbjct: 108 VPDGWKERLVSKVEKGTNGTDSEFYNPKKKSEKEYLTFLSGFRQLAPKDVVLNNLALSDV 167

Query: 159 DLQDLLASADKVASEEKKDDKGQLYYVYEIDGVGSHSLISVTCANNKLYAHFVNAPTPEW 218
            LQDL++SAD V SEEKKD+KGQ+YYVYEIDGVG+HSLISVTCA NKLYAHFVNAP PEW
Sbjct: 168 SLQDLISSADSVKSEEKKDEKGQVYYVYEIDGVGAHSLISVTCAKNKLYAHFVNAPAPEW 227

Query: 219 NRDEETLRHVHESFKTV 235
            RD++TL H+HESFKTV
Sbjct: 228 TRDKDTLMHLHESFKTV 244

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297821278|ref|XP_002878522.1| hypothetical protein ARALYDRAFT_907941 [Arabidopsis lyrata subsp. lyrata] gi|297324360|gb|EFH54781.1| hypothetical protein ARALYDRAFT_907941 [Arabidopsis lyrata subsp. lyrata]

 Score =  336 bits (861), Expect = 6e-90,   Method: Compositional matrix adjust.
 Identities = 170/242 (70%), Positives = 192/242 (79%), Gaps = 23/242 (9%)

Query: 1   MAAILSPSSPIISSSATTTACKTPTKPPH--SSLFTPTKQSLTSLLTATLATTTLLTASP 58
           MA  +  +SP+IS      A +TP  P    S L TP        L ATLA T++LT  P
Sbjct: 1   MATKIFLASPVIS------ATRTPIAPKAIASRLGTP--------LAATLAATSVLTMVP 46

Query: 59  SLAEPA-----QTYHIYYGTAASAANYGGYGGNSDKKASAEYIYDVPDGWKERLVSKVEK 113
            L  PA     QTY IYYGTAASAANYGGYGGNSD+KASAEY+YDVP+GWKERLVSKVEK
Sbjct: 47  VL--PAAGGGNQTYKIYYGTAASAANYGGYGGNSDRKASAEYVYDVPEGWKERLVSKVEK 104

Query: 114 GTNGTDSEFYNPKKRTEKEYLTFLAGFRQLAPKDAVLNNLALSDVDLQDLLASADKVASE 173
           GTNGTDSEFYNPKK+TEKEYLTFLAGFRQLAP+D +LNNLALSDV+LQDL+A ADKV SE
Sbjct: 105 GTNGTDSEFYNPKKKTEKEYLTFLAGFRQLAPRDVILNNLALSDVELQDLIAGADKVVSE 164

Query: 174 EKKDDKGQLYYVYEIDGVGSHSLISVTCANNKLYAHFVNAPTPEWNRDEETLRHVHESFK 233
           E+KD+ GQ+YY+YEIDGVG HSLI+VTCA NKLYAHFVNAP PEWNRD +TL H+ +SFK
Sbjct: 165 ERKDETGQVYYLYEIDGVGKHSLITVTCAKNKLYAHFVNAPAPEWNRDHDTLTHLRDSFK 224

Query: 234 TV 235
           TV
Sbjct: 225 TV 226

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147787657|emb|CAN69573.1| hypothetical protein VITISV_028610 [Vitis vinifera]

 Score =  334 bits (857), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 156/197 (79%), Positives = 176/197 (89%)

Query: 39  SLTSLLTATLATTTLLTASPSLAEPAQTYHIYYGTAASAANYGGYGGNSDKKASAEYIYD 98
           +L   LTAT A   L    PSLA+P ++Y+IYYGTAASAANYGGYGGNS+++ SAEY+YD
Sbjct: 49  NLIVTLTATAAALVLTITPPSLADPPKSYNIYYGTAASAANYGGYGGNSNRQDSAEYVYD 108

Query: 99  VPDGWKERLVSKVEKGTNGTDSEFYNPKKRTEKEYLTFLAGFRQLAPKDAVLNNLALSDV 158
           VPDGWKERLVSKVEKGTNGTDSEFYNPKK++EKEYLTFL+GFRQLAPKD VLNNLALSDV
Sbjct: 109 VPDGWKERLVSKVEKGTNGTDSEFYNPKKKSEKEYLTFLSGFRQLAPKDVVLNNLALSDV 168

Query: 159 DLQDLLASADKVASEEKKDDKGQLYYVYEIDGVGSHSLISVTCANNKLYAHFVNAPTPEW 218
            LQDL++SAD V SEEKKD+KGQ+YYVYEIDGVG+HSLISVTCA NKLYAHFVNAP PEW
Sbjct: 169 SLQDLISSADSVKSEEKKDEKGQVYYVYEIDGVGAHSLISVTCAKNKLYAHFVNAPAPEW 228

Query: 219 NRDEETLRHVHESFKTV 235
            RD++TL H+HESFKTV
Sbjct: 229 TRDKDTLMHLHESFKTV 245

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356557150|ref|XP_003546881.1| PREDICTED: thylakoid lumenal 19 kDa protein, chloroplastic-like [Glycine max]

 Score =  325 bits (832), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 152/179 (84%), Positives = 165/179 (92%), Gaps = 1/179 (0%)

Query: 57  SPSLAEPAQTYHIYYGTAASAANYGGYGGNSDKKASAEYIYDVPDGWKERLVSKVEKGTN 116
           +PSLA+ +  Y +YYGTAASAANYGGYGGNS KK SAEY+YDVP GWKERLVSKVEKGTN
Sbjct: 60  APSLAQESP-YQVYYGTAASAANYGGYGGNSSKKDSAEYVYDVPAGWKERLVSKVEKGTN 118

Query: 117 GTDSEFYNPKKRTEKEYLTFLAGFRQLAPKDAVLNNLALSDVDLQDLLASADKVASEEKK 176
           GTDSEFYNPKK+ EKEYLTFLAGFRQLAPKD +LNNLALSDVDLQDL+A+AD V S+E K
Sbjct: 119 GTDSEFYNPKKKAEKEYLTFLAGFRQLAPKDVILNNLALSDVDLQDLIANADSVTSDEVK 178

Query: 177 DDKGQLYYVYEIDGVGSHSLISVTCANNKLYAHFVNAPTPEWNRDEETLRHVHESFKTV 235
           DDKGQLYYVYEIDGVG+HSLISVTCA NKLYAHFVNAPTPEWNRD++ LRHVHESFKTV
Sbjct: 179 DDKGQLYYVYEIDGVGTHSLISVTCAKNKLYAHFVNAPTPEWNRDKDMLRHVHESFKTV 237

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|110740201|dbj|BAF01999.1| hypothetical protein [Arabidopsis thaliana]

 Score =  322 bits (824), Expect = 9e-86,   Method: Compositional matrix adjust.
 Identities = 158/235 (67%), Positives = 185/235 (78%), Gaps = 9/235 (3%)

Query: 1   MAAILSPSSPIISSSATTTACKTPTKPPHSSLFTPTKQSLTSLLTATLATTTLLTASPSL 60
           MA  +  +SP+IS      A +TP  P   +    T  +     T+ L   T++   P+ 
Sbjct: 1   MATKIFLASPVIS------ATRTPIVPKAIASRLGTSLAAALAATSVL---TMVPVLPAA 51

Query: 61  AEPAQTYHIYYGTAASAANYGGYGGNSDKKASAEYIYDVPDGWKERLVSKVEKGTNGTDS 120
            E  QTY IYYGTAASAANYGGYGGNSD+K SAEY+YDVP+GWKERLVSKVEKGTNGTDS
Sbjct: 52  GEGNQTYKIYYGTAASAANYGGYGGNSDRKTSAEYVYDVPEGWKERLVSKVEKGTNGTDS 111

Query: 121 EFYNPKKRTEKEYLTFLAGFRQLAPKDAVLNNLALSDVDLQDLLASADKVASEEKKDDKG 180
           EFYNPKK+TEKEYLTFLAGFRQLAP+D +LNNLALSDV+LQDL+A ADKV SEE+KD+ G
Sbjct: 112 EFYNPKKKTEKEYLTFLAGFRQLAPRDVILNNLALSDVELQDLIAGADKVVSEERKDETG 171

Query: 181 QLYYVYEIDGVGSHSLISVTCANNKLYAHFVNAPTPEWNRDEETLRHVHESFKTV 235
           Q+YY+YEIDGVG HSLI+VTC+ NKLYAHFVNAP PEWNRD +TL H+ +SFKTV
Sbjct: 172 QVYYLYEIDGVGKHSLITVTCSKNKLYAHFVNAPAPEWNRDHDTLTHLRDSFKTV 226

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|92090800|sp|P82658.2|TL19_ARATH RecName: Full=Thylakoid lumenal 19 kDa protein, chloroplastic; AltName: Full=P19; Flags: Precursor gi|304557033|gb|ADM35939.1| chloroplast luminal 19 kDa protein [Arabidopsis thaliana] gi|304557035|gb|ADM35940.1| chloroplast luminal 19 kDa protein [Arabidopsis thaliana]

 Score =  321 bits (822), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 157/235 (66%), Positives = 185/235 (78%), Gaps = 9/235 (3%)

Query: 1   MAAILSPSSPIISSSATTTACKTPTKPPHSSLFTPTKQSLTSLLTATLATTTLLTASPSL 60
           MA  +  +SP+IS      A +TP  P   +    T  +     T+ L   T++   P+ 
Sbjct: 1   MATKIFLASPVIS------ATRTPIVPKAIASRLGTSLAAALAATSVL---TMVPVLPAA 51

Query: 61  AEPAQTYHIYYGTAASAANYGGYGGNSDKKASAEYIYDVPDGWKERLVSKVEKGTNGTDS 120
            E  QTY IYYGTAASAANYGGYGGNSD+K SAEY+YDVP+GWKERLVSKVEKGTNGTDS
Sbjct: 52  GEGNQTYKIYYGTAASAANYGGYGGNSDRKTSAEYVYDVPEGWKERLVSKVEKGTNGTDS 111

Query: 121 EFYNPKKRTEKEYLTFLAGFRQLAPKDAVLNNLALSDVDLQDLLASADKVASEEKKDDKG 180
           EFYNPKK+TEKEYLTFLAGFRQLAP+D +LNNLALSDV+LQDL+A ADKV SEE+KD+ G
Sbjct: 112 EFYNPKKKTEKEYLTFLAGFRQLAPRDVILNNLALSDVELQDLIAGADKVVSEERKDETG 171

Query: 181 QLYYVYEIDGVGSHSLISVTCANNKLYAHFVNAPTPEWNRDEETLRHVHESFKTV 235
           Q+YY+YEIDGVG HSLI+VTC+ N+LYAHFVNAP PEWNRD +TL H+ +SFKTV
Sbjct: 172 QVYYLYEIDGVGKHSLITVTCSKNRLYAHFVNAPAPEWNRDHDTLTHLRDSFKTV 226

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388510340|gb|AFK43236.1| unknown [Medicago truncatula]

 Score =  317 bits (813), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 146/178 (82%), Positives = 165/178 (92%)

Query: 58  PSLAEPAQTYHIYYGTAASAANYGGYGGNSDKKASAEYIYDVPDGWKERLVSKVEKGTNG 117
           PS+A  +  Y+IYYGTAASAANYGGYGGNS+KK SAEYIYDVP+GWKERL+SKVEKGTNG
Sbjct: 63  PSIAAESSPYNIYYGTAASAANYGGYGGNSNKKDSAEYIYDVPEGWKERLISKVEKGTNG 122

Query: 118 TDSEFYNPKKRTEKEYLTFLAGFRQLAPKDAVLNNLALSDVDLQDLLASADKVASEEKKD 177
           TDSEFYNPKKRTEKEYLTFL+GFRQLAPKDAVLNNLALSDV+LQD+++ AD V+SEE KD
Sbjct: 123 TDSEFYNPKKRTEKEYLTFLSGFRQLAPKDAVLNNLALSDVNLQDIISGADNVSSEEVKD 182

Query: 178 DKGQLYYVYEIDGVGSHSLISVTCANNKLYAHFVNAPTPEWNRDEETLRHVHESFKTV 235
           + GQ+YYVYEIDGV  HSLISVTCANNKLYAHFVNAPTPEWN+D++ L HVH+SFKT+
Sbjct: 183 ENGQVYYVYEIDGVAYHSLISVTCANNKLYAHFVNAPTPEWNKDKDLLTHVHKSFKTI 240

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	236
TAIR|locus:2025292	260	AT1G77090 [Arabidopsis thalian	0.588	0.534	0.258	6.7e-08

TAIR|locus:2025292 AT1G77090 [Arabidopsis thaliana (taxid:3702)]

 Score = 127 (49.8 bits), Expect = 6.7e-08, P = 6.7e-08
 Identities = 38/147 (25%), Positives = 62/147 (42%)

Query:    95 YIYDVPDGWKERLVSKVEKGTNGTDSEFYNPKKRTEKEYLTFLAGFRQLAPKDAVLNNLA 154
             Y + VP  W E  VS  + G    D  F +PK+      +  +  F      D  + N+ 
Sbjct:   116 YAFSVPQDWNEVPVSIADLGGTEIDLRFASPKEGRLSVIVAPVLRFADNLGDDVKIENIG 175

Query:   155 LSDVDLQ----DLLAS--ADKVASEEKKDDKGQLYYVYEIDGVGSHSLISVTCANNKLYA 208
                  +     +++      KV S    +  G+LYY +E++    H LI+ T A N+LY 
Sbjct:   176 QPAKVINAFGPEVIGENVEGKVLSSNVAEHDGRLYYQFELEP--PHVLITATAAGNRLYL 233

Query:   209 HFVNAPTPEWNRDEETLRHVHESFKTV 235
               V     +W R  + L+ +  SF+ V
Sbjct:   234 FSVTGNGLQWKRHYKDLKRIASSFRIV 260


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.312   0.129   0.373    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      236       172   0.00093  108 3  11 23  0.47    32
                                                     31  0.48    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  589 (63 KB)
  Total size of DFA:  158 KB (2094 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  18.18u 0.10s 18.28t   Elapsed:  00:00:38
  Total cpu time:  18.18u 0.10s 18.28t   Elapsed:  00:00:38
  Start:  Fri May 10 22:01:08 2013   End:  Fri May 10 22:01:46 2013

GO:0005509 "calcium ion binding" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009523 "photosystem II" evidence=IEA

GO:0009654 "oxygen evolving complex" evidence=IEA

GO:0015979 "photosynthesis" evidence=IEA

GO:0019898 "extrinsic to membrane" evidence=IEA

GO:0009543 "chloroplast thylakoid lumen" evidence=IDA

GO:0031977 "thylakoid lumen" evidence=IDA

GO:0009579 "thylakoid" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0000023 "maltose metabolic process" evidence=RCA

GO:0006098 "pentose-phosphate shunt" evidence=RCA

GO:0019252 "starch biosynthetic process" evidence=RCA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

GO:0019760 "glucosinolate metabolic process" evidence=RCA

GO:0043085 "positive regulation of catalytic activity" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P82658	TL19_ARATH	No assigned EC number	0.6680	0.9576	0.9868	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	236
PLN00066	262	PLN00066, PLN00066, PsbP domain-containing protein	2e-12
pfam01789	163	pfam01789, PsbP, PsbP	1e-05

>gnl|CDD|215046 PLN00066, PLN00066, PsbP domain-containing protein 4; Provisional

 Score = 64.4 bits (157), Expect = 2e-12
 Identities = 54/222 (24%), Positives = 91/222 (40%), Gaps = 30/222 (13%)

Query: 31  SLFTPTKQSLTSLLTATLATTTLLTAS--PSLAEP-AQTYHIYYGTAASAANYGGYG-GN 86
           S       ++ +     LA    L A   P L+EP    +  Y      +   GG+G G 
Sbjct: 53  SGAAAASSAVLAFPGEGLAVKQGLLAGRVPGLSEPDENGWRTYRRPEGKS---GGHGVGW 109

Query: 87  SDKKASAEYIYDVPDGWKERLVSKVEKGTNGTDSEFYNPKK----------RTEKEYLTF 136
           S+      Y + VP GW+E  VS  + G    D  F + K+              + L  
Sbjct: 110 SE---ITPYSFKVPQGWEEVPVSIADLGGTEIDLRFASDKEGRLKVVVAPVLRFADNLGD 166

Query: 137 LAGFRQLAPKDAVLNNLA--LSDVDLQDLLASADKVASEEKKDDKGQLYYVYEIDGVGSH 194
            A   ++ P + V++     L    +++      KV S E  +  G+ YY +E+     H
Sbjct: 167 NATIEEIGPPEKVISGFGPELIGEPVEE-----GKVLSMEVAEHSGRTYYQFELP---PH 218

Query: 195 SLISVTCANNKLYAHFVNAPTPEWNRDEETLRHVHESFKTVQ 236
           +L++ T A N++Y   V A   +W R  + L+ + +SF+ V 
Sbjct: 219 TLVTATAAGNRVYIFSVTANGLQWKRHYKDLKRIAKSFRVVT 260

Length = 262

>gnl|CDD|216701 pfam01789, PsbP, PsbP

 Score = 43.4 bits (103), Expect = 1e-05
 Identities = 17/65 (26%), Positives = 26/65 (40%), Gaps = 5/65 (7%)

Query: 174 EKKDDKGQLYYVYEI-----DGVGSHSLISVTCANNKLYAHFVNAPTPEWNRDEETLRHV 228
            +++  G+ YY  E      DG   H L +VT    KLY          W + ++    V
Sbjct: 97  SEREVDGKTYYDLEYLVRLADGGDRHELATVTVDRGKLYTLAAQTNEKRWFKVKKLFERV 156

Query: 229 HESFK 233
            +SF 
Sbjct: 157 VDSFS 161

This family consists of the 23 kDa subunit of oxygen evolving system of photosystem II or PsbP from various plants (where it is encoded by the nuclear genome) and Cyanobacteria. The 23 KDa PsbP protein is required for PSII to be fully operational in vivo, it increases the affinity of the water oxidation site for Cl- and provides the conditions required for high affinity binding of Ca2+. Length = 163

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	236
PLN00066	262	PsbP domain-containing protein 4; Provisional	100.0
PLN00059	286	PsbP domain-containing protein 1; Provisional	100.0
PLN00042	260	photosystem II oxygen-evolving enhancer protein 2;	100.0
PLN00067	263	PsbP domain-containing protein 6; Provisional	100.0
PF01789	175	PsbP: PsbP; InterPro: IPR002683 Oxygenic photosynt	100.0
PLN03152	241	hypothetical protein; Provisional	99.94
PF08786	130	DUF1795: Domain of unknown function (DUF1795); Int	97.82
PRK11615	185	hypothetical protein; Provisional	92.93
COG5435	147	Uncharacterized conserved protein [Function unknow	90.43
PF10738	175	Lpp-LpqN: Probable lipoprotein LpqN; InterPro: IPR	87.79

>PLN00066 PsbP domain-containing protein 4; Provisional

Probab=100.00  E-value=5.5e-47  Score=340.00  Aligned_cols=164  Identities=24%  Similarity=0.445  Sum_probs=147.5

Q ss_pred             CCCCCccceeeeccCCCcCccCCcCCcccCCCCccEEeeCCCCceecceeccccCCCCcceEEeCCCCCCceEEEEEee-
Q 026608           60 LAEPAQTYHIYYGTAASAANYGGYGGNSDKKASAEYIYDVPDGWKERLVSKVEKGTNGTDSEFYNPKKRTEKEYLTFLA-  138 (236)
Q Consensus        60 ~~~~~~~~~~y~g~~~~~~~~GG~g~~~d~~dg~~Y~y~vP~gW~ev~Vs~~e~g~~G~Dv~F~d~~~~~enVsvvi~s-  138 (236)
                      ++++++||+|||+|+++   ||||||+  |++..+|.|++|+||+|++|||+|+|++|+|++|.|+.+  +||+|+|.. 
T Consensus        85 s~~~~~g~~~~~rp~~~---~Gg~G~~--~~~i~~Y~F~yP~GW~ev~VS~~d~gg~~vd~Rf~~~~~--~nvsVvVspv  157 (262)
T PLN00066         85 SEPDENGWRTYRRPEGK---SGGHGVG--WSEITPYSFKVPQGWEEVPVSIADLGGTEIDLRFASDKE--GRLKVVVAPV  157 (262)
T ss_pred             CCccccceEEEecCccc---cCcCCCC--ccccCCeEEECCCCCeEeecccccCCCCceEEEeccCCC--ccEEEEEecc
Confidence            45678999999999988   9999999  899999999999999999999999999999999999544  456666641 


Q ss_pred             -----------cccccCChHHHHHHHHhhccccchhcccccceeeceeeecCCeeeEEEEEccCCceeEEEEEEeCCEEE
Q 026608          139 -----------GFRQLAPKDAVLNNLALSDVDLQDLLASADKVASEEKKDDKGQLYYVYEIDGVGSHSLISVTCANNKLY  207 (236)
Q Consensus       139 -----------~i~~LG~peevl~~l~~~~~~~~~~i~~a~~llsa~~r~~dGktYY~yE~~~~~rH~LasvTV~~GkLY  207 (236)
                                 +|+|||+|++|++.|..+.++.+.   ++++|+++++++.|||+||+|||   .||+|++|||++||||
T Consensus       158 ~rla~~~~~~~sI~dLGspeeVi~~l~~~v~g~~~---~e~eLl~a~~re~dGktYY~~E~---~rH~LasaTV~~GrLY  231 (262)
T PLN00066        158 LRFADNLGDNATIEEIGPPEKVISGFGPELIGEPV---EEGKVLSMEVAEHSGRTYYQFEL---PPHTLVTATAAGNRVY  231 (262)
T ss_pred             ccccccccCCCChHHcCCHHHHHHHHHHHhcCCCc---cccceeEeeeeecCCcEEEEEEE---eCceEEEEEEECCEEE
Confidence                       567999999999999887766554   35569999999999999999999   4999999999999999


Q ss_pred             EEEeecCCccchhhHHHHHHHhhcceecC
Q 026608          208 AHFVNAPTPEWNRDEETLRHVHESFKTVQ  236 (236)
Q Consensus       208 tl~v~a~ekrW~k~~~~Lr~VvdSF~V~~  236 (236)
                      +|++++||+||+|++++|++|++||+|++
T Consensus       232 t~~asape~rW~k~~~~lr~v~dSF~V~~  260 (262)
T PLN00066        232 IFSVTANGLQWKRHYKDLKRIAKSFRVVT  260 (262)
T ss_pred             EEEeecchHhhHHHHHHHHHHhhceeeec
Confidence            99999999999999999999999999975

>PLN00059 PsbP domain-containing protein 1; Provisional

Probab=100.00  E-value=1.5e-39  Score=291.23  Aligned_cols=144  Identities=20%  Similarity=0.334  Sum_probs=128.6

Q ss_pred             CcCCcccCCCCccEEeeCCCCceecceeccccCCCCcceEEeCCCCCCceEEEEEee-------cccccCChHHHHHHHH
Q 026608           82 GYGGNSDKKASAEYIYDVPDGWKERLVSKVEKGTNGTDSEFYNPKKRTEKEYLTFLA-------GFRQLAPKDAVLNNLA  154 (236)
Q Consensus        82 G~g~~~d~~dg~~Y~y~vP~gW~ev~Vs~~e~g~~G~Dv~F~d~~~~~enVsvvi~s-------~i~~LG~peevl~~l~  154 (236)
                      ||....|+.|||+|.|  |.||.++.       ..|+|++|+|+++.+|||+|+|+.       +|+|||+|++|+++|+
T Consensus       108 ~l~~y~D~~DGY~FlY--P~GWi~V~-------~~G~DVvFrD~Ie~~ENVSV~ISs~sss~~~sLeDLGsP~eVgerLl  178 (286)
T PLN00059        108 VFREYIDTFDGYSFKY--PQNWIQVR-------GAGADIFFRDPVVLDENLSVEFSSPSSSKYTSLEDLGSPEEVGKRVL  178 (286)
T ss_pred             ccceeEcCCCCeEEeC--CCCCeEec-------cCCCceEEeccCccccceEEEEecCCcccCCChHHcCCHHHHHHHHH
Confidence            5777789999999999  99999998       469999999999999999999982       6889999999999999


Q ss_pred             hhccccc-----hhcccccceeeceeeec-CCeeeEEEEEc---------------------cCCceeEEEEEEeCCEEE
Q 026608          155 LSDVDLQ-----DLLASADKVASEEKKDD-KGQLYYVYEID---------------------GVGSHSLISVTCANNKLY  207 (236)
Q Consensus       155 ~~~~~~~-----~~i~~a~~llsa~~r~~-dGktYY~yE~~---------------------~~~rH~LasvTV~~GkLY  207 (236)
                      ++.++.+     +..+ ..+|+++++|+. ||++||+|||.                     +|.||+|++|+|.|||||
T Consensus       179 kqvLa~f~str~GsgR-eaeLVsA~~Re~~DGktYY~lEY~Vks~~~~n~~~~~~qdr~~~~~w~RH~LA~v~V~nGkLY  257 (286)
T PLN00059        179 RQYLTEFMSTRLGVKR-EANILSTSSRVADDGKLYYQVEVNIKSYANNNELAVMPQDRVARLEWNRRYLAVLGVENDRLY  257 (286)
T ss_pred             HHHhcccccccCCCCc-ceEEEEeeeEEccCCcEEEEEEEEEEcCcccccccccccccccccccceeeEEEEEEeCCEEE
Confidence            8887653     3444 455999987754 99999999998                     248999999999999999


Q ss_pred             EEEeecCCccchhhHHHHHHHhhcceec
Q 026608          208 AHFVNAPTPEWNRDEETLRHVHESFKTV  235 (236)
Q Consensus       208 tl~v~a~ekrW~k~~~~Lr~VvdSF~V~  235 (236)
                      +|++|+||+||.|++++|++|++||+|.
T Consensus       258 TL~~qtpE~RW~kvk~~f~~V~dSF~V~  285 (286)
T PLN00059        258 SIRLQTPEKVFLEEEKDLRRVMDSFRVE  285 (286)
T ss_pred             EEEcCCcHHHHHHHHHHHHHHHhheeec
Confidence            9999999999999999999999999986

>PLN00042 photosystem II oxygen-evolving enhancer protein 2; Provisional

Probab=100.00  E-value=5.4e-39  Score=287.27  Aligned_cols=150  Identities=17%  Similarity=0.265  Sum_probs=125.0

Q ss_pred             CcCccCCcCCcccCCCCccEEeeCCCCceecceeccccCCCCcceEEeCCCCCCceEEEEEe----ecccccCChHHHHH
Q 026608           76 SAANYGGYGGNSDKKASAEYIYDVPDGWKERLVSKVEKGTNGTDSEFYNPKKRTEKEYLTFL----AGFRQLAPKDAVLN  151 (236)
Q Consensus        76 ~~~~~GG~g~~~d~~dg~~Y~y~vP~gW~ev~Vs~~e~g~~G~Dv~F~d~~~~~enVsvvi~----s~i~~LG~peevl~  151 (236)
                      +|-+.-||...  +.|||+|.|  |++|+++++    .+..|+|++|+|+++.+|||+|+|+    .+|+|||+||++++
T Consensus        85 ~~k~~~gF~~y--~~dgY~Fly--P~~W~~~ke----~~~~G~dv~f~D~~~~~eNVSV~Ispt~k~sI~dlGsPee~l~  156 (260)
T PLN00042         85 KPKTNTGFLPY--NGDGFKLLV--PSKWNPSKE----REFPGQVLRFEDNFDATSNLSVMVTPTDKKSITDYGSPEEFLS  156 (260)
T ss_pred             CCCCCCCCeEe--eCCCeEEec--CCCCccccc----cccCCceEEeeccccccccEEEEEecCCcCCHhhcCCHHHHHH
Confidence            44556667666  458888888  999998874    4578999999999999999999998    49999999999655


Q ss_pred             H----HHhhccccc---------hhcccccceeeceeeecCCeeeEEEEEc-------cCCceeEEEEEEeCCEEEEEEe
Q 026608          152 N----LALSDVDLQ---------DLLASADKVASEEKKDDKGQLYYVYEID-------GVGSHSLISVTCANNKLYAHFV  211 (236)
Q Consensus       152 ~----l~~~~~~~~---------~~i~~a~~llsa~~r~~dGktYY~yE~~-------~~~rH~LasvTV~~GkLYtl~v  211 (236)
                      .    |.++.+..+         +++++ .+|+++++++.||++||+|||.       +++||+||+|||+|||||+|++
T Consensus       157 ~vgylL~kq~~a~~t~s~~Gf~p~~vat-a~Lleas~re~dGk~YY~lE~~~~~ad~d~~~RH~LatatV~~GkLYtl~a  235 (260)
T PLN00042        157 KVSYLLGKQAYSGETASEGGFDANAVAT-AAVLESSTQEVGGKPYYYLSVLTRTADGDEGGKHQLITATVSDGKLYICKA  235 (260)
T ss_pred             HHHHHHHhhhccCccccccCcCcccccc-eeEEEeeeEEeCCeEEEEEEEEEecCCCCCCCceEEEEEEEECCEEEEEEe
Confidence            4    444444433         22333 3599999999999999999997       3789999999999999999999


Q ss_pred             ecCCccchhh-HHHHHHHhhccee
Q 026608          212 NAPTPEWNRD-EETLRHVHESFKT  234 (236)
Q Consensus       212 ~a~ekrW~k~-~~~Lr~VvdSF~V  234 (236)
                      |+||+||+|+ ++.|++|++||+|
T Consensus       236 qa~EkRW~K~~~k~l~~v~~SFsV  259 (260)
T PLN00042        236 QAGDKRWFKGARKFVEGAASSFSV  259 (260)
T ss_pred             cCchhhhhHHHHHHHHHHHhceec
Confidence            9999999998 7789999999997

>PLN00067 PsbP domain-containing protein 6; Provisional

Probab=100.00  E-value=7.3e-38  Score=279.73  Aligned_cols=136  Identities=22%  Similarity=0.384  Sum_probs=117.0

Q ss_pred             cEEeeCCCCceecceeccccCC--------CCcceEEeCCCCCCceEEEEEe----------ecccccCChHHHHHHHHh
Q 026608           94 EYIYDVPDGWKERLVSKVEKGT--------NGTDSEFYNPKKRTEKEYLTFL----------AGFRQLAPKDAVLNNLAL  155 (236)
Q Consensus        94 ~Y~y~vP~gW~ev~Vs~~e~g~--------~G~Dv~F~d~~~~~enVsvvi~----------s~i~~LG~peevl~~l~~  155 (236)
                      .|.|.+|+||+|++|+++..|+        .|+|++|+|+.  ++||+|+|+          .+|+|||+|++|+++|..
T Consensus       106 gY~FlyP~gW~~v~Vs~~~sGnycqp~c~~p~~dv~F~D~~--dgnVSVIVSPV~r~t~k~~~sIeDlGsPeeVl~~Lg~  183 (263)
T PLN00067        106 PYQFILPPTWKQTRVANILSGNYCQPKCAEPWVEVKFEDEK--QGKVQVVASPLIRLTNKPNATIEEIGSPEKLIASLGP  183 (263)
T ss_pred             cceEeCCCCCcCccccccccCccccccccCCCceEEEeCCC--CCCEEEEEecccccccCCCCChHHccCHHHHHHHhhH
Confidence            4555559999999999986664        35899999965  558888865          278899999999999977


Q ss_pred             hccccchhcccccceeeceeeecCCeeeEEEEEc----cCCceeEEEEEEeCCEEEEEEeecCCccchhhHHHHHHHhhc
Q 026608          156 SDVDLQDLLASADKVASEEKKDDKGQLYYVYEID----GVGSHSLISVTCANNKLYAHFVNAPTPEWNRDEETLRHVHES  231 (236)
Q Consensus       156 ~~~~~~~~i~~a~~llsa~~r~~dGktYY~yE~~----~~~rH~LasvTV~~GkLYtl~v~a~ekrW~k~~~~Lr~VvdS  231 (236)
                      ...+.  .. +.++|+++++++.||++||+|||.    +++||+|+++||++||||||++++||+||+|+++.|++|++|
T Consensus       184 ~v~g~--~~-~~~eLLeAs~re~dGktYY~~E~~tp~a~~gRHnLataTV~~GkLYtf~asanEkRW~K~k~~l~~V~dS  260 (263)
T PLN00067        184 FVTGN--SY-DPDELLETSVEKIGDQTYYKYVLETPFALTGSHNLAKATAKGNTVVLFVVSASDKQWQSSEKTLKAILDS  260 (263)
T ss_pred             HhhcC--CC-CCcceEEeeeEeeCCeEEEEEEEEecCCCCCceEEEEEEEECCEEEEEEecCCHHHHHHHHHHHHHHHHh
Confidence            76652  22 345699999999999999999999    468999999999999999999999999999999999999999


Q ss_pred             cee
Q 026608          232 FKT  234 (236)
Q Consensus       232 F~V  234 (236)
                      |+|
T Consensus       261 FsV  263 (263)
T PLN00067        261 FQA  263 (263)
T ss_pred             ccC
Confidence            986

>PF01789 PsbP: PsbP; InterPro: IPR002683 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae

Probab=100.00  E-value=2e-36  Score=255.65  Aligned_cols=162  Identities=25%  Similarity=0.465  Sum_probs=125.9

Q ss_pred             HHHHHHHhhhcccCCCCCCCCccceeeeccCCCcCccCCcCCcccCCCCccEEeeCCCCceecceeccccCCCCcceEEe
Q 026608           44 LTATLATTTLLTASPSLAEPAQTYHIYYGTAASAANYGGYGGNSDKKASAEYIYDVPDGWKERLVSKVEKGTNGTDSEFY  123 (236)
Q Consensus        44 ~~~~~~~~~~~~~~~~~~~~~~~~~~y~g~~~~~~~~GG~g~~~d~~dg~~Y~y~vP~gW~ev~Vs~~e~g~~G~Dv~F~  123 (236)
                      |++++.+++..|..    ....+|+.|..                ..++|.|.|  |+||+++.       ..|+|++|+
T Consensus         4 ~~~~~~~~~~~~~~----~~~~~~~~y~d----------------~~~~y~f~~--P~gW~~~~-------~~G~~v~f~   54 (175)
T PF01789_consen    4 LAALLSSANVACAA----EASTGFQPYTD----------------SDDGYSFLY--PSGWEEVD-------VSGADVVFR   54 (175)
T ss_dssp             ------------ST----T--SSEEEEEE----------------CTTTEEEEE--ETTEEEEE-------STTEEEEEE
T ss_pred             eEEeeccchhhhcc----cCCCCceEEEc----------------CCCCEEEEC--CCCCeecC-------CCCeEEEEE
Confidence            34444444444443    34677888873                446666666  99998887       478999999


Q ss_pred             CCCCCCceEEEEEe----e-cccccCChHHHHHHHHhhccccchhcccccceeeceeeecCCeeeEEEEEc----c-CCc
Q 026608          124 NPKKRTEKEYLTFL----A-GFRQLAPKDAVLNNLALSDVDLQDLLASADKVASEEKKDDKGQLYYVYEID----G-VGS  193 (236)
Q Consensus       124 d~~~~~enVsvvi~----s-~i~~LG~peevl~~l~~~~~~~~~~i~~a~~llsa~~r~~dGktYY~yE~~----~-~~r  193 (236)
                      |+.+..+||+|+|.    . +|++||+|++++++|+......+.... ..+|+++.+++.+|++||+|||.    + +.|
T Consensus        55 d~~~~~~nvsV~v~p~~~~~sl~~lGs~~~va~~l~~~~~~~~~~~~-~a~li~a~~~~~~g~~yY~~Ey~~~~~~~~~r  133 (175)
T PF01789_consen   55 DPIDADENVSVVVSPVPKDFSLEDLGSPEEVAERLLNGELASPGSGR-EAELISASEREVDGKTYYEYEYTVQSPNEGRR  133 (175)
T ss_dssp             ETTETTSEEEEEEEE-STS-SGGGG-SHHHHHHHHHHHCCCHCTSSE-EEEEEEEEEEEETTEEEEEEEEEEEETTEEEE
T ss_pred             CcccccceEEEEEEecCCcCchhhcCCHHHHHHHHhhhhcccccCCc-ceEEEEeeeeecCCccEEEEEEEeccCCCccc
Confidence            99999999999987    2 899999999999999887766665444 45599999999999999999998    2 579


Q ss_pred             eeEEEEEEeCCEEEEEEeecCCccchhhHHHHHHHhhcceec
Q 026608          194 HSLISVTCANNKLYAHFVNAPTPEWNRDEETLRHVHESFKTV  235 (236)
Q Consensus       194 H~LasvTV~~GkLYtl~v~a~ekrW~k~~~~Lr~VvdSF~V~  235 (236)
                      |+|+++||.|||||+|+++++|+||.|++++|++|++||+|+
T Consensus       134 h~l~~~tv~~g~lY~l~~~a~e~~w~k~~~~l~~iv~SF~v~  175 (175)
T PF01789_consen  134 HNLAVVTVKNGKLYTLTAQAPESRWDKVEPKLRKIVDSFRVY  175 (175)
T ss_dssp             EEEEEEEEETTEEEEEEEEEEHHHHHTCHHHHHHHHHC-EE-
T ss_pred             EEEEEEEEECCEEEEEEEEcCHHHHHHHHHHHHHHHhcEEeC
Confidence            999999999999999999999999999999999999999986

Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. In PSII, the oxygen-evolving complex (OEC) is responsible for catalysing the splitting of water to O(2) and 4H+. The OEC is composed of a cluster of manganese, calcium and chloride ions bound to extrinsic proteins. In cyanobacteria there are five extrinsic proteins in OEC (PsbO, PsbP-like, PsbQ-like, PsbU and PsbV), while in plants there are only three (PsbO, PsbP and PsbQ), PsbU and PsbV having been lost during the evolution of green plants []. This family represents the PSII OEC protein PsbP. Both PsbP and PsbQ (IPR008797 from INTERPRO) are regulators that are necessary for the biogenesis of optically active PSII. PsbP increases the affinity of the water oxidation site for chloride ions and provides the conditions required for high affinity binding of calcium ions [, ]. The crystal structure of PsbP from Nicotiana tabacum (Common tobacco) revealed a two-domain structure, where domain 1 may play a role in the ion retention activity in PSII, the N-terminal residues being essential for calcium and chloride ion retention activity []. PsbP is encoded in the nuclear genome in plants.; GO: 0005509 calcium ion binding, 0015979 photosynthesis, 0009523 photosystem II, 0009654 oxygen evolving complex, 0019898 extrinsic to membrane; PDB: 2VU4_A 1V2B_A 2LNJ_A 2XB3_A.

>PLN03152 hypothetical protein; Provisional

Probab=99.94  E-value=1e-25  Score=197.80  Aligned_cols=136  Identities=15%  Similarity=0.238  Sum_probs=102.5

Q ss_pred             ccEEeeCCCCceecc---eeccccCCCC-------cceEEeCCCCCCceEEEEEee------------cccccCChHHHH
Q 026608           93 AEYIYDVPDGWKERL---VSKVEKGTNG-------TDSEFYNPKKRTEKEYLTFLA------------GFRQLAPKDAVL  150 (236)
Q Consensus        93 ~~Y~y~vP~gW~ev~---Vs~~e~g~~G-------~Dv~F~d~~~~~enVsvvi~s------------~i~~LG~peevl  150 (236)
                      -.|...||..+..+-   --++-..-+|       --+||.. -+++|||+|+|..            .|.+||+++||+
T Consensus        84 ~gf~~~~pp~f~di~e~~~~~~g~~~yg~~akp~~~~aRf~s-~D~sEnVSVVIspv~~LK~tfle~kDLtDLGsp~EVg  162 (241)
T PLN03152         84 DGFSIRVPPSFEDIMEPEDYNAGLSLYGDKAKPRTFAARFAS-PDGSEVLSVVIRPSNQLKITFLEAKDITDLGSLKEAA  162 (241)
T ss_pred             CceEEeCCCChhhhcChhhcccccceecCCCCCcceeeeecC-CCCCceEEEEEecCccccccccccCChhHcCCHHHHH
Confidence            348888899997552   0111111222       2578854 4778999999872            577999999999


Q ss_pred             HHHHhhccccchhcccccceeeceeeecCCeeeEEEEEccCCceeEEEEEEeCCEEEEEEeecCCccchhhHHHHHHHhh
Q 026608          151 NNLALSDVDLQDLLASADKVASEEKKDDKGQLYYVYEIDGVGSHSLISVTCANNKLYAHFVNAPTPEWNRDEETLRHVHE  230 (236)
Q Consensus       151 ~~l~~~~~~~~~~i~~a~~llsa~~r~~dGktYY~yE~~~~~rH~LasvTV~~GkLYtl~v~a~ekrW~k~~~~Lr~Vvd  230 (236)
                      +.++     ++++..-.+..+..+ ++.|||+||+|||.-.+||+|++|+|++||||+|.++++|+||.|++++|+++++
T Consensus       163 kv~v-----P~g~~~~saR~iel~-~E~dGKtYY~lEy~v~~RH~LaTVaVsrGKLYTl~aSt~EkRW~Kvk~kfr~aa~  236 (241)
T PLN03152        163 KIFV-----PGGATLYSARTIKVK-EEEGIRTYYFYEFGRDEQHVALVATVNSGKAYIAGATAPESKWDDDGVKLRSAAI  236 (241)
T ss_pred             HhhC-----CCcccccccceeeee-eecCCceeEEEEEEeCCcEEEEEEEEcCCeEEEEecCCchhchHHHHHHHHHHHh
Confidence            6654     333211011133333 5899999999999976999999999999999999999999999999999999999


Q ss_pred             cceec
Q 026608          231 SFKTV  235 (236)
Q Consensus       231 SF~V~  235 (236)
                      ||+|+
T Consensus       237 SFsV~  241 (241)
T PLN03152        237 SLTVL  241 (241)
T ss_pred             heeeC
Confidence            99985

>PF08786 DUF1795: Domain of unknown function (DUF1795); InterPro: IPR014894 This is a bacterial protein of unknown function

Probab=97.82  E-value=0.00068  Score=54.24  Aligned_cols=122  Identities=13%  Similarity=0.137  Sum_probs=73.7

Q ss_pred             EeeCCCCceecceeccccCCCCcceEEeCCCCCCceEEEEEe-ecccccCChHHHHHHHHhhccccchhcccccceeece
Q 026608           96 IYDVPDGWKERLVSKVEKGTNGTDSEFYNPKKRTEKEYLTFL-AGFRQLAPKDAVLNNLALSDVDLQDLLASADKVASEE  174 (236)
Q Consensus        96 ~y~vP~gW~ev~Vs~~e~g~~G~Dv~F~d~~~~~enVsvvi~-s~i~~LG~peevl~~l~~~~~~~~~~i~~a~~llsa~  174 (236)
                      .|.+|.+|+...++.         +++.|+...  ..+++|+ ..+.+=.+.++.+++.....   ...+..-. +++.+
T Consensus         3 ~~~lP~~~~D~t~nv---------~~~~~~~~~--~~slvIsR~~l~~g~tl~~~~~~q~~~l---~~~l~~~~-~~~~~   67 (130)
T PF08786_consen    3 SLTLPDGWQDRTMNV---------LVLPDSGGS--GPSLVISRDPLPDGETLEDYLQRQLAQL---RKQLPGFQ-LVERQ   67 (130)
T ss_dssp             EEEEETTSEE--BEE---------EEE--BTTB---EEEEEEEE---TTS-HHHHHHHHHHHH---HCCSTT-E-EEEEE
T ss_pred             eEeCCCcceeceEEE---------EEccCCCCC--cceEEEEeccCCCCCCHHHHHHHHHHHH---HhhCCCcE-EEeeE
Confidence            456699999987642         344444333  3444554 34433345555555543221   11111111 44555


Q ss_pred             eeecCCeeeEEEEEc----cCCceeEEEEEEeC-CEEEEEEeecCCccchhhHHHHHHHhhcc
Q 026608          175 KKDDKGQLYYVYEID----GVGSHSLISVTCAN-NKLYAHFVNAPTPEWNRDEETLRHVHESF  232 (236)
Q Consensus       175 ~r~~dGktYY~yE~~----~~~rH~LasvTV~~-GkLYtl~v~a~ekrW~k~~~~Lr~VvdSF  232 (236)
                      ....+|+.-+.+|+.    +..-|+...+...+ +++|+|..+++.......++.+..|++||
T Consensus        68 ~~~l~~~~a~~l~~~~~~~g~~v~Q~q~~~~~~~~~~l~~T~t~~~~~~~~~~~~~~~i~~Sf  130 (130)
T PF08786_consen   68 PITLGGRPARELEYSFRSGGQPVYQRQAAVLLPGRRVLVFTYTAPGPFTEEQRAHWEAILKSF  130 (130)
T ss_dssp             EEEETTEEEEEEEEEEEETTCEEEEEEEEEEEC-CCEEEEEEEEECCCHHHHHHHHHHHHCT-
T ss_pred             EEEeCCCCeEEEEEEEeeCCEEEEEEEEEEEECCCEEEEEEEEcCCCCCHHHHHHHHHHHhcC
Confidence            566788877777777    33468888888777 99999999999999999999999999998

It forms an antiparallel beta sheet structure and contains some alpha helical regions. ; PDB: 1TU1_A 3LYD_A.

>PRK11615 hypothetical protein; Provisional

Probab=92.93  E-value=3.7  Score=36.01  Aligned_cols=130  Identities=15%  Similarity=0.163  Sum_probs=79.4

Q ss_pred             cEEeeCCCCceecceeccccCCCCc-ceEEeCCCCCCceEEEEEeecccccCChHHHHHHHHhhccccchhccccc-cee
Q 026608           94 EYIYDVPDGWKERLVSKVEKGTNGT-DSEFYNPKKRTEKEYLTFLAGFRQLAPKDAVLNNLALSDVDLQDLLASAD-KVA  171 (236)
Q Consensus        94 ~Y~y~vP~gW~ev~Vs~~e~g~~G~-Dv~F~d~~~~~enVsvvi~s~i~~LG~peevl~~l~~~~~~~~~~i~~a~-~ll  171 (236)
                      .+.|.+|.|+.+..- |  .|+.+. =-+|-|+  .++++.++|..+     ++.+.|+.|+.....-| .-+.++ .++
T Consensus        49 Kl~FtLPag~sdqsg-k--~Gtq~nn~~vYad~--tg~kavIVi~gD-----~~~~~Ld~la~rl~~qQ-r~rdp~lqvv  117 (185)
T PRK11615         49 KLSFTLPADMSDQSG-K--LGTQANNMHVYADA--TGQKAVIVILGD-----DTNEDLAVLAKRLEDQQ-RSRDPQLQVV  117 (185)
T ss_pred             EEEEEcCCccccccc-c--ccccccceEEEEcC--CCCEEEEEEeCC-----CChhhHHHHHHHHHHHH-HhhCcCceee
Confidence            688888999986641 1  234443 3567773  334554444321     23344454432221111 111111 023


Q ss_pred             eceeeecCCeeeEEEEEc---cC-CceeEEEEEEeCCEEEEEEeecCCccchhhHHHHHHHhhccee
Q 026608          172 SEEKKDDKGQLYYVYEID---GV-GSHSLISVTCANNKLYAHFVNAPTPEWNRDEETLRHVHESFKT  234 (236)
Q Consensus       172 sa~~r~~dGktYY~yE~~---~~-~rH~LasvTV~~GkLYtl~v~a~ekrW~k~~~~Lr~VvdSF~V  234 (236)
                      ..+.-+.+|+.++.++-.   ++ -.-+=+.++..++||-++.+..|.+-=.+.+..-++|+++..+
T Consensus       118 snK~i~i~G~~~qQLDS~~t~~Gqk~~SSvvL~~v~~rl~tlQitlpA~nqqqaq~~ae~ii~tl~~  184 (185)
T PRK11615        118 TNKAIELKGHKLQQLDSIISAKGQTAYSSVVLGKVDNQLLTMQITLPADNQQQAQTTAENIINTLVI  184 (185)
T ss_pred             cceeEEECCeeeEEeeeeeecCCceEEEEEEEEeeCCeEEEEEEecCCCCHHHHHHHHHHHHhheec
Confidence            334456799999999987   22 2234566777899999999999999888889999999887654

>COG5435 Uncharacterized conserved protein [Function unknown]

Probab=90.43  E-value=4.8  Score=34.19  Aligned_cols=124  Identities=12%  Similarity=0.149  Sum_probs=69.3

Q ss_pred             EeeCCCCceecceeccccCCCCcceEEeCCCCCCceEEEEEee-cccccCChHHHHHHHHhhccccchhcccccceeece
Q 026608           96 IYDVPDGWKERLVSKVEKGTNGTDSEFYNPKKRTEKEYLTFLA-GFRQLAPKDAVLNNLALSDVDLQDLLASADKVASEE  174 (236)
Q Consensus        96 ~y~vP~gW~ev~Vs~~e~g~~G~Dv~F~d~~~~~enVsvvi~s-~i~~LG~peevl~~l~~~~~~~~~~i~~a~~llsa~  174 (236)
                      .+++|+.|+...|+.           |.....+..-.+++|+= .++.=-+-.+..++.+..   +.+++..-+ ++.-.
T Consensus        10 ~l~lP~~w~DrSvNv-----------f~~~~~gt~~~sfvIsRd~~~~g~~~~~y~~rql~~---l~k~Lpgy~-~~~~~   74 (147)
T COG5435          10 TLELPAAWQDRSVNV-----------FVSGDNGTSGFSFVISRDPLEPGDTFPEYVQRQLAL---LRKQLPGYE-LHHRR   74 (147)
T ss_pred             eEcCcchhccceEEE-----------EEecCCCcceeEEEEecCCCCCCCcHHHHHHHHHHH---HHhhCCCeE-Eeecc
Confidence            578899999888754           33333334445556652 222111112222222111   122221111 22222


Q ss_pred             eeecCCe----eeEEEEEc--cCCc-eeEEEEEEeCCEEEEEEeecCCccchhhHHHHHHHhhccee
Q 026608          175 KKDDKGQ----LYYVYEID--GVGS-HSLISVTCANNKLYAHFVNAPTPEWNRDEETLRHVHESFKT  234 (236)
Q Consensus       175 ~r~~dGk----tYY~yE~~--~~~r-H~LasvTV~~GkLYtl~v~a~ekrW~k~~~~Lr~VvdSF~V  234 (236)
                      +-+.+|.    .+|.+-+.  ++++ |++.++.-.++++-+|..+++..-=++.|+....++.||..
T Consensus        75 e~~v~~~aa~~~~y~w~~~~~~~r~v~q~~~~i~~g~~vLifT~Tt~~~ftp~q~~~~~~~I~Sf~p  141 (147)
T COG5435          75 EIEVGGAAAPLLDYQWTSPEGEQRRVQQRQVFIERGDTVLIFTLTTPGEFTPSQKKAWEQVIQSFVP  141 (147)
T ss_pred             ccccCccccceeEEEeecCCCCCceEEEEEeecccCCeEEEEEecCCCCCCHHHHHHHHHHHHhcCC
Confidence            3445554    56666663  4444 45555555668899999999888777889999999999974

>PF10738 Lpp-LpqN: Probable lipoprotein LpqN; InterPro: IPR019674 This protein is conserved in Mycobacteriaceae and is likely to be a lipoprotein []

Probab=87.79  E-value=7.5  Score=33.60  Aligned_cols=134  Identities=13%  Similarity=0.073  Sum_probs=68.7

Q ss_pred             CccEEeeCCCCceecceeccccCCCCcc-eEEeCCCCCC--ceEEEEEeecccccCChHHHHHHHHhhccccchhccccc
Q 026608           92 SAEYIYDVPDGWKERLVSKVEKGTNGTD-SEFYNPKKRT--EKEYLTFLAGFRQLAPKDAVLNNLALSDVDLQDLLASAD  168 (236)
Q Consensus        92 g~~Y~y~vP~gW~ev~Vs~~e~g~~G~D-v~F~d~~~~~--enVsvvi~s~i~~LG~peevl~~l~~~~~~~~~~i~~a~  168 (236)
                      .-.-.+-+|.||....-.+++   .... +.... .++.  -|+.|++.+=..+| +|+++++.--.+.-.+++.-    
T Consensus        30 ~p~v~lP~P~GW~~~~~~~~~---~a~~vi~~~~-~~~~~~Pnavv~V~kL~G~~-Dp~e~l~~a~~d~~~l~g~~----  100 (175)
T PF10738_consen   30 APTVSLPTPPGWEPAPDPNPP---WAYAVIVDPQ-ADGGFPPNAVVTVSKLTGDF-DPAEALEHAPADAQNLPGFR----  100 (175)
T ss_pred             CCEEeccCCcCcccCCCCCCC---ceEEEEEecc-ccCCCCCceEEEEEeccCCC-CHHHHHHhchhhHhhCcCcc----
Confidence            345667779999987622211   1112 12222 2222  36655444322345 47777764322222233221    


Q ss_pred             ceeeceeeecCCeeeEEEE----EccCCce--eEEEEEEeCCEEEE--EEeecCCccchhhHHHHHHHhhcceec
Q 026608          169 KVASEEKKDDKGQLYYVYE----IDGVGSH--SLISVTCANNKLYA--HFVNAPTPEWNRDEETLRHVHESFKTV  235 (236)
Q Consensus       169 ~llsa~~r~~dGktYY~yE----~~~~~rH--~LasvTV~~GkLYt--l~v~a~ekrW~k~~~~Lr~VvdSF~V~  235 (236)
                       -++.+.-+-+|-.=+.+|    ..+..+|  +..+|...++..|.  |++++.+.+=...-+....|.+.|+|-
T Consensus       101 -~~~~s~~~~~GfpS~~i~GtY~~~g~~~~~~~r~VV~~~~~~~Ylvqltvt~~~~qa~~~~~a~~aI~~g~~It  174 (175)
T PF10738_consen  101 -ELDGSPSDFSGFPSSQIEGTYDKDGMRLHTSQRTVVIPGDDQRYLVQLTVTTTADQAVALADATEAIDEGFTIT  174 (175)
T ss_pred             -cccCCccccCCCceeEEEEEEeeCCEEeEeEEEEEEEeCCCcEEEEEEEeeccccchhhhhhHHHHHHcCCEec
Confidence             123333344454444433    2222233  34444445666665  556667777777789999999999985

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	236
2lnj_A	170	SLL1418 protein, putative uncharacterized protein	5e-24
2xb3_A	165	PSBP protein; photosynthesis, zinc-binding, photos	4e-17
2vu4_A	273	Oxygen-evolving enhancer protein 2; kDa protein, t	9e-16
1v2b_A	177	23-kDa polypeptide of photosystem II oxygen- evolv	9e-12
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-04

>2lnj_A SLL1418 protein, putative uncharacterized protein SLL1418; cyanop, photosystem II, PSBP, photosynthesis; NMR {Synechocystis SP} Length = 170

 Score = 93.4 bits (231), Expect = 5e-24
 Identities = 37/171 (21%), Positives = 56/171 (32%), Gaps = 16/171 (9%)

Query: 73  TAASAANYGGYGGNSDKKASAEYIYDVPDGWKERLVSKVEKGTNGTDSEFYNPKKRTEKE 132
            +            SD K    Y +  P+GW       V+  + G D  F +  +R E  
Sbjct: 4   GSCGGVGIASLQRYSDTKDG--YEFLYPNGWIG---VDVKGASPGVDVVFRDLIERDENL 58

Query: 133 YLTF-----LAGFRQLAPKDAVLNNLALSDVDLQDLLASADKVASEEKKDDKGQLYYVYE 187
            +             L     V      +  D       A+ + +E + +D GQ+YY  E
Sbjct: 59  SVIISEIPSDKTLTDLGTATDVGYRFMKTVNDASQGDRQAELINAEARDED-GQVYYTLE 117

Query: 188 I-----DGVGSHSLISVTCANNKLYAHFVNAPTPEWNRDEETLRHVHESFK 233
                 D V  H L SVT    KL    ++     W+  +     V  SF 
Sbjct: 118 YRVLVGDNVERHDLASVTTNRGKLITFDLSTAEDRWDTVKSLFDTVASSFH 168

>2xb3_A PSBP protein; photosynthesis, zinc-binding, photosystem; 2.80A {Thermosynechococcus elongatus} Length = 165

 Score = 75.3 bits (184), Expect = 4e-17
 Identities = 32/171 (18%), Positives = 63/171 (36%), Gaps = 23/171 (13%)

Query: 77  AANYGGYGGNSDKKASAEYIYDVPDGWKERLVSKVEKGTNGTDSEFYNPKKRTEKEYLTF 136
           ++   G     D      Y +  P GW +       +  +  D  F++  + TE   +  
Sbjct: 2   SSATSGLQAYVDSYDG--YEFLYPRGWVQV------QVEDPVDVVFHDIIETTENVSVVV 53

Query: 137 -----LAGFRQLAPKDAVLNNLALSDVDLQDLLASADKVASEEKKDDKGQLYYVYE---- 187
                     +L   + V + L  + +   +   S+  +A+  +K D  + YY+ E    
Sbjct: 54  NTVASTKSLEELGSPEEVGDRLLRNIIAPSESGRSSALIAATSQKAD-DKTYYILEYAVT 112

Query: 188 -----IDGVGSHSLISVTCANNKLYAHFVNAPTPEWNRDEETLRHVHESFK 233
                      H+L S+  +  K+Y   V+AP   W + E+  + +  SF 
Sbjct: 113 LPGDGNTAQQRHNLSSIAVSRGKVYTLSVSAPEERWPKVEDQFKTIVSSFT 163

>1v2b_A 23-kDa polypeptide of photosystem II oxygen- evolving complex; alpha-beta, riken structural genomics/proteomics initiative, RSGI; HET: GLC; 1.60A {Nicotiana tabacum} SCOP: d.107.1.2 Length = 177

 Score = 60.7 bits (146), Expect = 9e-12
 Identities = 33/187 (17%), Positives = 58/187 (31%), Gaps = 37/187 (19%)

Query: 72  GTAASAANYGGYGGNSDKKASAEYIYDVPDGWKERLVSKVEKGTNGTDSEFYNPKKRTE- 130
           G   +  ++  Y G+        +   +P  W        E    G    F +    T  
Sbjct: 1   GKPKTDTDFQTYNGD-------GFKLQIPSKW----NPNKEVEYPGQVLRFEDNFDATSN 49

Query: 131 ---------KEYLT-------FLAGFRQLAPKDAVLNNLALSDVDLQDLLASADKVASEE 174
                    K+ +T       FL+    L  + A             D +A A+ + +  
Sbjct: 50  VIVAITPTDKKSITDFGSPEQFLSQVDYLLGRQAYSGKTDSEGGFESDAVAIANVLETST 109

Query: 175 KKDDKGQLYYVYEI-------DGVGSHSLISVTCANNKLYAHFVNAPTPEWNRDEET-LR 226
            +   G+ YY   I       +  G H L++ T  + KLY     A    W +  +  + 
Sbjct: 110 AEVG-GKQYYYLSILTRTADGNEGGKHQLVTATVNDGKLYICKAQAGDKRWFKGAKKFVE 168

Query: 227 HVHESFK 233
           +   SF 
Sbjct: 169 NTATSFS 175

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 39.5 bits (91), Expect = 8e-04
 Identities = 36/219 (16%), Positives = 62/219 (28%), Gaps = 58/219 (26%)

Query: 21  CKTPTKPPHSSLFTPTKQSLTSLLTATLATTTLLTASPSLAEPAQTYHIYYGTAASAANY 80
           CK         L T   + +T  L+A   T   L        P +   +         + 
Sbjct: 266 CKI--------LLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLL----LKYLDC 313

Query: 81  GGYGGNSD-----KKAS-------AEYIYDVP---DGWKERLVSKVEKGTNGTDSEFYNP 125
                  D        +       AE I D     D WK     K+            N 
Sbjct: 314 R----PQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTT----IIESSLNV 365

Query: 126 KKRTE-KEYLTFLAGFRQLA--PKDA-----VLNNL--ALSDVDLQDLLASADKVASEEK 175
            +  E ++       F +L+  P  A     +L+ +   +   D+  ++    K  S  +
Sbjct: 366 LEPAEYRKM------FDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHK-YSLVE 418

Query: 176 KDDKGQLYYVYEIDGVGSHSLISVTCANNK-LYAHFVNA 213
           K  K     +  I     +  + V   N   L+   V+ 
Sbjct: 419 KQPKESTISIPSI-----YLELKVKLENEYALHRSIVDH 452

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	236
1v2b_A	177	23-kDa polypeptide of photosystem II oxygen- evolv	100.0
2xb3_A	165	PSBP protein; photosynthesis, zinc-binding, photos	100.0
2lnj_A	170	SLL1418 protein, putative uncharacterized protein	100.0
1tu1_A	148	Hypothetical protein PA0094; structural genomics,	97.92
3lyd_A	161	Uncharacterized protein; PSI-2, MCSG, GEBA, genomi	96.29

>1v2b_A 23-kDa polypeptide of photosystem II oxygen- evolving complex; alpha-beta, riken structural genomics/proteomics initiative, RSGI; HET: GLC; 1.60A {Nicotiana tabacum} SCOP: d.107.1.2

Probab=100.00  E-value=1.2e-35  Score=252.23  Aligned_cols=139  Identities=17%  Similarity=0.271  Sum_probs=114.0

Q ss_pred             CCCccEEeeCCCCceecceeccccCCCCcceEEeCCCCCCceEEEEEee----cccccCChHHHHHHH----Hhhcccc-
Q 026608           90 KASAEYIYDVPDGWKERLVSKVEKGTNGTDSEFYNPKKRTEKEYLTFLA----GFRQLAPKDAVLNNL----ALSDVDL-  160 (236)
Q Consensus        90 ~dg~~Y~y~vP~gW~ev~Vs~~e~g~~G~Dv~F~d~~~~~enVsvvi~s----~i~~LG~peevl~~l----~~~~~~~-  160 (236)
                      .|+|.|.|  |++|+++++.    +..|+|++|+|+++..+||+|+|..    +|++||+|+++++.+    ..+.+.. 
T Consensus        14 ~~gysf~y--P~~W~~~~~~----~~~G~~~~f~d~~~~~~nvsV~v~p~~~~si~dlGspe~~~~~v~~~l~~~~~~~~   87 (177)
T 1v2b_A           14 GDGFKLQI--PSKWNPNKEV----EYPGQVLRFEDNFDATSNVIVAITPTDKKSITDFGSPEQFLSQVDYLLGRQAYSGK   87 (177)
T ss_dssp             CSSEEEEE--ETTCEECCCC----CSTTEEEEEEETTEEEEEEEEEEEECSCSSGGGGCSHHHHHHHTGGGC--------
T ss_pred             cCCEEEEc--CCCCcccccc----cCCCceEEEeCCcCCCccEEEEEeCCCCCChhHCCCHHHHHHHHHHHHHHHhhccc
Confidence            46777777  9999998754    3679999999999999999999874    999999999975554    3332322 


Q ss_pred             --------chhcccccceeeceeeecCCeeeEEEEEc----c---CCceeEEEEEEeCCEEEEEEeecCCccchhh-HHH
Q 026608          161 --------QDLLASADKVASEEKKDDKGQLYYVYEID----G---VGSHSLISVTCANNKLYAHFVNAPTPEWNRD-EET  224 (236)
Q Consensus       161 --------~~~i~~a~~llsa~~r~~dGktYY~yE~~----~---~~rH~LasvTV~~GkLYtl~v~a~ekrW~k~-~~~  224 (236)
                              +++++ ..+|+++++++.||++||+|||.    +   ++||+|+++||+|||||+|++|++|+||.|+ ++.
T Consensus        88 ~~~~~gf~~~~~~-~a~ll~a~~r~~~G~~YY~~E~~~~~~~g~e~~rH~l~~~tv~~gkLY~l~~~a~e~~W~k~~~~~  166 (177)
T 1v2b_A           88 TDSEGGFESDAVA-IANVLETSTAEVGGKQYYYLSILTRTADGNEGGKHQLVTATVNDGKLYICKAQAGDKRWFKGAKKF  166 (177)
T ss_dssp             ----------CCC-EEEEEEEEEEEETTEEEEEEEEEEEC-----CCEEEEEEEEEETTEEEEEEEEEEGGGCSTTTTHH
T ss_pred             ccccCCcccCccc-ceEEEEeEEEEeCCeEEEEEEEEEecCCCCccccEEEEEEEEECCEEEEEEEecCHHHhhhhHHHH
Confidence                    23334 34599999999999999999998    2   6899999999999999999999999999996 999


Q ss_pred             HHHHhhcceec
Q 026608          225 LRHVHESFKTV  235 (236)
Q Consensus       225 Lr~VvdSF~V~  235 (236)
                      |++|++||+|.
T Consensus       167 l~~v~~SF~v~  177 (177)
T 1v2b_A          167 VENTATSFSLA  177 (177)
T ss_dssp             HHHHHHTCEEC
T ss_pred             HHHHHhheecC
Confidence            99999999983

>2xb3_A PSBP protein; photosynthesis, zinc-binding, photosystem; 2.80A {Thermosynechococcus elongatus}

Probab=100.00  E-value=2.7e-34  Score=238.34  Aligned_cols=147  Identities=22%  Similarity=0.386  Sum_probs=127.6

Q ss_pred             cCCcCCcccCCCCccEEeeCCCCceecceeccccCCCCcceEEeCCCCCCceEEEEEe-----ecccccCChHHHHHHHH
Q 026608           80 YGGYGGNSDKKASAEYIYDVPDGWKERLVSKVEKGTNGTDSEFYNPKKRTEKEYLTFL-----AGFRQLAPKDAVLNNLA  154 (236)
Q Consensus        80 ~GG~g~~~d~~dg~~Y~y~vP~gW~ev~Vs~~e~g~~G~Dv~F~d~~~~~enVsvvi~-----s~i~~LG~peevl~~l~  154 (236)
                      .+||..+.|..++|.|.|  |++|+++.++      +|+|++|+|+++..+||+|+|.     .+|++||+|++++++|+
T Consensus         5 ~~g~~~~~D~~~gysf~~--P~~W~~~~~~------~g~~v~f~d~~~~~~~v~V~v~p~~~~~~l~~~G~~e~va~~l~   76 (165)
T 2xb3_A            5 TSGLQAYVDSYDGYEFLY--PRGWVQVQVE------DPVDVVFHDIIETTENVSVVVNTVASTKSLEELGSPEEVGDRLL   76 (165)
T ss_dssp             -CCEEEEEETTTTEEEEE--ETTEEEECCC------TTEEEEEEESSCTTSEEEEEEEECSSCCCSGGGCCHHHHHHHHH
T ss_pred             CCCceEEEcCCCCEEEEc--CCCCeEecCC------CCceEEEECcccCCceEEEEEecCCCCCChHHcCCHHHHHHHHH
Confidence            456777777778877766  9999998742      3899999999999999999886     36889999999999998


Q ss_pred             hhccccchhcccccceeeceeeecCCeeeEEEEEc----c-----CCceeEEEEEEeCCEEEEEEeecCCccchhhHHHH
Q 026608          155 LSDVDLQDLLASADKVASEEKKDDKGQLYYVYEID----G-----VGSHSLISVTCANNKLYAHFVNAPTPEWNRDEETL  225 (236)
Q Consensus       155 ~~~~~~~~~i~~a~~llsa~~r~~dGktYY~yE~~----~-----~~rH~LasvTV~~GkLYtl~v~a~ekrW~k~~~~L  225 (236)
                      .+.+..++.... .+|+++..++.+|++||+|||.    .     +.||+|++++|.+||||+|++++||+||.++++.|
T Consensus        77 ~~~~~~~~~~~~-~~l~~a~~r~~~G~~yY~~Ey~~~~~~~~~~~~~rh~l~~~~v~~g~lY~l~~sape~~w~~~~~~l  155 (165)
T 2xb3_A           77 RNIIAPSESGRS-SALIAATSQKADDKTYYILEYAVTLPGDGNTAQQRHNLSSIAVSRGKVYTLSVSAPEERWPKVEDQF  155 (165)
T ss_dssp             HHTTSCTTSSCE-EEEEEEEEEEETTEEEEEEEEEEECC-----CCEEEEEEEEEEETTEEEEEEEEEEGGGHHHHHHHH
T ss_pred             HHhhcCCCCCcc-eEEEEeeeeecCCceEEEEEEEEecCCCccCccccEEEEEEEEECCEEEEEEEecCHHHhHHHHHHH
Confidence            777766665553 4599999899999999999998    3     67999999999999999999999999999999999


Q ss_pred             HHHhhcceec
Q 026608          226 RHVHESFKTV  235 (236)
Q Consensus       226 r~VvdSF~V~  235 (236)
                      ++|++||+|+
T Consensus       156 ~~v~~SF~v~  165 (165)
T 2xb3_A          156 KTIVSSFTVY  165 (165)
T ss_dssp             HHHHHTCEEC
T ss_pred             HHHHhhEEeC
Confidence            9999999986

>2lnj_A SLL1418 protein, putative uncharacterized protein SLL1418; cyanop, photosystem II, PSBP, photosynthesis; NMR {Synechocystis SP}

Probab=100.00  E-value=3e-35  Score=246.51  Aligned_cols=142  Identities=25%  Similarity=0.384  Sum_probs=124.6

Q ss_pred             cCCCCccEEeeCCCCceecceeccccCCCCcceEEeCCCCCCceEEEEEe-----ecccccCChHHHHHHHHhhccccch
Q 026608           88 DKKASAEYIYDVPDGWKERLVSKVEKGTNGTDSEFYNPKKRTEKEYLTFL-----AGFRQLAPKDAVLNNLALSDVDLQD  162 (236)
Q Consensus        88 d~~dg~~Y~y~vP~gW~ev~Vs~~e~g~~G~Dv~F~d~~~~~enVsvvi~-----s~i~~LG~peevl~~l~~~~~~~~~  162 (236)
                      |..|+|.|.|  |+||+++.+++   +.+|+|++|+|+++..+||+|+|.     .+|++||+|++++++|....+..++
T Consensus        19 d~~~gy~f~~--P~gW~~~~~~~---~~~g~~v~f~d~~~~~~nvsV~v~p~~~~~si~d~G~pe~va~~l~~~~~~~~~   93 (170)
T 2lnj_A           19 DTKDGYEFLY--PNGWIGVDVKG---ASPGVDVVFRDLIERDENLSVIISEIPSDKTLTDLGTATDVGYRFMKTVNDASQ   93 (170)
Confidence            5557766666  99999987643   356999999999999999999876     3688999999999999877776666


Q ss_pred             hcccccceeeceeeecCCeeeEEEEEc-----cCCceeEEEEEEeCCEEEEEEeecCCccchhhHHHHHHHhhcceec
Q 026608          163 LLASADKVASEEKKDDKGQLYYVYEID-----GVGSHSLISVTCANNKLYAHFVNAPTPEWNRDEETLRHVHESFKTV  235 (236)
Q Consensus       163 ~i~~a~~llsa~~r~~dGktYY~yE~~-----~~~rH~LasvTV~~GkLYtl~v~a~ekrW~k~~~~Lr~VvdSF~V~  235 (236)
                      ..+.+ +|+++.+++.||++||+|||.     ++.||+|++++|.+||||+|++++||+||.+.++.|++|++||+|+
T Consensus        94 ~~~~a-~li~a~~~~~~G~~yY~~Ey~~~~~~~~~rh~l~~~~v~~gklY~l~~~ape~~w~~~~~~l~~v~~SF~v~  170 (170)
T 2lnj_A           94 GDRQA-ELINAEARDEDGQVYYTLEYRVLVGDNVERHDLASVTTNRGKLITFDLSTAEDRWDTVKSLFDTVASSFHVY  170 (170)
Confidence            66644 489998899999999999999     5679999999999999999999999999999999999999999986

>1tu1_A Hypothetical protein PA0094; structural genomics, PSI, PROT structure initiative, midwest center for structural genomic unknown function; 1.95A {Pseudomonas aeruginosa} SCOP: d.107.1.3

Probab=97.92  E-value=0.00021  Score=57.77  Aligned_cols=126  Identities=10%  Similarity=0.131  Sum_probs=77.5

Q ss_pred             ccEEeeCCCCceecceeccccCCCCcceEEeCCCCCCc-eEEEEEe-ecccccCChHHHHHHHHhhc-cccchhcccccc
Q 026608           93 AEYIYDVPDGWKERLVSKVEKGTNGTDSEFYNPKKRTE-KEYLTFL-AGFRQLAPKDAVLNNLALSD-VDLQDLLASADK  169 (236)
Q Consensus        93 ~~Y~y~vP~gW~ev~Vs~~e~g~~G~Dv~F~d~~~~~e-nVsvvi~-s~i~~LG~peevl~~l~~~~-~~~~~~i~~a~~  169 (236)
                      .++.+.+|.||+...+          -+ |..+.++.. ..+++|. ..+.+=.+.++.+++-+... -.+++--     
T Consensus         9 ~Egsl~lP~gw~D~t~----------nv-~~~~~~~~~g~~~lvIsR~~~~~~~~l~~~~~~q~~~l~~~l~~y~-----   72 (148)
T 1tu1_A            9 HEADLEIPDAWQDQSI----------NI-FKLPASGPAREASFVISRDASQGDAPFADYVARQLENAEKQLPGFK-----   72 (148)
T ss_dssp             SSEEEEEETTSEECCB----------EE-EEECCBTTBCCEEEEEEEECCCTTSCHHHHHHHHHHHHHHHSTTCE-----
T ss_pred             CCEEEeCCCCcEeeeE----------EE-EEcCCCCCCCceEEEEEeccCCCCCCHHHHHHHHHHHHHhhCcCcE-----
Confidence            4688999999995543          22 333322211 0344554 33433234444443321110 0112111     


Q ss_pred             eeeceeeecCCeeeEEEEEc----cCCceeEEEEEEeCCEEEEEEeecCCccchhhHHHHHHHhhccee
Q 026608          170 VASEEKKDDKGQLYYVYEID----GVGSHSLISVTCANNKLYAHFVNAPTPEWNRDEETLRHVHESFKT  234 (236)
Q Consensus       170 llsa~~r~~dGktYY~yE~~----~~~rH~LasvTV~~GkLYtl~v~a~ekrW~k~~~~Lr~VvdSF~V  234 (236)
                      ++.......+|..--.+|+.    +...|+.-.+.+..+++|+|..+++..-|...++.++.|++||+.
T Consensus        73 ~~~~~~~~l~g~~a~~~e~~~~~~g~~~~Q~q~~~~~~~~~l~~t~t~~~~~~~~~~~~~~~i~~Sf~~  141 (148)
T 1tu1_A           73 LHKRWDINIHGHAAVLLDYQWQREGRDLMLRQVFIERRPAVLITTLTTTPADLPHHEPAWKQAMQTLVP  141 (148)
T ss_dssp             EEEEEEEEETTEEEEEEEEEEEETTEEEEEEEEEECCSSSEEEEEEEECGGGHHHHHHHHHHHHHTCEE
T ss_pred             EeeeEeEEEcCCcEEEEEEEEccCCEEEEEEEEEEEECCeEEEEEEEcCCCCCHHHHHHHHHHHHhccc
Confidence            22333334477776666666    445799888888877999999999999999999999999999985

>3lyd_A Uncharacterized protein; PSI-2, MCSG, GEBA, genomic encyclopae bacteria and archaea, structural genomics, protein structur initiative; HET: MSE; 1.45A {Jonesia denitrificans}

Probab=96.29  E-value=0.15  Score=42.32  Aligned_cols=126  Identities=13%  Similarity=0.112  Sum_probs=75.4

Q ss_pred             ccEEeeCCCCceecceeccccCCCCcceEEe-CCCCCC--ceEEEEEeecccccC-C-hHHHHHHHHhhccc-cchhccc
Q 026608           93 AEYIYDVPDGWKERLVSKVEKGTNGTDSEFY-NPKKRT--EKEYLTFLAGFRQLA-P-KDAVLNNLALSDVD-LQDLLAS  166 (236)
Q Consensus        93 ~~Y~y~vP~gW~ev~Vs~~e~g~~G~Dv~F~-d~~~~~--enVsvvi~s~i~~LG-~-peevl~~l~~~~~~-~~~~i~~  166 (236)
                      ..+.+.+|.||+...+       .|.-+.-. +...+.  -|+.|.+.    +++ + -|+.-..|- +..+ +++.-  
T Consensus        18 p~~~v~~P~gWe~~~~-------~~~~~~~~~~~~~~~F~pN~vVtv~----r~~~~~~e~~r~el~-~~~~~lp~~~--   83 (161)
T 3lyd_A           18 TGFTVPIPETWQPDPT-------MGTQFAARPHTPPQGFTPNIIGTVR----RAATGALHNQRTELD-QRATQLPDYA--   83 (161)
T ss_dssp             CEEEEECCTTEEECTT-------SSSSEEEEESSCCSSSCCEEEEEEE----EECTTHHHHHHHHHH-HHHTTSTTCE--
T ss_pred             ceeeccCCCCceEcCC-------CCceEEeccCCCCCCccccEEEEEE----ecCcHHHHHHHHHHH-HHHhhCCCcE--
Confidence            4599999999999863       22222222 222322  46644332    332 1 122111111 1111 34331  


Q ss_pred             ccceeeceeeecCCeeeEEEEEc----cCCcee--EEEEEE-eCCEEEEE--EeecCCccchhhHHHHHHHhhcceec
Q 026608          167 ADKVASEEKKDDKGQLYYVYEID----GVGSHS--LISVTC-ANNKLYAH--FVNAPTPEWNRDEETLRHVHESFKTV  235 (236)
Q Consensus       167 a~~llsa~~r~~dGktYY~yE~~----~~~rH~--LasvTV-~~GkLYtl--~v~a~ekrW~k~~~~Lr~VvdSF~V~  235 (236)
                         +++....+.+|..-|..||.    +.+.|.  +..+.| .++..|.+  .+++.+.+-....+.++.|++||+|.
T Consensus        84 ---~~~r~~~~~~G~pa~~iey~y~~~~~g~~aq~~~~vvve~~~v~~vv~lt~T~~~~q~~~~~~d~q~iv~sl~v~  158 (161)
T 3lyd_A           84 ---ERGRTETTVDGFPAYHIEYAYRHHGTITIAQMITLVEVSHPHAVDIIQLTATCAGDQTADYWDTFRLMHADLTVQ  158 (161)
T ss_dssp             ---EEEEEEEEETTEEEEEEEEEEEETTTEEEEEEEEEEEEECSSCEEEEEEEEEEEGGGHHHHHHHHHHHHHTCEEE
T ss_pred             ---eecccccccCCcccEEEEEEEecCCCceEeeEEEEEEEecCCEEEEEEEEEEeccccchHHHHHHHHHhheeEec
Confidence               23334568899999999998    234552  444555 45777777  88889999999999999999999984

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	236
d1v2ba_	171	d.107.1.2 (A:) Oxygen-evolving enhancer protein Ps	2e-18

>d1v2ba_ d.107.1.2 (A:) Oxygen-evolving enhancer protein PsbP {Common tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 171

class: Alpha and beta proteins (a+b)
fold: Mog1p/PsbP-like
superfamily: Mog1p/PsbP-like
family: PsbP-like
domain: Oxygen-evolving enhancer protein PsbP
species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]

 Score = 77.4 bits (190), Expect = 2e-18
 Identities = 27/164 (16%), Positives = 48/164 (29%), Gaps = 30/164 (18%)

Query: 95  YIYDVPDGWKERLVSKVEKGTNGTDSEFYNPKKRTEKEYLT-----------------FL 137
           +   +P  W      +      G    F +    T    +                  FL
Sbjct: 11  FKLQIPSKWNPNKEVEYP----GQVLRFEDNFDATSNVIVAITPTDKKSITDFGSPEQFL 66

Query: 138 AGFRQLAPKDAVLNNLALSDVDLQDLLASADKVASEEKKDDKGQLYYVYEI-------DG 190
           +    L  + A             D +A A+ + +   +   G+ YY   I       + 
Sbjct: 67  SQVDYLLGRQAYSGKTDSEGGFESDAVAIANVLETSTAEVG-GKQYYYLSILTRTADGNE 125

Query: 191 VGSHSLISVTCANNKLYAHFVNAPTPEWNRDEET-LRHVHESFK 233
            G H L++ T  + KLY     A    W +  +  + +   SF 
Sbjct: 126 GGKHQLVTATVNDGKLYICKAQAGDKRWFKGAKKFVENTATSFS 169

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	236
d1v2ba_	171	Oxygen-evolving enhancer protein PsbP {Common toba	100.0
d1tu1a_	144	Hypothetical protein PA0094 {Pseudomonas aeruginos	98.53

>d1v2ba_ d.107.1.2 (A:) Oxygen-evolving enhancer protein PsbP {Common tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a+b)
fold: Mog1p/PsbP-like
superfamily: Mog1p/PsbP-like
family: PsbP-like
domain: Oxygen-evolving enhancer protein PsbP
species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=100.00  E-value=1.3e-33  Score=234.49  Aligned_cols=137  Identities=18%  Similarity=0.266  Sum_probs=113.4

Q ss_pred             CCccEEeeCCCCceecceeccccCCCCcceEEeCCCCCCceEEEEEe----ecccccCChHHHHHHHHhhccc----c--
Q 026608           91 ASAEYIYDVPDGWKERLVSKVEKGTNGTDSEFYNPKKRTEKEYLTFL----AGFRQLAPKDAVLNNLALSDVD----L--  160 (236)
Q Consensus        91 dg~~Y~y~vP~gW~ev~Vs~~e~g~~G~Dv~F~d~~~~~enVsvvi~----s~i~~LG~peevl~~l~~~~~~----~--  160 (236)
                      |||+|.|  |+||+++.    +.+..|+|++|+|++++.+||+|+|.    .+|++||+|+++++.+......    .  
T Consensus         9 dgy~f~~--P~~W~~~~----~~~~~g~d~~f~d~~~~~~nv~V~v~p~~~~sl~~~G~p~~~~~~v~~~l~~~~~~~~~   82 (171)
T d1v2ba_           9 DGFKLQI--PSKWNPNK----EVEYPGQVLRFEDNFDATSNVIVAITPTDKKSITDFGSPEQFLSQVDYLLGRQAYSGKT   82 (171)
T ss_dssp             SSEEEEE--ETTCEECC----CCCSTTEEEEEEETTEEEEEEEEEEEECSCSSGGGGCSHHHHHHHTGGGC---------
T ss_pred             CCEEEEC--CCCCceec----ccCCCCceEEEeccccCCceEEEEEecCCCcchhhccChHHHHHHHHHHHhhhhhcccc
Confidence            7777777  99998865    34577999999999999999999887    3889999999998886433221    1  


Q ss_pred             -------chhcccccceeeceeeecCCeeeEEEEEc-------cCCceeEEEEEEeCCEEEEEEeecCCccchhh-HHHH
Q 026608          161 -------QDLLASADKVASEEKKDDKGQLYYVYEID-------GVGSHSLISVTCANNKLYAHFVNAPTPEWNRD-EETL  225 (236)
Q Consensus       161 -------~~~i~~a~~llsa~~r~~dGktYY~yE~~-------~~~rH~LasvTV~~GkLYtl~v~a~ekrW~k~-~~~L  225 (236)
                             ++.++ +.+|+++++++.||++||+|||.       .++||+|++++|++||||+|++|+||+||.++ ++.|
T Consensus        83 ~~~~~~~~~~~~-~a~v~~a~~~~~~G~~YY~~Ey~~~~~~~~~~~rh~l~~~~v~~grLYtl~~~~pe~~w~~~~~~~l  161 (171)
T d1v2ba_          83 DSEGGFESDAVA-IANVLETSTAEVGGKQYYYLSILTRTADGNEGGKHQLVTATVNDGKLYICKAQAGDKRWFKGAKKFV  161 (171)
T ss_dssp             ---------CCC-EEEEEEEEEEEETTEEEEEEEEEEEC-----CCEEEEEEEEEETTEEEEEEEEEEGGGCSTTTTHHH
T ss_pred             cccccccccccc-eeEEEEeeeeecCCEEEEEEEEEEecCCCCCcccEEEEEEEEeCCEEEEEEEecCHHHhhhhhHHHH
Confidence                   12233 44599999999999999999996       46799999999999999999999999999986 6789


Q ss_pred             HHHhhccee
Q 026608          226 RHVHESFKT  234 (236)
Q Consensus       226 r~VvdSF~V  234 (236)
                      |+|++||+|
T Consensus       162 ~~~v~SF~v  170 (171)
T d1v2ba_         162 ENTATSFSL  170 (171)
T ss_dssp             HHHHHTCEE
T ss_pred             HHHHhceEe
Confidence            999999997

>d1tu1a_ d.107.1.3 (A:) Hypothetical protein PA0094 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a+b)
fold: Mog1p/PsbP-like
superfamily: Mog1p/PsbP-like
family: PA0094-like
domain: Hypothetical protein PA0094
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.53  E-value=7.6e-07  Score=69.56  Aligned_cols=125  Identities=8%  Similarity=0.096  Sum_probs=84.7

Q ss_pred             EeeCCCCceecceeccccCCCCcceEEeCCCCCCceEEEEEe-ecccccCChHHHHHHHHhhccccchhcccccceeece
Q 026608           96 IYDVPDGWKERLVSKVEKGTNGTDSEFYNPKKRTEKEYLTFL-AGFRQLAPKDAVLNNLALSDVDLQDLLASADKVASEE  174 (236)
Q Consensus        96 ~y~vP~gW~ev~Vs~~e~g~~G~Dv~F~d~~~~~enVsvvi~-s~i~~LG~peevl~~l~~~~~~~~~~i~~a~~llsa~  174 (236)
                      +|.+|+||++..++         -+++.+ .++....+++|+ ..+.+=.+.++..++....   +...+..- .+++.+
T Consensus        12 s~~lP~gw~d~t~n---------i~~~~~-~~~~~~~~lvIsr~~l~~~~~l~~~~~~~~~~---l~~~l~~~-~~~~~~   77 (144)
T d1tu1a_          12 DLEIPDAWQDQSIN---------IFKLPA-SGPAREASFVISRDASQGDAPFADYVARQLEN---AEKQLPGF-KLHKRW   77 (144)
T ss_dssp             EEEEETTSEECCBE---------EEEECC-BTTBCCEEEEEEEECCCTTSCHHHHHHHHHHH---HHHHSTTC-EEEEEE
T ss_pred             EEeCCCCceeCcce---------EEEecC-CCCCcceEEEEEeecCCCCCCHHHHHHHHHHH---HHhhCCCc-EEEeeE
Confidence            56669999876642         122223 233333344554 4555556777776664322   11111111 155656


Q ss_pred             eeecCCeeeEEEEEc----cCCceeEEEEEEeCCEEEEEEeecCCccchhhHHHHHHHhhccee
Q 026608          175 KKDDKGQLYYVYEID----GVGSHSLISVTCANNKLYAHFVNAPTPEWNRDEETLRHVHESFKT  234 (236)
Q Consensus       175 ~r~~dGktYY~yE~~----~~~rH~LasvTV~~GkLYtl~v~a~ekrW~k~~~~Lr~VvdSF~V  234 (236)
                      ....+|+.-+..|+.    +...|+..++.+.++++|+|..+++...|...++.++.+++||+-
T Consensus        78 ~~~l~g~pa~~~~~t~~~~~~~v~Q~q~~~~~~~~~~~lt~t~~~~~~~~~~~~~~~il~Sf~p  141 (144)
T d1tu1a_          78 DINIHGHAAVLLDYQWQREGRDLMLRQVFIERRPAVLITTLTTTPADLPHHEPAWKQAMQTLVP  141 (144)
T ss_dssp             EEEETTEEEEEEEEEEEETTEEEEEEEEEECCSSSEEEEEEEECGGGHHHHHHHHHHHHHTCEE
T ss_pred             ecccCCCcEEEEEEEEeeCCEeEEEEEEEEEeCCCEEEEEEecCCcCCHHHHHHHHHHHHhCcc
Confidence            667789988888888    334699999999999999999999999999999999999999985