Citrus Sinensis ID: 026609

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230------
Protein Sequence
MVTMDQETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSNW
Secondary Structure (PSIPRED)
cccccccccccccEEEEEEccHHHHHHHHHHHHHHHHcccEEEEEccccHHHHHHHHHHHcccEEcccHHHHHHHHHccccccccccccccEEEccccccHHHHHHHHHHcccccEEEEcccccccccccccccccccccccccccccccccEEEEEEccccccccccccEEEEEEcccccccccccHHHHHHccccccccccccEEEEEccccEEEEcccHHHHHcccccccccc
Secondary Structure Prediction (SSPRO)
cccHHHHcccccccEEEEEccHHHHHHHHHHHHHHHHcccEEEEEccccHHHHHHHHHHccccEcccccHHHHHHHcccccccccHHHHHHHHcccccccHHHHHHHHHHcccccEEEEEccccccccEEEEcccccccccccccccEccccEEEEEcccccccccccccEEEEEEcccccccccccHHHHHHHHcccccEEcccEEEEccccEEEEEccHHHHHHcccccccccc
Coil and Loop (DISEMBL)
mvtmdqetageLDYVFLCVLPLFHVFGLAvitcgqlqkgsciILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKhglvkkfdlsslklvgsgaaplGKELMEECaknvpsatVIQVGYgltetsgiatmensfagsrnigsagalaPGVEALIVSvdtqkplppnqlgeiwlrgpnmmrgyynneqatkltidkkgwvhtgdlgyfdgdgqLYVVDRIKELIKykgfqvtsnw
Flexible Loop (DISEMBL)
mvtmdqetAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVdtqkplppnqLGEIWLRGPNMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELikykgfqvtsnw
Low Complexity Region (SEG)
MVTMDQETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSNW
Disordered region (IsUnstruct)
**********ELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV****
Disordered Region (DISOPRED)
*********GELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSN*
Disordered Region (DISEMBL)
********AGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSNW
Disordered Region (DISPRO)
**TMDQETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSNW
Transmembrane Helix (TMHMM)
iiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVTMDQETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSNW
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	236	2.2.26 [Sep-21-2011]
Q9M0X9	544	4-coumarate--CoA ligase-l	yes	no	0.978	0.424	0.702	1e-94
Q0DV32	552	4-coumarate--CoA ligase-l	yes	no	0.974	0.416	0.605	5e-80
Q84P21	546	4-coumarate--CoA ligase-l	no	no	0.915	0.395	0.456	7e-54
Q84P23	562	4-coumarate--CoA ligase-l	no	no	0.915	0.384	0.477	2e-53
Q10S72	552	4-coumarate--CoA ligase-l	no	no	0.906	0.387	0.460	2e-53
Q9S725	556	4-coumarate--CoA ligase 2	no	no	0.927	0.393	0.466	1e-52
O24145	547	4-coumarate--CoA ligase 1	N/A	no	0.915	0.394	0.481	1e-52
P0C5B6	550	4-coumarate--CoA ligase-l	no	no	0.927	0.398	0.454	2e-52
Q9S777	561	4-coumarate--CoA ligase 3	no	no	0.919	0.386	0.457	7e-52
Q6ZAC1	539	Probable 4-coumarate--CoA	no	no	0.927	0.406	0.457	8e-52

>sp|Q9M0X9|4CLL7_ARATH 4-coumarate--CoA ligase-like 7 OS=Arabidopsis thaliana GN=4CLL7 PE=1 SV=1

 Score =  345 bits (886), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 163/232 (70%), Positives = 192/232 (82%), Gaps = 1/232 (0%)

Query: 1   MVTMDQETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKH 60
           MVTMDQ+  GE   VFLC LP+FHVFGLAVIT  QLQ+G+ ++ MA+F+LE+ L+ IEK 
Sbjct: 221 MVTMDQDLMGEYHGVFLCFLPMFHVFGLAVITYSQLQRGNALVSMARFELELVLKNIEKF 280

Query: 61  RVTHIWVVPPLILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVG 120
           RVTH+WVVPP+ LAL+K  +VKKFDLSSLK +GSGAAPLGK+LMEEC +N+P+  ++Q G
Sbjct: 281 RVTHLWVVPPVFLALSKQSIVKKFDLSSLKYIGSGAAPLGKDLMEECGRNIPNVLLMQ-G 339

Query: 121 YGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNM 180
           YG+TET GI ++E+   G RN GSAG LAPGVEA IVSV+T K  PPNQ GEIW+RGPNM
Sbjct: 340 YGMTETCGIVSVEDPRLGKRNSGSAGMLAPGVEAQIVSVETGKSQPPNQQGEIWVRGPNM 399

Query: 181 MRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 232
           M+GY NN QATK TIDKK WVHTGDLGYF+ DG LYVVDRIKELIKYKGFQV
Sbjct: 400 MKGYLNNPQATKETIDKKSWVHTGDLGYFNEDGNLYVVDRIKELIKYKGFQV 451

Contributes to jasmonic acid biosynthesis by initiating the beta-oxidative chain shortening of its precursors.
Arabidopsis thaliana (taxid: 3702)
EC: 6EC: .EC: 2EC: .EC: 1EC: .EC: -

>sp|Q0DV32|4CLL1_ORYSJ 4-coumarate--CoA ligase-like 1 OS=Oryza sativa subsp. japonica GN=4CLL1 PE=2 SV=2

 Score =  297 bits (760), Expect = 5e-80,   Method: Compositional matrix adjust.
 Identities = 141/233 (60%), Positives = 181/233 (77%), Gaps = 3/233 (1%)

Query: 1   MVTMDQETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKH 60
           MVT DQ+   E   VFLC LP+FH+FGL+VIT  QL +G+ II M++FD+   + A+++H
Sbjct: 228 MVTSDQDERREGPNVFLCFLPMFHIFGLSVITYAQLHRGNAIIAMSRFDINSLMEAVQRH 287

Query: 61  RVTHIWVVPPLILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVG 120
           RVTH++ VPP+I+ALAKHG   K+DLSSLK +GSGAAPLGK++ME  AK  P + ++Q G
Sbjct: 288 RVTHLFCVPPVIIALAKHGKAGKYDLSSLKFIGSGAAPLGKDVMEVVAKKFPDSEIVQ-G 346

Query: 121 YGLTETSGIATMENSFAG-SRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPN 179
           YG+TET GI ++E    G +R  GS G L  GVEA IV + T K LPPNQ+GEI +RGPN
Sbjct: 347 YGMTETCGIISLEYPEKGQAREFGSTGTLVSGVEAKIVDIKTLKHLPPNQVGEICVRGPN 406

Query: 180 MMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 232
           +M+GY+NN QAT+ TI K+GW+HTGDLGYFDG GQL+VVDR+KELIKYKGFQ+
Sbjct: 407 VMQGYFNNVQATEFTI-KQGWLHTGDLGYFDGGGQLFVVDRLKELIKYKGFQI 458

Oryza sativa subsp. japonica (taxid: 39947)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: -

>sp|Q84P21|4CLL5_ARATH 4-coumarate--CoA ligase-like 5 OS=Arabidopsis thaliana GN=4CLL5 PE=1 SV=2

 Score =  210 bits (535), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 100/219 (45%), Positives = 150/219 (68%), Gaps = 3/219 (1%)

Query: 16  FLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILAL 75
           F+C +P+FH++GLA    G L  GS II+++KF++   + AI K++ T + +VPP+++A+
Sbjct: 234 FICTVPMFHIYGLAAFATGLLAYGSTIIVLSKFEMHEMMSAIGKYQATSLPLVPPILVAM 293

Query: 76  AKHG--LVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVGYGLTETSGIATME 133
                 +  K+DLSS+  V  G APL KE+ E  A+  P+  ++Q GYGLTE++GI    
Sbjct: 294 VNGADQIKAKYDLSSMHTVLCGGAPLSKEVTEGFAEKYPTVKILQ-GYGLTESTGIGAST 352

Query: 134 NSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQATKL 193
           ++   SR  G+AG L+  +E  IV   T + L P Q GE+WL+GP++M+GY++NE+AT  
Sbjct: 353 DTVEESRRYGTAGKLSASMEGRIVDPVTGQILGPKQTGELWLKGPSIMKGYFSNEEATSS 412

Query: 194 TIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 232
           T+D +GW+ TGDL Y D DG ++VVDR+KELIKYKG+QV
Sbjct: 413 TLDSEGWLRTGDLCYIDEDGFIFVVDRLKELIKYKGYQV 451

Contributes to jasmonic acid biosynthesis by initiating the beta-oxidative chain shortening of its precursors. Converts 12-oxo-phytodienoic acid (OPDA) and 3-oxo-2-(2'-pentenyl)-cyclopentane-1-octanoic acid (OPC-8:0) into OPDA-CoA and OPC-8:0-CoA, respectively.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: -

>sp|Q84P23|4CLL9_ARATH 4-coumarate--CoA ligase-like 9 OS=Arabidopsis thaliana GN=4CLL9 PE=1 SV=2

 Score =  209 bits (531), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 106/222 (47%), Positives = 149/222 (67%), Gaps = 6/222 (2%)

Query: 13  DYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLI 72
           D V L  LPLFHVFG  ++    +  G  ++L+ +F+LE   +A+EK++VT + V PPLI
Sbjct: 248 DRVGLFSLPLFHVFGFMMMIRA-ISLGETLVLLGRFELEAMFKAVEKYKVTGMPVSPPLI 306

Query: 73  LALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVGYGLTETSGIATM 132
           +AL K  L KK+DL SL+ +G G APLGK++ E   +  P   ++Q GYGLTE+SG A  
Sbjct: 307 VALVKSELTKKYDLRSLRSLGCGGAPLGKDIAERFKQKFPDVDIVQ-GYGLTESSGPAA- 364

Query: 133 ENSFAGSRNI--GSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQA 190
            ++F     +  GS G ++  +EA IV   T + LPP + GE+WLRGP +M+GY  NE+A
Sbjct: 365 -STFGPEEMVKYGSVGRISENMEAKIVDPSTGESLPPGKTGELWLRGPVIMKGYVGNEKA 423

Query: 191 TKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 232
           +  T+DK+GW+ TGDL YFD +  LY+VDR+KELIKYK +QV
Sbjct: 424 SAETVDKEGWLKTGDLCYFDSEDFLYIVDRLKELIKYKAYQV 465

Contributes to jasmonic acid biosynthesis by initiating the beta-oxidative chain shortening of its precursors. Converts 12-oxo-phytodienoic acid (OPDA) into OPDA-CoA.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: -

>sp|Q10S72|4CLL4_ORYSJ 4-coumarate--CoA ligase-like 4 OS=Oryza sativa subsp. japonica GN=4CLL4 PE=2 SV=1

 Score =  209 bits (531), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 100/217 (46%), Positives = 146/217 (67%), Gaps = 3/217 (1%)

Query: 16  FLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILAL 75
           FLC +P+FHV+GL     G L  G+ +++++K++L   LR+I  + VT++ +VPP+++A+
Sbjct: 246 FLCTVPMFHVYGLVAFATGLLGCGATVVVLSKYELPEMLRSINAYGVTYLPLVPPILVAM 305

Query: 76  AKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVGYGLTETSGIATMENS 135
             H   K   L  ++ V SG APLGKEL+E   +  P   ++Q GYGLTE++ I    +S
Sbjct: 306 VAHP--KPLPLGQMRKVLSGGAPLGKELIEGFREKYPQVEILQ-GYGLTESTAIGASTDS 362

Query: 136 FAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQATKLTI 195
              SR  G+AG L+P  EA IV  D+ + LP N+ GE+W+RGP +M+GY+ N +AT+ T+
Sbjct: 363 AEESRRYGTAGLLSPNTEAKIVDPDSGEALPVNRTGELWIRGPYVMKGYFKNAEATQSTL 422

Query: 196 DKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 232
              GW+ TGDL Y D DG L+VVDR+KELIKYKG+QV
Sbjct: 423 TPDGWLKTGDLCYIDEDGYLFVVDRLKELIKYKGYQV 459

Oryza sativa subsp. japonica (taxid: 39947)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: -

>sp|Q9S725|4CL2_ARATH 4-coumarate--CoA ligase 2 OS=Arabidopsis thaliana GN=4CL2 PE=1 SV=2

 Score =  206 bits (525), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 104/223 (46%), Positives = 146/223 (65%), Gaps = 4/223 (1%)

Query: 13  DYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLI 72
           D V LCVLP+FH++ L  I    L+ G+ I++M KF++ + L  I++ +VT   VVPP++
Sbjct: 240 DDVILCVLPMFHIYALNSIMLCSLRVGATILIMPKFEITLLLEQIQRCKVTVAMVVPPIV 299

Query: 73  LALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVGYGLTETSGIATM 132
           LA+AK    +K+DLSS+++V SGAAPLGKEL +  +   P+A + Q GYG+TE   +  M
Sbjct: 300 LAIAKSPETEKYDLSSVRMVKSGAAPLGKELEDAISAKFPNAKLGQ-GYGMTEAGPVLAM 358

Query: 133 ENSFAGSR---NIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQ 189
              FA        G+ G +    E  I+  DT   LP N+ GEI +RG  +M+GY N+  
Sbjct: 359 SLGFAKEPFPVKSGACGTVVRNAEMKILDPDTGDSLPRNKPGEICIRGNQIMKGYLNDPL 418

Query: 190 ATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 232
           AT  TIDK GW+HTGD+G+ D D +L++VDR+KELIKYKGFQV
Sbjct: 419 ATASTIDKDGWLHTGDVGFIDDDDELFIVDRLKELIKYKGFQV 461

Produces CoA thioesters of a variety of hydroxy- and methoxy-substituted cinnamic acids, which are used to synthesize several phenylpropanoid-derived compounds, including anthocyanins, flavonoids, isoflavonoids, coumarins, lignin, suberin and wall-bound phenolics.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: 2

>sp|O24145|4CL1_TOBAC 4-coumarate--CoA ligase 1 OS=Nicotiana tabacum GN=4CL1 PE=2 SV=1

 Score =  206 bits (524), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 107/222 (48%), Positives = 150/222 (67%), Gaps = 6/222 (2%)

Query: 15  VFLCVLPLFHVFGL-AVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLIL 73
           V +CVLPLFH++ L +++ CG L+ G+ I++M KFD+  FL  I+K++V+    VPP++L
Sbjct: 233 VLMCVLPLFHIYSLNSILLCG-LRVGAAILIMQKFDIAPFLELIQKYKVSIGPFVPPIVL 291

Query: 74  ALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVGYGLTETSGIATME 133
           A+AK  +V  +DLSS++ V SGAAPLGKEL +      P+A + Q GYG+TE   +  M 
Sbjct: 292 AIAKSPIVDSYDLSSVRTVMSGAAPLGKELEDAVRTKFPNAKLGQ-GYGMTEAGPVLAMC 350

Query: 134 NSFAGSR---NIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQA 190
            +FA        G+ G +    E  IV  DT   LP NQ GEI +RG  +M+GY N+ +A
Sbjct: 351 LAFAKEPFDIKSGACGTVVRNAEMKIVDPDTGCSLPRNQPGEICIRGDQIMKGYLNDPEA 410

Query: 191 TKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 232
           T  TIDK+GW+HTGD+G+ D D +L++VDR+KELIKYKGFQV
Sbjct: 411 TTRTIDKEGWLHTGDIGFIDEDDELFIVDRLKELIKYKGFQV 452

Nicotiana tabacum (taxid: 4097)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: 2

>sp|P0C5B6|4CLL4_ARATH 4-coumarate--CoA ligase-like 4 OS=Arabidopsis thaliana GN=4CLL4 PE=2 SV=1

 Score =  206 bits (523), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 101/222 (45%), Positives = 147/222 (66%), Gaps = 3/222 (1%)

Query: 13  DYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLI 72
           D +F+C +P+FH +GL     G +  GS ++++ +F L   + A+EKHR T + + PP++
Sbjct: 237 DDIFICTVPMFHTYGLLTFAMGTVALGSTVVILRRFQLHDMMDAVEKHRATALALAPPVL 296

Query: 73  LALAKHG-LVK-KFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVGYGLTETSGIA 130
           +A+     L+K K+DLSSLK V  G APL KE+ E   +  P+  ++Q GY LTE++G  
Sbjct: 297 VAMINDADLIKAKYDLSSLKTVRCGGAPLSKEVTEGFLEKYPTVDILQ-GYALTESNGGG 355

Query: 131 TMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQA 190
              NS   SR  G+AG L   VEA IV  +T + +  NQ GE+WL+GP++ +GY+ N++A
Sbjct: 356 AFTNSAEESRRYGTAGTLTSDVEARIVDPNTGRFMGINQTGELWLKGPSISKGYFKNQEA 415

Query: 191 TKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 232
           T  TI+ +GW+ TGDL Y D DG L+VVDR+KELIKYKG+QV
Sbjct: 416 TNETINLEGWLKTGDLCYIDEDGFLFVVDRLKELIKYKGYQV 457

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: -

>sp|Q9S777|4CL3_ARATH 4-coumarate--CoA ligase 3 OS=Arabidopsis thaliana GN=4CL3 PE=1 SV=1

 Score =  203 bits (517), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 101/221 (45%), Positives = 147/221 (66%), Gaps = 4/221 (1%)

Query: 15  VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILA 74
           V LCVLPLFH++ L  +    L+ G+ ++LM KF++   L  I++HRVT   +VPPL++A
Sbjct: 252 VILCVLPLFHIYSLNSVLLNSLRSGATVLLMHKFEIGALLDLIQRHRVTIAALVPPLVIA 311

Query: 75  LAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVGYGLTETSGIATMEN 134
           LAK+  V  +DLSS++ V SGAAPLGKEL +   + +P A + Q GYG+TE   + +M  
Sbjct: 312 LAKNPTVNSYDLSSVRFVLSGAAPLGKELQDSLRRRLPQAILGQ-GYGMTEAGPVLSMSL 370

Query: 135 SFAGS---RNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQAT 191
            FA        GS G +    E  +V ++T+  L  NQ GEI +RG  +M+ Y N+ +AT
Sbjct: 371 GFAKEPIPTKSGSCGTVVRNAELKVVHLETRLSLGYNQPGEICIRGQQIMKEYLNDPEAT 430

Query: 192 KLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 232
             TID++GW+HTGD+GY D D ++++VDR+KE+IK+KGFQV
Sbjct: 431 SATIDEEGWLHTGDIGYVDEDDEIFIVDRLKEVIKFKGFQV 471

Produces CoA thioesters of a variety of hydroxy- and methoxy-substituted cinnamic acids, which are used to synthesize several phenylpropanoid-derived compounds, including anthocyanins, flavonoids, isoflavonoids, coumarins, lignin, suberin and wall-bound phenolics.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: 2

>sp|Q6ZAC1|4CL5_ORYSJ Probable 4-coumarate--CoA ligase 5 OS=Oryza sativa subsp. japonica GN=4CL5 PE=2 SV=1

 Score =  203 bits (517), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 103/225 (45%), Positives = 151/225 (67%), Gaps = 6/225 (2%)

Query: 13  DYVFLCVLPLFHVFGL-AVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPL 71
           D V LCVLP+FHV+ L +++ CG ++ G+ I++M +FD    L+ +E+H VT   +VPP+
Sbjct: 222 DDVVLCVLPMFHVYSLHSILLCG-MRAGAAIVVMKRFDTVKMLQLVERHGVTIAPLVPPI 280

Query: 72  ILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVGYGLTETSGIAT 131
           ++ +AK   + + DLSS+++V SGAAP+GKEL +     +P+A + Q GYG+TE   + +
Sbjct: 281 VVEMAKSDALDRHDLSSIRMVISGAAPMGKELQDIVHAKLPNAVLGQ-GYGMTEAGPVLS 339

Query: 132 MENSFAGSRN---IGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNE 188
           M  +FA        G+ G +    E  IV  DT   LP NQ GEI +RG  +M+GY NN 
Sbjct: 340 MCMAFAKEPTPVKSGACGTVVRNAELKIVDPDTGLSLPRNQPGEICIRGKQIMKGYLNNP 399

Query: 189 QATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVT 233
           +AT+ TIDK GW+HTGD+G+ D D ++++VDR+KELIKYKGFQV 
Sbjct: 400 EATEKTIDKDGWLHTGDIGFVDDDDEIFIVDRLKELIKYKGFQVA 444

Oryza sativa subsp. japonica (taxid: 39947)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: 2

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	236
255565415	542	AMP dependent CoA ligase, putative [Rici	0.978	0.426	0.732	1e-98
380042366	543	acyl-activating enzyme 3 [Cannabis sativ	0.978	0.425	0.728	1e-97
224127622	543	4-coumarate-coa ligase [Populus trichoca	0.978	0.425	0.719	1e-96
224077516	543	4-coumarate-coa ligase [Populus trichoca	0.978	0.425	0.715	2e-95
373432591	540	4-coumarate--CoA ligase-like 7-like [Gly	0.978	0.427	0.706	1e-93
15234634	544	4-coumarate--CoA ligase-like 7 [Arabidop	0.978	0.424	0.702	7e-93
297809709	544	hypothetical protein ARALYDRAFT_490166 [	0.978	0.424	0.698	8e-93
312281669	543	unnamed protein product [Thellungiella h	0.978	0.425	0.689	1e-91
356539342	548	PREDICTED: 4-coumarate--CoA ligase-like	0.978	0.421	0.676	2e-91
449459112	543	PREDICTED: 4-coumarate--CoA ligase-like	0.978	0.425	0.711	7e-91

>gi|255565415|ref|XP_002523698.1| AMP dependent CoA ligase, putative [Ricinus communis] gi|223537002|gb|EEF38638.1| AMP dependent CoA ligase, putative [Ricinus communis]

 Score =  365 bits (936), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 170/232 (73%), Positives = 197/232 (84%), Gaps = 1/232 (0%)

Query: 1   MVTMDQETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKH 60
           M+TMDQE AGEL  VFLC LP+FHVFGLAVI   QLQ G+ ++ M KFD E+ L+A+EK+
Sbjct: 219 MITMDQEIAGELHNVFLCFLPMFHVFGLAVIAYSQLQTGNAVVSMGKFDFELVLKAVEKY 278

Query: 61  RVTHIWVVPPLILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVG 120
           R+TH+WVVPP+ILALAK  LVKK+DLSSL+ VGSGAAPL KELMEECAK +P A + Q G
Sbjct: 279 RITHLWVVPPVILALAKQSLVKKYDLSSLQHVGSGAAPLSKELMEECAKTIPHAAIAQ-G 337

Query: 121 YGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNM 180
           YG+TET+GI ++EN   G R+ GSAG LA G+EA I+SVDT KPLPPNQLGEIW+RGPNM
Sbjct: 338 YGMTETTGIVSVENPRIGVRHSGSAGTLAAGIEAQIISVDTLKPLPPNQLGEIWVRGPNM 397

Query: 181 MRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 232
           MRGY+NN QATK TIDKKGW+HTGDLGYFD DG+LYVVDRIKELIKYKGFQV
Sbjct: 398 MRGYFNNPQATKQTIDKKGWLHTGDLGYFDEDGKLYVVDRIKELIKYKGFQV 449

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|380042366|gb|AFD33347.1| acyl-activating enzyme 3 [Cannabis sativa]

 Score =  361 bits (927), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 169/232 (72%), Positives = 199/232 (85%), Gaps = 1/232 (0%)

Query: 1   MVTMDQETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKH 60
           MVTM+Q+  GE+D VFLC LP+FHVFGLA+IT  QLQ+G+ +I MA+FDLE  L+ +EK+
Sbjct: 220 MVTMEQDLVGEMDNVFLCFLPMFHVFGLAIITYAQLQRGNTVISMARFDLEKMLKDVEKY 279

Query: 61  RVTHIWVVPPLILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVG 120
           +VTH+WVVPP+ILAL+K+ +VKKF+LSS+K +GSGAAPLGK+LMEEC+K VP   V Q G
Sbjct: 280 KVTHLWVVPPVILALSKNSMVKKFNLSSIKYIGSGAAPLGKDLMEECSKVVPYGIVAQ-G 338

Query: 121 YGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNM 180
           YG+TET GI +ME+   G RN GSAG LA GVEA IVSVDT KPLPPNQLGEIW++GPNM
Sbjct: 339 YGMTETCGIVSMEDIRGGKRNSGSAGMLASGVEAQIVSVDTLKPLPPNQLGEIWVKGPNM 398

Query: 181 MRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 232
           M+GY+NN QATKLTIDKKGWVHTGDLGYFD DG LYVVDRIKELIKYKGFQV
Sbjct: 399 MQGYFNNPQATKLTIDKKGWVHTGDLGYFDEDGHLYVVDRIKELIKYKGFQV 450

Source: Cannabis sativa

Species: Cannabis sativa

Genus: Cannabis

Family: Cannabaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224127622|ref|XP_002329323.1| 4-coumarate-coa ligase [Populus trichocarpa] gi|224127626|ref|XP_002329324.1| acyl:coa ligase [Populus trichocarpa] gi|222870777|gb|EEF07908.1| 4-coumarate-coa ligase [Populus trichocarpa] gi|222870778|gb|EEF07909.1| acyl:coa ligase [Populus trichocarpa]

 Score =  358 bits (918), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 167/232 (71%), Positives = 197/232 (84%), Gaps = 1/232 (0%)

Query: 1   MVTMDQETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKH 60
           MV+MDQ  AGE+  VFLC LP+FHVFGLAVIT  QLQ G+ ++ M KF+ EM LR IEK+
Sbjct: 220 MVSMDQVMAGEIHNVFLCFLPMFHVFGLAVITYSQLQMGNAVVSMGKFEFEMVLRTIEKY 279

Query: 61  RVTHIWVVPPLILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVG 120
           RVTH+WVVPP+ILAL+K  LVKK+DLSSL+ +GSGAAPLGK+LM+ECAKN+P  T+IQ G
Sbjct: 280 RVTHMWVVPPVILALSKQNLVKKYDLSSLRNIGSGAAPLGKDLMKECAKNLPDTTIIQ-G 338

Query: 121 YGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNM 180
           +G+TET GI ++E+   G R+ GSAG L  G+EA I+SV+T KPLPPNQLGEIW+RGPNM
Sbjct: 339 FGMTETCGIVSLEDPRIGVRHSGSAGILNAGIEAQIISVETAKPLPPNQLGEIWVRGPNM 398

Query: 181 MRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 232
           MRGY+NN QATK TIDKKGWVHTGDLGYFD DGQL+VVDRIKELIKYKGFQV
Sbjct: 399 MRGYFNNPQATKDTIDKKGWVHTGDLGYFDDDGQLFVVDRIKELIKYKGFQV 450

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224077516|ref|XP_002305282.1| 4-coumarate-coa ligase [Populus trichocarpa] gi|222848246|gb|EEE85793.1| 4-coumarate-coa ligase [Populus trichocarpa]

 Score =  354 bits (909), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 166/232 (71%), Positives = 197/232 (84%), Gaps = 1/232 (0%)

Query: 1   MVTMDQETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKH 60
           MVTMDQ  AGE+  VFLC LP+FHVFGLAVIT  QLQ G+ ++ M KF+ EM L+ IEKH
Sbjct: 220 MVTMDQAMAGEMHDVFLCFLPMFHVFGLAVITYSQLQMGNAVVSMGKFEFEMVLKTIEKH 279

Query: 61  RVTHIWVVPPLILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVG 120
           RVT +WVVPP++LALAK  +VKK+D+SSL+ +GSGAAPLGK+LM+ECAKN+P  T+I  G
Sbjct: 280 RVTDMWVVPPVVLALAKQDMVKKYDISSLRNIGSGAAPLGKDLMKECAKNLPD-TIISQG 338

Query: 121 YGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNM 180
           YG+TET GI ++E+S  G R+ GSAG LA G+EA IVSV+T KPLPPNQLGEIW+RGPNM
Sbjct: 339 YGMTETCGIVSVEDSRLGVRHSGSAGILAAGIEAQIVSVETLKPLPPNQLGEIWVRGPNM 398

Query: 181 MRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 232
           MRGY+NN QATK T+DKKGWVHTGD+GYFD DGQL+VVDRIKELIKYKGFQV
Sbjct: 399 MRGYFNNPQATKDTMDKKGWVHTGDVGYFDDDGQLFVVDRIKELIKYKGFQV 450

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|373432591|ref|NP_001243292.1| 4-coumarate--CoA ligase-like 7-like [Glycine max] gi|370316591|gb|AEX25890.1| 4-coumarate:CoA ligase [Glycine max]

 Score =  348 bits (893), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 164/232 (70%), Positives = 193/232 (83%), Gaps = 1/232 (0%)

Query: 1   MVTMDQETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKH 60
           M+  D + AG L  VFLCVLP+FHVFGL VI+ GQLQ+GS ++ + KF+ E+ L+ IEK 
Sbjct: 217 MIGFDDDLAGVLHSVFLCVLPMFHVFGLMVISYGQLQRGSAVVSLKKFEFELVLKTIEKF 276

Query: 61  RVTHIWVVPPLILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVG 120
           +VTH+WVVPP+ILALAKHGLV K+DLSSLK +GSGAAPLGKELM+ECAK  P A V Q G
Sbjct: 277 KVTHLWVVPPIILALAKHGLVDKYDLSSLKHIGSGAAPLGKELMKECAKRFPHAIVSQ-G 335

Query: 121 YGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNM 180
           YG+TET GI ++EN+  G RN GS G L  G+EA +VSVDT KPLPP QLGEIW+RGPNM
Sbjct: 336 YGMTETCGIVSVENARMGIRNSGSTGMLVAGMEAQVVSVDTLKPLPPGQLGEIWVRGPNM 395

Query: 181 MRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 232
           M+GY+NN QAT+LT+DKKGWVHTGDLGYFD DGQL+VVDRIKELIKYKGFQV
Sbjct: 396 MQGYHNNPQATRLTMDKKGWVHTGDLGYFDEDGQLFVVDRIKELIKYKGFQV 447

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15234634|ref|NP_192425.1| 4-coumarate--CoA ligase-like 7 [Arabidopsis thaliana] gi|75311763|sp|Q9M0X9.1|4CLL7_ARATH RecName: Full=4-coumarate--CoA ligase-like 7; AltName: Full=4-coumarate--CoA ligase isoform 6; Short=At4CL6 gi|7267275|emb|CAB81058.1| 4-coumarate--CoA ligase-like protein [Arabidopsis thaliana] gi|20258834|gb|AAM13899.1| putative 4-coumarate--CoA ligase [Arabidopsis thaliana] gi|21689723|gb|AAM67483.1| putative 4-coumarate--CoA ligase [Arabidopsis thaliana] gi|29893227|gb|AAP03022.1| 4-coumarate-CoA ligase-like protein [Arabidopsis thaliana] gi|332657086|gb|AEE82486.1| 4-coumarate--CoA ligase-like 7 [Arabidopsis thaliana]

 Score =  345 bits (886), Expect = 7e-93,   Method: Compositional matrix adjust.
 Identities = 163/232 (70%), Positives = 192/232 (82%), Gaps = 1/232 (0%)

Query: 1   MVTMDQETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKH 60
           MVTMDQ+  GE   VFLC LP+FHVFGLAVIT  QLQ+G+ ++ MA+F+LE+ L+ IEK 
Sbjct: 221 MVTMDQDLMGEYHGVFLCFLPMFHVFGLAVITYSQLQRGNALVSMARFELELVLKNIEKF 280

Query: 61  RVTHIWVVPPLILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVG 120
           RVTH+WVVPP+ LAL+K  +VKKFDLSSLK +GSGAAPLGK+LMEEC +N+P+  ++Q G
Sbjct: 281 RVTHLWVVPPVFLALSKQSIVKKFDLSSLKYIGSGAAPLGKDLMEECGRNIPNVLLMQ-G 339

Query: 121 YGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNM 180
           YG+TET GI ++E+   G RN GSAG LAPGVEA IVSV+T K  PPNQ GEIW+RGPNM
Sbjct: 340 YGMTETCGIVSVEDPRLGKRNSGSAGMLAPGVEAQIVSVETGKSQPPNQQGEIWVRGPNM 399

Query: 181 MRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 232
           M+GY NN QATK TIDKK WVHTGDLGYF+ DG LYVVDRIKELIKYKGFQV
Sbjct: 400 MKGYLNNPQATKETIDKKSWVHTGDLGYFNEDGNLYVVDRIKELIKYKGFQV 451

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297809709|ref|XP_002872738.1| hypothetical protein ARALYDRAFT_490166 [Arabidopsis lyrata subsp. lyrata] gi|297318575|gb|EFH48997.1| hypothetical protein ARALYDRAFT_490166 [Arabidopsis lyrata subsp. lyrata]

 Score =  345 bits (886), Expect = 8e-93,   Method: Compositional matrix adjust.
 Identities = 162/232 (69%), Positives = 192/232 (82%), Gaps = 1/232 (0%)

Query: 1   MVTMDQETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKH 60
           MVTMDQ+  GE   VFLC LP+FHVFGL VIT  QLQ+G+ ++ MAKF+LE+ L+ IEK+
Sbjct: 221 MVTMDQDLMGEYHGVFLCFLPMFHVFGLTVITYSQLQRGNALVSMAKFELELVLKNIEKY 280

Query: 61  RVTHIWVVPPLILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVG 120
           RVTH+WVVPP+ LAL+K  +VKKFDLSSLK +GSGAAPLGK+LMEEC +N+P+  ++Q G
Sbjct: 281 RVTHLWVVPPVFLALSKQSIVKKFDLSSLKYIGSGAAPLGKDLMEECGRNIPNVLLMQ-G 339

Query: 121 YGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNM 180
           YG+TET GI ++E+   G RN GSAG LAPGVEA IVSV+T    PPNQ GEIW+RGPNM
Sbjct: 340 YGMTETCGIVSVEDPRLGKRNSGSAGMLAPGVEAQIVSVETGNSQPPNQQGEIWVRGPNM 399

Query: 181 MRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 232
           M+GY NN QATK TIDKKGWVHTGDLGYF+ DG LYVVDR+KELIKYKGFQV
Sbjct: 400 MKGYLNNPQATKETIDKKGWVHTGDLGYFNEDGNLYVVDRLKELIKYKGFQV 451

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|312281669|dbj|BAJ33700.1| unnamed protein product [Thellungiella halophila]

 Score =  342 bits (876), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 160/232 (68%), Positives = 191/232 (82%), Gaps = 1/232 (0%)

Query: 1   MVTMDQETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKH 60
           MVTMDQ+  GE   VFLC LP+FHVFGL VIT  QLQ+G+ +I MAKF+LE  L+ IEK+
Sbjct: 220 MVTMDQDLMGEYHAVFLCFLPMFHVFGLTVITYSQLQRGNAVISMAKFELETLLKNIEKY 279

Query: 61  RVTHIWVVPPLILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVG 120
           RVT +WVVPP+ LAL+K  +VKK+DLSSLK +GSGAAPLGK+LMEEC +N+ +  ++Q G
Sbjct: 280 RVTQLWVVPPVFLALSKQSIVKKYDLSSLKYIGSGAAPLGKDLMEECGRNISNVVLMQ-G 338

Query: 121 YGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNM 180
           YG+TET GI ++E+   G RN GSAG LAPGVEA IVSV++ K  PPNQLGEIW+RGPNM
Sbjct: 339 YGMTETCGIVSVEDPRLGKRNSGSAGMLAPGVEAQIVSVESGKSQPPNQLGEIWVRGPNM 398

Query: 181 MRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 232
           M+GY NN QATK TID+KGWVHTGDLGYF+ DG L+VVDRIKELIKYKGFQV
Sbjct: 399 MKGYLNNPQATKETIDRKGWVHTGDLGYFNEDGNLFVVDRIKELIKYKGFQV 450

Source: Thellungiella halophila

Species: Eutrema halophilum

Genus: Eutrema

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356539342|ref|XP_003538157.1| PREDICTED: 4-coumarate--CoA ligase-like 7-like [Glycine max]

 Score =  341 bits (874), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 157/232 (67%), Positives = 189/232 (81%), Gaps = 1/232 (0%)

Query: 1   MVTMDQETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKH 60
           M+ MD + AGE D V+LCVLP+FHVFGLAV+T   L++GS +++M +F+LE  L+AIEK 
Sbjct: 225 MIGMDDDLAGEQDDVYLCVLPMFHVFGLAVVTYAALRRGSAVVVMERFELEALLKAIEKQ 284

Query: 61  RVTHIWVVPPLILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVG 120
           RVT +WVVPP++L LAK  +V  +DLSSL+ +GSGAAPLGK+LMEEC +  P   + Q G
Sbjct: 285 RVTKLWVVPPILLGLAKQSVVGNYDLSSLRRIGSGAAPLGKDLMEECGRRFPHVAICQ-G 343

Query: 121 YGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNM 180
           YG+TET GI ++EN   G R+ GS G L  GVEA IVSVDTQKPLPP QLGEIW+RGPNM
Sbjct: 344 YGMTETCGIVSVENPRVGVRHTGSTGTLVSGVEAQIVSVDTQKPLPPRQLGEIWVRGPNM 403

Query: 181 MRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 232
           M+GY+NN +AT+LTIDKKGWVHTGDLGYFD DGQLYVVDRIKELIKYKGFQV
Sbjct: 404 MQGYHNNPEATRLTIDKKGWVHTGDLGYFDEDGQLYVVDRIKELIKYKGFQV 455

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449459112|ref|XP_004147290.1| PREDICTED: 4-coumarate--CoA ligase-like 7-like [Cucumis sativus] gi|449528351|ref|XP_004171168.1| PREDICTED: 4-coumarate--CoA ligase-like 7-like [Cucumis sativus]

 Score =  339 bits (869), Expect = 7e-91,   Method: Compositional matrix adjust.
 Identities = 165/232 (71%), Positives = 189/232 (81%), Gaps = 1/232 (0%)

Query: 1   MVTMDQETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKH 60
           M+TMDQ   GE   VFL  LP+FHVFGLA IT  QLQKG+ ++ M KF+LE  L A+EK+
Sbjct: 220 MITMDQTFNGEEHGVFLNFLPMFHVFGLACITYAQLQKGNTVVSMPKFNLEKALWAVEKY 279

Query: 61  RVTHIWVVPPLILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVG 120
           +VT +WVVPP++LALAK  LVKK++LSS+K VGSGAAPLG+ELMEECA N+PSA VIQ G
Sbjct: 280 KVTDLWVVPPVVLALAKQSLVKKYNLSSVKRVGSGAAPLGRELMEECANNIPSAVVIQ-G 338

Query: 121 YGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNM 180
           YG+TET G+  +EN   G RN GSAG LA GVEA IVSVDT KPLPPNQ GEI +RGPNM
Sbjct: 339 YGMTETCGVVALENPAVGKRNSGSAGTLASGVEAKIVSVDTLKPLPPNQYGEIHVRGPNM 398

Query: 181 MRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 232
           M GY+NN +ATK TIDK GWVHTGDLGYFD +GQLYVVDRIKELIKYKGFQV
Sbjct: 399 MLGYFNNPEATKQTIDKHGWVHTGDLGYFDENGQLYVVDRIKELIKYKGFQV 450

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	236
TAIR|locus:2115673	544	AT4G05160 [Arabidopsis thalian	0.978	0.424	0.702	3.3e-86
TAIR|locus:2034392	546	OPCL1 "OPC-8:0 CoA ligase1" [A	0.915	0.395	0.456	6.5e-51
TAIR|locus:2158559	562	AT5G63380 [Arabidopsis thalian	0.915	0.384	0.477	1.1e-50
TAIR|locus:2034403	550	AT1G20500 [Arabidopsis thalian	0.927	0.398	0.454	3.6e-50
TAIR|locus:2015003	561	4CL3 "4-coumarate:CoA ligase 3	0.919	0.386	0.457	1.5e-49
TAIR|locus:2017602	561	4CL1 "4-coumarate:CoA ligase 1	0.923	0.388	0.473	2e-49
TAIR|locus:2094716	556	4CL2 "4-coumarate:CoA ligase 2	0.927	0.393	0.466	3.2e-49
TAIR|locus:2034423	565	AT1G20480 [Arabidopsis thalian	0.911	0.380	0.435	2.9e-48
TAIR|locus:2117209	566	AT4G19010 [Arabidopsis thalian	0.911	0.379	0.443	2.6e-47
ASPGD|ASPL0000006875	562	AN5990 [Emericella nidulans (t	0.906	0.380	0.440	1.8e-46

TAIR|locus:2115673 AT4G05160 [Arabidopsis thaliana (taxid:3702)]

 Score = 862 (308.5 bits), Expect = 3.3e-86, P = 3.3e-86
 Identities = 163/232 (70%), Positives = 192/232 (82%)

Query:     1 MVTMDQETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKH 60
             MVTMDQ+  GE   VFLC LP+FHVFGLAVIT  QLQ+G+ ++ MA+F+LE+ L+ IEK 
Sbjct:   221 MVTMDQDLMGEYHGVFLCFLPMFHVFGLAVITYSQLQRGNALVSMARFELELVLKNIEKF 280

Query:    61 RVTHIWVVPPLILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVG 120
             RVTH+WVVPP+ LAL+K  +VKKFDLSSLK +GSGAAPLGK+LMEEC +N+P+  ++Q G
Sbjct:   281 RVTHLWVVPPVFLALSKQSIVKKFDLSSLKYIGSGAAPLGKDLMEECGRNIPNVLLMQ-G 339

Query:   121 YGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNM 180
             YG+TET GI ++E+   G RN GSAG LAPGVEA IVSV+T K  PPNQ GEIW+RGPNM
Sbjct:   340 YGMTETCGIVSVEDPRLGKRNSGSAGMLAPGVEAQIVSVETGKSQPPNQQGEIWVRGPNM 399

Query:   181 MRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 232
             M+GY NN QATK TIDKK WVHTGDLGYF+ DG LYVVDRIKELIKYKGFQV
Sbjct:   400 MKGYLNNPQATKETIDKKSWVHTGDLGYFNEDGNLYVVDRIKELIKYKGFQV 451

GO:0003824 "catalytic activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0016207 "4-coumarate-CoA ligase activity" evidence=ISS

GO:0004321 "fatty-acyl-CoA synthase activity" evidence=IDA

GO:0005777 "peroxisome" evidence=IDA

GO:0009695 "jasmonic acid biosynthetic process" evidence=IDA

GO:0009850 "auxin metabolic process" evidence=IDA

GO:0009851 "auxin biosynthetic process" evidence=IDA

TAIR|locus:2034392 OPCL1 "OPC-8:0 CoA ligase1" [Arabidopsis thaliana (taxid:3702)]

 Score = 529 (191.3 bits), Expect = 6.5e-51, P = 6.5e-51
 Identities = 100/219 (45%), Positives = 150/219 (68%)

Query:    16 FLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILAL 75
             F+C +P+FH++GLA    G L  GS II+++KF++   + AI K++ T + +VPP+++A+
Sbjct:   234 FICTVPMFHIYGLAAFATGLLAYGSTIIVLSKFEMHEMMSAIGKYQATSLPLVPPILVAM 293

Query:    76 AKHG--LVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVGYGLTETSGIATME 133
                   +  K+DLSS+  V  G APL KE+ E  A+  P+  ++Q GYGLTE++GI    
Sbjct:   294 VNGADQIKAKYDLSSMHTVLCGGAPLSKEVTEGFAEKYPTVKILQ-GYGLTESTGIGAST 352

Query:   134 NSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQATKL 193
             ++   SR  G+AG L+  +E  IV   T + L P Q GE+WL+GP++M+GY++NE+AT  
Sbjct:   353 DTVEESRRYGTAGKLSASMEGRIVDPVTGQILGPKQTGELWLKGPSIMKGYFSNEEATSS 412

Query:   194 TIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 232
             T+D +GW+ TGDL Y D DG ++VVDR+KELIKYKG+QV
Sbjct:   413 TLDSEGWLRTGDLCYIDEDGFIFVVDRLKELIKYKGYQV 451

GO:0003824 "catalytic activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0009698 "phenylpropanoid metabolic process" evidence=ISS

GO:0016207 "4-coumarate-CoA ligase activity" evidence=ISS

GO:0005777 "peroxisome" evidence=IDA

GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA;IMP

GO:0009611 "response to wounding" evidence=IEP;RCA

GO:0009620 "response to fungus" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

TAIR|locus:2158559 AT5G63380 [Arabidopsis thaliana (taxid:3702)]

 Score = 527 (190.6 bits), Expect = 1.1e-50, P = 1.1e-50
 Identities = 106/222 (47%), Positives = 149/222 (67%)

Query:    13 DYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLI 72
             D V L  LPLFHVFG  ++    +  G  ++L+ +F+LE   +A+EK++VT + V PPLI
Sbjct:   248 DRVGLFSLPLFHVFGFMMMIRA-ISLGETLVLLGRFELEAMFKAVEKYKVTGMPVSPPLI 306

Query:    73 LALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVGYGLTETSGIATM 132
             +AL K  L KK+DL SL+ +G G APLGK++ E   +  P   ++Q GYGLTE+SG A  
Sbjct:   307 VALVKSELTKKYDLRSLRSLGCGGAPLGKDIAERFKQKFPDVDIVQ-GYGLTESSGPAA- 364

Query:   133 ENSFAGSRNI--GSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQA 190
              ++F     +  GS G ++  +EA IV   T + LPP + GE+WLRGP +M+GY  NE+A
Sbjct:   365 -STFGPEEMVKYGSVGRISENMEAKIVDPSTGESLPPGKTGELWLRGPVIMKGYVGNEKA 423

Query:   191 TKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 232
             +  T+DK+GW+ TGDL YFD +  LY+VDR+KELIKYK +QV
Sbjct:   424 SAETVDKEGWLKTGDLCYFDSEDFLYIVDRLKELIKYKAYQV 465

GO:0003824 "catalytic activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0016207 "4-coumarate-CoA ligase activity" evidence=ISS

GO:0004321 "fatty-acyl-CoA synthase activity" evidence=IDA

GO:0005777 "peroxisome" evidence=IDA

GO:0009695 "jasmonic acid biosynthetic process" evidence=IDA

GO:0009850 "auxin metabolic process" evidence=IDA

GO:0009851 "auxin biosynthetic process" evidence=IDA

TAIR|locus:2034403 AT1G20500 [Arabidopsis thaliana (taxid:3702)]

 Score = 522 (188.8 bits), Expect = 3.6e-50, P = 3.6e-50
 Identities = 101/222 (45%), Positives = 147/222 (66%)

Query:    13 DYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLI 72
             D +F+C +P+FH +GL     G +  GS ++++ +F L   + A+EKHR T + + PP++
Sbjct:   237 DDIFICTVPMFHTYGLLTFAMGTVALGSTVVILRRFQLHDMMDAVEKHRATALALAPPVL 296

Query:    73 LALAKHG-LVK-KFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVGYGLTETSGIA 130
             +A+     L+K K+DLSSLK V  G APL KE+ E   +  P+  ++Q GY LTE++G  
Sbjct:   297 VAMINDADLIKAKYDLSSLKTVRCGGAPLSKEVTEGFLEKYPTVDILQ-GYALTESNGGG 355

Query:   131 TMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQA 190
                NS   SR  G+AG L   VEA IV  +T + +  NQ GE+WL+GP++ +GY+ N++A
Sbjct:   356 AFTNSAEESRRYGTAGTLTSDVEARIVDPNTGRFMGINQTGELWLKGPSISKGYFKNQEA 415

Query:   191 TKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 232
             T  TI+ +GW+ TGDL Y D DG L+VVDR+KELIKYKG+QV
Sbjct:   416 TNETINLEGWLKTGDLCYIDEDGFLFVVDRLKELIKYKGYQV 457

GO:0003824 "catalytic activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0009698 "phenylpropanoid metabolic process" evidence=ISS

GO:0016207 "4-coumarate-CoA ligase activity" evidence=ISS

TAIR|locus:2015003 4CL3 "4-coumarate:CoA ligase 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 516 (186.7 bits), Expect = 1.5e-49, P = 1.5e-49
 Identities = 101/221 (45%), Positives = 147/221 (66%)

Query:    15 VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILA 74
             V LCVLPLFH++ L  +    L+ G+ ++LM KF++   L  I++HRVT   +VPPL++A
Sbjct:   252 VILCVLPLFHIYSLNSVLLNSLRSGATVLLMHKFEIGALLDLIQRHRVTIAALVPPLVIA 311

Query:    75 LAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVGYGLTETSGIATMEN 134
             LAK+  V  +DLSS++ V SGAAPLGKEL +   + +P A + Q GYG+TE   + +M  
Sbjct:   312 LAKNPTVNSYDLSSVRFVLSGAAPLGKELQDSLRRRLPQAILGQ-GYGMTEAGPVLSMSL 370

Query:   135 SFAGS---RNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQAT 191
              FA        GS G +    E  +V ++T+  L  NQ GEI +RG  +M+ Y N+ +AT
Sbjct:   371 GFAKEPIPTKSGSCGTVVRNAELKVVHLETRLSLGYNQPGEICIRGQQIMKEYLNDPEAT 430

Query:   192 KLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 232
               TID++GW+HTGD+GY D D ++++VDR+KE+IK+KGFQV
Sbjct:   431 SATIDEEGWLHTGDIGYVDEDDEIFIVDRLKEVIKFKGFQV 471

GO:0003824 "catalytic activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0008152 "metabolic process" evidence=IEA

GO:0010584 "pollen exine formation" evidence=IMP

GO:0009411 "response to UV" evidence=IEP

GO:0009611 "response to wounding" evidence=IEP

GO:0009698 "phenylpropanoid metabolic process" evidence=TAS

GO:0016207 "4-coumarate-CoA ligase activity" evidence=IDA

GO:0050832 "defense response to fungus" evidence=IEP

GO:0009718 "anthocyanin-containing compound biosynthetic process" evidence=RCA

GO:0009744 "response to sucrose stimulus" evidence=RCA

GO:0009813 "flavonoid biosynthetic process" evidence=RCA

GO:0010224 "response to UV-B" evidence=RCA

TAIR|locus:2017602 4CL1 "4-coumarate:CoA ligase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 515 (186.3 bits), Expect = 2.0e-49, P = 2.0e-49
 Identities = 106/224 (47%), Positives = 147/224 (65%)

Query:    13 DYVFLCVLPLFHVFGL-AVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPL 71
             D V LCVLP+FH++ L +++ CG L+ G+ I++M KF++ + L  I++ +VT   +VPP+
Sbjct:   247 DDVILCVLPMFHIYALNSIMLCG-LRVGAAILIMPKFEINLLLELIQRCKVTVAPMVPPI 305

Query:    72 ILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVGYGLTETSGIAT 131
             +LA+AK    +K+DLSS+++V SGAAPLGKEL +      P+A + Q GYG+TE   +  
Sbjct:   306 VLAIAKSSETEKYDLSSIRVVKSGAAPLGKELEDAVNAKFPNAKLGQ-GYGMTEAGPVLA 364

Query:   132 MENSFAGSR---NIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNE 188
             M   FA        G+ G +    E  IV  DT   L  NQ GEI +RG  +M+GY NN 
Sbjct:   365 MSLGFAKEPFPVKSGACGTVVRNAEMKIVDPDTGDSLSRNQPGEICIRGHQIMKGYLNNP 424

Query:   189 QATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 232
              AT  TIDK GW+HTGD+G  D D +L++VDR+KELIKYKGFQV
Sbjct:   425 AATAETIDKDGWLHTGDIGLIDDDDELFIVDRLKELIKYKGFQV 468

GO:0003824 "catalytic activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008152 "metabolic process" evidence=IEA

GO:0009411 "response to UV" evidence=IEP

GO:0009611 "response to wounding" evidence=IEP;RCA

GO:0009620 "response to fungus" evidence=IEP

GO:0009698 "phenylpropanoid metabolic process" evidence=RCA;TAS

GO:0016207 "4-coumarate-CoA ligase activity" evidence=IDA

GO:0006598 "polyamine catabolic process" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009805 "coumarin biosynthetic process" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0042398 "cellular modified amino acid biosynthetic process" evidence=RCA

GO:0005737 "cytoplasm" evidence=IDA

TAIR|locus:2094716 4CL2 "4-coumarate:CoA ligase 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 513 (185.6 bits), Expect = 3.2e-49, P = 3.2e-49
 Identities = 104/223 (46%), Positives = 146/223 (65%)

Query:    13 DYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLI 72
             D V LCVLP+FH++ L  I    L+ G+ I++M KF++ + L  I++ +VT   VVPP++
Sbjct:   240 DDVILCVLPMFHIYALNSIMLCSLRVGATILIMPKFEITLLLEQIQRCKVTVAMVVPPIV 299

Query:    73 LALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVGYGLTETSGIATM 132
             LA+AK    +K+DLSS+++V SGAAPLGKEL +  +   P+A + Q GYG+TE   +  M
Sbjct:   300 LAIAKSPETEKYDLSSVRMVKSGAAPLGKELEDAISAKFPNAKLGQ-GYGMTEAGPVLAM 358

Query:   133 ENSFAGSR---NIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQ 189
                FA        G+ G +    E  I+  DT   LP N+ GEI +RG  +M+GY N+  
Sbjct:   359 SLGFAKEPFPVKSGACGTVVRNAEMKILDPDTGDSLPRNKPGEICIRGNQIMKGYLNDPL 418

Query:   190 ATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 232
             AT  TIDK GW+HTGD+G+ D D +L++VDR+KELIKYKGFQV
Sbjct:   419 ATASTIDKDGWLHTGDVGFIDDDDELFIVDRLKELIKYKGFQV 461

GO:0003824 "catalytic activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008152 "metabolic process" evidence=IEA

GO:0009411 "response to UV" evidence=IEP

GO:0009611 "response to wounding" evidence=IEP;RCA

GO:0009620 "response to fungus" evidence=IEP

GO:0009698 "phenylpropanoid metabolic process" evidence=TAS

GO:0016207 "4-coumarate-CoA ligase activity" evidence=IDA

GO:0009805 "coumarin biosynthetic process" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

TAIR|locus:2034423 AT1G20480 [Arabidopsis thaliana (taxid:3702)]

 Score = 504 (182.5 bits), Expect = 2.9e-48, P = 2.9e-48
 Identities = 95/218 (43%), Positives = 144/218 (66%)

Query:    17 LCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALA 76
             +C +P+ H+FG      G +  G  I+++ KFD+   L A+E HR +++ +VPP+++A+ 
Sbjct:   256 ICTIPMCHIFGFGGFATGLIALGWTIVVLPKFDMAKLLSAVETHRSSYLSLVPPIVVAMV 315

Query:    77 K--HGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVGYGLTETSGIATMEN 134
                + +  K+DLSSL  V +G APL +E+ E+  +N P   ++Q GYGLTE++ IA    
Sbjct:   316 NGANEINSKYDLSSLHTVVAGGAPLSREVTEKFVENYPKVKILQ-GYGLTESTAIAASMF 374

Query:   135 SFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQATKLT 194
             +   ++  G++G LAP VE  IV  DT + L  NQ GE+W+R P +M+GY+ N++AT  T
Sbjct:   375 NKEETKRYGASGLLAPNVEGKIVDPDTGRVLGVNQTGELWIRSPTVMKGYFKNKEATAST 434

Query:   195 IDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 232
             ID +GW+ TGDL Y DGDG ++VVDR+KELIK  G+QV
Sbjct:   435 IDSEGWLKTGDLCYIDGDGFVFVVDRLKELIKCNGYQV 472

GO:0003824 "catalytic activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0008152 "metabolic process" evidence=IEA

GO:0009698 "phenylpropanoid metabolic process" evidence=ISS

GO:0016207 "4-coumarate-CoA ligase activity" evidence=ISS

TAIR|locus:2117209 AT4G19010 [Arabidopsis thaliana (taxid:3702)]

 Score = 495 (179.3 bits), Expect = 2.6e-47, P = 2.6e-47
 Identities = 98/221 (44%), Positives = 146/221 (66%)

Query:    15 VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILA 74
             V+L  LPL H++GL++   G L  GS I++M +FD    +  IE+ ++TH  VVPP+++A
Sbjct:   252 VYLAALPLCHIYGLSLFVMGLLSLGSTIVVMKRFDASDVVNVIERFKITHFPVVPPMLMA 311

Query:    75 LAKH--GLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVGYGLTETSGIATM 132
             L K   G+  +    SLK V SGAAPL ++ +E+  + +P   +IQ GYG+TE++ + T 
Sbjct:   312 LTKKAKGVCGEV-FKSLKQVSSGAAPLSRKFIEDFLQTLPHVDLIQ-GYGMTESTAVGTR 369

Query:   133 E-NSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQAT 191
               NS   SR   S G LAP ++A +V   +   LPP   GE+W++GP +M+GY NN +AT
Sbjct:   370 GFNSEKLSR-YSSVGLLAPNMQAKVVDWSSGSFLPPGNRGELWIQGPGVMKGYLNNPKAT 428

Query:   192 KLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 232
             +++I +  W+ TGD+ YFD DG L++VDRIKE+IKYKGFQ+
Sbjct:   429 QMSIVEDSWLRTGDIAYFDEDGYLFIVDRIKEIIKYKGFQI 469

GO:0003824 "catalytic activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0016207 "4-coumarate-CoA ligase activity" evidence=ISS

GO:0006914 "autophagy" evidence=RCA

GO:0009610 "response to symbiotic fungus" evidence=RCA

ASPGD|ASPL0000006875 AN5990 [Emericella nidulans (taxid:162425)]

 Score = 487 (176.5 bits), Expect = 1.8e-46, P = 1.8e-46
 Identities = 97/220 (44%), Positives = 143/220 (65%)

Query:    17 LCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALA 76
             L  LP FH++GL  +    + KG  + +MAKFDLE + + ++ +R+T  +VVPP++L L 
Sbjct:   236 LAFLPFFHIYGLTCLVHQTIYKGYELFVMAKFDLEKWCQHVQNYRITFSYVVPPVVLLLG 295

Query:    77 KHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVGYGLTETSGIATMENSF 136
             KH +V+K+DLSSL+++ SGAAPL +EL+E     +     I+ GYGL+ETS     +   
Sbjct:   296 KHPIVEKYDLSSLRMMNSGAAPLTQELVEAVYNRLHIG--IKQGYGLSETSPTTHTQPWG 353

Query:   137 AGSRNIGSAGALAPGVEALIVSV--DTQKP--LPPNQLGEIWLRGPNMMRGYYNNEQATK 192
                 ++GS G L P +EA  +++  D  +P  +P  ++GE++LRGPN+ +GY+NN  AT 
Sbjct:   354 EWRESVGSVGKLLPNMEAKYMTMPEDGSEPTEVPTGEVGELYLRGPNVFQGYHNNPAATA 413

Query:   193 LTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 232
              +I   GW  TGD+GY D  G  Y+ DR+KELIKYKGFQV
Sbjct:   414 DSISPDGWFRTGDVGYQDSKGNFYITDRVKELIKYKGFQV 453

GO:0006631 "fatty acid metabolic process" evidence=RCA

GO:0004467 "long-chain fatty acid-CoA ligase activity" evidence=RCA

GO:0005575 "cellular_component" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9M0X9	4CLL7_ARATH	6, ., 2, ., 1, ., -	0.7025	0.9788	0.4246	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	6.2.1	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	236
cd05904	504	cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL)	1e-125
cd05911	487	cd05911, Firefly_Luc_like, Firefly luciferase of l	2e-95
PLN02246	537	PLN02246, PLN02246, 4-coumarate--CoA ligase	4e-79
cd05917	347	cd05917, FACL_like_2, Uncharacterized subfamily of	3e-76
cd05936	468	cd05936, FC-FACS_FadD_like, Prokaryotic long-chain	2e-71
PLN02574	560	PLN02574, PLN02574, 4-coumarate--CoA ligase-like	2e-71
cd05929	342	cd05929, BACL_like, Bacterial Bile acid CoA ligase	1e-70
COG0318	534	COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/	2e-67
pfam00501	412	pfam00501, AMP-binding, AMP-binding enzyme	4e-66
cd04433	338	cd04433, AFD_class_I, Adenylate forming domain, Cl	7e-64
PLN02330	546	PLN02330, PLN02330, 4-coumarate--CoA ligase-like 1	1e-58
PRK06187	521	PRK06187, PRK06187, long-chain-fatty-acid--CoA lig	2e-58
cd05935	430	cd05935, LC_FACS_like, Putative long-chain fatty a	1e-57
PRK07656	513	PRK07656, PRK07656, long-chain-fatty-acid--CoA lig	2e-56
cd05926	345	cd05926, FACL_fum10p_like, Subfamily of fatty acid	5e-54
PRK06710	563	PRK06710, PRK06710, long-chain-fatty-acid--CoA lig	5e-48
cd05907	456	cd05907, VL_LC_FACS_like, Long-chain fatty acid Co	4e-47
cd05912	407	cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase	4e-45
PRK08314	546	PRK08314, PRK08314, long-chain-fatty-acid--CoA lig	6e-44
TIGR03205	541	TIGR03205, pimA, dicarboxylate--CoA ligase PimA	7e-44
PRK03640	483	PRK03640, PRK03640, O-succinylbenzoic acid--CoA li	1e-43
cd05920	483	cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP l	3e-43
cd05922	350	cd05922, FACL_like_6, Uncharacterized subfamily of	8e-43
PRK08315	559	PRK08315, PRK08315, AMP-binding domain protein; Va	2e-40
COG1022	613	COG1022, FAA1, Long-chain acyl-CoA synthetases (AM	2e-40
cd05941	430	cd05941, MCS, Malonyl-CoA synthetase (MCS)	8e-40
PRK12583	558	PRK12583, PRK12583, acyl-CoA synthetase; Provision	3e-39
PRK06188	524	PRK06188, PRK06188, acyl-CoA synthetase; Validated	6e-38
PRK06839	496	PRK06839, PRK06839, acyl-CoA synthetase; Validated	2e-37
PRK05605	573	PRK05605, PRK05605, long-chain-fatty-acid--CoA lig	3e-37
PRK08316	523	PRK08316, PRK08316, acyl-CoA synthetase; Validated	2e-36
cd05909	489	cd05909, AAS_C, C-terminal domain of the acyl-acyl	3e-35
TIGR01923	436	TIGR01923, menE, O-succinylbenzoate-CoA ligase	2e-34
cd05934	421	cd05934, FACL_DitJ_like, Uncharacterized subfamily	3e-34
cd05931	547	cd05931, FAAL, Fatty acyl-AMP ligase (FAAL)	6e-34
PRK07529	632	PRK07529, PRK07529, AMP-binding domain protein; Va	7e-34
COG0365	528	COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fat	7e-34
cd05944	359	cd05944, FACL_like_4, Uncharacterized subfamily of	8e-34
PRK12406	509	PRK12406, PRK12406, long-chain-fatty-acid--CoA lig	1e-33
cd05903	437	cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA li	1e-33
cd05927	539	cd05927, LC-FACS_euk, Eukaryotic long-chain fatty	1e-33
PRK08974	560	PRK08974, PRK08974, long-chain-fatty-acid--CoA lig	3e-32
cd05932	504	cd05932, LC_FACS_bac, Bacterial long-chain fatty a	3e-32
PRK07786	542	PRK07786, PRK07786, long-chain-fatty-acid--CoA lig	3e-32
PRK08633	1146	PRK08633, PRK08633, 2-acyl-glycerophospho-ethanola	5e-32
cd12119	517	cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synth	5e-31
PRK08276	502	PRK08276, PRK08276, long-chain-fatty-acid--CoA lig	6e-31
PRK12492	562	PRK12492, PRK12492, long-chain-fatty-acid--CoA lig	2e-30
PRK09274	552	PRK09274, PRK09274, peptide synthase; Provisional	3e-30
PRK06145	497	PRK06145, PRK06145, acyl-CoA synthetase; Validated	4e-30
PRK06178	567	PRK06178, PRK06178, acyl-CoA synthetase; Validated	9e-30
PRK07788	549	PRK07788, PRK07788, acyl-CoA synthetase; Validated	1e-28
PRK07059	557	PRK07059, PRK07059, Long-chain-fatty-acid--CoA lig	6e-28
PRK08751	560	PRK08751, PRK08751, putative long-chain fatty acyl	7e-28
PRK05677	562	PRK05677, PRK05677, long-chain-fatty-acid--CoA lig	2e-27
PRK06164	540	PRK06164, PRK06164, acyl-CoA synthetase; Validated	2e-27
cd05933	594	cd05933, ACSBG_like, Bubblegum-like very long-chai	2e-27
PRK07514	504	PRK07514, PRK07514, malonyl-CoA synthase; Validate	3e-27
PRK07470	528	PRK07470, PRK07470, acyl-CoA synthetase; Validated	7e-27
cd05971	439	cd05971, MACS_like_3, Uncharacterized subfamily of	8e-27
PRK13391	511	PRK13391, PRK13391, acyl-CoA synthetase; Provision	3e-26
cd12118	520	cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synt	3e-26
PRK09088	488	PRK09088, PRK09088, acyl-CoA synthetase; Validated	5e-26
cd05906	560	cd05906, A_NRPS_TubE_like, The adenylation domain	1e-25
cd05945	447	cd05945, DltA, D-alanine:D-alanyl carrier protein	2e-25
PTZ00216	700	PTZ00216, PTZ00216, acyl-CoA synthetase; Provision	4e-25
COG1021	542	COG1021, EntE, Peptide arylation enzymes [Secondar	2e-24
cd05908	499	cd05908, A_NRPS_MycA_like, The adenylation domain	4e-24
PRK06087	547	PRK06087, PRK06087, short chain acyl-CoA synthetas	5e-24
cd05910	455	cd05910, FACL_like_1, Uncharacterized subfamily of	1e-23
PRK04319	570	PRK04319, PRK04319, acetyl-CoA synthetase; Provisi	2e-23
cd05972	430	cd05972, MACS_like, Medium-chain acyl-CoA syntheta	7e-23
TIGR01733	409	TIGR01733, AA-adenyl-dom, amino acid adenylation d	6e-22
TIGR02275	526	TIGR02275, DHB_AMP_lig, 2,3-dihydroxybenzoate-AMP	8e-22
PLN02736	651	PLN02736, PLN02736, long-chain acyl-CoA synthetase	2e-21
cd05914	448	cd05914, FACL_like_3, Uncharacterized subfamily of	2e-21
cd05930	445	cd05930, A_NRPS, The adenylation domain of nonribo	3e-21
cd05918	447	cd05918, A_NRPS_SidN3_like, The adenylation (A) do	4e-21
cd05969	443	cd05969, MACS_like_4, Uncharacterized subfamily of	5e-21
PRK08008	517	PRK08008, caiC, putative crotonobetaine/carnitine-	3e-20
PRK05852	534	PRK05852, PRK05852, acyl-CoA synthetase; Validated	4e-20
PRK07787	471	PRK07787, PRK07787, acyl-CoA synthetase; Validated	4e-20
cd05970	537	cd05970, MACS_AAE_MA_like, Medium-chain acyl-CoA s	2e-19
PLN02860	563	PLN02860, PLN02860, o-succinylbenzoate-CoA ligase	2e-19
PLN02430	660	PLN02430, PLN02430, long-chain-fatty-acid-CoA liga	4e-19
cd05919	436	cd05919, BCL_like, Benzoate CoA ligase (BCL) and s	9e-19
PRK07768	545	PRK07768, PRK07768, long-chain-fatty-acid--CoA lig	1e-18
cd05924	365	cd05924, FACL_like_5, Uncharacterized subfamily of	2e-18
PRK09192	579	PRK09192, PRK09192, acyl-CoA synthetase; Validated	2e-18
cd05959	506	cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and	3e-18
PRK06334	539	PRK06334, PRK06334, long chain fatty acid--[acyl-c	4e-18
PRK13382	537	PRK13382, PRK13382, acyl-CoA synthetase; Provision	5e-18
PLN02861	660	PLN02861, PLN02861, long-chain-fatty-acid-CoA liga	2e-17
PRK08162	545	PRK08162, PRK08162, acyl-CoA synthetase; Validated	2e-17
PRK06155	542	PRK06155, PRK06155, crotonobetaine/carnitine-CoA l	3e-17
PRK13295	547	PRK13295, PRK13295, cyclohexanecarboxylate-CoA lig	3e-17
cd05967	607	cd05967, PrpE, Propionyl-CoA synthetase (PrpE)	5e-16
PRK07798	533	PRK07798, PRK07798, acyl-CoA synthetase; Validated	6e-16
COG1020	642	COG1020, EntF, Non-ribosomal peptide synthetase mo	6e-16
PRK05691	4334	PRK05691, PRK05691, peptide synthase; Validated	9e-16
PRK07769	631	PRK07769, PRK07769, long-chain-fatty-acid--CoA lig	1e-15
PTZ00237	647	PTZ00237, PTZ00237, acetyl-CoA synthetase; Provisi	1e-15
cd05940	444	cd05940, FATP_FACS, Fatty acid transport proteins	2e-15
PRK13388	540	PRK13388, PRK13388, acyl-CoA synthetase; Provision	2e-15
cd05923	495	cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL)	3e-15
PRK07867	529	PRK07867, PRK07867, acyl-CoA synthetase; Validated	4e-15
cd05958	487	cd05958, ABCL, 2-aminobenzoate-CoA ligase (ABCL)	4e-15
TIGR02188	625	TIGR02188, Ac_CoA_lig_AcsA, acetate--CoA ligase	9e-15
TIGR03098	517	TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-form	1e-14
PLN02614	666	PLN02614, PLN02614, long-chain acyl-CoA synthetase	2e-14
PLN03102	579	PLN03102, PLN03102, acyl-activating enzyme; Provis	3e-14
PRK12476	612	PRK12476, PRK12476, putative fatty-acid--CoA ligas	6e-14
PRK10946	536	PRK10946, entE, enterobactin synthase subunit E; P	2e-13
cd05966	602	cd05966, ACS, Acetyl-CoA synthetase (also known as	3e-13
PLN02387	696	PLN02387, PLN02387, long-chain-fatty-acid-CoA liga	4e-13
cd05928	530	cd05928, MACS_euk, Eukaryotic Medium-chain acyl-Co	5e-13
PLN02479	567	PLN02479, PLN02479, acetate-CoA ligase	5e-13
PRK05850	578	PRK05850, PRK05850, acyl-CoA synthetase; Validated	6e-13
cd05973	440	cd05973, MACS_like_2, Uncharacterized subfamily of	6e-13
PRK13390	501	PRK13390, PRK13390, acyl-CoA synthetase; Provision	7e-13
cd05968	474	cd05968, AACS_like, Uncharacterized acyl-CoA synth	9e-13
cd05974	433	cd05974, MACS_like_1, Uncharacterized subfamily of	1e-12
cd05915	509	cd05915, ttLC_FACS_like, Fatty acyl-CoA synthetase	3e-12
PRK05851	525	PRK05851, PRK05851, long-chain-fatty-acid--[acyl-c	3e-12
TIGR03208	538	TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate	3e-12
PRK06814	1140	PRK06814, PRK06814, acylglycerophosphoethanolamine	3e-12
PRK05857	540	PRK05857, PRK05857, acyl-CoA synthetase; Validated	5e-12
PRK07638	487	PRK07638, PRK07638, acyl-CoA synthetase; Validated	8e-12
cd05937	468	cd05937, FATP_chFAT1_like, Uncharacterized subfami	4e-11
cd12117	474	cd12117, A_NRPS_Srf_like, The adenylation domain o	2e-10
PRK04813	503	PRK04813, PRK04813, D-alanine--poly(phosphoribitol	3e-10
PRK09029	458	PRK09029, PRK09029, O-succinylbenzoic acid--CoA li	4e-10
PRK08043	718	PRK08043, PRK08043, bifunctional acyl-[acyl carrie	6e-10
PRK07445	452	PRK07445, PRK07445, O-succinylbenzoic acid--CoA li	8e-10
PRK12582	624	PRK12582, PRK12582, acyl-CoA synthetase; Provision	9e-10
PRK06018	542	PRK06018, PRK06018, putative acyl-CoA synthetase;	1e-09
PRK07008	539	PRK07008, PRK07008, long-chain-fatty-acid--CoA lig	4e-09
PRK12316	5163	PRK12316, PRK12316, peptide synthase; Provisional	4e-09
PRK12316	5163	PRK12316, PRK12316, peptide synthase; Provisional	4e-09
PRK08180	614	PRK08180, PRK08180, feruloyl-CoA synthase; Reviewe	8e-09
PRK00174	637	PRK00174, PRK00174, acetyl-CoA synthetase; Provisi	1e-08
TIGR01734	502	TIGR01734, D-ala-DACP-lig, D-alanine--poly(phospho	1e-08
cd12115	449	cd12115, A_NRPS_Sfm_like, The adenylation domain o	3e-08
PTZ00342	746	PTZ00342, PTZ00342, acyl-CoA synthetase; Provision	5e-08
cd05921	559	cd05921, FCS, Feruloyl-CoA synthetase (FCS)	6e-08
cd12116	438	cd12116, A_NRPS_Ta1_like, The adenylation domain o	6e-08
cd12114	476	cd12114, A_NRPS_TlmIV_like, The adenylation domain	7e-08
PRK12467	3956	PRK12467, PRK12467, peptide synthase; Provisional	8e-08
PRK12316	5163	PRK12316, PRK12316, peptide synthase; Provisional	9e-08
cd05905	556	cd05905, Dip2, Disco-interacting protein 2 (Dip2)	3e-07
PRK12467	3956	PRK12467, PRK12467, peptide synthase; Provisional	2e-06
PRK03584	655	PRK03584, PRK03584, acetoacetyl-CoA synthetase; Pr	2e-06
PRK12467	3956	PRK12467, PRK12467, peptide synthase; Provisional	3e-06
PRK05620	576	PRK05620, PRK05620, long-chain-fatty-acid--CoA lig	3e-06
PRK13383	516	PRK13383, PRK13383, acyl-CoA synthetase; Provision	3e-06
cd05943	616	cd05943, AACS, Acetoacetyl-CoA synthetase (acetoac	4e-05
PRK05691	4334	PRK05691, PRK05691, peptide synthase; Validated	5e-05
PRK10524	629	PRK10524, prpE, propionyl-CoA synthetase; Provisio	6e-05
TIGR02262	508	TIGR02262, benz_CoA_lig, benzoate-CoA ligase famil	7e-05
PRK07824	358	PRK07824, PRK07824, O-succinylbenzoic acid--CoA li	2e-04
COG1541	438	COG1541, PaaK, Coenzyme F390 synthetase [Coenzyme	3e-04
PRK06060	705	PRK06060, PRK06060, acyl-CoA synthetase; Validated	5e-04
PRK08308	414	PRK08308, PRK08308, acyl-CoA synthetase; Validated	7e-04
PRK08279	600	PRK08279, PRK08279, long-chain-acyl-CoA synthetase	0.001
PRK12316	5163	PRK12316, PRK12316, peptide synthase; Provisional	0.002
pfam10978	175	pfam10978, DUF2785, Protein of unknown function (D	0.002

>gnl|CDD|213272 cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL)

 Score =  364 bits (936), Expect = e-125
 Identities = 128/232 (55%), Positives = 164/232 (70%), Gaps = 1/232 (0%)

Query: 1   MVTMDQETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKH 60
            +   +    + + V LCVLP+FH++GL VI    L+ G+ +++M +FDLE FL AIEK+
Sbjct: 189 QLVAGEGPNFDREDVTLCVLPMFHIYGLTVILLALLRLGATVVVMPRFDLEKFLAAIEKY 248

Query: 61  RVTHIWVVPPLILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVG 120
           +VTH+ VVPP++LAL KH +V K+DLSSLK +GSGAAPLGKEL E      P   + Q G
Sbjct: 249 KVTHLPVVPPIVLALVKHPIVDKYDLSSLKQIGSGAAPLGKELAEAFRARFPGVELGQ-G 307

Query: 121 YGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNM 180
           YG+TE+S + TM          GS G L P VEA IV  +T + LPPNQ GE+W+RGP +
Sbjct: 308 YGMTESSPVTTMCPVPEKDPKPGSVGRLVPNVEAKIVDPETGESLPPNQPGELWVRGPQV 367

Query: 181 MRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 232
           M+GY NN +AT  TIDK GW+HTGDLGYFD DG L++VDR+KELIKYKGFQV
Sbjct: 368 MKGYLNNPEATAETIDKDGWLHTGDLGYFDEDGYLFIVDRLKELIKYKGFQV 419

4-Coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 504

>gnl|CDD|213279 cd05911, Firefly_Luc_like, Firefly luciferase of light emitting insects and 4-Coumarate-CoA Ligase (4CL)

 Score =  287 bits (736), Expect = 2e-95
 Identities = 116/232 (50%), Positives = 152/232 (65%), Gaps = 4/232 (1%)

Query: 1   MVTMDQETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKH 60
           +    +      + V L  LP +H +GL   T   L  G+ +I+M KFD E FL+ IEK+
Sbjct: 178 VQDTLKGNPDSSNDVVLTFLPFYHAYGLT-TTLASLLCGATVIIMPKFDSETFLKLIEKY 236

Query: 61  RVTHIWVVPPLILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVG 120
           +VT +++VPP+ +ALAK  LV K+DLSSL+++ SGAAPL KEL EE  K  P+ T+ Q G
Sbjct: 237 KVTSLFLVPPIAVALAKSPLVDKYDLSSLRVIFSGAAPLSKELQEELRKRFPNTTIKQ-G 295

Query: 121 YGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNM 180
           YG+TET    T+          GS G L P VEA IV  D  K L PN+ GE+ ++GP +
Sbjct: 296 YGMTETGPATTLTPPGDEKP--GSVGRLVPNVEAKIVDEDGGKSLGPNERGELCVKGPQI 353

Query: 181 MRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 232
           M+GY NN +ATK TID+ GW+HTGD+GYFD DG  Y+VDR KELIKYKG+QV
Sbjct: 354 MKGYLNNPEATKETIDEDGWLHTGDIGYFDEDGNFYIVDRKKELIKYKGYQV 405

This family contains two functionally unique groups of proteins; one group is insect firefly luciferases and the other is plant 4-coumarate:coenzyme A ligases. However, they share significant sequence similarity in spite of their functional diversity. Luciferase catalyzes the production of light in the presence of MgATP, molecular oxygen, and luciferin. In the first step, luciferin is activated by acylation of its carboxylate group with ATP, resulting in an enzyme-bound luciferyl adenylate. In the second step, luciferyl adenylate reacts with molecular oxygen, producing an enzyme-bound excited state product (Luc=O*) and releasing AMP. This excited-state product then decays to the ground state (Luc=O), emitting a quantum of visible light. 4-coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and then the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 487

>gnl|CDD|215137 PLN02246, PLN02246, 4-coumarate--CoA ligase

 Score =  246 bits (631), Expect = 4e-79
 Identities = 111/224 (49%), Positives = 154/224 (68%), Gaps = 6/224 (2%)

Query: 13  DYVFLCVLPLFHVFGL-AVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPL 71
           D V LCVLP+FH++ L +V+ CG L+ G+ I++M KF++   L  I++H+VT    VPP+
Sbjct: 224 DDVILCVLPMFHIYSLNSVLLCG-LRVGAAILIMPKFEIGALLELIQRHKVTIAPFVPPI 282

Query: 72  ILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVGYGLTETSGIAT 131
           +LA+AK  +V+K+DLSS+++V SGAAPLGKEL +     +P+A + Q GYG+TE   +  
Sbjct: 283 VLAIAKSPVVEKYDLSSIRMVLSGAAPLGKELEDAFRAKLPNAVLGQ-GYGMTEAGPVLA 341

Query: 132 MENSFAGSR---NIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNE 188
           M  +FA        GS G +    E  IV  +T   LP NQ GEI +RGP +M+GY N+ 
Sbjct: 342 MCLAFAKEPFPVKSGSCGTVVRNAELKIVDPETGASLPRNQPGEICIRGPQIMKGYLNDP 401

Query: 189 QATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 232
           +AT  TIDK GW+HTGD+GY D D +L++VDR+KELIKYKGFQV
Sbjct: 402 EATANTIDKDGWLHTGDIGYIDDDDELFIVDRLKELIKYKGFQV 445

Length = 537

>gnl|CDD|213284 cd05917, FACL_like_2, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score =  233 bits (597), Expect = 3e-76
 Identities = 97/222 (43%), Positives = 130/222 (58%), Gaps = 9/222 (4%)

Query: 15  VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILA 74
             L  +PLFHVFGL +     L  G+ ++LM KFD    LR IE+ R+T +  VP + +A
Sbjct: 45  RTLVPVPLFHVFGLVLGVLASLTAGATLVLMEKFDPGAALRLIERERITALHGVPTMFIA 104

Query: 75  LAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVGYGLTETSGIATMEN 134
           L +H    KFDLSSL+   SG AP+  EL+    +  P A  I  GYG+TETSG+ T   
Sbjct: 105 LLEHPDFDKFDLSSLRTGISGGAPVPPELVRRIREEFPMA-EITTGYGMTETSGVGTQ-- 161

Query: 135 SFAGSRN----IGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQA 190
             +G        G+ G   PGVE  IV  D    +PP ++GEI +RG ++M+GYYN+ +A
Sbjct: 162 -TSGDDPYEDRPGTVGRPLPGVEVKIVDPDGG-EVPPGEVGEICVRGYSVMKGYYNDPEA 219

Query: 191 TKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 232
           T   ID  GW+HTGDLGY D DG L +V RIK++I   G  +
Sbjct: 220 TAEAIDADGWLHTGDLGYMDEDGYLRIVGRIKDMIIRGGENI 261

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 347

>gnl|CDD|213302 cd05936, FC-FACS_FadD_like, Prokaryotic long-chain fatty acid CoA synthetases similar to Escherichia coli FadD

 Score =  225 bits (575), Expect = 2e-71
 Identities = 92/218 (42%), Positives = 125/218 (57%), Gaps = 5/218 (2%)

Query: 15  VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILA 74
            FL  LPLFH+FGL V     L+ G+  +L+  F     L+ I+++R T    VP L  A
Sbjct: 170 RFLTALPLFHIFGLTVNMLLGLRLGATNVLVPNFRPINVLKEIKRYRFTIFPGVPTLYNA 229

Query: 75  LAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVGYGLTETSGIATMEN 134
           L  H   KK+D SSL+L  SG APL  E+ E   +    A +++ GYGLTETS + T+ N
Sbjct: 230 LLNHPEFKKYDFSSLRLCISGGAPLPVEVAER-FEEKTGAPLVE-GYGLTETSPVTTV-N 286

Query: 135 SFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQATKLT 194
              G R  GS G   PG E  IV  +    LPP ++GE+ +RGP +M+GY+N  + T   
Sbjct: 287 PLDGERKPGSIGLPLPGTEVKIVDDEGN-ELPPGEVGELVVRGPQVMKGYWNRPEETAEV 345

Query: 195 IDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 232
           +   GW+ TGD+GY D DG  Y+VDR K++I   GF V
Sbjct: 346 LT-DGWLRTGDIGYMDEDGYFYIVDRKKDMIIVGGFNV 382

This subfamily of the AMP-forming adenylation family contains Escherichia coli FadD and similar prokaryotic fatty acid CoA synthetases. FadD was characterized as a long-chain fatty acid CoA synthetase. The gene fadD is regulated by the fatty acid regulatory protein FadR. Fatty acid CoA synthetase catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, followed by the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 468

>gnl|CDD|215312 PLN02574, PLN02574, 4-coumarate--CoA ligase-like

 Score =  227 bits (580), Expect = 2e-71
 Identities = 99/221 (44%), Positives = 143/221 (64%), Gaps = 2/221 (0%)

Query: 13  DYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLI 72
           D V+L  LP+FH++GL++   G L  GS I++M +FD    ++ I++ +VTH  VVPP++
Sbjct: 244 DNVYLAALPMFHIYGLSLFVVGLLSLGSTIVVMRRFDASDMVKVIDRFKVTHFPVVPPIL 303

Query: 73  LALAKHGL-VKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVGYGLTETSGIAT 131
           +AL K    V    L SLK V  GAAPL  + +++  + +P    IQ GYG+TE++ + T
Sbjct: 304 MALTKKAKGVCGEVLKSLKQVSCGAAPLSGKFIQDFVQTLPHVDFIQ-GYGMTESTAVGT 362

Query: 132 MENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQAT 191
              +        S G LAP ++A +V   T   LPP   GE+W++GP +M+GY NN +AT
Sbjct: 363 RGFNTEKLSKYSSVGLLAPNMQAKVVDWSTGCLLPPGNCGELWIQGPGVMKGYLNNPKAT 422

Query: 192 KLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 232
           + TIDK GW+ TGD+ YFD DG LY+VDR+KE+IKYKGFQ+
Sbjct: 423 QSTIDKDGWLRTGDIAYFDEDGYLYIVDRLKEIIKYKGFQI 463

Length = 560

>gnl|CDD|213295 cd05929, BACL_like, Bacterial Bile acid CoA ligases and similar proteins

 Score =  219 bits (560), Expect = 1e-70
 Identities = 92/232 (39%), Positives = 127/232 (54%), Gaps = 5/232 (2%)

Query: 1   MVTMDQETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKH 60
            V            V+L   PL+H  G   +    L  G  ++LM KFD E  L  IE+H
Sbjct: 30  AVNALAGVDLSPGDVYLLAAPLYHAAGGLFLLPA-LAAGGTVVLMPKFDPEAVLDLIERH 88

Query: 61  RVTHIWVVPPLILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVG 120
           RVTH ++VP +   L +     ++DLSSL+L+  GAAP+  EL     +       +Q G
Sbjct: 89  RVTHTFLVPTMFQRLLRLPDFARYDLSSLRLIIYGAAPMPAELKRAMIE-WFGPVFVQ-G 146

Query: 121 YGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNM 180
           YG+TET    T+ +     R +GS G   PGVE  IV  D  + LPP ++GEI +RGP +
Sbjct: 147 YGMTETGPTTTLLSPEDWLRKLGSVGRPVPGVEVRIVDEDG-RELPPGEVGEIVVRGPAV 205

Query: 181 MRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 232
           M GY+N  +AT   + + GW+HTGDLGY D DG LY+VDR K++I   G  +
Sbjct: 206 MAGYWNRPEATAEAL-RDGWLHTGDLGYLDEDGYLYIVDRKKDMIISGGENI 256

Bile acid-Coenzyme A ligase catalyzes the formation of bile acid-CoA conjugates in a two-step reaction: the formation of a bile acid-AMP molecule as an intermediate, followed by the formation of a bile acid-CoA. This ligase requires a bile acid with a free carboxyl group, ATP, Mg2+, and CoA for synthesis of the final bile acid-CoA conjugate. The bile acid-CoA ligation is believed to be the initial step in the bile acid 7alpha-dehydroxylation pathway in the intestinal bacterium Eubacterium sp. Length = 342

>gnl|CDD|223395 COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]

 Score =  216 bits (551), Expect = 2e-67
 Identities = 96/219 (43%), Positives = 126/219 (57%), Gaps = 5/219 (2%)

Query: 15  VFLCVLPLFHVFGLAVITCGQLQKGSCIILM--AKFDLEMFLRAIEKHRVTHIWVVPPLI 72
           V L  LPLFH+FGL V     L  G  ++L+    FD E  L  IEK++VT +  VP  +
Sbjct: 216 VVLSWLPLFHIFGLIVGLLAPLLGGGTLVLLSPEPFDPEEVLWLIEKYKVTVLSGVPTFL 275

Query: 73  LALAKHGLVKKFDLSS-LKLVGSGAAPLGKELMEECAKNVPSATVIQVGYGLTETSGIAT 131
             L  +      DLSS L+LV SG APL  EL+E   +      +++ GYGLTETS + T
Sbjct: 276 RELLDNPEKDDDDLSSSLRLVLSGGAPLPPELLERFEERFGPIAILE-GYGLTETSPVVT 334

Query: 132 MENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQAT 191
           +          GS G   PGVE  IV  D  + LP  ++GEIW+RGPN+M+GY+N  +AT
Sbjct: 335 INPPDDLLAKPGSVGRPLPGVEVRIVDPDGGEVLP-GEVGEIWVRGPNVMKGYWNRPEAT 393

Query: 192 KLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGF 230
               D+ GW+ TGDLGY D DG LY+V R+K+LI   G 
Sbjct: 394 AEAFDEDGWLRTGDLGYVDEDGYLYIVGRLKDLIISGGE 432

Length = 534

>gnl|CDD|215954 pfam00501, AMP-binding, AMP-binding enzyme

 Score =  209 bits (535), Expect = 4e-66
 Identities = 79/222 (35%), Positives = 118/222 (53%), Gaps = 7/222 (3%)

Query: 15  VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDL--EMFLRAIEKHRVTHIWVVPPLI 72
             L +LPL     +  I    L  G  ++L+ KF L     L  IEK++VT ++ VP L+
Sbjct: 174 RVLLLLPLHFDGSVWEIFGP-LLAGGTLVLVPKFTLDPARLLDLIEKYKVTVLYGVPTLL 232

Query: 73  LALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVGYGLTETSGIATM 132
             L K    KK+DLSSL+LV SG  PL  EL+    +      ++  GYG TET+ +AT 
Sbjct: 233 RLLLKAPEEKKYDLSSLRLVLSGGEPLPPELLRRLRERFGGVPLVN-GYGPTETTVVATA 291

Query: 133 ENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQATK 192
                     GS G   PGVE  ++  + + P+PP ++GE+ +RGP + RGY N+ + T 
Sbjct: 292 NLPGDPEVKPGSIGRPLPGVEVKVLDEEGE-PVPPGEVGELCIRGPGVARGYLNDPELTA 350

Query: 193 LTIDKKGWV--HTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 232
               + GW    TGDLG +D DG L ++ R  + +K +G ++
Sbjct: 351 ERFVEDGWGMYRTGDLGRWDEDGYLEILGRKDDQVKIRGERI 392

Length = 412

>gnl|CDD|213270 cd04433, AFD_class_I, Adenylate forming domain, Class I

 Score =  201 bits (514), Expect = 7e-64
 Identities = 94/216 (43%), Positives = 127/216 (58%), Gaps = 5/216 (2%)

Query: 15  VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFD-LEMFLRAIEKHRVTHIWVVPPLIL 73
           V L VLPLFHV G      G L  G  ++L   F     FL  IE++RVT ++ VP L  
Sbjct: 43  VLLSVLPLFHVVGGGSGLLGALLAGGTVVLYEGFPFPLSFLELIEQYRVTVLFGVPTLYD 102

Query: 74  ALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVGYGLTETSGIATME 133
           ALAK    + +DLSSL+L+ SG  PL  EL+E   +  P A +++ GYGLTETS + +  
Sbjct: 103 ALAKAAEDRGYDLSSLRLLISGGEPLSPELLER-FEERPGAPILE-GYGLTETSVVTST- 159

Query: 134 NSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQATKL 193
           N  +  +  G+ G   PGVE  +V  +  KPLPP ++GE+ +RGP +M+GY+NN   T  
Sbjct: 160 NPDSELKKPGTVGRPVPGVEVRVVDEEG-KPLPPGEVGELVVRGPWVMKGYWNNPPETTA 218

Query: 194 TIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKG 229
              + GW  TGDLGY D +G LY+  R K+LIK  G
Sbjct: 219 AATEDGWYRTGDLGYLDEEGYLYITGRSKDLIKVGG 254

This family includes acyl- and aryl-CoA ligases, as well as the adenylation domain of nonribosomal peptide synthetases and firefly luciferases. The adenylate-forming enzymes catalyze an ATP-dependent two-step reaction to first activate a carboxylate substrate as an adenylate and then transfer the carboxylate to the pantetheine group of either coenzyme A or an acyl-carrier protein. The active site of the domain is located at the interface of a large N-terminal subdomain and a smaller C-terminal subdomain. Length = 338

>gnl|CDD|215189 PLN02330, PLN02330, 4-coumarate--CoA ligase-like 1

 Score =  193 bits (492), Expect = 1e-58
 Identities = 95/221 (42%), Positives = 134/221 (60%), Gaps = 6/221 (2%)

Query: 17  LCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALA 76
           L ++P FH++G+  I C  L+    +++M++F+L  FL A+    V+   +VPP+IL L 
Sbjct: 231 LGLIPFFHIYGITGICCATLRNKGKVVVMSRFELRTFLNALITQEVSFAPIVPPIILNLV 290

Query: 77  KHGLVKKFDLSSLKL--VGSGAAPLGKELMEECAKNVPSATVIQVGYGLTETSGIATMEN 134
           K+ +V++FDLS LKL  + + AAPL  EL+       P   V Q  YGLTE S I     
Sbjct: 291 KNPIVEEFDLSKLKLQAIMTAAAPLAPELLTAFEAKFPGVQV-QEAYGLTEHSCITLTHG 349

Query: 135 SFAGSRNIG---SAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQAT 191
                  I    S G + P +E   +  DT + LP N  GE+ +R   +M+GYYNN++ T
Sbjct: 350 DPEKGHGIAKKNSVGFILPNLEVKFIDPDTGRSLPKNTPGELCVRSQCVMQGYYNNKEET 409

Query: 192 KLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 232
             TID+ GW+HTGD+GY D DG +++VDRIKELIKYKGFQV
Sbjct: 410 DRTIDEDGWLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQV 450

Length = 546

>gnl|CDD|235730 PRK06187, PRK06187, long-chain-fatty-acid--CoA ligase; Validated

 Score =  192 bits (490), Expect = 2e-58
 Identities = 88/221 (39%), Positives = 122/221 (55%), Gaps = 11/221 (4%)

Query: 15  VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILA 74
           V+L ++P+FHV    +     L  G+  ++  +FD E  L  IE  RVT  + VP +   
Sbjct: 210 VYLVIVPMFHVHAWGLPYLA-LMAGAKQVIPRRFDPENLLDLIETERVTFFFAVPTIWQM 268

Query: 75  LAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVGYGLTETSGIATM-- 132
           L K       D SSL+LV  G A L   L+ E  +      ++Q GYG+TETS + ++  
Sbjct: 269 LLKAPRAYFVDFSSLRLVIYGGAALPPALLREFKE-KFGIDLVQ-GYGMTETSPVVSVLP 326

Query: 133 --ENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPN--QLGEIWLRGPNMMRGYYNNE 188
             +          SAG   PGVEA IV  D    LPP+  ++GEI +RGP +M+GY+N  
Sbjct: 327 PEDQLPGQWTKRRSAGRPLPGVEARIVD-DDGDELPPDGGEVGEIIVRGPWLMQGYWNRP 385

Query: 189 QATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKG 229
           +AT  TID  GW+HTGD+GY D DG LY+ DRIK++I   G
Sbjct: 386 EATAETID-GGWLHTGDVGYIDEDGYLYITDRIKDVIISGG 425

Length = 521

>gnl|CDD|213301 cd05935, LC_FACS_like, Putative long-chain fatty acid CoA ligase

 Score =  188 bits (479), Expect = 1e-57
 Identities = 76/221 (34%), Positives = 117/221 (52%), Gaps = 7/221 (3%)

Query: 15  VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILA 74
           V L  LPLFHV G+       +  G+ ++L+ ++D E   RAIE++RVTH   +  +++ 
Sbjct: 127 VLLAFLPLFHVAGMQGSMNAPIYTGATLVLLTRWDREAAARAIERYRVTHWTNIVTMVVD 186

Query: 75  LAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVGYGLTETSGIATMEN 134
           L  H     +DLSSLK+VG G A L   + E       +  + + GYGLTET        
Sbjct: 187 LLAHPRFADYDLSSLKVVGGGGAALPPAVAERLKA--LTGLLYEEGYGLTETHTCTHFNP 244

Query: 135 SFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQATK-- 192
                      G    G +A ++  +T + LPP + GEI +RGP + +GY+N  +AT   
Sbjct: 245 PDRPKP--QCLGIPVFGTDARVIDPETGEELPPGEEGEIVVRGPQVFKGYWNRPEATAES 302

Query: 193 -LTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 232
            + +D K +  TGDLGY D +G  + +DR+K +I   G++V
Sbjct: 303 FIELDGKRFFRTGDLGYIDEEGYFFFLDRVKRMINVSGYKV 343

The members of this family are putative long-chain fatty acyl-CoA synthetases, which catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. Length = 430

>gnl|CDD|236072 PRK07656, PRK07656, long-chain-fatty-acid--CoA ligase; Validated

 Score =  187 bits (476), Expect = 2e-56
 Identities = 84/220 (38%), Positives = 120/220 (54%), Gaps = 9/220 (4%)

Query: 17  LCVLPLFHVFGL--AVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILA 74
           L   P FHVFG    V     L +G+ I+ +  FD +   R IE  R+T +   P +  +
Sbjct: 211 LAANPFFHVFGYKAGVNAP--LMRGATILPLPVFDPDEVFRLIETERITVLPGPPTMYNS 268

Query: 75  LAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVGYGLTETSGIATMEN 134
           L +H      DLSSL+L  +GAA +   L+E     +    V+  GYGL+E SG+ T  N
Sbjct: 269 LLQHPDRSAEDLSSLRLAVTGAASMPVALLERFESELGVDIVLT-GYGLSEASGVTTF-N 326

Query: 135 SFAGSRNI--GSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQATK 192
                R    G+ G    GVE  IV+   +  +P  ++GE+ +RGPN+M+GYY++ +AT 
Sbjct: 327 RLDDDRKTVAGTIGTAIAGVENKIVNELGE-EVPVGEVGELLVRGPNVMKGYYDDPEATA 385

Query: 193 LTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 232
             ID  GW+HTGDLG  D +G LY+VDR K++    GF V
Sbjct: 386 AAIDADGWLHTGDLGRLDEEGYLYIVDRKKDMFIVGGFNV 425

Length = 513

>gnl|CDD|213292 cd05926, FACL_fum10p_like, Subfamily of fatty acid CoA ligase (FACL) similar to Fum10p of Gibberella moniliformis

 Score =  176 bits (449), Expect = 5e-54
 Identities = 79/213 (37%), Positives = 103/213 (48%), Gaps = 10/213 (4%)

Query: 17  LCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALA 76
           L V+PLFH+ GL V     L  G  ++   KF    F   I K+RVT    VP +   L 
Sbjct: 47  LNVMPLFHIHGLIVSLLATLLAGGSVVCPPKFSASKFWDDIAKYRVTWYSAVPTIHQILL 106

Query: 77  KHGLVKKFD-LSSLKLVGSGAAPLGKELMEECAK--NVPSATVIQVGYGLTETSGIATME 133
           K            L+ + S +APL   +++   K   VP    +   YG+TE +      
Sbjct: 107 KTAKPNPGKPPPRLRFIRSASAPLPPAVLDRLEKRFGVP----VLEAYGMTEAAHQIASN 162

Query: 134 NSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQATKL 193
                 R  GS G    GVE  I+  D + PLPP Q GEI +RGPN+  GY NN +A + 
Sbjct: 163 PLPPLVRKPGSVG-RPAGVEVAILDDDGR-PLPPGQEGEIVIRGPNVTAGYLNNPEANR- 219

Query: 194 TIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIK 226
              + GW  TGDLGY D DG L++  RIKELI 
Sbjct: 220 EAFRDGWFRTGDLGYLDEDGYLFLTGRIKELIN 252

FACL catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, followed by the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Fum10p is a fatty acid CoA ligase involved in the synthesis of fumonisin, a polyketide mycotoxin, in Gibberella moniliformis. Length = 345

>gnl|CDD|180666 PRK06710, PRK06710, long-chain-fatty-acid--CoA ligase; Validated

 Score =  165 bits (419), Expect = 5e-48
 Identities = 90/222 (40%), Positives = 139/222 (62%), Gaps = 4/222 (1%)

Query: 11  ELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPP 70
           E + V L VLP FHV+G+  +    + +G  ++L+ KFD++M   AI+KH+VT     P 
Sbjct: 247 EGEEVVLGVLPFFHVYGMTAVMNLSIMQGYKMVLIPKFDMKMVFEAIKKHKVTLFPGAPT 306

Query: 71  LILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVGYGLTETSGIA 130
           + +AL    L+K++D+SS++   SG+APL  E+ E+  + V    +++ GYGLTE+S + 
Sbjct: 307 IYIALLNSPLLKEYDISSIRACISGSAPLPVEVQEK-FETVTGGKLVE-GYGLTESSPV- 363

Query: 131 TMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQA 190
           T  N     R  GS G   P  EA+I+S++T + LPP ++GEI ++GP +M+GY+N  + 
Sbjct: 364 THSNFLWEKRVPGSIGVPWPDTEAMIMSLETGEALPPGEIGEIVVKGPQIMKGYWNKPEE 423

Query: 191 TKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 232
           T   + + GW+HTGD+GY D DG  YV DR K++I   GF V
Sbjct: 424 TAAVL-QDGWLHTGDVGYMDEDGFFYVKDRKKDMIVASGFNV 464

Length = 563

>gnl|CDD|213275 cd05907, VL_LC_FACS_like, Long-chain fatty acid CoA synthetases and Bubblegum-like very long-chain fatty acid CoA synthetases

 Score =  161 bits (410), Expect = 4e-47
 Identities = 81/229 (35%), Positives = 112/229 (48%), Gaps = 34/229 (14%)

Query: 13  DYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPL- 71
               L  LPL HVF   +     L  G+ +        E  L  + + R T  + VP + 
Sbjct: 129 GDRVLSFLPLAHVFEQRLGEYLPLSSGARVNFAE--SPETLLEDLREVRPTVFFAVPRVW 186

Query: 72  ------ILA-LAKHGLVKK--FD----LSSLKLVGSGAAPLGKELMEECAK-NVPSATVI 117
                 I A +A  G +K+  F        L+   SG APL  E++E      +P   ++
Sbjct: 187 EKIYAGIEAKVAAAGPLKRKLFRWALGGGRLRFAVSGGAPLPPEVLEFFRALGIP---IL 243

Query: 118 QVGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRG 177
           + GYGLTETSG+AT+  +  G   IG+ G   PGVE  I              GEI +RG
Sbjct: 244 E-GYGLTETSGVATV--NRPGDIRIGTVGKPLPGVEVRIAED-----------GEILVRG 289

Query: 178 PNMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIK 226
           PN+M+GYY N +AT   +D+ GW+HTGD+G  D DG L + DR K+LI 
Sbjct: 290 PNVMKGYYKNPEATAEALDEDGWLHTGDIGRLDEDGFLVITDRKKDLIV 338

This family includes long-chain fatty acid (C12-C20) CoA synthetases and Bubblegum-like very long-chain (>C20) fatty acid CoA synthetases. FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Eukaryotes generally have multiple isoforms of LC-FACS genes with multiple splice variants. For example, nine genes are found in Arabidopsis and six genes are expressed in mammalian cells. Drosophila melanogaster mutant bubblegum (BGM) have elevated levels of very-long-chain fatty acids (VLCFA) caused by a defective gene later named bubblegum. The human homolog (hsBG) of bubblegum has been characterized as a very long chain fatty acid CoA synthetase that functions specifically in the brain; hsBG may play a central role in brain VLCFA metabolism and myelinogenesis. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 456

>gnl|CDD|213280 cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase (also known as O-succinylbenzoate-CoA synthase, OSB-CoA synthetase, or MenE)

 Score =  155 bits (393), Expect = 4e-45
 Identities = 84/213 (39%), Positives = 108/213 (50%), Gaps = 24/213 (11%)

Query: 17  LCVLPLFHVFGLAVIT-CGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPP-LILA 74
           L  LPLFHV GLA++     L  G  ++L  KFD E    A+E H VTHI +VP  L   
Sbjct: 122 LLSLPLFHVSGLAIVMRS--LLAGGALVLPDKFDAEAIAEALENHGVTHISLVPTQLQRL 179

Query: 75  LAKHGLVKKFDLSSLKLVGSGAAPLGKELMEEC-AKNVPSATVIQVGYGLTET-SGIATM 132
           L   G      LSSL+ V  G AP+   L+E+   + +P        YG+TET S +AT+
Sbjct: 180 LESLG---ARWLSSLRAVLLGGAPIPPSLLEQARQRGIPLYP----TYGMTETASQVATL 232

Query: 133 ENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQATK 192
           +        +GS G   PG E  IV           Q GEI +RGP++  GY      T 
Sbjct: 233 KPDDF-LAKLGSVGKPLPGRELRIV---------NPQDGEILVRGPSLFLGYLPQGGLTP 282

Query: 193 LTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELI 225
              D+ GW HTGDLGY D +G LYV+ R  +LI
Sbjct: 283 PL-DEDGWFHTGDLGYLDAEGYLYVLGRRDDLI 314

O-succinylbenzoic acid-CoA synthase catalyzes the coenzyme A (CoA)- and ATP-dependent conversion of o-succinylbenzoic acid to o-succinylbenzoyl-CoA. The reaction is the fourth step of the biosynthesis pathway of menaquinone (vitamin K2). In certain bacteria, menaquinone is used during fumarate reduction in anaerobic respiration. In cyanobacteria, the product of the menaquinone pathway is phylloquinone (2-methyl-3-phytyl-1,4-naphthoquinone), a molecule used exclusively as an electron transfer cofactor in Photosystem 1. In green sulfur bacteria and heliobacteria, menaquinones are used as loosely bound secondary electron acceptors in the photosynthetic reaction center. Length = 407

>gnl|CDD|236235 PRK08314, PRK08314, long-chain-fatty-acid--CoA ligase; Validated

 Score =  154 bits (391), Expect = 6e-44
 Identities = 82/243 (33%), Positives = 119/243 (48%), Gaps = 51/243 (20%)

Query: 15  VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPP--LI 72
           V L VLPLFHV G+       +  G+ ++LM ++D E   R IE++RVTH W   P  ++
Sbjct: 233 VVLAVLPLFHVTGMVHSMNAPIYAGATVVLMPRWDREAAARLIERYRVTH-WTNIPTMVV 291

Query: 73  LALAKHGLVKKFDLSSLKLVGSGAAPL----GKELMEECAKNVPSATVIQVGYGLTETS- 127
             LA  GL  + DLSSL+ +G G A +     + L E    +         GYGLTET  
Sbjct: 292 DFLASPGL-AERDLSSLRYIGGGGAAMPEAVAERLKELTGLD------YVEGYGLTETMA 344

Query: 128 ---------------GIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGE 172
                          GI T                   GV+A ++  +T + LPP ++GE
Sbjct: 345 QTHSNPPDRPKLQCLGIPTF------------------GVDARVIDPETLEELPPGEVGE 386

Query: 173 IWLRGPNMMRGYYNNEQATK---LTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKG 229
           I + GP + +GY+N  +AT    + ID K +  TGDLG  D +G  ++ DR+K +I   G
Sbjct: 387 IVVHGPQVFKGYWNRPEATAEAFIEIDGKRFFRTGDLGRMDEEGYFFITDRLKRMINASG 446

Query: 230 FQV 232
           F+V
Sbjct: 447 FKV 449

Length = 546

>gnl|CDD|132249 TIGR03205, pimA, dicarboxylate--CoA ligase PimA

 Score =  154 bits (390), Expect = 7e-44
 Identities = 88/229 (38%), Positives = 131/229 (57%), Gaps = 6/229 (2%)

Query: 5   DQETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTH 64
            + T G+++ V +CVLPLFH++ L VI    L++G  I L  +FD+    R IE+ R T 
Sbjct: 231 SRATRGDVERV-ICVLPLFHIYALTVILLRSLRRGDLISLHQRFDVAAVFRDIEEKRATV 289

Query: 65  IWVVPPLILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVGYGLT 124
              VP + +ALA    ++K DLSSL  +GSG APL  E+     +       ++ G+G+T
Sbjct: 290 FPGVPTMWIALANDPSLEKRDLSSLATIGSGGAPLPVEVANFFERKT--GLKLKSGWGMT 347

Query: 125 ETSGIATMENSFAGSRNIGSAGALAPGVEALIVSV-DTQKPLPPNQLGEIWLRGPNMMRG 183
           ET    T  +   G    GS G + PG+E  +VS+ D  K LPP ++GE+ +RGPN+ RG
Sbjct: 348 ETCSPGT-GHPPEGPDKPGSIGLMLPGIELDVVSLDDPTKVLPPGEVGELRIRGPNVTRG 406

Query: 184 YYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 232
           Y+N  + +        ++ TGD+GY D DG  ++VDR K++I   GF V
Sbjct: 407 YWNRPEESAEAFVGDRFL-TGDIGYMDTDGYFFLVDRKKDMIISGGFNV 454

PimA, a member of a large family of acyl-CoA ligases, is found in a characteristic operon pimFABCDE for the metabolism of pimelate and related compounds. It is found, so far, in Bradyrhizobium japonicum and several strains of Rhodopseudomonas palustris. PimA from R. palustris was shown to be active as a CoA ligase for C(7) to C(14) dicarboxylates and fatty acids. Length = 541

>gnl|CDD|235146 PRK03640, PRK03640, O-succinylbenzoic acid--CoA ligase; Provisional

 Score =  152 bits (387), Expect = 1e-43
 Identities = 82/218 (37%), Positives = 120/218 (55%), Gaps = 26/218 (11%)

Query: 17  LCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALA 76
           L  +P+FH+ GL+ I    +  G  ++L+ KFD E   + ++   VT I VV  ++    
Sbjct: 186 LAAVPIFHISGLS-ILMRSVIYGMRVVLVEKFDAEKINKLLQTGGVTIISVVSTML---- 240

Query: 77  KHGLVKKFDL----SSLK--LVGSGAAPLGKELMEEC-AKNVPSATVIQVGYGLTET-SG 128
              L+++       SS +  L+G G AP  K L+E+C  K +P   V Q  YG+TET S 
Sbjct: 241 -QRLLERLGEGTYPSSFRCMLLGGGPAP--KPLLEQCKEKGIP---VYQ-SYGMTETASQ 293

Query: 129 IATMENSFAGSRNIGSAG-ALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNN 187
           I T+    A ++ +GSAG  L P  E  I        +PP + GEI ++GPN+ +GY N 
Sbjct: 294 IVTLSPEDALTK-LGSAGKPLFP-CELKIE--KDGVVVPPFEEGEIVVKGPNVTKGYLNR 349

Query: 188 EQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELI 225
           E AT+ T  + GW  TGD+GY D +G LYV+DR  +LI
Sbjct: 350 EDATRETF-QDGWFKTGDIGYLDEEGFLYVLDRRSDLI 386

Length = 483

>gnl|CDD|213287 cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP ligase

 Score =  151 bits (384), Expect = 3e-43
 Identities = 67/221 (30%), Positives = 101/221 (45%), Gaps = 4/221 (1%)

Query: 15  VFLCVLPLFHVFGLA-VITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLIL 73
           V+L VLP  H F L+     G L  G  ++L      ++    IE+ +VTH  +VP L+ 
Sbjct: 182 VYLAVLPAAHNFTLSSPGLLGALLAGGTVVLHHPPSPDVAFPLIEREKVTHTALVPALLN 241

Query: 74  ALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVGYGLTETSGIATME 133
              +     + DLSSL+++  G APL  EL     +      + QV +G+ E     T  
Sbjct: 242 LWLEAAEWDQADLSSLRVIQVGGAPLSPELARR-VEERLGCPLQQV-FGMAEGLVNYTRL 299

Query: 134 NSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQATKL 193
           +             ++P  E  IV    + P+PP ++GE+  RGP  +RGYY   +    
Sbjct: 300 DDPPDVIMRTQGRPISPADEIRIVDDQGE-PVPPGEVGELLTRGPYTIRGYYRAPEHNAR 358

Query: 194 TIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTS 234
                G+  TGDL   D DG   VV RIK+ I   G +++ 
Sbjct: 359 AFTDDGFYRTGDLVRIDADGYYRVVGRIKDQINRGGEKISP 399

2,3-dihydroxybenzoate-AMP ligase activates 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate. However, it can also catalyze the ATP-PPi exchange for 2,3-DHB analogs, such as salicyclic acid (o-hydrobenzoate), as well as 2,4-DHB and 2,5-DHB, but with less efficiency. Proteins in this family are the stand-alone adenylation components of non-ribosomal peptide synthases (NRPSs) involved in the biosynthesis of siderophores, which are low molecular weight iron-chelating compounds synthesized by many bacteria to aid in the acquisition of this vital trace elements. In Escherichia coli, the 2,3-dihydroxybenzoate-AMP ligase is called EntE, the adenylation component of the enterobactin NRPS system. Length = 483

>gnl|CDD|213289 cd05922, FACL_like_6, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score =  147 bits (374), Expect = 8e-43
 Identities = 61/226 (26%), Positives = 104/226 (46%), Gaps = 10/226 (4%)

Query: 13  DYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDL-EMFLRAIEKHRVTHIWVVPPL 71
           D   L VLP    +GL+ +     + G  ++L ++F      L+ + K R+T    VP  
Sbjct: 43  DDRILAVLPFSFDYGLSQLLT-AFRVGGTLVLESRFAFPRDVLKHLAKERITGFAGVPTT 101

Query: 72  ILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVGYGLTETSGIAT 131
              L +   + + D  SL+ + +    L  + + +  +  P A  +   YGLTE      
Sbjct: 102 WAQLLRLDPLAREDFPSLRYLTNAGGALPAKTILQLRRAFPDAK-LFSMYGLTEAFRSTY 160

Query: 132 MENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQAT 191
           +       R   S G   P VE  +V  +      P ++GE+  RG N+M+GY+N+ +AT
Sbjct: 161 LPPEELDRR-PDSIGKAIPNVELWVVD-EDGNRCAPGEVGELVHRGANVMKGYWNDPEAT 218

Query: 192 K-----LTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 232
                   +  +  ++TGDL   D +G LY V R  ++IK +G++V
Sbjct: 219 AERLRPGPLPGEIVLYTGDLVRMDEEGYLYFVGRKDDMIKTRGYRV 264

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 350

>gnl|CDD|236236 PRK08315, PRK08315, AMP-binding domain protein; Validated

 Score =  144 bits (367), Expect = 2e-40
 Identities = 72/225 (32%), Positives = 121/225 (53%), Gaps = 18/225 (8%)

Query: 10  GELDYVFLCVLPLFHVFG--LAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIW 66
            E D + + V PL+H FG  L  + C  +  G+ ++     FD    L A+E+ R T ++
Sbjct: 238 TEEDRLCIPV-PLYHCFGMVLGNLAC--VTHGATMVYPGEGFDPLATLAAVEEERCTALY 294

Query: 67  VVPPLILALAKHGLVKKFDLSSLK---LVGSGAAPLGKELMEECAKNVPSATVIQVGYGL 123
            VP + +A   H    +FDLSSL+   + GS   P   E+M+     +   + + + YG+
Sbjct: 295 GVPTMFIAELDHPDFARFDLSSLRTGIMAGS---PCPIEVMKRVIDKM-HMSEVTIAYGM 350

Query: 124 TETSGIATM---ENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNM 180
           TETS ++T    ++     + + + G   P +E  IV  +T + +P  + GE+  RG ++
Sbjct: 351 TETSPVSTQTRTDDPLE--KRVTTVGRALPHLEVKIVDPETGETVPRGEQGELCTRGYSV 408

Query: 181 MRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELI 225
           M+GY+N+ + T   ID  GW+HTGDL   D +G + +V RIK++I
Sbjct: 409 MKGYWNDPEKTAEAIDADGWMHTGDLAVMDEEGYVNIVGRIKDMI 453

Length = 559

>gnl|CDD|223953 COG1022, FAA1, Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism]

 Score =  145 bits (368), Expect = 2e-40
 Identities = 72/262 (27%), Positives = 100/262 (38%), Gaps = 70/262 (26%)

Query: 15  VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPL--- 71
             L  LPL H+F  A      L     + ++ K D    L  +++ R T +  VP +   
Sbjct: 235 RVLSFLPLAHIFERAFEGGLAL--YGGVTVLFKEDPRTLLEDLKEVRPTVMIGVPRVWEK 292

Query: 72  ------------------ILALAKHGLVKKFDLS-------------------------- 87
                             +   A     KK   +                          
Sbjct: 293 VYKGIMEKVAKAPAVRRKLFRWALKVAYKKISRALLGGGPLSWLLVADRLVFRKIRDALG 352

Query: 88  -SLKLVGSGAAPLGKELMEECAKNVPSATVIQV--GYGLTETSGIATMENSFAGSRNIGS 144
             ++   SG APL  EL+         +  I +  GYGLTETS + ++ N       +G+
Sbjct: 353 GRIRYALSGGAPLSPELLHFF-----RSLGIPILEGYGLTETSAVVSV-NPP-DRFVLGT 405

Query: 145 AGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQATKLTIDKKGWVHTG 204
            G   PG+E  I              GEI +RGPN+M+GYY N +AT     + GW  TG
Sbjct: 406 VGKPLPGIEVKIADD-----------GEILVRGPNVMKGYYKNPEATAEAFTEDGWFRTG 454

Query: 205 DLGYFDGDGQLYVVDRIKELIK 226
           DLG  D DG L +  R KELIK
Sbjct: 455 DLGELDEDGYLVITGRKKELIK 476

Length = 613

>gnl|CDD|213307 cd05941, MCS, Malonyl-CoA synthetase (MCS)

 Score =  141 bits (358), Expect = 8e-40
 Identities = 72/222 (32%), Positives = 105/222 (47%), Gaps = 8/222 (3%)

Query: 15  VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILA 74
           V L  LPL HV GL       L  G+ +  + +FD +         R+T    VP +   
Sbjct: 131 VLLHALPLHHVHGLFNALHCPLWAGASVEFLPRFDPQERDALRLLPRITVFMGVPTIYTR 190

Query: 75  LAKH---GLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVGYGLTETSGIAT 131
           L +H            +L+L  SG+A L   ++E   +   +   +   YG+TET G+A 
Sbjct: 191 LLEHYEFDDAAAAAARNLRLFVSGSAALPVPVLERWEER--TGHTLLERYGMTET-GMAL 247

Query: 132 MENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQAT 191
             N   G R  G+ G   PGVE  IV  D  +PL   ++GEI +RGPN+   Y+N  +AT
Sbjct: 248 -SNPLDGERRPGTVGLPLPGVEVRIVDEDGGEPLAAGEVGEIQVRGPNVFSEYWNKPEAT 306

Query: 192 KLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKEL-IKYKGFQV 232
                + GW  TGD+G  D DG   ++ R  +  IK  G++V
Sbjct: 307 AEAFTEDGWFKTGDVGVVDEDGYYRILGRKSDDIIKSGGYKV 348

MCS catalyzes the formation of malonyl-CoA in a two-step reaction consisting of the adenylation of malonate with ATP, followed by malonyl transfer from malonyl-AMP to CoA. Malonic acid and its derivatives are the building blocks of polyketides and malonyl-CoA serves as the substrate of polyketide synthases. Malonyl-CoA synthetase has broad substrate tolerance and can activate a variety of malonyl acid derivatives. MCS may play an important role in biosynthesis of polyketides, the important secondary metabolites with therapeutic and agrochemical utility. Length = 430

>gnl|CDD|237145 PRK12583, PRK12583, acyl-CoA synthetase; Provisional

 Score =  142 bits (359), Expect = 3e-39
 Identities = 73/214 (34%), Positives = 118/214 (55%), Gaps = 9/214 (4%)

Query: 17  LCV-LPLFHVFGLAVITCGQLQKGSCIILMAK-FDLEMFLRAIEKHRVTHIWVVPPLILA 74
           LCV +PL+H FG+ +   G +  G+C++   + FD    L+A+E+ R T ++ VP + +A
Sbjct: 245 LCVPVPLYHCFGMVLANLGCMTVGACLVYPNEAFDPLATLQAVEEERCTALYGVPTMFIA 304

Query: 75  LAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVGYGLTETSGIA---T 131
              H     FDLSSL+      AP   E+M      +     +Q+ YG+TETS ++   T
Sbjct: 305 ELDHPQRGNFDLSSLRTGIMAGAPCPIEVMRRVMDEM-HMAEVQIAYGMTETSPVSLQTT 363

Query: 132 MENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQAT 191
             +     R + + G   P +E  +V  D    +P  ++GE+  RG ++M+GY+NN +AT
Sbjct: 364 AADDL--ERRVETVGRTQPHLEVKVVDPDGAT-VPRGEIGELCTRGYSVMKGYWNNPEAT 420

Query: 192 KLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELI 225
             +ID+ GW+HTGDL   D  G + +V R K++I
Sbjct: 421 AESIDEDGWMHTGDLATMDEQGYVRIVGRSKDMI 454

Length = 558

>gnl|CDD|235731 PRK06188, PRK06188, acyl-CoA synthetase; Validated

 Score =  138 bits (349), Expect = 6e-38
 Identities = 81/240 (33%), Positives = 122/240 (50%), Gaps = 14/240 (5%)

Query: 1   MVTMDQETAGELDY----VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRA 56
           + TM Q    E ++     FL   PL H  G   +    L +G  +I++AKFD    LRA
Sbjct: 193 IATMAQIQLAEWEWPADPRFLMCTPLSHAGGAFFLPT--LLRGGTVIVLAKFDPAEVLRA 250

Query: 57  IEKHRVTHIWVVPPLILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATV 116
           IE+ R+T  ++VP +I AL  H  ++  DLSSL+ V  GA+P+    + E A        
Sbjct: 251 IEEQRITATFLVPTMIYALLDHPDLRTRDLSSLETVYYGASPMSPVRLAE-AIERFGPIF 309

Query: 117 IQVGYGLTET-SGIATM---ENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGE 172
            Q  YG TE    I  +   ++     + + S G   PG+   ++  D +  +   ++GE
Sbjct: 310 AQY-YGQTEAPMVITYLRKRDHDPDDPKRLTSCGRPTPGLRVALLDEDGR-EVAQGEVGE 367

Query: 173 IWLRGPNMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 232
           I +RGP +M GY+N  + T     + GW+HTGD+   D DG  Y+VDR K++I   GF V
Sbjct: 368 ICVRGPLVMDGYWNRPEETAEAF-RDGWLHTGDVAREDEDGFYYIVDRKKDMIVTGGFNV 426

Length = 524

>gnl|CDD|168698 PRK06839, PRK06839, acyl-CoA synthetase; Validated

 Score =  136 bits (343), Expect = 2e-37
 Identities = 72/207 (34%), Positives = 110/207 (53%), Gaps = 5/207 (2%)

Query: 19  VLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKH 78
           +LPLFH+ G+ +     L  G  II+  KF+    L  IEKH+VT +  VP +  AL   
Sbjct: 196 LLPLFHIGGIGLFAFPTLFAGGVIIVPRKFEPTKALSMIEKHKVTVVMGVPTIHQALINC 255

Query: 79  GLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVGYGLTETSGIATMENSFAG 138
              +  +L S++   +G AP  +ELM E         +   G+G+TETS    M +    
Sbjct: 256 SKFETTNLQSVRWFYNGGAPCPEELMREFIDR---GFLFGQGFGMTETSPTVFMLSEEDA 312

Query: 139 SRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQATKLTIDKK 198
            R +GS G      +  ++  +  K +   ++GE+ +RGPN+M+ Y+N   AT+ TI + 
Sbjct: 313 RRKVGSIGKPVLFCDYELIDENKNK-VEVGEVGELLIRGPNVMKEYWNRPDATEETI-QD 370

Query: 199 GWVHTGDLGYFDGDGQLYVVDRIKELI 225
           GW+ TGDL   D DG +Y+V R KE+I
Sbjct: 371 GWLCTGDLARVDEDGFVYIVGRKKEMI 397

Length = 496

>gnl|CDD|235531 PRK05605, PRK05605, long-chain-fatty-acid--CoA ligase; Validated

 Score =  136 bits (345), Expect = 3e-37
 Identities = 77/228 (33%), Positives = 117/228 (51%), Gaps = 13/228 (5%)

Query: 10  GELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVP 69
           G+     L  LP+FH +GL +     +  G  ++L+   D+++ L A++KH  T +  VP
Sbjct: 259 GDGPERVLAALPMFHAYGLTLCLTLAVSIGGELVLLPAPDIDLILDAMKKHPPTWLPGVP 318

Query: 70  PL---ILALA-KHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVGYGLTE 125
           PL   I   A + G+    DLS ++   SGA  L    +E   K +    +++ GYGLTE
Sbjct: 319 PLYEKIAEAAEERGV----DLSGVRNAFSGAMALPVSTVELWEK-LTGGLLVE-GYGLTE 372

Query: 126 TSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDT-QKPLPPNQLGEIWLRGPNMMRGY 184
           TS I  + N  +  R  G  G   P  E  IV  +   + +P  + GE+ +RGP + +GY
Sbjct: 373 TSPII-VGNPMSDDRRPGYVGVPFPDTEVRIVDPEDPDETMPDGEEGELLVRGPQVFKGY 431

Query: 185 YNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 232
           +N  + T  +    GW  TGD+   + DG + +VDRIKELI   GF V
Sbjct: 432 WNRPEETAKSF-LDGWFRTGDVVVMEEDGFIRIVDRIKELIITGGFNV 478

Length = 573

>gnl|CDD|181381 PRK08316, PRK08316, acyl-CoA synthetase; Validated

 Score =  133 bits (337), Expect = 2e-36
 Identities = 74/220 (33%), Positives = 113/220 (51%), Gaps = 3/220 (1%)

Query: 15  VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILA 74
           + L  LPL+H   L V     L  G+  +++   D E+ LR IE  R+T  +  P + ++
Sbjct: 214 IPLHALPLYHCAQLDVFLGPYLYVGATNVILDAPDPELILRTIEAERITSFFAPPTVWIS 273

Query: 75  LAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVGYGLTETSGIATMEN 134
           L +H      DLSSL+    GA+ +  E+++E  + +P        YG TE + +AT+  
Sbjct: 274 LLRHPDFDTRDLSSLRKGYYGASIMPVEVLKELRERLPGLRFYNC-YGQTEIAPLATVLG 332

Query: 135 SFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQATKLT 194
                R  GSAG     VE  +V  D    + P ++GEI  R P +M GY+++ + T   
Sbjct: 333 PEEHLRRPGSAGRPVLNVETRVVD-DDGNDVAPGEVGEIVHRSPQLMLGYWDDPEKTAEA 391

Query: 195 IDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTS 234
             + GW H+GDLG  D +G + VVDR K++IK  G  V S
Sbjct: 392 F-RGGWFHSGDLGVMDEEGYITVVDRKKDMIKTGGENVAS 430

Length = 523

>gnl|CDD|213277 cd05909, AAS_C, C-terminal domain of the acyl-acyl carrier protein synthetase (also called 2-acylglycerophosphoethanolamine acyltransferase, Aas)

 Score =  130 bits (328), Expect = 3e-35
 Identities = 74/214 (34%), Positives = 106/214 (49%), Gaps = 8/214 (3%)

Query: 15  VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK-FDLEMFLRAIEKHRVTHIWVVPPLIL 73
           V L  LPLFH FGL V     L  G  ++      D +     I  ++ T +   P  + 
Sbjct: 188 VLLGALPLFHAFGLTVTLLLPLLTGLRVVYYPNPLDAKKIAELIRDYKATILCGTPTFLR 247

Query: 74  ALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVGYGLTETSGIATME 133
             A++      D SSL+LV +GA  L +   E   +       I  GYG TE S + ++ 
Sbjct: 248 GYARN--AHPEDFSSLRLVVAGAEKLPEATRELFEEKF--GIRILEGYGATECSPVISV- 302

Query: 134 NSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQATKL 193
           N+  G++  G+ G   PG+E  IVS +T + LP  + G + +RGPN+M GY NNE+ T  
Sbjct: 303 NTPMGNK-PGTVGRPLPGIEVRIVSPETHEELPIGEGGLLLVRGPNVMSGYLNNEEKTSE 361

Query: 194 -TIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIK 226
             +   GW  TGD+G  D DG L +V R+K   K
Sbjct: 362 VEVLGDGWYDTGDIGKIDEDGFLTIVGRLKRFAK 395

Acyl-acyl carrier protein synthase (Aas) is a membrane protein responsible for a minor pathway of incorporating exogenous fatty acids into membrane phospholipids. Its in vitro activity is characterized by the ligation of free fatty acids between 8 and 18 carbons in length to the acyl carrier protein sulfydryl group (ACP-SH) in the presence of ATP and Mg2+. However, its in vivo function is as a 2-acylglycerophosphoethanolamine (2-acyl-GPE) acyltransferase. The reaction occurs in two steps: the acyl chain is first esterified to acyl carrier protein (ACP) via a thioester bond, followed by a second step where the acyl chain is transferred to a 2-acyllysophospholipid, thus completing the transacylation reaction. This model represents the C-terminal domain of the enzyme, which belongs to the class I adenylate-forming enzyme family, including acyl-CoA synthetases. Length = 489

>gnl|CDD|162605 TIGR01923, menE, O-succinylbenzoate-CoA ligase

 Score =  127 bits (320), Expect = 2e-34
 Identities = 65/211 (30%), Positives = 102/211 (48%), Gaps = 22/211 (10%)

Query: 17  LCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALA 76
           L  LPL+H+ GL+++    ++  +  I+     L   L  I   RVTHI +VP  +  L 
Sbjct: 156 LLSLPLYHISGLSILFRWLIEGATLRIVDKFNQL---LEMIANERVTHISLVPTQLNRLL 212

Query: 77  KHGLVKKFDLSSLKLVGSGAAPLGKELMEECA-KNVPSATVIQVGYGLTET-SGIATMEN 134
             G        +L+ +  G + +   L+EE     +P    I + YG+TET S + T   
Sbjct: 213 DEGGHN----ENLRKILLGGSAIPAPLIEEAQQYGLP----IYLSYGMTETCSQVTTATP 264

Query: 135 SFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQATKLT 194
               +R     G    G E  I  VD ++       GEI ++G N+M+GY    + T   
Sbjct: 265 EMLHAR--PDVGRPLAGREIKI-KVDNKE-----GHGEIMVKGANLMKGYLYQGELTPAF 316

Query: 195 IDKKGWVHTGDLGYFDGDGQLYVVDRIKELI 225
            +++GW +TGD+G  DG+G LYV+ R  +LI
Sbjct: 317 -EQQGWFNTGDIGELDGEGFLYVLGRRDDLI 346

This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 436

>gnl|CDD|213300 cd05934, FACL_DitJ_like, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score =  126 bits (319), Expect = 3e-34
 Identities = 69/220 (31%), Positives = 97/220 (44%), Gaps = 16/220 (7%)

Query: 15  VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILA 74
           V L  LPLFH+   A      L  G+ ++L+ +F    F   + KH  T   ++  +   
Sbjct: 124 VLLTPLPLFHINAQAYSVYAALLVGATLVLLPRFSASRFWDQVRKHGATVFNLLGAMAAI 183

Query: 75  LAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAK--NVPSATVIQVGYGLTETSGIATM 132
           L K           L+ V    APL   +     +   V     +  GYG+TET      
Sbjct: 184 LMKQPPSPDDRDHPLRFVFG--APLPAAIWPAFEERFGVK----LVEGYGMTETGVPI-- 235

Query: 133 ENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPN---MMRGYYNNEQ 189
             +       GS G   PGVE  IV  D +  +PP ++GE+ +R      M +GYY   +
Sbjct: 236 -IAPGDPAPPGSCGRPRPGVEVRIVDEDGR-EVPPGEVGELVVRPRRPWAMFKGYYGMPE 293

Query: 190 ATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKG 229
           AT     + GW HTGD G  D DG LY VDR K+ I+ +G
Sbjct: 294 ATAKAW-RNGWFHTGDRGRRDEDGFLYFVDRKKDAIRRRG 332

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Members of this family include DitJ from Pseudomonas and similar proteins. Length = 421

>gnl|CDD|213297 cd05931, FAAL, Fatty acyl-AMP ligase (FAAL)

 Score =  127 bits (321), Expect = 6e-34
 Identities = 75/258 (29%), Positives = 112/258 (43%), Gaps = 63/258 (24%)

Query: 20  LPLFHVFGL--AVITCGQLQKGSCIILMAKFDLEMF-------LRAIEKHRVTHIWVVPP 70
           LPL+H  GL   ++    L  G  ++LM+      F       L AI ++R T     P 
Sbjct: 196 LPLYHDMGLIGGLLQP--LYAGFPVVLMSPLA---FLRRPLRWLEAISRYRATVSGA-PN 249

Query: 71  LILALAKHGLVKKF--------DLSSLKLVGSGAAPLGKELMEE-CAKNVP---SATVIQ 118
               L     V++         DLSS ++  +GA P+  + +E    +  P         
Sbjct: 250 FAYDLC----VRRVRDEQLAGLDLSSWRVAFNGAEPVRADTLERFAERFAPAGFRPEAFL 305

Query: 119 VGYGLTETSGIATM-------------------------ENSFAGSRNIGSAGALAPGVE 153
             YGL E +   +                              A +R + S G   PG E
Sbjct: 306 PCYGLAEATLAVSGGPPGAGPVVLRVDRDALARGGAAVAAADGAAARELVSCGRPLPGHE 365

Query: 154 ALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQATKLT------IDKKGWVHTGDLG 207
             IV  +T++PLP  ++GEIW+RGP++  GY+N  +AT  T       D+ GW+ TGDLG
Sbjct: 366 VRIVDPETRRPLPDGEVGEIWVRGPSVAAGYWNRPEATAETFGARLATDEGGWLRTGDLG 425

Query: 208 YFDGDGQLYVVDRIKELI 225
           +   DG+LYV  R+K+LI
Sbjct: 426 FLH-DGELYVTGRLKDLI 442

FAAL belongs to the class I adenylate forming enzyme family and is homologous to fatty acyl-coenzyme A (CoA) ligases (FACLs). However, FAALs produce only the acyl adenylate and are unable to perform the thioester-forming reaction, while FACLs perform a two-step catalytic reaction; AMP ligation followed by CoA ligation using ATP and CoA as cofactors. FAALs have insertion motifs between the N-terminal and C-terminal subdomains that distinguish them from the FACLs. This insertion motif precludes the binding of CoA, thus preventing CoA ligation. It has been suggested that the acyl adenylates serve as substrates for multifunctional polyketide synthases to permit synthesis of complex lipids such as phthiocerol dimycocerosate, sulfolipids, mycolic acids, and mycobactin. Length = 547

>gnl|CDD|236043 PRK07529, PRK07529, AMP-binding domain protein; Validated

 Score =  127 bits (322), Expect = 7e-34
 Identities = 70/228 (30%), Positives = 112/228 (49%), Gaps = 29/228 (12%)

Query: 15  VFLCVLPLFHVFGLAVITCGQLQKGSCIIL-----------MAKFDLEMFLRAIEKHRVT 63
              C LPLFHV  L V     L +G+ ++L           +A F      + +E++R+ 
Sbjct: 256 TVFCGLPLFHVNALLVTGLAPLARGAHVVLATPQGYRGPGVIANF-----WKIVERYRIN 310

Query: 64  HIWVVPPLILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQV--GY 121
            +  VP +  AL +   V   D+SSL+    GAAPL  E+     +   +AT +++  GY
Sbjct: 311 FLSGVPTVYAALLQVP-VDGHDISSLRYALCGAAPLPVEV----FRRFEAATGVRIVEGY 365

Query: 122 GLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVD----TQKPLPPNQLGEIWLRG 177
           GLTE + ++++ N   G R IGS G   P     +V +D      +    +++G + + G
Sbjct: 366 GLTEATCVSSV-NPPDGERRIGSVGLRLPYQRVRVVILDDAGRYLRDCAVDEVGVLCIAG 424

Query: 178 PNMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELI 225
           PN+  GY        L ++  GW++TGDLG  D DG  ++  R K+LI
Sbjct: 425 PNVFSGYLEAAHNKGLWLED-GWLNTGDLGRIDADGYFWLTGRAKDLI 471

Length = 632

>gnl|CDD|223442 COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism]

 Score =  127 bits (320), Expect = 7e-34
 Identities = 64/222 (28%), Positives = 93/222 (41%), Gaps = 17/222 (7%)

Query: 15  VFLCVLPLFHVFGLAVITCGQLQKGSCIILM---AKFDLEMFLRAIEKHRVTHIWVVPPL 71
            F        ++GL       L  G+  +L      +  E    A+EK++VT     P  
Sbjct: 215 RFWNSSDPGWIYGLWYSVFSPLASGATTVLYDGRPFYSPERLWEALEKYKVTIFGTSPTF 274

Query: 72  ILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVGYGLTETSGIAT 131
           +  L K GL + +DLSSL+++GS   PL  E  E    +     ++   YG TET     
Sbjct: 275 LRRLMKLGLGEPYDLSSLRVLGSAGEPLNPEAFEW-FYSALGVWILD-IYGQTETGMGF- 331

Query: 132 MENSFAGSRNI--GSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPN--MMRGYYNN 187
                AG   +  GS+G   PG     V  D   P+PP   GE+ +R P   M   Y+N+
Sbjct: 332 ----IAGRPPVKNGSSGLPLPGYAVRRV-DDEGNPVPPGV-GELVVRLPWPGMALTYWND 385

Query: 188 EQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKG 229
            +  K       W  TGD    D DG  ++  R  ++IK  G
Sbjct: 386 PERYKEAY-FGRWYRTGDWAERDEDGYFWLHGRSDDVIKVSG 426

Length = 528

>gnl|CDD|213309 cd05944, FACL_like_4, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score =  124 bits (313), Expect = 8e-34
 Identities = 72/223 (32%), Positives = 113/223 (50%), Gaps = 15/223 (6%)

Query: 13  DYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA------KFDLEMFLRAIEKHRVTHIW 66
             V L  LPLFHV G  V     L +G+ ++L           +  F + +E++RVT + 
Sbjct: 43  GDVLLNGLPLFHVGGAIVTGLAPLARGATVVLPTPSGFRNPAVVANFWKIVERYRVTLLS 102

Query: 67  VVPPLILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVGYGLTET 126
            VP ++ AL +  L    D+SSL+   +GAAPL  E+     + V    V++ GYG+TE 
Sbjct: 103 AVPTVLAALLQVPLGDA-DISSLRYALTGAAPLPVEVARR-FEAVTGVPVVE-GYGMTEG 159

Query: 127 SGIATMENSFAGSRNIGSAGALAPGVEALIVSVD----TQKPLPPNQLGEIWLRGPNMMR 182
           +G++ +     G R  GS G   P     +  +D      +   P ++G + +RGPN+  
Sbjct: 160 TGVSAINPRG-GPRRPGSVGLRLPYTRVRVAKLDAGGALGRDCAPGEVGVLAIRGPNVFP 218

Query: 183 GYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELI 225
           GY N+       ++  GW++TGDLG  D DG L++  R K+LI
Sbjct: 219 GYLNDAHNAGARLED-GWLNTGDLGRIDADGYLWLTGRAKDLI 260

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 359

>gnl|CDD|183506 PRK12406, PRK12406, long-chain-fatty-acid--CoA ligase; Provisional

 Score =  126 bits (318), Expect = 1e-33
 Identities = 72/221 (32%), Positives = 112/221 (50%), Gaps = 27/221 (12%)

Query: 17  LCVLPLFH----VFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLI 72
           L   PL+H     +GL     G +     ++L  +FD E  L+ IE+HR+TH+ +VP + 
Sbjct: 200 LLTGPLYHSAPNAYGLRAGRLGGV-----LVLQPRFDPEELLQLIERHRITHMHMVPTMF 254

Query: 73  LALAK--HGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSAT------VIQVGYGLT 124
           + L K    +  K+D+SSL+ V   AAP        C  +V  A       VI   YG T
Sbjct: 255 IRLLKLPEEVRAKYDVSSLRHVIHAAAP--------CPADVKRAMIEWWGPVIYEYYGST 306

Query: 125 ETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGY 184
           E+ G  T   S     + G+ G  APG E   V  +  +PLP  ++GEI+ R        
Sbjct: 307 ES-GAVTFATSEDALSHPGTVGKAAPGAELRFVD-EDGRPLPQGEIGEIYSRIAGNPDFT 364

Query: 185 YNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELI 225
           Y+N+   +  ID+ G++ +GD+GY D DG L++ DR ++++
Sbjct: 365 YHNKPEKRAEIDRGGFITSGDVGYLDADGYLFLCDRKRDMV 405

Length = 509

>gnl|CDD|213271 cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA ligase (also called cyclohex-1-ene-1-carboxylate:CoA ligase)

 Score =  125 bits (316), Expect = 1e-33
 Identities = 66/227 (29%), Positives = 97/227 (42%), Gaps = 11/227 (4%)

Query: 1   MVTMDQETAGELDYVFLCVLPLFHVFG--LAVITCGQLQKGSCIILMAKFDLEMFLRAIE 58
            V     T  +   V L   PL H+ G    +     L  G+ ++L  ++D    L  I 
Sbjct: 125 YVERLGLTPDD---VVLMPSPLAHITGFLYGLELP--LLLGATVVLQDRWDPARALELIR 179

Query: 59  KHRVTHIWVVPPLILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQ 118
           +H VT      P +  L         DL SL++   G AP+ +EL    A+ +     + 
Sbjct: 180 EHGVTFTMGATPFLADLLAAADAAGPDLPSLRVFLCGGAPVPRELARRAAEALG--AKVV 237

Query: 119 VGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGP 178
             YG+TE   +          +   + G   PGVE  IV  D    +PP + GE+ +RGP
Sbjct: 238 RAYGMTEVPLVTVGTPDDPDDKRAATDGRPVPGVEVRIVD-DDGNDVPPGEEGELQVRGP 296

Query: 179 NMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELI 225
            +  GY +    T+   D  GW  TGDLG  D DG L +  R K++I
Sbjct: 297 QLFLGYLDPPDNTEAFTD-DGWFRTGDLGRLDADGYLRITGRKKDII 342

Cyclohexanecarboxylate-CoA ligase activates the aliphatic ring compound, cyclohexanecarboxylate, for degradation. It catalyzes the synthesis of cyclohexanecarboxylate-CoA thioesters in a two-step reaction involving the formation of cyclohexanecarboxylate-AMP anhydride, followed by the nucleophilic substitution of AMP by CoA. Length = 437

>gnl|CDD|213293 cd05927, LC-FACS_euk, Eukaryotic long-chain fatty acid CoA synthetase (LC-FACS)

 Score =  126 bits (318), Expect = 1e-33
 Identities = 56/142 (39%), Positives = 73/142 (51%), Gaps = 10/142 (7%)

Query: 89  LKLVGSGAAPLGKELMEECAKNVPSATVIQVGYGLTETSGIATMENSFAGSRNIGSAGAL 148
           ++L+ SG APL  +  E   +      V+Q GYGLTET    T+  S  G    G  G  
Sbjct: 271 VRLMLSGGAPLSPDTQEFL-RVALGCPVLQ-GYGLTETCAGGTL--SDPGDTTTGHVGPP 326

Query: 149 APGVEALIVSVD----TQKPLPPNQLGEIWLRGPNMMRGYYNNEQATKLTIDKKGWVHTG 204
            P  E  +V V       K  PP   GEI +RGPN+ +GYY N + T    D+ GW HTG
Sbjct: 327 LPCCEIKLVDVPEMGYFAKDDPPR--GEICIRGPNVFKGYYKNPEKTAEAFDEDGWFHTG 384

Query: 205 DLGYFDGDGQLYVVDRIKELIK 226
           D+G +  DG L ++DR K L K
Sbjct: 385 DIGEWLPDGTLKIIDRKKNLFK 406

The members of this family are eukaryotic fatty acid CoA synthetases that activate fatty acids with chain lengths of 12 to 20. LC-FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Organisms tend to have multiple isoforms of LC-FACS genes with multiple splice variants. For example, nine genes are found in Arabidopsis and six genes are expressed in mammalian cells. Length = 539

>gnl|CDD|236359 PRK08974, PRK08974, long-chain-fatty-acid--CoA ligase; Validated

 Score =  122 bits (309), Expect = 3e-32
 Identities = 73/217 (33%), Positives = 112/217 (51%), Gaps = 6/217 (2%)

Query: 20  LPLFHVFGLAVITCGQLQKGSCIILMAK-FDLEMFLRAIEKHRVTHIWVVPPLILALAKH 78
           LPL+H+F L V     ++ G   +L+    D+  F++ ++K+  T I  V  L  AL  +
Sbjct: 257 LPLYHIFALTVNCLLFIELGGQNLLITNPRDIPGFVKELKKYPFTAITGVNTLFNALLNN 316

Query: 79  GLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVGYGLTETSGIATMENSFAG 138
              ++ D SSLKL   G   + + + E   K   +   +  GYGLTE S + ++ N +  
Sbjct: 317 EEFQELDFSSLKLSVGGGMAVQQAVAERWVKL--TGQYLLEGYGLTECSPLVSV-NPYDL 373

Query: 139 SRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQATKLTIDKK 198
               GS G   P  E  +V  D    +PP + GE+W++GP +M GY+   +AT   I K 
Sbjct: 374 DYYSGSIGLPVPSTEIKLVD-DDGNEVPPGEPGELWVKGPQVMLGYWQRPEATDEVI-KD 431

Query: 199 GWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSN 235
           GW+ TGD+   D +G L +VDR K++I   GF V  N
Sbjct: 432 GWLATGDIAVMDEEGFLRIVDRKKDMILVSGFNVYPN 468

Length = 560

>gnl|CDD|213298 cd05932, LC_FACS_bac, Bacterial long-chain fatty acid CoA synthetase (LC-FACS), including Marinobacter hydrocarbonoclasticus isoprenoid Coenzyme A synthetase

 Score =  121 bits (307), Expect = 3e-32
 Identities = 72/237 (30%), Positives = 108/237 (45%), Gaps = 45/237 (18%)

Query: 16  FLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVP------ 69
            L  LPL H+    ++  G L  G+ +  +    L+ F   +++ R T  + VP      
Sbjct: 181 LLSYLPLAHIAERVIVEGGSLYSGAEVFFV--ESLDTFAADLQRARPTVFFSVPRLWTKF 238

Query: 70  -------------------PLILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAK- 109
                              P++ +L K  ++K   L   +L GSGAAP+   L+    K 
Sbjct: 239 QQGILAKLPPEKLNLLLKIPILSSLVKKKILKGLGLDQARLAGSGAAPMPPALIAWYRKL 298

Query: 110 NVPSATVIQVGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQ 169
            +P    I  GYG+TE    +T+  ++ G R IG+ G   PGVE  I           ++
Sbjct: 299 GLP----ICEGYGMTENFAYSTL--NYPGDRRIGTVGKPIPGVELKI-----------SE 341

Query: 170 LGEIWLRGPNMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIK 226
            GEI +R P +M GYY + + T     + GW+HTGD G  D DG L +  R+KEL K
Sbjct: 342 DGEILIRSPGLMSGYYKDPEKTAEAFTEDGWLHTGDKGEIDEDGFLKITGRVKELFK 398

The members of this family are bacterial long-chain fatty acid CoA synthetase. Marinobacter hydrocarbonoclasticus isoprenoid Coenzyme A synthetase in this family is involved in the synthesis of isoprenoid wax ester storage compounds when grown on phytol as the sole carbon source. LC-FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 504

>gnl|CDD|169098 PRK07786, PRK07786, long-chain-fatty-acid--CoA ligase; Validated

 Score =  122 bits (308), Expect = 3e-32
 Identities = 70/213 (32%), Positives = 110/213 (51%), Gaps = 7/213 (3%)

Query: 15  VFLCVLPLFHVFGLAVITCGQLQKGSCIIL--MAKFDLEMFLRAIEKHRVTHIWVVPPLI 72
           V    +PLFH+ G+  +  G L  G+  ++  +  FD    L  +E  +VT I++VP   
Sbjct: 218 VGFVGVPLFHIAGIGSMLPG-LLLGAPTVIYPLGAFDPGQLLDVLEAEKVTGIFLVPAQW 276

Query: 73  LALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVGYGLTETSGIATM 132
            A+      +  DL+ L+++  GAAP    L+ + A   P A ++   +G TE S +  M
Sbjct: 277 QAVCAEQQARPRDLA-LRVLSWGAAPASDTLLRQMAATFPEAQILAA-FGQTEMSPVTCM 334

Query: 133 ENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQATK 192
                  R +GS G + P V A +V  +    +P  ++GEI  R P +M GY+NN +AT 
Sbjct: 335 LLGEDAIRKLGSVGKVIPTVAARVVD-ENMNDVPVGEVGEIVYRAPTLMSGYWNNPEATA 393

Query: 193 LTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELI 225
                 GW H+GDL   D +G ++VVDR K++I
Sbjct: 394 EAFA-GGWFHSGDLVRQDEEGYVWVVDRKKDMI 425

Length = 542

>gnl|CDD|236315 PRK08633, PRK08633, 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

 Score =  123 bits (310), Expect = 5e-32
 Identities = 73/226 (32%), Positives = 104/226 (46%), Gaps = 20/226 (8%)

Query: 11   ELDYVFLCVLPLFHVFGLAVITCGQLQKG-SCIILMAKFDLEMFLRAIEKHRVTHIWVVP 69
              D V L  LP FH FGL V     L +G   +      D     + + KHR T +   P
Sbjct: 821  RNDDVILSSLPFFHSFGLTVTLWLPLLEGIKVVYHPDPTDALGIAKLVAKHRATILLGTP 880

Query: 70   PLILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAK--NVPSATVIQVGYGLTETS 127
              +    ++  +     +SL+LV +GA  L  E+ +   +   +     I  GYG TETS
Sbjct: 881  TFLRLYLRNKKLHPLMFASLRLVVAGAEKLKPEVADAFEEKFGIR----ILEGYGATETS 936

Query: 128  GIAT--MENSFA-------GSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGP 178
             +A+  + +  A       GS+  GS G   PGV   IV  +T + LPP + G I + GP
Sbjct: 937  PVASVNLPDVLAADFKRQTGSKE-GSVGMPLPGVAVRIVDPETFEELPPGEDGLILIGGP 995

Query: 179  NMMRGYYNNEQATK---LTIDKKGWVHTGDLGYFDGDGQLYVVDRI 221
             +M+GY  + + T      ID  GW  TGD G+ D DG L + DR 
Sbjct: 996  QVMKGYLGDPEKTAEVIKDIDGIGWYVTGDKGHLDEDGFLTITDRY 1041

Length = 1146

>gnl|CDD|213327 cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles

 Score =  118 bits (299), Expect = 5e-31
 Identities = 67/229 (29%), Positives = 107/229 (46%), Gaps = 28/229 (12%)

Query: 15  VFLCVLPLFHVFG-----LAVITCGQLQKGSCIILMAKF-DLEMFLRAIEKHRVTHIWVV 68
             L V+P+FHV        A +       G+ ++L  ++ D    L  IE+ +VT    V
Sbjct: 207 TVLPVVPMFHVNAWGLPYAATMV------GAKLVLPGRYLDPASLLDLIEEEKVTVSAGV 260

Query: 69  PPLILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVGYGLTETSG 128
           P + L L  +      DLSSL+ V  G + L + L+E+  +      VI   +G+TETS 
Sbjct: 261 PTIWLGLLNYLEANGKDLSSLRRVVVGGSALPRSLIEKLEER--GVEVIH-AWGMTETSP 317

Query: 129 IATMENSFAGSRNIG---------SAGALAPGVEALIVSVDTQKPLPPN--QLGEIWLRG 177
           + T+        ++            G   PGVE  IV  +    LP +   +GE+ +RG
Sbjct: 318 LGTVSRLKPHLVDLPEEEKLELRAKQGRPVPGVELRIVDDEGN-ELPWDGKTVGELVVRG 376

Query: 178 PNMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIK 226
           P +   YY + + T+  + + GW  TGD+   D DG + + DR K++IK
Sbjct: 377 PWVTGSYYKDPEKTE-ELTRDGWFRTGDVAVIDEDGYIQITDRAKDVIK 424

This family includes fatty acyl-CoA synthetases that can activate medium-chain to long-chain fatty acids. They catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family was shown catalyzing the long-chain fatty acid, myristoyl acid, while another member in this family, the AlkK protein identified from Pseudomonas oleovorans, targets medium chain fatty acids. This family also includes uncharacterized FACS proteins. Length = 517

>gnl|CDD|236215 PRK08276, PRK08276, long-chain-fatty-acid--CoA ligase; Validated

 Score =  118 bits (299), Expect = 6e-31
 Identities = 69/222 (31%), Positives = 106/222 (47%), Gaps = 32/222 (14%)

Query: 13  DYVFLCVLPLFH----VFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVV 68
           D V+L   PL+H     FG++ +  G       +++M KFD E  L  IE++RVTH  +V
Sbjct: 187 DSVYLSPAPLYHTAPLRFGMSALALGGT-----VVVMEKFDAEEALALIERYRVTHSQLV 241

Query: 69  PPL---ILALAKHGLVK-KFDLSSLKLVGSGAAPLGKELMEECAKNVPSAT------VIQ 118
           P +   +L L +   V+ ++D+SSL++    AAP        C   V  A       +I 
Sbjct: 242 PTMFVRMLKLPEE--VRARYDVSSLRVAIHAAAP--------CPVEVKRAMIDWWGPIIH 291

Query: 119 VGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGP 178
             Y  +E  G+ T+  S     + GS G    G E  I+  +    LPP ++G ++    
Sbjct: 292 EYYASSEGGGV-TVITSEDWLAHPGSVGKAVLG-EVRILD-EDGNELPPGEIGTVYFEMD 348

Query: 179 NMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDR 220
                Y+N+ + T    +  GWV  GD+GY D DG LY+ DR
Sbjct: 349 GYPFEYHNDPEKTAAARNPHGWVTVGDVGYLDEDGYLYLTDR 390

Length = 502

>gnl|CDD|171539 PRK12492, PRK12492, long-chain-fatty-acid--CoA ligase; Provisional

 Score =  117 bits (295), Expect = 2e-30
 Identities = 75/222 (33%), Positives = 116/222 (52%), Gaps = 5/222 (2%)

Query: 15  VFLCVLPLFHVFGL-AVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLIL 73
           V +  LPL+H++   A   C  +     +++    D+  F++ + K R + +  +  L +
Sbjct: 260 VMIAPLPLYHIYAFTANCMCMMVSGNHNVLITNPRDIPGFIKELGKWRFSALLGLNTLFV 319

Query: 74  ALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVGYGLTETSGIATME 133
           AL  H   K  D S+LKL  SG   L K   E   + +   T+++ GYGLTETS +A+  
Sbjct: 320 ALMDHPGFKDLDFSALKLTNSGGTALVKATAERWEQ-LTGCTIVE-GYGLTETSPVAST- 376

Query: 134 NSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQATKL 193
           N +     +G+ G   PG  AL V  D    LP  + GE+ ++GP +M+GY+   +AT  
Sbjct: 377 NPYGELARLGTVGIPVPGT-ALKVIDDDGNELPLGERGELCIKGPQVMKGYWQQPEATAE 435

Query: 194 TIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSN 235
            +D +GW  TGD+   D DG + +VDR K+LI   GF V  N
Sbjct: 436 ALDAEGWFKTGDIAVIDPDGFVRIVDRKKDLIIVSGFNVYPN 477

Length = 562

>gnl|CDD|236443 PRK09274, PRK09274, peptide synthase; Provisional

 Score =  117 bits (295), Expect = 3e-30
 Identities = 72/240 (30%), Positives = 106/240 (44%), Gaps = 36/240 (15%)

Query: 10  GELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIIL-M-----AKFDLEMFLRAIEKHRVT 63
           GE+D   L   PLF +FG A    G     + +I  M     A  D      AIE++ VT
Sbjct: 215 GEID---LPTFPLFALFGPA---LG----MTSVIPDMDPTRPATVDPAKLFAAIERYGVT 264

Query: 64  HIWVVPPLILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVGYGL 123
           +++  P L+  L ++G      L SL+ V S  AP+   ++E     +P    I   YG 
Sbjct: 265 NLFGSPALLERLGRYGEANGIKLPSLRRVISAGAPVPIAVIERFRAMLPPDAEILTPYGA 324

Query: 124 TETSGIATMENS--FAGSRNIGSAGA------LAPGVEALIVSVDT--------QKPLPP 167
           TE   I+++E+      +R     GA         GVE  I+++             L  
Sbjct: 325 TEALPISSIESREILFATRAATDNGAGICVGRPVDGVEVRIIAISDAPIPEWDDALRLAT 384

Query: 168 NQLGEIWLRGPNMMRGYYNNEQATKLT--IDKKG--WVHTGDLGYFDGDGQLYVVDRIKE 223
            ++GEI + GP + R YYN  +AT+L    D +G  W   GDLGY D  G+L+   R   
Sbjct: 385 GEIGEIVVAGPMVTRSYYNRPEATRLAKIPDGQGDVWHRMGDLGYLDAQGRLWFCGRKAH 444

Length = 552

>gnl|CDD|102207 PRK06145, PRK06145, acyl-CoA synthetase; Validated

 Score =  116 bits (291), Expect = 4e-30
 Identities = 75/223 (33%), Positives = 106/223 (47%), Gaps = 9/223 (4%)

Query: 16  FLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILAL 75
            L V PL+HV    +     L  G  + +  +FD E  L AIE+HR+T  W+ P ++  +
Sbjct: 193 LLVVGPLYHVGAFDLPGIAVLWVGGTLRIHREFDPEAVLAAIERHRLTCAWMAPVMLSRV 252

Query: 76  AKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVGYGLTET-SGIATMEN 134
                  +FDL SL     G     +  + +  +    A  I   YGLTET SG   ME 
Sbjct: 253 LTVPDRDRFDLDSLAWCIGGGEKTPESRIRDFTRVFTRARYID-AYGLTETCSGDTLME- 310

Query: 135 SFAGSR--NIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQATK 192
             AG     IGS G     VE  I      + LPPN  GEI +RGP + +GY+ + + T 
Sbjct: 311 --AGREIEKIGSTGRALAHVEIRIAD-GAGRWLPPNMKGEICMRGPKVTKGYWKDPEKTA 367

Query: 193 LTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSN 235
                  W  +GD+GY D +G LY+ DR K++I   G  + S+
Sbjct: 368 EAF-YGDWFRSGDVGYLDEEGFLYLTDRKKDMIISGGENIASS 409

Length = 497

>gnl|CDD|235724 PRK06178, PRK06178, acyl-CoA synthetase; Validated

 Score =  115 bits (291), Expect = 9e-30
 Identities = 73/236 (30%), Positives = 118/236 (50%), Gaps = 19/236 (8%)

Query: 9   AGELDYVFLCVLPLFHV----FGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTH 64
            G  D VFL  LP F +    FGL       L  G+ ++L+A++D   F+ A+E++RVT 
Sbjct: 247 VGGEDSVFLSFLPEFWIAGENFGLLF----PLFSGATLVLLARWDAVAFMAAVERYRVTR 302

Query: 65  IWVVPPLILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECA---KNVPSATVIQVGY 121
             ++    + L  H    ++DLSSL+ V        K+L  +     + +  + + +  +
Sbjct: 303 TVMLVDNAVELMDHPRFAEYDLSSLRQVR--VVSFVKKLNPDYRQRWRALTGSVLAEAAW 360

Query: 122 GLTETSGIATMENSF-AGSRNIGSA----GALAPGVEALIVSVDTQKPLPPNQLGEIWLR 176
           G+TET    T    F     ++ S     G   PG E  I   +T + LP    GEI +R
Sbjct: 361 GMTETHTCDTFTAGFQDDDFDLLSQPVFVGLPVPGTEFKICDFETGELLPLGAEGEIVVR 420

Query: 177 GPNMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 232
            P++++GY+N  +AT   + + GW+HTGD+G  D  G L+ + R KE++K  G  V
Sbjct: 421 TPSLLKGYWNKPEATAEAL-RDGWLHTGDIGKIDEQGFLHYLGRRKEMLKVNGMSV 475

Length = 567

>gnl|CDD|236097 PRK07788, PRK07788, acyl-CoA synthetase; Validated

 Score =  112 bits (283), Expect = 1e-28
 Identities = 69/216 (31%), Positives = 101/216 (46%), Gaps = 17/216 (7%)

Query: 15  VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPL--- 71
             L   P+FH  G A +T   +  GS ++L  +FD E  L  I KH+ T + VVP +   
Sbjct: 250 TTLLPAPMFHATGWAHLTLA-MALGSTVVLRRRFDPEATLEDIAKHKATALVVVPVMLSR 308

Query: 72  ILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVGYGLTETS--GI 129
           IL L    L  K+D SSLK++    + L  EL     +      V+   YG TE +   I
Sbjct: 309 ILDLGPEVL-AKYDTSSLKIIFVSGSALSPELATRALEAF--GPVLYNLYGSTEVAFATI 365

Query: 130 ATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQ 189
           AT E+    +   G+ G    GV   I+  +    +P   +G I++       GY +   
Sbjct: 366 ATPEDL---AEAPGTVGRPPKGVTVKILD-ENGNEVPRGVVGRIFVGNGFPFEGYTDG-- 419

Query: 190 ATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELI 225
             K  ID  G + +GD+GYFD DG L+V  R  ++I
Sbjct: 420 RDKQIID--GLLSSGDVGYFDEDGLLFVDGRDDDMI 453

Length = 549

>gnl|CDD|235923 PRK07059, PRK07059, Long-chain-fatty-acid--CoA ligase; Validated

 Score =  110 bits (277), Expect = 6e-28
 Identities = 72/222 (32%), Positives = 106/222 (47%), Gaps = 5/222 (2%)

Query: 15  VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK-FDLEMFLRAIEKHRVTHIWVVPPLIL 73
            F+C LPL+H+F L V     ++ G   IL+    D+  F++ ++K++V     V  L  
Sbjct: 254 NFVCALPLYHIFALTVCGLLGMRTGGRNILIPNPRDIPGFIKELKKYQVHIFPAVNTLYN 313

Query: 74  ALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVGYGLTETSGIATME 133
           AL  +    K D S L +   G   + + + E   +   +   I  GYGL+ETS +AT  
Sbjct: 314 ALLNNPDFDKLDFSKLIVANGGGMAVQRPVAERWLEM--TGCPITEGYGLSETSPVATC- 370

Query: 134 NSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQATKL 193
           N    +   G+ G   P  E  I   D    LP  + GEI +RGP +M GY+N    T  
Sbjct: 371 NPVDATEFSGTIGLPLPSTEVSIRD-DDGNDLPLGEPGEICIRGPQVMAGYWNRPDETAK 429

Query: 194 TIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSN 235
            +   G+  TGD+G  D  G   +VDR K++I   GF V  N
Sbjct: 430 VMTADGFFRTGDVGVMDERGYTKIVDRKKDMILVSGFNVYPN 471

Length = 557

>gnl|CDD|181546 PRK08751, PRK08751, putative long-chain fatty acyl CoA ligase; Provisional

 Score =  110 bits (276), Expect = 7e-28
 Identities = 72/222 (32%), Positives = 110/222 (49%), Gaps = 5/222 (2%)

Query: 15  VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK-FDLEMFLRAIEKHRVTHIWVVPPLIL 73
           V +  LPL+H+F L       ++ G C  L++   D+  F++ ++K R T    V  L  
Sbjct: 256 VVITALPLYHIFALTANGLVFMKIGGCNHLISNPRDMPGFVKELKKTRFTAFTGVNTLFN 315

Query: 74  ALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVGYGLTETSGIATME 133
            L       + D SSLK+   G   + + + E   K V   T+++  YGLTETS  A + 
Sbjct: 316 GLLNTPGFDQIDFSSLKMTLGGGMAVQRSVAERW-KQVTGLTLVE-AYGLTETSPAACI- 372

Query: 134 NSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQATKL 193
           N        GS G   P  +A I   D    L   ++GE+ ++GP +M+GY+   + T  
Sbjct: 373 NPLTLKEYNGSIGLPIPSTDACIKD-DAGTVLAIGEIGELCIKGPQVMKGYWKRPEETAK 431

Query: 194 TIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSN 235
            +D  GW+HTGD+   D  G +Y+VDR K++I   GF V  N
Sbjct: 432 VMDADGWLHTGDIARMDEQGFVYIVDRKKDMILVSGFNVYPN 473

Length = 560

>gnl|CDD|168170 PRK05677, PRK05677, long-chain-fatty-acid--CoA ligase; Validated

 Score =  109 bits (274), Expect = 2e-27
 Identities = 65/217 (29%), Positives = 109/217 (50%), Gaps = 6/217 (2%)

Query: 20  LPLFHVFGLAVITCGQLQKGSCIILMAK-FDLEMFLRAIEKHRVTHIWVVPPLILALAKH 78
           LPL+H++         +  G+  IL++   DL   ++ + K + +    +  L +AL  +
Sbjct: 258 LPLYHIYAFTFHCMAMMLIGNHNILISNPRDLPAMVKELGKWKFSGFVGLNTLFVALCNN 317

Query: 79  GLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVGYGLTETSGIATMENSFAG 138
              +K D S+LKL  SG   L      E  K V    + + GYG+TETS + ++ N    
Sbjct: 318 EAFRKLDFSALKLTLSGGMALQLA-TAERWKEVTGCAICE-GYGMTETSPVVSV-NPSQA 374

Query: 139 SRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQATKLTIDKK 198
            + +G+ G   P     ++  D    LP  ++GE+ ++GP +M+GY+   +AT   +D  
Sbjct: 375 IQ-VGTIGIPVPSTLCKVID-DDGNELPLGEVGELCVKGPQVMKGYWQRPEATDEILDSD 432

Query: 199 GWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSN 235
           GW+ TGD+     DG + +VDR K++I   GF V  N
Sbjct: 433 GWLKTGDIALIQEDGYMRIVDRKKDMILVSGFNVYPN 469

Length = 562

>gnl|CDD|235722 PRK06164, PRK06164, acyl-CoA synthetase; Validated

 Score =  109 bits (274), Expect = 2e-27
 Identities = 66/226 (29%), Positives = 97/226 (42%), Gaps = 14/226 (6%)

Query: 13  DYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLI 72
             V L  LP   VFG + +  G L  G+ ++    FD     RA+ +HRVTH +    ++
Sbjct: 222 GAVLLAALPFCGVFGFSTLL-GALAGGAPLVCEPVFDAARTARALRRHRVTHTFGNDEML 280

Query: 73  LALAKHGLVKKFDLSSLKLVGSGA-APLGKELMEE-CAKNVPSATVIQVGYGLTETSG-- 128
             +      +  D  S +L G  + AP   EL     A+ VP   +    YG +E     
Sbjct: 281 RRILDTAGERA-DFPSARLFGFASFAPALGELAALARARGVPLTGL----YGSSEVQALV 335

Query: 129 -IATMENSFAGSRNIGSAGALA-PGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYN 186
            +    +  +     G  G  A P              LP  + GEI +R P++MRGY +
Sbjct: 336 ALQPATDPVSVRIEGG--GRPASPEARVRARDPQDGALLPDGESGEIEIRAPSLMRGYLD 393

Query: 187 NEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 232
           N  AT   +   G+  TGDLGY  GDGQ     R+ + ++  GF V
Sbjct: 394 NPDATARALTDDGYFRTGDLGYTRGDGQFVYQTRMGDSLRLGGFLV 439

Length = 540

>gnl|CDD|213299 cd05933, ACSBG_like, Bubblegum-like very long-chain fatty acid CoA synthetase (VL-FACS)

 Score =  109 bits (273), Expect = 2e-27
 Identities = 54/137 (39%), Positives = 78/137 (56%), Gaps = 13/137 (9%)

Query: 94  SGAAPLGKELMEE-CAKNVPSATVIQVGYGLTETSGIATMENSFAGSRNIGSAGALAPGV 152
           +GAAP+ +E +E   + N+P    I   YG++ETSG  T+ N    +  + S G   PG 
Sbjct: 325 TGAAPISRETLEFFLSLNIP----IMELYGMSETSGPHTVSNP--QNYRLLSCGKALPGC 378

Query: 153 EALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGD 212
           E  I + D       + +GEI + G ++  GY N E+ T+  ID+ GW+H+GDLG+ D D
Sbjct: 379 ETKIHNPDA------DGIGEICIWGRHVFMGYLNMEEKTEEAIDEDGWLHSGDLGFLDDD 432

Query: 213 GQLYVVDRIKELIKYKG 229
           G LY+  RIKELI   G
Sbjct: 433 GFLYITGRIKELIITAG 449

This family of very long-chain fatty acid CoA synthetase is named bubblegum because Drosophila melanogaster mutant bubblegum (BGM) has elevated levels of very-long-chain fatty acids (VLCFA) caused by a defective gene of this family. The human homolog (hsBG) has been characterized as a very long chain fatty acid CoA synthetase that functions specifically in the brain; hsBG may play a central role in brain VLCFA metabolism and myelinogenesis. VL-FACS is involved in the first reaction step of very long chain fatty acid degradation. It catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 594

>gnl|CDD|181011 PRK07514, PRK07514, malonyl-CoA synthase; Validated

 Score =  108 bits (271), Expect = 3e-27
 Identities = 73/222 (32%), Positives = 110/222 (49%), Gaps = 10/222 (4%)

Query: 13  DYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLI 72
           D V +  LP+FH  GL V T   L  G+ +I + KFD +  L  +   R T +  VP   
Sbjct: 197 DDVLIHALPIFHTHGLFVATNVALLAGASMIFLPKFDPDAVLALMP--RATVMMGVPTFY 254

Query: 73  LALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVGYGLTETSGIATM 132
             L +   + +   + ++L  SG+APL  E   E  +    A  I   YG+TET+   + 
Sbjct: 255 TRLLQEPRLTREAAAHMRLFISGSAPLLAETHREFQERTGHA--ILERYGMTETNMNTS- 311

Query: 133 ENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQATK 192
            N + G R  G+ G   PGV   +   +T   LPP ++G I ++GPN+ +GY+   + T 
Sbjct: 312 -NPYDGERRAGTVGFPLPGVSLRVTDPETGAELPPGEIGMIEVKGPNVFKGYWRMPEKTA 370

Query: 193 --LTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 232
                D  G+  TGDLG  D  G +++V R K+LI   G+ V
Sbjct: 371 EEFRAD--GFFITGDLGKIDERGYVHIVGRGKDLIISGGYNV 410

Length = 504

>gnl|CDD|180988 PRK07470, PRK07470, acyl-CoA synthetase; Validated

 Score =  107 bits (269), Expect = 7e-27
 Identities = 69/212 (32%), Positives = 109/212 (51%), Gaps = 14/212 (6%)

Query: 17  LCVLPLFHVFGLAVITCGQLQKGSCIILMA--KFDLEMFLRAIEKHRVTHIWVVPPLILA 74
           L V PL H  G+  +   Q+ +G+  +L+   +FD       +E+HRVT+++ VP ++  
Sbjct: 210 LVVAPLSHGAGIHQLC--QVARGAATVLLPSERFDPAEVWALVERHRVTNLFTVPTILKM 267

Query: 75  LAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVGYGLTETSGIAT--- 131
           L +H  V ++D SSL+ V    AP+ +   ++ A       ++Q  +GL E +G  T   
Sbjct: 268 LVEHPAVDRYDHSSLRYVIYAGAPMYRA-DQKRALAKLGKVLVQY-FGLGEVTGNITVLP 325

Query: 132 --MENSFAG-SRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNE 188
             + ++  G    IG+ G    G+E  I   D  + LPP + GEI + GP +  GYYNN 
Sbjct: 326 PALHDAEDGPDARIGTCGFERTGMEVQIQD-DEGRELPPGETGEICVIGPAVFAGYYNNP 384

Query: 189 QATKLTIDKKGWVHTGDLGYFDGDGQLYVVDR 220
           +A      + GW  TGDLG+ D  G LY+  R
Sbjct: 385 EANAKAF-RDGWFRTGDLGHLDARGFLYITGR 415

Length = 528

>gnl|CDD|213318 cd05971, MACS_like_3, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS)

 Score =  106 bits (267), Expect = 8e-27
 Identities = 67/217 (30%), Positives = 108/217 (49%), Gaps = 20/217 (9%)

Query: 19  VLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKH 78
           +LP  + FG+ V+             M +FD E     + ++ VT+ ++ P  +  + + 
Sbjct: 150 LLPALY-FGVPVVAYR----------MQRFDPERAFALMRRYGVTNAFLPPTALKMMRRV 198

Query: 79  G-LVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVGYGLTETSGIATMENSFA 137
           G    ++DL  L+ V SG   LG+EL+E     +   TV +  YG TE + +     +  
Sbjct: 199 GSERARYDLR-LRAVASGGESLGEELLEWARDEL-GLTVNE-FYGQTEANLVVG-NCAAL 254

Query: 138 GSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPN--MMRGYYNNEQATKLTI 195
           G    GS G   PG E  +V  D  +P+PP ++GEI ++ P+  M  GY+NN +AT    
Sbjct: 255 GPARPGSMGKPVPGHEVAVVD-DAGRPVPPGEVGEIAVKRPDPVMFLGYWNNPEATAAKF 313

Query: 196 DKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 232
               W+ TGDLG  D DG L+   R  ++IK  G+++
Sbjct: 314 -AGDWLLTGDLGRRDADGYLWFKGRADDVIKSSGYRI 349

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 439

>gnl|CDD|184022 PRK13391, PRK13391, acyl-CoA synthetase; Provisional

 Score =  105 bits (264), Expect = 3e-26
 Identities = 69/223 (30%), Positives = 96/223 (43%), Gaps = 24/223 (10%)

Query: 13  DYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPL- 71
           D V+L   PL+H      +     + G  +I+M  FD E +L  IE++ VTH  +VP + 
Sbjct: 200 DMVYLSPAPLYHSAPQRAVMLVI-RLGGTVIVMEHFDAEQYLALIEEYGVTHTQLVPTMF 258

Query: 72  --ILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSAT------VIQVGYGL 123
             +L L +  +  K+DLSSL++    AAP        C   V          +I   Y  
Sbjct: 259 SRMLKLPEE-VRDKYDLSSLEVAIHAAAP--------CPPQVKEQMIDWWGPIIHEYYAA 309

Query: 124 TETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRG 183
           TE  G  T  +S     + G+ G    G   L +  D    LPP + G IW  G      
Sbjct: 310 TEGLG-FTACDSEEWLAHPGTVGRAMFGD--LHILDDDGAELPPGEPGTIWFEGGRPFE- 365

Query: 184 YYNNEQATKLTIDKKG-WVHTGDLGYFDGDGQLYVVDRIKELI 225
           Y N+   T       G W   GD+GY D DG LY+ DR   +I
Sbjct: 366 YLNDPAKTAEARHPDGTWSTVGDIGYVDEDGYLYLTDRAAFMI 408

Length = 511

>gnl|CDD|213326 cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles and Arabidopsis

 Score =  105 bits (264), Expect = 3e-26
 Identities = 69/234 (29%), Positives = 104/234 (44%), Gaps = 39/234 (16%)

Query: 15  VFLCVLPLFH------VFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVV 68
           V+L  LP+FH       + +  +       G   + + K D       IEKH+VTH+   
Sbjct: 210 VYLWTLPMFHCNGWCFPWAITAV-------GGTHVCLRKVDAPAIYDLIEKHKVTHLCGA 262

Query: 69  PPLILALAKHGLVKKFDLSS-LKLVGSGAAPLGK--ELMEECAKNVPSATVIQVGYGLTE 125
           P ++  LA      K  L   ++++ +GA P     + MEE         V  V YGLTE
Sbjct: 263 PTVLNMLANAPEADKLPLPRPVRVMTAGAPPPPAVIKKMEELG-----FEVTHV-YGLTE 316

Query: 126 TSGIATM-------ENSFAGSRNI-----GSAGALAPGVEALIVSVDTQKPLPPN--QLG 171
           T G  T+       +   A  R       G        V+  +V  +T K +P +   +G
Sbjct: 317 TYGPITVCEWKPEWDALPAEERARLKARQGVRYVGLEEVD--VVDPETMKDVPRDGKTIG 374

Query: 172 EIWLRGPNMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELI 225
           EI +RG  +M+GYY N +AT+      GW H+GDL     DG + + DR K++I
Sbjct: 375 EIVMRGNTVMKGYYKNPEATEEAF-AGGWFHSGDLAVVHPDGYIEIKDRSKDII 427

This family includes fatty acyl-CoA synthetases that can activate medium to long-chain fatty acids. These enzymes catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family has been shown to catalyze the long-chain fatty acid, myristoyl acid. Also included in this family are acyl activating enzymes from Arabidopsis, which contains a large number of proteins from this family with up to 63 different genes, many of which are uncharacterized. Length = 520

>gnl|CDD|181644 PRK09088, PRK09088, acyl-CoA synthetase; Validated

 Score =  104 bits (262), Expect = 5e-26
 Identities = 63/217 (29%), Positives = 95/217 (43%), Gaps = 15/217 (6%)

Query: 15  VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHR--VTHIWVVPPLI 72
            FLC  P+FH+ GL       L  G  I++   F+ +  L  +      +TH + VP + 
Sbjct: 178 SFLCDAPMFHIIGLITSVRPVLAVGGSILVSNGFEPKRTLGRLGDPALGITHYFCVPQMA 237

Query: 73  LALAKHGLVKKFDLSSLK----LVGSGAAPLGKELMEECAKNVPSATVIQVGYGLTETSG 128
            A         FD ++L+    L   GA    ++++      +P       G+G++E   
Sbjct: 238 QAFRAQ---PGFDAAALRHLTALFTGGAPHAAEDILGWLDDGIPMVD----GFGMSEAGT 290

Query: 129 IATMENSFAGSRN-IGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNN 187
           +  M       R   G+AG   P V+  +V  D     P    GE+ LRGPN+  GY+  
Sbjct: 291 VFGMSVDCDVIRAKAGAAGIPTPTVQTRVVD-DQGNDCPAGVPGELLLRGPNLSPGYWRR 349

Query: 188 EQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKEL 224
            QAT       GW  TGD+   D DG  +VVDR K++
Sbjct: 350 PQATARAFTGDGWFRTGDIARRDADGFFWVVDRKKDM 386

Length = 488

>gnl|CDD|213274 cd05906, A_NRPS_TubE_like, The adenylation domain (A domain) of a family of nonribosomal peptide synthetases (NRPSs) synthesizing toxins and antitumor agents

 Score =  103 bits (260), Expect = 1e-25
 Identities = 67/252 (26%), Positives = 102/252 (40%), Gaps = 48/252 (19%)

Query: 15  VFLCVLPLFHVFGL------AVIT-CGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWV 67
           V L  +PL HV G+       V   C Q+   +  IL    D   +L  I+++RVT  W 
Sbjct: 210 VSLNWMPLDHVGGIVMLHLRDVYLGCQQIHVPTDYILA---DPLRWLDLIDRYRVTITWA 266

Query: 68  VPP-----LILALAKHGLVKKFDLSSLKLVGSGA----APLGKELMEECAKNVPSATVIQ 118
             P     L+    +    + +DLSSL+ + +      A   +  +E  A     A  I+
Sbjct: 267 --PNFAFALLNDALERIEDRSWDLSSLRYIINAGEAVVAKTIRRFLELLAPYGLPADAIR 324

Query: 119 VGYGLTETSGIATMENSFAGSRNIG-------------------------SAGALAPGVE 153
             +G++ET    T    F    + G                           G   PGV 
Sbjct: 325 PAFGMSETCSGVTYSRGFRTGPDTGGVLVDSLTGPLRFAAADHPEAVTFVELGRPIPGVA 384

Query: 154 ALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDG 213
             IV  +    LP  ++G + +RGP +  GYY N +A      + GW  TGDLG+   DG
Sbjct: 385 IRIVD-EDGALLPEGEVGRLQVRGPTVTSGYYRNPEANAEAFTEDGWFRTGDLGFLH-DG 442

Query: 214 QLYVVDRIKELI 225
           +L +  R K++I
Sbjct: 443 RLTITGREKDMI 454

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino)-acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family includes NRPSs that synthesize toxins and antitumor agents; for example, TubE for Tubulysine, CrpA for cryptophycin, TdiA for terrequinone A, KtzG for kutzneride, and Vlm1/Vlm2 for Valinomycin. Nonribosomal peptide synthetases are large multifunctional enzymes which synthesize many therapeutically useful peptides. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 560

>gnl|CDD|213310 cd05945, DltA, D-alanine:D-alanyl carrier protein ligase (DltA)

 Score =  102 bits (256), Expect = 2e-25
 Identities = 57/209 (27%), Positives = 94/209 (44%), Gaps = 17/209 (8%)

Query: 36  LQKGSCIILMAKFDLEMFL---RAIEKHRVTHIWVVPPLILALAKHGLVKKFD---LSSL 89
           L  G+ + ++ K  +   L     +++H +T  WV  P   +L    L ++ +   L SL
Sbjct: 160 LASGATLYVIPKEQIADPLALFEFLKEHGLTV-WVSVPSFASLLL--LSRELNPESLPSL 216

Query: 90  KLVGSGAAPLGKELMEECAKNVPSATVIQVGYGLTETSGIAT---MENSFAGSRNIGSAG 146
           +        L K+L +   +  P+A +I   YG TE +   T   +             G
Sbjct: 217 RTFLFCGEVLPKKLAKALRRRFPNARII-NLYGPTEATVAVTAYEVTPEPLSRNEPLPIG 275

Query: 147 ALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQATK---LTIDKKGWVHT 203
              PG+ ALI+  D  +P+PP + GE+ + GP +  GY NN + T       + + W  T
Sbjct: 276 YPKPGLRALILDED-GRPVPPGEEGELVIAGPQVSPGYLNNPEKTAKAFFQDEGQRWYRT 334

Query: 204 GDLGYFDGDGQLYVVDRIKELIKYKGFQV 232
           GDL Y + DG L  + R    IK  G+++
Sbjct: 335 GDLVYLEDDGLLVYLGRKDFQIKLHGYRI 363

DltA belongs to the class I AMP-forming adenylation domain superfamily, which also includes acetyl-CoA synthetase, luciferase, and the adenylation domains of non-ribosomal synthetases. It catalyzes the two-step activation reaction of D-alanine: the formation of a substrate-AMP molecule as an intermediate, and then the transfer of the amino acid adenylate to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram-positive bacteria. Length = 447

>gnl|CDD|240316 PTZ00216, PTZ00216, acyl-CoA synthetase; Provisional

 Score =  102 bits (257), Expect = 4e-25
 Identities = 51/140 (36%), Positives = 71/140 (50%), Gaps = 18/140 (12%)

Query: 94  SGAAPLG---KELMEECAKNVPSATVIQVGYGLTETSGIATMENSFAGSRNIGSAGALAP 150
           SG  PL    +E +     NV    VIQ G+GLTET     ++    G     + G L  
Sbjct: 435 SGGGPLSAATQEFV-----NVVFGMVIQ-GWGLTETVCCGGIQ--RTGDLEPNAVGQLLK 486

Query: 151 GVEALIVSVD----TQKPLPPNQLGEIWLRGPNMMRGYYNNEQATKLTIDKKGWVHTGDL 206
           GVE  ++  +    T  P P    GEI LRGP + +GYY  E+ T+  +D+ GW HTGD+
Sbjct: 487 GVEMKLLDTEEYKHTDTPEPR---GEILLRGPFLFKGYYKQEELTREVLDEDGWFHTGDV 543

Query: 207 GYFDGDGQLYVVDRIKELIK 226
           G    +G L ++ R+K L K
Sbjct: 544 GSIAANGTLRIIGRVKALAK 563

Length = 700

>gnl|CDD|223952 COG1021, EntE, Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism]

 Score =  100 bits (252), Expect = 2e-24
 Identities = 69/223 (30%), Positives = 101/223 (45%), Gaps = 22/223 (9%)

Query: 13  DYVFLCVLPLFHVFGLAVITC----GQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVV 68
             V+LC LP  H F L+        G    G  ++L      E+    IE+H VT   +V
Sbjct: 230 QTVYLCALPAAHNFPLS---SPGALGVFLAGGTVVLAPDPSPELCFPLIERHGVTVTALV 286

Query: 69  PPLILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVGYGLTETSG 128
           PPL     +    ++ DLSSL+L+  G A L   L    A+ VP+     +G  L +  G
Sbjct: 287 PPLASLWLQAAEWERADLSSLRLLQVGGARLSATL----ARRVPAV----LGCQLQQVFG 338

Query: 129 IATMENSF-----AGSRNIGSAG-ALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMR 182
           +A    ++          I + G  L+P  E  +V  D   P+ P ++GE+  RGP  +R
Sbjct: 339 MAEGLVNYTRLDDPPEIIIHTQGRPLSPDDEVRVVDADGN-PVAPGEVGELLTRGPYTIR 397

Query: 183 GYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELI 225
           GYY   +      D  G+  +GDL   D DG L V  R+K+ I
Sbjct: 398 GYYRAPEHNARAFDADGFYRSGDLVRRDPDGYLVVEGRVKDQI 440

Length = 542

>gnl|CDD|213276 cd05908, A_NRPS_MycA_like, The adenylation domain of nonribosomal peptide synthetases (NRPS) similar to mycosubtilin synthase subunit A (MycA)

 Score = 99.7 bits (249), Expect = 4e-24
 Identities = 72/258 (27%), Positives = 107/258 (41%), Gaps = 51/258 (19%)

Query: 15  VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLR-------AIEKHRVTHIWV 67
           VFL  +PL H  GL          G    LM      +F+R          +HR T I  
Sbjct: 149 VFLSWMPLTHDMGLIGFHLTPTALGINQYLMPT---RLFIRRPLLWLDKASQHRAT-ILS 204

Query: 68  VP----PLILALAKHGLVKKFDLSSLKLVGSGAAP----LGKELMEECAKNVPSATVIQV 119
            P      +L   K   +  +DLSS++L+ +GA P    L +E +E+ A        +  
Sbjct: 205 SPNFGYKYLLKHFKTEKIIDWDLSSVRLIFNGAEPISADLCEEFLEKMAPFGLRPNAMYP 264

Query: 120 GYGLTETSGIAT----------------------------MENSFAGSRNIGSAGALAPG 151
            YGL E +   +                             +NS   + +    G+   G
Sbjct: 265 VYGLAEATLAVSFPKPGEPFKTVCLDRNHLKVGVKIIEIDPKNS--DAISFVEVGSPIDG 322

Query: 152 VEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDG 211
            E  IV  D  + LP   +G I ++G N+  GYYNN +ATK +I   GW+ TGDLG+   
Sbjct: 323 CEIRIVD-DAGEVLPDRTIGHIQIKGDNVTSGYYNNPEATKKSITPDGWLKTGDLGFLR- 380

Query: 212 DGQLYVVDRIKELIKYKG 229
           +G+L +  R K++I   G
Sbjct: 381 NGRLVITGRAKDIIIVNG 398

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as (amino)-acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family includes NRPS similar to mycosubtilin synthase subunit A (MycA). Mycosubtilin, which is characterized by a beta-amino fatty acid moiety linked to the circular heptapeptide Asn-Tyr-Asn-Gln-Pro-Ser-Asn, belongs to the iturin family of lipopeptide antibiotics. The mycosubtilin synthase subunit A (MycA) combines functional domains derived from peptide synthetases, amino transferases, and fatty acid synthases. Nonribosomal peptide synthetases are large multifunction enzymes that synthesize many therapeutically useful peptides. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 499

>gnl|CDD|180393 PRK06087, PRK06087, short chain acyl-CoA synthetase; Reviewed

 Score = 99.4 bits (248), Expect = 5e-24
 Identities = 59/198 (29%), Positives = 96/198 (48%), Gaps = 6/198 (3%)

Query: 39  GSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSSLKLVGSGAAP 98
           G+  +L+  F  +  L  +E+ R T +    P I  L      +  DLS+L+    G   
Sbjct: 254 GARSVLLDIFTPDACLALLEQQRCTCMLGATPFIYDLLNLLEKQPADLSALRFFLCGGTT 313

Query: 99  LGKELMEECAK-NVPSATVIQVGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIV 157
           + K++  EC +  +   +V    YG TE+S  A +      SR + + G  A GVE  +V
Sbjct: 314 IPKKVARECQQRGIKLLSV----YGSTESSPHAVVNLDDPLSRFMHTDGYAAAGVEIKVV 369

Query: 158 SVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYV 217
             + +K LPP   GE   RGPN+  GY +  + T   +D++GW ++GDL   D  G + +
Sbjct: 370 D-EARKTLPPGCEGEEASRGPNVFMGYLDEPELTARALDEEGWYYSGDLCRMDEAGYIKI 428

Query: 218 VDRIKELIKYKGFQVTSN 235
             R K++I   G  ++S 
Sbjct: 429 TGRKKDIIVRGGENISSR 446

Length = 547

>gnl|CDD|213278 cd05910, FACL_like_1, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 97.8 bits (244), Expect = 1e-23
 Identities = 72/250 (28%), Positives = 107/250 (42%), Gaps = 33/250 (13%)

Query: 8   TAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILM-----AKFDLEMFLRAIEKHRV 62
             G+ D   L   P F +FG A      L   + I  M     A  D     +AI +   
Sbjct: 124 REGDRD---LAAFPPFALFGPA------LGVTTVIPAMDPTAPAALDPAKLAQAIREIGA 174

Query: 63  THIWVVPPLILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVGYG 122
           + ++  P L+  +A++       L SL+ V S  AP+  +L+     N+     I   YG
Sbjct: 175 SCVFGSPALLKNVARYCEENGIQLPSLRRVLSAGAPVPPDLLRRFVANLMPEAEIHTPYG 234

Query: 123 LTETSGIATMENS--FAGSRNIGSAGA------LAPGVEALIV--------SVDTQKPLP 166
            TE   +A++E     A S     AGA        PG++  I+        S D    LP
Sbjct: 235 ATEALPVASIEGREVLAESAEPPEAGAGVCVGHPVPGIDVRIIPIDDGPIASWDDDIELP 294

Query: 167 PNQLGEIWLRGPNMMRGYYNNEQATKLT---IDKKGWVHTGDLGYFDGDGQLYVVDRIKE 223
           P ++GEI + GP++ R YYN  +ATKL       + W   GDLGYFD  G+L+   R   
Sbjct: 295 PGEVGEIIVSGPHVTREYYNRPEATKLAKISDGNRIWHRMGDLGYFDDQGRLWFCGRKAH 354

Query: 224 LIKYKGFQVT 233
            ++  G  + 
Sbjct: 355 RVETAGGTLF 364

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 455

>gnl|CDD|235279 PRK04319, PRK04319, acetyl-CoA synthetase; Provisional

 Score = 97.7 bits (244), Expect = 2e-23
 Identities = 72/216 (33%), Positives = 103/216 (47%), Gaps = 38/216 (17%)

Query: 40  SCIILMAKFDLEMFLRAIEKHRVTHIW-VVPPLILALAKHG--LVKKFDLSSLKLVGSGA 96
           + +I   +F  E + R +E ++VT +W   P  I  L   G  LVKK+DLSSL+ + S  
Sbjct: 274 TNVIDGGRFSPERWYRILEDYKVT-VWYTAPTAIRMLMGAGDDLVKKYDLSSLRHILSVG 332

Query: 97  APLGKELMEECAKNVPSATVIQVG---YGL--------TETSGIATMENSFAGSRNIGSA 145
            PL  E             V++ G   +GL        TET GI  + N  A     GS 
Sbjct: 333 EPLNPE-------------VVRWGMKVFGLPIHDNWWMTETGGI-MIANYPAMDIKPGSM 378

Query: 146 GALAPGVEALIVSVDTQKPLPPNQLGEIWLRG--PNMMRGYYNNEQATKLTIDKKGWVHT 203
           G   PG+EA IV  D    LPPN++G + ++   P+MMRG +NN +  +       W  +
Sbjct: 379 GKPLPGIEAAIVD-DQGNELPPNRMGNLAIKKGWPSMMRGIWNNPEKYESYF-AGDWYVS 436

Query: 204 GDLGYFDGDGQLYVVDRIKELIKYKG-----FQVTS 234
           GD  Y D DG  +   R+ ++IK  G     F+V S
Sbjct: 437 GDSAYMDEDGYFWFQGRVDDVIKTSGERVGPFEVES 472

Length = 570

>gnl|CDD|213319 cd05972, MACS_like, Medium-chain acyl-CoA synthetase (MACS or ACSM)

 Score = 95.5 bits (238), Expect = 7e-23
 Identities = 61/208 (29%), Positives = 96/208 (46%), Gaps = 19/208 (9%)

Query: 34  GQLQKGSCIIL--MAKFDLEMFLRAIEKHRVTHIWVVPPLIL-ALAKHGLVKKFDLSSLK 90
                G+ + +    +FD E  L  +E++ VT  +  PP     L +  L   +D S L+
Sbjct: 143 APWLLGAAVFVYHGRRFDAERTLELLERYGVT-TFCAPPTAYRMLLQQDL-SSYDFSHLR 200

Query: 91  LVGSGAAPLGKELMEECAKNVPSATVIQV--GYGLTETSGIATMENSFAGSRNIGSAGAL 148
            V S   PL  E+++       +AT + +  GYG TET     + N        GS G  
Sbjct: 201 HVVSAGEPLNPEVID----WWRAATGLPIRDGYGQTET--GLLVANFPGMEVKPGSMGRP 254

Query: 149 APGVEALIVSVDTQKPLPPNQLGEIWL----RGPNMMRGYYNNEQATKLTIDKKGWVHTG 204
           APG    I+  +  + LPP + G+I +    R P + RGY  + + T+ TI +  W  TG
Sbjct: 255 APGYRVAIIDDEGNE-LPPGEEGDIAVRVKPRPPGLFRGYLKDPEKTEATI-RGDWYLTG 312

Query: 205 DLGYFDGDGQLYVVDRIKELIKYKGFQV 232
           D    D DG  + V R  ++IK  G+++
Sbjct: 313 DRAIKDEDGYFWFVGRADDVIKSSGYRI 340

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The acyl-CoA is a key intermediate in many important biosynthetic and catabolic processes. Length = 430

>gnl|CDD|233550 TIGR01733, AA-adenyl-dom, amino acid adenylation domain

 Score = 92.7 bits (231), Expect = 6e-22
 Identities = 52/202 (25%), Positives = 84/202 (41%), Gaps = 22/202 (10%)

Query: 45  MAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSSLKLVGSGAAPLGKELM 104
             + D  +    I +H VT + + P L+  LA         L+SL+LV  G   L   L+
Sbjct: 196 EERDDAALLAALIAEHPVTVLNLTPSLLALLAAAL---PPALASLRLVILGGEALTPALV 252

Query: 105 EECAKNVPSATVIQVGYGLTETSGIATM------ENSFAGSRNIGSAGALAPGVEALIVS 158
           +      P A +I   YG TET+  +T       +        IG            ++ 
Sbjct: 253 DRWRARGPGARLIN-LYGPTETTVWSTATLVDPDDAPRESPVPIGRP---LANTRLYVLD 308

Query: 159 VDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQATK--------LTIDKKGWVHTGDLGYFD 210
            D  +P+P   +GE+++ GP + RGY N  + T            D      TGDL  + 
Sbjct: 309 -DDLRPVPVGVVGELYIGGPGVARGYLNRPELTAERFVPDPFAGGDGARLYRTGDLVRYL 367

Query: 211 GDGQLYVVDRIKELIKYKGFQV 232
            DG L  + RI + +K +G+++
Sbjct: 368 PDGNLEFLGRIDDQVKIRGYRI 389

This model represents a domain responsible for the specific recognition of amino acids and activation as adenylyl amino acids. The reaction catalyzed is aa + ATP -> aa-AMP + PPi. These domains are usually found as components of multi-domain non-ribosomal peptide synthetases and are usually called "A-domains" in that context (for a review, see ). A-domains are almost invariably followed by "T-domains" (thiolation domains, pfam00550) to which the amino acid adenylate is transferred as a thiol-ester to a bound pantetheine cofactor with the release of AMP (these are also called peptide carrier proteins, or PCPs. When the A-domain does not represent the first module (corresponding to the first amino acid in the product molecule) it is usually preceded by a "C-domain" (condensation domain, pfam00668) which catalyzes the ligation of two amino acid thiol-esters from neighboring modules. This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group. Length = 409

>gnl|CDD|233807 TIGR02275, DHB_AMP_lig, 2,3-dihydroxybenzoate-AMP ligase

 Score = 92.9 bits (231), Expect = 8e-22
 Identities = 66/236 (27%), Positives = 104/236 (44%), Gaps = 18/236 (7%)

Query: 4   MDQETAGELDYVFLCVLPLFHVFGLAVI-TCGQLQKGSCIILMAKFDLEMFLRAIEKHRV 62
           + Q+T       +LC LP  H + L+     G    G C++L            IE+H+V
Sbjct: 220 LTQQT------RYLCALPAAHNYPLSSPGALGVFYAGGCVVLAPDPSPTDCFPLIERHKV 273

Query: 63  THIWVVPPLILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSA---TVIQV 119
           T   +VPP +    +     + DLSSLKL+  G    G +     A+ VP+     + QV
Sbjct: 274 TVTALVPPAVALWMQAASKSRADLSSLKLLQVG----GAKFSAAAARRVPAVFGCQLQQV 329

Query: 120 GYGLTETSGIATMENSFAGSRNIGSAG-ALAPGVEALIVSVDTQKPLPPNQLGEIWLRGP 178
            +G+ E     T  +  A      + G  ++P  E  +V  D   P+ P + G +  RGP
Sbjct: 330 -FGMAEGLVNYTRLDDPA-EIIFTTQGRPMSPDDEVRVVD-DHGNPVAPGETGMLLTRGP 386

Query: 179 NMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTS 234
              RGYY   +      D +G+ +TGDL     +G + VV R K+ I   G ++ +
Sbjct: 387 YTFRGYYKAPEHNAAAFDAEGFYYTGDLVRLTPEGYIVVVGRAKDQINRGGEKIAA 442

Proteins in this family belong to the AMP-binding enzyme family (pfam00501). Members activate 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate; many are involved in synthesis of siderophores such as enterobactin, vibriobactin, vulnibactin, etc. The most closely related proteine believed to differ in function activates salicylate rather than DHB [Transport and binding proteins, Cations and iron carrying compounds]. Length = 526

>gnl|CDD|178337 PLN02736, PLN02736, long-chain acyl-CoA synthetase

 Score = 92.5 bits (230), Expect = 2e-21
 Identities = 53/148 (35%), Positives = 80/148 (54%), Gaps = 21/148 (14%)

Query: 89  LKLVGSGAAPLGKELME---ECAKNVPSATVIQVGYGLTETSG-IATMENSFAGSRNIGS 144
           ++ + SGA+PL  ++ME    C        V++ GYG+TETS  I+ M+    G    G 
Sbjct: 378 VRFMSSGASPLSPDVMEFLRICF----GGRVLE-GYGMTETSCVISGMDE---GDNLSGH 429

Query: 145 AGALAPGVEALIVSV------DTQKPLPPNQLGEIWLRGPNMMRGYYNNEQATKLTIDKK 198
            G+  P  E  +V V         +P P    GEI +RGP + +GYY +E  T+  ID+ 
Sbjct: 430 VGSPNPACEVKLVDVPEMNYTSEDQPYPR---GEICVRGPIIFKGYYKDEVQTREVIDED 486

Query: 199 GWVHTGDLGYFDGDGQLYVVDRIKELIK 226
           GW+HTGD+G +   G+L ++DR K + K
Sbjct: 487 GWLHTGDIGLWLPGGRLKIIDRKKNIFK 514

Length = 651

>gnl|CDD|213282 cd05914, FACL_like_3, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 91.6 bits (228), Expect = 2e-21
 Identities = 66/232 (28%), Positives = 101/232 (43%), Gaps = 59/232 (25%)

Query: 17  LCVLPLF----HVFGLAVITCGQLQKGSCIILMA----------KFDLEMFLRAIEKHRV 62
           LC+LPL     ++ G+       L  G+ +IL+             D   F+ A+ + + 
Sbjct: 157 LCLLPLATLLENIAGVYA----PLLMGATVILVPLAELGLSGSSGLDPAQFVAALSRWQP 212

Query: 63  THIWVVPPLILAL---AKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAK-NVPSATVIQ 118
             + +VP L++AL    + G +      SL+ V  G A +   L++      +P    + 
Sbjct: 213 HSLILVPQLLMALVAAVEQGPLP---PESLRFVAVGGARVSPSLLQRARALGLP----VY 265

Query: 119 VGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQL-----GEI 173
            GYGL+E + + ++ N+    R  GS G                KPLP  Q+     GEI
Sbjct: 266 EGYGLSECASVVSL-NTPGADR-PGSVG----------------KPLPHVQVSIANDGEI 307

Query: 174 WLRGPNMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELI 225
            +RG  M+ GY     AT    D   W  TGDLG+ D +G LY+  R K LI
Sbjct: 308 LVRGSLML-GYLGEPPAT----DD--WWATGDLGHLDEEGYLYINGRKKNLI 352

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 448

>gnl|CDD|213296 cd05930, A_NRPS, The adenylation domain of nonribosomal peptide synthetases (NRPS)

 Score = 91.0 bits (227), Expect = 3e-21
 Identities = 54/209 (25%), Positives = 90/209 (43%), Gaps = 22/209 (10%)

Query: 39  GSCIILMAK---FDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSSLKLVGSG 95
           G+ ++L       D E     + +HR+T + +VP L+ AL      +   L SL+LV  G
Sbjct: 159 GATLVLAPPEVLRDPEALAELLREHRITVLHLVPSLLRALLDAL--EPAALPSLRLVIVG 216

Query: 96  AAPLGKELMEECAKNVPSATVIQVGYGLTETSGIATM-----ENSFAGSRNIGSAGALAP 150
              L  EL+    +  P A ++   YG TET+   T      ++   GS  IG       
Sbjct: 217 GEALPAELVRRWRELFPGARLVN-AYGPTETTVDVTYHEVDPDDLDGGSVPIGRP---IA 272

Query: 151 GVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQATK-----LTIDKKG--WVHT 203
                ++  +  +P+P    GE+++ G  + RGY N  + T            G     T
Sbjct: 273 NTRVYVLD-EDLRPVPVGVPGELYIGGAGVARGYLNRPELTAERFVPDPFGGPGERLYRT 331

Query: 204 GDLGYFDGDGQLYVVDRIKELIKYKGFQV 232
           GDL  +  DG L  + R  + +K +G+++
Sbjct: 332 GDLARWLPDGNLEFLGRADDQVKIRGYRI 360

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester bond to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 445

>gnl|CDD|213285 cd05918, A_NRPS_SidN3_like, The adenylation (A) domain of siderophore-synthesizing nonribosomal peptide synthetases (NRPS)

 Score = 90.7 bits (226), Expect = 4e-21
 Identities = 47/193 (24%), Positives = 78/193 (40%), Gaps = 23/193 (11%)

Query: 50  LEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAK 109
           LE     + + RVT   + P    +L    L+   D+ SL+ +  G     + L++  +K
Sbjct: 177 LEDLAEFLNRLRVTVAHLTP----SLL--ALLDPEDVPSLRTLILGGEACPQALVDRWSK 230

Query: 110 NVPSATVIQVGYGLTETSGIATM-ENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPN 168
                  +   YG TE +  AT    +     NIG      P     ++  D +  +P  
Sbjct: 231 PR----RLLNTYGPTEATVTATASRLTPGKPVNIGRP---LPNYTCWVLDPDLEPLVPIG 283

Query: 169 QLGEIWLRGPNMMRGYYNNEQAT--KLTIDKKGWV-------HTGDLGYFDGDGQLYVVD 219
            +GE+ + GP + RGY N  + T  K   D             TGDL  +  DG L  + 
Sbjct: 284 AVGELCIGGPGVARGYLNRPELTAEKFIPDPFWLNNPGGRIYRTGDLVRYLEDGSLEFLG 343

Query: 220 RIKELIKYKGFQV 232
           R  + +K +G ++
Sbjct: 344 RKDDQVKIRGQRI 356

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family of siderophore-synthesizing NRPS includes the third adenylation domain of SidN from the endophytic fungus Neotyphodium lolii, ferrichrome siderophore synthetase, HC-toxin synthetase, and enniatin synthase. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 447

>gnl|CDD|213316 cd05969, MACS_like_4, Uncharacterized subfamily of Acetyl-CoA synthetase like family (ACS)

 Score = 90.6 bits (225), Expect = 5e-21
 Identities = 65/208 (31%), Positives = 98/208 (47%), Gaps = 22/208 (10%)

Query: 42  IILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHG--LVKKFDLSSLKLVGSGAAPL 99
           ++   +FD E +   +E+ +VT  +  P  +  L + G  L  ++DLSSL+ + S   PL
Sbjct: 160 VVDEGEFDAERWYGILEEEKVTVWYTAPTALRMLMRAGPELAARYDLSSLRHIASVGEPL 219

Query: 100 GKELME--ECAKNVPSATVIQVGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIV 157
             E++   E    +P    I   +  TET  I          +  GS G   PG+EA ++
Sbjct: 220 NPEVVVWGEKVLGMP----IHDTWWQTETGAIMIANYPGIPVKP-GSMGRPLPGIEAAVI 274

Query: 158 SVD---TQKPLPPNQLGEIWLRG--PNMMRGYYNNEQATKLT-IDKKGWVHTGDLGYFDG 211
             D         P Q+GE+ L+   P+M RGY  NE+    + +D  GW  TGDL Y D 
Sbjct: 275 ERDGDGLTPVTGPGQVGELALKPGWPSMFRGYLGNEERYASSFVD--GWYLTGDLAYRDE 332

Query: 212 DGQLYVVDRIKELIKYKG-----FQVTS 234
           DG  + V R  ++IK  G     F+V S
Sbjct: 333 DGYFWFVGRADDVIKTAGHLVGPFEVES 360

This family is most similar to acetyl-CoA synthetase. Acetyl-CoA synthetase (ACS) catalyzes the formation of acetyl-CoA from acetate, CoA, and ATP. Synthesis of acetyl-CoA is carried out in a two-step reaction. In the first step, the enzyme catalyzes the synthesis of acetyl-AMP intermediate from acetate and ATP. In the second step, acetyl-AMP reacts with CoA to produce acetyl-CoA. This enzyme is only present in bacteria. Length = 443

>gnl|CDD|181195 PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated

 Score = 88.2 bits (219), Expect = 3e-20
 Identities = 42/118 (35%), Positives = 59/118 (50%), Gaps = 7/118 (5%)

Query: 121 YGLTET-SGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRG-- 177
           YG+TET  GI    +     R   S G      EA I     + PLP  ++GEI ++G  
Sbjct: 319 YGMTETIVGIIG--DRPGDKRRWPSIGRPGFCYEAEIRDDHNR-PLPAGEIGEICIKGVP 375

Query: 178 -PNMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTS 234
              + + YY + +AT   ++  GW+HTGD GY D +G  Y VDR   +IK  G  V+ 
Sbjct: 376 GKTIFKEYYLDPKATAKVLEADGWLHTGDTGYVDEEGFFYFVDRRCNMIKRGGENVSC 433

Length = 517

>gnl|CDD|235625 PRK05852, PRK05852, acyl-CoA synthetase; Validated

 Score = 88.4 bits (219), Expect = 4e-20
 Identities = 64/220 (29%), Positives = 95/220 (43%), Gaps = 13/220 (5%)

Query: 19  VLPLFHVFGLAVITCGQLQKGSCIILMA--KFDLEMFLRAIEKHRVTHIWVVPPLILALA 76
           V+PL+H  GL       L  G  ++L A  +F    F   I+    T    VP +   L 
Sbjct: 223 VMPLYHGHGLIAALLATLASGGAVLLPARGRFSAHTFWDDIKAVGATWYTAVPTIHQILL 282

Query: 77  KHGLVKKFDL--SSLKLVGSGAAPLGKELMEECAKNVPSATVIQVGYGLTETSGIATMEN 134
           +    +      ++L+ + S +APL  E   +  +   +A V+   +G+TE +   T   
Sbjct: 283 ERAATEPSGRKPAALRFIRSCSAPLTAE-TAQALQTEFAAPVVC-AFGMTEATHQVTTTQ 340

Query: 135 --SFAGSRNIGSAGALAP---GVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQ 189
                 + N   +  L     G +  IV  D   PLP   +GE+WLRG  ++RGY  +  
Sbjct: 341 IEGIGQTENPVVSTGLVGRSTGAQIRIVGSDGL-PLPAGAVGEVWLRGTTVVRGYLGDPT 399

Query: 190 ATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKG 229
            T       GW+ TGDLG     G L +  RIKELI   G
Sbjct: 400 ITAANF-TDGWLRTGDLGSLSAAGDLSIRGRIKELINRGG 438

Length = 534

>gnl|CDD|236096 PRK07787, PRK07787, acyl-CoA synthetase; Validated

 Score = 87.7 bits (218), Expect = 4e-20
 Identities = 65/218 (29%), Positives = 100/218 (45%), Gaps = 14/218 (6%)

Query: 20  LPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHG 79
           LPLFHV GL +   G L+ G+  +   +   E + +A+ +   T  + VP +   +A   
Sbjct: 176 LPLFHVHGLVLGVLGPLRIGNRFVHTGRPTPEAYAQALSE-GGTLYFGVPTVWSRIAADP 234

Query: 80  LVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQV--GYGLTETSGIATMENSFA 137
              +  L   +L+ SG+A L   + +  A      T  +    YG+TET  + T+     
Sbjct: 235 EAAR-ALRGARLLVSGSAALPVPVFDRLAA----LTGHRPVERYGMTET--LITLSTRAD 287

Query: 138 GSRNIGSAGALAPGVEALIVSVDTQKPLP--PNQLGEIWLRGPNMMRGYYNNEQATKLTI 195
           G R  G  G    GVE  +V  +   P+P     +GE+ +RGP +  GY N   AT    
Sbjct: 288 GERRPGWVGLPLAGVETRLVD-EDGGPVPHDGETVGELQVRGPTLFDGYLNRPDATAAAF 346

Query: 196 DKKGWVHTGDLGYFDGDGQLYVVDRIK-ELIKYKGFQV 232
              GW  TGD+   D DG   +V R   +LIK  G+++
Sbjct: 347 TADGWFRTGDVAVVDPDGMHRIVGRESTDLIKSGGYRI 384

Length = 471

>gnl|CDD|213317 cd05970, MACS_AAE_MA_like, Medium-chain acyl-CoA synthetase (MACS) of AAE_MA like

 Score = 86.3 bits (214), Expect = 2e-19
 Identities = 65/209 (31%), Positives = 97/209 (46%), Gaps = 20/209 (9%)

Query: 34  GQLQKGSCIIL--MAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSSLKL 91
           GQ   G+ + +    KFD +  L  IEK+ VT  +  PP I        + K+DLSSL+ 
Sbjct: 247 GQWIAGAAVFVYDYDKFDPKNLLEKIEKYGVT-TFCAPPTIYRFLIKEDLSKYDLSSLRY 305

Query: 92  VGSGAAPLGKELMEECAKNVPSATVIQV--GYGLTETS-GIATMENSFAGSRNIGSAGAL 148
             +   PL  E+     +     T I++  G+G TET+  IAT           GS G  
Sbjct: 306 CTTAGEPLNPEVFNTFKE----KTGIKLMEGFGQTETTLTIATFPWMEPKP---GSMGKP 358

Query: 149 APGVEALIVSVDTQKPLPPNQLGEIWLRGPN-----MMRGYYNNEQATKLTIDKKGWVHT 203
           +PG +  I+  D  K     + GEI +R  +     +  GYY + + T       G+ HT
Sbjct: 359 SPGYDIDIIDPDG-KSCEVGEEGEIVIRTSDGKPLGLFMGYYRDPERTAEVW-HDGYYHT 416

Query: 204 GDLGYFDGDGQLYVVDRIKELIKYKGFQV 232
           GD  + D DG L+ V R  +LIK  G+++
Sbjct: 417 GDTAWMDEDGYLWFVGRADDLIKSSGYRI 445

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This family of MACS enzymes is found in archaea and bacteria. It is represented by the acyl-adenylating enzyme from Methanosarcina acetivorans (AAE_MA). AAE_MA is most active with propionate, butyrate, and the branched analogs: 2-methyl-propionate, butyrate, and pentanoate. The specific activity is weaker for smaller or larger acids. Length = 537

>gnl|CDD|215464 PLN02860, PLN02860, o-succinylbenzoate-CoA ligase

 Score = 86.4 bits (214), Expect = 2e-19
 Identities = 68/244 (27%), Positives = 108/244 (44%), Gaps = 33/244 (13%)

Query: 13  DYVFLCVLPLFHVFGLA-VITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPL 71
           D V+L   PL H+ GL+  +    L  G+C +L+ KFD +  L+AI++H VT +  VP +
Sbjct: 213 DDVYLHTAPLCHIGGLSSALA--MLMVGACHVLLPKFDAKAALQAIKQHNVTSMITVPAM 270

Query: 72  ILALAKHGLVKKFDLS--SLKLVGSGAAPLGKELMEECAKNVPSATVIQVGYGLTET-SG 128
           +  L              S++ + +G   L   L+ +  K  P+A +    YG+TE  S 
Sbjct: 271 MADLISLTRKSMTWKVFPSVRKILNGGGSLSSRLLPDAKKLFPNAKLFS-AYGMTEACSS 329

Query: 129 IATM-------------------ENSFAGSRNIGS-AGALAPGVEALIVSVDTQKPLPPN 168
           +  M                     S +  +  G   G  AP VE  I           +
Sbjct: 330 LTFMTLHDPTLESPKQTLQTVNQTKSSSVHQPQGVCVGKPAPHVELKI------GLDESS 383

Query: 169 QLGEIWLRGPNMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYK 228
           ++G I  RGP++M GY+     T   +   GW+ TGD+G+ D  G L+++ R  + IK  
Sbjct: 384 RVGRILTRGPHVMLGYWGQNSETASVLSNDGWLDTGDIGWIDKAGNLWLIGRSNDRIKTG 443

Query: 229 GFQV 232
           G  V
Sbjct: 444 GENV 447

Length = 563

>gnl|CDD|178049 PLN02430, PLN02430, long-chain-fatty-acid-CoA ligase

 Score = 85.3 bits (211), Expect = 4e-19
 Identities = 57/144 (39%), Positives = 75/144 (52%), Gaps = 14/144 (9%)

Query: 89  LKLVGSGAAPLGKELMEECAKNVPSATVIQVGYGLTETSGIATM----ENSFAGSRNIGS 144
           L+L+ SG APL  E+ EE  +    A V+Q GYGLTET G  T+    E        +G+
Sbjct: 385 LRLLISGGAPLSTEI-EEFLRVTSCAFVVQ-GYGLTETLGPTTLGFPDEMCM-----LGT 437

Query: 145 AGALAPGVEALIVSVDTQ--KPLPPNQLGEIWLRGPNMMRGYYNNEQATKLTIDKKGWVH 202
            GA A   E  +  V      PL     GEI +RG  +  GYY N + T+  + K GW H
Sbjct: 438 VGAPAVYNELRLEEVPEMGYDPLGEPPRGEICVRGKCLFSGYYKNPELTEEVM-KDGWFH 496

Query: 203 TGDLGYFDGDGQLYVVDRIKELIK 226
           TGD+G    +G L ++DR K LIK
Sbjct: 497 TGDIGEILPNGVLKIIDRKKNLIK 520

Length = 660

>gnl|CDD|213286 cd05919, BCL_like, Benzoate CoA ligase (BCL) and similar adenylate forming enzymes

 Score = 83.9 bits (208), Expect = 9e-19
 Identities = 66/221 (29%), Positives = 102/221 (46%), Gaps = 11/221 (4%)

Query: 15  VFLCVLPLFHVFGLAVITCGQLQKGSCIILM-AKFDLEMFLRAIEKHRVTHIWVVPPLIL 73
                  LF  +GL       L  G+  +L+      E  L  + +HR T ++ VP L  
Sbjct: 135 RIFSSSKLFFAYGLGNSLLFPLFSGASAVLLPGWPTPEAVLDLLARHRPTVLFGVPALYR 194

Query: 74  ALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQV--GYGLTETSGIAT 131
           AL + G        S++L  S    L   L E  A+    AT I++  G G TE   I  
Sbjct: 195 ALLESGAGSAPLFRSVRLCVSAGEALPAGLAERWAE----ATGIEILDGIGSTEVLHI-F 249

Query: 132 MENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQAT 191
           + N    +R  G+ G   PG EA +V  ++ + +P   +G++W+RGP++  GY+N  + T
Sbjct: 250 ISNRPGAAR-PGTTGRPVPGYEARLVD-ESGREVPAGTVGDLWVRGPSLAPGYWNLPEKT 307

Query: 192 KLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 232
           + T+ + GW+ TGD    D DG      R  ++IK  G  V
Sbjct: 308 QRTL-RDGWLRTGDRFSRDADGWYRYQGRADDMIKVSGQWV 347

This family contains benzoate CoA ligase (BCL) and related ligases that catalyze the acylation of benzoate derivatives, 2-aminobenzoate and 4-hydroxybenzoate. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Xenobiotic aromatic compounds are also a major class of man-made pollutants. Some bacteria use benzoate as the sole source of carbon and energy through benzoate degradation. Benzoate degradation starts with its activation to benzoyl-CoA by benzoate CoA ligase. The reaction catalyzed by benzoate CoA ligase proceeds via a two-step process; the first ATP-dependent step forms an acyl-AMP intermediate, and the second step forms the acyl-CoA ester with release of the AMP. Length = 436

>gnl|CDD|236091 PRK07768, PRK07768, long-chain-fatty-acid--CoA ligase; Validated

 Score = 83.5 bits (207), Expect = 1e-18
 Identities = 67/246 (27%), Positives = 100/246 (40%), Gaps = 46/246 (18%)

Query: 20  LPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRA-------IEKHRVTHIWVVPPLI 72
           LPLFH  G+       +  G+ ++ +   D   FLR        I K+R T +   P   
Sbjct: 201 LPLFHDMGMVGFLTVPMYFGAELVKVTPMD---FLRDPLLWAELISKYRGT-MTAAPNFA 256

Query: 73  LALAKHGLVKK-----FDLSSLKLVGSGAAPLGKELMEE-CAKNVP---SATVIQVGYGL 123
            AL    L ++     FDLSSL+   +GA P+    +E+              I   YG+
Sbjct: 257 YALLARRLRRQAKPGAFDLSSLRFALNGAEPIDPADVEDLLDAGARFGLRPEAILPAYGM 316

Query: 124 TETSGIATMENSFAG------------------------SRNIGSAGALAPGVEALIVSV 159
            E +   +     AG                        +R + + G   PG+E  +V  
Sbjct: 317 AEATLAVSFSPCGAGLVVDEVDADLLAALRRAVPATKGNTRRLATLGPPLPGLEVRVVDE 376

Query: 160 DTQKPLPPNQLGEIWLRGPNMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVD 219
           D Q  LPP  +G I LRG ++  GY           D  GW+ TGDLGY   +G++ V  
Sbjct: 377 DGQ-VLPPRGVGVIELRGESVTPGYL-TMDGFIPAQDADGWLDTGDLGYLTEEGEVVVCG 434

Query: 220 RIKELI 225
           R+K++I
Sbjct: 435 RVKDVI 440

Length = 545

>gnl|CDD|213291 cd05924, FACL_like_5, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 82.7 bits (205), Expect = 2e-18
 Identities = 60/226 (26%), Positives = 98/226 (43%), Gaps = 20/226 (8%)

Query: 6   QETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILM--AKFDLEMFLRAIEKHRVT 63
           Q  AG     FL   PL H  G  +     L  G  ++L+   KFD +   R +EKHRV 
Sbjct: 51  QVAAGGAGTRFLPACPLMHGAGQWL-ALSALFAGGTVVLLPDDKFDPDRVWRTVEKHRVN 109

Query: 64  HIWVV-----PPLILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQ 118
            + +V      PL+ AL   G   ++DLSSL+ + S  A    E+ +   + +P+  ++ 
Sbjct: 110 TLVIVGDAFARPLLEALEAAG---RYDLSSLRAISSSGAMWSPEVKQGLLELLPNLALVD 166

Query: 119 VGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWL-RG 177
              G +ET G  +   S + +    + G    G + +++  D    +PP      W+ RG
Sbjct: 167 -ALGASETGGGGS---SVSRAGGASATGKFELGPDTVVLDEDGS-EVPPGSGEVGWIARG 221

Query: 178 PNMMRGYYNNE---QATKLTIDKKGWVHTGDLGYFDGDGQLYVVDR 220
             +  GYY +      T   ID   +   GD    + DG + ++ R
Sbjct: 222 GRVPLGYYKDPEKTAKTFREIDGVRYAVPGDFARVEADGTITLLGR 267

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 365

>gnl|CDD|236403 PRK09192, PRK09192, acyl-CoA synthetase; Validated

 Score = 83.1 bits (206), Expect = 2e-18
 Identities = 51/182 (28%), Positives = 78/182 (42%), Gaps = 53/182 (29%)

Query: 84  FDLSSLKLVGSGAAPLGKELMEECAKN-----------VPSATVIQVGYGLTETSGIATM 132
            DLS  ++ G GA  +  +++ + A+            +PS       YGL E    AT+
Sbjct: 296 LDLSCWRVAGIGADMIRPDVLHQFAEAFAPAGFDDKAFMPS-------YGLAE----ATL 344

Query: 133 ENSFAG------------SRNIGSAGALAPGVEAL---------------IVSV--DTQK 163
             SF+              R      A+APG E                  + +  +   
Sbjct: 345 AVSFSPLGSGIVVEEVDRDRLEYQGKAVAPGAETRRVRTFVNCGKALPGHEIEIRNEAGM 404

Query: 164 PLPPNQLGEIWLRGPNMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKE 223
           PLP   +G I +RGP++M GY+ +E++    +   GW+ TGDLGY   DG LY+  R K+
Sbjct: 405 PLPERVVGHICVRGPSLMSGYFRDEESQD-VLAADGWLDTGDLGYLL-DGYLYITGRAKD 462

Query: 224 LI 225
           LI
Sbjct: 463 LI 464

Length = 579

>gnl|CDD|213312 cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and 4-Hydroxybenzoate-Coenzyme A Ligase (4-HBA-CoA ligase)

 Score = 82.8 bits (205), Expect = 3e-18
 Identities = 59/218 (27%), Positives = 95/218 (43%), Gaps = 19/218 (8%)

Query: 22  LFHVFGLAVITCGQLQKGSCIILMAKFDL-EMFLRAIEKHRVTHIWVVPPLILALAKHGL 80
           LF  +GL       L  G+  +LM +    +     IE+++ T  + VP L  A+     
Sbjct: 212 LFFAYGLGNGLYFPLSVGATTVLMPERPTPDAVFATIERYKPTVFFGVPTLYAAMLAAPE 271

Query: 81  VKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVGYGLTETSGIATME------N 134
             + DLSSL+L  S    L  E+              +  +GL    GI + E      +
Sbjct: 272 KPERDLSSLRLCVSAGEALPAEIGYR----------WKELFGLEILDGIGSTEMLHIFLS 321

Query: 135 SFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQATKLT 194
           +  G+   G++G   PG E  +V  D +  +   ++GE+W+RG +   GY+N  + T+ T
Sbjct: 322 NRPGAVKYGTSGKPVPGYEVKLVDEDGE-EVADGEIGELWVRGDSSAAGYWNRREKTRET 380

Query: 195 IDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 232
                W  TGD  Y D DG  +   R  +++K  G  V
Sbjct: 381 F-VGEWTRTGDKYYRDEDGYYWYCGRSDDMLKVSGIWV 417

Benzoate CoA ligase and 4-hydroxybenzoate-coenzyme A ligase catalyze the first activating step for benzoate and 4-hydroxybenzoate catabolic pathways, respectively. Although these two enzymes share very high sequence homology, they have their own substrate preference. The reaction proceeds via a two-step process; the first ATP-dependent step forms the substrate-AMP intermediate, while the second step forms the acyl-CoA ester, releasing the AMP. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Some bacteria can use benzoic acid or benzenoid compounds as the sole source of carbon and energy through degradation. Benzoate CoA ligase and 4-hydroxybenzoate-Coenzyme A ligase are key enzymes of this process. Length = 506

>gnl|CDD|180533 PRK06334, PRK06334, long chain fatty acid--[acyl-carrier-protein] ligase; Validated

 Score = 82.6 bits (204), Expect = 4e-18
 Identities = 65/223 (29%), Positives = 102/223 (45%), Gaps = 18/223 (8%)

Query: 13  DYVFLCVLPLFHVFGLAVITCGQLQKGSCII-----LMAKFDLEMFLRAIEKHRVTHIWV 67
           D V +  LP FH +G    T   L  G  ++     L  K  +EM    I++ +VT +  
Sbjct: 224 DDVMMSFLPPFHAYGFNSCTLFPLLSGVPVVFAYNPLYPKKIVEM----IDEAKVTFLGS 279

Query: 68  VPPL---ILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVGYGLT 124
            P     IL  AK    ++  L SL+ V  G       L +E  K  P   + Q GYG T
Sbjct: 280 TPVFFDYILKTAKK---QESCLPSLRFVVIGGDAFKDSLYQEALKTFPHIQLRQ-GYGTT 335

Query: 125 ETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGY 184
           E S + T+ N+    ++    G    G++ LIVS +T+ P+   + G +  RG ++  GY
Sbjct: 336 ECSPVITI-NTVNSPKHESCVGMPIRGMDVLIVSEETKVPVSSGETGLVLTRGTSLFSGY 394

Query: 185 Y-NNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIK 226
              +     + +  + W  TGDLGY D  G+L++  R+   +K
Sbjct: 395 LGEDFGQGFVELGGETWYVTGDLGYVDRHGELFLKGRLSRFVK 437

Length = 539

>gnl|CDD|172019 PRK13382, PRK13382, acyl-CoA synthetase; Provisional

 Score = 82.1 bits (203), Expect = 5e-18
 Identities = 61/218 (27%), Positives = 101/218 (46%), Gaps = 21/218 (9%)

Query: 15  VFLCVLPLFHVFGLAVITCGQLQKG---SCIILMA-KFDLEMFLRAIEKHRVTHIWVVPP 70
             + V P+FH +G +     QL      +C I+   +FD E  L  I++HR T + VVP 
Sbjct: 239 PTVIVAPMFHAWGFS-----QLVLAASLACTIVTRRRFDPEATLDLIDRHRATGLAVVPV 293

Query: 71  L---ILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVGYGLTETS 127
           +   I+ L       ++   SL+   +  + +  +++           VI   Y  TE  
Sbjct: 294 MFDRIMDLPAEVR-NRYSGRSLRFAAASGSRMRPDVVIAFMDQF--GDVIYNNYNATEAG 350

Query: 128 GIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNN 187
            IAT            +AG  A G E  I+  D ++ +P  ++G I++R      GY + 
Sbjct: 351 MIAT-ATPADLRAAPDTAGRPAEGTEIRILDQDFRE-VPTGEVGTIFVRNDTQFDGYTSG 408

Query: 188 EQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELI 225
             +TK   D  G++ +GD+GY D +G+L+VV R  E+I
Sbjct: 409 --STKDFHD--GFMASGDVGYLDENGRLFVVGRDDEMI 442

Length = 537

>gnl|CDD|178452 PLN02861, PLN02861, long-chain-fatty-acid-CoA ligase

 Score = 80.7 bits (199), Expect = 2e-17
 Identities = 50/146 (34%), Positives = 79/146 (54%), Gaps = 18/146 (12%)

Query: 89  LKLVGSGAAPLGKELMEECAKNVPSATVIQVGYGLTETSG--IATMENSFAGSRNIGSAG 146
           ++L+ SGAAPL + + EE  +    + + Q GYGLTE+ G    ++ N F+    +G+ G
Sbjct: 385 VRLLLSGAAPLPRHV-EEFLRVTSCSVLSQ-GYGLTESCGGCFTSIANVFS---MVGTVG 439

Query: 147 ALAPGVEALIVSV-----DTQKPLPPNQLGEIWLRGPNMMRGYYNNEQATK-LTIDKKGW 200
                +EA + SV     D    +P    GEI LRG  +  GY+  +  T+ + ID  GW
Sbjct: 440 VPMTTIEARLESVPEMGYDALSDVPR---GEICLRGNTLFSGYHKRQDLTEEVLID--GW 494

Query: 201 VHTGDLGYFDGDGQLYVVDRIKELIK 226
            HTGD+G +  +G + ++DR K + K
Sbjct: 495 FHTGDIGEWQPNGAMKIIDRKKNIFK 520

Length = 660

>gnl|CDD|236169 PRK08162, PRK08162, acyl-CoA synthetase; Validated

 Score = 80.0 bits (198), Expect = 2e-17
 Identities = 70/233 (30%), Positives = 99/233 (42%), Gaps = 37/233 (15%)

Query: 15  VFLCVLPLFHVFG------LAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVV 68
           V+L  LP+FH  G      +A             + + K D ++    I +H VTH    
Sbjct: 225 VYLWTLPMFHCNGWCFPWTVAAR-------AGTNVCLRKVDPKLIFDLIREHGVTHYCGA 277

Query: 69  PPLILAL--AKHGLVKKFDLSSLKLVGSGAAPLGK--ELMEECAKNVPSATVIQVGYGLT 124
           P ++ AL  A        D     +V  GAAP       MEE   ++       V YGLT
Sbjct: 278 PIVLSALINAPAEWRAGIDHPVHAMVA-GAAPPAAVIAKMEEIGFDL-----THV-YGLT 330

Query: 125 ETSGIATMENSFAG---------SRNIGSAGALAPGVEALIV-SVDTQKPLPPN--QLGE 172
           ET G AT+               ++     G   P  E + V   DT +P+P +   +GE
Sbjct: 331 ETYGPATVCAWQPEWDALPLDERAQLKARQGVRYPLQEGVTVLDPDTMQPVPADGETIGE 390

Query: 173 IWLRGPNMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELI 225
           I  RG  +M+GY  N +AT+      GW HTGDL     DG + + DR K++I
Sbjct: 391 IMFRGNIVMKGYLKNPKATEEAF-AGGWFHTGDLAVLHPDGYIKIKDRSKDII 442

Length = 545

>gnl|CDD|235719 PRK06155, PRK06155, crotonobetaine/carnitine-CoA ligase; Provisional

 Score = 79.8 bits (197), Expect = 3e-17
 Identities = 67/234 (28%), Positives = 96/234 (41%), Gaps = 31/234 (13%)

Query: 13  DYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVV---P 69
           D V    LPLFH   L       L  G+  +L  +F    F  A+ +H  T  +++    
Sbjct: 221 DDVLYTTLPLFHTNALNAFFQALLA-GATYVLEPRFSASGFWPAVRRHGATVTYLLGAMV 279

Query: 70  PLILALAK------HGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVGYGL 123
            ++L+         H +        + L     A L     E     V        GYG 
Sbjct: 280 SILLSQPARESDRAHRV-------RVALGPGVPAALHAAFRERFG--VDLLD----GYGS 326

Query: 124 TETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPN---M 180
           TET+ +  +     GS+  GS G LAPG EA +V    Q  LP  + GE+ LR       
Sbjct: 327 TETNFVIAVT---HGSQRPGSMGRLAPGFEARVVDEHDQ-ELPDGEPGELLLRADEPFAF 382

Query: 181 MRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTS 234
             GY+   + T +   +  W HTGD    D DG    VDRIK+ I+ +G  ++S
Sbjct: 383 ATGYFGMPEKT-VEAWRNLWFHTGDRVVRDADGWFRFVDRIKDAIRRRGENISS 435

Length = 542

>gnl|CDD|171961 PRK13295, PRK13295, cyclohexanecarboxylate-CoA ligase; Reviewed

 Score = 79.7 bits (197), Expect = 3e-17
 Identities = 57/213 (26%), Positives = 85/213 (39%), Gaps = 5/213 (2%)

Query: 13  DYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLI 72
           D V L   P+ H  G        +  G+  +L   +D       I    VT      P +
Sbjct: 238 DDVILMASPMAHQTGFMYGLMMPVMLGATAVLQDIWDPARAAELIRTEGVTFTMASTPFL 297

Query: 73  LALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVGYGLTETSGIATM 132
             L +        +SSL+      AP+   L+E  A+    A ++   +G+TE   +   
Sbjct: 298 TDLTRAVKESGRPVSSLRTFLCAGAPIPGALVER-ARAALGAKIVS-AWGMTENGAVTLT 355

Query: 133 ENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQATK 192
           +      R   + G   PGVE  +V  D   PLP  Q+G + +RG +   GY    Q   
Sbjct: 356 KLDDPDERASTTDGCPLPGVEVRVVDADGA-PLPAGQIGRLQVRGCSNFGGYLKRPQLNG 414

Query: 193 LTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELI 225
              D  GW  TGDL   D DG + +  R K++I
Sbjct: 415 --TDADGWFDTGDLARIDADGYIRISGRSKDVI 445

Length = 547

>gnl|CDD|213314 cd05967, PrpE, Propionyl-CoA synthetase (PrpE)

 Score = 76.2 bits (188), Expect = 5e-16
 Identities = 54/190 (28%), Positives = 84/190 (44%), Gaps = 18/190 (9%)

Query: 53  FLRAIEKHRVTHIWVVPPLILALAK---HG-LVKKFDLSSLKLVGSGAAPLGKELME--E 106
           + R IE++ V  ++  P  I A+ K    G  +KK+DLSSL+ +      L    +E  E
Sbjct: 307 YWRVIEEYGVNALFTAPTAIRAIRKQDPDGEYIKKYDLSSLRALFLAGERLDSPTLEWIE 366

Query: 107 CAKNVPSATVIQVGYGLTETSG--IATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKP 164
               VP   VI   +  TET     A            GS G   PG +  ++  +T + 
Sbjct: 367 KTLGVP---VID-HWWQTETGWPITANCVGLELLPIKPGSPGKPVPGYDVQVLD-ETGEE 421

Query: 165 LPPNQLGEIWLRGP---NMMRGYYNNEQATKLTI--DKKGWVHTGDLGYFDGDGQLYVVD 219
           L P +LG I ++ P     +   + +++  K        G+  TGD GY D DG L+V+ 
Sbjct: 422 LGPGELGNIVIKLPLPPGCLLTLWGDDERFKKLYLNKFPGYYDTGDSGYKDEDGYLFVMG 481

Query: 220 RIKELIKYKG 229
           R  ++I   G
Sbjct: 482 RTDDVINVAG 491

PrpE catalyzes the first step of the 2-methylcitric acid cycle for propionate catabolism. It activates propionate to propionyl-CoA in a two-step reaction, which proceeds through a propionyl-AMP intermediate and requires ATP and Mg2+. In Salmonella enterica, the PrpE protein is required for growth of S. enterica on propionate and can substitute for the acetyl-CoA synthetase (Acs) enzyme during growth on acetate. PrpE can also activate acetate, 3HP, and butyrate to their corresponding CoA-thioesters, although with less efficiency. Length = 607

>gnl|CDD|236100 PRK07798, PRK07798, acyl-CoA synthetase; Validated

 Score = 76.1 bits (188), Expect = 6e-16
 Identities = 52/214 (24%), Positives = 83/214 (38%), Gaps = 23/214 (10%)

Query: 15  VFLCVLPLFHVFGL-AVITCGQLQKGSCIIL--MAKFDLEMFLRAIEKHRVTHIWVV--- 68
                 PL H  G  A      L  G  ++L    +FD +   R IE+ +V  I +V   
Sbjct: 221 RRFPAPPLMHGAGQWAAFAA--LFSGQTVVLLPDVRFDADEVWRTIEREKVNVITIVGDA 278

Query: 69  --PPLILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVGYGLTET 126
              PL+ AL   G    +DLSSL  + SG A     + E   + +P+  +     G +ET
Sbjct: 279 MARPLLDALEARG---PYDLSSLFAIASGGALFSPSVKEALLELLPNVVLTD-SIGSSET 334

Query: 127 SGIATMENSFAGSRNIGSAGA-LAPGVEALIVSVDTQKPLPPNQLGEIWL-RGPNMMRGY 184
               +          + + G     G   +++  D   P+ P      W+ R  ++  GY
Sbjct: 335 GFGGS---GTVAKGAVHTGGPRFTIGPRTVVLDEDGN-PVEPGSGEIGWIARRGHIPLGY 390

Query: 185 YNNEQATKLT---IDKKGWVHTGDLGYFDGDGQL 215
           Y + + T  T   ID   +   GD    + DG +
Sbjct: 391 YKDPEKTAETFPTIDGVRYAIPGDRARVEADGTI 424

Length = 533

>gnl|CDD|223951 COG1020, EntF, Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

 Score = 76.1 bits (187), Expect = 6e-16
 Identities = 44/191 (23%), Positives = 69/191 (36%), Gaps = 13/191 (6%)

Query: 49  DLEMFLRAIEKHRVTHIWVVPPLILALAKHGLV--KKFDLSSLKLVGSGAAPLGKELMEE 106
           D    L  +E   +T + +VP L+  L    L          L+ + SG   L   L++ 
Sbjct: 445 DPAALLELLEAQGITVLLLVPLLLRLLLLAALAPDLISPCERLRQLLSGGEALPLALVQR 504

Query: 107 CAKNVPSATVIQVGYGLTETSGIATM---ENSFAGSRNIGSAGALAPGVEALIVSVDTQK 163
             +    A  +   YG TE +  A              IG         +  I+     +
Sbjct: 505 LLQLAALARRLLNLYGPTEATLDAPSFPISAELESRVPIGRP---VANTQLYILD-QGLR 560

Query: 164 PLPPNQLGEIWLRGPNMMRGYYNNEQAT--KLTIDKKGWVHTGDLGYFDGDGQLYVVDRI 221
           PLP    GE+++ G  +  GY N    T  +          TGDL     DG L  + R 
Sbjct: 561 PLPLGVPGELYIAGLGLALGYLNRPDLTAERFIAL--RLYRTGDLARPLADGALEYLGRK 618

Query: 222 KELIKYKGFQV 232
              +K +GF++
Sbjct: 619 DSQVKIRGFRI 629

Length = 642

>gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated

 Score = 76.0 bits (187), Expect = 9e-16
 Identities = 77/255 (30%), Positives = 120/255 (47%), Gaps = 43/255 (16%)

Query: 13  DYVFLCVLPLFHVFGLAVITCGQLQ---KGSCIILMA-KFDLEMFLR---AIEKHRVTHI 65
           D V +  LPL+H  GL     G LQ    G   +LM+  + LE  LR   AI ++  T I
Sbjct: 209 DDVIVSWLPLYHDMGL---IGGLLQPIFSGVPCVLMSPAYFLERPLRWLEAISEYGGT-I 264

Query: 66  WVVPPLILALAKH----GLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPS----ATVI 117
              P     L         +++ DLS  ++  SG+ P+ ++ +E  A+   +        
Sbjct: 265 SGGPDFAYRLCSERVSESALERLDLSRWRVAYSGSEPIRQDSLERFAEKFAACGFDPDSF 324

Query: 118 QVGYGLTETS----------GIATME-NSFAGSRN---------IGSAGALAPGVEALIV 157
              YGL E +          GI  +E ++ A +RN         + S G   PG   LIV
Sbjct: 325 FASYGLAEATLFVSGGRRGQGIPALELDAEALARNRAEPGTGSVLMSCGRSQPGHAVLIV 384

Query: 158 SVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQATKLTI---DKKGWVHTGDLGYFDGDGQ 214
              + + L  N++GEIW  GP++  GY+ N +A+  T    D + W+ TGDLG F  DG+
Sbjct: 385 DPQSLEVLGDNRVGEIWASGPSIAHGYWRNPEASAKTFVEHDGRTWLRTGDLG-FLRDGE 443

Query: 215 LYVVDRIKELIKYKG 229
           L+V  R+K+++  +G
Sbjct: 444 LFVTGRLKDMLIVRG 458

Length = 4334

>gnl|CDD|181109 PRK07769, PRK07769, long-chain-fatty-acid--CoA ligase; Validated

 Score = 75.2 bits (185), Expect = 1e-15
 Identities = 37/100 (37%), Positives = 49/100 (49%), Gaps = 20/100 (20%)

Query: 144 SAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQATKLTI-------- 195
           SAG +     A+IV  +T   LP  Q+GEIWL G N+  GY+   + T  T         
Sbjct: 392 SAGKVGVSEWAVIVDPETASELPDGQIGEIWLHGNNIGTGYWGKPEETAATFQNILKSRL 451

Query: 196 ---------DKKGWVHTGDLG-YFDGDGQLYVVDRIKELI 225
                    D   WV TGD G YFDG+  LY+  R+K+L+
Sbjct: 452 SESHAEGAPDDALWVRTGDYGVYFDGE--LYITGRVKDLV 489

Length = 631

>gnl|CDD|240325 PTZ00237, PTZ00237, acetyl-CoA synthetase; Provisional

 Score = 74.8 bits (184), Expect = 1e-15
 Identities = 57/195 (29%), Positives = 89/195 (45%), Gaps = 19/195 (9%)

Query: 53  FLRAIEKHRVTHIWVVPPLILALAKHG-----LVKKFDLSSLKLVGSGAAPLGK---ELM 104
               IEKH+VTH   +P  I  L K       +  K+DLS+LK +  G   + +   E +
Sbjct: 341 LWNTIEKHKVTHTLTLPKTIRYLIKTDPEATIIRSKYDLSNLKEIWCGGEVIEESIPEYI 400

Query: 105 EECAKNVPSATVIQVGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKP 164
           E   K   S      GYG TE  GI  +      +    + G  +  ++  I+S D  K 
Sbjct: 401 ENKLKIKSSR-----GYGQTE-IGITYLYCYGHINIPYNATGVPSIFIKPSILSEDG-KE 453

Query: 165 LPPNQLGEIWLR---GPNMMRGYYNNEQATKLTIDK-KGWVHTGDLGYFDGDGQLYVVDR 220
           L  N++GE+  +    P+    +Y N++  K    K  G+ ++GDLG+ D +G   +V R
Sbjct: 454 LNVNEIGEVAFKLPMPPSFATTFYKNDEKFKQLFSKFPGYYNSGDLGFKDENGYYTIVSR 513

Query: 221 IKELIKYKGFQVTSN 235
             + IK  G +V  N
Sbjct: 514 SDDQIKISGNKVQLN 528

Length = 647

>gnl|CDD|213306 cd05940, FATP_FACS, Fatty acid transport proteins (FATP) play dual roles as fatty acid transporters and its activation enzymes

 Score = 74.6 bits (184), Expect = 2e-15
 Identities = 64/242 (26%), Positives = 104/242 (42%), Gaps = 32/242 (13%)

Query: 15  VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPL--- 71
           V    LPL+H   L V     L  G+ + L  KF    F   + ++  T    V  L   
Sbjct: 124 VLYLCLPLYHSNALTVGWSSALAAGASLALRRKFSASQFWPDVRRYGATAFQYVGELCRY 183

Query: 72  ILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVGYGLTETSGIAT 131
           +L   +    +   L   K++G+G  P   ++ +E  +      +++  YG TE  G   
Sbjct: 184 LLNQPEKPDDRDHPLR--KIIGNGLRP---DIWDEFKERFGVPRIVE-FYGSTE--GNVG 235

Query: 132 MENSFAGSRNIGSAGALAPGVEALI-VSVDTQKPL----------PPNQLGEIWLRG--P 178
             N F      G+ G L P   A++   V+T++P+          PP ++G +       
Sbjct: 236 FINLF---NKPGAVGRLPPAAIAVVKYDVETEEPIRDANGFCIKVPPGEVGLLLGEITDR 292

Query: 179 NMMRGYYNNEQAT-KLTID--KKG--WVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVT 233
           N   GY ++E    K+  D  KKG  + +TGDL   DG G  Y VDR+ +  ++KG  V+
Sbjct: 293 NPFDGYTDDEATEKKILRDVFKKGDAYFNTGDLVRRDGFGYFYFVDRLGDTFRWKGENVS 352

Query: 234 SN 235
           + 
Sbjct: 353 TT 354

Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. At least five copies of FATPs are identified in mammalian cells. This family also includes prokaryotic FATPs. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 444

>gnl|CDD|237374 PRK13388, PRK13388, acyl-CoA synthetase; Provisional

 Score = 74.3 bits (183), Expect = 2e-15
 Identities = 64/240 (26%), Positives = 93/240 (38%), Gaps = 54/240 (22%)

Query: 8   TAGELDYVFLCVLPLFH----VFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVT 63
           T  ++ Y     +PLFH    + G A      +  G+ + L AKF    FL  + ++  T
Sbjct: 189 TRDDVCY---VSMPLFHSNAVMAGWAPA----VASGAAVALPAKFSASGFLDDVRRYGAT 241

Query: 64  HI-WVVPPL--ILALAKHG------LVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSA 114
           +  +V  PL  ILA  +        L   F        G+ A+P     + E ++     
Sbjct: 242 YFNYVGKPLAYILATPERPDDADNPLRVAF--------GNEASP---RDIAEFSRRF-GC 289

Query: 115 TVIQVGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQL---- 170
            V   GYG +E + I   E         GS G  APGV   I + +T       +     
Sbjct: 290 QVED-GYGSSEGAVIVVREPGTPP----GSIGRGAPGVA--IYNPETLTECAVARFDAHG 342

Query: 171 ---------GEIW-LRGPNMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDR 220
                    GE+    G     GYYNN +AT   + + G   +GDL Y D DG +Y   R
Sbjct: 343 ALLNADEAIGELVNTAGAGFFEGYYNNPEATAERM-RHGMYWSGDLAYRDADGWIYFAGR 401

Length = 540

>gnl|CDD|213290 cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL)

 Score = 73.7 bits (181), Expect = 3e-15
 Identities = 58/217 (26%), Positives = 95/217 (43%), Gaps = 17/217 (7%)

Query: 15  VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILA 74
           V L ++PL+HV G   +    L      +++ +FD    L+ IE+ RVT ++  P  + A
Sbjct: 197 VVLGLMPLYHVIGFFAVLVAALALDGTYVVVEEFDPADALKLIEQERVTSLFATPTHLDA 256

Query: 75  LAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATV-IQVGYGLTETSGIATME 133
           LA         L SL+ V    A +   ++E   +++P   V I   YG TE      M 
Sbjct: 257 LAAAAEGAPLKLDSLEHVTFAGATMPDAVLERVNQHLPGEKVNI---YGTTEAMNSLYMR 313

Query: 134 NSFAGSRNIGSAGALAPGV--EALIVSV--DTQKPLPPNQLGEIWL-RGPNMMRGYYNNE 188
           +   G+        + PG   E  IV +     + LP  + GE+ +        GY N  
Sbjct: 314 DPRTGTE-------MRPGFFSEVRIVRIGGSPDEALPNGEEGELVVAAADATFTGYLNQP 366

Query: 189 QATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELI 225
           QAT   + + GW  T D+   D  G + ++ R+ ++I
Sbjct: 367 QATAEKL-QDGWYRTSDVAVVDPSGTVRILGRVDDMI 402

CBAL catalyzes the conversion of 4-chlorobenzoate (4-CB) to 4-chlorobenzoyl-coenzyme A (4-CB-CoA) by the two-step adenylation and thioester-forming reactions. 4-Chlorobenzoate (4-CBA) is an environmental pollutant derived from microbial breakdown of aromatic pollutants, such as polychlorinated biphenyls (PCBs), DDT, and certain herbicides. The 4-CBA degrading pathway converts 4-CBA to the metabolite 4-hydroxybezoate (4-HBA), allowing some soil-dwelling microbes to utilize 4-CBA as an alternate carbon source. This pathway consists of three chemical steps catalyzed by 4-CBA-CoA ligase, 4-CBA-CoA dehalogenase, and 4HBA-CoA thioesterase in sequential reactions. Length = 495

>gnl|CDD|236120 PRK07867, PRK07867, acyl-CoA synthetase; Validated

 Score = 73.6 bits (181), Expect = 4e-15
 Identities = 67/232 (28%), Positives = 92/232 (39%), Gaps = 46/232 (19%)

Query: 13  DYVFLCVLPLFH----VFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHI-WV 67
           D V    +PLFH    + G AV        G+ I L  KF    FL  + ++  T+  +V
Sbjct: 193 DDVCYVSMPLFHSNAVMAGWAVALAA----GASIALRRKFSASGFLPDVRRYGATYANYV 248

Query: 68  VPPLILALAKHGLVKKFDLSSLKLV-GSGAAPLGKELMEE---CAKNVPSATVIQVGYGL 123
             PL   LA        D + L++V G+  AP           C        V+  G+G 
Sbjct: 249 GKPLSYVLATPERPDDAD-NPLRIVYGNEGAPGDIARFARRFGC-------VVVD-GFGS 299

Query: 124 TETSGIATMENSFAGSRNI--GSAGALAPGVEALIVSVDTQKPLPPNQL----------- 170
           TE  G+A        + +   G+ G L PGV   IV  DT    PP +            
Sbjct: 300 TEG-GVA-----ITRTPDTPPGALGPLPPGVA--IVDPDTGTECPPAEDADGRLLNADEA 351

Query: 171 -GEIW-LRGPNMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDR 220
            GE+    GP    GYYN+ +A    + + G   +GDL Y D DG  Y   R
Sbjct: 352 IGELVNTAGPGGFEGYYNDPEADAERM-RGGVYWSGDLAYRDADGYAYFAGR 402

Length = 529

>gnl|CDD|213311 cd05958, ABCL, 2-aminobenzoate-CoA ligase (ABCL)

 Score = 73.3 bits (180), Expect = 4e-15
 Identities = 63/222 (28%), Positives = 105/222 (47%), Gaps = 14/222 (6%)

Query: 13  DYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLI 72
           D VF+   PL   FGL  +    L+ G+  +L+ +    + L+AI++HR T ++  P   
Sbjct: 189 DDVFIGSPPLAFTFGLGGLVLFPLRFGASAVLLEQATPPLLLKAIQEHRATILFTAPTAY 248

Query: 73  LALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQV--GYGLTETSGIA 130
            A+     VK FD+SSL+   S    L  ++ ++  +     T +++  G G TE   I 
Sbjct: 249 RAML--IKVKAFDISSLRKCVSAGETLPAKVWQDWYE----RTGLKIIDGIGATEMLHIF 302

Query: 131 TMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQA 190
              N    +   G+ G   PG EA IV  D    +P  + G + +RGP   R  Y +++ 
Sbjct: 303 ISAN--EENAKPGATGKPVPGYEARIVD-DQGNEVPRGEAGRLAVRGPTGCR--YLDDER 357

Query: 191 TKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 232
            +  + + GW  TGD+   D DG  + V R  ++I   G+ +
Sbjct: 358 QQEYV-RDGWNVTGDIFRQDEDGYFHYVARSDDMIVSAGYNI 398

ABCL catalyzes the initial step in the 2-aminobenzoate aerobic degradation pathway by activating 2-aminobenzoate to 2-aminobenzoyl-CoA. The reaction is carried out via a two-step process; the first step is ATP-dependent and forms a 2-aminobenzoyl-AMP intermediate, and the second step forms the 2-aminobenzoyl-CoA ester and releases the AMP. 2-Aminobenzoyl-CoA is further converted to 2-amino-5-oxo-cyclohex-1-ene-1-carbonyl-CoA catalyzed by 2-aminobenzoyl-CoA monooxygenase/reductase. ABCL has been purified from cells aerobically grown with 2-aminobenzoate as sole carbon, energy, and nitrogen source, and has been characterized as a monomer. Length = 487

>gnl|CDD|233770 TIGR02188, Ac_CoA_lig_AcsA, acetate--CoA ligase

 Score = 72.7 bits (179), Expect = 9e-15
 Identities = 59/190 (31%), Positives = 81/190 (42%), Gaps = 19/190 (10%)

Query: 53  FLRAIEKHRVTHIWVVPPLILALAKHG--LVKKFDLSSLKLVGSGAAPLGKELMEECAKN 110
           F   IEKH+VT  +  P  I AL + G   VKK DLSSL+L+GS   P+  E      K 
Sbjct: 322 FWEIIEKHKVTIFYTAPTAIRALMRLGDEWVKKHDLSSLRLLGSVGEPINPEAWMWYYKV 381

Query: 111 V-PSATVIQVGYGLTETSGIATMENSFAGSRNI--GSAGALAPGVEALIVSVDTQKPLPP 167
           V      I   +  TET GI  M     G+     GSA     G+E  +V  +   P+  
Sbjct: 382 VGKERCPIVDTWWQTETGGI--MITPLPGATPTKPGSATLPFFGIEPAVVD-EEGNPVEG 438

Query: 168 NQLGEI------WLRGPNMMRGYYNNEQATKLTIDK--KGWVHTGDLGYFDGDGQLYVVD 219
              G        W   P M+R  Y + +    T      G+  TGD    D DG +++  
Sbjct: 439 PGEGGYLVIKQPW---PGMLRTIYGDHERFVDTYFSPFPGYYFTGDGARRDKDGYIWITG 495

Query: 220 RIKELIKYKG 229
           R+ ++I   G
Sbjct: 496 RVDDVINVSG 505

This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA synthetase and acetyl-activating enzyme. It catalyzes the reaction ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA and belongs to the family of AMP-binding enzymes described by pfam00501. Length = 625

>gnl|CDD|211788 TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-forming), exosortase A-associated

 Score = 72.1 bits (177), Expect = 1e-14
 Identities = 61/229 (26%), Positives = 100/229 (43%), Gaps = 18/229 (7%)

Query: 17  LCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALA 76
           L VLPL   +G   +T      G+ ++L         L+A+EKH +T +  VPPL   LA
Sbjct: 208 LAVLPLSFDYGFNQLTTAFYV-GATVVLHDYLLPRDVLKALEKHGITGLAAVPPLWAQLA 266

Query: 77  KHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVGYGLTETSGIATMENSF 136
           +     +    SL+ + +    + +  +      +P+A +  + YGLTE      +    
Sbjct: 267 QLDW-PESAAPSLRYLTNSGGAMPRATLSRLRSFLPNARLFLM-YGLTEAFRSTYLPPEE 324

Query: 137 AGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQATK---- 192
              R   S G   P  E L++  D  +  P  + GE+  RG  +  GY+N+ + T     
Sbjct: 325 VDRRP-DSIGKAIPNAEVLVLREDGSECAP-GEEGELVHRGALVAMGYWNDPEKTAERFR 382

Query: 193 --------LTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVT 233
                   L + +   V +GD    D +G LY V R  E+IK  G++V+
Sbjct: 383 PLPPFPGELHLPELA-VWSGDTVRRDEEGFLYFVGRRDEMIKTSGYRVS 430

This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system , specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present. Length = 517

>gnl|CDD|166255 PLN02614, PLN02614, long-chain acyl-CoA synthetase

 Score = 71.6 bits (175), Expect = 2e-14
 Identities = 52/161 (32%), Positives = 81/161 (50%), Gaps = 17/161 (10%)

Query: 71  LILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVGYGLTETSG-- 128
           L+    K GL       +++++ SGAAPL   + E   + V    V+Q GYGLTE+    
Sbjct: 375 LVFNKVKQGLG-----GNVRIILSGAAPLASHV-ESFLRVVACCHVLQ-GYGLTESCAGT 427

Query: 129 IATMENSFAGSRNIGSAGALAPGVEALIVSVDTQK--PLPPNQLGEIWLRGPNMMRGYYN 186
             ++ +       +G+ G   P V+  + SV   +   L     GEI +RG  +  GYY 
Sbjct: 428 FVSLPDELD---MLGTVGPPVPNVDIRLESVPEMEYDALASTPRGEICIRGKTLFSGYYK 484

Query: 187 NEQATK-LTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIK 226
            E  TK + ID  GW+HTGD+G +  +G + ++DR K + K
Sbjct: 485 REDLTKEVLID--GWLHTGDVGEWQPNGSMKIIDRKKNIFK 523

Length = 666

>gnl|CDD|215576 PLN03102, PLN03102, acyl-activating enzyme; Provisional

 Score = 70.8 bits (173), Expect = 3e-14
 Identities = 65/239 (27%), Positives = 106/239 (44%), Gaps = 31/239 (12%)

Query: 15  VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILA 74
           V+L  LP+FH  G    T G   +G   + M         + IE H VTH+  VP +   
Sbjct: 229 VYLWTLPMFHCNGWT-FTWGTAARGGTSVCMRHVTAPEIYKNIEMHNVTHMCCVPTVFNI 287

Query: 75  LAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVGYGLTETSGIA---- 130
           L K   +     S    V +G +P    L+++  +       +   YGLTE +G      
Sbjct: 288 LLKGNSLDLSPRSGPVHVLTGGSPPPAALVKKVQR---LGFQVMHAYGLTEATGPVLFCE 344

Query: 131 ------------TME-NSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPN--QLGEIWL 175
                        ME  +  G   +G A       +  + + +TQ+ +P +   +GEI +
Sbjct: 345 WQDEWNRLPENQQMELKARQGVSILGLA-------DVDVKNKETQESVPRDGKTMGEIVI 397

Query: 176 RGPNMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTS 234
           +G ++M+GY  N +AT     K GW++TGD+G    DG + + DR K++I   G  ++S
Sbjct: 398 KGSSIMKGYLKNPKATSEAF-KHGWLNTGDVGVIHPDGHVEIKDRSKDIIISGGENISS 455

Length = 579

>gnl|CDD|171527 PRK12476, PRK12476, putative fatty-acid--CoA ligase; Provisional

 Score = 70.2 bits (172), Expect = 6e-14
 Identities = 38/104 (36%), Positives = 51/104 (49%), Gaps = 19/104 (18%)

Query: 144 SAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQATKLTI-------- 195
           S G +A    A+IV  DT   LP  ++GEIWL G N+ RGY+   + T+ T         
Sbjct: 403 SCGQVARSQWAVIVDPDTGAELPDGEVGEIWLHGDNIGRGYWGRPEETERTFGAKLQSRL 462

Query: 196 ----------DKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKG 229
                     D   W+ TGDLG +  DG+LY+  RI +LI   G
Sbjct: 463 AEGSHADGAADDGTWLRTGDLGVYL-DGELYITGRIADLIVIDG 505

Length = 612

>gnl|CDD|236803 PRK10946, entE, enterobactin synthase subunit E; Provisional

 Score = 68.1 bits (167), Expect = 2e-13
 Identities = 64/221 (28%), Positives = 100/221 (45%), Gaps = 22/221 (9%)

Query: 16  FLCVLPLFHVFGLAVI-TCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPP-LIL 73
           +LC LP  H + ++     G    G  ++L       +    IEKH+V    +VPP + L
Sbjct: 226 YLCALPAAHNYPMSSPGALGVFLAGGTVVLAPDPSATLCFPLIEKHQVNVTALVPPAVSL 285

Query: 74  ALAKHGLVK-KFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVGYGLTETSGIAT- 131
            L        +  L+SLKL+  G A L + L    A+ +P+    ++G  L +  G+A  
Sbjct: 286 WLQAIAEGGSRAQLASLKLLQVGGARLSETL----ARRIPA----ELGCQLQQVFGMAEG 337

Query: 132 ------MENSFAGSRNIGSAG-ALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGY 184
                 +++S    R   + G  ++P  E  +   D   PLP  ++G +  RGP   RGY
Sbjct: 338 LVNYTRLDDS--DERIFTTQGRPMSPDDEVWVADADGN-PLPQGEVGRLMTRGPYTFRGY 394

Query: 185 YNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELI 225
           Y + Q      D  G+  +GDL   D DG + VV R K+ I
Sbjct: 395 YKSPQHNASAFDANGFYCSGDLVSIDPDGYITVVGREKDQI 435

Length = 536

>gnl|CDD|213313 cd05966, ACS, Acetyl-CoA synthetase (also known as acetate-CoA ligase and acetyl-activating enzyme)

 Score = 68.3 bits (168), Expect = 3e-13
 Identities = 53/182 (29%), Positives = 81/182 (44%), Gaps = 12/182 (6%)

Query: 57  IEKHRVTHIWVVPPLILALAKHG--LVKKFDLSSLKLVGSGAAPLGKELMEECAKNV-PS 113
           +EK++VT  +  P  I  L + G    KK DLSSL+L+GS   P+  E      + +   
Sbjct: 315 VEKYKVTIFYTAPTAIRMLMRFGDEWPKKHDLSSLRLLGSVGEPINPEAWMWYYEVIGKE 374

Query: 114 ATVIQVGYGLTETSGIATMENSFAGSRNI--GSAGALAPGVEALIVSVDTQKPLPPNQLG 171
              I   +  TET G   M     G+  +  GSA    PGVE  IV  +    +     G
Sbjct: 375 RCPIVDTWWQTETGGH--MITPLPGATPLKPGSATRPFPGVEPAIVDEEG-NEVEGGVEG 431

Query: 172 EIWLRG--PNMMRGYYNNEQATKLTIDKK--GWVHTGDLGYFDGDGQLYVVDRIKELIKY 227
            + ++   P M+R  Y + +    T   K  G+  TGD    D DG  +++ R+ ++I  
Sbjct: 432 YLVIKRPWPGMLRTIYGDHERYVKTYFSKFPGYYFTGDGARRDEDGYYWILGRVDDVINV 491

Query: 228 KG 229
            G
Sbjct: 492 SG 493

Acetyl-CoA synthetase (ACS) catalyzes the formation of acetyl-CoA from acetate, CoA, and ATP. Synthesis of acetyl-CoA is carried out in a two-step reaction. In the first step, the enzyme catalyzes the synthesis of acetyl-AMP intermediate from acetate and ATP. In the second step, acetyl-AMP reacts with CoA to produce acetyl-CoA. This enzyme is widely present in all living organisms. The activity of this enzyme is crucial for maintaining the required levels of acetyl-CoA, a key intermediate in many important biosynthetic and catabolic processes. Acetyl-CoA is used in the biosynthesis of glucose, fatty acids, and cholesterol. It can also be used in the production of energy in the citric acid cycle. Eukaryotes typically have two isoforms of acetyl-CoA synthetase, a cytosolic form involved in biosynthetic processes and a mitochondrial form primarily involved in energy generation. Length = 602

>gnl|CDD|215217 PLN02387, PLN02387, long-chain-fatty-acid-CoA ligase family protein

 Score = 67.8 bits (166), Expect = 4e-13
 Identities = 49/143 (34%), Positives = 73/143 (51%), Gaps = 17/143 (11%)

Query: 94  SGAAPLGKELMEECAKNVPSATVIQVGYGLTETSGIATMENSFAGSRNIGSAGALAPGVE 153
           SG APL  +       N+     I  GYGLTET   AT   S     ++G  G   P   
Sbjct: 427 SGGAPLSGDTQRFI--NICLGAPIGQGYGLTETCAGATF--SEWDDTSVGRVGPPLPCCY 482

Query: 154 ALIVSVD------TQKPLPPNQLGEIWLRGPNMMRGYYNNEQATK--LTIDKKG--WVHT 203
             +VS +      + KP+P    GEI + GP++  GY+ N++ T     +D++G  W +T
Sbjct: 483 VKLVSWEEGGYLISDKPMPR---GEIVIGGPSVTLGYFKNQEKTDEVYKVDERGMRWFYT 539

Query: 204 GDLGYFDGDGQLYVVDRIKELIK 226
           GD+G F  DG L ++DR K+++K
Sbjct: 540 GDIGQFHPDGCLEIIDRKKDIVK 562

Length = 696

>gnl|CDD|213294 cd05928, MACS_euk, Eukaryotic Medium-chain acyl-CoA synthetase (MACS or ACSM)

 Score = 67.5 bits (165), Expect = 5e-13
 Identities = 55/202 (27%), Positives = 93/202 (46%), Gaps = 16/202 (7%)

Query: 39  GSCII--LMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSSLKLVGSGA 96
           G+C+    + +FD ++ L+ + K+ +T     P +   L +  L   +   SL+   +G 
Sbjct: 242 GACVFVHHLPRFDPKVILQTLSKYPITTFCSAPTVYRMLVQQDL-TSYKFKSLRHCVTGG 300

Query: 97  APLGKELMEECAKNVPSATVIQVGYGLTETSGIATMENSFAGSR-NIGSAGALAPGVEAL 155
            PL  E++E+      +   +  GYG TET  I     +F G +   GS G  +P  +  
Sbjct: 301 EPLNPEVLEQW--KAQTGLDLYEGYGQTETGLICA---NFKGMKIKPGSMGKASPPYDVQ 355

Query: 156 IVSVDTQKPLPPNQLGEIWLR-GPN----MMRGYYNNEQATKLTIDKKGWVHTGDLGYFD 210
           I+  D    LPP   G+I +R  P     +   Y +N + T  TI    ++ TGD G  D
Sbjct: 356 IID-DNGNVLPPGTEGDIGIRVKPTRPFCLFSCYVDNPEKTAATIRGDFYI-TGDRGIMD 413

Query: 211 GDGQLYVVDRIKELIKYKGFQV 232
            DG  + V R  ++I   G+++
Sbjct: 414 EDGYFWFVGRADDVINSSGYRI 435

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The acyl-CoA is a key intermediate in many important biosynthetic and catabolic processes. MACS enzymes are localized to mitochondria. Two murine MACS family proteins are found in liver and kidney. In rodents, a MACS member is detected particularly in the olfactory epithelium and is called O-MACS. O-MACS demonstrates substrate preference for the fatty acid lengths of C6-C12. Length = 530

>gnl|CDD|178097 PLN02479, PLN02479, acetate-CoA ligase

 Score = 67.6 bits (165), Expect = 5e-13
 Identities = 71/247 (28%), Positives = 109/247 (44%), Gaps = 46/247 (18%)

Query: 15  VFLCVLPLFH------VFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVV 68
           V+L  LP+FH       + LA + CG        I + +   +    AI  + VTH +  
Sbjct: 238 VYLWTLPMFHCNGWCFTWTLAAL-CGT------NICLRQVTAKAIYSAIANYGVTH-FCA 289

Query: 69  PPLILALAKHGLVKKFDLSSLKLVG---SGAAPLGKEL--MEECAKNVPSATVIQVGYGL 123
            P++L    +    +  L   ++V    +GAAP    L  M E    V         YGL
Sbjct: 290 APVVLNTIVNAPKSETILPLPRVVHVMTAGAAPPPSVLFAMSEKGFRVTHT------YGL 343

Query: 124 TETSGIATM-------------ENSFAGSRNIGSAGALAPGVEAL-IVSVDTQKPLPPN- 168
           +ET G +T+             E +   +R     G    G+E L +V   T KP+P + 
Sbjct: 344 SETYGPSTVCAWKPEWDSLPPEEQARLNARQ----GVRYIGLEGLDVVDTKTMKPVPADG 399

Query: 169 -QLGEIWLRGPNMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKY 227
             +GEI +RG  +M+GY  N +A +      GW H+GDLG    DG + + DR K++I  
Sbjct: 400 KTMGEIVMRGNMVMKGYLKNPKANEEAF-ANGWFHSGDLGVKHPDGYIEIKDRSKDIIIS 458

Query: 228 KGFQVTS 234
            G  ++S
Sbjct: 459 GGENISS 465

Length = 567

>gnl|CDD|235624 PRK05850, PRK05850, acyl-CoA synthetase; Validated

 Score = 67.3 bits (165), Expect = 6e-13
 Identities = 29/81 (35%), Positives = 43/81 (53%), Gaps = 12/81 (14%)

Query: 156 IVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQATKLTIDKK------G-----WVHTG 204
           IV  DT    P   +GEIW+ G N+  GY+   + T+ T          G     W+ TG
Sbjct: 383 IVDPDTCIECPAGTVGEIWVHGDNVAAGYWQKPEETERTFGATLVDPSPGTPEGPWLRTG 442

Query: 205 DLGYFDGDGQLYVVDRIKELI 225
           DLG+   +G+L++V RIK+L+
Sbjct: 443 DLGFIS-EGELFIVGRIKDLL 462

Length = 578

>gnl|CDD|213320 cd05973, MACS_like_2, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS)

 Score = 67.1 bits (164), Expect = 6e-13
 Identities = 51/213 (23%), Positives = 81/213 (38%), Gaps = 10/213 (4%)

Query: 26  FGLAVITCGQLQKGSCIILM-AKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGL-VKK 83
           +GL     G L  G   + +   F  E     +E+  VT+    P     L   G     
Sbjct: 142 YGLYYAITGPLAMGITTVFLEGGFTAENTYDVLERLGVTNFAGSPTAYRMLMAAGADAAA 201

Query: 84  FDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVGYGLTETSGIATMENSFAGSRNIG 143
                L++  S   PL  E++     N+     I   YG TET       ++ A     G
Sbjct: 202 RIKLKLRVASSAGEPLNPEVVRWFQANL--GVTIHDHYGQTETGMPVGNHHALAHEVRAG 259

Query: 144 SAGALAPGVEALIVSVDTQKPLPPNQLGEIWLR----GPNMMRGYYNNEQATKLTIDKKG 199
           S G   PG    ++  D Q PL   + G++ +           GY+++ + T   I    
Sbjct: 260 SMGLPLPGYRIAVLDDDGQ-PLADGEPGQLAIDVASSPLLWFSGYWDDPEKTAELIAG-R 317

Query: 200 WVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 232
           W  TGDL   D DG  + + R  ++I   G+++
Sbjct: 318 WYVTGDLVERDEDGYFWFIGRADDVIISAGYRI 350

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 440

>gnl|CDD|139538 PRK13390, PRK13390, acyl-CoA synthetase; Provisional

 Score = 67.0 bits (163), Expect = 7e-13
 Identities = 58/229 (25%), Positives = 98/229 (42%), Gaps = 24/229 (10%)

Query: 15  VFLCVLPLFHVFGLAVITCGQLQK-GSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLIL 73
           ++    P++H   L    C  +   G  ++L  +FD +  L  +E++R+T   +VP + +
Sbjct: 197 IYYSSAPIYHAAPLR--WCSMVHALGGTVVLAKRFDAQATLGHVERYRITVTQMVPTMFV 254

Query: 74  ALAK--HGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVG------YGLTE 125
            L K    +  ++D+SSL+ V   AAP        C  +V  A +  +G      Y  TE
Sbjct: 255 RLLKLDADVRTRYDVSSLRAVIHAAAP--------CPVDVKHAMIDWLGPIVYEYYSSTE 306

Query: 126 TSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYY 185
             G+  +++    +   GS G    G   L +  D    LP  ++G ++     +   Y 
Sbjct: 307 AHGMTFIDSPDWLAHP-GSVGRSVLG--DLHICDDDGNELPAGRIGTVYFERDRLPFRYL 363

Query: 186 NNEQATKLTIDKKG--WVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 232
           N+ + T          W   GDLG  D DG LY+ DR   +I   G  +
Sbjct: 364 NDPEKTAAAQHPAHPFWTTVGDLGSVDEDGYLYLADRKSFMIISGGVNI 412

Length = 501

>gnl|CDD|213315 cd05968, AACS_like, Uncharacterized acyl-CoA synthetase subfamily similar to Acetoacetyl-CoA synthetase

 Score = 66.5 bits (163), Expect = 9e-13
 Identities = 59/185 (31%), Positives = 89/185 (48%), Gaps = 12/185 (6%)

Query: 53  FLRAIEKHRVTHIWVVPPLILALAKHG--LVKKFDLSSLKLVGSGAAPLGKELMEECAKN 110
             R +E+H+VTH+ + P LI AL  HG   V+  DLSSL+++GS   P   E      + 
Sbjct: 185 LWRIVERHKVTHLGLSPTLIRALRAHGDAPVEGHDLSSLRVLGSTGEPWDPESWLWLFER 244

Query: 111 VPSATVIQVGY-GLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQ 169
           V       + Y G TE SG   + N         S    +PG++A +V  D + P+   +
Sbjct: 245 VGGGRAPIINYSGGTEISG-GILGNVPIRPIKPCSFNGPSPGMDADVVDEDGR-PVRG-E 301

Query: 170 LGEIWLRGP--NMMRGYYNNEQ---ATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKEL 224
           +GE+ +R P   M RG++ + +    T  +     WVH GD    D DG  Y++ R  + 
Sbjct: 302 VGELVVRAPWPGMTRGFWRDPERYLETYWSRFPGVWVH-GDWALVDEDGYWYILGRSDDT 360

Query: 225 IKYKG 229
           IK  G
Sbjct: 361 IKVAG 365

This uncharacterized acyl-CoA synthetase family is highly homologous to acetoacetyl-CoA synthetase. However, the proteins in this family exist in only bacteria and archaea. AACS is a cytosolic ligase that specifically activates acetoacetate to its coenzyme A ester by a two-step reaction. Acetoacetate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is the first step of the mevalonate pathway of isoprenoid biosynthesis via isopentenyl diphosphate. Isoprenoids are a large class of compounds found in all living organisms. Length = 474

>gnl|CDD|213321 cd05974, MACS_like_1, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS)

 Score = 65.9 bits (161), Expect = 1e-12
 Identities = 58/194 (29%), Positives = 87/194 (44%), Gaps = 15/194 (7%)

Query: 39  GSCIILM--AKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSSLKLVGSGA 96
           G+ +  +   +FD   +L A+EK  VT     PP +  +     + ++D+   + V +G 
Sbjct: 151 GATVFGINYPRFDARRYLGALEKFGVTTF-CAPPTVWRMFIQQDLAQYDVRLREAVSAGE 209

Query: 97  APLGKELMEECAKNVPSATVIQVGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALI 156
            PL  E++E   K       I+ GYG TET+  A + NS       GS G   PG    +
Sbjct: 210 -PLNPEVIERVKKAW--GLTIRDGYGQTETT--AMIGNSPGQKVKPGSMGRPLPGYR--V 262

Query: 157 VSVDTQKPLPPNQLGEIWL----RGPNMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGD 212
           V +D +    P   GEI L    R   +M GY  + + T       G+  TGD  Y D D
Sbjct: 263 VLLDDEGKEIPVTEGEIALDLGDRPIGLMLGYMGDPEKTAAAFRG-GYYRTGDKAYRDED 321

Query: 213 GQLYVVDRIKELIK 226
           G L+ V R  ++ K
Sbjct: 322 GYLWFVGRADDVFK 335

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 433

>gnl|CDD|213283 cd05915, ttLC_FACS_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles

 Score = 65.1 bits (158), Expect = 3e-12
 Identities = 61/236 (25%), Positives = 101/236 (42%), Gaps = 25/236 (10%)

Query: 15  VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLI-- 72
           V L V+P+FHV    +     L     ++   + D    +   +   VT    VP +   
Sbjct: 198 VVLPVVPMFHVNAWCLPYAATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLA 257

Query: 73  LALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVGYGLTETSGIATM 132
           LA        +       +VG  AAP     +    +       ++ GYGLTETS +   
Sbjct: 258 LADYLESTGHRLKTLRRLVVGGSAAP---RSLIARFE--RMGVEVRQGYGLTETSPVVVQ 312

Query: 133 ------------ENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPN--QLGEIWLRGP 178
                       E        + +   L   +  L V+ +  +P+P +   LGE+ L+GP
Sbjct: 313 NFVKSHLESLSEEEKL----TLKAKTGLPIPLVRLRVADEEGRPVPKDGKALGEVQLKGP 368

Query: 179 NMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTS 234
            +  GYY NE+AT+  +   G+  TGD+  +D +G + + DR+K+LIK  G  ++S
Sbjct: 369 WITGGYYGNEEATRSALTPDGFFRTGDIAVWDEEGYVEIKDRLKDLIKSGGEWISS 424

This family includes fatty acyl-CoA synthetases that can activate medium-chain to long-chain fatty acids. They catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family has been shown to catalyze the long-chain fatty acid, myristoyl acid, while another member in this family, the AlkK protein identified in Pseudomonas oleovorans, targets medium chain fatty acids. This family also includes an uncharacterized subgroup of FACS. Length = 509

>gnl|CDD|180289 PRK05851, PRK05851, long-chain-fatty-acid--[acyl-carrier-protein] ligase; Validated

 Score = 65.2 bits (159), Expect = 3e-12
 Identities = 50/166 (30%), Positives = 67/166 (40%), Gaps = 23/166 (13%)

Query: 81  VKKFDLSSLKLVGSGAAPLGKELMEECAKNVP----SATVIQVGYGLTETSGIATMENSF 136
           V   DL +L++  +G  P+  +  E  A  +      A      YGL E++   T+    
Sbjct: 266 VSDVDLGALRVALNGGEPVDCDGFERFATAMAPFGFDAGAAAPSYGLAESTCAVTVPVPG 325

Query: 137 AG-------------SRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRG 183
            G             +R     G   PG+E  I   D    +   ++GEI +RG +MM G
Sbjct: 326 IGLRVDEVTTDDGSGARRHAVLGNPIPGMEVRISPGDGAAGVAGREIGEIEIRGASMMSG 385

Query: 184 YYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKG 229
           Y          ID   W  TGDLGY   DG L V  R KELI   G
Sbjct: 386 YLGQA-----PIDPDDWFPTGDLGYL-VDGGLVVCGRAKELITVAG 425

Length = 525

>gnl|CDD|132252 TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate-CoA ligase

 Score = 64.9 bits (158), Expect = 3e-12
 Identities = 49/211 (23%), Positives = 83/211 (39%), Gaps = 5/211 (2%)

Query: 15  VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILA 74
           V L   P+ H  G        L   +  +L   ++       I +  VT      P +  
Sbjct: 238 VILMASPMAHQTGFMYGLMMPLILNATAVLQDIWNPARAAELIRETGVTFTMASTPFLTD 297

Query: 75  LAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVGYGLTETSGIATMEN 134
           L +        + SL       AP+   L+E  A  +  A ++   +G+TE   +   E 
Sbjct: 298 LCRAVKESGAPVPSLFTFLCAGAPIPGILVER-AWELLGALIVS-AWGMTENGAVTVTEP 355

Query: 135 SFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQATKLT 194
             A  +   + G   PGVE  ++  +  K L   + G + +RG +   GY         +
Sbjct: 356 DDALEKASTTDGRPLPGVEVKVIDANGAK-LSQGETGRLLVRGCSNFGGYLKRPHLN--S 412

Query: 195 IDKKGWVHTGDLGYFDGDGQLYVVDRIKELI 225
            D +GW  TGDL + D +G + +  R K++I
Sbjct: 413 TDAEGWFDTGDLAFQDAEGYIRINGRSKDVI 443

Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris. Length = 538

>gnl|CDD|235865 PRK06814, PRK06814, acylglycerophosphoethanolamine acyltransferase; Provisional

 Score = 65.0 bits (159), Expect = 3e-12
 Identities = 68/239 (28%), Positives = 99/239 (41%), Gaps = 55/239 (23%)

Query: 13   DYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLI 72
            D VF   LP+FH FGL   T G       ++L     +++FL         H  ++P LI
Sbjct: 835  DKVF-NALPVFHSFGL---TGG-------LVLPLLSGVKVFLYP----SPLHYRIIPELI 879

Query: 73   L-----------------ALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSAT 115
                              A   H     +D  SL+ V +GA  + +E  +   +      
Sbjct: 880  YDTNATILFGTDTFLNGYARYAHP----YDFRSLRYVFAGAEKVKEETRQTWMEKF--GI 933

Query: 116  VIQVGYGLTETS-GIAT---MENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPP-NQL 170
             I  GYG+TET+  IA    M N        G+ G L PG+E  +       P+P  ++ 
Sbjct: 934  RILEGYGVTETAPVIALNTPMHNKA------GTVGRLLPGIEYRLE------PVPGIDEG 981

Query: 171  GEIWLRGPNMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKG 229
            G +++RGPN+M GY   E    L     GW  TGD+   D +G + +  R K   K  G
Sbjct: 982  GRLFVRGPNVMLGYLRAENPGVLEPPADGWYDTGDIVTIDEEGFITIKGRAKRFAKIAG 1040

Length = 1140

>gnl|CDD|180293 PRK05857, PRK05857, acyl-CoA synthetase; Validated

 Score = 64.6 bits (157), Expect = 5e-12
 Identities = 64/222 (28%), Positives = 95/222 (42%), Gaps = 16/222 (7%)

Query: 20  LPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHG 79
           LP  H+ GL  I    +  G C+      +    L  +  + V    +VP L+  L    
Sbjct: 221 LPATHIGGLWWILTCLMHGGLCV--TGGENTTSLLEILTTNAVATTCLVPTLLSKLVSEL 278

Query: 80  LVKKFDLSSLKLVGSGAA-PLGKELMEECAKNVPSATVIQVGYGLTETSGIATMENSFAG 138
                 + SL+LVG G +  +  ++    A  V +A V    YGL+ET   A    +  G
Sbjct: 279 KSANATVPSLRLVGYGGSRAIAADVRFIEATGVRTAQV----YGLSETGCTALCLPTDDG 334

Query: 139 SRNIGSAGALA---PGVEALIVSVDTQKPLPPN-----QLGEIWLRGPNMMRGYYNNEQA 190
           S     AGA+    PGV+  + + D   P  P        G +W++ P  M GY+NN + 
Sbjct: 335 SIVKIEAGAVGRPYPGVDVYLAATDGIGPTAPGAGPSASFGTLWIKSPANMLGYWNNPER 394

Query: 191 TKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 232
           T   +   GWV+TGDL     DG  Y+  R  E+I   G  +
Sbjct: 395 TA-EVLIDGWVNTGDLLERREDGFFYIKGRSSEMIICGGVNI 435

Length = 540

>gnl|CDD|236071 PRK07638, PRK07638, acyl-CoA synthetase; Validated

 Score = 63.6 bits (155), Expect = 8e-12
 Identities = 45/194 (23%), Positives = 86/194 (44%), Gaps = 8/194 (4%)

Query: 39  GSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSSLKLVGSGAAP 98
           G  + LM KF     L  +E   ++ ++ VP ++ +L K     +   + +K++ SGA  
Sbjct: 209 GQTVHLMRKFIPNQVLDKLETENISVMYTVPTMLESLYK---ENRVIENKMKIISSGAK- 264

Query: 99  LGKELMEECAKNVPSATVIQVGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVS 158
              E  E+     P A + +  YG +E S +  + +     R   S G     V+  I +
Sbjct: 265 WEAEAKEKIKNIFPYAKLYEF-YGASELSFVTALVDE-ESERRPNSVGRPFHNVQVRICN 322

Query: 159 VDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVV 218
               + +   ++G ++++ P    GY          ++  GW+   D+GY D +G +Y+V
Sbjct: 323 EA-GEEVQKGEIGTVYVKSPQFFMGYII-GGVLARELNADGWMTVRDVGYEDEEGFIYIV 380

Query: 219 DRIKELIKYKGFQV 232
            R K +I + G  +
Sbjct: 381 GREKNMILFGGINI 394

Length = 487

>gnl|CDD|213303 cd05937, FATP_chFAT1_like, Uncharacterized subfamily of bifunctional fatty acid transporter/very-long-chain acyl-CoA synthetase in fungi

 Score = 61.7 bits (150), Expect = 4e-11
 Identities = 66/256 (25%), Positives = 98/256 (38%), Gaps = 43/256 (16%)

Query: 13  DYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLI 72
           D  + C +PL+H     +  C  L  G  + L  KF    F + +     T I  V  L 
Sbjct: 129 DRTYTC-MPLYHGTAAFLGLCYCLGSGGTLCLSRKFSASQFWKDVRDSEATIIQYVGELC 187

Query: 73  LALAKHGLVKKFD-LSSLKLV-GSGAAPLGKELMEECAK--NVPSATVIQVGYGLTETSG 128
             L        +D    +++  G+G  P   ++ E   +  NVP    I   Y  TE  G
Sbjct: 188 RYLL-ATPPSPYDRDHKVRVAYGNGLRP---DIWERFRERFNVP---EIGEFYAATE--G 238

Query: 129 IATMENSFAGSRNIGSAGALAP-------GVEALI-VSVDTQKPL-----------PPNQ 169
           +    N   G    G+ G               L+ +  +T  P+           P  +
Sbjct: 239 VFAFTNHNVGPFTAGAIGFSGLIRRWFLENQVFLVKMDPETDMPIRDPKTGFCVRAPVGE 298

Query: 170 LGEIWLRGPNMMR----GYYNNEQAT--KLTID--KKG--WVHTGDLGYFDGDGQLYVVD 219
            GE+  R     R    GY  NE AT  KL  D  +KG  W  TGDL   D DG+ Y +D
Sbjct: 299 PGEMLGRVRFKNRELFQGYLKNEDATESKLLRDVFRKGDIWYRTGDLLRQDADGRWYFLD 358

Query: 220 RIKELIKYKGFQVTSN 235
           R+ +  ++K   V++ 
Sbjct: 359 RLGDTFRWKSENVSTG 374

Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Members of this family are fungal FATPs, including FAT1 from Cochliobolus heterostrophus. Length = 468

>gnl|CDD|213325 cd12117, A_NRPS_Srf_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Bacillus subtilis termination module Surfactin (SrfA-C)

 Score = 59.9 bits (146), Expect = 2e-10
 Identities = 52/215 (24%), Positives = 86/215 (40%), Gaps = 26/215 (12%)

Query: 34  GQLQKGSCIILMAK---FDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSSLK 90
           G L  G  ++L+ K    D +   R I +  VT +W+   L   L          L+ L+
Sbjct: 187 GALLNGGRLVLIDKETLLDPDRLARLIAEQGVTVLWLTAALFNQLVDEDPE---ALAGLR 243

Query: 91  --LVGSGA--APLGKELMEECAKNVPSATVIQVGYGLTETSGIAT---MENSFAGSRNIG 143
             LVG         + ++  C    P   +I  GYG TE +  +T   +      + +I 
Sbjct: 244 QLLVGGDVLSPAHVRRVLAAC----PGLRLIN-GYGPTENTTFSTCHVITRLDEAADSI- 297

Query: 144 SAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQATKL----TIDKKG 199
             G   P     I+  +  +P+P    GE+++ G  +  GY N  + T           G
Sbjct: 298 PIGRPIPNTTVYILD-EEGQPVPIGVPGELYVGGDGLALGYLNRPELTAERFVPDPFGPG 356

Query: 200 --WVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 232
                TGDL  +  DG +  + RI   +K +GF++
Sbjct: 357 ERLYRTGDLARWRPDGNIEFLGRIDRQVKIRGFRI 391

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the adenylation domain of the Bacillus subtilis termination module (Surfactin domain, SrfA-C) which recognizes a specific amino acid building block, which is then activated and transferred to the terminal thiol of the 4'-phosphopantetheine (Ppan) arm of the downstream peptidyl carrier protein (PCP) domain. Length = 474

>gnl|CDD|235313 PRK04813, PRK04813, D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional

 Score = 59.1 bits (144), Expect = 3e-10
 Identities = 52/144 (36%), Positives = 69/144 (47%), Gaps = 19/144 (13%)

Query: 100 GKELMEECAKNV----PSATVIQVGYGLTET----SGIA-TMENSFAGSR-NIGSAGALA 149
           G+EL  + AK +    PSAT+    YG TE     + I  T E      R  IG A    
Sbjct: 269 GEELPHKTAKKLLERFPSATIYNT-YGPTEATVAVTSIEITDEMLDQYKRLPIGYA---K 324

Query: 150 PGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQATK---LTIDKKGWVHTGDL 206
           P    LI+  +  K LP  + GEI + GP++ +GY NN + T     T D +   HTGD 
Sbjct: 325 PDSPLLIIDEEGTK-LPDGEQGEIVISGPSVSKGYLNNPEKTAEAFFTFDGQPAYHTGDA 383

Query: 207 GYFDGDGQLYVVDRIKELIKYKGF 230
           GY + DG L+   RI   IK  G+
Sbjct: 384 GYLE-DGLLFYQGRIDFQIKLNGY 406

Length = 503

>gnl|CDD|236363 PRK09029, PRK09029, O-succinylbenzoic acid--CoA ligase; Provisional

 Score = 58.7 bits (143), Expect = 4e-10
 Identities = 64/208 (30%), Positives = 90/208 (43%), Gaps = 43/208 (20%)

Query: 20  LPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHG 79
           LPLFHV G   I    L  G+ +++  K  LE   +A+     TH  +VP  +  L    
Sbjct: 183 LPLFHVSGQG-IVWRWLYAGATLVVRDKQPLE---QALAG--CTHASLVPTQLWRL---- 232

Query: 80  LVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQV----GYGLTETSGIATMENS 135
           L  + +  SLK V  G A +  EL E+       A    +    GYGLTE      M ++
Sbjct: 233 LDNRSEPLSLKAVLLGGAAIPVELTEQ-------AEQQGIRCWCGYGLTE------MAST 279

Query: 136 FAGSRNIGSAGA--LAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQATKL 193
               R  G AG     PG E  +V             GEIWLRG ++  GY+   Q   L
Sbjct: 280 VCAKRADGLAGVGSPLPGREVKLVD------------GEIWLRGASLALGYWRQGQLVPL 327

Query: 194 TIDKKGWVHTGDLGYFDGDGQLYVVDRI 221
             + +GW  T D G +   G+L ++ R+
Sbjct: 328 V-NDEGWFATRDRGEWQN-GELTILGRL 353

Length = 458

>gnl|CDD|181207 PRK08043, PRK08043, bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated

 Score = 58.6 bits (142), Expect = 6e-10
 Identities = 67/245 (27%), Positives = 101/245 (41%), Gaps = 55/245 (22%)

Query: 16  FLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILA- 74
           F+  LPLFH FGL V     L  G+          E+FL         H  +VP L+   
Sbjct: 409 FMSALPLFHSFGLTVGLFTPLLTGA----------EVFLYP----SPLHYRIVPELVYDR 454

Query: 75  -----------LAKHG-LVKKFDLSSLKLVGSGAAPLGKELMEECAKNV---PSATVIQV 119
                      L  +      +D + L+ V +GA     E ++E  K +        I  
Sbjct: 455 NCTVLFGTSTFLGNYARFANPYDFARLRYVVAGA-----EKLQESTKQLWQDKFGLRILE 509

Query: 120 GYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPP--NQLGEIWLRG 177
           GYG+TE + + ++    A     G+ G + PG++A ++SV       P   Q G + L+G
Sbjct: 510 GYGVTECAPVVSINVPMAA--KPGTVGRILPGMDARLLSV-------PGIEQGGRLQLKG 560

Query: 178 PNMMRGYYNNEQATKLT---------IDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYK 228
           PN+M GY   E+   L            ++GW  TGD+  FD  G + +  R K   K  
Sbjct: 561 PNIMNGYLRVEKPGVLEVPTAENARGEMERGWYDTGDIVRFDEQGFVQIQGRAKRFAKIA 620

Query: 229 GFQVT 233
           G  V+
Sbjct: 621 GEMVS 625

Length = 718

>gnl|CDD|236019 PRK07445, PRK07445, O-succinylbenzoic acid--CoA ligase; Reviewed

 Score = 57.7 bits (140), Expect = 8e-10
 Identities = 59/218 (27%), Positives = 89/218 (40%), Gaps = 40/218 (18%)

Query: 17  LCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALA 76
            CVLPL+HV GL       L  G  +IL      +      E              L+L 
Sbjct: 164 FCVLPLYHVSGLMQFMRSFLTGGKLVIL----PYKRLKSGQELP-----PNPSDFFLSLV 214

Query: 77  KHGLVKKFD-----LSSLKLVGSGAAPLGKELMEECAK-NVPSATVIQVGYGLTET-SGI 129
              L +        L+  + +  G AP    L+E+  +  +  A      YG+TET S I
Sbjct: 215 PTQLQRLLQLRPQWLAQFRTILLGGAPAWPSLLEQARQLQLRLAPT----YGMTETASQI 270

Query: 130 ATM--ENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNN 187
           AT+  ++  AG+    S+G + P           Q  +P NQ G I ++  ++  GYY  
Sbjct: 271 ATLKPDDFLAGNN---SSGQVLPHA---------QITIPANQTGNITIQAQSLALGYYPQ 318

Query: 188 EQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELI 225
                  +D +G   T DLGY D  G L+++ R  + I
Sbjct: 319 ------ILDSQGIFETDDLGYLDAQGYLHILGRNSQKI 350

Length = 452

>gnl|CDD|237144 PRK12582, PRK12582, acyl-CoA synthetase; Provisional

 Score = 57.7 bits (140), Expect = 9e-10
 Identities = 37/134 (27%), Positives = 56/134 (41%), Gaps = 15/134 (11%)

Query: 80  LVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSAT----VIQVGYGLTETSGIATMENS 135
           L + F   +L+L+  G A L  +L E         T        GYG TET+   T   +
Sbjct: 340 LRRSF-FKNLRLMAYGGATLSDDLYERMQALAVRTTGHRIPFYTGYGATETAPTTT--GT 396

Query: 136 FAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQATKLTI 195
              +  +G  G   PGVE         K  P     E+ ++GPN+  GY+ + + T    
Sbjct: 397 HWDTERVGLIGLPLPGVEL--------KLAPVGDKYEVRVKGPNVTPGYHKDPELTAAAF 448

Query: 196 DKKGWVHTGDLGYF 209
           D++G+   GD   F
Sbjct: 449 DEEGFYRLGDAARF 462

Length = 624

>gnl|CDD|235673 PRK06018, PRK06018, putative acyl-CoA synthetase; Provisional

 Score = 57.5 bits (139), Expect = 1e-09
 Identities = 62/238 (26%), Positives = 100/238 (42%), Gaps = 32/238 (13%)

Query: 15  VFLCVLPLFHV--FGLAVITCGQLQKGSCIILM--AKFDLEMFLRAIEKHRVTHIWVVPP 70
             L V+PLFH   +G+A        K    ++M  AK D       ++  +VT    VP 
Sbjct: 222 TMLPVVPLFHANSWGIAFSAPSMGTK----LVMPGAKLDGASVYELLDTEKVTFTAGVPT 277

Query: 71  LILALAKHGLVKKFDLSSLKLVGSGAAPLGKELM---EECAKNVPSATVIQVGYGLTETS 127
           + L L ++   +   L  LK+V  G + + + ++   E+    V  A      +G+TE S
Sbjct: 278 VWLMLLQYMEKEGLKLPHLKMVVCGGSAMPRSMIKAFEDMGVEVRHA------WGMTEMS 331

Query: 128 GIAT-------MENSFAGSR-NIGSAGALAP-GVEALIVSVDTQKPLP--PNQLGEIWLR 176
            + T              +R ++       P GVE  I   D  K LP      G + +R
Sbjct: 332 PLGTLAALKPPFSKLPGDARLDVLQKQGYPPFGVEMKITD-DAGKELPWDGKTFGRLKVR 390

Query: 177 GPNMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTS 234
           GP +   YY  +      +D  G+  TGD+   D  G + + DR K++IK  G  ++S
Sbjct: 391 GPAVAAAYYRVDGEI---LDDDGFFDTGDVATIDAYGYMRITDRSKDVIKSGGEWISS 445

Length = 542

>gnl|CDD|235908 PRK07008, PRK07008, long-chain-fatty-acid--CoA ligase; Validated

 Score = 55.9 bits (135), Expect = 4e-09
 Identities = 62/233 (26%), Positives = 99/233 (42%), Gaps = 22/233 (9%)

Query: 15  VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILA 74
             L V+P+FHV    +     L     ++     D +     IE  RVT    VP + L 
Sbjct: 221 AVLPVVPMFHVNAWGLPYSAPLTGAKLVLPGPDLDGKSLYELIEAERVTFSAGVPTVWLG 280

Query: 75  LAKHGLVKKFDLSSLK--LVGSGAAPLGKELMEECAKNVPSATVIQVGYGLTETSGIAT- 131
           L  H        S+L+  ++G  A P     M    ++     VI   +G+TE S + T 
Sbjct: 281 LLNHMREAGLRFSTLRRTVIGGSACP---PAMIRTFEDEYGVEVIH-AWGMTEMSPLGTL 336

Query: 132 -------MENSFAGSRNI-GSAGALAPGVEALIVSVDTQKPLPPN--QLGEIWLRGPNMM 181
                   +      R +    G +  GV+  IV  D  + LP +    G++ +RGP ++
Sbjct: 337 CKLKWKHSQLPLDEQRKLLEKQGRVIYGVDMKIVG-DDGRELPWDGKAFGDLQVRGPWVI 395

Query: 182 RGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTS 234
             Y+  + A+ L     GW  TGD+   D DG + + DR K++IK  G  ++S
Sbjct: 396 DRYFRGD-ASPLV---DGWFPTGDVATIDADGFMQITDRSKDVIKSGGEWISS 444

Length = 539

>gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional

 Score = 56.1 bits (135), Expect = 4e-09
 Identities = 46/209 (22%), Positives = 82/209 (39%), Gaps = 15/209 (7%)

Query: 36   LQKGSCIILMAK--FDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSSLKLVG 93
            L  G+ +++     +D E     I +HRVT +   P  +  LA+H      +  SL++  
Sbjct: 4757 LINGASVVIRDDSLWDPERLYAEIHEHRVTVLVFPPVYLQQLAEHAERDG-EPPSLRVYC 4815

Query: 94   SGAAPLGKELMEECAKNVPSATVIQVGYGLTETSGIATMENSFAGSRNIGSA---GALAP 150
             G   + +   +   + +    +   GYG TET+    +  +  G     +    G    
Sbjct: 4816 FGGEAVAQASYDLAWRALKPVYLFN-GYGPTETTVTVLLWKARDGDACGAAYMPIGTPLG 4874

Query: 151  GVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNN-----EQATKLTIDKKG--WVHT 203
                 ++      PLP    GE++L G  + RGY        E+         G     T
Sbjct: 4875 NRSGYVLDGQLN-PLPVGVAGELYLGGEGVARGYLERPALTAERFVPDPFGAPGGRLYRT 4933

Query: 204  GDLGYFDGDGQLYVVDRIKELIKYKGFQV 232
            GDL  +  DG +  + R+   +K +GF++
Sbjct: 4934 GDLARYRADGVIDYLGRVDHQVKIRGFRI 4962

Length = 5163

>gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional

 Score = 56.1 bits (135), Expect = 4e-09
 Identities = 42/194 (21%), Positives = 76/194 (39%), Gaps = 16/194 (8%)

Query: 48  FDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEEC 107
            D    +  I +  V  +  VP ++ A  +   V     +SL+ +      L  +  E+ 
Sbjct: 733 RDPAKLVELINREGVDTLHFVPSMLQAFLQDEDVA--SCTSLRRIVCSGEALPADAQEQV 790

Query: 108 AKNVPSATVIQVGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPP 167
              +P A +  + YG TE +   T         +    G     +   I+  + + P+P 
Sbjct: 791 FAKLPQAGLYNL-YGPTEAAIDVTHWTCVEEGGDSVPIGRPIANLACYILDANLE-PVPV 848

Query: 168 NQLGEIWLRGPNMMRGYYNNEQATKLTIDK---------KGWVHTGDLGYFDGDGQLYVV 218
             LGE++L G  + RGY+       LT ++         +    TGDL  +  DG +   
Sbjct: 849 GVLGELYLAGRGLARGYH---GRPGLTAERFVPSPFVAGERMYRTGDLARYRADGVIEYA 905

Query: 219 DRIKELIKYKGFQV 232
            RI   +K +G ++
Sbjct: 906 GRIDHQVKLRGLRI 919

Length = 5163

>gnl|CDD|236175 PRK08180, PRK08180, feruloyl-CoA synthase; Reviewed

 Score = 54.9 bits (133), Expect = 8e-09
 Identities = 44/151 (29%), Positives = 68/151 (45%), Gaps = 30/151 (19%)

Query: 71  LILALAK-HGLVKKFDLSSLKLVGSGAAPLGKEL--------MEECAKNVPSATVIQVGY 121
           L+ AL +   L ++F  S LKL+    A L +++           C + +   T    G 
Sbjct: 318 LVPALERDAALRRRF-FSRLKLLFYAGAALSQDVWDRLDRVAEATCGERIRMMT----GL 372

Query: 122 GLTETSGIATM---ENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGP 178
           G+TET+  AT      S AG  NIG     APG E  +V V  +         E+ ++GP
Sbjct: 373 GMTETAPSATFTTGPLSRAG--NIG---LPAPGCEVKLVPVGGKL--------EVRVKGP 419

Query: 179 NMMRGYYNNEQATKLTIDKKGWVHTGDLGYF 209
           N+  GY+   + T    D++G+  +GD   F
Sbjct: 420 NVTPGYWRAPELTAEAFDEEGYYRSGDAVRF 450

Length = 614

>gnl|CDD|234677 PRK00174, PRK00174, acetyl-CoA synthetase; Provisional

 Score = 54.4 bits (132), Expect = 1e-08
 Identities = 60/197 (30%), Positives = 83/197 (42%), Gaps = 42/197 (21%)

Query: 57  IEKHRVTHIWVVPPLILALAKHG--LVKKFDLSSLKLVGSGAAP------------LGKE 102
           I+KH+VT  +  P  I AL K G    KK+DLSSL+L+GS   P            +G E
Sbjct: 335 IDKHKVTIFYTAPTAIRALMKEGDEHPKKYDLSSLRLLGSVGEPINPEAWEWYYKVVGGE 394

Query: 103 LMEECAKNVP-SATVIQVGYGLTETSGIATMENSFAGSRNI--GSAGALAPGVEALIVSV 159
                    P   T  Q     TET GI  M     G+  +  GSA    PG++  +V  
Sbjct: 395 -------RCPIVDTWWQ-----TETGGI--MITPLPGATPLKPGSATRPLPGIQPAVVD- 439

Query: 160 DTQKPLPPNQLG-----EIWLRGPNMMRGYYNNEQATKLTI--DKKGWVHTGDLGYFDGD 212
           +   PL   + G     + W   P MMR  Y + +    T     KG   TGD    D D
Sbjct: 440 EEGNPLEGGEGGNLVIKDPW---PGMMRTIYGDHERFVKTYFSTFKGMYFTGDGARRDED 496

Query: 213 GQLYVVDRIKELIKYKG 229
           G  ++  R+ +++   G
Sbjct: 497 GYYWITGRVDDVLNVSG 513

Length = 637

>gnl|CDD|233551 TIGR01734, D-ala-DACP-lig, D-alanine--poly(phosphoribitol) ligase, subunit 1

 Score = 54.0 bits (130), Expect = 1e-08
 Identities = 43/146 (29%), Positives = 68/146 (46%), Gaps = 19/146 (13%)

Query: 100 GKELMEECAKNV----PSATVIQVGYGLTETSGIATMENSFAGSRNIGSA------GALA 149
           G+EL  + AK +    P AT+    YG TE +   T   S   ++ I         G   
Sbjct: 267 GEELPVKTAKALLERFPKATIYNT-YGPTEATVAVT---SVKITQEILDQYPRLPIGFAK 322

Query: 150 PGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQATK---LTIDKKGWVHTGDL 206
           P +   I+  + + PLP  + GEI + GP++ +GY NN + T     + + +    TGD 
Sbjct: 323 PDMNLFIMDEEGE-PLPEGEKGEIVIVGPSVSKGYLNNPEKTAEAFFSHEGQPAYRTGDA 381

Query: 207 GYFDGDGQLYVVDRIKELIKYKGFQV 232
           G    DGQL+   R+   IK  G+++
Sbjct: 382 GTIT-DGQLFYQGRLDFQIKLHGYRI 406

This model represents the enzyme (also called D-alanine-D-alanyl carrier protein ligase) which activates D-alanine as an adenylate via the reaction D-ala + ATP -> D-ala-AMP + PPi, and further catalyzes the condensation of the amino acid adenylate with the D-alanyl carrier protein (D-ala-ACP). The D-alanine is then further transferred to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram positive bacteria, both polysacchatides [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan]. Length = 502

>gnl|CDD|213323 cd12115, A_NRPS_Sfm_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Saframycin A gene cluster from Streptomyces lavendulae

 Score = 53.1 bits (128), Expect = 3e-08
 Identities = 55/212 (25%), Positives = 89/212 (41%), Gaps = 30/212 (14%)

Query: 36  LQKGSCIIL----MAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSSLKL 91
           L  G  ++L    +A  DL        K  VT I  VP     L +H  +     SS++ 
Sbjct: 168 LSTGGRVVLADNALALPDLP------AKAEVTLINTVPSAARELLRHDALP----SSVRT 217

Query: 92  VGSGAAPLGKELMEECAKNVPSATVIQVGYGLTETSGIAT---MENSFAGSRNIGSAGAL 148
           V     PL +EL++          V  + YG +E +  +T   +E   + + +IG     
Sbjct: 218 VNLAGEPLPQELVQRLYALPQVERVYNL-YGPSEDTTYSTYAEVEPGASRTPSIGRP--- 273

Query: 149 APGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQATK---LTIDKKGWVH--- 202
             G +A ++     +P+P    GE+++ G  + RGY    + T    L     G      
Sbjct: 274 LAGTQAYVLD-AHLQPVPVGVPGELYIGGAGVARGYLGRPELTAERFLPNPFAGSPGERL 332

Query: 203 --TGDLGYFDGDGQLYVVDRIKELIKYKGFQV 232
             TGDL     DGQL  + RI + +K +GF++
Sbjct: 333 YRTGDLVRRRADGQLEYLGRIDDQVKVRGFRI 364

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the saframycin A gene cluster from Streptomyces lavendulae which implicates the NRPS system for assembling the unusual tetrapeptidyl skeleton in an iterative manner. It also includes saframycin Mx1 produced by Myxococcus xanthus NRPS. Length = 449

>gnl|CDD|240370 PTZ00342, PTZ00342, acyl-CoA synthetase; Provisional

 Score = 52.8 bits (127), Expect = 5e-08
 Identities = 33/110 (30%), Positives = 57/110 (51%), Gaps = 7/110 (6%)

Query: 120 GYGLTETSG-IATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKP--LPPNQLGEIWLR 176
           GYGLTET+G I         + +IG  G ++P  +  + + +T K     P   GE+ ++
Sbjct: 492 GYGLTETTGPIFVQHADDNNTESIG--GPISPNTKYKVRTWETYKATDTLPK--GELLIK 547

Query: 177 GPNMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIK 226
             ++  GY+  ++ TK    + G+  TGD+   + +G L  +DR K L+K
Sbjct: 548 SDSIFSGYFLEKEQTKNAFTEDGYFKTGDIVQINKNGSLTFLDRSKGLVK 597

Length = 746

>gnl|CDD|213288 cd05921, FCS, Feruloyl-CoA synthetase (FCS)

 Score = 52.2 bits (126), Expect = 6e-08
 Identities = 32/134 (23%), Positives = 55/134 (41%), Gaps = 28/134 (20%)

Query: 87  SSLKLVGSGAAPLGKEL--------MEECAKNVPSATVIQVGYGLTETSGIATM---ENS 135
             L+L+    A L +++        +    + +P  +    G G TET+  AT       
Sbjct: 289 KRLRLLFYAGAALPQDVWDRLQALAVRTTGERIPMTS----GLGATETAPTATFVHWPTD 344

Query: 136 FAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQATKLTI 195
            +G   IG     APG E  +V    +         E+ ++GPN+  GY+ + + T    
Sbjct: 345 RSG--VIG---LPAPGTELKLVPNGGKL--------EVRVKGPNVTPGYWRDPELTAEAF 391

Query: 196 DKKGWVHTGDLGYF 209
           D++G+   GD   F
Sbjct: 392 DEEGFYRIGDAVRF 405

Feruloyl-CoA synthetase is an essential enzyme in the feruloyl acid degradation pathway and enables some proteobacteria to grow on media containing feruloyl acid as the sole carbon source. It catalyzes the transfer of CoA to the carboxyl group of ferulic acid, which then forms feruloyl-CoA in the presence of ATP and Mg2. The resulting feruloyl-CoA is further degraded to vanillin and acetyl-CoA. Feruloyl-CoA synthetase (FCS) is a subfamily of the adenylate-forming enzymes superfamily. Length = 559

>gnl|CDD|213324 cd12116, A_NRPS_Ta1_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including salinosporamide A polyketide synthase

 Score = 52.2 bits (126), Expect = 6e-08
 Identities = 46/191 (24%), Positives = 80/191 (41%), Gaps = 26/191 (13%)

Query: 54  LRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPS 113
            R I   R+T +   P     L   G   +  L++L     G   L ++L E        
Sbjct: 177 ARLIADERITIMQATPATWRMLLAAGWRGRESLTAL----CGGEALPRDLAERLLSTG-- 230

Query: 114 ATVIQVGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEI 173
           A +  + YG TET+  +T     A    + + G      +  ++  D  +P+PP   GE+
Sbjct: 231 AELWNM-YGPTETTIWSTCARVTAADGPV-TIGRPIANTQVYVLDED-LQPVPPGVPGEL 287

Query: 174 WLRGPNMMRGYYNNEQATKLTIDKKGWVH------------TGDLGYFDGDGQLYVVDRI 221
           ++ G  + RGY    +   LT ++  +V             TGDL  +  DG+L  + R 
Sbjct: 288 YIGGDGVARGYLGRPE---LTAER--FVPDPFDDPGGRLYRTGDLVRWRPDGRLEYLGRA 342

Query: 222 KELIKYKGFQV 232
            + +K +GF++
Sbjct: 343 DDQVKIRGFRI 353

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the myxovirescin (TA) antibiotic biosynthetic gene in Myxococcus xanthus; TA production plays a role in predation. It also includes the salinosporamide A polyketide synthase which is involved in the biosynthesis of salinosporamide A, a marine microbial metabolite whose chlorine atom is crucial for potent proteasome inhibition and anticancer activity. Length = 438

>gnl|CDD|213322 cd12114, A_NRPS_TlmIV_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Streptoalloteichus tallysomycin biosynthesis genes

 Score = 51.8 bits (125), Expect = 7e-08
 Identities = 47/199 (23%), Positives = 78/199 (39%), Gaps = 36/199 (18%)

Query: 54  LRAIEKHRVTHIW-VVPPLILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVP 112
              +++H VT +W  VP L+  L  +       L SL+LV      +  +L        P
Sbjct: 210 AELVQRHGVT-VWNSVPALMDMLLTYAEDAARLLPSLRLVMLSGDWIPLDLPRRLRALAP 268

Query: 113 SATVIQVGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQL-- 170
            A ++ +G G TE S              I S       V+    S+   KPLP  +   
Sbjct: 269 GARLVSLG-GATEAS--------------IWSIYYPIDDVDPDWRSIPYGKPLPNQKFYV 313

Query: 171 -------------GEIWLRGPNMMRGYYNNEQAT--KLTIDKKG--WVHTGDLGYFDGDG 213
                        GE+++ G  +  GY+ + + T  +    + G     TGDLG +  DG
Sbjct: 314 LDEDGRDCPDWVPGELYIGGVGVALGYWGDPELTAERFITHRTGERLYRTGDLGRYRPDG 373

Query: 214 QLYVVDRIKELIKYKGFQV 232
            +  + R    +K +G++V
Sbjct: 374 TIEFLGRADHQVKIRGYRV 392

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the TLM biosynthetic gene cluster from Streptoalloteichus that consists of nine NRPS genes; the N-terminal module of TlmVI (NRPS-5) and the starter module of BlmVI (NRPS-5) are comprised of the acyl CoA ligase (AL) and acyl carrier protein (ACP)-like domains, which are thought to be involved in the biosynthesis of the beta-aminoalaninamide moiety. Length = 476

>gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional

 Score = 52.1 bits (125), Expect = 8e-08
 Identities = 51/197 (25%), Positives = 85/197 (43%), Gaps = 19/197 (9%)

Query: 49   DLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECA 108
            D E  ++ IE+ +VT +  VP ++  L +     +  LS  ++V  G A L  E +    
Sbjct: 1797 DPEQLIQLIERQQVTTLHFVPSMLQQLLQMDEQVEHPLSLRRVVCGGEA-LEVEALRPWL 1855

Query: 109  KNVPSATVIQVGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQ------ 162
            + +P   +    YG TET     ++ +    R     G  +  +   I ++ T       
Sbjct: 1856 ERLPDTGLFN-LYGPTET----AVDVTHWTCRRKDLEGRDSVPIGQPIANLSTYILDASL 1910

Query: 163  KPLPPNQLGEIWLRGPNMMRGYYN--NEQATKLTIDKKGWV-----HTGDLGYFDGDGQL 215
             P+P    GE++L G  + RGY N     A +   D  G V      TGDL  +  DG +
Sbjct: 1911 NPVPIGVAGELYLGGVGLARGYLNRPALTAERFVADPFGTVGSRLYRTGDLARYRADGVI 1970

Query: 216  YVVDRIKELIKYKGFQV 232
              + RI   +K +GF++
Sbjct: 1971 EYLGRIDHQVKIRGFRI 1987

Length = 3956

>gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional

 Score = 52.3 bits (125), Expect = 9e-08
 Identities = 48/198 (24%), Positives = 72/198 (36%), Gaps = 21/198 (10%)

Query: 49   DLEMFLRAIEKHRVTHIWVVPPLIL-ALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEEC 107
            D E     +E+H VT I   PP+ L  LA+H        +       G A +    +   
Sbjct: 2224 DPEQLYDEMERHGVT-ILDFPPVYLQQLAEHAERDGRPPAVRVYCFGGEA-VPAASLRLA 2281

Query: 108  AKNVPSATVIQVGYGLTETSGIATMENSFAGSRNIGSAGALAP------GVEALIVSVDT 161
             + +    +   GYG TE      +   +          A  P         A I+  D 
Sbjct: 2282 WEALRPVYLFN-GYGPTEAVVTPLL---WKCRPQDPCGAAYVPIGRALGNRRAYILDADL 2337

Query: 162  QKPLPPNQLGEIWLRGPNMMRGYYNNE--QATKLTIDKKGWV-----HTGDLGYFDGDGQ 214
               L P   GE++L G  + RGY N     A +   D           TGDL  +  DG 
Sbjct: 2338 N-LLAPGMAGELYLGGEGLARGYLNRPGLTAERFVPDPFSASGERLYRTGDLARYRADGV 2396

Query: 215  LYVVDRIKELIKYKGFQV 232
            +  + RI   +K +GF++
Sbjct: 2397 VEYLGRIDHQVKIRGFRI 2414

Length = 5163

>gnl|CDD|213273 cd05905, Dip2, Disco-interacting protein 2 (Dip2)

 Score = 50.2 bits (120), Expect = 3e-07
 Identities = 29/105 (27%), Positives = 42/105 (40%), Gaps = 21/105 (20%)

Query: 146 GALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQATKLT----------- 194
           G + PG +  IV+ DT      +++GEIW+        YY     TK T           
Sbjct: 356 GMVMPGAQMCIVNPDTPPLCRTDEIGEIWVNSSANATSYYGLTGMTKNTFEVFPNSSSDG 415

Query: 195 IDKKGWVHTGDLGYF----------DGDGQLYVVDRIKELIKYKG 229
           I +  +V TG LG+              G L+VV  I E ++  G
Sbjct: 416 IGENPYVRTGLLGFVGPTSHSMGPVVDMGLLFVVGSIDETLEVSG 460

Dip2 proteins show sequence similarity to other members of the adenylate forming enzyme family, including insect luciferase, acetyl CoA ligases and the adenylation domain of nonribosomal peptide synthetases (NRPS). However, its function may have diverged from other members of the superfamily. In mouse embryo, Dip2 homolog A plays an important role in the development of both vertebrate and invertebrate nervous systems. Dip2A appears to regulate cell growth and the arrangement of cells in organs. Biochemically, Dip2A functions as a receptor of FSTL1, an extracellular glycoprotein, and may play a role as a cardiovascular protective agent. Length = 556

>gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional

 Score = 48.2 bits (115), Expect = 2e-06
 Identities = 48/211 (22%), Positives = 83/211 (39%), Gaps = 20/211 (9%)

Query: 36   LQKGSCIILMAK--FDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSSLKLVG 93
            L  G C+++     +D E   +AI  HR++     P  +   A+       D +SL +  
Sbjct: 3300 LICGGCLVVRDNDLWDPEELWQAIHAHRISIACFPPAYLQQFAEDAGGA--DCASLDIYV 3357

Query: 94   SGAAPLGKELMEECAKNVPSATVIQVGYGLTETSGIATMENSFAGSRNIGSAGALAPGVE 153
             G   +     E+  + +    +   GYG TE     T+      +        +   V 
Sbjct: 3358 FGGEAVPPAAFEQVKRKLKPRGLTN-GYGPTEAVVTVTLWKCGGDAVCEAPYAPIGRPVA 3416

Query: 154  AL-IVSVDTQ-KPLPPNQLGEIWLRGPNMMRGYYNNEQATKLTIDK----------KGWV 201
               I  +D Q  P+P    GE+++ G  + RGY+   Q   LT ++              
Sbjct: 3417 GRSIYVLDGQLNPVPVGVAGELYIGGVGLARGYH---QRPSLTAERFVADPFSGSGGRLY 3473

Query: 202  HTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 232
             TGDL  +  DG +  + RI   +K +GF++
Sbjct: 3474 RTGDLARYRADGVIEYLGRIDHQVKIRGFRI 3504

Length = 3956

>gnl|CDD|235134 PRK03584, PRK03584, acetoacetyl-CoA synthetase; Provisional

 Score = 47.9 bits (115), Expect = 2e-06
 Identities = 22/83 (26%), Positives = 34/83 (40%), Gaps = 14/83 (16%)

Query: 23  FHVFGLAVITCGQLQKGSCIILM----AKFDLEMFLRAIEKHRVTHIWVVPPLILALAKH 78
           + V GL V        G+ ++L        D  +      +  VT        + A  K 
Sbjct: 321 WLVSGLLV--------GATLVLYDGSPFYPDPNVLWDLAAEEGVTVFGTSAKYLDACEKA 372

Query: 79  GLV--KKFDLSSLKLVGSGAAPL 99
           GLV  +  DLS+L+ +GS  +PL
Sbjct: 373 GLVPGETHDLSALRTIGSTGSPL 395

Length = 655

>gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional

 Score = 47.8 bits (114), Expect = 3e-06
 Identities = 55/211 (26%), Positives = 87/211 (41%), Gaps = 16/211 (7%)

Query: 34  GQLQKGSCIILMAK---FDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSSLK 90
           G L  G+ + L+      D E F   +    VT + +VP  + AL +   V         
Sbjct: 717 GALASGATLHLLPPDCARDAEAFAALMADQGVTVLKIVPSHLQALLQASRVAL-PRPQRA 775

Query: 91  LVGSGAAPLGKELMEECAKNVPSATVIQVGYGLTETS-GIATMENSFAGSRNIGSA-GAL 148
           LV  G A L  +L+       P A +I   YG TET+ G++T E S           G  
Sbjct: 776 LVCGGEA-LQVDLLARVRALGPGARLINH-YGPTETTVGVSTYELSDEERDFGNVPIGQP 833

Query: 149 APGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNE--QATKLTIDKKG-----WV 201
              +   I+      P+P   +GE+++ G  + RGY+      A +   D  G       
Sbjct: 834 LANLGLYILDHYLN-PVPVGVVGELYIGGAGLARGYHRRPALTAERFVPDPFGADGGRLY 892

Query: 202 HTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 232
            TGDL  +  DG +  + R+   +K +GF++
Sbjct: 893 RTGDLARYRADGVIEYLGRMDHQVKIRGFRI 923

Length = 3956

>gnl|CDD|180167 PRK05620, PRK05620, long-chain-fatty-acid--CoA ligase; Validated

 Score = 47.5 bits (113), Expect = 3e-06
 Identities = 59/243 (24%), Positives = 91/243 (37%), Gaps = 38/243 (15%)

Query: 16  FLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKH--RVTHIWVVPPLIL 73
           FLC +P++HV    V     +     +            + I     RV H   VP L +
Sbjct: 227 FLCCVPIYHVLSWGVPLAAFMSGTPLVFPGPDLSAPTLAKIIATAMPRVAH--GVPTLWI 284

Query: 74  ALAKHGLV---KKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVGYGLTETSGIA 130
            L  H L    ++  L  + + GS   P+  +  EE         V+ V +G+TETS + 
Sbjct: 285 QLMVHYLKNPPERMSLQEIYVGGSAVPPILIKAWEERY----GVDVVHV-WGMTETSPVG 339

Query: 131 TMENSFAGSRNIG------SAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGP------ 178
           T+    +G           S G     +E  IV+            GEI +RG       
Sbjct: 340 TVARPPSGVSGEARWAYRVSQGRFPASLEYRIVNDGQVMESTDRNEGEIQVRGNWVTASY 399

Query: 179 ------------NMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIK 226
                       +  RG    +   + T D  GW+ TGD+G    DG L + DR +++I+
Sbjct: 400 YHSPTEEGGGAASTFRGEDVEDANDRFTAD--GWLRTGDVGSVTRDGFLTIHDRARDVIR 457

Query: 227 YKG 229
             G
Sbjct: 458 SGG 460

Length = 576

>gnl|CDD|139531 PRK13383, PRK13383, acyl-CoA synthetase; Provisional

 Score = 46.9 bits (111), Expect = 3e-06
 Identities = 56/220 (25%), Positives = 88/220 (40%), Gaps = 21/220 (9%)

Query: 20  LPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPL---ILALA 76
           +P+FH  GL ++    +  G  ++    FD E  L     HR      VP +   IL L 
Sbjct: 224 MPMFHGLGLGMLML-TIALGGTVLTHRHFDAEAALAQASLHRADAFTAVPVVLARILELP 282

Query: 77  KHGLVKKFDLSSLKLVGSGA----APLGKELMEECAKNVPSATVIQVGYGLTETSGIATM 132
              +  +  L  L++V S        LG+  M+          ++  GYG TE  GI  +
Sbjct: 283 PR-VRARNPLPQLRVVMSSGDRLDPTLGQRFMDT------YGDILYNGYGSTEV-GIGAL 334

Query: 133 ENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQATK 192
                      + G    G    I+  +  +P+ P   G I++ G      Y   +   K
Sbjct: 335 ATPADLRDAPETVGKPVAGCPVRILDRNN-RPVGPRVTGRIFVGGELAGTRY--TDGGGK 391

Query: 193 LTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 232
             +D  G   TGD+GY D  G+L++V R  ++I   G  V
Sbjct: 392 AVVD--GMTSTGDMGYLDNAGRLFIVGREDDMIISGGENV 429

Length = 516

>gnl|CDD|213308 cd05943, AACS, Acetoacetyl-CoA synthetase (acetoacetate-CoA ligase, AACS)

 Score = 43.8 bits (104), Expect = 4e-05
 Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 2/65 (3%)

Query: 49  DLEMFLRAIEKHRVTHIWVVPPLILALAKHGLV--KKFDLSSLKLVGSGAAPLGKELMEE 106
           D ++  R   K  +T        + AL K G+   +  DLSSL+ + S  +PL  E  + 
Sbjct: 316 DPDVLWRLAAKLGITIFGTSAKYLDALEKAGIEPGRTHDLSSLRTILSTGSPLPPEGFDW 375

Query: 107 CAKNV 111
              +V
Sbjct: 376 VYSHV 380

AACS is a cytosolic ligase that specifically activates acetoacetate to its coenzyme A ester by a two-step reaction. Acetoacetate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is the first step of the mevalonate pathway of isoprenoid biosynthesis via isopentenyl diphosphate. Isoprenoids are a large class of compounds found in all living organisms. AACS is widely distributed in bacteria, archaea and eukaryotes. In bacteria, AACS is known to exhibit an important role in the metabolism of poly-b-hydroxybutyrate, an intracellular reserve of organic carbon and chemical energy by some microorganisms. In mammals, AACS influences the rate of ketone body utilization for the formation of physiologically important fatty acids and cholesterol. Length = 616

>gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated

 Score = 44.0 bits (104), Expect = 5e-05
 Identities = 52/187 (27%), Positives = 80/187 (42%), Gaps = 19/187 (10%)

Query: 57   IEKHRVTHIWVVPPLILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATV 116
            ++++ VT +  VPPL+       L      +SL+ + SG   L  EL     + +P    
Sbjct: 1360 VQQYGVTTLHFVPPLLQLFIDEPLAA--ACTSLRRLFSGGEALPAELRNRVLQRLPQVQ- 1416

Query: 117  IQVGYGLTETSGIATMENSFA--GSRN-IGSAGALAPGVEALIVSVDTQ-KPLPPNQLGE 172
            +   YG TET+   T     A  G R+ IG      P    L   +D +   LPP   GE
Sbjct: 1417 LHNRYGPTETAINVTHWQCQAEDGERSPIGR-----PLGNVLCRVLDAELNLLPPGVAGE 1471

Query: 173  IWLRGPNMMRGYYNNE--QATKLTIDKKG-----WVHTGDLGYFDGDGQLYVVDRIKELI 225
            + + G  + RGY       A +   D  G        TGD   ++ DG L  + R+ + +
Sbjct: 1472 LCIGGAGLARGYLGRPALTAERFVPDPLGEDGARLYRTGDRARWNADGALEYLGRLDQQV 1531

Query: 226  KYKGFQV 232
            K +GF+V
Sbjct: 1532 KLRGFRV 1538

Length = 4334

>gnl|CDD|182517 PRK10524, prpE, propionyl-CoA synthetase; Provisional

 Score = 43.4 bits (103), Expect = 6e-05
 Identities = 39/138 (28%), Positives = 57/138 (41%), Gaps = 26/138 (18%)

Query: 55  RAIEKHRVTHIWVVPPLILALAKHG--LVKKFDLSSLKLVGSGAAPL----GKELMEECA 108
           R +EK++V  ++  P  I  L K    L++K DLSSL+ +     PL       + E  A
Sbjct: 321 RIVEKYKVNRMFSAPTAIRVLKKQDPALLRKHDLSSLRALFLAGEPLDEPTASWISE--A 378

Query: 109 KNVPSATVIQVGYGLTETS--------GIATMENSFAGSRNIGSAGALAPGVEALIVSVD 160
             VP   VI   Y  TET         G+             GS G    G    +++  
Sbjct: 379 LGVP---VID-NYWQTETGWPILAIARGVEDRPTRL------GSPGVPMYGYNVKLLNEV 428

Query: 161 TQKPLPPNQLGEIWLRGP 178
           T +P  PN+ G + + GP
Sbjct: 429 TGEPCGPNEKGVLVIEGP 446

Length = 629

>gnl|CDD|233803 TIGR02262, benz_CoA_lig, benzoate-CoA ligase family

 Score = 42.9 bits (101), Expect = 7e-05
 Identities = 54/229 (23%), Positives = 92/229 (40%), Gaps = 21/229 (9%)

Query: 13  DYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDL--EMFLRAIEKHRVTHIWVVPP 70
           D V      LF  +GL       +  G+  +LM +      +F R + +H+ T  + VP 
Sbjct: 203 DDVVFSAAKLFFAYGLGNALTFPMSVGATTVLMGERPTPDAVFDR-LRRHQPTIFYGVPT 261

Query: 71  LILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVGYGLTETSGIA 130
           L  A+     +   D   L+L  S     G+ L  E  +        Q  +G+    GI 
Sbjct: 262 LYAAMLADPNLPAEDQVRLRLCTSA----GEALPAEVGQR------WQARFGVDIVDGIG 311

Query: 131 TME------NSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGY 184
           + E      ++  G    G++G   PG    +V  D  + +   + GE+ + GP+    Y
Sbjct: 312 STEMLHIFLSNLPGDVRYGTSGKPVPGYRLRLVG-DGGQDVAAGEPGELLISGPSSATMY 370

Query: 185 YNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVT 233
           +NN   T+ T  +  W  +GD    + DG      R  +++K  G  V+
Sbjct: 371 WNNRAKTRDTF-QGEWTRSGDKYVRNDDGSYTYAGRTDDMLKVSGIYVS 418

Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases. Length = 508

>gnl|CDD|236108 PRK07824, PRK07824, O-succinylbenzoic acid--CoA ligase; Provisional

 Score = 41.6 bits (98), Expect = 2e-04
 Identities = 61/227 (26%), Positives = 86/227 (37%), Gaps = 49/227 (21%)

Query: 17  LCVLPLFHVFGLAVITCGQLQKGS---CIILMAKFDLEMFLRAIEK----HRVTHIWVVP 69
           L  LP  H+ GL V+    +  GS    + + A FD     RA+ +     R T +    
Sbjct: 78  LLALPAHHIAGLQVLV-RSVIAGSEPVELDVSAGFDPTALPRAVAELGGGRRYTSL---V 133

Query: 70  PLILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVGYGLTETSGI 129
           P+ LA A         L+ L  V  G  P    +++  A       V++  YG++ETSG 
Sbjct: 134 PMQLAKALDDPAATAALAELDAVLVGGGPAPAPVLDAAAA--AGINVVRT-YGMSETSG- 189

Query: 130 ATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQL----GEIWLRGPNMMRGYY 185
                           G +  GV           PL   ++    G I L GP + +GY 
Sbjct: 190 ----------------GCVYDGV-----------PLDGVRVRVEDGRIALGGPTLAKGYR 222

Query: 186 NNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 232
           N          + GW  T DLG  D DG L V+ R  + I   G  V
Sbjct: 223 NPVDPDPFA--EPGWFRTDDLGALD-DGVLTVLGRADDAISTGGLTV 266

Length = 358

>gnl|CDD|224458 COG1541, PaaK, Coenzyme F390 synthetase [Coenzyme metabolism]

 Score = 41.2 bits (97), Expect = 3e-04
 Identities = 27/98 (27%), Positives = 42/98 (42%), Gaps = 6/98 (6%)

Query: 39  GSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKH---GLVKKFDLSSLKLVGSG 95
           G+ +I ++  + E  L  ++  + T I   P  +L LA+      +    L SLK    G
Sbjct: 160 GATVIPISGGNTERQLELMKDFKPTVIAATPSYLLYLAEEAEEEGIDPDKL-SLKKGIFG 218

Query: 96  AAPLGKELMEECAKNVPSATVIQVGYGLTETSGIATME 133
           A P  +E M +  +N        + YGLTE  G    E
Sbjct: 219 AEPWSEE-MRKVIENRFGCKAFDI-YGLTEGFGPGAGE 254

Length = 438

>gnl|CDD|180374 PRK06060, PRK06060, acyl-CoA synthetase; Validated

 Score = 40.4 bits (94), Expect = 5e-04
 Identities = 29/94 (30%), Positives = 46/94 (48%), Gaps = 6/94 (6%)

Query: 120 GYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPN 179
           G G TE  G   + N     R +G+ G + P  E  +V+ D     P  + G++W+RGP 
Sbjct: 292 GIGSTEV-GQTFVSNRVDEWR-LGTLGRVLPPYEIRVVAPDGTTAGPGVE-GDLWVRGPA 348

Query: 180 MMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDG 213
           + +GY+N   +    +  +GW+ T D    D DG
Sbjct: 349 IAKGYWNRPDS---PVANEGWLDTRDRVCIDSDG 379

Length = 705

>gnl|CDD|236231 PRK08308, PRK08308, acyl-CoA synthetase; Validated

 Score = 39.6 bits (93), Expect = 7e-04
 Identities = 11/32 (34%), Positives = 17/32 (53%)

Query: 201 VHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 232
           + T DLGY    G L+ + R+ ++I   G  V
Sbjct: 293 IFTKDLGYKSERGTLHFMGRMDDVINVSGLNV 324

Length = 414

>gnl|CDD|236217 PRK08279, PRK08279, long-chain-acyl-CoA synthetase; Validated

 Score = 39.1 bits (92), Expect = 0.001
 Identities = 16/51 (31%), Positives = 22/51 (43%)

Query: 15  VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHI 65
           V  C LPL+H  G  V     L  G+ + L  KF    F   + ++R T  
Sbjct: 242 VLYCCLPLYHNTGGTVAWSSVLAAGATLALRRKFSASRFWDDVRRYRATAF 292

Length = 600

>gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional

 Score = 39.2 bits (91), Expect = 0.002
 Identities = 37/154 (24%), Positives = 63/154 (40%), Gaps = 11/154 (7%)

Query: 85   DLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVGYGLTETSGIATMENSFAGSRNIGS 144
              +SLK +  G   L  +L ++    +P   +    YG TE +   T        ++   
Sbjct: 3309 RCTSLKRIVCGGEALPADLQQQVFAGLPLYNL----YGPTEATITVTHWQCVEEGKDAVP 3364

Query: 145  AGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQATKLTIDKKGWV--- 201
             G         I+    + P+P   LGE++L G  + RGY+N    T        +V   
Sbjct: 3365 IGRPIANRACYILDGSLE-PVPVGALGELYLGGEGLARGYHNRPGLTAERFVPDPFVPGE 3423

Query: 202  ---HTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 232
                TGDL  +  DG +  + R+   +K +GF++
Sbjct: 3424 RLYRTGDLARYRADGVIEYIGRVDHQVKIRGFRI 3457

Length = 5163

>gnl|CDD|220921 pfam10978, DUF2785, Protein of unknown function (DUF2785)

 Score = 37.6 bits (88), Expect = 0.002
 Identities = 20/85 (23%), Positives = 35/85 (41%), Gaps = 16/85 (18%)

Query: 154 ALIVSVDTQKP-LPPNQLGEIWLRGPNMMRGYYNNEQATKLTIDKKGWVH----TGDL-- 206
           ALI+  D + P L P +  E++      +  Y   E  T+  +++KGW H      DL  
Sbjct: 24  ALILYADREHPFLTPQEREELF----EQLLTYLALEHDTRGYVEEKGWAHAIAHGADLLD 79

Query: 207 -----GYFDGDGQLYVVDRIKELIK 226
                       ++ ++  +KE  K
Sbjct: 80  ELVCHPKLPRADKILLLAALKEKYK 104

Some members in this family are annotated as hypothetical membrane spanning proteins however this cannot be confirmed. The family has no known function. Length = 175

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	236
KOG1176	537	consensus Acyl-CoA synthetase [Lipid transport and	100.0
COG0365	528	Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid l	100.0
COG0318	534	CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid l	100.0
KOG1177	596	consensus Long chain fatty acid acyl-CoA ligase [L	100.0
PRK06334	539	long chain fatty acid--[acyl-carrier-protein] liga	100.0
PLN02574	560	4-coumarate--CoA ligase-like	100.0
PLN02654	666	acetate-CoA ligase	100.0
PLN02246	537	4-coumarate--CoA ligase	100.0
PF00501	417	AMP-binding: AMP-binding enzyme; InterPro: IPR0008	100.0
TIGR02188	625	Ac_CoA_lig_AcsA acetate--CoA ligase. This model de	100.0
PLN02614	666	long-chain acyl-CoA synthetase	100.0
PRK07788	549	acyl-CoA synthetase; Validated	100.0
PLN02860	563	o-succinylbenzoate-CoA ligase	100.0
TIGR02316	628	propion_prpE propionate--CoA ligase. This family c	100.0
PTZ00342	746	acyl-CoA synthetase; Provisional	100.0
PTZ00237	647	acetyl-CoA synthetase; Provisional	100.0
PRK13295	547	cyclohexanecarboxylate-CoA ligase; Reviewed	100.0
PRK00174	637	acetyl-CoA synthetase; Provisional	100.0
PRK08314	546	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK06839	496	acyl-CoA synthetase; Validated	100.0
PLN02736	651	long-chain acyl-CoA synthetase	100.0
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	100.0
PRK07529	632	AMP-binding domain protein; Validated	100.0
PRK06145	497	acyl-CoA synthetase; Validated	100.0
PRK07656	513	long-chain-fatty-acid--CoA ligase; Validated	100.0
PLN03051	499	acyl-activating enzyme; Provisional	100.0
TIGR03208	538	cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase.	100.0
PRK08315	559	AMP-binding domain protein; Validated	100.0
PRK08316	523	acyl-CoA synthetase; Validated	100.0
PRK04319	570	acetyl-CoA synthetase; Provisional	100.0
TIGR02275	527	DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase. Prot	100.0
PRK12583	558	acyl-CoA synthetase; Provisional	100.0
PLN02861	660	long-chain-fatty-acid-CoA ligase	100.0
PLN02330	546	4-coumarate--CoA ligase-like 1	100.0
PRK07514	504	malonyl-CoA synthase; Validated	100.0
PRK05677	562	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK10524	629	prpE propionyl-CoA synthetase; Provisional	100.0
PRK07638	487	acyl-CoA synthetase; Validated	100.0
PRK05605	573	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK06060	705	acyl-CoA synthetase; Validated	100.0
PRK03640	483	O-succinylbenzoic acid--CoA ligase; Provisional	100.0
PRK07787	471	acyl-CoA synthetase; Validated	100.0
PRK13382	537	acyl-CoA synthetase; Provisional	100.0
COG1022	613	FAA1 Long-chain acyl-CoA synthetases (AMP-forming)	100.0
PRK06087	547	short chain acyl-CoA synthetase; Reviewed	100.0
PRK09274	552	peptide synthase; Provisional	100.0
PRK09088	488	acyl-CoA synthetase; Validated	100.0
PRK06710	563	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK12492	562	long-chain-fatty-acid--CoA ligase; Provisional	100.0
PRK06188	524	acyl-CoA synthetase; Validated	100.0
PRK10946	536	entE enterobactin synthase subunit E; Provisional	100.0
PRK07786	542	long-chain-fatty-acid--CoA ligase; Validated	100.0
TIGR01733	408	AA-adenyl-dom amino acid adenylation domain. This	100.0
KOG1175	626	consensus Acyl-CoA synthetase [Lipid transport and	100.0
PRK05852	534	acyl-CoA synthetase; Validated	100.0
PRK12467	3956	peptide synthase; Provisional	100.0
PRK06187	521	long-chain-fatty-acid--CoA ligase; Validated	100.0
TIGR03443	1389	alpha_am_amid L-aminoadipate-semialdehyde dehydrog	100.0
PRK07769	631	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK13383	516	acyl-CoA synthetase; Provisional	100.0
PRK08043	718	bifunctional acyl-[acyl carrier protein] synthetas	100.0
PRK12316	5163	peptide synthase; Provisional	100.0
PRK13390	501	acyl-CoA synthetase; Provisional	100.0
TIGR02262	508	benz_CoA_lig benzoate-CoA ligase family. Character	100.0
PRK06164	540	acyl-CoA synthetase; Validated	100.0
PRK05851	525	long-chain-fatty-acid--[acyl-carrier-protein] liga	100.0
PRK10252	1296	entF enterobactin synthase subunit F; Provisional	100.0
PRK06155	542	crotonobetaine/carnitine-CoA ligase; Provisional	100.0
PRK05857	540	acyl-CoA synthetase; Validated	100.0
PRK12406	509	long-chain-fatty-acid--CoA ligase; Provisional	100.0
PRK07470	528	acyl-CoA synthetase; Validated	100.0
TIGR03098	515	ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosor	100.0
TIGR03205	541	pimA dicarboxylate--CoA ligase PimA. PimA, a membe	100.0
PTZ00216	700	acyl-CoA synthetase; Provisional	100.0
PLN02387	696	long-chain-fatty-acid-CoA ligase family protein	100.0
PRK07059	557	Long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK06178	567	acyl-CoA synthetase; Validated	100.0
COG1021	542	EntE Peptide arylation enzymes [Secondary metaboli	100.0
PRK12467	3956	peptide synthase; Provisional	100.0
PRK08008	517	caiC putative crotonobetaine/carnitine-CoA ligase;	100.0
PRK13391	511	acyl-CoA synthetase; Provisional	100.0
PRK07008	539	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK12316	5163	peptide synthase; Provisional	100.0
PRK12476	612	putative fatty-acid--CoA ligase; Provisional	100.0
TIGR01734	502	D-ala-DACP-lig D-alanine--poly(phosphoribitol) lig	100.0
PRK05691	4334	peptide synthase; Validated	100.0
PLN02430	660	long-chain-fatty-acid-CoA ligase	100.0
PRK08180	614	feruloyl-CoA synthase; Reviewed	100.0
PRK08276	502	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK08751	560	putative long-chain fatty acyl CoA ligase; Provisi	100.0
PRK03584	655	acetoacetyl-CoA synthetase; Provisional	100.0
KOG1256	691	consensus Long-chain acyl-CoA synthetases (AMP-for	100.0
PRK07867	529	acyl-CoA synthetase; Validated	100.0
PLN03052	728	acetate--CoA ligase; Provisional	100.0
PRK12582	624	acyl-CoA synthetase; Provisional	100.0
PRK08974	560	long-chain-fatty-acid--CoA ligase; Validated	100.0
TIGR01217	652	ac_ac_CoA_syn acetoacetyl-CoA synthase. This enzym	100.0
PRK04813	503	D-alanine--poly(phosphoribitol) ligase subunit 1;	100.0
PRK07868	994	acyl-CoA synthetase; Validated	100.0
PRK05691	4334	peptide synthase; Validated	100.0
PRK13388	540	acyl-CoA synthetase; Provisional	100.0
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	100.0
PRK05620	576	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK06018	542	putative acyl-CoA synthetase; Provisional	100.0
PLN03102	579	acyl-activating enzyme; Provisional	100.0
PLN02479	567	acetate-CoA ligase	100.0
PRK07445	452	O-succinylbenzoic acid--CoA ligase; Reviewed	100.0
TIGR01923	436	menE O-succinylbenzoate-CoA ligase. This model rep	100.0
PRK08279	600	long-chain-acyl-CoA synthetase; Validated	100.0
PRK05850	578	acyl-CoA synthetase; Validated	100.0
PRK09192	579	acyl-CoA synthetase; Validated	99.97
PRK07768	545	long-chain-fatty-acid--CoA ligase; Validated	99.97
PRK08162	545	acyl-CoA synthetase; Validated	99.97
PRK07798	533	acyl-CoA synthetase; Validated	99.97
PRK08308	414	acyl-CoA synthetase; Validated	99.97
PRK09029	458	O-succinylbenzoic acid--CoA ligase; Provisional	99.97
PRK07824	358	O-succinylbenzoic acid--CoA ligase; Provisional	99.96
TIGR02155	422	PA_CoA_ligase phenylacetate-CoA ligase. Phenylacet	99.96
KOG1180	678	consensus Acyl-CoA synthetase [Lipid transport and	99.96
KOG1179	649	consensus Very long-chain acyl-CoA synthetase/fatt	99.95
TIGR02372	386	4_coum_CoA_lig 4-coumarate--CoA ligase, photoactiv	99.92
TIGR03335	445	F390_ftsA coenzyme F390 synthetase. This enzyme, c	99.91
COG1020	642	EntF Non-ribosomal peptide synthetase modules and	99.91
COG1541	438	PaaK Coenzyme F390 synthetase [Coenzyme metabolism	99.88
PTZ00297	1452	pantothenate kinase; Provisional	99.67
TIGR02304	430	aden_form_hyp probable adenylate-forming enzyme. M	99.55
KOG3628	1363	consensus Predicted AMP-binding protein [General f	99.14
KOG1178	1032	consensus Non-ribosomal peptide synthetase/alpha-a	99.03
PF04443	365	LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR	98.76
KOG3628	1363	consensus Predicted AMP-binding protein [General f	98.73
TIGR03089	227	conserved hypothetical protein TIGR03089. This pro	98.6
PRK09188	365	serine/threonine protein kinase; Provisional	98.19
PF03321	528	GH3: GH3 auxin-responsive promoter; InterPro: IPR0	98.06
PLN02620	612	indole-3-acetic acid-amido synthetase	97.97
PLN02247	606	indole-3-acetic acid-amido synthetase	97.83
PLN02249	597	indole-3-acetic acid-amido synthetase	97.76
PLN02736	651	long-chain acyl-CoA synthetase	82.08

>KOG1176 consensus Acyl-CoA synthetase [Lipid transport and metabolism]

Probab=100.00  E-value=2.4e-44  Score=302.85  Aligned_cols=226  Identities=50%  Similarity=0.829  Sum_probs=208.1

Q ss_pred             ccCCCCcEEEEecChhhHHhHHHHHHHHhhcCcEEEEcCCCCHHHHHHHHHhcCceEEEeChHHHHHHHhcCCcCCCCCC
Q 026609            8 TAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLS   87 (236)
Q Consensus         8 ~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~   87 (236)
                      ......|+.++.+|++|.+|+...+.+.+..|++++....|++..+++.+++|++|++.++|..+..|++.+.....+++
T Consensus       220 ~~~~~~~v~l~~lPl~H~~Gl~~~~~~~~~~~~~ii~~~~f~~~~~~~~i~kykvt~~~~vP~~~~~l~~~p~~~~~~l~  299 (537)
T KOG1176|consen  220 WELTSDDVYLCTLPLFHIYGLITLLLSLLAGGTTIICLRKFDAELFLDLIEKYKVTHLFLVPPVLNMLAKSPIVKKYDLS  299 (537)
T ss_pred             ccCCCCceEEEechHHHHhHHHHHHHHHHhCCceEEECCCCCHHHHHHHHHHhCEEEEEcChHHHHHHhcCCccCcccCC
Confidence            34555899999999999999977777788888888888889999999999999999999999999999999877788999


Q ss_pred             CceEEeecCCCCCHHHHHHHHHhCCCCceeeccccccccccccccccCCCCCCCCCCccccCCCcEEEEEeCCCCCCCCC
Q 026609           88 SLKLVGSGAAPLGKELMEECAKNVPSATVIQVGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPP  167 (236)
Q Consensus        88 ~lr~i~~~G~~~~~~~~~~~~~~~~~~~v~~~~YG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~  167 (236)
                      ++|.+.++|+++++++.+.+.+.+|...+.+ .||+||++.+++.+..... .+++++|+++++++..+.+ +.|+.+++
T Consensus       300 sl~~v~~gga~~~~~~~~~~~~~l~~~~v~q-~YGmTE~~~~~~~~~~~~e-~k~~svG~~~~g~~~~v~~-e~g~~l~~  376 (537)
T KOG1176|consen  300 SLRSVLSGGAPLSPATLEKVKERLPNVTVIQ-GYGMTEAGGLITSNDWGPE-RKPGSVGRLLPGVRVKVLD-ETGVSLGP  376 (537)
T ss_pred             ccEEEEecCCCCCHHHHHHHHHhCCCceEEE-eeccccccCceeecCCCcc-CcccccCccccceEEEeeC-CCCCCCCC
Confidence            9999999999999999999999999888888 9999999977776555433 6889999999998888887 79999999


Q ss_pred             CCceEEEEecCccchhhcCCcccccccccCCCeEecCceEEEcCCCcEEEEcccCCceeeccEEeecCC
Q 026609          168 NQLGEIWLRGPNMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSNW  236 (236)
Q Consensus       168 g~~Gel~v~~~~~~~~~~~~~~~~~~~~~~~~~~~TgD~~~~~~~g~~~~~GR~~d~i~~~G~~i~p~~  236 (236)
                      ++.||||++|+.++.||++||+.++..++.+|||+|||+|++|+||++++.+|.+|+||.+|++|+|.|
T Consensus       377 ~~~GEI~vrg~~imkGY~~NpeaT~~~~~~~GW~~TGDiGy~D~DG~l~IvdR~KdlIk~~G~qv~P~E  445 (537)
T KOG1176|consen  377 NQTGEICVRGPQVMKGYLKNPEATKEAFDDDGWFHTGDLGYFDEDGYLYIVDRSKDLIKYGGEQVSPAE  445 (537)
T ss_pred             CCceEEEEECcccchhhcCChHHHHhhcccCCccccCceEEEcCCCeEEEecchhhheeeCCEEeCHHH
Confidence            999999999999999999999999999977799999999999999999999999999999999999986

>COG0365 Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism]

Probab=100.00  E-value=4.7e-42  Score=287.72  Aligned_cols=223  Identities=28%  Similarity=0.357  Sum_probs=200.7

Q ss_pred             eeccCCCCcEEEEecChhhHHhHHHHHHHHhhcCcEEEEcCC--C-CHHHHHHHHHhcCceEEEeChHHHHHHHhcCCcC
Q 026609            6 QETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK--F-DLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVK   82 (236)
Q Consensus         6 ~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~--~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~   82 (236)
                      ..+++.++|+++++.++.|+.|+...++++|..|+++++.+.  + ++++++++++++++|.++.+|+.++.|++....+
T Consensus       206 ~~~~~~~~Dv~w~~ad~GW~~g~~~~v~~pL~~Gat~~~~eg~p~~~~~~~~~~ie~~~vt~~~tsPT~~R~l~~~g~~~  285 (528)
T COG0365         206 FHGDLLPGDRFWNSSDPGWIYGLWYSVFSPLASGATTVLYDGRPFYSPERLWEALEKYKVTIFGTSPTFLRRLMKLGLGE  285 (528)
T ss_pred             HhhCCCCCCEEEeCCCchhhhCchHHHHHHHhcCCeEEEeCCCCCCCHHHHHHHHHHhCCceEeeCHHHHHHHHhcCCcc
Confidence            356778999999999999999999999999999999999863  3 3899999999999999999999999999987656


Q ss_pred             CCCCCCceEEeecCCCCCHHHHHHHHHhCCCCceeeccccccccccccccccCCCCCCCCCCccccCCCcEEEEEeCCCC
Q 026609           83 KFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQ  162 (236)
Q Consensus        83 ~~~l~~lr~i~~~G~~~~~~~~~~~~~~~~~~~v~~~~YG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~  162 (236)
                      ..++++||.+.++||+++++.++++.+.++ +.+.+ .||+||+|.+.....+   ..+++..|.|+||+++.++|++ |
T Consensus       286 ~~dlssLr~~~SaGEPLnpe~~~w~~~~~g-~~i~d-~~gqTEtg~~~~~~~~---~~~~g~~g~p~pG~~~~vvdd~-g  359 (528)
T COG0365         286 PYDLSSLRVLGSAGEPLNPEAFEWFYSALG-VWILD-IYGQTETGMGFIAGRP---PVKNGSSGLPLPGYAVRRVDDE-G  359 (528)
T ss_pred             cccchhheeeeccCCCCCHHHHHHHHHHhC-CCEec-cccccccCccccCCCC---CcCCCCCCCCCCCceeEEECCC-C
Confidence            778999999999999999999999999998 99999 9999999955554333   3344555999999999999965 9


Q ss_pred             CCCCCCCceEEEEecC--ccchhhcCCcccccccccCCCeEecCceEEEcCCCcEEEEcccCCceeeccEEeecCC
Q 026609          163 KPLPPNQLGEIWLRGP--NMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSNW  236 (236)
Q Consensus       163 ~~~~~g~~Gel~v~~~--~~~~~~~~~~~~~~~~~~~~~~~~TgD~~~~~~~g~~~~~GR~~d~i~~~G~~i~p~~  236 (236)
                      ++++.|+ |+|+++.+  +++.+||+|++...+.+... ||.|||.+++|+||+++|.||.||+||+.|++|.|.|
T Consensus       360 ~~~~~~~-G~Lvi~~~~p~~~~~~w~d~er~~~~y~~~-~y~tGD~~~~DedGy~~i~GR~DDvI~vsG~Rig~~E  433 (528)
T COG0365         360 NPVPPGV-GELVVRLPWPGMALTYWNDPERYKEAYFGR-WYRTGDWAERDEDGYFWLHGRSDDVIKVSGKRIGPLE  433 (528)
T ss_pred             CcCCCCc-eEEEEeCCCchhhhhhhCCHHHHHHHHhhc-eeecCceeEEccCCCEEEEeeccceEeccCeeccHHH
Confidence            9999999 99999986  88999999999998888444 9999999999999999999999999999999999875

>COG0318 CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]

Probab=100.00  E-value=2.8e-41  Score=290.23  Aligned_cols=229  Identities=42%  Similarity=0.650  Sum_probs=203.7

Q ss_pred             eecc--CCCCcEEEEecChhhHHhHHHHHHHHhhcCcEEEEcC--CCCHHHHHHHHHhcCceEEEeChHHHHHHHhcCCc
Q 026609            6 QETA--GELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA--KFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLV   81 (236)
Q Consensus         6 ~~~~--~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~--~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~   81 (236)
                      +.++  +.++|++++++|+||.+|+...++.+++.|+++++.+  .|++..++..+.++++|++.++|+++..|+.+...
T Consensus       205 ~~~~~~~~~~d~~l~~lPl~H~~Gl~~~~~~~~~~G~~~v~~~~~~f~~~~~~~~i~~~~~t~~~~vPt~~~~ll~~~~~  284 (534)
T COG0318         205 AALGGGLTPDDVVLSWLPLFHIFGLIVGLLAPLLGGGTLVLLSPEPFDPEEVLWLIEKYKVTVLSGVPTFLRELLDNPEK  284 (534)
T ss_pred             HHhcccCCCCceEEEecChHHHHHHHHHHHHHHHcCCEEEeCCCCCcCHHHHHHHHHHhcceEEecchHHHHHHHhCCcc
Confidence            4455  7889999999999999999878888899999999988  59999999999999999999999999999999877


Q ss_pred             CCCCCCC-ceEEeecCCCCCHHHHHHHHHhCCCCceeeccccccccccccccccCCCCCCCCCCccccCCCcEEEEEeCC
Q 026609           82 KKFDLSS-LKLVGSGAAPLGKELMEECAKNVPSATVIQVGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVD  160 (236)
Q Consensus        82 ~~~~l~~-lr~i~~~G~~~~~~~~~~~~~~~~~~~v~~~~YG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~  160 (236)
                      ...++.. +|.++.||++++++++++|++.|+...+.. .||+||++..++...........+..|+|+|+++++++|++
T Consensus       285 ~~~~~~~~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~-~YG~TE~~~~~~~~~~~~~~~~~~~~G~~~pg~~v~Ivd~~  363 (534)
T COG0318         285 DDDDLSSSLRLVLSGGAPLPPELLERFEERFGPIAILE-GYGLTETSPVVTINPPDDLLAKPGSVGRPLPGVEVRIVDPD  363 (534)
T ss_pred             CccccccceEEEEecCCcCCHHHHHHHHHHhCCCceEE-eecccccCceeecCCCchhhhcCCcccccCCCcEEEEEeCC
Confidence            7666665 999999999999999999999998567888 99999999777665443201345667999999999999977


Q ss_pred             CCCCCCCCCceEEEEecCccchhhcCCcccccccccCCCeEecCceEEEcCCCcEEEEcccCCceeeccEEeecCC
Q 026609          161 TQKPLPPNQLGEIWLRGPNMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSNW  236 (236)
Q Consensus       161 ~~~~~~~g~~Gel~v~~~~~~~~~~~~~~~~~~~~~~~~~~~TgD~~~~~~~g~~~~~GR~~d~i~~~G~~i~p~~  236 (236)
                      +++++| |+.|||+|+||.++.+||++++.+...|..+|||+|||++++|++|+++|.||.+|+|+.+|+||+|+|
T Consensus       364 ~~~~~p-g~vGei~irgp~v~~GY~~~pe~t~~~f~~~gW~~TGDlg~~d~~G~l~i~gR~kd~I~~gG~ni~p~e  438 (534)
T COG0318         364 GGEVLP-GEVGEIWVRGPNVMKGYWNRPEATAEAFDEDGWLRTGDLGYVDEDGYLYIVGRLKDLIISGGENIYPEE  438 (534)
T ss_pred             CCccCC-CCceEEEEECchhhhhhcCChHHHHHhhccCCeeeecceEEEcCCccEEEEeccceEEEeCCeEECHHH
Confidence            776777 999999999999999999999999987755699999999999999999999999999999999999975

>KOG1177 consensus Long chain fatty acid acyl-CoA ligase [Lipid transport and metabolism]

Probab=100.00  E-value=8.5e-42  Score=273.27  Aligned_cols=228  Identities=30%  Similarity=0.425  Sum_probs=208.6

Q ss_pred             eccCCCCcEEEEecChhhHHhHHHHHHHHhhcCcEEEEc-CCCCHHHHHHHHHhcCceEEEeChHHHHHHHhcCCcCCCC
Q 026609            7 ETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILM-AKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFD   85 (236)
Q Consensus         7 ~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~-~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~   85 (236)
                      ..++.++++++...|++|++|.....++++..|+|+|++ +.|++...+++|+++++|.++++|+++..|++.+.....+
T Consensus       269 r~g~~e~~~i~~~~Pl~H~~G~~~~~ma~l~~gat~Vfp~~~f~~k~alqai~~ekcT~l~gtPtM~~Dlln~~~~~~~~  348 (596)
T KOG1177|consen  269 RAGYNEKHRICIPNPLYHCFGCVLGVMAALMHGATIVFPAPSFDPKDALQAISNEKCTTLYGTPTMFVDLLNIPQKQQVD  348 (596)
T ss_pred             HhCcCcceEEEecCchHHHHHHHHHHHHHHHhCcEEEeeCCCCChHHHHHHHHhhceEEEecChHHHHHHhcchhhccCc
Confidence            467778889999999999999889999999999999996 4799999999999999999999999999999999999999


Q ss_pred             CCCceEEeecCCCCCHHHHHHHHHhCCCCceeeccccccccccccccccC-CCCCCCCCCccccCCCcEEEEEeCCCCCC
Q 026609           86 LSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVGYGLTETSGIATMENS-FAGSRNIGSAGALAPGVEALIVSVDTQKP  164 (236)
Q Consensus        86 l~~lr~i~~~G~~~~~~~~~~~~~~~~~~~v~~~~YG~tE~g~~~~~~~~-~~~~~~~~~~g~p~~~~~~~~~~~~~~~~  164 (236)
                      ++++|.++++|+++++++++.+..... ...+...||+||++++.+.... +.......++|...++.+..++| +.|..
T Consensus       349 ~s~lr~~vigGa~~s~eLlk~iv~~~~-m~~i~v~YG~TEts~v~~~~~~~D~~~~~~ksVG~~m~h~Ea~iv~-~~g~~  426 (596)
T KOG1177|consen  349 LSSLRKGVIGGAPVSPELLKLIVNQMN-MKDIAVAYGLTETSPVLFMSLLGDPPEERIKSVGHLMDHYEAAIVD-KDGSE  426 (596)
T ss_pred             hhhhhhheeCCCCCCHHHHHHHHHhhC-ceeeEEEeeccccCcceeeecCCCCHHHHHhhhhhccccccccccc-CCCCc
Confidence            999999999999999999999998764 5545559999999987776433 22345567899999999999999 78999


Q ss_pred             CCCCCceEEEEecCccchhhcCCcccccccccCCCeEecCceEEEcCCCcEEEEcccCCceeeccEEeecCC
Q 026609          165 LPPNQLGEIWLRGPNMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSNW  236 (236)
Q Consensus       165 ~~~g~~Gel~v~~~~~~~~~~~~~~~~~~~~~~~~~~~TgD~~~~~~~g~~~~~GR~~d~i~~~G~~i~p~~  236 (236)
                      +|-|..|||+++|.+.+.+||++++.+.+....+.||+|||.+.+|++|.++++||.+|+|+.+|++|+|.|
T Consensus       427 v~~~~~Gel~iRGY~tMl~Ywg~~~kT~eti~~drW~~TGDi~~m~enG~i~iVGRskdmI~rGGENVyP~E  498 (596)
T KOG1177|consen  427 VPLGTKGELLIRGYSTMLGYWGEEEKTKETIGNDRWYDTGDIAVMDENGTIEIVGRSKDMIIRGGENVYPTE  498 (596)
T ss_pred             cccCCCceEEEEechhheeecCCcccchhhcccccceecCceEEEcCCCcEEEEEcccCeEEeCCcccChHH
Confidence            999999999999999999999999999999989999999999999999999999999999999999999986

>PRK06334 long chain fatty acid--[acyl-carrier-protein] ligase; Validated

Probab=100.00  E-value=2.5e-40  Score=285.08  Aligned_cols=229  Identities=25%  Similarity=0.412  Sum_probs=199.6

Q ss_pred             eeccCCCCcEEEEecChhhHHhHHHHHHHHhhcCcEEEEcC-CCCHHHHHHHHHhcCceEEEeChHHHHHHHhcCCcCCC
Q 026609            6 QETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKF   84 (236)
Q Consensus         6 ~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~   84 (236)
                      ..++..++|++++++|++|.+|+...++.++..|+++++.+ .+++..+++.++++++|.+.++|+++..|++.......
T Consensus       217 ~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~vv~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~  296 (539)
T PRK06334        217 KFFSPKEDDVMMSFLPPFHAYGFNSCTLFPLLSGVPVVFAYNPLYPKKIVEMIDEAKVTFLGSTPVFFDYILKTAKKQES  296 (539)
T ss_pred             HhcCCCCCceEEEecchHhhhhhHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHHhCCcEEEecHHHHHHHHHhhhhccc
Confidence            34567889999999999999999777889999999999875 57999999999999999999999999999887655566


Q ss_pred             CCCCceEEeecCCCCCHHHHHHHHHhCCCCceeeccccccccccccccccCCCCCCCCCCccccCCCcEEEEEeCCCCCC
Q 026609           85 DLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKP  164 (236)
Q Consensus        85 ~l~~lr~i~~~G~~~~~~~~~~~~~~~~~~~v~~~~YG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~  164 (236)
                      .++++|.++++|+++++++.+++.+.+++..+.+ .||+||++.++...... .......+|+|+++++++++|++++++
T Consensus       297 ~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~~i~~-~YG~TE~~~~~~~~~~~-~~~~~~~vG~p~~g~~v~i~d~~~~~~  374 (539)
T PRK06334        297 CLPSLRFVVIGGDAFKDSLYQEALKTFPHIQLRQ-GYGTTECSPVITINTVN-SPKHESCVGMPIRGMDVLIVSEETKVP  374 (539)
T ss_pred             ccccccEEEECCccCCHHHHHHHHHHCCCCeEEe-cccccccCceEEeccCC-CCCCCCcCceecCCCEEEEEcCCCCcc
Confidence            7889999999999999999999999997678888 99999998766543222 123345789999999999999777899


Q ss_pred             CCCCCceEEEEecCccchhhcCCcccccccc-cCCCeEecCceEEEcCCCcEEEEcccCCceeeccEEeecCC
Q 026609          165 LPPNQLGEIWLRGPNMMRGYYNNEQATKLTI-DKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSNW  236 (236)
Q Consensus       165 ~~~g~~Gel~v~~~~~~~~~~~~~~~~~~~~-~~~~~~~TgD~~~~~~~g~~~~~GR~~d~i~~~G~~i~p~~  236 (236)
                      +++|+.|||+|+|+.++.||+++++.+.... ..++||+|||+++++++|++++.||.||+||++|++|+|.|
T Consensus       375 ~~~g~~Gel~v~g~~~~~GY~~~~~~~~~~~~~~~~w~~TGD~g~~d~~G~l~~~GR~~d~ik~~G~~v~p~e  447 (539)
T PRK06334        375 VSSGETGLVLTRGTSLFSGYLGEDFGQGFVELGGETWYVTGDLGYVDRHGELFLKGRLSRFVKIGAEMVSLEA  447 (539)
T ss_pred             CCCCceEEEEEecCcccccccCCcccccceeeCCceeEECCCEEEECCCCeEEEEeccCCeEEECCEEECHHH
Confidence            9999999999999999999999987643321 34689999999999999999999999999999999999975

>PLN02574 4-coumarate--CoA ligase-like

Probab=100.00  E-value=4.3e-39  Score=278.70  Aligned_cols=225  Identities=44%  Similarity=0.790  Sum_probs=200.4

Q ss_pred             CCCcEEEEecChhhHHhHHHHHHHHhhcCcEEEEcCCCCHHHHHHHHHhcCceEEEeChHHHHHHHhcCCc-CCCCCCCc
Q 026609           11 ELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLV-KKFDLSSL   89 (236)
Q Consensus        11 ~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~-~~~~l~~l   89 (236)
                      ..+++++..+|++|.+|+...++.++..|+++++.+++++..+++.++++++|.+.++|+++..|.+.... ...+++++
T Consensus       242 ~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~l  321 (560)
T PLN02574        242 GSDNVYLAALPMFHIYGLSLFVVGLLSLGSTIVVMRRFDASDMVKVIDRFKVTHFPVVPPILMALTKKAKGVCGEVLKSL  321 (560)
T ss_pred             CCCcEEEEecchHHHHHHHHHHHHHHhcCCEEEEecCCCHHHHHHHHHHcCCeEEecCCHHHHHHHhCccccccCccccc
Confidence            35689999999999999977788888999999999999999999999999999999999999999887543 34567899


Q ss_pred             eEEeecCCCCCHHHHHHHHHhCCCCceeeccccccccccccccccCCCCCCCCCCccccCCCcEEEEEeCCCCCCCCCCC
Q 026609           90 KLVGSGAAPLGKELMEECAKNVPSATVIQVGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQ  169 (236)
Q Consensus        90 r~i~~~G~~~~~~~~~~~~~~~~~~~v~~~~YG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~g~  169 (236)
                      |.++++|++++++++++|.+.+++..+.+ .||+||++.+...............+|+|.++++++++|++++++++.|+
T Consensus       322 r~~~~gg~~l~~~~~~~~~~~~~~~~v~~-~YG~tE~~~~~~~~~~~~~~~~~~~vG~~~~~~~v~i~d~~~g~~~~~g~  400 (560)
T PLN02574        322 KQVSCGAAPLSGKFIQDFVQTLPHVDFIQ-GYGMTESTAVGTRGFNTEKLSKYSSVGLLAPNMQAKVVDWSTGCLLPPGN  400 (560)
T ss_pred             eEEEEecccCCHHHHHHHHHHCCCCcEEe-cccccccCceeecCCCccccCCCCceeeeCCCcEEEEEeCCCCcCCCCCC
Confidence            99999999999999999999997688998 99999998765432222222456789999999999999988899999999


Q ss_pred             ceEEEEecCccchhhcCCcccccccccCCCeEecCceEEEcCCCcEEEEcccCCceeeccEEeecCC
Q 026609          170 LGEIWLRGPNMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSNW  236 (236)
Q Consensus       170 ~Gel~v~~~~~~~~~~~~~~~~~~~~~~~~~~~TgD~~~~~~~g~~~~~GR~~d~i~~~G~~i~p~~  236 (236)
                      .|||+++|+.++.||+++++.+...+..+|||+|||+++++++|.+++.||+||+||++|++|+|.|
T Consensus       401 ~Gei~v~g~~~~~GY~~~~~~t~~~~~~~g~~~TGDlg~~~~~G~l~i~GR~~d~i~~~G~~v~~~e  467 (560)
T PLN02574        401 CGELWIQGPGVMKGYLNNPKATQSTIDKDGWLRTGDIAYFDEDGYLYIVDRLKEIIKYKGFQIAPAD  467 (560)
T ss_pred             CeEEEEECcchhhhhcCChhHhhhhccCCCCcccceEEEEECCCeEEEEecchhheEECCEEECHHH
Confidence            9999999999999999999999888878999999999999999999999999999999999999975

>PLN02654 acetate-CoA ligase

Probab=100.00  E-value=6.9e-39  Score=281.96  Aligned_cols=229  Identities=21%  Similarity=0.283  Sum_probs=199.0

Q ss_pred             eeccCCCCcEEEEecChhhHHhHHHHHHHHhhcCcEEEEcCC----CCHHHHHHHHHhcCceEEEeChHHHHHHHhcCCc
Q 026609            6 QETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK----FDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLV   81 (236)
Q Consensus         6 ~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~   81 (236)
                      ..++++++|++++.+|++|..|+...++++|+.|+++++.++    +++..+++.++++++|.+.++|++++.|++....
T Consensus       310 ~~~~~~~~d~~~~~~~~~~~~g~~~~~~~~L~~G~tvvl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~  389 (666)
T PLN02654        310 YAFDYKPTDVYWCTADCGWITGHSYVTYGPMLNGATVLVFEGAPNYPDSGRCWDIVDKYKVTIFYTAPTLVRSLMRDGDE  389 (666)
T ss_pred             HhcCCCCCcEEEEcCCchhhhhhHHHHHHHHHcCceEEEECCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhhCcc
Confidence            457788999999999999999987888999999999999863    5799999999999999999999999999886532


Q ss_pred             --CCCCCCCceEEeecCCCCCHHHHHHHHHhCCC--CceeeccccccccccccccccCCCCCCCCCCccccCCCcEEEEE
Q 026609           82 --KKFDLSSLKLVGSGAAPLGKELMEECAKNVPS--ATVIQVGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIV  157 (236)
Q Consensus        82 --~~~~l~~lr~i~~~G~~~~~~~~~~~~~~~~~--~~v~~~~YG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~  157 (236)
                        ...+++++|.++++|+++++++++++.+.++.  ..+.+ .||+||++..............++.+|.|++|++++++
T Consensus       390 ~~~~~~l~~Lr~i~~~Ge~l~~~~~~~~~~~~g~~~~~i~~-~yg~TE~g~~~~~~~~~~~~~~~gs~G~p~~g~~v~i~  468 (666)
T PLN02654        390 YVTRHSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISD-TWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIV  468 (666)
T ss_pred             ccccCChhheeEEEEecCCCCHHHHHHHHHHhCCCCCceec-cccccccCCeeeccCCCCCCCCCCccCCCCCCceEEEE
Confidence              34567899999999999999999999999874  46777 99999998765543322223456789999999999999


Q ss_pred             eCCCCCCCCCCCceEEEEec--CccchhhcCCccccccccc--CCCeEecCceEEEcCCCcEEEEcccCCceeeccEEee
Q 026609          158 SVDTQKPLPPNQLGEIWLRG--PNMMRGYYNNEQATKLTID--KKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVT  233 (236)
Q Consensus       158 ~~~~~~~~~~g~~Gel~v~~--~~~~~~~~~~~~~~~~~~~--~~~~~~TgD~~~~~~~g~~~~~GR~~d~i~~~G~~i~  233 (236)
                      | ++|++++.++.|||++++  |+++.+||++++.+...+.  .+|||+|||++++|+||.++++||+||+||++|++|+
T Consensus       469 d-~~g~~~~~~~~Gel~v~~~~p~~~~gy~~~~~~~~~~~~~~~~g~~~TGD~~~~d~dG~l~i~GR~dd~I~~~G~ri~  547 (666)
T PLN02654        469 D-EKGKEIEGECSGYLCVKKSWPGAFRTLYGDHERYETTYFKPFAGYYFSGDGCSRDKDGYYWLTGRVDDVINVSGHRIG  547 (666)
T ss_pred             C-CCCCCCCCCCceEEEEcCCCchhhhhhcCChHHHHHhhhhcCCCEEEeCceEEECCCCcEEEeeeccCeEEeCCEEEC
Confidence            9 578899999999999998  7899999999988776552  3789999999999999999999999999999999999


Q ss_pred             cCC
Q 026609          234 SNW  236 (236)
Q Consensus       234 p~~  236 (236)
                      |.|
T Consensus       548 p~E  550 (666)
T PLN02654        548 TAE  550 (666)
T ss_pred             HHH
Confidence            975

>PLN02246 4-coumarate--CoA ligase

Probab=100.00  E-value=6.6e-38  Score=270.10  Aligned_cols=229  Identities=46%  Similarity=0.773  Sum_probs=204.9

Q ss_pred             eccCCCCcEEEEecChhhHHhHHHHHHHHhhcCcEEEEcCCCCHHHHHHHHHhcCceEEEeChHHHHHHHhcCCcCCCCC
Q 026609            7 ETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDL   86 (236)
Q Consensus         7 ~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l   86 (236)
                      .+++.++|++++.+|++|.+++...++.++..|+++++.+.+++..+++.++++++|.+.++|+++..|++........+
T Consensus       218 ~~~~~~~d~~l~~~pl~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~  297 (537)
T PLN02246        218 NLYFHSDDVILCVLPMFHIYSLNSVLLCGLRVGAAILIMPKFEIGALLELIQRHKVTIAPFVPPIVLAIAKSPVVEKYDL  297 (537)
T ss_pred             ccCCCCCcEEEEeechHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHHHHHHHHhCceEEEcchHHHHHHhcCccccccCc
Confidence            46678899999999999999997778899999999999999999999999999999999999999999988766556678


Q ss_pred             CCceEEeecCCCCCHHHHHHHHHhCCCCceeeccccccccccccccccC---CCCCCCCCCccccCCCcEEEEEeCCCCC
Q 026609           87 SSLKLVGSGAAPLGKELMEECAKNVPSATVIQVGYGLTETSGIATMENS---FAGSRNIGSAGALAPGVEALIVSVDTQK  163 (236)
Q Consensus        87 ~~lr~i~~~G~~~~~~~~~~~~~~~~~~~v~~~~YG~tE~g~~~~~~~~---~~~~~~~~~~g~p~~~~~~~~~~~~~~~  163 (236)
                      +++|.++++|+++++++.+.+.+.+++..+.+ .||+||++.++.....   ......++.+|+|+++++++++|+++++
T Consensus       298 ~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~-~YG~tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~  376 (537)
T PLN02246        298 SSIRMVLSGAAPLGKELEDAFRAKLPNAVLGQ-GYGMTEAGPVLAMCLAFAKEPFPVKSGSCGTVVRNAELKIVDPETGA  376 (537)
T ss_pred             cceeEEEEecCcCCHHHHHHHHHHcCCCeEec-cccccccCcccccccccCCCCccccCCccccccCCcEEEEecCCCCC
Confidence            89999999999999999999999998677888 9999999876543211   1112345678999999999999977899


Q ss_pred             CCCCCCceEEEEecCccchhhcCCcccccccccCCCeEecCceEEEcCCCcEEEEcccCCceeeccEEeecCC
Q 026609          164 PLPPNQLGEIWLRGPNMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSNW  236 (236)
Q Consensus       164 ~~~~g~~Gel~v~~~~~~~~~~~~~~~~~~~~~~~~~~~TgD~~~~~~~g~~~~~GR~~d~i~~~G~~i~p~~  236 (236)
                      +++.|+.|||+++|+.++.||+++++.+...+..++||+|||+++++++|.+++.||.||+||++|++|+|.|
T Consensus       377 ~~~~g~~Gel~v~g~~~~~GY~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~GR~dd~i~~~G~~i~~~e  449 (537)
T PLN02246        377 SLPRNQPGEICIRGPQIMKGYLNDPEATANTIDKDGWLHTGDIGYIDDDDELFIVDRLKELIKYKGFQVAPAE  449 (537)
T ss_pred             cCCCCCceEEEEECCchhccccCCchhhhhcccCCCCeeecceEEEeCCCeEEEEecccceEEECCEEECcHH
Confidence            9999999999999999999999999999888877899999999999999999999999999999999999964

>PF00501 AMP-binding: AMP-binding enzyme; InterPro: IPR000873 A number of prokaryotic and eukaryotic enzymes, which appear to act via an ATP-dependent covalent binding of AMP to their substrate, share a region of sequence similarity [, , ]

Probab=100.00  E-value=9.5e-39  Score=267.17  Aligned_cols=214  Identities=40%  Similarity=0.630  Sum_probs=187.1

Q ss_pred             cEEEEecChhhHHhHHHHHHHHhhcCcEEEEcCCCC---HHHHHHHHHhcCceEEEeChHHHHHHHhcCCcC----CCCC
Q 026609           14 YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFD---LEMFLRAIEKHRVTHIWVVPPLILALAKHGLVK----KFDL   86 (236)
Q Consensus        14 d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~---~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~----~~~l   86 (236)
                      |++++++|++|.+|+...++.+++.|+++++.+...   ++.+++.++++++|+++++|++++.|++..+..    ..++
T Consensus       197 d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~~~~~~~~~~l  276 (417)
T PF00501_consen  197 DRILSFLPLSHIFGLISALLAALFSGATLVLPSPFDLFDPESLLELISRYKPTILFAVPSMLEALLQSPEEKTKISKKDL  276 (417)
T ss_dssp             TEEEESS-TTSHHHHHHHHHHHHHCTSEEEEESSHHHHHHHHHHHHHHHHTESEEEEEHHHHHHHHHHHHTTHHGTTTTG
T ss_pred             ceEEeeccccccccccccccccccccccccccccccccccccchhccccccccccccccccccccccccccccccccccc
Confidence            599999999999999889999999999999998654   467899999999999999999999999843222    3578


Q ss_pred             CCceEEeecCCCCCHHHHHHHHHhCCCCceeeccccccccccccccccCCCCCCCCCCccccCCCcEEEEEeCCCCCCCC
Q 026609           87 SSLKLVGSGAAPLGKELMEECAKNVPSATVIQVGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLP  166 (236)
Q Consensus        87 ~~lr~i~~~G~~~~~~~~~~~~~~~~~~~v~~~~YG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~  166 (236)
                      +++|.++++|+++++++.+++++.++...+.+ .||+||++.+++.........+.+.+|.|+++++++++|++++++++
T Consensus       277 ~~lr~v~~~G~~l~~~~~~~~~~~~~~~~i~~-~YG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~ivd~~~~~~~~  355 (417)
T PF00501_consen  277 SSLRTVISGGEPLPPDLLRRLRKAFGNAPIIN-LYGSTETGSIATIRPPEDDIEKPGSVGKPLPGVEVKIVDPNTGEPLP  355 (417)
T ss_dssp             TT-SEEEEESST-CHHHHHHHHHHHTTSEEEE-EEEEGGGSSEEEEEETTTHHSSTTSEBEESTTEEEEEECTTTSSBES
T ss_pred             ccccccccccccCChhhcccccccccccccee-cccccccceeeeccccccccccccccccccccccccccccccccccc
Confidence            89999999999999999999999998557888 99999999998754322223466789999999999999987799999


Q ss_pred             CCCceEEEEecCccchhhcCCcccccccccCCCeEecCceEEEcCCCcEEEEcccCCceeec
Q 026609          167 PNQLGEIWLRGPNMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYK  228 (236)
Q Consensus       167 ~g~~Gel~v~~~~~~~~~~~~~~~~~~~~~~~~~~~TgD~~~~~~~g~~~~~GR~~d~i~~~  228 (236)
                      +|+.|||+++++.++.+|+++++.+...|..+|||+|||+|++|++|++++.||.||+||++
T Consensus       356 ~g~~Gei~i~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~g~~d~~G~~~~~GR~~~~i~~~  417 (417)
T PF00501_consen  356 PGEPGEIVIRGPNVFSGYYNDPELTAEAFIDDGWYRTGDLGRLDEDGYLYILGRSDDMIKVR  417 (417)
T ss_dssp             TTSEEEEEEESTTSBSEETTBHHHHHHHEETTSEEEEEEEEEEETTSEEEEEEEGSCEEEET
T ss_pred             ccccccccccCCccceeeeccccccccccccccceecceEEEECCCCeEEEEEeeCCEEEeC
Confidence            99999999999999999999999999888666899999999999999999999999999974

This region is a Ser/Thr/Gly-rich domain that is further characterised by a conserved Pro-Lys-Gly triplet. The family of enzymes includes luciferase, long chain fatty acid Co-A ligase, acetyl-CoA synthetase and various other closely-related synthetases.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2V7B_A 2Y4O_B 2VSQ_A 3L8C_B 1RY2_A 3KXW_A 3LNV_A 3ETC_B 3A9U_A 3A9V_A ....

>TIGR02188 Ac_CoA_lig_AcsA acetate--CoA ligase

Probab=100.00  E-value=1.1e-37  Score=273.15  Aligned_cols=228  Identities=28%  Similarity=0.378  Sum_probs=197.8

Q ss_pred             eccCCCCcEEEEecChhhHHhHHHHHHHHhhcCcEEEEcCC----CCHHHHHHHHHhcCceEEEeChHHHHHHHhcCCc-
Q 026609            7 ETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK----FDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLV-   81 (236)
Q Consensus         7 ~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~-   81 (236)
                      .+++.++|++++.+|++|..++...++.++..|+++++.+.    +++..+++.++++++|++.++|++++.|.+.... 
T Consensus       272 ~~~~~~~d~~~~~~~~~~~~g~~~~~~~~l~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~  351 (625)
T TIGR02188       272 VFDIKDGDIFWCTADVGWITGHSYIVYGPLANGATTVMFEGTPTYPDPGRFWEIIEKHKVTIFYTAPTAIRALMRLGDEW  351 (625)
T ss_pred             ccCCCCCcEEEECCCchhhhccHHHHHHHHHcCCeEEEECCCCCCCChhHHHHHHHHhCCeEEEeCHHHHHHHHhcCCcc
Confidence            45778899999999999999987788999999999999753    4799999999999999999999999999886532 


Q ss_pred             -CCCCCCCceEEeecCCCCCHHHHHHHHHhCCC--CceeeccccccccccccccccCCCCCCCCCCccccCCCcEEEEEe
Q 026609           82 -KKFDLSSLKLVGSGAAPLGKELMEECAKNVPS--ATVIQVGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVS  158 (236)
Q Consensus        82 -~~~~l~~lr~i~~~G~~~~~~~~~~~~~~~~~--~~v~~~~YG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~  158 (236)
                       ...+++++|.++++|+++++++++++.+.++.  ..+++ .||+||++..+..........+++.+|+|+++++++++|
T Consensus       352 ~~~~~l~~lr~i~~~G~~l~~~~~~~~~~~~~~~~~~i~~-~yG~TE~~~~~~~~~~~~~~~~~~~~G~p~~g~~~~i~d  430 (625)
T TIGR02188       352 VKKHDLSSLRLLGSVGEPINPEAWMWYYKVVGKERCPIVD-TWWQTETGGIMITPLPGATPTKPGSATLPFFGIEPAVVD  430 (625)
T ss_pred             cccCCccceeEEEEecCCCCHHHHHHHHHHcCCCCCceEe-cccccccCCceeecCCCCCCcCCCcccCCcCCceEEEEC
Confidence             23467899999999999999999999998863  67888 999999987655432222234567899999999999999


Q ss_pred             CCCCCCCC-CCCceEEEEec--CccchhhcCCccccccccc--CCCeEecCceEEEcCCCcEEEEcccCCceeeccEEee
Q 026609          159 VDTQKPLP-PNQLGEIWLRG--PNMMRGYYNNEQATKLTID--KKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVT  233 (236)
Q Consensus       159 ~~~~~~~~-~g~~Gel~v~~--~~~~~~~~~~~~~~~~~~~--~~~~~~TgD~~~~~~~g~~~~~GR~~d~i~~~G~~i~  233 (236)
                       ++|++++ +|+.|||++++  |+++.+||++++.+...+.  .+|||+|||++++|++|.+++.||+||+||++|++|+
T Consensus       431 -~~g~~~~~~g~~GeL~v~~p~p~~~~gy~~~~~~~~~~~~~~~~g~~~TGDl~~~d~dG~l~i~GR~dd~i~~~G~ri~  509 (625)
T TIGR02188       431 -EEGNPVEGPGEGGYLVIKQPWPGMLRTIYGDHERFVDTYFSPFPGYYFTGDGARRDKDGYIWITGRVDDVINVSGHRLG  509 (625)
T ss_pred             -CCCCCCCCCCCeEEEEEccCCCcccccccCChHHHHHHHhccCCCEEECCceEEEcCCCcEEEEecccCEEEeCCEEEC
Confidence             6889999 99999999999  6899999999987766653  3789999999999999999999999999999999999


Q ss_pred             cCC
Q 026609          234 SNW  236 (236)
Q Consensus       234 p~~  236 (236)
                      |.|
T Consensus       510 p~e  512 (625)
T TIGR02188       510 TAE  512 (625)
T ss_pred             HHH
Confidence            975

This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA synthetase and acetyl-activating enzyme. It catalyzes the reaction ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA and belongs to the family of AMP-binding enzymes described by Pfam model pfam00501.

>PLN02614 long-chain acyl-CoA synthetase

Probab=100.00  E-value=4.2e-38  Score=276.78  Aligned_cols=222  Identities=30%  Similarity=0.475  Sum_probs=184.5

Q ss_pred             cCCCCcEEEEecChhhHHhHHHHHHHHhhcCcEEEEcCCCCHHHHHHHHHhcCceEEEeChHHHHHHHhcCCcC------
Q 026609            9 AGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVK------   82 (236)
Q Consensus         9 ~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~------   82 (236)
                      ++.++|++++.+|++|.++.. ....+++.|+++++.+ +++..+++.++++++|+++++|++++.+.+.....      
T Consensus       265 ~~~~~d~~l~~lPl~H~~~~~-~~~~~l~~G~~v~~~~-~~~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~~~~~~~~~~  342 (666)
T PLN02614        265 ALTVKDVYLSYLPLAHIFDRV-IEECFIQHGAAIGFWR-GDVKLLIEDLGELKPTIFCAVPRVLDRVYSGLQKKLSDGGF  342 (666)
T ss_pred             CCCCCcEEEEeccHHHHHHHH-HHHHHHHhCCEEEEeC-CCHHHHHHHHHHhCCeEEEecHHHHHHHHHHHHHHHhccCH
Confidence            467889999999999999984 4566788999998875 58999999999999999999999998876421000      


Q ss_pred             -------------------------CC-------------CC-CCceEEeecCCCCCHHHHHHHHHhCCCCceeeccccc
Q 026609           83 -------------------------KF-------------DL-SSLKLVGSGAAPLGKELMEECAKNVPSATVIQVGYGL  123 (236)
Q Consensus        83 -------------------------~~-------------~l-~~lr~i~~~G~~~~~~~~~~~~~~~~~~~v~~~~YG~  123 (236)
                                               ..             .+ +++|.+++||+++++++ +.|.+.+++..+++ .||+
T Consensus       343 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~lr~~~~Gga~l~~~~-~~~~~~~~~~~i~~-~YG~  420 (666)
T PLN02614        343 LKKFVFDSAFSYKFGNMKKGQSHVEASPLCDKLVFNKVKQGLGGNVRIILSGAAPLASHV-ESFLRVVACCHVLQ-GYGL  420 (666)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCCCcccchHHHHHHHHHHHHHhCCcEEEEEEcCCCCCHHH-HHHHHHhcCCCEEe-eCch
Confidence                                     00             01 58999999999999875 56777776578888 9999


Q ss_pred             cccccccccccCCCCCCCCCCccccCCCcEEEEEeCCC--CCCCCCCCceEEEEecCccchhhcCCcccccccccCCCeE
Q 026609          124 TETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDT--QKPLPPNQLGEIWLRGPNMMRGYYNNEQATKLTIDKKGWV  201 (236)
Q Consensus       124 tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~--~~~~~~g~~Gel~v~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (236)
                      ||++...+..... .....+++|+|+|+++++++|+++  ++++++|+.|||+|+|+.++.|||++++.+...| .+|||
T Consensus       421 TE~~~~~~~~~~~-~~~~~gsvG~p~pg~evki~d~~~~~~~~~~~g~~GEl~vrGp~v~~GY~~~pe~T~~~f-~dGw~  498 (666)
T PLN02614        421 TESCAGTFVSLPD-ELDMLGTVGPPVPNVDIRLESVPEMEYDALASTPRGEICIRGKTLFSGYYKREDLTKEVL-IDGWL  498 (666)
T ss_pred             Hhhhhheeeeccc-cCCcCCcccCcCCceEEEEeeecccCcccCCCCCCceEEEcCCcccccccCCHHHhhhhh-ccCCc
Confidence            9987654432222 123467899999999999998332  4788999999999999999999999999999888 68999


Q ss_pred             ecCceEEEcCCCcEEEEcccCCceee-ccEEeecCC
Q 026609          202 HTGDLGYFDGDGQLYVVDRIKELIKY-KGFQVTSNW  236 (236)
Q Consensus       202 ~TgD~~~~~~~g~~~~~GR~~d~i~~-~G~~i~p~~  236 (236)
                      +|||+|++|+||+++|+||+||+||+ +|++|+|+|
T Consensus       499 ~TGDlg~~d~dG~l~i~gR~kd~ik~~~G~~V~p~e  534 (666)
T PLN02614        499 HTGDVGEWQPNGSMKIIDRKKNIFKLSQGEYVAVEN  534 (666)
T ss_pred             ccceEEEEcCCCCEEEEEcchhceecCCCeeecHHH
Confidence            99999999999999999999999997 799999975

>PRK07788 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.2e-37  Score=269.05  Aligned_cols=222  Identities=27%  Similarity=0.380  Sum_probs=194.4

Q ss_pred             eeccCCCCcEEEEecChhhHHhHHHHHHHHhhcCcEEEEcCCCCHHHHHHHHHhcCceEEEeChHHHHHHHhcCCc--CC
Q 026609            6 QETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLV--KK   83 (236)
Q Consensus         6 ~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~--~~   83 (236)
                      ..+...++|+++..+|++|.+|+ ..++.++..|+++++.+.+++..+++.++++++|.+.++|+++..|++....  ..
T Consensus       241 ~~~~~~~~d~~~~~~p~~~~~g~-~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~  319 (549)
T PRK07788        241 SRVPFRAGETTLLPAPMFHATGW-AHLTLAMALGSTVVLRRRFDPEATLEDIAKHKATALVVVPVMLSRILDLGPEVLAK  319 (549)
T ss_pred             hhCCCCcCCeEEEccchHHHHHH-HHHHHHHHhCCEEEECCCCCHHHHHHHHHHhCCcEEEEHHHHHHHHHhCcccccCC
Confidence            34567788999999999999999 5677899999999999889999999999999999999999999999887654  45


Q ss_pred             CCCCCceEEeecCCCCCHHHHHHHHHhCCCCceeeccccccccccccccccCCCCCCCCCCccccCCCcEEEEEeCCCCC
Q 026609           84 FDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQK  163 (236)
Q Consensus        84 ~~l~~lr~i~~~G~~~~~~~~~~~~~~~~~~~v~~~~YG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~  163 (236)
                      ..++++|.++++|+++++++.++|.+.++ ..+++ .||+||++..+.... .+....++.+|+|.++++++++| ++++
T Consensus       320 ~~~~~lr~i~~gG~~l~~~~~~~~~~~~~-~~l~~-~YG~TE~~~~~~~~~-~~~~~~~~~vG~~~~~~~~~i~d-~~~~  395 (549)
T PRK07788        320 YDTSSLKIIFVSGSALSPELATRALEAFG-PVLYN-LYGSTEVAFATIATP-EDLAEAPGTVGRPPKGVTVKILD-ENGN  395 (549)
T ss_pred             CCCCceeEEEEeCCCCCHHHHHHHHHHhC-cccee-ccCcchhchhhccCh-hhhhhcCCCcccCCCCcEEEEEC-CCcC
Confidence            56789999999999999999999999987 67888 999999986655432 22234457899999999999999 5789


Q ss_pred             CCCCCCceEEEEecCccchhhcCCcccccccccCCCeEecCceEEEcCCCcEEEEcccCCceeeccEEeecCC
Q 026609          164 PLPPNQLGEIWLRGPNMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSNW  236 (236)
Q Consensus       164 ~~~~g~~Gel~v~~~~~~~~~~~~~~~~~~~~~~~~~~~TgD~~~~~~~g~~~~~GR~~d~i~~~G~~i~p~~  236 (236)
                      +++.|+.|||+++++.++.+|++++..   .. .+|||+|||+++++++|.+++.||.||+||++|++|+|.|
T Consensus       396 ~~~~g~~Gel~v~g~~~~~gY~~~~~~---~~-~~g~~~TGDl~~~~~~g~l~~~GR~dd~i~~~G~~v~p~e  464 (549)
T PRK07788        396 EVPRGVVGRIFVGNGFPFEGYTDGRDK---QI-IDGLLSSGDVGYFDEDGLLFVDGRDDDMIVSGGENVFPAE  464 (549)
T ss_pred             CCCCCCeEEEEEeCCCccccccCCCcc---cc-cCCceecCceEEEcCCCCEEEeccCcceEEECCEEECHHH
Confidence            999999999999999999999988765   12 4789999999999999999999999999999999999965

>PLN02860 o-succinylbenzoate-CoA ligase

Probab=100.00  E-value=1.1e-37  Score=269.98  Aligned_cols=223  Identities=29%  Similarity=0.466  Sum_probs=193.1

Q ss_pred             eeccCCCCcEEEEecChhhHHhHHHHHHHHhhcCcEEEEcCCCCHHHHHHHHHhcCceEEEeChHHHHHHHhcCCc--CC
Q 026609            6 QETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLV--KK   83 (236)
Q Consensus         6 ~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~--~~   83 (236)
                      ..++..++|+++..+|++|..|+ ..++.++..|+++++.+.+++..+++.++++++|.+.++|+++..|++....  ..
T Consensus       206 ~~~~~~~~d~~l~~~pl~h~~g~-~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~  284 (563)
T PLN02860        206 AIVGYGEDDVYLHTAPLCHIGGL-SSALAMLMVGACHVLLPKFDAKAALQAIKQHNVTSMITVPAMMADLISLTRKSMTW  284 (563)
T ss_pred             hhcCCCCCCEEEEecCchhhccH-HHHHHHHHcCceEEecCCCCHHHHHHHHHHhCCeeEEeChHHHHHHHHhhhhhhcc
Confidence            34677889999999999999999 5788999999999999999999999999999999999999999999876432  23


Q ss_pred             CCCCCceEEeecCCCCCHHHHHHHHHhCCCCceeeccccccccccccccccCCCC---------------------CCCC
Q 026609           84 FDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVGYGLTETSGIATMENSFAG---------------------SRNI  142 (236)
Q Consensus        84 ~~l~~lr~i~~~G~~~~~~~~~~~~~~~~~~~v~~~~YG~tE~g~~~~~~~~~~~---------------------~~~~  142 (236)
                      ..++++|.++++|+++++++.+.|.+.|++..+++ .||+||++..+........                     ....
T Consensus       285 ~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~-~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  363 (563)
T PLN02860        285 KVFPSVRKILNGGGSLSSRLLPDAKKLFPNAKLFS-AYGMTEACSSLTFMTLHDPTLESPKQTLQTVNQTKSSSVHQPQG  363 (563)
T ss_pred             ccccceeEEEeCCCcCCHHHHHHHHHhcCCCceec-CCCccccCcccccccccccccccchhhhhhhcccccccccccCC
Confidence            46789999999999999999999999997788998 9999999765443211100                     1112


Q ss_pred             CCccccCCCcEEEEEeCCCCCCCCCCCceEEEEecCccchhhcCCcccccccccCCCeEecCceEEEcCCCcEEEEcccC
Q 026609          143 GSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIK  222 (236)
Q Consensus       143 ~~~g~p~~~~~~~~~~~~~~~~~~~g~~Gel~v~~~~~~~~~~~~~~~~~~~~~~~~~~~TgD~~~~~~~g~~~~~GR~~  222 (236)
                      ..+|+|++++++++++++      +|+.|||+++++.++.+|+++++.+...+..+|||+|||+++++++|.+++.||.|
T Consensus       364 ~~vG~p~~~~~v~i~~~~------~g~~Gel~v~g~~~~~GY~~~~~~t~~~~~~~g~~~TGDl~~~d~dG~l~~~GR~~  437 (563)
T PLN02860        364 VCVGKPAPHVELKIGLDE------SSRVGRILTRGPHVMLGYWGQNSETASVLSNDGWLDTGDIGWIDKAGNLWLIGRSN  437 (563)
T ss_pred             cccCCccCCcEEEEecCC------CCceeEEEEecCcccccccCCccccchhccCCCeEEccceEEEcCCCCEEEeeccc
Confidence            357999999999999854      68899999999999999999999998888788999999999999999999999999


Q ss_pred             CceeeccEEeecCC
Q 026609          223 ELIKYKGFQVTSNW  236 (236)
Q Consensus       223 d~i~~~G~~i~p~~  236 (236)
                      |+||++|++|+|.|
T Consensus       438 d~i~~~G~~v~p~e  451 (563)
T PLN02860        438 DRIKTGGENVYPEE  451 (563)
T ss_pred             ceeEECCEEccHHH
Confidence            99999999999975

>TIGR02316 propion_prpE propionate--CoA ligase

Probab=100.00  E-value=1.6e-37  Score=272.16  Aligned_cols=229  Identities=21%  Similarity=0.239  Sum_probs=195.2

Q ss_pred             eeccCCCCcEEEEecChhhHHhHHHHHHHHhhcCcEEEEcCC----CCHHHHHHHHHhcCceEEEeChHHHHHHHhcCCc
Q 026609            6 QETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK----FDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLV   81 (236)
Q Consensus         6 ~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~   81 (236)
                      ..+++.++|++++.+|++|..|+...++++++.|+++++.+.    +++..+++.++++++|.++++|++++.|.+....
T Consensus       267 ~~~~~~~~d~~~~~~~~~~~~g~~~~~~~~L~~G~~~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~  346 (628)
T TIGR02316       267 AIFGIRAGQVMFSASDVGWVVGHSYIVYAPLLAGAATVLYEGLPTNPDPGVWWSIVERYGVRTMFSAPTAIRVLKKQDAA  346 (628)
T ss_pred             HhcCCCCCcEEEEcCCCCeeehhhHHHHHHHhccceEEEeCCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcCCc
Confidence            346788899999999999999987788999999999999763    4789999999999999999999999999876432


Q ss_pred             --CCCCCCCceEEeecCCCCCHHHHHHHHHhCCCCceeeccccccccccccccccCC--CCCCCCCCccccCCCcEEEEE
Q 026609           82 --KKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVGYGLTETSGIATMENSF--AGSRNIGSAGALAPGVEALIV  157 (236)
Q Consensus        82 --~~~~l~~lr~i~~~G~~~~~~~~~~~~~~~~~~~v~~~~YG~tE~g~~~~~~~~~--~~~~~~~~~g~p~~~~~~~~~  157 (236)
                        ...+++++|.++++|+++++++.+++.+.++ ..+++ .||+||++..+......  ......+.+|+|+++++++++
T Consensus       347 ~~~~~~l~~lr~~~~gGe~l~~~~~~~~~~~~~-~~~~~-~yG~TE~~~~~~~~~~~~~~~~~~~gs~G~p~~g~~v~i~  424 (628)
T TIGR02316       347 WLRKHDLSSLHWLFLAGEPLDEPTAHWITDGLG-KPVID-NYWQTETGWPVLAIMPGLDLKPVKLGSPGLPMYGYHLRVL  424 (628)
T ss_pred             ccccCCccceeEEEEecCCCCHHHHHHHHHHhC-CCEEe-cccccccCceeecCCCCCCcCCCCCCCcccCcCCceEEEE
Confidence              3456889999999999999999999999887 77888 99999998544332211  112345778999999999999


Q ss_pred             eCCCCCCCCCCCceEEEEecC---ccchhhcCCcccccccc---cCCCeEecCceEEEcCCCcEEEEcccCCceeeccEE
Q 026609          158 SVDTQKPLPPNQLGEIWLRGP---NMMRGYYNNEQATKLTI---DKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQ  231 (236)
Q Consensus       158 ~~~~~~~~~~g~~Gel~v~~~---~~~~~~~~~~~~~~~~~---~~~~~~~TgD~~~~~~~g~~~~~GR~~d~i~~~G~~  231 (236)
                      |++++++++.|+.|||++++|   +.+.+|+++++.+...+   ..++||+|||++++|+||+++++||.||+||++|++
T Consensus       425 d~~~g~~~~~g~~Gel~v~gp~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~g~~d~dG~l~i~GR~dd~ik~~G~r  504 (628)
T TIGR02316       425 DEATGRPCGPNEKGVLTVVPPLPPGCLSTVWGDDARFLKTYWSHFKRPLYSSFDWGIRDEDGYTFILGRTDDVINVAGHR  504 (628)
T ss_pred             ECCCCCCCCCCCcEEEEEecCCCccccccccCChHHHHHhhhhcCCCCEEECCceEEEcCCCcEEEEEcCcceEEeCCEE
Confidence            976899999999999999998   56788999887766543   246799999999999999999999999999999999


Q ss_pred             eecCC
Q 026609          232 VTSNW  236 (236)
Q Consensus       232 i~p~~  236 (236)
                      |+|.|
T Consensus       505 v~~~e  509 (628)
T TIGR02316       505 LGTRE  509 (628)
T ss_pred             eCHHH
Confidence            99975

This family contains one of three readily separable clades of proteins in the group of acetate and propionate--CoA ligases. Characterized members of this family act on propionate. From propionyl-CoA, there is a cyclic degradation pathway: it is ligated by PrpC to the TCA cycle intermediate oxaloacetate, acted upon further by PrpD and an aconitase, then cleaved by PrpB to pyruvate and the TCA cycle intermediate succinate.

>PTZ00342 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=1.3e-37  Score=274.58  Aligned_cols=220  Identities=24%  Similarity=0.363  Sum_probs=187.3

Q ss_pred             CCCcEEEEecChhhHHhHHHHHHHHhhcCcEEEEcCCCCHHHHHHHHHhcCceEEEeChHHHHHHHhc--------CCcC
Q 026609           11 ELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKH--------GLVK   82 (236)
Q Consensus        11 ~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~--------~~~~   82 (236)
                      .++|++++.+|++|.+++. ..+.+++.|+++++.+. ++..+++.++++++|+++++|.++..|.+.        +...
T Consensus       345 ~~~d~~ls~LPL~Hi~~~~-~~~~~l~~G~~i~~~~~-~~~~l~~di~~~~pT~~~~VP~v~~~i~~~i~~~~~~~~~~~  422 (746)
T PTZ00342        345 YNPKTHLSYLPISHIYERV-IAYLSFMLGGTINIWSK-DINYFSKDIYNSKGNILAGVPKVFNRIYTNIMTEINNLPPLK  422 (746)
T ss_pred             CCCCeEEEeCcHHHHHHHH-HHHHHHHcCCEEEEeCC-CHHHHHHHHHHhCCcEEEchHHHHHHHHHHHHHHHhhcCHHH
Confidence            3568999999999999994 56778999999998865 899999999999999999999999988652        1000


Q ss_pred             C----------------------------------CCCCCceEEeecCCCCCHHHHHHHHHhCCCCceeecccccccccc
Q 026609           83 K----------------------------------FDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVGYGLTETSG  128 (236)
Q Consensus        83 ~----------------------------------~~l~~lr~i~~~G~~~~~~~~~~~~~~~~~~~v~~~~YG~tE~g~  128 (236)
                      .                                  ...+++|.+++||+++++++.++|+..++ ..+.+ .||+||+++
T Consensus       423 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~v~~kir~~lg~~lr~~~sGGapl~~~~~~~~~~~~g-~~i~~-gYGlTEt~~  500 (746)
T PTZ00342        423 RFLVKKILSLRKSNNNGGFSKFLEGITHISSKIKDKVNPNLEVILNGGGKLSPKIAEELSVLLN-VNYYQ-GYGLTETTG  500 (746)
T ss_pred             HHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHhhCCCeEEEEEcCCCCCHHHHHHHHHhcC-CCEEE-eeccCcccc
Confidence            0                                  01268999999999999999999999887 88999 999999976


Q ss_pred             ccccccCCCCCCCCCCccccC-CCcEEEEEeCCCCCCCCCCCceEEEEecCccchhhcCCcccccccccCCCeEecCceE
Q 026609          129 IATMENSFAGSRNIGSAGALA-PGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQATKLTIDKKGWVHTGDLG  207 (236)
Q Consensus       129 ~~~~~~~~~~~~~~~~~g~p~-~~~~~~~~~~~~~~~~~~g~~Gel~v~~~~~~~~~~~~~~~~~~~~~~~~~~~TgD~~  207 (236)
                      ..+.....  ....+++|.|+ |+++++++|.++......+..|||+++|+.++.|||++++.+...|+.+|||+|||+|
T Consensus       501 ~~~~~~~~--~~~~gsvG~p~~pg~e~ki~d~~~~~~~~~~~~GEl~vrGp~v~~GY~~~pe~T~~~f~~dGW~~TGDig  578 (746)
T PTZ00342        501 PIFVQHAD--DNNTESIGGPISPNTKYKVRTWETYKATDTLPKGELLIKSDSIFSGYFLEKEQTKNAFTEDGYFKTGDIV  578 (746)
T ss_pred             eeeeccCC--CCCcccccCcCCCcEEEEEecccccccCCCCCceEEEEecCcccccccCChhhhhhhcCcCCcccCCcEE
Confidence            65544332  34568899998 9999999985554444555679999999999999999999999999889999999999


Q ss_pred             EEcCCCcEEEEcccCCceee-ccEEeecCC
Q 026609          208 YFDGDGQLYVVDRIKELIKY-KGFQVTSNW  236 (236)
Q Consensus       208 ~~~~~g~~~~~GR~~d~i~~-~G~~i~p~~  236 (236)
                      ++|+||+++++||++|+||+ +|++|+|+|
T Consensus       579 ~~d~dG~l~i~gR~kdlIkls~Ge~I~p~e  608 (746)
T PTZ00342        579 QINKNGSLTFLDRSKGLVKLSQGEYIETDM  608 (746)
T ss_pred             EECCCCeEEEEccCCCeEEeCCCEEEchHH
Confidence            99999999999999999996 799999975

>PTZ00237 acetyl-CoA synthetase; Provisional

Probab=100.00  E-value=1.4e-37  Score=272.88  Aligned_cols=224  Identities=25%  Similarity=0.338  Sum_probs=192.0

Q ss_pred             ccCCCCcEEEEecChhhHHhHHHHHHHHhhcCcEEEEcCC--CC----HHHHHHHHHhcCceEEEeChHHHHHHHhcCCc
Q 026609            8 TAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK--FD----LEMFLRAIEKHRVTHIWVVPPLILALAKHGLV   81 (236)
Q Consensus         8 ~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~--~~----~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~   81 (236)
                      +....+|++++..|++|+.++ ..++.++..|+++++.+.  +.    +..+++.++++++|.+.++|++++.|++....
T Consensus       291 ~~~~~~d~~~~~~~~~w~~~~-~~~~~~l~~G~t~v~~~~~~~~p~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~  369 (647)
T PTZ00237        291 IEKDIPTVVFSHSSIGWVSFH-GFLYGSLSLGNTFVMFEGGIIKNKHIEDDLWNTIEKHKVTHTLTLPKTIRYLIKTDPE  369 (647)
T ss_pred             cCCCCCcEEEEcCCCceEeeH-HHHHHHHhCCcEEEEeCCCCCCCCCchHHHHHHHHHhCeEEEEeCHHHHHHHHhhCcc
Confidence            456678999999999999776 568899999999999763  12    68899999999999999999999999875321


Q ss_pred             -----CCCCCCCceEEeecCCCCCHHHHHHHHHhCCCCceeeccccccccccccccccCCCCCCCCCCccccCCCcEEEE
Q 026609           82 -----KKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALI  156 (236)
Q Consensus        82 -----~~~~l~~lr~i~~~G~~~~~~~~~~~~~~~~~~~v~~~~YG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~~  156 (236)
                           ...+++++|.++++|+++++++.+++.+.++ ..+.+ .||+||++........ ......+.+|+|++++++++
T Consensus       370 ~~~~~~~~~l~~Lr~i~~~G~~l~~~~~~~~~~~~g-~~i~~-~yG~TE~~~~~~~~~~-~~~~~~~s~G~p~~g~~~~i  446 (647)
T PTZ00237        370 ATIIRSKYDLSNLKEIWCGGEVIEESIPEYIENKLK-IKSSR-GYGQTEIGITYLYCYG-HINIPYNATGVPSIFIKPSI  446 (647)
T ss_pred             ccccccccCcchheEEEecCccCCHHHHHHHHHhcC-CCEEe-eechHHhChhhhccCC-CCCCCCCCCccCcCCceEEE
Confidence                 3446889999999999999999999999987 88888 9999999865543222 11233478999999999999


Q ss_pred             EeCCCCCCCCCCCceEEEEecC---ccchhhcCCcccccccccC-CCeEecCceEEEcCCCcEEEEcccCCceeeccEEe
Q 026609          157 VSVDTQKPLPPNQLGEIWLRGP---NMMRGYYNNEQATKLTIDK-KGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV  232 (236)
Q Consensus       157 ~~~~~~~~~~~g~~Gel~v~~~---~~~~~~~~~~~~~~~~~~~-~~~~~TgD~~~~~~~g~~~~~GR~~d~i~~~G~~i  232 (236)
                      +| ++|++++.|+.|||++++|   +++.+||++++.+...|.. +|||+|||++++|++|++++.||+||+||++|+||
T Consensus       447 ~d-~~g~~~~~ge~GEl~v~~p~~p~~~~gy~~~~~~~~~~f~~~~g~~~TGDlg~~d~dG~l~i~GR~dd~i~~~G~rI  525 (647)
T PTZ00237        447 LS-EDGKELNVNEIGEVAFKLPMPPSFATTFYKNDEKFKQLFSKFPGYYNSGDLGFKDENGYYTIVSRSDDQIKISGNKV  525 (647)
T ss_pred             EC-CCCCCCCCCCceEEEEeccCCchhhCceeCCHHHHHHHHhCCCCEEECCcEEEECCCCeEEEEeccCCEEEECCEEe
Confidence            99 5899999999999999985   7889999999888876643 68999999999999999999999999999999999


Q ss_pred             ecCC
Q 026609          233 TSNW  236 (236)
Q Consensus       233 ~p~~  236 (236)
                      +|.|
T Consensus       526 ~p~e  529 (647)
T PTZ00237        526 QLNT  529 (647)
T ss_pred             CHHH
Confidence            9975

>PRK13295 cyclohexanecarboxylate-CoA ligase; Reviewed

Probab=100.00  E-value=5.5e-37  Score=264.92  Aligned_cols=225  Identities=24%  Similarity=0.351  Sum_probs=200.0

Q ss_pred             eccCCCCcEEEEecChhhHHhHHHHHHHHhhcCcEEEEcCCCCHHHHHHHHHhcCceEEEeChHHHHHHHhcCCcCCCCC
Q 026609            7 ETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDL   86 (236)
Q Consensus         7 ~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l   86 (236)
                      .++..++|++++.+|++|..|+...++.++..|+++++.+.+++..+++.++++++|.+.++|+++..|..........+
T Consensus       232 ~~~~~~~~~~l~~~p~~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~l~~~~vt~~~~~p~~~~~l~~~~~~~~~~~  311 (547)
T PRK13295        232 RLGLGADDVILMASPMAHQTGFMYGLMMPVMLGATAVLQDIWDPARAAELIRTEGVTFTMASTPFLTDLTRAVKESGRPV  311 (547)
T ss_pred             HhCCCCCCeEEEecCchhhhhHHHHHHHHHHcCCeEEeCCCCCHHHHHHHHHHcCCcEEEecHHHHHHHHhcccccCCCc
Confidence            35678899999999999999987889999999999999988999999999999999999999999999988776666778


Q ss_pred             CCceEEeecCCCCCHHHHHHHHHhCCCCceeeccccccccccccccccCCCCCCCCCCccccCCCcEEEEEeCCCCCCCC
Q 026609           87 SSLKLVGSGAAPLGKELMEECAKNVPSATVIQVGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLP  166 (236)
Q Consensus        87 ~~lr~i~~~G~~~~~~~~~~~~~~~~~~~v~~~~YG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~  166 (236)
                      +++|.++++|+++++++.+++.+.++ ..+++ .||+||++.++..............+|+|.++++++++| +++++++
T Consensus       312 ~~l~~~~~~G~~l~~~~~~~~~~~~~-~~~~~-~YG~TE~~~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~d-~~~~~~~  388 (547)
T PRK13295        312 SSLRTFLCAGAPIPGALVERARAALG-AKIVS-AWGMTENGAVTLTKLDDPDERASTTDGCPLPGVEVRVVD-ADGAPLP  388 (547)
T ss_pred             ccceEEEEecCCCCHHHHHHHHHHhC-CCeEE-eccCCCCCCeeeccCCCcchhccCccccccCCcEEEEEC-CCCCCCC
Confidence            89999999999999999999999985 88999 999999987665443221123345789999999999999 5788999


Q ss_pred             CCCceEEEEecCccchhhcCCcccccccccCCCeEecCceEEEcCCCcEEEEcccCCceeeccEEeecCC
Q 026609          167 PNQLGEIWLRGPNMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSNW  236 (236)
Q Consensus       167 ~g~~Gel~v~~~~~~~~~~~~~~~~~~~~~~~~~~~TgD~~~~~~~g~~~~~GR~~d~i~~~G~~i~p~~  236 (236)
                      .|+.|||+++++.++.+|+++++.+...  .+|||+|||+++++++|++++.||.||++|++|++|+|.|
T Consensus       389 ~g~~Gel~v~g~~~~~gY~~~~~~t~~~--~~g~~~TGD~~~~~~~g~l~~~gR~~~~i~~~G~~v~p~~  456 (547)
T PRK13295        389 AGQIGRLQVRGCSNFGGYLKRPQLNGTD--ADGWFDTGDLARIDADGYIRISGRSKDVIIRGGENIPVVE  456 (547)
T ss_pred             CCCCCeEEEEcCcccccccCCccccccC--CCCCeecceEEEEcCCceEEEEeccCCeEEECCEEECHHH
Confidence            9999999999999999999998887665  5789999999999999999999999999999999999864

>PRK00174 acetyl-CoA synthetase; Provisional

Probab=100.00  E-value=4e-37  Score=270.12  Aligned_cols=228  Identities=29%  Similarity=0.411  Sum_probs=196.7

Q ss_pred             eccCCCCcEEEEecChhhHHhHHHHHHHHhhcCcEEEEcCC----CCHHHHHHHHHhcCceEEEeChHHHHHHHhcCCc-
Q 026609            7 ETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK----FDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLV-   81 (236)
Q Consensus         7 ~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~-   81 (236)
                      .++..++|++++.+|++|..++...++.++..|+++++.+.    +++..+++.++++++|++.++|++++.|++.... 
T Consensus       281 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~  360 (637)
T PRK00174        281 VFDYKDGDVYWCTADVGWVTGHSYIVYGPLANGATTLMFEGVPNYPDPGRFWEVIDKHKVTIFYTAPTAIRALMKEGDEH  360 (637)
T ss_pred             ccCCCCCcEEEEcCCchHhhhhHHHHHHHHHcCCEEEEECCCCCCCChHHHHHHHHhcCCeEEeecHHHHHHHHhcCCcc
Confidence            45778889999999999999987789999999999999753    4799999999999999999999999999886532 


Q ss_pred             -CCCCCCCceEEeecCCCCCHHHHHHHHHhCCC--CceeeccccccccccccccccCCCCCCCCCCccccCCCcEEEEEe
Q 026609           82 -KKFDLSSLKLVGSGAAPLGKELMEECAKNVPS--ATVIQVGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVS  158 (236)
Q Consensus        82 -~~~~l~~lr~i~~~G~~~~~~~~~~~~~~~~~--~~v~~~~YG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~  158 (236)
                       ...+++++|.++++|+++++++.+++.+.++.  ..+++ .||+||++.............+++.+|+|+++++++++|
T Consensus       361 ~~~~~~~~lr~i~~~Ge~l~~~~~~~~~~~~~~~~~~i~~-~YG~TE~~~~~~~~~~~~~~~~~~~vG~p~~g~~~~i~d  439 (637)
T PRK00174        361 PKKYDLSSLRLLGSVGEPINPEAWEWYYKVVGGERCPIVD-TWWQTETGGIMITPLPGATPLKPGSATRPLPGIQPAVVD  439 (637)
T ss_pred             cccCCccceeEEEEeCCCCCHHHHHHHHHHhCCCCCceEe-cccccccCCceEecCCCCCCcCCCcccCCCCCceEEEEC
Confidence             23467899999999999999999999998863  57888 999999987655432221233457899999999999999


Q ss_pred             CCCCCCCCCCCceEEEEec--CccchhhcCCcccccccc--cCCCeEecCceEEEcCCCcEEEEcccCCceeeccEEeec
Q 026609          159 VDTQKPLPPNQLGEIWLRG--PNMMRGYYNNEQATKLTI--DKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTS  234 (236)
Q Consensus       159 ~~~~~~~~~g~~Gel~v~~--~~~~~~~~~~~~~~~~~~--~~~~~~~TgD~~~~~~~g~~~~~GR~~d~i~~~G~~i~p  234 (236)
                       +++++++.|+.|||++++  ++++.+||++++.+...+  ..+|||+|||+++++++|.+++.||+||+||++|++|+|
T Consensus       440 -~~g~~~~~g~~Gel~v~g~~p~~~~gy~~~~~~~~~~~~~~~~g~~~TGDl~~~d~dG~l~~~GR~dd~ik~~G~~v~p  518 (637)
T PRK00174        440 -EEGNPLEGGEGGNLVIKDPWPGMMRTIYGDHERFVKTYFSTFKGMYFTGDGARRDEDGYYWITGRVDDVLNVSGHRLGT  518 (637)
T ss_pred             -CCCCCCCCCCcEEEEEcCCCCcccccccCCHHHHHHhhhcCCCCEEECCceEEEcCCCcEEEEEecccEEEeCCEEECH
Confidence             678999999999999999  689999999998776655  246899999999999999999999999999999999999


Q ss_pred             CC
Q 026609          235 NW  236 (236)
Q Consensus       235 ~~  236 (236)
                      .|
T Consensus       519 ~e  520 (637)
T PRK00174        519 AE  520 (637)
T ss_pred             HH
Confidence            75

>PRK08314 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=3.4e-37  Score=266.12  Aligned_cols=226  Identities=32%  Similarity=0.534  Sum_probs=201.8

Q ss_pred             eccCCCCcEEEEecChhhHHhHHHHHHHHhhcCcEEEEcCCCCHHHHHHHHHhcCceEEEeChHHHHHHHhcCCcCCCCC
Q 026609            7 ETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDL   86 (236)
Q Consensus         7 ~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l   86 (236)
                      .++..++|++++.+|++|.+|+...++.++..|+++++.+.+++..+++.++++++|.+.++|+++..++........++
T Consensus       225 ~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~i~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~ll~~~~~~~~~~  304 (546)
T PRK08314        225 WSNSTPESVVLAVLPLFHVTGMVHSMNAPIYAGATVVLMPRWDREAAARLIERYRVTHWTNIPTMVVDFLASPGLAERDL  304 (546)
T ss_pred             hhCCCCCceEEEEcCchHHHHHHHHHHHHHHcCCeEEecCCCCHHHHHHHHHHhcCceecccHHHHHHHHhCCCccccCc
Confidence            45678899999999999999998888999999999999999999999999999999999999999999988765556678


Q ss_pred             CCceEEeecCCCCCHHHHHHHHHhCCCCceeeccccccccccccccccCCCCCCCCCCccccCCCcEEEEEeCCCCCCCC
Q 026609           87 SSLKLVGSGAAPLGKELMEECAKNVPSATVIQVGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLP  166 (236)
Q Consensus        87 ~~lr~i~~~G~~~~~~~~~~~~~~~~~~~v~~~~YG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~  166 (236)
                      +++|.++++|+++++++.+++.+.++ ..+++ .||+||++.........  ......+|+|+++++++++|++++++++
T Consensus       305 ~~l~~~~~gG~~~~~~~~~~~~~~~~-~~~~~-~YG~tE~~~~~~~~~~~--~~~~~~~G~~~~g~~~~i~d~~~~~~~~  380 (546)
T PRK08314        305 SSLRYIGGGGAAMPEAVAERLKELTG-LDYVE-GYGLTETMAQTHSNPPD--RPKLQCLGIPTFGVDARVIDPETLEELP  380 (546)
T ss_pred             hhhheeeeccccCCHHHHHHHHHHcC-CcEEe-cccccccccceecCCCc--CCCCCccCcccCCeEEEEEeCCCCcCCC
Confidence            89999999999999999999999987 78888 99999998766543322  2345679999999999999988899999


Q ss_pred             CCCceEEEEecCccchhhcCCccccccccc---CCCeEecCceEEEcCCCcEEEEcccCCceeeccEEeecCC
Q 026609          167 PNQLGEIWLRGPNMMRGYYNNEQATKLTID---KKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSNW  236 (236)
Q Consensus       167 ~g~~Gel~v~~~~~~~~~~~~~~~~~~~~~---~~~~~~TgD~~~~~~~g~~~~~GR~~d~i~~~G~~i~p~~  236 (236)
                      .|..|||+++++.++.+|+++++.+...|.   ..+||+|||+++++++|.+++.||+||+|+++|++|+|.|
T Consensus       381 ~g~~Gel~v~g~~~~~gY~~~~~~t~~~f~~~~~~~~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~e  453 (546)
T PRK08314        381 PGEVGEIVVHGPQVFKGYWNRPEATAEAFIEIDGKRFFRTGDLGRMDEEGYFFITDRLKRMINASGFKVWPAE  453 (546)
T ss_pred             CCCceEEEEECCchhccccCChhHhhhhhhhcCCCceEecCCEEEEcCCCcEEEEecchhhEEeCCEEECHHH
Confidence            999999999999999999999888776662   2359999999999999999999999999999999999875

>PRK06839 acyl-CoA synthetase; Validated

Probab=100.00  E-value=5.3e-37  Score=261.97  Aligned_cols=225  Identities=32%  Similarity=0.480  Sum_probs=200.2

Q ss_pred             eccCCCCcEEEEecChhhHHhHHHHHHHHhhcCcEEEEcCCCCHHHHHHHHHhcCceEEEeChHHHHHHHhcCCcCCCCC
Q 026609            7 ETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDL   86 (236)
Q Consensus         7 ~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l   86 (236)
                      .++..++|++++.+|++|.+|+...++.++..|+++++.+.+++..+++.++++++|.+.++|++++.+++........+
T Consensus       184 ~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~  263 (496)
T PRK06839        184 AIDLTMHDRSIVLLPLFHIGGIGLFAFPTLFAGGVIIVPRKFEPTKALSMIEKHKVTVVMGVPTIHQALINCSKFETTNL  263 (496)
T ss_pred             HcCCCCCCeEEEeeCCcchhhHHHHHHHHHhcCcEEEEccCCCHHHHHHHHHhhCCeEEEehHHHHHHHHhCcccccCCC
Confidence            45677889999999999999997777889999999999888999999999999999999999999999998876666678


Q ss_pred             CCceEEeecCCCCCHHHHHHHHHhCCCCceeeccccccccccccccccCCCCCCCCCCccccCCCcEEEEEeCCCCCCCC
Q 026609           87 SSLKLVGSGAAPLGKELMEECAKNVPSATVIQVGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLP  166 (236)
Q Consensus        87 ~~lr~i~~~G~~~~~~~~~~~~~~~~~~~v~~~~YG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~  166 (236)
                      +++|.++++|+++++++.+.+.+.  +..+.+ .||+||++...............+.+|+|+++++++++|+ .++.++
T Consensus       264 ~~lr~~~~gG~~~~~~~~~~~~~~--g~~~~~-~YG~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~-~~~~~~  339 (496)
T PRK06839        264 QSVRWFYNGGAPCPEELMREFIDR--GFLFGQ-GFGMTETSPTVFMLSEEDARRKVGSIGKPVLFCDYELIDE-NKNKVE  339 (496)
T ss_pred             cccceEEECCCCCCHHHHHHHHHh--CCeeEe-eccCCCCCcceEecccccccccCCCCcccCCCceEEEECC-CcCCCC
Confidence            899999999999999999999887  478888 9999999876554333323445678999999999999995 666799


Q ss_pred             CCCceEEEEecCccchhhcCCcccccccccCCCeEecCceEEEcCCCcEEEEcccCCceeeccEEeecCC
Q 026609          167 PNQLGEIWLRGPNMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSNW  236 (236)
Q Consensus       167 ~g~~Gel~v~~~~~~~~~~~~~~~~~~~~~~~~~~~TgD~~~~~~~g~~~~~GR~~d~i~~~G~~i~p~~  236 (236)
                      .|+.|||+|+++.++.+|+++++.+...+ .+|||+|||+++++++|.+++.||.||+|+.+|++|+|.|
T Consensus       340 ~g~~Gel~v~~~~~~~gy~~~~~~~~~~~-~~g~~~TGDl~~~~~~g~~~~~GR~~d~i~~~G~~v~p~~  408 (496)
T PRK06839        340 VGEVGELLIRGPNVMKEYWNRPDATEETI-QDGWLCTGDLARVDEDGFVYIVGRKKEMIISGGENIYPLE  408 (496)
T ss_pred             CCCceEEEEECCCcchhhcCChHHHHHHH-cCCCeeecceEEEcCCCcEEEeccccceEEECCEEECHHH
Confidence            99999999999999999999998887776 6899999999999999999999999999999999999964

>PLN02736 long-chain acyl-CoA synthetase

Probab=100.00  E-value=1.5e-37  Score=273.21  Aligned_cols=225  Identities=28%  Similarity=0.424  Sum_probs=188.4

Q ss_pred             eeccCCCCcEEEEecChhhHHhHHHHHHHHhhcCcEEEEcCCCCHHHHHHHHHhcCceEEEeChHHHHHHHhcCCc----
Q 026609            6 QETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLV----   81 (236)
Q Consensus         6 ~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~----   81 (236)
                      ..++..++|++++.+|++|.+++. .++.++..|+++++.+. ++..+++.++++++|+++++|++++.+.+....    
T Consensus       255 ~~~~~~~~d~~l~~lPl~h~~~~~-~~~~~l~~G~~i~~~~~-~~~~~~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~  332 (651)
T PLN02736        255 LSTKFYPSDVHISYLPLAHIYERV-NQIVMLHYGVAVGFYQG-DNLKLMDDLAALRPTIFCSVPRLYNRIYDGITNAVKE  332 (651)
T ss_pred             hccCCCCCCEEEEeCCHHHHHHHH-HHHHHHHcCCEEEEeCC-CHHHHHHHHHHhCCcEEecchHHHHHHHHHHHHHHhc
Confidence            345677899999999999999994 67788999999988764 788999999999999999999999887653100    


Q ss_pred             ------------------------CC-------------CCC-CCceEEeecCCCCCHHHHHHHHHhCCCCceeeccccc
Q 026609           82 ------------------------KK-------------FDL-SSLKLVGSGAAPLGKELMEECAKNVPSATVIQVGYGL  123 (236)
Q Consensus        82 ------------------------~~-------------~~l-~~lr~i~~~G~~~~~~~~~~~~~~~~~~~v~~~~YG~  123 (236)
                                              ..             ..+ +++|.+++||+++++++.+++.+.++ ..+++ .||+
T Consensus       333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~lr~~~~gGa~l~~~~~~~~~~~~g-~~~~~-~YG~  410 (651)
T PLN02736        333 SGGLKERLFNAAYNAKKQALENGKNPSPMWDRLVFNKIKAKLGGRVRFMSSGASPLSPDVMEFLRICFG-GRVLE-GYGM  410 (651)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHhcCcEEEEEeCCCCCCHHHHHHHHHHhC-CCeEE-Eech
Confidence                                    00             011 47999999999999999999998887 78888 9999


Q ss_pred             cccccccccccCCCCCCCCCCccccCCCcEEEEEeCCCCCC---CCCCCceEEEEecCccchhhcCCcccccccccCCCe
Q 026609          124 TETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKP---LPPNQLGEIWLRGPNMMRGYYNNEQATKLTIDKKGW  200 (236)
Q Consensus       124 tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~---~~~g~~Gel~v~~~~~~~~~~~~~~~~~~~~~~~~~  200 (236)
                      ||++..++.....  ....+.+|+|+|+++++++|.++++.   ..++..|||+++|+.++.||+++++.+...|..+||
T Consensus       411 TE~~~~~~~~~~~--~~~~~~vG~p~pg~~v~i~d~~~~~~~~~~~~~~~GEl~vrgp~v~~GY~~~~~~t~~~~~~dgw  488 (651)
T PLN02736        411 TETSCVISGMDEG--DNLSGHVGSPNPACEVKLVDVPEMNYTSEDQPYPRGEICVRGPIIFKGYYKDEVQTREVIDEDGW  488 (651)
T ss_pred             HHhchheeccCCC--CCCCCccCCccCceEEEEEEccccCcccCCCCCCCceEEecCCccccccccCHHHHHhhhccCCC
Confidence            9998766543332  34567899999999999998544322   233457999999999999999999999998878999


Q ss_pred             EecCceEEEcCCCcEEEEcccCCceee-ccEEeecCC
Q 026609          201 VHTGDLGYFDGDGQLYVVDRIKELIKY-KGFQVTSNW  236 (236)
Q Consensus       201 ~~TgD~~~~~~~g~~~~~GR~~d~i~~-~G~~i~p~~  236 (236)
                      |+|||+|++|+||+++|.||+||+||+ +|++|+|+|
T Consensus       489 ~~TGDlg~~d~dG~l~i~GR~kd~ik~~~G~~V~p~e  525 (651)
T PLN02736        489 LHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYIAPEK  525 (651)
T ss_pred             eeccceEEEcCCCcEEEEEechhheEcCCCcEechHH
Confidence            999999999999999999999999997 799999975

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=100.00  E-value=2.9e-37  Score=286.47  Aligned_cols=229  Identities=31%  Similarity=0.455  Sum_probs=202.4

Q ss_pred             eeccCCCCcEEEEecChhhHHhHHHHHHHHhhcCcEEEEcC-CCCHHHHHHHHHhcCceEEEeChHHHHHHHhcCCcCCC
Q 026609            6 QETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKF   84 (236)
Q Consensus         6 ~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~   84 (236)
                      +.++..++|++++.+|++|..|+...++.++..|+++++.+ .+++..+++.++++++|.+.++|++++.+.+.......
T Consensus       816 ~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~g~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~  895 (1146)
T PRK08633        816 DVFNLRNDDVILSSLPFFHSFGLTVTLWLPLLEGIKVVYHPDPTDALGIAKLVAKHRATILLGTPTFLRLYLRNKKLHPL  895 (1146)
T ss_pred             HhcCCCCCCEEEEcCcHHHHHhHHHHHHHHHHCCCEEEEeCCCCCHHHHHHHHHHcCCeEEEecHHHHHHHHhccccCcc
Confidence            44567889999999999999999777889999999999876 47899999999999999999999999999887665666


Q ss_pred             CCCCceEEeecCCCCCHHHHHHHHHhCCCCceeeccccccccccccccccCCC--------CCCCCCCccccCCCcEEEE
Q 026609           85 DLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVGYGLTETSGIATMENSFA--------GSRNIGSAGALAPGVEALI  156 (236)
Q Consensus        85 ~l~~lr~i~~~G~~~~~~~~~~~~~~~~~~~v~~~~YG~tE~g~~~~~~~~~~--------~~~~~~~~g~p~~~~~~~~  156 (236)
                      +++++|.++++|+++++++.+.+++.++ .++.+ .||+||++.++.......        ...+...+|+|.|++++++
T Consensus       896 ~~~~lr~~~~gg~~~~~~~~~~~~~~~g-~~~~~-~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~p~~~~~v~i  973 (1146)
T PRK08633        896 MFASLRLVVAGAEKLKPEVADAFEEKFG-IRILE-GYGATETSPVASVNLPDVLAADFKRQTGSKEGSVGMPLPGVAVRI  973 (1146)
T ss_pred             cCCCeeeEEEcCCcCCHHHHHHHHHHhC-CCeec-ccccccCcceEEEecCcccccccccccCCCCCCccccCCCCEEEE
Confidence            7899999999999999999999999986 88988 999999987665432211        1234568999999999999


Q ss_pred             EeCCCCCCCCCCCceEEEEecCccchhhcCCcccccccccC---CCeEecCceEEEcCCCcEEEEcccCCceeeccEEee
Q 026609          157 VSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQATKLTIDK---KGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVT  233 (236)
Q Consensus       157 ~~~~~~~~~~~g~~Gel~v~~~~~~~~~~~~~~~~~~~~~~---~~~~~TgD~~~~~~~g~~~~~GR~~d~i~~~G~~i~  233 (236)
                      +|++++++++.|+.|||+++|+.++.||+++++.+...+..   ++||+|||++++|+||++++.||.||+||++|++|+
T Consensus       974 ~d~~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~gR~~d~i~~~G~~v~ 1053 (1146)
T PRK08633        974 VDPETFEELPPGEDGLILIGGPQVMKGYLGDPEKTAEVIKDIDGIGWYVTGDKGHLDEDGFLTITDRYSRFAKIGGEMVP 1053 (1146)
T ss_pred             EcCCCCccCCCCCceEEEEcCCCccccccCCccchHHHhhcCCCCCeEECCCEEEEcCCceEEEEecccchhhhCcEEEC
Confidence            99888999999999999999999999999999988777632   389999999999999999999999999999999999


Q ss_pred             cCC
Q 026609          234 SNW  236 (236)
Q Consensus       234 p~~  236 (236)
                      |.|
T Consensus      1054 ~~e 1056 (1146)
T PRK08633       1054 LGA 1056 (1146)
T ss_pred             HHH
Confidence            975

>PRK07529 AMP-binding domain protein; Validated

Probab=100.00  E-value=7.1e-37  Score=268.06  Aligned_cols=227  Identities=29%  Similarity=0.509  Sum_probs=193.9

Q ss_pred             eeeccCCCCcEEEEecChhhHHhHHHHHHHHhhcCcEEEEcCC--C-C---HHHHHHHHHhcCceEEEeChHHHHHHHhc
Q 026609            5 DQETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK--F-D---LEMFLRAIEKHRVTHIWVVPPLILALAKH   78 (236)
Q Consensus         5 ~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~--~-~---~~~~~~~i~~~~~t~~~~~P~~~~~l~~~   78 (236)
                      .+.++..++|++++.+|++|..++...++.++..|+++++.++  + +   ...+++.++++++|.+.++|+++..|++.
T Consensus       246 ~~~~~~~~~d~~l~~~pl~h~~~~~~~~~~~l~~G~~vv~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~  325 (632)
T PRK07529        246 ALLLGLGPGDTVFCGLPLFHVNALLVTGLAPLARGAHVVLATPQGYRGPGVIANFWKIVERYRINFLSGVPTVYAALLQV  325 (632)
T ss_pred             HHhcCCCCCCEEEEecCchhhhHHHHHHHHHHHCCCEEEecCccccCcchHHHHHHHHHHHhCCeEEEeHHHHHHHHHhC
Confidence            3445678899999999999999998889999999999999763  2 1   36899999999999999999999999887


Q ss_pred             CCcCCCCCCCceEEeecCCCCCHHHHHHHHHhCCCCceeeccccccccccccccccCCCCCCCCCCccccCCCcEEEEEe
Q 026609           79 GLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVS  158 (236)
Q Consensus        79 ~~~~~~~l~~lr~i~~~G~~~~~~~~~~~~~~~~~~~v~~~~YG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~  158 (236)
                      +. ...+++++|.+++||+++++++.++|.+.++ ..+++ .||+||++.++..... ......+.+|.|+|+..++++.
T Consensus       326 ~~-~~~~~~slr~v~~gg~~l~~~l~~~~~~~~g-~~l~~-~YG~TE~~~~~~~~~~-~~~~~~~svG~~~p~~~v~i~~  401 (632)
T PRK07529        326 PV-DGHDISSLRYALCGAAPLPVEVFRRFEAATG-VRIVE-GYGLTEATCVSSVNPP-DGERRIGSVGLRLPYQRVRVVI  401 (632)
T ss_pred             cc-cCCCccceEEEEEcCCCCCHHHHHHHHHHhC-CcEee-eecccccCcccccCCc-cccccCCCcccccCCceEEEEE
Confidence            64 3347889999999999999999999999986 88999 9999999877654432 2234567899999999998863


Q ss_pred             C-CCC---CCCCCCCceEEEEecCccchhhcCCcccccccccCCCeEecCceEEEcCCCcEEEEcccCCceeeccEEeec
Q 026609          159 V-DTQ---KPLPPNQLGEIWLRGPNMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTS  234 (236)
Q Consensus       159 ~-~~~---~~~~~g~~Gel~v~~~~~~~~~~~~~~~~~~~~~~~~~~~TgD~~~~~~~g~~~~~GR~~d~i~~~G~~i~p  234 (236)
                      . +++   ++++.|+.|||+|+|+.++.+|++++ .+...+..++||+|||++++++||++++.||.||+||++|++|+|
T Consensus       402 ~d~~g~~~~~~~~g~~Gel~v~gp~v~~GY~~~~-~~~~~~~~~gw~~TGDlg~~d~dG~l~i~GR~~d~i~~~G~~i~p  480 (632)
T PRK07529        402 LDDAGRYLRDCAVDEVGVLCIAGPNVFSGYLEAA-HNKGLWLEDGWLNTGDLGRIDADGYFWLTGRAKDLIIRGGHNIDP  480 (632)
T ss_pred             cCCCCcccccCCCCCceEEEEECCCccccccCCc-cccccccCCCceEcCcEEEEcCCceEEEEecccCEEEeCCEEECH
Confidence            2 345   78999999999999999999999765 455555578999999999999999999999999999999999999


Q ss_pred             CC
Q 026609          235 NW  236 (236)
Q Consensus       235 ~~  236 (236)
                      .|
T Consensus       481 ~e  482 (632)
T PRK07529        481 AA  482 (632)
T ss_pred             HH
Confidence            75

>PRK06145 acyl-CoA synthetase; Validated

Probab=100.00  E-value=8e-37  Score=261.00  Aligned_cols=227  Identities=31%  Similarity=0.482  Sum_probs=202.3

Q ss_pred             eccCCCCcEEEEecChhhHHhHHHHHHHHhhcCcEEEEcCCCCHHHHHHHHHhcCceEEEeChHHHHHHHhcCCcCCCCC
Q 026609            7 ETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDL   86 (236)
Q Consensus         7 ~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l   86 (236)
                      .++...+|+++...|++|.+++....+.+++.|+++++.+.+++..+++.++++++|.+.++|+++..++........++
T Consensus       184 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~ll~~~~~~~~~~  263 (497)
T PRK06145        184 ALGLTASERLLVVGPLYHVGAFDLPGIAVLWVGGTLRIHREFDPEAVLAAIERHRLTCAWMAPVMLSRVLTVPDRDRFDL  263 (497)
T ss_pred             hhCCCCCcEEEEecCchhHhHHHHHHHHHHhccCEEEECCcCCHHHHHHHHHHhCCeEEEehHHHHHHHHcCCCcccccc
Confidence            45678889999999999999997777888999999999999999999999999999999999999999988766566677


Q ss_pred             CCceEEeecCCCCCHHHHHHHHHhCCCCceeeccccccccccccccccCCCCCCCCCCccccCCCcEEEEEeCCCCCCCC
Q 026609           87 SSLKLVGSGAAPLGKELMEECAKNVPSATVIQVGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLP  166 (236)
Q Consensus        87 ~~lr~i~~~G~~~~~~~~~~~~~~~~~~~v~~~~YG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~  166 (236)
                      +++|.++++|+++++++.+.+.+.+++..+++ .||+||++..+............+.+|+|+++++++++| +++++++
T Consensus       264 ~~l~~~~~gG~~~~~~~~~~~~~~~~~~~v~~-~YG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~-~~~~~~~  341 (497)
T PRK06145        264 DSLAWCIGGGEKTPESRIRDFTRVFTRARYID-AYGLTETCSGDTLMEAGREIEKIGSTGRALAHVEIRIAD-GAGRWLP  341 (497)
T ss_pred             ccceEEEecCCCCCHHHHHHHHHHcCCCceEE-eecCcccCCcceeccCccccccCCCcccCCCCceEEEEC-CCCCCCC
Confidence            89999999999999999999999998788888 999999987655433222233456789999999999999 5788999


Q ss_pred             CCCceEEEEecCccchhhcCCcccccccccCCCeEecCceEEEcCCCcEEEEcccCCceeeccEEeecCC
Q 026609          167 PNQLGEIWLRGPNMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSNW  236 (236)
Q Consensus       167 ~g~~Gel~v~~~~~~~~~~~~~~~~~~~~~~~~~~~TgD~~~~~~~g~~~~~GR~~d~i~~~G~~i~p~~  236 (236)
                      .|+.|||+++|+.++.||+++++.+...| .++||+|||+++++++|++++.||+||+||++|++|+|+|
T Consensus       342 ~~~~Gel~v~g~~~~~Gy~~~~~~~~~~~-~~~~~~TGDl~~~~~~g~l~~~GR~~~~i~~~G~~v~~~~  410 (497)
T PRK06145        342 PNMKGEICMRGPKVTKGYWKDPEKTAEAF-YGDWFRSGDVGYLDEEGFLYLTDRKKDMIISGGENIASSE  410 (497)
T ss_pred             CCCceEEEEECcchhhhhcCChHHHHHHH-hCCCeeccceEEEcCCCcEEEeccccceEEeCCeEECHHH
Confidence            99999999999999999999999888877 6789999999999999999999999999999999999864

>PRK07656 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=7.1e-37  Score=262.12  Aligned_cols=229  Identities=35%  Similarity=0.584  Sum_probs=204.9

Q ss_pred             eeccCCCCcEEEEecChhhHHhHHHHHHHHhhcCcEEEEcCCCCHHHHHHHHHhcCceEEEeChHHHHHHHhcCCcCCCC
Q 026609            6 QETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFD   85 (236)
Q Consensus         6 ~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~   85 (236)
                      ..++..++|++++.+|++|.+++...++.++..|+++++.+.+++..+++.++++++|.+.++|+++..|.+........
T Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~  279 (513)
T PRK07656        200 EYLGLTEGDRYLAANPFFHVFGYKAGVNAPLMRGATILPLPVFDPDEVFRLIETERITVLPGPPTMYNSLLQHPDRSAED  279 (513)
T ss_pred             HhhCCCCCCeEEEccchHHHHHHHHHHHHHHHcCceEEecCcCCHHHHHHHHHHhCCeEEechHHHHHHHHcCCCcCCCC
Confidence            45677889999999999999999888999999999999988889999999999999999999999999999987766668


Q ss_pred             CCCceEEeecCCCCCHHHHHHHHHhCCCCceeeccccccccccccccccCCC-CCCCCCCccccCCCcEEEEEeCCCCCC
Q 026609           86 LSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVGYGLTETSGIATMENSFA-GSRNIGSAGALAPGVEALIVSVDTQKP  164 (236)
Q Consensus        86 l~~lr~i~~~G~~~~~~~~~~~~~~~~~~~v~~~~YG~tE~g~~~~~~~~~~-~~~~~~~~g~p~~~~~~~~~~~~~~~~  164 (236)
                      ++++|.++++|+++++++.+.|.+.++...+++ .||+||++.+...+.... .......+|.|.++++++++| +.+++
T Consensus       280 ~~~l~~v~~~g~~~~~~~~~~~~~~~~~~~~~~-~YG~tE~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~i~d-~~~~~  357 (513)
T PRK07656        280 LSSLRLAVTGAASMPVALLERFESELGVDIVLT-GYGLSEASGVTTFNRLDDDRKTVAGTIGTAIAGVENKIVN-ELGEE  357 (513)
T ss_pred             ccceeeEEecCCCCCHHHHHHHHHHcCCCceEe-EEccccCCCceeecCccccccccCCCccccCCCcEEEEEC-CCCCC
Confidence            889999999999999999999999998337888 999999987776544322 112257899999999999999 57899


Q ss_pred             CCCCCceEEEEecCccchhhcCCcccccccccCCCeEecCceEEEcCCCcEEEEcccCCceeeccEEeecCC
Q 026609          165 LPPNQLGEIWLRGPNMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSNW  236 (236)
Q Consensus       165 ~~~g~~Gel~v~~~~~~~~~~~~~~~~~~~~~~~~~~~TgD~~~~~~~g~~~~~GR~~d~i~~~G~~i~p~~  236 (236)
                      ++.|+.|||+++++.++.+|++++..+...+..++||+|||+++++++|.+++.||.||+++++|.+++|.|
T Consensus       358 ~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~tGDl~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~  429 (513)
T PRK07656        358 VPVGEVGELLVRGPNVMKGYYDDPEATAAAIDADGWLHTGDLGRLDEEGYLYIVDRKKDMFIVGGFNVYPAE  429 (513)
T ss_pred             CCCCCceEEEEEcchhhhhhcCCHHHHhhhhccCCceeccceEEEcCCeeEEEEecccceEEeCCEEeCHHH
Confidence            999999999999999999999999888887766899999999999999999999999999999999999864

>PLN03051 acyl-activating enzyme; Provisional

Probab=100.00  E-value=5.2e-37  Score=262.32  Aligned_cols=225  Identities=17%  Similarity=0.167  Sum_probs=183.5

Q ss_pred             eccCCCCcEEEEecChhhHHhHHHHHHHHhhcCcEEEEcCC-CCHHHHHHHHHhcCceEEEeChHHHHHHHhcCC--cCC
Q 026609            7 ETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK-FDLEMFLRAIEKHRVTHIWVVPPLILALAKHGL--VKK   83 (236)
Q Consensus         7 ~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~--~~~   83 (236)
                      .+++.++|++++.+|++|..++ ..++.+++.|+++++.+. +++..+++.++++++|++.++|+++..|++...  ...
T Consensus       154 ~~~~~~~d~~l~~~pl~h~~g~-~~~~~~l~~G~t~v~~~~~~~~~~~~~~i~~~~vt~~~~vP~~~~~l~~~~~~~~~~  232 (499)
T PLN03051        154 HMDIQPGDVVCWPTNLGWMMGP-WLLYSAFLNGATLALYGGAPLGRGFGKFVQDAGVTVLGLVPSIVKAWRHTGAFAMEG  232 (499)
T ss_pred             hcCCCCCCEEEEccCcceeeeh-HHHHHHHHcCCEEEecCCCCCcHHHHHHHHHhCCcEEEeCHHHHHHHHhcCcccccc
Confidence            4567889999999999999998 578889999999999874 788999999999999999999999999987653  334


Q ss_pred             CCCCCceEEeecCCCCCHHHHHHHHHhCC-CCceeeccccccccccccccccCCCCCCCCCCccccCCCcEEEEEeCCCC
Q 026609           84 FDLSSLKLVGSGAAPLGKELMEECAKNVP-SATVIQVGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQ  162 (236)
Q Consensus        84 ~~l~~lr~i~~~G~~~~~~~~~~~~~~~~-~~~v~~~~YG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~  162 (236)
                      .+++++|.++++|+++++++.+++.+.++ +..+.+ .||+||++......... .....+++|+|.++++++++| +++
T Consensus       233 ~~~~~Lr~i~~gG~~~~~~~~~~~~~~~~~~~~~~~-~YG~TE~~~~~~~~~~~-~~~~~~~~G~p~~~~~~~ivd-~~g  309 (499)
T PLN03051        233 LDWSKLRVFASTGEASAVDDVLWLSSVRGYYKPVIE-YCGGTELASGYISSTLL-QPQAPGAFSTASLGTRFVLLN-DNG  309 (499)
T ss_pred             CCchhheEEEecCCCCCHHHHHHHHHhccccceeEe-eeccccccceeeccccc-CCCCCccccCCCCCceEEEEC-CCC
Confidence            56789999999999999999988777432 256777 99999986543322111 123456899999999999999 578


Q ss_pred             CCCCCC--CceEEEEecCcc--chhhcCCccccccccc--------CCCeEecCceEEEcCCCcEEEEcccCCceeeccE
Q 026609          163 KPLPPN--QLGEIWLRGPNM--MRGYYNNEQATKLTID--------KKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGF  230 (236)
Q Consensus       163 ~~~~~g--~~Gel~v~~~~~--~~~~~~~~~~~~~~~~--------~~~~~~TgD~~~~~~~g~~~~~GR~~d~i~~~G~  230 (236)
                      ++++.|  +.|||+++|+.+  +.+|++++. +...++        ...||+|||++++|+||+++++||+||+||++|+
T Consensus       310 ~~~~~g~~~~Gel~v~g~~~~~~~gy~~~~~-~~~~~~g~~~~~~~~~~~~~TGDlg~~d~dG~l~~~gR~~d~ik~~G~  388 (499)
T PLN03051        310 VPYPDDQPCVGEVALAPPMLGASDRLLNADH-DKVYYKGMPMYGSKGMPLRRHGDIMKRTPGGYFCVQGRADDTMNLGGI  388 (499)
T ss_pred             CCCCCCCCcceEEEEecCcCCCCccccCCcc-cceeeecCCccccCCcceeecCCeEEECCCCcEEEEeccCCEEeeCCE
Confidence            899988  479999999976  578997643 222221        1127999999999999999999999999999999


Q ss_pred             EeecCC
Q 026609          231 QVTSNW  236 (236)
Q Consensus       231 ~i~p~~  236 (236)
                      ||+|.|
T Consensus       389 ~v~p~E  394 (499)
T PLN03051        389 KTSSVE  394 (499)
T ss_pred             ECCHHH
Confidence            999976

>TIGR03208 cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase

Probab=100.00  E-value=1.2e-36  Score=262.27  Aligned_cols=225  Identities=21%  Similarity=0.287  Sum_probs=197.3

Q ss_pred             eccCCCCcEEEEecChhhHHhHHHHHHHHhhcCcEEEEcCCCCHHHHHHHHHhcCceEEEeChHHHHHHHhcCCcCCCCC
Q 026609            7 ETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDL   86 (236)
Q Consensus         7 ~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l   86 (236)
                      .++..++|++++.+|++|..|+...++.+++.|+++++.+.+++..+++.+++++++.+.++|+++..+.+........+
T Consensus       230 ~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~l~~~~vt~~~~~p~~~~~l~~~~~~~~~~~  309 (538)
T TIGR03208       230 RLELGGGDVILMASPMAHQTGFMYGLMMPLILNATAVLQDIWNPARAAELIRETGVTFTMASTPFLTDLCRAVKESGAPV  309 (538)
T ss_pred             hcCCCCCCeEEEeCCchhHHHHHHHHHHHHHcCCEEEecCccCHHHHHHHHHHhCCeEEecCHHHHHHHHhchhccCCCC
Confidence            45677889999999999999987888999999999999988999999999999999999999999999887654445577


Q ss_pred             CCceEEeecCCCCCHHHHHHHHHhCCCCceeeccccccccccccccccCCCCCCCCCCccccCCCcEEEEEeCCCCCCCC
Q 026609           87 SSLKLVGSGAAPLGKELMEECAKNVPSATVIQVGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLP  166 (236)
Q Consensus        87 ~~lr~i~~~G~~~~~~~~~~~~~~~~~~~v~~~~YG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~  166 (236)
                      +++|.++++|+++++++.+++.+.++ ..+++ .||+||++.+...............+|+|.++++++++| +++++++
T Consensus       310 ~~l~~~~~gG~~~~~~~~~~~~~~~~-~~~~~-~YG~tE~~~~~~~~~~~~~~~~~~~~G~~~~g~~v~i~~-~~~~~~~  386 (538)
T TIGR03208       310 PSLFTFLCAGAPIPGILVERAWELLG-ALIVS-AWGMTENGAVTVTEPDDALEKASTTDGRPLPGVEVKVID-ANGAKLS  386 (538)
T ss_pred             CcceEEEEcCCCCCHHHHHHHHHHcC-CeEEe-eeccCcCCCccccCcccchhhccCcccccCCCCEEEEEC-CCCCCCc
Confidence            89999999999999999999999886 78888 999999987765443221122245689999999999999 5788999


Q ss_pred             CCCceEEEEecCccchhhcCCcccccccccCCCeEecCceEEEcCCCcEEEEcccCCceeeccEEeecCC
Q 026609          167 PNQLGEIWLRGPNMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSNW  236 (236)
Q Consensus       167 ~g~~Gel~v~~~~~~~~~~~~~~~~~~~~~~~~~~~TgD~~~~~~~g~~~~~GR~~d~i~~~G~~i~p~~  236 (236)
                      .|+.|||+++++.++.+|+++++.+.  ...++||+|||+++++++|.+++.||.||+|+++|++|+|.|
T Consensus       387 ~g~~Gel~v~g~~~~~gy~~~~~~~~--~~~~~~~~TGD~~~~~~~g~l~~~gR~~~~i~~~G~~v~p~e  454 (538)
T TIGR03208       387 QGETGRLLVRGCSNFGGYLKRPHLNS--TDAEGWFDTGDLAFQDAEGYIRINGRSKDVIIRGGENIPVVE  454 (538)
T ss_pred             CCCCcEEEEecCcccccccCCccccc--ccCCCceeccceEEECCCCcEEEEeccCceEEECCEEECHHH
Confidence            99999999999999999999987764  346899999999999999999999999999999999999975

Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris.

>PRK08315 AMP-binding domain protein; Validated

Probab=100.00  E-value=1.3e-36  Score=263.24  Aligned_cols=230  Identities=29%  Similarity=0.475  Sum_probs=203.9

Q ss_pred             eeccCCCCcEEEEecChhhHHhHHHHHHHHhhcCcEEEE-cCCCCHHHHHHHHHhcCceEEEeChHHHHHHHhcCCcCCC
Q 026609            6 QETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIIL-MAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKF   84 (236)
Q Consensus         6 ~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~-~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~   84 (236)
                      ..+++.++|+++..+|++|..|+...++.++..|+++++ .+.+++..+++.++++++|.++++|+++..++........
T Consensus       233 ~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~~~~~~~~~~~  312 (559)
T PRK08315        233 EAMKLTEEDRLCIPVPLYHCFGMVLGNLACVTHGATMVYPGEGFDPLATLAAVEEERCTALYGVPTMFIAELDHPDFARF  312 (559)
T ss_pred             HhcCCCCCceEEEecCcHHHHHHHHHHHHHHhccceEEEecCCCCHHHHHHHHHHcCCeEEecchHHHHHHHhCcccCCC
Confidence            456788899999999999999998889999999999995 4468999999999999999999999999999887665666


Q ss_pred             CCCCceEEeecCCCCCHHHHHHHHHhCCCCceeeccccccccccccccccCCC-CCCCCCCccccCCCcEEEEEeCCCCC
Q 026609           85 DLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVGYGLTETSGIATMENSFA-GSRNIGSAGALAPGVEALIVSVDTQK  163 (236)
Q Consensus        85 ~l~~lr~i~~~G~~~~~~~~~~~~~~~~~~~v~~~~YG~tE~g~~~~~~~~~~-~~~~~~~~g~p~~~~~~~~~~~~~~~  163 (236)
                      .++++|.++++|+++++++.+.+.+.++...+++ .||+||++.++....... .......+|+|++++.++++|+++++
T Consensus       313 ~~~~lr~~~~~G~~~~~~~~~~~~~~~~~~~l~~-~YG~tE~~~~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d~~~~~  391 (559)
T PRK08315        313 DLSSLRTGIMAGSPCPIEVMKRVIDKMHMSEVTI-AYGMTETSPVSTQTRTDDPLEKRVTTVGRALPHLEVKIVDPETGE  391 (559)
T ss_pred             CchhhheeEecCCCCCHHHHHHHHHHcCCcceeE-EEcccccccceeecCcccchhhccCCCCccCCCcEEEEEcCccCC
Confidence            7889999999999999999999999998566888 999999988766543322 12346789999999999999977699


Q ss_pred             CCCCCCceEEEEecCccchhhcCCcccccccccCCCeEecCceEEEcCCCcEEEEcccCCceeeccEEeecCC
Q 026609          164 PLPPNQLGEIWLRGPNMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSNW  236 (236)
Q Consensus       164 ~~~~g~~Gel~v~~~~~~~~~~~~~~~~~~~~~~~~~~~TgD~~~~~~~g~~~~~GR~~d~i~~~G~~i~p~~  236 (236)
                      +++.|+.|||+++++.++.+|++++..+...+..++||+|||+++++++|.+++.||.||+++++|++|+|.|
T Consensus       392 ~~~~g~~GEl~v~g~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~dg~~~~~GR~d~~i~~~G~~v~~~e  464 (559)
T PRK08315        392 TVPRGEQGELCTRGYSVMKGYWNDPEKTAEAIDADGWMHTGDLAVMDEEGYVNIVGRIKDMIIRGGENIYPRE  464 (559)
T ss_pred             cCCCCCceEEEEECchhhhhhcCChhHHhhcCCCCCCEEccceEEEcCCceEEEEeeccceEEECCEEEcHHH
Confidence            9999999999999999999999999888877767899999999999999999999999999999999999864

>PRK08316 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.1e-36  Score=261.46  Aligned_cols=227  Identities=33%  Similarity=0.492  Sum_probs=204.3

Q ss_pred             eccCCCCcEEEEecChhhHHhHHHHHHHHhhcCcEEEEcCCCCHHHHHHHHHhcCceEEEeChHHHHHHHhcCCcCCCCC
Q 026609            7 ETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDL   86 (236)
Q Consensus         7 ~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l   86 (236)
                      ..++.++|++++.+|++|.+++...++.++..|+++++.+.+++..+++.++++++|.+.++|+++..+.+.......++
T Consensus       206 ~~~~~~~~~~~~~~p~~h~~g~~~~~~~~~~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~  285 (523)
T PRK08316        206 AGDMSADDIPLHALPLYHCAQLDVFLGPYLYVGATNVILDAPDPELILRTIEAERITSFFAPPTVWISLLRHPDFDTRDL  285 (523)
T ss_pred             HhCCCCCceEEEccCCchhhhHHHHHHHHHhcCceEEEecCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHcCcccccCCc
Confidence            45678889999999999999997677788999999999988899999999999999999999999999998876666778


Q ss_pred             CCceEEeecCCCCCHHHHHHHHHhCCCCceeeccccccccccccccccCCCCCCCCCCccccCCCcEEEEEeCCCCCCCC
Q 026609           87 SSLKLVGSGAAPLGKELMEECAKNVPSATVIQVGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLP  166 (236)
Q Consensus        87 ~~lr~i~~~G~~~~~~~~~~~~~~~~~~~v~~~~YG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~  166 (236)
                      +++|.++++|+.++.++.+.+++.+++..+++ .||+||++.++............+.+|+|+++++++++| +++++++
T Consensus       286 ~~l~~~~~gg~~~~~~~~~~~~~~~~~~~~~~-~YG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~-~~~~~~~  363 (523)
T PRK08316        286 SSLRKGYYGASIMPVEVLKELRERLPGLRFYN-CYGQTEIAPLATVLGPEEHLRRPGSAGRPVLNVETRVVD-DDGNDVA  363 (523)
T ss_pred             ccceEEEEcCCcCCHHHHHHHHHHcCCCceee-eecccccCccccccCccccccccCCcccCCCCcEEEEEc-CCCCCCC
Confidence            89999999999999999999999987688888 999999998776644333344567899999999999999 5689999


Q ss_pred             CCCceEEEEecCccchhhcCCcccccccccCCCeEecCceEEEcCCCcEEEEcccCCceeeccEEeecCC
Q 026609          167 PNQLGEIWLRGPNMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSNW  236 (236)
Q Consensus       167 ~g~~Gel~v~~~~~~~~~~~~~~~~~~~~~~~~~~~TgD~~~~~~~g~~~~~GR~~d~i~~~G~~i~p~~  236 (236)
                      .|+.|||+++++.++.+|+++++.+...| .++||+|||+++++++|.+++.||.||+|+++|++|+|.|
T Consensus       364 ~g~~Gei~v~~~~~~~~y~~~~~~~~~~~-~~~~~~TGDl~~~~~~g~l~i~gR~~~~i~~~G~~i~~~~  432 (523)
T PRK08316        364 PGEVGEIVHRSPQLMLGYWDDPEKTAEAF-RGGWFHSGDLGVMDEEGYITVVDRKKDMIKTGGENVASRE  432 (523)
T ss_pred             CCCcceEEEECCchhhhhcCCHHHHHHHh-hCCCeeccceEEEcCCceEEEecccccEEEeCCeEECHHH
Confidence            99999999999999999999998888777 6899999999999999999999999999999999999864

>PRK04319 acetyl-CoA synthetase; Provisional

Probab=100.00  E-value=1.6e-36  Score=263.29  Aligned_cols=226  Identities=30%  Similarity=0.427  Sum_probs=198.4

Q ss_pred             eeccCCCCcEEEEecChhhHHhHHHHHHHHhhcCcEEEEcC-CCCHHHHHHHHHhcCceEEEeChHHHHHHHhcCC--cC
Q 026609            6 QETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGL--VK   82 (236)
Q Consensus         6 ~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~--~~   82 (236)
                      ..+++.++|++++..|++|.+|+...++.++..|+++++.+ .+++..+++.++++++|+++++|++++.|++...  ..
T Consensus       239 ~~~~~~~~d~~~~~~~~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~  318 (570)
T PRK04319        239 YVLDLHEDDVYWCTADPGWVTGTSYGIFAPWLNGATNVIDGGRFSPERWYRILEDYKVTVWYTAPTAIRMLMGAGDDLVK  318 (570)
T ss_pred             HhcCCCCCceEEecCChHHhhCchHHHHHHHhcCceEEEECCCCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhcCCcccc
Confidence            34667889999999999999998788999999999999876 5899999999999999999999999999987643  23


Q ss_pred             CCCCCCceEEeecCCCCCHHHHHHHHHhCCCCceeeccccccccccccccccCCCCCCCCCCccccCCCcEEEEEeCCCC
Q 026609           83 KFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQ  162 (236)
Q Consensus        83 ~~~l~~lr~i~~~G~~~~~~~~~~~~~~~~~~~v~~~~YG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~  162 (236)
                      ..+++++|.++++|+++++++.+++.+.++ ..+.+ .||+||++.++...... ....++.+|+|+++++++++| +++
T Consensus       319 ~~~~~~lr~~~~gG~~l~~~~~~~~~~~~g-~~i~~-~YG~tE~~~~~~~~~~~-~~~~~~~~G~p~~g~~~~i~d-~~~  394 (570)
T PRK04319        319 KYDLSSLRHILSVGEPLNPEVVRWGMKVFG-LPIHD-NWWMTETGGIMIANYPA-MDIKPGSMGKPLPGIEAAIVD-DQG  394 (570)
T ss_pred             cCCcccceEEEEcccCCCHHHHHHHHHHhC-CCeEe-ceeecccCCEEEecCCC-CCCCCCcCcCCCCCCEEEEEC-CCC
Confidence            446789999999999999999999999887 78888 99999998765432221 234567899999999999999 577


Q ss_pred             CCCCCCCceEEEEec--CccchhhcCCcccccccccCCCeEecCceEEEcCCCcEEEEcccCCceeeccEEeecCC
Q 026609          163 KPLPPNQLGEIWLRG--PNMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSNW  236 (236)
Q Consensus       163 ~~~~~g~~Gel~v~~--~~~~~~~~~~~~~~~~~~~~~~~~~TgD~~~~~~~g~~~~~GR~~d~i~~~G~~i~p~~  236 (236)
                      .+++.|+.|||++++  +.++.+|+++++.+...+ .+|||+|||+++++++|++++.||+||+|+++|++|+|.|
T Consensus       395 ~~~~~g~~Gel~i~~~~~~~~~GY~~~~~~~~~~~-~~gw~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~i~p~e  469 (570)
T PRK04319        395 NELPPNRMGNLAIKKGWPSMMRGIWNNPEKYESYF-AGDWYVSGDSAYMDEDGYFWFQGRVDDVIKTSGERVGPFE  469 (570)
T ss_pred             CCCCCCCceEEEEcCCCChHHhHhcCCHHHhhhhh-cCCceEeCcEEEECCCeeEEEEecCCCEEEECCEEECHHH
Confidence            888999999999987  889999999999988887 5889999999999999999999999999999999999975

>TIGR02275 DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase

Probab=100.00  E-value=3e-36  Score=259.26  Aligned_cols=227  Identities=26%  Similarity=0.380  Sum_probs=198.6

Q ss_pred             eeccCCCCcEEEEecChhhHHhHHH-HHHHHhhcCcEEEEcCCCCHHHHHHHHHhcCceEEEeChHHHHHHHhcCCcCCC
Q 026609            6 QETAGELDYVFLCVLPLFHVFGLAV-ITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKF   84 (236)
Q Consensus         6 ~~~~~~~~d~~l~~~p~~~~~g~~~-~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~   84 (236)
                      ......++|++++.+|++|.+++.. .++.++..|+++++.+.+++..+++.+++++++++.++|+++..+++...+...
T Consensus       217 ~~~~~~~~d~~l~~~P~~h~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~  296 (527)
T TIGR02275       217 EICWLTQQTRYLCALPAAHNYPLSSPGALGVFYAGGCVVLAPDPSPTDCFPLIERHKVTVTALVPPAVALWMQAASKSRY  296 (527)
T ss_pred             hhcCCCcCCEEEECCChHhhhhhhHHHHHHHHhcCCeEEECCCCCHHHHHHHHHHhCCeEEEecHHHHHHHHhCccccCC
Confidence            3456778899999999999999854 478899999999998888999999999999999999999999999887766667


Q ss_pred             CCCCceEEeecCCCCCHHHHHHHHHhCCCCceeeccccccccccccccccCCCCCCCCCCccccCC-CcEEEEEeCCCCC
Q 026609           85 DLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVGYGLTETSGIATMENSFAGSRNIGSAGALAP-GVEALIVSVDTQK  163 (236)
Q Consensus        85 ~l~~lr~i~~~G~~~~~~~~~~~~~~~~~~~v~~~~YG~tE~g~~~~~~~~~~~~~~~~~~g~p~~-~~~~~~~~~~~~~  163 (236)
                      .++++|.++++|+++++++.+++.+.++ ..+.+ .||+||++...... ..........+|+|++ +..++++| ++++
T Consensus       297 ~~~~lr~~~~gG~~l~~~~~~~~~~~~g-~~~~~-~YG~tE~~~~~~~~-~~~~~~~~~~~G~~~~~~~~v~i~d-~~g~  372 (527)
T TIGR02275       297 DLSSLKLLQVGGAKFSEAAARRVPAVFG-CQLQQ-VFGMAEGLVNYTRL-DDPAEIIFTTQGRPMSPDDEVRVVD-DHGN  372 (527)
T ss_pred             CccceEEEEEcCCCCCHHHHHHHHHHhC-CeEEe-eeccCccCccccCC-CCccccccccCCCCCCCCceEEEEC-CCCC
Confidence            7889999999999999999999999987 88988 99999965433221 1111234467899994 78999999 5789


Q ss_pred             CCCCCCceEEEEecCccchhhcCCcccccccccCCCeEecCceEEEcCCCcEEEEcccCCceeeccEEeecCC
Q 026609          164 PLPPNQLGEIWLRGPNMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSNW  236 (236)
Q Consensus       164 ~~~~g~~Gel~v~~~~~~~~~~~~~~~~~~~~~~~~~~~TgD~~~~~~~g~~~~~GR~~d~i~~~G~~i~p~~  236 (236)
                      +++.|+.|||+++|+.++.+|+++++.+...+..+|||+|||+++++++|++++.||.||+|+++|++|+|.|
T Consensus       373 ~~~~g~~Gei~v~g~~~~~gY~~~~~~~~~~~~~dg~~~TGDl~~~~~~g~l~~~gR~~d~i~~~G~~v~~~e  445 (527)
T TIGR02275       373 PVAPGETGMLLTRGPYTFRGYYKAPEHNAAAFDAEGFYYTGDLVRLTPEGYIVVVGRAKDQINRGGEKIAAEE  445 (527)
T ss_pred             CCCCCCceEEEecCCccchhhcCChhHhHhhcCcCCCEEcCceEEEcCCccEEEEecccceeecCCEEECHHH
Confidence            9999999999999999999999999999888878899999999999999999999999999999999999865

Proteins in this family belong to the AMP-binding enzyme family (pfam00501). Members activate 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate; many are involved in synthesis of siderophores such as enterobactin, vibriobactin, vulnibactin, etc. The most closely related proteine believed to differ in function activates salicylate rather than DHB.

>PRK12583 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=4e-36  Score=260.07  Aligned_cols=229  Identities=31%  Similarity=0.510  Sum_probs=202.6

Q ss_pred             eeccCCCCcEEEEecChhhHHhHHHHHHHHhhcCcEEEEcC-CCCHHHHHHHHHhcCceEEEeChHHHHHHHhcCCcCCC
Q 026609            6 QETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKF   84 (236)
Q Consensus         6 ~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~   84 (236)
                      ..++..++|++++.+|++|.+|....++.++..|+++++.. .+++..+++.++++++|.+.++|+++..+++.......
T Consensus       235 ~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~v~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~  314 (558)
T PRK12583        235 ESLGLTEHDRLCVPVPLYHCFGMVLANLGCMTVGACLVYPNEAFDPLATLQAVEEERCTALYGVPTMFIAELDHPQRGNF  314 (558)
T ss_pred             HHhCCCCCCeEEEecCchhhhhHHHHHHHHHhcCceEEeecCCCCHHHHHHHHHHcCCeEEeccHHHHHHHHccccccCC
Confidence            34567889999999999999999888999999999999754 57899999999999999999999999988877655666


Q ss_pred             CCCCceEEeecCCCCCHHHHHHHHHhCCCCceeeccccccccccccccccCCC-CCCCCCCccccCCCcEEEEEeCCCCC
Q 026609           85 DLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVGYGLTETSGIATMENSFA-GSRNIGSAGALAPGVEALIVSVDTQK  163 (236)
Q Consensus        85 ~l~~lr~i~~~G~~~~~~~~~~~~~~~~~~~v~~~~YG~tE~g~~~~~~~~~~-~~~~~~~~g~p~~~~~~~~~~~~~~~  163 (236)
                      +++++|.++++|+++++++.+++.+.++...+.+ .||+||++.++....... .......+|+|.+++.++++|++ ++
T Consensus       315 ~~~~lr~i~~~G~~~~~~~~~~~~~~~~~~~i~~-~YG~tE~~~~~~~~~~~~~~~~~~~~vG~p~~~~~~~i~d~~-~~  392 (558)
T PRK12583        315 DLSSLRTGIMAGAPCPIEVMRRVMDEMHMAEVQI-AYGMTETSPVSLQTTAADDLERRVETVGRTQPHLEVKVVDPD-GA  392 (558)
T ss_pred             CchhheEEEecCCCCCHHHHHHHHHHcCCcceec-cccccccccceeccCcccccccccCCCCccCCCCeEEEECCC-CC
Confidence            7899999999999999999999999998667887 999999998776543221 13345788999999999999965 89


Q ss_pred             CCCCCCceEEEEecCccchhhcCCcccccccccCCCeEecCceEEEcCCCcEEEEcccCCceeeccEEeecCC
Q 026609          164 PLPPNQLGEIWLRGPNMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSNW  236 (236)
Q Consensus       164 ~~~~g~~Gel~v~~~~~~~~~~~~~~~~~~~~~~~~~~~TgD~~~~~~~g~~~~~GR~~d~i~~~G~~i~p~~  236 (236)
                      +++.|+.|||+++++.++.+|++++..+...+..++||+|||+++++++|++++.||.||+|+++|++|+|.|
T Consensus       393 ~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~TGDl~~~~~dg~l~i~GR~~~~i~~~G~~v~~~~  465 (558)
T PRK12583        393 TVPRGEIGELCTRGYSVMKGYWNNPEATAESIDEDGWMHTGDLATMDEQGYVRIVGRSKDMIIRGGENIYPRE  465 (558)
T ss_pred             CCCCCCeeEEEEEeCccchhhcCChHHHHhhcCCCCCeeccceEEECCCccEEEEecccceeEECCEEeCHHH
Confidence            9999999999999999999999999988887767899999999999999999999999999999999999864

>PLN02861 long-chain-fatty-acid-CoA ligase

Probab=100.00  E-value=1.2e-36  Score=267.59  Aligned_cols=221  Identities=27%  Similarity=0.424  Sum_probs=180.3

Q ss_pred             CCCCcEEEEecChhhHHhHHHHHHHHhhcCcEEEEcCCCCHHHHHHHHHhcCceEEEeChHHHHHHHhcC----------
Q 026609           10 GELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHG----------   79 (236)
Q Consensus        10 ~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~----------   79 (236)
                      ..++|++++.+|++|.++... .+.+++.|+++++.+ +++..+++.++++++|+++++|++++.|.+..          
T Consensus       263 ~~~~d~~l~~lPl~H~~~~~~-~~~~l~~G~~v~~~~-~~~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~~~~~~~~~~~  340 (660)
T PLN02861        263 ATEEDSYFSYLPLAHVYDQVI-ETYCISKGASIGFWQ-GDIRYLMEDVQALKPTIFCGVPRVYDRIYTGIMQKISSGGML  340 (660)
T ss_pred             CCCCCEEEEECcHHHHHHHHH-HHHHHHhCCEEEEeC-CCHHHHHHHHHHhCCcEEeechHHHHHHHHHHHHHHhccCHH
Confidence            467899999999999999854 556899999998874 68999999999999999999999999886410          


Q ss_pred             ---------------------------CcCCC-------CC-CCceEEeecCCCCCHHHHHHHHHhCCCCceeecccccc
Q 026609           80 ---------------------------LVKKF-------DL-SSLKLVGSGAAPLGKELMEECAKNVPSATVIQVGYGLT  124 (236)
Q Consensus        80 ---------------------------~~~~~-------~l-~~lr~i~~~G~~~~~~~~~~~~~~~~~~~v~~~~YG~t  124 (236)
                                                 .....       .+ .++|.+++||+++++++. .|.+.++...+++ .||+|
T Consensus       341 ~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~lg~~lr~~~~Ggapl~~~~~-~~~~~~~~~~l~~-~YG~T  418 (660)
T PLN02861        341 RKKLFDFAYNYKLGNLRKGLKQEEASPRLDRLVFDKIKEGLGGRVRLLLSGAAPLPRHVE-EFLRVTSCSVLSQ-GYGLT  418 (660)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCcCccHhHHHHHHHHHHHHhCCcEEEEEECCCCCCHHHH-HHHHHHcCCCeeE-ecchh
Confidence                                       00000       11 478999999999999975 4666666446788 99999


Q ss_pred             ccccccccccCCCCCCCCCCccccCCCcEEEEEeC-CCC-CCCCCCCceEEEEecCccchhhcCCcccccccccCCCeEe
Q 026609          125 ETSGIATMENSFAGSRNIGSAGALAPGVEALIVSV-DTQ-KPLPPNQLGEIWLRGPNMMRGYYNNEQATKLTIDKKGWVH  202 (236)
Q Consensus       125 E~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~-~~~-~~~~~g~~Gel~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (236)
                      |+++.++..... .....+++|+|+++++++++|. +.| ..++++..|||+++|+.++.|||++++.+...| .+|||+
T Consensus       419 E~~~~~~~~~~~-~~~~~gsvG~p~p~~ev~i~d~~~~g~~~~~~~~~GEi~vrGp~v~~GY~~~pe~T~~~f-~dGw~~  496 (660)
T PLN02861        419 ESCGGCFTSIAN-VFSMVGTVGVPMTTIEARLESVPEMGYDALSDVPRGEICLRGNTLFSGYHKRQDLTEEVL-IDGWFH  496 (660)
T ss_pred             hhhhceeecccc-cCCCCCCccCccCceEEEEEEccccCcccCCCCCceeEEEcCCcccccccCCHHHHHhhh-hccCcc
Confidence            997655433222 1234678999999999999983 334 445567789999999999999999999999888 689999


Q ss_pred             cCceEEEcCCCcEEEEcccCCceee-ccEEeecCC
Q 026609          203 TGDLGYFDGDGQLYVVDRIKELIKY-KGFQVTSNW  236 (236)
Q Consensus       203 TgD~~~~~~~g~~~~~GR~~d~i~~-~G~~i~p~~  236 (236)
                      |||+|++|+||+++|.||+||+||+ +|++|+|+|
T Consensus       497 TGDlg~~d~dG~l~i~GR~kd~Ik~~~G~~I~p~e  531 (660)
T PLN02861        497 TGDIGEWQPNGAMKIIDRKKNIFKLSQGEYVAVEN  531 (660)
T ss_pred             cCceEEECCCCcEEEEeccccceEcCCCeEEcHHH
Confidence            9999999999999999999999997 799999975

>PLN02330 4-coumarate--CoA ligase-like 1

Probab=100.00  E-value=5.2e-36  Score=258.81  Aligned_cols=224  Identities=42%  Similarity=0.753  Sum_probs=196.4

Q ss_pred             CCcEEEEecChhhHHhHHHHHHHHhhcCcEEEEcCCCCHHHHHHHHHhcCceEEEeChHHHHHHHhcCCcCCCCCC--Cc
Q 026609           12 LDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLS--SL   89 (236)
Q Consensus        12 ~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~--~l   89 (236)
                      ..++.+.++|++|.+|+...++.++..|+++++.+.+++..+++.++++++|.+.++|+++..+++........++  .+
T Consensus       226 ~~~~~~~~~p~~h~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~l  305 (546)
T PLN02330        226 GQVVTLGLIPFFHIYGITGICCATLRNKGKVVVMSRFELRTFLNALITQEVSFAPIVPPIILNLVKNPIVEEFDLSKLKL  305 (546)
T ss_pred             CceEEEEecChHHHHHHHHHHHHHhhcCCEEEEecccCHHHHHHHHHHcCCeeeecCCHHHHHHHhCccccccccchhee
Confidence            3468999999999999977788999999999999999999999999999999999999999999887654444444  47


Q ss_pred             eEEeecCCCCCHHHHHHHHHhCCCCceeeccccccccccccccccCCC---CCCCCCCccccCCCcEEEEEeCCCCCCCC
Q 026609           90 KLVGSGAAPLGKELMEECAKNVPSATVIQVGYGLTETSGIATMENSFA---GSRNIGSAGALAPGVEALIVSVDTQKPLP  166 (236)
Q Consensus        90 r~i~~~G~~~~~~~~~~~~~~~~~~~v~~~~YG~tE~g~~~~~~~~~~---~~~~~~~~g~p~~~~~~~~~~~~~~~~~~  166 (236)
                      |.++++|++++++++++|.+.|++..+++ .||+||++.+........   .......+|+|+++++++++|++++++++
T Consensus       306 ~~i~~~g~~l~~~~~~~~~~~~~~~~~~~-~YG~tE~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~v~i~d~~~~~~~p  384 (546)
T PLN02330        306 QAIMTAAAPLAPELLTAFEAKFPGVQVQE-AYGLTEHSCITLTHGDPEKGHGIAKKNSVGFILPNLEVKFIDPDTGRSLP  384 (546)
T ss_pred             eeEEEcCCcCCHHHHHHHHHHcCCCeEEe-cccccccccceecCCCccccccccccCccccccCCcEEEEEeCCCCccCC
Confidence            89999999999999999999997688999 999999986654322111   12334578999999999999988899999


Q ss_pred             CCCceEEEEecCccchhhcCCcccccccccCCCeEecCceEEEcCCCcEEEEcccCCceeeccEEeecCC
Q 026609          167 PNQLGEIWLRGPNMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSNW  236 (236)
Q Consensus       167 ~g~~Gel~v~~~~~~~~~~~~~~~~~~~~~~~~~~~TgD~~~~~~~g~~~~~GR~~d~i~~~G~~i~p~~  236 (236)
                      .|+.|||+++++.++.+|+++++.+...++.+|||+|||++++++||.+++.||.+|+|+++|++|+|.|
T Consensus       385 ~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~g~~~TGD~~~~~~dG~l~~~GR~~d~i~~~G~~v~~~~  454 (546)
T PLN02330        385 KNTPGELCVRSQCVMQGYYNNKEETDRTIDEDGWLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAE  454 (546)
T ss_pred             CCCceEEEEecchhhhhhccCccchhhhccCCCceecccEEEEeCCCcEEEEechHHhhhcCCEEECHHH
Confidence            9999999999999999999999988888878899999999999999999999999999999999999864

>PRK07514 malonyl-CoA synthase; Validated

Probab=100.00  E-value=4e-36  Score=257.05  Aligned_cols=225  Identities=31%  Similarity=0.472  Sum_probs=200.8

Q ss_pred             eeccCCCCcEEEEecChhhHHhHHHHHHHHhhcCcEEEEcCCCCHHHHHHHHHhcCceEEEeChHHHHHHHhcCCcCCCC
Q 026609            6 QETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFD   85 (236)
Q Consensus         6 ~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~   85 (236)
                      ..++..++|++++.+|++|..|+...++.++..|+++++.+..++..+++.++  ++|.+.++|+++..+++........
T Consensus       190 ~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~--~~t~~~~~P~~~~~l~~~~~~~~~~  267 (504)
T PRK07514        190 DYWRFTPDDVLIHALPIFHTHGLFVATNVALLAGASMIFLPKFDPDAVLALMP--RATVMMGVPTFYTRLLQEPRLTREA  267 (504)
T ss_pred             HHhCCCCccEEEEecchHHHHHHHHHHHHHHhcCcEEEECCCCCHHHHHHHHH--hheeeecHHHHHHHHHcCCCCCccc
Confidence            34567889999999999999999778889999999999999899999999994  6999999999999998876666667


Q ss_pred             CCCceEEeecCCCCCHHHHHHHHHhCCCCceeeccccccccccccccccCCCCCCCCCCccccCCCcEEEEEeCCCCCCC
Q 026609           86 LSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPL  165 (236)
Q Consensus        86 l~~lr~i~~~G~~~~~~~~~~~~~~~~~~~v~~~~YG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~  165 (236)
                      ++++|.++.+|+++++++.+.|.+.++ ..+++ .||+||++.......  ........+|.|+++++++++|+++++++
T Consensus       268 ~~~lr~~~~gg~~~~~~~~~~~~~~~~-~~~~~-~YG~tE~~~~~~~~~--~~~~~~~~~G~~~~~~~v~i~d~~~~~~~  343 (504)
T PRK07514        268 AAHMRLFISGSAPLLAETHREFQERTG-HAILE-RYGMTETNMNTSNPY--DGERRAGTVGFPLPGVSLRVTDPETGAEL  343 (504)
T ss_pred             ccceeeEEecCCCCCHHHHHHHHHHhC-Cccee-ecccccccccccCCc--cccccCcccccCCCCcEEEEEECCCCCCC
Confidence            889999999999999999999999986 78888 999999986654322  11334567899999999999998889999


Q ss_pred             CCCCceEEEEecCccchhhcCCcccccccccCCCeEecCceEEEcCCCcEEEEcccCCceeeccEEeecCC
Q 026609          166 PPNQLGEIWLRGPNMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSNW  236 (236)
Q Consensus       166 ~~g~~Gel~v~~~~~~~~~~~~~~~~~~~~~~~~~~~TgD~~~~~~~g~~~~~GR~~d~i~~~G~~i~p~~  236 (236)
                      +.|+.|||+++++.++.+|+++++.+...+..++||+|||+++++++|.+++.||+||+||++|++|+|.|
T Consensus       344 ~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~~~~~~~~TGDl~~~~~~g~~~~~GR~~~~i~~~G~~i~~~~  414 (504)
T PRK07514        344 PPGEIGMIEVKGPNVFKGYWRMPEKTAEEFRADGFFITGDLGKIDERGYVHIVGRGKDLIISGGYNVYPKE  414 (504)
T ss_pred             CCCCceEEEEecCCccccccCCchhhhhhcccCCCeeecceEEEcCCccEEEeccccceEEeCCeEECHHH
Confidence            99999999999999999999999999888877899999999999999999999999999999999999864

>PRK05677 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=7.1e-36  Score=258.78  Aligned_cols=219  Identities=28%  Similarity=0.529  Sum_probs=194.3

Q ss_pred             CcEEEEecChhhHHhHHHHHHHHhhcCcEEEEcC-CCCHHHHHHHHHhcCceEEEeChHHHHHHHhcCCcCCCCCCCceE
Q 026609           13 DYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSSLKL   91 (236)
Q Consensus        13 ~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~   91 (236)
                      .+++++.+|++|.+++...++.++..|++.++.+ +.++..+++.++++++|.++++|+++..+++........++++|.
T Consensus       251 ~~~~~~~~pl~h~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~lr~  330 (562)
T PRK05677        251 CEILIAPLPLYHIYAFTFHCMAMMLIGNHNILISNPRDLPAMVKELGKWKFSGFVGLNTLFVALCNNEAFRKLDFSALKL  330 (562)
T ss_pred             ccEEEEcCcHHHHHHHHHHHHHHHHcCCeEEEecCcccHHHHHHHHHHcCceEEecHHHHHHHHHhCcccccCChhhceE
Confidence            4789999999999999777888888888877765 578999999999999999999999999998765444556789999


Q ss_pred             EeecCCCCCHHHHHHHHHhCCCCceeeccccccccccccccccCCCCCCCCCCccccCCCcEEEEEeCCCCCCCCCCCce
Q 026609           92 VGSGAAPLGKELMEECAKNVPSATVIQVGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLG  171 (236)
Q Consensus        92 i~~~G~~~~~~~~~~~~~~~~~~~v~~~~YG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~g~~G  171 (236)
                      ++++|+++++++.+.|.+.++ ..+++ .||+||++.+.......  ...++.+|+|++++.++++|+ ++++++.|+.|
T Consensus       331 v~~gG~~~~~~~~~~~~~~~~-~~v~~-~YG~tE~~~~~~~~~~~--~~~~~~vG~~~~~~~v~i~d~-~~~~~~~g~~G  405 (562)
T PRK05677        331 TLSGGMALQLATAERWKEVTG-CAICE-GYGMTETSPVVSVNPSQ--AIQVGTIGIPVPSTLCKVIDD-DGNELPLGEVG  405 (562)
T ss_pred             EEEcCccCCHHHHHHHHHHcC-CCeec-cCCccccCcceeecCcc--CCCCCccCccCCCCEEEEECC-CCCCCCCCCCe
Confidence            999999999999999999886 88998 99999998766543322  334567999999999999994 68899999999


Q ss_pred             EEEEecCccchhhcCCcccccccccCCCeEecCceEEEcCCCcEEEEcccCCceeeccEEeecCC
Q 026609          172 EIWLRGPNMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSNW  236 (236)
Q Consensus       172 el~v~~~~~~~~~~~~~~~~~~~~~~~~~~~TgD~~~~~~~g~~~~~GR~~d~i~~~G~~i~p~~  236 (236)
                      ||+++++.++.+|+++++.+...|..++||+|||+++++++|.+++.||.+|+|+++|++|+|.|
T Consensus       406 el~v~g~~~~~gY~~~~~~t~~~~~~~g~~~TGDlg~~~~~G~l~i~GR~~d~i~~~G~~i~p~e  470 (562)
T PRK05677        406 ELCVKGPQVMKGYWQRPEATDEILDSDGWLKTGDIALIQEDGYMRIVDRKKDMILVSGFNVYPNE  470 (562)
T ss_pred             EEEEecCccchhhcCCchhhhhccCCCCcccccceEEECCCCcEEEEecCcCeEEeCCEEECHHH
Confidence            99999999999999999999888877899999999999999999999999999999999999975

>PRK10524 prpE propionyl-CoA synthetase; Provisional

Probab=100.00  E-value=3.8e-36  Score=263.59  Aligned_cols=229  Identities=24%  Similarity=0.323  Sum_probs=194.1

Q ss_pred             eeccCCCCcEEEEecChhhHHhHHHHHHHHhhcCcEEEEcC----CCCHHHHHHHHHhcCceEEEeChHHHHHHHhcCCc
Q 026609            6 QETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA----KFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLV   81 (236)
Q Consensus         6 ~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~----~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~   81 (236)
                      ..+++.++|++++.+|++|..++...++.++..|+++++.+    .+++..+++.++++++|+++++|++++.|.+....
T Consensus       268 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~v~~~g~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~  347 (629)
T PRK10524        268 TIFGGKAGETFFCASDIGWVVGHSYIVYAPLLAGMATIMYEGLPTRPDAGIWWRIVEKYKVNRMFSAPTAIRVLKKQDPA  347 (629)
T ss_pred             HhcCCCCCCEEEEcCCCCeeccchHHHHHHHhCCCEEEEECCCCCCCChHHHHHHHHHcCceEEEeCHHHHHHHHhcCcc
Confidence            34677889999999999999998778899999999999976    35789999999999999999999999998876432


Q ss_pred             --CCCCCCCceEEeecCCCCCHHHHHHHHHhCCCCceeeccccccccccccccccC--CCCCCCCCCccccCCCcEEEEE
Q 026609           82 --KKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVGYGLTETSGIATMENS--FAGSRNIGSAGALAPGVEALIV  157 (236)
Q Consensus        82 --~~~~l~~lr~i~~~G~~~~~~~~~~~~~~~~~~~v~~~~YG~tE~g~~~~~~~~--~~~~~~~~~~g~p~~~~~~~~~  157 (236)
                        ...+++++|.++++|+++++++.+++.+.++ ..+++ .||+||++........  .......+.+|+|+++++++++
T Consensus       348 ~~~~~~l~~lr~i~~~Ge~l~~~~~~~~~~~~~-~~v~~-~YG~TE~~~~~~~~~~~~~~~~~~~~~~G~p~~g~~~~i~  425 (629)
T PRK10524        348 LLRKHDLSSLRALFLAGEPLDEPTASWISEALG-VPVID-NYWQTETGWPILAIARGVEDRPTRLGSPGVPMYGYNVKLL  425 (629)
T ss_pred             cccccChhheeEEEEeCCCCCHHHHHHHHHhcC-CCeEe-ccccccccchhhcCCCCcccCcCCCCCcccCcCCceEEEE
Confidence              3446789999999999999999999999987 78888 9999999843322221  1113345788999999999999


Q ss_pred             eCCCCCCCCCCCceEEEEecC---ccchhhcCCccccccccc---CCCeEecCceEEEcCCCcEEEEcccCCceeeccEE
Q 026609          158 SVDTQKPLPPNQLGEIWLRGP---NMMRGYYNNEQATKLTID---KKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQ  231 (236)
Q Consensus       158 ~~~~~~~~~~g~~Gel~v~~~---~~~~~~~~~~~~~~~~~~---~~~~~~TgD~~~~~~~g~~~~~GR~~d~i~~~G~~  231 (236)
                      |++++++++.|+.|||+++++   +.+.+|+++++.+...+.   .++||+|||+++++++|.+++.||.||+||++|++
T Consensus       426 d~~~g~~~~~g~~Gel~i~gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGDl~~~d~dG~l~i~GR~dd~i~~~G~r  505 (629)
T PRK10524        426 NEVTGEPCGPNEKGVLVIEGPLPPGCMQTVWGDDDRFVKTYWSLFGRQVYSTFDWGIRDADGYYFILGRTDDVINVAGHR  505 (629)
T ss_pred             eCCCCCCCCCCCcEEEEEcCCCChhhcCCccCChHHHHHhhhccCCCcEEEcCCcEEEcCCCcEEEEEEecCeEEeCCEE
Confidence            965899999999999999997   567899998877655432   46899999999999999999999999999999999


Q ss_pred             eecCC
Q 026609          232 VTSNW  236 (236)
Q Consensus       232 i~p~~  236 (236)
                      |+|.|
T Consensus       506 i~p~e  510 (629)
T PRK10524        506 LGTRE  510 (629)
T ss_pred             eCHHH
Confidence            99965

>PRK07638 acyl-CoA synthetase; Validated

Probab=100.00  E-value=7.2e-36  Score=254.59  Aligned_cols=222  Identities=22%  Similarity=0.334  Sum_probs=194.6

Q ss_pred             eeccCCCCcEEEEecChhhHHhHHHHHHHHhhcCcEEEEcCCCCHHHHHHHHHhcCceEEEeChHHHHHHHhcCCcCCCC
Q 026609            6 QETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFD   85 (236)
Q Consensus         6 ~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~   85 (236)
                      ..++..++|+++...|++|..++ ..++.+++.|+++++.+.+++..+++.++++++|.+.++|+++..|.+...    .
T Consensus       177 ~~~~~~~~d~~~~~~~l~~~~~l-~~~~~~l~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~----~  251 (487)
T PRK07638        177 HDFHMKREDSVLIAGTLVHSLFL-YGAISTLYVGQTVHLMRKFIPNQVLDKLETENISVMYTVPTMLESLYKENR----V  251 (487)
T ss_pred             HhcCcCCCCEEEEeecchHHHHH-HHHHHHHccCcEEEEcCCCCHHHHHHHHHHcCCeEEEeCcHHHHHHHhCcC----c
Confidence            44667889999999999999887 678889999999999999999999999999999999999999999987632    2


Q ss_pred             CCCceEEeecCCCCCHHHHHHHHHhCCCCceeeccccccccccccccccCCCCCCCCCCccccCCCcEEEEEeCCCCCCC
Q 026609           86 LSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPL  165 (236)
Q Consensus        86 l~~lr~i~~~G~~~~~~~~~~~~~~~~~~~v~~~~YG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~  165 (236)
                      ..+.+.++++|+.+++++.+++.+.+++..+++ .||+||++.++.... .........+|+|++++.++++| ++++++
T Consensus       252 ~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~~-~YG~tE~~~~~~~~~-~~~~~~~~~~G~~~~~~~~~i~d-~~g~~~  328 (487)
T PRK07638        252 IENKMKIISSGAKWEAEAKEKIKNIFPYAKLYE-FYGASELSFVTALVD-EESERRPNSVGRPFHNVQVRICN-EAGEEV  328 (487)
T ss_pred             CCceeEEEEcCCCCCHHHHHHHHHHcCCCeEEE-EecCCccCceEEecc-cccCCCCCCCCcccCCcEEEEEC-CCCCCC
Confidence            345666788999999999999999998788988 999999997766543 22244567899999999999999 578999


Q ss_pred             CCCCceEEEEecCccchhhcCCcccccccccCCCeEecCceEEEcCCCcEEEEcccCCceeeccEEeecCC
Q 026609          166 PPNQLGEIWLRGPNMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSNW  236 (236)
Q Consensus       166 ~~g~~Gel~v~~~~~~~~~~~~~~~~~~~~~~~~~~~TgD~~~~~~~g~~~~~GR~~d~i~~~G~~i~p~~  236 (236)
                      ++|+.|||+++++.++.+|+++++.+...+ .+|||+|||+++++++|++++.||++|+||++|++|+|.|
T Consensus       329 ~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~-~~g~~~TGDl~~~d~~g~l~i~GR~~d~i~~~G~~v~~~e  398 (487)
T PRK07638        329 QKGEIGTVYVKSPQFFMGYIIGGVLARELN-ADGWMTVRDVGYEDEEGFIYIVGREKNMILFGGINIFPEE  398 (487)
T ss_pred             CCCCCeEEEEecccceeeecCCHHHHhhhc-cCCcEecCccEeEcCCCeEEEEecCCCeEEeCCEEECHHH
Confidence            999999999999999999999987766544 6899999999999999999999999999999999999864

>PRK05605 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=7.1e-36  Score=259.37  Aligned_cols=221  Identities=33%  Similarity=0.511  Sum_probs=198.9

Q ss_pred             CCcEEEEecChhhHHhHHHHHHHHhhcCcEEEEcCCCCHHHHHHHHHhcCceEEEeChHHHHHHHhcCCcCCCCCCCceE
Q 026609           12 LDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSSLKL   91 (236)
Q Consensus        12 ~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~   91 (236)
                      .+|++++.+|++|.+|+...++.+++.|+++++.+.+++..+++.++++++|.+.++|++++.|++........++++|.
T Consensus       261 ~~~~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~  340 (573)
T PRK05605        261 GPERVLAALPMFHAYGLTLCLTLAVSIGGELVLLPAPDIDLILDAMKKHPPTWLPGVPPLYEKIAEAAEERGVDLSGVRN  340 (573)
T ss_pred             CCcEEEEecChHHHHHHHHHHHHHHHcCCEEEEeCCCCHHHHHHHHHHhCCEEEEchHHHHHHHHhCccccCCCchhccE
Confidence            46899999999999999777888899999999998889999999999999999999999999999887767778899999


Q ss_pred             EeecCCCCCHHHHHHHHHhCCCCceeeccccccccccccccccCCCCCCCCCCccccCCCcEEEEEeCCC-CCCCCCCCc
Q 026609           92 VGSGAAPLGKELMEECAKNVPSATVIQVGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDT-QKPLPPNQL  170 (236)
Q Consensus        92 i~~~G~~~~~~~~~~~~~~~~~~~v~~~~YG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~-~~~~~~g~~  170 (236)
                      ++.+|+++++++.+.|.+.++ ..+++ .||+||++.++...... .....+.+|.|.+++.++++|+++ +++++.|+.
T Consensus       341 i~~gg~~l~~~~~~~~~~~~~-~~i~~-~YG~TE~~~~~~~~~~~-~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~g~~  417 (573)
T PRK05605        341 AFSGAMALPVSTVELWEKLTG-GLLVE-GYGLTETSPIIVGNPMS-DDRRPGYVGVPFPDTEVRIVDPEDPDETMPDGEE  417 (573)
T ss_pred             EEECCCcCCHHHHHHHHHHhC-CCeec-ccccchhchhhhcCCcc-cCCcCCccccCCCCCEEEEEcCCCCCccCCCCCe
Confidence            999999999999999999886 78888 99999998876654322 234457899999999999999766 689999999


Q ss_pred             eEEEEecCccchhhcCCcccccccccCCCeEecCceEEEcCCCcEEEEcccCCceeeccEEeecCC
Q 026609          171 GEIWLRGPNMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSNW  236 (236)
Q Consensus       171 Gel~v~~~~~~~~~~~~~~~~~~~~~~~~~~~TgD~~~~~~~g~~~~~GR~~d~i~~~G~~i~p~~  236 (236)
                      |||+++++.++.+|+++++.+...| .+|||+|||+++++++|++++.||.||+++++|++|+|.|
T Consensus       418 Gel~v~~~~~~~gy~~~~~~~~~~~-~~g~~~TGD~~~~~~~g~l~i~gR~dd~i~~~G~~v~p~e  482 (573)
T PRK05605        418 GELLVRGPQVFKGYWNRPEETAKSF-LDGWFRTGDVVVMEEDGFIRIVDRIKELIITGGFNVYPAE  482 (573)
T ss_pred             eEEEEecCchhhhhcCChhHhhhcc-cCCCcccCCEEEEcCCCcEEEEeccccceeeCCEEECHHH
Confidence            9999999999999999999888877 5679999999999999999999999999999999999865

>PRK06060 acyl-CoA synthetase; Validated

Probab=100.00  E-value=6.3e-36  Score=265.20  Aligned_cols=221  Identities=20%  Similarity=0.296  Sum_probs=193.2

Q ss_pred             eccCCCCcEEEEecChhhHHhHHHHHHHHhhcCcEEEEcC-CCCHHHHHHHHHhcCceEEEeChHHHHHHHhcCCcCCCC
Q 026609            7 ETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFD   85 (236)
Q Consensus         7 ~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~   85 (236)
                      .++..++|++++.+|++|..++...++.++..|+++++.+ .+++..+++.++++++|.++++|+++..+++...  ...
T Consensus       181 ~~~~~~~d~~l~~~~~~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~--~~~  258 (705)
T PRK06060        181 ALRLTPEDTGLCSARMYFAYGLGNSVWFPLATGGSAVINSAPVTPEAAAILSARFGPSVLYGVPNFFARVIDSCS--PDS  258 (705)
T ss_pred             hhCCCCcceeEEeccchhhcchhHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHhcCCeEEeeHHHHHHHHHHhcc--ccc
Confidence            4567888999999999999998777889999999999987 5788889999999999999999999999987543  335


Q ss_pred             CCCceEEeecCCCCCHHHHHHHHHhCCCCceeeccccccccccccccccCCCCCCCCCCccccCCCcEEEEEeCCCCCCC
Q 026609           86 LSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPL  165 (236)
Q Consensus        86 l~~lr~i~~~G~~~~~~~~~~~~~~~~~~~v~~~~YG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~  165 (236)
                      ++++|.++++|+++++++.+.|.+.+++..+++ .||+||++..+......  ......+|+|+++++++++| ++++++
T Consensus       259 ~~slr~i~~gGe~l~~~~~~~~~~~~~~~~~~~-~YG~tE~~~~~~~~~~~--~~~~~~iG~p~~~~~v~i~d-~~g~~~  334 (705)
T PRK06060        259 FRSLRCVVSAGEALELGLAERLMEFFGGIPILD-GIGSTEVGQTFVSNRVD--EWRLGTLGRVLPPYEIRVVA-PDGTTA  334 (705)
T ss_pred             ccceeEEEEecCcCCHHHHHHHHHHcCCCceEe-eeeccccCceEEeccCC--CCCcCcccccCCCcEEEEEC-CCCCCC
Confidence            789999999999999999999999997788888 99999998665433221  23456789999999999999 478999


Q ss_pred             CCCCceEEEEecCccchhhcCCcccccccccCCCeEecCceEEEcCCCcEEEEcccCCceeeccEEeecCC
Q 026609          166 PPNQLGEIWLRGPNMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSNW  236 (236)
Q Consensus       166 ~~g~~Gel~v~~~~~~~~~~~~~~~~~~~~~~~~~~~TgD~~~~~~~g~~~~~GR~~d~i~~~G~~i~p~~  236 (236)
                      +.|+.|||+|+|+.++.||+++++.+.   ..++||+|||+++++++|++++.||+||+||++|++|+|.|
T Consensus       335 ~~g~~GEl~i~g~~v~~GY~~~~~~~~---~~~~~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~~~e  402 (705)
T PRK06060        335 GPGVEGDLWVRGPAIAKGYWNRPDSPV---ANEGWLDTRDRVCIDSDGWVTYRCRADDTEVIGGVNVDPRE  402 (705)
T ss_pred             CCCCceEEEEccchhhhhhhCCCcccc---cCCCcEECCeeEEECCCceEEEecccCceEEECCEEECHHH
Confidence            999999999999999999999987653   25789999999999999999999999999999999999875

>PRK03640 O-succinylbenzoic acid--CoA ligase; Provisional

Probab=100.00  E-value=8.5e-36  Score=253.81  Aligned_cols=222  Identities=33%  Similarity=0.483  Sum_probs=194.6

Q ss_pred             eccCCCCcEEEEecChhhHHhHHHHHHHHhhcCcEEEEcCCCCHHHHHHHHHhcCceEEEeChHHHHHHHhcCCcCCCCC
Q 026609            7 ETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDL   86 (236)
Q Consensus         7 ~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l   86 (236)
                      .++..++|++++.+|++|.+++ ..++.++..|+++++.+.+++..+++.++++++|++.++|+++..|.+..... ...
T Consensus       176 ~~~~~~~d~~l~~~p~~~~~g~-~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~-~~~  253 (483)
T PRK03640        176 NLGLTEDDCWLAAVPIFHISGL-SILMRSVIYGMRVVLVEKFDAEKINKLLQTGGVTIISVVSTMLQRLLERLGEG-TYP  253 (483)
T ss_pred             hcCCCcCcEEEEecCHHHHHHH-HHHHHHHhcCCEEEecCCCCHHHHHHHHHHhCCcEEEeHHHHHHHHHhCcCcc-ccC
Confidence            3577889999999999999998 56788999999999999999999999999999999999999999998764433 334


Q ss_pred             CCceEEeecCCCCCHHHHHHHHHhCCCCceeeccccccccccccccccCCCCCCCCCCccccCCCcEEEEEeCCCCCCCC
Q 026609           87 SSLKLVGSGAAPLGKELMEECAKNVPSATVIQVGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLP  166 (236)
Q Consensus        87 ~~lr~i~~~G~~~~~~~~~~~~~~~~~~~v~~~~YG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~  166 (236)
                      .++|.++++|+++++++.+.+++.  +..+++ .||+||++..+............+.+|+|++++++++.++  +++++
T Consensus       254 ~~lr~~~~~g~~~~~~~~~~~~~~--~~~~~~-~YG~tE~~~~~~~~~~~~~~~~~~~vG~p~~~~~~~i~~~--~~~~~  328 (483)
T PRK03640        254 SSFRCMLLGGGPAPKPLLEQCKEK--GIPVYQ-SYGMTETASQIVTLSPEDALTKLGSAGKPLFPCELKIEKD--GVVVP  328 (483)
T ss_pred             CcceEEEEcCCCCCHHHHHHHHHh--CCCeee-eeccCcccccccccCcccccccCCCcccccCCcEEEEecC--CCcCC
Confidence            689999999999999999988875  488998 9999999865544333333455678999999999999883  48899


Q ss_pred             CCCceEEEEecCccchhhcCCcccccccccCCCeEecCceEEEcCCCcEEEEcccCCceeeccEEeecCC
Q 026609          167 PNQLGEIWLRGPNMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSNW  236 (236)
Q Consensus       167 ~g~~Gel~v~~~~~~~~~~~~~~~~~~~~~~~~~~~TgD~~~~~~~g~~~~~GR~~d~i~~~G~~i~p~~  236 (236)
                      .|+.|||+++++.++.+|+++++.+...+ .++||+|||+++++++|.+++.||+||++|.+|++|+|.|
T Consensus       329 ~g~~Gel~v~g~~~~~gy~~~~~~~~~~~-~~~~~~tGDl~~~~~~g~l~~~GR~~~~i~~~G~~v~~~~  397 (483)
T PRK03640        329 PFEEGEIVVKGPNVTKGYLNREDATRETF-QDGWFKTGDIGYLDEEGFLYVLDRRSDLIISGGENIYPAE  397 (483)
T ss_pred             CCCceEEEEECcchhhhhcCCHHHHHHHH-hcCCeeccceEEEcCCCCEEEeecccCeEEeCCEEECHHH
Confidence            99999999999999999999998888777 6889999999999999999999999999999999999864

>PRK07787 acyl-CoA synthetase; Validated

Probab=100.00  E-value=9.4e-36  Score=252.95  Aligned_cols=225  Identities=29%  Similarity=0.438  Sum_probs=196.9

Q ss_pred             eeeccCCCCcEEEEecChhhHHhHHHHHHHHhhcCcEEEEcCCCCHHHHHHHHHhcCceEEEeChHHHHHHHhcCCcCCC
Q 026609            5 DQETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKF   84 (236)
Q Consensus         5 ~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~   84 (236)
                      .+.++..++|++++.+|++|..|+...++.++..|+++++.+.+++..+++.++ ++++.+.++|+++..|.+... ...
T Consensus       161 ~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~-~~~t~~~~~P~~~~~l~~~~~-~~~  238 (471)
T PRK07787        161 AEAWQWTADDVLVHGLPLFHVHGLVLGVLGPLRIGNRFVHTGRPTPEAYAQALS-EGGTLYFGVPTVWSRIAADPE-AAR  238 (471)
T ss_pred             HHhcCCCccceeEeccCCeeechhHHHHHHHHhcCCEEEecCCCCHHHHHHHHh-hCceEEEcchHHHHHHHhCcc-ccc
Confidence            345667888999999999999999888999999999999998899999999999 999999999999999987543 234


Q ss_pred             CCCCceEEeecCCCCCHHHHHHHHHhCCCCceeeccccccccccccccccCCCCCCCCCCccccCCCcEEEEEeCCCCCC
Q 026609           85 DLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKP  164 (236)
Q Consensus        85 ~l~~lr~i~~~G~~~~~~~~~~~~~~~~~~~v~~~~YG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~  164 (236)
                      .++++|.++.||++++++++++|.+.++ ..+++ .||+||++........  ....++.+|+|.+++.++++|+ ++++
T Consensus       239 ~l~~l~~~~~gg~~~~~~~~~~~~~~~~-~~~~~-~YG~tE~~~~~~~~~~--~~~~~~~vG~~~~g~~~~i~d~-~~~~  313 (471)
T PRK07787        239 ALRGARLLVSGSAALPVPVFDRLAALTG-HRPVE-RYGMTETLITLSTRAD--GERRPGWVGLPLAGVETRLVDE-DGGP  313 (471)
T ss_pred             cccceeEEEECCCCCCHHHHHHHHHHcC-CCeec-ccCccccCcceecCCC--CcccCCcccccCCCcEEEEECC-CCCC
Confidence            6789999999999999999999999886 78888 9999999865443322  2344678999999999999995 5778


Q ss_pred             CC-CCC-ceEEEEecCccchhhcCCcccccccccCCCeEecCceEEEcCCCcEEEEccc-CCceeeccEEeecCC
Q 026609          165 LP-PNQ-LGEIWLRGPNMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRI-KELIKYKGFQVTSNW  236 (236)
Q Consensus       165 ~~-~g~-~Gel~v~~~~~~~~~~~~~~~~~~~~~~~~~~~TgD~~~~~~~g~~~~~GR~-~d~i~~~G~~i~p~~  236 (236)
                      ++ +|+ .|||+++|+.++.+|+++++.+...+..++||+|||++++++||.+++.||+ ||+++.+|++|+|.|
T Consensus       314 ~~~~~~~~Gei~v~g~~~~~gy~~~~~~t~~~~~~~~~~~TGDlg~~~~dg~l~~~GR~~d~~i~~~G~~v~~~e  388 (471)
T PRK07787        314 VPHDGETVGELQVRGPTLFDGYLNRPDATAAAFTADGWFRTGDVAVVDPDGMHRIVGRESTDLIKSGGYRIGAGE  388 (471)
T ss_pred             CCCCCCCceEEEEECcccchhhcCChhhchhcccCCCceecCceEEEcCCCCEEEeCCCCceeEeeCCEEECHHH
Confidence            77 454 7999999999999999999999988877899999999999999999999996 899999999999865

>PRK13382 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=1.1e-35  Score=256.21  Aligned_cols=221  Identities=25%  Similarity=0.380  Sum_probs=190.6

Q ss_pred             eccCCCCcEEEEecChhhHHhHHHHHHHHhhcCcEEEEcCCCCHHHHHHHHHhcCceEEEeChHHHHHHHhcCCc--CCC
Q 026609            7 ETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLV--KKF   84 (236)
Q Consensus         7 ~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~--~~~   84 (236)
                      .+...++|+++..+|++|.+|+ ..++.++..|+++++.+.+++..+++.++++++|.+.++|+++..|++....  ...
T Consensus       231 ~~~~~~~~~~l~~~p~~~~~g~-~~~~~~l~~g~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~  309 (537)
T PRK13382        231 RTPWRAEEPTVIVAPMFHAWGF-SQLVLAASLACTIVTRRRFDPEATLDLIDRHRATGLAVVPVMFDRIMDLPAEVRNRY  309 (537)
T ss_pred             hhCCCCCCeEEEecChHhhhHH-HHHHHHHhcCcEEEECCCcCHHHHHHHHHHhCCEEEEehHHHHHHHHcCCchhcccC
Confidence            3456678999999999999999 6788899999999999899999999999999999999999999999876432  233


Q ss_pred             CCCCceEEeecCCCCCHHHHHHHHHhCCCCceeeccccccccccccccccCCCCCCCCCCccccCCCcEEEEEeCCCCCC
Q 026609           85 DLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKP  164 (236)
Q Consensus        85 ~l~~lr~i~~~G~~~~~~~~~~~~~~~~~~~v~~~~YG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~  164 (236)
                      +++++|.++++|+++++++++.|.+.++ ..+++ .||+||++.++...... ....++.+|+|.++++++++| +++++
T Consensus       310 ~~~~lr~i~~gG~~l~~~~~~~~~~~~~-~~i~~-~YG~TE~~~~~~~~~~~-~~~~~~~vG~p~~~~~~~i~d-~~~~~  385 (537)
T PRK13382        310 SGRSLRFAAASGSRMRPDVVIAFMDQFG-DVIYN-NYNATEAGMIATATPAD-LRAAPDTAGRPAEGTEIRILD-QDFRE  385 (537)
T ss_pred             CccceeEEEEcCCCCCHHHHHHHHHHcC-CcEEe-cccccccCcceecChhH-hccCCCCccccCcCcEEEEEC-CCCCC
Confidence            5568999999999999999999999997 67888 99999998766543221 234567899999999999999 47899


Q ss_pred             CCCCCceEEEEecCccchhhcCCcccccccccCCCeEecCceEEEcCCCcEEEEcccCCceeeccEEeecCC
Q 026609          165 LPPNQLGEIWLRGPNMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSNW  236 (236)
Q Consensus       165 ~~~g~~Gel~v~~~~~~~~~~~~~~~~~~~~~~~~~~~TgD~~~~~~~g~~~~~GR~~d~i~~~G~~i~p~~  236 (236)
                      ++.|+.|||+++++.++.+|+  ++.+.. + .+|||+|||+++++++|++++.||+||+||++|++|+|.|
T Consensus       386 ~~~g~~GEl~v~g~~~~~gY~--~~~~~~-~-~~g~~~TGDl~~~~~~g~l~~~GR~dd~ik~~G~~v~~~e  453 (537)
T PRK13382        386 VPTGEVGTIFVRNDTQFDGYT--SGSTKD-F-HDGFMASGDVGYLDENGRLFVVGRDDEMIVSGGENVYPIE  453 (537)
T ss_pred             CCCCCeeEEEEEcCCcccCcc--ccchhh-c-cCCCEeeCceEEEeCCCcEEEeccccceeEECCEEECHHH
Confidence            999999999999999999997  333332 3 4789999999999999999999999999999999999864

>COG1022 FAA1 Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism]

Probab=100.00  E-value=3.6e-36  Score=255.66  Aligned_cols=211  Identities=33%  Similarity=0.482  Sum_probs=180.6

Q ss_pred             ecc-CCCCcEEEEecChhhHHhHHHHHHHHhhcCcEEEEcCCCCHHHHHHHHHhcCceEEEeChHHHHHHHhcC----Cc
Q 026609            7 ETA-GELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHG----LV   81 (236)
Q Consensus         7 ~~~-~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~----~~   81 (236)
                      ... ..++|+.++++|+.|++...+.....++.|+++...  .++..+++.+++.++|.++++|.+|+.+-+..    .+
T Consensus       226 ~~~~~~~~d~~LsfLPlaHi~Er~~~~~~~~~~g~~~~~~--~~~~~~~~dl~~~rPt~m~~VPRvwE~i~~~I~~kv~~  303 (613)
T COG1022         226 VLPPIGPGDRVLSFLPLAHIFERAFEGGLALYGGVTVLFK--EDPRTLLEDLKEVRPTVMIGVPRVWEKVYKGIMEKVAK  303 (613)
T ss_pred             hCCCCCCCcEEEEeCcHHHHHHHHHHHHHHhhcceEEEec--CCHHHHHHHHHHhCCeEEeechHHHHHHHHHHHHHHHh
Confidence            343 789999999999999999965555556666665554  48999999999999999999999888553310    00


Q ss_pred             CC-------------------------------------------CCC-CCceEEeecCCCCCHHHHHHHHHhCCCCcee
Q 026609           82 KK-------------------------------------------FDL-SSLKLVGSGAAPLGKELMEECAKNVPSATVI  117 (236)
Q Consensus        82 ~~-------------------------------------------~~l-~~lr~i~~~G~~~~~~~~~~~~~~~~~~~v~  117 (236)
                      ..                                           ..+ .++|.+++||+++++++.++++..  +.++.
T Consensus       304 ~~~~~~~if~~a~~~~~~~~~~~~~~~~~~~~~~~~d~LVf~Kir~~lGgri~~~~sGGa~l~~~~~~f~~~l--Gi~i~  381 (613)
T COG1022         304 APAVRRKLFRWALKVAYKKISRALLGGGPLSWLLVADRLVFRKIRDALGGRIRYALSGGAPLSPELLHFFRSL--GIPIL  381 (613)
T ss_pred             cchhHHHHHHHHHHHHHHHHHhhhcccCCcchhhhhhHHHHHHHHHHhCCcEEEEEecCCcCCHHHHHHHHHc--CCCeE
Confidence            00                                           001 389999999999999999888877  59999


Q ss_pred             eccccccccccccccccCCCCCCCCCCccccCCCcEEEEEeCCCCCCCCCCCceEEEEecCccchhhcCCcccccccccC
Q 026609          118 QVGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQATKLTIDK  197 (236)
Q Consensus       118 ~~~YG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~g~~Gel~v~~~~~~~~~~~~~~~~~~~~~~  197 (236)
                      . .||+||+.+..+..++.  ....+++|.|+|+++++++|+           |||+|+||.++.|||++|+.|.+.|+.
T Consensus       382 e-GYGlTEts~~~~v~~~~--~~~~gtvG~p~p~~evKI~d~-----------GEilVRG~~Vm~GYyk~pe~Taeaf~~  447 (613)
T COG1022         382 E-GYGLTETSAVVSVNPPD--RFVLGTVGKPLPGIEVKIADD-----------GEILVRGPNVMKGYYKNPEATAEAFTE  447 (613)
T ss_pred             E-EecccccccceEEcccc--CcccCCcCCcCCCceEEEccC-----------ceEEEecchhcchhcCChHHHhhhccc
Confidence            9 99999999988876655  567788999999999999983           999999999999999999999999999


Q ss_pred             CCeEecCceEEEcCCCcEEEEcccCCceee-ccEEeecC
Q 026609          198 KGWVHTGDLGYFDGDGQLYVVDRIKELIKY-KGFQVTSN  235 (236)
Q Consensus       198 ~~~~~TgD~~~~~~~g~~~~~GR~~d~i~~-~G~~i~p~  235 (236)
                      ||||+|||+|.++++|++.+.||++|+||+ +|++|.|+
T Consensus       448 DGWf~TGDlg~~d~~g~L~i~gRkK~~i~l~~GknIaP~  486 (613)
T COG1022         448 DGWFRTGDLGELDEDGYLVITGRKKELIKLSNGKNIAPE  486 (613)
T ss_pred             cCCcccCceeEEcCCCcEEEeecccceEECCCCcccChH
Confidence            999999999999999999999999999999 89999996

>PRK06087 short chain acyl-CoA synthetase; Reviewed

Probab=100.00  E-value=1.3e-35  Score=256.36  Aligned_cols=227  Identities=28%  Similarity=0.407  Sum_probs=199.3

Q ss_pred             eeccCCCCcEEEEecChhhHHhHHHHHHHHhhcCcEEEEcCCCCHHHHHHHHHhcCceEEEeChHHHHHHHhcCCcCCCC
Q 026609            6 QETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFD   85 (236)
Q Consensus         6 ~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~   85 (236)
                      ..++..++|++++.+|++|.+|+...++.+++.|+++++.+.+++..+++.+++++++.++++|+.+..+++........
T Consensus       221 ~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~~~~~~~~l~~~~~~~~~  300 (547)
T PRK06087        221 ARLNLTWQDVFMMPAPLGHATGFLHGVTAPFLIGARSVLLDIFTPDACLALLEQQRCTCMLGATPFIYDLLNLLEKQPAD  300 (547)
T ss_pred             HhcCCCCCCeEEEecchHHHHHHHHHHHHHHhcCCEEEecCCCCHHHHHHHHHHcCCCEEeccHHHHHHHHhccccCCCC
Confidence            34567889999999999999999788999999999999999999999999999999999999888888887776556667


Q ss_pred             CCCceEEeecCCCCCHHHHHHHHHhCCCCceeeccccccccccccccccCCCCCCCCCCccccCCCcEEEEEeCCCCCCC
Q 026609           86 LSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPL  165 (236)
Q Consensus        86 l~~lr~i~~~G~~~~~~~~~~~~~~~~~~~v~~~~YG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~  165 (236)
                      ++++|.++++|+++++++.+.+.+.  +..+++ .||+||++.+................|.|++++.++++| +.++++
T Consensus       301 ~~~lr~i~~gG~~~~~~~~~~~~~~--~~~l~~-~YG~TE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d-~~~~~~  376 (547)
T PRK06087        301 LSALRFFLCGGTTIPKKVARECQQR--GIKLLS-VYGSTESSPHAVVNLDDPLSRFMHTDGYAAAGVEIKVVD-EARKTL  376 (547)
T ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHc--CCcEEE-EecccccCCccccCCCcchhhcCCcCCccCCCceEEEEc-CCCCCC
Confidence            8899999999999999999888775  488998 999999987766433221122345679999999999999 678899


Q ss_pred             CCCCceEEEEecCccchhhcCCcccccccccCCCeEecCceEEEcCCCcEEEEcccCCceeeccEEeecCC
Q 026609          166 PPNQLGEIWLRGPNMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSNW  236 (236)
Q Consensus       166 ~~g~~Gel~v~~~~~~~~~~~~~~~~~~~~~~~~~~~TgD~~~~~~~g~~~~~GR~~d~i~~~G~~i~p~~  236 (236)
                      +.|+.|||+++|+.++.+|+++++.+...+..++||+|||+++++++|+++++||.+|+|+.+|++|+|.|
T Consensus       377 ~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~g~~~TGDl~~~~~~g~l~i~GR~~d~i~~~G~~v~p~~  447 (547)
T PRK06087        377 PPGCEGEEASRGPNVFMGYLDEPELTARALDEEGWYYSGDLCRMDEAGYIKITGRKKDIIVRGGENISSRE  447 (547)
T ss_pred             cCCCcceEEEecccccccccCCHHHHHHHhCCCCCcCcCceEEECCCCCEEEEecchhhhhcCCEEECHHH
Confidence            99999999999999999999999998888877899999999999999999999999999999999999864

>PRK09274 peptide synthase; Provisional

Probab=100.00  E-value=1.2e-35  Score=256.86  Aligned_cols=222  Identities=30%  Similarity=0.465  Sum_probs=186.1

Q ss_pred             eeccCCCCcEEEEecChhhHHhHHHHHHHHhhcCcEEEEcC-------CCCHHHHHHHHHhcCceEEEeChHHHHHHHhc
Q 026609            6 QETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-------KFDLEMFLRAIEKHRVTHIWVVPPLILALAKH   78 (236)
Q Consensus         6 ~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~-------~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~   78 (236)
                      ..++..++|+.++.+|++|..++        ..|+++++.+       .+++..+++.++++++|+++++|++++.|.+.
T Consensus       208 ~~~~~~~~~~~~~~~pl~~~~~~--------~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~  279 (552)
T PRK09274        208 EDYGIEPGEIDLPTFPLFALFGP--------ALGMTSVIPDMDPTRPATVDPAKLFAAIERYGVTNLFGSPALLERLGRY  279 (552)
T ss_pred             HHhCCCCCceeeeccCHHHhhhh--------hhCCeEEecCcccccccccCHHHHHHHHHHcCCeEEeccHHHHHHHHHH
Confidence            34577888999999999886554        3477777754       35789999999999999999999999999887


Q ss_pred             CCcCCCCCCCceEEeecCCCCCHHHHHHHHHhCCC-CceeeccccccccccccccccCC------C--CCCCCCCccccC
Q 026609           79 GLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPS-ATVIQVGYGLTETSGIATMENSF------A--GSRNIGSAGALA  149 (236)
Q Consensus        79 ~~~~~~~l~~lr~i~~~G~~~~~~~~~~~~~~~~~-~~v~~~~YG~tE~g~~~~~~~~~------~--~~~~~~~~g~p~  149 (236)
                      ......+++++|.++++|+++++++.+++.+.++. ..+++ .||+||++.++......      .  .......+|+|+
T Consensus       280 ~~~~~~~~~~lr~~~~gG~~~~~~~~~~~~~~~~~~~~~~~-~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~  358 (552)
T PRK09274        280 GEANGIKLPSLRRVISAGAPVPIAVIERFRAMLPPDAEILT-PYGATEALPISSIESREILFATRAATDNGAGICVGRPV  358 (552)
T ss_pred             hhhcCCCCchhhEEEecCCcCCHHHHHHHHHHcCCCceEEc-cccccccceeEeecchhhhccccccccCCCCcccCccC
Confidence            65556688999999999999999999999999963 68888 99999998765532211      0  011223689999


Q ss_pred             CCcEEEEEeCC--------CCCCCCCCCceEEEEecCccchhhcCCcccccccc--cCCC--eEecCceEEEcCCCcEEE
Q 026609          150 PGVEALIVSVD--------TQKPLPPNQLGEIWLRGPNMMRGYYNNEQATKLTI--DKKG--WVHTGDLGYFDGDGQLYV  217 (236)
Q Consensus       150 ~~~~~~~~~~~--------~~~~~~~g~~Gel~v~~~~~~~~~~~~~~~~~~~~--~~~~--~~~TgD~~~~~~~g~~~~  217 (236)
                      ++++++++|++        ++++++.|+.|||+++|+.++.||+++++.+...+  +.+|  ||+|||+++++++|++++
T Consensus       359 ~~~~~~ivd~~~~~~~~~~~~~~~~~g~~Gel~v~g~~~~~GY~~~~~~t~~~~~~~~~g~~w~~TGDlg~~d~dG~l~~  438 (552)
T PRK09274        359 DGVEVRIIAISDAPIPEWDDALRLATGEIGEIVVAGPMVTRSYYNRPEATRLAKIPDGQGDVWHRMGDLGYLDAQGRLWF  438 (552)
T ss_pred             CCceEEEEeccccccccccccccCCCCCeeEEEEecCcccccccCChHHhhhhhcccCCCCcEEEcCCEEEEccCCcEEE
Confidence            99999999852        46789999999999999999999999998887655  3456  999999999999999999


Q ss_pred             EcccCCceeeccEEeecCC
Q 026609          218 VDRIKELIKYKGFQVTSNW  236 (236)
Q Consensus       218 ~GR~~d~i~~~G~~i~p~~  236 (236)
                      .||.||+||++|++|+|+|
T Consensus       439 ~GR~~d~i~~~G~~v~p~e  457 (552)
T PRK09274        439 CGRKAHRVETAGGTLYTIP  457 (552)
T ss_pred             EeccCCeEEECCEEECcHH
Confidence            9999999999999999976

>PRK09088 acyl-CoA synthetase; Validated

Probab=100.00  E-value=3.5e-35  Score=250.41  Aligned_cols=225  Identities=28%  Similarity=0.450  Sum_probs=195.3

Q ss_pred             ccCCCCcEEEEecChhhHHhHHHHHHHHhhcCcEEEEcCCCCHHHHHHHHH--hcCceEEEeChHHHHHHHhcCCcCCCC
Q 026609            8 TAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIE--KHRVTHIWVVPPLILALAKHGLVKKFD   85 (236)
Q Consensus         8 ~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~--~~~~t~~~~~P~~~~~l~~~~~~~~~~   85 (236)
                      ....++|++++.+|++|.+|+...+..++..|+++++.+.+++..++..+.  ++++|.++++|+++..+.+........
T Consensus       171 ~~~~~~d~~l~~~pl~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~P~~~~~l~~~~~~~~~~  250 (488)
T PRK09088        171 GRVDAHSSFLCDAPMFHIIGLITSVRPVLAVGGSILVSNGFEPKRTLGRLGDPALGITHYFCVPQMAQAFRAQPGFDAAA  250 (488)
T ss_pred             hCCCCCcEEEEecchHHHHHHHHHHHHHHhcCCEEEEcCCCCHHHHHHHHHhhccCCcEEeeHHHHHHHHHhCcCcCccc
Confidence            456788999999999999999778889999999999988889999988886  489999999999999998776545556


Q ss_pred             CCCceEEeecCCCCCHHHHHHHHHhCCCCceeecccccccccccccccc-CCCCCCCCCCccccCCCcEEEEEeCCCCCC
Q 026609           86 LSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVGYGLTETSGIATMEN-SFAGSRNIGSAGALAPGVEALIVSVDTQKP  164 (236)
Q Consensus        86 l~~lr~i~~~G~~~~~~~~~~~~~~~~~~~v~~~~YG~tE~g~~~~~~~-~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~  164 (236)
                      ++++|.++++|++++.+..+.+.+.  +..+++ .||+||++.+..... +.....+.+.+|.|.++++++++| +++++
T Consensus       251 ~~~l~~~~~gG~~~~~~~~~~~~~~--g~~v~~-~YG~TE~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~i~d-~~~~~  326 (488)
T PRK09088        251 LRHLTALFTGGAPHAAEDILGWLDD--GIPMVD-GFGMSEAGTVFGMSVDCDVIRAKAGAAGIPTPTVQTRVVD-DQGND  326 (488)
T ss_pred             cccceEEEecCCCCCHHHHHHHHHh--CCceee-eecccccccccccCCCcccccccCCccccCCCCcEEEEEC-CCCCC
Confidence            7899999999999999988888765  478888 999999987543211 111123457799999999999998 57889


Q ss_pred             CCCCCceEEEEecCccchhhcCCcccccccccCCCeEecCceEEEcCCCcEEEEcccCCceeeccEEeecCC
Q 026609          165 LPPNQLGEIWLRGPNMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSNW  236 (236)
Q Consensus       165 ~~~g~~Gel~v~~~~~~~~~~~~~~~~~~~~~~~~~~~TgD~~~~~~~g~~~~~GR~~d~i~~~G~~i~p~~  236 (236)
                      ++.|+.|||+++++.++.+|+++++.+...+..+|||+|||+++++++|.+++.||.||+|+.+|++|+|+|
T Consensus       327 ~~~g~~Gel~v~~~~~~~gY~~~~~~~~~~~~~~g~~~TGDl~~~~~~g~l~i~GR~~d~i~~~G~~i~~~~  398 (488)
T PRK09088        327 CPAGVPGELLLRGPNLSPGYWRRPQATARAFTGDGWFRTGDIARRDADGFFWVVDRKKDMFISGGENVYPAE  398 (488)
T ss_pred             CcCCCceEEEEECCccchhhcCChhhhhhhhcCCCCeeecceEEEcCCCcEEEeccccceEEeCCEEECHHH
Confidence            999999999999999999999999988888877899999999999999999999999999999999999864

>PRK06710 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=2.8e-35  Score=255.09  Aligned_cols=221  Identities=39%  Similarity=0.700  Sum_probs=195.9

Q ss_pred             CCcEEEEecChhhHHhHHHHHHHHhhcCcEEEEcCCCCHHHHHHHHHhcCceEEEeChHHHHHHHhcCCcCCCCCCCceE
Q 026609           12 LDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSSLKL   91 (236)
Q Consensus        12 ~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~   91 (236)
                      .++++++++|++|.+|+...++.+++.|+++++.+++++..+++.++++++|.+.++|+.+..+++........++++|.
T Consensus       248 ~~~~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~  327 (563)
T PRK06710        248 GEEVVLGVLPFFHVYGMTAVMNLSIMQGYKMVLIPKFDMKMVFEAIKKHKVTLFPGAPTIYIALLNSPLLKEYDISSIRA  327 (563)
T ss_pred             CCceEEEeCchHHHHHHHHHHHHHHHcCCeEEEcCCCCHHHHHHHHHHcCCeEEeccHHHHHHHHcCCccccCChhhhhh
Confidence            34689999999999999777778999999999998899999999999999999999999999998876555557789999


Q ss_pred             EeecCCCCCHHHHHHHHHhCCCCceeeccccccccccccccccCCCCCCCCCCccccCCCcEEEEEeCCCCCCCCCCCce
Q 026609           92 VGSGAAPLGKELMEECAKNVPSATVIQVGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLG  171 (236)
Q Consensus        92 i~~~G~~~~~~~~~~~~~~~~~~~v~~~~YG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~g~~G  171 (236)
                      ++++|+++++++.+++.+.++ ..+++ .||+||++.+....... ....++.+|+|.+++.+++++++++++++.|+.|
T Consensus       328 v~~gg~~~~~~~~~~~~~~~~-~~~~~-~YG~tE~~~~~~~~~~~-~~~~~~~~G~~~~~~~~~i~~~~~~~~~~~g~~G  404 (563)
T PRK06710        328 CISGSAPLPVEVQEKFETVTG-GKLVE-GYGLTESSPVTHSNFLW-EKRVPGSIGVPWPDTEAMIMSLETGEALPPGEIG  404 (563)
T ss_pred             eeeCCCcCCHHHHHHHHHhhC-CCEec-ccccccCccccccCccc-ccccCCccCCCCCCCeEEEEECCCCccCCCCCce
Confidence            999999999999999999886 78888 99999998765432211 1233567899999999999998889999999999


Q ss_pred             EEEEecCccchhhcCCcccccccccCCCeEecCceEEEcCCCcEEEEcccCCceeeccEEeecCC
Q 026609          172 EIWLRGPNMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSNW  236 (236)
Q Consensus       172 el~v~~~~~~~~~~~~~~~~~~~~~~~~~~~TgD~~~~~~~g~~~~~GR~~d~i~~~G~~i~p~~  236 (236)
                      ||+++++.++.+|+++++.+...+ .+|||+|||+++++++|++++.||.||+|+++|.+|+|.|
T Consensus       405 el~v~g~~~~~gY~~~~~~~~~~~-~~g~~~TGD~~~~~~~g~~~~~GR~dd~i~~~G~~v~p~e  468 (563)
T PRK06710        405 EIVVKGPQIMKGYWNKPEETAAVL-QDGWLHTGDVGYMDEDGFFYVKDRKKDMIVASGFNVYPRE  468 (563)
T ss_pred             EEEEecCccchhhhCChHHHhhhc-ccCcccccceEEEcCCCcEEEeeccccEEEECCEEECHHH
Confidence            999999999999999998888777 6889999999999999999999999999999999999875

>PRK12492 long-chain-fatty-acid--CoA ligase; Provisional

Probab=100.00  E-value=4.4e-35  Score=253.88  Aligned_cols=220  Identities=32%  Similarity=0.568  Sum_probs=194.4

Q ss_pred             CcEEEEecChhhHHhHHHHHHHHhhcCcEEEEcC-CCCHHHHHHHHHhcCceEEEeChHHHHHHHhcCCcCCCCCCCceE
Q 026609           13 DYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSSLKL   91 (236)
Q Consensus        13 ~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~   91 (236)
                      +++++..+|++|.+++...++..++.|+..++.. +.++..+++.++++++|.+.++|+++..|++.......+++++|.
T Consensus       258 ~~~~~~~~pl~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~lr~  337 (562)
T PRK12492        258 QEVMIAPLPLYHIYAFTANCMCMMVSGNHNVLITNPRDIPGFIKELGKWRFSALLGLNTLFVALMDHPGFKDLDFSALKL  337 (562)
T ss_pred             CeEEEEecchHHHHHHHHHHHHHhhcCceEEEecCCcCHHHHHHHHHHhCCceeeCcHHHHHHHHhCcCcccccccceeE
Confidence            3678999999999999777778888888777654 568999999999999999999999999999887666667889999


Q ss_pred             EeecCCCCCHHHHHHHHHhCCCCceeeccccccccccccccccCCCCCCCCCCccccCCCcEEEEEeCCCCCCCCCCCce
Q 026609           92 VGSGAAPLGKELMEECAKNVPSATVIQVGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLG  171 (236)
Q Consensus        92 i~~~G~~~~~~~~~~~~~~~~~~~v~~~~YG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~g~~G  171 (236)
                      ++++|+++++++.+.|.+.++ .++++ .||+||++.++...... .....+.+|+|+++++++++| ++++++++|+.|
T Consensus       338 ~~~gG~~~~~~~~~~~~~~~~-~~~~~-~YG~tE~~~~~~~~~~~-~~~~~~~~G~p~~~~~v~ivd-~~~~~~~~g~~G  413 (562)
T PRK12492        338 TNSGGTALVKATAERWEQLTG-CTIVE-GYGLTETSPVASTNPYG-ELARLGTVGIPVPGTALKVID-DDGNELPLGERG  413 (562)
T ss_pred             EEeccccCCHHHHHHHHHHhC-Cceee-ccCccccCceeeecCCc-ccccCCccceecCCCEEEEEC-CCCCCCCCCCce
Confidence            999999999999999999886 88998 99999998876654322 133456789999999999999 478999999999


Q ss_pred             EEEEecCccchhhcCCcccccccccCCCeEecCceEEEcCCCcEEEEcccCCceeeccEEeecCC
Q 026609          172 EIWLRGPNMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSNW  236 (236)
Q Consensus       172 el~v~~~~~~~~~~~~~~~~~~~~~~~~~~~TgD~~~~~~~g~~~~~GR~~d~i~~~G~~i~p~~  236 (236)
                      ||+++++.++.+|+++++.+...|..++||+|||+++++++|.+++.||.||+|+++|++|+|.|
T Consensus       414 el~v~g~~~~~gY~~~~~~t~~~~~~~g~~~TGD~g~~~~~G~l~i~GR~~~~i~~~G~~i~~~e  478 (562)
T PRK12492        414 ELCIKGPQVMKGYWQQPEATAEALDAEGWFKTGDIAVIDPDGFVRIVDRKKDLIIVSGFNVYPNE  478 (562)
T ss_pred             EEEEeCCccccccccCchhhhhcccCCCceecCcEEEECCCCeEEEecccCCeEEECCEEECHHH
Confidence            99999999999999999998888866899999999999999999999999999999999999865

>PRK06188 acyl-CoA synthetase; Validated

Probab=100.00  E-value=2.6e-35  Score=253.29  Aligned_cols=225  Identities=34%  Similarity=0.527  Sum_probs=198.0

Q ss_pred             eeccCCCCcEEEEecChhhHHhHHHHHHHHhhcCcEEEEcCCCCHHHHHHHHHhcCceEEEeChHHHHHHHhcCCcCCCC
Q 026609            6 QETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFD   85 (236)
Q Consensus         6 ~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~   85 (236)
                      ..++..++|++++.+|++|.+++  .++.+++.|+++++.+.+++..+++.++++++|++.++|+.+..+++........
T Consensus       202 ~~~~~~~~~~~l~~~pl~~~~g~--~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~  279 (524)
T PRK06188        202 AEWEWPADPRFLMCTPLSHAGGA--FFLPTLLRGGTVIVLAKFDPAEVLRAIEEQRITATFLVPTMIYALLDHPDLRTRD  279 (524)
T ss_pred             hhcCCCcCcEEEEecCchhhhhH--HHHHHHHcCCEEEEcCCCCHHHHHHHHHHhCCEEEEehHHHHHHHHhCcCccCCC
Confidence            34567788999999999999887  3578899999999999999999999999999999999999999999887666678


Q ss_pred             CCCceEEeecCCCCCHHHHHHHHHhCCCCceeeccccccccccccccccCCC----CCCCCCCccccCCCcEEEEEeCCC
Q 026609           86 LSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVGYGLTETSGIATMENSFA----GSRNIGSAGALAPGVEALIVSVDT  161 (236)
Q Consensus        86 l~~lr~i~~~G~~~~~~~~~~~~~~~~~~~v~~~~YG~tE~g~~~~~~~~~~----~~~~~~~~g~p~~~~~~~~~~~~~  161 (236)
                      ++++|.++++|++++++..+.+.+.++ ..+.+ .||+||++..+.......    .......+|+|+++++++++|+ +
T Consensus       280 l~~lr~~~~gg~~~~~~~~~~~~~~~~-~~~~~-~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~G~p~~g~~v~i~~~-~  356 (524)
T PRK06188        280 LSSLETVYYGASPMSPVRLAEAIERFG-PIFAQ-YYGQTEAPMVITYLRKRDHDPDDPKRLTSCGRPTPGLRVALLDE-D  356 (524)
T ss_pred             CcceeEEEEcCCCCCHHHHHHHHHHhC-chhhh-eeCccccCCceeecCchhccccccccCCccccccCCcEEEEEcC-C
Confidence            899999999999999999999999887 66777 999999976555432211    1234567899999999999994 6


Q ss_pred             CCCCCCCCceEEEEecCccchhhcCCcccccccccCCCeEecCceEEEcCCCcEEEEcccCCceeeccEEeecCC
Q 026609          162 QKPLPPNQLGEIWLRGPNMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSNW  236 (236)
Q Consensus       162 ~~~~~~g~~Gel~v~~~~~~~~~~~~~~~~~~~~~~~~~~~TgD~~~~~~~g~~~~~GR~~d~i~~~G~~i~p~~  236 (236)
                      +++++.|+.|||+++++.++.+|++++..+...+ .+|||+|||+++++++|.+++.||.+|+++++|++|+|+|
T Consensus       357 ~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~-~~g~~~TGDl~~~~~~g~~~~~GR~~~~i~~~G~~i~~~~  430 (524)
T PRK06188        357 GREVAQGEVGEICVRGPLVMDGYWNRPEETAEAF-RDGWLHTGDVAREDEDGFYYIVDRKKDMIVTGGFNVFPRE  430 (524)
T ss_pred             CCCCCCCCeeEEEEECcchhhhhcCChHHhhhhh-cCCceeecceEEEcCCccEEEEeccccceecCCEEECHHH
Confidence            8999999999999999999999999998887777 6899999999999999999999999999999999999864

>PRK10946 entE enterobactin synthase subunit E; Provisional

Probab=100.00  E-value=2.6e-35  Score=253.96  Aligned_cols=227  Identities=26%  Similarity=0.381  Sum_probs=196.9

Q ss_pred             eeccCCCCcEEEEecChhhHHhHHH-HHHHHhhcCcEEEEcCCCCHHHHHHHHHhcCceEEEeChHHHHHHHhcC--CcC
Q 026609            6 QETAGELDYVFLCVLPLFHVFGLAV-ITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHG--LVK   82 (236)
Q Consensus         6 ~~~~~~~~d~~l~~~p~~~~~g~~~-~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~--~~~   82 (236)
                      ..++++++|++++.+|++|.+++.. .++.++..|+++++.+.+++..+++.+++++++.+.++|+++..+++..  ...
T Consensus       216 ~~~~~~~~~~~l~~~p~~h~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~~  295 (536)
T PRK10946        216 EICGFTPQTRYLCALPAAHNYPMSSPGALGVFLAGGTVVLAPDPSATLCFPLIEKHQVNVTALVPPAVSLWLQAIAEGGS  295 (536)
T ss_pred             HhcCCCCCceEEEecCccccccchhhhHHHHhhcCcEEEECCCCCHHHHHHHHHHhCCcEEEeChHHHHHHHhhhcccCc
Confidence            3566788999999999999988754 5788899999999998889999999999999999999999999998762  223


Q ss_pred             CCCCCCceEEeecCCCCCHHHHHHHHHhCCCCceeeccccccccccccccccCCCCCCCCCCccccC-CCcEEEEEeCCC
Q 026609           83 KFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVGYGLTETSGIATMENSFAGSRNIGSAGALA-PGVEALIVSVDT  161 (236)
Q Consensus        83 ~~~l~~lr~i~~~G~~~~~~~~~~~~~~~~~~~v~~~~YG~tE~g~~~~~~~~~~~~~~~~~~g~p~-~~~~~~~~~~~~  161 (236)
                      ...++++|.++++|+++++++.+.|.+.++ ..+++ .||+||+....... ..........+|+|+ +++.++++| ++
T Consensus       296 ~~~~~~l~~v~~gg~~l~~~~~~~~~~~~g-~~~~~-~YG~tE~~~~~~~~-~~~~~~~~~~~G~p~~~~~~v~i~d-~~  371 (536)
T PRK10946        296 RAQLASLKLLQVGGARLSETLARRIPAELG-CQLQQ-VFGMAEGLVNYTRL-DDSDERIFTTQGRPMSPDDEVWVAD-AD  371 (536)
T ss_pred             cccccceeEEEECCCCCCHHHHHHHHHhcC-CeEEE-eecccccceeeecC-CCccccccccCCcccCCCceEEEEC-CC
Confidence            446789999999999999999999999886 88988 99999965443321 111123456789998 789999999 57


Q ss_pred             CCCCCCCCceEEEEecCccchhhcCCcccccccccCCCeEecCceEEEcCCCcEEEEcccCCceeeccEEeecCC
Q 026609          162 QKPLPPNQLGEIWLRGPNMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSNW  236 (236)
Q Consensus       162 ~~~~~~g~~Gel~v~~~~~~~~~~~~~~~~~~~~~~~~~~~TgD~~~~~~~g~~~~~GR~~d~i~~~G~~i~p~~  236 (236)
                      ++++++|+.|||+++|+.++.+|+++++.+...+..++||+|||+++++++|++++.||.+|+++++|++|+|.|
T Consensus       372 ~~~~~~g~~Gel~v~g~~~~~GY~~~~~~t~~~~~~d~~~~TGDl~~~d~~G~l~~~gR~~d~i~~~G~~v~~~e  446 (536)
T PRK10946        372 GNPLPQGEVGRLMTRGPYTFRGYYKSPQHNASAFDANGFYCSGDLVSIDPDGYITVVGREKDQINRGGEKIAAEE  446 (536)
T ss_pred             CCCCCCCCccEEEEecCccchhhcCCcccchhhcccCCceecCceEEECCCCcEEEeccccceeecCCEEEcHHH
Confidence            899999999999999999999999999999888878899999999999999999999999999999999999864

>PRK07786 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=4.8e-35  Score=252.60  Aligned_cols=221  Identities=31%  Similarity=0.499  Sum_probs=195.4

Q ss_pred             CCCcEEEEecChhhHHhHHHHHHHHhhcCcEEEEcC--CCCHHHHHHHHHhcCceEEEeChHHHHHHHhcCCcCCCCCCC
Q 026609           11 ELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA--KFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSS   88 (236)
Q Consensus        11 ~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~--~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~   88 (236)
                      .++|+++..+|++|.+|+ ..++.++..|+++++.+  .+++..+++.++++++|.++++|+++..+.+........ .+
T Consensus       214 ~~~~~~~~~~p~~~~~g~-~~~~~~l~~G~~~v~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~-~~  291 (542)
T PRK07786        214 INSDVGFVGVPLFHIAGI-GSMLPGLLLGAPTVIYPLGAFDPGQLLDVLEAEKVTGIFLVPAQWQAVCAEQQARPRD-LA  291 (542)
T ss_pred             CCCceEEEecchHHHHHH-HHHHHHHHccCEEEEccCCCcCHHHHHHHHHHcCCeEEEehHHHHHHHHhCcccCccC-cc
Confidence            567999999999999999 77889999999999865  578999999999999999999999999998876543333 36


Q ss_pred             ceEEeecCCCCCHHHHHHHHHhCCCCceeeccccccccccccccccCCCCCCCCCCccccCCCcEEEEEeCCCCCCCCCC
Q 026609           89 LKLVGSGAAPLGKELMEECAKNVPSATVIQVGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPN  168 (236)
Q Consensus        89 lr~i~~~G~~~~~~~~~~~~~~~~~~~v~~~~YG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~g  168 (236)
                      +|.++++|+++++++++.+.+.+++..+++ .||+||++.+...............+|+|++++.++++| +++++++.|
T Consensus       292 lr~i~~gg~~~~~~~~~~~~~~~~~~~l~~-~YG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d-~~~~~~~~g  369 (542)
T PRK07786        292 LRVLSWGAAPASDTLLRQMAATFPEAQILA-AFGQTEMSPVTCMLLGEDAIRKLGSVGKVIPTVAARVVD-ENMNDVPVG  369 (542)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHcCCCeEEe-eecccccccceEecCcccccccCCCccccCCCceEEEEC-CCCCCCcCC
Confidence            999999999999999999999998788888 999999987765443332334567899999999999999 578999999


Q ss_pred             CceEEEEecCccchhhcCCcccccccccCCCeEecCceEEEcCCCcEEEEcccCCceeeccEEeecCC
Q 026609          169 QLGEIWLRGPNMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSNW  236 (236)
Q Consensus       169 ~~Gel~v~~~~~~~~~~~~~~~~~~~~~~~~~~~TgD~~~~~~~g~~~~~GR~~d~i~~~G~~i~p~~  236 (236)
                      +.|||+++|+.++.+|+++++.+...| .++||+|||+++++++|.+++.||.||+|+++|++|+|.|
T Consensus       370 ~~Gel~v~g~~~~~gy~~~~~~~~~~f-~~~~~~TGDl~~~~~~g~~~i~GR~~d~i~~~G~~v~~~e  436 (542)
T PRK07786        370 EVGEIVYRAPTLMSGYWNNPEATAEAF-AGGWFHSGDLVRQDEEGYVWVVDRKKDMIISGGENIYCAE  436 (542)
T ss_pred             CceEEEEEChhhhhhhcCCHHHHHHHh-hCCcccccceEEEcCCceEEEEecccceEEeCCEEECHHH
Confidence            999999999999999999999888877 6799999999999999999999999999999999999864

>TIGR01733 AA-adenyl-dom amino acid adenylation domain

Probab=100.00  E-value=5.3e-35  Score=243.77  Aligned_cols=225  Identities=25%  Similarity=0.331  Sum_probs=195.2

Q ss_pred             eeccCCCCcEEEEecChhhHHhHHHHHHHHhhcCcEEEEcCCCC---HHHHHHHHHhcCceEEEeChHHHHHHHhcCCcC
Q 026609            6 QETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFD---LEMFLRAIEKHRVTHIWVVPPLILALAKHGLVK   82 (236)
Q Consensus         6 ~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~---~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~   82 (236)
                      +.+...++|++++..|++|.+++ ..++.++..|+++++.+...   +..+.+.++++++|.+.++|+.++.|++...  
T Consensus       154 ~~~~~~~~~~~~~~~p~~~~~~~-~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~~p~~~~~l~~~~~--  230 (408)
T TIGR01733       154 RRYGLDPDDRVLQFASLSFDASV-EEIFGTLLAGATLVVPPEDEERDAALLAALIAEHPVTVLNLTPSLLALLAAALP--  230 (408)
T ss_pred             HhcCCCCCceEEEecCCccchhH-HHHHHHHhCCCEEEEcChhhccCHHHHHHHHHHcCceEEEeCHHHHHHHHHhhh--
Confidence            35667788999999999999998 68899999999999987543   6889999999999999999999999988754  


Q ss_pred             CCCCCCceEEeecCCCCCHHHHHHHHHhCCCCceeeccccccccccccccccCC-CCCC--CCCCccccCCCcEEEEEeC
Q 026609           83 KFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVGYGLTETSGIATMENSF-AGSR--NIGSAGALAPGVEALIVSV  159 (236)
Q Consensus        83 ~~~l~~lr~i~~~G~~~~~~~~~~~~~~~~~~~v~~~~YG~tE~g~~~~~~~~~-~~~~--~~~~~g~p~~~~~~~~~~~  159 (236)
                       ..++++|.++.+|+++++++.+.|.+.++...+++ .||+||++.++...... ....  ....+|.|.++++++++++
T Consensus       231 -~~~~~l~~v~~~g~~~~~~~~~~~~~~~~~~~i~~-~YG~tE~g~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~~  308 (408)
T TIGR01733       231 -PALASLRLVILGGEALTPALVDRWRARGPGARLIN-LYGPTETTVWSTATLVDADDAPRESPVPIGRPLANTRLYVLDD  308 (408)
T ss_pred             -hcccCceEEEEeCccCCHHHHHHHHHhCCCcEEEe-cccCCceEEEEEEEEcCccccCCccccccCcccCCceEEEECC
Confidence             56789999999999999999999999998678888 99999999877532221 1111  2667999999999999996


Q ss_pred             CCCCCCCCCCceEEEEecCccchhhcCCcccccccccCC------C--eEecCceEEEcCCCcEEEEcccCCceeeccEE
Q 026609          160 DTQKPLPPNQLGEIWLRGPNMMRGYYNNEQATKLTIDKK------G--WVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQ  231 (236)
Q Consensus       160 ~~~~~~~~g~~Gel~v~~~~~~~~~~~~~~~~~~~~~~~------~--~~~TgD~~~~~~~g~~~~~GR~~d~i~~~G~~  231 (236)
                      + ++++++|+.|||+++++.++.+|+++++.+...+...      +  ||+|||+++++++|++++.||.+|+++++|++
T Consensus       309 ~-~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~TGDl~~~d~~g~~~~~gR~~~~i~~~G~~  387 (408)
T TIGR01733       309 D-LRPVPVGVVGELYIGGPGVARGYLNRPELTAERFVPDPFAGGDGARLYRTGDLVRYLPDGNLEFLGRIDDQVKIRGYR  387 (408)
T ss_pred             C-CCCCCCCCceEEEecCccccccccCChhhhhcceeeCCCCCCCCceEEECCceEEEcCCCCEEEeeccCCEEEeCeEE
Confidence            4 8999999999999999999999999988887766332      2  99999999999999999999999999999999


Q ss_pred             eecCC
Q 026609          232 VTSNW  236 (236)
Q Consensus       232 i~p~~  236 (236)
                      ++|+|
T Consensus       388 v~~~~  392 (408)
T TIGR01733       388 IELGE  392 (408)
T ss_pred             echHH
Confidence            99975

This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group.

>KOG1175 consensus Acyl-CoA synthetase [Lipid transport and metabolism]

Probab=100.00  E-value=1.7e-35  Score=249.45  Aligned_cols=232  Identities=26%  Similarity=0.409  Sum_probs=203.5

Q ss_pred             eeeeeccCCCCcEEEEecChhhHHhHHHHHHHHhhcCcEEEEcC--CCCHHHHHHHHHhcCceEEEeChHHHHHHHhcCC
Q 026609            3 TMDQETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA--KFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGL   80 (236)
Q Consensus         3 ~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~--~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~   80 (236)
                      .....++++++|+++++..+.|+.|.+..++++|.+|+|+++.+  ++++..+++++.++++|.+...|+.++.|.+...
T Consensus       271 ~~~~~~d~q~~dv~~~~~d~GWi~g~~~~~~gpl~~Ga~~vl~~g~p~~~~~~~~~v~k~~it~l~t~pt~~r~l~~~~~  350 (626)
T KOG1175|consen  271 TSRYHFDLQPSDVLWCASDLGWITGHSYVLYGPLLNGATVVLYEGPPFDPGRIWKILDKYKVTVLYTAPTAYRLLRRLGQ  350 (626)
T ss_pred             hcceeccCCCcceEEEecccCeeeccchhhhhhhhcCcEEEEEcCCCCChhhhhhhHhhcceEEEEeccHHHHHHHHhcc
Confidence            44567899999999999999999999999999999999999986  4689999999999999999999999998877654


Q ss_pred             c--CCCCCCCceEEeecCCCCCHHHHHHHHHhCCCCceeeccccccccccccccccCCCCCCCCCCccccCCCcEEEEEe
Q 026609           81 V--KKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVS  158 (236)
Q Consensus        81 ~--~~~~l~~lr~i~~~G~~~~~~~~~~~~~~~~~~~v~~~~YG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~  158 (236)
                      .  ...++++||.+.++||++.++.++++.+.++.-.|.+ .||+||+|..++.+.......+++.++.|+++.++.++|
T Consensus       351 ~~~~~~~~~sLk~~~S~Gepi~~~~~ew~~~~~~~~pv~e-~~~qtEtG~~~i~~~~g~~p~~pg~~~~p~~g~~v~i~d  429 (626)
T KOG1175|consen  351 EDVTSYSLKSLRTCGSVGEPINPEAWEWWKRVTGLDPIYE-TYGQTETGGICITPKPGKLPIKPGSAGKPFPGYDVQILD  429 (626)
T ss_pred             ccccccccceEEEEeecCccCCcchHHHHHHhcCccchhh-ceeeeccCceeeeccCCCCCcCccccCCCCCCcceEEEC
Confidence            3  3344467999999999999999999999998446888 999999999988754432257889999999999999999


Q ss_pred             CCCCCCCCCC-CceEEEEec--C-ccchhhcCCcccccccccC--CCeEecCceEEEcCCCcEEEEcccCCceeeccEEe
Q 026609          159 VDTQKPLPPN-QLGEIWLRG--P-NMMRGYYNNEQATKLTIDK--KGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV  232 (236)
Q Consensus       159 ~~~~~~~~~g-~~Gel~v~~--~-~~~~~~~~~~~~~~~~~~~--~~~~~TgD~~~~~~~g~~~~~GR~~d~i~~~G~~i  232 (236)
                       +.|++++.+ ..|+|+++.  | .+++++|+|++.....+..  .|+|.|||.+++|+||++++.||.||+||++|.++
T Consensus       430 -e~g~~~~~~~~~G~l~~~~~~P~~~~r~~~~n~erf~~~yf~k~pg~y~tGD~~~rd~dGY~~i~GR~DDviNvsGhRi  508 (626)
T KOG1175|consen  430 -ENGNELPPSTGNGELRLKPPWPPGMFRTLWGNHERFRAAYFKKFPGYYFTGDGGRRDEDGYYWILGRVDDVINVSGHRI  508 (626)
T ss_pred             -CCCCCcCCCCceeEEEEeCCCCccccccccCCHHHhhhhhcccCCceEEecCceEEcCCceEEEEecccccccccceee
Confidence             488888876 889999987  3 7789999999966655544  78999999999999999999999999999999999


Q ss_pred             ecCC
Q 026609          233 TSNW  236 (236)
Q Consensus       233 ~p~~  236 (236)
                      +++|
T Consensus       509 gtaE  512 (626)
T KOG1175|consen  509 GTAE  512 (626)
T ss_pred             cHHH
Confidence            9876

>PRK05852 acyl-CoA synthetase; Validated

Probab=100.00  E-value=5.5e-35  Score=251.84  Aligned_cols=226  Identities=28%  Similarity=0.466  Sum_probs=194.1

Q ss_pred             eeccCCCCcEEEEecChhhHHhHHHHHHHHhhcCcEEEEcC--CCCHHHHHHHHHhcCceEEEeChHHHHHHHhcCCcC-
Q 026609            6 QETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA--KFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVK-   82 (236)
Q Consensus         6 ~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~--~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~-   82 (236)
                      ..+++.++|++++.+|++|.+|+...++.++..|+++++.+  .+++..+++.++++++|.++++|+++..|.+..... 
T Consensus       210 ~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~  289 (534)
T PRK05852        210 TGYRLSPRDATVAVMPLYHGHGLIAALLATLASGGAVLLPARGRFSAHTFWDDIKAVGATWYTAVPTIHQILLERAATEP  289 (534)
T ss_pred             HHhCCCCcceEEEecCcchhHHHHHHHHHHHhcCCeEEeCCCcCcCHHHHHHHHHHcCCcEEEcChHHHHHHHhhccccc
Confidence            45677889999999999999999888999999999998865  478999999999999999999999999998865432 


Q ss_pred             -CCCCCCceEEeecCCCCCHHHHHHHHHhCCCCceeeccccccccccccccccCCC------CCCCCCCccccCCCcEEE
Q 026609           83 -KFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVGYGLTETSGIATMENSFA------GSRNIGSAGALAPGVEAL  155 (236)
Q Consensus        83 -~~~l~~lr~i~~~G~~~~~~~~~~~~~~~~~~~v~~~~YG~tE~g~~~~~~~~~~------~~~~~~~~g~p~~~~~~~  155 (236)
                       ...++++|.++++|+++++++++++.+.++ ..+++ .||+||++..++......      .....+..|. .++++++
T Consensus       290 ~~~~~~~lr~i~~~G~~~~~~~~~~~~~~~~-~~v~~-~YG~tE~~~~~~~~~~~~~~~~~~~~~~~g~~g~-~~g~~~~  366 (534)
T PRK05852        290 SGRKPAALRFIRSCSAPLTAETAQALQTEFA-APVVC-AFGMTEATHQVTTTQIEGIGQTENPVVSTGLVGR-STGAQIR  366 (534)
T ss_pred             ccccCCCeeEEEECCCCCCHHHHHHHHHHhC-CChhh-ccCccccchhhhcCCccccccccCcccccccCCC-CCCCeEE
Confidence             335679999999999999999999999997 78888 999999987665432210      1112233344 6899999


Q ss_pred             EEeCCCCCCCCCCCceEEEEecCccchhhcCCcccccccccCCCeEecCceEEEcCCCcEEEEcccCCceeeccEEeecC
Q 026609          156 IVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSN  235 (236)
Q Consensus       156 ~~~~~~~~~~~~g~~Gel~v~~~~~~~~~~~~~~~~~~~~~~~~~~~TgD~~~~~~~g~~~~~GR~~d~i~~~G~~i~p~  235 (236)
                      ++| ++++++++|+.|||+++++.++.+|+++++.+...+ .+|||+|||++++|+||++++.||++|+||++|.+|+|.
T Consensus       367 i~d-~~g~~~~~g~~Gel~v~g~~v~~gY~~~~~~t~~~~-~~g~~~TGD~~~~d~dG~l~~~gR~~d~i~~~G~~v~~~  444 (534)
T PRK05852        367 IVG-SDGLPLPAGAVGEVWLRGTTVVRGYLGDPTITAANF-TDGWLRTGDLGSLSAAGDLSIRGRIKELINRGGEKISPE  444 (534)
T ss_pred             EEC-CCCCCCCCCCceEEEEecCcccchhcCCcccchhhh-cCCCcccCceEEEeCCCcEEEEecchhhEEECCEEECHH
Confidence            999 468999999999999999999999999999988877 678999999999999999999999999999999999986


Q ss_pred             C
Q 026609          236 W  236 (236)
Q Consensus       236 ~  236 (236)
                      |
T Consensus       445 ~  445 (534)
T PRK05852        445 R  445 (534)
T ss_pred             H
Confidence            5

>PRK12467 peptide synthase; Provisional

Probab=100.00  E-value=2.3e-35  Score=295.10  Aligned_cols=228  Identities=20%  Similarity=0.300  Sum_probs=200.3

Q ss_pred             eeeeccCCCCcEEEEecChhhHHhHHHHHHHHhhcCcEEEEcCC--CCHHHHHHHHHhcCceEEEeChHHHHHHHhcCCc
Q 026609            4 MDQETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK--FDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLV   81 (236)
Q Consensus         4 ~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~--~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~   81 (236)
                      +...++..++|++++++|+.|..+. ..++.++..|+++++.+.  +++..+++.++++++|++.++|++++.+++..  
T Consensus      3269 ~~~~~~~~~~d~~l~~~~~~fd~~~-~~~~~~L~~G~~l~i~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~l~~l~~~~-- 3345 (3956)
T PRK12467       3269 IAEAYELDANDRVLLFMSFSFDGAQ-ERFLWTLICGGCLVVRDNDLWDPEELWQAIHAHRISIACFPPAYLQQFAEDA-- 3345 (3956)
T ss_pred             HHHhcCCCcCCEEEEecCccHhHHH-HHHHHHHhCCCEEEECCcccCCHHHHHHHHHHcCCEEEEcCHHHHHHHHhcc--
Confidence            3456788899999999999999887 788999999999999885  78999999999999999999999999998753  


Q ss_pred             CCCCCCCceEEeecCCCCCHHHHHHHHHhCCCCceeeccccccccccccccccCCC---CCCCCCCccccCCCcEEEEEe
Q 026609           82 KKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVGYGLTETSGIATMENSFA---GSRNIGSAGALAPGVEALIVS  158 (236)
Q Consensus        82 ~~~~l~~lr~i~~~G~~~~~~~~~~~~~~~~~~~v~~~~YG~tE~g~~~~~~~~~~---~~~~~~~~g~p~~~~~~~~~~  158 (236)
                      ....++++|.+++|||++++++.+.|.+.+++..+++ .||+||++..++......   .......+|+|+++++++++|
T Consensus      3346 ~~~~~~~lr~~~~gGe~~~~~~~~~~~~~~~~~~l~n-~YG~TE~~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~v~d 3424 (3956)
T PRK12467       3346 GGADCASLDIYVFGGEAVPPAAFEQVKRKLKPRGLTN-GYGPTEAVVTVTLWKCGGDAVCEAPYAPIGRPVAGRSIYVLD 3424 (3956)
T ss_pred             cccCCCCceEEEEecCCCCHHHHHHHHHhCCCCEEEe-CcccchhEeeeEEEecccccccCCCCCCCccccCCCEEEEEC
Confidence            3446789999999999999999999999887778888 999999987665432211   112335789999999999998


Q ss_pred             CCCCCCCCCCCceEEEEecCccchhhcCCcccccccccCC-------CeEecCceEEEcCCCcEEEEcccCCceeeccEE
Q 026609          159 VDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQATKLTIDKK-------GWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQ  231 (236)
Q Consensus       159 ~~~~~~~~~g~~Gel~v~~~~~~~~~~~~~~~~~~~~~~~-------~~~~TgD~~~~~~~g~~~~~GR~~d~i~~~G~~  231 (236)
                       +.++++|.|+.|||+|+|+.++.||+++++.+...|..+       +||+|||++++++||.++++||+||+||++|++
T Consensus      3425 -~~~~~vp~G~~GEL~i~G~~v~~GY~~~~~~T~~~F~~~p~~~~g~r~yrTGDl~~~~~dG~l~~~GR~d~~iki~G~r 3503 (3956)
T PRK12467       3425 -GQLNPVPVGVAGELYIGGVGLARGYHQRPSLTAERFVADPFSGSGGRLYRTGDLARYRADGVIEYLGRIDHQVKIRGFR 3503 (3956)
T ss_pred             -CCCCCCCCCCCceEEEcchhhhhhccCCcccchhhccCCCCCCCCceeeccchhheecCCCcEEEeccccceEeeceEe
Confidence             679999999999999999999999999999999888544       369999999999999999999999999999999


Q ss_pred             eecCC
Q 026609          232 VTSNW  236 (236)
Q Consensus       232 i~p~~  236 (236)
                      |+|.|
T Consensus      3504 Ie~~E 3508 (3956)
T PRK12467       3504 IELGE 3508 (3956)
T ss_pred             ecHHH
Confidence            99975

>PRK06187 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=6.9e-35  Score=250.12  Aligned_cols=226  Identities=38%  Similarity=0.575  Sum_probs=200.3

Q ss_pred             eeccCCCCcEEEEecChhhHHhHHHHHHHHhhcCcEEEEcCCCCHHHHHHHHHhcCceEEEeChHHHHHHHhcCCcCCCC
Q 026609            6 QETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFD   85 (236)
Q Consensus         6 ~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~   85 (236)
                      ..++..++|++++.+|++|..++... +.++..|+++++.+.+++..+++.++++++|.++++|++++.|.+..+.....
T Consensus       201 ~~~~~~~~d~~~~~~~~~~~~~~~~~-~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~~~~~  279 (521)
T PRK06187        201 AWLKLSRDDVYLVIVPMFHVHAWGLP-YLALMAGAKQVIPRRFDPENLLDLIETERVTFFFAVPTIWQMLLKAPRAYFVD  279 (521)
T ss_pred             HhhCCCCCCEEEEeCCchHHhhHHHH-HHHHHhCCEEEecCCCCHHHHHHHHHHhCCeEEEchHHHHHHHHcCcCCCccC
Confidence            35678889999999999999999544 45999999999998889999999999999999999999999999988766778


Q ss_pred             CCCceEEeecCCCCCHHHHHHHHHhCCCCceeeccccccccccccccccCCCC----CCCCCCccccCCCcEEEEEeCCC
Q 026609           86 LSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVGYGLTETSGIATMENSFAG----SRNIGSAGALAPGVEALIVSVDT  161 (236)
Q Consensus        86 l~~lr~i~~~G~~~~~~~~~~~~~~~~~~~v~~~~YG~tE~g~~~~~~~~~~~----~~~~~~~g~p~~~~~~~~~~~~~  161 (236)
                      ++++|.++.+|+++++++.++|.+.++ ..+++ .||+||++.++........    ......+|.|++++.++++|+ +
T Consensus       280 ~~~l~~v~~~Ge~l~~~~~~~~~~~~~-~~v~~-~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~~-~  356 (521)
T PRK06187        280 FSSLRLVIYGGAALPPALLREFKEKFG-IDLVQ-GYGMTETSPVVSVLPPEDQLPGQWTKRRSAGRPLPGVEARIVDD-D  356 (521)
T ss_pred             cchhhEEEEcCcCCCHHHHHHHHHHhC-cchhe-eeccCccCcccccCCcccccccccccCCccccccCCeEEEEECC-C
Confidence            899999999999999999999999984 88998 9999999877665433221    125678999999999999994 6


Q ss_pred             CCCCCC--CCceEEEEecCccchhhcCCcccccccccCCCeEecCceEEEcCCCcEEEEcccCCceeeccEEeecCC
Q 026609          162 QKPLPP--NQLGEIWLRGPNMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSNW  236 (236)
Q Consensus       162 ~~~~~~--g~~Gel~v~~~~~~~~~~~~~~~~~~~~~~~~~~~TgD~~~~~~~g~~~~~GR~~d~i~~~G~~i~p~~  236 (236)
                      +++++.  |+.|||+++++.+..+|+.+++.+...+ .++||+|||+++++++|.+++.||.||++|++|.+++|.+
T Consensus       357 ~~~~~~~~g~~Gel~v~~~~~~~~y~~~~~~~~~~~-~~~~~~tGD~~~~~~~g~~~~~GR~~~~i~~~G~~v~~~~  432 (521)
T PRK06187        357 GDELPPDGGEVGEIIVRGPWLMQGYWNRPEATAETI-DGGWLHTGDVGYIDEDGYLYITDRIKDVIISGGENIYPRE  432 (521)
T ss_pred             CCCCCCCCCCeeEEEEECcchhhhhcCCHHHHHHHh-hCCceeccceEEEcCCCCEEEeecccceEEcCCeEECHHH
Confidence            788888  9999999999999999999988888777 5679999999999999999999999999999999999863

>TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase

Probab=100.00  E-value=4e-35  Score=276.31  Aligned_cols=228  Identities=18%  Similarity=0.167  Sum_probs=194.5

Q ss_pred             eeeeccCCCCcEEEEecChhhHHhHHHHHHHHhhcCcEEEEcCC---CCHHHHHHHHHhcCceEEEeChHHHHHHHhcCC
Q 026609            4 MDQETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK---FDLEMFLRAIEKHRVTHIWVVPPLILALAKHGL   80 (236)
Q Consensus         4 ~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~---~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~   80 (236)
                      +...+++.++|+++..+|++|..++ ..++.+++.|+++++.+.   .++..+++.++++++|.++++|++++.|.... 
T Consensus       447 ~~~~~~~~~~d~~~~~~~~~~d~~~-~~i~~~L~~G~~l~~~~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~-  524 (1389)
T TIGR03443       447 MAKRFGLSENDKFTMLSGIAHDPIQ-RDMFTPLFLGAQLLVPTADDIGTPGRLAEWMAKYGATVTHLTPAMGQLLSAQA-  524 (1389)
T ss_pred             HHHhcCCCCCCEEEEecCceecchH-HHHHHHHhCCCEEEEcChhhccCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcc-
Confidence            3455778889999999999999888 788999999999999874   36889999999999999999999999887543 


Q ss_pred             cCCCCCCCceEEeecCCCCCHHHHHHHHHhCCCCceeeccccccccccccccccCCCC---------CCCCCCccccCCC
Q 026609           81 VKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVGYGLTETSGIATMENSFAG---------SRNIGSAGALAPG  151 (236)
Q Consensus        81 ~~~~~l~~lr~i~~~G~~~~~~~~~~~~~~~~~~~v~~~~YG~tE~g~~~~~~~~~~~---------~~~~~~~g~p~~~  151 (236)
                        ...++++|.++++|++++++..+.+.+..++..+++ .||+||++..+........         ......+|+|+++
T Consensus       525 --~~~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n-~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~  601 (1389)
T TIGR03443       525 --TTPIPSLHHAFFVGDILTKRDCLRLQTLAENVCIVN-MYGTTETQRAVSYFEIPSRSSDSTFLKNLKDVMPAGKGMKN  601 (1389)
T ss_pred             --cccCCCccEEEEecccCCHHHHHHHHHhCCCCEEEE-CccCCccceeEEEEEccccccccchhhcccCcCcCCCccCC
Confidence              235789999999999999999999998887788888 9999999876654221110         1123468999999


Q ss_pred             cEEEEEeCCC-CCCCCCCCceEEEEecCccchhhcCCccccccccc----------------------------CCCeEe
Q 026609          152 VEALIVSVDT-QKPLPPNQLGEIWLRGPNMMRGYYNNEQATKLTID----------------------------KKGWVH  202 (236)
Q Consensus       152 ~~~~~~~~~~-~~~~~~g~~Gel~v~~~~~~~~~~~~~~~~~~~~~----------------------------~~~~~~  202 (236)
                      +++.++|+++ +++++.|+.|||+|+|+.++.||+++++.+...|.                            .++||+
T Consensus       602 ~~~~ivd~~~~~~~~~~G~~GEL~i~G~~v~~GY~~~p~~t~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~  681 (1389)
T TIGR03443       602 VQLLVVNRNDRTQTCGVGEVGEIYVRAGGLAEGYLGLPELNAEKFVNNWFVDPSHWIDLDKENNKPEREFWLGPRDRLYR  681 (1389)
T ss_pred             CEEEEECCccCCCcCCCCCceEEEecccccchhcCCChhHhhhhccCCcccCcccccccccccccccccccCCCccceee
Confidence            9999999543 57899999999999999999999999998877762                            257999


Q ss_pred             cCceEEEcCCCcEEEEcccCCceeeccEEeecCC
Q 026609          203 TGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSNW  236 (236)
Q Consensus       203 TgD~~~~~~~g~~~~~GR~~d~i~~~G~~i~p~~  236 (236)
                      |||++++++||.++|.||.||+||++|+||+|.|
T Consensus       682 TGDlg~~~~dG~l~~~GR~dd~Iki~G~rI~p~e  715 (1389)
T TIGR03443       682 TGDLGRYLPDGNVECCGRADDQVKIRGFRIELGE  715 (1389)
T ss_pred             cCCceeEcCCCCEEEecccCCEEEeCcEEecHHH
Confidence            9999999999999999999999999999999975

Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal.

>PRK07769 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=1.3e-35  Score=260.24  Aligned_cols=228  Identities=26%  Similarity=0.397  Sum_probs=185.2

Q ss_pred             eeccCCCCcEEEEecChhhHHhHHHHHHHHhhcCcEEEEcCC--C--CHHHHHHHHHhcCc---eEEEeChHHHHHHHhc
Q 026609            6 QETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK--F--DLEMFLRAIEKHRV---THIWVVPPLILALAKH   78 (236)
Q Consensus         6 ~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~--~--~~~~~~~~i~~~~~---t~~~~~P~~~~~l~~~   78 (236)
                      ..++..++|++++.+|++|.+|+. .++.+++.|+++++.++  +  ++..+++.++++++   +.+.++|+++..+...
T Consensus       214 ~~~~~~~~d~~l~~~Pl~h~~gl~-~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~p~~~~~l~~~  292 (631)
T PRK07769        214 DALEGQEGDRGVSWLPFFHDMGLI-TVLLPALLGHYITFMSPAAFVRRPGRWIRELARKPGGTGGTFSAAPNFAFEHAAA  292 (631)
T ss_pred             HHcCCCCcceEEEeCCCcCchhhH-HHHHHHhhCCeEEEEChHHHHhCHHHHHHHHHhhccccCceEeeCCchHHHHHHh
Confidence            345677889999999999999995 45566777888887753  4  88899999999886   7888999987776543


Q ss_pred             ---CC--cCCCCCCCceEEeecCCCCCHHHHHHHHHhCC-----CCceeeccccccccccccccccCCCCC---------
Q 026609           79 ---GL--VKKFDLSSLKLVGSGAAPLGKELMEECAKNVP-----SATVIQVGYGLTETSGIATMENSFAGS---------  139 (236)
Q Consensus        79 ---~~--~~~~~l~~lr~i~~~G~~~~~~~~~~~~~~~~-----~~~v~~~~YG~tE~g~~~~~~~~~~~~---------  139 (236)
                         ..  ....+++++|.+++||+++++++.++|.+.|+     ...+.+ .||+||++..++........         
T Consensus       293 ~~~~~~~~~~~~l~~lr~~~~gg~~l~~~~~~~~~~~~~~~g~~~~~i~~-~YG~TE~~~~~~~~~~~~~~~~~~~~~~~  371 (631)
T PRK07769        293 RGLPKDGEPPLDLSNVKGLLNGSEPVSPASMRKFNEAFAPYGLPPTAIKP-SYGMAEATLFVSTTPMDEEPTVIYVDRDE  371 (631)
T ss_pred             hccchhcccCcchhheeeEEeccCCCCHHHHHHHHHHHhhcCCChhhccc-ccchhhheeEEeccCCCCCceEEEEcHHH
Confidence               11  12447889999999999999999999999873     234777 99999997655543211100         


Q ss_pred             ----------------CCCCCccccCCCcEEEEEeCCCCCCCCCCCceEEEEecCccchhhcCCccccccccc-------
Q 026609          140 ----------------RNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQATKLTID-------  196 (236)
Q Consensus       140 ----------------~~~~~~g~p~~~~~~~~~~~~~~~~~~~g~~Gel~v~~~~~~~~~~~~~~~~~~~~~-------  196 (236)
                                      .....+|+|.++..++++|++++++++.|+.|||+++|+.++.||+++++.+...|.       
T Consensus       372 ~~~~~~~~v~~~~~~~~~~~s~G~~~~~~~~~ivd~~~g~~~~~ge~GEl~v~gp~v~~GY~~~~~~t~~~f~~~~~~~~  451 (631)
T PRK07769        372 LNAGRFVEVPADAPNAVAQVSAGKVGVSEWAVIVDPETASELPDGQIGEIWLHGNNIGTGYWGKPEETAATFQNILKSRL  451 (631)
T ss_pred             HhCCCeEecCCCCCCceeEEeCCCcCCCcEEEEEcCCCCcCCCCCCEEEEEecCCCccccccCChhHHHHHHhhhccccc
Confidence                            012368999999999999977899999999999999999999999999988877763       


Q ss_pred             ----------CCCeEecCceEEEcCCCcEEEEcccCCceeeccEEeecCC
Q 026609          197 ----------KKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSNW  236 (236)
Q Consensus       197 ----------~~~~~~TgD~~~~~~~g~~~~~GR~~d~i~~~G~~i~p~~  236 (236)
                                .+|||+|||++++ ++|+++|+||.||+||++|+||+|.|
T Consensus       452 ~~~~~~~~~~~~gw~~TGDlg~~-~dG~l~i~GR~~d~Ik~~G~~V~p~e  500 (631)
T PRK07769        452 SESHAEGAPDDALWVRTGDYGVY-FDGELYITGRVKDLVIIDGRNHYPQD  500 (631)
T ss_pred             ccccccCcccCCCeeeccccccE-ECCEEEEEcccccEEEECCeeeCHHH
Confidence                      2489999999999 59999999999999999999999976

>PRK13383 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=1.4e-34  Score=248.37  Aligned_cols=221  Identities=23%  Similarity=0.322  Sum_probs=191.1

Q ss_pred             eccCCCCcEEEEecChhhHHhHHHHHHHHhhcCcEEEEcCCCCHHHHHHHHHhcCceEEEeChHHHHHHHhcCCc--CCC
Q 026609            7 ETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLV--KKF   84 (236)
Q Consensus         7 ~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~--~~~   84 (236)
                      ..+..++|+++..+|++|.+|+ ..++.++..|+++++.+.+++..+++.++++++|.+.++|+++..+.+....  ...
T Consensus       211 ~~~~~~~d~~~~~~pl~h~~g~-~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~  289 (516)
T PRK13383        211 RTRLRTGSRISVAMPMFHGLGL-GMLMLTIALGGTVLTHRHFDAEAALAQASLHRADAFTAVPVVLARILELPPRVRARN  289 (516)
T ss_pred             hhccCCCCeEEEecCCcchhhH-HHHHHHHhcCCEEEECCCCCHHHHHHHHHHhCCcEEEecHHHHHHHHhccccccccC
Confidence            3567788999999999999999 5677889999999998889999999999999999999999999999875432  233


Q ss_pred             CCCCceEEeecCCCCCHHHHHHHHHhCCCCceeeccccccccccccccccCCCCCCCCCCccccCCCcEEEEEeCCCCCC
Q 026609           85 DLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKP  164 (236)
Q Consensus        85 ~l~~lr~i~~~G~~~~~~~~~~~~~~~~~~~v~~~~YG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~  164 (236)
                      .++++|.++++|+++++++.++|.+.++ ..+++ .||+||++..+..... ........+|+|+++++++++| +++++
T Consensus       290 ~~~~lr~i~~gG~~l~~~~~~~~~~~~g-~~v~~-~YG~tE~~~~~~~~~~-~~~~~~~~~G~~~~~~~~~i~d-~~~~~  365 (516)
T PRK13383        290 PLPQLRVVMSSGDRLDPTLGQRFMDTYG-DILYN-GYGSTEVGIGALATPA-DLRDAPETVGKPVAGCPVRILD-RNNRP  365 (516)
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHHcC-chhhh-cccccccccceecccc-ccccCCCcccCCCCCcEEEEEC-CCCCC
Confidence            5789999999999999999999999997 77888 9999999866554322 1234467899999999999999 57899


Q ss_pred             CCCCCceEEEEecCccchhhcCCcccccccccCCCeEecCceEEEcCCCcEEEEcccCCceeeccEEeecCC
Q 026609          165 LPPNQLGEIWLRGPNMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSNW  236 (236)
Q Consensus       165 ~~~g~~Gel~v~~~~~~~~~~~~~~~~~~~~~~~~~~~TgD~~~~~~~g~~~~~GR~~d~i~~~G~~i~p~~  236 (236)
                      ++.|+.|||+++++..+.+|++++...   + .+|||+|||+++++++|++++.||.||+||++|++|+|.|
T Consensus       366 ~~~g~~Gel~v~g~~~~~~Y~~~~~~~---~-~~g~~~TGDl~~~d~~G~l~i~GR~~~~i~~~G~~v~~~e  433 (516)
T PRK13383        366 VGPRVTGRIFVGGELAGTRYTDGGGKA---V-VDGMTSTGDMGYLDNAGRLFIVGREDDMIISGGENVYPRA  433 (516)
T ss_pred             CCCCCceEEEEecCcccccccCCchhh---e-ecCceecceeEEEcCCccEEEeccccceEEECCEEECHHH
Confidence            999999999999999999998775422   2 5799999999999999999999999999999999999864

>PRK08043 bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated

Probab=100.00  E-value=7.7e-35  Score=258.58  Aligned_cols=220  Identities=25%  Similarity=0.436  Sum_probs=185.3

Q ss_pred             eeccCCCCcEEEEecChhhHHhHHHHHHHHhhcCcEEEEcCC-CCHHHHHHHHHhcCceEEEeChHHHHHHHhcCCcCCC
Q 026609            6 QETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK-FDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKF   84 (236)
Q Consensus         6 ~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~   84 (236)
                      ..++..++|++++.+|++|.+|+...++.++..|+++++.+. ++...+++.++++++|.++++|+++..+.+..  ...
T Consensus       399 ~~~~~~~~d~~l~~~Pl~h~~g~~~~~~~~l~~G~~vv~~~~~~~~~~~~~~i~~~~vt~~~~~p~~~~~l~~~~--~~~  476 (718)
T PRK08043        399 TIADFTPNDRFMSALPLFHSFGLTVGLFTPLLTGAEVFLYPSPLHYRIVPELVYDRNCTVLFGTSTFLGNYARFA--NPY  476 (718)
T ss_pred             HhhCCCccCeEEEcCcchhhhhhHHHHHHHHHcCCEEEEeCCcccHHHHHHHHHhcCCeEEEchHHHHHHhhhhc--Ccc
Confidence            345678899999999999999997778999999999999874 56788899999999999999999998876642  334


Q ss_pred             CCCCceEEeecCCCCCHHHHHHHHHhCCCCceeeccccccccccccccccCCCCCCCCCCccccCCCcEEEEEeCCCCCC
Q 026609           85 DLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKP  164 (236)
Q Consensus        85 ~l~~lr~i~~~G~~~~~~~~~~~~~~~~~~~v~~~~YG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~  164 (236)
                      +++++|.++++|+++++++.+.|.+.++ ..+++ .||+||++.++......  ....+++|+|+|+++++++|+ ++. 
T Consensus       477 ~~~~lr~i~~gg~~l~~~~~~~~~~~~g-~~l~~-~YG~TE~~~~~~~~~~~--~~~~~svG~p~pg~~~~i~d~-~~~-  550 (718)
T PRK08043        477 DFARLRYVVAGAEKLQESTKQLWQDKFG-LRILE-GYGVTECAPVVSINVPM--AAKPGTVGRILPGMDARLLSV-PGI-  550 (718)
T ss_pred             cccceEEEEEeCccCCHHHHHHHHHHcC-CCeec-ccCcccccceEEecCCc--ccCCCCCCCcCCCCeeEEecC-CCC-
Confidence            6789999999999999999999999986 88888 99999998766543222  345678999999999999984 332 


Q ss_pred             CCCCCceEEEEecCccchhhcCC--ccc-------ccccccCCCeEecCceEEEcCCCcEEEEcccCCceeeccEEeecC
Q 026609          165 LPPNQLGEIWLRGPNMMRGYYNN--EQA-------TKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSN  235 (236)
Q Consensus       165 ~~~g~~Gel~v~~~~~~~~~~~~--~~~-------~~~~~~~~~~~~TgD~~~~~~~g~~~~~GR~~d~i~~~G~~i~p~  235 (236)
                         ++.|||+++|+.++.+|+++  ++.       +...+..+|||+|||++++|+||++++.||+||+||++|++|+|.
T Consensus       551 ---~~~Gel~v~g~~v~~GY~~~e~~~~~~~~~~~~~~~~~~~gw~~TGDlg~~d~dG~l~i~GR~~d~I~~~G~~V~p~  627 (718)
T PRK08043        551 ---EQGGRLQLKGPNIMNGYLRVEKPGVLEVPTAENARGEMERGWYDTGDIVRFDEQGFVQIQGRAKRFAKIAGEMVSLE  627 (718)
T ss_pred             ---CCceEEEEecCCccccccCCCCcccccccccccccccccCCeEecCCEEEEcCCCcEEEEecCCCeeEeCcEEcCHH
Confidence               45699999999999999983  332       222233578999999999999999999999999999999999997


Q ss_pred             C
Q 026609          236 W  236 (236)
Q Consensus       236 ~  236 (236)
                      |
T Consensus       628 e  628 (718)
T PRK08043        628 M  628 (718)
T ss_pred             H
Confidence            5

>PRK12316 peptide synthase; Provisional

Probab=100.00  E-value=4.6e-35  Score=296.77  Aligned_cols=228  Identities=21%  Similarity=0.274  Sum_probs=199.9

Q ss_pred             eeeeccCCCCcEEEEecChhhHHhHHHHHHHHhhcCcEEEEcC---CCCHHHHHHHHHhcCceEEEeChHHHHHHHhcCC
Q 026609            4 MDQETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA---KFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGL   80 (236)
Q Consensus         4 ~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~---~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~   80 (236)
                      +...++..++|++++.+|++|..++ ..++.++..|+++++.+   .+++..+++.++++++|++.++|++++.|++...
T Consensus       687 ~~~~~~~~~~d~~l~~~p~~fd~~~-~~~~~~L~~G~~l~i~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~  765 (5163)
T PRK12316        687 MQQAYGLGVGDTVLQKTPFSFDVSV-WEFFWPLMSGARLVVAAPGDHRDPAKLVELINREGVDTLHFVPSMLQAFLQDED  765 (5163)
T ss_pred             HHHhcCCCCCCEEEeeCCeehHHHH-HHHHHHHhCCCEEEECCccccCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhccc
Confidence            3456778899999999999999998 68899999999999985   3789999999999999999999999999987542


Q ss_pred             cCCCCCCCceEEeecCCCCCHHHHHHHHHhCCCCceeeccccccccccccccccCCCCCCCCCCccccCCCcEEEEEeCC
Q 026609           81 VKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVD  160 (236)
Q Consensus        81 ~~~~~l~~lr~i~~~G~~~~~~~~~~~~~~~~~~~v~~~~YG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~  160 (236)
                        ...++++|.+++|||++++++.+.|.+.+++..+++ .||+||++..+..............+|+|+++++++++| +
T Consensus       766 --~~~~~~l~~~~~gGe~l~~~~~~~~~~~~~~~~l~n-~YG~TE~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d-~  841 (5163)
T PRK12316        766 --VASCTSLRRIVCSGEALPADAQEQVFAKLPQAGLYN-LYGPTEAAIDVTHWTCVEEGGDSVPIGRPIANLACYILD-A  841 (5163)
T ss_pred             --cccCCCccEEEEeeccCCHHHHHHHHHhCCCCeEEe-CcCcChheeeeeEEecccccCCCCCCccccCCCEEEEEC-C
Confidence              336789999999999999999999998887788888 999999986554433322234456799999999999999 5


Q ss_pred             CCCCCCCCCceEEEEecCccchhhcCCccccccccc------CCCeEecCceEEEcCCCcEEEEcccCCceeeccEEeec
Q 026609          161 TQKPLPPNQLGEIWLRGPNMMRGYYNNEQATKLTID------KKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTS  234 (236)
Q Consensus       161 ~~~~~~~g~~Gel~v~~~~~~~~~~~~~~~~~~~~~------~~~~~~TgD~~~~~~~g~~~~~GR~~d~i~~~G~~i~p  234 (236)
                      +++++|.|+.|||+|+|+.++.||+++++.+...|.      .++||+|||++++++||.+++.||+||+||++|++|+|
T Consensus       842 ~~~~~p~G~~GEl~i~G~~v~~GYl~~~~~t~~~f~~~~~~~~~~~y~TGDl~~~~~dG~l~~~GR~d~~ik~~G~rI~~  921 (5163)
T PRK12316        842 NLEPVPVGVLGELYLAGRGLARGYHGRPGLTAERFVPSPFVAGERMYRTGDLARYRADGVIEYAGRIDHQVKLRGLRIEL  921 (5163)
T ss_pred             CCCCCCCCCceEEEecccccChhhCCChhhhhhhCCCCCCCCCCeeEecCccEEECCCCCEEeecccCCEEEEceEEcCh
Confidence            789999999999999999999999999999888773      24599999999999999999999999999999999999


Q ss_pred             CC
Q 026609          235 NW  236 (236)
Q Consensus       235 ~~  236 (236)
                      .|
T Consensus       922 ~E  923 (5163)
T PRK12316        922 GE  923 (5163)
T ss_pred             HH
Confidence            76

>PRK13390 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=1.1e-34  Score=248.17  Aligned_cols=224  Identities=24%  Similarity=0.353  Sum_probs=191.6

Q ss_pred             eccCCCCcEEEEecChhhHHhHHHHHHHHhhcCcEEEEcCCCCHHHHHHHHHhcCceEEEeChHHHHHHHhcCCc--CCC
Q 026609            7 ETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLV--KKF   84 (236)
Q Consensus         7 ~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~--~~~   84 (236)
                      .+....+|+++..+|++|.+++.. .+..+..|+++++.+.+++..+++.++++++|.+.++|+++..|++....  ...
T Consensus       189 ~~~~~~~~~~~~~~p~~h~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~  267 (501)
T PRK13390        189 FYDISESDIYYSSAPIYHAAPLRW-CSMVHALGGTVVLAKRFDAQATLGHVERYRITVTQMVPTMFVRLLKLDADVRTRY  267 (501)
T ss_pred             HhCCCCCCeEEecccchhhhHHHH-HHHHHhcCceEEEcCCcCHHHHHHHHHHcCCeEEEecHHHHHHHHhccchhcccC
Confidence            456788899999999999999843 34456789999998889999999999999999999999999998875432  334


Q ss_pred             CCCCceEEeecCCCCCHHHHHHHHHhCCCCceeeccccccccccccccccCCCCCCCCCCccccCCCcEEEEEeCCCCCC
Q 026609           85 DLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKP  164 (236)
Q Consensus        85 ~l~~lr~i~~~G~~~~~~~~~~~~~~~~~~~v~~~~YG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~  164 (236)
                      .++++|.++.+|+++++++.+.+.+.++ ..+++ .||+||++.++...... .....+.+|+|.++ .++++| +++++
T Consensus       268 ~~~~l~~v~~~g~~~~~~~~~~~~~~~~-~~~~~-~YG~tE~~~~~~~~~~~-~~~~~~~~G~~~~g-~~~i~d-~~~~~  342 (501)
T PRK13390        268 DVSSLRAVIHAAAPCPVDVKHAMIDWLG-PIVYE-YYSSTEAHGMTFIDSPD-WLAHPGSVGRSVLG-DLHICD-DDGNE  342 (501)
T ss_pred             ChhhhheEEEcCCCCCHHHHHHHHHhcC-Cceee-eecccccCceEEecchh-hccCCCCcCCcccc-eEEEEC-CCCCC
Confidence            5779999999999999999999999886 77888 99999998755432211 12345688999999 789998 67899


Q ss_pred             CCCCCceEEEEecCccchhhcCCcccccccccC--CCeEecCceEEEcCCCcEEEEcccCCceeeccEEeecCC
Q 026609          165 LPPNQLGEIWLRGPNMMRGYYNNEQATKLTIDK--KGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSNW  236 (236)
Q Consensus       165 ~~~g~~Gel~v~~~~~~~~~~~~~~~~~~~~~~--~~~~~TgD~~~~~~~g~~~~~GR~~d~i~~~G~~i~p~~  236 (236)
                      +++|+.|||+++++.++.+|+++++.+...+..  ++|++|||+++++++|.+++.||.||+||++|++|+|+|
T Consensus       343 ~~~g~~Gel~v~~~~~~~gy~~~~~~t~~~~~~~~~~w~~tGDl~~~~~dg~l~~~gR~~~~i~~~G~~v~p~e  416 (501)
T PRK13390        343 LPAGRIGTVYFERDRLPFRYLNDPEKTAAAQHPAHPFWTTVGDLGSVDEDGYLYLADRKSFMIISGGVNIYPQE  416 (501)
T ss_pred             CCCCCceEEEEecCCccccccCChhhhHHhhccCCCceEEcCceEEECCCCeEEEeeccccceeECCeeeCHHH
Confidence            999999999999999999999999988877643  579999999999999999999999999999999999975

>TIGR02262 benz_CoA_lig benzoate-CoA ligase family

Probab=100.00  E-value=1.4e-34  Score=247.96  Aligned_cols=225  Identities=22%  Similarity=0.323  Sum_probs=197.8

Q ss_pred             eeccCCCCcEEEEecChhhHHhHHHHHHHHhhcCcEEEEcC-CCCHHHHHHHHHhcCceEEEeChHHHHHHHhcCCcCCC
Q 026609            6 QETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKF   84 (236)
Q Consensus         6 ~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~   84 (236)
                      ..++.+++|+++..+|++|..++...++.++..|+++++.+ .+++..+++.++++++|.+.++|+++..++........
T Consensus       196 ~~~~~~~~d~~l~~~p~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~~~~~~~~~~~  275 (508)
T TIGR02262       196 NTLGIREDDVVFSAAKLFFAYGLGNALTFPMSVGATTVLMGERPTPDAVFDRLRRHQPTIFYGVPTLYAAMLADPNLPAE  275 (508)
T ss_pred             HhcCCCCCCEEEEcCchHHHHHHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHHCCcEEecchHHHHHHhcCcccccc
Confidence            34578889999999999999999777888999999999876 46899999999999999999999999888776544444


Q ss_pred             CCCCceEEeecCCCCCHHHHHHHHHhCCCCceeeccccccccccccccccCCCCCCCCCCccccCCCcEEEEEeCCCCCC
Q 026609           85 DLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKP  164 (236)
Q Consensus        85 ~l~~lr~i~~~G~~~~~~~~~~~~~~~~~~~v~~~~YG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~  164 (236)
                      ...++|.++++|+++++++.+.|.+.++ ..+++ .||+||++.++......  ....+.+|+|++++.++++| +++++
T Consensus       276 ~~~~l~~~~~~G~~l~~~~~~~~~~~~~-~~v~~-~YG~tE~~~~~~~~~~~--~~~~~~~G~~~~g~~v~i~d-~~~~~  350 (508)
T TIGR02262       276 DQVRLRLCTSAGEALPAEVGQRWQARFG-VDIVD-GIGSTEMLHIFLSNLPG--DVRYGTSGKPVPGYRLRLVG-DGGQD  350 (508)
T ss_pred             ccccceeEEEcCCCCCHHHHHHHHHHhC-Cchhh-CccccccCceeecCCcc--CCCCCCcCCCCCCcEEEEEC-CCCCC
Confidence            5678999999999999999999999987 78888 99999998765543222  33456789999999999999 78999


Q ss_pred             CCCCCceEEEEecCccchhhcCCcccccccccCCCeEecCceEEEcCCCcEEEEcccCCceeeccEEeecCC
Q 026609          165 LPPNQLGEIWLRGPNMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSNW  236 (236)
Q Consensus       165 ~~~g~~Gel~v~~~~~~~~~~~~~~~~~~~~~~~~~~~TgD~~~~~~~g~~~~~GR~~d~i~~~G~~i~p~~  236 (236)
                      +++|+.|||+++++..+.+|+++++.+...+ .++||+|||+++++++|.++++||.+|+|+++|.+|+|.|
T Consensus       351 ~~~g~~Gel~i~~~~~~~gY~~~~~~~~~~~-~~~~~~TGD~~~~~~~g~~~~~gR~~d~i~~~G~~v~~~~  421 (508)
T TIGR02262       351 VAAGEPGELLISGPSSATMYWNNRAKTRDTF-QGEWTRSGDKYVRNDDGSYTYAGRTDDMLKVSGIYVSPFE  421 (508)
T ss_pred             CCCCCeeEEEEecCccccccCCCHHHhHhhh-hcCceeccceEEEcCCccEEEeccccceeeeCCEEECHHH
Confidence            9999999999999999999999998888777 6789999999999999999999999999999999999864

Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases.

>PRK06164 acyl-CoA synthetase; Validated

Probab=100.00  E-value=9e-35  Score=250.78  Aligned_cols=227  Identities=28%  Similarity=0.439  Sum_probs=192.6

Q ss_pred             eeeccCCCCcEEEEecChhhHHhHHHHHHHHhhcCcEEEEcCCCCHHHHHHHHHhcCceEEEeChHHHHHHHhcCCcCCC
Q 026609            5 DQETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKF   84 (236)
Q Consensus         5 ~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~   84 (236)
                      +..++..++|++++.+|++|.+|+ ..++.++..|+++++.+.+++..+++.++++++|.++++|+++..|.+.. ....
T Consensus       214 ~~~~~~~~~~~~l~~~p~~~~~g~-~~~~~~l~~G~~~~~~~~~~~~~~~~~l~~~~~t~~~~~p~~l~~l~~~~-~~~~  291 (540)
T PRK06164        214 ARAYGYDPGAVLLAALPFCGVFGF-STLLGALAGGAPLVCEPVFDAARTARALRRHRVTHTFGNDEMLRRILDTA-GERA  291 (540)
T ss_pred             HHhcCCCCCCEEEEcCCchhHHHH-HHHHHHHhcCceEEecCCCCHHHHHHHHHHhCCeeecCCHHHHHHHHHhh-cccC
Confidence            344667889999999999999999 67899999999999999999999999999999999999999999998873 3455


Q ss_pred             CCCCceEEeecC-CCCCHHHHHHHHHhCCCCceeeccccccccccccccccCCC-CCCCCCCccccC-CCcEEEEEeCCC
Q 026609           85 DLSSLKLVGSGA-APLGKELMEECAKNVPSATVIQVGYGLTETSGIATMENSFA-GSRNIGSAGALA-PGVEALIVSVDT  161 (236)
Q Consensus        85 ~l~~lr~i~~~G-~~~~~~~~~~~~~~~~~~~v~~~~YG~tE~g~~~~~~~~~~-~~~~~~~~g~p~-~~~~~~~~~~~~  161 (236)
                      .++++|.+..+| .+...++.+++.+.  +..+++ .||+||++.++....... ........|.|. +++.++++|+++
T Consensus       292 ~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~YG~tE~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~  368 (540)
T PRK06164        292 DFPSARLFGFASFAPALGELAALARAR--GVPLTG-LYGSSEVQALVALQPATDPVSVRIEGGGRPASPEARVRARDPQD  368 (540)
T ss_pred             CCcceeeeeeccCCcchHHHHHHHhhc--CCceec-ceeeccccceeeccCCCCCCcceeccCccccCCCeEEEEecCCC
Confidence            788999887766 45556676666655  478888 999999987665433221 112223456665 789999999888


Q ss_pred             CCCCCCCCceEEEEecCccchhhcCCcccccccccCCCeEecCceEEEcCCCcEEEEcccCCceeeccEEeecCC
Q 026609          162 QKPLPPNQLGEIWLRGPNMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSNW  236 (236)
Q Consensus       162 ~~~~~~g~~Gel~v~~~~~~~~~~~~~~~~~~~~~~~~~~~TgD~~~~~~~g~~~~~GR~~d~i~~~G~~i~p~~  236 (236)
                      +++++.|+.|||+++|+.++.+|+++++.+...+..++||+|||+++++++|.+++.||.||+||++|++|+|.|
T Consensus       369 ~~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~~~~~TGDl~~~~~~g~l~~~GR~~~~i~~~G~~i~p~e  443 (540)
T PRK06164        369 GALLPDGESGEIEIRAPSLMRGYLDNPDATARALTDDGYFRTGDLGYTRGDGQFVYQTRMGDSLRLGGFLVNPAE  443 (540)
T ss_pred             CcCCCCCCeeEEEEecccccccccCCchhhhhcccCCCceecCCeEEEcCCceEEEEeecCCeEEECCEEcCHHH
Confidence            999999999999999999999999999999988888899999999999999999999999999999999999975

>PRK05851 long-chain-fatty-acid--[acyl-carrier-protein] ligase; Validated

Probab=100.00  E-value=3.2e-35  Score=252.79  Aligned_cols=223  Identities=27%  Similarity=0.372  Sum_probs=177.9

Q ss_pred             eeccCC-CCcEEEEecChhhHHhHHHHHHHHhhcCcEEEEcCC--C--CHHHHHHHHHhcCceEEEeChHHHHHHHhcCC
Q 026609            6 QETAGE-LDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK--F--DLEMFLRAIEKHRVTHIWVVPPLILALAKHGL   80 (236)
Q Consensus         6 ~~~~~~-~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~--~--~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~   80 (236)
                      +.++.. ++|++++.+|++|.+|+ ..++.+++.|+++++.+.  +  ++..+++.++++++|.+...|.++..+.+...
T Consensus       186 ~~~~~~~~~d~~l~~~pl~h~~g~-~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~p~~~~~~l~~~~~  264 (525)
T PRK05851        186 ARVGLDAATDVGCSWLPLYHDMGL-AFLLTAALAGAPLWLAPTTAFSASPFRWLSWLSDSRATLTAAPNFAYNLIGKYAR  264 (525)
T ss_pred             HHhCCCCCCCeEEEcCCCccCccH-HHHHHHHHcCCeEEEcCHHHHHHCHHHHHHHHHHhCCeEEeCCcHHHHHHHHhhc
Confidence            345666 88999999999999999 577899999999999763  4  57789999999999987554444444433221


Q ss_pred             -cCCCCCCCceEEeecCCCCCHHHHHHHHHh---CC--CCceeeccccccccccccccccCCC-------------CCCC
Q 026609           81 -VKKFDLSSLKLVGSGAAPLGKELMEECAKN---VP--SATVIQVGYGLTETSGIATMENSFA-------------GSRN  141 (236)
Q Consensus        81 -~~~~~l~~lr~i~~~G~~~~~~~~~~~~~~---~~--~~~v~~~~YG~tE~g~~~~~~~~~~-------------~~~~  141 (236)
                       .....++++|.++++|+++++++.++|.+.   ++  ...+.+ .||+||++..+.......             ....
T Consensus       265 ~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~g~~~~~~~~-~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  343 (525)
T PRK05851        265 RVSDVDLGALRVALNGGEPVDCDGFERFATAMAPFGFDAGAAAP-SYGLAESTCAVTVPVPGIGLRVDEVTTDDGSGARR  343 (525)
T ss_pred             cccCCCHHHhheeEeccccCCHHHHHHHHHHHhhcCCChhhccc-ccchhhhceEEEecCCCCCceeeeeccccCcccce
Confidence             234457899999999999999999998875   33  234777 999999976554321110             0123


Q ss_pred             CCCccccCCCcEEEEEeCCCCCCCCCCCceEEEEecCccchhhcCCcccccccccCCCeEecCceEEEcCCCcEEEEccc
Q 026609          142 IGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRI  221 (236)
Q Consensus       142 ~~~~g~p~~~~~~~~~~~~~~~~~~~g~~Gel~v~~~~~~~~~~~~~~~~~~~~~~~~~~~TgD~~~~~~~g~~~~~GR~  221 (236)
                      ...+|+|+++++++++|++++++++.|+.|||+++|+.++.||+++++..     .++||+|||+++++ +|.++++||+
T Consensus       344 ~~~vG~p~~g~~v~i~d~~~~~~~~~g~~GEl~v~g~~~~~GY~~~~~~~-----~~~~~~TGDl~~~~-~G~l~~~GR~  417 (525)
T PRK05851        344 HAVLGNPIPGMEVRISPGDGAAGVAGREIGEIEIRGASMMSGYLGQAPID-----PDDWFPTGDLGYLV-DGGLVVCGRA  417 (525)
T ss_pred             eeeecCCCCCcEEEEECCCCCccCCCCCeEEEEEecCchhhccccCCccC-----CCCceeccceEEEE-CCEEEEEeec
Confidence            45789999999999999766677999999999999999999999987532     47899999999986 7999999999


Q ss_pred             CCceeeccEEeecCC
Q 026609          222 KELIKYKGFQVTSNW  236 (236)
Q Consensus       222 ~d~i~~~G~~i~p~~  236 (236)
                      ||+||++|+||+|.|
T Consensus       418 dd~i~~~G~~v~p~e  432 (525)
T PRK05851        418 KELITVAGRNIFPTE  432 (525)
T ss_pred             CCEEEECCEEeCHHH
Confidence            999999999999975

>PRK10252 entF enterobactin synthase subunit F; Provisional

Probab=100.00  E-value=1.1e-34  Score=272.02  Aligned_cols=229  Identities=19%  Similarity=0.206  Sum_probs=197.5

Q ss_pred             eeeeccCCCCcEEEEecChhhHHhHHHHHHHHhhcCcEEEEcC---CCCHHHHHHHHHhcCceEEEeChHHHHHHHhcCC
Q 026609            4 MDQETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA---KFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGL   80 (236)
Q Consensus         4 ~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~---~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~   80 (236)
                      +...+++.++|++++.+|++|..++ ..++.++..|+++++.+   ..++..+++.++++++|.+.++|+++..+++...
T Consensus       630 ~~~~~~~~~~d~~l~~~~~~fd~~~-~~~~~~l~~G~~l~~~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~l~~l~~~~~  708 (1296)
T PRK10252        630 MQNHYPLTADDVVLQKTPCSFDVSV-WEFFWPFIAGAKLVMAEPEAHRDPLAMQQFFAEYGVTTTHFVPSMLAAFVASLT  708 (1296)
T ss_pred             HHHhcCCCCCCEEEEeCCcchhhhH-HHHHHHHhCCCEEEECChhccCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhhhc
Confidence            3456788899999999999999998 68899999999999976   3579999999999999999999999999887643


Q ss_pred             cCC--CCCCCceEEeecCCCCCHHHHHHHHHhCCCCceeeccccccccccccccccCCCC-----CCCCCCccccCCCcE
Q 026609           81 VKK--FDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVGYGLTETSGIATMENSFAG-----SRNIGSAGALAPGVE  153 (236)
Q Consensus        81 ~~~--~~l~~lr~i~~~G~~~~~~~~~~~~~~~~~~~v~~~~YG~tE~g~~~~~~~~~~~-----~~~~~~~g~p~~~~~  153 (236)
                      ...  ..++++|.+++|||++++++.+.|.+.++ ..+++ .||+||++..++.......     ......+|+|++++.
T Consensus       709 ~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~~-~~l~n-~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~  786 (1296)
T PRK10252        709 PEGARQSCASLRQVFCSGEALPADLCREWQQLTG-APLHN-LYGPTEAAVDVSWYPAFGEELAAVRGSSVPIGYPVWNTG  786 (1296)
T ss_pred             cccccccCCCccEEEEecCCCCHHHHHHHHhcCC-CEEEe-CCCcchhhheeeeeecccccccccCCCCCCcccccCCCE
Confidence            222  34678999999999999999999998875 78888 9999999876654332211     223457899999999


Q ss_pred             EEEEeCCCCCCCCCCCceEEEEecCccchhhcCCcccccccccC------CCeEecCceEEEcCCCcEEEEcccCCceee
Q 026609          154 ALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQATKLTIDK------KGWVHTGDLGYFDGDGQLYVVDRIKELIKY  227 (236)
Q Consensus       154 ~~~~~~~~~~~~~~g~~Gel~v~~~~~~~~~~~~~~~~~~~~~~------~~~~~TgD~~~~~~~g~~~~~GR~~d~i~~  227 (236)
                      +.++| +.+++++.|..|||+|+|+.++.||+++++.+...|..      ++||+|||+++++++|.++++||.||+||+
T Consensus       787 ~~i~d-~~~~~~~~g~~Gel~i~g~~~~~GY~~~~~~t~~~f~~~~~~~~~~~y~TGDl~~~~~~G~l~~~GR~d~~ik~  865 (1296)
T PRK10252        787 LRILD-ARMRPVPPGVAGDLYLTGIQLAQGYLGRPDLTASRFIADPFAPGERMYRTGDVARWLDDGAVEYLGRSDDQLKI  865 (1296)
T ss_pred             EEEEC-CCCCCCCCCCceEEEecccccchhhCCCcccchhhcccCCCCCCCEEEecCceEEEcCCCcEEEecccCCeEEE
Confidence            99999 68999999999999999999999999999988877743      349999999999999999999999999999


Q ss_pred             ccEEeecCC
Q 026609          228 KGFQVTSNW  236 (236)
Q Consensus       228 ~G~~i~p~~  236 (236)
                      +|++|+|.|
T Consensus       866 ~G~ri~~~e  874 (1296)
T PRK10252        866 RGQRIELGE  874 (1296)
T ss_pred             eeEEecHHH
Confidence            999999875

>PRK06155 crotonobetaine/carnitine-CoA ligase; Provisional

Probab=100.00  E-value=2.3e-34  Score=248.32  Aligned_cols=221  Identities=27%  Similarity=0.414  Sum_probs=194.8

Q ss_pred             eeccCCCCcEEEEecChhhHHhHHHHHHHHhhcCcEEEEcCCCCHHHHHHHHHhcCceEEEeChHHHHHHHhcCCcCCCC
Q 026609            6 QETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFD   85 (236)
Q Consensus         6 ~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~   85 (236)
                      ..+++++++++++.+|++|..++ ..++.+++.|+++++.+.+++..+++.++++++|.+.++|+++..|.+........
T Consensus       214 ~~~~~~~~~~~l~~~pl~~~~~~-~~~~~~l~~G~~~~~~~~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~~~  292 (542)
T PRK06155        214 EDLEIGADDVLYTTLPLFHTNAL-NAFFQALLAGATYVLEPRFSASGFWPAVRRHGATVTYLLGAMVSILLSQPARESDR  292 (542)
T ss_pred             HhcCCCCCCEEEEecCHHHHHHH-HHHHHHHHcCceEEeeCCCCHHHHHHHHHHhCCcEEEchHHHHHHHHcCcCccccc
Confidence            44667889999999999999999 56789999999999999999999999999999999999999999998876655566


Q ss_pred             CCCceEEeecCCCCCHHHHHHHHHhCCCCceeeccccccccccccccccCCCCCCCCCCccccCCCcEEEEEeCCCCCCC
Q 026609           86 LSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPL  165 (236)
Q Consensus        86 l~~lr~i~~~G~~~~~~~~~~~~~~~~~~~v~~~~YG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~  165 (236)
                      .+++|.++.+|  +++++.+.+.+.++ ..+++ .||+||++.++.....   ....+.+|.|.++++++++| ++++++
T Consensus       293 ~~~l~~~~~g~--~~~~~~~~~~~~~~-~~v~~-~YG~tE~~~~~~~~~~---~~~~~~vG~~~~~~~~~i~d-~~~~~~  364 (542)
T PRK06155        293 AHRVRVALGPG--VPAALHAAFRERFG-VDLLD-GYGSTETNFVIAVTHG---SQRPGSMGRLAPGFEARVVD-EHDQEL  364 (542)
T ss_pred             cCceEEEEEcC--CCHHHHHHHHHHcC-CCEEe-eecccccCccccCCCC---CCCCCCcCccCCCceEEEEC-CCCCCC
Confidence            77899887665  57889999999987 78888 9999999887664321   34567899999999999999 568999


Q ss_pred             CCCCceEEEEecC---ccchhhcCCcccccccccCCCeEecCceEEEcCCCcEEEEcccCCceeeccEEeecCC
Q 026609          166 PPNQLGEIWLRGP---NMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSNW  236 (236)
Q Consensus       166 ~~g~~Gel~v~~~---~~~~~~~~~~~~~~~~~~~~~~~~TgD~~~~~~~g~~~~~GR~~d~i~~~G~~i~p~~  236 (236)
                      +.|+.|||+++++   .++.||+++++.+...+ .++||+|||+++++++|++++.||.+|+|+++|.+|+|+|
T Consensus       365 ~~g~~Gei~v~~~~~~~~~~GY~~~~~~~~~~~-~~~~~~TGD~~~~~~dG~l~i~GR~~d~i~~~G~~v~p~e  437 (542)
T PRK06155        365 PDGEPGELLLRADEPFAFATGYFGMPEKTVEAW-RNLWFHTGDRVVRDADGWFRFVDRIKDAIRRRGENISSFE  437 (542)
T ss_pred             CCCCceEEEEecCCccccchhhcCCHHHHHHhh-cCCcEeccceEEEcCCceEEEEecCCCEEEeCCEEECHHH
Confidence            9999999999998   68999999998887776 6899999999999999999999999999999999999975

>PRK05857 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.3e-34  Score=249.75  Aligned_cols=223  Identities=26%  Similarity=0.384  Sum_probs=186.8

Q ss_pred             ccCCCCcEEEEecChhhHHhHHHHHHHHhhcCcEEEEcCCCCHHHHHHHHHhcCceEEEeChHHHHHHHhcCCcCCCCCC
Q 026609            8 TAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLS   87 (236)
Q Consensus         8 ~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~   87 (236)
                      ++...+++.++.+|++|..++ ...+.+++.|+++++ ++.++..+++.++++++|.++++|+++..|.+.......+++
T Consensus       209 ~~~~~~~~~~~~~p~~h~~~l-~~~~~~l~~G~~~v~-~~~~~~~~~~~i~~~~it~~~~~P~~~~~l~~~~~~~~~~~~  286 (540)
T PRK05857        209 VTWVVGETTYSPLPATHIGGL-WWILTCLMHGGLCVT-GGENTTSLLEILTTNAVATTCLVPTLLSKLVSELKSANATVP  286 (540)
T ss_pred             cccccCceeeecCCccccchH-HHHHHHhhcceeEEe-cCCChhHHHHHHHhcCcceEEeChHHHHHHHhccccCCCcCc
Confidence            345567899999999999999 467788999998876 446788999999999999999999999999887765666889


Q ss_pred             CceEEeecCCCCCHHHHHHHHHhCCCCceeeccccccccccccccccCCCC---CCCCCCccccCCCcEEEEEeCCCCCC
Q 026609           88 SLKLVGSGAAPLGKELMEECAKNVPSATVIQVGYGLTETSGIATMENSFAG---SRNIGSAGALAPGVEALIVSVDTQKP  164 (236)
Q Consensus        88 ~lr~i~~~G~~~~~~~~~~~~~~~~~~~v~~~~YG~tE~g~~~~~~~~~~~---~~~~~~~g~p~~~~~~~~~~~~~~~~  164 (236)
                      ++|.++++|++++....+ +.+.++ .++.+ .||+||++...........   ..+.+.+|+|+++++++++|+++..+
T Consensus       287 ~lr~~~~gG~~~~~~~~~-~~~~~g-~~i~~-~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~g~~v~i~d~~~~~~  363 (540)
T PRK05857        287 SLRLVGYGGSRAIAADVR-FIEATG-VRTAQ-VYGLSETGCTALCLPTDDGSIVKIEAGAVGRPYPGVDVYLAATDGIGP  363 (540)
T ss_pred             cceEEEEcCccCCchhHH-HHHHhC-Ceeec-ccCCCcCCceeeecccccccccccccCCcCcccCCcEEEEECccccCc
Confidence            999999999999888775 555665 88888 9999999865443222111   12456899999999999999654433


Q ss_pred             C-----CCCCceEEEEecCccchhhcCCcccccccccCCCeEecCceEEEcCCCcEEEEcccCCceeeccEEeecCC
Q 026609          165 L-----PPNQLGEIWLRGPNMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSNW  236 (236)
Q Consensus       165 ~-----~~g~~Gel~v~~~~~~~~~~~~~~~~~~~~~~~~~~~TgD~~~~~~~g~~~~~GR~~d~i~~~G~~i~p~~  236 (236)
                      +     +.|+.|||+++++.++.||+++++.+...+ .+|||+|||+++++++|++++.||.||+||++|++|+|.|
T Consensus       364 ~~~~~~~~~~~Gel~v~g~~~~~GY~~~~~~t~~~~-~~g~~~TGDlg~~d~~g~l~~~GR~~~~ik~~G~~v~p~e  439 (540)
T PRK05857        364 TAPGAGPSASFGTLWIKSPANMLGYWNNPERTAEVL-IDGWVNTGDLLERREDGFFYIKGRSSEMIICGGVNIAPDE  439 (540)
T ss_pred             cccccCCCCCcceEEEeCcchhhhhhCCccchhhhc-CCCceeccceEEEcCCceEEEeccccccEecCCEEECHHH
Confidence            3     457899999999999999999999888877 6889999999999999999999999999999999999975

>PRK12406 long-chain-fatty-acid--CoA ligase; Provisional

Probab=100.00  E-value=3.6e-34  Score=245.43  Aligned_cols=225  Identities=28%  Similarity=0.424  Sum_probs=193.7

Q ss_pred             eeccCCCCcEEEEecChhhHHhHHHHHHHHhhcCcEEEEcCCCCHHHHHHHHHhcCceEEEeChHHHHHHHhcCC--cCC
Q 026609            6 QETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGL--VKK   83 (236)
Q Consensus         6 ~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~--~~~   83 (236)
                      ..++..++|+++..+|++|..+.. ..+.++..|+++++.+.+++..+++.++++++|.+.++|+++..|++..+  ...
T Consensus       189 ~~~~~~~~~~~l~~~p~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~  267 (509)
T PRK12406        189 LIYGLKPGIRALLTGPLYHSAPNA-YGLRAGRLGGVLVLQPRFDPEELLQLIERHRITHMHMVPTMFIRLLKLPEEVRAK  267 (509)
T ss_pred             hhcCCCCCceEEEEeCCcccchHH-HHHHHHhhheEEEEccCCCHHHHHHHHHHcCCeEEEccHHHHHHHHhCchhhccc
Confidence            456678899999999999998874 44567888999999888899999999999999999999999999987543  233


Q ss_pred             CCCCCceEEeecCCCCCHHHHHHHHHhCCCCceeeccccccccccccccccCCCCCCCCCCccccCCCcEEEEEeCCCCC
Q 026609           84 FDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQK  163 (236)
Q Consensus        84 ~~l~~lr~i~~~G~~~~~~~~~~~~~~~~~~~v~~~~YG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~  163 (236)
                      .+++++|.++.+|+++++++.+++.+.++ ..+++ .||+||++.++.... .+....++.+|.|.++++++++| ++++
T Consensus       268 ~~~~~l~~v~~gg~~~~~~~~~~~~~~~~-~~~~~-~YG~tE~~~~~~~~~-~~~~~~~~~~G~~~~~~~~~i~d-~~~~  343 (509)
T PRK12406        268 YDVSSLRHVIHAAAPCPADVKRAMIEWWG-PVIYE-YYGSTESGAVTFATS-EDALSHPGTVGKAAPGAELRFVD-EDGR  343 (509)
T ss_pred             CCCCceeEEEEcCCCCCHHHHHHHHHHcC-CcEEe-eccccccCceEecCc-ccccccCCCcCccCCCcEEEEEC-CCCC
Confidence            46789999999999999999999999887 77888 999999998765432 22234457899999999999999 5789


Q ss_pred             CCCCCCceEEEEecCccch-hhcCCcccccccccCCCeEecCceEEEcCCCcEEEEcccCCceeeccEEeecCC
Q 026609          164 PLPPNQLGEIWLRGPNMMR-GYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSNW  236 (236)
Q Consensus       164 ~~~~g~~Gel~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~TgD~~~~~~~g~~~~~GR~~d~i~~~G~~i~p~~  236 (236)
                      +++.|+.|||+++++.++. +|+++++.+...+ .++||+|||+++++++|++++.||.||+||++|++|+|.|
T Consensus       344 ~~~~g~~Gel~v~~~~~~~~~y~~~~~~~~~~~-~~~~~~TGD~~~~~~~g~~~~~GR~~d~ik~~G~~v~~~~  416 (509)
T PRK12406        344 PLPQGEIGEIYSRIAGNPDFTYHNKPEKRAEID-RGGFITSGDVGYLDADGYLFLCDRKRDMVISGGVNIYPAE  416 (509)
T ss_pred             CCCCCCceEEEEECCccccccccCCchhccccc-CCCCeEEccEEEEcCCceEEEeecccceEEECCEEECHHH
Confidence            9999999999999998765 8888888776655 7899999999999999999999999999999999999864

>PRK07470 acyl-CoA synthetase; Validated

Probab=100.00  E-value=2.1e-34  Score=247.89  Aligned_cols=222  Identities=32%  Similarity=0.542  Sum_probs=190.7

Q ss_pred             cCCCCcEEEEecChhhHHhHHHHHHHHhhcCcEEEEcC--CCCHHHHHHHHHhcCceEEEeChHHHHHHHhcCCcCCCCC
Q 026609            9 AGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA--KFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDL   86 (236)
Q Consensus         9 ~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~--~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l   86 (236)
                      +..++|+++..+|++|..++ ..++ .++.|++.++.+  .+++..+++.++++++|.+.++|++++.+.+........+
T Consensus       202 ~~~~~d~~l~~~p~~~~~~~-~~~~-~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~  279 (528)
T PRK07470        202 GTTEQDASLVVAPLSHGAGI-HQLC-QVARGAATVLLPSERFDPAEVWALVERHRVTNLFTVPTILKMLVEHPAVDRYDH  279 (528)
T ss_pred             CCCcccEEEEeccchhHHHH-HHHH-HHhcCceEEEecccCcCHHHHHHHHHhcCCeEEechHHHHHHHHhCcCcCCCCC
Confidence            45678999999999999998 4444 566777776664  5789999999999999999999999999988776666678


Q ss_pred             CCceEEeecCCCCCHHHHHHHHHhCCCCceeeccccccccccccccccCC------CCCCCCCCccccCCCcEEEEEeCC
Q 026609           87 SSLKLVGSGAAPLGKELMEECAKNVPSATVIQVGYGLTETSGIATMENSF------AGSRNIGSAGALAPGVEALIVSVD  160 (236)
Q Consensus        87 ~~lr~i~~~G~~~~~~~~~~~~~~~~~~~v~~~~YG~tE~g~~~~~~~~~------~~~~~~~~~g~p~~~~~~~~~~~~  160 (236)
                      +++|.++++|++++++..+++.+.++ ..+++ .||+||++..+......      ......+.+|.|.++++++++| +
T Consensus       280 ~~lr~~~~gG~~l~~~~~~~~~~~~g-~~~~~-~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~g~~~~i~d-~  356 (528)
T PRK07470        280 SSLRYVIYAGAPMYRADQKRALAKLG-KVLVQ-YFGLGEVTGNITVLPPALHDAEDGPDARIGTCGFERTGMEVQIQD-D  356 (528)
T ss_pred             cceEEEEEcCCCCCHHHHHHHHHHhC-cHHHH-hCCCcccCCceeecchhhccccccccceeeccCcccCCcEEEEEC-C
Confidence            89999999999999999999999887 77888 99999988765432211      0123456789999999999999 5


Q ss_pred             CCCCCCCCCceEEEEecCccchhhcCCcccccccccCCCeEecCceEEEcCCCcEEEEcccCCceeeccEEeecCC
Q 026609          161 TQKPLPPNQLGEIWLRGPNMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSNW  236 (236)
Q Consensus       161 ~~~~~~~g~~Gel~v~~~~~~~~~~~~~~~~~~~~~~~~~~~TgD~~~~~~~g~~~~~GR~~d~i~~~G~~i~p~~  236 (236)
                      ++++++.|+.|||+++++.++.+|+++++.+...+ .++||+|||+++++++|++++.||.||++|++|++|+|.|
T Consensus       357 ~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~-~~~~~~TGDl~~~~~~g~l~~~GR~dd~i~~~G~~v~~~~  431 (528)
T PRK07470        357 EGRELPPGETGEICVIGPAVFAGYYNNPEANAKAF-RDGWFRTGDLGHLDARGFLYITGRASDMYISGGSNVYPRE  431 (528)
T ss_pred             CCCCCCCCCceEEEEeCCccchhhcCCHHHHHhhh-cCCcEecceeEEEccCCeEEEeCCccceEEeCCEEECHHH
Confidence            78899999999999999999999999998887776 6899999999999999999999999999999999999864

>TIGR03098 ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosortase system type 1 associated

Probab=100.00  E-value=3.6e-34  Score=245.55  Aligned_cols=225  Identities=26%  Similarity=0.359  Sum_probs=195.2

Q ss_pred             eccCCCCcEEEEecChhhHHhHHHHHHHHhhcCcEEEEcCCCCHHHHHHHHHhcCceEEEeChHHHHHHHhcCCcCCCCC
Q 026609            7 ETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDL   86 (236)
Q Consensus         7 ~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l   86 (236)
                      .+.+.++|++++.+|++|.+|+ ..++.++..|+++++.+.+++..+++.++++++|++.++|+++..|.+... ....+
T Consensus       196 ~~~~~~~d~~l~~~p~~~~~~~-~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~-~~~~~  273 (515)
T TIGR03098       196 YLENRPDDRLLAVLPLSFDYGF-NQLTTAFYVGATVVLHDYLLPRDVLKALEKHGITGLAAVPPLWAQLAQLDW-PESAA  273 (515)
T ss_pred             HhCCCcccEEEEECchhhHhHH-HHHHHHHHcCCEEEEcCCCCHHHHHHHHHHcCCceEecChHHHHHHHhccc-CCCCc
Confidence            4567788999999999999999 578899999999999988999999999999999999999999999987532 22466


Q ss_pred             CCceEEeecCCCCCHHHHHHHHHhCCCCceeeccccccccccccccccCCCCCCCCCCccccCCCcEEEEEeCCCCCCCC
Q 026609           87 SSLKLVGSGAAPLGKELMEECAKNVPSATVIQVGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLP  166 (236)
Q Consensus        87 ~~lr~i~~~G~~~~~~~~~~~~~~~~~~~v~~~~YG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~  166 (236)
                      +++|.++++|+++++++.+.+.+.+++..+++ .||+||++....... ......++.+|+|++++++++++ +++++++
T Consensus       274 ~~l~~~~~~g~~l~~~~~~~~~~~~~~~~~~~-~YG~tE~~~~~~~~~-~~~~~~~~~vG~~~~~~~~~i~~-~~~~~~~  350 (515)
T TIGR03098       274 PSLRYLTNSGGAMPRATLSRLRSFLPNARLFL-MYGLTEAFRSTYLPP-EEVDRRPDSIGKAIPNAEVLVLR-EDGSECA  350 (515)
T ss_pred             cceEEEEecCCcCCHHHHHHHHHHCCCCeEee-eeccccccceEeccc-ccccCCCCCcceecCCCEEEEEC-CCCCCCC
Confidence            79999999999999999999999997678888 999999976554322 22234567899999999999999 5788999


Q ss_pred             CCCceEEEEecCccchhhcCCcccccccccC-----------CCeEecCceEEEcCCCcEEEEcccCCceeeccEEeecC
Q 026609          167 PNQLGEIWLRGPNMMRGYYNNEQATKLTIDK-----------KGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSN  235 (236)
Q Consensus       167 ~g~~Gel~v~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~TgD~~~~~~~g~~~~~GR~~d~i~~~G~~i~p~  235 (236)
                      .|+.|||+++++.++.+|++++..+...+..           ++||+|||+++++++|++++.||.+|+|+++|++|+|+
T Consensus       351 ~~~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~  430 (515)
T TIGR03098       351 PGEEGELVHRGALVAMGYWNDPEKTAERFRPLPPRPGELHLPELAVWSGDTVRRDEEGFLYFVGRRDEMIKTSGYRVSPT  430 (515)
T ss_pred             CCCceEEEEcCchhhccccCCchhhhhhhhccCCccccccccccceeccceEEEcCCceEEEEeccccceecCCEEeCHH
Confidence            9999999999999999999988776655422           34899999999999999999999999999999999997


Q ss_pred             C
Q 026609          236 W  236 (236)
Q Consensus       236 ~  236 (236)
                      |
T Consensus       431 e  431 (515)
T TIGR03098       431 E  431 (515)
T ss_pred             H
Confidence            5

This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present.

>TIGR03205 pimA dicarboxylate--CoA ligase PimA

Probab=100.00  E-value=4.9e-34  Score=246.31  Aligned_cols=221  Identities=38%  Similarity=0.623  Sum_probs=193.9

Q ss_pred             CCcEEEEecChhhHHhHHHHHHHHhhcCcEEEEcCCCCHHHHHHHHHhcCceEEEeChHHHHHHHhcCCcCCCCCCCceE
Q 026609           12 LDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSSLKL   91 (236)
Q Consensus        12 ~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~   91 (236)
                      ..+++++.+|++|.+++...++.++..|+++++.+.+++..+++.++++++|.+.++|+++..|++........++++|.
T Consensus       237 ~~~~~l~~~p~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~  316 (541)
T TIGR03205       237 DVERVICVLPLFHIYALTVILLRSLRRGDLISLHQRFDVAAVFRDIEEKRATVFPGVPTMWIALANDPSLEKRDLSSLAT  316 (541)
T ss_pred             CCceEEEeccHHHHHHHHHHHHHHHhcCCEEEecCCCCHHHHHHHHHHcCCeEeechHHHHHHHHhCccccccCccccce
Confidence            34799999999999999788889999999999988889999999999999999999999999998765444556789999


Q ss_pred             EeecCCCCCHHHHHHHHHhCCCCceeeccccccccccccccccCCCCCCCCCCccccCCCcEEEEEe-CCCCCCCCCCCc
Q 026609           92 VGSGAAPLGKELMEECAKNVPSATVIQVGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVS-VDTQKPLPPNQL  170 (236)
Q Consensus        92 i~~~G~~~~~~~~~~~~~~~~~~~v~~~~YG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~-~~~~~~~~~g~~  170 (236)
                      ++++|+++++++.+++.+.++ ..+++ .||+||++.++...... .....+.+|.|++++.+++.+ ++.+++++.|+.
T Consensus       317 i~~gg~~~~~~~~~~~~~~~~-~~~~~-~YG~TE~~~~~~~~~~~-~~~~~~~~G~~~~~~~~~v~~~d~~~~~~~~g~~  393 (541)
T TIGR03205       317 IGSGGAPLPVEVANFFERKTG-LKLKS-GWGMTETCSPGTGHPPE-GPDKPGSIGLMLPGIELDVVSLDDPTKVLPPGEV  393 (541)
T ss_pred             EEEccccCCHHHHHHHHHHhC-CCeec-ccccccCCcccccCCCC-CCCCCCCcceeccCceeEEEecCCCCccCCCCCe
Confidence            999999999999999998886 88888 99999998776654322 123456789999999998865 356789999999


Q ss_pred             eEEEEecCccchhhcCCcccccccccCCCeEecCceEEEcCCCcEEEEcccCCceeeccEEeecCC
Q 026609          171 GEIWLRGPNMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSNW  236 (236)
Q Consensus       171 Gel~v~~~~~~~~~~~~~~~~~~~~~~~~~~~TgD~~~~~~~g~~~~~GR~~d~i~~~G~~i~p~~  236 (236)
                      |||+++++.++.+|+++++.+...+ .++||+|||+++++++|++++.||.||+||++|++|+|.|
T Consensus       394 Gel~v~~~~~~~gy~~~~~~~~~~~-~~~~~~TGD~~~~~~~g~l~i~GR~~~~i~~~G~~i~~~e  458 (541)
T TIGR03205       394 GELRIRGPNVTRGYWNRPEESAEAF-VGDRFLTGDIGYMDTDGYFFLVDRKKDMIISGGFNVYPQM  458 (541)
T ss_pred             eEEEEecCCccccccCChhhhHhhh-ccCCcccCceEEEcCCceEEEEccccCeEEECCEEECHHH
Confidence            9999999999999999998888777 5789999999999999999999999999999999999875

PimA, a member of a large family of acyl-CoA ligases, is found in a characteristic operon pimFABCDE for the metabolism of pimelate and related compounds. It is found, so far, in Bradyrhizobium japonicum and several strains of Rhodopseudomonas palustris. PimA from R. palustris was shown to be active as a CoA ligase for C(7) to C(14) dicarboxylates and fatty acids.

>PTZ00216 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=1.1e-34  Score=256.76  Aligned_cols=217  Identities=28%  Similarity=0.423  Sum_probs=175.9

Q ss_pred             CCCcEEEEecChhhHHhHHHHHHHHhhcCcEEEEcCCCCHHHHHH-------HHHhcCceEEEeChHHHHHHHhcCCc--
Q 026609           11 ELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLR-------AIEKHRVTHIWVVPPLILALAKHGLV--   81 (236)
Q Consensus        11 ~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~-------~i~~~~~t~~~~~P~~~~~l~~~~~~--   81 (236)
                      .++|++++.+|++|.++.. .....+..|+++++.   ++..+.+       .++++++|.+.++|.+++.+.+....  
T Consensus       308 ~~~d~~ls~lPl~H~~~~~-~~~~~l~~G~~v~~~---~~~~l~~~~~~~~~~l~~~~pT~~~~vP~~~~~l~~~~~~~~  383 (700)
T PTZ00216        308 EEDETYCSYLPLAHIMEFG-VTNIFLARGALIGFG---SPRTLTDTFARPHGDLTEFRPVFLIGVPRIFDTIKKAVEAKL  383 (700)
T ss_pred             CCCCEEEEEChHHHHHHHH-HHHHHHHcCCEEEEC---CHHHhhhhhccccchHHHcCCcEEEechHHHHHHHHHHHHHH
Confidence            6789999999999999984 445567888887774   3444444       68899999999999999887643110  


Q ss_pred             -----------------------CCC----------------CCCCceEEeecCCCCCHHHHHHHHHhCCCCceeecccc
Q 026609           82 -----------------------KKF----------------DLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVGYG  122 (236)
Q Consensus        82 -----------------------~~~----------------~l~~lr~i~~~G~~~~~~~~~~~~~~~~~~~v~~~~YG  122 (236)
                                             ...                ..+++|.+++||+++++++.++++..++  .+++ .||
T Consensus       384 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~~lr~i~~GGa~l~~~~~~~~~~~~~--~l~~-~YG  460 (700)
T PTZ00216        384 PPVGSLKRRVFDHAYQSRLRALKEGKDTPYWNEKVFSAPRAVLGGRVRAMLSGGGPLSAATQEFVNVVFG--MVIQ-GWG  460 (700)
T ss_pred             hccCHHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHhCCcEEEEEECCCCCCHHHHHHHHHHhh--hHhh-ccC
Confidence                                   000                0157999999999999999887777664  7888 999


Q ss_pred             ccccccccccccCCCCCCCCCCccccCCCcEEEEEeCCCC-CCCCCCCceEEEEecCccchhhcCCcccccccccCCCeE
Q 026609          123 LTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQ-KPLPPNQLGEIWLRGPNMMRGYYNNEQATKLTIDKKGWV  201 (236)
Q Consensus       123 ~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~-~~~~~g~~Gel~v~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (236)
                      +||++..+......  ....+++|+|+++++++++|.++. ...+++..|||+|+|+.++.||+++++.+...|..+|||
T Consensus       461 ~TEt~~~~~~~~~~--~~~~~svG~p~~g~evkI~d~~~~~~~~~~~~~GEL~vrG~~v~~GY~~~pe~T~~~f~~dGw~  538 (700)
T PTZ00216        461 LTETVCCGGIQRTG--DLEPNAVGQLLKGVEMKLLDTEEYKHTDTPEPRGEILLRGPFLFKGYYKQEELTREVLDEDGWF  538 (700)
T ss_pred             cccccccccccCCC--CCCCCCcCCcCCCeEEEEeechhhccCCCCCCCceEEEcCCcccchhcCChhHhhhhccccCCe
Confidence            99998765543322  345678999999999999995432 334566789999999999999999999999999889999


Q ss_pred             ecCceEEEcCCCcEEEEcccCCcee-eccEEeecCC
Q 026609          202 HTGDLGYFDGDGQLYVVDRIKELIK-YKGFQVTSNW  236 (236)
Q Consensus       202 ~TgD~~~~~~~g~~~~~GR~~d~i~-~~G~~i~p~~  236 (236)
                      +|||+|++++||+++++||+||+|| .+|++|+|+|
T Consensus       539 ~TGDig~~d~dG~l~i~GR~kd~ik~~~G~~I~p~e  574 (700)
T PTZ00216        539 HTGDVGSIAANGTLRIIGRVKALAKNCLGEYIALEA  574 (700)
T ss_pred             eccceEEEcCCCcEEEEEehHhheecCCCceeccHH
Confidence            9999999999999999999999998 7999999975

>PLN02387 long-chain-fatty-acid-CoA ligase family protein

Probab=100.00  E-value=1.3e-34  Score=255.91  Aligned_cols=223  Identities=28%  Similarity=0.373  Sum_probs=177.7

Q ss_pred             cCCCCcEEEEecChhhHHhHHHHHHHHhhcCcEEEEcCCCC--------HHHHHHHHHhcCceEEEeChHHHHHHHhcCC
Q 026609            9 AGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFD--------LEMFLRAIEKHRVTHIWVVPPLILALAKHGL   80 (236)
Q Consensus         9 ~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~--------~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~   80 (236)
                      +..++|++++++|++|.+++. ....++..|+++.+.....        ...+++.++++++|.+.++|+++..+.+...
T Consensus       288 ~~~~~d~~l~~lPl~Hi~~~~-~~~~~~~~g~~i~~g~~~~l~~~~~~~~~~~~~~i~~~~pT~~~~vP~~l~~l~~~~~  366 (696)
T PLN02387        288 KLGKNDVYLAYLPLAHILELA-AESVMAAVGAAIGYGSPLTLTDTSNKIKKGTKGDASALKPTLMTAVPAILDRVRDGVR  366 (696)
T ss_pred             CCCCCCEEEEECcHHHHHHHH-HHHHHHHhCCEEEECChhhhcccccccccCchhhHHHhCCcEEEehhHHHHHHHHHHH
Confidence            567889999999999999994 4445677888877654321        2345678999999999999999998865321


Q ss_pred             cCC----------------------------------------------CCC-CCceEEeecCCCCCHHHHHHHHHhCCC
Q 026609           81 VKK----------------------------------------------FDL-SSLKLVGSGAAPLGKELMEECAKNVPS  113 (236)
Q Consensus        81 ~~~----------------------------------------------~~l-~~lr~i~~~G~~~~~~~~~~~~~~~~~  113 (236)
                      ...                                              ..+ +++|.+++||+++++++.+.+...++ 
T Consensus       367 ~~~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~lr~i~~GGapl~~~~~~~~~~~~g-  445 (696)
T PLN02387        367 KKVDAKGGLAKKLFDIAYKRRLAAIEGSWFGAWGLEKLLWDALVFKKIRAVLGGRIRFMLSGGAPLSGDTQRFINICLG-  445 (696)
T ss_pred             HHHhcccHHHHHHHHHHHHHHHHHhccCCcccccccchhhHHHHHHHHHHHhCCcEEEEEEcCCCCCHHHHHHHHHHcC-
Confidence            000                                              001 58999999999999999888887786 


Q ss_pred             CceeeccccccccccccccccCCCCCCCCCCccccCCCcEEEEEeC-CCCCCC--CCCCceEEEEecCccchhhcCCccc
Q 026609          114 ATVIQVGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSV-DTQKPL--PPNQLGEIWLRGPNMMRGYYNNEQA  190 (236)
Q Consensus       114 ~~v~~~~YG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~-~~~~~~--~~g~~Gel~v~~~~~~~~~~~~~~~  190 (236)
                      ..+++ .||+||++..++.....  ....+.+|.|+|+++++++|. +.+..+  .++..|||+++|+.++.||+++++.
T Consensus       446 ~~v~~-~YG~TEt~~~~~~~~~~--~~~~gsvG~p~p~~evkivd~~~~~~~~~~~~~p~GEi~vrGp~v~~GY~~~pe~  522 (696)
T PLN02387        446 APIGQ-GYGLTETCAGATFSEWD--DTSVGRVGPPLPCCYVKLVSWEEGGYLISDKPMPRGEIVIGGPSVTLGYFKNQEK  522 (696)
T ss_pred             CCeeE-eechhhcccceeecCcc--cCCCCccCCCCCceEEEEeeccccCcccCCCCCCCceEEeccCcccchhcCCHHH
Confidence            88999 99999998766544332  345678999999999999984 333333  2445799999999999999999999


Q ss_pred             ccccc--cCCC--eEecCceEEEcCCCcEEEEcccCCceee-ccEEeecCC
Q 026609          191 TKLTI--DKKG--WVHTGDLGYFDGDGQLYVVDRIKELIKY-KGFQVTSNW  236 (236)
Q Consensus       191 ~~~~~--~~~~--~~~TgD~~~~~~~g~~~~~GR~~d~i~~-~G~~i~p~~  236 (236)
                      +...|  +.+|  ||+|||+|++|+||+++++||++|+||+ +|++|+|+|
T Consensus       523 T~~~f~~d~~G~~W~~TGDig~~d~dG~l~i~gR~kd~ik~~~Ge~I~p~e  573 (696)
T PLN02387        523 TDEVYKVDERGMRWFYTGDIGQFHPDGCLEIIDRKKDIVKLQHGEYVSLGK  573 (696)
T ss_pred             HhhhhccccCCCceeecCceEEECCCCcEEEEEcccceEECCCCeEEchHH
Confidence            99887  3345  9999999999999999999999999998 699999975

>PRK07059 Long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=5.1e-34  Score=246.97  Aligned_cols=220  Identities=32%  Similarity=0.512  Sum_probs=193.9

Q ss_pred             CcEEEEecChhhHHhHHHHHHHHhhcCcEEEEcC-CCCHHHHHHHHHhcCceEEEeChHHHHHHHhcCCcCCCCCCCceE
Q 026609           13 DYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSSLKL   91 (236)
Q Consensus        13 ~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~   91 (236)
                      ++++++.+|++|.+++....+.++..|++.++.+ ..++..+++.++++++|.+.++|+++..+.+.......+++++|.
T Consensus       252 ~~~~~~~~pl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~~l~~  331 (557)
T PRK07059        252 QLNFVCALPLYHIFALTVCGLLGMRTGGRNILIPNPRDIPGFIKELKKYQVHIFPAVNTLYNALLNNPDFDKLDFSKLIV  331 (557)
T ss_pred             CcEEEEeCCcHHHHHHHHHHHHHHhhcceEEEecCCcCHHHHHHHHHHhCCeeeecCHHHHHHHHcCcCcCcCCchhheE
Confidence            4578889999999998777788888888877766 457899999999999999999999999998876655667889999


Q ss_pred             EeecCCCCCHHHHHHHHHhCCCCceeeccccccccccccccccCCCCCCCCCCccccCCCcEEEEEeCCCCCCCCCCCce
Q 026609           92 VGSGAAPLGKELMEECAKNVPSATVIQVGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLG  171 (236)
Q Consensus        92 i~~~G~~~~~~~~~~~~~~~~~~~v~~~~YG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~g~~G  171 (236)
                      ++.+|+++++.+.+.|.+.++ ..+++ .||+||++.++...... .......+|.|++++.++++| +++++++.|+.|
T Consensus       332 ~~~gg~~~~~~~~~~~~~~~~-~~~~~-~YG~tE~~~~~~~~~~~-~~~~~~~vG~p~~g~~v~i~d-~~~~~~~~g~~G  407 (557)
T PRK07059        332 ANGGGMAVQRPVAERWLEMTG-CPITE-GYGLSETSPVATCNPVD-ATEFSGTIGLPLPSTEVSIRD-DDGNDLPLGEPG  407 (557)
T ss_pred             EEeccccCCHHHHHHHHHHhC-CCeee-ccccccccchhhcCCCC-CCCcCCcccCccCCcEEEEEC-CCCCCCCCCCce
Confidence            999999999999999999886 88999 99999998876544322 233457899999999999999 578999999999


Q ss_pred             EEEEecCccchhhcCCcccccccccCCCeEecCceEEEcCCCcEEEEcccCCceeeccEEeecCC
Q 026609          172 EIWLRGPNMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSNW  236 (236)
Q Consensus       172 el~v~~~~~~~~~~~~~~~~~~~~~~~~~~~TgD~~~~~~~g~~~~~GR~~d~i~~~G~~i~p~~  236 (236)
                      ||+++++.++.+|+++++.+...+..+|||+|||+++++++|.+++.||++|+|+++|++|+|.|
T Consensus       408 el~v~g~~~~~gY~~~~~~~~~~~~~~g~~~TGDl~~~~~~g~~~~~GR~~~~i~~~G~~i~p~~  472 (557)
T PRK07059        408 EICIRGPQVMAGYWNRPDETAKVMTADGFFRTGDVGVMDERGYTKIVDRKKDMILVSGFNVYPNE  472 (557)
T ss_pred             EEEEeCCccchhhhcCHHHHhhhcccCCceecCcEEEEcCCCcEEEecccccceEECCEEEcHHH
Confidence            99999999999999999998887877899999999999999999999999999999999999864

>PRK06178 acyl-CoA synthetase; Validated

Probab=100.00  E-value=6.1e-34  Score=246.98  Aligned_cols=227  Identities=30%  Similarity=0.461  Sum_probs=194.8

Q ss_pred             ccCCCCcEEEEecChhhHHhHHHHHHHHhhcCcEEEEcCCCCHHHHHHHHHhcCceEEEeChHHHHHHHhcCCcCCCCCC
Q 026609            8 TAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLS   87 (236)
Q Consensus         8 ~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~   87 (236)
                      ....++|++++.+|++|.+|+...++.+++.|+++++.+++++..+++.+++++++.+.++|..+..+++.......+++
T Consensus       246 ~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~l~~~~~~~~~~~~i~~~~~t~~~~~~~~~~~l~~~~~~~~~~l~  325 (567)
T PRK06178        246 VVGGEDSVFLSFLPEFWIAGENFGLLFPLFSGATLVLLARWDAVAFMAAVERYRVTRTVMLVDNAVELMDHPRFAEYDLS  325 (567)
T ss_pred             ccCCCCcEEEEecchHHHHHHHHHHHHHHHcCceEEEeCCCCHHHHHHHHHHhCCeEEeccHHHHHHHHhCCCCCCCCcc
Confidence            45678899999999999999977888999999999999999999999999999999999999999998877655555677


Q ss_pred             CceEEee--cCCCCCHHHHHHHHHhCCCCceeeccccccccccccccccCCC-----CCCCCCCccccCCCcEEEEEeCC
Q 026609           88 SLKLVGS--GAAPLGKELMEECAKNVPSATVIQVGYGLTETSGIATMENSFA-----GSRNIGSAGALAPGVEALIVSVD  160 (236)
Q Consensus        88 ~lr~i~~--~G~~~~~~~~~~~~~~~~~~~v~~~~YG~tE~g~~~~~~~~~~-----~~~~~~~~g~p~~~~~~~~~~~~  160 (236)
                      ++|.+..  .++.+++++.+.|++.++ ..++.+.||+||++..+.......     ....+..+|.|+++++++++|++
T Consensus       326 ~l~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~vG~p~~g~~v~v~d~~  404 (567)
T PRK06178        326 SLRQVRVVSFVKKLNPDYRQRWRALTG-SVLAEAAWGMTETHTCDTFTAGFQDDDFDLLSQPVFVGLPVPGTEFKICDFE  404 (567)
T ss_pred             hheeeeeccccccCCHHHHHHHHHHhC-CcccccccccccccccceeccccccCccccccCCcccccccCCcEEEEEcCC
Confidence            8888654  458999999999999987 555543799999876654322110     02234568999999999999977


Q ss_pred             CCCCCCCCCceEEEEecCccchhhcCCcccccccccCCCeEecCceEEEcCCCcEEEEcccCCceeeccEEeecCC
Q 026609          161 TQKPLPPNQLGEIWLRGPNMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSNW  236 (236)
Q Consensus       161 ~~~~~~~g~~Gel~v~~~~~~~~~~~~~~~~~~~~~~~~~~~TgD~~~~~~~g~~~~~GR~~d~i~~~G~~i~p~~  236 (236)
                      ++++++.|+.|||+++|+.++.+|+++++.+...+ .+|||+|||+++++++|++++.||++|+|+++|++|+|.|
T Consensus       405 ~~~~~~~g~~Gel~v~g~~v~~gY~~~~~~~~~~~-~dg~~~TGDl~~~~~~g~l~i~GR~~d~i~~~G~~i~~~e  479 (567)
T PRK06178        405 TGELLPLGAEGEIVVRTPSLLKGYWNKPEATAEAL-RDGWLHTGDIGKIDEQGFLHYLGRRKEMLKVNGMSVFPSE  479 (567)
T ss_pred             CCCcCCCCCceEEEEECCcccccccCChhhhhhcc-cCCceeecceEEEecCCeEEEEecccccEEECCEEECHHH
Confidence            89999999999999999999999999998887776 6789999999999999999999999999999999999865

>COG1021 EntE Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=100.00  E-value=1.8e-35  Score=232.53  Aligned_cols=227  Identities=28%  Similarity=0.399  Sum_probs=202.7

Q ss_pred             eeccCCCCcEEEEecChhhHHhHHH-HHHHHhhcCcEEEEcCCCCHHHHHHHHHhcCceEEEeChHHHHHHHhcCCcCCC
Q 026609            6 QETAGELDYVFLCVLPLFHVFGLAV-ITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKF   84 (236)
Q Consensus         6 ~~~~~~~~d~~l~~~p~~~~~g~~~-~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~   84 (236)
                      +-+++.+++++++.+|..|-+-+.. ..++.++.|+|+|+.+..+++....+|++++||+...+|.+...+++..+....
T Consensus       223 EiC~~~~~tvyL~~LP~AHNfplssPG~LGv~~agG~VVla~~psp~~~F~lIerh~Vt~tALVPpla~LWlqa~e~~~~  302 (542)
T COG1021         223 EICGFDQQTVYLCALPAAHNFPLSSPGALGVFLAGGTVVLAPDPSPELCFPLIERHGVTVTALVPPLASLWLQAAEWERA  302 (542)
T ss_pred             hhhCcCccceEEEecccccCCCCCCcchhheeeeccEEEECCCCCHHHHHHHHHHhccceEEeccHHHHHHHHhhhcccC
Confidence            4478889999999999999877743 378999999999999999999999999999999999999999999999988999


Q ss_pred             CCCCceEEeecCCCCCHHHHHHHHHhCCCCceeeccccccccccccccccCCCCCCCCCCccccCC-CcEEEEEeCCCCC
Q 026609           85 DLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVGYGLTETSGIATMENSFAGSRNIGSAGALAP-GVEALIVSVDTQK  163 (236)
Q Consensus        85 ~l~~lr~i~~~G~~~~~~~~~~~~~~~~~~~v~~~~YG~tE~g~~~~~~~~~~~~~~~~~~g~p~~-~~~~~~~~~~~~~  163 (236)
                      ++++||.+=.||..+++++.+++...++ +.+-+ .||+.|--. ++..-.+..+.-..+.|+|+. .=+++++| ++|+
T Consensus       303 ~LsSLrllQVGGarl~~~~Arrv~~~lg-C~LQQ-VFGMAEGLv-nyTRLDDp~E~i~~TQGrPlsP~DEvrvvD-~dg~  378 (542)
T COG1021         303 DLSSLRLLQVGGARLSATLARRVPAVLG-CQLQQ-VFGMAEGLV-NYTRLDDPPEIIIHTQGRPLSPDDEVRVVD-ADGN  378 (542)
T ss_pred             CchheeEEeecCcccCHHHHhhchhhhC-chHHH-Hhhhhhhhh-cccccCCchHheeecCCCcCCCcceeEEec-CCCC
Confidence            9999999999999999999999999998 88888 999999633 333222323444567888876 56788999 7999


Q ss_pred             CCCCCCceEEEEecCccchhhcCCcccccccccCCCeEecCceEEEcCCCcEEEEcccCCceeeccEEeecCC
Q 026609          164 PLPPNQLGEIWLRGPNMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSNW  236 (236)
Q Consensus       164 ~~~~g~~Gel~v~~~~~~~~~~~~~~~~~~~~~~~~~~~TgD~~~~~~~g~~~~~GR~~d~i~~~G~~i~p~~  236 (236)
                      ++++|+.|+|.++||-...||+..++.+...|+.+|+|+|||+++++++|++.+.||.+|+|+.+|+||..+|
T Consensus       379 pv~pGE~G~LltRGPYTirGYyrap~HNa~aF~a~GFYrsGD~V~~~~dGyl~V~GR~KDQINRgGEKIAAeE  451 (542)
T COG1021         379 PVAPGEVGELLTRGPYTIRGYYRAPEHNARAFDADGFYRSGDLVRRDPDGYLVVEGRVKDQINRGGEKIAAEE  451 (542)
T ss_pred             CCCCCCcceeeecCCeeeeeeccCchhhhhccCcCCceecCceeEecCCceEEEEeeehhhhccccchhhHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999999997654

>PRK12467 peptide synthase; Provisional

Probab=100.00  E-value=2.5e-34  Score=287.79  Aligned_cols=229  Identities=22%  Similarity=0.294  Sum_probs=199.0

Q ss_pred             eeeeccCCCCcEEEEecChhhHHhHHHHHHHHhhcCcEEEEcCC---CCHHHHHHHHHhcCceEEEeChHHHHHHHhcCC
Q 026609            4 MDQETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK---FDLEMFLRAIEKHRVTHIWVVPPLILALAKHGL   80 (236)
Q Consensus         4 ~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~---~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~   80 (236)
                      +.+.++..++|++++.+|++|..++ ..++.++..|+++++.+.   .++..+++.++++++|++.++|++++.|++...
T Consensus      1750 ~~~~~~~~~~d~~l~~~~~~fd~~~-~~~~~~L~~G~~lvi~~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~ 1828 (3956)
T PRK12467       1750 TQEAYQLSAADVVLQFTSFAFDVSV-WELFWPLINGARLVIAPPGAHRDPEQLIQLIERQQVTTLHFVPSMLQQLLQMDE 1828 (3956)
T ss_pred             HHHhcCCCcccEEEEecCccHHHHH-HHHHHHHhCCCEEEEcChhhcCCHHHHHHHHHHcCCeEEECCHHHHHHHHhhcc
Confidence            3456788899999999999999998 688999999999999873   578999999999999999999999999987532


Q ss_pred             cCCCCCCCceEEeecCCCCCHHHHHHHHHhCCCCceeeccccccccccccccccCC---CCCCCCCCccccCCCcEEEEE
Q 026609           81 VKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVGYGLTETSGIATMENSF---AGSRNIGSAGALAPGVEALIV  157 (236)
Q Consensus        81 ~~~~~l~~lr~i~~~G~~~~~~~~~~~~~~~~~~~v~~~~YG~tE~g~~~~~~~~~---~~~~~~~~~g~p~~~~~~~~~  157 (236)
                       ....++++|.+++|||++++++.+.|.+.++...+++ .||+||++..++.....   ........+|+|++++.+.++
T Consensus      1829 -~~~~~~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n-~YG~TE~t~~~t~~~~~~~~~~~~~~~~iG~p~~~~~~~vl 1906 (3956)
T PRK12467       1829 -QVEHPLSLRRVVCGGEALEVEALRPWLERLPDTGLFN-LYGPTETAVDVTHWTCRRKDLEGRDSVPIGQPIANLSTYIL 1906 (3956)
T ss_pred             -ccccCCCceEEEEccccCCHHHHHHHHHhCCCCeEEe-CccCCcCEEeEEEEeccccccccCCCCCcccccCCCEEEEE
Confidence             3346789999999999999999999999987677888 99999998766543221   112234679999999999999


Q ss_pred             eCCCCCCCCCCCceEEEEecCccchhhcCCccccccccc-------CCCeEecCceEEEcCCCcEEEEcccCCceeeccE
Q 026609          158 SVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQATKLTID-------KKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGF  230 (236)
Q Consensus       158 ~~~~~~~~~~g~~Gel~v~~~~~~~~~~~~~~~~~~~~~-------~~~~~~TgD~~~~~~~g~~~~~GR~~d~i~~~G~  230 (236)
                      | +.++++|.|..|||+|+|++++.||+++++.+...|.       ..+||+|||++++++||.++|+||+||+||++|+
T Consensus      1907 d-~~~~~vp~G~~GEl~i~G~~v~~GYl~~p~~t~~~f~~~p~~~~~~r~yrTGDl~~~~~dG~l~~~GR~D~qVki~G~ 1985 (3956)
T PRK12467       1907 D-ASLNPVPIGVAGELYLGGVGLARGYLNRPALTAERFVADPFGTVGSRLYRTGDLARYRADGVIEYLGRIDHQVKIRGF 1985 (3956)
T ss_pred             C-CCCCCCCCCCceEEEeccccccccccCChhhhhhhCcCCCCCCCCccceeccceEEECCCCCEEEecccCceEEeCeE
Confidence            8 6899999999999999999999999999999888772       2359999999999999999999999999999999


Q ss_pred             EeecCC
Q 026609          231 QVTSNW  236 (236)
Q Consensus       231 ~i~p~~  236 (236)
                      +|.|.|
T Consensus      1986 rIel~e 1991 (3956)
T PRK12467       1986 RIELGE 1991 (3956)
T ss_pred             EechHH
Confidence            999875

>PRK08008 caiC putative crotonobetaine/carnitine-CoA ligase; Validated

Probab=100.00  E-value=1.1e-33  Score=242.80  Aligned_cols=223  Identities=28%  Similarity=0.402  Sum_probs=194.2

Q ss_pred             cCCCCcEEEEecChhhHHhHHHHHHHHhhcCcEEEEcCCCCHHHHHHHHHhcCceEEEeChHHHHHHHhcCCcCCCCCCC
Q 026609            9 AGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSS   88 (236)
Q Consensus         9 ~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~   88 (236)
                      .+.++|++++.+|++|..+....++.++..|+++++.+++++..+++.++++++|.+.++|++++.++..........+.
T Consensus       210 ~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~  289 (517)
T PRK08008        210 ALRDDDVYLTVMPAFHIDCQCTAAMAAFSAGATFVLLEKYSARAFWGQVCKYRATITECIPMMIRTLMVQPPSANDRQHC  289 (517)
T ss_pred             CCCCCCeEEEecCcHHHHHHHHHHHHHHhcCcEEEEccccCHHHHHHHHHHcCCcEEechHHHHHHHHhCCCcccccccc
Confidence            45778999999999999888788899999999999999999999999999999999999999999998765444444567


Q ss_pred             ceEEeecCCCCCHHHHHHHHHhCCCCceeeccccccccccccccccCCCCCCCCCCccccCCCcEEEEEeCCCCCCCCCC
Q 026609           89 LKLVGSGAAPLGKELMEECAKNVPSATVIQVGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPN  168 (236)
Q Consensus        89 lr~i~~~G~~~~~~~~~~~~~~~~~~~v~~~~YG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~g  168 (236)
                      +|.+.++ .+++++..+.|.+.++ ..+++ .||+||++..+...... .......+|.|+++++++++| +++++++.|
T Consensus       290 l~~~~~~-~~~~~~~~~~~~~~~~-~~~~~-~YG~tE~~~~~~~~~~~-~~~~~~~~G~~~~g~~~~i~d-~~~~~~~~g  364 (517)
T PRK08008        290 LREVMFY-LNLSDQEKDAFEERFG-VRLLT-SYGMTETIVGIIGDRPG-DKRRWPSIGRPGFCYEAEIRD-DHNRPLPAG  364 (517)
T ss_pred             ceeeEEe-cCCCHHHHHHHHHHhC-CeEEe-eccccccccccccCCcc-ccccCCccccCCCCcEEEEEC-CCCCCCCCC
Confidence            8877765 4788999999999886 88888 99999998655543322 234456799999999999999 578999999


Q ss_pred             CceEEEEec---CccchhhcCCcccccccccCCCeEecCceEEEcCCCcEEEEcccCCceeeccEEeecCC
Q 026609          169 QLGEIWLRG---PNMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSNW  236 (236)
Q Consensus       169 ~~Gel~v~~---~~~~~~~~~~~~~~~~~~~~~~~~~TgD~~~~~~~g~~~~~GR~~d~i~~~G~~i~p~~  236 (236)
                      +.|||++++   +.++.+|+++++.+...+..+|||+|||+++++++|++++.||.||+||++|++|+|.|
T Consensus       365 ~~Gel~v~g~~~~~~~~gy~~~~~~~~~~~~~~g~~~TGDl~~~~~~g~~~~~GR~~d~i~~~G~~i~p~~  435 (517)
T PRK08008        365 EIGEICIKGVPGKTIFKEYYLDPKATAKVLEADGWLHTGDTGYVDEEGFFYFVDRRCNMIKRGGENVSCVE  435 (517)
T ss_pred             CcceEEEeCCCCcchhhhHhCChHHHhhcccCCCCeeccceEEECCCCcEEEeecccceEEeCCEEECHHH
Confidence            999999997   68999999999999988878899999999999999999999999999999999999864

>PRK13391 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=1e-33  Score=242.68  Aligned_cols=223  Identities=29%  Similarity=0.407  Sum_probs=192.1

Q ss_pred             eccCCCCcEEEEecChhhHHhHHHHHHHHhhcCcEEEEcCCCCHHHHHHHHHhcCceEEEeChHHHHHHHhcCCc--CCC
Q 026609            7 ETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLV--KKF   84 (236)
Q Consensus         7 ~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~--~~~   84 (236)
                      .++..+++++++.+|++|.+++ ...+.++..|+++++.+.+++..+++.++++++|.+.++|+++..+++....  ...
T Consensus       194 ~~~~~~~~~~l~~~p~~h~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~  272 (511)
T PRK13391        194 LWGFRSDMVYLSPAPLYHSAPQ-RAVMLVIRLGGTVIVMEHFDAEQYLALIEEYGVTHTQLVPTMFSRMLKLPEEVRDKY  272 (511)
T ss_pred             hcCCCCCCeEEEcCCHHHHHHH-HHHHHHHHcCceEEECCCCCHHHHHHHHHHhCCeEEEehHHHHHHHHhCchhhcccC
Confidence            3456778999999999999998 5667889999999999889999999999999999999999999988765432  233


Q ss_pred             CCCCceEEeecCCCCCHHHHHHHHHhCCCCceeeccccccccccccccccCCCCCCCCCCccccCCCcEEEEEeCCCCCC
Q 026609           85 DLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKP  164 (236)
Q Consensus        85 ~l~~lr~i~~~G~~~~~~~~~~~~~~~~~~~v~~~~YG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~  164 (236)
                      +++++|.++.+|+++++++.+.+.+.++ ..+++ .||+||++.++.... ......++.+|+|.++ .++++| +++++
T Consensus       273 ~~~~l~~~~~gg~~~~~~~~~~~~~~~g-~~v~~-~YG~tE~~~~~~~~~-~~~~~~~~~vG~~~~g-~~~i~d-~~~~~  347 (511)
T PRK13391        273 DLSSLEVAIHAAAPCPPQVKEQMIDWWG-PIIHE-YYAATEGLGFTACDS-EEWLAHPGTVGRAMFG-DLHILD-DDGAE  347 (511)
T ss_pred             CccceeEEEEccCCCCHHHHHHHHHHcC-Cceee-eeccccccceEEecC-ccccccCCCcCCcccc-eEEEEC-CCCCC
Confidence            5789999999999999999999999887 77888 999999987655422 2123455789999999 688888 67899


Q ss_pred             CCCCCceEEEEecCccchhhcCCcccccccccCC-CeEecCceEEEcCCCcEEEEcccCCceeeccEEeecCC
Q 026609          165 LPPNQLGEIWLRGPNMMRGYYNNEQATKLTIDKK-GWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSNW  236 (236)
Q Consensus       165 ~~~g~~Gel~v~~~~~~~~~~~~~~~~~~~~~~~-~~~~TgD~~~~~~~g~~~~~GR~~d~i~~~G~~i~p~~  236 (236)
                      ++.|+.|||+++++ .+.+|+++++.+...+..+ +||+|||+++++++|.+++.||.||++|++|.+|+|.|
T Consensus       348 ~~~g~~Gel~~~g~-~~~gy~~~~~~~~~~~~~~~~w~~TGD~g~~~~~g~l~~~gR~~~~i~~~G~~v~~~e  419 (511)
T PRK13391        348 LPPGEPGTIWFEGG-RPFEYLNDPAKTAEARHPDGTWSTVGDIGYVDEDGYLYLTDRAAFMIISGGVNIYPQE  419 (511)
T ss_pred             CCCCCceEEEEecC-cceEEcCChhHhHHhhccCCCEEecCCEEEECCCccEEEeccCCCEEEeCCEEECHHH
Confidence            99999999999999 8889999998887777554 89999999999999999999999999999999999864

>PRK07008 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=8.8e-34  Score=244.59  Aligned_cols=223  Identities=26%  Similarity=0.389  Sum_probs=189.3

Q ss_pred             eeccCCCCcEEEEecChhhHHhHHHHHHHHhhcCcEEEEcC-CCCHHHHHHHHHhcCceEEEeChHHHHHHHhcCCcCCC
Q 026609            6 QETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKF   84 (236)
Q Consensus         6 ~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~   84 (236)
                      ..++..++|+++..+|++|.+++ ..++.++..|+++++.+ .+++..+++.++++++|.+.++|+++..+++..+....
T Consensus       212 ~~~~~~~~d~~l~~~p~~h~~~~-~~~~~~l~~G~~~~~~~~~~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~~~  290 (539)
T PRK07008        212 DAMGLSARDAVLPVVPMFHVNAW-GLPYSAPLTGAKLVLPGPDLDGKSLYELIEAERVTFSAGVPTVWLGLLNHMREAGL  290 (539)
T ss_pred             cccCCCCCceEEecCchHHhhhH-HHHHHHHhcCceEEEecCCcCHHHHHHHHHHcCCEEEEechHHHHHHHhcccccCC
Confidence            35677889999999999999888 45577889999999874 57899999999999999999999999999988766667


Q ss_pred             CCCCceEEeecCCCCCHHHHHHHHHhCCCCceeeccccccccccccccccCCC---------CCCCCCCccccCCCcEEE
Q 026609           85 DLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVGYGLTETSGIATMENSFA---------GSRNIGSAGALAPGVEAL  155 (236)
Q Consensus        85 ~l~~lr~i~~~G~~~~~~~~~~~~~~~~~~~v~~~~YG~tE~g~~~~~~~~~~---------~~~~~~~~g~p~~~~~~~  155 (236)
                      +++++|.++++|+++++++.++|.+.++ ..+++ .||+||++..+.......         .......+|+|+|+++++
T Consensus       291 ~~~~l~~~~~~G~~l~~~~~~~~~~~~~-~~l~~-~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~pg~~~~  368 (539)
T PRK07008        291 RFSTLRRTVIGGSACPPAMIRTFEDEYG-VEVIH-AWGMTEMSPLGTLCKLKWKHSQLPLDEQRKLLEKQGRVIYGVDMK  368 (539)
T ss_pred             CcccceEEEEcCCCCCHHHHHHHHHHhC-Cceec-ccccccccccceecccccccccCCchhhhhhcccCCccccceEEE
Confidence            7889999999999999999999999986 88999 999999987554322110         011235689999999999


Q ss_pred             EEeCCCCCCCCCC--CceEEEEecCccchhhcCCcccccccccCCCeEecCceEEEcCCCcEEEEcccCCceeeccEEee
Q 026609          156 IVSVDTQKPLPPN--QLGEIWLRGPNMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVT  233 (236)
Q Consensus       156 ~~~~~~~~~~~~g--~~Gel~v~~~~~~~~~~~~~~~~~~~~~~~~~~~TgD~~~~~~~g~~~~~GR~~d~i~~~G~~i~  233 (236)
                      ++| +++++++.+  +.|||+++|+.++.+|++++..   .+ .+|||+|||+++++++|.+++.||.||+||++|++|+
T Consensus       369 i~d-~~~~~~~~~~~~~Gei~v~g~~~~~gy~~~~~~---~~-~~g~~~TGD~~~~~~dg~l~~~GR~~d~i~~~G~~v~  443 (539)
T PRK07008        369 IVG-DDGRELPWDGKAFGDLQVRGPWVIDRYFRGDAS---PL-VDGWFPTGDVATIDADGFMQITDRSKDVIKSGGEWIS  443 (539)
T ss_pred             EEC-CCCCccCCCCCcceEEEEeCCccchhhcCChhh---hh-cCCCcccCceEEEcCCCcEEEeecccCEEEeCCeEEc
Confidence            999 467777753  5799999999999999998743   23 3689999999999999999999999999999999999


Q ss_pred             cCC
Q 026609          234 SNW  236 (236)
Q Consensus       234 p~~  236 (236)
                      |.|
T Consensus       444 p~e  446 (539)
T PRK07008        444 SID  446 (539)
T ss_pred             HHH
Confidence            864

>PRK12316 peptide synthase; Provisional

Probab=100.00  E-value=3.1e-34  Score=290.86  Aligned_cols=228  Identities=19%  Similarity=0.240  Sum_probs=197.1

Q ss_pred             eeeccCCCCcEEEEecChhhHHhHHHHHHHHhhcCcEEEEcCC--CCHHHHHHHHHhcCceEEEeChHHHHHHHhcCCcC
Q 026609            5 DQETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK--FDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVK   82 (236)
Q Consensus         5 ~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~--~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~   82 (236)
                      ...++..++|++++++|++|..++ ..++.++..|+++++.+.  +++..+++.++++++|+++++|++++.|.+.....
T Consensus      2179 ~~~~~~~~~d~~l~~~~~~fd~~~-~~~~~~L~~G~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~ 2257 (5163)
T PRK12316       2179 GERYELSPADCELQFMSFSFDGAH-EQWFHPLLNGARVLIRDDELWDPEQLYDEMERHGVTILDFPPVYLQQLAEHAERD 2257 (5163)
T ss_pred             HHhcCCCCcceEEEecCchHHHHH-HHHHHHHhCCCEEEeCCcccCCHHHHHHHHHHcCCeEEEcChHHHHHHHhhhhcc
Confidence            445778899999999999999888 789999999999988763  68999999999999999999999999998765332


Q ss_pred             CCCCCCceEEeecCCCCCHHHHHHHHHhCCCCceeeccccccccccccccccCCCCC---CCCCCccccCCCcEEEEEeC
Q 026609           83 KFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVGYGLTETSGIATMENSFAGS---RNIGSAGALAPGVEALIVSV  159 (236)
Q Consensus        83 ~~~l~~lr~i~~~G~~~~~~~~~~~~~~~~~~~v~~~~YG~tE~g~~~~~~~~~~~~---~~~~~~g~p~~~~~~~~~~~  159 (236)
                      . ..+++|.+++|||++++++++.|.+.++...+++ .||+||++..++........   .....+|+|++++++.++| 
T Consensus      2258 ~-~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n-~YG~TE~~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d- 2334 (5163)
T PRK12316       2258 G-RPPAVRVYCFGGEAVPAASLRLAWEALRPVYLFN-GYGPTEAVVTPLLWKCRPQDPCGAAYVPIGRALGNRRAYILD- 2334 (5163)
T ss_pred             c-CCcceeEEEEecccCCHHHHHHHHHhCCCcEEEE-CccchhheeeeeeeecccccccCCCcCCcccccCCCEEEEEC-
Confidence            2 3458999999999999999999999887778888 99999998766543222111   1225789999999999999 


Q ss_pred             CCCCCCCCCCceEEEEecCccchhhcCCccccccccc-------CCCeEecCceEEEcCCCcEEEEcccCCceeeccEEe
Q 026609          160 DTQKPLPPNQLGEIWLRGPNMMRGYYNNEQATKLTID-------KKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV  232 (236)
Q Consensus       160 ~~~~~~~~g~~Gel~v~~~~~~~~~~~~~~~~~~~~~-------~~~~~~TgD~~~~~~~g~~~~~GR~~d~i~~~G~~i  232 (236)
                      ++++++|.|..|||+|+|++++.||+++++.+...|.       .++||+|||++++++||.++++||+||+||++|+||
T Consensus      2335 ~~~~~vp~g~~GEl~i~G~~v~~GY~~~p~~T~~~f~~~~~~~~~~~~yrTGDl~~~~~dG~l~~~GR~d~~iki~G~ri 2414 (5163)
T PRK12316       2335 ADLNLLAPGMAGELYLGGEGLARGYLNRPGLTAERFVPDPFSASGERLYRTGDLARYRADGVVEYLGRIDHQVKIRGFRI 2414 (5163)
T ss_pred             CCCCCCCCCCeeEEEecchhhcccccCChhhhhhhccCCCCCCCCCeeEecccEEEEcCCCcEEEecCCCCeEEEcCccC
Confidence            5789999999999999999999999999999988873       235999999999999999999999999999999999


Q ss_pred             ecCC
Q 026609          233 TSNW  236 (236)
Q Consensus       233 ~p~~  236 (236)
                      +|.|
T Consensus      2415 e~~e 2418 (5163)
T PRK12316       2415 ELGE 2418 (5163)
T ss_pred             ChHH
Confidence            9976

>PRK12476 putative fatty-acid--CoA ligase; Provisional

Probab=100.00  E-value=1.2e-34  Score=253.32  Aligned_cols=226  Identities=26%  Similarity=0.410  Sum_probs=179.1

Q ss_pred             cc-CCCCcEEEEecChhhHHhHHHHHHHHhhcCcEEEEcC-CC--CHHHHHHHHH--hcCceEEEeChHHHHHHHhcCC-
Q 026609            8 TA-GELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KF--DLEMFLRAIE--KHRVTHIWVVPPLILALAKHGL-   80 (236)
Q Consensus         8 ~~-~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~-~~--~~~~~~~~i~--~~~~t~~~~~P~~~~~l~~~~~-   80 (236)
                      ++ +.++|++++++|++|..|+...++.++..|+++++.+ .+  ++..+++.++  +++++.++.+|+++..++.... 
T Consensus       229 ~~~~~~~~~~l~~~Pl~h~~g~~~~~~~~~~gg~~~~~~~~~~~~~p~~~~~~i~~~~~~~t~~~~~P~~~~~l~~~~~~  308 (612)
T PRK12476        229 IDLLDRNTHGVSWLPLYHDMGLSMIGFPAVYGGHSTLMSPTAFVRRPQRWIKALSEGSRTGRVVTAAPNFAYEWAAQRGL  308 (612)
T ss_pred             hccCCCCceEEEeCCcccccchHHHHHHHhcCCeEEEECHHHHHHHHHHHHHHHhhhccCCeEEEeCCcHHHHHHHHhcC
Confidence            44 6778999999999999999555555555555555443 23  7889999995  5899999999998888776421 


Q ss_pred             ---cCCCCCCCceEEeecCCCCCHHHHHHHHHhCC-----CCceeeccccccccccccccccCCCC--------------
Q 026609           81 ---VKKFDLSSLKLVGSGAAPLGKELMEECAKNVP-----SATVIQVGYGLTETSGIATMENSFAG--------------  138 (236)
Q Consensus        81 ---~~~~~l~~lr~i~~~G~~~~~~~~~~~~~~~~-----~~~v~~~~YG~tE~g~~~~~~~~~~~--------------  138 (236)
                         ....+++++| ++++|+++++++.+.|.+.|+     ...+.+ .||+||++..+........              
T Consensus       309 ~~~~~~~~l~~lr-~~~gg~~~~~~~~~~~~~~~~~~g~~~~~~~~-~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~g  386 (612)
T PRK12476        309 PAEGDDIDLSNVV-LIIGSEPVSIDAVTTFNKAFAPYGLPRTAFKP-SYGIAEATLFVATIAPDAEPSVVYLDREQLGAG  386 (612)
T ss_pred             hhhhcCcchhHhe-EEecccCCCHHHHHHHHHHHHhcCCCcccccc-ccchhhhheeeeccCCCCCceEEEEcHHHhhCC
Confidence               1234678999 999999999999999999873     234677 9999998765443211100              


Q ss_pred             -----------CCCCCCccccCCCcEEEEEeCCCCCCCCCCCceEEEEecCccchhhcCCccccccccc-----------
Q 026609          139 -----------SRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQATKLTID-----------  196 (236)
Q Consensus       139 -----------~~~~~~~g~p~~~~~~~~~~~~~~~~~~~g~~Gel~v~~~~~~~~~~~~~~~~~~~~~-----------  196 (236)
                                 ......+|+|+++++++++|++++++++.|+.|||+++|+.++.+|+++++.+...|.           
T Consensus       387 ~~~~~~~~~~~~~~~~~~G~~~~g~~v~ivd~~~g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~g~  466 (612)
T PRK12476        387 RAVRVAADAPNAVAHVSCGQVARSQWAVIVDPDTGAELPDGEVGEIWLHGDNIGRGYWGRPEETERTFGAKLQSRLAEGS  466 (612)
T ss_pred             CeeecCCCCCCcceeEeCCCcCCCCEEEEEeCCCCcCCCCCCEEEEEEcCCcccccccCChHHHHHHHhhhhcccccccc
Confidence                       0012468999999999999966599999999999999999999999999998877763           


Q ss_pred             -------CCCeEecCceEEEcCCCcEEEEcccCCceeeccEEeecCC
Q 026609          197 -------KKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSNW  236 (236)
Q Consensus       197 -------~~~~~~TgD~~~~~~~g~~~~~GR~~d~i~~~G~~i~p~~  236 (236)
                             .++||+|||+|++ ++|++++.||+||+||++|++|+|+|
T Consensus       467 ~~~~~~~~~~w~~TGDlg~~-~dG~l~i~GR~~d~I~~~G~~I~p~e  512 (612)
T PRK12476        467 HADGAADDGTWLRTGDLGVY-LDGELYITGRIADLIVIDGRNHYPQD  512 (612)
T ss_pred             ccccccCCCCeeecccccee-ECCEEEEEeccCcEEEECCcccCHHH
Confidence                   1359999999998 59999999999999999999999975

>TIGR01734 D-ala-DACP-lig D-alanine--poly(phosphoribitol) ligase, subunit 1

Probab=100.00  E-value=1.3e-33  Score=241.52  Aligned_cols=226  Identities=19%  Similarity=0.253  Sum_probs=192.6

Q ss_pred             eccCCCCcEEEEecChhhHHhHHHHHHHHhhcCcEEEEcCC---CCHHHHHHHHHhcCceEEEeChHHHHHHHhcCCcCC
Q 026609            7 ETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK---FDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKK   83 (236)
Q Consensus         7 ~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~---~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~   83 (236)
                      .++...+|++++.+|++|..++ ..++.++..|+++++.++   .++..+++.+++++++.+.++|+++..++.......
T Consensus       176 ~~~~~~~~~~l~~~p~~~~~~~-~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~p~~~~~~l~~~~~~~  254 (502)
T TIGR01734       176 DFPLSEGKQFLNQAPFSFDLSV-MDLYPCLASGGTLHCLDKDITNNFKLLFEELPKTGLNVWVSTPSFVDMCLLDPNFNQ  254 (502)
T ss_pred             hCCCCCCceEEeecCceechhH-HHHHHHHHCCCEEEEcCHHHhcCHHHHHHHHHHcCCeEEEEChhHHHHHHhcccccc
Confidence            3567788999999999999988 678899999999999874   578999999999999999999999988776654455


Q ss_pred             CCCCCceEEeecCCCCCHHHHHHHHHhCCCCceeeccccccccccccccccC-C--CCCCCCCCccccCCCcEEEEEeCC
Q 026609           84 FDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVGYGLTETSGIATMENS-F--AGSRNIGSAGALAPGVEALIVSVD  160 (236)
Q Consensus        84 ~~l~~lr~i~~~G~~~~~~~~~~~~~~~~~~~v~~~~YG~tE~g~~~~~~~~-~--~~~~~~~~~g~p~~~~~~~~~~~~  160 (236)
                      ..++++|.++++|+++++++.+.+.+.+++..+++ .||+||++........ .  ........+|.|.++++++++| +
T Consensus       255 ~~~~~l~~~~~~G~~~~~~~~~~~~~~~~~~~~~~-~yG~tE~~~~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~i~~-~  332 (502)
T TIGR01734       255 ENYPHLTHFLFCGEELPVKTAKALLERFPKATIYN-TYGPTEATVAVTSVKITQEILDQYPRLPIGFAKPDMNLFIMD-E  332 (502)
T ss_pred             ccCCcccEEEEcCCcCCHHHHHHHHHHCCCcEEEe-CccCCcceEEEEEEEccccccccCCccccccccCCCEEEEEC-C
Confidence            67889999999999999999999999998788889 9999998754432211 1  1122335689999999999999 4


Q ss_pred             CCCCCCCCCceEEEEecCccchhhcCCcccccccc---cCCCeEecCceEEEcCCCcEEEEcccCCceeeccEEeecCC
Q 026609          161 TQKPLPPNQLGEIWLRGPNMMRGYYNNEQATKLTI---DKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSNW  236 (236)
Q Consensus       161 ~~~~~~~g~~Gel~v~~~~~~~~~~~~~~~~~~~~---~~~~~~~TgD~~~~~~~g~~~~~GR~~d~i~~~G~~i~p~~  236 (236)
                      +++++++|+.|||+++++.++.+|+++++.+...+   ...+||+|||+++++++ ++++.||.+|+|+++|++|+|+|
T Consensus       333 ~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~~~~TGDlg~~~~~-~l~i~GR~~d~i~~~G~~v~~~~  410 (502)
T TIGR01734       333 EGEPLPEGEKGEIVIVGPSVSKGYLNNPEKTAEAFFSHEGQPAYRTGDAGTITDG-QLFYQGRLDFQIKLHGYRIELED  410 (502)
T ss_pred             CCCCCCCCCeeEEEEccccccccccCCcccchHhheeCCCcEEEECCCEEEEECC-EEEEeccccCeEEECcEEeCHHH
Confidence            68999999999999999999999999988877665   23369999999999877 99999999999999999999974

This model represents the enzyme (also called D-alanine-D-alanyl carrier protein ligase) which activates D-alanine as an adenylate via the reaction D-ala + ATP - D-ala-AMP + PPi, and further catalyzes the condensation of the amino acid adenylate with the D-alanyl carrier protein (D-ala-ACP). The D-alanine is then further transferred to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram positive bacteria, both polysacchatides.

>PRK05691 peptide synthase; Validated

Probab=100.00  E-value=5.6e-34  Score=287.05  Aligned_cols=227  Identities=23%  Similarity=0.295  Sum_probs=199.2

Q ss_pred             eeeccCCCCcEEEEecChhhHHhHHHHHHHHhhcCcEEEEcC---CCCHHHHHHHHHhcCceEEEeChHHHHHHHhcCCc
Q 026609            5 DQETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA---KFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLV   81 (236)
Q Consensus         5 ~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~---~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~   81 (236)
                      ...+++.++|++++.+|++|..++ ..++.++..|+++++.+   ..++..+++.++++++|++.++|++++.|.+... 
T Consensus      1306 ~~~~~~~~~d~~l~~~~~~fd~s~-~~~~~~L~~G~~l~i~~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~l~~l~~~~~- 1383 (4334)
T PRK05691       1306 QATYALDDSDVLMQKAPISFDVSV-WECFWPLITGCRLVLAGPGEHRDPQRIAELVQQYGVTTLHFVPPLLQLFIDEPL- 1383 (4334)
T ss_pred             HHhcCCCCCCEEEEeCCccHHHHH-HHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHcCCeEEECcHHHHHHHHhCcc-
Confidence            345778899999999999999998 68899999999999986   3689999999999999999999999999987542 


Q ss_pred             CCCCCCCceEEeecCCCCCHHHHHHHHHhCCCCceeeccccccccccccccccCCCCCCCCCCccccCCCcEEEEEeCCC
Q 026609           82 KKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDT  161 (236)
Q Consensus        82 ~~~~l~~lr~i~~~G~~~~~~~~~~~~~~~~~~~v~~~~YG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~  161 (236)
                       ...++++|.+++|||++++++.+.|.+.+++..+++ .||+||++..++.............+|+|++++.++++| +.
T Consensus      1384 -~~~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n-~YG~TE~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d-~~ 1460 (4334)
T PRK05691       1384 -AAACTSLRRLFSGGEALPAELRNRVLQRLPQVQLHN-RYGPTETAINVTHWQCQAEDGERSPIGRPLGNVLCRVLD-AE 1460 (4334)
T ss_pred             -cccCCcccEEEEeecCCCHHHHHHHHHhCCCcEEEe-CCCcChheeeeeeeecccccCCCCcccceeCCCEEEEEC-CC
Confidence             346789999999999999999999999998788888 999999987665433222233456799999999999999 57


Q ss_pred             CCCCCCCCceEEEEecCccchhhcCCcccccccccC-------CCeEecCceEEEcCCCcEEEEcccCCceeeccEEeec
Q 026609          162 QKPLPPNQLGEIWLRGPNMMRGYYNNEQATKLTIDK-------KGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTS  234 (236)
Q Consensus       162 ~~~~~~g~~Gel~v~~~~~~~~~~~~~~~~~~~~~~-------~~~~~TgD~~~~~~~g~~~~~GR~~d~i~~~G~~i~p  234 (236)
                      ++++|.|..|||+|+|+.++.||+++++.+...|..       .+||+|||++++++||.++++||+||+||++|++|.|
T Consensus      1461 ~~~vp~G~~GEL~i~G~~v~~GYl~~p~~t~~~f~~~p~~~~~~r~yrTGDl~~~~~dG~l~~~GR~d~qiki~G~rie~ 1540 (4334)
T PRK05691       1461 LNLLPPGVAGELCIGGAGLARGYLGRPALTAERFVPDPLGEDGARLYRTGDRARWNADGALEYLGRLDQQVKLRGFRVEP 1540 (4334)
T ss_pred             CCCCCCCCceEEEecCcccchhhcCCccccHhhCCCCCCCCCCceEEEccceEEECCCCCEEEecccCcEEEECCEEcCH
Confidence            899999999999999999999999999998887732       3599999999999999999999999999999999998


Q ss_pred             CC
Q 026609          235 NW  236 (236)
Q Consensus       235 ~~  236 (236)
                      .|
T Consensus      1541 ~e 1542 (4334)
T PRK05691       1541 EE 1542 (4334)
T ss_pred             HH
Confidence            75

>PLN02430 long-chain-fatty-acid-CoA ligase

Probab=100.00  E-value=8.8e-34  Score=249.25  Aligned_cols=222  Identities=33%  Similarity=0.441  Sum_probs=180.4

Q ss_pred             cCCCCcEEEEecChhhHHhHHHHHHHHhhcCcEEEEcCCCCHHHHHHHHHhcCceEEEeChHHHHHHHhcCCc-------
Q 026609            9 AGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLV-------   81 (236)
Q Consensus         9 ~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~-------   81 (236)
                      ...++|++++.+|++|.++... ...++..|+++++.+. ++..+++.+++.++|++.++|.+++.+.+....       
T Consensus       262 ~~~~~d~~ls~lPl~H~~~~~~-~~~~l~~G~~i~~~~~-~~~~l~~~l~~~~pt~~~~vP~~~~~l~~~i~~~~~~~~~  339 (660)
T PLN02430        262 KMTHDDVYLSFLPLAHILDRMI-EEYFFRKGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFERIHEGIQKALQELNP  339 (660)
T ss_pred             CCCCCCEEEEeCcHHHHHHHHH-HHHHHHcCCEEEEeCC-ChhhHHHHHHHhCCcEEEecHHHHHHHHHHHHHHHhccCH
Confidence            4567899999999999999854 4567899999988653 778899999999999999999999877652100       


Q ss_pred             ------------------------CCCC-------------C-CCceEEeecCCCCCHHHHHHHHHhCCCCceeeccccc
Q 026609           82 ------------------------KKFD-------------L-SSLKLVGSGAAPLGKELMEECAKNVPSATVIQVGYGL  123 (236)
Q Consensus        82 ------------------------~~~~-------------l-~~lr~i~~~G~~~~~~~~~~~~~~~~~~~v~~~~YG~  123 (236)
                                              ....             + +++|.+++||+++++++.+.++ .++...+++ .||+
T Consensus       340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~l~~~~i~~~~G~~lr~~~~gga~l~~~~~~~~~-~~~~~~i~~-~YG~  417 (660)
T PLN02430        340 RRRLIFNALYKYKLAWMNRGYSHKKASPMADFLAFRKVKAKLGGRLRLLISGGAPLSTEIEEFLR-VTSCAFVVQ-GYGL  417 (660)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHhCCeEEEEEECCCCCCHHHHHHHH-HhcCCCeee-ecch
Confidence                                    0000             1 5799999999999999866554 544467888 9999


Q ss_pred             cccccccccccCCCCCCCCCCccccCCCcEEEEEeC-CCC-CCCCCCCceEEEEecCccchhhcCCcccccccccCCCeE
Q 026609          124 TETSGIATMENSFAGSRNIGSAGALAPGVEALIVSV-DTQ-KPLPPNQLGEIWLRGPNMMRGYYNNEQATKLTIDKKGWV  201 (236)
Q Consensus       124 tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~-~~~-~~~~~g~~Gel~v~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (236)
                      ||++...+...... ...++++|+|.+++++++++. +.+ .+++.+..|||+|+|+.++.||+++++.+...+ .+|||
T Consensus       418 TE~~~~~~~~~~~~-~~~~gsvG~p~~~~evki~d~~~~g~~~~~~~~~GEi~vrg~~v~~GY~~~~e~t~~~~-~dGw~  495 (660)
T PLN02430        418 TETLGPTTLGFPDE-MCMLGTVGAPAVYNELRLEEVPEMGYDPLGEPPRGEICVRGKCLFSGYYKNPELTEEVM-KDGWF  495 (660)
T ss_pred             hhhhhceEeecccc-CCCCCCccCCCCceEEEEEEcCCcCcccCCCCCcceEEecCCCccccccCChHHhhhhh-hccce
Confidence            99987655433221 334678999999999999873 333 556667789999999999999999999998888 68999


Q ss_pred             ecCceEEEcCCCcEEEEcccCCceee-ccEEeecCC
Q 026609          202 HTGDLGYFDGDGQLYVVDRIKELIKY-KGFQVTSNW  236 (236)
Q Consensus       202 ~TgD~~~~~~~g~~~~~GR~~d~i~~-~G~~i~p~~  236 (236)
                      +|||++++++||++++.||++|+||+ +|++|+|+|
T Consensus       496 ~TGDig~~d~dG~l~i~gR~kd~ik~~~G~~V~p~~  531 (660)
T PLN02430        496 HTGDIGEILPNGVLKIIDRKKNLIKLSQGEYVALEY  531 (660)
T ss_pred             eccceEEECCCCcEEEEEcccccEEcCCCcEEchHH
Confidence            99999999999999999999999997 799999974

>PRK08180 feruloyl-CoA synthase; Reviewed

Probab=100.00  E-value=1e-33  Score=247.53  Aligned_cols=212  Identities=26%  Similarity=0.297  Sum_probs=177.2

Q ss_pred             CCcEEEEecChhhHHhHHHHHHHHhhcCcEEEEcCC-CCH---HHHHHHHHhcCceEEEeChHHHHHHHhcCCc----CC
Q 026609           12 LDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK-FDL---EMFLRAIEKHRVTHIWVVPPLILALAKHGLV----KK   83 (236)
Q Consensus        12 ~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~-~~~---~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~----~~   83 (236)
                      ++|++++.+|++|.+|+...++.+++.|+++++.+. +++   ..+++.++++++|.++++|+++..|++....    ..
T Consensus       251 ~~~~~l~~lPl~h~~g~~~~~~~~l~~G~~v~~~~~~~~~~~~~~~l~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~  330 (614)
T PRK08180        251 EPPVLVDWLPWNHTFGGNHNLGIVLYNGGTLYIDDGKPTPGGFDETLRNLREISPTVYFNVPKGWEMLVPALERDAALRR  330 (614)
T ss_pred             CCcEEEEecchHHHhhHHHHHHHHHhcCCEEEEeCCCccchhHHHHHHHHHHhCCcEEechHHHHHHHHHHHHhchhhhh
Confidence            568999999999999987788899999999999763 443   4678889999999999999999998875322    23


Q ss_pred             CCCCCceEEeecCCCCCHHHHHHHHHh----CC-CCceeeccccccccccccccccCCCCCCCCCCccccCCCcEEEEEe
Q 026609           84 FDLSSLKLVGSGAAPLGKELMEECAKN----VP-SATVIQVGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVS  158 (236)
Q Consensus        84 ~~l~~lr~i~~~G~~~~~~~~~~~~~~----~~-~~~v~~~~YG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~  158 (236)
                      ..++++|.+++||+++++++.+.+.+.    ++ ...+++ .||+||++.++......  ....+.+|+|+++++++++|
T Consensus       331 ~~~~~lr~v~~gGa~l~~~~~~~~~~~~~~~~g~~~~l~~-~YG~TE~~~~~~~~~~~--~~~~~svG~p~pg~~v~i~d  407 (614)
T PRK08180        331 RFFSRLKLLFYAGAALSQDVWDRLDRVAEATCGERIRMMT-GLGMTETAPSATFTTGP--LSRAGNIGLPAPGCEVKLVP  407 (614)
T ss_pred             hhccceeEEEEccCCCCHHHHHHHHHHHHhhcCCCceeee-eecccccCCceEecccc--cCCCCcccCccCCcEEEEec
Confidence            357899999999999999999999875    33 256777 99999998766543322  34567899999999999997


Q ss_pred             CCCCCCCCCCCceEEEEecCccchhhcCCcccccccccCCCeEecCceEEE----cCCCcEEEEcccCCceee-ccEEee
Q 026609          159 VDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQATKLTIDKKGWVHTGDLGYF----DGDGQLYVVDRIKELIKY-KGFQVT  233 (236)
Q Consensus       159 ~~~~~~~~~g~~Gel~v~~~~~~~~~~~~~~~~~~~~~~~~~~~TgD~~~~----~~~g~~~~~GR~~d~i~~-~G~~i~  233 (236)
                      +        |..|||+++|+.++.||+++++.+...|+.+|||+|||++++    +++|++++.||++|+|++ +|++|+
T Consensus       408 ~--------~~~GEi~vrg~~v~~GY~~~p~~t~~~~~~dgw~~TGDlg~~~~~~d~~g~l~i~GR~~d~i~~~~G~~i~  479 (614)
T PRK08180        408 V--------GGKLEVRVKGPNVTPGYWRAPELTAEAFDEEGYYRSGDAVRFVDPADPERGLMFDGRIAEDFKLSSGTWVS  479 (614)
T ss_pred             C--------CCCcEEEEecCccchhhcCChhHhHhhcccCCceeccceEEecCCcCCCCceEEecchhhhEEcCCCcEec
Confidence            3        345999999999999999999999888877899999999999    468999999999998886 798877


Q ss_pred             c
Q 026609          234 S  234 (236)
Q Consensus       234 p  234 (236)
                      |
T Consensus       480 ~  480 (614)
T PRK08180        480 V  480 (614)
T ss_pred             c
Confidence            4

>PRK08276 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=1.6e-33  Score=240.97  Aligned_cols=220  Identities=29%  Similarity=0.451  Sum_probs=192.9

Q ss_pred             CCCcEEEEecChhhHHhHHHHHHHHhhcCcEEEEcCCCCHHHHHHHHHhcCceEEEeChHHHHHHHhcCCc--CCCCCCC
Q 026609           11 ELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLV--KKFDLSS   88 (236)
Q Consensus        11 ~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~--~~~~l~~   88 (236)
                      ..++++++.+|++|.+++ ...+.++..|+++++.+.+++..+++.++++++|.+.++|+++..+++..+.  ...++++
T Consensus       185 ~~~~~~l~~~p~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~  263 (502)
T PRK08276        185 GPDSVYLSPAPLYHTAPL-RFGMSALALGGTVVVMEKFDAEEALALIERYRVTHSQLVPTMFVRMLKLPEEVRARYDVSS  263 (502)
T ss_pred             CCCCEEEEcCcHHHHHHH-HHHHHHHhccceEEEcCCCCHHHHHHHHHHhCCeEEEehHHHHHHHHhCccccCCCCCccc
Confidence            467899999999999998 4555789999999999889999999999999999999999999999876542  3346789


Q ss_pred             ceEEeecCCCCCHHHHHHHHHhCCCCceeeccccccccccccccccCCCCCCCCCCccccCCCcEEEEEeCCCCCCCCCC
Q 026609           89 LKLVGSGAAPLGKELMEECAKNVPSATVIQVGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPN  168 (236)
Q Consensus        89 lr~i~~~G~~~~~~~~~~~~~~~~~~~v~~~~YG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~g  168 (236)
                      +|.++++|+++++++.+++.+.++ ..+.+ .||+||++.++..... ......+.+|+|+ ++.++++| +++++++.|
T Consensus       264 lr~i~~~g~~~~~~~~~~~~~~~~-~~~~~-~yG~tE~~~~~~~~~~-~~~~~~~~~G~~~-~~~~~i~d-~~~~~~~~g  338 (502)
T PRK08276        264 LRVAIHAAAPCPVEVKRAMIDWWG-PIIHE-YYASSEGGGVTVITSE-DWLAHPGSVGKAV-LGEVRILD-EDGNELPPG  338 (502)
T ss_pred             ceEEEecCCCCCHHHHHHHHHHhC-cHhhh-hcccccccceeEecCc-cccccCCCcceec-ccEEEEEC-CCCCCCcCC
Confidence            999999999999999999999886 66777 9999999886654322 2234456889999 88999998 568999999


Q ss_pred             CceEEEEecCccchhhcCCcccccccccCCCeEecCceEEEcCCCcEEEEcccCCceeeccEEeecCC
Q 026609          169 QLGEIWLRGPNMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSNW  236 (236)
Q Consensus       169 ~~Gel~v~~~~~~~~~~~~~~~~~~~~~~~~~~~TgD~~~~~~~g~~~~~GR~~d~i~~~G~~i~p~~  236 (236)
                      +.|||+++++.++.+|+++++.+...+..++||+|||+++++++|.+++.||.||++|++|.+|+|+|
T Consensus       339 ~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~~~~~GR~~~~i~~~G~~v~~~~  406 (502)
T PRK08276        339 EIGTVYFEMDGYPFEYHNDPEKTAAARNPHGWVTVGDVGYLDEDGYLYLTDRKSDMIISGGVNIYPQE  406 (502)
T ss_pred             CceEEEEECCCccchhcCCHHHHHHHhcCCCceeecceEEEcCCcCEEEeccCcceEEeCCEEeCHHH
Confidence            99999999999999999999999888877799999999999999999999999999999999999864

>PRK08751 putative long-chain fatty acyl CoA ligase; Provisional

Probab=100.00  E-value=2e-33  Score=243.44  Aligned_cols=220  Identities=31%  Similarity=0.517  Sum_probs=191.2

Q ss_pred             CcEEEEecChhhHHhHHHHHHHHhhcCcEEEEcC-CCCHHHHHHHHHhcCceEEEeChHHHHHHHhcCCcCCCCCCCceE
Q 026609           13 DYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSSLKL   91 (236)
Q Consensus        13 ~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~   91 (236)
                      +++++..+|++|.+++....+.++..|++.++.+ .+++..+++.++++++|.+.++|+.+..+.+.......+++++|.
T Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~l~~lr~  333 (560)
T PRK08751        254 CEVVITALPLYHIFALTANGLVFMKIGGCNHLISNPRDMPGFVKELKKTRFTAFTGVNTLFNGLLNTPGFDQIDFSSLKM  333 (560)
T ss_pred             CceEEEecChHHHHHHHHhhhhHhhccceEEEecCcCCHHHHHHHHHhcceeEecChHHHHHHHHcCcCcCCcchhhhee
Confidence            4678889999999998666667777777766654 578999999999999999999999999998876555567889999


Q ss_pred             EeecCCCCCHHHHHHHHHhCCCCceeeccccccccccccccccCCCCCCCCCCccccCCCcEEEEEeCCCCCCCCCCCce
Q 026609           92 VGSGAAPLGKELMEECAKNVPSATVIQVGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLG  171 (236)
Q Consensus        92 i~~~G~~~~~~~~~~~~~~~~~~~v~~~~YG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~g~~G  171 (236)
                      ++++|+++++++.+.|++.++ ..+++ .||+||++..+...... .....+.+|.|.+++.++++| +++++++.|+.|
T Consensus       334 v~~gG~~~~~~~~~~~~~~~~-~~~~~-~YG~tE~~~~~~~~~~~-~~~~~~~vG~~~~~~~v~i~d-~~~~~~~~g~~G  409 (560)
T PRK08751        334 TLGGGMAVQRSVAERWKQVTG-LTLVE-AYGLTETSPAACINPLT-LKEYNGSIGLPIPSTDACIKD-DAGTVLAIGEIG  409 (560)
T ss_pred             eeeCCCCCCHHHHHHHHHHhC-CeEEE-eeccccCCCceeccccc-ccccCCCcCccCCCceEEEEC-CCCCCCCCCCce
Confidence            999999999999999999886 78888 99999998766543321 123456789999999999999 688999999999


Q ss_pred             EEEEecCccchhhcCCcccccccccCCCeEecCceEEEcCCCcEEEEcccCCceeeccEEeecCC
Q 026609          172 EIWLRGPNMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSNW  236 (236)
Q Consensus       172 el~v~~~~~~~~~~~~~~~~~~~~~~~~~~~TgD~~~~~~~g~~~~~GR~~d~i~~~G~~i~p~~  236 (236)
                      ||+++++.++.+|+++++.+...+..+|||+|||+++++++|.+++.||.||+|+++|++|+|.|
T Consensus       410 el~v~~~~~~~gy~~~~~~~~~~~~~~g~~~TGD~~~~~~~g~l~i~GR~~d~i~~~G~~v~p~e  474 (560)
T PRK08751        410 ELCIKGPQVMKGYWKRPEETAKVMDADGWLHTGDIARMDEQGFVYIVDRKKDMILVSGFNVYPNE  474 (560)
T ss_pred             EEEEecCccchhhcCChhhhhhccccCCCccccceEEEcCCceEEEEeechhheeECCEEEcHHH
Confidence            99999999999999999998888877899999999999999999999999999999999999864

>PRK03584 acetoacetyl-CoA synthetase; Provisional

Probab=100.00  E-value=2.1e-33  Score=247.29  Aligned_cols=225  Identities=17%  Similarity=0.163  Sum_probs=185.2

Q ss_pred             eeccCCCCcEEEEecChhhHHhHHHHHHHHhhcCcEEEEcCC----CCHHHHHHHHHhcCceEEEeChHHHHHHHhcCC-
Q 026609            6 QETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK----FDLEMFLRAIEKHRVTHIWVVPPLILALAKHGL-   80 (236)
Q Consensus         6 ~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~-   80 (236)
                      ..+++.++|++++..++.|..+.  .+++++..|+++++.+.    +++..+++.++++++|.+..+|++++.+.+... 
T Consensus       298 ~~~~~~~~d~~~~~~~~~~~~~~--~~~~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~  375 (655)
T PRK03584        298 LHCDLGPGDRFFWYTTCGWMMWN--WLVSGLLVGATLVLYDGSPFYPDPNVLWDLAAEEGVTVFGTSAKYLDACEKAGLV  375 (655)
T ss_pred             HhcCCCCCCEEEEcCCchHHhHH--HHHHHHHcCCEEEEeCCCCCCCCHHHHHHHHHHHCCEEEEcCHHHHHHHHhcCCC
Confidence            45678889999999999998654  45689999999999752    579999999999999999999999999877532 


Q ss_pred             -cCCCCCCCceEEeecCCCCCHHHHHHHHHhCC-CCceeeccccccccccccccccCCCCCCCCCCccccCCCcEEEEEe
Q 026609           81 -VKKFDLSSLKLVGSGAAPLGKELMEECAKNVP-SATVIQVGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVS  158 (236)
Q Consensus        81 -~~~~~l~~lr~i~~~G~~~~~~~~~~~~~~~~-~~~v~~~~YG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~  158 (236)
                       ....+++++|.++++|+++++++.+++.+.++ +..+.+ .||+||++........ .....++.+|.|.++++++++|
T Consensus       376 ~~~~~~l~sLr~i~~~Ge~l~~~~~~~~~~~~~~~~~~~~-~yG~TE~~~~~~~~~~-~~~~~~g~~g~p~~g~~~~ivd  453 (655)
T PRK03584        376 PGETHDLSALRTIGSTGSPLPPEGFDWVYEHVKADVWLAS-ISGGTDICSCFVGGNP-LLPVYRGEIQCRGLGMAVEAWD  453 (655)
T ss_pred             ccccCChhheEEEEEecCCCCHHHHHHHHHHhCCCceEEe-ccChHhhhcccccCCC-CCCcCCCccCCCcCCceeEEEC
Confidence             23457889999999999999999999999984 466777 9999998644332211 1134457789999999999999


Q ss_pred             CCCCCCCCCCCceEEEEecC--ccchhhcCCccccc--ccc--cCCCeEecCceEEEcCCCcEEEEcccCCceeeccEEe
Q 026609          159 VDTQKPLPPNQLGEIWLRGP--NMMRGYYNNEQATK--LTI--DKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV  232 (236)
Q Consensus       159 ~~~~~~~~~g~~Gel~v~~~--~~~~~~~~~~~~~~--~~~--~~~~~~~TgD~~~~~~~g~~~~~GR~~d~i~~~G~~i  232 (236)
                       ++++++ .|+.|||+++++  +++.+|+++++.+.  ..+  ..++||+|||++++|+||.+++.||.||+||++|++|
T Consensus       454 -~~g~~~-~g~~GeL~v~gp~p~~~~gy~~~~~~~~~~~~~~~~~~g~~~TGDl~~~d~dG~l~i~GR~dd~Ik~~G~rI  531 (655)
T PRK03584        454 -EDGRPV-VGEVGELVCTKPFPSMPLGFWNDPDGSRYRDAYFDTFPGVWRHGDWIEITEHGGVVIYGRSDATLNRGGVRI  531 (655)
T ss_pred             -CCCCCC-CCCceEEEEccCCCCCcceeeCCCccchHHHhhhccCCCEeecCCeEEECCCCeEEEEeeccCeeecCcEEE
Confidence             567888 799999999995  78899999887432  111  1257899999999999999999999999999999999


Q ss_pred             ecCC
Q 026609          233 TSNW  236 (236)
Q Consensus       233 ~p~~  236 (236)
                      +|.|
T Consensus       532 ~p~E  535 (655)
T PRK03584        532 GTAE  535 (655)
T ss_pred             CHHH
Confidence            9975

>KOG1256 consensus Long-chain acyl-CoA synthetases (AMP-forming) [Lipid transport and metabolism]

Probab=100.00  E-value=8.6e-34  Score=239.11  Aligned_cols=217  Identities=33%  Similarity=0.493  Sum_probs=187.0

Q ss_pred             CcEEEEecChhhHHhHHHHHHHHhhcCcEEEEcCCCCHHHHHHHHHhcCceEEEeChHHHHHHHhcC-------------
Q 026609           13 DYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHG-------------   79 (236)
Q Consensus        13 ~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~-------------   79 (236)
                      +|++++.+|+.|++..... ...++.|+++.+.. .|+..+.+.+++.++|.+.++|.+++.+-+..             
T Consensus       302 ~dv~lSyLPLAHi~er~~~-~~~~~~G~~IgF~~-gD~~~l~~dlk~lkPT~f~~VPRVl~riye~I~~~~~~sgflkr~  379 (691)
T KOG1256|consen  302 DDVYLSYLPLAHIFERVVE-LYTFYIGAKIGFAR-GDILKLTDDLKELKPTVFPGVPRVLERIYEGIQKQVQKSGFLKRK  379 (691)
T ss_pred             CceEEEeCcHHHHHHHHHH-HhHhhcccEEEEec-CChHHHHHHHHHhCCcEEeccHhHHHHHHHHHHHHHhcchHHHHH
Confidence            6999999999999999544 45568899999987 48888888899999999999999887553310             


Q ss_pred             ---------C----cCCCCC-------------------CCceEEeecCCCCCHHHHHHHHHhCCCCceeeccccccccc
Q 026609           80 ---------L----VKKFDL-------------------SSLKLVGSGAAPLGKELMEECAKNVPSATVIQVGYGLTETS  127 (236)
Q Consensus        80 ---------~----~~~~~l-------------------~~lr~i~~~G~~~~~~~~~~~~~~~~~~~v~~~~YG~tE~g  127 (236)
                               .    ......                   ..+|.+++|++|+++++.+.++..++ +.+++ .||+||+.
T Consensus       380 l~~~A~~~k~~~~~~~G~~~~~~~~~D~lVf~KI~~~LGg~vr~~~sGaAPls~ev~~F~r~~~g-~~v~e-GYGlTEts  457 (691)
T KOG1256|consen  380 LFNFAMAYKLEHRLMKGKSRSRDRFADKLVFHKIKQSLGGNVRLIISGAAPLSPEVLTFFRAALG-CRVLE-GYGLTETS  457 (691)
T ss_pred             HHHHHHHHHHHHHhhCCCCcccchHHHHHHHHHHHHHhcCceeEEEecCCCCCHHHHHHHHHhcC-ceeee-cccccccC
Confidence                     0    001111                   27899999999999999999999986 89999 99999998


Q ss_pred             cccccccCCCCCCCCCCccccCCCcEEEEEeCCCCCCCCCCCceEEEEecCccchhhcCCcccccccccCCCeEecCceE
Q 026609          128 GIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQATKLTIDKKGWVHTGDLG  207 (236)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~g~~Gel~v~~~~~~~~~~~~~~~~~~~~~~~~~~~TgD~~  207 (236)
                      +.++.....  +...+++|.|+|+.+++++|+.+.+.-+.|..|||||+|+.++.||+.||+.|.+.++.+||++|||+|
T Consensus       458 ~g~~~~~~~--d~~lgsvG~p~p~~~vKL~dvpe~ny~a~~~~GEIcirG~~Vf~GYyK~p~~T~e~ideDGWLhTGDiG  535 (691)
T KOG1256|consen  458 AGTTLTLPG--DNVLGSVGPPVPGNEVKLVDVPEMNYDADGSKGEICVRGPNVFMGYYKDPEKTAEAIDEDGWLHTGDIG  535 (691)
T ss_pred             CceEeccCC--CCCCCCcCCcccCceEEEechHHhCcCcCCCcceEEEecchhceeccCChHHHhhhhccccccccccce
Confidence            555554443  236789999999999999998888888888899999999999999999999999999999999999999


Q ss_pred             EEcCCCcEEEEcccCCceee-ccEEeecC
Q 026609          208 YFDGDGQLYVVDRIKELIKY-KGFQVTSN  235 (236)
Q Consensus       208 ~~~~~g~~~~~GR~~d~i~~-~G~~i~p~  235 (236)
                      +++++|.+.++||+++++|+ .|++|.|+
T Consensus       536 ~~~p~G~l~IidRkK~ifklaqGEyVaPe  564 (691)
T KOG1256|consen  536 EWDPNGTLKIIDRKKNIFKLAQGEYVAPE  564 (691)
T ss_pred             eECCCccEEEEecccceEEcCCCCccChH
Confidence            99999999999999999999 89999986

>PRK07867 acyl-CoA synthetase; Validated

Probab=100.00  E-value=4e-33  Score=239.92  Aligned_cols=221  Identities=26%  Similarity=0.351  Sum_probs=187.0

Q ss_pred             eeeccCCCCcEEEEecChhhHHhHHHHHHHHhhcCcEEEEcCCCCHHHHHHHHHhcCceEEEeChHHHHHHHhcCCcCCC
Q 026609            5 DQETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKF   84 (236)
Q Consensus         5 ~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~   84 (236)
                      ...+++.++|++++.+|++|..++...++.++..|+++++.+++++..+++.++++++|.+.++|+.+..++...+....
T Consensus       185 ~~~~~~~~~d~~l~~~pl~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~vt~~~~~p~~~~~ll~~~~~~~~  264 (529)
T PRK07867        185 AQRFGLGPDDVCYVSMPLFHSNAVMAGWAVALAAGASIALRRKFSASGFLPDVRRYGATYANYVGKPLSYVLATPERPDD  264 (529)
T ss_pred             HHhhCCCcccEEEEecchhHHHHHHHHHHHHHhcCceEEecCCCCHHHHHHHHHHhCCeEEeccHHHHHHHHhCCCcccc
Confidence            34567788999999999999999977788899999999999889999999999999999999999999998876543333


Q ss_pred             CCCCceEEeecCCCCCHHHHHHHHHhCCCCceeeccccccccccccccccCCCCCCCCCCccccCCCcEEEEEeCCCCCC
Q 026609           85 DLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKP  164 (236)
Q Consensus        85 ~l~~lr~i~~~G~~~~~~~~~~~~~~~~~~~v~~~~YG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~  164 (236)
                      ..+++|. +.||+.+++.. +.|.+.++ ..+++ .||+||++..+....    ....+.+|.|.++  +++++++++++
T Consensus       265 ~~~~lr~-~~gg~~~~~~~-~~~~~~~g-~~l~~-~YG~TE~~~~~~~~~----~~~~~~~g~~~~~--~~i~~~~~~~~  334 (529)
T PRK07867        265 ADNPLRI-VYGNEGAPGDI-ARFARRFG-CVVVD-GFGSTEGGVAITRTP----DTPPGALGPLPPG--VAIVDPDTGTE  334 (529)
T ss_pred             cccceEE-EecCCCChHHH-HHHHHHhC-CcEEE-eecccccccccccCC----CCCCCCcCCCCCC--EEEEECCCCCC
Confidence            3457774 55788887664 67777886 88888 999999986654321    2234578999998  67788778888


Q ss_pred             CCCCC------------ceEEEE-ecCccchhhcCCcccccccccCCCeEecCceEEEcCCCcEEEEcccCCceeeccEE
Q 026609          165 LPPNQ------------LGEIWL-RGPNMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQ  231 (236)
Q Consensus       165 ~~~g~------------~Gel~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~TgD~~~~~~~g~~~~~GR~~d~i~~~G~~  231 (236)
                      ++.|+            .|||++ ++++++.+|+++++.+...+ .+|||+|||+++++++|.+++.||.||+|+++|++
T Consensus       335 ~~~g~~~~~~~~~~~~~~Gel~i~~g~~~~~gy~~~~~~~~~~~-~~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~  413 (529)
T PRK07867        335 CPPAEDADGRLLNADEAIGELVNTAGPGGFEGYYNDPEADAERM-RGGVYWSGDLAYRDADGYAYFAGRLGDWMRVDGEN  413 (529)
T ss_pred             CCCCccccccccccCCcceEEEEecCCcccccccCChHhhhhhh-cCCeEeeccEEEEeCCCcEEEeccccCeEEECCEE
Confidence            99888            899998 99999999999999887777 68999999999999999999999999999999999


Q ss_pred             eecCC
Q 026609          232 VTSNW  236 (236)
Q Consensus       232 i~p~~  236 (236)
                      |+|.|
T Consensus       414 v~p~e  418 (529)
T PRK07867        414 LGTAP  418 (529)
T ss_pred             eCHHH
Confidence            99865

>PLN03052 acetate--CoA ligase; Provisional

Probab=100.00  E-value=4.5e-33  Score=246.52  Aligned_cols=224  Identities=17%  Similarity=0.153  Sum_probs=182.9

Q ss_pred             ccCCCCcEEEEecChhhHHhHHHHHHHHhhcCcEEEEcCC-CCHHHHHHHHHhcCceEEEeChHHHHHHHhcCCcCCCCC
Q 026609            8 TAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK-FDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDL   86 (236)
Q Consensus         8 ~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l   86 (236)
                      ++++++|++++.+|++|+++. ..++++|..|++++++++ +++..++++++++++|++..+|++++.|.+.......++
T Consensus       392 ~~l~~~d~~~~~~~l~w~~g~-~~v~~~L~~Gat~vl~~g~p~~~~~~~~i~~~~vT~l~~~Pt~l~~l~~~~~~~~~dl  470 (728)
T PLN03052        392 LDIRKGDIVCWPTNLGWMMGP-WLVYASLLNGATLALYNGSPLGRGFAKFVQDAKVTMLGTVPSIVKTWKNTNCMAGLDW  470 (728)
T ss_pred             cCCCCCcEEEECCCcHHHhHH-HHHHHHHHhCCEEEEeCCCCCCChHHHHHHHHCCCEEEECHHHHHHHHhcCCcccCCh
Confidence            577889999999999999998 678899999999999874 566789999999999999999999999988764456688


Q ss_pred             CCceEEeecCCCCCHHHHHHHHHhCCCCceeeccccccccccccccccCCCCCCCCCCccccCCCcEEEEEeCCCCCCCC
Q 026609           87 SSLKLVGSGAAPLGKELMEECAKNVPSATVIQVGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLP  166 (236)
Q Consensus        87 ~~lr~i~~~G~~~~~~~~~~~~~~~~~~~v~~~~YG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~  166 (236)
                      +++|.++++|++++++...++.+.++...+.+ .||+||++......... ....++.+|.|.+|++++++| ++|++++
T Consensus       471 ssLr~i~s~Ge~l~~~~~~~~~~~~~~~~i~~-~yG~TE~~~~~~~~~~~-~~~~~g~~g~p~~g~~v~v~d-~~g~~v~  547 (728)
T PLN03052        471 SSIRCFGSTGEASSVDDYLWLMSRAGYKPIIE-YCGGTELGGGFVTGSLL-QPQAFAAFSTPAMGCKLFILD-DSGNPYP  547 (728)
T ss_pred             hheeEEEecCCCCCHHHHHHHHHhcCCCCeEe-eccChhhCcccccCCCC-CCCCCCccccCCCCceEEEEC-CCCCCCC
Confidence            99999999999999999888888776456777 99999997654432221 133457789999999999999 6899999


Q ss_pred             CCC--ceEEEEecCc--cchhhcCCccccccccc------CCCeEecCceEEEcCCCcEEEEcccCCceeeccEEeecCC
Q 026609          167 PNQ--LGEIWLRGPN--MMRGYYNNEQATKLTID------KKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSNW  236 (236)
Q Consensus       167 ~g~--~Gel~v~~~~--~~~~~~~~~~~~~~~~~------~~~~~~TgD~~~~~~~g~~~~~GR~~d~i~~~G~~i~p~~  236 (236)
                      .|+  .|||+++++.  ...+|+++. .....|.      ...||+|||+++++++|++++.||.||+||++|+||+|.|
T Consensus       548 ~g~~~~GEL~v~~~~~~~~~~~~~~~-~~~~yf~~~p~~~g~~~~~tGDl~~~d~dG~l~i~GR~Dd~I~~~G~rI~~~E  626 (728)
T PLN03052        548 DDAPCTGELALFPLMFGASSTLLNAD-HYKVYFKGMPVFNGKILRRHGDIFERTSGGYYRAHGRADDTMNLGGIKVSSVE  626 (728)
T ss_pred             CCCCceEEEEEeCCCCCCCccccCch-hhhhhhhcCCCCCCCEEEecCceEEECCCCeEEEEecCCCEEeeCCEEeCHHH
Confidence            986  5999997642  223455542 2222221      2238999999999999999999999999999999999976

>PRK12582 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=2.5e-33  Score=245.55  Aligned_cols=213  Identities=25%  Similarity=0.280  Sum_probs=176.7

Q ss_pred             CcEEEEecChhhHHhHHHHHHHHhhcCcEEEEcCC-CCH---HHHHHHHHhcCceEEEeChHHHHHHHhcCCcC----CC
Q 026609           13 DYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK-FDL---EMFLRAIEKHRVTHIWVVPPLILALAKHGLVK----KF   84 (236)
Q Consensus        13 ~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~-~~~---~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~----~~   84 (236)
                      .+++++++|++|.+|+...++.++..|+++++.++ +++   ..+++.++++++|.++++|+++..|++.....    ..
T Consensus       264 ~~~~l~~lPl~h~~g~~~~~~~~l~~G~tvvl~~~~~~~~~~~~~~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~  343 (624)
T PRK12582        264 PPVSLDWMPWNHTMGGNANFNGLLWGGGTLYIDDGKPLPGMFEETIRNLREISPTVYGNVPAGYAMLAEAMEKDDALRRS  343 (624)
T ss_pred             CceEEEechHHHHHhHHHHHHHHHhCceEEEEcCCCcccchHHHHHHHHHhcCCeEEeccCHHHHHHHHHHhhCHHHHHH
Confidence            58999999999999987778889999999999763 333   35677789999999999999999887643222    12


Q ss_pred             CCCCceEEeecCCCCCHHHHHHHHHhC----C-CCceeeccccccccccccccccCCCCCCCCCCccccCCCcEEEEEeC
Q 026609           85 DLSSLKLVGSGAAPLGKELMEECAKNV----P-SATVIQVGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSV  159 (236)
Q Consensus        85 ~l~~lr~i~~~G~~~~~~~~~~~~~~~----~-~~~v~~~~YG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~  159 (236)
                      .++++|.+++||+++++++.++|.+.+    + +..+++ .||+||++.++......  ....+.+|+|++++++++++ 
T Consensus       344 ~~~slr~i~~gGa~l~~~~~~~~~~~~~~~~g~~~~l~~-~YG~TE~~~~~~~~~~~--~~~~~svG~p~pg~~v~i~~-  419 (624)
T PRK12582        344 FFKNLRLMAYGGATLSDDLYERMQALAVRTTGHRIPFYT-GYGATETAPTTTGTHWD--TERVGLIGLPLPGVELKLAP-  419 (624)
T ss_pred             HhhheeEEEecCCCCCHHHHHHHHHHHHhhcCCCceEEe-ccccccccceeecccCC--CCCCCCCCcCCCCcEEEEcc-
Confidence            467999999999999999999998863    3 256787 99999998766532221  34567899999999999864 


Q ss_pred             CCCCCCCCCCceEEEEecCccchhhcCCcccccccccCCCeEecCceEEE-c---CCCcEEEEcccCCceee-ccEEeec
Q 026609          160 DTQKPLPPNQLGEIWLRGPNMMRGYYNNEQATKLTIDKKGWVHTGDLGYF-D---GDGQLYVVDRIKELIKY-KGFQVTS  234 (236)
Q Consensus       160 ~~~~~~~~g~~Gel~v~~~~~~~~~~~~~~~~~~~~~~~~~~~TgD~~~~-~---~~g~~~~~GR~~d~i~~-~G~~i~p  234 (236)
                             .|+.|||+++|+.++.+|+++++.+...|..+|||+|||++++ +   ++|++++.||+||+|++ +|++|+|
T Consensus       420 -------~G~~GEl~vrg~~v~~GY~~~p~~t~~~f~~dgw~~TGDlg~~~d~~~~~g~l~i~GR~~d~i~~~~G~~i~p  492 (624)
T PRK12582        420 -------VGDKYEVRVKGPNVTPGYHKDPELTAAAFDEEGFYRLGDAARFVDPDDPEKGLIFDGRVAEDFKLSTGTWVSV  492 (624)
T ss_pred             -------CCCceEEEEECCcccccccCCccchhhhcCccCCccccceEEecCCcCCCCceEEeccchhhEecCCCcEech
Confidence                   4778999999999999999999999888877899999999998 4   46899999999999996 7999998


Q ss_pred             CC
Q 026609          235 NW  236 (236)
Q Consensus       235 ~~  236 (236)
                      .|
T Consensus       493 ~~  494 (624)
T PRK12582        493 GT  494 (624)
T ss_pred             HH
Confidence            63

>PRK08974 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=1.1e-32  Score=238.86  Aligned_cols=221  Identities=32%  Similarity=0.513  Sum_probs=193.2

Q ss_pred             CCCcEEEEecChhhHHhHHHHHHHHhhcCcEEEEcC-CCCHHHHHHHHHhcCceEEEeChHHHHHHHhcCCcCCCCCCCc
Q 026609           11 ELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSSL   89 (236)
Q Consensus        11 ~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~l   89 (236)
                      ..+++++..+|++|.+++....+.++..|+++++.. ..++..+++.++++++|.+.++|++++.|.+........++++
T Consensus       248 ~~~~~~~~~~p~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~l  327 (560)
T PRK08974        248 PGKELVVTALPLYHIFALTVNCLLFIELGGQNLLITNPRDIPGFVKELKKYPFTAITGVNTLFNALLNNEEFQELDFSSL  327 (560)
T ss_pred             CCccEEEEeCcHHHHHHHHHHHHHHhhcCCeEEEecCccCHHHHHHHHHhcCcceEcCcHHHHHHHHhCcCcccCCccce
Confidence            446788999999999998777788888898877754 5678899999999999999999999999988765555677899


Q ss_pred             eEEeecCCCCCHHHHHHHHHhCCCCceeeccccccccccccccccCCCCCCCCCCccccCCCcEEEEEeCCCCCCCCCCC
Q 026609           90 KLVGSGAAPLGKELMEECAKNVPSATVIQVGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQ  169 (236)
Q Consensus        90 r~i~~~G~~~~~~~~~~~~~~~~~~~v~~~~YG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~g~  169 (236)
                      |.++.+|+++++.+.+.|++.++ ..+.+ .||+||++.+...+... .......+|.|++++.++++|+ ++++++.|+
T Consensus       328 r~~~~gg~~~~~~~~~~~~~~~g-~~~~~-~YG~tE~~~~~~~~~~~-~~~~~~~~G~~~~~~~~~i~~~-~~~~~~~g~  403 (560)
T PRK08974        328 KLSVGGGMAVQQAVAERWVKLTG-QYLLE-GYGLTECSPLVSVNPYD-LDYYSGSIGLPVPSTEIKLVDD-DGNEVPPGE  403 (560)
T ss_pred             eEEEecCccCCHHHHHHHHHHhC-CcEEe-eecccccCceeeccCCC-CcccCCccccCcCCCEEEEECC-CCCCCCCCC
Confidence            99999999999999999999886 78888 99999998776654332 2344567999999999999994 789999999


Q ss_pred             ceEEEEecCccchhhcCCcccccccccCCCeEecCceEEEcCCCcEEEEcccCCceeeccEEeecCC
Q 026609          170 LGEIWLRGPNMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSNW  236 (236)
Q Consensus       170 ~Gel~v~~~~~~~~~~~~~~~~~~~~~~~~~~~TgD~~~~~~~g~~~~~GR~~d~i~~~G~~i~p~~  236 (236)
                      .|||+++++.++.+|+++++.+...+ .+|||+|||+++++++|.+++.||.||+|+++|.+|+|.|
T Consensus       404 ~Gel~v~g~~~~~gy~~~~~~~~~~~-~~g~~~TGDl~~~~~~g~l~i~GR~~d~i~~~G~~i~~~~  469 (560)
T PRK08974        404 PGELWVKGPQVMLGYWQRPEATDEVI-KDGWLATGDIAVMDEEGFLRIVDRKKDMILVSGFNVYPNE  469 (560)
T ss_pred             ceEEEEecCCcchhhcCChhhhhhhh-hcCCcccCCEEEEcCCceEEEEecccceEEeCCEEECHHH
Confidence            99999999999999999988887777 6899999999999999999999999999999999999864

>TIGR01217 ac_ac_CoA_syn acetoacetyl-CoA synthase

Probab=100.00  E-value=5.7e-33  Score=244.10  Aligned_cols=224  Identities=17%  Similarity=0.162  Sum_probs=179.3

Q ss_pred             eccCCCCcEEEEecChhhHHhHHHHHHHHhhcCcEEEEcCC----CCHHHHHHHHHhcCceEEEeChHHHHHHHhcC--C
Q 026609            7 ETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK----FDLEMFLRAIEKHRVTHIWVVPPLILALAKHG--L   80 (236)
Q Consensus         7 ~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~--~   80 (236)
                      .+++.++|++++.+|+.|..+.  .+++++..|+++++.+.    .++..++++++++++|.+...|++++.+.+..  .
T Consensus       300 ~~~~~~~d~~~~~~~~~~~~~~--~~~~~l~~G~t~vl~~g~~~~~~~~~~~~~i~~~~vt~~~~~p~~~~~l~~~~~~~  377 (652)
T TIGR01217       300 HCDLGPGDRLFYYTTTGWMMWN--WLVSGLATGATLVLYDGSPGFPATNVLWDIAERTGATLFGTSAKYVMACRKAGVHP  377 (652)
T ss_pred             ccCCCCCcEEEEeCCcchhhhH--HHHHHHhcCcEEEEECCCCCCCCchHHHHHHHHhCCeEEecCHHHHHHHHhcCCCc
Confidence            4678899999999999998643  35589999999999852    36889999999999999988887777765532  1


Q ss_pred             cCCCCCCCceEEeecCCCCCHHHHHHHHHhCCC-CceeeccccccccccccccccCCCCCCCCCCccccCCCcEEEEEeC
Q 026609           81 VKKFDLSSLKLVGSGAAPLGKELMEECAKNVPS-ATVIQVGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSV  159 (236)
Q Consensus        81 ~~~~~l~~lr~i~~~G~~~~~~~~~~~~~~~~~-~~v~~~~YG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~  159 (236)
                      ....+++++|.++++|+++++++.+++.+.++. ..+.+ .||+||++......... .....+.+|.|.++++++++| 
T Consensus       378 ~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~~~~~~~~~-~yG~TE~~~~~~~~~~~-~~~~~g~~g~p~~g~~v~ivd-  454 (652)
T TIGR01217       378 ARTHDLSALQCVASTGSPLPPDGFRWVYDEIKADVWLAS-ISGGTDICSCFAGANPT-LPVHIGEIQAPGLGTAVQSWD-  454 (652)
T ss_pred             cccCChhheeEEEeecCCCCHHHHHHHHHHhCCCceEEe-ccCHHHHhccccCCCCC-CCCcCCccCCCcCCCceEEEC-
Confidence            234578999999999999999999999998863 33445 89999975433322111 133456788999999999999 


Q ss_pred             CCCCCCCCCCceEEEEecC--ccchhhcCCccccc--cc-c-cCCCeEecCceEEEcCCCcEEEEcccCCceeeccEEee
Q 026609          160 DTQKPLPPNQLGEIWLRGP--NMMRGYYNNEQATK--LT-I-DKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVT  233 (236)
Q Consensus       160 ~~~~~~~~g~~Gel~v~~~--~~~~~~~~~~~~~~--~~-~-~~~~~~~TgD~~~~~~~g~~~~~GR~~d~i~~~G~~i~  233 (236)
                      ++|+++ .|+.|||+++++  +++.+||++++.+.  .. + ..+|||+|||++++|+||++++.||+||+||++|++|+
T Consensus       455 ~~g~~~-~g~~GEl~v~gp~p~~~~gy~~~~~~t~~~~~~~~~~~g~~~tGDlg~~d~dG~l~i~GR~dd~I~~~G~ri~  533 (652)
T TIGR01217       455 PEGKPV-TGEVGELVCTNPMPSMPIRFWNDPDGSKYRDAYFDTYPGVWRHGDWITLTPRGGIVIHGRSDSTLNPQGVRMG  533 (652)
T ss_pred             CCCCCC-CCCccEEEEecCCCccccceeCCCccchhHHhhhcCCCCEEEcCCcEEECCCCcEEEEecccCeEecCCEEcC
Confidence            577777 599999999996  68899999987543  12 2 12689999999999999999999999999999999999


Q ss_pred             cCC
Q 026609          234 SNW  236 (236)
Q Consensus       234 p~~  236 (236)
                      |.|
T Consensus       534 p~E  536 (652)
T TIGR01217       534 SAE  536 (652)
T ss_pred             HHH
Confidence            975

This enzyme catalyzes the first step of the mevalonate pathway of IPP biosynthesis. Most bacteria do not use this pathway, but rather the deoxyxylulose pathway.

>PRK04813 D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional

Probab=100.00  E-value=1.4e-32  Score=235.15  Aligned_cols=227  Identities=22%  Similarity=0.283  Sum_probs=194.5

Q ss_pred             eeccCCCCcEEEEecChhhHHhHHHHHHHHhhcCcEEEEcCC---CCHHHHHHHHHhcCceEEEeChHHHHHHHhcCCcC
Q 026609            6 QETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK---FDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVK   82 (236)
Q Consensus         6 ~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~---~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~   82 (236)
                      +.++...+|++++.+|++|..++ ..++.++..|+++++.++   .++..+++.+++++++.+..+|+++..++......
T Consensus       177 ~~~~~~~~~~~~~~~p~~~~~~~-~~~~~~l~~g~~~v~~~~~~~~~~~~~~~~~~~~~~t~~~~~p~~~~~~~~~~~~~  255 (503)
T PRK04813        177 EDFALPEGPQFLNQAPYSFDLSV-MDLYPTLASGGTLVALPKDMTANFKQLFETLPQLPINVWVSTPSFADMCLLDPSFN  255 (503)
T ss_pred             HHcCCCcCceeeecCCcchhHhH-HHHHHHHhcCCEEEEcChhhhcCHHHHHHHHHHcCCeEEEeChHHHHHHHHhhccC
Confidence            34567788999999999999998 677899999999999875   57899999999999999999999998877665555


Q ss_pred             CCCCCCceEEeecCCCCCHHHHHHHHHhCCCCceeeccccccccccccccccCC---CCCCCCCCccccCCCcEEEEEeC
Q 026609           83 KFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVGYGLTETSGIATMENSF---AGSRNIGSAGALAPGVEALIVSV  159 (236)
Q Consensus        83 ~~~l~~lr~i~~~G~~~~~~~~~~~~~~~~~~~v~~~~YG~tE~g~~~~~~~~~---~~~~~~~~~g~p~~~~~~~~~~~  159 (236)
                      ...++++|.++++|+++++++.+++.+.+++..+++ .||+||++.........   ........+|+|.++++++++| 
T Consensus       256 ~~~~~~l~~i~~~G~~l~~~~~~~~~~~~~~~~~~~-~yG~tE~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~d-  333 (503)
T PRK04813        256 EEHLPNLTHFLFCGEELPHKTAKKLLERFPSATIYN-TYGPTEATVAVTSIEITDEMLDQYKRLPIGYAKPDSPLLIID-  333 (503)
T ss_pred             cccCCCceEEEEecCcCCHHHHHHHHHHCCCceEEe-CcccchheeEEEEEEecccccccCCCCcccccCCCCEEEEEC-
Confidence            567889999999999999999999999997688888 99999997654432211   1123345689999999999999 


Q ss_pred             CCCCCCCCCCceEEEEecCccchhhcCCccccccccc---CCCeEecCceEEEcCCCcEEEEcccCCceeeccEEeecCC
Q 026609          160 DTQKPLPPNQLGEIWLRGPNMMRGYYNNEQATKLTID---KKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSNW  236 (236)
Q Consensus       160 ~~~~~~~~g~~Gel~v~~~~~~~~~~~~~~~~~~~~~---~~~~~~TgD~~~~~~~g~~~~~GR~~d~i~~~G~~i~p~~  236 (236)
                      +++.+++.|+.|||+++++.++.+|+++++.+...|.   ..+||+|||++++ ++|++++.||.+|+|+++|++|+|.|
T Consensus       334 ~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~g~~~~~tGD~~~~-~~g~~~~~GR~~d~i~~~G~~v~~~~  412 (503)
T PRK04813        334 EEGTKLPDGEQGEIVISGPSVSKGYLNNPEKTAEAFFTFDGQPAYHTGDAGYL-EDGLLFYQGRIDFQIKLNGYRIELEE  412 (503)
T ss_pred             CCCCCCCCCCceEEEEeccccccccCCChhHhHHhhccCCCceeEECCceEEe-eCCeEEEeccccceEEECcEEeCHHH
Confidence            6889999999999999999999999999988877662   2359999999999 99999999999999999999999964

>PRK07868 acyl-CoA synthetase; Validated

Probab=100.00  E-value=8.8e-33  Score=251.79  Aligned_cols=218  Identities=21%  Similarity=0.265  Sum_probs=176.0

Q ss_pred             eccCCCCcEEEEecChhhHHhHHHHHHHHhhcCcEEEEcCCCCHHHHHHHHHhcCceEEEeChHHHHHHHhcCCcCCCCC
Q 026609            7 ETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDL   86 (236)
Q Consensus         7 ~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l   86 (236)
                      .+++.++|++++.+|++|.+++...++.++..|+++++.+++++..+++.++++++|+++++|++++.|++.......++
T Consensus       640 ~~~l~~~d~~L~~~Pl~h~~gl~~~l~~~l~gG~~vvl~~~~~~~~~~~~I~~~~vT~~~~~Ps~l~~L~~~~~~~~~~~  719 (994)
T PRK07868        640 AAALDRRDTVYCLTPLHHESGLLVSLGGAVVGGSRIALSRGLDPDRFVQEVRQYGVTVVSYTWAMLREVVDDPAFVLHGN  719 (994)
T ss_pred             hcCCCCCCeEEEecChHHHhHHHHHHHHHhccceEEEecCCCCHHHHHHHHHHhCCcEEEeHHHHHHHHHhCcCCccCCC
Confidence            45678899999999999999996667777888888888888999999999999999999999999999988654444567


Q ss_pred             CCceEEeecCCCCCHHHHHHHHHhCCCCceeeccccccccccccccccCCCCCCCCCCccccCCCc-EEEEE--e-----
Q 026609           87 SSLKLVGSGAAPLGKELMEECAKNVPSATVIQVGYGLTETSGIATMENSFAGSRNIGSAGALAPGV-EALIV--S-----  158 (236)
Q Consensus        87 ~~lr~i~~~G~~~~~~~~~~~~~~~~~~~v~~~~YG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~-~~~~~--~-----  158 (236)
                      +++|.++  |+.++++++++|.+.++...+++ .||+||++.+....  .  ..+.+++|+|++++ ++++.  |     
T Consensus       720 ~slr~~~--g~gl~~~l~~~~~~~~~~~~l~~-~YG~TE~~~~~~~~--~--~~~~~svG~p~pg~~~v~i~~~d~~~g~  792 (994)
T PRK07868        720 HPVRLFI--GSGMPTGLWERVVEAFAPAHVVE-FFATTDGQAVLANV--S--GAKIGSKGRPLPGAGRVELAAYDPEHDL  792 (994)
T ss_pred             CceEEEe--cCCCCHHHHHHHHHHhCchheee-eeeccccccccccc--C--CCCCcccCCccCCCCceeEEEecCcCCc
Confidence            7899876  34599999999999998778888 99999987654321  1  23557899999997 56553  1     


Q ss_pred             ---CCCC--CCCCCCCceEEEEecCccchhhcCCcccc--cccc-cCCCeEecCceEEEcCCCcEEEEcccCCceeeccE
Q 026609          159 ---VDTQ--KPLPPNQLGEIWLRGPNMMRGYYNNEQAT--KLTI-DKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGF  230 (236)
Q Consensus       159 ---~~~~--~~~~~g~~Gel~v~~~~~~~~~~~~~~~~--~~~~-~~~~~~~TgD~~~~~~~g~~~~~GR~~d~i~~~G~  230 (236)
                         .++|  +.++.|+.|||+++++...     +++.+  ...| ..+|||+|||++++|+||+++|+||+||+||++|+
T Consensus       793 li~d~~G~~~~~~~ge~Gel~~~~~~~~-----~p~~t~~~~~~~~~dgw~~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~  867 (994)
T PRK07868        793 ILEDDRGFVRRAEVNEVGVLLARARGPI-----DPTASVKRGVFAPADTWISTEYLFRRDDDGDYWLVDRRGSVIRTARG  867 (994)
T ss_pred             eeecCCceEEEcCCCCceEEEEecCCCC-----ChhhhhHhcccccCCEEEeccceEEEcCCCCEEEeccCCCEEEeCCc
Confidence               1345  5678899999999987532     33322  1123 24799999999999999999999999999999999


Q ss_pred             EeecCC
Q 026609          231 QVTSNW  236 (236)
Q Consensus       231 ~i~p~~  236 (236)
                      +|+|+|
T Consensus       868 ~I~p~E  873 (994)
T PRK07868        868 PVYTEP  873 (994)
T ss_pred             eEcHHH
Confidence            999976

>PRK05691 peptide synthase; Validated

Probab=100.00  E-value=6.3e-33  Score=279.54  Aligned_cols=226  Identities=18%  Similarity=0.216  Sum_probs=198.2

Q ss_pred             eeeccCCCCcEEEEecChhhHHhHHHHHHHHhhcCcEEEEcCC---CCHHHHHHHHHhcCceEEEeChHHHHHHHhcCCc
Q 026609            5 DQETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK---FDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLV   81 (236)
Q Consensus         5 ~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~---~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~   81 (236)
                      ...+++.++|++++..++.+..++ ..++.++..|+++++.+.   .++..+++.++++++|++.++|++++.++...  
T Consensus      3902 ~~~~~~~~~~~~~~~~s~~fd~s~-~~~~~~l~~G~~l~i~~~~~~~~~~~l~~~~~~~~vt~~~~~Ps~~~~l~~~~-- 3978 (4334)
T PRK05691       3902 VPYLALSEADVIAQTASQSFDISV-WQFLAAPLFGARVEIVPNAIAHDPQGLLAHVQAQGITVLESVPSLIQGMLAED-- 3978 (4334)
T ss_pred             HHhcCCCccceEEEecCCchhHHH-HHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhhc--
Confidence            455788999999999999999999 789999999999999874   57899999999999999999999999887642  


Q ss_pred             CCCCCCCceEEeecCCCCCHHHHHHHHHhCCCCceeeccccccccccccccccCCC--CCCCCCCccccCCCcEEEEEeC
Q 026609           82 KKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVGYGLTETSGIATMENSFA--GSRNIGSAGALAPGVEALIVSV  159 (236)
Q Consensus        82 ~~~~l~~lr~i~~~G~~~~~~~~~~~~~~~~~~~v~~~~YG~tE~g~~~~~~~~~~--~~~~~~~~g~p~~~~~~~~~~~  159 (236)
                       ...++++|.++.+||++++++.+.|.+.+++..+++ .||+||++..++......  .......+|+|++++.+.++| 
T Consensus      3979 -~~~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n-~YG~TE~t~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~v~d- 4055 (4334)
T PRK05691       3979 -RQALDGLRWMLPTGEAMPPELARQWLQRYPQIGLVN-AYGPAECSDDVAFFRVDLASTRGSYLPIGSPTDNNRLYLLD- 4055 (4334)
T ss_pred             -cccCCCceEEEecCCcCCHHHHHHHHHhCCCCeEEe-CccCccceeEEEEEEcccccccCCcCCCCCccCCCEEEEEC-
Confidence             335689999999999999999999999888788988 999999988665432221  122334699999999999998 


Q ss_pred             CCCCCCCCCCceEEEEecCccchhhcCCccccccccc-------CCCeEecCceEEEcCCCcEEEEcccCCceeeccEEe
Q 026609          160 DTQKPLPPNQLGEIWLRGPNMMRGYYNNEQATKLTID-------KKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV  232 (236)
Q Consensus       160 ~~~~~~~~g~~Gel~v~~~~~~~~~~~~~~~~~~~~~-------~~~~~~TgD~~~~~~~g~~~~~GR~~d~i~~~G~~i  232 (236)
                      +.++++|.|..|||+|+|+.++.||+++++.+...|.       ..+||+|||++++++||.++|+||+|++||++|++|
T Consensus      4056 ~~~~~~p~g~~GEL~i~G~~v~~GY~~~~~~t~~~f~~~p~~~~~~~~yrTGDl~~~~~dG~l~~~GR~d~qvki~G~ri 4135 (4334)
T PRK05691       4056 EALELVPLGAVGELCVAGTGVGRGYVGDPLRTALAFVPHPFGAPGERLYRTGDLARRRSDGVLEYVGRIDHQVKIRGYRI 4135 (4334)
T ss_pred             CCCCCCCCCCceEEEEecccccccccCCcccchhhcccCCCCCCCceeeccCcceeecCCCcEEEecccCCcEEeceEEe
Confidence            6899999999999999999999999999999998883       346999999999999999999999999999999999


Q ss_pred             ecCC
Q 026609          233 TSNW  236 (236)
Q Consensus       233 ~p~~  236 (236)
                      .|.|
T Consensus      4136 el~e 4139 (4334)
T PRK05691       4136 ELGE 4139 (4334)
T ss_pred             cHHH
Confidence            9865

>PRK13388 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=1.3e-32  Score=237.40  Aligned_cols=222  Identities=24%  Similarity=0.318  Sum_probs=182.7

Q ss_pred             eeeccCCCCcEEEEecChhhHHhHHHHHHHHhhcCcEEEEcCCCCHHHHHHHHHhcCceEEEeChHHHHHHHhcCCcCCC
Q 026609            5 DQETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKF   84 (236)
Q Consensus         5 ~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~   84 (236)
                      ...++..++|+++..+|++|..++...++.++..|+++++.+.+++..+++.+++++++.+..+|+.+..++........
T Consensus       183 ~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~vt~~~~~p~~l~~l~~~~~~~~~  262 (540)
T PRK13388        183 TERFGLTRDDVCYVSMPLFHSNAVMAGWAPAVASGAAVALPAKFSASGFLDDVRRYGATYFNYVGKPLAYILATPERPDD  262 (540)
T ss_pred             HHHhCCCCCCEEEEeeCchhhcchHHHHHHHHHcCcEEEECCCCCHHHHHHHHHHhCCeEEEehHHHHHHHHhCCCCccc
Confidence            34567888999999999999999966667789999999998888999999999999999999999999988876543222


Q ss_pred             CCCCceEEeecCCCCCHHHHHHHHHhCCCCceeeccccccccccccccccCCCCCCCCCCccccCCCcEEE---------
Q 026609           85 DLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEAL---------  155 (236)
Q Consensus        85 ~l~~lr~i~~~G~~~~~~~~~~~~~~~~~~~v~~~~YG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~---------  155 (236)
                      ..+.+|.+  .|+.++++..+.|.+.++ ..+++ .||+||++.++....    ....+.+|+|++++++.         
T Consensus       263 ~~~~l~~~--~G~~~~~~~~~~~~~~~~-~~l~~-~YG~tE~~~~~~~~~----~~~~~~vG~p~~g~~i~~~~~~~~~~  334 (540)
T PRK13388        263 ADNPLRVA--FGNEASPRDIAEFSRRFG-CQVED-GYGSSEGAVIVVREP----GTPPGSIGRGAPGVAIYNPETLTECA  334 (540)
T ss_pred             cccceEEE--ECCCCCHHHHHHHHHHhC-Cceec-ccccccccceeecCC----CCCCCCCCCCCCCcEEEcCCCCcccc
Confidence            33456643  366778888899999886 78888 999999987665422    23456789999997653         


Q ss_pred             --EEeCCCCCCC-CCCCceEEEEe-cCccchhhcCCcccccccccCCCeEecCceEEEcCCCcEEEEcccCCceeeccEE
Q 026609          156 --IVSVDTQKPL-PPNQLGEIWLR-GPNMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQ  231 (236)
Q Consensus       156 --~~~~~~~~~~-~~g~~Gel~v~-~~~~~~~~~~~~~~~~~~~~~~~~~~TgD~~~~~~~g~~~~~GR~~d~i~~~G~~  231 (236)
                        ++| ++|+++ +++..|||+++ |+.++.+|+++++.+...+ .+|||+|||+++++++|++++.||+||+||++|++
T Consensus       335 ~~~~d-~~g~~~~~~~~~GEl~v~~g~~~~~gY~~~~~~t~~~~-~~g~~~TGD~~~~~~dg~l~i~GR~~d~i~~~G~~  412 (540)
T PRK13388        335 VARFD-AHGALLNADEAIGELVNTAGAGFFEGYYNNPEATAERM-RHGMYWSGDLAYRDADGWIYFAGRTADWMRVDGEN  412 (540)
T ss_pred             ceecc-CccccccCCCcceEEEEecCCcccccccCChHHHHHHh-hcCceeccceEEEcCCCcEEEeccCCceEEECCEE
Confidence              333 344444 45678999998 9999999999999888777 67899999999999999999999999999999999


Q ss_pred             eecCC
Q 026609          232 VTSNW  236 (236)
Q Consensus       232 i~p~~  236 (236)
                      |+|.|
T Consensus       413 v~p~e  417 (540)
T PRK13388        413 LSAAP  417 (540)
T ss_pred             eCHHH
Confidence            99975

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=100.00  E-value=1.9e-32  Score=254.16  Aligned_cols=221  Identities=24%  Similarity=0.414  Sum_probs=187.5

Q ss_pred             eeeccCCCCcEEEEecChhhHHhHHHHHHHHhhcCcEEEEcCC-CCHHHHHHHHHhcCceEEEeChHHHHHHHhcCCcCC
Q 026609            5 DQETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK-FDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKK   83 (236)
Q Consensus         5 ~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~   83 (236)
                      ...++..++|++++.+|++|.+++...++.++..|+++++.+. .+...+.+.++++++|.+..+|++++.+.+..  ..
T Consensus       826 ~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~--~~  903 (1140)
T PRK06814        826 AARIDFSPEDKVFNALPVFHSFGLTGGLVLPLLSGVKVFLYPSPLHYRIIPELIYDTNATILFGTDTFLNGYARYA--HP  903 (1140)
T ss_pred             HHhhCCCCcCEEEEecchHHHHHHHHHHHHHHHcCCEEEEecCcccHHHHHHHHHhcCCEEEEecHHHHHHHHhhc--cc
Confidence            3456778899999999999999997788899999999999874 56778899999999999999999999887753  34


Q ss_pred             CCCCCceEEeecCCCCCHHHHHHHHHhCCCCceeeccccccccccccccccCCCCCCCCCCccccCCCcEEEEEeCCCCC
Q 026609           84 FDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQK  163 (236)
Q Consensus        84 ~~l~~lr~i~~~G~~~~~~~~~~~~~~~~~~~v~~~~YG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~  163 (236)
                      .+++++|.++++|+++++++.+.+.+.++ .++.+ .||+||++..+......  ....+.+|+|.+++++++.+.+ + 
T Consensus       904 ~~~~~lr~v~~gg~~l~~~~~~~~~~~~~-~~~~~-~YG~TE~~~~~~~~~~~--~~~~~~vG~p~~g~~~~~~~~~-~-  977 (1140)
T PRK06814        904 YDFRSLRYVFAGAEKVKEETRQTWMEKFG-IRILE-GYGVTETAPVIALNTPM--HNKAGTVGRLLPGIEYRLEPVP-G-  977 (1140)
T ss_pred             ccccceeEEEEcCCcCCHHHHHHHHHHhC-CcEEe-ccccccccceEEecCCC--CCCCCcCCccCCCCeEEEeecC-C-
Confidence            56789999999999999999999999986 78888 99999998776543322  3446789999999999998742 2 


Q ss_pred             CCCCCCceEEEEecCccchhhcCCcccccccccCCCeEecCceEEEcCCCcEEEEcccCCceeeccEEeecCC
Q 026609          164 PLPPNQLGEIWLRGPNMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSNW  236 (236)
Q Consensus       164 ~~~~g~~Gel~v~~~~~~~~~~~~~~~~~~~~~~~~~~~TgD~~~~~~~g~~~~~GR~~d~i~~~G~~i~p~~  236 (236)
                         .++.|||+++|+.++.+|+++++........+|||+|||++++|+||++++.||.||+||++|++|+|.|
T Consensus       978 ---~~~~Gel~v~g~~~~~gY~~~~~~~~~~~~~~g~~~TGDl~~~d~dG~l~~~GR~~d~i~~~G~~v~~~e 1047 (1140)
T PRK06814        978 ---IDEGGRLFVRGPNVMLGYLRAENPGVLEPPADGWYDTGDIVTIDEEGFITIKGRAKRFAKIAGEMISLAA 1047 (1140)
T ss_pred             ---CCCceEEEEeCCCcchhhcCCCCCCccccCCCCeEecCCEEEECCCCeEEEEecccCeeeeCCEEECHHH
Confidence               3677999999999999999876543222235789999999999999999999999999999999999975

>PRK05620 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=1.9e-32  Score=238.03  Aligned_cols=225  Identities=24%  Similarity=0.362  Sum_probs=187.9

Q ss_pred             eccCCCCcEEEEecChhhHHhHHHHHHHHhhcCcEEEEcC-CCCHHHHHHHHHhcCceEEEeChHHHHHHHhcCCcCCCC
Q 026609            7 ETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFD   85 (236)
Q Consensus         7 ~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~   85 (236)
                      .+++.++|++++.+|++|.+++ ...+.++..|+++++.+ .+++..+++.+++++++.++++|+++..++.........
T Consensus       218 ~~~~~~~~~~l~~~pl~h~~g~-~~~~~~l~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~  296 (576)
T PRK05620        218 SLAVTHGESFLCCVPIYHVLSW-GVPLAAFMSGTPLVFPGPDLSAPTLAKIIATAMPRVAHGVPTLWIQLMVHYLKNPPE  296 (576)
T ss_pred             hcCCCCCCeEEEeCChHHhhhh-HHHHHHHhcCceEEecCCCCCHHHHHHHHHHhcCceeeecCHHHHHHHHHhhccCcc
Confidence            4567889999999999999998 56788899999999875 578999999999999999999999999887754333334


Q ss_pred             CCCceEEeecCCCCCHHHHHHHHHhCCCCceeeccccccccccccccccCCCC------CCCCCCccccCCCcEEEEEeC
Q 026609           86 LSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVGYGLTETSGIATMENSFAG------SRNIGSAGALAPGVEALIVSV  159 (236)
Q Consensus        86 l~~lr~i~~~G~~~~~~~~~~~~~~~~~~~v~~~~YG~tE~g~~~~~~~~~~~------~~~~~~~g~p~~~~~~~~~~~  159 (236)
                      ..++|.++.+|+++++++.+.|.+.++ .++++ .||+||++.++........      ......+|++.++++++++| 
T Consensus       297 ~~~l~~~~~gG~~~~~~~~~~~~~~~~-~~~~~-~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~-  373 (576)
T PRK05620        297 RMSLQEIYVGGSAVPPILIKAWEERYG-VDVVH-VWGMTETSPVGTVARPPSGVSGEARWAYRVSQGRFPASLEYRIVN-  373 (576)
T ss_pred             cCceeEEEEcCCCCCHHHHHHHHHHhC-Cceee-eccccccccceeeeccCCccccccccccccccCCcCCceeEEEec-
Confidence            568999999999999999999999886 78888 9999999876654322110      01123678899999999998 


Q ss_pred             CCCCCCC--CCCceEEEEecCccchhhcCCcccc----------------cccccCCCeEecCceEEEcCCCcEEEEccc
Q 026609          160 DTQKPLP--PNQLGEIWLRGPNMMRGYYNNEQAT----------------KLTIDKKGWVHTGDLGYFDGDGQLYVVDRI  221 (236)
Q Consensus       160 ~~~~~~~--~g~~Gel~v~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~TgD~~~~~~~g~~~~~GR~  221 (236)
                      + +++++  ++..|||+++++.++.+|+++++.+                ...+..++||+|||++++++||.+++.||.
T Consensus       374 ~-g~~~~~~~~~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~f~~~~~~~~~~~~~~~g~~~TGD~~~~~~dg~l~~~GR~  452 (576)
T PRK05620        374 D-GQVMESTDRNEGEIQVRGNWVTASYYHSPTEEGGGAASTFRGEDVEDANDRFTADGWLRTGDVGSVTRDGFLTIHDRA  452 (576)
T ss_pred             C-CccccCCCCCceEEEEEcCcccccccCCccccccccccccccccchhhhcccccCCcEecCceEEEcCCceEEEEech
Confidence            3 66554  5788999999999999999998776                223445789999999999999999999999


Q ss_pred             CCceeeccEEeecCC
Q 026609          222 KELIKYKGFQVTSNW  236 (236)
Q Consensus       222 ~d~i~~~G~~i~p~~  236 (236)
                      ||+|+++|++|+|.|
T Consensus       453 ~d~i~~~G~~i~~~e  467 (576)
T PRK05620        453 RDVIRSGGEWIYSAQ  467 (576)
T ss_pred             hhhhhcCCEEEcHHH
Confidence            999999999999864

>PRK06018 putative acyl-CoA synthetase; Provisional

Probab=100.00  E-value=4.4e-32  Score=234.21  Aligned_cols=222  Identities=25%  Similarity=0.355  Sum_probs=186.9

Q ss_pred             eccCCCCcEEEEecChhhHHhHHHHHHHHhhcCcEEEEcC-CCCHHHHHHHHHhcCceEEEeChHHHHHHHhcCCcCCCC
Q 026609            7 ETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFD   85 (236)
Q Consensus         7 ~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~   85 (236)
                      .++..++|+++..+|++|..++ ...+.++..|+++++.. .+++..+++.++++++|.+.++|+++..|.+..+....+
T Consensus       214 ~~~~~~~d~~~~~~p~~h~~~~-~~~~~~~~~g~~~v~~~~~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~~~  292 (542)
T PRK06018        214 ALGTSAADTMLPVVPLFHANSW-GIAFSAPSMGTKLVMPGAKLDGASVYELLDTEKVTFTAGVPTVWLMLLQYMEKEGLK  292 (542)
T ss_pred             hcCCCCCCEEEEecCHHHHhhh-HHHHhhhhcCceEEccCcCCCHHHHHHHHHhcCCceeecCcHHHHHHHhcccccCCC
Confidence            4567888999999999999998 45567889999998875 578999999999999999999999999998877666667


Q ss_pred             CCCceEEeecCCCCCHHHHHHHHHhCCCCceeeccccccccccccccccCCCC---------CCCCCCccccCCCcEEEE
Q 026609           86 LSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVGYGLTETSGIATMENSFAG---------SRNIGSAGALAPGVEALI  156 (236)
Q Consensus        86 l~~lr~i~~~G~~~~~~~~~~~~~~~~~~~v~~~~YG~tE~g~~~~~~~~~~~---------~~~~~~~g~p~~~~~~~~  156 (236)
                      ++++|.++++|+++++++.++|++ ++ ..+++ .||+||++.++..+.....         ......+|+|.+++++++
T Consensus       293 ~~~lr~~~~~G~~l~~~~~~~~~~-~~-~~~~~-~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~g~~i~v  369 (542)
T PRK06018        293 LPHLKMVVCGGSAMPRSMIKAFED-MG-VEVRH-AWGMTEMSPLGTLAALKPPFSKLPGDARLDVLQKQGYPPFGVEMKI  369 (542)
T ss_pred             cccceEEEEcCCCCCHHHHHHHHH-hC-CCeEe-eecccccCcccccccCccccccCCchhhhhccccCCCCCCCcEEEE
Confidence            889999999999999999999999 75 88999 9999999877654321110         011246899999999999


Q ss_pred             EeCCCCCCCCCC--CceEEEEecCccchhhcCCcccccccccCCCeEecCceEEEcCCCcEEEEcccCCceeeccEEeec
Q 026609          157 VSVDTQKPLPPN--QLGEIWLRGPNMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTS  234 (236)
Q Consensus       157 ~~~~~~~~~~~g--~~Gel~v~~~~~~~~~~~~~~~~~~~~~~~~~~~TgD~~~~~~~g~~~~~GR~~d~i~~~G~~i~p  234 (236)
                      +|+ ++++++.+  ..|||+++++.++.+|+++.   ...++.++||+|||+++++++|.+++.||.||+|+++|++|+|
T Consensus       370 ~d~-~~~~~~~~~~~~Gel~i~g~~~~~gy~~~~---~~~~~~~~~~~TGDl~~~~~~g~~~~~GR~~d~i~~~G~~v~~  445 (542)
T PRK06018        370 TDD-AGKELPWDGKTFGRLKVRGPAVAAAYYRVD---GEILDDDGFFDTGDVATIDAYGYMRITDRSKDVIKSGGEWISS  445 (542)
T ss_pred             ECC-CCCCCCCCCCceeEEEEecCCcchhhhcCc---ccEecCCcEEEcCCEEEEcCCccEEEEecCCCeEEECCEEECH
Confidence            994 67777653  67999999999999999842   2334467999999999999999999999999999999999998


Q ss_pred             CC
Q 026609          235 NW  236 (236)
Q Consensus       235 ~~  236 (236)
                      .|
T Consensus       446 ~e  447 (542)
T PRK06018        446 ID  447 (542)
T ss_pred             HH
Confidence            64

>PLN03102 acyl-activating enzyme; Provisional

Probab=100.00  E-value=4.2e-32  Score=235.95  Aligned_cols=221  Identities=28%  Similarity=0.429  Sum_probs=177.7

Q ss_pred             cCCCCcEEEEecChhhHHhHHHHHHHHhhcCcEEEEcCCCCHHHHHHHHHhcCceEEEeChHHHHHHHhcCCcCCCCCCC
Q 026609            9 AGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSS   88 (236)
Q Consensus         9 ~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~   88 (236)
                      .....++++..+|++|..|+ ...+.++..|+++++.+.+++..+++.++++++|.+.++|+++..|.+.........++
T Consensus       223 ~~~~~~~~l~~~pl~h~~g~-~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~  301 (579)
T PLN03102        223 EMGTCPVYLWTLPMFHCNGW-TFTWGTAARGGTSVCMRHVTAPEIYKNIEMHNVTHMCCVPTVFNILLKGNSLDLSPRSG  301 (579)
T ss_pred             CCCCCCeEEecCChhhhcch-hHHHHHHHhcCcEEeeccCChHHHHHHHHHcCCeEEEeChHHHHHHHhCcccccCCccc
Confidence            34566899999999999998 55677888899999888889999999999999999999999999998875434444567


Q ss_pred             ceEEeecCCCCCHHHHHHHHHhCCCCceeeccccccccccccccccCCCC------------CCCCCCccccCCCcEEEE
Q 026609           89 LKLVGSGAAPLGKELMEECAKNVPSATVIQVGYGLTETSGIATMENSFAG------------SRNIGSAGALAPGVEALI  156 (236)
Q Consensus        89 lr~i~~~G~~~~~~~~~~~~~~~~~~~v~~~~YG~tE~g~~~~~~~~~~~------------~~~~~~~g~p~~~~~~~~  156 (236)
                      ++.++++|+++++++.+++.+ ++ ..+++ .||+||++..+........            ....+..+.+.+  .+.+
T Consensus       302 ~~~~~~gg~~~~~~~~~~~~~-~g-~~i~~-~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~--~v~i  376 (579)
T PLN03102        302 PVHVLTGGSPPPAALVKKVQR-LG-FQVMH-AYGLTEATGPVLFCEWQDEWNRLPENQQMELKARQGVSILGLA--DVDV  376 (579)
T ss_pred             ceEEEECCCCCCHHHHHHHHH-cC-CeEEe-ecCccccCccccccccccccccCCcccccccccCCCccccccc--ceEE
Confidence            888999999999999988865 55 78888 9999999865433211100            011222233333  4556


Q ss_pred             EeCCCCCCCCC--CCceEEEEecCccchhhcCCcccccccccCCCeEecCceEEEcCCCcEEEEcccCCceeeccEEeec
Q 026609          157 VSVDTQKPLPP--NQLGEIWLRGPNMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTS  234 (236)
Q Consensus       157 ~~~~~~~~~~~--g~~Gel~v~~~~~~~~~~~~~~~~~~~~~~~~~~~TgD~~~~~~~g~~~~~GR~~d~i~~~G~~i~p  234 (236)
                      ++.+.+++++.  ++.|||+++++.++.||+++++.+...| .+|||+|||++++|++|++++.||.+|+||++|++|+|
T Consensus       377 ~~~~~~~~v~~~~~~~GEl~v~g~~~~~GY~~~~~~t~~~f-~~gw~~TGDlg~~d~dG~l~i~GR~~d~i~~~G~~v~p  455 (579)
T PLN03102        377 KNKETQESVPRDGKTMGEIVIKGSSIMKGYLKNPKATSEAF-KHGWLNTGDVGVIHPDGHVEIKDRSKDIIISGGENISS  455 (579)
T ss_pred             eccccccccCCCCCCceEEEEECcchhhhhcCChhhhHhhh-ccCceecCceEEEcCCCeEEEEeccCcEEEECCEEECH
Confidence            66566777764  3679999999999999999999988887 67999999999999999999999999999999999998


Q ss_pred             CC
Q 026609          235 NW  236 (236)
Q Consensus       235 ~~  236 (236)
                      .|
T Consensus       456 ~e  457 (579)
T PLN03102        456 VE  457 (579)
T ss_pred             HH
Confidence            65

>PLN02479 acetate-CoA ligase

Probab=100.00  E-value=7e-32  Score=234.10  Aligned_cols=225  Identities=27%  Similarity=0.374  Sum_probs=182.9

Q ss_pred             eccCCCCcEEEEecChhhHHhHHHHHHHHhhcCcEEEEcCCCCHHHHHHHHHhcCceEEEeChHHHHHHHhcCCcCC-CC
Q 026609            7 ETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKK-FD   85 (236)
Q Consensus         7 ~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~-~~   85 (236)
                      .++..++|++++.+|++|.+++...++.+++.|+++++ +.+++..+++.++++++|++.++|+++..|.+...... ..
T Consensus       230 ~~~~~~~~~~~~~~p~~h~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~~  308 (567)
T PLN02479        230 IWGMNEGAVYLWTLPMFHCNGWCFTWTLAALCGTNICL-RQVTAKAIYSAIANYGVTHFCAAPVVLNTIVNAPKSETILP  308 (567)
T ss_pred             hcCCCCCCEEEEecchhhhhhHHHHHHHHhhcCceEec-cCCCHHHHHHHHHHcCCeEEEecHHHHHHHHhhhhhccccc
Confidence            35567889999999999999986555556676766554 56899999999999999999999999999987654332 25


Q ss_pred             CCCceEEeecCCCCCHHHHHHHHHhCCCCceeeccccccccccccccccC---------CCCCCCCCCccccCCCcE-EE
Q 026609           86 LSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVGYGLTETSGIATMENS---------FAGSRNIGSAGALAPGVE-AL  155 (236)
Q Consensus        86 l~~lr~i~~~G~~~~~~~~~~~~~~~~~~~v~~~~YG~tE~g~~~~~~~~---------~~~~~~~~~~g~p~~~~~-~~  155 (236)
                      ++++|.++++|+++++++.+.|.+.  +..+++ .||+||++..+..+..         ..........|.+.++.. ++
T Consensus       309 ~~~l~~~~~~G~~~~~~~~~~~~~~--~~~~~~-~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~  385 (567)
T PLN02479        309 LPRVVHVMTAGAAPPPSVLFAMSEK--GFRVTH-TYGLSETYGPSTVCAWKPEWDSLPPEEQARLNARQGVRYIGLEGLD  385 (567)
T ss_pred             ccceeEEEEcCCCCCHHHHHHHHhc--CCceec-ccccccccccccceeccccccccCcccccccccccCCCcCCcCcee
Confidence            7899999999999999999999876  478888 9999998654332210         000011134577778775 78


Q ss_pred             EEeCCCCCCCCCC--CceEEEEecCccchhhcCCcccccccccCCCeEecCceEEEcCCCcEEEEcccCCceeeccEEee
Q 026609          156 IVSVDTQKPLPPN--QLGEIWLRGPNMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVT  233 (236)
Q Consensus       156 ~~~~~~~~~~~~g--~~Gel~v~~~~~~~~~~~~~~~~~~~~~~~~~~~TgD~~~~~~~g~~~~~GR~~d~i~~~G~~i~  233 (236)
                      ++|++++++++.+  +.|||+++++.++.+|+++++.+...+ .++||+|||+++++++|++++.||.||+||++|++|+
T Consensus       386 i~d~~~~~~~~~~g~~~GEl~v~g~~~~~GY~~~~~~t~~~~-~~g~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~  464 (567)
T PLN02479        386 VVDTKTMKPVPADGKTMGEIVMRGNMVMKGYLKNPKANEEAF-ANGWFHSGDLGVKHPDGYIEIKDRSKDIIISGGENIS  464 (567)
T ss_pred             EEcCCCCcccCCCCCCceEEEEeccchhhhhhcCcccccchh-cCCceecceeEEEcCCccEEEeccccceEEeCCEEEc
Confidence            8886678888764  679999999999999999999998888 6889999999999999999999999999999999999


Q ss_pred             cCC
Q 026609          234 SNW  236 (236)
Q Consensus       234 p~~  236 (236)
                      |.|
T Consensus       465 ~~e  467 (567)
T PLN02479        465 SLE  467 (567)
T ss_pred             HHH
Confidence            975

>PRK07445 O-succinylbenzoic acid--CoA ligase; Reviewed

Probab=100.00  E-value=4.4e-32  Score=229.14  Aligned_cols=206  Identities=24%  Similarity=0.305  Sum_probs=164.5

Q ss_pred             ccCCCCcEEEEecChhhHHhHHHHHHHHhhcCcEEEEcCCCCHHHHHHHHHhcCceEEEeChHHHHHHHhcCCcCCCCCC
Q 026609            8 TAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLS   87 (236)
Q Consensus         8 ~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~   87 (236)
                      ++..+ ++.++++|++|.+|+ ..++.+++.|+++++.+.............++++.++++|++++.+++..   ...++
T Consensus       156 ~~~~~-~~~~~~~Pl~h~~g~-~~~~~~l~~G~t~v~~~~~~~~~~~~~~~~~~~t~~~~vP~~l~~l~~~~---~~~l~  230 (452)
T PRK07445        156 FQLQQ-VNSFCVLPLYHVSGL-MQFMRSFLTGGKLVILPYKRLKSGQELPPNPSDFFLSLVPTQLQRLLQLR---PQWLA  230 (452)
T ss_pred             hcCCC-CceEeccCchhhhhH-HHHHHHHHcCCeEEEcChHhccchhhhhhhcCceEEEehHHHHHHHHhhC---hhhhh
Confidence            34443 467889999999999 67788999999999987432222233445788999999999999998732   33578


Q ss_pred             CceEEeecCCCCCHHHHHHHHHhCCCCceeeccccccccccccccccCCCCCCCCCCccccCCCcEEEEEeCCCCCCCCC
Q 026609           88 SLKLVGSGAAPLGKELMEECAKNVPSATVIQVGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPP  167 (236)
Q Consensus        88 ~lr~i~~~G~~~~~~~~~~~~~~~~~~~v~~~~YG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~  167 (236)
                      ++|.++++|+++++++.+.+.+.  +..+.+ .||+||++..+..............+|+|.++++++++         .
T Consensus       231 ~l~~i~~gG~~l~~~~~~~~~~~--~~~l~~-~YG~TE~~~~~~~~~~~~~~~~~~~~G~~~p~~~v~i~---------~  298 (452)
T PRK07445        231 QFRTILLGGAPAWPSLLEQARQL--QLRLAP-TYGMTETASQIATLKPDDFLAGNNSSGQVLPHAQITIP---------A  298 (452)
T ss_pred             cceEEEECCccCCHHHHHHHHhc--CCeEec-CcchhhhcccccccCchhhccCCCcCCccCCCCeEEEc---------C
Confidence            99999999999999999888764  478888 99999998655433222212234678999999999987         3


Q ss_pred             CCceEEEEecCccchhhcCCcccccccccCCCeEecCceEEEcCCCcEEEEcccCCceeeccEEeecCC
Q 026609          168 NQLGEIWLRGPNMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSNW  236 (236)
Q Consensus       168 g~~Gel~v~~~~~~~~~~~~~~~~~~~~~~~~~~~TgD~~~~~~~g~~~~~GR~~d~i~~~G~~i~p~~  236 (236)
                      |+.|||+|+++.++.+|++++.      ..++||+|||++++|+||++++.||+||+||++|+||+|.|
T Consensus       299 g~~Gel~v~g~~~~~gY~~~~~------~~~g~~~TGDl~~~d~dG~l~~~GR~dd~I~~~G~~V~p~e  361 (452)
T PRK07445        299 NQTGNITIQAQSLALGYYPQIL------DSQGIFETDDLGYLDAQGYLHILGRNSQKIITGGENVYPAE  361 (452)
T ss_pred             CCcceEEEeCCccchhhcCCcc------CCCCEEECCCEEEEcCCCCEEEEeecCCEEEECCEEECHHH
Confidence            6779999999999999997532      25689999999999999999999999999999999999975

>TIGR01923 menE O-succinylbenzoate-CoA ligase

Probab=100.00  E-value=1.2e-31  Score=225.43  Aligned_cols=214  Identities=30%  Similarity=0.454  Sum_probs=179.6

Q ss_pred             eeeccCCCCcEEEEecChhhHHhHHHHHHHHhhcCcEEEEcCCCCHHHHHHHHHhcCceEEEeChHHHHHHHhcCCcCCC
Q 026609            5 DQETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKF   84 (236)
Q Consensus         5 ~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~   84 (236)
                      ...++.+++|++++.+|++|.+++ ..++.++..|+++++.+.+  ..+++.++++++|.+.++|+++..+.+.....  
T Consensus       144 ~~~~~~~~~d~~~~~~~~~~~~~~-~~~~~~l~~g~~~~~~~~~--~~~~~~l~~~~~t~~~~~P~~l~~l~~~~~~~--  218 (436)
T TIGR01923       144 KENLGFTEDDNWLLSLPLYHISGL-SILFRWLIEGATLRIVDKF--NQLLEMIANERVTHISLVPTQLNRLLDEGGHN--  218 (436)
T ss_pred             HhhcCCCCCceEEEccCcHhHHHH-HHHHHHHhcCceEEecchH--HHHHHHHHHhCCeEEEeHHHHHHHHHhCcCCC--
Confidence            345678889999999999999999 6788999999999998765  38999999999999999999999998865422  


Q ss_pred             CCCCceEEeecCCCCCHHHHHHHHHhCCCCceeeccccccccccccccccCCCCCCCCCCccccCCCcEEEEEeCCCCCC
Q 026609           85 DLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKP  164 (236)
Q Consensus        85 ~l~~lr~i~~~G~~~~~~~~~~~~~~~~~~~v~~~~YG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~  164 (236)
                        +++|.++++|+++++++.+++.+.  +..+.+ .||+||++..+............ .+|.|++++++++..++.   
T Consensus       219 --~~l~~~~~~G~~~~~~~~~~~~~~--~~~~~~-~YG~tE~~~~~~~~~~~~~~~~~-~~G~~~~~~~~~i~~~~~---  289 (436)
T TIGR01923       219 --ENLRKILLGGSAIPAPLIEEAQQY--GLPIYL-SYGMTETCSQVTTATPEMLHARP-DVGRPLAGREIKIKVDNK---  289 (436)
T ss_pred             --CceEEEEECCCCCCHHHHHHHHHh--CCceee-EecCCccchhccCcCcccccccc-CCCccCCCcEEEEEeCCC---
Confidence              689999999999999999988764  488888 99999998766654333222223 489999999999844222   


Q ss_pred             CCCCCceEEEEecCccchhhcCCcccccccccCCCeEecCceEEEcCCCcEEEEcccCCceeeccEEeecCC
Q 026609          165 LPPNQLGEIWLRGPNMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSNW  236 (236)
Q Consensus       165 ~~~g~~Gel~v~~~~~~~~~~~~~~~~~~~~~~~~~~~TgD~~~~~~~g~~~~~GR~~d~i~~~G~~i~p~~  236 (236)
                         ++.|||+++++.++.+|+++++.+...+ .++||+|||++++++||++++.||.||++|++|++|+|.|
T Consensus       290 ---~~~Gel~v~~~~~~~gy~~~~~~~~~~~-~~~~~~TGD~~~~~~dg~~~~~GR~~d~i~~~G~~v~~~~  357 (436)
T TIGR01923       290 ---EGHGEIMVKGANLMKGYLYQGELTPAFE-QQGWFNTGDIGELDGEGFLYVLGRRDDLIISGGENIYPEE  357 (436)
T ss_pred             ---CCceEEEEECCccchhhCCChhhhhhhh-cCCCeeccceEEEcCCCCEEEeccccCeEEeCCEeeCHHH
Confidence               2779999999999999999776665544 6799999999999999999999999999999999999864

This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate.

>PRK08279 long-chain-acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.4e-31  Score=233.75  Aligned_cols=223  Identities=22%  Similarity=0.285  Sum_probs=177.8

Q ss_pred             eeeccCCCCcEEEEecChhhHHhHHHHHHHHhhcCcEEEEcCCCCHHHHHHHHHhcCceEEEeChHHHHHHHhcCCcCCC
Q 026609            5 DQETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKF   84 (236)
Q Consensus         5 ~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~   84 (236)
                      .+.+++.++|++++.+|++|.+|+...++.++..|+++++.+.+++..+++.++++++|.+.++|++++.++........
T Consensus       232 ~~~~~l~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~p~l~~~l~~~~~~~~~  311 (600)
T PRK08279        232 GGLLRLTPDDVLYCCLPLYHNTGGTVAWSSVLAAGATLALRRKFSASRFWDDVRRYRATAFQYIGELCRYLLNQPPKPTD  311 (600)
T ss_pred             HHhcCCCCCcEEEEecCchhhhhHHHHHHHHHhcCcEEEEcCCCCHHHHHHHHHHhcceEEeehHHHHHHHHhCCCCccc
Confidence            34467889999999999999999977888889999999999999999999999999999999999999999876554444


Q ss_pred             CCCCceEEeecCCCCCHHHHHHHHHhCCCCceeeccccccccccccccccCCCCCCCCCCccccCC----CcEEEEEeCC
Q 026609           85 DLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVGYGLTETSGIATMENSFAGSRNIGSAGALAP----GVEALIVSVD  160 (236)
Q Consensus        85 ~l~~lr~i~~~G~~~~~~~~~~~~~~~~~~~v~~~~YG~tE~g~~~~~~~~~~~~~~~~~~g~p~~----~~~~~~~~~~  160 (236)
                      ...++|.+  +|+.+++++++.|.+.++...+++ .||+||++......     ....+.+|.+.+    +..+...+.+
T Consensus       312 ~~~~l~~~--~g~~l~~~~~~~~~~~~~~~~l~~-~YG~tE~~~~~~~~-----~~~~~~~g~~~~~~~~~~~~~~~~~~  383 (600)
T PRK08279        312 RDHRLRLM--IGNGLRPDIWDEFQQRFGIPRILE-FYAASEGNVGFINV-----FNFDGTVGRVPLWLAHPYAIVKYDVD  383 (600)
T ss_pred             cCcceeEE--ecCCCCHHHHHHHHHHhCcceeee-eecccccceeeccc-----CCCCcccccccccccccceeeeeccC
Confidence            45567754  478899999999999998556787 99999987643321     223345565544    3333222211


Q ss_pred             C--------C--CCCCCCCceEEE--EecCccchhhcCCcccccccc------cCCCeEecCceEEEcCCCcEEEEcccC
Q 026609          161 T--------Q--KPLPPNQLGEIW--LRGPNMMRGYYNNEQATKLTI------DKKGWVHTGDLGYFDGDGQLYVVDRIK  222 (236)
Q Consensus       161 ~--------~--~~~~~g~~Gel~--v~~~~~~~~~~~~~~~~~~~~------~~~~~~~TgD~~~~~~~g~~~~~GR~~  222 (236)
                      .        +  .++++|+.||++  +.++.++.|| ++++.+...+      ..++||+|||+++++++|.+++.||.|
T Consensus       384 ~~~~i~~~~~~~~~~~~g~~Gel~~~i~~~~~~~GY-~~~~~t~~~~~~~~~~~~~~~~~TGDlg~~~~dG~l~~~GR~~  462 (600)
T PRK08279        384 TGEPVRDADGRCIKVKPGEVGLLIGRITDRGPFDGY-TDPEASEKKILRDVFKKGDAWFNTGDLMRDDGFGHAQFVDRLG  462 (600)
T ss_pred             cCceeeCCCCccccCCCCCceeEEEEecCccccccc-CCchhhHHHHhhcccCCCCceEeecceEEEcCCccEEEecccC
Confidence            2        2  357889999998  6789999999 7777766554      235799999999999999999999999


Q ss_pred             CceeeccEEeecCC
Q 026609          223 ELIKYKGFQVTSNW  236 (236)
Q Consensus       223 d~i~~~G~~i~p~~  236 (236)
                      |+||++|++|+|.|
T Consensus       463 d~ik~~G~~i~p~e  476 (600)
T PRK08279        463 DTFRWKGENVATTE  476 (600)
T ss_pred             CeEEECCcccCHHH
Confidence            99999999999975

>PRK05850 acyl-CoA synthetase; Validated

Probab=100.00  E-value=9e-32  Score=233.93  Aligned_cols=222  Identities=23%  Similarity=0.419  Sum_probs=175.0

Q ss_pred             CCCcEEEEecChhhHHhHHHHHHHHhhcCcEEEEcCCC----CHHHHHHHHHhcCceEEEeChHHHHHHHhc-CC---cC
Q 026609           11 ELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKF----DLEMFLRAIEKHRVTHIWVVPPLILALAKH-GL---VK   82 (236)
Q Consensus        11 ~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~-~~---~~   82 (236)
                      .+++++++++|++|..|+...++.+++.|+++++.++.    ++..+++.+++++++.. .+|+.+..++.. ..   ..
T Consensus       205 ~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~p~~~~~~i~~~~~~~~-~~p~~~~~~~~~~~~~~~~~  283 (578)
T PRK05850        205 PPDTTVVSWLPFYHDMGLVLGVCAPILGGCPAVLTSPVAFLQRPARWMQLLASNPHAFS-AAPNFAFELAVRKTSDDDMA  283 (578)
T ss_pred             CCcceEEEECCCCCCchhHHHHHHHHhcCCcEEEeCHHHHHHCHHHHHHHHHHcCCeEE-eCCcHHHHHHHHhcchhhhc
Confidence            45789999999999999977899999999999998742    68899999999999854 567654444322 11   12


Q ss_pred             CCCCCCceEEeecCCCCCHHHHHHHHHhCC-----CCceeeccccccccccccccccCCCCC------------------
Q 026609           83 KFDLSSLKLVGSGAAPLGKELMEECAKNVP-----SATVIQVGYGLTETSGIATMENSFAGS------------------  139 (236)
Q Consensus        83 ~~~l~~lr~i~~~G~~~~~~~~~~~~~~~~-----~~~v~~~~YG~tE~g~~~~~~~~~~~~------------------  139 (236)
                      ..+++++|.++++|+++++++.++|.+.|+     ...+.+ .||+||++..+.........                  
T Consensus       284 ~~~~~~lr~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~-~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  362 (578)
T PRK05850        284 GLDLGGVLGIISGSERVHPATLKRFADRFAPFNLRETAIRP-SYGLAEATVYVATREPGQPPESVRFDYEKLSAGHAKRC  362 (578)
T ss_pred             CcchhhheeEEECcCCCCHHHHHHHHHHHHhcCcCcccccC-ccchhhhhhheeccCCCCCceEEEECHHHHhCCceEec
Confidence            345678999999999999999999998874     235677 99999987554432111000                  


Q ss_pred             -----CCCCCccccCCCcEEEEEeCCCCCCCCCCCceEEEEecCccchhhcCCccccccccc-----------CCCeEec
Q 026609          140 -----RNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQATKLTID-----------KKGWVHT  203 (236)
Q Consensus       140 -----~~~~~~g~p~~~~~~~~~~~~~~~~~~~g~~Gel~v~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~T  203 (236)
                           ......|.|. +.+++++|++++++++.|+.|||+++|+.++.+|+++++.+...|.           .++||+|
T Consensus       363 ~~~~g~~~~~~g~p~-~~~~~ivd~~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~f~~~~~~~~~~~~~~~w~~T  441 (578)
T PRK05850        363 ETGGGTPLVSYGSPR-SPTVRIVDPDTCIECPAGTVGEIWVHGDNVAAGYWQKPEETERTFGATLVDPSPGTPEGPWLRT  441 (578)
T ss_pred             CCCCCceEEeccCCC-CCEEEEEcCCCCcCCCCCCEEEEEEecCcccccccCChhhhHHHhhcccccccccCCCCCeeec
Confidence                 0001234443 5789999977789999999999999999999999999999887773           2579999


Q ss_pred             CceEEEcCCCcEEEEcccCCceeeccEEeecCC
Q 026609          204 GDLGYFDGDGQLYVVDRIKELIKYKGFQVTSNW  236 (236)
Q Consensus       204 gD~~~~~~~g~~~~~GR~~d~i~~~G~~i~p~~  236 (236)
                      ||+++++ +|++++.||++|+||++|++|+|+|
T Consensus       442 GDl~~~~-~G~l~~~GR~~d~i~~~G~~i~p~e  473 (578)
T PRK05850        442 GDLGFIS-EGELFIVGRIKDLLIVDGRNHYPDD  473 (578)
T ss_pred             cceeeEE-CCEEEEEcccccEEEECCeecCHHH
Confidence            9999997 8999999999999999999999975

>PRK09192 acyl-CoA synthetase; Validated

Probab=99.97  E-value=2.9e-31  Score=230.73  Aligned_cols=226  Identities=25%  Similarity=0.417  Sum_probs=182.7

Q ss_pred             eccCCCCcEEEEecChhhHHhHHHHHHHHhhcCcEEEEcCC----CCHHHHHHHHHhcCceEEEeChHHHHHHHhcCC--
Q 026609            7 ETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK----FDLEMFLRAIEKHRVTHIWVVPPLILALAKHGL--   80 (236)
Q Consensus         7 ~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~--   80 (236)
                      .++..++|++++++|++|.+|+...++.++..|+++++.+.    .++..+++.+.+++++.+...|..+..+.....  
T Consensus       212 ~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~~~~~~l~~~~~~~~  291 (579)
T PRK09192        212 GLKVRPGDRCVSWLPFYHDMGLVGFLLTPVATQLSVDYLPTRDFARRPLQWLDLISRNRGTISYSPPFGYELCARRVNSK  291 (579)
T ss_pred             cccCCCCCeEEEeCCCCCcchhHHHHHHHHHhCCeeEeeCHHHHHHCHHHHHHHHHhcCcEEEeCCcHHHHHHHHhhccc
Confidence            57788899999999999999997778888999999977652    368899999999999877665544444433221  


Q ss_pred             -cCCCCCCCceEEeecCCCCCHHHHHHHHHhCCC-----CceeeccccccccccccccccCCCC----------------
Q 026609           81 -VKKFDLSSLKLVGSGAAPLGKELMEECAKNVPS-----ATVIQVGYGLTETSGIATMENSFAG----------------  138 (236)
Q Consensus        81 -~~~~~l~~lr~i~~~G~~~~~~~~~~~~~~~~~-----~~v~~~~YG~tE~g~~~~~~~~~~~----------------  138 (236)
                       ....+++++|.++++|+++++++.+.|.+.++.     ..+++ .||+||++..+........                
T Consensus       292 ~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~g~~~~~~~~-~yG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  370 (579)
T PRK09192        292 DLAELDLSCWRVAGIGADMIRPDVLHQFAEAFAPAGFDDKAFMP-SYGLAEATLAVSFSPLGSGIVVEEVDRDRLEYQGK  370 (579)
T ss_pred             cccccchhhhheeEecCccCCHHHHHHHHHHHHhcCCChhhccc-ccccccceeEEeccCCCCCceEEEEcHHHhcCCce
Confidence             123467899999999999999999999988642     24667 9999999765543221100                


Q ss_pred             ----------CCCCCCccccCCCcEEEEEeCCCCCCCCCCCceEEEEecCccchhhcCCcccccccccCCCeEecCceEE
Q 026609          139 ----------SRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQATKLTIDKKGWVHTGDLGY  208 (236)
Q Consensus       139 ----------~~~~~~~g~p~~~~~~~~~~~~~~~~~~~g~~Gel~v~~~~~~~~~~~~~~~~~~~~~~~~~~~TgD~~~  208 (236)
                                ......+|+|.++++++++| +++++++.|+.|||+++|+.++.+|+++ +.+...+..++||+|||+++
T Consensus       371 ~~~~~~~~~~~~~~~~vG~~~p~~~v~i~d-~~~~~~~~g~~Gel~i~g~~~~~gY~~~-~~~~~~~~~dgw~~TGDlg~  448 (579)
T PRK09192        371 AVAPGAETRRVRTFVNCGKALPGHEIEIRN-EAGMPLPERVVGHICVRGPSLMSGYFRD-EESQDVLAADGWLDTGDLGY  448 (579)
T ss_pred             eeccCCCCccceeEeecCCcCCCcEEEEEC-CCCCCCCCCCEEEEEecCCchhhhhcCC-ccccccccCCceeeccceee
Confidence                      00124689999999999999 5688999999999999999999999999 66777777789999999999


Q ss_pred             EcCCCcEEEEcccCCceeeccEEeecCC
Q 026609          209 FDGDGQLYVVDRIKELIKYKGFQVTSNW  236 (236)
Q Consensus       209 ~~~~g~~~~~GR~~d~i~~~G~~i~p~~  236 (236)
                      + ++|+++++||+||+||++|++|+|.|
T Consensus       449 ~-~~G~l~~~GR~dd~i~~~G~~v~p~e  475 (579)
T PRK09192        449 L-LDGYLYITGRAKDLIIINGRNIWPQD  475 (579)
T ss_pred             E-ECCEEEEEeccccEEEECCCccCHHH
Confidence            9 99999999999999999999999975

>PRK07768 long-chain-fatty-acid--CoA ligase; Validated

Probab=99.97  E-value=7.9e-31  Score=226.53  Aligned_cols=227  Identities=26%  Similarity=0.421  Sum_probs=181.9

Q ss_pred             eccCCCC-cEEEEecChhhHHhHHHHHHHHhhcCcEEEEcCC----CCHHHHHHHHHhcCceEEEeChHHHHHHHhcC--
Q 026609            7 ETAGELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK----FDLEMFLRAIEKHRVTHIWVVPPLILALAKHG--   79 (236)
Q Consensus         7 ~~~~~~~-d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~--   79 (236)
                      ..+..++ |++++.+|++|.+|+...+..++..|+++++.++    .++..+++++++++++.+...|..+..+.+..  
T Consensus       187 ~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~~v~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~  266 (545)
T PRK07768        187 AAEFDVETDVMVSWLPLFHDMGMVGFLTVPMYFGAELVKVTPMDFLRDPLLWAELISKYRGTMTAAPNFAYALLARRLRR  266 (545)
T ss_pred             hcCCCCCCceeEEeCCCccchHHHHHHHHHHHCCceEEEeCHHHHHHhHHHHHHHHHHhCCEEEECchHHHHHHHHHHhc
Confidence            3455555 8999999999999997777888999999988764    26778899999999999877777766655432  


Q ss_pred             --CcCCCCCCCceEEeecCCCCCHHHHHHHHHh---CCC--CceeeccccccccccccccccCCC---------------
Q 026609           80 --LVKKFDLSSLKLVGSGAAPLGKELMEECAKN---VPS--ATVIQVGYGLTETSGIATMENSFA---------------  137 (236)
Q Consensus        80 --~~~~~~l~~lr~i~~~G~~~~~~~~~~~~~~---~~~--~~v~~~~YG~tE~g~~~~~~~~~~---------------  137 (236)
                        .....+++++|.++.+|+++++++.+++.+.   ++.  ..+++ .||+||++..++......               
T Consensus       267 ~~~~~~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~-~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~  345 (545)
T PRK07768        267 QAKPGAFDLSSLRFALNGAEPIDPADVEDLLDAGARFGLRPEAILP-AYGMAEATLAVSFSPCGAGLVVDEVDADLLAAL  345 (545)
T ss_pred             cccccCCCchheeeEEeccCCCCHHHHHHHHHHHHhcCCCcccccc-cccccccceEEEccCCCCCcceeeechhHhhcc
Confidence              1123567899999999999999999999874   431  24777 999999987654322110               


Q ss_pred             ---------CCCCCCCccccCCCcEEEEEeCCCCCCCCCCCceEEEEecCccchhhcCCcccccccccCCCeEecCceEE
Q 026609          138 ---------GSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQATKLTIDKKGWVHTGDLGY  208 (236)
Q Consensus       138 ---------~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~g~~Gel~v~~~~~~~~~~~~~~~~~~~~~~~~~~~TgD~~~  208 (236)
                               .......+|+|.++++++++| ++++++++|+.|||+++++.++.+|++++.... ....++||+|||+++
T Consensus       346 ~~~~~~~~~~~~~~~~~G~~~~g~~~~i~~-~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~-~~~~~g~~~TGDl~~  423 (545)
T PRK07768        346 RRAVPATKGNTRRLATLGPPLPGLEVRVVD-EDGQVLPPRGVGVIELRGESVTPGYLTMDGFIP-AQDADGWLDTGDLGY  423 (545)
T ss_pred             CceeccCCCCcceEEeccCCCCCCEEEEEC-CCCCCCCCCCEEEEEEccCcccccccCCCCCcc-cccCCCeeeccceEE
Confidence                     011235789999999999999 678999999999999999999999997654433 334678999999999


Q ss_pred             EcCCCcEEEEcccCCceeeccEEeecCC
Q 026609          209 FDGDGQLYVVDRIKELIKYKGFQVTSNW  236 (236)
Q Consensus       209 ~~~~g~~~~~GR~~d~i~~~G~~i~p~~  236 (236)
                      ++++|.++++||.||+||++|++|+|.|
T Consensus       424 ~~~~g~l~~~GR~~d~i~~~G~~v~~~e  451 (545)
T PRK07768        424 LTEEGEVVVCGRVKDVIIMAGRNIYPTD  451 (545)
T ss_pred             EecCCEEEEEccccceEEECCEecCHHH
Confidence            9999999999999999999999999875

>PRK08162 acyl-CoA synthetase; Validated

Probab=99.97  E-value=3.1e-30  Score=222.85  Aligned_cols=224  Identities=26%  Similarity=0.354  Sum_probs=177.5

Q ss_pred             ccCCCCcEEEEecChhhHHhHHHHHHHHhhcCcEEEEcCCCCHHHHHHHHHhcCceEEEeChHHHHHHHhcCCcCCCCCC
Q 026609            8 TAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLS   87 (236)
Q Consensus         8 ~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~   87 (236)
                      .....+|++++.+|++|..++...++.++. |++.++...+++..+++.++++++|.+.++|+++..|++........+.
T Consensus       218 ~~~~~~~~~l~~~pl~h~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~  296 (545)
T PRK08162        218 WGMPKHPVYLWTLPMFHCNGWCFPWTVAAR-AGTNVCLRKVDPKLIFDLIREHGVTHYCGAPIVLSALINAPAEWRAGID  296 (545)
T ss_pred             cCCCCCCeeEeccCcHhhhhHHHHHHHHHH-ccEEEEeCCCCHHHHHHHHHHcCCeEEEechHHHHHHHhCccccccCCc
Confidence            456678899999999999998555554554 5555555678999999999999999999999999999887554444455


Q ss_pred             CceEEeecCCCCCHHHHHHHHHhCCCCceeeccccccccccccccccCCCC---------CCCCCCccccCC-CcEEEEE
Q 026609           88 SLKLVGSGAAPLGKELMEECAKNVPSATVIQVGYGLTETSGIATMENSFAG---------SRNIGSAGALAP-GVEALIV  157 (236)
Q Consensus        88 ~lr~i~~~G~~~~~~~~~~~~~~~~~~~v~~~~YG~tE~g~~~~~~~~~~~---------~~~~~~~g~p~~-~~~~~~~  157 (236)
                      ..+.++++|+.+++++.+.+.+. + ..+++ .||+||++..+..+.....         .......|.+.+ ...++++
T Consensus       297 ~~~~~~~~g~~~~~~~~~~~~~~-~-~~~~~-~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~  373 (545)
T PRK08162        297 HPVHAMVAGAAPPAAVIAKMEEI-G-FDLTH-VYGLTETYGPATVCAWQPEWDALPLDERAQLKARQGVRYPLQEGVTVL  373 (545)
T ss_pred             cceEEEECCCCCCHHHHHHHHHh-C-Cceee-cccccccCcceeecccccccccCCccchhhccCCCCcccCCcceEEEE
Confidence            67778899999999999988765 4 88888 9999998654443211100         011234455544 3357788


Q ss_pred             eCCCCCCCCC-C-CceEEEEecCccchhhcCCcccccccccCCCeEecCceEEEcCCCcEEEEcccCCceeeccEEeecC
Q 026609          158 SVDTQKPLPP-N-QLGEIWLRGPNMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSN  235 (236)
Q Consensus       158 ~~~~~~~~~~-g-~~Gel~v~~~~~~~~~~~~~~~~~~~~~~~~~~~TgD~~~~~~~g~~~~~GR~~d~i~~~G~~i~p~  235 (236)
                      |++++++++. | +.|||+++++.++.+|+++++.+...| .++||+|||+++++++|.++++||.||++|++|++|+|.
T Consensus       374 d~~~~~~~~~~g~~~Gel~v~g~~~~~gY~~~~~~~~~~~-~~g~~~TGDl~~~d~dg~l~~~GR~~~~i~~~G~~v~~~  452 (545)
T PRK08162        374 DPDTMQPVPADGETIGEIMFRGNIVMKGYLKNPKATEEAF-AGGWFHTGDLAVLHPDGYIKIKDRSKDIIISGGENISSI  452 (545)
T ss_pred             cCCCCcccCCCCCceeEEEEecCcchhhhcCChhhhHHHh-hCCCcccCceEEEcCCccEEEEecccceEEeCCEEECHH
Confidence            8778888876 3 469999999999999999999998887 678999999999999999999999999999999999986


Q ss_pred             C
Q 026609          236 W  236 (236)
Q Consensus       236 ~  236 (236)
                      |
T Consensus       453 e  453 (545)
T PRK08162        453 E  453 (545)
T ss_pred             H
Confidence            4

>PRK07798 acyl-CoA synthetase; Validated

Probab=99.97  E-value=7.5e-30  Score=219.63  Aligned_cols=218  Identities=22%  Similarity=0.263  Sum_probs=180.3

Q ss_pred             CCCcEEEEecChhhHHhHHHHHHHHhhcCcEEEEcC--CCCHHHHHHHHHhcCceEEEeChHHHHH-HHhcCC-cCCCCC
Q 026609           11 ELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA--KFDLEMFLRAIEKHRVTHIWVVPPLILA-LAKHGL-VKKFDL   86 (236)
Q Consensus        11 ~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~--~~~~~~~~~~i~~~~~t~~~~~P~~~~~-l~~~~~-~~~~~l   86 (236)
                      ..+++++..+|++|.+++ ..++.+++.|+++++.+  .+++..+++.++++++|.+.++|+.+.. +.+... .....+
T Consensus       217 ~~~~~~~~~~pl~~~~~~-~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~~~~~~~~l~~~~~~~~~~~~  295 (533)
T PRK07798        217 GPGMRRFPAPPLMHGAGQ-WAAFAALFSGQTVVLLPDVRFDADEVWRTIEREKVNVITIVGDAMARPLLDALEARGPYDL  295 (533)
T ss_pred             CCCceEEEecchhhhhhH-HHHHHHHhcCceEEEecCCCcCHHHHHHHHHHhCCeEEEechHHHHHHHHHHhcccccCCC
Confidence            567899999999999999 57889999999999998  7899999999999999999999876543 333322 234567


Q ss_pred             CCceEEeecCCCCCHHHHHHHHHhCCCCceeeccccccccccccccccCCCCCCCCCCc--cccCCCcEEEEEeCCCCCC
Q 026609           87 SSLKLVGSGAAPLGKELMEECAKNVPSATVIQVGYGLTETSGIATMENSFAGSRNIGSA--GALAPGVEALIVSVDTQKP  164 (236)
Q Consensus        87 ~~lr~i~~~G~~~~~~~~~~~~~~~~~~~v~~~~YG~tE~g~~~~~~~~~~~~~~~~~~--g~p~~~~~~~~~~~~~~~~  164 (236)
                      +++|.++++|+++++++.++|.+.+++..+++ .||+||++.+.......    .....  +.+.++..++++| +++++
T Consensus       296 ~~l~~i~~gG~~~~~~~~~~~~~~~~~~~~~~-~YG~tE~~~~~~~~~~~----~~~~~g~~~~~~~~~~~i~~-~~~~~  369 (533)
T PRK07798        296 SSLFAIASGGALFSPSVKEALLELLPNVVLTD-SIGSSETGFGGSGTVAK----GAVHTGGPRFTIGPRTVVLD-EDGNP  369 (533)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHcCCCeEEe-eecccccccccccCCCC----CCccCCCCccCCCceEEEEC-CCCCC
Confidence            89999999999999999999999997688888 99999997665543211    11122  3788899999999 46779


Q ss_pred             CCCCCc--eEEEEecCccchhhcCCcccccccccC---CCeEecCceEEEcCCCcEEEEcccCCceeeccEEeecCC
Q 026609          165 LPPNQL--GEIWLRGPNMMRGYYNNEQATKLTIDK---KGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSNW  236 (236)
Q Consensus       165 ~~~g~~--Gel~v~~~~~~~~~~~~~~~~~~~~~~---~~~~~TgD~~~~~~~g~~~~~GR~~d~i~~~G~~i~p~~  236 (236)
                      ++.|+.  |+++. ++.++.+|+++++.+...|..   .+||+|||+++++++|++++.||.||+++.+|++|+|+|
T Consensus       370 ~~~g~~~~g~l~~-~~~~~~gy~~~~~~t~~~f~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~~~i~~~G~~v~~~e  445 (533)
T PRK07798        370 VEPGSGEIGWIAR-RGHIPLGYYKDPEKTAETFPTIDGVRYAIPGDRARVEADGTITLLGRGSVCINTGGEKVFPEE  445 (533)
T ss_pred             CCCCCCCeeEEEe-ecCccccccCChhhhHHhhccCCCCceEEcCcEEEEcCCCcEEEEccccceEecCCEEeCHHH
Confidence            999988  77765 557899999999888777632   359999999999999999999999999999999999875

>PRK08308 acyl-CoA synthetase; Validated

Probab=99.97  E-value=3.1e-29  Score=209.76  Aligned_cols=194  Identities=20%  Similarity=0.240  Sum_probs=165.8

Q ss_pred             eeccCCCCcEEEEecChhhHHhHHHHHHHHhhcCcEEEEcCCCCHHHHHHHHHhcCceEEEeChHHHHHHHhcCCcCCCC
Q 026609            6 QETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFD   85 (236)
Q Consensus         6 ~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~   85 (236)
                      +.+....+|+++..+|++|.+|+...++.++..|+++++.+.+++..+++.++++++|.+.++|+.+..|.+....    
T Consensus       135 ~~~~~~~~~~~~~~~p~~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~----  210 (414)
T PRK08308        135 EALNCEQDETPIVACPVTHSYGLICGVLAALTRGSKPVIITNKNPKFALNILRNTPQHILYAVPLMLHILGRLLPG----  210 (414)
T ss_pred             HhhCCCcccEEEEecCcHHHHHHHHHHHHHHHcCCEEEecCCCCHHHHHHHHHHhCCeEEEcCHHHHHHHHhcCCc----
Confidence            3456778899999999999999978899999999999999989999999999999999999999999999876432    


Q ss_pred             CCCceEEeecCCCCCHHHHHHHHHhCCCCceeeccccccccccccccccCCCCCCCCCCccccCCCcEEEEEeCCCCCCC
Q 026609           86 LSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPL  165 (236)
Q Consensus        86 l~~lr~i~~~G~~~~~~~~~~~~~~~~~~~v~~~~YG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~  165 (236)
                      ..++|.++.+|+++++++.+.|++..  ..+++ .||+||++.+....  .  ......+|+|++++++++.+.      
T Consensus       211 ~~~l~~~~~~G~~l~~~~~~~~~~~~--~~~~~-~YG~tE~~~~~~~~--~--~~~~~~~G~p~~~~~~~~~~~------  277 (414)
T PRK08308        211 TFQFHAVMTSGTPLPEAWFYKLRERT--TYMMQ-QYGCSEAGCVSICP--D--MKSHLDLGNPLPHVSVSAGSD------  277 (414)
T ss_pred             cccccEEEEccCCCCHHHHHHHHHhC--Chhhh-ccCccccCCeeecC--C--CCCCCccCccCCCeEEEEecC------
Confidence            13688999999999999999999873  57888 99999998654321  1  234567899999999988752      


Q ss_pred             CCCCceEEEEecCccchhhcCCcccccccccCCCeEecCceEEEcCCCcEEEEcccCCceeeccEEeecCC
Q 026609          166 PPNQLGEIWLRGPNMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSNW  236 (236)
Q Consensus       166 ~~g~~Gel~v~~~~~~~~~~~~~~~~~~~~~~~~~~~TgD~~~~~~~g~~~~~GR~~d~i~~~G~~i~p~~  236 (236)
                       .++.||+++++                   .++||+|||+++++++|++++.||.||+||++|++|+|.|
T Consensus       278 -~~~~gel~v~~-------------------~~~~~~TGDl~~~~~dg~l~~~GR~~~~ik~~G~~v~p~e  328 (414)
T PRK08308        278 -ENAPEEIVVKM-------------------GDKEIFTKDLGYKSERGTLHFMGRMDDVINVSGLNVYPIE  328 (414)
T ss_pred             -CCCCceEEEEc-------------------CCceEECCceEEECCCccEEEecccCCeEEECCEEECHHH
Confidence             35679999975                   3579999999999999999999999999999999999975

>PRK09029 O-succinylbenzoic acid--CoA ligase; Provisional

Probab=99.97  E-value=2e-29  Score=213.54  Aligned_cols=201  Identities=29%  Similarity=0.443  Sum_probs=168.4

Q ss_pred             eeeccCCCCcEEEEecChhhHHhHHHHHHHHhhcCcEEEEcCCCCHHHHHHHHHhcCceEEEeChHHHHHHHhcCCcCCC
Q 026609            5 DQETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKF   84 (236)
Q Consensus         5 ~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~   84 (236)
                      ...++..++|+++..+|++|.+|+ ..++.++..|+++++.+.   ..+++.+.  +++.+..+|+++..++.....   
T Consensus       168 ~~~~~~~~~~~~l~~~p~~h~~g~-~~~~~~l~~G~~v~~~~~---~~~~~~i~--~~t~~~~~P~~~~~l~~~~~~---  238 (458)
T PRK09029        168 LSLMPFTAQDSWLLSLPLFHVSGQ-GIVWRWLYAGATLVVRDK---QPLEQALA--GCTHASLVPTQLWRLLDNRSE---  238 (458)
T ss_pred             hhcCCCCccceEEEecCcHhhhhh-HHHHHHHhCCceEEeCCh---HHHHHHHh--hceeeecChHHHHHHHhcccc---
Confidence            345667888999999999999998 567788999999999774   55677774  789999999999999876542   


Q ss_pred             CCCCceEEeecCCCCCHHHHHHHHHhCCCCceeeccccccccccccccccCCCCCCCCCCccccCCCcEEEEEeCCCCCC
Q 026609           85 DLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKP  164 (236)
Q Consensus        85 ~l~~lr~i~~~G~~~~~~~~~~~~~~~~~~~v~~~~YG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~  164 (236)
                       ..++|.+++||+++++.+.+.+.+.  +..+++ .||+||++........    .....+|+|++++.+++++      
T Consensus       239 -~~~l~~i~~gG~~~~~~~~~~~~~~--g~~~~~-~YG~tE~~~~~~~~~~----~~~~~~G~~~~~~~~~i~~------  304 (458)
T PRK09029        239 -PLSLKAVLLGGAAIPVELTEQAEQQ--GIRCWC-GYGLTEMASTVCAKRA----DGLAGVGSPLPGREVKLVD------  304 (458)
T ss_pred             -CCcceEEEECCCCCCHHHHHHHHHc--CCcEec-cccccccCcceeccCC----CCCCCCCCCCCCCEEEEeC------
Confidence             3479999999999999999988765  488888 9999999875543221    1234589999999999986      


Q ss_pred             CCCCCceEEEEecCccchhhcCCcccccccccCCCeEecCceEEEcCCCcEEEEcccCCceeeccEEeecCC
Q 026609          165 LPPNQLGEIWLRGPNMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSNW  236 (236)
Q Consensus       165 ~~~g~~Gel~v~~~~~~~~~~~~~~~~~~~~~~~~~~~TgD~~~~~~~g~~~~~GR~~d~i~~~G~~i~p~~  236 (236)
                            |||+++|+.++.+|+++++.+.... .++||+|||+++++ +|.+++.||+||+||++|++|+|.|
T Consensus       305 ------gel~v~g~~~~~gY~~~~~~~~~~~-~~~~~~TGD~~~~~-~g~l~~~gR~~d~i~~~G~~v~p~e  368 (458)
T PRK09029        305 ------GEIWLRGASLALGYWRQGQLVPLVN-DEGWFATRDRGEWQ-NGELTILGRLDNLFFSGGEGIQPEE  368 (458)
T ss_pred             ------CEEEEecCceeeeeecCcccccccc-CCCccCCCCcEEEe-CCEEEEecccccceeeCCEEeCHHH
Confidence                  8999999999999999887765443 67899999999998 9999999999999999999999975

>PRK07824 O-succinylbenzoic acid--CoA ligase; Provisional

Probab=99.96  E-value=5.2e-28  Score=198.75  Aligned_cols=193  Identities=27%  Similarity=0.406  Sum_probs=160.9

Q ss_pred             CCcEEEEecChhhHHhHHHHHHHHhhcCcEEEEc---CCCCHHHHHHHHHhcC--ceEEEeChHHHHHHHhcCCcCCCCC
Q 026609           12 LDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILM---AKFDLEMFLRAIEKHR--VTHIWVVPPLILALAKHGLVKKFDL   86 (236)
Q Consensus        12 ~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~---~~~~~~~~~~~i~~~~--~t~~~~~P~~~~~l~~~~~~~~~~l   86 (236)
                      ..++++..+|++|.+|+ ..++.++..|+++++.   +.+++..+++.+++++  .++...+|+.+..++.... ....+
T Consensus        73 ~~~~~~~~~p~~~~~g~-~~~~~~l~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~p~~l~~~~~~~~-~~~~~  150 (358)
T PRK07824         73 GPGQWLLALPAHHIAGL-QVLVRSVIAGSEPVELDVSAGFDPTALPRAVAELGGGRRYTSLVPMQLAKALDDPA-ATAAL  150 (358)
T ss_pred             CCCeEEEECChHHHHHH-HHHHHHHHcCCeEEecCcCCCcCHHHHHHHHHHhCCCceEEEecHHHHHHHHhCcc-ccCCc
Confidence            45788999999999999 5677888889988873   3578999999999998  5566778888877776543 23467


Q ss_pred             CCceEEeecCCCCCHHHHHHHHHhCCCCceeeccccccccccccccccCCCCCCCCCCccccCCCcEEEEEeCCCCCCCC
Q 026609           87 SSLKLVGSGAAPLGKELMEECAKNVPSATVIQVGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLP  166 (236)
Q Consensus        87 ~~lr~i~~~G~~~~~~~~~~~~~~~~~~~v~~~~YG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~  166 (236)
                      +++|.++++|+++++++.+.+.+.  +..+.+ .||+||++..+.            ..|.|.+++++++.+        
T Consensus       151 ~~l~~i~~gG~~l~~~~~~~~~~~--~~~v~~-~YG~TE~~~~~~------------~~G~~~~g~~v~i~~--------  207 (358)
T PRK07824        151 AELDAVLVGGGPAPAPVLDAAAAA--GINVVR-TYGMSETSGGCV------------YDGVPLDGVRVRVED--------  207 (358)
T ss_pred             ccceEEEECCCCCCHHHHHHHHhc--CCcEEe-cccCCccCCCcC------------cCceeCCCCEEEecC--------
Confidence            899999999999999999988864  488888 999999875432            247899999998843        


Q ss_pred             CCCceEEEEecCccchhhcCCcccccccccCCCeEecCceEEEcCCCcEEEEcccCCceeeccEEeecCC
Q 026609          167 PNQLGEIWLRGPNMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSNW  236 (236)
Q Consensus       167 ~g~~Gel~v~~~~~~~~~~~~~~~~~~~~~~~~~~~TgD~~~~~~~g~~~~~GR~~d~i~~~G~~i~p~~  236 (236)
                          |||+++|+.++.+|+++++..  .+..++||+|||++++ ++|.+++.||.||+||++|++|+|.|
T Consensus       208 ----Gei~v~g~~~~~gY~~~~~~~--~~~~~g~~~TGDl~~~-~~g~l~i~GR~~d~i~~~G~~v~p~e  270 (358)
T PRK07824        208 ----GRIALGGPTLAKGYRNPVDPD--PFAEPGWFRTDDLGAL-DDGVLTVLGRADDAISTGGLTVLPQV  270 (358)
T ss_pred             ----CEEEEecCccccccCCCcccc--cccCCCceecccEEEE-eCCEEEEEeccCCeEEECCEEECHHH
Confidence                899999999999999887643  3445789999999999 89999999999999999999999975

>TIGR02155 PA_CoA_ligase phenylacetate-CoA ligase

Probab=99.96  E-value=4.4e-28  Score=203.24  Aligned_cols=211  Identities=18%  Similarity=0.153  Sum_probs=162.1

Q ss_pred             ccCCCCcEEEEecChhhHHhHHHHHHHHhhcCcEEEEcCCCCHHHHHHHHHhcCceEEEeChHHHHHHHhcCCcCCCC--
Q 026609            8 TAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFD--   85 (236)
Q Consensus         8 ~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~--   85 (236)
                      .+..++|++++..++.+..+.....+.++..|++++..+..++..+++.|++++++++.++|+++..|++.......+  
T Consensus       114 ~g~~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~l~~L~~~~~~~~~~~~  193 (422)
T TIGR02155       114 AGGRPGDLIHNAYGYGLFTGGLGAHYGAEKLGCTVVPISGGQTEKQVQLIQDFKPDIIMVTPSYMLNLLEELKRMGIDPA  193 (422)
T ss_pred             cCCCCCcEEEEccCccccchhHHHHHHHHHcCcEEEecCCCCHHHHHHHHHHHCCCEEEEcHHHHHHHHHHHHHcCCCcc
Confidence            467889999988776654444344566788899998887777899999999999999999999999998765433322  


Q ss_pred             CCCceEEeecCCCCCHHHHHHHHHhCCCCceeeccccccccccccccccCCCCCCCCCCccccCCCcEEEEEeCCCCCCC
Q 026609           86 LSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPL  165 (236)
Q Consensus        86 l~~lr~i~~~G~~~~~~~~~~~~~~~~~~~v~~~~YG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~  165 (236)
                      ..++|.++++||++++++.+.+.+.|+ +.+.+ .||+||++.......+..  ...+ ...+.+.+.++++|+++++++
T Consensus       194 ~~~lr~i~~~ge~l~~~~~~~i~~~~g-~~v~~-~YG~tE~~~~~~~~~~~~--~~~g-~~~~~~~~~~eivd~~~g~~v  268 (422)
T TIGR02155       194 QTSLQVGIFGAEPWTNAMRKEIEARLG-MKATD-IYGLSEVIGPGVAMECVE--TQDG-LHIWEDHFYPEIIDPHTGEVL  268 (422)
T ss_pred             cCceEEEEEeCCcCCHHHHHHHHHHhC-CceEe-cccchhhcCCceeecccc--cCCC-ceEecCeeEEEEECCCCCCCC
Confidence            358999999999999999999999997 88988 999999853211111110  1111 112234677889997789999


Q ss_pred             CCCCceEEEEecCccchhhcCCcccccccccCCCeEecCceEEEcCC-C-----cEEEEcccCCceeeccEEeecCC
Q 026609          166 PPNQLGEIWLRGPNMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGD-G-----QLYVVDRIKELIKYKGFQVTSNW  236 (236)
Q Consensus       166 ~~g~~Gel~v~~~~~~~~~~~~~~~~~~~~~~~~~~~TgD~~~~~~~-g-----~~~~~GR~~d~i~~~G~~i~p~~  236 (236)
                      ++|+.|||++++..            ...+ +.+||+|||+++++++ |     .+++.||.||+|+++|.+|+|.|
T Consensus       269 ~~Ge~Gelvvt~~~------------~~~~-p~~ry~TGDl~~~~~~~Gr~~~~~~~i~GR~~d~i~~~G~~v~p~e  332 (422)
T TIGR02155       269 PDGEEGELVFTTLT------------KEAL-PVIRYRTRDLTRLLPGTARTMRRMDRITGRSDDMLIIRGVNVFPTQ  332 (422)
T ss_pred             CCCCeeEEEEecCC------------cccc-ceeeEEcCcEEEEECCCCCcccccccccCccCCeEEECCEEECHHH
Confidence            99999999998742            1222 5679999999999775 4     36899999999999999999964

Phenylacetate-CoA ligase (PA-CoA ligase) catalyzes the first step in aromatic catabolism of phenylacetic acid (PA) into phenylacetyl-CoA (PA-CoA). Often located in a conserved gene cluster with enzymes involved in phenylacetic acid activation (paaG/H/I/J), phenylacetate-CoA ligase has been found among the proteobacteria as well as in gram positive prokaryotes. In the B-subclass proteobacterium Azoarcus evansii, phenylacetate-CoA ligase has been shown to be induced under aerobic and anaerobic growth conditions. It remains unclear however, whether this induction is due to the same enzyme or to another isoenzyme restricted to specific anaerobic growth conditions.

>KOG1180 consensus Acyl-CoA synthetase [Lipid transport and metabolism]

Probab=99.96  E-value=2.8e-28  Score=198.97  Aligned_cols=221  Identities=30%  Similarity=0.417  Sum_probs=178.9

Q ss_pred             cCCCCcEEEEecChhhHHhHHHHHHHHhhcCcEEEEcCCC---CHH-HHH----HHHHhcCceEEEeChHHHHHHHhcCC
Q 026609            9 AGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKF---DLE-MFL----RAIEKHRVTHIWVVPPLILALAKHGL   80 (236)
Q Consensus         9 ~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~---~~~-~~~----~~i~~~~~t~~~~~P~~~~~l~~~~~   80 (236)
                      .+.+.|+++..+|+.|..-+.+. +.+++.|+++-..++.   |.. .+.    --+..+++|.+.++|..+.++.+.-.
T Consensus       275 ~lg~~D~yi~yLPLAHIlEl~aE-~~~ft~G~~iGY~S~~TLtdts~ki~kg~kGD~~~lkPTiM~~VpAV~drVrKgVl  353 (678)
T KOG1180|consen  275 ELGPKDRYIAYLPLAHILELTAE-LVCFTWGGRIGYSSPLTLTDTSSKIKKGCKGDLTELKPTIMAAVPAVMDRVRKGVL  353 (678)
T ss_pred             ccCCCceEEEechHHHHHHHHHH-HHHHhhCCEeecCCcceecccchhhccCCcCccccccchhhhhhHHHHHHHHHHHH
Confidence            67788999999999999999665 5789999999887642   211 121    13467889999999988875533100


Q ss_pred             ------------------------cC--C----------------CCCCCceEEeecCCCCCHHHHHHHHHhCCCCceee
Q 026609           81 ------------------------VK--K----------------FDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQ  118 (236)
Q Consensus        81 ------------------------~~--~----------------~~l~~lr~i~~~G~~~~~~~~~~~~~~~~~~~v~~  118 (236)
                                              .+  .                ..--++|++++||++++++..+.+.-.+. +++..
T Consensus       354 ~kV~~~~~~~k~lF~~aY~~K~~~~~~~g~~s~~ld~lVFkKIr~~lGG~lR~~LsGGapLS~dtQrF~nic~C-~Pv~q  432 (678)
T KOG1180|consen  354 SKVNAMPGLQKKLFWTAYERKLSLIERNGPGSPLLDALVFKKIRALLGGNLRYILSGGAPLSPDTQRFMNICFC-CPVLQ  432 (678)
T ss_pred             HHHhhchHHHHHHHHHHHHHHHHHHhccCCchhhHHHHHHHHHHHHhCCceEEEEeCCCCCCHHHHHHHHHhcc-ccccc
Confidence                                    00  0                00128999999999999999887777775 79999


Q ss_pred             ccccccccccccccccCCCCCCCCCCccccCCCcEEEEEeCCCCCCCCCCC--ceEEEEecCccchhhcCCccccccccc
Q 026609          119 VGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQ--LGEIWLRGPNMMRGYYNNEQATKLTID  196 (236)
Q Consensus       119 ~~YG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~g~--~Gel~v~~~~~~~~~~~~~~~~~~~~~  196 (236)
                       .||.||++.-++.....  +...+.+|.|++-++++++|-+++.=.+.+.  +|||+|+|+.+..+|+++++.+...|.
T Consensus       433 -GYGLTEtca~~tv~e~~--d~~~g~vG~pl~c~eiKLvdw~EgGY~~~~~PPrGEI~i~G~~vt~gY~kn~ekT~e~ft  509 (678)
T KOG1180|consen  433 -GYGLTETCAAATVLEPE--DFSTGRVGAPLPCCEIKLVDWEEGGYFAKNKPPRGEILIGGPNVTMGYYKNEEKTKEDFT  509 (678)
T ss_pred             -cccccchhcccEecChh--hcccccccCCccceEEEEEEhhhcCccCCCCCCCceEEecCCccChhhhCChhhhhhhce
Confidence             99999988777665544  4455689999999999999977776666666  799999999999999999999999997


Q ss_pred             C-CC--eEecCceEEEcCCCcEEEEcccCCceee-ccEEeec
Q 026609          197 K-KG--WVHTGDLGYFDGDGQLYVVDRIKELIKY-KGFQVTS  234 (236)
Q Consensus       197 ~-~~--~~~TgD~~~~~~~g~~~~~GR~~d~i~~-~G~~i~p  234 (236)
                      . +|  ||+|||+|.+.+||++.++.|++|++|+ +|+.|+-
T Consensus       510 ~~~G~~WF~TGDIGe~~pdG~LkIIDRKKdLVKlq~GEYIsL  551 (678)
T KOG1180|consen  510 VEDGQRWFRTGDIGEFHPDGCLKIIDRKKDLVKLQNGEYISL  551 (678)
T ss_pred             ecCCcEEEeccccceecCCCcEEEeechhhhhhhcccceeeh
Confidence            7 78  9999999999999999999999999999 8998863

>KOG1179 consensus Very long-chain acyl-CoA synthetase/fatty acid transporter [Lipid transport and metabolism]

Probab=99.95  E-value=1e-26  Score=190.34  Aligned_cols=228  Identities=22%  Similarity=0.235  Sum_probs=182.5

Q ss_pred             eeccCCCCcEEEEecChhhHHhHHHHHHHHhhcCcEEEEcCCCCHHHHHHHHHhcCceEEEeChHHHHHHHhcCCcCCCC
Q 026609            6 QETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFD   85 (236)
Q Consensus         6 ~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~   85 (236)
                      +.++.+++|++..++|+||++|.+..+.+++..|+|+++..+|++.++|+-+.++++|++...-.+.+.|++++......
T Consensus       276 ~~~g~~~~DvvY~~lPLYHsaa~ilGi~~~l~~GaT~VlrkKFSAS~FW~DC~k~~~Tv~QYIGElcRYLl~~p~~~~er  355 (649)
T KOG1179|consen  276 YVFGMTADDVVYTTLPLYHSAAGILGIGGCLLHGATVVLRKKFSASNFWDDCRKYNVTVIQYIGELCRYLLNQPPSPEER  355 (649)
T ss_pred             HHhCCCccceEEEcchhHHHHHHHHHHHHHHhcCceEEEecccchhhhHHHHHHhCCeeeehHHHHHHHHHcCCCChhhc
Confidence            45789999999999999999999999999999999999999999999999999999999999999999999988765555


Q ss_pred             CCCceEEeecCCCCCHHHHHHHHHhCCCCceeeccccccccccccccc-cCCCCCCCCCCccccCCCcEEEEEeCCCCCC
Q 026609           86 LSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVGYGLTETSGIATME-NSFAGSRNIGSAGALAPGVEALIVSVDTQKP  164 (236)
Q Consensus        86 l~~lr~i~~~G~~~~~~~~~~~~~~~~~~~v~~~~YG~tE~g~~~~~~-~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~  164 (236)
                      -..+|..+  |.-+.+++++.|.++|+..+|.+ .||+||...-.... ....+....+...+-+..+++.-+|++++++
T Consensus       356 ~HkVRla~--GNGLR~diW~~Fv~RFg~~~IgE-~YgaTEgn~~~~N~d~~vGA~G~~~~~~~~l~p~~LIk~D~~t~E~  432 (649)
T KOG1179|consen  356 QHKVRLAY--GNGLRPDIWQQFVKRFGIIKIGE-FYGATEGNSNLVNYDGRVGACGFMSRLLKLLYPFRLIKVDPETGEP  432 (649)
T ss_pred             CceEEEEe--cCCCCchHHHHHHHHcCCCeEEE-EeccccCcceeeeecCccccccchhhhhhhccceEEEEecCCCCce
Confidence            55666665  78899999999999999777888 99999986544332 1111222222233334445555566667764


Q ss_pred             ----------CCCCCceEEE--EecCcc---chhhcCCcccccccc------cCCCeEecCceEEEcCCCcEEEEcccCC
Q 026609          165 ----------LPPNQLGEIW--LRGPNM---MRGYYNNEQATKLTI------DKKGWVHTGDLGYFDGDGQLYVVDRIKE  223 (236)
Q Consensus       165 ----------~~~g~~Gel~--v~~~~~---~~~~~~~~~~~~~~~------~~~~~~~TgD~~~~~~~g~~~~~GR~~d  223 (236)
                                |++|++|.++  |.....   +.||.++.+.+....      ..|-||.|||+-..|+.|.++|..|+.|
T Consensus       433 iRd~~G~Ci~~~~GEpGlLv~~i~~k~P~~~F~GY~g~~~~t~kKl~rDVFkkGD~~f~tGDlLv~D~~GylYF~DRtGD  512 (649)
T KOG1179|consen  433 IRDSQGLCIPCPPGEPGLLVGKIVQKNPLRSFLGYAGPKKATEKKLLRDVFKKGDVYFNTGDLLVADELGYLYFKDRTGD  512 (649)
T ss_pred             eecCCceEEECCCCCCceEEEEeccCCchhhhccccCchhhhhhhhHHhhhccCcEEEeeCcEEEEecCCcEEEeccCCC
Confidence                      6789999775  344444   889998666665443      2344999999999999999999999999


Q ss_pred             ceeeccEEeecCC
Q 026609          224 LIKYKGFQVTSNW  236 (236)
Q Consensus       224 ~i~~~G~~i~p~~  236 (236)
                      .+...|+||+.+|
T Consensus       513 TFRWKGENVsTtE  525 (649)
T KOG1179|consen  513 TFRWKGENVSTTE  525 (649)
T ss_pred             ceeecCCcccHHH
Confidence            9999999999876

>TIGR02372 4_coum_CoA_lig 4-coumarate--CoA ligase, photoactive yellow protein activation family

Probab=99.92  E-value=1.1e-23  Score=173.83  Aligned_cols=175  Identities=20%  Similarity=0.213  Sum_probs=137.3

Q ss_pred             CcEEEEecChhhHHhHHHHHHHHhhcCcEEEEcCCCCHHHHHHHHHhcCceEEEeChHHHHHHHhcCCcCCCCCCCceEE
Q 026609           13 DYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSSLKLV   92 (236)
Q Consensus        13 ~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i   92 (236)
                      .|++++.+|++|.+|+...++.++..|+++++.+++++..+++.++..  ++++++|++++.|.+..    ..++++|. 
T Consensus       138 ~dr~l~~~Pl~h~~g~~~~~l~~l~~G~~vv~~~~~~~~~~l~~i~~~--t~~~~~P~~l~~l~~~~----~~l~slr~-  210 (386)
T TIGR02372       138 VRRVISCVPAHHLYGFLFSCLLPSRRGLEAKQLAAAPASGIMRHARPG--DLIVGTPFIWEQLADLD----YRLPGVVG-  210 (386)
T ss_pred             CCeEEEeCCcHHHHHHHHHHHHHHHCCCeEEecCCCChHHHHHhhccC--CEEEECcHHHHHHHhhC----cCCCccee-
Confidence            368999999999999877888899999999998888988888888754  78899999999997653    34667776 


Q ss_pred             eecCCCCCHHHHHHHHHhCCCCceeeccccccccccccccccCCCCCCCCCCccccCCCcEEEEEeCCCCCCCCCCCceE
Q 026609           93 GSGAAPLGKELMEECAKNVPSATVIQVGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGE  172 (236)
Q Consensus        93 ~~~G~~~~~~~~~~~~~~~~~~~v~~~~YG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~g~~Ge  172 (236)
                      +++|+++++++++.+.+. +...+.+ .||+||++.++....       +...++|+|++++.+ +  ++..        
T Consensus       211 i~gGa~l~~~l~~~~~~~-g~~~v~~-~YG~TEt~~i~~~~~-------~~~~~~~~p~~~~~~-~--~~~~--------  270 (386)
T TIGR02372       211 VSSGAPSTAATWRCLLAA-GLARLLE-VYGATETGGIGLREA-------PDDPFRLLPDLACFA-D--TLSS--------  270 (386)
T ss_pred             EecCCCCCHHHHHHHHHh-cccchhh-eeccccccccccccC-------CCCCcccCCCccccC-C--CccC--------
Confidence            678999999999999886 3246777 999999987655321       123456777766532 1  1110        


Q ss_pred             EEEecCccchhhcCCcccccccccCCCeEecCceEEEcCCCcEEEEcccCCceeeccEEeecCC
Q 026609          173 IWLRGPNMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSNW  236 (236)
Q Consensus       173 l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~TgD~~~~~~~g~~~~~GR~~d~i~~~G~~i~p~~  236 (236)
                         .+                   ...|++|||+++++++|++++.||+||+||++|+||+|.|
T Consensus       271 ---~g-------------------~~~~~~tgD~g~~d~~G~l~i~GR~dd~Ik~~G~~V~p~e  312 (386)
T TIGR02372       271 ---AG-------------------LARRLDLQDRLAWDKDGGFTILGRKDEILQVGGVNVSPGH  312 (386)
T ss_pred             ---CC-------------------ccceeecCceEEEcCCCcEEEecccCCEEEECCEEEcHHH
Confidence               01                   1125899999999999999999999999999999999975

Ectothiorhodospira halophila. This enzyme is designated 6.2.1.12 and therefore joins a number of plant enzymes linked to lignin biosynthesis and given similar names.

>TIGR03335 F390_ftsA coenzyme F390 synthetase

Probab=99.91  E-value=2.8e-23  Score=174.97  Aligned_cols=208  Identities=18%  Similarity=0.060  Sum_probs=153.7

Q ss_pred             ccCCCCcEEEEecChhhHHhHHHHHHHHhhcCcEEEEcCCCCHHHHHHHHHhcCceEEEeChHHHHHHHhcCCcCCC--C
Q 026609            8 TAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKF--D   85 (236)
Q Consensus         8 ~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~--~   85 (236)
                      .+..++|+++.+.|+.+..+.....++++..|++++....  ....++.+++++++.+.++|+.+..|.+.......  .
T Consensus       125 ~G~~~gD~vl~~~~~~~~~g~~~~~~~~~~~Ga~vi~~~~--~~~~~~~i~~~~~t~l~~~ps~ll~La~~~~~~g~~~~  202 (445)
T TIGR03335       125 QGFTAGDRMVICASYGMNVGANTMTLAAREVGMSIIPEGK--CTFPIRIIESYRPTGIVASVFKLLRLARRMKAEGIDPA  202 (445)
T ss_pred             cCCCCCCeEEEEecCCcchhHHHHHHHHHHcCCEEEcCCc--hhHHHHHHHHhCCCEEEECHHHHHHHHHHHHHcCCCcc
Confidence            3778899999999988877764555677888988765443  34568999999999999999988888765433322  2


Q ss_pred             CCCceEEeecCCCCCHHHHHHHHHhCCCCceeeccccccccccccccccCCCCCCCCCCccccCCCcEEEEEeCCCCCCC
Q 026609           86 LSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPL  165 (236)
Q Consensus        86 l~~lr~i~~~G~~~~~~~~~~~~~~~~~~~v~~~~YG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~  165 (236)
                      ..++|.++++||++++++.+.+.+.|+ +.+++ .||+||++. +..+..     . .....+-+.+.++++|++++.++
T Consensus       203 ~~~lr~ii~gGE~l~~~~r~~ie~~~g-~~v~~-~YG~TE~~~-~~~c~~-----~-~g~h~~~d~~~vEIvDp~~~~~v  273 (445)
T TIGR03335       203 ESSIRRLVVGGESFADESRNYVEELWG-CEVYN-TYGSTEGTM-CGECQA-----V-AGLHVPEDLVHLDVYDPRHQRFL  273 (445)
T ss_pred             cCcceEEEEcCCCCCHHHHHHHHHHhC-CcEEe-cCChhhhhh-eEEecC-----C-CCccccCCceEEEEEcCCCCCCC
Confidence            368999999999999999999999997 88999 999999863 222211     1 11233445678999998888999


Q ss_pred             CCCCceEEEEecCccchhhcCCcccccccccCCCeEecCceEEEc-CCCc--------EEEEcccCCceeeccEEeecC
Q 026609          166 PPNQLGEIWLRGPNMMRGYYNNEQATKLTIDKKGWVHTGDLGYFD-GDGQ--------LYVVDRIKELIKYKGFQVTSN  235 (236)
Q Consensus       166 ~~g~~Gel~v~~~~~~~~~~~~~~~~~~~~~~~~~~~TgD~~~~~-~~g~--------~~~~GR~~d~i~~~G~~i~p~  235 (236)
                      ++|+.|||++++-....        .... ++--.|+|||+++.. ++.+        +...||.||+++++|.+|+|+
T Consensus       274 p~Ge~GELvvT~L~~~~--------~r~~-~PliRYrtgD~~~~~~~~~C~CGr~~~r~~~~gR~dd~~~~~g~~~~p~  343 (445)
T TIGR03335       274 PDGECGRIVLTTLLKPG--------ERCG-SLLINYDTEDTTVVISRDRCPCGRTHMRILNPEREAETIWISGVPFNRV  343 (445)
T ss_pred             cCCCceEEEEEecCCCC--------ccCC-ceEEEeecCceEEEecCCCCCCCCCcceeCCCcccCceEEECCEEeCHH
Confidence            99999999998743210        0000 022259999999863 2211        445699999999999999985

This enzyme, characterized in Methanobacterium thermoautotrophicum and found in several other methanogens, modifies coenzyme F420 by ligation of AMP (or GMP) from ATP (or GTP). On F420, it activates an aromatic hydroxyl group, which is unusual chemistry for an adenylyltransferase. This enzyme name has been attached to numbers of uncharacterized genes likely to instead act as phenylacetate CoA ligase, based on proximity to predicted indolepyruvate ferredoxin oxidoreductase (1.2.7.8) genes. The enzyme acts during transient exposure of the organism to oxygen.

>COG1020 EntF Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.91  E-value=2.1e-23  Score=183.61  Aligned_cols=228  Identities=22%  Similarity=0.255  Sum_probs=188.8

Q ss_pred             eeeccCCCCcEEEEecChhhHHhHHHHHHHHhhcCcEEEEcCC---CCHHHHHHHHHhcCceEEEeChHHHHHHHhcCCc
Q 026609            5 DQETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK---FDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLV   81 (236)
Q Consensus         5 ~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~---~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~   81 (236)
                      ...+....+|+++...++...... ..++.++..|+++++.+.   .++..+.+.++++++|.+..+|+.+..++.....
T Consensus       399 ~~~~~~~~~d~~l~~~s~~fD~~~-~~~f~~l~~G~~l~~~~~~~~~~~~~l~~~~~~~~vt~~~~~p~~~~~~~~~~~~  477 (642)
T COG1020         399 GARFGLDADDRVLALASLSFDASV-FEIFGALLEGARLVLAPALLQVDPAALLELLEAQGITVLLLVPLLLRLLLLAALA  477 (642)
T ss_pred             HHhcCCCcccEEeecCCcccchhH-HHHHHHHhCCCEEEecCccccCCHHHHHHHHHHcCCEEEEecHHHHHHHHhchhh
Confidence            345778888999999999888777 789999999999999874   5789999999999999999999999999876322


Q ss_pred             C--CCCCCCceEEeecCCCCCHHHHHHHHHhCC-CCceeeccccccccccccccccCCCCCCCCCCccccCCCcEEEEEe
Q 026609           82 K--KFDLSSLKLVGSGAAPLGKELMEECAKNVP-SATVIQVGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVS  158 (236)
Q Consensus        82 ~--~~~l~~lr~i~~~G~~~~~~~~~~~~~~~~-~~~v~~~~YG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~  158 (236)
                      .  ....+.+|.++.+|+.++.++.+.+....+ ...+.+ .||+||+..................+|+|.++..+.++|
T Consensus       478 ~~~~~~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~~l~~-~ygpTe~~~~~~~~~~~~~~~~~~piG~p~~n~~~~ild  556 (642)
T COG1020         478 PDLISPCERLRQLLSGGEALPLALVQRLLQLAALARRLLN-LYGPTEATLDAPSFPISAELESRVPIGRPVANTQLYILD  556 (642)
T ss_pred             ccccCCcccccEEEEcCCCCCHHHHHHHHHhccccceEee-ccCccHHhhheeeEEcccccCCCCCcceeeCCCeEEEEC
Confidence            2  222335999999999999999998888754 245555 999999655444322221111145789999999999999


Q ss_pred             CCCCCCCCCCCceEEEEecCccchhhcCCcccccccccCCCeEecCceEEEcCCCcEEEEcccCCceeeccEEeecC
Q 026609          159 VDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSN  235 (236)
Q Consensus       159 ~~~~~~~~~g~~Gel~v~~~~~~~~~~~~~~~~~~~~~~~~~~~TgD~~~~~~~g~~~~~GR~~d~i~~~G~~i~p~  235 (236)
                       +..+++|.|..||+++.|.++..+|+++++.+...|..+.+|+|||+++...+|.+.++||.|+++|++|++|...
T Consensus       557 -~~~~~~p~gv~gel~i~g~~~a~gy~~~p~lt~~~f~~~~~y~tgD~~r~~~dg~~e~lgr~D~qvki~g~Riel~  632 (642)
T COG1020         557 -QGLRPLPLGVPGELYIAGLGLALGYLNRPDLTAERFIALRLYRTGDLARPLADGALEYLGRKDSQVKIRGFRIELG  632 (642)
T ss_pred             -CCCCcCCCCCCeeeEECCcchhhhhcCChhhhHHHhhhccCccCCCeeeECCCCeEEEeccccceeEeceEecCcH
Confidence             7899999999999999999999999999999998884444899999999999999999999999999999999554

>COG1541 PaaK Coenzyme F390 synthetase [Coenzyme metabolism]

Probab=99.88  E-value=2.4e-21  Score=157.72  Aligned_cols=208  Identities=20%  Similarity=0.152  Sum_probs=161.1

Q ss_pred             ccCCCCcEEEEecChhhHHhHHHHHHHHhhcCcEEEEcCCCCHHHHHHHHHhcCceEEEeChHHHHHHHhcCCcCC--CC
Q 026609            8 TAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKK--FD   85 (236)
Q Consensus         8 ~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~--~~   85 (236)
                      .+...+|++..+.-..--.|-.....++-..|++++...+-+.+..+++++.+++|++.++|+.+..|.+..++..  ..
T Consensus       129 ~g~~~gd~v~~~~~yGl~tgg~~~~~ga~rig~~vip~~~g~~~~~~~l~~df~~tvI~~tps~~l~lae~~~~~G~~~~  208 (438)
T COG1541         129 AGVRKGDKVQNAYGYGLFTGGLGLHYGAERIGATVIPISGGNTERQLELMKDFKPTVIAATPSYLLYLAEEAEEEGIDPD  208 (438)
T ss_pred             ccCCCCCEEEEEeeeccccCCchhHHHHHhhCEEEEccCCccHHHHHHHHHhcCCcEEEEChHHHHHHHHHHHHcCCChh
Confidence            3566677777666633222222445566678888887777788999999999999999999999999998876653  33


Q ss_pred             CCCceEEeecCCCCCHHHHHHHHHhCCCCceeeccccccccccccccccCCCCCCCCCCccccCCCcEEEEEeCCCCCCC
Q 026609           86 LSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPL  165 (236)
Q Consensus        86 l~~lr~i~~~G~~~~~~~~~~~~~~~~~~~v~~~~YG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~  165 (236)
                      -.++|.+++|+|+++++..+.+.+.|+ +.+++ .||+||..+..+. .|..  .  .....+.+...++++||++++++
T Consensus       209 ~~~lk~~i~gaE~~see~R~~ie~~~g-~~~~d-iYGltE~~g~g~~-eC~~--~--~glhi~eD~~~~Ei~dP~t~e~l  281 (438)
T COG1541         209 KLSLKKGIFGAEPWSEEMRKVIENRFG-CKAFD-IYGLTEGFGPGAG-ECTE--R--NGLHIWEDHFIFEIVDPETGEQL  281 (438)
T ss_pred             hcceeEEEEecccCCHHHHHHHHHHhC-Cceee-ccccccccCCccc-cccc--c--cCCCcchhhceeeeecCCcCccC
Confidence            458999999999999999999999998 88888 9999999777522 2211  1  13344567888999999999999


Q ss_pred             CCCCceEEEEecCccchhhcCCcccccccccCCCeEecCceEEEcCCCc---------EEEEcccCCceeeccEEeecC
Q 026609          166 PPNQLGEIWLRGPNMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQ---------LYVVDRIKELIKYKGFQVTSN  235 (236)
Q Consensus       166 ~~g~~Gel~v~~~~~~~~~~~~~~~~~~~~~~~~~~~TgD~~~~~~~g~---------~~~~GR~~d~i~~~G~~i~p~  235 (236)
                      ++|+.|||+++.-+       +..      .+--.|+|||+....++.+         ..+.||.||++++.|.+|+|.
T Consensus       282 ~dge~GelV~T~L~-------~~~------~PlIRYrtgDit~i~~~~C~cGr~~~ri~~I~GR~dD~l~~~G~~vfp~  347 (438)
T COG1541         282 PDGERGELVITTLT-------KEG------MPLIRYRTGDITVILSDPCGCGRTHRRIERIEGRSDDMLIVRGVNVFPS  347 (438)
T ss_pred             CCCCeeEEEEEecc-------ccC------cceEEEEcCCeeEecccCCCCCCccccccccCcccccEEEECCEEeCHH
Confidence            99999999998632       111      1233599999999866322         678999999999999999985

>PTZ00297 pantothenate kinase; Provisional

Probab=99.67  E-value=1.1e-15  Score=142.08  Aligned_cols=187  Identities=16%  Similarity=0.105  Sum_probs=132.9

Q ss_pred             CCCCcEEEEecChhhHHhHHHHHHHHhhcCcEEEEcCCCCHHHHHHHHHhcCceEEEeChHHHHHHHhcCCcCCC-----
Q 026609           10 GELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKF-----   84 (236)
Q Consensus        10 ~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~-----   84 (236)
                      ..++|++++.+|++|+++. ...+.+++.|+++..   +++..+++.++++++|+++++|.+++.+......+..     
T Consensus       642 ~~~~D~~Ls~LPLaHI~er-~~~~~~l~~G~~I~~---~d~~~lledL~~~rPTv~~~VPrv~ekI~~~i~~~~~~~~~~  717 (1452)
T PTZ00297        642 SFKKHLMVHFTPFAMLFNR-VFVLGLFAHGSAVAT---VDAAHLQRAFVKFQPTILVAAPSLFSTSRLQLSRANERYSAV  717 (1452)
T ss_pred             CCCCCEEEEechHHHHHHH-HHHHHHHHcCCEEEe---CCHHHHHHHHHHHCCEEEEecHHHHHHHHHHHHHHhhhhhHH
Confidence            4567999999999999996 566788999999874   4789999999999999999999999866443110000     


Q ss_pred             -------------------CC------------------CCceEEeecCC--CCCHHHHHHHHHhCCCCceeeccccccc
Q 026609           85 -------------------DL------------------SSLKLVGSGAA--PLGKELMEECAKNVPSATVIQVGYGLTE  125 (236)
Q Consensus        85 -------------------~l------------------~~lr~i~~~G~--~~~~~~~~~~~~~~~~~~v~~~~YG~tE  125 (236)
                                         ..                  .++|.+++||.  +++..+..       ...+.. .||.||
T Consensus       718 ~~~lf~~A~~~k~~~~~~g~~~~~l~d~LVf~kir~~lGGrlr~~isGga~~~l~~~l~~-------~i~i~~-g~glTE  789 (1452)
T PTZ00297        718 YSWLFERAFQLRSRLINIHRRDSSLLRFIFFRATQELLGGCVEKIVLCVSEESTSFSLLE-------HISVCY-VPCLRE  789 (1452)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHhcCCeEEEEECCCccccChHHhC-------CceEEE-ecceEE
Confidence                               00                  26788888763  45433322       256777 899999


Q ss_pred             cccccccccCCCCCCCCCCccccCCCcEEEEEeCCCCCCCCCCCceEEEEecCccchhhcCCcccccccccCCCeEecCc
Q 026609          126 TSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQATKLTIDKKGWVHTGD  205 (236)
Q Consensus       126 ~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~g~~Gel~v~~~~~~~~~~~~~~~~~~~~~~~~~~~TgD  205 (236)
                      ...   .....  ..  ...|.|+|++++++.+.+...-  .+..|||++++       +++++.|...  .+||+    
T Consensus       790 ~~~---~~~~~--~~--~~~G~PlpgvEvKI~~~~E~~~--~~~~GEIlvr~-------~kdpe~T~e~--~~gW~----  847 (1452)
T PTZ00297        790 VFF---LPSEG--VF--CVDGTPAPSLQVDLEPFDEPSD--GAGIGQLVLAK-------KGEPRRTLPI--AAQWK----  847 (1452)
T ss_pred             eee---ecCCC--Cc--ccCCeecCceEEEEcccccccC--CCCCCeEEEEE-------CCChHHHHHh--hCcCc----
Confidence            431   11211  11  2239999999999987322111  12469999964       4677777653  24553    


Q ss_pred             eEEEcCCCcEEEEcccCCceee-ccEEeecC
Q 026609          206 LGYFDGDGQLYVVDRIKELIKY-KGFQVTSN  235 (236)
Q Consensus       206 ~~~~~~~g~~~~~GR~~d~i~~-~G~~i~p~  235 (236)
                           +||++.|+||++|+||+ +|++|.|+
T Consensus       848 -----~dG~L~IidRkKdlikls~GEyVaP~  873 (1452)
T PTZ00297        848 -----RDRTLRLLGPPLGILLPVAYEYVIAA  873 (1452)
T ss_pred             -----cCCeEEEEeccccceECCCCcEEcHH
Confidence                 68999999999999999 89999996

>TIGR02304 aden_form_hyp probable adenylate-forming enzyme

Probab=99.55  E-value=4e-14  Score=117.83  Aligned_cols=154  Identities=16%  Similarity=0.064  Sum_probs=106.9

Q ss_pred             CHHHHHHHHHhcCceEEEeChHHHHHHHhcCCcCCCCCCCceEEeecCCCCCHHHHHHHHHhCCCCceeecccccccccc
Q 026609           49 DLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVGYGLTETSG  128 (236)
Q Consensus        49 ~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~~G~~~~~~~~~~~~~~~~~~~v~~~~YG~tE~g~  128 (236)
                      +.+.+++.|++++++++.+.|+.+..|++..++.... ..+|.++++||.++++..+.+.+.|+ +++.+ .||+|| |.
T Consensus       175 ~~~~~l~~L~~~~P~~L~g~pS~l~~LA~~~~~~~l~-~~~k~ii~~~E~l~~~~r~~Ie~~fg-~~V~~-~YG~tE-g~  250 (430)
T TIGR02304       175 PFQAHIKRLNQRKPSIIVAPPSVLRALALEVMEGELT-IKPKKVISVAEVLEPQDRELIRNVFK-NTVHQ-IYQATE-GF  250 (430)
T ss_pred             CHHHHHHHHHHhCCCEEEEcHHHHHHHHHHHHhcCCC-CCceEEEEccCCCCHHHHHHHHHHhC-CCeeE-ccCCch-hh
Confidence            5778999999999999999999999998875544433 47899999999999999999999998 88999 999999 65


Q ss_pred             ccccccCCCCCCCCCCccccCCCcEEE--EEeCCCCCCCCCCCceEEEEecCccchhhcCCcccccccccCCCeEecCce
Q 026609          129 IATMENSFAGSRNIGSAGALAPGVEAL--IVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQATKLTIDKKGWVHTGDL  206 (236)
Q Consensus       129 ~~~~~~~~~~~~~~~~~g~p~~~~~~~--~~~~~~~~~~~~g~~Gel~v~~~~~~~~~~~~~~~~~~~~~~~~~~~TgD~  206 (236)
                      ++..|..       +....--..+.++  ++|+ .++       ++.+|++-.      +. .      ++--.|+|||+
T Consensus       251 la~eC~~-------g~lHl~ed~~~vE~~ivD~-~~~-------~~~ViT~L~------n~-~------~PlIRYrtGD~  302 (430)
T TIGR02304       251 LASTCRC-------GTLHLNEDLVHIEKQYLDE-HKR-------FVPIITDFT------RT-T------QPIVRYRLNDI  302 (430)
T ss_pred             eEEecCC-------CCEEEccccEEEEeeEECC-CCc-------eEEEEecCC------Cc-c------ceEEeeeCCCE
Confidence            5544321       1111112233444  7874 333       334665421      11 1      12225999999


Q ss_pred             EEEcCCC----c----E-EEEcccCCceee---ccE--Eeec
Q 026609          207 GYFDGDG----Q----L-YVVDRIKELIKY---KGF--QVTS  234 (236)
Q Consensus       207 ~~~~~~g----~----~-~~~GR~~d~i~~---~G~--~i~p  234 (236)
                      +...++.    .    + .+.||.||++++   +|.  +|+|
T Consensus       303 ~~~~~~~C~CGr~~~~i~~I~GR~dD~l~~~~~~G~~v~v~p  344 (430)
T TIGR02304       303 LVESEQPCSCGSATMAIERIEGRQDDIFQLITRSGDEQTVFP  344 (430)
T ss_pred             EEeCCCCCCCCCcccccCCccCccCCEEEEecCCCCeEEeCH
Confidence            8875442    2    4 388999999985   444  4466

Members of this family form a distinct clade within a larger family of proteins that also includes coenzyme F390 synthetase, an enzyme known in Methanobacterium thermoautotrophicum and a few other methanogenic archaea. That enzyme adenylates coenzyme F420 to F390, a reversible process, during oxygen stress. Other informative homologies include domains of the non-ribosomal peptide synthetases involved in activation by adenylation. The family defined by this model is likely to be of an adenylate-forming enzyme related to but distinct from coenzyme F390 synthetase.

>KOG3628 consensus Predicted AMP-binding protein [General function prediction only]

Probab=99.14  E-value=7.1e-10  Score=98.23  Aligned_cols=229  Identities=17%  Similarity=0.206  Sum_probs=158.3

Q ss_pred             eeccCCCCcEEEEecChhhHHhHHHHHHHHhhcCcEEEEcCC----CCHHHHHHHHHhcCceEEEeChHHHHHHHhcCCc
Q 026609            6 QETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK----FDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLV   81 (236)
Q Consensus         6 ~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~   81 (236)
                      +.+.+.+..-++..++++...|+....+...+.|...++.++    -++..++..++++++.-++.+-..++.+.+..+.
T Consensus       977 e~~~l~~~rpl~~~~~~~sGlgf~~wcLlgVysGh~T~Li~p~~l~nnpsLll~~i~~~kvkDt~~~~~tln~c~~~l~t 1056 (1363)
T KOG3628|consen  977 ETCQLYKSRPLLGCSSPYSGLGFNHWCLLGVYSGHPTLLISPMDLENNPSLLLQIISQYKVKDTYPTYSTLNLCQKGLET 1056 (1363)
T ss_pred             HHHccccCCceEEEecCccchhHHHHHHHHHHcCCceeecCHHHhhcCHHHHHHHHhcccccccchhHHHHHHHHhcccc
Confidence            346677888888888888888998889999999999888775    3688999999999999988777778888776543


Q ss_pred             CCCCCCCc------eEEeecCCCCCHHHHHHHHHhCCC-----Cceeecccccccccccccccc-------------CCC
Q 026609           82 KKFDLSSL------KLVGSGAAPLGKELMEECAKNVPS-----ATVIQVGYGLTETSGIATMEN-------------SFA  137 (236)
Q Consensus        82 ~~~~l~~l------r~i~~~G~~~~~~~~~~~~~~~~~-----~~v~~~~YG~tE~g~~~~~~~-------------~~~  137 (236)
                      +..+++..      ..++..-++....+.+.|.+.|..     ..+.- .|++.-.-.++....             ...
T Consensus      1057 ~~enl~~~gnn~s~s~vv~~~~RPr~ali~sf~klfa~igLsp~avSt-sys~r~Np~Ic~r~~sg~~Pt~~y~D~raLR 1135 (1363)
T KOG3628|consen 1057 SVENLSKRGNNTSSSIVVPAEERPRIALIASFKKLFAAIGLSPRAVST-SYSSRVNPFICLRSYSGPEPTTVYLDARALR 1135 (1363)
T ss_pred             ccchhhhhhcccccceeeecCCccHHHHHHHHHHHHHHcCCChhhhcc-cccccCChHhhhccccCCCCcceeechhhhh
Confidence            33333311      334445667778888888876631     11222 343332222222200             000


Q ss_pred             ------------CCCCCCCccccCCCcEEEEEeCCCCCCCCCCCceEEEEecCccchhhcCCccccc-ccc---------
Q 026609          138 ------------GSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQATK-LTI---------  195 (236)
Q Consensus       138 ------------~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~g~~Gel~v~~~~~~~~~~~~~~~~~-~~~---------  195 (236)
                                  ........|...+++++.+++||+..+|.+|+.||+|+.+.+-+.+|+.-..... +.|         
T Consensus      1136 ~grV~~ve~~ap~~l~L~dSG~~~~~~~i~IvnPEtk~pc~dge~GEIW~~S~hnA~~~~~~~d~~~~~~fn~rl~~g~~ 1215 (1363)
T KOG3628|consen 1136 EGRVRLVEVGAPHSLLLYDSGKLPVYTDIAIVNPETKGPCRDGELGEIWVNSAHNASCSFTIGDELRSNHFNARLSSGDL 1215 (1363)
T ss_pred             ccceeeeecCCCCccccccCCcccccceeEEeCCccccccccCCcceEEeccccccccccccCchhhhhhhhhhcccccc
Confidence                        0001123577889999999999999999999999999999888877665322111 111         


Q ss_pred             cCCCeEecCceEEEc------CC----CcEEEEcccCCceeeccEEeecC
Q 026609          196 DKKGWVHTGDLGYFD------GD----GQLYVVDRIKELIKYKGFQVTSN  235 (236)
Q Consensus       196 ~~~~~~~TgD~~~~~------~~----g~~~~~GR~~d~i~~~G~~i~p~  235 (236)
                      ....|-||||+|+..      ..    .-++++|-.++.+-++|.+-+|.
T Consensus      1216 ~~~sy~RTG~LGFl~~t~~t~~~~e~~~~LyVlG~i~EtlEl~GL~h~p~ 1265 (1363)
T KOG3628|consen 1216 LGKSYARTGDLGFLRRTSLTDANVERHDLLYVLGAIDETLELNGLRHFPS 1265 (1363)
T ss_pred             ccccceeeeeeeeeeeeecccccceeeeeEEEeecccceeeecCcccCcc
Confidence            133599999999863      11    23999999999999999998875

>KOG1178 consensus Non-ribosomal peptide synthetase/alpha-aminoadipate reductase and related enzymes [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.03  E-value=2.8e-09  Score=95.95  Aligned_cols=227  Identities=15%  Similarity=0.043  Sum_probs=127.5

Q ss_pred             eeeccCCCCcEEEEecCh-hhHHhHHHHHHHHhhcCcEEEEcCCC---CHHHHHHHHHhcCceEEEeChHHHHHHHhcCC
Q 026609            5 DQETAGELDYVFLCVLPL-FHVFGLAVITCGQLQKGSCIILMAKF---DLEMFLRAIEKHRVTHIWVVPPLILALAKHGL   80 (236)
Q Consensus         5 ~~~~~~~~~d~~l~~~p~-~~~~g~~~~~~~~l~~G~~~~~~~~~---~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~   80 (236)
                      ...+-.+.++++-..... ++..-. ......+++|+.+..+...   .+.++.+.+++++++..+.+|++.++++....
T Consensus       229 ~~~f~~t~s~~~~~~~~~~~~d~i~-~~~~~~L~~~~~l~~p~~~~~~~~~~l~~~le~y~i~~~~~~~a~~~~l~~~~~  307 (1032)
T KOG1178|consen  229 FTTFPPTGSDRFTFKTSVYFDDTIQ-KFIGALLFNGNNLLVPTATIKDTPGQLASTLERYGITVSHLLPAMCQLLLAILT  307 (1032)
T ss_pred             cccCCcCccchhhhhheeecccchH-HHHhhHhhcCceeecccccCccchhhHHHHHHhhhheeeeechhhhhhhhhhcC
Confidence            334445555554222222 222222 3334455666655554432   37899999999999999999999887766542


Q ss_pred             c-------------CCCCCCCceEEeecCCCCCHHHHHHHHHhCCCCceeeccccccccccccccccCCCC--CCCCCCc
Q 026609           81 V-------------KKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVGYGLTETSGIATMENSFAG--SRNIGSA  145 (236)
Q Consensus        81 ~-------------~~~~l~~lr~i~~~G~~~~~~~~~~~~~~~~~~~v~~~~YG~tE~g~~~~~~~~~~~--~~~~~~~  145 (236)
                      .             .....+.+|....+||+....+...+.+.+...-... -|++++.............  ......+
T Consensus       308 ~~~~~l~~~~~~~dl~~~~~~Lkl~~~~~ep~~v~l~~s~~~~~~~~~~~~-~y~s~~~~~~~s~~~~~~s~~ll~~~~v  386 (1032)
T KOG1178|consen  308 TSLPLLEHAFSLSDLLTKRSCLKLVVLGGEPLLVSLYTSTFDLLAEIFFGL-PYLSTDPTGLVSYDDFSPSKVLLTNENV  386 (1032)
T ss_pred             cchhhhhhhhhcccccccchhheeeeecCCccchhhhhhhhhcccceeeee-cccCCCCccceeHHhhCcccceecceeE
Confidence            2             1112238999999999999999887777665233333 6888887666554221110  0011111


Q ss_pred             cccCCC-------cEEEEEeCCCCCCCCCCCceEEEEe----cCccchhhcCCcccccccc-----cCCCeEecCceEEE
Q 026609          146 GALAPG-------VEALIVSVDTQKPLPPNQLGEIWLR----GPNMMRGYYNNEQATKLTI-----DKKGWVHTGDLGYF  209 (236)
Q Consensus       146 g~p~~~-------~~~~~~~~~~~~~~~~g~~Gel~v~----~~~~~~~~~~~~~~~~~~~-----~~~~~~~TgD~~~~  209 (236)
                      ..+...       ..+.... ..+.+.+.++.+.....    +.-...+ +..++.....+     ..+..|+|||.++.
T Consensus       387 ~~~p~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~l~~~~~~~~~~~~g-~~~~~~~~~~~~~~d~~~~r~y~tgD~gr~  464 (1032)
T KOG1178|consen  387 YSVPKFDSIIGSLTVLESLY-RAGGEGEGGVGKGCLGAEQNLSSWVVDG-YSTPENFLPNFLTVDGVKARIYRTGDNGRS  464 (1032)
T ss_pred             EeccchhhccCCCcceeeee-ccCcccCCcccceeecccccccceeecc-ccchhhcCCcccccccchhhccccccccee
Confidence            111111       1122222 23333333322221111    1111222 11222211111     23458999999999


Q ss_pred             cCCCcEEEEcccCCceeeccEEeecC
Q 026609          210 DGDGQLYVVDRIKELIKYKGFQVTSN  235 (236)
Q Consensus       210 ~~~g~~~~~GR~~d~i~~~G~~i~p~  235 (236)
                      .+.|.+.++||.|+.||++|.++.-.
T Consensus       465 l~ng~l~~~GR~d~qIK~rG~Ri~L~  490 (1032)
T KOG1178|consen  465 LKNGGLEISGRADRQIKDRGVRIELG  490 (1032)
T ss_pred             ecCCCEEEEEeccceEEEccEEEehh
Confidence            89999999999999999999998643

>PF04443 LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR007534 LuxE is an acyl-protein synthetase found in bioluminescent bacteria

Probab=98.76  E-value=7.9e-07  Score=72.94  Aligned_cols=164  Identities=23%  Similarity=0.297  Sum_probs=105.9

Q ss_pred             HhhcCcEEEEcC-CCCHHHHHHHH----HhcCceEEEeChHHHHHHHhcCCcCCC--CCC-CceEEeecC------CCCC
Q 026609           35 QLQKGSCIILMA-KFDLEMFLRAI----EKHRVTHIWVVPPLILALAKHGLVKKF--DLS-SLKLVGSGA------APLG  100 (236)
Q Consensus        35 ~l~~G~~~~~~~-~~~~~~~~~~i----~~~~~t~~~~~P~~~~~l~~~~~~~~~--~l~-~lr~i~~~G------~~~~  100 (236)
                      ....++...+-. .++.+.+.+.+    .+.++..+++.|.++..++...++...  .|+ ..+.+..||      +.++
T Consensus       161 ~~~~~~~~~l~~~~ld~~~~~~~L~~~~~~~~pv~l~Gftf~~~~~~~~l~~~~~~~~L~~~s~vi~~GGwK~~~~e~v~  240 (365)
T PF04443_consen  161 ELFFGSRFALDNDELDLEGLIEALFRAEHSGEPVLLFGFTFFIWFLLDELEERGIRFRLPKGSIVIHGGGWKGRRKEAVS  240 (365)
T ss_pred             hcccCceeeecCCccCHHHHHHHHHHHHhCCCCEEEECchHHHHHHHHHHHhcCCcccCCCCCEEEeCCCCCccccCccC
Confidence            344556644422 36666665555    456678899999988777665544433  333 455565554      5575


Q ss_pred             -HHHHHHHHHhCCC---CceeeccccccccccccccccCCCCCCCCCCccccCCCcEEEEEeCCCCCCCCCCCceEEEEe
Q 026609          101 -KELMEECAKNVPS---ATVIQVGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLR  176 (236)
Q Consensus       101 -~~~~~~~~~~~~~---~~v~~~~YG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~g~~Gel~v~  176 (236)
                       .+..+.+.+.|+-   ..+.+ .||+||.......+..       +... ..++  +.+.|+++.++++.|+.|-|.+-
T Consensus       241 r~ef~~~l~~~~Gv~~~~~i~~-~ygmtEl~s~~~~~~~-------~~~~-~p~w--V~iRDp~tl~~~~~Ge~Gli~vi  309 (365)
T PF04443_consen  241 REEFYARLQEVFGVIPIENIYD-MYGMTELNSQAYECGH-------GHFH-VPPW--VIIRDPETLEPLPPGETGLIQVI  309 (365)
T ss_pred             HHHHHHHHHHHHCCCCHHHeee-eeeccccchhheeCCC-------Cccc-CCCe--EEEECCCCCcCCCCCCeeEEEEE
Confidence             5677778888873   46778 9999998766554311       1111 1233  66679989999999999999886


Q ss_pred             cCccchhhcCCcccccccccCCCeEecCceEEEcCC--------CcEEEEcccCC
Q 026609          177 GPNMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGD--------GQLYVVDRIKE  223 (236)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~TgD~~~~~~~--------g~~~~~GR~~d  223 (236)
                      .+...+              .-+...|.|+|.+..+        .++.++||.+.
T Consensus       310 dl~~~s--------------~p~~IlTeDlGvl~~~~~c~cr~g~~f~vlGR~~~  350 (365)
T PF04443_consen  310 DLANTS--------------YPGFILTEDLGVLHGDDDCGCRKGKYFEVLGRADG  350 (365)
T ss_pred             cccccC--------------CCcEEEEcceeeecCCCCCCCccCCEEEEEeCCCC
Confidence            543210              1233779999987543        26999999873

LuxE catalyses the formation of an acyl-protein thiolester from a fatty acid and a protein. This is the second step in the bioluminescent fatty acid reduction system, which converts tetradecanoic acid to the aldehyde substrate of the luciferase-catalysed bioluminescence reaction []. A conserved cysteine found at position 364 in Photobacterium phosphoreum LuxE (Q52100 from SWISSPROT) is thought to be acylated during the transfer of the acyl group from the synthetase subunit to the reductase. The C-terminal of the synthetase is though to act as a flexible arm to transfer acyl groups between the sites of activation and reduction []. A LuxE domain is also found in the Vibrio cholerae RBFN protein (Q06961 from SWISSPROT), which is involved in the biosynthesis of the O-antigen component 3-deoxy-L-glycero-tetronic acid. This entry represents the LuxE domain, which is found in archaeal and bacterial proteins.; GO: 0047474 long-chain fatty acid luciferin component ligase activity, 0008218 bioluminescence

>KOG3628 consensus Predicted AMP-binding protein [General function prediction only]

Probab=98.73  E-value=8.9e-08  Score=85.39  Aligned_cols=224  Identities=19%  Similarity=0.170  Sum_probs=148.1

Q ss_pred             eeeccCCCCcEEEEecChhhHHhHHHHHHHHhhcCcEEEEcCC---CCHHHHHHHHHhcCceEEEeChHHHHHHHhcC--
Q 026609            5 DQETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK---FDLEMFLRAIEKHRVTHIWVVPPLILALAKHG--   79 (236)
Q Consensus         5 ~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~---~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~--   79 (236)
                      ++.+.....++++..+......|++..++.+++.|.|.+..|+   ..+..+.+.+-+++.+++..=-.-+++.....  
T Consensus       302 ~~v~~~~~~~~~l~~~~~s~~lGlilGV~~alfsg~c~i~~p~~~l~~pG~~~~l~~k~R~~~~ltd~~~Lkq~~~ny~~  381 (1363)
T KOG3628|consen  302 AHVFPVPSEDVLLTNLDPSQQLGLILGVLVALFSGYCTIGCPKEVLKPPGLIANLITKYRATWSLTDYAGLKQPVYNYQE  381 (1363)
T ss_pred             hhccccCcccceeeccCcccccchhhhhhhhhhcCceeecCchhhcCCCcchhhhhccceeEEEeecccccCcccccccC
Confidence            3445667778999999999999999999999999999999986   67889999999999998764433333322211  


Q ss_pred             ---------CcCCCCCCCceEEeecCCCCCHHHHHHHHHhC----CCCceeeccc-----------------cccccccc
Q 026609           80 ---------LVKKFDLSSLKLVGSGAAPLGKELMEECAKNV----PSATVIQVGY-----------------GLTETSGI  129 (236)
Q Consensus        80 ---------~~~~~~l~~lr~i~~~G~~~~~~~~~~~~~~~----~~~~v~~~~Y-----------------G~tE~g~~  129 (236)
                               +....+++++|.++..-..++++..+-..+.|    +...+-. .|                 +.+|.+..
T Consensus       382 ~p~a~~s~~k~~t~d~sslk~C~Vtc~~vd~~~~~ivs~~wlk~lg~~~~~~-~~~p~l~ll~hGgi~is~k~~~~~~~~  460 (1363)
T KOG3628|consen  382 DPKATLSFKKYKTPDLSSLKGCMVTCTAVDTEFQEIVSDRWLKPLGETNVKV-VDFPILCLLWHGGIPISFKDWMEIGTV  460 (1363)
T ss_pred             CcccccchhhccCCCccceeeeEEeeeecchHHHHHHHHhhcccccCcCcce-eechhhhhhhcCceEEEeccchhhhcc
Confidence                     12334788999999999999888655444333    2111111 22                 22444433


Q ss_pred             cccccCCCCCC----------------------------CCCCccccCC-CcEEEEEeCCCCCCCCCCCceEEEEecCcc
Q 026609          130 ATMENSFAGSR----------------------------NIGSAGALAP-GVEALIVSVDTQKPLPPNQLGEIWLRGPNM  180 (236)
Q Consensus       130 ~~~~~~~~~~~----------------------------~~~~~g~p~~-~~~~~~~~~~~~~~~~~g~~Gel~v~~~~~  180 (236)
                      ....+......                            ....++.-.+ .+.+.++++++.+.|..++.|||||.++.+
T Consensus       461 ~~r~p~~~~~~~~~e~ll~~~~L~~~~V~v~~e~~is~~s~kd~~~i~~g~~t~~vv~~~t~~LC~~~eVGEIwVsS~~~  540 (1363)
T KOG3628|consen  461 SIRRPEQMADTLPGEGLLSKEALKLNEVEVDTEDDISSLSVKDVLCIMPGDATLAVVNPDTNQLCKTDEVGEIWVSSNSL  540 (1363)
T ss_pred             cccCcccccccCccceeeeccccccceEEEcchhhhhhcCccccceecccceEEEEeCCCcccccccCcceeEEEecCCc
Confidence            33211100000                            0112333223 466778888899999999999999999999


Q ss_pred             chhhcCCccccccccc------------CCCeEecCceEEEcCCCcEEEEcccCCceeecc
Q 026609          181 MRGYYNNEQATKLTID------------KKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKG  229 (236)
Q Consensus       181 ~~~~~~~~~~~~~~~~------------~~~~~~TgD~~~~~~~g~~~~~GR~~d~i~~~G  229 (236)
                      ...|+.-+..+...|.            ...+.|||=+|++.+++-+++.++.|......|
T Consensus       541 ~~~~~al~~~t~~~F~~~~~~s~~~~~~n~~FmRtGLlGFv~~gki~vl~~k~d~llq~~~  601 (1363)
T KOG3628|consen  541 GKLFYALDKQTENTFKATPVESSGKPPSNVPFMRTGLLGFVHNGKIYVLGLKEDGLLQVSG  601 (1363)
T ss_pred             ccceeeccccccceEEeeeccccCCCCccchhhhhcceeeeeCCeEEEEEechhhhhhhhh
Confidence            9999987666665551            123899999999965555555555555444444

>TIGR03089 conserved hypothetical protein TIGR03089

Probab=98.60  E-value=8.4e-08  Score=73.90  Aligned_cols=57  Identities=19%  Similarity=0.169  Sum_probs=53.2

Q ss_pred             eeccCCCCcEEEEecChhhHHhHHHHHHHHhhcCcEEEEcCCCCHHHHHHHHHhcCce
Q 026609            6 QETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVT   63 (236)
Q Consensus         6 ~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t   63 (236)
                      +..+++++|+++ .+|++|.+|+...++.+++.|+++++.++|++..+++.++++++|
T Consensus       171 ~~~~l~~~D~~l-~~Pl~H~~gl~~~~~~~l~~G~t~v~~~rFd~~~~l~~i~~~~vT  227 (227)
T TIGR03089       171 RAAGLPPGDRVL-VLAWTDLEDFLATLLAPLAAGGSLVLVTHPDPARLDQIAETERVT  227 (227)
T ss_pred             hhcCCCCCCeEE-ecCCCchHHHHHHHHHHhccCceEEEecCCCHHHHHHHHHhhcCC
Confidence            346788999999 999999999988899999999999999999999999999999986

This protein family is found, so far, only in the Actinobacteria (Streptomyces, Mycobacterium, Corynebacterium, Nocardia, Propionibacterium, etc.) and never more than one to a genome. Members show twilight-level sequence similarity to family of AMP-binding enzymes described by Pfam model pfam00501.

>PRK09188 serine/threonine protein kinase; Provisional

Probab=98.19  E-value=1.4e-06  Score=71.56  Aligned_cols=34  Identities=21%  Similarity=0.201  Sum_probs=30.8

Q ss_pred             CCCeEecCceEEE-cCCCcEEEEcccCCceeecc---EEeecC
Q 026609          197 KKGWVHTGDLGYF-DGDGQLYVVDRIKELIKYKG---FQVTSN  235 (236)
Q Consensus       197 ~~~~~~TgD~~~~-~~~g~~~~~GR~~d~i~~~G---~~i~p~  235 (236)
                      .+|||+|||+|++ |++|+++|.||.+     +|   +||+|+
T Consensus       207 ~dgW~~TGDlg~~~d~dG~l~~~gR~~-----~G~~i~nV~p~  244 (365)
T PRK09188        207 SRIWLATGKKVYNFITRGLFSWSDGEG-----TGDRIDNEAPA  244 (365)
T ss_pred             cCcEEeCCCEEEEEcCCCeEEEEecCc-----CCcCceeeCHH
Confidence            6899999999998 7999999999998     78   788884

>PF03321 GH3: GH3 auxin-responsive promoter; InterPro: IPR004993 Transcription of the gene family, GH3, has been shown to be specifically induced by the plant hormone auxin

Probab=98.06  E-value=2.5e-05  Score=67.54  Aligned_cols=126  Identities=19%  Similarity=0.189  Sum_probs=70.6

Q ss_pred             CCCceEEeecCCCCCHHHHHHHHHhCCCCceeeccccccccccccccccCCCCCCCCCCccccCCCcEEEEEeCCC----
Q 026609           86 LSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDT----  161 (236)
Q Consensus        86 l~~lr~i~~~G~~~~~~~~~~~~~~~~~~~v~~~~YG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~----  161 (236)
                      .|.++.+..-+..-...-.+.+++.+|+..+....|++||+ .+.....    .......-.|-.+ -++.++.++    
T Consensus       266 WP~L~~v~~~~~g~~~~y~~~l~~~~g~~~~~~~~y~ASEg-~i~i~~~----~~~~~~~l~~~~~-ffEFip~~~~~~~  339 (528)
T PF03321_consen  266 WPNLKLVSCWGGGSMAPYAPKLREYFGGVPIQSKGYGASEG-FIGIPLD----PEDPGYVLAPDSG-FFEFIPVDEDEQN  339 (528)
T ss_dssp             STT--EEEEE-SGGGGGGHHHHHHHHTTS-EEE-EEEETTE-EEEEES-----CCC--EEE-TTSS-EEEEEE-STT---
T ss_pred             CCCCcEEEEEcCCChHHHHHHHHHHcCCCceeeccccccce-EEEEecC----CCCCceEeecCCe-EEEEEeccCCccc
Confidence            67899544444333345556778888877777779999996 3333221    1112222223333 455555433    


Q ss_pred             ----CC-----CCCCCCceEEEEecCccchhhcCCcccccccccCCCeEecCceEEEc--CCC--cEEEEcccCCceeec
Q 026609          162 ----QK-----PLPPNQLGEIWLRGPNMMRGYYNNEQATKLTIDKKGWVHTGDLGYFD--GDG--QLYVVDRIKELIKYK  228 (236)
Q Consensus       162 ----~~-----~~~~g~~Gel~v~~~~~~~~~~~~~~~~~~~~~~~~~~~TgD~~~~~--~~g--~~~~~GR~~d~i~~~  228 (236)
                          .+     .+..|+..||+|++.+   |.|              .|+.||+++..  .++  .+.|+||.+.++++.
T Consensus       340 ~~~~~~~l~~~ele~G~~YelviTt~~---GLy--------------RY~iGDvVrv~gf~~~~P~i~F~~R~~~~l~l~  402 (528)
T PF03321_consen  340 PSEQPKTLLLHELEVGEEYELVITTNS---GLY--------------RYRIGDVVRVTGFYNQTPRIEFVGRRGQVLSLF  402 (528)
T ss_dssp             ----SSSEEGGG--TT-EEEEEEESTT---S-S--------------SEEECEEEEEEEEETTEEEEEEEEETTEEE-SS
T ss_pred             ccCCCceecHHHhcCCCeEEEEEeccc---cee--------------eeecCCEEEEeeccCCCcEEEEeccCCceeecc
Confidence                22     2557889999998742   122              39999999873  223  799999999999999


Q ss_pred             cEEeec
Q 026609          229 GFQVTS  234 (236)
Q Consensus       229 G~~i~p  234 (236)
                      |+|++.
T Consensus       403 gEkl~e  408 (528)
T PF03321_consen  403 GEKLSE  408 (528)
T ss_dssp             S--EEH
T ss_pred             eeecCH
Confidence            999875

The auxin-responsive GH3 gene promoter is composed of multiple auxin response elements (AuxREs), and each AuxRE contributes incrementally to the strong auxin inducibility to the promoter.; PDB: 4EPL_A 4EQ4_B 4EWV_B 4EQL_B 4EPM_A.

>PLN02620 indole-3-acetic acid-amido synthetase

Probab=97.97  E-value=9.7e-05  Score=64.08  Aligned_cols=131  Identities=15%  Similarity=0.048  Sum_probs=80.3

Q ss_pred             CCCCCceEEeecCCCCCHHHHHHHHHhCCCCceeeccccccccccccccccCCCCCCCCCCc-cccCCC---cEEEEEeC
Q 026609           84 FDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVGYGLTETSGIATMENSFAGSRNIGSA-GALAPG---VEALIVSV  159 (236)
Q Consensus        84 ~~l~~lr~i~~~G~~~~~~~~~~~~~~~~~~~v~~~~YG~tE~g~~~~~~~~~~~~~~~~~~-g~p~~~---~~~~~~~~  159 (236)
                      .-.|.+|+|-..-..-...-...++..+++..+....|++||+-. .....+.   .++... ....|+   .++.-++.
T Consensus       301 rLWP~lk~I~~~~tGsm~~Y~p~L~~y~gglpl~~~~Y~ASE~~~-ginl~P~---~~p~~~sy~L~p~~~yFEFip~~~  376 (612)
T PLN02620        301 RLWPNTKYVDVIVTGTMSQYIPTLDYYSNGLPLVCTMYASSECYF-GVNLNPL---CKPSEVSYTLIPTMAYFEFLPVHR  376 (612)
T ss_pred             HhCCCCcEEEEECCCCHHHHHHHHHHHcCCCccccccccccceEE-EeccCCC---CCcccceeeecCCcEEEEEeeccC
Confidence            356788876654444555666777777888888888999999643 3321111   111111 111222   22322221


Q ss_pred             CC-----------------CCC-----CCCCCceEEEEecCccchhhcCCcccccccccCCCeEecCceEEE----cCCC
Q 026609          160 DT-----------------QKP-----LPPNQLGEIWLRGPNMMRGYYNNEQATKLTIDKKGWVHTGDLGYF----DGDG  213 (236)
Q Consensus       160 ~~-----------------~~~-----~~~g~~Gel~v~~~~~~~~~~~~~~~~~~~~~~~~~~~TgD~~~~----~~~g  213 (236)
                      ++                 +++     +..|+..||+|++-+   |.+              .|+.||+.+.    +...
T Consensus       377 ~~~~~~~~~~~~~~~~~~~~~~v~l~ev~~G~~YelvvTt~~---GLy--------------RYrlGDvv~V~Gf~n~~P  439 (612)
T PLN02620        377 NNGVTNSISLPKSLNEKEQQELVDLVDVKLGQEYELVVTTYA---GLY--------------RYRVGDVLRVAGFKNKAP  439 (612)
T ss_pred             cccccccccccccccccccCccccHHHccCCCeEEEEEEecC---ceE--------------EEecCCEEEEeeecCCCc
Confidence            11                 111     457888999997632   111              3899999876    4557


Q ss_pred             cEEEEcccCCceeeccEEeecC
Q 026609          214 QLYVVDRIKELIKYKGFQVTSN  235 (236)
Q Consensus       214 ~~~~~GR~~d~i~~~G~~i~p~  235 (236)
                      .+.|++|.+-+..+.|+|+..+
T Consensus       440 ~~~Fv~R~~~~lsi~gEK~tE~  461 (612)
T PLN02620        440 QFSFICRKNVVLSIDSDKTDEV  461 (612)
T ss_pred             eEEEEeecCceeecccccCCHH
Confidence            8999999999999999998643

>PLN02247 indole-3-acetic acid-amido synthetase

Probab=97.83  E-value=0.00017  Score=62.66  Aligned_cols=131  Identities=11%  Similarity=0.068  Sum_probs=80.4

Q ss_pred             CCCCCceEEeecCCCCCHHHHHHHHHhCCCCceeeccccccccccccccccCCCCCCCCCC-ccccCCC-cEEEEEeCCC
Q 026609           84 FDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVGYGLTETSGIATMENSFAGSRNIGS-AGALAPG-VEALIVSVDT  161 (236)
Q Consensus        84 ~~l~~lr~i~~~G~~~~~~~~~~~~~~~~~~~v~~~~YG~tE~g~~~~~~~~~~~~~~~~~-~g~p~~~-~~~~~~~~~~  161 (236)
                      .-.|.+|+|-..-......-...++..+++..++...|++||+-. .....+.   .++.. .....|+ .-++.++.++
T Consensus       290 rLWP~lk~I~~~~tGsm~~Y~~~L~~y~gglpl~s~~Y~sSE~~~-ginl~p~---~~p~~~sy~L~p~~~yFEFip~~~  365 (606)
T PLN02247        290 RLWPRTKYIEVIVTGSMAQYIPTLEFYSGGLPLVSTMYASSECYF-GINLKPL---SDPSDVSYTLLPNMAYFEFLPVDK  365 (606)
T ss_pred             HhCCCCcEEEEECCCCHHHHHHHHHHHcCCCceecccccccceEE-EeccCcC---CCccCCceeecCCcEEEEEeecCC
Confidence            356788886664444456666778778888888888999999643 2221111   11111 1112222 1223332112


Q ss_pred             CC-----------------------------CCCCCCceEEEEecCccchhhcCCcccccccccCCCeEecCceEEE---
Q 026609          162 QK-----------------------------PLPPNQLGEIWLRGPNMMRGYYNNEQATKLTIDKKGWVHTGDLGYF---  209 (236)
Q Consensus       162 ~~-----------------------------~~~~g~~Gel~v~~~~~~~~~~~~~~~~~~~~~~~~~~~TgD~~~~---  209 (236)
                      ++                             .+..|+..||+|++-+   |.+              .|+.||+.+.   
T Consensus       366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~evk~G~~YelVvTt~~---GLY--------------RYrlGDvv~V~GF  428 (606)
T PLN02247        366 NNGEVIHFVQCNGTDDDDDALKEDLEIVDLVDVKVGHYYELVVTTFT---GLY--------------RYRVGDILMVTGF  428 (606)
T ss_pred             CcccccccccccccccccccccccCceecHHHccCCCeEEEEEEecC---ceE--------------EEecCCEEEEeee
Confidence            11                             2457888899987621   111              4899999775   


Q ss_pred             -cCCCcEEEEcccCCceeeccEEeecC
Q 026609          210 -DGDGQLYVVDRIKELIKYKGFQVTSN  235 (236)
Q Consensus       210 -~~~g~~~~~GR~~d~i~~~G~~i~p~  235 (236)
                       +...++.|++|.+.+..+.|+|+..+
T Consensus       429 ~n~~P~~~Fv~R~~~vlsi~gEK~tE~  455 (606)
T PLN02247        429 YNNAPQFRFVQRRNVVLSIDTDKTNEE  455 (606)
T ss_pred             cCCCceEEEEecCCceeecccccCCHH
Confidence             45578999999999999999998643

>PLN02249 indole-3-acetic acid-amido synthetase

Probab=97.76  E-value=0.00064  Score=59.47  Aligned_cols=128  Identities=11%  Similarity=0.054  Sum_probs=76.5

Q ss_pred             CCCC---ceEEeecCCCCCHHHHHHHHHhCCCCceeeccccccccccccccccCCCCCCCCCCccccCCCcEEEEEeCC-
Q 026609           85 DLSS---LKLVGSGAAPLGKELMEECAKNVPSATVIQVGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVD-  160 (236)
Q Consensus        85 ~l~~---lr~i~~~G~~~~~~~~~~~~~~~~~~~v~~~~YG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~-  160 (236)
                      -.|.   +..++.||-.   .-...++..+|+..++...|++||+.. +....+..........--| .+.-++.++.+ 
T Consensus       300 lWPnl~~i~~~~~G~~~---~Y~~~l~~~~g~~~~~~~~Y~ASEg~~-gi~~~~~~~p~~~~~~l~~-~~~ffEFiP~~~  374 (597)
T PLN02249        300 IWPNTKYLDVIVTGAMA---QYIPMLEYYSGGLPMASTIYASSESYF-GINLNPMCKPSEVSYTIMP-NMAYFEFLPHNH  374 (597)
T ss_pred             hCCCCCeEEEEecCChH---HHHHHHHHHcCCCccccccccccceEE-EeecCCCCCCCCcceEecC-CcEEEEeeeccc
Confidence            3566   5556666543   555667777776666666999999643 3221111001111111112 25555555321 


Q ss_pred             CC-------CC-----CCCCCceEEEEecCccchhhcCCcccccccccCCCeEecCceEEEc----CCCcEEEEcccCCc
Q 026609          161 TQ-------KP-----LPPNQLGEIWLRGPNMMRGYYNNEQATKLTIDKKGWVHTGDLGYFD----GDGQLYVVDRIKEL  224 (236)
Q Consensus       161 ~~-------~~-----~~~g~~Gel~v~~~~~~~~~~~~~~~~~~~~~~~~~~~TgD~~~~~----~~g~~~~~GR~~d~  224 (236)
                      .+       ..     +..|+..||+|++-+   |.|              .|+.||..+..    .--++.|+||.+.+
T Consensus       375 ~~~~~~~~~~~v~l~eVe~G~~Y~lVvTT~~---GLy--------------RY~iGDvVrvtgf~~~~P~i~F~gR~~~~  437 (597)
T PLN02249        375 DGDGALDETSLVELADVEVGKEYELVITTYA---GLY--------------RYRVGDILRVTGFHNSAPQFKFIRRKNVL  437 (597)
T ss_pred             CCcccCCCCcEecHHHcCCCCeEEEEEEccc---cee--------------EeecCCEEEEeeccCCCcEEEEEccCCcc
Confidence            11       12     457888999997632   111              39999999874    24579999999999


Q ss_pred             eeeccEEeec
Q 026609          225 IKYKGFQVTS  234 (236)
Q Consensus       225 i~~~G~~i~p  234 (236)
                      +++.|+|+..
T Consensus       438 ls~~GEKl~e  447 (597)
T PLN02249        438 LSIESDKTDE  447 (597)
T ss_pred             eecccccCCH
Confidence            9999999864

>PLN02736 long-chain acyl-CoA synthetase

Probab=82.08  E-value=14  Score=33.32  Aligned_cols=82  Identities=9%  Similarity=-0.005  Sum_probs=61.0

Q ss_pred             ccCCCCcEEEEecChhhHHhHHHHHHHHhhcCcEEEEcC-CCCHHHHHHHHHhcCceEEEeChHHHHHHHhcCCcCCCCC
Q 026609            8 TAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDL   86 (236)
Q Consensus         8 ~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l   86 (236)
                      .|+.++|++...++-..-..  ..+++++..|+.++... .+.++++...+++.+++.++..+..+..+.....    .+
T Consensus        98 ~Gv~~gd~Vai~~~n~~e~~--~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~l~~~~~~~~~~~~~~~----~~  171 (651)
T PLN02736         98 HGIPKGACVGLYFINRPEWL--IVDHACSAYSYVSVPLYDTLGPDAVKFIVNHAEVAAIFCVPQTLNTLLSCLS----EI  171 (651)
T ss_pred             hCCCCCCEEEEEcCCCHHHH--HHHHHHHHcCCeEEEeecCCCHHHHHHHHhccCCCEEEECHHHHHHHHHHhh----cC
Confidence            57889999988888666543  36678899999998764 5789999999999999999998877666544321    23


Q ss_pred             CCceEEeec
Q 026609           87 SSLKLVGSG   95 (236)
Q Consensus        87 ~~lr~i~~~   95 (236)
                      +.++.++..
T Consensus       172 ~~l~~ii~~  180 (651)
T PLN02736        172 PSVRLIVVV  180 (651)
T ss_pred             CCceEEEEE
Confidence            456665543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	236
3tsy_A	979	4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Pr		1e-47
2d1t_A	548	Crystal Structure Of The Thermostable Japanese Fire		3e-46
2d1q_A	548	Crystal Structure Of The Thermostable Japanese Fire		4e-46
2d1s_A	548	Crystal Structure Of The Thermostable Japanese Fire		5e-46
3qya_A	582	Crystal Structure Of A Red-Emitter Mutant Of Lampyr		9e-46
3a9u_A	536	Crystal Structures And Enzymatic Mechanisms Of A Po		1e-45
4g37_A	555	Structure Of Cross-Linked Firefly Luciferase In Sec		5e-45
3iep_A	551	Firefly Luciferase Apo Structure (P41 Form) Length		6e-45
1ba3_A	550	Firefly Luciferase In Complex With Bromoform Length		6e-45
4g36_A	555	Photinus Pyralis Luciferase In The Adenylate-Formin		7e-45
3ivr_A	509	Crystal Structure Of Putative Long-Chain-Fatty-Acid		1e-26
4fuq_A	503	Crystal Structure Of Apo Matb From Rhodopseudomonas		1e-21
3g7s_A	549	Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Li		2e-20
4fut_A	503	Crystal Structure Of Atp Bound Matb From Rhodopseud		2e-18
4gxr_A	503	Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3 Len		2e-18
4gxq_A	506	Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimer		2e-18
3r44_A	517	Mycobacterium Tuberculosis Fatty Acyl Coa Synthetas		1e-16
1ult_A	541	Crystal Structure Of Tt0168 From Thermus Thermophil		4e-16
3ipl_A	501	Crystal Structure Of O-Succinylbenzoic Acid-Coa Lig		9e-16
3nyq_A	505	Malonyl-Coa Ligase Ternary Product Complex With Met		2e-15
3t5b_A	396	Crystal Structure Of N-Terminal Domain Of Facl13 Fr		4e-14
3pbk_A	583	Structural And Functional Studies Of Fatty Acyl-Ade		2e-13
3rg2_A	617	Structure Of A Two-Domain Nrps Fusion Protein Conta		3e-13
3o82_A	544	Structure Of Base N-Terminal Domain From Acinetobac		6e-13
1mdb_A	539	Crystal Structure Of Dhbe In Complex With Dhb-adeny		6e-13
1md9_A	539	Crystal Structure Of Dhbe In Complex With Dhb And A		4e-12
3kxw_A	590	The Crystal Structure Of Fatty Acid Amp Ligase From		7e-08
2v7b_A	529	Crystal Structures Of A Benzoate Coa Ligase From Bu		6e-07
3etc_A	580	2.1 A Structure Of Acyl-Adenylate Synthetase From M		1e-06
2qvx_X	504	4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATIO		2e-06
2qvz_X	504	4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303A MUTATIO		6e-06
3l8c_A	521	Structure Of Probable D-Alanine--Poly(Phosphoribito		7e-06
1t5d_X	504	4-Chlorobenzoyl-Coa LigaseSYNTHETASE BOUND TO 4-Chl		2e-05
3dlp_X	504	4-Chlorobenzoyl-Coa LigaseSYNTHETASE, MUTANT D402P,		2e-05
3e7w_A	511	Crystal Structure Of Dlta: Implications For The Rea		3e-05
3cw8_X	504	4-chlorobenzoyl-coa Ligase/synthetase, Bound To 4cb		4e-05
2wd9_A	569	Crystal Structure Of Human Acyl-coa Synthetase Medi		5e-05
3b7w_A	570	Crystal Structure Of Human Acyl-Coa Synthetase Medi		5e-05
1ry2_A	663	Crystal Structure Of Yeast Acetyl-Coenzyme A Synthe		7e-05
3t5a_A	480	Crystal Structure Of N-Terminal Domain Of Faal28 G3		5e-04
4gr5_A	570	Crystal Structure Of Slgn1deltaasub In Complex With		7e-04

>pdb|3TSY|A Chain A, 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Protein Length = 979

Iteration: 1
 Score =  186 bits (471), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 106/224 (47%), Positives = 147/224 (65%), Gaps = 6/224 (2%)
Query: 13  DYVFLCVLPLFHVFGL-AVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPL 71
           D V LCVLP+FH++ L +++ CG L+ G+ I++M KF++ + L  I++ +VT   +VPP+
Sbjct: 270 DDVILCVLPMFHIYALNSIMLCG-LRVGAAILIMPKFEINLLLELIQRCKVTVAPMVPPI 328
Query: 72  ILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVGYGLTETSGIAT 131
           +LA+AK    +K+DLSS+++V SGAAPLGKEL +      P+A + Q GYG+TE   +  
Sbjct: 329 VLAIAKSSETEKYDLSSIRVVKSGAAPLGKELEDAVNAKFPNAKLGQ-GYGMTEAGPVLA 387
Query: 132 MENSFAGSR---NIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNE 188
           M   FA        G+ G +    E  IV  DT   L  NQ GEI +RG  +M+GY NN 
Sbjct: 388 MSLGFAKEPFPVKSGACGTVVRNAEMKIVDPDTGDSLSRNQPGEICIRGHQIMKGYLNNP 447
Query: 189 QATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 232
            AT  TIDK GW+HTGD+G  D D +L++VDR+KELIKYKGFQV
Sbjct: 448 AATAETIDKDGWLHTGDIGLIDDDDELFIVDRLKELIKYKGFQV 491

>pdb|2D1T|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Red-Color Emission S286n Mutant Complexed With High-Energy Intermediate Analogue Length = 548

Iteration: 1
 Score =  181 bits (459), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 95/220 (43%), Positives = 144/220 (65%), Gaps = 12/220 (5%)
Query: 17  LCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALA 76
           L V+P  H FG+   T G L  G  ++++ KFD E FL+ ++ ++ T++ +VP L   L 
Sbjct: 240 LTVVPFHHGFGM-FTTLGYLICGFRVVMLTKFDEETFLKTLQDYKCTNVILVPTLFAILN 298
Query: 77  KHGLVKKFDLSSLKLVGSGAAPLGKELMEECAK--NVPSATVIQVGYGLTETSG--IATM 132
           K  L+ K+DLS+L  + SG APL KE+ E  A+  N+P    ++ GYGLTET+   I T 
Sbjct: 299 KSELLNKYDLSNLVEIASGGAPLSKEVGEAVARRFNLPG---VRQGYGLTETTSAIIITP 355
Query: 133 ENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQATK 192
           E    G    G++G + P  +A ++ +DT+K L PN+ GE+ ++GP +M+GY NN +ATK
Sbjct: 356 E----GDDKPGASGKVVPLFKAKVIDLDTKKSLGPNRRGEVCVKGPMLMKGYVNNPEATK 411
Query: 193 LTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 232
             ID++GW+HTGD+GY+D +   ++VDR+K LIKYKG+QV
Sbjct: 412 ELIDEEGWLHTGDIGYYDEEKHFFIVDRLKSLIKYKGYQV 451

>pdb|2D1Q|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Complexed With Mgatp Length = 548

Iteration: 1
 Score =  181 bits (458), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 95/220 (43%), Positives = 143/220 (65%), Gaps = 12/220 (5%)
Query: 17  LCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALA 76
           L V+P  H FG+   T G L  G  ++++ KFD E FL+ ++ ++ T + +VP L   L 
Sbjct: 240 LTVVPFHHGFGM-FTTLGYLICGFRVVMLTKFDEETFLKTLQDYKCTSVILVPTLFAILN 298
Query: 77  KHGLVKKFDLSSLKLVGSGAAPLGKELMEECAK--NVPSATVIQVGYGLTETSG--IATM 132
           K  L+ K+DLS+L  + SG APL KE+ E  A+  N+P    ++ GYGLTET+   I T 
Sbjct: 299 KSELLNKYDLSNLVEIASGGAPLSKEVGEAVARRFNLPG---VRQGYGLTETTSAIIITP 355
Query: 133 ENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQATK 192
           E    G    G++G + P  +A ++ +DT+K L PN+ GE+ ++GP +M+GY NN +ATK
Sbjct: 356 E----GDDKPGASGKVVPLFKAKVIDLDTKKSLGPNRRGEVCVKGPMLMKGYVNNPEATK 411
Query: 193 LTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 232
             ID++GW+HTGD+GY+D +   ++VDR+K LIKYKG+QV
Sbjct: 412 ELIDEEGWLHTGDIGYYDEEKHFFIVDRLKSLIKYKGYQV 451

>pdb|2D1S|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Complexed With High-Energy Intermediate Analogue Length = 548

Iteration: 1
 Score =  180 bits (457), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 95/220 (43%), Positives = 143/220 (65%), Gaps = 12/220 (5%)
Query: 17  LCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALA 76
           L V+P  H FG+   T G L  G  ++++ KFD E FL+ ++ ++ T + +VP L   L 
Sbjct: 240 LTVVPFHHGFGM-FTTLGYLICGFRVVMLTKFDEETFLKTLQDYKCTSVILVPTLFAILN 298
Query: 77  KHGLVKKFDLSSLKLVGSGAAPLGKELMEECAK--NVPSATVIQVGYGLTETSG--IATM 132
           K  L+ K+DLS+L  + SG APL KE+ E  A+  N+P    ++ GYGLTET+   I T 
Sbjct: 299 KSELLNKYDLSNLVEIASGGAPLSKEVGEAVARRFNLPG---VRQGYGLTETTSAIIITP 355
Query: 133 ENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQATK 192
           E    G    G++G + P  +A ++ +DT+K L PN+ GE+ ++GP +M+GY NN +ATK
Sbjct: 356 E----GDDKPGASGKVVPLFKAKVIDLDTKKSLGPNRRGEVCVKGPMLMKGYVNNPEATK 411
Query: 193 LTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 232
             ID++GW+HTGD+GY+D +   ++VDR+K LIKYKG+QV
Sbjct: 412 ELIDEEGWLHTGDIGYYDEEKHFFIVDRLKSLIKYKGYQV 451

>pdb|3QYA|A Chain A, Crystal Structure Of A Red-Emitter Mutant Of Lampyris Turkestanicus Luciferase Length = 582

Iteration: 1
 Score =  179 bits (455), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 97/220 (44%), Positives = 134/220 (60%), Gaps = 3/220 (1%)
Query: 13  DYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLI 72
           D   L V+P  H FG+   T G L  G  I+LM +F+ E+FLR+++ +++    +VP L 
Sbjct: 268 DTAILTVIPFHHGFGM-FTTLGYLTCGFRIVLMYRFEEELFLRSLQDYKIQSALLVPTLF 326
Query: 73  LALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVGYGLTETSGIATM 132
              AK  LV K+DLS+L  + SG APL KE+ E  AK      + Q GYGLTET+  A +
Sbjct: 327 SFFAKSTLVDKYDLSNLHEIASGGAPLAKEVGEAVAKRFKLPGIRQ-GYGLTETTS-AII 384
Query: 133 ENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQATK 192
                     G+ G + P   A IV +DT K L  NQ GE+ ++GP +M+GY NN +AT 
Sbjct: 385 ITPRGRDDKPGACGKVVPFFSAKIVDLDTGKTLGVNQRGELCVKGPMIMKGYVNNPEATS 444
Query: 193 LTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 232
             IDK GW+H+GD+ Y+D DG  ++VDR+K LIKYKG+QV
Sbjct: 445 ALIDKDGWLHSGDIAYYDKDGYFFIVDRLKSLIKYKGYQV 484

>pdb|3A9U|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus Tomentosa 4- Coumarate--Coa Ligase Length = 536

Iteration: 1
 Score =  179 bits (453), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 104/223 (46%), Positives = 148/223 (66%), Gaps = 6/223 (2%)
Query: 15  VFLCVLPLFHVFGL-AVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLIL 73
           V LCVLP+FH++ L +++ CG L+ G+ I++M KF++   L  IEK++V+   VVPP+++
Sbjct: 225 VILCVLPMFHIYALNSIMLCG-LRVGAPILIMPKFEIGSLLGLIEKYKVSIAPVVPPVMM 283
Query: 74  ALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVGYGLTETSGIATME 133
           ++AK   + K DLSSL+++ SG APLGKEL +      P A + Q GYG+TE   +  M 
Sbjct: 284 SIAKSPDLDKHDLSSLRMIKSGGAPLGKELEDTVRAKFPQARLGQ-GYGMTEAGPVLAMC 342
Query: 134 NSFAGSR---NIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQA 190
            +FA        G+ G +    E  IV  +T   LP NQ GEI +RG  +M+GY N+ +A
Sbjct: 343 LAFAKEPFDIKPGACGTVVRNAEMKIVDPETGASLPRNQPGEICIRGDQIMKGYLNDPEA 402
Query: 191 TKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVT 233
           T  TIDK+GW+HTGD+GY D D +L++VDR+KELIKYKGFQV 
Sbjct: 403 TSRTIDKEGWLHTGDIGYIDDDDELFIVDRLKELIKYKGFQVA 445

>pdb|4G37|A Chain A, Structure Of Cross-Linked Firefly Luciferase In Second Catalytic Conformation Length = 555

Iteration: 1
 Score =  177 bits (449), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 97/222 (43%), Positives = 137/222 (61%), Gaps = 8/222 (3%)
Query: 13  DYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLI 72
           D   L V+P  H FG+   T G L  G  ++LM +F+ E+FLR+++ +++    +VP L 
Sbjct: 239 DTAILSVVPFHHGFGM-FTTLGYLISGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLF 297
Query: 73  LALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAK--NVPSATVIQVGYGLTETSGIA 130
             LAK  L+ K+DLS+L  + SG APL KE+ E  AK  ++P    I+ GYGLTET+   
Sbjct: 298 SFLAKSTLIDKYDLSNLHEIASGGAPLSKEVGEAVAKRFHLPG---IRQGYGLTETTSAI 354
Query: 131 TMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQA 190
            +  +  G    G+ G + P  EA +V +DT K L  NQ GE+ +RGP +M GY NN +A
Sbjct: 355 LI--TPKGDDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQRGELSVRGPMIMSGYVNNPEA 412
Query: 191 TKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 232
           T   IDK GW+H+GD+ Y+D D   ++VDR+K LIKYKG QV
Sbjct: 413 TNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGCQV 454

>pdb|3IEP|A Chain A, Firefly Luciferase Apo Structure (P41 Form) Length = 551

Iteration: 1
 Score =  177 bits (448), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 96/222 (43%), Positives = 136/222 (61%), Gaps = 8/222 (3%)
Query: 13  DYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLI 72
           D   L V+P  H FG+   T G L  G  ++LM +F+ E+FLR+++ +++    +VP L 
Sbjct: 234 DTAILSVVPFHHGFGM-FTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLF 292
Query: 73  LALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAK--NVPSATVIQVGYGLTETSGIA 130
              AK  L+ K+DLS+L  + SG APL KE+ E  AK  ++P    I+ GYGLTET+   
Sbjct: 293 SFFAKSTLIDKYDLSNLHEIASGGAPLSKEVGEAVAKRFHLPG---IRQGYGLTETTSAI 349
Query: 131 TMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQA 190
            +     G    G+ G + P  EA +V +DT K L  NQ GE+ +RGP +M GY NN +A
Sbjct: 350 LITPE--GDDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQRGELCVRGPMIMSGYVNNPEA 407
Query: 191 TKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 232
           T   IDK GW+H+GD+ Y+D D   ++VDR+K LIKYKG+QV
Sbjct: 408 TNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQV 449

>pdb|1BA3|A Chain A, Firefly Luciferase In Complex With Bromoform Length = 550

Iteration: 1
 Score =  177 bits (448), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 96/222 (43%), Positives = 136/222 (61%), Gaps = 8/222 (3%)
Query: 13  DYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLI 72
           D   L V+P  H FG+   T G L  G  ++LM +F+ E+FLR+++ +++    +VP L 
Sbjct: 234 DTAILSVVPFHHGFGM-FTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLF 292
Query: 73  LALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAK--NVPSATVIQVGYGLTETSGIA 130
              AK  L+ K+DLS+L  + SG APL KE+ E  AK  ++P    I+ GYGLTET+   
Sbjct: 293 SFFAKSTLIDKYDLSNLHEIASGGAPLSKEVGEAVAKRFHLPG---IRQGYGLTETTSAI 349
Query: 131 TMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQA 190
            +     G    G+ G + P  EA +V +DT K L  NQ GE+ +RGP +M GY NN +A
Sbjct: 350 LITPE--GDDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQRGELCVRGPMIMSGYVNNPEA 407
Query: 191 TKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 232
           T   IDK GW+H+GD+ Y+D D   ++VDR+K LIKYKG+QV
Sbjct: 408 TNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQV 449

>pdb|4G36|A Chain A, Photinus Pyralis Luciferase In The Adenylate-Forming Conformation Bound To Dlsa Length = 555

Iteration: 1
 Score =  176 bits (447), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 95/220 (43%), Positives = 133/220 (60%), Gaps = 4/220 (1%)
Query: 13  DYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLI 72
           D   L V+P  H FG+   T G L  G  ++LM +F+ E+FLR+++ +++    +VP L 
Sbjct: 239 DTAILSVVPFHHGFGM-FTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLF 297
Query: 73  LALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVGYGLTETSGIATM 132
              AK  L+ K+DLS+L  + SG APL KE+ E  AK      + Q GYGLTET+    +
Sbjct: 298 SFFAKSTLIDKYDLSNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQ-GYGLTETTSAILI 356
Query: 133 ENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQATK 192
                G    G+ G + P  EA +V +DT K L  NQ GE+ +RGP +M GY NN +AT 
Sbjct: 357 TPE--GDDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQRGELCVRGPMIMSGYVNNPEATN 414
Query: 193 LTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 232
             IDK GW+H+GD+ Y+D D   ++VDR+K LIKYKG+QV
Sbjct: 415 ALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQV 454

>pdb|3IVR|A Chain A, Crystal Structure Of Putative Long-Chain-Fatty-Acid Coa Ligase From Rhodopseudomonas Palustris Cga009 Length = 509

Iteration: 1
 Score =  116 bits (290), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 86/222 (38%), Positives = 118/222 (53%), Gaps = 18/222 (8%)
Query: 15  VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILA 74
           V L +LPLFHV GL ++   Q Q G   ++ AKFD     R IE H+VT +    P++  
Sbjct: 203 VNLGMLPLFHVTGLGLMLTLQ-QAGGASVIAAKFDPAQAARDIEAHKVTVMAEFAPMLGN 261
Query: 75  LAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVGYGLTETSGIATMEN 134
           +       +  L+SL+ V     P   E +E      P+AT     +G +ETSG++T   
Sbjct: 262 ILDQAAPAQ--LASLRAVTGLDTP---ETIERFEATCPNATFWAT-FGQSETSGLST--- 312
Query: 135 SFAGSRN-IGSAGALAPGVEALIVSVDTQ-KPLPPNQLGEIWLRGPNMMRGYYNNEQATK 192
            FA  R+   SAG   P     +  VD + +PLPP ++GEI LRGP + +GY+NN  AT+
Sbjct: 313 -FAPYRDRPKSAGR--PLFWRTVAVVDAEDRPLPPGEVGEIVLRGPTVFKGYWNNAAATQ 369
Query: 193 LTIDKKGWVHTGDLGYFDGDGQLYVVDRI--KELIKYKGFQV 232
               + GW HTGD+G FD DG L+   R   KELIK  G  V
Sbjct: 370 HAF-RNGWHHTGDMGRFDADGYLFYAGRAPEKELIKTGGENV 410

>pdb|4FUQ|A Chain A, Crystal Structure Of Apo Matb From Rhodopseudomonas Palustris Length = 503

Iteration: 1
 Score =  100 bits (248), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 69/220 (31%), Positives = 103/220 (46%), Gaps = 6/220 (2%)
Query: 13  DYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLI 72
           D V +  LP++H  GL V +   L      I + KFD +  L      R T +  VP   
Sbjct: 196 DDVLIHALPIYHTHGLFVASNVTLFARGSXIFLPKFDPDKILDLXA--RATVLXGVPTFY 253
Query: 73  LALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVGYGLTETSGIATM 132
             L +   + K      +L  SG+APL  +   E +     A + +  YG TET+     
Sbjct: 254 TRLLQSPRLTKETTGHXRLFISGSAPLLADTHREWSAKTGHAVLER--YGXTETN--XNT 309
Query: 133 ENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQATK 192
            N + G R  G+ G   PGV A +   +T K LP   +G I ++GPN+ +GY+   + TK
Sbjct: 310 SNPYDGDRVPGAVGPALPGVSARVTDPETGKELPRGDIGXIEVKGPNVFKGYWRXPEKTK 369
Query: 193 LTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 232
                 G+  TGDLG  D  G ++++ R K+L+   GF V
Sbjct: 370 SEFRDDGFFITGDLGKIDERGYVHILGRGKDLVITGGFNV 409

>pdb|3G7S|A Chain A, Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Ligase (Fadd1) From Archaeoglobus Fulgidus Length = 549

Iteration: 1
 Score = 95.5 bits (236), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 69/226 (30%), Positives = 112/226 (49%), Gaps = 19/226 (8%)
Query: 21  PLFHV--FGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAK- 77
           P FH   FGL  +    +  G+  ++   F+ E     IEK++ T  W VPP +  L   
Sbjct: 229 PXFHSAEFGLVNLX---VTVGNEYVVXGXFNQEXLAENIEKYKGTFSWAVPPALNVLVNT 285
Query: 78  -HGLVKKFDLSSLKLVGSGAAPLGKELMEECAK------NVPSATVIQVGYGLTETSGIA 130
                K +D S LK+  +GA P+   L+E+  K      N P     Q+ +G TE     
Sbjct: 286 LESSNKTYDWSYLKVFATGAWPVAPALVEKLLKLAAEKCNNPRLRHNQI-WGXTEACPXV 344
Query: 131 TMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQA 190
           T        ++  + G     +E  ++S++  + L   + GEI +RGPN+ +GY+  E+ 
Sbjct: 345 TTNPPLRLDKST-TQGVPXSDIELKVISLEDGRELGVGESGEIVIRGPNIFKGYWKREKE 403
Query: 191 TKLT--IDKKG--WVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 232
            +     D+KG  +  TGD+G+ D +G L+  DR+KE+IKYKG+ +
Sbjct: 404 NQECWWYDEKGRKFFRTGDVGFIDEEGFLHFQDRVKEVIKYKGYTI 449

>pdb|4FUT|A Chain A, Crystal Structure Of Atp Bound Matb From Rhodopseudomonas Palustris Length = 503

Iteration: 1
 Score = 89.0 bits (219), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 64/220 (29%), Positives = 100/220 (45%), Gaps = 6/220 (2%)
Query: 13  DYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLI 72
           D V +  LP++H  GL V +   L     +I +  FD +  L  +   R T +  VP   
Sbjct: 196 DDVLIHALPIYHTHGLFVASNVTLFARGSMIFLPXFDPDXILDLMA--RATVLMGVPTFY 253
Query: 73  LALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVGYGLTETSGIATM 132
             L +   +       ++L  SG+APL  +   E +     A + +  YG+TET+     
Sbjct: 254 TRLLQSPRLTXETTGHMRLFISGSAPLLADTHREWSAXTGHAVLER--YGMTETN--MNT 309
Query: 133 ENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQATK 192
            N + G R  G+ G   PGV A +   +T   LP   +G I + GPN+  GY+   + T 
Sbjct: 310 SNPYDGDRVPGAVGPALPGVSARVTDPETGXELPRGDIGMIEVXGPNVFXGYWRMPEXTX 369
Query: 193 LTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 232
                 G+  TGDLG  D  G ++++ R  +L+   GF V
Sbjct: 370 SEFRDDGFFITGDLGXIDERGYVHILGRGXDLVITGGFNV 409

>pdb|4GXR|A Chain A, Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3 Length = 503

Iteration: 1
 Score = 89.0 bits (219), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 64/220 (29%), Positives = 100/220 (45%), Gaps = 6/220 (2%)
Query: 13  DYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLI 72
           D V +  LP++H  GL V +   L     +I +  FD +  L  +   R T +  VP   
Sbjct: 196 DDVLIHALPIYHTHGLFVASNVTLFARGSMIFLPXFDPDXILDLMA--RATVLMGVPTFY 253
Query: 73  LALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVGYGLTETSGIATM 132
             L +   +       ++L  SG+APL  +   E +     A + +  YG+TET+     
Sbjct: 254 TRLLQSPRLTXETTGHMRLFISGSAPLLADTHREWSAXTGHAVLER--YGMTETN--MNT 309
Query: 133 ENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQATK 192
            N + G R  G+ G   PGV A +   +T   LP   +G I + GPN+  GY+   + T 
Sbjct: 310 SNPYDGDRVPGAVGPALPGVSARVTDPETGXELPRGDIGMIEVXGPNVFXGYWRMPEXTX 369
Query: 193 LTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 232
                 G+  TGDLG  D  G ++++ R  +L+   GF V
Sbjct: 370 SEFRDDGFFITGDLGXIDERGYVHILGRGXDLVITGGFNV 409

>pdb|4GXQ|A Chain A, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1 Length = 506

Iteration: 1
 Score = 89.0 bits (219), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 64/220 (29%), Positives = 100/220 (45%), Gaps = 6/220 (2%)
Query: 13  DYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLI 72
           D V +  LP++H  GL V +   L     +I +  FD +  L  +   R T +  VP   
Sbjct: 196 DDVLIHALPIYHTHGLFVASNVTLFARGSMIFLPXFDPDXILDLMA--RATVLMGVPTFY 253
Query: 73  LALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVGYGLTETSGIATM 132
             L +   +       ++L  SG+APL  +   E +     A + +  YG+TET+     
Sbjct: 254 TRLLQSPRLTXETTGHMRLFISGSAPLLADTHREWSAXTGHAVLER--YGMTETN--MNT 309
Query: 133 ENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQATK 192
            N + G R  G+ G   PGV A +   +T   LP   +G I + GPN+  GY+   + T 
Sbjct: 310 SNPYDGDRVPGAVGPALPGVSARVTDPETGXELPRGDIGMIEVXGPNVFXGYWRMPEXTX 369
Query: 193 LTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 232
                 G+  TGDLG  D  G ++++ R  +L+   GF V
Sbjct: 370 SEFRDDGFFITGDLGXIDERGYVHILGRGXDLVITGGFNV 409

>pdb|3R44|A Chain A, Mycobacterium Tuberculosis Fatty Acyl Coa Synthetase Length = 517

Iteration: 1
 Score = 83.2 bits (204), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 64/218 (29%), Positives = 105/218 (48%), Gaps = 9/218 (4%)
Query: 16  FLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILAL 75
            L  LP+FHV  L  +    + +G  +I M +FD       I + RV     VP ++  +
Sbjct: 214 LLLPLPMFHVAALTTVIFSAM-RGVTLISMPQFDATKVWSLIVEERVCIGGAVPAILNFM 272
Query: 76  AKHGLVKKFDLSSLKLVGSGAAPLGKELME-ECAKNVPSATVIQVGYGLTETSGIATMEN 134
            +     + D    +   +G AP+ + L++   AKN+    V+Q GY LTE+ G  T+  
Sbjct: 273 RQVPEFAELDAPDFRYFITGGAPMPEALIKIYAAKNI---EVVQ-GYALTESCGGGTLLL 328
Query: 135 SFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQATKLT 194
           S    R  GSAG      +  +   D    +  +  GE+ ++   +++ Y+N  +AT+  
Sbjct: 329 SEDALRKAGSAGRATMFTDVAVRGDDGV--IREHGEGEVVIKSDILLKEYWNRPEATRDA 386
Query: 195 IDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 232
            D  GW  TGD+G  D +G LY+ DR+K++I   G  V
Sbjct: 387 FDN-GWFRTGDIGEIDDEGYLYIKDRLKDMIISGGENV 423

>pdb|1ULT|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8 Length = 541

Iteration: 1
 Score = 81.3 bits (199), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 68/233 (29%), Positives = 110/233 (47%), Gaps = 19/233 (8%)
Query: 15  VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILA 74
           V L V+P+FHV    +     L     ++   + D    +   +   VT    VP + LA
Sbjct: 221 VVLPVVPMFHVNAWCLPYAATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLA 280
Query: 75  LAKHGLVKKFDLSSLK--LVGSGAAPLGKELMEECAKNVPSATVIQVGYGLTETSGIATM 132
           LA +       L +L+  +VG  AAP  + L+    +       ++ GYGLTETS +   
Sbjct: 281 LADYLESTGHRLKTLRRLVVGGSAAP--RSLIARFER---MGVEVRQGYGLTETSPVVVQ 335
Query: 133 E------NSFAGSRNI---GSAGALAPGVEALIVSVDTQKPLPPN--QLGEIWLRGPNMM 181
                   S +    +      G   P V  L V+ +  +P+P +   LGE+ L+GP + 
Sbjct: 336 NFVKSHLESLSEEEKLTLKAKTGLPIPLVR-LRVADEEGRPVPKDGKALGEVQLKGPWIT 394
Query: 182 RGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTS 234
            GYY NE+AT+  +   G+  TGD+  +D +G + + DR+K+LIK  G  ++S
Sbjct: 395 GGYYGNEEATRSALTPDGFFRTGDIAVWDEEGYVEIKDRLKDLIKSGGEWISS 447

>pdb|3IPL|A Chain A, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase From Staphylococcus Aureus Subsp. Aureus Mu50 Length = 501

Iteration: 1
 Score = 80.1 bits (196), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 67/221 (30%), Positives = 111/221 (50%), Gaps = 27/221 (12%)
Query: 11  ELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPP 70
           + D  +L VLP++H+ GL+V+    ++ G  + ++ KF+ E  L  I+  R+THI +VP 
Sbjct: 202 DRDTNWLSVLPIYHISGLSVLLRAVIE-GFTVRIVDKFNAEQILTMIKNERITHISLVPQ 260
Query: 71  LILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAK-NVPSATVIQVGYGLTETSG- 128
            +  L + GL + ++L  + L   G A L   ++E   + N+P    I   +G+TET   
Sbjct: 261 TLNWLMQQGLHEPYNLQKILL---GGAKLSATMIETALQYNLP----IYNSFGMTETCSQ 313
Query: 129 --IATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQ-LGEIWLRGPNMMRGYY 185
              AT E   A    +G   A          +VD +   P  +  GE+ ++G N+M GY 
Sbjct: 314 FLTATPEMLHARPDTVGMPSA----------NVDVKIKNPNKEGHGELMIKGANVMNGYL 363
Query: 186 NNEQATKLT-IDKKGWVHTGDLGYFDGDGQLYVVDRIKELI 225
                T LT   + G+ +TGD+   D +G + + DR K+LI
Sbjct: 364 ---YPTDLTGTFENGYFNTGDIAEIDHEGYVMIYDRRKDLI 401

>pdb|3NYQ|A Chain A, Malonyl-Coa Ligase Ternary Product Complex With Methylmalonyl-Coa And Amp Bound Length = 505

Iteration: 1
 Score = 79.3 bits (194), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 68/228 (29%), Positives = 104/228 (45%), Gaps = 19/228 (8%)
Query: 15  VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILA 74
           V +  LPLFHV GL +   G L++G  +  + +F  E   R +     T ++ VP +   
Sbjct: 198 VLVQGLPLFHVHGLVLGILGPLRRGGSVRHLGRFSTEGAARELNDG-ATMLFGVPTMYHR 256
Query: 75  LAK-----HGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQV--GYGLTETS 127
           +A+       L K    + L + GS A P+         + + +AT  +V   YG+TET 
Sbjct: 257 IAETLPADPELAKALAGARLLVSGSAALPVHDH------ERIAAATGRRVIERYGMTET- 309
Query: 128 GIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQK--PLPPNQLGEIWLRGPNMMRGYY 185
            +        G    G+ G   PGVE  +V  D      L    +GEI +RGPN+   Y 
Sbjct: 310 -LMNTSVRADGEPRAGTVGVPLPGVELRLVEEDGTPIAALDGESVGEIQVRGPNLFTEYL 368
Query: 186 NNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDR-IKELIKYKGFQV 232
           N   AT     + G+  TGD+   D DG + +V R   +LIK  G+++
Sbjct: 369 NRPDATAAAFTEDGFFRTGDMAVRDPDGYVRIVGRKATDLIKSGGYKI 416

>pdb|3T5B|A Chain A, Crystal Structure Of N-Terminal Domain Of Facl13 From Mycobacterium Tuberculosis Length = 396

Iteration: 1
 Score = 74.7 bits (182), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 59/205 (28%), Positives = 97/205 (47%), Gaps = 9/205 (4%)
Query: 16  FLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILAL 75
            L  LP+FHV  L  +    + +G  +I M +FD       I + RV     VP ++  +
Sbjct: 200 LLLPLPMFHVAALTTVIFSAM-RGVTLISMPQFDATKVWSLIVEERVCIGGAVPAILNFM 258
Query: 76  AKHGLVKKFDLSSLKLVGSGAAPLGKELME-ECAKNVPSATVIQVGYGLTETSGIATMEN 134
            +     + D    +   +G AP+ + L++   AKN+    V+Q GY LTE+ G  T+  
Sbjct: 259 RQVPEFAELDAPDFRYFITGGAPMPEALIKIYAAKNI---EVVQ-GYALTESCGGGTLLL 314
Query: 135 SFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQATKLT 194
           S    R  GSAG      +  +   D    +  +  GE+ ++   +++ Y+N  +AT+  
Sbjct: 315 SEDALRKAGSAGRATMFTDVAVRGDDGV--IREHGEGEVVIKSDILLKEYWNRPEATRDA 372
Query: 195 IDKKGWVHTGDLGYFDGDGQLYVVD 219
            D  GW  TGD+G  D +G LY+ D
Sbjct: 373 FDN-GWFRTGDIGEIDDEGYLYIKD 396

>pdb|3PBK|A Chain A, Structural And Functional Studies Of Fatty Acyl-Adenylate Ligases From E. Coli And L. Pneumophila Length = 583

Iteration: 1
 Score = 72.4 bits (176), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 74/254 (29%), Positives = 110/254 (43%), Gaps = 42/254 (16%)
Query: 18  CV--LPLFHVFGLAVITCGQLQKGSCIILMAKFDLE----MFLRAIEKHRVTHIWVVPPL 71
           CV  LP +H  GL       +     +  +   D       +L+ I K+R T + V PP 
Sbjct: 220 CVSWLPFYHDXGLVGFLLTPVATQLSVDYLRTQDFAXRPLQWLKLISKNRGT-VSVAPPF 278
Query: 72  ILALAKHGLVKK----FDLSSLKLVGSGAAPLGKELME---ECAKNVP-SATVIQVGYGL 123
              L +  + +K     DLS  ++ G GA P+  E +    EC + V          YGL
Sbjct: 279 GYELCQRRVNEKDLAELDLSCWRVAGIGAEPISAEQLHQFAECFRQVNFDNKTFXPCYGL 338
Query: 124 TETSGIATMENSFAG------SRNI--GSAGALAPGVEALIVS--VDTQKPLPPNQL--- 170
            E +   +  +  +G       R+I      A+APG E   VS  V+  K LP + +   
Sbjct: 339 AENALAVSFSDEASGVVVNEVDRDILEYQGKAVAPGAETRAVSTFVNCGKALPEHGIEIR 398
Query: 171 ------------GEIWLRGPNMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVV 218
                       G I + GP++  GY+ + Q ++  I   GW+ TGDLGY   DG LYV 
Sbjct: 399 NEAGXPVAERVVGHICISGPSLXSGYFGD-QVSQDEIAATGWLDTGDLGYL-LDGYLYVT 456
Query: 219 DRIKELIKYKGFQV 232
            RIK+LI  +G  +
Sbjct: 457 GRIKDLIIIRGRNI 470

>pdb|3RG2|A Chain A, Structure Of A Two-Domain Nrps Fusion Protein Containing The Ente Adenylation Domain And Entb Aryl-Carrier Protein From Enterobactin Biosynthesis Length = 617

Iteration: 1
 Score = 72.0 bits (175), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 61/230 (26%), Positives = 105/230 (45%), Gaps = 20/230 (8%)
Query: 16  FLCVLPLFHVFGLAVI-TCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILA 74
           +LC +P  H + ++   + G    G  ++L A     +    IEKH+V    +VPP + +
Sbjct: 228 YLCAIPAAHNYAMSSPGSLGVFLAGGTVVLAADPSATLCFPLIEKHQVNVTALVPPAV-S 286
Query: 75  LAKHGLVK---KFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVGYGLTETSGIAT 131
           L    L++   +  L+SLKL+  G A L   L    A  +P+    ++G  L +  G+A 
Sbjct: 287 LWLQALIEGESRAQLASLKLLQVGGARLSATL----AARIPA----EIGCQLQQVFGMAE 338
Query: 132 MENSF-----AGSRNIGSAG-ALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYY 185
              ++     +  + I + G  + P  E  +   +   PLP  ++G +  RGP   RGYY
Sbjct: 339 GLVNYTRLDDSAEKIIHTQGYPMCPDDEVWVADAEG-NPLPQGEVGRLMTRGPYTFRGYY 397
Query: 186 NNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSN 235
            + Q      D  G+  +GDL   D +G + V  R K+ I   G ++ + 
Sbjct: 398 KSPQHNASAFDANGFYCSGDLISIDPEGYITVQGREKDQINRGGEKIAAE 447

>pdb|3O82|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter Baumannii Bound To 5'-O-[n-(2,3-Dihydroxybenzoyl)sulfamoyl] Adenosine Length = 544

Iteration: 1
 Score = 70.9 bits (172), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 59/223 (26%), Positives = 94/223 (42%), Gaps = 10/223 (4%)
Query: 16  FLCVLPLFHVFGLAVI-TCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILA 74
            LC LP  H F L+     G L  G C+++    +       I++H+V    +VP  ++ 
Sbjct: 235 LLCALPAPHNFMLSSPGALGVLHAGGCVVMAPNPEPLNCFSIIQRHQVNMASLVPSAVIM 294
Query: 75  LAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSA--TVIQVGYGLTETSGIATM 132
             +     K  + SLKL+  G    G    E  A+ VP      +Q  +G+ E  G+   
Sbjct: 295 WLEKAAQYKDQIQSLKLLQVG----GASFPESLARQVPEVLNCKLQQVFGMAE--GLVNY 348
Query: 133 ENSFAGSRNIGSAGALAPGVEALIVSVDTQ-KPLPPNQLGEIWLRGPNMMRGYYNNEQAT 191
                    I +        +  I  VD Q + +P  ++G +  RGP    GYY + +  
Sbjct: 349 TRLDDSDEQIFTTQGRPISSDDEIKIVDEQYREVPEGEIGMLATRGPYTFCGYYQSPEHN 408
Query: 192 KLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTS 234
               D+  + ++GDL     DG L VV RIK+ I   G ++ S
Sbjct: 409 SQVFDEDNYYYSGDLVQRTPDGNLRVVGRIKDQINRGGEKIAS 451

>pdb|1MDB|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb-adenylate Length = 539

Iteration: 1
 Score = 70.9 bits (172), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 59/225 (26%), Positives = 98/225 (43%), Gaps = 10/225 (4%)
Query: 15  VFLCVLPLFHVFGLAVI-TCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLIL 73
           V+L  LP+ H + L+     G L  G  ++L      +     IE+ +VT   +VPPL +
Sbjct: 225 VYLAALPMAHNYPLSSPGVLGVLYAGGRVVLSPSPSPDDAFPLIEREKVTITALVPPLAM 284
Query: 74  ALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQV---GYGLTETSGIA 130
                   ++ DLSSL+++  G A    E      K V   T+ QV     GL   + + 
Sbjct: 285 VWMDAASSRRDDLSSLQVLQVGGAKFSAEAARRV-KAVFGCTLQQVFGMAEGLVNYTRLD 343
Query: 131 TMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQA 190
             E     ++       ++P  E+ +   D  + + P + G +  RGP  +RGYY  E+ 
Sbjct: 344 DPEEIIVNTQ----GKPMSPYDESRVWD-DHDRDVKPGETGHLLTRGPYTIRGYYKAEEH 398
Query: 191 TKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSN 235
              +  + G+  TGD+     DG + V  R K+ I   G +V + 
Sbjct: 399 NAASFTEDGFYRTGDIVRLTRDGYIVVEGRAKDQINRGGEKVAAE 443

>pdb|1MD9|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb And Amp Length = 539

Iteration: 1
 Score = 68.2 bits (165), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 59/225 (26%), Positives = 93/225 (41%), Gaps = 10/225 (4%)
Query: 15  VFLCVLPLFHVFGLAVI-TCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLIL 73
           V+L  LP  H + L+     G L  G  ++L      +     IE+ +VT   +VPPL  
Sbjct: 225 VYLAALPXAHNYPLSSPGVLGVLYAGGRVVLSPSPSPDDAFPLIEREKVTITALVPPLAX 284
Query: 74  ALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQV---GYGLTETSGIA 130
                   ++ DLSSL+++  G A    E      K V   T+ QV     GL   + + 
Sbjct: 285 VWXDAASSRRDDLSSLQVLQVGGAKFSAEAARRV-KAVFGCTLQQVFGXAEGLVNYTRLD 343
Query: 131 TMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQA 190
             E        + + G      +   V  D  + + P + G +  RGP  +RGYY  E+ 
Sbjct: 344 DPEEII-----VNTQGKPXSPYDESRVWDDHDRDVKPGETGHLLTRGPYTIRGYYKAEEH 398
Query: 191 TKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSN 235
              +  + G+  TGD+     DG + V  R K+ I   G +V + 
Sbjct: 399 NAASFTEDGFYRTGDIVRLTRDGYIVVEGRAKDQINRGGEKVAAE 443

>pdb|3KXW|A Chain A, The Crystal Structure Of Fatty Acid Amp Ligase From Legionella Pneumophila Length = 590

Iteration: 1
 Score = 53.9 bits (128), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 34/101 (33%), Positives = 58/101 (57%), Gaps = 11/101 (10%)
Query: 133 ENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQAT- 191
           +++  GS  + S+G   P  E  I+  DT  P   +Q+GEIW++  ++ +GY+N  + T 
Sbjct: 364 DDNSPGSYKLVSSGN--PIQEVKIIDPDTLIPCDFDQVGEIWVQSNSVAKGYWNQPEETR 421
Query: 192 -----KLTIDKKG--WVHTGDLGYFDGDGQLYVVDRIKELI 225
                K+  D++   ++ TGDLG+   + +LYV  RIK+LI
Sbjct: 422 HAFAGKIKDDERSAIYLRTGDLGFLH-ENELYVTGRIKDLI 461

>pdb|2V7B|A Chain A, Crystal Structures Of A Benzoate Coa Ligase From Burkholderia Xenovorans Lb400 Length = 529

Iteration: 1
 Score = 50.8 bits (120), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 59/227 (25%), Positives = 102/227 (44%), Gaps = 12/227 (5%)
Query: 10  GELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLE--MFLRAIEKHRVTHIWV 67
            E D VF     LF  +GL       L  G+  ILMA+      +F R +E HR T  + 
Sbjct: 223 AENDVVF-SAAKLFFAYGLGNGLTFPLSVGATAILMAERPTADAIFARLVE-HRPTVFYG 280
Query: 68  VPPLIL-ALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVGYGLTET 126
           VP L    L    L  + D++ +++  S    L +E+ E    +      I  G G TE 
Sbjct: 281 VPTLYANMLVSPNLPARADVA-IRICTSAGEALPREIGERFTAHF--GCEILDGIGSTEM 337
Query: 127 SGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYN 186
             I    ++ AG+   G+ G   PG E + +  +    +P  ++G+++++GP+    Y+N
Sbjct: 338 LHI--FLSNRAGAVEYGTTGRPVPGYE-IELRDEAGHAVPDGEVGDLYIKGPSAAVMYWN 394
Query: 187 NEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVT 233
           N + ++ T   + W+ +GD      +G      R  +++K  G  V+
Sbjct: 395 NREKSRATFLGE-WIRSGDKYCRLPNGCYVYAGRSDDMLKVSGQYVS 440

>pdb|3ETC|A Chain A, 2.1 A Structure Of Acyl-Adenylate Synthetase From Methanosarcina Acetivorans Containing A Link Between Lys256 And Cys298 Length = 580

Iteration: 1
 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 50/208 (24%), Positives = 84/208 (40%), Gaps = 18/208 (8%)
Query: 34  GQLQKGSCIILMA--KFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSSLKL 91
           GQ   G  + +    +F+ +  L    K+ VT  +  PP I        +  ++ S+LK 
Sbjct: 287 GQWIAGCAVFVYDYDRFEAKNMLEKASKYGVT-TFCAPPTIYRFLIKEDLSHYNFSTLKY 345
Query: 92  VGSGAAPLGKELMEECAKNVPSATVIQVGYGLTETSGIATMENSFAGSRNIGSAGALAPG 151
                 PL  E+     +     T I++  G  +T  + T+          GS G   PG
Sbjct: 346 AVVAGEPLNPEVFNRFLE----FTGIKLMEGFGQTETVVTIATFPWMEPKPGSIGKPTPG 401
Query: 152 VEALIVSVDTQKPLPPNQLGEIWLRGPNMMRG-------YYNNEQATKLTIDKKGWVHTG 204
            +  ++  D  +     + GEI +   N M G       +Y  +          G+ HTG
Sbjct: 402 YKIELMDRDG-RLCEVGEEGEIVI---NTMEGKPVGLFVHYGKDPERTEETWHDGYYHTG 457
Query: 205 DLGYFDGDGQLYVVDRIKELIKYKGFQV 232
           D+ + D DG L+ V R  ++IK  G++V
Sbjct: 458 DMAWMDEDGYLWFVGRADDIIKTSGYKV 485

>pdb|2QVX|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATION, BOUND TO 3- Chlorobenzoate Length = 504

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 52/218 (23%), Positives = 95/218 (43%), Gaps = 17/218 (7%)
Query: 15  VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILA 74
           V L ++PL+HV G   +    L      +++ +F     L+ +++ +VT ++  P  + A
Sbjct: 198 VVLGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDA 257
Query: 75  LAKHGLV--KKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVGYGLTETSGIATM 132
           LA           L SL+ V    A +   ++E   +++P   V   GYG TE      M
Sbjct: 258 LAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHLPGEKV--NGYGTTEAMNSLYM 315
Query: 133 ENSFAGSRNIGSAGALAPGV--EALIVSV--DTQKPLPPNQLGEIWLRGPN-MMRGYYNN 187
                G+        +APG   E  IV +     + +   + GE+ +   +    GY N 
Sbjct: 316 RQPKTGTE-------MAPGFFSEVRIVRIGGGVDEIVANGEEGELIVAASDSAFVGYLNQ 368
Query: 188 EQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELI 225
            QAT   + + GW  T D+  +  +G + ++ R+ ++I
Sbjct: 369 PQATAEKL-QDGWYRTSDVAVWTPEGTVRILGRVDDMI 405

>pdb|2QVZ|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303A MUTATION, BOUND TO 3- Chlorobenzoate Length = 504

Iteration: 1
 Score = 47.4 bits (111), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 51/218 (23%), Positives = 94/218 (43%), Gaps = 17/218 (7%)
Query: 15  VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILA 74
           V L ++PL+HV G   +    L      +++ +F     L+ +++ +VT ++  P  + A
Sbjct: 198 VVLGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDA 257
Query: 75  LAKHGLV--KKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVGYGLTETSGIATM 132
           LA           L SL+ V    A +   ++E   +++P   V    YG TE      M
Sbjct: 258 LAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHLPGEKV--NAYGTTEAMNSLYM 315
Query: 133 ENSFAGSRNIGSAGALAPGV--EALIVSV--DTQKPLPPNQLGEIWLRGPN-MMRGYYNN 187
                G+        +APG   E  IV +     + +   + GE+ +   +    GY N 
Sbjct: 316 RQPKTGTE-------MAPGFFSEVRIVRIGGGVDEIVANGEEGELIVAASDSAFVGYLNQ 368
Query: 188 EQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELI 225
            QAT   + + GW  T D+  +  +G + ++ R+ ++I
Sbjct: 369 PQATAEKL-QDGWYRTSDVAVWTPEGTVRILGRVDDMI 405

>pdb|3L8C|A Chain A, Structure Of Probable D-Alanine--Poly(Phosphoribitol) Ligase Subunit-1 From Streptococcus Pyogenes Length = 521

Iteration: 1
 Score = 47.4 bits (111), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 44/143 (30%), Positives = 64/143 (44%), Gaps = 12/143 (8%)
Query: 100 GKELMEECAKNV----PSATVIQVGYGLTE-TSGIATMENSFAGSRNIGS--AGALAPGV 152
           G+EL    A+ +    PSA +I   YG TE T  ++ +E +     N      G   P  
Sbjct: 273 GEELTVSTARKLFERFPSAKIIN-AYGPTEATVALSAIEITREMVDNYTRLPIGYPKPDS 331
Query: 153 EALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQATK---LTIDKKGWVHTGDLGYF 209
              I+  D  K L   + GEI + GP + +GY NN + T     T   +   HTGD+G  
Sbjct: 332 PTYIIDEDG-KELSSGEQGEIIVTGPAVSKGYLNNPEKTAEAFFTFKGQPAYHTGDIGSL 390
Query: 210 DGDGQLYVVDRIKELIKYKGFQV 232
             D  L    R+   IKY G+++
Sbjct: 391 TEDNILLYGGRLDFQIKYAGYRI 413

>pdb|1T5D|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE BOUND TO 4-Chlorobenzoate Length = 504

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 51/218 (23%), Positives = 94/218 (43%), Gaps = 17/218 (7%)
Query: 15  VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILA 74
           V L ++PL+HV G   +    L      +++ +F     L+ +++ +VT ++  P  + A
Sbjct: 198 VVLGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDA 257
Query: 75  LAKHGLV--KKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVGYGLTETSGIATM 132
           LA           L SL+ V    A +   ++E   +++P   V    YG TE      M
Sbjct: 258 LAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHLPGEKVNI--YGTTEAMNSLYM 315
Query: 133 ENSFAGSRNIGSAGALAPGV--EALIVSV--DTQKPLPPNQLGEIWLRGPN-MMRGYYNN 187
                G+        +APG   E  IV +     + +   + GE+ +   +    GY N 
Sbjct: 316 RQPKTGTE-------MAPGFFSEVRIVRIGGGVDEIVANGEEGELIVAASDSAFVGYLNQ 368
Query: 188 EQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELI 225
            QAT   + + GW  T D+  +  +G + ++ R+ ++I
Sbjct: 369 PQATAEKL-QDGWYRTSDVAVWTPEGTVRILGRVDDMI 405

>pdb|3DLP|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, MUTANT D402P, BOUND To 4cb Length = 504

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 51/218 (23%), Positives = 94/218 (43%), Gaps = 17/218 (7%)
Query: 15  VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILA 74
           V L ++PL+HV G   +    L      +++ +F     L+ +++ +VT ++  P  + A
Sbjct: 198 VVLGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDA 257
Query: 75  LAKHGLV--KKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVGYGLTETSGIATM 132
           LA           L SL+ V    A +   ++E   +++P   V    YG TE      M
Sbjct: 258 LAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHLPGEKVNI--YGTTEAMNSLYM 315
Query: 133 ENSFAGSRNIGSAGALAPGV--EALIVSV--DTQKPLPPNQLGEIWLRGPN-MMRGYYNN 187
                G+        +APG   E  IV +     + +   + GE+ +   +    GY N 
Sbjct: 316 RQPKTGTE-------MAPGFFSEVRIVRIGGGVDEIVANGEEGELIVAASDSAFVGYLNQ 368
Query: 188 EQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELI 225
            QAT   + + GW  T D+  +  +G + ++ R+ ++I
Sbjct: 369 PQATAEKL-QDGWYRTSDVAVWTPEGTVRILGRVPDMI 405

>pdb|3E7W|A Chain A, Crystal Structure Of Dlta: Implications For The Reaction Mechanism Of Non-Ribosomal Peptide Synthetase (Nrps) Adenylation Domains Length = 511

Iteration: 1
 Score = 45.1 bits (105), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 39/130 (30%), Positives = 61/130 (46%), Gaps = 9/130 (6%)
Query: 109 KNVPSATVIQVGYGLTE-TSGIATME--NSFAGSRNIGSAGALAPGVEALIVSVDTQKPL 165
           +  P A +    YG TE T  + ++E  N           G   P +   I+  + Q PL
Sbjct: 282 ERFPKAKIFNT-YGPTEATVAVTSVEITNDVISRSESLPVGFAKPDMNIFIMDEEGQ-PL 339
Query: 166 PPNQLGEIWLRGPNMMRGYYNNEQAT-KLTIDKKG-WVH-TGDLGYFDGDGQLYVVDRIK 222
           P  + GEI + GP++ RGY    + T K     +G W + TGD G+   DGQ++   R+ 
Sbjct: 340 PEGEKGEIVIAGPSVSRGYLGEPELTEKAFFSHEGQWAYRTGDAGFIQ-DGQIFCQGRLD 398
Query: 223 ELIKYKGFQV 232
             IK  G+++
Sbjct: 399 FQIKLHGYRM 408

>pdb|3CW8|X Chain X, 4-chlorobenzoyl-coa Ligase/synthetase, Bound To 4cba-adenylate Length = 504

Iteration: 1
 Score = 44.7 bits (104), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 50/218 (22%), Positives = 94/218 (43%), Gaps = 17/218 (7%)
Query: 15  VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILA 74
           V L ++PL+HV G   +    L      +++ +F     L+ +++ +VT ++  P  + A
Sbjct: 198 VVLGLMPLYHVVGFFAVLVAALALDGTYVVIEEFRPVDALQLVQQEQVTSLFATPTHLDA 257
Query: 75  LAKHGLV--KKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVGYGLTETSGIATM 132
           LA           L SL+ V    A +   ++E   +++P   V    YG TE      M
Sbjct: 258 LAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHLPGEKVNI--YGTTEAMNSLYM 315
Query: 133 ENSFAGSRNIGSAGALAPGV--EALIVSV--DTQKPLPPNQLGEIWLRGPN-MMRGYYNN 187
                G+        +APG   E  IV +     + +   + GE+ +   +    GY N 
Sbjct: 316 RQPKTGTE-------MAPGFFSEVRIVRIGGGVDEIVANGEEGELIVAASDSAFVGYLNQ 368
Query: 188 EQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELI 225
            +AT   + + GW  T D+  +  +G + ++ R+ ++I
Sbjct: 369 PEATAEKL-QDGWYRTSDVAVWTPEGTVRILGRVDDMI 405

>pdb|2WD9|A Chain A, Crystal Structure Of Human Acyl-coa Synthetase Medium-chain Family Member 2a (l64p Mutation) In Complex With Ibuprofen Length = 569

Iteration: 1
 Score = 44.7 bits (104), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 52/204 (25%), Positives = 86/204 (42%), Gaps = 20/204 (9%)
Query: 39  GSC--IILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSSLKLVG-SG 95
           G+C  + L+ KFD  + L+ +  + +  +   P +   L +       DLSS K      
Sbjct: 273 GACTFVHLLPKFDPLVILKTLSSYPIKSMMGAPIVYRMLLQQ------DLSSYKFPHLQN 326
Query: 96  AAPLGKELMEECAKNVPSATVIQV--GYGLTETSGIATMENSFAGSRNIGSAGALAPGVE 153
              +G+ L+ E  +N  + T + +   YG TET G+  M +     +  G  G  A   +
Sbjct: 327 CVTVGESLLPETLENWRAQTGLDIRESYGQTET-GLTCMVSKTMKIKP-GYMGTAASCYD 384
Query: 154 ALIVSVDTQKPLPPNQLGEIWLRGP-----NMMRGYYNNEQATKLTIDKKGWVHTGDLGY 208
             I+  D    LPP   G+I +R        +  GY +N   T   I    W+  GD G 
Sbjct: 385 VQIID-DKGNVLPPGTEGDIGIRVKPIRPIGIFSGYVDNPDKTAANIRGDFWL-LGDRGI 442
Query: 209 FDGDGQLYVVDRIKELIKYKGFQV 232
            D DG    + R  ++I   G+++
Sbjct: 443 KDEDGYFQFMGRADDIINSSGYRI 466

>pdb|3B7W|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase Medium-Chain Family Member 2a, With L64p Mutation Length = 570

Iteration: 1
 Score = 44.3 bits (103), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 52/204 (25%), Positives = 86/204 (42%), Gaps = 20/204 (9%)
Query: 39  GSC--IILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSSLKLVG-SG 95
           G+C  + L+ KFD  + L+ +  + +  +   P +   L +       DLSS K      
Sbjct: 273 GACTFVHLLPKFDPLVILKTLSSYPIKSMMGAPIVYRMLLQQ------DLSSYKFPHLQN 326
Query: 96  AAPLGKELMEECAKNVPSATVIQV--GYGLTETSGIATMENSFAGSRNIGSAGALAPGVE 153
              +G+ L+ E  +N  + T + +   YG TET G+  M +     +  G  G  A   +
Sbjct: 327 CVTVGESLLPETLENWRAQTGLDIRESYGQTET-GLTCMVSKTMKIKP-GYMGTAASCYD 384
Query: 154 ALIVSVDTQKPLPPNQLGEIWLRGP-----NMMRGYYNNEQATKLTIDKKGWVHTGDLGY 208
             I+  D    LPP   G+I +R        +  GY +N   T   I    W+  GD G 
Sbjct: 385 VQIID-DKGNVLPPGTEGDIGIRVKPIRPIGIFSGYVDNPDKTAANIRGDFWL-LGDRGI 442
Query: 209 FDGDGQLYVVDRIKELIKYKGFQV 232
            D DG    + R  ++I   G+++
Sbjct: 443 KDEDGYFQFMGRADDIINSSGYRI 466

>pdb|1RY2|A Chain A, Crystal Structure Of Yeast Acetyl-Coenzyme A Synthetase In Complex With Amp Length = 663

Iteration: 1
 Score = 43.9 bits (102), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 52/247 (21%), Positives = 106/247 (42%), Gaps = 13/247 (5%)
Query: 1   MVTMDQETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILM----AKFDLEMFLRA 56
           ++TM        + VF     +  + G   +  G L  G   ++     A  +   +   
Sbjct: 292 LLTMRYTFDTHQEDVFFTAGDIGWITGHTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDI 351
Query: 57  IEKHRVTHIWVVPPLILALAKHG--LVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSA 114
           I++H+VT  +V P  +  L + G   ++   L SL+ +GS   P+  E+ E  ++ +   
Sbjct: 352 IDEHKVTQFYVAPTALRLLKRAGDSYIENHSLKSLRCLGSVGEPIAAEVWEWYSEKIGKN 411
Query: 115 TVIQVG-YGLTET-SGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQL-G 171
            +  V  Y  TE+ S + T           GSA     G++A+++  +T + L  +   G
Sbjct: 412 EIPIVDTYWQTESGSHLVTPLAGGVTPMKPGSASFPFFGIDAVVLDPNTGEELNTSHAEG 471
Query: 172 EIWLRG--PNMMRGYYNNEQATKLTI--DKKGWVHTGDLGYFDGDGQLYVVDRIKELIKY 227
            + ++   P+  R  + N      T      G+  TGD    D DG ++++ R+ +++  
Sbjct: 472 VLAVKAAWPSFARTIWKNHDRYLDTYLNPYPGYYFTGDGAAKDKDGYIWILGRVDDVVNV 531
Query: 228 KGFQVTS 234
            G ++++
Sbjct: 532 SGHRLST 538

>pdb|3T5A|A Chain A, Crystal Structure Of N-Terminal Domain Of Faal28 G330w Mutant From Mycobacterium Tuberculosis Length = 480

Iteration: 1
 Score = 41.2 bits (95), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 12/76 (15%)
Query: 156 IVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQATKLTIDKK-----------GWVHTG 204
           IV  DT    P   +GEIW+ G N+  GY+     ++ T   K            W+ TG
Sbjct: 406 IVDSDTCIECPDGTVGEIWVHGDNVANGYWQKPDESERTFGGKIVTPSPGTPEGPWLRTG 465
Query: 205 DLGYFDGDGQLYVVDR 220
           D G+   DG+++++ R
Sbjct: 466 DSGFVT-DGKMFIIGR 480

>pdb|4GR5|A Chain A, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp Length = 570

Iteration: 1
 Score = 40.8 bits (94), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 37/124 (29%), Positives = 53/124 (42%), Gaps = 13/124 (10%)
Query: 120 GYGLTETSGIATMENSFAGSRNIGSA---GALAPGVEALIVSVDTQKPLPPNQLGEIWLR 176
           GYG  E+ G  T     AG  + G+A   G    G  A ++  D  KP     LGE+++ 
Sbjct: 358 GYGPAESMGFTTHHAVVAGDLS-GTALPIGVPLAGKRAYVLD-DDLKPAANGALGELYVA 415
Query: 177 GPNMMRGYYNNEQ--ATKLTIDK------KGWVHTGDLGYFDGDGQLYVVDRIKELIKYK 228
           G  +  GY +     A +   D       +    TGDL     DG L  V R  + +K +
Sbjct: 416 GAGLAHGYVSRPALTAERFVADPFAGPGGERMYRTGDLARRRADGVLEYVGRADDQVKIR 475
Query: 229 GFQV 232
           GF+V
Sbjct: 476 GFRV 479

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	236
3ni2_A	536	4-coumarate:COA ligase; 4CL, phenylpropanoid biosy	1e-120
2d1s_A	548	Luciferase, luciferin 4-monooxygenase; alpha/beta,	1e-119
3rix_A	550	Luciferase, luciferin 4-monooxygenase; oxidoreduct	1e-118
3tsy_A	979	Fusion protein 4-coumarate--COA ligase 1, resvera	1e-118
3g7s_A	549	Long-chain-fatty-acid--COA ligase (FADD-1); protei	1e-104
4fuq_A	503	Malonyl COA synthetase; ANL superfamily, methylma	3e-80
3r44_A	517	Fatty acyl COA synthetase FADD13 (fatty-acyl-COA s	2e-77
3ipl_A	501	2-succinylbenzoate--COA ligase; structural genomic	1e-73
3ivr_A	509	Putative long-chain-fatty-acid COA ligase; structu	5e-73
1t5h_X	504	4-chlorobenzoyl COA ligase; adenylate-forming coen	3e-72
3nyq_A	505	Malonyl-COA ligase; A/B topology ababa sandwich be	3e-70
1mdb_A	539	2,3-dihydroxybenzoate-AMP ligase; adenylation doma	6e-69
3rg2_A	617	Enterobactin synthase component E (ENTE), 2,3-DIH	8e-69
3o83_A	544	Peptide arylation enzyme; ligase, adenylation of 2	1e-68
2v7b_A	529	Benzoate-coenzyme A ligase; benzoate oxidation, be	2e-63
3gqw_A	576	Fatty acid AMP ligase; FAAL, E. coli, ATP-dependen	1e-40
1v25_A	541	Long-chain-fatty-acid-COA synthetase; ligase, stru	4e-40
3kxw_A	590	Saframycin MX1 synthetase B; fatty acid AMP ligase	5e-40
3t5a_A	480	Long-chain-fatty-acid--AMP ligase FADD28; acetyl-C	5e-39
3c5e_A	570	Acyl-coenzyme A synthetase ACSM2A, mitochondrial;	3e-34
3etc_A	580	AMP-binding protein; adenylate-forming acyl-COA sy	1e-29
3hgu_A	369	EHPF; phenazine, antibiotic, biosynthetic protein;	2e-24
3ite_A	562	SIDN siderophore synthetase; ligase, non-ribosomal	3e-13
3l8c_A	521	D-alanine--poly(phosphoribitol) ligase subunit 1;	1e-12
2vsq_A	1304	Surfactin synthetase subunit 3; ligase, peptidyl c	2e-12
3fce_A	512	D-alanine--poly(phosphoribitol) ligase subunit 1;	3e-11
3e7w_A	511	D-alanine--poly(phosphoribitol) ligase subunit 1;	8e-11
1pg4_A	652	Acetyl-COA synthetase; AMP-forming, adenylate-form	5e-10
1ry2_A	663	Acetyl-coenzyme A synthetase 1, acyl-activating en	6e-10
1amu_A	563	GRSA, gramicidin synthetase 1; peptide synthetase,	2e-09
4dg8_A	620	PA1221; ANL superfamily, adenylation domain, pepti	8e-09
1qzv_F	154	Plant photosystem I: subunit PSAF; photosynthesis,	5e-05

>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A* Length = 536

 Score =  351 bits (903), Expect = e-120
 Identities = 103/221 (46%), Positives = 144/221 (65%), Gaps = 4/221 (1%)

Query: 15  VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILA 74
           V LCVLP+FH++ L  I    L+ G+ I++M KF++   L  IEK++V+   VVPP++++
Sbjct: 225 VILCVLPMFHIYALNSIMLCGLRVGAPILIMPKFEIGSLLGLIEKYKVSIAPVVPPVMMS 284

Query: 75  LAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVGYGLTETSGIATMEN 134
           +AK   + K DLSSL+++ SG APLGKEL +      P A + Q GYG+TE   +  M  
Sbjct: 285 IAKSPDLDKHDLSSLRMIKSGGAPLGKELEDTVRAKFPQARLGQ-GYGMTEAGPVLAMCL 343

Query: 135 SFA---GSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQAT 191
           +FA        G+ G +    E  IV  +T   LP NQ GEI +RG  +M+GY N+ +AT
Sbjct: 344 AFAKEPFDIKPGACGTVVRNAEMKIVDPETGASLPRNQPGEICIRGDQIMKGYLNDPEAT 403

Query: 192 KLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 232
             TIDK+GW+HTGD+GY D D +L++VDR+KELIKYKGFQV
Sbjct: 404 SRTIDKEGWLHTGDIGYIDDDDELFIVDRLKELIKYKGFQV 444

>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A* Length = 548

 Score =  348 bits (895), Expect = e-119
 Identities = 92/218 (42%), Positives = 139/218 (63%), Gaps = 4/218 (1%)

Query: 15  VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILA 74
             L V+P  H FG+   T G L  G  ++++ KFD E FL+ ++ ++ T + +VP L   
Sbjct: 238 AVLTVVPFHHGFGM-FTTLGYLICGFRVVMLTKFDEETFLKTLQDYKCTSVILVPTLFAI 296

Query: 75  LAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVGYGLTETSGIATMEN 134
           L K  L+ K+DLS+L  + SG APL KE+ E  A+      V Q GYGLTET+    +  
Sbjct: 297 LNKSELLNKYDLSNLVEIASGGAPLSKEVGEAVARRFNLPGVRQ-GYGLTETTSAIII-- 353

Query: 135 SFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQATKLT 194
           +  G    G++G + P  +A ++ +DT+K L PN+ GE+ ++GP +M+GY NN +ATK  
Sbjct: 354 TPEGDDKPGASGKVVPLFKAKVIDLDTKKSLGPNRRGEVCVKGPMLMKGYVNNPEATKEL 413

Query: 195 IDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 232
           ID++GW+HTGD+GY+D +   ++VDR+K LIKYKG+QV
Sbjct: 414 IDEEGWLHTGDIGYYDEEKHFFIVDRLKSLIKYKGYQV 451

>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} PDB: 1ba3_A 1lci_A* 3ies_A* 3iep_A* 3ier_A* 3qya_A Length = 550

 Score =  346 bits (891), Expect = e-118
 Identities = 94/218 (43%), Positives = 133/218 (61%), Gaps = 4/218 (1%)

Query: 15  VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILA 74
             L V+P  H FG+   T G L  G  ++LM +F+ E+FLR+++ +++    +VP L   
Sbjct: 236 AILSVVPFHHGFGM-FTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSF 294

Query: 75  LAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVGYGLTETSGIATMEN 134
            AK  L+ K+DLS+L  + SG APL KE+ E  AK      + Q GYGLTET+    +  
Sbjct: 295 FAKSTLIDKYDLSNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQ-GYGLTETTSAILI-- 351

Query: 135 SFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQATKLT 194
           +  G    G+ G + P  EA +V +DT K L  NQ GE+ +RGP +M GY NN +AT   
Sbjct: 352 TPEGDDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQRGELCVRGPMIMSGYVNNPEATNAL 411

Query: 195 IDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 232
           IDK GW+H+GD+ Y+D D   ++VDR+K LIKYKG+QV
Sbjct: 412 IDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQV 449

>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana} Length = 979

 Score =  358 bits (920), Expect = e-118
 Identities = 104/221 (47%), Positives = 142/221 (64%), Gaps = 4/221 (1%)

Query: 15  VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILA 74
           V LCVLP+FH++ L  I    L+ G+ I++M KF++ + L  I++ +VT   +VPP++LA
Sbjct: 272 VILCVLPMFHIYALNSIMLCGLRVGAAILIMPKFEINLLLELIQRCKVTVAPMVPPIVLA 331

Query: 75  LAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVGYGLTETSGIATMEN 134
           +AK    +K+DLSS+++V SGAAPLGKEL +      P+A + Q GYG+TE   +  M  
Sbjct: 332 IAKSSETEKYDLSSIRVVKSGAAPLGKELEDAVNAKFPNAKLGQ-GYGMTEAGPVLAMSL 390

Query: 135 SFA---GSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQAT 191
            FA        G+ G +    E  IV  DT   L  NQ GEI +RG  +M+GY NN  AT
Sbjct: 391 GFAKEPFPVKSGACGTVVRNAEMKIVDPDTGDSLSRNQPGEICIRGHQIMKGYLNNPAAT 450

Query: 192 KLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 232
             TIDK GW+HTGD+G  D D +L++VDR+KELIKYKGFQV
Sbjct: 451 AETIDKDGWLHTGDIGLIDDDDELFIVDRLKELIKYKGFQV 491

>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304} Length = 549

 Score =  310 bits (797), Expect = e-104
 Identities = 66/230 (28%), Positives = 112/230 (48%), Gaps = 15/230 (6%)

Query: 15  VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILA 74
             +  +P+FH     ++    +  G+  ++M  F+ EM    IEK++ T  W VPP +  
Sbjct: 223 TIVGCMPMFHSAEFGLVNLM-VTVGNEYVVMGMFNQEMLAENIEKYKGTFSWAVPPALNV 281

Query: 75  LAK--HGLVKKFDLSSLKLVGSGAAPLGKELMEECAK------NVPSATVIQVGYGLTET 126
           L        K +D S LK+  +GA P+   L+E+  K      N P     Q  +G+TE 
Sbjct: 282 LVNTLESSNKTYDWSYLKVFATGAWPVAPALVEKLLKLAAEKCNNPRLRHNQ-IWGMTEA 340

Query: 127 SGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYN 186
             + T  N         + G     +E  ++S++  + L   + GEI +RGPN+ +GY+ 
Sbjct: 341 CPMVTT-NPPLRLDKSTTQGVPMSDIELKVISLEDGRELGVGESGEIVIRGPNIFKGYWK 399

Query: 187 NEQATKLTI----DKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 232
            E+  +         + +  TGD+G+ D +G L+  DR+KE+IKYKG+ +
Sbjct: 400 REKENQECWWYDEKGRKFFRTGDVGFIDEEGFLHFQDRVKEVIKYKGYTI 449

>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* Length = 503

 Score =  248 bits (635), Expect = 3e-80
 Identities = 68/218 (31%), Positives = 107/218 (49%), Gaps = 6/218 (2%)

Query: 15  VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILA 74
           V +  LP++H  GL V +   L     +I + KFD +  L  +   R T +  VP     
Sbjct: 198 VLIHALPIYHTHGLFVASNVTLFARGSMIFLPKFDPDKILDLMA--RATVLMGVPTFYTR 255

Query: 75  LAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVGYGLTETSGIATMEN 134
           L +   + K     ++L  SG+APL  +   E +       V++  YG+TET+   +  N
Sbjct: 256 LLQSPRLTKETTGHMRLFISGSAPLLADTHREWSA-KTGHAVLE-RYGMTETNMNTS--N 311

Query: 135 SFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQATKLT 194
            + G R  G+ G   PGV A +   +T K LP   +G I ++GPN+ +GY+   + TK  
Sbjct: 312 PYDGDRVPGAVGPALPGVSARVTDPETGKELPRGDIGMIEVKGPNVFKGYWRMPEKTKSE 371

Query: 195 IDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 232
               G+  TGDLG  D  G ++++ R K+L+   GF V
Sbjct: 372 FRDDGFFITGDLGKIDERGYVHILGRGKDLVITGGFNV 409

>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A Length = 517

 Score =  240 bits (616), Expect = 2e-77
 Identities = 62/218 (28%), Positives = 101/218 (46%), Gaps = 7/218 (3%)

Query: 15  VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILA 74
             L  LP+FHV  L  +      +G  +I M +FD       I + RV     VP ++  
Sbjct: 213 RLLLPLPMFHVAALTTVIFS-AMRGVTLISMPQFDATKVWSLIVEERVCIGGAVPAILNF 271

Query: 75  LAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVGYGLTETSGIATMEN 134
           + +     + D    +   +G AP+ + L++  A    +  V+Q GY LTE+ G  T+  
Sbjct: 272 MRQVPEFAELDAPDFRYFITGGAPMPEALIKIYAA--KNIEVVQ-GYALTESCGGGTLLL 328

Query: 135 SFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQATKLT 194
           S    R  GSAG      +  +   D        + GE+ ++   +++ Y+N  +AT+  
Sbjct: 329 SEDALRKAGSAGRATMFTDVAVRGDDGV-IREHGE-GEVVIKSDILLKEYWNRPEATRDA 386

Query: 195 IDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 232
            D  GW  TGD+G  D +G LY+ DR+K++I   G  V
Sbjct: 387 FD-NGWFRTGDIGEIDDEGYLYIKDRLKDMIISGGENV 423

>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp} Length = 501

 Score =  230 bits (590), Expect = 1e-73
 Identities = 56/219 (25%), Positives = 101/219 (46%), Gaps = 17/219 (7%)

Query: 15  VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILA 74
            +L VLP++H+ GL+V+    + +G  + ++ KF+ E  L  I+  R+THI +VP  +  
Sbjct: 206 NWLSVLPIYHISGLSVLLRA-VIEGFTVRIVDKFNAEQILTMIKNERITHISLVPQTLNW 264

Query: 75  LAKHGLVKKFDLSSLKLVGSGAAPLGKELMEEC-AKNVPSATVIQVGYGLTETSGIATME 133
           L + G     +  +L+ +  G A L   ++E     N+P   +    +G+TET       
Sbjct: 265 LMQQG---LHEPYNLQKILLGGAKLSATMIETALQYNLP---IYN-SFGMTETCSQFLTA 317

Query: 134 NSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQATKL 193
                     + G  +  V+  I + +          GE+ ++G N+M GY      T  
Sbjct: 318 TPEMLHARPDTVGMPSANVDVKIKNPN------KEGHGELMIKGANVMNGYLYPTDLTGT 371

Query: 194 TIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 232
             +  G+ +TGD+   D +G + + DR K+LI   G  +
Sbjct: 372 FEN--GYFNTGDIAEIDHEGYVMIYDRRKDLIISGGENI 408

>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} Length = 509

 Score =  229 bits (586), Expect = 5e-73
 Identities = 80/220 (36%), Positives = 109/220 (49%), Gaps = 14/220 (6%)

Query: 15  VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILA 74
           V L +LPLFHV GL ++     Q G   ++ AKFD     R IE H+VT +    P++  
Sbjct: 203 VNLGMLPLFHVTGLGLML-TLQQAGGASVIAAKFDPAQAARDIEAHKVTVMAEFAPMLGN 261

Query: 75  LAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVGYGLTETSGIATMEN 134
           +          L+SL+ V     P   E  E      P+AT     +G +ETSG++T   
Sbjct: 262 ILDQ--AAPAQLASLRAVTGLDTPETIERFEAT---CPNATFWA-TFGQSETSGLSTF-- 313

Query: 135 SFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQATKLT 194
                    SAG         +V  + + PLPP ++GEI LRGP + +GY+NN  AT+  
Sbjct: 314 -APYRDRPKSAGRPLFWRTVAVVDAEDR-PLPPGEVGEIVLRGPTVFKGYWNNAAATQHA 371

Query: 195 IDKKGWVHTGDLGYFDGDGQLYVVDRI--KELIKYKGFQV 232
             + GW HTGD+G FD DG L+   R   KELIK  G  V
Sbjct: 372 F-RNGWHHTGDMGRFDADGYLFYAGRAPEKELIKTGGENV 410

>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X* Length = 504

 Score =  227 bits (581), Expect = 3e-72
 Identities = 49/223 (21%), Positives = 92/223 (41%), Gaps = 13/223 (5%)

Query: 15  VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILA 74
           V L ++PL+HV G   +    L      +++ +F     L+ +++ +VT ++  P  + A
Sbjct: 198 VVLGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDA 257

Query: 75  LAKHGLV--KKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVGYGLTETSGIATM 132
           LA           L SL+ V    A +   ++E   +++P    +   YG TE      M
Sbjct: 258 LAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHLP-GEKVN-IYGTTEAMNSLYM 315

Query: 133 ENSFAGSRNIGSAGALAPGVEALIVSVDT--QKPLPPNQLGEIWLRGPN-MMRGYYNNEQ 189
                     G+  A     E  IV +     + +   + GE+ +   +    GY N  Q
Sbjct: 316 R-----QPKTGTEMAPGFFSEVRIVRIGGGVDEIVANGEEGELIVAASDSAFVGYLNQPQ 370

Query: 190 ATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 232
           AT   +   GW  T D+  +  +G + ++ R+ ++I   G  +
Sbjct: 371 ATAEKLQ-DGWYRTSDVAVWTPEGTVRILGRVDDMIISGGENI 412

>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A* Length = 505

 Score =  222 bits (567), Expect = 3e-70
 Identities = 68/224 (30%), Positives = 102/224 (45%), Gaps = 11/224 (4%)

Query: 15  VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILA 74
           V +  LPLFHV GL +   G L++G  +  + +F  E   R +     T ++ VP +   
Sbjct: 198 VLVQGLPLFHVHGLVLGILGPLRRGGSVRHLGRFSTEGAARELN-DGATMLFGVPTMYHR 256

Query: 75  LAKHGLVKKF---DLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVGYGLTETSGIAT 131
           +A+           L+  +L+ SG+A L     E  A       VI+  YG+TET    +
Sbjct: 257 IAETLPADPELAKALAGARLLVSGSAALPVHDHERIAA-ATGRRVIE-RYGMTETLMNTS 314

Query: 132 MENSFAGSRNIGSAGALAPGVEALIVSVDTQ--KPLPPNQLGEIWLRGPNMMRGYYNNEQ 189
                 G    G+ G   PGVE  +V  D      L    +GEI +RGPN+   Y N   
Sbjct: 315 --VRADGEPRAGTVGVPLPGVELRLVEEDGTPIAALDGESVGEIQVRGPNLFTEYLNRPD 372

Query: 190 ATKLTIDKKGWVHTGDLGYFDGDGQLYVVDR-IKELIKYKGFQV 232
           AT     + G+  TGD+   D DG + +V R   +LIK  G+++
Sbjct: 373 ATAAAFTEDGFFRTGDMAVRDPDGYVRIVGRKATDLIKSGGYKI 416

>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A Length = 539

 Score =  219 bits (561), Expect = 6e-69
 Identities = 55/213 (25%), Positives = 92/213 (43%), Gaps = 6/213 (2%)

Query: 15  VFLCVLPLFHVFGLAVI-TCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLIL 73
           V+L  LP+ H + L+     G L  G  ++L      +     IE+ +VT   +VPPL +
Sbjct: 225 VYLAALPMAHNYPLSSPGVLGVLYAGGRVVLSPSPSPDDAFPLIEREKVTITALVPPLAM 284

Query: 74  ALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVGYGLTETSGIATME 133
                   ++ DLSSL+++  G A    E            T+ QV +G+ E     T  
Sbjct: 285 VWMDAASSRRDDLSSLQVLQVGGAKFSAEAARRVKAVFG-CTLQQV-FGMAEGLVNYTR- 341

Query: 134 NSFAGSRNIGSAG-ALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQATK 192
                   + + G  ++P  E+ +     +  + P + G +  RGP  +RGYY  E+   
Sbjct: 342 LDDPEEIIVNTQGKPMSPYDESRVWDDHDR-DVKPGETGHLLTRGPYTIRGYYKAEEHNA 400

Query: 193 LTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELI 225
            +  + G+  TGD+     DG + V  R K+ I
Sbjct: 401 ASFTEDGFYRTGDIVRLTRDGYIVVEGRAKDQI 433

>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli} Length = 617

 Score =  221 bits (565), Expect = 8e-69
 Identities = 56/215 (26%), Positives = 92/215 (42%), Gaps = 8/215 (3%)

Query: 15  VFLCVLPLFHVFGLAVI-TCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLIL 73
            +LC +P  H + ++   + G    G  ++L A     +    IEKH+V    +VPP + 
Sbjct: 227 RYLCAIPAAHNYAMSSPGSLGVFLAGGTVVLAADPSATLCFPLIEKHQVNVTALVPPAVS 286

Query: 74  ALAKHGL--VKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVGYGLTETSGIAT 131
              +  +    +  L+SLKL+  G A L   L       +     +Q  +G+ E     T
Sbjct: 287 LWLQALIEGESRAQLASLKLLQVGGARLSATLAARIPAEIG--CQLQQVFGMAEGLVNYT 344

Query: 132 MENSFAGSRNIGSAG-ALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQA 190
                +  + I + G  + P  E  +   +   PLP  ++G +  RGP   RGYY + Q 
Sbjct: 345 R-LDDSAEKIIHTQGYPMCPDDEVWVADAEGN-PLPQGEVGRLMTRGPYTFRGYYKSPQH 402

Query: 191 TKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELI 225
                D  G+  +GDL   D +G + V  R K+ I
Sbjct: 403 NASAFDANGFYCSGDLISIDPEGYITVQGREKDQI 437

>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} PDB: 3o82_A* 3o84_A* Length = 544

 Score =  218 bits (559), Expect = 1e-68
 Identities = 55/215 (25%), Positives = 91/215 (42%), Gaps = 10/215 (4%)

Query: 15  VFLCVLPLFHVFGLAVI-TCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLIL 73
             LC LP  H F L+     G L  G C+++    +       I++H+V    +VP  ++
Sbjct: 234 RLLCALPAPHNFMLSSPGALGVLHAGGCVVMAPNPEPLNCFSIIQRHQVNMASLVPSAVI 293

Query: 74  ALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSAT--VIQVGYGLTETSGIAT 131
              +     K  + SLKL+  G A   + L  +    VP      +Q  +G+ E     T
Sbjct: 294 MWLEKAAQYKDQIQSLKLLQVGGASFPESLARQ----VPEVLNCKLQQVFGMAEGLVNYT 349

Query: 132 MENSFAGSRNIGSAG-ALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQA 190
                +  +   + G  ++   E  IV    +  +P  ++G +  RGP    GYY + + 
Sbjct: 350 -RLDDSDEQIFTTQGRPISSDDEIKIVDEQYR-EVPEGEIGMLATRGPYTFCGYYQSPEH 407

Query: 191 TKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELI 225
                D+  + ++GDL     DG L VV RIK+ I
Sbjct: 408 NSQVFDEDNYYYSGDLVQRTPDGNLRVVGRIKDQI 442

>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans} Length = 529

 Score =  205 bits (524), Expect = 2e-63
 Identities = 49/221 (22%), Positives = 91/221 (41%), Gaps = 11/221 (4%)

Query: 15  VFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVPPLIL 73
           V      LF  +GL       L  G+  ILMA +   +     + +HR T  + VP L  
Sbjct: 227 VVFSAAKLFFAYGLGNGLTFPLSVGATAILMAERPTADAIFARLVEHRPTVFYGVPTLYA 286

Query: 74  ALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQV--GYGLTETSGIAT 131
            +     +      ++++  S    L +E+ E            ++  G G TE   I  
Sbjct: 287 NMLVSPNLPARADVAIRICTSAGEALPREIGERFTA----HFGCEILDGIGSTEMLHIFL 342

Query: 132 MENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQAT 191
             ++ AG+   G+ G   PG E  +   +    +P  ++G+++++GP+    Y+NN + +
Sbjct: 343 --SNRAGAVEYGTTGRPVPGYEIELRD-EAGHAVPDGEVGDLYIKGPSAAVMYWNNREKS 399

Query: 192 KLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 232
           + T     W+ +GD      +G      R  +++K  G  V
Sbjct: 400 RATF-LGEWIRSGDKYCRLPNGCYVYAGRSDDMLKVSGQYV 439

>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A* Length = 541

 Score =  143 bits (363), Expect = 4e-40
 Identities = 62/228 (27%), Positives = 101/228 (44%), Gaps = 25/228 (10%)

Query: 15  VFLCVLPLFHV----FGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPP 70
           V L V+P+FHV       A    G       ++   + D    +   +   VT    VP 
Sbjct: 221 VVLPVVPMFHVNAWCLPYAATLVG----AKQVLPGPRLDPASLVELFDGEGVTFTAGVPT 276

Query: 71  LILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAK-NVPSATVIQVGYGLTETSGI 129
           + LALA +       L +L+ +  G +   + L+    +  V    V Q  YGLTETS +
Sbjct: 277 VWLALADYLESTGHRLKTLRRLVVGGSAAPRSLIARFERMGVE---VRQG-YGLTETSPV 332

Query: 130 ATMENSFAGSRNI---------GSAGALAPGVEALIVSVDTQKPLPPN--QLGEIWLRGP 178
                  +   ++            G   P V   +   +  +P+P +   LGE+ L+GP
Sbjct: 333 VVQNFVKSHLESLSEEEKLTLKAKTGLPIPLVRLRVAD-EEGRPVPKDGKALGEVQLKGP 391

Query: 179 NMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIK 226
            +  GYY NE+AT+  +   G+  TGD+  +D +G + + DR+K+LIK
Sbjct: 392 WITGGYYGNEEATRSALTPDGFFRTGDIAVWDEEGYVEIKDRLKDLIK 439

>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A* Length = 590

 Score =  143 bits (364), Expect = 5e-40
 Identities = 59/249 (23%), Positives = 95/249 (38%), Gaps = 45/249 (18%)

Query: 20  LPLFHVFGLAVITCGQLQKGSCIILMAKFDLEM----FLRAIEKHRVTHIWVVPP----L 71
           LP  H  GL       +  G   I+M+ F        +L+ I K++ T     P      
Sbjct: 215 LPPHHDMGLIGCILTPIYGGIQAIMMSPFSFLQNPLSWLKHITKYKATISGS-PNFAYDY 273

Query: 72  ILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEE-CAKNVP---SATVIQVGYGLTETS 127
            +   +    +  DLSS     +GA P+ +E ME                   YGL E +
Sbjct: 274 CVKRIREEKKEGLDLSSWVTAFNGAEPVREETMEHFYQAFKEFGFRKEAFYPCYGLAEAT 333

Query: 128 GIATMENSFAGSRNI-----------------GSAGALA------PGVEALIVSVDTQKP 164
            + T     +  + +                  S G+        P  E  I+  DT  P
Sbjct: 334 LLVTGGTPGSSYKTLTLAKEQFQDHRVHFADDNSPGSYKLVSSGNPIQEVKIIDPDTLIP 393

Query: 165 LPPNQLGEIWLRGPNMMRGYYNNEQATKLTI--------DKKGWVHTGDLGYFDGDGQLY 216
              +Q+GEIW++  ++ +GY+N  + T+               ++ TGDLG+   + +LY
Sbjct: 394 CDFDQVGEIWVQSNSVAKGYWNQPEETRHAFAGKIKDDERSAIYLRTGDLGFLH-ENELY 452

Query: 217 VVDRIKELI 225
           V  RIK+LI
Sbjct: 453 VTGRIKDLI 461

>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A Length = 480

 Score =  139 bits (352), Expect = 5e-39
 Identities = 45/262 (17%), Positives = 84/262 (32%), Gaps = 47/262 (17%)

Query: 4   MDQETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDL----EMFLRAIEK 59
            D +     +   +  LP +H  GL +  C  +  G   +L +          ++  +  
Sbjct: 221 ADTDGIPPPNSALVSWLPFYHDMGLVIGICAPILGGYPAVLTSPVSFLQRPARWMHLMAS 280

Query: 60  HRVTHIWVVPP----LILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEE-CAKNVP-- 112
                    P     L         +   DL ++  + SG+  +    ++    +     
Sbjct: 281 DFHAFSAA-PNFAFELAARRTTDDDMAGRDLGNILTILSGSERVQAATIKRFADRFARFN 339

Query: 113 -SATVIQVGYGLTETSGIATMENSFAGSR---------NIGSAGALAPGVEALIVSV--- 159
               VI+  Y L E +                      + G A   A G    ++S    
Sbjct: 340 LQERVIRPSYWLAEATVYVATSKPGQPPETVDFDTESLSAGHAKPCAGGGATSLISYMLP 399

Query: 160 ----------DTQKPLPPNQLGEIWLRGPNMMRGYYNNEQATKLTI-----------DKK 198
                     DT    P   +GEIW+ G N+  GY+     ++ T             + 
Sbjct: 400 RSPIVRIVDSDTCIECPDGTVGEIWVHGDNVANGYWQKPDESERTFGGKIVTPSPGTPEG 459

Query: 199 GWVHTGDLGYFDGDGQLYVVDR 220
            W+ TGD G+   DG+++++ R
Sbjct: 460 PWLRTGDSGFVT-DGKMFIIGR 480

>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A* Length = 570

 Score =  127 bits (322), Expect = 3e-34
 Identities = 43/222 (19%), Positives = 76/222 (34%), Gaps = 20/222 (9%)

Query: 15  VFLCVLPLFHVFGLAVITCGQLQKGSCIIL--MAKFDLEMFLRAIEKHRVTHIWVVPPLI 72
           +   +     +  +          G+C  +  + KFD  + L+ +  + +    +  P++
Sbjct: 249 IMWTISDTGWILNILCSLMEPWALGACTFVHLLPKFDPLVILKTLSSYPIK-SMMGAPIV 307

Query: 73  L-ALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAK--NVPSATVIQVGYGLTETSGI 129
              L +  L   +    L+   +    L  E +E       +     I+  YG TET   
Sbjct: 308 YRMLLQQDL-SSYKFPHLQNCVTVGESLLPETLENWRAQTGLD----IRESYGQTETGLT 362

Query: 130 ATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEI-----WLRGPNMMRGY 184
                S       G  G  A   +  I+       LPP   G+I      +R   +  GY
Sbjct: 363 --CMVSKTMKIKPGYMGTAASCYDVQIIDDKGN-VLPPGTEGDIGIRVKPIRPIGIFSGY 419

Query: 185 YNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIK 226
            +N   T   I +  +   GD G  D DG    + R  ++I 
Sbjct: 420 VDNPDKTAANI-RGDFWLLGDRGIKDEDGYFQFMGRADDIIN 460

>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans} Length = 580

 Score =  114 bits (289), Expect = 1e-29
 Identities = 50/202 (24%), Positives = 82/202 (40%), Gaps = 18/202 (8%)

Query: 34  GQLQKGSCIIL--MAKFDLEMFLRAIEKHRVTHIWVVPPLIL-ALAKHGLVKKFDLSSLK 90
           GQ   G  + +    +F+ +  L    K+ VT  +  PP I   L K  L   ++ S+LK
Sbjct: 287 GQWIAGCAVFVYDYDRFEAKNMLEKASKYGVT-TFCAPPTIYRFLIKEDL-SHYNFSTLK 344

Query: 91  LVGSGAAPLGKELMEECAKNVPSATVIQVGYGLTETSGIATMENSFAGSRN-IGSAGALA 149
                  PL  E+     +       +  G+G TET  +     +F       GS G   
Sbjct: 345 YAVVAGEPLNPEVFNRFLEFT--GIKLMEGFGQTET-VV--TIATFPWMEPKPGSIGKPT 399

Query: 150 PGVEALIVSVDTQKPLPPNQLGEIWLRGPN-----MMRGYYNNEQATKLTIDKKGWVHTG 204
           PG +  ++     +     + GEI +         +   Y  + + T+ T    G+ HTG
Sbjct: 400 PGYKIELMD-RDGRLCEVGEEGEIVINTMEGKPVGLFVHYGKDPERTEETW-HDGYYHTG 457

Query: 205 DLGYFDGDGQLYVVDRIKELIK 226
           D+ + D DG L+ V R  ++IK
Sbjct: 458 DMAWMDEDGYLWFVGRADDIIK 479

>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A* Length = 369

 Score = 98.3 bits (244), Expect = 2e-24
 Identities = 27/215 (12%), Positives = 55/215 (25%), Gaps = 27/215 (12%)

Query: 15  VFLCVLPLF-HVFGLAVITCGQLQKGSCIIL---------------------MAKFDLEM 52
             L  +P   H+ G           G    +                          ++ 
Sbjct: 137 NTLAAIPTGPHIVGAINKERALRLGGMFFSIDIDPRWVKRSLSEGDTATVRKYTHHLVDQ 196

Query: 53  FLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVP 112
               +    +  +   PP++  L K   V      SL  +  G   L  + ++  A  + 
Sbjct: 197 VQNTLMNQDIRFLVTTPPVLRELLKRPEVVLQMKQSLAQITLGGTELNLDEIKFIASEIL 256

Query: 113 SATVIQVGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGE 172
                   YG T   G++                + +P +   +V   T + +   + G 
Sbjct: 257 PDCEFSASYGSTSALGVS-RSLLITSESQQVIYDSFSPFITYDVVDSITAQTVEYGERGN 315

Query: 173 IW---LRGPNMMRGYYNNEQATKLTIDKKGWVHTG 204
           +    L            + A +L     G+    
Sbjct: 316 VIVTHLSPWAFYPRVAERDTAIRLP-GVSGFAGDR 349

>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii} Length = 562

 Score = 67.3 bits (165), Expect = 3e-13
 Identities = 38/207 (18%), Positives = 71/207 (34%), Gaps = 23/207 (11%)

Query: 33  CGQLQKGSCIILMAK-FDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSSLKL 91
               + G C +   +   L+   R   +  VTH  +VP L+            D   L  
Sbjct: 243 FLAWRFGLCAVTGERLSMLDDLPRTFRELGVTHAGIVPSLLDQTGLVPE----DAPHLVY 298

Query: 92  VGSGAAPLGKELMEECAKNVPSATVIQVGYGLTETSGIATME--NSFAGSRNIGSAGALA 149
           +G G   +     +  + +     ++   YG TE +   +       + +R IG      
Sbjct: 299 LGVGGEKMTPRTQQIWSSS-DRVALVN-VYGPTEVTIGCSAGRILPDSDTRCIGHP---L 353

Query: 150 PGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQATKLTID------KKGWVHT 203
               A +++  + + +     GE+ + G  +  GY N   A            +     T
Sbjct: 354 GDSVAHVLAPGSNEHVKKGMAGELVIEGSLVANGYLNRPDAKGFCDINGRKMYR-----T 408

Query: 204 GDLGYFDGDGQLYVVDRIKELIKYKGF 230
           GD+   D D  +  + R  E +K +G 
Sbjct: 409 GDIVRMDADSSILFLGRKDEQVKVRGQ 435

>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A* Length = 521

 Score = 65.6 bits (161), Expect = 1e-12
 Identities = 45/212 (21%), Positives = 69/212 (32%), Gaps = 27/212 (12%)

Query: 36  LQKGSCIILMAK---FDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSSLKLV 92
           L  G  +  + K    D +     I +  V      P             +  + +L   
Sbjct: 210 LALGGTLFALPKELVADFKQLFTTIAQLPVGIWTSTPSFADMAMLSDDFCQAKMPALTHF 269

Query: 93  GSGAAPLGKELMEECAKNVPSATVIQVGYGLTETSGIATM------ENSFAGSRNIGSAG 146
                 L      +  +  PSA +I   YG TE +   +                IG   
Sbjct: 270 YFDGEELTVSTARKLFERFPSAKIINA-YGPTEATVALSAIEITREMVDNYTRLPIGYP- 327

Query: 147 ALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQATKLTIDKKGWV----- 201
              P     I+  D +  L   + GEI + GP + +GY NN +    T +   +      
Sbjct: 328 --KPDSPTYIIDEDGK-ELSSGEQGEIIVTGPAVSKGYLNNPE---KTAEA--FFTFKGQ 379

Query: 202 ---HTGDLGYFDGDGQLYVVDRIKELIKYKGF 230
              HTGD+G    D  L    R+   IKY G+
Sbjct: 380 PAYHTGDIGSLTEDNILLYGGRLDFQIKYAGY 411

>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis} Length = 1304

 Score = 65.3 bits (160), Expect = 2e-12
 Identities = 42/216 (19%), Positives = 74/216 (34%), Gaps = 36/216 (16%)

Query: 36  LQKGSCIILMAK---FDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSSLKLV 92
           +   + +I+  +    D E     I +  V  ++    L   L   G      +  L+ +
Sbjct: 669 MLNAARLIIADEHTLLDTERLTDLILQENVNVMFATTALFNLLTDAGED---WMKGLRCI 725

Query: 93  GSGAAPLGKELMEECAKNVPSATVIQVGYGLTETSGIATM-----ENSFAGSRNIGSAGA 147
             G        + +  + +    +I   YG TE +  AT            S  IG    
Sbjct: 726 LFGGERASVPHVRKALRIMGPGKLIN-CYGPTEGTVFATAHVVHDLPDSISSLPIGKP-- 782

Query: 148 LAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQATKLTIDK---------- 197
                   I++  +Q   P   +GE+ + G  + +GY N      LT +K          
Sbjct: 783 -ISNASVYILNEQSQ-LQPFGAVGELCISGMGVSKGYVNRAD---LTKEKFIENPFKPGE 837

Query: 198 ---KGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGF 230
              +    TGDL  +  DG +    RI + +K +G 
Sbjct: 838 TLYR----TGDLARWLPDGTIEYAGRIDDQVKIRGH 869

>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A* Length = 512

 Score = 61.4 bits (150), Expect = 3e-11
 Identities = 40/199 (20%), Positives = 66/199 (33%), Gaps = 32/199 (16%)

Query: 36  LQKGSCIILMAK---FDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSSLKLV 92
           L  G  +  + K      +    ++E+  +      P             +  L ++K  
Sbjct: 207 LVTGGTLWAIDKDMIARPKDLFASLEQSDIQVWTSTPSFAEMCLMEASFSESMLPNMKTF 266

Query: 93  GSGAAPLGKELMEECAKNVPSATVIQVGYGLTETSGIATM------ENSFAGSRNIGSAG 146
                 L  E+  +  +  P AT++   YG TE +   T             S  +G   
Sbjct: 267 LFCGEVLPNEVARKLIERFPKATIMNT-YGPTEATVAVTGIHVTEEVLDQYKSLPVGYC- 324

Query: 147 ALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQATKLTIDK--------- 197
                   LI+  D     P  + GEI + GP++  GY  + +   LT            
Sbjct: 325 --KSDCRLLIMKEDGT-IAPDGEKGEIVIVGPSVSVGYLGSPE---LTEKAFTMIDGERA 378

Query: 198 -KGWVHTGDLGYFDGDGQL 215
            K    TGD GY + +G L
Sbjct: 379 YK----TGDAGYVE-NGLL 392

>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A* Length = 511

 Score = 60.2 bits (147), Expect = 8e-11
 Identities = 42/200 (21%), Positives = 70/200 (35%), Gaps = 34/200 (17%)

Query: 36  LQKGSCIILMAK---FDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSSLKLV 92
           LQ G  +  + K      ++    ++K  +      P  +          +  L      
Sbjct: 206 LQSGGTLHCVTKDAVNKPKVLFEELKKSGLNVWTSTPSFVQMCLMDPGFSQDLLPHADTF 265

Query: 93  GSGAAPLGKELMEECAKNVPSATVIQVGYGLTETSGIATM------ENSFAGSRNIGSAG 146
                 L   + +   +  P A +    YG TE +   T         S + S  +G A 
Sbjct: 266 MFCGEVLPVSVAKALLERFPKAKIFNT-YGPTEATVAVTSVEITNDVISRSESLPVGFA- 323

Query: 147 ALAPGVEALIVSVDTQ-KPLPPNQLGEIWLRGPNMMRGYYNNEQATKLTIDK-------- 197
              P +   I  +D + +PLP  + GEI + GP++ RGY    +   LT           
Sbjct: 324 --KPDMNIFI--MDEEGQPLPEGEKGEIVIAGPSVSRGYLGEPE---LTEKAFFSHEGQW 376

Query: 198 --KGWVHTGDLGYFDGDGQL 215
             +    TGD G+   DGQ+
Sbjct: 377 AYR----TGDAGFIQ-DGQI 391

>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A* Length = 652

 Score = 58.0 bits (141), Expect = 5e-10
 Identities = 43/187 (22%), Positives = 70/187 (37%), Gaps = 38/187 (20%)

Query: 57  IEKHRVTHIWVVPPLILALAKHG--LVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSA 114
           ++KH+V  ++  P  I AL   G   ++  D SSL+++GS   P+          N P A
Sbjct: 346 VDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEPI----------N-PEA 394

Query: 115 -----TVIQVGYGL---------TETSGIATMENSFAGSRNI--GSAGALAPGVEALIVS 158
                    +G            TET G   M     G+  +  GSA     GV+  +V 
Sbjct: 395 WEWYWKK--IGKEKCPVVDTWWQTETGGF--MITPLPGAIELKAGSATRPFFGVQPALVD 450

Query: 159 VDTQKPLPPNQLGEIWLRG--PNMMRGYYNNEQATKLT--IDKKGWVHTGDLGYFDGDGQ 214
            +   P      G + +    P   R  + + +  + T     K    +GD    D DG 
Sbjct: 451 -NEGHPQEGATEGNLVITDSWPGQARTLFGDHERFEQTYFSTFKNMYFSGDGARRDEDGY 509

Query: 215 LYVVDRI 221
            ++  R+
Sbjct: 510 YWITGRV 516

>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1 Length = 663

 Score = 58.0 bits (141), Expect = 6e-10
 Identities = 42/187 (22%), Positives = 67/187 (35%), Gaps = 51/187 (27%)

Query: 57  IEKHRVTHIWVVPPLILALAKHG--LVKKFDLSSLKLVGSGAAPL------------GKE 102
           I++H+VT  +V P  +  L + G   ++   L SL+ +GS   P+            GK 
Sbjct: 352 IDEHKVTQFYVAPTALRLLKRAGDSYIENHSLKSLRCLGSVGEPIAAEVWEWYSEKIGK- 410

Query: 103 LMEECAKNVPSATVI-----QVGYGLTETSGIATMENSFAGSRNI---GSAGALAPGVEA 154
              E          I     Q     TE+     +    AG       GSA     G++A
Sbjct: 411 --NEIP--------IVDTYWQ-----TESGSH--LVTPLAGGVTPMKPGSASFPFFGIDA 453

Query: 155 LIVSVDTQKPLPPNQLGEI------WLRGPNMMRGYYNNEQATKLT--IDKKGWVHTGDL 206
           +++  +T + L  +    +      W   P+  R  + N      T      G+  TGD 
Sbjct: 454 VVLDPNTGEELNTSHAEGVLAVKAAW---PSFARTIWKNHDRYLDTYLNPYPGYYFTGDG 510

Query: 207 GYFDGDG 213
              D DG
Sbjct: 511 AAKDKDG 517

>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1 Length = 563

 Score = 56.0 bits (136), Expect = 2e-09
 Identities = 41/200 (20%), Positives = 74/200 (37%), Gaps = 41/200 (20%)

Query: 36  LQKGSCIILMAK---FDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSSLKLV 92
           L  G+ + ++ K    D   F + I +  +T I + P  ++ L          + S++ +
Sbjct: 245 LLTGASLYIILKDTINDFVKFEQYINQKEITVITLPPTYVVHLDPE------RILSIQTL 298

Query: 93  GSGAAPLGKELMEECAKNVPSATVIQVGYGLTETSGIATM----ENSFAGSRNIGSAGAL 148
            +  +     L+ +  + V         YG TET+  AT     + +   S  IG+    
Sbjct: 299 ITAGSATSPSLVNKWKEKVT----YINAYGPTETTICATTWVATKETIGHSVPIGAP--- 351

Query: 149 APGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQATKLTIDK----------- 197
               +  IV  + Q      + GE+ + G  + RGY+   +   LT  K           
Sbjct: 352 IQNTQIYIVDENLQ-LKSVGEAGELCIGGEGLARGYWKRPE---LTSQKFVDNPFVPGEK 407

Query: 198 --KGWVHTGDLGYFDGDGQL 215
             K    TGD   +  DG +
Sbjct: 408 LYK----TGDQARWLSDGNI 423

>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A* Length = 620

 Score = 54.4 bits (132), Expect = 8e-09
 Identities = 39/202 (19%), Positives = 66/202 (32%), Gaps = 35/202 (17%)

Query: 49  DLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECA 108
           D  +  + I +      W+   L   L          L  L+ + +G   L    +    
Sbjct: 241 DPGVLRQLIGERGADSAWLTASLFNTLVDLDPD---CLGGLRQLLTGGDILSVPHVRRAL 297

Query: 109 KNVPSATVIQVGYGLTETSGIATM-----ENSFAGSRNIGSAGALAPGVEALIVSVDTQK 163
              P   ++  GYG TE +          ++       IG A     G   L++    Q 
Sbjct: 298 LRHPRLHLVN-GYGPTENTTFTCCHVVTDDDLEEDDIPIGKA---IAGTAVLLLDEHGQ- 352

Query: 164 PLP-PNQLGEIWLRGPNMMRGYYNNEQATKLTIDK--------------KGWVHTGDLGY 208
            +  P++ GEI   G  + +GY N+      T                 +    TGD   
Sbjct: 353 EIAEPDRAGEIVAFGAGLAQGYRNDAA---RTRASFVELPYRGRLLRAYR----TGDRAR 405

Query: 209 FDGDGQLYVVDRIKELIKYKGF 230
           +D  G+L  + R    +K  G+
Sbjct: 406 YDEQGRLRFIGRGDGQVKLNGY 427

>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154

 Score = 41.5 bits (96), Expect = 5e-05
 Identities = 14/53 (26%), Positives = 18/53 (33%), Gaps = 27/53 (50%)

Query: 81  VKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVGYGLTETSGIATME 133
           +KK   +SLKL    +AP               A  I+           ATME
Sbjct: 22  LKKLQ-ASLKLYADDSAP---------------ALAIK-----------ATME 47

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	236
3ni2_A	536	4-coumarate:COA ligase; 4CL, phenylpropanoid biosy	100.0
3rix_A	550	Luciferase, luciferin 4-monooxygenase; oxidoreduct	100.0
2d1s_A	548	Luciferase, luciferin 4-monooxygenase; alpha/beta,	100.0
4fuq_A	503	Malonyl COA synthetase; ANL superfamily, methylma	100.0
1mdb_A	539	2,3-dihydroxybenzoate-AMP ligase; adenylation doma	100.0
1pg4_A	652	Acetyl-COA synthetase; AMP-forming, adenylate-form	100.0
3tsy_A	979	Fusion protein 4-coumarate--COA ligase 1, resvera	100.0
3etc_A	580	AMP-binding protein; adenylate-forming acyl-COA sy	100.0
3o83_A	544	Peptide arylation enzyme; ligase, adenylation of 2	100.0
3g7s_A	549	Long-chain-fatty-acid--COA ligase (FADD-1); protei	100.0
3c5e_A	570	Acyl-coenzyme A synthetase ACSM2A, mitochondrial;	100.0
1v25_A	541	Long-chain-fatty-acid-COA synthetase; ligase, stru	100.0
3r44_A	517	Fatty acyl COA synthetase FADD13 (fatty-acyl-COA s	100.0
3fce_A	512	D-alanine--poly(phosphoribitol) ligase subunit 1;	100.0
3e7w_A	511	D-alanine--poly(phosphoribitol) ligase subunit 1;	100.0
1t5h_X	504	4-chlorobenzoyl COA ligase; adenylate-forming coen	100.0
1ry2_A	663	Acetyl-coenzyme A synthetase 1, acyl-activating en	100.0
2v7b_A	529	Benzoate-coenzyme A ligase; benzoate oxidation, be	100.0
4gr5_A	570	Non-ribosomal peptide synthetase; MBTH-like domain	100.0
4dg8_A	620	PA1221; ANL superfamily, adenylation domain, pepti	100.0
3nyq_A	505	Malonyl-COA ligase; A/B topology ababa sandwich be	100.0
3rg2_A	617	Enterobactin synthase component E (ENTE), 2,3-DIH	100.0
3l8c_A	521	D-alanine--poly(phosphoribitol) ligase subunit 1;	100.0
3ipl_A	501	2-succinylbenzoate--COA ligase; structural genomic	100.0
1amu_A	563	GRSA, gramicidin synthetase 1; peptide synthetase,	100.0
3ivr_A	509	Putative long-chain-fatty-acid COA ligase; structu	100.0
3kxw_A	590	Saframycin MX1 synthetase B; fatty acid AMP ligase	100.0
3gqw_A	576	Fatty acid AMP ligase; FAAL, E. coli, ATP-dependen	100.0
3ite_A	562	SIDN siderophore synthetase; ligase, non-ribosomal	100.0
2vsq_A	1304	Surfactin synthetase subunit 3; ligase, peptidyl c	100.0
3t5a_A	480	Long-chain-fatty-acid--AMP ligase FADD28; acetyl-C	100.0
3qov_A	436	Phenylacetate-coenzyme A ligase; acetyl-COA synthe	100.0
2y27_A	437	Phenylacetate-coenzyme A ligase; phenylacetic acid	100.0
2y4o_A	443	Phenylacetate-coenzyme A ligase; phenylacetic acid	100.0
4gs5_A	358	Acyl-COA synthetase (AMP-forming)/AMP-acid ligase	100.0
3hgu_A	369	EHPF; phenazine, antibiotic, biosynthetic protein;	99.95
4eql_A	581	4-substituted benzoates-glutamate ligase GH3.12; f	98.61
4b2g_A	609	GH3-1 auxin conjugating enzyme; signaling protein,	98.61
4epl_A	581	Jasmonic acid-amido synthetase JAR1; ANL adenylati	98.5

>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*

Probab=100.00  E-value=2.2e-44  Score=308.99  Aligned_cols=229  Identities=44%  Similarity=0.722  Sum_probs=210.1

Q ss_pred             eccCCCCcEEEEecChhhHHhHHHHHHHHhhcCcEEEEcCCCCHHHHHHHHHhcCceEEEeChHHHHHHHhcCCcCCCCC
Q 026609            7 ETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDL   86 (236)
Q Consensus         7 ~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l   86 (236)
                      .++..++|++++.+|++|.+++...++.++..|+++++.+.+++..+++.++++++|.+.++|+++..|++.......++
T Consensus       217 ~~~~~~~d~~l~~~p~~h~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l  296 (536)
T 3ni2_A          217 NLYFHSEDVILCVLPMFHIYALNSIMLCGLRVGAPILIMPKFEIGSLLGLIEKYKVSIAPVVPPVMMSIAKSPDLDKHDL  296 (536)
T ss_dssp             SSCCCTTCCEEECSCTTSHHHHHHTHHHHHHHTCCEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTCSCGGGSCC
T ss_pred             cccCCCCCEEEEecChHHHHHHHHHHHHHHhcCCEEEEcCCCCHHHHHHHHHHhCCeEEEccHHHHHHHHhCcccccCCC
Confidence            45678899999999999999997778999999999999999999999999999999999999999999999887777789


Q ss_pred             CCceEEeecCCCCCHHHHHHHHHhCCCCceeecccccccccccccccc---CCCCCCCCCCccccCCCcEEEEEeCCCCC
Q 026609           87 SSLKLVGSGAAPLGKELMEECAKNVPSATVIQVGYGLTETSGIATMEN---SFAGSRNIGSAGALAPGVEALIVSVDTQK  163 (236)
Q Consensus        87 ~~lr~i~~~G~~~~~~~~~~~~~~~~~~~v~~~~YG~tE~g~~~~~~~---~~~~~~~~~~~g~p~~~~~~~~~~~~~~~  163 (236)
                      +++|.++++|+++++++.++|++.+++..+++ .||+||++.+++.+.   ........+.+|+|+++++++++|+++++
T Consensus       297 ~~lr~i~~gGe~l~~~~~~~~~~~~~~~~l~~-~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~  375 (536)
T 3ni2_A          297 SSLRMIKSGGAPLGKELEDTVRAKFPQARLGQ-GYGMTEAGPVLAMCLAFAKEPFDIKPGACGTVVRNAEMKIVDPETGA  375 (536)
T ss_dssp             TTCCEEEEESSCCCHHHHHHHHHHCTTSEEEE-EEECGGGSSEEEECGGGSSSCCCCCTTCCCEECSSCEEEEECTTTCC
T ss_pred             ccceEEEECCCCCCHHHHHHHHHHCCCCCccc-cccccccchhhhcccccCCccccCCCCCeeEeCCCcEEEEEeCCCCc
Confidence            99999999999999999999999997788998 999999987665432   12224456789999999999999988899


Q ss_pred             CCCCCCceEEEEecCccchhhcCCcccccccccCCCeEecCceEEEcCCCcEEEEcccCCceeeccEEeecCC
Q 026609          164 PLPPNQLGEIWLRGPNMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSNW  236 (236)
Q Consensus       164 ~~~~g~~Gel~v~~~~~~~~~~~~~~~~~~~~~~~~~~~TgD~~~~~~~g~~~~~GR~~d~i~~~G~~i~p~~  236 (236)
                      +++.|+.|||+|+|+.++.||+++++.+...|..+|||+|||++++++||++++.||+||+||++|++|+|.|
T Consensus       376 ~~~~g~~GEl~v~g~~v~~GY~~~p~~t~~~~~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~e  448 (536)
T 3ni2_A          376 SLPRNQPGEICIRGDQIMKGYLNDPEATSRTIDKEGWLHTGDIGYIDDDDELFIVDRLKELIKYKGFQVAPAE  448 (536)
T ss_dssp             BCCTTCCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEEECSCCEEETTEEECHHH
T ss_pred             CCCCCCccEEEEeCcccchhhcCChhHHHhhccCCCceEcccEEEEcCCceEEEEecccceEEECCEEECHHH
Confidence            9999999999999999999999999999999988999999999999999999999999999999999999865

>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A

Probab=100.00  E-value=1.1e-43  Score=305.52  Aligned_cols=225  Identities=42%  Similarity=0.682  Sum_probs=190.2

Q ss_pred             ccCCCCcEEEEecChhhHHhHHHHHHHHhhcCcEEEEcCCCCHHHHHHHHHhcCceEEEeChHHHHHHHhcCCcCCCCCC
Q 026609            8 TAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLS   87 (236)
Q Consensus         8 ~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~   87 (236)
                      .+..++|++++.+|++|.+|+ ..++.++..|+++++.+.+++..+++.++++++|.++++|+++..|++.......+++
T Consensus       229 ~~~~~~~~~l~~~p~~~~~g~-~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~  307 (550)
T 3rix_A          229 NQIIPDTAILSVVPFHHGFGM-FTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLIDKYDLS  307 (550)
T ss_dssp             CCCCTTCEEEECSCTTSHHHH-HHHHHHHHHTCEEEECSSCCHHHHHHHHHHTTCSEEEECHHHHHHHHHCCGGGGSCCT
T ss_pred             ccCCCCcEEEEechHHHHHHH-HHHHHHHHcCCEEEEeCCCCHHHHHHHHHHcCCeEEEeCcHHHHHHHhCccccccCcc
Confidence            467788999999999999999 6778899999999999999999999999999999999999999999998777777899


Q ss_pred             CceEEeecCCCCCHHHHHHHHHhCCCCceeeccccccccccccccccCCCCCCCCCCccccCCCcEEEEEeCCCCCCCCC
Q 026609           88 SLKLVGSGAAPLGKELMEECAKNVPSATVIQVGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPP  167 (236)
Q Consensus        88 ~lr~i~~~G~~~~~~~~~~~~~~~~~~~v~~~~YG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~  167 (236)
                      ++|.++++|+++++++.++|.+.++...+.+ .||+||++..++.....  ....+.+|+|+++++++++|++++++++.
T Consensus       308 ~lr~i~~gG~~l~~~~~~~~~~~~~~~~v~~-~YG~TE~~~~~~~~~~~--~~~~~~vG~~~~~~~~~i~d~~~~~~~~~  384 (550)
T 3rix_A          308 NLHEIASGGAPLSKEVGEAVAKRFHLPGIRQ-GYGLTETTSAILITPEG--DDKPGAVGKVVPFFEAKVVDLDTGKTLGV  384 (550)
T ss_dssp             TCCEEEECSSCCCHHHHHHHHHHTTCSCCEE-EEECGGGSSEEEECCTT--CCCTTEEEEECTTCEEEEECTTTCCBCCT
T ss_pred             cccEEEEecCCCCHHHHHHHHHHcCCCcccc-ccCcCccccceecCCCC--CCCCCCcccccCCcEEEEEeCCCCcCCCC
Confidence            9999999999999999999999998545777 99999999877654432  45567899999999999999888999999


Q ss_pred             CCceEEEEecCccchhhcCCcccccccccCCCeEecCceEEEcCCCcEEEEcccCCceeeccEEeecCC
Q 026609          168 NQLGEIWLRGPNMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSNW  236 (236)
Q Consensus       168 g~~Gel~v~~~~~~~~~~~~~~~~~~~~~~~~~~~TgD~~~~~~~g~~~~~GR~~d~i~~~G~~i~p~~  236 (236)
                      |+.|||+|+|+.++.||+++++.+...|+.+|||+|||++++++||++++.||+||+||++|++|+|.|
T Consensus       385 g~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~e  453 (550)
T 3rix_A          385 NQRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAE  453 (550)
T ss_dssp             TCCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECTTCCEEEC------------------
T ss_pred             CCCeEEEEeCCCcchhhcCChhhhhhhcCCCCCeecCcEEEEeCCceEEEEecchheeEECCEEECHHH
Confidence            999999999999999999999999999988999999999999999999999999999999999999986

>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*

Probab=100.00  E-value=1.9e-43  Score=303.85  Aligned_cols=225  Identities=39%  Similarity=0.677  Sum_probs=204.9

Q ss_pred             ccCCCCcEEEEecChhhHHhHHHHHHHHhhcCcEEEEcCCCCHHHHHHHHHhcCceEEEeChHHHHHHHhcCCcCCCCCC
Q 026609            8 TAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLS   87 (236)
Q Consensus         8 ~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~   87 (236)
                      ++..++|++++.+|++|.+|+...++.++ .|+++++.+.+++..+++.++++++|+++++|+++..|.+.......+++
T Consensus       231 ~~~~~~d~~l~~~p~~h~~g~~~~~~~~l-~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~  309 (548)
T 2d1s_A          231 NQVSPGTAVLTVVPFHHGFGMFTTLGYLI-CGFRVVMLTKFDEETFLKTLQDYKCTSVILVPTLFAILNKSELLNKYDLS  309 (548)
T ss_dssp             CCCCTTCEEEECSCTTSHHHHHHHHHHHH-TTCEEEECCCCCHHHHHHHHHHTTEEEEEECHHHHHHHHHCSCGGGSCCT
T ss_pred             cCCCccceEEEeccHHHHHHHHHHHHHHh-cCcEEEEcCCCCHHHHHHHHHHcCCcEEEecHHHHHHHHhCccccccccc
Confidence            56788999999999999999965577777 99999999999999999999999999999999999999988766666889


Q ss_pred             CceEEeecCCCCCHHHHHHHHHhCCCCceeeccccccccccccccccCCCCCCCCCCccccCCCcEEEEEeCCCCCCCCC
Q 026609           88 SLKLVGSGAAPLGKELMEECAKNVPSATVIQVGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPP  167 (236)
Q Consensus        88 ~lr~i~~~G~~~~~~~~~~~~~~~~~~~v~~~~YG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~  167 (236)
                      ++|.++++|+++++++.++|.+.+++..+++ .||+||++.+++.....  ....+.+|+|+++++++++|+++++++++
T Consensus       310 ~lr~i~~gG~~l~~~~~~~~~~~~~~~~i~~-~YG~TE~~~~~~~~~~~--~~~~~~~G~~~~~~~~~i~d~~~~~~~~~  386 (548)
T 2d1s_A          310 NLVEIASGGAPLSKEVGEAVARRFNLPGVRQ-GYGLTETTSAIIITPEG--DDKPGASGKVVPLFKAKVIDLDTKKSLGP  386 (548)
T ss_dssp             TCCEEEECSSCCCHHHHHHHHHHTTCSCCEE-EEECGGGSSEEEECCTT--CCCTTCCBEECTTCEEEEECTTTCCBCCT
T ss_pred             ceeEEEEcCccCCHHHHHHHHHHcCCCceee-ccccccccceeeecCcc--cCCCCCCCccCCCceEEEEeCCcCccCCC
Confidence            9999999999999999999999997678888 99999998776653222  34567899999999999999778999999


Q ss_pred             CCceEEEEecCccchhhcCCcccccccccCCCeEecCceEEEcCCCcEEEEcccCCceeeccEEeecCC
Q 026609          168 NQLGEIWLRGPNMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSNW  236 (236)
Q Consensus       168 g~~Gel~v~~~~~~~~~~~~~~~~~~~~~~~~~~~TgD~~~~~~~g~~~~~GR~~d~i~~~G~~i~p~~  236 (236)
                      |+.|||+++|+.++.||+++++.+...|..+|||+|||+++++++|++++.||+||+||++|++|+|.|
T Consensus       387 g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDl~~~~~dG~l~~~GR~~d~ik~~G~~v~p~e  455 (548)
T 2d1s_A          387 NRRGEVCVKGPMLMKGYVNNPEATKELIDEEGWLHTGDIGYYDEEKHFFIVDRLKSLIKYKGYQVPPAE  455 (548)
T ss_dssp             TCCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECTTCCEEEEEEGGGCBCBTTCCBCHHH
T ss_pred             CCCeEEEECCHHHhhhhcCChHHhhhcccCCcEEEccCEEEEcCCCeEEEeccccceEEECCEEECHHH
Confidence            999999999999999999999999998878999999999999999999999999999999999999865

>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*

Probab=100.00  E-value=2.8e-43  Score=299.98  Aligned_cols=226  Identities=30%  Similarity=0.451  Sum_probs=206.2

Q ss_pred             eeeccCCCCcEEEEecChhhHHhHHHHHHHHhhcCcEEEEcCCCCHHHHHHHHHhcCceEEEeChHHHHHHHhcCCcCCC
Q 026609            5 DQETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKF   84 (236)
Q Consensus         5 ~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~   84 (236)
                      ...++..++|++++.+|++|.+|+...++.+++.|+++++.+.+++..+++.++  ++|.++++|+++..|++.......
T Consensus       188 ~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~i~--~~t~~~~~P~~~~~l~~~~~~~~~  265 (503)
T 4fuq_A          188 VDYWRFTPDDVLIHALPIYHTHGLFVASNVTLFARGSMIFLPKFDPDKILDLMA--RATVLMGVPTFYTRLLQSPRLTKE  265 (503)
T ss_dssp             HHHTTCCTTCEEEECSCSSSHCCCCCCHHHHHHTTCEEEECSSCCHHHHHHHHT--TCCEEEECHHHHHHHHTCTTCSTT
T ss_pred             HHHhCCCCCCEEEEeCChHHHHHHHHHHHHHHHhCCEEEEcCCCCHHHHHHHHh--hcCEEEEHHHHHHHHHhCCCcccc
Confidence            345678899999999999999998666788999999999999999999999998  899999999999999998877777


Q ss_pred             CCCCceEEeecCCCCCHHHHHHHHHhCCCCceeeccccccccccccccccCCCCCCCCCCccccCCCcEEEEEeCCCCCC
Q 026609           85 DLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKP  164 (236)
Q Consensus        85 ~l~~lr~i~~~G~~~~~~~~~~~~~~~~~~~v~~~~YG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~  164 (236)
                      .++++|.++++|+++++++.+.|.+.++ ..+++ .||+||++..+....  ......+.+|+|+++++++++|++++++
T Consensus       266 ~~~~lr~~~~gg~~l~~~~~~~~~~~~~-~~~~~-~YG~TE~~~~~~~~~--~~~~~~~~~G~p~~~~~~~i~d~~~g~~  341 (503)
T 4fuq_A          266 TTGHMRLFISGSAPLLADTHREWSAKTG-HAVLE-RYGMTETNMNTSNPY--DGDRVPGAVGPALPGVSARVTDPETGKE  341 (503)
T ss_dssp             TTTTCCEEEECSSCCCHHHHHHHHHHHS-CCEEE-CCEETTTEECBCCCS--SSCCCTTEEEEBCTTCEEEEECTTTCCB
T ss_pred             chhhcEEEEECCCCCCHHHHHHHHHHhC-CCccc-eEcccccCcccccCC--CCCCcCCccccCCCCeEEEEEECCCCCC
Confidence            7899999999999999999999999987 78888 999999987755322  2245567899999999999999889999


Q ss_pred             CCCCCceEEEEecCccchhhcCCcccccccccCCCeEecCceEEEcCCCcEEEEcccCCceeeccEEeecCC
Q 026609          165 LPPNQLGEIWLRGPNMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSNW  236 (236)
Q Consensus       165 ~~~g~~Gel~v~~~~~~~~~~~~~~~~~~~~~~~~~~~TgD~~~~~~~g~~~~~GR~~d~i~~~G~~i~p~~  236 (236)
                      +++|+.|||+|+|+.++.||+++++.+...|..+|||+|||++++++||.+++.||+||+||++|++|+|.|
T Consensus       342 ~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~e  413 (503)
T 4fuq_A          342 LPRGDIGMIEVKGPNVFKGYWRMPEKTKSEFRDDGFFITGDLGKIDERGYVHILGRGKDLVITGGFNVYPKE  413 (503)
T ss_dssp             CCTTCCEEEEEESTTSCCCBTTCHHHHHHTBCTTSCEEEEEEEEECTTCEEEECCSSTTCEEETTEEECHHH
T ss_pred             CcCCCceEEEEECCchhhhhcCChhhhHhhhCCCCCeEcceeEEEcCCCcEEEEecCCCEEEECCEEECHHH
Confidence            999999999999999999999999999999988999999999999999999999999999999999999965

>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A

Probab=100.00  E-value=4.7e-43  Score=300.90  Aligned_cols=227  Identities=25%  Similarity=0.346  Sum_probs=200.3

Q ss_pred             eeccCCCCcEEEEecChhhHHhHHH-HHHHHhhcCcEEEEcCCCCHHHHHHHHHhcCceEEEeChHHHHHHHhcCCcCCC
Q 026609            6 QETAGELDYVFLCVLPLFHVFGLAV-ITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKF   84 (236)
Q Consensus         6 ~~~~~~~~d~~l~~~p~~~~~g~~~-~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~   84 (236)
                      ..++..++|++++.+|++|.+++.. .++.+++.|+++++.+.+++..+++.++++++|+++++|+++..|++.......
T Consensus       216 ~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~  295 (539)
T 1mdb_A          216 EVCWLDHSTVYLAALPMAHNYPLSSPGVLGVLYAGGRVVLSPSPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSRRD  295 (539)
T ss_dssp             HHHTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEEECSSSSHHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHCCC
T ss_pred             HhhCCCCCCEEEEeecccccchhhHHHHHHHHHhCCEEEECCCCCHHHHHHHHHHcCCeEEEccHHHHHHHHhCccccCC
Confidence            3467888999999999999999955 688999999999999999999999999999999999999999999887655666


Q ss_pred             CCCCceEEeecCCCCCHHHHHHHHHhCCCCceeeccccccccccccccccCCCCCCCCCCccccCCC-cEEEEEeCCCCC
Q 026609           85 DLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVGYGLTETSGIATMENSFAGSRNIGSAGALAPG-VEALIVSVDTQK  163 (236)
Q Consensus        85 ~l~~lr~i~~~G~~~~~~~~~~~~~~~~~~~v~~~~YG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~-~~~~~~~~~~~~  163 (236)
                      +++++|.+++||+++++++.++|.+.++ ..+++ .||+||++..+.. ...........+|+|+++ .+++++| ++++
T Consensus       296 ~l~~lr~~~~gG~~l~~~~~~~~~~~~~-~~~~~-~YG~TE~~~~~~~-~~~~~~~~~~~~G~p~~~~~~~~i~d-~~~~  371 (539)
T 1mdb_A          296 DLSSLQVLQVGGAKFSAEAARRVKAVFG-CTLQQ-VFGMAEGLVNYTR-LDDPEEIIVNTQGKPMSPYDESRVWD-DHDR  371 (539)
T ss_dssp             CCTTCCEEEEESSCCCHHHHTTHHHHTC-SEEEE-EEECTTSCEEECC-TTSCHHHHHHCCCEESSTTCEEEEEC-TTSC
T ss_pred             CccceeEEEEcCCCCCHHHHHHHHHHhC-CcEEE-EEcCCCCcccccC-CCCcHHhcCCCCCcccCCCceEEEEC-CCCC
Confidence            8899999999999999999999999986 88888 9999996543332 111111234578999976 4799999 5899


Q ss_pred             CCCCCCceEEEEecCccchhhcCCcccccccccCCCeEecCceEEEcCCCcEEEEcccCCceeeccEEeecCC
Q 026609          164 PLPPNQLGEIWLRGPNMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSNW  236 (236)
Q Consensus       164 ~~~~g~~Gel~v~~~~~~~~~~~~~~~~~~~~~~~~~~~TgD~~~~~~~g~~~~~GR~~d~i~~~G~~i~p~~  236 (236)
                      +++.|+.|||+|+|+.++.||+++++.+...|..+|||+|||++++++||++++.||+||+||++|++|+|.|
T Consensus       372 ~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~e  444 (539)
T 1mdb_A          372 DVKPGETGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVRLTRDGYIVVEGRAKDQINRGGEKVAAEE  444 (539)
T ss_dssp             BCCTTCCEEEEEECTTSCSSCTTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEEEGGGCEECSSCEECHHH
T ss_pred             CCcCCCcceEEeeCcccchhhcCChhhhhhhccCCCCeecCceEEECCCCcEEEeccccceEEECCEEECHHH
Confidence            9999999999999999999999999999999988999999999999999999999999999999999999965

>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*

Probab=100.00  E-value=4.2e-42  Score=300.83  Aligned_cols=229  Identities=21%  Similarity=0.286  Sum_probs=201.9

Q ss_pred             eeccCCCCcEEEEecChhhHHhHHHHHHHHhhcCcEEEEcCC----CCHHHHHHHHHhcCceEEEeChHHHHHHHhcCC-
Q 026609            6 QETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK----FDLEMFLRAIEKHRVTHIWVVPPLILALAKHGL-   80 (236)
Q Consensus         6 ~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~-   80 (236)
                      ..+++.++|++++.+|++|..|+...++.++..|+++++.+.    +++..+++.++++++|+++++|++++.|++... 
T Consensus       291 ~~~~~~~~d~~l~~~~~~~~~g~~~~~~~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~  370 (652)
T 1pg4_A          291 YVFDYHPGDIYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDK  370 (652)
T ss_dssp             HHTTCCTTCEEEECSCTTSHHHHHHTTHHHHHTTCEEEEECSCTTSSSTTHHHHHHHHHTCSEEEECHHHHHHHHTTGGG
T ss_pred             HhcCCCCCCEEEEccCCeeeechHHHHHHHHHcCceEEEECCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcCcc
Confidence            346788999999999999999997778899999999999874    589999999999999999999999999998754 


Q ss_pred             -cCCCCCCCceEEeecCCCCCHHHHHHHHHhCCC--CceeeccccccccccccccccCCCCCCCCCCccccCCCcEEEEE
Q 026609           81 -VKKFDLSSLKLVGSGAAPLGKELMEECAKNVPS--ATVIQVGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIV  157 (236)
Q Consensus        81 -~~~~~l~~lr~i~~~G~~~~~~~~~~~~~~~~~--~~v~~~~YG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~  157 (236)
                       ....+++++|.++++||++++++++++.+.++.  ..+++ .||+||++..++.........+.+.+|+|+++++++++
T Consensus       371 ~~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~g~~~~~i~~-~YG~TE~~~~~~~~~~~~~~~~~~s~G~p~~g~~v~i~  449 (652)
T 1pg4_A          371 AIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVD-TWWQTETGGFMITPLPGAIELKAGSATRPFFGVQPALV  449 (652)
T ss_dssp             GTTTCCCTTCCEEEEESSCCCHHHHHHHHHHTTTTCSCEEE-EBCCGGGSSCSBCCCTTTCCBCTTCCBSBCTTCCEEEE
T ss_pred             ccccCCcCceEEEEEecCCCCHHHHHHHHHHhCCCCCcEEc-cccCcccccceecCCCCCcCccCCccccCcCCCeEEEE
Confidence             244578999999999999999999999998862  67888 99999998766654332224456889999999999999


Q ss_pred             eCCCCCCCCCCCceEEEEec--CccchhhcCCccccccccc--CCCeEecCceEEEcCCCcEEEEcccCCceeeccEEee
Q 026609          158 SVDTQKPLPPNQLGEIWLRG--PNMMRGYYNNEQATKLTID--KKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVT  233 (236)
Q Consensus       158 ~~~~~~~~~~g~~Gel~v~~--~~~~~~~~~~~~~~~~~~~--~~~~~~TgD~~~~~~~g~~~~~GR~~d~i~~~G~~i~  233 (236)
                      | +++++++.|+.|||+|++  |+++.+||++++.+...+.  .+|||+|||++++++||+++|.||+||+||++|++|+
T Consensus       450 d-~~g~~v~~g~~GEl~i~g~~p~~~~gY~~~~e~~~~~~~~~~~g~y~TGDlg~~d~dG~l~i~GR~dd~Ik~~G~rI~  528 (652)
T 1pg4_A          450 D-NEGHPQEGATEGNLVITDSWPGQARTLFGDHERFEQTYFSTFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLG  528 (652)
T ss_dssp             C-TTCCBCCSSEEEEEEECSCCTTCCCEETTCHHHHHHHHHSSSTTSEEEEEEEEECTTSCEEEEEESSSEEEETTEEEE
T ss_pred             C-CCCCCcCCCceEEEEEccCCCchhhhhcCCHHHHHhhhhhcCCCEEECCcEEEEcCCCcEEEEecCCCEEEECCEEEC
Confidence            9 579999999999999999  7899999999988876653  3789999999999999999999999999999999999


Q ss_pred             cCC
Q 026609          234 SNW  236 (236)
Q Consensus       234 p~~  236 (236)
                      |.|
T Consensus       529 ~~e  531 (652)
T 1pg4_A          529 TAE  531 (652)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            865

>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}

Probab=100.00  E-value=1.1e-41  Score=310.04  Aligned_cols=229  Identities=45%  Similarity=0.741  Sum_probs=197.9

Q ss_pred             eccCCCCcEEEEecChhhHHhHHHHHHHHhhcCcEEEEcCCCCHHHHHHHHHhcCceEEEeChHHHHHHHhcCCcCCCCC
Q 026609            7 ETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDL   86 (236)
Q Consensus         7 ~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l   86 (236)
                      .++..++|++++.+|++|.+++...++.++..|+++++.+++++..+++.++++++|.+.++|+++..|++.......++
T Consensus       264 ~~~~~~~d~~l~~~p~~h~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l  343 (979)
T 3tsy_A          264 NLYFHSDDVILCVLPMFHIYALNSIMLCGLRVGAAILIMPKFEINLLLELIQRCKVTVAPMVPPIVLAIAKSSETEKYDL  343 (979)
T ss_dssp             SSCCCSSCEEEECSCSSSHHHHHHTHHHHHHHTCEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHCGGGGTSCC
T ss_pred             cccCCCCCEEEEECchHHHHHHHHHHHHHHhcCcEEEEeCCCCHHHHHHHHHHhCCeEEEcHHHHHHHHHhCccccCCCc
Confidence            45678899999999999999997778899999999999999999999999999999999999999999999887777789


Q ss_pred             CCceEEeecCCCCCHHHHHHHHHhCCCCceeecccccccccccccccc---CCCCCCCCCCccccCCCcEEEEEeCCCCC
Q 026609           87 SSLKLVGSGAAPLGKELMEECAKNVPSATVIQVGYGLTETSGIATMEN---SFAGSRNIGSAGALAPGVEALIVSVDTQK  163 (236)
Q Consensus        87 ~~lr~i~~~G~~~~~~~~~~~~~~~~~~~v~~~~YG~tE~g~~~~~~~---~~~~~~~~~~~g~p~~~~~~~~~~~~~~~  163 (236)
                      +++|.++++|+++++++.++|.+.+++..+++ .||+||++.+++...   ........+.+|+|+++++++++|+++++
T Consensus       344 ~~lr~~~~gg~~l~~~~~~~~~~~~~~~~l~~-~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~~~  422 (979)
T 3tsy_A          344 SSIRVVKSGAAPLGKELEDAVNAKFPNAKLGQ-GYGMTEAGPVLAMSLGFAKEPFPVKSGACGTVVRNAEMKIVDPDTGD  422 (979)
T ss_dssp             TTCCEEEESSCCCCSSHHHHHHHHCTTCEEEE-CEECGGGCSEEEECGGGSSSCCCCCTTCCCEECSSCEEEEECTTSCC
T ss_pred             cceEEEEEcCCCCCHHHHHHHHHHCCCCeEEe-eechhhhhHHHHhCCCCCCCccccCCCCcCcccCCcEEEEEeCCCCC
Confidence            99999999999999999999999997788999 999999987665432   12223456789999999999999988899


Q ss_pred             CCCCCCceEEEEecCccchhhcCCcccccccccCCCeEecCceEEEcCCCcEEEEcccCCceeeccEEeecCC
Q 026609          164 PLPPNQLGEIWLRGPNMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSNW  236 (236)
Q Consensus       164 ~~~~g~~Gel~v~~~~~~~~~~~~~~~~~~~~~~~~~~~TgD~~~~~~~g~~~~~GR~~d~i~~~G~~i~p~~  236 (236)
                      +++.|+.|||+|+|+.++.||+++++.+...|..+|||+|||++++++||.+++.||+||+||++|++|+|.|
T Consensus       423 ~~~~g~~GEl~i~g~~v~~GY~~~p~~t~~~f~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~~~e  495 (979)
T 3tsy_A          423 SLSRNQPGEICIRGHQIMKGYLNNPAATAETIDKDGWLHTGDIGLIDDDDELFIVDRLKELIKYKGFQVAPAE  495 (979)
T ss_dssp             BCCTTCCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEEESCC-------------
T ss_pred             CCCCCCccEEEEECCCccccccCChhhhhhhccCCCcEEcCCEEEEcCCceEEEecCCCCEEEECCEEECHHH
Confidence            9999999999999999999999999999999988999999999999999999999999999999999999986

>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}

Probab=100.00  E-value=2e-41  Score=292.97  Aligned_cols=223  Identities=23%  Similarity=0.304  Sum_probs=199.0

Q ss_pred             eccCCCCcEEEEecChhhHHhHHHHHHHHhhcCcEEEEc--CCCCHHHHHHHHHhcCceEEEeChHHHHHHHhcCCcCCC
Q 026609            7 ETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILM--AKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKF   84 (236)
Q Consensus         7 ~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~--~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~   84 (236)
                      ..+..++|++++.+|++|..++...++.++..|+++++.  +.+++..+++.++++++|.++++|++++.|++.. ....
T Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~-~~~~  338 (580)
T 3etc_A          260 WQNVEDDGLHYTVADSGWGKCVWGKLYGQWIAGCAVFVYDYDRFEAKNMLEKASKYGVTTFCAPPTIYRFLIKED-LSHY  338 (580)
T ss_dssp             TSCCCTTCEEEECCCTTSTHHHHHTTHHHHHTTCEEEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTSC-C---
T ss_pred             hhCCCCCceEEEeCChHHHHHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHHHHHCCeEEEccHHHHHHHHhcc-cccC
Confidence            457788999999999999998866688999999999987  4689999999999999999999999999998863 3556


Q ss_pred             CCCCceEEeecCCCCCHHHHHHHHHhCCCCceeeccccccccccccccccCCCCCCCCCCccccCCCcEEEEEeCCCCCC
Q 026609           85 DLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKP  164 (236)
Q Consensus        85 ~l~~lr~i~~~G~~~~~~~~~~~~~~~~~~~v~~~~YG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~  164 (236)
                      +++++|.++++||++++++.++|.+.++ ..+++ .||+||++..++.....  ..+.+++|+|+++++++++| +++++
T Consensus       339 ~l~~lr~i~~gGe~l~~~~~~~~~~~~g-~~i~~-~YG~TE~~~~~~~~~~~--~~~~~~~G~p~~~~~v~ivd-~~g~~  413 (580)
T 3etc_A          339 NFSTLKYAVVAGEPLNPEVFNRFLEFTG-IKLME-GFGQTETVVTIATFPWM--EPKPGSIGKPTPGYKIELMD-RDGRL  413 (580)
T ss_dssp             CCTTCCEEEECSSCCCHHHHHHHHHHHS-CCCEE-EECCTTSSCCEECCTTS--CCCTTCCBEECTTCEEEEEC-TTSCB
T ss_pred             CCccceEEEEccCCCCHHHHHHHHHHhC-CeEec-ccccccccceeecCCCC--CCCCCccccCCCCCEEEEEC-CCCCC
Confidence            7899999999999999999999999886 88998 99999998776654332  45678899999999999999 57999


Q ss_pred             CCCCCceEEEEec-----CccchhhcCCcccccccccCCCeEecCceEEEcCCCcEEEEcccCCceeeccEEeecCC
Q 026609          165 LPPNQLGEIWLRG-----PNMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSNW  236 (236)
Q Consensus       165 ~~~g~~Gel~v~~-----~~~~~~~~~~~~~~~~~~~~~~~~~TgD~~~~~~~g~~~~~GR~~d~i~~~G~~i~p~~  236 (236)
                      +++|+.|||+|++     +.++.+|+++++.+...| .+|||+|||++++++||++++.||+||+||++|++|+|.|
T Consensus       414 ~~~g~~GEl~v~~~~g~~~~~~~gY~~~p~~t~~~f-~~gwy~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~I~p~e  489 (580)
T 3etc_A          414 CEVGEEGEIVINTMEGKPVGLFVHYGKDPERTEETW-HDGYYHTGDMAWMDEDGYLWFVGRADDIIKTSGYKVGPFE  489 (580)
T ss_dssp             CCTTCCEEEEEECTTCCCTTCCCEETTCHHHHHHHE-ETTEEEEEEEEEECTTSCEEEEEESSSCEEETTEEECHHH
T ss_pred             CCCCCceEEEEecCCCCCCeeeccccCCHhHHHhhc-CCCEEecCcEEEECCCCcEEEEecCCCEEEECCEEECHHH
Confidence            9999999999997     789999999999999988 6899999999999999999999999999999999999965

>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*

Probab=100.00  E-value=1.4e-42  Score=298.34  Aligned_cols=228  Identities=24%  Similarity=0.357  Sum_probs=190.3

Q ss_pred             eeeccCCCCcEEEEecChhhHHhHHH-HHHHHhhcCcEEEEcCCCCHHHHHHHHHhcCceEEEeChHHHHHHHhcCCcCC
Q 026609            5 DQETAGELDYVFLCVLPLFHVFGLAV-ITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKK   83 (236)
Q Consensus         5 ~~~~~~~~~d~~l~~~p~~~~~g~~~-~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~   83 (236)
                      .+.++..++|++++.+|++|.+++.. .++.++..|+++++.+.+++..+++.++++++|.++++|+++..|++......
T Consensus       224 ~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~  303 (544)
T 3o83_A          224 AEICGLNSNTRLLCALPAPHNFMLSSPGALGVLHAGGCVVMAPNPEPLNCFSIIQRHQVNMASLVPSAVIMWLEKAAQYK  303 (544)
T ss_dssp             HHHTTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHHHTTTH
T ss_pred             HHHhCCCCCCeEEEecCcceEeecchHHHHHHHHcCCEEEECCCCCHHHHHHHHHHHCCCEEEechHHHHHHHhchhhcc
Confidence            34567889999999999999999854 58899999999999999999999999999999999999999999998876666


Q ss_pred             CCCCCceEEeecCCCCCHHHHHHHHHhCCCCceeeccccccccccccccccCCCCCCCCCCccccC-CCcEEEEEeCCCC
Q 026609           84 FDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVGYGLTETSGIATMENSFAGSRNIGSAGALA-PGVEALIVSVDTQ  162 (236)
Q Consensus        84 ~~l~~lr~i~~~G~~~~~~~~~~~~~~~~~~~v~~~~YG~tE~g~~~~~~~~~~~~~~~~~~g~p~-~~~~~~~~~~~~~  162 (236)
                      .+++++|.++++|+++++++.+++.+.++ ..+++ .||+||++..+...... .......+|+|+ ++.+++++| +++
T Consensus       304 ~~~~~lr~i~~gG~~l~~~~~~~~~~~~~-~~~~~-~YG~TE~~~~~~~~~~~-~~~~~~~~G~p~~~~~~~~i~d-~~~  379 (544)
T 3o83_A          304 DQIQSLKLLQVGGASFPESLARQVPEVLN-CKLQQ-VFGMAEGLVNYTRLDDS-DEQIFTTQGRPISSDDEIKIVD-EQY  379 (544)
T ss_dssp             HHHTTCCEEEEESSCCCHHHHTHHHHHHC-SEEEE-EEECTTSCEEECCTTSC-HHHHHHCCCEESCTTCEEEEEC-TTS
T ss_pred             ccCCcceEEEEcCCCCCHHHHHHHHHHhC-CcEEe-eeccccccceeecCCCc-hhhccCCCceecCCCcEEEEEC-CCC
Confidence            67889999999999999999999999986 88888 99999987654432211 122345789996 899999999 689


Q ss_pred             CCCCCCCceEEEEecCccchhhcCCcccccccccCCCeEecCceEEEcCCCcEEEEcccCCceeeccEEeecCC
Q 026609          163 KPLPPNQLGEIWLRGPNMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSNW  236 (236)
Q Consensus       163 ~~~~~g~~Gel~v~~~~~~~~~~~~~~~~~~~~~~~~~~~TgD~~~~~~~g~~~~~GR~~d~i~~~G~~i~p~~  236 (236)
                      +++++|+.|||+|+|+.++.||+++++.+...|..+|||+|||++++++||.+++.||+||+||++|++|+|.|
T Consensus       380 ~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~e  453 (544)
T 3o83_A          380 REVPEGEIGMLATRGPYTFCGYYQSPEHNSQVFDEDNYYYSGDLVQRTPDGNLRVVGRIKDQINRGGEKIASEE  453 (544)
T ss_dssp             CBCCTTCCEEEEEECTTSCSCCTTCHHHHHHHBCTTCCEEEEEEEEECTTSCEEEEEEEC--------------
T ss_pred             CCCCCCCeeEEEEecCCcchhhcCChhhhhhhCCCCCCeEcCCEEEEcCCCCEEEEeecCCEEEeCCEEECHHH
Confidence            99999999999999999999999999999999988999999999999999999999999999999999999986

>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}

Probab=100.00  E-value=1e-41  Score=293.29  Aligned_cols=229  Identities=28%  Similarity=0.464  Sum_probs=191.7

Q ss_pred             eeeccCCCCcEEEEecChhhHHhHHHHHHHHhhcCcEEEEcCCCCHHHHHHHHHhcCceEEEeChHHHHHHHhcCCcCC-
Q 026609            5 DQETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKK-   83 (236)
Q Consensus         5 ~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~-   83 (236)
                      ...++..++|++++.+|++|.+++. .++.++..|+++++.+.+++..+++.++++++|.++++|+++..|++...... 
T Consensus       213 ~~~~~~~~~d~~~~~~p~~~~~~~~-~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~  291 (549)
T 3g7s_A          213 AVATGLSHMDTIVGCMPMFHSAEFG-LVNLMVTVGNEYVVMGMFNQEMLAENIEKYKGTFSWAVPPALNVLVNTLESSNK  291 (549)
T ss_dssp             HHHHCCCTTCEEECCSCTTSHHHHH-HHTTHHHHCCEEEEESSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHSCC
T ss_pred             HHHcCCCCCCEEEEeCcHHHHHHHH-HHHHHHhcCceEEEcCCCCHHHHHHHHHHhCCeEEEeCCHHHHHHHhhhhhhcc
Confidence            3456788999999999999999994 48889999999999999999999999999999999999999999988754433 


Q ss_pred             -CCCCCceEEeecCCCCCHHHHHHHHHh----CCC--CceeeccccccccccccccccCCCCCCCCCCccccCCCcEEEE
Q 026609           84 -FDLSSLKLVGSGAAPLGKELMEECAKN----VPS--ATVIQVGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALI  156 (236)
Q Consensus        84 -~~l~~lr~i~~~G~~~~~~~~~~~~~~----~~~--~~v~~~~YG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~~  156 (236)
                       .+++++|.++++|+++++++.+++.+.    ++.  ..+.+ .||+||++.+++...... ......+|+|++++++++
T Consensus       292 ~~~~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~YG~TE~~~~~~~~~~~~-~~~~~~~G~p~~~~~~~i  369 (549)
T 3g7s_A          292 TYDWSYLKVFATGAWPVAPALVEKLLKLAAEKCNNPRLRHNQ-IWGMTEACPMVTTNPPLR-LDKSTTQGVPMSDIELKV  369 (549)
T ss_dssp             CCCCTTCCEEEEESSCCCHHHHHHHHHHHHHHSSCTTCEEEE-EEECGGGSSEEEECCGGG-GGGTTSCCEECTTCEEEE
T ss_pred             cCCccceeEEEeCCccCCHHHHHHHHHHHHhhcCCccccccc-eEeccccchhhhcCCccc-cCcCCCccccCCCCEEEE
Confidence             578899999999999999999999987    542  67888 999999998776543322 245678999999999999


Q ss_pred             EeCCCCCCCCCCCceEEEEecCccchhhcCCccccccccc--CCC--eEecCceEEEcCCCcEEEEcccCCceeeccEEe
Q 026609          157 VSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQATKLTID--KKG--WVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV  232 (236)
Q Consensus       157 ~~~~~~~~~~~g~~Gel~v~~~~~~~~~~~~~~~~~~~~~--~~~--~~~TgD~~~~~~~g~~~~~GR~~d~i~~~G~~i  232 (236)
                      +|++++++++.|+.|||+|+|+.++.||+++++.+...|.  .+|  ||+|||++++++||.+++.||+||+||++|++|
T Consensus       370 ~d~~~g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~g~~~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v  449 (549)
T 3g7s_A          370 ISLEDGRELGVGESGEIVIRGPNIFKGYWKREKENQECWWYDEKGRKFFRTGDVGFIDEEGFLHFQDRVKEVIKYKGYTI  449 (549)
T ss_dssp             ECSSSCCEECTTCCEEEEEESTTSCSEETTCTTGGGTSEEECTTCCEEEEEEEEEEECTTSCEEEEEEC-----------
T ss_pred             EeCCCCcCCCCCCceEEEEECcchhhhhCCChhhhhhhhhccCCCCceEccCcEEEEcCCceEEEeccccceEEECCEEE
Confidence            9988999999999999999999999999999999988873  566  999999999999999999999999999999999


Q ss_pred             ecCC
Q 026609          233 TSNW  236 (236)
Q Consensus       233 ~p~~  236 (236)
                      +|.|
T Consensus       450 ~p~e  453 (549)
T 3g7s_A          450 APFE  453 (549)
T ss_dssp             -CHH
T ss_pred             CHHH
Confidence            9975

>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*

Probab=100.00  E-value=3.8e-41  Score=290.69  Aligned_cols=224  Identities=19%  Similarity=0.301  Sum_probs=200.6

Q ss_pred             eeccCCCCcEEEEecChhhHHhHHHHHHHHhhcCcEEEEcC--CCCHHHHHHHHHhcCceEEEeChHHHHHHHhcCCcCC
Q 026609            6 QETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA--KFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKK   83 (236)
Q Consensus         6 ~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~--~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~   83 (236)
                      ..+++.++|++++.+|++|..++...++.++..|+++++.+  .+++..+++.++++++|.++++|++++.|++.. ...
T Consensus       240 ~~~~~~~~d~~~~~~p~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~-~~~  318 (570)
T 3c5e_A          240 GWTGLQASDIMWTISDTGWILNILCSLMEPWALGACTFVHLLPKFDPLVILKTLSSYPIKSMMGAPIVYRMLLQQD-LSS  318 (570)
T ss_dssp             TTTSCCTTCEEEECCCTTSHHHHHHTTHHHHHHTCEEEEECCSSCCHHHHHHHHHHSCCCEEEECHHHHHHHHTSC-TTT
T ss_pred             hhcCCCCCceEEEcCchHHHHHHHHHHHHHHHhCceEEEecCCCCCHHHHHHHHHHhCCeEEeccHHHHHHHHhcc-ccc
Confidence            34667889999999999999999667889999999999986  689999999999999999999999999998863 344


Q ss_pred             CCCCCceEEeecCCCCCHHHHHHHHHhCCCCceeeccccccccccccccccCCCCCCCCCCccccCCCcEEEEEeCCCCC
Q 026609           84 FDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQK  163 (236)
Q Consensus        84 ~~l~~lr~i~~~G~~~~~~~~~~~~~~~~~~~v~~~~YG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~  163 (236)
                      .+++++|.++++|+++++++.+.|.+.++ ..+++ .||+||++.++......  ....+.+|+|+++++++++| ++++
T Consensus       319 ~~~~~lr~i~~gGe~l~~~~~~~~~~~~g-~~i~~-~YG~TE~~~~~~~~~~~--~~~~~~vG~p~~~~~v~i~d-~~g~  393 (570)
T 3c5e_A          319 YKFPHLQNCVTVGESLLPETLENWRAQTG-LDIRE-SYGQTETGLTCMVSKTM--KIKPGYMGTAASCYDVQIID-DKGN  393 (570)
T ss_dssp             CCCTTCCEEEEESSCCCHHHHHHHHHHHS-CCCEE-EEEETTTEEEEECCTTS--CCCTTCCCEECTTCCEEEEC-TTSC
T ss_pred             cccccceEEEEcCCcCCHHHHHHHHHHhC-Cchhh-ccchhhcccceecCccc--ccCCCcccccCCCceEEEEC-CCCC
Confidence            56889999999999999999999999886 78888 99999998766543222  34567899999999999999 5799


Q ss_pred             CCCCCCceEEEEe-----cCccchhhcCCcccccccccCCCeEecCceEEEcCCCcEEEEcccCCceeeccEEeecCC
Q 026609          164 PLPPNQLGEIWLR-----GPNMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSNW  236 (236)
Q Consensus       164 ~~~~g~~Gel~v~-----~~~~~~~~~~~~~~~~~~~~~~~~~~TgD~~~~~~~g~~~~~GR~~d~i~~~G~~i~p~~  236 (236)
                      +++.|+.|||+|+     |+.++.||+++++.+...| .++||+|||++++++||++++.||+||+||++|++|+|.|
T Consensus       394 ~~~~G~~GEl~v~~~~~~g~~v~~GY~~~~~~t~~~f-~~~~~~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~V~p~e  470 (570)
T 3c5e_A          394 VLPPGTEGDIGIRVKPIRPIGIFSGYVDNPDKTAANI-RGDFWLLGDRGIKDEDGYFQFMGRADDIINSSGYRIGPSE  470 (570)
T ss_dssp             BCCTTCCEEEEEECSSBCCTTCCCEETTCHHHHHHTE-ETTEEEEEEEEEECTTSCEEEEEEGGGCEEETTEEECHHH
T ss_pred             CCCCCCCCeeEEeccCCCCchhhccccCChhHhhhhh-cCCccccceeEEEcCCceEEEEecCCCEEEECCEEECHHH
Confidence            9999999999999     9999999999999998888 5899999999999999999999999999999999999965

>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*

Probab=100.00  E-value=1.7e-41  Score=291.41  Aligned_cols=226  Identities=29%  Similarity=0.409  Sum_probs=197.4

Q ss_pred             eeccCCCCcEEEEecChhhHHhHHHHHHHHhhcCcEEEEcCC-CCHHHHHHHHHhcCceEEEeChHHHHHHHhcCCcCCC
Q 026609            6 QETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK-FDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKF   84 (236)
Q Consensus         6 ~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~   84 (236)
                      ..+++.++|++++.+|++|.+++ ..++.+++.|+++++.+. +++..+++.++++++|+++++|+++..|++.......
T Consensus       212 ~~~~~~~~d~~l~~~p~~h~~~~-~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~  290 (541)
T 1v25_A          212 DGTALSEKDVVLPVVPMFHVNAW-CLPYAATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLESTGH  290 (541)
T ss_dssp             TTTCCCTTCEEEECSCTTSHHHH-THHHHHHHHTCEEEECTTCCSHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHHTC
T ss_pred             ccccCCCCCEEEEeccchhhhHH-HHHHHHHhcCceEEeeCCCCCHHHHHHHHHhcCeeEEecchHHHHHHHhhhhccCC
Confidence            34567889999999999999999 567788999999999874 7999999999999999999999999999887655556


Q ss_pred             CCCCceEEeecCCCCCHHHHHHHHHhCCCCceeeccccccccccccccccCCCC---------CCCCCCccccCCCcEEE
Q 026609           85 DLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVGYGLTETSGIATMENSFAG---------SRNIGSAGALAPGVEAL  155 (236)
Q Consensus        85 ~l~~lr~i~~~G~~~~~~~~~~~~~~~~~~~v~~~~YG~tE~g~~~~~~~~~~~---------~~~~~~~g~p~~~~~~~  155 (236)
                      +++++|.++++|+++++++.++| +.++ ..+++ .||+||++.+++.......         ......+|+|+++++++
T Consensus       291 ~l~~lr~i~~gG~~l~~~~~~~~-~~~g-~~~~~-~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~  367 (541)
T 1v25_A          291 RLKTLRRLVVGGSAAPRSLIARF-ERMG-VEVRQ-GYGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKTGLPIPLVRLR  367 (541)
T ss_dssp             CCSSCCEEEECSSCCCHHHHHHH-HHTT-CEEEE-EEECGGGSSEEEECCCCGGGTTSCHHHHHHHHTSCBEECTTCEEE
T ss_pred             cchhccEEEECCCCCCHHHHHHH-HHhC-Cceee-cccccccccceecccccccccccCccccccccCCCCCcCCCcEEE
Confidence            78999999999999999999999 6665 88888 9999999877665432110         01246789999999999


Q ss_pred             EEeCCCCCCCCC--CCceEEEEecCccchhhcCCcccccccccCCCeEecCceEEEcCCCcEEEEcccCCceeeccEEee
Q 026609          156 IVSVDTQKPLPP--NQLGEIWLRGPNMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVT  233 (236)
Q Consensus       156 ~~~~~~~~~~~~--g~~Gel~v~~~~~~~~~~~~~~~~~~~~~~~~~~~TgD~~~~~~~g~~~~~GR~~d~i~~~G~~i~  233 (236)
                      ++| +++++++.  ++.|||+|+|+.++.||+++++.+...|..+|||+|||+++++++|++++.||+||+||++|++|+
T Consensus       368 i~d-~~g~~~~~~~~~~GEl~v~g~~v~~GY~~~p~~t~~~f~~~g~~~TGDlg~~d~dG~l~~~GR~~d~ik~~G~~v~  446 (541)
T 1v25_A          368 VAD-EEGRPVPKDGKALGEVQLKGPWITGGYYGNEEATRSALTPDGFFRTGDIAVWDEEGYVEIKDRLKDLIKSGGEWIS  446 (541)
T ss_dssp             EEC-TTSCBCCSSSCCCEEEEEESTTSBSSCBTCHHHHHTTBCTTSCEEEEEEEEECTTCCEEEEEESSCEEEETTEEEE
T ss_pred             EEC-CCCCCCCCCCCcceEEEEeCcchhccccCChhhhhhhccCCCCeEcCCEEEEcCCceEEEeecccceeeeCCEEEC
Confidence            999 57888884  368999999999999999999999999977999999999999999999999999999999999999


Q ss_pred             cCC
Q 026609          234 SNW  236 (236)
Q Consensus       234 p~~  236 (236)
                      |.|
T Consensus       447 p~e  449 (541)
T 1v25_A          447 SVD  449 (541)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            965

>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A

Probab=100.00  E-value=1.6e-41  Score=290.06  Aligned_cols=225  Identities=27%  Similarity=0.417  Sum_probs=201.2

Q ss_pred             eeeccCCCCcEEEEecChhhHHhHHHHHHHHhhcCcEEEEcCCCCHHHHHHHHHhcCceEEEeChHHHHHHHhcCCcCCC
Q 026609            5 DQETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKF   84 (236)
Q Consensus         5 ~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~   84 (236)
                      ...++..++|++++.+|++|.+++...++.++ .|+++++.+.+++..+++.++++++|.+.++|++++.|.+..+....
T Consensus       203 ~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~~~-~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~  281 (517)
T 3r44_A          203 ASTIDVRYRDRLLLPLPMFHVAALTTVIFSAM-RGVTLISMPQFDATKVWSLIVEERVCIGGAVPAILNFMRQVPEFAEL  281 (517)
T ss_dssp             HHHSCCCTTCEEEECSCTTSHHHHHHHHHHHH-HTCEEEECSSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHSHHHHHC
T ss_pred             HHhcCCCCCCEEEEeCchHHHHHHHHHHHHHh-cCeEEEEeCCCCHHHHHHHHHHhCCeEEEeHHHHHHHHHhCcccccC
Confidence            34567889999999999999999954455555 99999999999999999999999999999999999999987766666


Q ss_pred             CCCCceEEeecCCCCCHHHHHHHHHhCCCCceeeccccccccccccccccCCCCCCCCCCccccCCCcEEEEEeCCCCCC
Q 026609           85 DLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKP  164 (236)
Q Consensus        85 ~l~~lr~i~~~G~~~~~~~~~~~~~~~~~~~v~~~~YG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~  164 (236)
                      +++++|.+++||+++++++.+.|.+.  +..+++ .||+||++..++...........+.+|+|.++++++++| +++.+
T Consensus       282 ~~~~lr~i~~gGe~l~~~~~~~~~~~--~~~~~~-~YG~TE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d-~~~~~  357 (517)
T 3r44_A          282 DAPDFRYFITGGAPMPEALIKIYAAK--NIEVVQ-GYALTESCGGGTLLLSEDALRKAGSAGRATMFTDVAVRG-DDGVI  357 (517)
T ss_dssp             CCTTCCEEEECSSCCCHHHHHHHHHT--TCEEEE-EEECGGGTTCEEEECGGGTTTTTTCCBEECTTEEEEEEC-TTSCE
T ss_pred             CCCcccEEEECCCCCCHHHHHHHHhc--CCcEEE-eecccccccceeecCCccccccCCCCCcCCCCeEEEEEC-CCCCC
Confidence            78999999999999999999999987  488999 999999988766544433345678899999999999999 57888


Q ss_pred             CCCCCceEEEEecCccchhhcCCcccccccccCCCeEecCceEEEcCCCcEEEEcccCCceeeccEEeecCC
Q 026609          165 LPPNQLGEIWLRGPNMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSNW  236 (236)
Q Consensus       165 ~~~g~~Gel~v~~~~~~~~~~~~~~~~~~~~~~~~~~~TgD~~~~~~~g~~~~~GR~~d~i~~~G~~i~p~~  236 (236)
                      ++.| .|||+|+|+.++.||+++++.+...| .+|||+|||++++++||.+++.||+||+||++|++|+|.|
T Consensus       358 ~~~g-~GEl~v~g~~v~~GY~~~p~~t~~~f-~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~e  427 (517)
T 3r44_A          358 REHG-EGEVVIKSDILLKEYWNRPEATRDAF-DNGWFRTGDIGEIDDEGYLYIKDRLKDMIISGGENVYPAE  427 (517)
T ss_dssp             ESSE-EEEEEEEETTSCSEETTCHHHHHHTE-ETTEEEEEEEEEECTTSCEEEEECGGGCEEETTEEECHHH
T ss_pred             CCCC-CeEEEEeCcchhhhhCCChhhhHhhh-cCCCEecceeEEEcCCeeEEEecCCcCEEEECCEEECHHH
Confidence            8999 89999999999999999999999988 7899999999999999999999999999999999999965

>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*

Probab=100.00  E-value=2.6e-41  Score=288.51  Aligned_cols=227  Identities=20%  Similarity=0.252  Sum_probs=203.1

Q ss_pred             eeccCCCCcEEEEecChhhHHhHHHHHHHHhhcCcEEEEcCC---CCHHHHHHHHHhcCceEEEeChHHHHHHHhcCCcC
Q 026609            6 QETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK---FDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVK   82 (236)
Q Consensus         6 ~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~---~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~   82 (236)
                      ..++..++|++++.+|++|..++ ..++.+++.|+++++.+.   +++..+++.++++++|.+.++|+++..++......
T Consensus       178 ~~~~~~~~d~~l~~~p~~~~~~~-~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~  256 (512)
T 3fce_A          178 EDFNLQTGQVFLNQAPFSFDLSV-MDIYPSLVTGGTLWAIDKDMIARPKDLFASLEQSDIQVWTSTPSFAEMCLMEASFS  256 (512)
T ss_dssp             HHTTCCSSCEEEECSCTTSGGGH-HHHHHHHHTTCEEEECCHHHHHSHHHHHHHHHHHCCCEEEECHHHHHHHTTSTTCS
T ss_pred             HhcCCCCCCEEEEeCCccHhHHH-HHHHHHHhCCCEEEECCHHHhhCHHHHHHHHHHcCCcEEEecHHHHHHHHhhcccc
Confidence            45678899999999999999998 678999999999999885   68999999999999999999999999998887767


Q ss_pred             CCCCCCceEEeecCCCCCHHHHHHHHHhCCCCceeeccccccccccccccccCCC---CCCCCCCccccCCCcEEEEEeC
Q 026609           83 KFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVGYGLTETSGIATMENSFA---GSRNIGSAGALAPGVEALIVSV  159 (236)
Q Consensus        83 ~~~l~~lr~i~~~G~~~~~~~~~~~~~~~~~~~v~~~~YG~tE~g~~~~~~~~~~---~~~~~~~~g~p~~~~~~~~~~~  159 (236)
                      ...++++|.++++|+++++++.++|.+.|++..+++ .||+||++..++......   .......+|+|.++++++++| 
T Consensus       257 ~~~~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~i~~-~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d-  334 (512)
T 3fce_A          257 ESMLPNMKTFLFCGEVLPNEVARKLIERFPKATIMN-TYGPTEATVAVTGIHVTEEVLDQYKSLPVGYCKSDCRLLIMK-  334 (512)
T ss_dssp             TTTSTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEE-EECCGGGSSCSEEEECCHHHHHHCSSCCCEEECTTCEEEEEC-
T ss_pred             chhCccccEEEEecCcCCHHHHHHHHHHCCCCEEEe-CcccChhhhheeeEEeccccccccCCCccccccCCcEEEEEC-
Confidence            778899999999999999999999999997788999 999999988766533211   123456789999999999999 


Q ss_pred             CCCCCCCCCCceEEEEecCccchhhcCCcccccccc---cCCCeEecCceEEEcCCCcEEEEcccCCceeeccEEeecCC
Q 026609          160 DTQKPLPPNQLGEIWLRGPNMMRGYYNNEQATKLTI---DKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSNW  236 (236)
Q Consensus       160 ~~~~~~~~g~~Gel~v~~~~~~~~~~~~~~~~~~~~---~~~~~~~TgD~~~~~~~g~~~~~GR~~d~i~~~G~~i~p~~  236 (236)
                      ++++++++|+.|||+|+|+.++.||+++++.+...|   +.++||+|||++++ +||++++.||+||+||++|++|+|.|
T Consensus       335 ~~g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~TGDlg~~-~dG~l~i~GR~~d~ik~~G~~v~p~e  413 (512)
T 3fce_A          335 EDGTIAPDGEKGEIVIVGPSVSVGYLGSPELTEKAFTMIDGERAYKTGDAGYV-ENGLLFYNGRLDFQIKLHGYRMELEE  413 (512)
T ss_dssp             SSSCBCCTTSCEEEEEESTTSCSCBTTCHHHHHHHEEEETTEEEEEEEEEEEE-ETTEEEEEEEGGGCEEETTEEECHHH
T ss_pred             CCCCCCCCCCeEEEEEeccccChhhcCCchhhhhccccCCCCEEEeCCceEEe-cCCEEEEecccCCEEEECCEEECHHH
Confidence            689999999999999999999999999999998877   34679999999999 89999999999999999999999965

>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*

Probab=100.00  E-value=7.7e-41  Score=285.50  Aligned_cols=228  Identities=20%  Similarity=0.275  Sum_probs=201.6

Q ss_pred             eeeccCCCCcEEEEecChhhHHhHHHHHHHHhhcCcEEEEcCC---CCHHHHHHHHHhcCceEEEeChHHHHHHHhcCCc
Q 026609            5 DQETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK---FDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLV   81 (236)
Q Consensus         5 ~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~---~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~   81 (236)
                      ...++..++|++++.+|++|..++ ..++.++..|+++++.+.   +++..+++.++++++|.+.++|+++..++.....
T Consensus       176 ~~~~~~~~~d~~l~~~p~~~~~~~-~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~  254 (511)
T 3e7w_A          176 CADFPVSGGKIFLNQAPFSFDLSV-MDLYPCLQSGGTLHCVTKDAVNKPKVLFEELKKSGLNVWTSTPSFVQMCLMDPGF  254 (511)
T ss_dssp             HHHSTTTTTCEEEECSCTTSTHHH-HHHHHHHHTTCEEEECCHHHHHSHHHHHHHHHHHCCSEEEECHHHHHHHHTSTTC
T ss_pred             HHhcCCCccceEEEeCCccHHHHH-HHHHHHHhcCCEEEEcChhhhcCHHHHHHHHHHcCCcEEEecHHHHHHHHhcccc
Confidence            345678889999999999999998 678899999999999875   6899999999999999999999999999988776


Q ss_pred             CCCCCCCceEEeecCCCCCHHHHHHHHHhCCCCceeeccccccccccccccccCCC---CCCCCCCccccCCCcEEEEEe
Q 026609           82 KKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVGYGLTETSGIATMENSFA---GSRNIGSAGALAPGVEALIVS  158 (236)
Q Consensus        82 ~~~~l~~lr~i~~~G~~~~~~~~~~~~~~~~~~~v~~~~YG~tE~g~~~~~~~~~~---~~~~~~~~g~p~~~~~~~~~~  158 (236)
                      ....++++|.++++|+++++++.+.+.+.+++..+++ .||+||++..++......   .......+|+|.++++++++|
T Consensus       255 ~~~~~~~l~~~~~~G~~l~~~~~~~~~~~~~~~~i~~-~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d  333 (511)
T 3e7w_A          255 SQDLLPHADTFMFCGEVLPVSVAKALLERFPKAKIFN-TYGPTEATVAVTSVEITNDVISRSESLPVGFAKPDMNIFIMD  333 (511)
T ss_dssp             STTTCTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEE-CCCCGGGSSCSEEEEECHHHHTTCSSCCCBEECTTCEEEEEC
T ss_pred             ccccCCcccEEEEecCCCCHHHHHHHHHHCCCcEEEe-CcccchheeeeeEEeccccccccCCcCCCcceeCCCEEEEEC
Confidence            7778899999999999999999999999997789999 999999988766532211   123455799999999999999


Q ss_pred             CCCCCCCCCCCceEEEEecCccchhhcCCccccccccc-CCC--eEecCceEEEcCCCcEEEEcccCCceeeccEEeecC
Q 026609          159 VDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQATKLTID-KKG--WVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSN  235 (236)
Q Consensus       159 ~~~~~~~~~g~~Gel~v~~~~~~~~~~~~~~~~~~~~~-~~~--~~~TgD~~~~~~~g~~~~~GR~~d~i~~~G~~i~p~  235 (236)
                       ++++++++|+.|||+|+|+.++.||+++++.+...|. .+|  ||+|||++++ +||.+++.||+||+||++|+||+|.
T Consensus       334 -~~g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~g~~~~~TGDlg~~-~dG~l~~~GR~~d~ik~~G~~v~p~  411 (511)
T 3e7w_A          334 -EEGQPLPEGEKGEIVIAGPSVSRGYLGEPELTEKAFFSHEGQWAYRTGDAGFI-QDGQIFCQGRLDFQIKLHGYRMELE  411 (511)
T ss_dssp             -TTSCBCCTTCCEEEEEESTTSCCCBTTCHHHHHHHEEESSSSEEEEEEEEEEE-ETTEEEEEEESSSEEEETTEEEEHH
T ss_pred             -CCCCCCCCCCceEEEEecCccChhhCCCcccchhhhcCCCCCEEEeCCCeEEc-cCCeEEEEccccCEEEECCEEeCHH
Confidence             5799999999999999999999999999999988873 223  7999999999 6999999999999999999999996


Q ss_pred             C
Q 026609          236 W  236 (236)
Q Consensus       236 ~  236 (236)
                      |
T Consensus       412 e  412 (511)
T 3e7w_A          412 E  412 (511)
T ss_dssp             H
T ss_pred             H
Confidence            5

>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*

Probab=100.00  E-value=5.9e-41  Score=285.79  Aligned_cols=221  Identities=22%  Similarity=0.355  Sum_probs=196.6

Q ss_pred             eccC--CCCcEEEEecChhhHHhHHHHHHHHhhcCcEEEEcCCCCHHHHHHHHHhcCceEEEeChHHHHHHHhcCC--cC
Q 026609            7 ETAG--ELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGL--VK   82 (236)
Q Consensus         7 ~~~~--~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~--~~   82 (236)
                      .++.  .++|++++.+|++|.+|+...++.++..|+++++.+.+++..+++.++++++|+++++|++++.|++...  ..
T Consensus       188 ~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~  267 (504)
T 1t5h_X          188 QVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGS  267 (504)
T ss_dssp             TTCCCSSTTCEEEECSCTTSHHHHTTTHHHHHHTTCEEEECSSCCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHCCTTC
T ss_pred             hhCCCCCCCceEEeecchhhcchHHHHHHHHHHcCceEEeCCCCCHHHHHHHHHHhCCeEEEeChHHHHHHHhhhccccc
Confidence            3455  7789999999999999986678899999999999999999999999999999999999999999988652  24


Q ss_pred             CCCCCCceEEeecCCCCCHHHHHHHHHhCCCCceeeccccccccccccccccCCCCCCCCCCccccCCCcEEEEEeCCCC
Q 026609           83 KFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQ  162 (236)
Q Consensus        83 ~~~l~~lr~i~~~G~~~~~~~~~~~~~~~~~~~v~~~~YG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~  162 (236)
                      ..+++++|.++++|+++++++.+.|.+.++ ..+++ .||+||++. +....    ....+.+|.|.++++++++|. .+
T Consensus       268 ~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~-~~~~~-~YG~TE~~~-~~~~~----~~~~~~~g~p~~~~~~~i~~~-~~  339 (504)
T 1t5h_X          268 SLKLDSLRHVTFAGATMPDAVLETVHQHLP-GEKVN-IYGTTEAMN-SLYMR----QPKTGTEMAPGFFSEVRIVRI-GG  339 (504)
T ss_dssp             CCCCTTCCEEEECCTTCCHHHHHHHHHHCC-SEEEE-EEEETTTEE-EEEEE----SCSSSSEEBCCTTCCEEEECT-TS
T ss_pred             cccCccccEEEEcCCcCCHHHHHHHHHhcC-cceee-eeccccccc-ccccc----CCCCCccccCCCCCceeEEec-cC
Confidence            456889999999999999999999999997 78888 999999933 22211    234577899999999999995 45


Q ss_pred             ---CCCCCCCceEEEEe-cCccchhhcCCcccccccccCCCeEecCceEEEcCCCcEEEEcccCCceeeccEEeecCC
Q 026609          163 ---KPLPPNQLGEIWLR-GPNMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSNW  236 (236)
Q Consensus       163 ---~~~~~g~~Gel~v~-~~~~~~~~~~~~~~~~~~~~~~~~~~TgD~~~~~~~g~~~~~GR~~d~i~~~G~~i~p~~  236 (236)
                         ++++.|+.|||+++ ++.++.||+++++.+...| .+|||+|||++++++||++++.||+||+||++|++|+|.|
T Consensus       340 ~~~~~~~~g~~GEl~v~gg~~~~~GY~~~~~~t~~~f-~~g~~~TGDlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~e  416 (504)
T 1t5h_X          340 GVDEIVANGEEGELIVAASDSAFVGYLNQPQATAEKL-QDGWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSE  416 (504)
T ss_dssp             CTTCBCCTTCCEEEEEECCTTSCCCBTTCHHHHHHHE-ETTEEEEEEEEEECTTSCEEEEEEGGGCEEETTEEECHHH
T ss_pred             CCCCcCCCCCcceEEEeCCceeeceecCCchhhhhhh-cCCccccCcEEEECCCceEEEeCcccCEEEECCEEECHHH
Confidence               89999999999999 8999999999999999888 7899999999999999999999999999999999999865

>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1

Probab=100.00  E-value=2.4e-41  Score=296.35  Aligned_cols=230  Identities=20%  Similarity=0.321  Sum_probs=201.8

Q ss_pred             eeccCCCCcEEEEecChhhHHhHHHHHHHHhhcCcEEEEcCC----CCHHHHHHHHHhcCceEEEeChHHHHHHHhcCC-
Q 026609            6 QETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK----FDLEMFLRAIEKHRVTHIWVVPPLILALAKHGL-   80 (236)
Q Consensus         6 ~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~-   80 (236)
                      ..+++.++|++++.+|++|..|+...++.++..|+++++.+.    +++..+++.++++++|+++++|++++.|++... 
T Consensus       297 ~~~~~~~~d~~~~~~~~~~~~g~~~~~~~~L~~G~t~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~~  376 (663)
T 1ry2_A          297 YTFDTHQEDVFFTAGDIGWITGHTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGDS  376 (663)
T ss_dssp             HHSCCCSSCEEEECSCTTSHHHHHHTTHHHHHHTSEEEEECSCTTSSCTTHHHHHHHHTTCSEEEECHHHHHHHTTSCTT
T ss_pred             HhcCCCCCcEEEEcCCcHHhhhhHHHHHHHHHhCCEEEEECCCCCCCCHHHHHHHHHHcCCCEEEecHHHHHHHHhcCcc
Confidence            457788999999999999999997778899999999999864    578999999999999999999999999987654 


Q ss_pred             -cCCCCCCCceEEeecCCCCCHHHHHHHHHhCC--CCceeeccccccccccccccccC-CCCCCCCCCccccCCCcEEEE
Q 026609           81 -VKKFDLSSLKLVGSGAAPLGKELMEECAKNVP--SATVIQVGYGLTETSGIATMENS-FAGSRNIGSAGALAPGVEALI  156 (236)
Q Consensus        81 -~~~~~l~~lr~i~~~G~~~~~~~~~~~~~~~~--~~~v~~~~YG~tE~g~~~~~~~~-~~~~~~~~~~g~p~~~~~~~~  156 (236)
                       ....+++++|.++++||++++++++++.+.++  ...+++ .||+||++..+..... .....+++.+|+|++++++++
T Consensus       377 ~~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~g~~~~~i~~-~YG~TE~~~~~~~~~~~~~~~~~~gs~G~p~~g~~v~i  455 (663)
T 1ry2_A          377 YIENHSLKSLRCLGSVGEPIAAEVWEWYSEKIGKNEIPIVD-TYWQTESGSHLVTPLAGGVTPMKPGSASFPFFGIDAVV  455 (663)
T ss_dssp             SSSSCCCTTCCEEEECSSCCCHHHHHHHHHTTSCSSSCEEE-CBCCTTTCSCSEECCTTTCCCCCTTCCCEECTTCCEEE
T ss_pred             ccccCCcCceEEEEEEcCCCCHHHHHHHHHHhCCCCceEEE-eECCccccCeeeccCCCCCcccCCCccccCcCCCeEEE
Confidence             24457899999999999999999999999886  377888 9999999876665432 222456788999999999999


Q ss_pred             EeCCCCCCCCC-CCceEEEEec--CccchhhcCCccccccccc--CCCeEecCceEEEcCCCcEEEEcccCCceeeccEE
Q 026609          157 VSVDTQKPLPP-NQLGEIWLRG--PNMMRGYYNNEQATKLTID--KKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQ  231 (236)
Q Consensus       157 ~~~~~~~~~~~-g~~Gel~v~~--~~~~~~~~~~~~~~~~~~~--~~~~~~TgD~~~~~~~g~~~~~GR~~d~i~~~G~~  231 (236)
                      +|++++++++. |+.|||++++  |+++.+||++++.+...+.  .+|||+|||++++++||++++.||+||+||++|++
T Consensus       456 ~d~~~g~~v~~~g~~Gel~i~g~~p~~~~gy~~~~~~~~~~~~~~~~g~y~TGDlg~~d~dG~l~i~GR~dd~Ik~~G~r  535 (663)
T 1ry2_A          456 LDPNTGEELNTSHAEGVLAVKAAWPSFARTIWKNHDRYLDTYLNPYPGYYFTGDGAAKDKDGYIWILGRVDDVVNVSGHR  535 (663)
T ss_dssp             ECSSSTTCEECSSCEEEEEESSCCTTSCCEETTCHHHHHHHHTSSSTTSEEEEEEEEECTTCCEEECSCTTSCBCSSSCC
T ss_pred             EcCCCCCcCCCCCcceEEEEecCCCchhcccccChHHHHHhhhcCCCCEEEcCCEEEEcCCCCEEEEeecCCEEEECCEE
Confidence            99658999988 9999999999  5899999999998877763  37899999999999999999999999999999999


Q ss_pred             eecCC
Q 026609          232 VTSNW  236 (236)
Q Consensus       232 i~p~~  236 (236)
                      |+|.|
T Consensus       536 I~~~e  540 (663)
T 1ry2_A          536 LSTAE  540 (663)
T ss_dssp             BCHHH
T ss_pred             cCHHH
Confidence            99865

>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}

Probab=100.00  E-value=9.2e-41  Score=286.14  Aligned_cols=225  Identities=20%  Similarity=0.314  Sum_probs=194.9

Q ss_pred             eeccCCCCcEEEEecChhhHHhHHHHHHHHhhcCcEEEEc-CCCCHHHHHHHHHhcCceEEEeChHHHHHHHhcCCcCCC
Q 026609            6 QETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILM-AKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKF   84 (236)
Q Consensus         6 ~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~-~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~   84 (236)
                      ..++..++|++++.+|++|.+|+...++.++..|+++++. +.+++..+++.++++++|.++++|+++..+++.......
T Consensus       218 ~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~  297 (529)
T 2v7b_A          218 PILGIAENDVVFSAAKLFFAYGLGNGLTFPLSVGATAILMAERPTADAIFARLVEHRPTVFYGVPTLYANMLVSPNLPAR  297 (529)
T ss_dssp             CCCCCCTTCEEEESSCTTSHHHHHHHTHHHHHHTCEEECCCSCCCHHHHHHHHHHSCCSEEEECHHHHHHHHTCTTCCCG
T ss_pred             hccCCCCCcEEEEeecHHHHHHHHHHHHHHHhcCcEEEEecCCCCHHHHHHHHHHhCCEEEEecHHHHHHHHhCcccccc
Confidence            4567888999999999999999976778899999999987 578999999999999999999999999999886543332


Q ss_pred             CCCCceEEeecCCCCCHHHHHHHHHhCCCCceeeccccccccccccccccCCCCCCCCCCccccCCCcEEEEEeCCCCCC
Q 026609           85 DLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKP  164 (236)
Q Consensus        85 ~l~~lr~i~~~G~~~~~~~~~~~~~~~~~~~v~~~~YG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~  164 (236)
                      ...++|.++++|+++++++.+.|.+.++ ..+++ .||+||++.++......  ....+.+|+|+++++++++| +++++
T Consensus       298 ~~~~lr~~~~gGe~l~~~~~~~~~~~~g-~~i~~-~YG~TE~~~~~~~~~~~--~~~~~~~G~p~~~~~~~i~d-~~g~~  372 (529)
T 2v7b_A          298 ADVAIRICTSAGEALPREIGERFTAHFG-CEILD-GIGSTEMLHIFLSNRAG--AVEYGTTGRPVPGYEIELRD-EAGHA  372 (529)
T ss_dssp             GGCCCCEEEECSSCCCHHHHHHHHHHHS-CCEEE-EEECTTTSSEEEECCTT--CCCTTSCCEECTTCEEEEEC-TTSCB
T ss_pred             cCCceEEEEEcCCCCCHHHHHHHHHHhC-Cceee-eEchhhcCceeeccccC--CCccCCcccCCCCCEEEEEC-CCCCC
Confidence            1238999999999999999999999886 88998 99999997665543222  24567899999999999999 67999


Q ss_pred             CCCCCceEEEEecCccchhhcCCcccccccccCCCeEecCceEEEcCCCcEEEEcccCCceeeccEEeecCC
Q 026609          165 LPPNQLGEIWLRGPNMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSNW  236 (236)
Q Consensus       165 ~~~g~~Gel~v~~~~~~~~~~~~~~~~~~~~~~~~~~~TgD~~~~~~~g~~~~~GR~~d~i~~~G~~i~p~~  236 (236)
                      +++|+.|||+|+|+.++.+|+++++.+...| .++||+|||+++++++|++++.||+||+||++|++|+|.|
T Consensus       373 ~~~g~~GEl~v~g~~~~~gY~~~~~~t~~~f-~~~~~~TGDl~~~~~~G~l~~~GR~dd~ik~~G~~v~p~e  443 (529)
T 2v7b_A          373 VPDGEVGDLYIKGPSAAVMYWNNREKSRATF-LGEWIRSGDKYCRLPNGCYVYAGRSDDMLKVSGQYVSPVE  443 (529)
T ss_dssp             CCTTSCEEEEEECTTCCCCBTTCHHHHHHHE-ETTEEEEEEEEEECTTSCEEEEEEGGGCBC----CBCHHH
T ss_pred             CCCCCccEEEEecCCcccccCCChHHHHHhh-hcCCcccCceEEECCCccEEEeCccCCeEEECCEEECHHH
Confidence            9999999999999999999999999998888 5899999999999999999999999999999999999864

>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A

Probab=100.00  E-value=1.4e-40  Score=287.23  Aligned_cols=225  Identities=23%  Similarity=0.273  Sum_probs=182.3

Q ss_pred             eeccCCCCcEEEEecChhhHHhHHHHHHHHhhcCcEEEEcC--CCCHHHHHHHHHhcCceEEEeChHHHHHHHhcCCcCC
Q 026609            6 QETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA--KFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKK   83 (236)
Q Consensus         6 ~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~--~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~   83 (236)
                      ...+..++|++++.+|++|..+. ..++.+++.|+++++.+  .+++..+++.++++++|.+.++|+++..|++...   
T Consensus       247 ~~~~~~~~d~~l~~~p~~~~~~~-~~~~~~l~~G~~~v~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~---  322 (570)
T 4gr5_A          247 DYAGFGPDEVFLQCSPVSWDAFG-LELFGALLFGARCVLQSGQNPDPLEIGELVARHGVTMLQLSASLFNFLVDEVP---  322 (570)
T ss_dssp             CSSCCSTTCEEEECSCTTSSTHH-HHHHHHHTTTCEEEECSSSSCCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHCG---
T ss_pred             hhcCCCCCCEEEEecCccHHHHH-HHHHHHHhcCCEEEEcCCccCCHHHHHHHHHHcCCcEEEecHHHHHHHHhhch---
Confidence            34577889999999999997666 67889999999999987  4789999999999999999999999999987643   


Q ss_pred             CCCCCceEEeecCCCCCHHHHHHHHHhCCCCceeeccccccccccccccccCC--CCCCCCCCccccCCCcEEEEEeCCC
Q 026609           84 FDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVGYGLTETSGIATMENSF--AGSRNIGSAGALAPGVEALIVSVDT  161 (236)
Q Consensus        84 ~~l~~lr~i~~~G~~~~~~~~~~~~~~~~~~~v~~~~YG~tE~g~~~~~~~~~--~~~~~~~~~g~p~~~~~~~~~~~~~  161 (236)
                      ..++++|.++++|+++++++.+.+.+.+++..+++ .||+||++.+++.....  ........+|+|+++++++++| ++
T Consensus       323 ~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~~-~YG~TE~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~v~i~d-~~  400 (570)
T 4gr5_A          323 EAFEGVRYAITGGEPASVPHVAKARRDHPALRLGN-GYGPAESMGFTTHHAVVAGDLSGTALPIGVPLAGKRAYVLD-DD  400 (570)
T ss_dssp             GGGTTCSEEEEESSCCCHHHHHHHHHHCTTCEEEE-EECCGGGCSCSEEEECCGGGTTSSSCCCBEECTTEEEEEEC-TT
T ss_pred             hhCCCceEEEEecccCCHHHHHHHHHhCCCcEEEE-eechhhheeeeeeeeecccccCCCccccceeeCCCEEEEEC-CC
Confidence            25789999999999999999999999997788888 99999998776643221  1123445689999999999999 67


Q ss_pred             CCCCCCCCceEEEEecCccchhhcCCcccccccccC--------CCeEecCceEEEcCCCcEEEEcccCCceeeccEEee
Q 026609          162 QKPLPPNQLGEIWLRGPNMMRGYYNNEQATKLTIDK--------KGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVT  233 (236)
Q Consensus       162 ~~~~~~g~~Gel~v~~~~~~~~~~~~~~~~~~~~~~--------~~~~~TgD~~~~~~~g~~~~~GR~~d~i~~~G~~i~  233 (236)
                      ++++++|+.|||+|+|+.++.||+++++.+...|..        ++||+|||++++++||++++.||+||+||++|+||+
T Consensus       401 ~~~~~~G~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~~~w~~TGDlg~~d~dG~l~~~GR~~d~Ik~~G~~v~  480 (570)
T 4gr5_A          401 LKPAANGALGELYVAGAGLAHGYVSRPALTAERFVADPFAGPGGERMYRTGDLARRRADGVLEYVGRADDQVKIRGFRVE  480 (570)
T ss_dssp             SCBCCTTCEEEEEEEETTCCCEETTCHHHHHHHEEECTTCCSSCCEEEEEEEEEEECTTSCEEEEEC-------------
T ss_pred             CCCCCCCCcEEEEEeecccchhcCCCchhhhcccccCCCCCCCCCEEEeCCCeEEECCCCeEEEEcccCCEEEECcEEeC
Confidence            999999999999999999999999999998887743        379999999999999999999999999999999999


Q ss_pred             cCC
Q 026609          234 SNW  236 (236)
Q Consensus       234 p~~  236 (236)
                      |.|
T Consensus       481 p~e  483 (570)
T 4gr5_A          481 PGE  483 (570)
T ss_dssp             ---
T ss_pred             HHH
Confidence            986

>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*

Probab=100.00  E-value=1.7e-40  Score=288.81  Aligned_cols=226  Identities=21%  Similarity=0.279  Sum_probs=197.2

Q ss_pred             eeccCCCCcEEEEecChhhHHhHHHHHHHHhhcCcEEEEcC--CCCHHHHHHHHHhcCceEEEeChHHHHHHHhcCCcCC
Q 026609            6 QETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA--KFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKK   83 (236)
Q Consensus         6 ~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~--~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~   83 (236)
                      ..++..++|++++.+|++|..++ ..++.++..|+++++.+  .+++..+++.++++++|.++++|++++.|++..   .
T Consensus       197 ~~~~~~~~d~~l~~~p~~~~~~~-~~~~~~l~~G~~~v~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~---~  272 (620)
T 4dg8_A          197 SFLAFAPQMRFLVNSPLSFDAAT-LEIWGALLNGGCCVLNDLGPLDPGVLRQLIGERGADSAWLTASLFNTLVDLD---P  272 (620)
T ss_dssp             GGGTTCTTCEEEECSCTTSTHHH-HHHHHHHTTTCEEEECCSSSCCHHHHHHHHHTTCCCEEEEEHHHHHHHHHHC---G
T ss_pred             HhhCCCCCCEEEEECccCHHHHH-HHHHHHHhcCCEEEeCccccCCHHHHHHHHHHhCCcEEEccHHHHHHHHhcC---h
Confidence            35678889999999999999998 67899999999999975  579999999999999999999999999998753   2


Q ss_pred             CCCCCceEEeecCCCCCHHHHHHHHHhCCCCceeeccccccccccccccccC--CCCCCCCCCccccCCCcEEEEEeCCC
Q 026609           84 FDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVGYGLTETSGIATMENS--FAGSRNIGSAGALAPGVEALIVSVDT  161 (236)
Q Consensus        84 ~~l~~lr~i~~~G~~~~~~~~~~~~~~~~~~~v~~~~YG~tE~g~~~~~~~~--~~~~~~~~~~g~p~~~~~~~~~~~~~  161 (236)
                      ..++++|.+++|||++++++.+.+.+.+++..+++ .||+||++.+++....  .........+|+|+++++++++|++.
T Consensus       273 ~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n-~YG~TE~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d~~~  351 (620)
T 4dg8_A          273 DCLGGLRQLLTGGDILSVPHVRRALLRHPRLHLVN-GYGPTENTTFTCCHVVTDDDLEEDDIPIGKAIAGTAVLLLDEHG  351 (620)
T ss_dssp             GGGTTCSEEEEESSCCCHHHHHHHHHHCTTCEEEE-EECCGGGCSCSEEEECCTGGGGSSSCCCBEECTTEEEEEECTTS
T ss_pred             hhCCCccEEEEEeCcCCHHHHHHHHHhCCCeEEEe-eEchhhhhhheEEEeccccccCCCCCCceecccCcEEEEECccC
Confidence            35789999999999999999999998887788999 9999999887654322  11234456899999999999999544


Q ss_pred             CCCCCCCCceEEEEecCccchhhcCCcccccccccCC-------CeEecCceEEEcCCCcEEEEcccCCceeeccEEeec
Q 026609          162 QKPLPPNQLGEIWLRGPNMMRGYYNNEQATKLTIDKK-------GWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTS  234 (236)
Q Consensus       162 ~~~~~~g~~Gel~v~~~~~~~~~~~~~~~~~~~~~~~-------~~~~TgD~~~~~~~g~~~~~GR~~d~i~~~G~~i~p  234 (236)
                      ..+++.|+.|||+|+|+.++.||+++++.+...|..+       +||+|||++++++||.++|.||+||+||++|+||+|
T Consensus       352 ~~~~~~g~~GEl~i~G~~v~~GY~~~p~~t~~~f~~~p~~~~~~~~yrTGDl~~~~~dG~l~~~GR~dd~Ik~~G~ri~~  431 (620)
T 4dg8_A          352 QEIAEPDRAGEIVAFGAGLAQGYRNDAARTRASFVELPYRGRLLRAYRTGDRARYDEQGRLRFIGRGDGQVKLNGYRLDL  431 (620)
T ss_dssp             CBCCSSSCCEEEEEEETTCCSEETTCHHHHHHHEEEEEETTEEEEEEEEEEEEEECTTSCEEEEECSSSEEEETTEEEEH
T ss_pred             CCCCCCCCceEEEEeccccccccCCChhhhhhhhccCCCCCCCceEEeCCCEEEECCCCeEEEEccCCCEEEECCEEcCH
Confidence            4448999999999999999999999999998888442       799999999999999999999999999999999998


Q ss_pred             CC
Q 026609          235 NW  236 (236)
Q Consensus       235 ~~  236 (236)
                      .|
T Consensus       432 ~e  433 (620)
T 4dg8_A          432 PA  433 (620)
T ss_dssp             HH
T ss_pred             HH
Confidence            65

>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*

Probab=100.00  E-value=5.4e-41  Score=285.99  Aligned_cols=226  Identities=29%  Similarity=0.436  Sum_probs=195.8

Q ss_pred             eeeccCCCCcEEEEecChhhHHhHHHHHHHHhhcCcEEEEcCCCCHHHHHHHHHhcCceEEEeChHHHHHHHhcCCc---
Q 026609            5 DQETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLV---   81 (236)
Q Consensus         5 ~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~---   81 (236)
                      ...++..++|++++.+|++|..|+...++.++..|+++++.+.+++..+++.+ ++++|.++++|+++..|++....   
T Consensus       188 ~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i-~~~~t~~~~~P~~~~~l~~~~~~~~~  266 (505)
T 3nyq_A          188 ADAWQWTGEDVLVQGLPLFHVHGLVLGILGPLRRGGSVRHLGRFSTEGAAREL-NDGATMLFGVPTMYHRIAETLPADPE  266 (505)
T ss_dssp             HHHHTCCTTCEEEECCCTTSHHHHTTTTHHHHHHTCEEEECSSCCHHHHHHHH-TTTCCEEEECHHHHHHHHHHGGGCHH
T ss_pred             HHHhCCCCCcEEEEeccHHHHHHHHHHHHHHHhcCCEEEECCCCChHHHHHHH-hhCCeEEEehHHHHHHHHHhhhcCch
Confidence            34567889999999999999999977789999999999999999999999999 88999999999999999875322   


Q ss_pred             CCCCCCCceEEeecCCCCCHHHHHHHHHhCCCCceeeccccccccccccccccCCCCCCCCCCccccCCCcEEEEEeCCC
Q 026609           82 KKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDT  161 (236)
Q Consensus        82 ~~~~l~~lr~i~~~G~~~~~~~~~~~~~~~~~~~v~~~~YG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~  161 (236)
                      ....++++|.++++|+++++++.+++.+.++ ..+++ .||+||++..+......  ......+|+|+++++++++| ++
T Consensus       267 ~~~~l~~lr~i~~gg~~l~~~~~~~~~~~~~-~~~~~-~YG~TE~~~~~~~~~~~--~~~~~~vG~p~~~~~~~i~d-~~  341 (505)
T 3nyq_A          267 LAKALAGARLLVSGSAALPVHDHERIAAATG-RRVIE-RYGMTETLMNTSVRADG--EPRAGTVGVPLPGVELRLVE-ED  341 (505)
T ss_dssp             HHHHHHHCSEEEECSSCCCHHHHHHHHHHHS-CCCEE-EEEETTTEEEEECCTTS--CCCTTCCCEECTTCEEEEC----
T ss_pred             hhcccccceEEEECCCCCCHHHHHHHHHhcC-Ceeec-ccchhhcccccccCCCC--CCCCCCcccCCCCCEEEEEC-CC
Confidence            1234678999999999999999999999886 78888 99999998766543322  45567899999999999999 56


Q ss_pred             CCCCCC---CCceEEEEecCccchhhcCCcccccccccCCCeEecCceEEEcCCCcEEEEccc-CCceeeccEEeecCC
Q 026609          162 QKPLPP---NQLGEIWLRGPNMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRI-KELIKYKGFQVTSNW  236 (236)
Q Consensus       162 ~~~~~~---g~~Gel~v~~~~~~~~~~~~~~~~~~~~~~~~~~~TgD~~~~~~~g~~~~~GR~-~d~i~~~G~~i~p~~  236 (236)
                      +++++.   |+.|||+|+|+.++.||+++++.+...|..++||+|||++++++||.+++.||+ ||+||++|++|+|.|
T Consensus       342 g~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~y~TGDl~~~~~dG~l~~~GR~~d~~ik~~G~~v~~~e  420 (505)
T 3nyq_A          342 GTPIAALDGESVGEIQVRGPNLFTEYLNRPDATAAAFTEDGFFRTGDMAVRDPDGYVRIVGRKATDLIKSGGYKIGAGE  420 (505)
T ss_dssp             --CCCCCCSCCCEEEEEESTTSCCEETTCHHHHHHTBCTTSCEEEEEEEEECTTSCEEEEEESSCCCEEETTEEECHHH
T ss_pred             CCCcccCCCCceEEEEEecCchhhhhCCChhHhhhhhcCCCCCccCCeEEECCCccEEEeCCccCceEEeCCEEECHHH
Confidence            888776   899999999999999999999999999988999999999999999999999998 699999999999865

>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}

Probab=100.00  E-value=1.9e-40  Score=288.84  Aligned_cols=227  Identities=25%  Similarity=0.389  Sum_probs=199.7

Q ss_pred             eeccCCCCcEEEEecChhhHHhHHH-HHHHHhhcCcEEEEcCCCCHHHHHHHHHhcCceEEEeChHHHHHHHhcCCc--C
Q 026609            6 QETAGELDYVFLCVLPLFHVFGLAV-ITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLV--K   82 (236)
Q Consensus         6 ~~~~~~~~d~~l~~~p~~~~~g~~~-~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~--~   82 (236)
                      ..++..++|++++.+|++|.+++.. .++.++..|+++++.+.+++..+++.++++++|.+.++|+++..+++....  .
T Consensus       218 ~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~  297 (617)
T 3rg2_A          218 EICQFTQQTRYLCAIPAAHNYAMSSPGSLGVFLAGGTVVLAADPSATLCFPLIEKHQVNVTALVPPAVSLWLQALIEGES  297 (617)
T ss_dssp             HHHTCCTTCEEEECSCTTSHHHHHSSHHHHHHHHTCEEEECSSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHTTCC
T ss_pred             HhcCCCCcceEEEeccchhhhhhhHHHHHHHHHcCCEEEEeCCCCHHHHHHHHHHhCCcEEEcchHHHHHHHHhhhcccc
Confidence            4567889999999999999998854 588999999999999989999999999999999999999999999876433  2


Q ss_pred             CCCCCCceEEeecCCCCCHHHHHHHHHhCCCCceeeccccccccccccccccCCCCCCCCCCccccC-CCcEEEEEeCCC
Q 026609           83 KFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVGYGLTETSGIATMENSFAGSRNIGSAGALA-PGVEALIVSVDT  161 (236)
Q Consensus        83 ~~~l~~lr~i~~~G~~~~~~~~~~~~~~~~~~~v~~~~YG~tE~g~~~~~~~~~~~~~~~~~~g~p~-~~~~~~~~~~~~  161 (236)
                      ...++++|.+++|||++++++.++|.+.++ ..+++ .||+||++..+...... .......+|+|+ ++.++.++| ++
T Consensus       298 ~~~l~~lr~i~~gGe~l~~~~~~~~~~~~~-~~~~~-~YG~tE~~~~~~~~~~~-~~~~~~~~G~p~~~~~~~~i~d-~~  373 (617)
T 3rg2_A          298 RAQLASLKLLQVGGARLSATLAARIPAEIG-CQLQQ-VFGMAEGLVNYTRLDDS-AEKIIHTQGYPMCPDDEVWVAD-AE  373 (617)
T ss_dssp             TTTTTTCCEEEEESSCCCHHHHHHHHHHTC-SEEEE-EEEETTEEEEECCTTSC-HHHHHHCCCEESCTTCEEEEEC-TT
T ss_pred             cccCCCccEEEEcCCcCCHHHHHHHHHHhC-CcEEE-EeccCcceeecccCCCc-ccccccCCCccCCCCceEEEEC-CC
Confidence            337889999999999999999999999986 88888 99999998655432211 112234678887 788999999 68


Q ss_pred             CCCCCCCCceEEEEecCccchhhcCCcccccccccCCCeEecCceEEEcCCCcEEEEcccCCceeeccEEeecCC
Q 026609          162 QKPLPPNQLGEIWLRGPNMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSNW  236 (236)
Q Consensus       162 ~~~~~~g~~Gel~v~~~~~~~~~~~~~~~~~~~~~~~~~~~TgD~~~~~~~g~~~~~GR~~d~i~~~G~~i~p~~  236 (236)
                      +++++.|+.|||+|+|+.++.||+++++.+...|..++||+|||++++++||.++++||+||+||++|++|+|.|
T Consensus       374 ~~~~p~G~~GEl~i~G~~v~~GY~~~p~~t~~~f~~~~~yrTGDl~~~~~dG~l~~~GR~dd~iki~G~ri~~~e  448 (617)
T 3rg2_A          374 GNPLPQGEVGRLMTRGPYTFRGYYKSPQHNASAFDANGFYCSGDLISIDPEGYITVQGREKDQINRGGEKIAAEE  448 (617)
T ss_dssp             SCBCCTTCCEEEEEECSSSCSCCTTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEEECSSEEEETTEEEEHHH
T ss_pred             CCCCCCCCceEEEecCccccchhcCChhhhhhccCCCCceecCceEEEcCCceEEEEeecCCEEEECCEEeCHHH
Confidence            999999999999999999999999999999999988999999999999999999999999999999999999865

>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*

Probab=100.00  E-value=3.7e-40  Score=281.93  Aligned_cols=226  Identities=20%  Similarity=0.240  Sum_probs=196.6

Q ss_pred             ccCCCCcEEEEecChhhHHhHHHHHHHHhhcCcEEEEcCCC---CHHHHHHHHHhcCceEEEeChHHHHHHHhcCCcCCC
Q 026609            8 TAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKF---DLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKF   84 (236)
Q Consensus         8 ~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~---~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~   84 (236)
                      ++..+++++++.+|++|..++ ..++.++..|+++++.+..   ++..+++.++++++|.+.++|+++..++........
T Consensus       183 ~~~~~~~~~l~~~~~~~~~~~-~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~  261 (521)
T 3l8c_A          183 FDVPKQPQMLAQPPYSFDLSV-MYWAPTLALGGTLFALPKELVADFKQLFTTIAQLPVGIWTSTPSFADMAMLSDDFCQA  261 (521)
T ss_dssp             TCCCSSCEEECCSCTTSGGGH-HHHHHHHHTTCEEEECCGGGTTCHHHHHHHHHHSCCSEEEECHHHHHHHHTSTTCSTT
T ss_pred             cCCCCCCeEEecCCccHHHHH-HHHHHHHhcCCEEEEcCHHHhhCHHHHHHHHHHcCCcEEEeCCCHHHHHhhhhccccc
Confidence            567788999999999999988 6788899999999998753   899999999999999999999999999888776777


Q ss_pred             CCCCceEEeecCCCCCHHHHHHHHHhCCCCceeeccccccccccccccccCCC---CCCCCCCccccCCCcEEEEEeCCC
Q 026609           85 DLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVGYGLTETSGIATMENSFA---GSRNIGSAGALAPGVEALIVSVDT  161 (236)
Q Consensus        85 ~l~~lr~i~~~G~~~~~~~~~~~~~~~~~~~v~~~~YG~tE~g~~~~~~~~~~---~~~~~~~~g~p~~~~~~~~~~~~~  161 (236)
                      .++++|.++++|+++++++.+.+.+.+++..+++ .||+||++.+++......   .......+|+|.++++++++| ++
T Consensus       262 ~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~i~~-~YG~TE~~~~~~~~~~~~~~~~~~~~~~vG~p~~~~~~~i~d-~~  339 (521)
T 3l8c_A          262 KMPALTHFYFDGEELTVSTARKLFERFPSAKIIN-AYGPTEATVALSAIEITREMVDNYTRLPIGYPKPDSPTYIID-ED  339 (521)
T ss_dssp             TCTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEE-EECCGGGSSCSEEEEECHHHHHHCSSCEEEEECTTSCEEEEC-TT
T ss_pred             cCccceEEEEecccCCHHHHHHHHHHCCCceEEe-CcCccHHhhhhceeecccccccCCCccccccccCCCEEEEEC-CC
Confidence            8899999999999999999999999997789999 999999988766432211   122345799999999999999 57


Q ss_pred             CCCCCCCCceEEEEecCccchhhcCCcccccccc---cCCCeEecCceEEEcCCCcEEEEcccCCceeeccEEeecCC
Q 026609          162 QKPLPPNQLGEIWLRGPNMMRGYYNNEQATKLTI---DKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSNW  236 (236)
Q Consensus       162 ~~~~~~g~~Gel~v~~~~~~~~~~~~~~~~~~~~---~~~~~~~TgD~~~~~~~g~~~~~GR~~d~i~~~G~~i~p~~  236 (236)
                      +++++.|+.|||+|+|+.++.||+++++.+...|   +.++||+|||+++++++|++++.||+||+||++|+||+|.|
T Consensus       340 g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~TGDlg~~d~dG~l~~~GR~~d~i~~~G~~v~p~e  417 (521)
T 3l8c_A          340 GKELSSGEQGEIIVTGPAVSKGYLNNPEKTAEAFFTFKGQPAYHTGDIGSLTEDNILLYGGRLDFQIKYAGYRIELED  417 (521)
T ss_dssp             SCBCCTTCCEEEEEESTTSCSCBTTCHHHHHHHEEEETTEEEEEEEEEEEECSSSCEEEEEEGGGBCC-----CBHHH
T ss_pred             cCCCCCCCceEEEecccccChhhcCCchHhhccCcCCCCceeeeCCCEEEEeCCCeEEEeCcccceEeECCEEeCHHH
Confidence            9999999999999999999999999999998877   45689999999999999999999999999999999999964

>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=100.00  E-value=2.2e-39  Score=275.90  Aligned_cols=217  Identities=25%  Similarity=0.410  Sum_probs=190.0

Q ss_pred             eeeccCCCCcEEEEecChhhHHhHHHHHHHHhhcCcEEEEcCCCCHHHHHHHHHhcCceEEEeChHHHHHHHhcCCcCCC
Q 026609            5 DQETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKF   84 (236)
Q Consensus         5 ~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~   84 (236)
                      ...++..++|++++.+|++|.+|+ ..++.+++.|+++++.+.+++..+++.++++++|.++++|+++..|++...... 
T Consensus       196 ~~~~~~~~~d~~l~~~p~~~~~g~-~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~-  273 (501)
T 3ipl_A          196 KESLGFDRDTNWLSVLPIYHISGL-SVLLRAVIEGFTVRIVDKFNAEQILTMIKNERITHISLVPQTLNWLMQQGLHEP-  273 (501)
T ss_dssp             HHHTCCCTTCEEEECSCTTSHHHH-HHHHHHHHHTCEEEECSSCCHHHHHHHHHHSCCCEEEECHHHHHHHHHHTCCSC-
T ss_pred             HHhhCCCccCEEEEeCcHHHHHHH-HHHHHHHHcCceEEeCCCCCHHHHHHHHHHcCCcEEEchHHHHHHHHhcCCCCc-
Confidence            345678899999999999999999 558899999999999999999999999999999999999999999998764433 


Q ss_pred             CCCCceEEeecCCCCCHHHHHHHHHhCCCCceeeccccccccccccccccCCCCCCCCCCccccCCCcEEEEEeCCCCCC
Q 026609           85 DLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKP  164 (236)
Q Consensus        85 ~l~~lr~i~~~G~~~~~~~~~~~~~~~~~~~v~~~~YG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~  164 (236)
                        .++|.++++|+++++++.+.+.+.  +..+++ .||+||++..+..............+|+|+++++++++|++    
T Consensus       274 --~~lr~i~~gG~~l~~~~~~~~~~~--~~~~~~-~YG~TE~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~----  344 (501)
T 3ipl_A          274 --YNLQKILLGGAKLSATMIETALQY--NLPIYN-SFGMTETCSQFLTATPEMLHARPDTVGMPSANVDVKIKNPN----  344 (501)
T ss_dssp             --TTCCEEEECSSCCCHHHHHHHHHT--TCCEEE-EEEEGGGTEEEEEECHHHHHHCTTCCBEECTTCEEEEESCC----
T ss_pred             --CcccEEEEeCCCCCHHHHHHHHHh--CCCEec-cccccccccceeecCccccccCCCCCCCCCCCcEEEEecCC----
Confidence              289999999999999999999874  488999 99999998765543332223456789999999999999954    


Q ss_pred             CCCCCceEEEEecCccchhhcCCcccccccccCCCeEecCceEEEcCCCcEEEEcccCCceeeccEEeecCC
Q 026609          165 LPPNQLGEIWLRGPNMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSNW  236 (236)
Q Consensus       165 ~~~g~~Gel~v~~~~~~~~~~~~~~~~~~~~~~~~~~~TgD~~~~~~~g~~~~~GR~~d~i~~~G~~i~p~~  236 (236)
                        .|+.|||+|+|+.++.||+++++.+.. + .+|||+|||+++++++|.+++.||+||+||++|++|+|.|
T Consensus       345 --~~~~GEl~v~g~~~~~gY~~~~~~t~~-~-~~g~~~TGDl~~~~~~G~l~~~GR~dd~ik~~G~~v~p~e  412 (501)
T 3ipl_A          345 --KEGHGELMIKGANVMNGYLYPTDLTGT-F-ENGYFNTGDIAEIDHEGYVMIYDRRKDLIISGGENIYPYQ  412 (501)
T ss_dssp             --SSCCEEEEEESTTSCSCCSBSTTCCCS-E-ETTEEEEEEEEEECTTSCEEEEEECCCCEECSSCEECHHH
T ss_pred             --CCCccEEEEeccchhhhhCcChhhcch-h-cCCceecCCEEEEcCCCeEEEEccccceEEECCEEECHHH
Confidence              466799999999999999999988877 5 7899999999999999999999999999999999999864

>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1

Probab=100.00  E-value=2e-39  Score=279.54  Aligned_cols=219  Identities=19%  Similarity=0.222  Sum_probs=190.9

Q ss_pred             eeccCCCCcEEEEecChhhHHhHHHHHHHHhhcCcEEEEcCC---CCHHHHHHHHHhcCceEEEeChHHHHHHHhcCCcC
Q 026609            6 QETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK---FDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVK   82 (236)
Q Consensus         6 ~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~---~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~   82 (236)
                      ..++..++|++++.+|++|..++ ..++.+++.|+++++.+.   +++..+++.++++++|.+.++|+++..|..     
T Consensus       216 ~~~~~~~~d~~l~~~p~~~~~~~-~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~-----  289 (563)
T 1amu_A          216 NSLNVTEKDRIGQFASISFDASV-WEMFMALLTGASLYIILKDTINDFVKFEQYINQKEITVITLPPTYVVHLDP-----  289 (563)
T ss_dssp             HTSCCCTTCEEEECSCTTSTHHH-HHHHHHHTTTCEEEECCHHHHTCHHHHHHHHHHTTCCEEEECHHHHTTSCT-----
T ss_pred             HhcCCCCCCEEEEeCCccHHHHH-HHHHHHHHCCCEEEEcChHhhcCHHHHHHHHHHcCCcEEEeCHHHHHHHHh-----
Confidence            45678899999999999999998 577889999999999875   689999999999999999999999876643     


Q ss_pred             CCCCCCceEEeecCCCCCHHHHHHHHHhCCCCceeeccccccccccccccccCCC-CCCCCCCccccCCCcEEEEEeCCC
Q 026609           83 KFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVGYGLTETSGIATMENSFA-GSRNIGSAGALAPGVEALIVSVDT  161 (236)
Q Consensus        83 ~~~l~~lr~i~~~G~~~~~~~~~~~~~~~~~~~v~~~~YG~tE~g~~~~~~~~~~-~~~~~~~~g~p~~~~~~~~~~~~~  161 (236)
                       ..++++|.++++|+++++++.+.|.+.   ..+++ .||+||++.+++...... ......++|+|+++++++++| ++
T Consensus       290 -~~~~~lr~~~~gG~~l~~~~~~~~~~~---~~~~~-~YG~TE~~~~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d-~~  363 (563)
T 1amu_A          290 -ERILSIQTLITAGSATSPSLVNKWKEK---VTYIN-AYGPTETTICATTWVATKETIGHSVPIGAPIQNTQIYIVD-EN  363 (563)
T ss_dssp             -TTCCSCSEEEEESSCCCHHHHHHHTTT---SEEEE-EECCGGGSSCSEEEECCSSCCCSSCCCBEECTTEEEEEEC-TT
T ss_pred             -cccccccEEEEEEecCCHHHHHHHHhC---CeEEE-EECcCHHhHhheeeecccccCCCCCcccceeCCCEEEEEC-CC
Confidence             246789999999999999999998875   67888 999999987766533221 123456799999999999999 67


Q ss_pred             CCCCCCCCceEEEEecCccchhhcCCcccccccccC------CCeEecCceEEEcCCCcEEEEcccCCceeeccEEeecC
Q 026609          162 QKPLPPNQLGEIWLRGPNMMRGYYNNEQATKLTIDK------KGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSN  235 (236)
Q Consensus       162 ~~~~~~g~~Gel~v~~~~~~~~~~~~~~~~~~~~~~------~~~~~TgD~~~~~~~g~~~~~GR~~d~i~~~G~~i~p~  235 (236)
                      +++++.|+.|||+|+|+.++.||+++++.+...|..      ++||+|||++++++||++++.||+||+||++|++|+|.
T Consensus       364 ~~~~~~g~~GEl~v~g~~v~~GY~~~pe~t~~~f~~~~~~~g~~w~~TGDlg~~d~dG~l~i~GR~~d~Ik~~G~~V~p~  443 (563)
T 1amu_A          364 LQLKSVGEAGELCIGGEGLARGYWKRPELTSQKFVDNPFVPGEKLYKTGDQARWLSDGNIEYLGRIDNQVKIRGHRVELE  443 (563)
T ss_dssp             SCBCCTTCEEEEEEEETTCCCEETTCHHHHHHHEEECSSSTTSEEEEEEEEEEECTTSCEEEEEEGGGEEEETTEEEEHH
T ss_pred             cCCCCCCCcEEEEEechhhChhhCCCchhhhhhcccCCCCCCCEEEecCCEEEEcCCCeEEEeccccCEEEECCEEeCHH
Confidence            899999999999999999999999999988877732      46999999999999999999999999999999999996


Q ss_pred             C
Q 026609          236 W  236 (236)
Q Consensus       236 ~  236 (236)
                      |
T Consensus       444 e  444 (563)
T 1amu_A          444 E  444 (563)
T ss_dssp             H
T ss_pred             H
Confidence            5

>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0

Probab=100.00  E-value=3.5e-39  Score=275.14  Aligned_cols=220  Identities=36%  Similarity=0.535  Sum_probs=176.9

Q ss_pred             eeeccCCCCcEEEEecChhhHHhHHHHHHHHhhcCcEEEEcCCCCHHHHHHHHHhcCceEEEeChHHHHHHHhcCCcCCC
Q 026609            5 DQETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKF   84 (236)
Q Consensus         5 ~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~   84 (236)
                      ...++..++|++++.+|++|.+|+...+..++..|++ ++...+++..+++.++++++|.++++|+++..|++..  ...
T Consensus       193 ~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~~~~g~~-~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~--~~~  269 (509)
T 3ivr_A          193 VDAWRLTEADVNLGMLPLFHVTGLGLMLTLQQAGGAS-VIAAKFDPAQAARDIEAHKVTVMAEFAPMLGNILDQA--APA  269 (509)
T ss_dssp             HHHTTCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEE-EECSSCCHHHHHHHHHHHTCCEEEEETTHHHHHHHHC--CGG
T ss_pred             HHhhCCCCCcEEEEeCCCcchhHHHHHHHHHHhCCcE-EEecccCHHHHHHHHHHHCCcEEEecHHHHHHHHhcc--ccc
Confidence            3456788999999999999999995444444554544 4445889999999999999999999999999999876  445


Q ss_pred             CCCCceEEeecCCCCCHHHHHHHHHhCCCCceeeccccccccccccccccCCCCCCCCCCccccCCCcEEEEEeCCCCCC
Q 026609           85 DLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKP  164 (236)
Q Consensus        85 ~l~~lr~i~~~G~~~~~~~~~~~~~~~~~~~v~~~~YG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~  164 (236)
                      .++++|.++.+|++   ++.+.+.+.+++..+++ .||+||++.+++.....   .....+|+|+++++++++| +++++
T Consensus       270 ~l~~lr~~~~~g~~---~~~~~~~~~~~~~~~~~-~YG~TE~~~~~~~~~~~---~~~~~~G~p~~~~~~~i~d-~~~~~  341 (509)
T 3ivr_A          270 QLASLRAVTGLDTP---ETIERFEATCPNATFWA-TFGQSETSGLSTFAPYR---DRPKSAGRPLFWRTVAVVD-AEDRP  341 (509)
T ss_dssp             GGTTCCEEEEECCH---HHHHHHHHHCTTCEEEE-EEEEGGGTEEEEEEEGG---GSTTSCCEECTTCEEEEEC-TTSCB
T ss_pred             chhhhheecccCCh---HHHHHHHHhcCCCeEEc-ccCccccccccccCccc---cCCCcccccCCCcEEEEEC-CCCCC
Confidence            67899999999987   88899999997788999 99999999877654432   2234489999999999999 56999


Q ss_pred             CCCCCceEEEEecCccchhhcCCcccccccccCCCeEecCceEEEcCCCcEEEEccc--CCceeeccEEeecCC
Q 026609          165 LPPNQLGEIWLRGPNMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRI--KELIKYKGFQVTSNW  236 (236)
Q Consensus       165 ~~~g~~Gel~v~~~~~~~~~~~~~~~~~~~~~~~~~~~TgD~~~~~~~g~~~~~GR~--~d~i~~~G~~i~p~~  236 (236)
                      +++|+.|||+|+|+.++.||+++++.+...| .+|||+|||++++++||++++.||+  ||+||++|++|+|.|
T Consensus       342 ~~~g~~GEl~v~g~~~~~gY~~~~~~t~~~f-~~g~~~TGDl~~~~~dG~l~~~GR~d~~d~ik~~G~~v~p~e  414 (509)
T 3ivr_A          342 LPPGEVGEIVLRGPTVFKGYWNNAAATQHAF-RNGWHHTGDMGRFDADGYLFYAGRAPEKELIKTGGENVYPAE  414 (509)
T ss_dssp             CCTTCCEEEEEESTTSCCEETTCHHHHHHHT-GGGSEEEEEEEEECTTSCEEEEEEC-----------------
T ss_pred             CCCCCceEEEEecCCccccccCCHHHhHHHh-hcCCcccccEEEECCCceEEEeCCCCcceeEEECCEEECHHH
Confidence            9999999999999999999999999999988 5899999999999999999999999  999999999999986

>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*

Probab=100.00  E-value=4.4e-40  Score=285.30  Aligned_cols=228  Identities=26%  Similarity=0.336  Sum_probs=194.7

Q ss_pred             eeeccCCCCcEEEEecChhhHHhHHHHHHHHhhcCcEEEEcCCC----CHHHHHHHHHhcCceEEEeChHHHHHHHhcC-
Q 026609            5 DQETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKF----DLEMFLRAIEKHRVTHIWVVPPLILALAKHG-   79 (236)
Q Consensus         5 ~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~-   79 (236)
                      ...++..++|++++++|++|.+|+...++.+++.|+++++.+++    ++..+++.++++++|.+.++|+++..+++.. 
T Consensus       200 ~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~  279 (590)
T 3kxw_A          200 FTSFHMNDETIIFSWLPPHHDMGLIGCILTPIYGGIQAIMMSPFSFLQNPLSWLKHITKYKATISGSPNFAYDYCVKRIR  279 (590)
T ss_dssp             HHHTTCCTTCEEEECSCTTSHHHHHTTTHHHHHHTCEEEECCHHHHHHCTHHHHHHHHHHTCSEEEECTHHHHHHHHHCC
T ss_pred             HHhhCCCCcCeEEEecCCCcchhhHHHHHHHHhcCceEEEeCHHHHHHCHHHHHHHHHHhCCeeecCChhHHHHHHHHhh
Confidence            34567889999999999999999965688999999999998865    7899999999999999999999999988753 


Q ss_pred             --CcCCCCCCCceEEeecCCCCCHHHHHHHHHhCC-----CCceeeccccccccccccccccCC----------------
Q 026609           80 --LVKKFDLSSLKLVGSGAAPLGKELMEECAKNVP-----SATVIQVGYGLTETSGIATMENSF----------------  136 (236)
Q Consensus        80 --~~~~~~l~~lr~i~~~G~~~~~~~~~~~~~~~~-----~~~v~~~~YG~tE~g~~~~~~~~~----------------  136 (236)
                        .....+++++|.++++|+++++++.++|.+.++     +..+++ .||+||++.+++.....                
T Consensus       280 ~~~~~~~~l~~lr~~~~gg~~l~~~~~~~~~~~~~~~g~~~~~~~~-~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (590)
T 3kxw_A          280 EEKKEGLDLSSWVTAFNGAEPVREETMEHFYQAFKEFGFRKEAFYP-CYGLAEATLLVTGGTPGSSYKTLTLAKEQFQDH  358 (590)
T ss_dssp             GGGGTTCCCTTCCEEEECSSCCCHHHHHHHHHHHGGGTCCGGGEEE-EEECGGGSSEEEECCTTSCCCEEEECSCCCSSS
T ss_pred             hhhccCCCchhhHHHhhCCCCCCHHHHHHHHHHHHHcCCCcccccc-ccccccccceeecccCCCCceeeeecHHHHhcC
Confidence              335567899999999999999999999999874     246888 99999998876643211                


Q ss_pred             ---------CCCCCCCCccccCCCcEEEEEeCCCCCCCCCCCceEEEEecCccchhhcCCcccccccccC------CC--
Q 026609          137 ---------AGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQATKLTIDK------KG--  199 (236)
Q Consensus       137 ---------~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~g~~Gel~v~~~~~~~~~~~~~~~~~~~~~~------~~--  199 (236)
                               ........+|+|+++  ++++|++++++++.|+.|||+|+|+.++.||+++++.+...|..      +|  
T Consensus       359 ~~~~~~~~~~~~~~~~~~G~p~~~--v~i~d~~~~~~~~~g~~GEl~v~g~~v~~GY~~~p~~t~~~f~~~~~~~~~g~~  436 (590)
T 3kxw_A          359 RVHFADDNSPGSYKLVSSGNPIQE--VKIIDPDTLIPCDFDQVGEIWVQSNSVAKGYWNQPEETRHAFAGKIKDDERSAI  436 (590)
T ss_dssp             BCCBCCTTCTTCEEEECCCEESSE--EEEECTTTCCBCCTTBCEEEEEESTTSCCCBTTCHHHHHHHHCBCCTTC---CC
T ss_pred             ceeeccCCCCCcceEeccCCCCCC--eEEEcCCCCcCCCCCCEEEEEEeCCcccccccCChhHHHHHHhccccCCCCCCc
Confidence                     001223567899998  78899877999999999999999999999999999999888843      24  


Q ss_pred             eEecCceEEEcCCCcEEEEcccCCceeeccEEeecCC
Q 026609          200 WVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSNW  236 (236)
Q Consensus       200 ~~~TgD~~~~~~~g~~~~~GR~~d~i~~~G~~i~p~~  236 (236)
                      ||+|||+++++ +|.+++.||+||+||++|+||+|.|
T Consensus       437 ~~~TGDlg~~d-dG~l~~~GR~dd~Ik~~G~~v~p~e  472 (590)
T 3kxw_A          437 YLRTGDLGFLH-ENELYVTGRIKDLIIIYGKNHYPQD  472 (590)
T ss_dssp             BEEEEEEEEEE-TTEEEEEEESSCHHHHHHHTTHHHH
T ss_pred             EEecCcEEEEE-CCEEEEEcCccceEEECCEecCHHH
Confidence            99999999998 9999999999999999999999865

>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}

Probab=100.00  E-value=4.2e-38  Score=271.47  Aligned_cols=220  Identities=18%  Similarity=0.218  Sum_probs=177.1

Q ss_pred             ccCCCCcEEEEecChhhHHhHHHHHHHHhhcCcEEEEcCCCC-HHHHHHHHHhcCceEEEeChHHHHHHHhcCCcCCCCC
Q 026609            8 TAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFD-LEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDL   86 (236)
Q Consensus         8 ~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~-~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l   86 (236)
                      +.....+++++..|++|..++ ..++.++..|+++++.+.+. +..+++.++++++|.+.++|++++.+...    ..++
T Consensus       219 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~~~~~----~~~~  293 (562)
T 3ite_A          219 LELGGVGKFLCLASRAFDVHI-GEMFLAWRFGLCAVTGERLSMLDDLPRTFRELGVTHAGIVPSLLDQTGLV----PEDA  293 (562)
T ss_dssp             GGCTTTCEEECCSCTTSTHHH-HHHHHHHHTTCEEEECCHHHHHHSHHHHHHHTTCCEEEECHHHHHHHTCC----GGGS
T ss_pred             cccCcCceEEEecCchhhhhH-HHHHHHHhcccEEEecchhhCHHHHHHHHHHcCCCEEEcCHHHHhhcccC----cccc
Confidence            456778999999999999888 67788999999999987544 56788999999999999999988876433    3467


Q ss_pred             CCceEEeecCCCCCHHHHHHHHHhCCCCceeeccccccccccccccccCCCCCCCCCCccccCCCcEEEEEeCCCCCCCC
Q 026609           87 SSLKLVGSGAAPLGKELMEECAKNVPSATVIQVGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLP  166 (236)
Q Consensus        87 ~~lr~i~~~G~~~~~~~~~~~~~~~~~~~v~~~~YG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~  166 (236)
                      +++|.++++|+++++++.+.|.+.++ ..+++ .||+||++..+....... ......+|+|+++++++++|++++++++
T Consensus       294 ~~lr~~~~gG~~l~~~~~~~~~~~~~-~~~~~-~YG~TE~~~~~~~~~~~~-~~~~~~~G~p~~~~~~~i~d~~~~~~~~  370 (562)
T 3ite_A          294 PHLVYLGVGGEKMTPRTQQIWSSSDR-VALVN-VYGPTEVTIGCSAGRILP-DSDTRCIGHPLGDSVAHVLAPGSNEHVK  370 (562)
T ss_dssp             TTCCEEEEESSCCCHHHHHHHTTCSS-CEEEE-EECCGGGCSCSEEEECCT-TSCTTEEEEECTTCEEEEECTTSSCBCC
T ss_pred             CceEEEEEecCCCCHHHHHHHhhCCC-cEEEE-eeccchheeeeeeeeecC-CCCCccccccCCCCeEEEEeCCCCCCCC
Confidence            89999999999999999999998775 88888 999999987766543322 3445679999999999999988899999


Q ss_pred             CCCceEEEEecCccchhhcCCcccccccccCCC--eEecCceEEEcCCCcEEEEcccCCceeeccEEeecCC
Q 026609          167 PNQLGEIWLRGPNMMRGYYNNEQATKLTIDKKG--WVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSNW  236 (236)
Q Consensus       167 ~g~~Gel~v~~~~~~~~~~~~~~~~~~~~~~~~--~~~TgD~~~~~~~g~~~~~GR~~d~i~~~G~~i~p~~  236 (236)
                      +|+.|||+|+|+.++.||+++++.+...+ .+|  ||+|||++++|+||++++.||+||+||++|+||+|.|
T Consensus       371 ~g~~GEl~v~g~~v~~GY~~~p~~t~~~~-~~g~~w~~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~v~p~e  441 (562)
T 3ite_A          371 KGMAGELVIEGSLVANGYLNRPDAKGFCD-INGRKMYRTGDIVRMDADSSILFLGRKDEQVKVRGQRLELGE  441 (562)
T ss_dssp             TTSCEEEEEESTTSCCEESSCTTCCSEEE-ETTEEEEEEEEEEEECTTSCEEEEEEC---------------
T ss_pred             CCCceEEEEeccccchhhCCCcccccccc-CCCCEEEecCCEEEEcCCCeEEEEccccCEEeECcEEECHHH
Confidence            99999999999999999999999887665 344  9999999999999999999999999999999999986

>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}

Probab=100.00  E-value=7e-38  Score=291.82  Aligned_cols=227  Identities=19%  Similarity=0.199  Sum_probs=198.7

Q ss_pred             eeeeccCCCCcEEEEecChhhHHhHHHHHHHHhhcCcEEEEcCC---CCHHHHHHHHHhcCceEEEeChHHHHHHHhcCC
Q 026609            4 MDQETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK---FDLEMFLRAIEKHRVTHIWVVPPLILALAKHGL   80 (236)
Q Consensus         4 ~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~---~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~   80 (236)
                      ....++..++|++++.+|+.|..+. ..++.++..|+++++.+.   .++..+.+.++++++|+++++|++++.|.+...
T Consensus       638 ~~~~~~~~~~d~~l~~~~~~fd~~~-~~~~~~l~~G~~l~~~~~~~~~~~~~l~~~i~~~~vt~~~~~p~~~~~l~~~~~  716 (1304)
T 2vsq_A          638 HVDYMAFSDQDTFLSVSNYAFDAFT-FDFYASMLNAARLIIADEHTLLDTERLTDLILQENVNVMFATTALFNLLTDAGE  716 (1304)
T ss_dssp             SCCSSCCCTTCEEEECSCTTSTHHH-HHHHHHHTTTCEEEECCGGGTTCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHCS
T ss_pred             HHHhcCCCCCCEEEEECCccHHHHH-HHHHHHHHcCCEEEECChhhcCCHHHHHHHHHHcCCcEEEccHHHHHHHHhhch
Confidence            3456778899999999999999887 788999999999999874   689999999999999999999999999987532


Q ss_pred             cCCCCCCCceEEeecCCCCCHHHHHHHHHhCCCCceeeccccccccccccccccCCC--CCCCCCCccccCCCcEEEEEe
Q 026609           81 VKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVGYGLTETSGIATMENSFA--GSRNIGSAGALAPGVEALIVS  158 (236)
Q Consensus        81 ~~~~~l~~lr~i~~~G~~~~~~~~~~~~~~~~~~~v~~~~YG~tE~g~~~~~~~~~~--~~~~~~~~g~p~~~~~~~~~~  158 (236)
                         ..++++|.+++|||++++++.+.|.+.++...+++ .||+||++.+++......  .......+|+|++++++.++|
T Consensus       717 ---~~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n-~YG~TE~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d  792 (1304)
T 2vsq_A          717 ---DWMKGLRCILFGGERASVPHVRKALRIMGPGKLIN-CYGPTEGTVFATAHVVHDLPDSISSLPIGKPISNASVYILN  792 (1304)
T ss_dssp             ---HHHHTCSEEEEESSCCCHHHHHHHHHHHCTTCEEE-EECCGGGSSCSEEEECCCCCSSCSSCCCBEECTTEEEEEEC
T ss_pred             ---hcCCCccEEEEecCCCCHHHHHHHHHhCCCCEEEE-eEChhHHhHHheeeeccCccccCCCCCCceeeCCCEEEEEC
Confidence               23578999999999999999999999887678888 999999988776543221  123445799999999999999


Q ss_pred             CCCCCCCCCCCceEEEEecCccchhhcCCccccccccc------CCCeEecCceEEEcCCCcEEEEcccCCceeeccEEe
Q 026609          159 VDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQATKLTID------KKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV  232 (236)
Q Consensus       159 ~~~~~~~~~g~~Gel~v~~~~~~~~~~~~~~~~~~~~~------~~~~~~TgD~~~~~~~g~~~~~GR~~d~i~~~G~~i  232 (236)
                       +.++++|.|+.|||+|+|++++.||+++++.+...|.      .++||+|||++++++||.++|+||+||+||++|++|
T Consensus       793 -~~~~~~p~G~~GEl~i~G~~v~~GY~~~p~~T~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~d~qvki~G~ri  871 (1304)
T 2vsq_A          793 -EQSQLQPFGAVGELCISGMGVSKGYVNRADLTKEKFIENPFKPGETLYRTGDLARWLPDGTIEYAGRIDDQVKIRGHRI  871 (1304)
T ss_dssp             -TTSCBCCTTCCEEEEEEETTCCCCBTTCHHHHHHHEEECTTSTTCEEEEEEEEEEECTTSCEEEEEEGGGEEEETTEEE
T ss_pred             -CCcCCCCCCCceEEEEeccccCccccCCcccchhhhccCCCCCCCeeEecCCeEEEcCCCeEEEEcCCCCEEEECCEee
Confidence             5789999999999999999999999999999988873      245999999999999999999999999999999999


Q ss_pred             ecCC
Q 026609          233 TSNW  236 (236)
Q Consensus       233 ~p~~  236 (236)
                      .|.|
T Consensus       872 e~~e  875 (1304)
T 2vsq_A          872 ELEE  875 (1304)
T ss_dssp             EHHH
T ss_pred             CHHH
Confidence            9865

>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A

Probab=100.00  E-value=1.2e-36  Score=257.73  Aligned_cols=204  Identities=21%  Similarity=0.375  Sum_probs=176.0

Q ss_pred             CcEEEEecChhhHHhHHHHHHHHhhcCcEEEEcCCC----CHHHHHHHHHhcCceEEEeChHHHHHHHhc----CCcCCC
Q 026609           13 DYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKF----DLEMFLRAIEKHRVTHIWVVPPLILALAKH----GLVKKF   84 (236)
Q Consensus        13 ~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~----~~~~~~   84 (236)
                      +|++++.+|++|.+|+...++.+++.|+++++.++.    ++..+++.++++++| +.++|+++..++..    ......
T Consensus       230 ~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~~t-~~~~p~~~~~l~~~~~~~~~~~~~  308 (480)
T 3t5a_A          230 NSALVSWLPFYHDMGLVIGICAPILGGYPAVLTSPVSFLQRPARWMHLMASDFHA-FSAAPNFAFELAARRTTDDDMAGR  308 (480)
T ss_dssp             TEEEEECCCTTSTTHHHHHTHHHHHHTCCEEECCHHHHHHCTHHHHHHTTSSSEE-EEEECHHHHHHHHHHCCTGGGTTC
T ss_pred             CCeEEEeCCCcCccHHHHHHHHHHHcCCceEEECHHHHHHCHHHHHHHHHhhcee-EeeChHHHHHHHHhhcCccccccc
Confidence            899999999999999877889999999999998753    899999999999999 88899988888764    334566


Q ss_pred             CCCCceEEeecCCCCCHHHHHHHHHhCC-----CCceeeccccccccccccccccCCCC---------------------
Q 026609           85 DLSSLKLVGSGAAPLGKELMEECAKNVP-----SATVIQVGYGLTETSGIATMENSFAG---------------------  138 (236)
Q Consensus        85 ~l~~lr~i~~~G~~~~~~~~~~~~~~~~-----~~~v~~~~YG~tE~g~~~~~~~~~~~---------------------  138 (236)
                      +++++|.++++|+++++++.++|.+.++     ...+.+ .||+||++.+++.......                     
T Consensus       309 ~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~~~~~~-~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  387 (480)
T 3t5a_A          309 DLGNILTILSGSERVQAATIKRFADRFARFNLQERVIRP-SYWLAEATVYVATSKPGQPPETVDFDTESLSAGHAKPCAG  387 (480)
T ss_dssp             CCTTCCEEEECCTTCCHHHHHHHHHHSGGGTCCGGGEEE-EEEETTTTEEEEECCTTSSCCEEEECHHHHHTTBCCCCCS
T ss_pred             chhhhheeeecCCcCCHHHHHHHHHHHhhcCCChhhccc-cccccccceeEeecccCCCcceEEecHHHhccCceeecCC
Confidence            7899999999999999999999999984     346888 9999999987765432211                     


Q ss_pred             --CCCCCCccccCCCcEEEEEeCCCCCCCCCCCceEEEEecCccchhhcCCccccccccc-----------CCCeEecCc
Q 026609          139 --SRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQATKLTID-----------KKGWVHTGD  205 (236)
Q Consensus       139 --~~~~~~~g~p~~~~~~~~~~~~~~~~~~~g~~Gel~v~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~TgD  205 (236)
                        ......+|+|++ ++++++|++++++++.|+.|||+|+|+.++.||+++++.+...|.           .++||+|||
T Consensus       388 ~~~~~~~~~G~p~~-~~~~ivd~~~g~~~~~g~~GEl~v~g~~v~~GY~~~pe~t~~~f~~~~~~~~~~~~~~~w~~TGD  466 (480)
T 3t5a_A          388 GGATSLISYMLPRS-PIVRIVDSDTCIECPDGTVGEIWVHGDNVANGYWQKPDESERTFGGKIVTPSPGTPEGPWLRTGD  466 (480)
T ss_dssp             SSCEEEECEECCSS-SEEEEEETTTTEECCTTBCEEEEEESTTSCCCBTTBHHHHHHHHCBCCSSCCTTCCCCCBEEEEE
T ss_pred             CCcceeeecCcccC-CEEEEEcCCCCcCCCCCCEEEEEEeCCccccccccCcchhHHHHhhhhccccCCCCCCCeeeccc
Confidence              122347899999 999999987789999999999999999999999999999988884           467999999


Q ss_pred             eEEEcCCCcEEEEcc
Q 026609          206 LGYFDGDGQLYVVDR  220 (236)
Q Consensus       206 ~~~~~~~g~~~~~GR  220 (236)
                      +|+++ ||+++|+||
T Consensus       467 lg~~d-dG~l~~~GR  480 (480)
T 3t5a_A          467 SGFVT-DGKMFIIGR  480 (480)
T ss_dssp             EEEEE-TTEEEECC-
T ss_pred             eeeEE-CCEEEEeCC
Confidence            99996 999999998

>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*

Probab=100.00  E-value=2e-35  Score=247.42  Aligned_cols=210  Identities=17%  Similarity=0.144  Sum_probs=177.8

Q ss_pred             ccCCCCcEEEEecChhhHHhHHHHHHHHhhcCcEEEEcCCCCHHHHHHHHHhcCceEEEeChHHHHHHHhcCCcCCCC--
Q 026609            8 TAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFD--   85 (236)
Q Consensus         8 ~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~--   85 (236)
                      .+..++|++++.+|+.|..+....++.++..|+++++.+.+++..+++.++++++|+++++|+++..|++.......+  
T Consensus       125 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~  204 (436)
T 3qov_A          125 VGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTVPAAAGNSKRQIKFISDFKTTALHAIPSYAIRLAEVFQEEGIDPR  204 (436)
T ss_dssp             TTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEEECCCSCCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHHHTTCCTT
T ss_pred             cCCCCCCEEEECcccccchhHHHHHHHHHHcCCEEEeCCCCCHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHcCCCcc
Confidence            478899999999999776666577889999999999998889999999999999999999999999998875444433  


Q ss_pred             CCCceEEeecCCCCCHHHHHHHHHhCCCCceeeccccccccccccccccCCCCCCCCCCccccCCCcEEEEEeCCCCCCC
Q 026609           86 LSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPL  165 (236)
Q Consensus        86 l~~lr~i~~~G~~~~~~~~~~~~~~~~~~~v~~~~YG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~  165 (236)
                      ++++|.+++||+++++++.+.|.+.|+ +.+++ .||+||+++.+....+.    .....+.|.+++.++++|+++++++
T Consensus       205 ~~~lr~i~~gGe~l~~~~~~~~~~~~g-~~v~~-~YG~TE~~~~~~~~~~~----~~~g~~~~~~~~~v~i~d~~~g~~~  278 (436)
T 3qov_A          205 ETTLKTLVIGAEPHTDEQRRKIERMLN-VKAYN-SFGMTEMNGPGVAFECQ----EQNGMHFWEDCYLVEIIDPETGEPV  278 (436)
T ss_dssp             SSSCCEEEEESSCCCHHHHHHHHHHHT-SEEEE-EEEEGGGTEEEEEEECT----TCSSEEECTTTEEEEEECTTTCSBC
T ss_pred             cCCccEEEEeCCcCCHHHHHHHHHHhC-ccEEe-cCcchhhcCCeeEEecC----CCCeeEEccCceEEEEEECCCCCCC
Confidence            789999999999999999999999996 88999 99999995442222221    1123667888999999998899999


Q ss_pred             CCCCceEEEEecCccchhhcCCcccccccccCCCeEecCceEEEcCCC------c---EEEEcccCCceeeccEEeecCC
Q 026609          166 PPNQLGEIWLRGPNMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDG------Q---LYVVDRIKELIKYKGFQVTSNW  236 (236)
Q Consensus       166 ~~g~~Gel~v~~~~~~~~~~~~~~~~~~~~~~~~~~~TgD~~~~~~~g------~---~~~~GR~~d~i~~~G~~i~p~~  236 (236)
                      ++|+.|||+|++.+            ...+ ..+||+|||+++++++|      .   +++.||.||+||++|++|+|.|
T Consensus       279 ~~g~~Gel~v~~~~------------~~~~-~~~~y~TGDl~~~~~~gc~cG~~~~~il~i~GR~dd~ik~~G~~v~p~e  345 (436)
T 3qov_A          279 PEGEIGELVLTTLD------------REMM-PLIRYRTRDLTRILPGKCPCGRTHLRIDRIKGRSDDMFIIKGVNIFPMQ  345 (436)
T ss_dssp             STTCCEEEEEEESS------------CCSS-CCCSEEEEEEECEECSCCTTCCCSCEECCCCCBSSSCEEETTEEECHHH
T ss_pred             CCCCceEEEEeccC------------cCCc-eEEEEEcCCEEEEcCCCCCCCCCccccCcccCccCCEEEECCEEECHHH
Confidence            99999999999842            2223 67899999999999998      5   6999999999999999999864

>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*

Probab=100.00  E-value=2.6e-34  Score=240.75  Aligned_cols=209  Identities=19%  Similarity=0.190  Sum_probs=174.2

Q ss_pred             eccCCCCcEEEEecCh-hhHHhHHHHHHHHhhcCcEEEEcCCCCHHHHHHHHHhcCceEEEeChHHHHHHHhcCCcCCCC
Q 026609            7 ETAGELDYVFLCVLPL-FHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFD   85 (236)
Q Consensus         7 ~~~~~~~d~~l~~~p~-~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~   85 (236)
                      .++..++|++++.+|+ +|..++ ..++.++..|+++++.+.+++..+++.++++++|+++++|+++..|++.......+
T Consensus       128 ~~~~~~~d~~~~~~~~~~~~~~~-~~~~~~~~~G~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~  206 (437)
T 2y27_A          128 AAGARRGDKVHVSYGYGLFTGGL-GAHYGAERAGLTVIPFGGGQTEKQVQLIQDFRPDIIMVTPSYMLSIADEIERQGLD  206 (437)
T ss_dssp             HTTCCTTCEEEECSCCSSSHHHH-HHHHHHHHTTCEEECCCSCCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCC
T ss_pred             HcCCCCCCEEEEcccccccccch-HHHHHHHHcCCEEEeCCCCCHHHHHHHHHHhCCCEEEECHHHHHHHHHHHHHcCCC
Confidence            3667889999999998 677777 56788999999999988889999999999999999999999999998765433333


Q ss_pred             --CCCceEEeecCCCCCHHHHHHHHHhCCCCceeecccccccc-cc-ccccccCCCCCCCCCCccccCCCcEEEEEeCCC
Q 026609           86 --LSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVGYGLTET-SG-IATMENSFAGSRNIGSAGALAPGVEALIVSVDT  161 (236)
Q Consensus        86 --l~~lr~i~~~G~~~~~~~~~~~~~~~~~~~v~~~~YG~tE~-g~-~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~  161 (236)
                        ++++|.+++||+++++++.+.+.+.++ ..+++ .||+||+ +. ++..+. .    .....+.|.+++.++++|+++
T Consensus       207 ~~~~~lr~i~~gGe~l~~~~~~~~~~~~g-~~v~~-~YG~TE~~g~~~~~~~~-~----~~~g~~~~~~~~~~~i~d~~~  279 (437)
T 2y27_A          207 PVQSSLRIGIFGAEPWTNDMRVAIEQRMG-IDAVD-IYGLSEVMGPGVASECV-E----TKDGPTIWEDHFYPEIIDPET  279 (437)
T ss_dssp             GGGSSCCEEEEESSCCCHHHHHHHHHHHT-SEEEE-EEEETTTTEEEEEECCT-T----TCSSCEECTTTEEEEEECTTT
T ss_pred             cccCCeeEEEEcCccCCHHHHHHHHHHHC-cCEEe-cCCchhhcCCeeEEecC-C----CCCceeEccCceEEEEEcCCC
Confidence              478999999999999999999999886 88998 9999998 44 333221 1    111256678899999999878


Q ss_pred             CCCCCCCCceEEEEecCccchhhcCCcccccccccCCCeEecCceEEEcC-CCcE-----EEEcccCCceeeccEEeecC
Q 026609          162 QKPLPPNQLGEIWLRGPNMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDG-DGQL-----YVVDRIKELIKYKGFQVTSN  235 (236)
Q Consensus       162 ~~~~~~g~~Gel~v~~~~~~~~~~~~~~~~~~~~~~~~~~~TgD~~~~~~-~g~~-----~~~GR~~d~i~~~G~~i~p~  235 (236)
                      ++++++|+.|||++++.+            ...+ +.+||+|||++++++ +|++     ++.||.||+||++|++|+|.
T Consensus       280 g~~~~~g~~Gel~v~~~t------------~~~~-~~~~y~TGDl~~~~~~~G~~~~~i~~i~GR~~d~i~~~G~~v~p~  346 (437)
T 2y27_A          280 GEVLPDGELGELVFTSLT------------KEAL-PIIRYRTRDLTRLLPGTARTMRRMEKITGRSDDMMIVRGVNVFPT  346 (437)
T ss_dssp             CCBCCTTCCEEEEEEESS------------CSSS-CCCSEEEEEEECEECCSSSSSCEECCCCEEGGGCEEETTEEECHH
T ss_pred             CCCCCCCCccEEEEecCC------------cCCc-hhheeecCCEEEEeCCCCCCccccCccccccCCeEEECCeEECHH
Confidence            999999999999999732            2233 578999999999998 6985     89999999999999999986


Q ss_pred             C
Q 026609          236 W  236 (236)
Q Consensus       236 ~  236 (236)
                      |
T Consensus       347 e  347 (437)
T 2y27_A          347 Q  347 (437)
T ss_dssp             H
T ss_pred             H
Confidence            4

>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}

Probab=100.00  E-value=3.3e-34  Score=240.54  Aligned_cols=210  Identities=21%  Similarity=0.206  Sum_probs=174.0

Q ss_pred             eccCCCCcEEEEecCh-hhHHhHHHHHHHHhhcCcEEEEcCCCCHHHHHHHHHhcCceEEEeChHHHHHHHhcCCcCCCC
Q 026609            7 ETAGELDYVFLCVLPL-FHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFD   85 (236)
Q Consensus         7 ~~~~~~~d~~l~~~p~-~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~   85 (236)
                      .++..++|++++.+|+ +|..++ ...+.++..|+++++.+.+++..+++.++++++|+++++|+++..|++.......+
T Consensus       130 ~~~~~~~d~~l~~~~~~~~~~~~-~~~~~~~~~G~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~  208 (443)
T 2y4o_A          130 AAGGRPGDTLHNAFGYGLFTGGL-GIHYGAERLGCMVVPMSGGQTEKQVQLIRDFEPKIILVTPSYMLNLIDEMVRQGMD  208 (443)
T ss_dssp             HTTCCTTCEEEECSCCSSSHHHH-HHHHHHHHHTCEEECCCSCCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCC
T ss_pred             HcCCCCCCEEEEeccCcccccHH-HHHHHHHHcCCEEEECCCCCHHHHHHHHHHhCCcEEEECHHHHHHHHHHHHHcCCC
Confidence            4677889999999998 566666 56788999999999988889999999999999999999999999998765433333


Q ss_pred             --CCCceEEeecCCCCCHHHHHHHHHhCCCCceeeccccccccccc-cccccCCCCCCCCCCccccCCCcEEEEEeCCCC
Q 026609           86 --LSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVGYGLTETSGI-ATMENSFAGSRNIGSAGALAPGVEALIVSVDTQ  162 (236)
Q Consensus        86 --l~~lr~i~~~G~~~~~~~~~~~~~~~~~~~v~~~~YG~tE~g~~-~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~  162 (236)
                        ++++|.+++||+++++++.+.+.+.++ ..+++ .||+||+++. .+.....    .....+.|.+++.++++|++++
T Consensus       209 ~~~~~lr~i~~gGe~l~~~~~~~~~~~~g-~~v~~-~YG~TE~~g~~~~~~~~~----~~~g~~~~~~~~~~~i~d~~~g  282 (443)
T 2y4o_A          209 PAESSLKIGIFGAEPWTQALRNEVETRVG-IDALD-IYGLSEVMGPGVACECVE----TKDGPVIWEDHFYPEIIDPVTG  282 (443)
T ss_dssp             GGGSSCCEEEEESSCCCHHHHHHHHHHHT-CEEEE-EEEETTTTEEEEEEECTT----TCCSEEECTTTEEEEEECTTTC
T ss_pred             cccCCceEEEECCCcCCHHHHHHHHHHhC-cCEEe-ccCchhhcCCeEEeccCC----CCCceEEccCCeEEEEEcCCCC
Confidence              479999999999999999999999886 88888 9999997432 2222111    1112555778999999998789


Q ss_pred             CCCCCCCceEEEEecCccchhhcCCcccccccccCCCeEecCceEEEcCC-CcE-----EEEcccCCceeeccEEeecCC
Q 026609          163 KPLPPNQLGEIWLRGPNMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGD-GQL-----YVVDRIKELIKYKGFQVTSNW  236 (236)
Q Consensus       163 ~~~~~g~~Gel~v~~~~~~~~~~~~~~~~~~~~~~~~~~~TgD~~~~~~~-g~~-----~~~GR~~d~i~~~G~~i~p~~  236 (236)
                      +++++|+.|||+|++.+            ...+ +.+||+|||+++++++ |.+     ++.||.||+||++|++|+|.|
T Consensus       283 ~~~~~G~~Gel~v~~~t------------~~~~-p~~~y~TGDl~~~~~~cG~~~~~l~~i~GR~~d~i~~~G~~v~p~e  349 (443)
T 2y4o_A          283 EVLPDGSQGELVFTSLT------------KEAM-PVIRYRTRDLTALLPPTARAMRRLAKITGRSDDMLIVRGVNVFPSQ  349 (443)
T ss_dssp             CBCCTTCCEEEEEEESS------------CSSS-CCSSEEEEEEECEECCSSSSSCEECCCCEESSCCEEETTEEECHHH
T ss_pred             CCCCCCCceEEEEeCCC------------cccC-hhheeecCCEEEEcCCCCCCccccCccccccCCeEEECCEEECHHH
Confidence            99999999999999732            2233 5789999999999999 986     899999999999999999864

>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}

Probab=100.00  E-value=1e-33  Score=231.22  Aligned_cols=195  Identities=16%  Similarity=0.195  Sum_probs=163.0

Q ss_pred             eeeccCCCCcEEEEecChhhHHhHHHHHHHHhhcCcEEEEcCCCCHHHHHHHHHhcCceEEEeChHHHHHHHhcCCcCCC
Q 026609            5 DQETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKF   84 (236)
Q Consensus         5 ~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~   84 (236)
                      ...+++.++|++++++|++|.+|+ ..++.++..|+++++.++.  ...++.++++++|++.++|+++..|++... ...
T Consensus        70 ~~~~~~~~~d~~l~~~pl~h~~gl-~~~~~~l~~g~~~~~~~~~--~~~~~~i~~~~~t~~~~~P~~l~~ll~~~~-~~~  145 (358)
T 4gs5_A           70 GKALSLGPGTRALVCLNVGYIAGL-MMLVRGMELDWELTVTEPT--ANPLAGLDHADFDFVAMVPMQLQSILENSA-TSG  145 (358)
T ss_dssp             HHHTTCCTTCEEEECSCTTSHHHH-HHHHHHHHHTCEEEEECCC--SCTTTTCSSCCCSEEEECHHHHHHHHHCTT-TGG
T ss_pred             HHHhCCCCCCEEEEECChHHHHHH-HHHHHHHHhCcEEEecCcc--ccHHHHHHHhCCeEEEcChHHHHHhhcccc-ccc
Confidence            456788999999999999999999 5678888899999887642  123567899999999999999999998765 444


Q ss_pred             CCCCceEEeecCCCCCHHHHHHHHHhCCCCceeeccccccccccccccccCCCCCCCCCCccccCCCcEEEEEeCCCCCC
Q 026609           85 DLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKP  164 (236)
Q Consensus        85 ~l~~lr~i~~~G~~~~~~~~~~~~~~~~~~~v~~~~YG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~  164 (236)
                      +++++|.+++||+++++++.+++++.  +.++++ .||+||++..+......  ....+.++.+.|++.+.+.+      
T Consensus       146 ~l~~lr~v~~gG~~l~~~~~~~~~~~--~~~~~~-~YG~TEt~~~~~~~~~~--~~~~g~~~~~~pgv~~~~~~------  214 (358)
T 4gs5_A          146 QVDRLGKVLLGGAPVNHALAMQISDL--AMPVYQ-SYGMTETVSHVALKALN--GPEASELYVFLPGIQYGVDE------  214 (358)
T ss_dssp             GGGGGCSEEECSSCCCHHHHHHHHTC--SSCEEE-EEECGGGSSEEEEEECS--STTCCSCEEECTTCEEEECT------
T ss_pred             cCCcceEEEEcccCCCchheeccccc--CceEEe-ccccccccceeeccccc--ccccceeeccCCCeEEEecC------
Confidence            78899999999999999999999875  488988 99999998876654433  34467788999999887643      


Q ss_pred             CCCCCceEEEEecCccchhhcCCcccccccccCCCeEecCceEEEcCCCcEEEEcccCCceeeccEEeecCC
Q 026609          165 LPPNQLGEIWLRGPNMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSNW  236 (236)
Q Consensus       165 ~~~g~~Gel~v~~~~~~~~~~~~~~~~~~~~~~~~~~~TgD~~~~~~~g~~~~~GR~~d~i~~~G~~i~p~~  236 (236)
                           .||++++++..                .+|||+|||+++++++| +.++||+||+||++|+||+|.|
T Consensus       215 -----~Gel~~~g~~~----------------~~g~~~TGDlg~~d~~g-~~~~GR~dd~Ik~~G~~v~p~e  264 (358)
T 4gs5_A          215 -----RGCLHISGAVT----------------NGQTVQTNDLVEIHGNA-FQWIGRADNVINSGGVKIVLDQ  264 (358)
T ss_dssp             -----TSEEEEESGGG----------------TTCCEEEEEEEEECSSE-EEEEEEGGGEEEETTEEEEHHH
T ss_pred             -----cCceEEecccc----------------cCcceecCCccccccCc-eEEcccccCeEEECCEEECHHH
Confidence                 48999988632                57899999999999887 7778999999999999999975

>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*

Probab=99.95  E-value=3.2e-27  Score=193.63  Aligned_cols=201  Identities=16%  Similarity=0.164  Sum_probs=152.1

Q ss_pred             eeccCCCCcEEEEecCh-hhHHhHHHHHHHHhhcCcEEEEcCCCCHH-----------------------HHHHHHHhcC
Q 026609            6 QETAGELDYVFLCVLPL-FHVFGLAVITCGQLQKGSCIILMAKFDLE-----------------------MFLRAIEKHR   61 (236)
Q Consensus         6 ~~~~~~~~d~~l~~~p~-~~~~g~~~~~~~~l~~G~~~~~~~~~~~~-----------------------~~~~~i~~~~   61 (236)
                      ...+..++|++++.+|+ +|..|+ ...+.++..|+ +++...+++.                       .+++.+++++
T Consensus       128 ~~~~~~~~d~~l~~~p~g~~~~g~-~~~~~~~~~G~-~v~~~~~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  205 (369)
T 3hgu_A          128 QHRPGRPSGNTLAAIPTGPHIVGA-INKERALRLGG-MFFSIDIDPRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMNQD  205 (369)
T ss_dssp             TTSTTCCCCEEEECSCCTTCHHHH-HHHHHHHHTTS-CEECCCCCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred             HhhCCCCcceEEEecCCCchhhhH-HHHHHHHHcCC-EEECccCChHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhCC
Confidence            34567889999999999 999999 45566688899 6666677777                       8888999999


Q ss_pred             ceEEEeChHHHHHHHhcCCcCCCCCCCceEEeecCCCCCHHHHHHHH-HhCCCCceeeccccccccccccccccCCCCCC
Q 026609           62 VTHIWVVPPLILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECA-KNVPSATVIQVGYGLTETSGIATMENSFAGSR  140 (236)
Q Consensus        62 ~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~~G~~~~~~~~~~~~-~~~~~~~v~~~~YG~tE~g~~~~~~~~~~~~~  140 (236)
                      +|+++++|+++..|++........++++|.+++||+++++++.+.+. +.||+..+++ .||+||++.++..+..     
T Consensus       206 ~t~l~~~Ps~~~~l~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~~p~~~v~~-~YG~TE~~~~~~~~~~-----  279 (369)
T 3hgu_A          206 IRFLVTTPPVLRELLKRPEVVLQMKQSLAQITLGGTELNLDEIKFIASEILPDCEFSA-SYGSTSALGVSRSLLI-----  279 (369)
T ss_dssp             EEEEEECHHHHHHHTTCHHHHHHHHHHCSEEEEESSCCCHHHHHHHHHHTCTTSEEEE-EEEEGGGTEEEEECCB-----
T ss_pred             CCEEEeCHHHHHHHHhhhhhhccccCCeeEEEECCccCCHHHHHHHHHHhCCCcEEEc-ccCchhhhcceecccc-----
Confidence            99999999999999877543334567899999999999999999999 8997689999 9999999876643211     


Q ss_pred             CCCCcccc------CCCcEEEEEeCCCCCCCCCCCceEEEEecCccchhhcCCcccccccccCCCeEecCceEEEcCC--
Q 026609          141 NIGSAGAL------APGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGD--  212 (236)
Q Consensus       141 ~~~~~g~p------~~~~~~~~~~~~~~~~~~~g~~Gel~v~~~~~~~~~~~~~~~~~~~~~~~~~~~TgD~~~~~~~--  212 (236)
                        ..+|+|      .++++++++|+++++++++|+.|||+|++....            .+  -.+|+|||++++.+.  
T Consensus       280 --~~~G~~~~~~~~~~~~~v~ivD~~~g~~vp~G~~GEl~vt~l~~~------------~~--l~ry~tgD~~~~~~~~~  343 (369)
T 3hgu_A          280 --TSESQQVIYDSFSPFITYDVVDSITAQTVEYGERGNVIVTHLSPW------------AF--YPRVAERDTAIRLPGVS  343 (369)
T ss_dssp             --CTTCSSCEEECCTTTEEEEEECTTTCSBCCTTCEEEEEEEEEETT------------EE--EEEEEEEEEEEEECCST
T ss_pred             --ccCCCcccccCCCCCeEEEEECCCCCcCCCCCCceEEEEEEcCcc------------cc--cccccCCceEEEecCCC
Confidence              146777      999999999977899999999999999873211            11  124999999987433  


Q ss_pred             C-------cEEEEcccCCceeeccE
Q 026609          213 G-------QLYVVDRIKELIKYKGF  230 (236)
Q Consensus       213 g-------~~~~~GR~~d~i~~~G~  230 (236)
                      |       .+..++|.++..++.|.
T Consensus       344 g~~~d~~~~v~~~~~~~~~~~i~gv  368 (369)
T 3hgu_A          344 GFAGDRLADIEPLKISEGRKVIEGV  368 (369)
T ss_dssp             TCSSCEEEEEEECC-----------
T ss_pred             CCcCcccccceeccccCCCceeeec
Confidence            3       26677888888888774

>4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A*

Probab=98.61  E-value=4.6e-08  Score=83.49  Aligned_cols=128  Identities=13%  Similarity=0.120  Sum_probs=78.1

Q ss_pred             CCC---ceEEeecCCCCCHHHHHHHHHhCCCCceeeccccccccccccccccCCCCCCCCCCccccCCCcEEEEEeCCCC
Q 026609           86 LSS---LKLVGSGAAPLGKELMEECAKNVPSATVIQVGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQ  162 (236)
Q Consensus        86 l~~---lr~i~~~G~~~~~~~~~~~~~~~~~~~v~~~~YG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~  162 (236)
                      +|.   +..++.||-..   -.+.++..+|+..+....|++||+ .++....+.......+..-.| ...-++.++.+..
T Consensus       296 WPnl~~l~~~~~G~~~~---Y~~~l~~~~g~~p~~~~~Y~ASEg-~~gi~~~p~~~~~~~~~~L~~-~~~ffEFip~~~~  370 (581)
T 4eql_A          296 WPNTKYIETVVTGSMGQ---YVPMLNYYCNDLPLVSTTYGSSET-TFGINLDPLCKPEDVSYTFMP-NMSYFEFIPMDGG  370 (581)
T ss_dssp             STTCCEEEEECSGGGGG---GHHHHHHHHTTCCEECCEEECSSC-EEEECSCTTSCGGGCCEEECT-TSSEEEEEECSTT
T ss_pred             CCCCcEEEEEcCCChHH---HHHHHHHHcCCCccccCccccccc-eeeeccCCCCCcccCceeecC-CcEEEEEEecccc
Confidence            456   55566666322   334444555557777349999995 444332211000111111112 2255566653322


Q ss_pred             --------CCCCCCCceEEEEecCccchhhcCCcccccccccCCCeEecCceEEEcC----CCcEEEEcccCCceeeccE
Q 026609          163 --------KPLPPNQLGEIWLRGPNMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDG----DGQLYVVDRIKELIKYKGF  230 (236)
Q Consensus       163 --------~~~~~g~~Gel~v~~~~~~~~~~~~~~~~~~~~~~~~~~~TgD~~~~~~----~g~~~~~GR~~d~i~~~G~  230 (236)
                              ..+..|+.+||+|++.+   |.|              .|++||+.+...    ..++.|.||.++++++.|+
T Consensus       371 ~~~~~v~l~eVe~G~~YelViTt~~---GL~--------------RYr~GD~v~v~~f~~~~p~i~f~gR~~~~l~~~Ge  433 (581)
T 4eql_A          371 DKNDVVDLEDVKLGCTYEPVVTNFA---GLY--------------RMRVGDIVLVTGFYNNAPQFKFVRRENVVLSIDSD  433 (581)
T ss_dssp             CCSSCEEGGGCCTTCEEEEEEECSS---SCC--------------SEECCEEEEEEEEETTEEEEEEEEETTEEECSSSC
T ss_pred             CCCcEeCHHHcCCCceEEEEEeecc---cee--------------eEEcCCEEEEcccCCCCcEEEEEEecCCEEEeeee
Confidence                    23568999999998752   222              299999998864    4679999999999999999


Q ss_pred             EeecC
Q 026609          231 QVTSN  235 (236)
Q Consensus       231 ~i~p~  235 (236)
                      |++++
T Consensus       434 kl~~~  438 (581)
T 4eql_A          434 KTNEE  438 (581)
T ss_dssp             CEEHH
T ss_pred             ECCHH
Confidence            99875

>4b2g_A GH3-1 auxin conjugating enzyme; signaling protein, ignaling protein, adenylate, amino acid conjugation, plant growth; HET: V1N; 2.40A {Vitis vinifera}

Probab=98.61  E-value=3.4e-08  Score=84.49  Aligned_cols=127  Identities=13%  Similarity=0.086  Sum_probs=77.7

Q ss_pred             CCC---ceEEeecCCCCCHHHHHHHHHhCCCCceeeccccccccccccccccCCCCCCCCCCcc-ccC-CCcEEEEEeCC
Q 026609           86 LSS---LKLVGSGAAPLGKELMEECAKNVPSATVIQVGYGLTETSGIATMENSFAGSRNIGSAG-ALA-PGVEALIVSVD  160 (236)
Q Consensus        86 l~~---lr~i~~~G~~~~~~~~~~~~~~~~~~~v~~~~YG~tE~g~~~~~~~~~~~~~~~~~~g-~p~-~~~~~~~~~~~  160 (236)
                      +|.   +..++.||-..   -.+.++..+++..+....|++||. .++....+.   ..++..+ ..+ ...-++.++.+
T Consensus       301 WPnlk~l~~~~tG~~~~---Y~~~l~~~~g~~p~~~~~Y~ASEg-~~gi~~~p~---~~p~~~~~~L~p~~~ffEFIP~~  373 (609)
T 4b2g_A          301 WPNTKYLDVIVTGAMAQ---YIPTLDYYSGGLPLACTMYASSEC-YFGLNLNPM---SKPSEVSYTIMPNMAYFEFLPHE  373 (609)
T ss_dssp             STTCCEEEEECSGGGGG---GHHHHHHHHTSCCEECCEEECSSC-EEEECSCTT---SCGGGCCEEECTTSCEEEEEEGG
T ss_pred             CCCCcEEEEEccCChHH---HHHHHHHHcCCCccccCcccccce-eeeeecCCC---CCcccCceeecCCcEEEEEEecc
Confidence            556   44555565322   234444555556677449999996 444432211   1111111 111 22455566433


Q ss_pred             CC---------------CCCCCCCceEEEEecCccchhhcCCcccccccccCCCeEecCceEEEcC----CCcEEEEccc
Q 026609          161 TQ---------------KPLPPNQLGEIWLRGPNMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDG----DGQLYVVDRI  221 (236)
Q Consensus       161 ~~---------------~~~~~g~~Gel~v~~~~~~~~~~~~~~~~~~~~~~~~~~~TgD~~~~~~----~g~~~~~GR~  221 (236)
                      +.               ..+..|+.+||+|++..   |+|              .|++||+++...    ..++.|.||.
T Consensus       374 ~~~~~~~~~~~~~~v~l~eVe~G~~YelViTt~~---GL~--------------RYr~GD~v~v~~f~~~~p~i~~~gR~  436 (609)
T 4b2g_A          374 HSSIPLSRDSPPRLVDLAHVEVGKEYELVITTYA---GLY--------------RYRVGDILRVTGFHNSAPQFHFVRRK  436 (609)
T ss_dssp             GTTSCCCSSSCCCCEEGGGCCTTCEEEEEEECTT---SCC--------------SEEEEEEEEEEEEETTEEEEEEEEET
T ss_pred             ccccccccCCCCccccHhHcCCCCeEEEehhhhh---hhh--------------heecCCEEEEeecCCCCcEEEEEEec
Confidence            22               24678999999997642   222              299999998863    4789999999


Q ss_pred             CCceeeccEEeecCC
Q 026609          222 KELIKYKGFQVTSNW  236 (236)
Q Consensus       222 ~d~i~~~G~~i~p~~  236 (236)
                      +++|++.|+||++.|
T Consensus       437 ~~~l~~~Geki~~~~  451 (609)
T 4b2g_A          437 NVLLSIDSDKTDEAE  451 (609)
T ss_dssp             TCCBCSSSCCBCHHH
T ss_pred             CCeEEccccCCCHHH
Confidence            999999999998753

>4epl_A Jasmonic acid-amido synthetase JAR1; ANL adenylating enzyme, acyl acid-amido synthetase, adenylat ligase; HET: JAI; 2.01A {Arabidopsis thaliana}

Probab=98.50  E-value=1.7e-07  Score=79.91  Aligned_cols=128  Identities=16%  Similarity=0.071  Sum_probs=76.2

Q ss_pred             CCCCceE--EeecCCCCCHHHHHHHHHhCCCCceeeccccccccccccccccCCCCCCCCCCc-cccCC-CcEEEEEeCC
Q 026609           85 DLSSLKL--VGSGAAPLGKELMEECAKNVPSATVIQVGYGLTETSGIATMENSFAGSRNIGSA-GALAP-GVEALIVSVD  160 (236)
Q Consensus        85 ~l~~lr~--i~~~G~~~~~~~~~~~~~~~~~~~v~~~~YG~tE~g~~~~~~~~~~~~~~~~~~-g~p~~-~~~~~~~~~~  160 (236)
                      -+|.+|+  ++.+|. + ..-.+.++..+++..+....|++||. .++....+.   ..++.. ...+| ..-++.++.+
T Consensus       300 lWPnl~~i~~~~~G~-~-~~Y~~~l~~~~g~~p~~~~~Y~ASEg-~~gi~~~p~---~~~~~~~~~L~p~~~ffEFiP~~  373 (581)
T 4epl_A          300 LFPNAKYVYGIMTGS-M-EPYVPKLRHYAGDLPLVSHDYGSSEG-WIAANVTPR---LSPEEATFAVIPNLGYFEFLPVS  373 (581)
T ss_dssp             HCTTCCCEEEECSGG-G-GGGHHHHHHHHTTSCEEECCEEETTE-EEEECCCTT---SCTTTCCEEECTTSCEEEEEEC-
T ss_pred             hCCCCceEEEEeCCC-h-HHHHHHHHHHcCCCccccCceeccce-eeeeecCCC---CCccccceeecCCcEEEEEEecc
Confidence            3567753  333442 2 22234455555557777449999996 444432221   111111 11222 2444555422


Q ss_pred             CC----------CCCCCCCceEEEEecCccchhhcCCcccccccccCCCeEecCceEEEcC----CCcEEEEcccCCcee
Q 026609          161 TQ----------KPLPPNQLGEIWLRGPNMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDG----DGQLYVVDRIKELIK  226 (236)
Q Consensus       161 ~~----------~~~~~g~~Gel~v~~~~~~~~~~~~~~~~~~~~~~~~~~~TgD~~~~~~----~g~~~~~GR~~d~i~  226 (236)
                      ..          ..+..|+.+||+|++..   |.|              .|++||+.+...    ..++.|.||.+++++
T Consensus       374 ~~~~~~~~~v~l~eve~G~~YelviTt~~---GL~--------------RYr~GD~v~v~g~~~~~p~~~~~gR~~~~l~  436 (581)
T 4epl_A          374 ETGEGEEKPVGLTQVKIGEEYEVVITNYA---GLY--------------RYRLGDVVKVIGFYNNTPQLKFICRRNLILS  436 (581)
T ss_dssp             ------CCCEEGGGCCTTCEEEEEEESTT---SCS--------------SEEEEEEEEEEEEETTEEEEEEEEETTCCBC
T ss_pred             cccCCCCceeeHHHcCCCCeEEEEEeecc---cee--------------eEEcCCEEEEecccCCCcEEEEEeecCCeEE
Confidence            21          24678999999998753   222              299999998753    257999999999999


Q ss_pred             eccEEeecC
Q 026609          227 YKGFQVTSN  235 (236)
Q Consensus       227 ~~G~~i~p~  235 (236)
                      +.|+++++.
T Consensus       437 ~~Ge~~~~~  445 (581)
T 4epl_A          437 INIDKNTER  445 (581)
T ss_dssp             SSSCCBCHH
T ss_pred             eeeeECCHH
Confidence            999999875

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	236
d1pg4a_	643	e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella en	2e-57
d1ry2a_	640	e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast	2e-46
d1lcia_	541	e.23.1.1 (A:) Luciferase {Firefly (Photinus pyrali	2e-44
d1v25a_	534	e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0	3e-44
d1amua_	514	e.23.1.1 (A:) Phenylalanine activating domain of g	9e-26
d1mdba_	536	e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {B	1e-25
d3cw9a1	503	e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alc	1e-20

>d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]} Length = 643

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Salmonella enterica [TaxId: 28901]

 Score =  191 bits (485), Expect = 2e-57
 Identities = 48/229 (20%), Positives = 89/229 (38%), Gaps = 12/229 (5%)

Query: 15  VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK----FDLEMFLRAIEKHRVTHIWVVPP 70
           ++ C   +  V G + +  G L  G+  ++              + ++KH+V  ++  P 
Sbjct: 296 IYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPT 355

Query: 71  LILALAKHG--LVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATV-IQVGYGLTETS 127
            I AL   G   ++  D SSL+++GS   P+  E  E   K +      +   +  TET 
Sbjct: 356 AIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETG 415

Query: 128 GIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRG--PNMMRGYY 185
           G        A     GSA     GV+  +V  +   P      G + +    P   R  +
Sbjct: 416 GFMITPLPGAIELKAGSATRPFFGVQPALVDNEGH-PQEGATEGNLVITDSWPGQARTLF 474

Query: 186 NNEQATKLTIDK--KGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 232
            + +  + T     K    +GD    D DG  ++  R+ +++   G ++
Sbjct: 475 GDHERFEQTYFSTFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRL 523

>d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 640

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  160 bits (406), Expect = 2e-46
 Identities = 47/231 (20%), Positives = 97/231 (41%), Gaps = 13/231 (5%)

Query: 15  VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKF----DLEMFLRAIEKHRVTHIWVVPP 70
           VF     +  + G   +  G L  G   ++        +   +   I++H+VT  +V P 
Sbjct: 283 VFFTAGDIGWITGHTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPT 342

Query: 71  LILALAKHG--LVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATV-IQVGYGLTETS 127
            +  L + G   ++   L SL+ +GS   P+  E+ E  ++ +    + I   Y  TE+ 
Sbjct: 343 ALRLLKRAGDSYIENHSLKSLRCLGSVGEPIAAEVWEWYSEKIGKNEIPIVDTYWQTESG 402

Query: 128 GIATMENSFAGS-RNIGSAGALAPGVEALIVSVDTQKPLPPNQ-LGEIWLRG--PNMMRG 183
                  +   +    GSA     G++A+++  +T + L  +   G + ++   P+  R 
Sbjct: 403 SHLVTPLAGGVTPMKPGSASFPFFGIDAVVLDPNTGEELNTSHAEGVLAVKAAWPSFART 462

Query: 184 YYNNEQATKLTI--DKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 232
            + N      T      G+  TGD    D DG ++++ R+ +++   G ++
Sbjct: 463 IWKNHDRYLDTYLNPYPGYYFTGDGAAKDKDGYIWILGRVDDVVNVSGHRL 513

>d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]} Length = 541

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Luciferase
species: Firefly (Photinus pyralis) [TaxId: 7054]

 Score =  154 bits (389), Expect = 2e-44
 Identities = 94/218 (43%), Positives = 133/218 (61%), Gaps = 4/218 (1%)

Query: 15  VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILA 74
             L V+P  H FG+   T G L  G  ++LM +F+ E+FLR+++ +++    +VP L   
Sbjct: 233 AILSVVPFHHGFGM-FTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSF 291

Query: 75  LAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVGYGLTETSGIATMEN 134
            AK  L+ K+DLS+L  + SG APL KE+ E  AK      + Q GYGLTET+    +  
Sbjct: 292 FAKSTLIDKYDLSNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQ-GYGLTETTSAILI-- 348

Query: 135 SFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQATKLT 194
           +  G    G+ G + P  EA +V +DT K L  NQ GE+ +RGP +M GY NN +AT   
Sbjct: 349 TPEGDDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQRGELCVRGPMIMSGYVNNPEATNAL 408

Query: 195 IDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 232
           IDK GW+H+GD+ Y+D D   ++VDR+K LIKYKG+QV
Sbjct: 409 IDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQV 446

>d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]} Length = 534

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Long chain fatty acid-CoA ligase TT0168
species: Thermus thermophilus [TaxId: 274]

 Score =  153 bits (387), Expect = 3e-44
 Identities = 59/230 (25%), Positives = 98/230 (42%), Gaps = 13/230 (5%)

Query: 13  DYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLI 72
             V L V+P+FHV    +     L     ++   + D    +   +   VT    VP + 
Sbjct: 212 KDVVLPVVPMFHVNAWCLPYAATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVW 271

Query: 73  LALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVGYGLTETSGIATM 132
           LALA +       L +L+ +  G +   + L+    +       ++ GYGLTETS +   
Sbjct: 272 LALADYLESTGHRLKTLRRLVVGGSAAPRSLIARFERMGVE---VRQGYGLTETSPVVVQ 328

Query: 133 E---------NSFAGSRNIGSAGALAPGVEALIVSVDTQK-PLPPNQLGEIWLRGPNMMR 182
                     +           G   P V   +   + +  P     LGE+ L+GP +  
Sbjct: 329 NFVKSHLESLSEEEKLTLKAKTGLPIPLVRLRVADEEGRPVPKDGKALGEVQLKGPWITG 388

Query: 183 GYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 232
           GYY NE+AT+  +   G+  TGD+  +D +G + + DR+K+LIK  G  +
Sbjct: 389 GYYGNEEATRSALTPDGFFRTGDIAVWDEEGYVEIKDRLKDLIKSGGEWI 438

>d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]} Length = 514

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Phenylalanine activating domain of gramicidin synthetase 1
species: Bacillus brevis [TaxId: 1393]

 Score =  102 bits (254), Expect = 9e-26
 Identities = 39/228 (17%), Positives = 80/228 (35%), Gaps = 22/228 (9%)

Query: 15  VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK--FDLEMFLRAIEKHRVTHIWVVPPLI 72
                  +     +  +    L   S  I++     D   F + I +  +T I + P   
Sbjct: 209 RIGQFASISFDASVWEMFMALLTGASLYIILKDTINDFVKFEQYINQKEITVITLPP--- 265

Query: 73  LALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVGYGLTETSGIATM 132
                   +    + S++ + +  +     L+ +  + V         YG TET+  AT 
Sbjct: 266 ---TYVVHLDPERILSIQTLITAGSATSPSLVNKWKEKVT----YINAYGPTETTICAT- 317

Query: 133 ENSFAGSRNIGSAGALAPGVEALIVSV--DTQKPLPPNQLGEIWLRGPNMMRGYYNNEQA 190
               A    IG +  +   ++   + +  +  +     + GE+ + G  + RGY+   + 
Sbjct: 318 -TWVATKETIGHSVPIGAPIQNTQIYIVDENLQLKSVGEAGELCIGGEGLARGYWKRPEL 376

Query: 191 TKLTI------DKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 232
           T            +    TGD   +  DG +  + RI   +K +G +V
Sbjct: 377 TSQKFVDNPFVPGEKLYKTGDQARWLSDGNIEYLGRIDNQVKIRGHRV 424

>d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]} Length = 536

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Dihydroxybenzoate-AMP ligase DhbE
species: Bacillus subtilis [TaxId: 1423]

 Score =  101 bits (253), Expect = 1e-25
 Identities = 46/200 (23%), Positives = 75/200 (37%), Gaps = 3/200 (1%)

Query: 33  CGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSSLKLV 92
            G L  G  ++L      +     IE+ +VT   +VPPL +        ++ DLSSL+++
Sbjct: 244 LGVLYAGGRVVLSPSPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSRRDDLSSLQVL 303

Query: 93  GSGAAPLGKELMEECAKNVPSATVIQVGYGLTETSGIATMENSFAGSRNIGSAGALAPGV 152
             G A    E                 G        +            + + G      
Sbjct: 304 QVGGAKFSAEAARRVKAVFGCTLQQVFG---MAEGLVNYTRLDDPEEIIVNTQGKPMSPY 360

Query: 153 EALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGD 212
           +   V  D  + + P + G +  RGP  +RGYY  E+    +  + G+  TGD+     D
Sbjct: 361 DESRVWDDHDRDVKPGETGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVRLTRD 420

Query: 213 GQLYVVDRIKELIKYKGFQV 232
           G + V  R K+ I   G +V
Sbjct: 421 GYIVVEGRAKDQINRGGEKV 440

>d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]} Length = 503

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: 4-chlorobenzoyl CoA ligase
species: Alcaligenes sp. [TaxId: 512]

 Score = 87.8 bits (216), Expect = 1e-20
 Identities = 46/220 (20%), Positives = 87/220 (39%), Gaps = 7/220 (3%)

Query: 15  VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILA 74
           V L ++PL+HV G   +    L      +++ +F     L+ +++ +VT ++  P  + A
Sbjct: 198 VVLGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDA 257

Query: 75  LAKHGL--VKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVGYGLTETSGIATM 132
           LA           L SL+ V    A +   ++E   +++P        YG TE      M
Sbjct: 258 LAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHLP--GEKVNIYGTTEAMNSLYM 315

Query: 133 ENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQATK 192
                G+    + G  +      I     +      +   I     +   GY N  QAT 
Sbjct: 316 RQPKTGTE--MAPGFFSEVRIVRIGGGVDEIVANGEEGELIVAASDSAFVGYLNQPQATA 373

Query: 193 LTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 232
             + + GW  T D+  +  +G + ++ R+ ++I   G  +
Sbjct: 374 EKL-QDGWYRTSDVAVWTPEGTVRILGRVDDMIISGGENI 412

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	236
d1pg4a_	643	Acetyl-CoA synthetase {Salmonella enterica [TaxId:	100.0
d1lcia_	541	Luciferase {Firefly (Photinus pyralis) [TaxId: 705	100.0
d1ry2a_	640	Acetyl-CoA synthetase {Baker's yeast (Saccharomyce	100.0
d1v25a_	534	Long chain fatty acid-CoA ligase TT0168 {Thermus t	100.0
d1amua_	514	Phenylalanine activating domain of gramicidin synt	99.97
d1mdba_	536	Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtil	99.97
d3cw9a1	503	4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId	99.95
d1lcia_	541	Luciferase {Firefly (Photinus pyralis) [TaxId: 705	87.4

>d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Salmonella enterica [TaxId: 28901]

Probab=100.00  E-value=3.3e-41  Score=292.61  Aligned_cols=229  Identities=21%  Similarity=0.285  Sum_probs=200.9

Q ss_pred             eeccCCCCcEEEEecChhhHHhHHHHHHHHhhcCcEEEEcCC----CCHHHHHHHHHhcCceEEEeChHHHHHHHhcCCc
Q 026609            6 QETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK----FDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLV   81 (236)
Q Consensus         6 ~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~   81 (236)
                      ..+++.++|++++.+|++|.+|+...++++|+.|+++++.++    +++..+++.++++++|.+.++|++++.|++....
T Consensus       287 ~~~~~~~~d~~~~~~p~~~~~g~~~~l~~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~~~  366 (643)
T d1pg4a_         287 YVFDYHPGDIYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDK  366 (643)
T ss_dssp             HHTTCCTTCEEEECSCTTSHHHHHHTTHHHHHTTCEEEEECSCTTSSSTTHHHHHHHHHTCSEEEECHHHHHHHHTTGGG
T ss_pred             HhhCCCCCCEEEEeCChHHHHHHHHHHHHHHHhCCEEEEecCCCCCCCHHHHHHHHHHHCCcEEEehHHHHHHHHhCcch
Confidence            346788999999999999999997778899999999999763    4789999999999999999999999999887543


Q ss_pred             --CCCCCCCceEEeecCCCCCHHHHHHHHHhCC--CCceeeccccccccccccccccCCCCCCCCCCccccCCCcEEEEE
Q 026609           82 --KKFDLSSLKLVGSGAAPLGKELMEECAKNVP--SATVIQVGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIV  157 (236)
Q Consensus        82 --~~~~l~~lr~i~~~G~~~~~~~~~~~~~~~~--~~~v~~~~YG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~  157 (236)
                        ...++++||.++++|+++++++++++.+.++  ++.+++ .||+||++.++..........+.+.+|+|++|++++++
T Consensus       367 ~~~~~dl~sLr~i~~~G~pl~~~~~~~~~~~~g~~~~~i~~-~yG~TE~g~~~~~~~~~~~~~~~gs~G~p~~g~~v~iv  445 (643)
T d1pg4a_         367 AIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVD-TWWQTETGGFMITPLPGAIELKAGSATRPFFGVQPALV  445 (643)
T ss_dssp             GTTTCCCTTCCEEEEESSCCCHHHHHHHHHHTTTTCSCEEE-EBCCGGGSSCSBCCCTTTCCBCTTCCBSBCTTCCEEEE
T ss_pred             hccccCCCceEEEEEEeCCCCHHHHHHHHHHhCCCCceEEE-eechhhccceEEecCCCccCCCCCccccccCCCEEEEE
Confidence              4557899999999999999999999999986  366888 99999998877654443335567889999999999999


Q ss_pred             eCCCCCCCCCCCceEEEEec--CccchhhcCCcccccccc--cCCCeEecCceEEEcCCCcEEEEcccCCceeeccEEee
Q 026609          158 SVDTQKPLPPNQLGEIWLRG--PNMMRGYYNNEQATKLTI--DKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVT  233 (236)
Q Consensus       158 ~~~~~~~~~~g~~Gel~v~~--~~~~~~~~~~~~~~~~~~--~~~~~~~TgD~~~~~~~g~~~~~GR~~d~i~~~G~~i~  233 (236)
                      | ++|++++.|+.|||+|++  |+++.+|+++++.+...+  ..+|||+|||++++|+||++++.||+||+||++|++|+
T Consensus       446 d-~~g~~~~~g~~Gel~v~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~TGDl~~~d~dG~l~i~GR~dd~ik~~G~ri~  524 (643)
T d1pg4a_         446 D-NEGHPQEGATEGNLVITDSWPGQARTLFGDHERFEQTYFSTFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLG  524 (643)
T ss_dssp             C-TTCCBCCSSEEEEEEECSCCTTCCCEETTCHHHHHHHHHSSSTTSEEEEEEEEECTTSCEEEEEESSSEEEETTEEEE
T ss_pred             C-CCCCCCCCCceEEEEEecCCCcccccccCChhhchhhhcccCCCeEEcCCEEEECCCceEEEecccccEEEECCEEEC
Confidence            9 578999999999999998  568899999988776655  35789999999999999999999999999999999999


Q ss_pred             cCC
Q 026609          234 SNW  236 (236)
Q Consensus       234 p~~  236 (236)
                      |.|
T Consensus       525 p~e  527 (643)
T d1pg4a_         525 TAE  527 (643)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            975

>d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Luciferase
species: Firefly (Photinus pyralis) [TaxId: 7054]

Probab=100.00  E-value=1.3e-37  Score=264.58  Aligned_cols=225  Identities=42%  Similarity=0.682  Sum_probs=198.0

Q ss_pred             ccCCCCcEEEEecChhhHHhHHHHHHHHhhcCcEEEEcCCCCHHHHHHHHHhcCceEEEeChHHHHHHHhcCCcCCCCCC
Q 026609            8 TAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLS   87 (236)
Q Consensus         8 ~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~   87 (236)
                      ....+++++++.+|++|..++ ...+..+..++..+.....+....+..+.++++|.+.++|+.+..+++........++
T Consensus       226 ~~~~~~~~~~~~~p~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~p~~~~~~~~~~~~~~~~~~  304 (541)
T d1lcia_         226 NQIIPDTAILSVVPFHHGFGM-FTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLIDKYDLS  304 (541)
T ss_dssp             CCCCTTCEEEECSCTTSHHHH-HHHHHHHHHTCEEEECSSCCHHHHHHHHHHTTCSEEECCHHHHHHHHHCSCGGGSCCT
T ss_pred             ccccccccccccccccccccc-cccccccccccccccccccccchhHHHHhhhhccccccCccccccccccccccccccc
Confidence            356778999999999999999 6667777888888888888999999999999999999999999999998888888899


Q ss_pred             CceEEeecCCCCCHHHHHHHHHhCCCCceeeccccccccccccccccCCCCCCCCCCccccCCCcEEEEEeCCCCCCCCC
Q 026609           88 SLKLVGSGAAPLGKELMEECAKNVPSATVIQVGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPP  167 (236)
Q Consensus        88 ~lr~i~~~G~~~~~~~~~~~~~~~~~~~v~~~~YG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~  167 (236)
                      ++|.+++||++++++..+++.+.++...+.+ .||+||++..++.....  ....+++|+|+|+++++++|+|++++++.
T Consensus       305 ~l~~v~~gG~~~~~~~~~~~~~~~~~~~~~~-~YG~TE~~~~~~~~~~~--~~~~~svG~p~~~~~~~i~d~d~~~~~~~  381 (541)
T d1lcia_         305 NLHEIASGGAPLSKEVGEAVAKRFHLPGIRQ-GYGLTETTSAILITPEG--DDKPGAVGKVVPFFEAKVVDLDTGKTLGV  381 (541)
T ss_dssp             TCCEEECTTCCCCHHHHHHHHHHTTCSCCBC-EECCGGGSSCSEECCCC-----CCCCBEECTTCEEEEECTTTCCBCCT
T ss_pred             cceEEEecccccccccccccccccCCceeee-cCCccccCceEEecCcc--cCCCCccccccCCCEEEEEECCCCcCCCC
Confidence            9999999999999999999999998666777 99999998877764433  45677899999999999999989999999


Q ss_pred             CCceEEEEecCccchhhcCCcccccccccCCCeEecCceEEEcCCCcEEEEcccCCceeeccEEeecCC
Q 026609          168 NQLGEIWLRGPNMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSNW  236 (236)
Q Consensus       168 g~~Gel~v~~~~~~~~~~~~~~~~~~~~~~~~~~~TgD~~~~~~~g~~~~~GR~~d~i~~~G~~i~p~~  236 (236)
                      |+.|||+|+|+.++.||+++++.+...+..++||+|||+++++++|.+++.||+||+||++|++|+|.|
T Consensus       382 g~~Gel~v~g~~~~~gY~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~  450 (541)
T d1lcia_         382 NQRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAE  450 (541)
T ss_dssp             TCCEEEEEESTTSCSEETTBHHHHHHHBCTTSCEEEEEEEEECTTCCEEEC-----CEEETTEEECHHH
T ss_pred             CCeEEEEEccCccCCeeCCChhhhhhcccCCccccCCCeeEEcCCeEEEEeeeecCEEEECCEEECHHH
Confidence            999999999999999999999888888878999999999999999999999999999999999999864

>d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=8.6e-38  Score=271.22  Aligned_cols=229  Identities=20%  Similarity=0.326  Sum_probs=197.4

Q ss_pred             eccCCCCcEEEEecChhhHHhHHHHHHHHhhcCcEEEEcCC----CCHHHHHHHHHhcCceEEEeChHHHHHHHhcCCc-
Q 026609            7 ETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK----FDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLV-   81 (236)
Q Consensus         7 ~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~-   81 (236)
                      .++..++|++++.+|++|.+|+...+++++..|+++++.+.    +++..+++.++++++|.+.++|++++.|.+.... 
T Consensus       275 ~~~~~~~d~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~  354 (640)
T d1ry2a_         275 TFDTHQEDVFFTAGDIGWITGHTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGDSY  354 (640)
T ss_dssp             HSCCCSSCEEEECSCTTSHHHHHHTTHHHHHHTSEEEEECSCTTSSCTTHHHHHHHHTTCSEEEECHHHHHHHTTSCTTS
T ss_pred             hcCCCcccceeeccchhhhhhHHHHHHHHHHhCCEEEEecCCCCCCCHHHHHHHHHHhCccEEEcChHHHHHHHhccccc
Confidence            45788899999999999999987788899999999988764    3789999999999999999999999999876533 


Q ss_pred             -CCCCCCCceEEeecCCCCCHHHHHHHHHhCCC--CceeeccccccccccccccccCC-CCCCCCCCccccCCCcEEEEE
Q 026609           82 -KKFDLSSLKLVGSGAAPLGKELMEECAKNVPS--ATVIQVGYGLTETSGIATMENSF-AGSRNIGSAGALAPGVEALIV  157 (236)
Q Consensus        82 -~~~~l~~lr~i~~~G~~~~~~~~~~~~~~~~~--~~v~~~~YG~tE~g~~~~~~~~~-~~~~~~~~~g~p~~~~~~~~~  157 (236)
                       ...++++||.++++|++++++++++|.+.++.  ..+++ .||+||++......... ....+++++|+|+++++++++
T Consensus       355 ~~~~~l~sLr~v~~gG~~l~~~~~~~~~~~~g~~~~~i~~-~yg~te~~~~~~~~~~~~~~~~~~gs~G~p~~g~~~~i~  433 (640)
T d1ry2a_         355 IENHSLKSLRCLGSVGEPIAAEVWEWYSEKIGKNEIPIVD-TYWQTESGSHLVTPLAGGVTPMKPGSASFPFFGIDAVVL  433 (640)
T ss_dssp             SSSCCCTTCCEEEECSSCCCHHHHHHHHHTTSCSSSCEEE-CBCCTTTCSCSEECCTTTCCCCCTTCCCEECTTCCEEEE
T ss_pred             cccCCCCceEEEEEecccCcHHHHHHHHHhcCCCcceEEe-eecccccccccccccCCCcCCCCCcccccccCCceEEEE
Confidence             45678999999999999999999999999874  35778 99999998876654332 234567889999999999999


Q ss_pred             eCCCCCCC-CCCCceEEEEec--CccchhhcCCcccccccc--cCCCeEecCceEEEcCCCcEEEEcccCCceeeccEEe
Q 026609          158 SVDTQKPL-PPNQLGEIWLRG--PNMMRGYYNNEQATKLTI--DKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV  232 (236)
Q Consensus       158 ~~~~~~~~-~~g~~Gel~v~~--~~~~~~~~~~~~~~~~~~--~~~~~~~TgD~~~~~~~g~~~~~GR~~d~i~~~G~~i  232 (236)
                      |+++++.+ +.+..|||++++  |+++.+|+++++.+...+  +.+|||+|||++++|++|++++.||+||+||++|++|
T Consensus       434 d~~~~~~~~~~~~~Gel~i~~~~p~~~~gy~~~~e~t~~~~~~~~~gw~~TGDlg~~d~dG~l~i~GR~dd~Ik~~G~~I  513 (640)
T d1ry2a_         434 DPNTGEELNTSHAEGVLAVKAAWPSFARTIWKNHDRYLDTYLNPYPGYYFTGDGAAKDKDGYIWILGRVDDVVNVSGHRL  513 (640)
T ss_dssp             CSSSTTCEECSSCEEEEEESSCCTTSCCEETTCHHHHHHHHTSSSTTSEEEEEEEEECTTCCEEECSCTTSCBCSSSCCB
T ss_pred             eCCCCcccCCCCceEEEEEEecCCCcccccccCHHHHHhhhccCCCCeEEcCCceeECCCCCEEEEEcCCCEEEECCEEE
Confidence            97766654 456679999998  688999999999888776  3458999999999999999999999999999999999


Q ss_pred             ecCC
Q 026609          233 TSNW  236 (236)
Q Consensus       233 ~p~~  236 (236)
                      +|.|
T Consensus       514 ~p~e  517 (640)
T d1ry2a_         514 STAE  517 (640)
T ss_dssp             CHHH
T ss_pred             CHHH
Confidence            9865

>d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Long chain fatty acid-CoA ligase TT0168
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=8.5e-37  Score=259.49  Aligned_cols=226  Identities=29%  Similarity=0.401  Sum_probs=193.2

Q ss_pred             eccCCCCcEEEEecChhhHHhHHHHHHHHhhcCcEEEEcCCCCHHHHHHHHHhcCceEEEeChHHHHHHHhcCCcCCCCC
Q 026609            7 ETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDL   86 (236)
Q Consensus         7 ~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l   86 (236)
                      .+...++|++++.+|++|.+++...+...+..|.++++.+.+++..+++.++++++|.+.++|+++..++.........+
T Consensus       206 ~~~~~~~d~~~~~~p~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~vt~~~~~p~~~~~~~~~~~~~~~~~  285 (534)
T d1v25a_         206 GTALSEKDVVLPVVPMFHVNAWCLPYAATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLESTGHRL  285 (534)
T ss_dssp             TTCCCTTCEEEECSCTTSHHHHTHHHHHHHHTCEEEECTTCCSHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHHTCCC
T ss_pred             ccccccccccccccchhhhccccccceeeeecceeeeccccccccccchhhhhccccccccCchhhhhhhhhhccccccc
Confidence            34567789999999999999996555555554444444557899999999999999999999999999998877777789


Q ss_pred             CCceEEeecCCCCCHHHHHHHHHhCCCCceeeccccccccccccccccCCCCC---------CCCCCccccCCCcEEEEE
Q 026609           87 SSLKLVGSGAAPLGKELMEECAKNVPSATVIQVGYGLTETSGIATMENSFAGS---------RNIGSAGALAPGVEALIV  157 (236)
Q Consensus        87 ~~lr~i~~~G~~~~~~~~~~~~~~~~~~~v~~~~YG~tE~g~~~~~~~~~~~~---------~~~~~~g~p~~~~~~~~~  157 (236)
                      +++|.++++|++++++..+++++.  +..+.+ .||+||++.++.........         ...+.+|+|++|++++++
T Consensus       286 ~~lr~~~~gG~~~~~~~~~~~~~~--~~~i~~-~yG~te~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~g~~~~i~  362 (534)
T d1v25a_         286 KTLRRLVVGGSAAPRSLIARFERM--GVEVRQ-GYGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKTGLPIPLVRLRVA  362 (534)
T ss_dssp             SSCCEEEECSSCCCHHHHHHHHHT--TCEEEE-EEECGGGSSEEEECCCCGGGTTSCHHHHHHHHTSCBEECTTCEEEEE
T ss_pred             cceeEEEEecCCCCHHHHHHHHHh--CCeeee-eccccccccceeecccCccccccCccccccccccceeccCCcEEEEE
Confidence            999999999999999999998866  368888 99999999887764322111         123579999999999999


Q ss_pred             eCCCCCCCCC--CCceEEEEecCccchhhcCCcccccccccCCCeEecCceEEEcCCCcEEEEcccCCceeeccEEeecC
Q 026609          158 SVDTQKPLPP--NQLGEIWLRGPNMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSN  235 (236)
Q Consensus       158 ~~~~~~~~~~--g~~Gel~v~~~~~~~~~~~~~~~~~~~~~~~~~~~TgD~~~~~~~g~~~~~GR~~d~i~~~G~~i~p~  235 (236)
                      | +++++++.  ++.|||+|+|++++.||+++++.+...+..+|||+|||+++++++|.+++.||+||+||++|++|+|.
T Consensus       363 d-~~~~~~~~~~~~~Gel~v~g~~v~~gY~~~~~~t~~~~~~dg~~~TGDlg~~~~~G~l~~~GR~~~~i~~~G~~v~~~  441 (534)
T d1v25a_         363 D-EEGRPVPKDGKALGEVQLKGPWITGGYYGNEEATRSALTPDGFFRTGDIAVWDEEGYVEIKDRLKDLIKSGGEWISSV  441 (534)
T ss_dssp             C-TTSCBCCSSSCCCEEEEEESTTSBSSCBTCHHHHHTTBCTTSCEEEEEEEEECTTCCEEEEEESSCEEEETTEEEEHH
T ss_pred             C-CCCCCCCCCCCeeEEEEEcCCcccceecCChhhhhhhcccCCCCccCceeEECCCccEEEecccccEEEECCEEECHH
Confidence            9 56777765  67899999999999999999999999998999999999999999999999999999999999999986


Q ss_pred             C
Q 026609          236 W  236 (236)
Q Consensus       236 ~  236 (236)
                      |
T Consensus       442 e  442 (534)
T d1v25a_         442 D  442 (534)
T ss_dssp             H
T ss_pred             H
Confidence            4

>d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Phenylalanine activating domain of gramicidin synthetase 1
species: Bacillus brevis [TaxId: 1393]

Probab=99.97  E-value=2.9e-31  Score=224.03  Aligned_cols=219  Identities=19%  Similarity=0.222  Sum_probs=186.0

Q ss_pred             eeccCCCCcEEEEecChhhHHhHHHHHHHHhhcCcEEEEcCC---CCHHHHHHHHHhcCceEEEeChHHHHHHHhcCCcC
Q 026609            6 QETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK---FDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVK   82 (236)
Q Consensus         6 ~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~---~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~   82 (236)
                      .......+|++++.+|++|..++ ..++.++..|+++++.+.   .+....++.+....++.+..+|.....      ..
T Consensus       200 ~~~~~~~~d~~l~~~p~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~  272 (514)
T d1amua_         200 NSLNVTEKDRIGQFASISFDASV-WEMFMALLTGASLYIILKDTINDFVKFEQYINQKEITVITLPPTYVVH------LD  272 (514)
T ss_dssp             HTSCCCTTCEEEECSCTTSTHHH-HHHHHHHTTTCEEEECCHHHHTCHHHHHHHHHHTTCCEEEECHHHHTT------SC
T ss_pred             ccccccccccccceecccccccc-ccccccccccccccccccccccchhhhhhhhhhhhcccccceeeeccc------cc
Confidence            45677888999999999999999 677788888998888763   567888999999999999999976432      24


Q ss_pred             CCCCCCceEEeecCCCCCHHHHHHHHHhCCCCceeeccccccccccccccccCC-CCCCCCCCccccCCCcEEEEEeCCC
Q 026609           83 KFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVGYGLTETSGIATMENSF-AGSRNIGSAGALAPGVEALIVSVDT  161 (236)
Q Consensus        83 ~~~l~~lr~i~~~G~~~~~~~~~~~~~~~~~~~v~~~~YG~tE~g~~~~~~~~~-~~~~~~~~~g~p~~~~~~~~~~~~~  161 (236)
                      ...++++|.++++|+.+++++.+++.+.   ..+++ .||+||++.++...... .........+.+.++..+.+.| ++
T Consensus       273 ~~~~~~l~~~~~~G~~~~~~~~~~~~~~---~~~~~-~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d-~~  347 (514)
T d1amua_         273 PERILSIQTLITAGSATSPSLVNKWKEK---VTYIN-AYGPTETTICATTWVATKETIGHSVPIGAPIQNTQIYIVD-EN  347 (514)
T ss_dssp             TTTCCSCSEEEEESSCCCHHHHHHHTTT---SEEEE-EECCGGGSSCSEEEECCSSCCCSSCCCBEECTTEEEEEEC-TT
T ss_pred             ccccccccEEEEecccCCHHHhhhhccc---eeEEE-eeccccCceeeeeccccccccCcccccccceeeeeEeeec-cc
Confidence            5578899999999999999998877664   67888 99999999887654332 2234456778999999999999 78


Q ss_pred             CCCCCCCCceEEEEecCccchhhcCCcccccccc------cCCCeEecCceEEEcCCCcEEEEcccCCceeeccEEeecC
Q 026609          162 QKPLPPNQLGEIWLRGPNMMRGYYNNEQATKLTI------DKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSN  235 (236)
Q Consensus       162 ~~~~~~g~~Gel~v~~~~~~~~~~~~~~~~~~~~------~~~~~~~TgD~~~~~~~g~~~~~GR~~d~i~~~G~~i~p~  235 (236)
                      +++++.|+.|||+|+++.++.+|++++..+...+      +.++||+|||++++|++|++++.||++|+|+++|+||+|.
T Consensus       348 ~~~~~~g~~GEl~v~~~~~~~gY~~~~~~~~~~~~~~~~~~~~~~~~TGD~g~~d~~G~l~i~GR~~d~i~~~G~~i~p~  427 (514)
T d1amua_         348 LQLKSVGEAGELCIGGEGLARGYWKRPELTSQKFVDNPFVPGEKLYKTGDQARWLSDGNIEYLGRIDNQVKIRGHRVELE  427 (514)
T ss_dssp             SCBCCTTCEEEEEEEETTCCCEETTCHHHHHHHEEECSSSTTSEEEEEEEEEEECTTSCEEEEEEGGGEEEETTEEEEHH
T ss_pred             ceecCCCCeeEEEEccCcccccccccccccceeeEeccccCCCceEEECCEEEECCCCcEEEEecccCEEEECCEEECHH
Confidence            9999999999999999999999999998776655      3478999999999999999999999999999999999986


Q ss_pred             C
Q 026609          236 W  236 (236)
Q Consensus       236 ~  236 (236)
                      |
T Consensus       428 ~  428 (514)
T d1amua_         428 E  428 (514)
T ss_dssp             H
T ss_pred             H
Confidence            4

>d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Dihydroxybenzoate-AMP ligase DhbE
species: Bacillus subtilis [TaxId: 1423]

Probab=99.97  E-value=1.4e-31  Score=226.86  Aligned_cols=229  Identities=24%  Similarity=0.337  Sum_probs=195.5

Q ss_pred             eeeccCCCCcEEEEecChhhHHhHHHHHH-HHhhcCcEEEEcCCCCHHHHHHHHHhcCceEEEeChHHHHHHHhcCCcCC
Q 026609            5 DQETAGELDYVFLCVLPLFHVFGLAVITC-GQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKK   83 (236)
Q Consensus         5 ~~~~~~~~~d~~l~~~p~~~~~g~~~~~~-~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~   83 (236)
                      .+.+...++|++++.+|++|.+++...++ ..+..|++++..+.+++..+++.+++++++.+..+|+.+..+........
T Consensus       215 ~~~~~~~~~d~~l~~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (536)
T d1mdba_         215 VEVCWLDHSTVYLAALPMAHNYPLSSPGVLGVLYAGGRVVLSPSPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSRR  294 (536)
T ss_dssp             HHHHTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEEECSSSSHHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHCC
T ss_pred             ccccccccccccccccccccccceeeccccccccccccccccCCCCHHHHHHHHhhhccccccccchhhhhhhhhccccc
Confidence            34567889999999999999999754444 44455788888888999999999999999999999999999888877777


Q ss_pred             CCCCCceEEeecCCCCCHHHHHHHHHhCCCCceeeccccccccccccccccCCCCCCCCCCccccCCCcEEEEEeCCCCC
Q 026609           84 FDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQK  163 (236)
Q Consensus        84 ~~l~~lr~i~~~G~~~~~~~~~~~~~~~~~~~v~~~~YG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~  163 (236)
                      ..++++|.+++||+++++...+++.+.++ ..... .|+.+|.+......... .....+.+|.|+++....+++.++++
T Consensus       295 ~~~~~~~~~~~gG~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~g~p~~~~~~~~v~~~~g~  371 (536)
T d1mdba_         295 DDLSSLQVLQVGGAKFSAEAARRVKAVFG-CTLQQ-VFGMAEGLVNYTRLDDP-EEIIVNTQGKPMSPYDESRVWDDHDR  371 (536)
T ss_dssp             CCCTTCCEEEEESSCCCHHHHTTHHHHTC-SEEEE-EEECTTSCEEECCTTSC-HHHHHHCCCEESSTTCEEEEECTTSC
T ss_pred             cccCcceeEEEeccccccccccchhhccC-ceeee-ccccccccccccccccc-cccccCCcccCCCCcceEEEEcCCCC
Confidence            78899999999999999999999999998 66777 67777766554433221 13345678999887776776668999


Q ss_pred             CCCCCCceEEEEecCccchhhcCCcccccccccCCCeEecCceEEEcCCCcEEEEcccCCceeeccEEeecCC
Q 026609          164 PLPPNQLGEIWLRGPNMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSNW  236 (236)
Q Consensus       164 ~~~~g~~Gel~v~~~~~~~~~~~~~~~~~~~~~~~~~~~TgD~~~~~~~g~~~~~GR~~d~i~~~G~~i~p~~  236 (236)
                      +++.++.|||+++|+.++.+|++++..+...+..++||+|||++++++||++++.||+||+||++|++|+|+|
T Consensus       372 ~~~~~~~Gel~v~g~~~~~gY~~~~~~~~~~~~~~~~~~tGD~~~~~~dG~l~~~GR~~d~i~~~G~~i~p~~  444 (536)
T d1mdba_         372 DVKPGETGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVRLTRDGYIVVEGRAKDQINRGGEKVAAEE  444 (536)
T ss_dssp             BCCTTCCEEEEEECTTSCSSCTTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEEEGGGCEECSSCEECHHH
T ss_pred             eecccccceeecCCCccccccccccccccccccccCccccCccccccCCCceecCCCcceEEEECCEEECHHH
Confidence            9999999999999999999999999998888888999999999999999999999999999999999999864

>d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: 4-chlorobenzoyl CoA ligase
species: Alcaligenes sp. [TaxId: 512]

Probab=99.95  E-value=2.3e-27  Score=198.58  Aligned_cols=222  Identities=20%  Similarity=0.338  Sum_probs=180.1

Q ss_pred             cCCCCcEEEEecChhhHHhHHHHHHHHhhcCcEEEEcCCCCHHHHHHHHHhcCceEEEeChHHHHHHHhcC--CcCCCCC
Q 026609            9 AGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHG--LVKKFDL   86 (236)
Q Consensus         9 ~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~--~~~~~~l   86 (236)
                      .....++++..+|++|..+.....+.+...++++++.+.+++..++..+..++++....+|+.+..++...  ......+
T Consensus       192 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (503)
T d3cw9a1         192 RHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKL  271 (503)
T ss_dssp             CSSTTCEEEECSCTTSHHHHHTTHHHHHHTTCEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHHHHHTCTTCCC
T ss_pred             cccccccccccCccccccccccccccccccccccccccccChHHhhhhhhhceeeccccccccccccccccccccccccc
Confidence            34556899999999999888778888889999999999999999999999999999999999888776543  2345567


Q ss_pred             CCceEEeecCCCCCHHHHHHHHHhCCCCceeeccccccccccccccccCCCCCCCCCCccccCCCcEEEEEeCCCCCCCC
Q 026609           87 SSLKLVGSGAAPLGKELMEECAKNVPSATVIQVGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLP  166 (236)
Q Consensus        87 ~~lr~i~~~G~~~~~~~~~~~~~~~~~~~v~~~~YG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~  166 (236)
                      +++|.++++|++++++..+++...++ ..+.+ .||.+|++..+......  .......+.+.+.... .+..+.++.++
T Consensus       272 ~~Lr~i~~gG~~~~~~~~~~~~~~~~-~~~~~-~yg~~e~~~~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~~~~  346 (503)
T d3cw9a1         272 DSLRHVTFAGATMPDAVLETVHQHLP-GEKVN-IYGTTEAMNSLYMRQPK--TGTEMAPGFFSEVRIV-RIGGGVDEIVA  346 (503)
T ss_dssp             TTCCEEEECSSCCCHHHHHHHHHHCC-SEEEE-EEEETTTEEEEEEESCS--SSSEEBCCTTCCEEEE-CTTSCTTCBCC
T ss_pred             cceEEEEecccccccccccccccccc-ccccc-cccccccceeeeecccc--ccccccccccccceee-eeecccCcccC
Confidence            89999999999999999999999987 67788 99999998777654433  2222223333333333 33346788999


Q ss_pred             CCCceEEEEec-CccchhhcCCcccccccccCCCeEecCceEEEcCCCcEEEEcccCCceeeccEEeecCC
Q 026609          167 PNQLGEIWLRG-PNMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSNW  236 (236)
Q Consensus       167 ~g~~Gel~v~~-~~~~~~~~~~~~~~~~~~~~~~~~~TgD~~~~~~~g~~~~~GR~~d~i~~~G~~i~p~~  236 (236)
                      .|+.|++.+.+ .....+|+.++..+...+ .+|||+|||++++++||.+++.||+||+||++|++|+|+|
T Consensus       347 ~g~~g~~~~~~~~~~~~~~~~~~~~t~~~~-~~g~~~TgD~g~~~~dG~l~~~GR~~d~ik~~G~~v~~~~  416 (503)
T d3cw9a1         347 NGEEGELIVAASDSAFVGYLNQPQATAEKL-QDGWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSE  416 (503)
T ss_dssp             TTCCEEEEEECCTTSCCCBTTCHHHHHHHE-ETTEEEEEEEEEECTTSCEEEEEESSCCEEETTEEECHHH
T ss_pred             CCccccccccccccccccccCChhhhHHHh-cCCceecccccccccCCeEEeCCCcCCeEEECCEEECHHH
Confidence            99999988775 555667888888887777 7899999999999999999999999999999999999864

>d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Luciferase
species: Firefly (Photinus pyralis) [TaxId: 7054]

Probab=87.40  E-value=0.68  Score=36.76  Aligned_cols=84  Identities=8%  Similarity=0.007  Sum_probs=62.5

Q ss_pred             eccCCCCcEEEEecChhhHHhHHHHHHHHhhcCcEEEEcC-CCCHHHHHHHHHhcCceEEEeChHHHHHHHhcCCcCCCC
Q 026609            7 ETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFD   85 (236)
Q Consensus         7 ~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~   85 (236)
                      ..|++++|++...++-..  -+...+++++..|+..+..+ .++.+.+...++..+++.++.....+..+.+...    .
T Consensus        66 ~~Gi~~Gd~Vai~~~ns~--e~~v~~lA~~~~G~i~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~----~  139 (541)
T d1lcia_          66 RYGLNTNHRIVVCSENSL--QFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKILNVQK----K  139 (541)
T ss_dssp             HHTCCTTCEEEEECSSCS--STHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGHHHHHHHHH----H
T ss_pred             HcCcCCCCEEEEEeCCCH--HHHHHHHHHHHhCeEEEecCCCCCHHHHHHHHHhccceEEeeeccccccchhccc----c
Confidence            357889998888887653  33357789999999999886 5789999999999999999999887776655322    2


Q ss_pred             CCCceEEeecC
Q 026609           86 LSSLKLVGSGA   96 (236)
Q Consensus        86 l~~lr~i~~~G   96 (236)
                      ++.++.++...
T Consensus       140 ~~~~~~~~~~~  150 (541)
T d1lcia_         140 LPIIQKIIIMD  150 (541)
T ss_dssp             CTTCCEEEETT
T ss_pred             ccccceeeeec
Confidence            34455555543