Citrus Sinensis ID: 026621

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230------
Protein Sequence
MVDTSSLGLGWEVYVIFRLFVLDQNKDEFLILQDAMGKERRFHVLKLEWGFDQFIPLEEFNDASNGYLVGDTCVFGAEVLVKERNKCKGECLFLAKLTSASNYKHVWKIENFSKLEAKLYESEVFVAGNQKWKIKLYPKGQGVGRGSHISVYLALADLSTITRDSKIYVHFTLRIRDQVLSKHNEKKASTWLSTSSEDWGWSTFVELSYFNKAENGFLMNDVCIVEAEVLRISKAL
Secondary Structure (PSIPRED)
cccccccccccEEEEEEEEEEEEcccccEEEEEEccccEEEEEccccccccccEEEccEEccccccEEEccEEEEccEEEEEcccccccccEEEcccccccccEEEEEEEEcccccccEEccccEEEcccEEEEEEEccccccccccEEEEEEEEccccccccccEEEEEEEEEEEcccccccEEEEEEEEEccccccccccccccccccccccccEEEccEEEEEEEEEEEEEcc
Secondary Structure Prediction (SSPRO)
cccccccccccEEEEEEEEEEEEcccccEEEEEEccccEEEcccccccccccccccHHHcccccccEEEccEEEEEEEEEEEccccccccccccccccccccccEEEEEEcccHcccccccccEEEEcccEEEEEEEEcccccccccEEEEEEEEccccccccccEEEEEEEEEEEEcccccEEEEEEEEEEccccccccccccEEHHHcccccccEEEccEEEEEEEEEEEEccc
Coil and Loop (DISEMBL)
mvdtsslglgweVYVIFRLFVLDQNKDEFLILQDAMGKERRFHVLKLewgfdqfipleefndasngylvgdtcVFGAEVLVKERNKCKGECLFLAKltsasnykhVWKIENFSKLEAKLYESEVFvagnqkwkiklypkgqgvgrgsHISVYLALADlstitrdskiYVHFTLRIRDQVLSKHNEKKASTWlstssedwgwSTFVELSYFnkaengflmndVCIVEAEVLRISKAL
Flexible Loop (DISEMBL)
mvdtsslglgwEVYVIFRLFVLDQNKDEFLILQDAMGKERRFHVLKLEWGFDQFIPLEEFNDASNGYLVGDTCVFGAEVLVKERNKCKGECLFLakltsasnykhVWKIENFSKLEAKLYESEVFVAGNQKWKIKLYPKGQGVGRGSHISVYLALADLSTITRDSKIYVHFTLRIRDQVLSKHNEKKAstwlstssedwgWSTFVELSYFNKAENGFLMNDVCIVEAEVLRISKAL
Low Complexity Region (SEG)
MVDTSSLGLGWEVYVIFRLFVLDQNKDEFLILQDAMGKERRFHVLKLEWGFDQFIPLEEFNDASNGYLVGDTCVFGAEVLVKERNKCKGECLFLAKLTSASNYKHVWKIENFSKLEAKLYESEVFVAGNQKWKIKLYPKGQGVGRGSHISVYLALADLSTITRDSKIYVHFTLRIRDQVLSKHNEKKASTWLSTSSEDWGWSTFVELSYFNKAENGFLMNDVCIVEAEVLRISKAL
Disordered region (IsUnstruct)
******LGLGWEVYVIFRLFVLDQNKDEFLILQDAMGKERRFHVLKLEWGFDQFIPLEEFNDASNGYLVGDTCVFGAEVLVKERNKCKGECLFLAKLTSASNYKHVWKIENFSKLEAKLYESEVFVAGNQKWKIKLYPKGQGVGRGSHISVYLALADLSTITRDSKIYVHFTLRIRDQVLSKHNEKKASTWLSTSSEDWGWSTFVELSYFNKAENGFLMNDVCIVEAEVLRI****
Disordered Region (DISOPRED)
*VDTSSLGLGWEVYVIFRLFVLDQNKDEFLILQDAMGKERRFHVLKLEWGFDQFIPLEEFNDASNGYLVGDTCVFGAEVLVKERNKCKGECLFLAKLTSASNYKHVWKIENFSKLEAKLYESEVFVAGNQKWKIKLYPKGQGVGRGSHISVYLALADLSTITRDSKIYVHFTLRIRDQVLSKHNEKKASTWLSTSSEDWGWSTFVELSYFNKAENGFLMNDVCIVEAEVLRISKAL
Disordered Region (DISEMBL)
MVDTSSLGLGWEVYVIFRLFVLDQNKDEFLILQDAMGKERRFHVLKLEWGFDQFIPLEEFNDASNGYLVGDTCVFGAEVLVKERNKCKGECLFLAKLTSASNYKHVWKIENFSKLEAKLYESEVFVAGNQKWKIKLYPKGQGVGRGSHISVYLALADLSTITRDSKIYVHFTLRIRDQVLS**************SEDWGWSTFVELSYFNKAENGFLMNDVCIVEAEVLRISKAL
Disordered Region (DISPRO)
*****SLGLGWEVYVIFRLFVLDQNKDEFLILQDAMGKERRFHVLKLEWGFDQFIPLEEFNDASNGYLVGDTCVFGAEVLVKERNKC********KLTSASNYKHVWKIENFSKLEAKLYESEVFVAGNQKWKIKLYPKGQGVGRGSHISVYLALADLSTITRDSKIYVHFTLRIRDQVLSKHNEKKASTWLSTSSEDWGWSTFVELSYFNKAENGFLMNDVCIVEAEVLRISKA*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVDTSSLGLGWEVYVIFRLFVLDQNKDEFLILQDAMGKERRFHVLKLEWGFDQFIPLEEFNDASNGYLVGDTCVFGAEVLVKERNKCKGECLFLAKLTSASNYKHVWKIENFSKLEAKLYESEVFVAGNQKWKIKLYPKGQGVGRGSHISVYLALADLSTITRDSKIYVHFTLRIRDQVLSKHNEKKASTWLSTSSEDWGWSTFVELSYFNKAENGFLMNDVCIVEAEVLRISKAL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	236	2.2.26 [Sep-21-2011]
Q9FPT1	1116	Ubiquitin carboxyl-termin	no	no	0.521	0.110	0.346	6e-17
Q84WU2	1115	Ubiquitin carboxyl-termin	no	no	0.542	0.114	0.333	2e-16
Q8RY18	1055	MATH domain-containing pr	no	no	0.504	0.112	0.310	9e-11
Q8T126	1304	Probable inactive serine/	no	no	0.724	0.131	0.242	2e-07
Q86AY4	449	TNF receptor-associated f	no	no	0.474	0.249	0.307	4e-06
Q54FG0	460	TNF receptor-associated f	no	no	0.491	0.252	0.296	0.0002
P11467	460	RING finger protein DG17	no	no	0.491	0.252	0.312	0.0003
Q54C11	437	TNF receptor-associated f	no	no	0.419	0.226	0.272	0.0004
Q86KX6	595	TNF receptor-associated f	no	no	0.546	0.216	0.292	0.0004

>sp|Q9FPT1|UBP12_ARATH Ubiquitin carboxyl-terminal hydrolase 12 OS=Arabidopsis thaliana GN=UBP12 PE=1 SV=2

 Score = 87.8 bits (216), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 44/127 (34%), Positives = 75/127 (59%), Gaps = 4/127 (3%)

Query: 104 KHVWKIENFSKLEAKLYESEVFVAGNQKWKIKLYPKGQGVGRGSHISVYLALADLSTITR 163
           K  W I NFS+   + + S+VFV G  KW+I ++PKG  V    H+S+YL ++D +++  
Sbjct: 56  KFTWTIPNFSRQNTRKHYSDVFVVGGYKWRILIFPKGNNV---DHLSMYLDVSDAASLPY 112

Query: 164 DSKIYVHFTLRIRDQVLSKHNEKKASTWLSTSSE-DWGWSTFVELSYFNKAENGFLMNDV 222
               Y  F+L + +Q+ +++  +K +     + E DWG+++F+ LS       G+L+ND 
Sbjct: 113 GWSRYAQFSLAVVNQIHTRYTVRKETQHQFNARESDWGFTSFMPLSELYDPSRGYLVNDT 172

Query: 223 CIVEAEV 229
            +VEAEV
Sbjct: 173 VLVEAEV 179

Recognizes and hydrolyzes the peptide bond at the C-terminal Gly of ubiquitin. Involved in the processing of poly-ubiquitin precursors as well as that of ubiquitinated proteins.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 4EC: .EC: 1EC: 9EC: .EC: 1EC: 2

>sp|Q84WU2|UBP13_ARATH Ubiquitin carboxyl-terminal hydrolase 13 OS=Arabidopsis thaliana GN=UBP13 PE=1 SV=1

 Score = 85.9 bits (211), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 44/132 (33%), Positives = 77/132 (58%), Gaps = 4/132 (3%)

Query: 99  SASNYKHVWKIENFSKLEAKLYESEVFVAGNQKWKIKLYPKGQGVGRGSHISVYLALADL 158
              + K  W I  F++L  + + S+VFV G  KW+I ++PKG  V    H+S+YL +AD 
Sbjct: 50  DPPSLKFTWTIPMFTRLNTRKHYSDVFVVGGYKWRILIFPKGNNV---DHLSMYLDVADA 106

Query: 159 STITRDSKIYVHFTLRIRDQVLSKHNEKKASTWLSTSSE-DWGWSTFVELSYFNKAENGF 217
           + +      Y  F+L + +QV ++++ +K +     + E DWG+++F+ LS   +   G+
Sbjct: 107 ANLPYGWSRYSQFSLAVVNQVNNRYSIRKETQHQFNARESDWGFTSFMPLSELYEPTRGY 166

Query: 218 LMNDVCIVEAEV 229
           L+ND  ++EAEV
Sbjct: 167 LVNDTVLIEAEV 178

Recognizes and hydrolyzes the peptide bond at the C-terminal Gly of ubiquitin. Involved in the processing of poly-ubiquitin precursors as well as that of ubiquitinated proteins.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 1

EC: 2

>sp|Q8RY18|Y5436_ARATH MATH domain-containing protein At5g43560 OS=Arabidopsis thaliana GN=At5g43560 PE=1 SV=1

 Score = 67.4 bits (163), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 40/129 (31%), Positives = 66/129 (51%), Gaps = 10/129 (7%)

Query: 104 KHVWKIENFSKLEAKLYESEVFVAGNQKWKIKLYPKGQGVGRGSHISVYLALADLSTITR 163
           K+ W IE FS +  +    +VF  G  KW I +YP+G  V   +H+S++L +A    +  
Sbjct: 70  KNTWTIEKFSDINKRELRGDVFEVGGYKWYILIYPQGCDV--CNHLSLFLCVAHHEKLLP 127

Query: 164 DSKIYVHFTLRI--RDQVLSKHNEKKASTWLSTSSEDWGWSTFVELSYFNKAENGFLMND 221
               +  FT+ +  +D   SKH++     W      DWGW  F+EL    K + GF+ + 
Sbjct: 128 GWSHFAQFTIAVSNKDPKKSKHSDTLHRFW--KKEHDWGWKKFIELP---KLKEGFIDDS 182

Query: 222 VCI-VEAEV 229
            C+ ++A+V
Sbjct: 183 GCLTIKAQV 191

Arabidopsis thaliana (taxid: 3702)

>sp|Q8T126|FNKC_DICDI Probable inactive serine/threonine-protein kinase fnkC OS=Dictyostelium discoideum GN=fnkC PE=3 SV=1

 Score = 56.2 bits (134), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 48/198 (24%), Positives = 92/198 (46%), Gaps = 27/198 (13%)

Query: 42   FHVLKLEWGFDQFIPLEEFNDASNGYLVGDTCVFGAEVLVKERNKCKGECLFLA---KLT 98
            F + +   G+  FI L    + +NG+LV +T        +K R         +    K  
Sbjct: 1117 FSIKEFNHGYGSFIGLFSLLNPNNGFLVNNT--------IKVRIDAAPTSPLVNTYDKYN 1168

Query: 99   SASNYKHVWKIENFSKLEAKLYESEVFVAGNQKWKIKLYPKGQGVGRGSHISVYLALADL 158
               N    + +   SK +++ + S +F++  +KW IK+YP GQ     +++SV+L   D 
Sbjct: 1169 IGLNQAFSYSVPMMSK-KSEPFISPIFMSCGRKWIIKIYPMGQP--SSNYMSVFLEYRD- 1224

Query: 159  STITRDSKIYVHFTLRIRDQVLSKHNEKKASTWL----STSSEDWGWSTFVELSYFNKAE 214
                 + +  VHF+L +  Q+   + E+    W+    ++ S  +G+  F+ +S     +
Sbjct: 1225 -----EGEENVHFSLELISQL---YPEQSIKYWVQYRFNSKSNSFGYPKFIGVSTLMDPD 1276

Query: 215  NGFLMNDVCIVEAEVLRI 232
             GFL+ND  I+   +L++
Sbjct: 1277 MGFLVNDTIILNVSILQL 1294

Dictyostelium discoideum (taxid: 44689)

>sp|Q86AY4|Y2340_DICDI TNF receptor-associated factor family protein DDB_G0272340 OS=Dictyostelium discoideum GN=DDB_G0272340 PE=3 SV=2

 Score = 52.0 bits (123), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 39/127 (30%), Positives = 66/127 (51%), Gaps = 15/127 (11%)

Query: 102 NYKHVWKIENFSK-----LEAKLYESEVFVAGNQKWKIKLYPKGQGVGRGSH--ISVYLA 154
           NY++ W I N+S+      + K  ES  F+ GN K+KI+ YP G G+   S   +S+YL 
Sbjct: 311 NYQNKWVITNWSQKLQDYPKPKSIESPEFMVGNLKFKIQFYPNG-GLSDESKDFLSIYLY 369

Query: 155 LADLSTITRDSKIYVHFTLRIRDQVLSKHNEKKASTWLSTSSEDWGWSTFVELSYFNKAE 214
             D  T ++     V F+  + ++  ++ N K AST +  +   WGW +F+  S     +
Sbjct: 370 KFDDQTPSK-----VQFSFELLNKDFTR-NRKLASTNIFHTENKWGWRSFINNSLVT-TQ 422

Query: 215 NGFLMND 221
            GF++ +
Sbjct: 423 TGFVIQN 429

Probable adapter protein and signal transducer that links members of the tumor necrosis factor receptor family to different signaling pathways by association with the receptor cytoplasmic domain and kinases.

Dictyostelium discoideum (taxid: 44689)

>sp|Q54FG0|Y0883_DICDI TNF receptor-associated factor family protein DDB_G0290883 OS=Dictyostelium discoideum GN=DDB_G0290883 PE=3 SV=1

 Score = 46.6 bits (109), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/128 (29%), Positives = 64/128 (50%), Gaps = 12/128 (9%)

Query: 100 ASNYKHVWKIENFS-----KLEAKLYESEVFVAGNQKWKIKLYPKGQGVGRGSHISVYLA 154
           ++ Y++ W I N+S     KL  K   S + +  +  +++ +YPKG       +IS+YL 
Sbjct: 318 SNGYRNKWIISNYSSLAKSKLNCKSLSSPILLILSHHFQVCVYPKGDE--NKEYISLYLR 375

Query: 155 LADLSTITRDSKIYVHFTL-RIRDQVLSKHNEKKASTWLSTSSEDWGWSTFVELSYFNKA 213
           + ++       K+   FTL  + D+  SK   K+    +  S ++WGW  F+     NK 
Sbjct: 376 VNNIEE-PNSLKVEYSFTLVNVLDK--SKSITKRVDKIVFISPKEWGWGKFLLSDLINK- 431

Query: 214 ENGFLMND 221
           ENG+L ND
Sbjct: 432 ENGWLSND 439

Probable adapter protein and signal transducer that links members of the tumor necrosis factor receptor family to different signaling pathways by association with the receptor cytoplasmic domain and kinases.

Dictyostelium discoideum (taxid: 44689)

>sp|P11467|DG17_DICDI RING finger protein DG17 OS=Dictyostelium discoideum GN=zfaA PE=2 SV=2

 Score = 45.4 bits (106), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 40/128 (31%), Positives = 63/128 (49%), Gaps = 12/128 (9%)

Query: 100 ASNYKHVWKIENFS-----KLEAKLYESEVFVAGNQKWKIKLYPKGQGVGRGSHISVYLA 154
           ++ Y++ W I N+S     KL  +   S +    +  +++ +YPKG       +IS+YL 
Sbjct: 318 SNGYRNKWIISNYSSVAKSKLNCQALSSPMLSILSHLFQVCVYPKGDE--NKEYISLYLR 375

Query: 155 LADLSTITRDSKIYVHFTL-RIRDQVLSKHNEKKASTWLSTSSEDWGWSTFVELSYFNKA 213
           + ++       K+   FTL  + D+  SK   KK    +  SSE WGW  F+     NK 
Sbjct: 376 VNNIEE-PNSLKVEYSFTLVNVLDK--SKSITKKEDKKVFISSEGWGWGKFLLSDLINK- 431

Query: 214 ENGFLMND 221
           ENG+L ND
Sbjct: 432 ENGWLSND 439

Probable adapter protein and signal transducer that links members of the tumor necrosis factor receptor family to different signaling pathways by association with the receptor cytoplasmic domain and kinases.

Dictyostelium discoideum (taxid: 44689)

>sp|Q54C11|Y3202_DICDI TNF receptor-associated factor family protein DDB_G0293202 OS=Dictyostelium discoideum GN=DDB_G0293202 PE=2 SV=1

 Score = 45.4 bits (106), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 30/110 (27%), Positives = 53/110 (48%), Gaps = 11/110 (10%)

Query: 97  LTSASNYKHVWKIENFSKLEAK---LYESEVFVAGNQKWKIKLYPKGQGVGRGSHISVYL 153
           ++    +K VW I+NFSK + +    + S V   G+  + + LYP G+     S +S+YL
Sbjct: 298 ISKQEKFKSVWDIKNFSKRQFQKGFYFSSPVITVGHHSFHLWLYPNGETSPSNS-LSLYL 356

Query: 154 ALADLSTITRDSKIYVHFTLRIRDQVLSKHNEK-KASTWLSTSSEDWGWS 202
            L      T+  K +V+F++ I++   +  N   +    L      WGW+
Sbjct: 357 VL------TKGEKTFVNFSISIKNHNGNDLNSTFENDKCLEVGGTRWGWA 400

Probable adapter protein and signal transducer that links members of the tumor necrosis factor receptor family to different signaling pathways by association with the receptor cytoplasmic domain and kinases.

Dictyostelium discoideum (taxid: 44689)

>sp|Q86KX6|Y2348_DICDI TNF receptor-associated factor family protein DDB_G0272348 OS=Dictyostelium discoideum GN=DDB_G0272348 PE=3 SV=2

 Score = 45.1 bits (105), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 41/140 (29%), Positives = 65/140 (46%), Gaps = 11/140 (7%)

Query: 103 YKHVWKIENFSKLE----AKLY-ESEVFVAGNQKWKIKLYPKGQGVGRGSHISVYLALAD 157
           YK+ W I N+S+ E    +K Y +S +F  GN  + +K +P G+       I +Y    D
Sbjct: 457 YKNKWVISNYSEQEQQGISKDYIKSPLFKIGNSTFFLKWFPFGKKKLNYCSIFLYKTQDD 516

Query: 158 LSTITRDSKIYVHF-TLRIRDQVLSKHNEKKASTWLSTSSEDWGWSTFVELSYFNKAENG 216
            S I      Y+H    +I D+V  K   +K  +     S  +G S F++ +      NG
Sbjct: 517 KSIIVN---YYIHLVNNQISDEVYEKRGCQKYDS--ENGSAGYGSSQFIKRADLLNDANG 571

Query: 217 FLMNDVCIVEAEVLRISKAL 236
           FL+ND   +E E+    + L
Sbjct: 572 FLINDSITIEIEIFATEEIL 591

Probable adapter protein and signal transducer that links members of the tumor necrosis factor receptor family to different signaling pathways by association with the receptor cytoplasmic domain and kinases.

Dictyostelium discoideum (taxid: 44689)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	236
297830352	309	hypothetical protein ARALYDRAFT_479214 [	0.949	0.724	0.539	3e-68
21537273	309	unknown [Arabidopsis thaliana]	0.949	0.724	0.539	1e-67
18401489	309	TRAF-like family protein [Arabidopsis th	0.911	0.695	0.547	1e-65
11994555	304	unnamed protein product [Arabidopsis tha	0.911	0.707	0.547	2e-65
255556544	455	nucleic acid binding protein, putative [	0.949	0.492	0.552	3e-64
449441502	316	PREDICTED: BTB/POZ and MATH domain-conta	0.987	0.737	0.523	3e-63
449522688	316	PREDICTED: BTB/POZ and MATH domain-conta	0.987	0.737	0.523	4e-63
356519881	310	PREDICTED: uncharacterized protein LOC10	0.957	0.729	0.532	2e-61
357479139	311	Ubiquitin carboxyl-terminal hydrolase [M	0.953	0.723	0.513	2e-58
224100507	249	predicted protein [Populus trichocarpa]	0.957	0.907	0.497	5e-56

>gi|297830352|ref|XP_002883058.1| hypothetical protein ARALYDRAFT_479214 [Arabidopsis lyrata subsp. lyrata] gi|297328898|gb|EFH59317.1| hypothetical protein ARALYDRAFT_479214 [Arabidopsis lyrata subsp. lyrata]

 Score =  264 bits (674), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 124/230 (53%), Positives = 165/230 (71%), Gaps = 6/230 (2%)

Query: 1   MVDTSSLGLGWEVYVIFRLFVLDQNKDEFLILQDAMGKERRFHVLKLEWGFDQFIPLEEF 60
           + D+SSL  GWEVY +FRL++LDQNKD +LILQ   G ERRFH +K EWGFD+FIP   F
Sbjct: 76  LADSSSLSPGWEVYAVFRLYLLDQNKDNYLILQ---GNERRFHAVKREWGFDKFIPTGTF 132

Query: 61  NDASNGYLVGDTCVFGAEVLV-KERNKCKGECLFLAKLTSASNYKHVWKIENFSKLEAKL 119
           +DASNGYL+ DTC+FGA+V V KER   +GECL + K   A++ KHVWKIENFSKL+ + 
Sbjct: 133 SDASNGYLMEDTCMFGADVFVSKERRSGRGECLSMIK--DATSSKHVWKIENFSKLDKES 190

Query: 120 YESEVFVAGNQKWKIKLYPKGQGVGRGSHISVYLALADLSTITRDSKIYVHFTLRIRDQV 179
           Y+S  F AG++KWK++ YP G   G G+H+S+YL L D  TI+  +KI+V FT+RI DQ+
Sbjct: 191 YDSNAFFAGDRKWKVRFYPTGTKQGTGTHLSIYLTLVDPETISDGTKIFVEFTIRIFDQL 250

Query: 180 LSKHNEKKASTWLSTSSEDWGWSTFVELSYFNKAENGFLMNDVCIVEAEV 229
             +H   K + W S SS + GW  +V + YF +  +G L+ DVC+VEA+V
Sbjct: 251 QGRHIAGKVTKWFSRSSSEHGWVKYVSMVYFTQPNSGLLLKDVCLVEADV 300

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21537273|gb|AAM61614.1| unknown [Arabidopsis thaliana]

 Score =  261 bits (668), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 124/230 (53%), Positives = 165/230 (71%), Gaps = 6/230 (2%)

Query: 1   MVDTSSLGLGWEVYVIFRLFVLDQNKDEFLILQDAMGKERRFHVLKLEWGFDQFIPLEEF 60
           + D+SSL  GWEVY +FRL++LDQNKD +LILQ   G ERRFH +K EWGFD+FIP   F
Sbjct: 76  LADSSSLSPGWEVYAVFRLYLLDQNKDNYLILQ---GNERRFHSVKREWGFDKFIPTGTF 132

Query: 61  NDASNGYLVGDTCVFGAEVLV-KERNKCKGECLFLAKLTSASNYKHVWKIENFSKLEAKL 119
           +D+SNGYL+ DTC+FGA+V V KER   +GECL + K   A++ KHVWKIENFSKL+ + 
Sbjct: 133 SDSSNGYLMEDTCMFGADVFVSKERRSGRGECLSMIK--DATSSKHVWKIENFSKLDKES 190

Query: 120 YESEVFVAGNQKWKIKLYPKGQGVGRGSHISVYLALADLSTITRDSKIYVHFTLRIRDQV 179
           Y+S  F AG++KWKI+ YP G   G G+H+S+YL L D  TI+  +KI+V FT+RI DQ+
Sbjct: 191 YDSNAFFAGDRKWKIEFYPTGTKQGTGTHLSIYLTLVDPETISDGTKIFVEFTIRIFDQL 250

Query: 180 LSKHNEKKASTWLSTSSEDWGWSTFVELSYFNKAENGFLMNDVCIVEAEV 229
             +H   K + W S SS + GW  +V + YF +  +G L+ DVC+VEA+V
Sbjct: 251 QGRHIAGKVTKWFSRSSSEHGWVKYVSMVYFTQPNSGLLLKDVCLVEADV 300

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18401489|ref|NP_566576.1| TRAF-like family protein [Arabidopsis thaliana] gi|332642426|gb|AEE75947.1| TRAF-like family protein [Arabidopsis thaliana]

 Score =  255 bits (651), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 121/221 (54%), Positives = 159/221 (71%), Gaps = 6/221 (2%)

Query: 10  GWEVYVIFRLFVLDQNKDEFLILQDAMGKERRFHVLKLEWGFDQFIPLEEFNDASNGYLV 69
           GWEVY +FRL++LDQNKD +LILQ   G ERRFH +K EWGFD+FIP   F+DASNGYL+
Sbjct: 85  GWEVYAVFRLYLLDQNKDNYLILQ---GNERRFHSVKREWGFDKFIPTGTFSDASNGYLM 141

Query: 70  GDTCVFGAEVLV-KERNKCKGECLFLAKLTSASNYKHVWKIENFSKLEAKLYESEVFVAG 128
            DTC+FGA+V V KER   +GECL + K   A++ KHVWKIENFSKL+ + Y+S  F AG
Sbjct: 142 EDTCMFGADVFVSKERRSGRGECLSMIK--DATSSKHVWKIENFSKLDKESYDSNAFFAG 199

Query: 129 NQKWKIKLYPKGQGVGRGSHISVYLALADLSTITRDSKIYVHFTLRIRDQVLSKHNEKKA 188
           ++KWKI+ YP G   G G+H+S+YL L D  TI+  +KI+V FT+RI DQ+  +H   K 
Sbjct: 200 DRKWKIEFYPTGTKQGTGTHLSIYLTLVDPETISDGTKIFVEFTIRIFDQLQGRHIAGKV 259

Query: 189 STWLSTSSEDWGWSTFVELSYFNKAENGFLMNDVCIVEAEV 229
           + W S SS + GW  +V + YF +  +G L+ DVC+VEA+V
Sbjct: 260 TKWFSRSSSEHGWVKYVSMVYFTQPNSGLLLKDVCLVEADV 300

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|11994555|dbj|BAB02742.1| unnamed protein product [Arabidopsis thaliana]

 Score =  254 bits (650), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 121/221 (54%), Positives = 159/221 (71%), Gaps = 6/221 (2%)

Query: 10  GWEVYVIFRLFVLDQNKDEFLILQDAMGKERRFHVLKLEWGFDQFIPLEEFNDASNGYLV 69
           GWEVY +FRL++LDQNKD +LILQ   G ERRFH +K EWGFD+FIP   F+DASNGYL+
Sbjct: 80  GWEVYAVFRLYLLDQNKDNYLILQ---GNERRFHSVKREWGFDKFIPTGTFSDASNGYLM 136

Query: 70  GDTCVFGAEVLV-KERNKCKGECLFLAKLTSASNYKHVWKIENFSKLEAKLYESEVFVAG 128
            DTC+FGA+V V KER   +GECL + K   A++ KHVWKIENFSKL+ + Y+S  F AG
Sbjct: 137 EDTCMFGADVFVSKERRSGRGECLSMIK--DATSSKHVWKIENFSKLDKESYDSNAFFAG 194

Query: 129 NQKWKIKLYPKGQGVGRGSHISVYLALADLSTITRDSKIYVHFTLRIRDQVLSKHNEKKA 188
           ++KWKI+ YP G   G G+H+S+YL L D  TI+  +KI+V FT+RI DQ+  +H   K 
Sbjct: 195 DRKWKIEFYPTGTKQGTGTHLSIYLTLVDPETISDGTKIFVEFTIRIFDQLQGRHIAGKV 254

Query: 189 STWLSTSSEDWGWSTFVELSYFNKAENGFLMNDVCIVEAEV 229
           + W S SS + GW  +V + YF +  +G L+ DVC+VEA+V
Sbjct: 255 TKWFSRSSSEHGWVKYVSMVYFTQPNSGLLLKDVCLVEADV 295

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255556544|ref|XP_002519306.1| nucleic acid binding protein, putative [Ricinus communis] gi|223541621|gb|EEF43170.1| nucleic acid binding protein, putative [Ricinus communis]

 Score =  250 bits (639), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 127/230 (55%), Positives = 159/230 (69%), Gaps = 6/230 (2%)

Query: 1   MVDTSSLGLGWEVYVIFRLFVLDQNKDEFLILQDAMGKERRFHVLKLEWGFDQFIPLEEF 60
           M D+S+L LGWEV+V+FRLF+LDQ +D +LIL    GKE RFH  +LEWGFDQ IPL   
Sbjct: 222 MADSSNLQLGWEVHVVFRLFLLDQIRDNYLILP---GKECRFHGFRLEWGFDQLIPLATL 278

Query: 61  NDASNGYLVGDTCVFGAEVLV-KERNKCKGECLFLAKLTSASNYKHVWKIENFSKLEAKL 119
            D  NGYLV DTCVFGAEV V KE    KGECL + K  S+S  K++W+ ENFSKL+A+ 
Sbjct: 279 KDTKNGYLVEDTCVFGAEVFVRKESCTGKGECLSMIK--SSSTSKNLWRFENFSKLDAEC 336

Query: 120 YESEVFVAGNQKWKIKLYPKGQGVGRGSHISVYLALADLSTITRDSKIYVHFTLRIRDQV 179
            +S+ FVAG+Q+WKI+LYPKG+G+G G+H+S++LALADL+ IT   KI   FTLRI DQ 
Sbjct: 337 NDSKTFVAGDQRWKIQLYPKGKGLGSGTHLSLFLALADLTAITPGFKILADFTLRILDQS 396

Query: 180 LSKHNEKKASTWLSTSSEDWGWSTFVELSYFNKAENGFLMNDVCIVEAEV 229
              H   KA+ W S SS   GWS F  L     + N +L  D C+ EAE+
Sbjct: 397 RGSHLFGKANFWFSASSSVCGWSRFYPLDQLYASSNAYLFKDTCLGEAEI 446

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449441502|ref|XP_004138521.1| PREDICTED: BTB/POZ and MATH domain-containing protein 3-like [Cucumis sativus]

 Score =  247 bits (630), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 124/237 (52%), Positives = 163/237 (68%), Gaps = 4/237 (1%)

Query: 1   MVDTSSLGLGWEVYVIFRLFVLDQNKDEFLILQDAMGKERRFHVLKLEWGFDQFIPLEEF 60
           +  T SL   WEV+V++RLF+LDQNKD +L ++D   K RRF  +K +WGFD++I L+EF
Sbjct: 78  IAGTDSLQPSWEVFVVYRLFLLDQNKDNYLTVEDGKWKPRRFRGMKKQWGFDKYISLKEF 137

Query: 61  NDASNGYLVGDTCVFGAEVLVKERN--KCKGECLFLAKLTSASNYKHVWKIENFSKLEAK 118
            ++SNGYLV D CVFGAEV V + N    KGECL + K  S   YKHVWKI+NFSKL+A+
Sbjct: 138 KESSNGYLVDDVCVFGAEVFVCKENFKGGKGECLSMIK--SPVTYKHVWKIDNFSKLDAE 195

Query: 119 LYESEVFVAGNQKWKIKLYPKGQGVGRGSHISVYLALADLSTITRDSKIYVHFTLRIRDQ 178
            YES++F AG++KWKI++YPKG G G GSH+S YL LAD + +   +KIY   TLR++DQ
Sbjct: 196 SYESKIFNAGDKKWKIRVYPKGHGSGEGSHLSPYLELADPAALHPATKIYAEVTLRLQDQ 255

Query: 179 VLSKHNEKKASTWLSTSSEDWGWSTFVELSYFNKAENGFLMNDVCIVEAEVLRISKA 235
           + SKH+  K S W S S+ + G   F+ L  F +   GFL+ D  IVEAEV  I  A
Sbjct: 256 IYSKHHSGKVSYWFSASNPEVGGPRFILLDNFKQPNIGFLVKDAFIVEAEVSIIGVA 312

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449522688|ref|XP_004168358.1| PREDICTED: BTB/POZ and MATH domain-containing protein 3-like [Cucumis sativus]

 Score =  247 bits (630), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 124/237 (52%), Positives = 163/237 (68%), Gaps = 4/237 (1%)

Query: 1   MVDTSSLGLGWEVYVIFRLFVLDQNKDEFLILQDAMGKERRFHVLKLEWGFDQFIPLEEF 60
           +  T SL   WEV+V++RLF+LDQNKD +L ++D   K RRF  +K +WGFD++I L+EF
Sbjct: 78  IAGTDSLQPSWEVFVVYRLFLLDQNKDNYLTVEDGKWKPRRFRGMKKQWGFDKYISLKEF 137

Query: 61  NDASNGYLVGDTCVFGAEVLVKERN--KCKGECLFLAKLTSASNYKHVWKIENFSKLEAK 118
            ++SNGYLV D CVFGAEV V + N    KGECL + K  S   YKHVWKI+NFSKL+A+
Sbjct: 138 KESSNGYLVDDVCVFGAEVFVCKENFKGGKGECLSMIK--SPVTYKHVWKIDNFSKLDAE 195

Query: 119 LYESEVFVAGNQKWKIKLYPKGQGVGRGSHISVYLALADLSTITRDSKIYVHFTLRIRDQ 178
            YES++F AG++KWKI++YPKG G G GSH+S YL LAD + +   +KIY   TLR++DQ
Sbjct: 196 SYESKIFNAGDKKWKIRVYPKGHGSGEGSHLSPYLELADPAALHPATKIYAEVTLRLQDQ 255

Query: 179 VLSKHNEKKASTWLSTSSEDWGWSTFVELSYFNKAENGFLMNDVCIVEAEVLRISKA 235
           + SKH+  K S W S S+ + G   F+ L  F +   GFL+ D  IVEAEV  I  A
Sbjct: 256 IYSKHHSGKVSYWFSASNPEVGGPRFILLDNFKQPNIGFLVKDAFIVEAEVNVIGVA 312

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356519881|ref|XP_003528597.1| PREDICTED: uncharacterized protein LOC100779090 [Glycine max]

 Score =  241 bits (614), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 122/229 (53%), Positives = 158/229 (68%), Gaps = 3/229 (1%)

Query: 3   DTSSLGLGWEVYVIFRLFVLDQNKDEFLILQDAMGKERRFHVLKLEWGFDQFIPLEEFND 62
           DTSSL  GWE+YV FR F+ DQ  D +L+  D +  ERRFH +K EWG DQFIPL +FN 
Sbjct: 75  DTSSLHHGWEIYVNFRFFLHDQTNDNYLVGPDTVRNERRFHKMKAEWGIDQFIPLRDFNL 134

Query: 63  ASNGYLVGDTCVFGAEVLV-KERNKCKGECLFLAKLTSASNYKHVWKIENFSKLEAKLYE 121
           AS GYLV DTC FGAEV V KER+  KGECL + K   A  YKH+++ +N SKL+ + Y+
Sbjct: 135 ASKGYLVDDTCAFGAEVFVCKERSTGKGECLVMMK--EAILYKHLYEFDNLSKLDLECYD 192

Query: 122 SEVFVAGNQKWKIKLYPKGQGVGRGSHISVYLALADLSTITRDSKIYVHFTLRIRDQVLS 181
           S+ F AGN KWKIKLYPKG+G   G+++S+YLALAD S ++  SKIY   TLRI DQ  +
Sbjct: 193 SKPFNAGNFKWKIKLYPKGKGAELGNYLSLYLALADPSALSPCSKIYAQITLRILDQKQA 252

Query: 182 KHNEKKASTWLSTSSEDWGWSTFVELSYFNKAENGFLMNDVCIVEAEVL 230
           KH+  KA+ W S SS + G + F+ ++ F     G+++ D C VEAEV+
Sbjct: 253 KHHFGKANYWFSASSHENGAAIFMPINNFTNQNFGYVVKDSCFVEAEVI 301

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357479139|ref|XP_003609855.1| Ubiquitin carboxyl-terminal hydrolase [Medicago truncatula] gi|355510910|gb|AES92052.1| Ubiquitin carboxyl-terminal hydrolase [Medicago truncatula]

 Score =  231 bits (589), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 117/228 (51%), Positives = 155/228 (67%), Gaps = 3/228 (1%)

Query: 3   DTSSLGLGWEVYVIFRLFVLDQNKDEFLILQDAMGKERRFHVLKLEWGFDQFIPLEEFND 62
           ++SSL  GWE+YV F+LFV DQN D +L+LQD + KE+RFH +K+EWGFDQFIPL++FN 
Sbjct: 76  ESSSLHPGWEIYVNFKLFVYDQNNDNYLVLQDDVKKEKRFHRMKVEWGFDQFIPLKDFNI 135

Query: 63  ASNGYLVGDTCVFGAEVLV-KERNKCKGECLFLAKLTSASNYKHVWKIENFSKLEAKLYE 121
            S GYL+ D C FGAEV V +E    KGE L + K   A  YKHVW+I++FSKL+++  +
Sbjct: 136 GSKGYLLDDICAFGAEVFVCRENYTGKGESLIMMK--DALPYKHVWEIKDFSKLDSECCD 193

Query: 122 SEVFVAGNQKWKIKLYPKGQGVGRGSHISVYLALADLSTITRDSKIYVHFTLRIRDQVLS 181
           S+ F  GN KW+IKLYPKG+    G ++++YL LA+ +TI   SKIY    LRI DQ  S
Sbjct: 194 SKPFNVGNYKWQIKLYPKGKATDLGRYLALYLTLANPTTIPPGSKIYAQTILRILDQKQS 253

Query: 182 KHNEKKASTWLSTSSEDWGWSTFVELSYFNKAENGFLMNDVCIVEAEV 229
           KH   KA+ W S SS + G S F+  S F     G+L+ D+C V+ EV
Sbjct: 254 KHQFWKANYWFSASSHEHGTSRFILCSNFTSQYLGYLVKDICFVDVEV 301

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224100507|ref|XP_002311903.1| predicted protein [Populus trichocarpa] gi|222851723|gb|EEE89270.1| predicted protein [Populus trichocarpa]

 Score =  223 bits (568), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 122/245 (49%), Positives = 162/245 (66%), Gaps = 19/245 (7%)

Query: 1   MVDTSSLGLGWEVYVIFRLFVLDQNKDEFLILQ------------DAMGKERRFHVLKLE 48
           MVD SSL  GWEV VIFRLF+LDQNKD +L +             DA GKERRFH LKLE
Sbjct: 1   MVDASSLPRGWEVNVIFRLFLLDQNKDSYLKVMPLSDVLALLPRLDAAGKERRFHGLKLE 60

Query: 49  WGFDQFIPLEEFNDASNGYLVGDTCVFGAEVLV-KERNKCKGECLFLAKLTSASNYKHVW 107
            GFDQFI L  FNDA  G+++ DTCV GAEV V  ER++ KGE L + K  +AS  K+ W
Sbjct: 61  CGFDQFIKLSTFNDARYGFVLEDTCVLGAEVFVCGERSRGKGEVLSMKKDPTAS--KYTW 118

Query: 108 KIENFSKLEAKLYESEVFVAGNQKWKIKLYPKGQGVGRGSHISVYLALADLSTITRDSKI 167
           KI +FSKL+ K  ES++F  G+ +WKI LYPKG+G G G+H+S+YLAL DL+T+    ++
Sbjct: 119 KIVDFSKLDEKRQESQIFSTGDHQWKIVLYPKGKGPGMGTHLSLYLAL-DLATLPAGCRV 177

Query: 168 YVHFTLRIRDQVLSKHNE--KKASTWLSTSSEDWGWSTFVELSYFNKAENGFLMNDVCIV 225
           Y  +TLR+ DQ+  +  +   KA +W   SS + GWS +  LS + ++ N     D+C++
Sbjct: 178 YAEYTLRLVDQLYDRKFDMYGKAKSWFGASSSENGWSRYGLLSLY-QSNNYLFAKDICMI 236

Query: 226 EAEVL 230
           EAEV+
Sbjct: 237 EAEVI 241

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	236
TAIR|locus:2089045	309	AT3G17380 "AT3G17380" [Arabido	0.949	0.724	0.543	1.2e-65
TAIR|locus:2092344	379	AT3G20370 "AT3G20370" [Arabido	0.953	0.593	0.337	4.9e-30
TAIR|locus:2055998	420	AT2G04170 "AT2G04170" [Arabido	0.957	0.538	0.331	6.2e-30
TAIR|locus:2098318	370	AT3G28220 "AT3G28220" [Arabido	0.923	0.589	0.340	3.4e-29
TAIR|locus:2179744	351	AT5G26260 "AT5G26260" [Arabido	0.957	0.643	0.318	1.2e-28
TAIR|locus:2179699	350	AT5G26280 "AT5G26280" [Arabido	0.957	0.645	0.323	3.1e-28
TAIR|locus:2092329	363	AT3G20360 "AT3G20360" [Arabido	0.961	0.625	0.312	1.3e-27
TAIR|locus:2016590	396	ZW9 "AT1G58270" [Arabidopsis t	0.940	0.560	0.309	2.5e-26
TAIR|locus:2026745	231	AT1G69660 "AT1G69660" [Arabido	0.826	0.844	0.310	3.2e-26
TAIR|locus:2056008	411	AT2G04190 "AT2G04190" [Arabido	0.957	0.549	0.297	9.7e-25

TAIR|locus:2089045 AT3G17380 "AT3G17380" [Arabidopsis thaliana (taxid:3702)]

 Score = 668 (240.2 bits), Expect = 1.2e-65, P = 1.2e-65
 Identities = 125/230 (54%), Positives = 165/230 (71%)

Query:     1 MVDTSSLGLGWEVYVIFRLFVLDQNKDEFLILQDAMGKERRFHVLKLEWGFDQFIPLEEF 60
             + D+SSL  GWEVY +FRL++LDQNKD +LILQ   G ERRFH +K EWGFD+FIP   F
Sbjct:    76 LADSSSLSPGWEVYAVFRLYLLDQNKDNYLILQ---GNERRFHSVKREWGFDKFIPTGTF 132

Query:    61 NDASNGYLVGDTCVFGAEVLV-KERNKCKGECLFLAKLTSASNYKHVWKIENFSKLEAKL 119
             +DASNGYL+ DTC+FGA+V V KER   +GECL + K   A++ KHVWKIENFSKL+ + 
Sbjct:   133 SDASNGYLMEDTCMFGADVFVSKERRSGRGECLSMIK--DATSSKHVWKIENFSKLDKES 190

Query:   120 YESEVFVAGNQKWKIKLYPKGQGVGRGSHISVYLALADLSTITRDSKIYVHFTLRIRDQV 179
             Y+S  F AG++KWKI+ YP G   G G+H+S+YL L D  TI+  +KI+V FT+RI DQ+
Sbjct:   191 YDSNAFFAGDRKWKIEFYPTGTKQGTGTHLSIYLTLVDPETISDGTKIFVEFTIRIFDQL 250

Query:   180 LSKHNEKKASTWLSTSSEDWGWSTFVELSYFNKAENGFLMNDVCIVEAEV 229
               +H   K + W S SS + GW  +V + YF +  +G L+ DVC+VEA+V
Sbjct:   251 QGRHIAGKVTKWFSRSSSEHGWVKYVSMVYFTQPNSGLLLKDVCLVEADV 300

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2092344 AT3G20370 "AT3G20370" [Arabidopsis thaliana (taxid:3702)]

 Score = 332 (121.9 bits), Expect = 4.9e-30, P = 4.9e-30
 Identities = 80/237 (33%), Positives = 123/237 (51%)

Query:     2 VDTSSLGLGWEVYVIFRLFVLDQNKDEFLILQDAMGKERRFHVLKLEWGFDQFIPLEEFN 61
             +D S+LG   E+Y   R ++ ++N+ ++  +QD      +F V K  WGF Q +P++ F 
Sbjct:   143 IDNSTLGQQ-EIYADLRFYIFNKNERKYFTIQDT--DVWKFSVFKTMWGFSQVLPIDTFK 199

Query:    62 DASNGYLV-GDTCVFGAEVLVKERNKCKGECLFLAKLTSASNYKHVWKIENFSKLEAKLY 120
             D + GYL  GD C FG +V +    + K E LF +   +  N +  W I  FS L    Y
Sbjct:   200 DPTKGYLYDGDHCEFGVDVTMPSLYE-KSE-LF-SVTENFLNPRFTWTIRGFSTLLKNSY 256

Query:   121 ESEVFVAGNQKWKIKLYPKGQGVGRGSHISVYLALADLSTITRD-SKIYVHFTLRIRDQV 179
              SEVF  G + W I++ P G G G G  +S+YL L +++ I R   KIYV   LR  +Q+
Sbjct:   257 LSEVFSIGGRSWNIQINPSGLGTGEGKALSMYLGL-NVNEIFRPYEKIYVRAKLRALNQL 315

Query:   180 LSKHNEKKASTWLST---SSEDWGWSTFVELSYFNKAENGFLMNDVCIVEAEVLRIS 233
                + E++   W +        WG+  F+   Y   +  GF+ NDV +V+ E+  IS
Sbjct:   316 NLSNIERELDIWYNGPGYGEYSWGFPEFIYFPYLTDSSKGFVKNDVLMVQVEMEAIS 372

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2055998 AT2G04170 "AT2G04170" [Arabidopsis thaliana (taxid:3702)]

 Score = 331 (121.6 bits), Expect = 6.2e-30, P = 6.2e-30
 Identities = 77/232 (33%), Positives = 125/232 (53%)

Query:     3 DTSSLGLGWEVYVIFRLFVLDQNKDEFLILQDAMGKERRFHVLKLEWGFDQFIPLEEFND 62
             +T SL  GWEV V  +LFV +  + ++LI++D + K  R++  K EWG+ + IPL  F D
Sbjct:   187 ETESLPKGWEVNVELKLFVYNGKQRKYLIVKDGIVK--RYNDAKKEWGYGKLIPLTTFLD 244

Query:    63 ASNGYLVGDTCVFGAEVLVKERNKCKGECLFLAKLTSASNYKHVWKIENFSKLEAKLYES 122
              + GYL  D   FGAE+      + + +  F++   +  N    WKI +FS LE K Y S
Sbjct:   245 TNEGYLEQDIASFGAEIFSGTAVQVQEKVTFIS---NPPNNVFTWKILHFSNLEDKFYYS 301

Query:   123 EVFVAGNQKWKIKLYPKGQGVGRGSHISVYLALADLSTITRDSKIYVHFTLRIRDQVLSK 182
             + F+  ++ W++   PKG G GR   I ++L           +  +    LR+++Q  S 
Sbjct:   302 DDFLVEDRYWRLGFNPKGTGDGRSQAIPIFLYAQGHKPNAVATNTWGAVNLRLKNQRSSN 361

Query:   183 HNEKKASTWLSTSSE-DWGWSTFVELSYFNKAENGFLMNDVCIVEAEVLRIS 233
             H +  ++ W  T S+   G +T + L+ FN A  G+ +ND  I EAE++++S
Sbjct:   362 HAQIYSAAWYPTRSDYGVGVNTIISLAEFNDASKGYSVNDSIIFEAEMVKVS 413

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2098318 AT3G28220 "AT3G28220" [Arabidopsis thaliana (taxid:3702)]

 Score = 324 (119.1 bits), Expect = 3.4e-29, P = 3.4e-29
 Identities = 78/229 (34%), Positives = 116/229 (50%)

Query:     2 VDTSSL-GLGWEVYVIFRLFVLDQNKDEFLILQDAMGKERRFHVLKLEWGFDQFIPLEEF 60
             +D S+L     EVY   + F+ ++ +D++L  Q+   K  RF + K  WG+    P  + 
Sbjct:   139 IDNSTLLNSPKEVYAEVKFFIYNRKEDKYLTYQETDAK--RFFLFKPYWGYGNVRPYTDV 196

Query:    61 NDASNGYLV-GDTCVFGAEVLVKERNKCKGECLFLAKLTSASNYKHVWKIENFSKLEAKL 119
              + + G+L  GD  +FG +V V E    K E     K      YK  W + NFS LE + 
Sbjct:   197 ANPNAGWLFDGDNVLFGVDVFVTEVFN-KWEVFSFTKSLHDRLYK--WTLPNFSSLEKQY 253

Query:   120 YESEVFVAGNQKWKIKLYPKGQGVGRGSHISVYLALADLSTITRDSKIYVHFTLRIRDQV 179
             Y S+ FV G + W +K+YP G G G+G+ +S+Y+   D+       KIY+   LRI +Q 
Sbjct:   254 YVSDKFVIGGRSWALKVYPSGDGEGQGNSLSLYVVAVDVKPY---DKIYLKAKLRIINQR 310

Query:   180 LSKHNEKKASTWLSTSSEDWGWSTFVELSYFNKAENGFLMNDVCIVEAE 228
              SKH EKK  +W S  +  WG+  FV  +       G L+ND   +E E
Sbjct:   311 DSKHMEKKVESW-SDQANSWGFQKFVPFADLKDTSKGLLVNDTLKMEIE 358

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0005773 "vacuole" evidence=IDA

GO:0031540 "regulation of anthocyanin biosynthetic process" evidence=RCA

TAIR|locus:2179744 AT5G26260 "AT5G26260" [Arabidopsis thaliana (taxid:3702)]

 Score = 319 (117.4 bits), Expect = 1.2e-28, P = 1.2e-28
 Identities = 74/232 (31%), Positives = 122/232 (52%)

Query:     3 DTSSLGLGWEVYVIFRLFVLDQNKDEFLILQDAMGKERRFHVLKLEWGFDQFIPLEEFND 62
             +T +L  GWEV V  +LFV ++   ++L + D  G  +R++  K EWGF Q I L  F +
Sbjct:   118 ETETLPRGWEVNVDLKLFVHNRKLKKYLSVTD--GTVKRYNDAKKEWGFTQLISLPTFYN 175

Query:    63 ASNGYLVGDTCVFGAEVLVKERNKCKGECLFLAKLTSASNYKHVWKIENFSKLEAKLYES 122
             A+ GYLV DT  FGAE+ +    + + +  F++      N    WKI  FS LE K Y S
Sbjct:   176 ANEGYLVQDTASFGAEIFIVNPTEKQEKVTFISN--PPDNV-FTWKILRFSTLEDKFYYS 232

Query:   123 EVFVAGNQKWKIKLYPKGQGVGRGSHISVYLALADLSTITRDSKIYVHFTLRIRDQVLSK 182
             + F+ G++ W++   PKG G GR   + ++L           +  +    LR+++Q  S 
Sbjct:   233 DDFLVGDRYWRLGFNPKGSGGGRPHALPIFLYAQGHKANAVVTNTWGAVNLRLKNQRSSN 292

Query:   183 HNEKKASTWLSTSSE-DWGWSTFVELSYFNKAENGFLMNDVCIVEAEVLRIS 233
             H +  ++ W    S+   G +  + +S    A  G+++ND  I EAE++++S
Sbjct:   293 HKQLYSAAWYPIRSDYGVGVNNIILMSELKDASKGYMVNDAIIFEAEMVKVS 344

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2179699 AT5G26280 "AT5G26280" [Arabidopsis thaliana (taxid:3702)]

 Score = 315 (115.9 bits), Expect = 3.1e-28, P = 3.1e-28
 Identities = 75/232 (32%), Positives = 123/232 (53%)

Query:     3 DTSSLGLGWEVYVIFRLFVLDQNKDEFLILQDAMGKERRFHVLKLEWGFDQFIPLEEFND 62
             +T+SL LGWEV V  +LFV +    ++L + D + K  R++  K EWGF Q IP   F +
Sbjct:   117 ETNSLPLGWEVNVDLKLFVHNGKLHKYLTVTDGLVK--RYNNAKKEWGFGQLIPRSTFYN 174

Query:    63 ASNGYLVGDTCVFGAEVLVKERNKCKGECLFLAKLTSASNYKHVWKIENFSKLEAKLYES 122
             A+ GYL  DT  FGAE+ + +  + + +  F++   +  N    WKI  FS LE K Y S
Sbjct:   175 ANEGYLDQDTGSFGAEIFIVKPAQQQEKVTFIS---NPPNNVFTWKILRFSTLEDKFYYS 231

Query:   123 EVFVAGNQKWKIKLYPKGQGVGRGSHISVYLALADLSTITRDSKIYVHFTLRIRDQVLSK 182
             + F+  ++ W++   PKG G GR   + ++L           +  +    LR+++Q  + 
Sbjct:   232 DDFLVEDRYWRLGFNPKGDGGGRPHALPIFLFAQGHKANAVATNTWGAVNLRLKNQRSTN 291

Query:   183 HNEKKASTWLSTSSE-DWGWSTFVELSYFNKAENGFLMNDVCIVEAEVLRIS 233
             H +  ++ W    S    G +  + L+  N A  G+L+ND  I EAE++++S
Sbjct:   292 HRQIYSAAWYPIGSGYGVGVNNIILLADLNDASKGYLVNDAIIFEAEMVKVS 343

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0016020 "membrane" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0000041 "transition metal ion transport" evidence=RCA

TAIR|locus:2092329 AT3G20360 "AT3G20360" [Arabidopsis thaliana (taxid:3702)]

 Score = 309 (113.8 bits), Expect = 1.3e-27, P = 1.3e-27
 Identities = 75/240 (31%), Positives = 124/240 (51%)

Query:     1 MVDTSSL-GLGWEVYVIFRLFVLDQNKDEFLILQDAMGKERRFHVLKLEWGFDQFIPLEE 59
             ++D S+L     EV+V  R +V ++ + ++  +QD      RF  +K  WGF + +PL  
Sbjct:   123 VLDNSTLTSQSEEVHVDLRFYVFNKKETKYFTIQDT--DVWRFSAIKRMWGFSKVLPLIT 180

Query:    60 FNDASNGYLVG-DTCVFGAEVLVKERNKCKGECLFLAKLTSASNYKHVWKIENFSKLEAK 118
             FN+  NGYL   D C FG +V++    + K E   + K  S  + +  W I+ +S L   
Sbjct:   181 FNNLKNGYLYDVDHCEFGVDVIIPPFYE-KSEVFSVTK--SFPSPRFTWYIQGYSTLPTD 237

Query:   119 LYESEVFVAGNQKWKIKLYPKGQGVGRGSHISVYLALA--DLSTITRDSKIYVHFTLRIR 176
              Y SE F+ G + W ++++  G G   G ++S+YL L   +L       K+YV   LR+ 
Sbjct:   238 -YLSEEFIIGGKSWNLRIFKNGFGAFEGKNLSLYLNLGPQELLKAKPYDKVYVRAKLRVP 296

Query:   177 DQVLSKHN---EKKASTWLSTSSEDWGWSTFVELSYFNKAENGFLMNDVCIVEAEVLRIS 233
             +Q  S+ N   E+    W S  +  WG++ F+ LS    +  GFL+ND+ +V+  +  IS
Sbjct:   297 NQFGSQSNLVLERPLDNWFSPQTIGWGYADFMPLSDLRNSSKGFLVNDMLVVQVAMEEIS 356

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2016590 ZW9 "AT1G58270" [Arabidopsis thaliana (taxid:3702)]

 Score = 297 (109.6 bits), Expect = 2.5e-26, P = 2.5e-26
 Identities = 73/236 (30%), Positives = 121/236 (51%)

Query:     2 VDTSSLGLG-WEVYVIFRLFVLDQNKDEFLILQDAMGKERRFHVLKLEWGFDQFIPLEEF 60
             VD SSL     +VY          + D++ I Q+   + +RFH+ K +WG  QF+P+  F
Sbjct:   154 VDNSSLITNPKDVYAEITFLAYKSSTDKYQISQET--EAQRFHLFKQQWGLLQFLPIYYF 211

Query:    61 NDASNGYLV-GDTCVFGAEV-LVKERNKCKGECLFLAKLTSASNYKHVWKIENFSKLEAK 118
              + + GY   G++ VFG ++ +VK     +   +F +   +  +    W++  FS     
Sbjct:   212 ENPAYGYFFEGESVVFGVDINIVKPFENWE---VF-SNEQNIRDPIFEWRLTKFSTRFLD 267

Query:   119 LYESEVFVAGNQKWKIKLYPKGQGVGRGSHISVYLALADLSTITRDSKIYVHFTLRIRDQ 178
              Y S+ F +G + W +K+YP G G   G+ +S+YL L+D S    + K YV   LR+ DQ
Sbjct:   268 SYTSDSFSSGGRNWALKVYPNGVGNATGNSLSLYL-LSDQS----NDKGYVEAKLRVIDQ 322

Query:   179 VLSKHNEKKASTWLSTSSEDWGWSTFVELSYFNKAENGFLMNDVCIVEAEVLRISK 234
             + S + EKK + W + +   WG+  F+  +       GFL+ND   +E ++L  SK
Sbjct:   323 IQSNNFEKKVAAWPNATENGWGFDRFLSFADIKNTSKGFLVNDTLKLEVQILSFSK 378

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2026745 AT1G69660 "AT1G69660" [Arabidopsis thaliana (taxid:3702)]

 Score = 296 (109.3 bits), Expect = 3.2e-26, P = 3.2e-26
 Identities = 63/203 (31%), Positives = 109/203 (53%)

Query:    12 EVYVIFRLFVLDQNKDEFLILQDAMGKERRFHVLKLEWGFDQFIPLEEFNDASNGYLV-G 70
             E +   R +V ++ ++++  +QD   + +RF+ L++ WG  + +  + F +  NG++  G
Sbjct:     8 EAFAELRFYVYNKKENKYFTIQDV--EVKRFNALRMVWGLLKVLSYDTFTNPENGFIFEG 65

Query:    71 DTCVFGAEVLVKERNKCKGECL-FLAKLTSASNYKHVWKIENFSKLEAKLYESEVFVAGN 129
               C FG +VLV        E L F  KL+     K  W ++NFS+L+  +Y S  +  G 
Sbjct:    66 GECEFGVDVLVAPP-LTNWEILSFDEKLSPP---KFSWNLKNFSELKEDVYTSNKYPMGG 121

Query:   130 QKWKIKLYPKGQGVGRGSHISVYLALADLSTITRDSKIYVHFTLRIRDQVLSKHNEKKAS 189
             ++W +KLYPKG     G ++S+Y+ LAD  T+  D K +    +R+ + + S H E ++S
Sbjct:   122 KEWVLKLYPKGNSRADGKYLSLYVHLADSETLKSDEKNFKQGHVRVLNPLGSNHVEVQSS 181

Query:   190 TWLSTSSEDWGWSTFVELSYFNK 212
              W   SS  WGW  F+ ++   K
Sbjct:   182 CWYKESSRGWGWDHFLSIANLRK 204

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2056008 AT2G04190 "AT2G04190" [Arabidopsis thaliana (taxid:3702)]

 Score = 282 (104.3 bits), Expect = 9.7e-25, P = 9.7e-25
 Identities = 69/232 (29%), Positives = 121/232 (52%)

Query:     3 DTSSLGLGWEVYVIFRLFVLDQNKDEFLILQDAMGKERRFHVLKLEWGFDQFIPLEEFND 62
             +T  L     +  + +LFV +  +D++L + D  G ++R++    EWG+ + IPL  F D
Sbjct:   178 ETDHLTYDGSINFVLKLFVYNGKQDKYLTVTD--GIQKRYNYKNKEWGYGKLIPLSTFLD 235

Query:    63 ASNGYLVGDTCVFGAEVLVKERNKCKGECLFLAKLTSASNYKHVWKIENFSKLEAKLYES 122
              S GYL  DT  FGAE+ +    + + +  F++   +  N    WKI +FS LE  +Y S
Sbjct:   236 TSQGYLEQDTASFGAEIFLCPPIQVQEKVTFIS---NPPNNVFTWKILHFSTLEDIVYYS 292

Query:   123 EVFVAGNQKWKIKLYPKGQGVGRGSHISVYLALADLSTITRDSKIYVHFTLRIRDQVLSK 182
             + F+  ++ W++ + PKG G GR   I ++L           S  +    LR+++Q  S 
Sbjct:   293 DDFLVEDRYWRLGVNPKGTGDGRSQAIKIFLYAQGHKPNAVVSSTWGAVNLRVKNQRSSN 352

Query:   183 HNE-KKASTWLSTSSEDWGWSTFVELSYFNKAENGFLMNDVCIVEAEVLRIS 233
             H++   A+ +   +    G +T + L+  N A   +L+ND  I EAE++++S
Sbjct:   353 HSQIYSAALYPIRNDYGVGVNTVLSLAELNDAVKEYLVNDSIIFEAEMVKVS 404

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005739 "mitochondrion" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	236
cd00121	126	cd00121, MATH, MATH (meprin and TRAF-C homology) d	5e-29
smart00061	95	smart00061, MATH, meprin and TRAF homology	3e-09
pfam00917	116	pfam00917, MATH, MATH domain	1e-08
cd03775	134	cd03775, MATH_Ubp21p, Ubiquitin-specific protease	1e-08
cd00121	126	cd00121, MATH, MATH (meprin and TRAF-C homology) d	4e-08
cd03773	132	cd03773, MATH_TRIM37, Tripartite motif containing	3e-07
COG5077	1089	COG5077, COG5077, Ubiquitin carboxyl-terminal hydr	2e-05
pfam00917	116	pfam00917, MATH, MATH domain	4e-04
cd03772	137	cd03772, MATH_HAUSP, Herpesvirus-associated ubiqui	0.001
cd03774	139	cd03774, MATH_SPOP, Speckle-type POZ protein (SPOP	0.002

>gnl|CDD|238068 cd00121, MATH, MATH (meprin and TRAF-C homology) domain; an independent folding unit with an eight-stranded beta-sandwich structure found in meprins, TRAFs and other proteins

 Score =  105 bits (264), Expect = 5e-29
 Identities = 39/127 (30%), Positives = 61/127 (48%), Gaps = 4/127 (3%)

Query: 104 KHVWKIENFSKLEAKLYESEVFVAGNQKWKIKLYPKGQGVGRGSHISVYLALADLSTITR 163
           KH WKI NFS+LE +   S  F  G  KW+I++YP G G   G ++S+YL L    +   
Sbjct: 2   KHTWKIVNFSELEGESIYSPPFEVGGYKWRIRIYPNGDGE-SGDYLSLYLELDKGESDLE 60

Query: 164 DSKIYVHFTLRIRDQVLSKHNEKKASTWLSTSSE-DWGWSTFVELSYFNKAENGFLMNDV 222
              +   FTL++ +Q   K   K  +    +     WG+  F+         + +L++D 
Sbjct: 61  KWSVRAEFTLKLVNQNGGKSLSKSFTHVFFSEKGSGWGFPKFISWDDLED--SYYLVDDS 118

Query: 223 CIVEAEV 229
             +E EV
Sbjct: 119 LTIEVEV 125

Meprins comprise a class of extracellular metalloproteases which are anchored to the membrane and are capable of cleaving growth factors, extracellular matrix proteins, and biologically active peptides. TRAF molecules serve as adapter proteins that link cell surface receptors of the Tumor Necrosis Factor and 1nterleukin-1/Toll-like families to downstream kinase cascades, which results in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses in the immune and inflammatory systems. Other members include the ubiquitin ligases, TRIM37 and SPOP, and the ubiquitin-specific proteases, HAUSP and Ubp21p. A large number of uncharacterized members mostly from lineage-specific expansions in C. elegans and rice contain MATH and BTB domains, similar to SPOP. The MATH domain has been shown to bind peptide/protein substrates in TRAFs and HAUSP. It is possible that the MATH domain in other members of this superfamily also interacts with various protein substrates. The TRAF domain may also be involved in the trimerization of TRAFs. Based on homology, it is postulated that the MATH domain in meprins may be involved in its tetramer assembly and that the MATH domain, in general, may take part in diverse modular arrangements defined by adjacent multimerization domains. Length = 126

>gnl|CDD|214496 smart00061, MATH, meprin and TRAF homology

 Score = 52.7 bits (127), Expect = 3e-09
 Identities = 25/102 (24%), Positives = 41/102 (40%), Gaps = 9/102 (8%)

Query: 105 HVWKIENFSKLEA-KLYESEVFVAGNQKWKIKLYPKGQGVGRGSHISVYLALADLSTITR 163
                +N S+LE  + Y S      N  W++K+Y K         +S+YL        +R
Sbjct: 2   LSHTFKNVSRLEEGESYFSPSEEHFNIPWRLKIYRK------NGFLSLYLHCEKEECDSR 55

Query: 164 DSKIYVHFTLRIRDQVLSKHNEKKASTWLSTSSEDWGWSTFV 205
              I   FTL++  Q     ++K    +       WG+S F+
Sbjct: 56  KWSIEAEFTLKLVSQNGKSLSKKDKHVF--EKPSGWGFSKFI 95

Length = 95

>gnl|CDD|216189 pfam00917, MATH, MATH domain

 Score = 51.5 bits (124), Expect = 1e-08
 Identities = 30/124 (24%), Positives = 52/124 (41%), Gaps = 13/124 (10%)

Query: 109 IENFSKLEAK--LYESEVFVAGNQKWKIKLYPKGQGVGRGSHISVYL-ALADLSTITRDS 165
           I+NFSK++     Y S         W++++Y        G  + +YL             
Sbjct: 1   IKNFSKIKEGENYYTSPYEERFGIPWRLRIYRN------GGFLGLYLHCEKGEKDELLGW 54

Query: 166 KIYVHFTLRIRDQVLSKHNEKKASTWLSTSSEDWGWSTFVELSYFNKAENGFLMNDVCIV 225
            I   FTL++      K   K+  + + T    +GW  F+     +  EN ++++D  I+
Sbjct: 55  SIETEFTLKLVSD-NGKSLTKRNKSHVFTKPTGYGWGKFISW---DDLENDYVVDDTIII 110

Query: 226 EAEV 229
           EAEV
Sbjct: 111 EAEV 114

This motif has been called the Meprin And TRAF-Homology (MATH) domain. This domain is hugely expanded in the nematode C. elegans. Length = 116

>gnl|CDD|239744 cd03775, MATH_Ubp21p, Ubiquitin-specific protease 21 (Ubp21p) family, MATH domain; composed of fungal proteins with similarity to Ubp21p of fission yeast

 Score = 51.6 bits (124), Expect = 1e-08
 Identities = 38/137 (27%), Positives = 60/137 (43%), Gaps = 27/137 (19%)

Query: 105 HVWKIENFSKLEAKLYESEVFVAGNQKWKIKLYPKGQGVGRGSHISVYLA----LADLST 160
             W+I+N+S+LE K++ S  F  G  +W+I L+P+G     G  +S+YL       + + 
Sbjct: 3   FTWRIKNWSELEKKVH-SPKFKCGGFEWRILLFPQGNSQTGG--VSIYLEPHPEEEEKAP 59

Query: 161 ITRDSKIYVHFTLRIRDQVLSKHNEKKASTWLSTSSE--------DWGWSTFVELSYFNK 212
           +  D  +   F L     V+S  N    S  LS  +         DWG++ F+EL     
Sbjct: 60  LDEDWSVCAQFAL-----VIS--NPGDPSIQLSNVAHHRFNAEDKDWGFTRFIELRKLAH 112

Query: 213 AEN----GFLMND-VCI 224
                   FL N  + I
Sbjct: 113 RTPDKPSPFLENGELNI 129

Ubp21p is a deubiquitinating enzyme that may be involved in the regulation of the protein kinase Prp4p, which controls the formation of active spliceosomes. Members of this family are similar to human HAUSP (Herpesvirus-associated ubiquitin-specific protease) in that they contain an N-terminal MATH domain and a C-terminal catalytic protease (C19 family) domain. HAUSP is also an ubiquitin-specific protease that specifically catalyzes the deubiquitylation of p53 and MDM2. The MATH domain of HAUSP contains the binding site for p53 and MDM2. Similarly, the MATH domain of members in this family may be involved in substrate binding. Length = 134

>gnl|CDD|238068 cd00121, MATH, MATH (meprin and TRAF-C homology) domain; an independent folding unit with an eight-stranded beta-sandwich structure found in meprins, TRAFs and other proteins

 Score = 50.1 bits (120), Expect = 4e-08
 Identities = 21/78 (26%), Positives = 30/78 (38%), Gaps = 5/78 (6%)

Query: 2   VDTSSLGLGWEVYVIFRLFVLDQNKDEFLILQDAMGKERRFHVLKLEWGFDQFIPLEEFN 61
               S    W V   F L +++QN  + L           F      WGF +FI  ++  
Sbjct: 53  DKGESDLEKWSVRAEFTLKLVNQNGGKSLSKS---FTHVFFSEKGSGWGFPKFISWDDLE 109

Query: 62  DASNGYLVGDTCVFGAEV 79
           D  + YLV D+     EV
Sbjct: 110 D--SYYLVDDSLTIEVEV 125

Meprins comprise a class of extracellular metalloproteases which are anchored to the membrane and are capable of cleaving growth factors, extracellular matrix proteins, and biologically active peptides. TRAF molecules serve as adapter proteins that link cell surface receptors of the Tumor Necrosis Factor and 1nterleukin-1/Toll-like families to downstream kinase cascades, which results in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses in the immune and inflammatory systems. Other members include the ubiquitin ligases, TRIM37 and SPOP, and the ubiquitin-specific proteases, HAUSP and Ubp21p. A large number of uncharacterized members mostly from lineage-specific expansions in C. elegans and rice contain MATH and BTB domains, similar to SPOP. The MATH domain has been shown to bind peptide/protein substrates in TRAFs and HAUSP. It is possible that the MATH domain in other members of this superfamily also interacts with various protein substrates. The TRAF domain may also be involved in the trimerization of TRAFs. Based on homology, it is postulated that the MATH domain in meprins may be involved in its tetramer assembly and that the MATH domain, in general, may take part in diverse modular arrangements defined by adjacent multimerization domains. Length = 126

>gnl|CDD|239742 cd03773, MATH_TRIM37, Tripartite motif containing protein 37 (TRIM37) family, MATH domain; TRIM37 is a peroxisomal protein and is a member of the tripartite motif (TRIM) protein subfamily, also known as the RING-B-box-coiled-coil (RBCC) subfamily of zinc-finger proteins

 Score = 47.8 bits (114), Expect = 3e-07
 Identities = 32/116 (27%), Positives = 49/116 (42%), Gaps = 10/116 (8%)

Query: 106 VWKIENFSKLEAK---LYESEVFVAGNQKWKIKLYPKGQGVGRGSHISVYLALADLSTIT 162
            + +ENFS L      +Y   + V G   W++K+YP G G  RG+ +SV+L L       
Sbjct: 8   TFTLENFSTLRQSADPVYSDPLNVDGL-CWRLKVYPDGNGEVRGNFLSVFLELCSGLGE- 65

Query: 163 RDSKIYVHFTLRIRDQVLSKHNEKKASTWLSTSSEDWGWSTFVELSYFNKAENGFL 218
             SK    + + +  Q     N K+         E WG++ F  L        G+L
Sbjct: 66  -ASKYE--YRVEMVHQANPTKNIKREFASDFEVGECWGYNRFFRLDLL--INEGYL 116

Mutations in the human TRIM37 gene (also known as MUL) cause Mulibrey (muscle-liver-brain-eye) nanism, a rare growth disorder of prenatal onset characterized by dysmorphic features, pericardial constriction and hepatomegaly. TRIM37, similar to other TRIMs, contains a cysteine-rich, zinc-binding RING-finger domain followed by another cysteine-rich zinc-binding domain, the B-box, and a coiled-coil domain. TRIM37 is autoubiquitinated in a RING domain-dependent manner, indicating that it functions as an ubiquitin E3 ligase. In addition to the tripartite motif, TRIM37 also contains a MATH domain C-terminal to the coiled-coil domain. The MATH domain of TRIM37 has been shown to interact with the TRAF domain of six known TRAFs in vitro, however, it is unclear whether this is physiologically relevant. Eleven TRIM37 mutations have been associated with Mulibrey nanism so far. One mutation, Gly322Val, is located in the MATH domain and is the only mutation that does not affect the length of the protein. It results in the incorrect subcellular localization of TRIM37. Length = 132

>gnl|CDD|227409 COG5077, COG5077, Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]

 Score = 44.9 bits (106), Expect = 2e-05
 Identities = 31/122 (25%), Positives = 50/122 (40%), Gaps = 14/122 (11%)

Query: 93  FLAKLTSASNYKHVWKIENFSKLEAKLYESEVFVAGNQKWKIKLYPKGQGVGRGSHISVY 152
           F   +         WK++ +S+L  K  ES  F  G   WKI L+P+G       ++SVY
Sbjct: 29  FDPDVEELLEMSFTWKVKRWSELAKK-VESPPFSVGGHTWKIILFPQGN---NQCNVSVY 84

Query: 153 LAL----ADLSTITRDSKIYVHFTLRI---RDQVLSKHNEKKASTWLSTSSEDWGWSTFV 205
           L       + +   +       F   I   +   +   N  K+    S  S DWG++ F+
Sbjct: 85  LEYEPQELEETG-GKYYDCCAQFAFDISNPKYPTIEYIN--KSHHRFSMESTDWGFTNFI 141

Query: 206 EL 207
           +L
Sbjct: 142 DL 143

Length = 1089

>gnl|CDD|216189 pfam00917, MATH, MATH domain

 Score = 38.4 bits (90), Expect = 4e-04
 Identities = 18/73 (24%), Positives = 28/73 (38%), Gaps = 12/73 (16%)

Query: 9   LGWEVYVIFRLFVLDQN--KDEFLILQDAMGKERRFHVLKLEWGFDQFIPLEEFNDASNG 66
           LGW +   F L ++  N              K          +G+ +FI  ++     N 
Sbjct: 52  LGWSIETEFTLKLVSDNGKSLTKRNKSHVFTKP-------TGYGWGKFISWDDLE---ND 101

Query: 67  YLVGDTCVFGAEV 79
           Y+V DT +  AEV
Sbjct: 102 YVVDDTIIIEAEV 114

This motif has been called the Meprin And TRAF-Homology (MATH) domain. This domain is hugely expanded in the nematode C. elegans. Length = 116

>gnl|CDD|239741 cd03772, MATH_HAUSP, Herpesvirus-associated ubiquitin-specific protease (HAUSP, also known as USP7) family, N-terminal MATH (TRAF-like) domain; composed of proteins similar to human HAUSP, an enzyme that specifically catalyzes the deubiquitylation of p53 and MDM2, hence playing an important role in the p53-MDM2 pathway

 Score = 37.8 bits (88), Expect = 0.001
 Identities = 36/137 (26%), Positives = 48/137 (35%), Gaps = 31/137 (22%)

Query: 109 IENFSKLEAKLYESEVFVAGNQKWKIKLYPKGQGVGRGSHISV--YL------------- 153
           +E FS+L   +     FV  N  WKI + P+          SV  +L             
Sbjct: 9   VERFSRLSESVLSPPCFVR-NLPWKIMVMPRNYPDRNPHQKSVGFFLQCNAESDSTSWSC 67

Query: 154 -ALADLSTITRDSKIYVHFTLRIRDQVLSKHNEKKASTWLSTSSEDWGWSTFVELSYFNK 212
            A A L  I         F+ RI     SK N             DWG+S F+  S    
Sbjct: 68  HAQAVLRIINYKDDE-PSFSRRISHLFFSKEN-------------DWGFSNFMTWSEVTD 113

Query: 213 AENGFLMNDVCIVEAEV 229
            E GF+ +D   +E  V
Sbjct: 114 PEKGFIEDDTITLEVYV 130

It contains an N-terminal TRAF-like domain and a C-terminal catalytic protease (C19 family) domain. The tumor suppressor p53 protein is a transcription factor that responds to many cellular stress signals and is regulated primarily through ubiquitylation and subsequent degradation. MDM2 is a RING-finger E3 ubiquitin ligase that promotes p53 ubiquitinylation. p53 and MDM2 bind to the same site in the N-terminal TRAF-like domain of HAUSP in a mutually exclusive manner. HAUSP also interacts with the Epstein-Barr nuclear antigen 1 (EBNA1) protein of the Epstein-Barr virus (EBV), which efficiently immortalizes infected cells predisposing the host to a variety of cancers. EBNA1 plays several important roles in EBV latent infection and cellular transformation. It binds the same pocket as p53 in the HAUSP TRAF-like domain. Through interactions with p53, MDM2 and EBNA1, HAUSP plays a role in cell proliferation, apoptosis and EBV-mediated immortalization. Length = 137

>gnl|CDD|239743 cd03774, MATH_SPOP, Speckle-type POZ protein (SPOP) family, MATH domain; composed of proteins with similarity to human SPOP

 Score = 37.1 bits (86), Expect = 0.002
 Identities = 29/126 (23%), Positives = 52/126 (41%), Gaps = 11/126 (8%)

Query: 103 YKHVWKIENFSKLEAKLYE---SEVFVAGNQ---KWKIKLYPKGQGVGRGSHISVYLALA 156
           + ++W I NFS    ++ E   S  F +G     KW +++ PKG       ++S+YL L 
Sbjct: 5   FCYMWTISNFSFCREEMGEVIKSSTFSSGANDKLKWCLRVNPKGLDEESKDYLSLYLLLV 64

Query: 157 DLSTITRDSKIYVHFTLRIRDQVLSKHN-EKKASTWLSTSSEDWGWSTFVELSYFNKAEN 215
                   S++   F   I +    +    +    +     +DWG+  F+   +     N
Sbjct: 65  SCP----KSEVRAKFKFSILNAKGEETKAMESQRAYRFVQGKDWGFKKFIRRDFLLDEAN 120

Query: 216 GFLMND 221
           G L +D
Sbjct: 121 GLLPDD 126

SPOP was isolated as a novel antigen recognized by serum from a scleroderma patient, whose overexpression in COS cells results in a discrete speckled pattern in the nuclei. It contains an N-terminal MATH domain and a C-terminal BTB (also called POZ) domain. Together with Cul3, SPOP constitutes an ubiquitin E3 ligase which is able to ubiquitinate the PcG protein BMI1, the variant histone macroH2A1 and the death domain-associated protein Daxx. Therefore, SPOP may be involved in the regulation of these proteins and may play a role in transcriptional regulation, apoptosis and X-chromosome inactivation. Cul3 binds to the BTB domain of SPOP whereas Daxx and the macroH2A1 nonhistone region have been shown to bind to the MATH domain. Both MATH and BTB domains are necessary for the nuclear speckled accumulation of SPOP. There are many proteins, mostly uncharacterized, containing both MATH and BTB domains from C. elegans and plants which are excluded from this family. Length = 139

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	236
cd03772	137	MATH_HAUSP Herpesvirus-associated ubiquitin-specif	99.97
cd03775	134	MATH_Ubp21p Ubiquitin-specific protease 21 (Ubp21p	99.96
cd03774	139	MATH_SPOP Speckle-type POZ protein (SPOP) family,	99.95
cd03773	132	MATH_TRIM37 Tripartite motif containing protein 37	99.94
cd00270	149	MATH_TRAF_C Tumor Necrosis Factor Receptor (TNFR)-	99.93
cd03780	148	MATH_TRAF5 Tumor Necrosis Factor Receptor (TNFR)-A	99.92
cd00121	126	MATH MATH (meprin and TRAF-C homology) domain; an	99.92
cd03779	147	MATH_TRAF1 Tumor Necrosis Factor Receptor (TNFR) A	99.91
cd03776	147	MATH_TRAF6 Tumor Necrosis Factor Receptor (TNFR)-A	99.91
cd03781	154	MATH_TRAF4 Tumor Necrosis Factor Receptor (TNFR)-A	99.91
cd03778	164	MATH_TRAF2 Tumor Necrosis Factor Receptor (TNFR) A	99.91
cd03777	186	MATH_TRAF3 Tumor Necrosis Factor Receptor (TNFR)-A	99.91
cd03771	167	MATH_Meprin Meprin family, MATH domain; Meprins ar	99.91
PF00917	119	MATH: MATH domain; InterPro: IPR002083 Although ap	99.89
smart00061	95	MATH meprin and TRAF homology.	99.78
cd03783	167	MATH_Meprin_Alpha Meprin family, Alpha subunit, MA	99.75
cd03782	167	MATH_Meprin_Beta Meprin family, Beta subunit, MATH	99.73
COG5077	1089	Ubiquitin carboxyl-terminal hydrolase [Posttransla	99.57
cd03772	137	MATH_HAUSP Herpesvirus-associated ubiquitin-specif	99.5
cd03775	134	MATH_Ubp21p Ubiquitin-specific protease 21 (Ubp21p	99.47
cd03774	139	MATH_SPOP Speckle-type POZ protein (SPOP) family,	99.16
PF00917	119	MATH: MATH domain; InterPro: IPR002083 Although ap	99.01
cd03773	132	MATH_TRIM37 Tripartite motif containing protein 37	98.84
cd00270	149	MATH_TRAF_C Tumor Necrosis Factor Receptor (TNFR)-	98.81
cd00121	126	MATH MATH (meprin and TRAF-C homology) domain; an	98.8
KOG1987	297	consensus Speckle-type POZ protein SPOP and relate	98.8
KOG1987	297	consensus Speckle-type POZ protein SPOP and relate	98.77
COG5077	1089	Ubiquitin carboxyl-terminal hydrolase [Posttransla	98.68
cd03779	147	MATH_TRAF1 Tumor Necrosis Factor Receptor (TNFR) A	98.6
cd03776	147	MATH_TRAF6 Tumor Necrosis Factor Receptor (TNFR)-A	98.55
cd03780	148	MATH_TRAF5 Tumor Necrosis Factor Receptor (TNFR)-A	98.51
KOG1863	1093	consensus Ubiquitin carboxyl-terminal hydrolase [P	98.45
cd03781	154	MATH_TRAF4 Tumor Necrosis Factor Receptor (TNFR)-A	98.36
cd03778	164	MATH_TRAF2 Tumor Necrosis Factor Receptor (TNFR) A	98.33
cd03777	186	MATH_TRAF3 Tumor Necrosis Factor Receptor (TNFR)-A	98.13
cd03771	167	MATH_Meprin Meprin family, MATH domain; Meprins ar	97.91
smart00061	95	MATH meprin and TRAF homology.	97.69
KOG1863	1093	consensus Ubiquitin carboxyl-terminal hydrolase [P	97.05
cd03783	167	MATH_Meprin_Alpha Meprin family, Alpha subunit, MA	96.82
KOG0297	391	consensus TNF receptor-associated factor [Signal t	96.51
cd03782	167	MATH_Meprin_Beta Meprin family, Beta subunit, MATH	96.28

>cd03772 MATH_HAUSP Herpesvirus-associated ubiquitin-specific protease (HAUSP, also known as USP7) family, N-terminal MATH (TRAF-like) domain; composed of proteins similar to human HAUSP, an enzyme that specifically catalyzes the deubiquitylation of p53 and MDM2, hence playing an important role in the p53-MDM2 pathway

Probab=99.97  E-value=3.5e-29  Score=190.50  Aligned_cols=129  Identities=22%  Similarity=0.309  Sum_probs=109.9

Q ss_pred             CCeEEEEEcccccccCceeecccEEeCCeEEEEEEecCCCCC--CCCceEEEEEEecCCCCCCCCCeEEEEEEEEEEeCC
Q 026621          102 NYKHVWKIENFSKLEAKLYESEVFVAGNQKWKIKLYPKGQGV--GRGSHISVYLALADLSTITRDSKIYVHFTLRIRDQV  179 (236)
Q Consensus       102 ~~~~~w~I~nfs~l~~~~~~S~~f~~gg~~W~l~~yp~G~~~--~~~~~lsiyL~~~~~~~~~~~w~~~~~f~l~l~n~~  179 (236)
                      .++++|+|+|||.+ ++.++|++|.+||++|+|++||+|...  +..++||+||.|.+.. ....|++.|+|+|+|+||.
T Consensus         2 ~~~~~~~I~~~S~l-~e~~~S~~f~vgG~~W~i~~~P~g~~~~~~~~~~lsvyL~~~~~~-~~~~w~i~a~~~~~l~~~~   79 (137)
T cd03772           2 EATFSFTVERFSRL-SESVLSPPCFVRNLPWKIMVMPRNYPDRNPHQKSVGFFLQCNAES-DSTSWSCHAQAVLRIINYK   79 (137)
T ss_pred             CcEEEEEECCcccC-CCcEECCCEEECCcceEEEEEeCCCCCCCCCCCeEEEEEeeCCcC-CCCCCeEEEEEEEEEEcCC
Confidence            46899999999999 678999999999999999999999654  2358999999997643 3348999999999999998


Q ss_pred             CC-cceeeeceeeecCCCCCCchhccccccccccCCCCceECCEEEEEEEEEEE
Q 026621          180 LS-KHNEKKASTWLSTSSEDWGWSTFVELSYFNKAENGFLMNDVCIVEAEVLRI  232 (236)
Q Consensus       180 ~~-~~~~~~~~~~F~~~~~~~G~~~Fi~~~~L~~~~~gyl~~D~l~ie~~v~v~  232 (236)
                      ++ .+......+.|+.....|||++||+|++|+++++|||+||+|+|||+|+|=
T Consensus        80 ~~~~~~~~~~~~~f~~~~~~~G~~~fi~~~~L~~~~sgyl~~D~l~Ie~~V~~~  133 (137)
T cd03772          80 DDEPSFSRRISHLFFSKENDWGFSNFMTWSEVTDPEKGFIEDDTITLEVYVQAD  133 (137)
T ss_pred             CCcccEEEeeeeEEcCCCCCccchheeEHHHhcCCCCCcEECCEEEEEEEEEee
Confidence            53 344445557897666799999999999998777899999999999999874

It contains an N-terminal TRAF-like domain and a C-terminal catalytic protease (C19 family) domain. The tumor suppressor p53 protein is a transcription factor that responds to many cellular stress signals and is regulated primarily through ubiquitylation and subsequent degradation. MDM2 is a RING-finger E3 ubiquitin ligase that promotes p53 ubiquitinylation. p53 and MDM2 bind to the same site in the N-terminal TRAF-like domain of HAUSP in a mutually exclusive manner. HAUSP also interacts with the Epstein-Barr nuclear antigen 1 (EBNA1) protein of the Epstein-Barr virus (EBV), which efficiently immortalizes infected cells predisposing the host to a variety of cancers. EBNA1

>cd03775 MATH_Ubp21p Ubiquitin-specific protease 21 (Ubp21p) family, MATH domain; composed of fungal proteins with similarity to Ubp21p of fission yeast

Probab=99.96  E-value=2.4e-28  Score=185.23  Aligned_cols=124  Identities=26%  Similarity=0.481  Sum_probs=106.7

Q ss_pred             eEEEEEcccccccCceeecccEEeCCeEEEEEEecCCCCCCCCceEEEEEEecCCCC----CCCCCeEEEEEEEEEEeCC
Q 026621          104 KHVWKIENFSKLEAKLYESEVFVAGNQKWKIKLYPKGQGVGRGSHISVYLALADLST----ITRDSKIYVHFTLRIRDQV  179 (236)
Q Consensus       104 ~~~w~I~nfs~l~~~~~~S~~f~~gg~~W~l~~yp~G~~~~~~~~lsiyL~~~~~~~----~~~~w~~~~~f~l~l~n~~  179 (236)
                      +|+|+|.|||.+ ++.+.|++|.+||++|+|.+||+|+..  .+|+|+||.+.+.+.    .+.+|+++|+|+|+|+||.
T Consensus         2 ~f~w~I~~fS~~-~~~~~S~~F~vGG~~W~l~~yP~G~~~--~~~iSlyL~l~~~~~~~~~~~~~~~v~a~f~~~l~n~~   78 (134)
T cd03775           2 SFTWRIKNWSEL-EKKVHSPKFKCGGFEWRILLFPQGNSQ--TGGVSIYLEPHPEEEEKAPLDEDWSVCAQFALVISNPG   78 (134)
T ss_pred             cEEEEECCcccC-CcceeCCCEEECCeeEEEEEeCCCCCC--CCeEEEEEEecCcccccccCCCCCeEEEEEEEEEEcCC
Confidence            599999999997 478999999999999999999999865  589999999976543    2568999999999999997


Q ss_pred             CCc-ceeeeceeeecCCCCCCchhccccccccccC----CCCceECCEEEEEEEEE
Q 026621          180 LSK-HNEKKASTWLSTSSEDWGWSTFVELSYFNKA----ENGFLMNDVCIVEAEVL  230 (236)
Q Consensus       180 ~~~-~~~~~~~~~F~~~~~~~G~~~Fi~~~~L~~~----~~gyl~~D~l~ie~~v~  230 (236)
                      ++. +......++|+....+|||.+||++++|++|    +.|||+||+|+|+|.|.
T Consensus        79 ~~~~~~~~~~~~~F~~~~~~wG~~~fi~~~~L~~~~~~~~~g~l~nD~l~I~~~~~  134 (134)
T cd03775          79 DPSIQLSNVAHHRFNAEDKDWGFTRFIELRKLAHRTPDKPSPFLENGELNITVYVR  134 (134)
T ss_pred             CCccceEccceeEeCCCCCCCChhHcccHHHHcccccCCCCceeECCEEEEEEEEC
Confidence            653 3444557899877789999999999999965    57999999999999874

Ubp21p is a deubiquitinating enzyme that may be involved in the regulation of the protein kinase Prp4p, which controls the formation of active spliceosomes. Members of this family are similar to human HAUSP (Herpesvirus-associated ubiquitin-specific protease) in that they contain an N-terminal MATH domain and a C-terminal catalytic protease (C19 family) domain. HAUSP is also an ubiquitin-specific protease that specifically catalyzes the deubiquitylation of p53 and MDM2. The MATH domain of HAUSP contains the binding site for p53 and MDM2. Similarly, the MATH domain of members in this family may be involved in substrate binding.

>cd03774 MATH_SPOP Speckle-type POZ protein (SPOP) family, MATH domain; composed of proteins with similarity to human SPOP

Probab=99.95  E-value=4.5e-27  Score=179.34  Aligned_cols=129  Identities=24%  Similarity=0.477  Sum_probs=107.6

Q ss_pred             CCCCeEEEEEccccccc---CceeecccEEeCCe---EEEEEEecCCCCCCCCceEEEEEEecCCCCCCCCCeEEEEEEE
Q 026621          100 ASNYKHVWKIENFSKLE---AKLYESEVFVAGNQ---KWKIKLYPKGQGVGRGSHISVYLALADLSTITRDSKIYVHFTL  173 (236)
Q Consensus       100 ~~~~~~~w~I~nfs~l~---~~~~~S~~f~~gg~---~W~l~~yp~G~~~~~~~~lsiyL~~~~~~~~~~~w~~~~~f~l  173 (236)
                      +...+|+|+|+|||.+.   ++.+.|++|.+||+   +|+|++||+|...+..+|+|+||++.+.+    .++++|+|+|
T Consensus         2 ~~~~~~~w~I~~fS~~~~~~~~~i~S~~F~vgg~~~~~W~l~~yP~G~~~~~~~~iSlyL~l~~~~----~~~v~a~f~~   77 (139)
T cd03774           2 VVKFCYMWTISNFSFCREEMGEVIKSSTFSSGANDKLKWCLRVNPKGLDEESKDYLSLYLLLVSCP----KSEVRAKFKF   77 (139)
T ss_pred             ceEEEEEEEECCchhhhhcCCCEEECCCeecCCcCCceEEEEEeCCCCCCCCCCeEEEEEEEccCC----CCcEEEEEEE
Confidence            34568999999999874   67899999999984   99999999998765678999999997532    4579999999


Q ss_pred             EEEeCCCCcce--eeeceeeecCCCCCCchhccccccccccCCCCceECCEEEEEEEEEEEE
Q 026621          174 RIRDQVLSKHN--EKKASTWLSTSSEDWGWSTFVELSYFNKAENGFLMNDVCIVEAEVLRIS  233 (236)
Q Consensus       174 ~l~n~~~~~~~--~~~~~~~F~~~~~~~G~~~Fi~~~~L~~~~~gyl~~D~l~ie~~v~v~~  233 (236)
                      .|+||.+....  .....+.|.. ..+|||.+||++++|+++.+|||+||+|+|+|+|+|++
T Consensus        78 ~l~n~~~~~~~~~~~~~~~~f~~-~~~wG~~~fi~~~~L~~~~~g~l~dD~l~I~c~I~V~~  138 (139)
T cd03774          78 SILNAKGEETKAMESQRAYRFVQ-GKDWGFKKFIRRDFLLDEANGLLPDDKLTLFCEVSVVQ  138 (139)
T ss_pred             EEEecCCCeeeeecccCcEeCCC-CCccCHHHeeeHHHhhhhhcccccCCEEEEEEEEEEEc
Confidence            99999876432  2223466754 57899999999999987778999999999999999986

SPOP was isolated as a novel antigen recognized by serum from a scleroderma patient, whose overexpression in COS cells results in a discrete speckled pattern in the nuclei. It contains an N-terminal MATH domain and a C-terminal BTB (also called POZ) domain. Together with Cul3, SPOP constitutes an ubiquitin E3 ligase which is able to ubiquitinate the PcG protein BMI1, the variant histone macroH2A1 and the death domain-associated protein Daxx. Therefore, SPOP may be involved in the regulation of these proteins and may play a role in transcriptional regulation, apoptosis and X-chromosome inactivation. Cul3 binds to the BTB domain of SPOP whereas Daxx and the macroH2A1 nonhistone region have been shown to bind to the MATH domain. Both MATH and BTB domains are necessary for the nuclear speckled accumulation of SPOP. There are many proteins, mostly uncharacterized, conta

>cd03773 MATH_TRIM37 Tripartite motif containing protein 37 (TRIM37) family, MATH domain; TRIM37 is a peroxisomal protein and is a member of the tripartite motif (TRIM) protein subfamily, also known as the RING-B-box-coiled-coil (RBCC) subfamily of zinc-finger proteins

Probab=99.94  E-value=4.5e-26  Score=172.25  Aligned_cols=124  Identities=25%  Similarity=0.460  Sum_probs=104.3

Q ss_pred             CCCCeEEEEEccccccc--CceeecccEEeCCeEEEEEEecCCCCCCCCceEEEEEEecCCCCCCCCCeEEEEEEEEEEe
Q 026621          100 ASNYKHVWKIENFSKLE--AKLYESEVFVAGNQKWKIKLYPKGQGVGRGSHISVYLALADLSTITRDSKIYVHFTLRIRD  177 (236)
Q Consensus       100 ~~~~~~~w~I~nfs~l~--~~~~~S~~f~~gg~~W~l~~yp~G~~~~~~~~lsiyL~~~~~~~~~~~w~~~~~f~l~l~n  177 (236)
                      +...+++|+|.|||.+.  ++.+.|++|.+||++|+|++||+|...+.++|||+||.+.+.    ..|.+.++|+|+|+|
T Consensus         2 ~~~~~~~~~I~~fS~~~~~~~~~~S~~F~vgG~~W~i~~yP~G~~~~~~~~lSl~L~l~~~----~~~~~~~~~~l~lln   77 (132)
T cd03773           2 PPYDSATFTLENFSTLRQSADPVYSDPLNVDGLCWRLKVYPDGNGEVRGNFLSVFLELCSG----LGEASKYEYRVEMVH   77 (132)
T ss_pred             CCCcccEEEECChhhhhcCCcceeCCCeEeCCccEEEEEECCCCCCCCCCEEEEEEEeecC----CCCceeEEEEEEEEc
Confidence            45678999999999985  578999999999999999999999876667899999998763    246788999999999


Q ss_pred             CCC-CcceeeeceeeecCCCCCCchhccccccccccCCCCceEC--CEEEEEEEEE
Q 026621          178 QVL-SKHNEKKASTWLSTSSEDWGWSTFVELSYFNKAENGFLMN--DVCIVEAEVL  230 (236)
Q Consensus       178 ~~~-~~~~~~~~~~~F~~~~~~~G~~~Fi~~~~L~~~~~gyl~~--D~l~ie~~v~  230 (236)
                      |.+ ..+......+.|.. ..+|||.+|+++++|++  +|||+|  |+|+|+|.|+
T Consensus        78 q~~~~~~~~~~~~~~f~~-~~~wG~~~Fi~~~~L~~--~gfl~~~~D~l~i~~~v~  130 (132)
T cd03773          78 QANPTKNIKREFASDFEV-GECWGYNRFFRLDLLIN--EGYLLPENDTLILRFSVR  130 (132)
T ss_pred             CCCCccceEEeccccccC-CCCcCHHHhccHHHHhh--CCCcCCCCCEEEEEEEEe
Confidence            953 34555555677865 46799999999999986  699999  9999999985

Mutations in the human TRIM37 gene (also known as MUL) cause Mulibrey (muscle-liver-brain-eye) nanism, a rare growth disorder of prenatal onset characterized by dysmorphic features, pericardial constriction and hepatomegaly. TRIM37, similar to other TRIMs, contains a cysteine-rich, zinc-binding RING-finger domain followed by another cysteine-rich zinc-binding domain, the B-box, and a coiled-coil domain. TRIM37 is autoubiquitinated in a RING domain-dependent manner, indicating that it functions as an ubiquitin E3 ligase. In addition to the tripartite motif, TRIM37 also contains a MATH domain C-terminal to the coiled-coil domain. The MATH domain of TRIM37 has been shown to interact with the TRAF domain of six known TRAFs i

>cd00270 MATH_TRAF_C Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF domain, C-terminal MATH subdomain; TRAF molecules serve as adapter proteins that link cell surface TNFRs and receptors of the interleukin-1/Toll-like family to downstream kinase signaling cascades which results in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses in the immune and inflammatory systems

Probab=99.93  E-value=3e-25  Score=171.15  Aligned_cols=126  Identities=24%  Similarity=0.410  Sum_probs=102.6

Q ss_pred             CeEEEEEccccccc-------CceeecccEEeC--CeEEEEEEecCCCCCCCCceEEEEEEecCCCCC-CCCCeEEEEEE
Q 026621          103 YKHVWKIENFSKLE-------AKLYESEVFVAG--NQKWKIKLYPKGQGVGRGSHISVYLALADLSTI-TRDSKIYVHFT  172 (236)
Q Consensus       103 ~~~~w~I~nfs~l~-------~~~~~S~~f~~g--g~~W~l~~yp~G~~~~~~~~lsiyL~~~~~~~~-~~~w~~~~~f~  172 (236)
                      ++|+|+|.|||.++       ++.++|++|.+|  |++|+|++||+|...+.++|||+||++.+++.. ...|++.++|+
T Consensus         1 g~~~w~I~~fs~~~~~~~~~~~~~~~S~~F~vg~~G~~w~i~~yP~G~~~~~~~~lsl~L~l~~~~~d~~~~w~~~~~~~   80 (149)
T cd00270           1 GVLIWKIKDYSRKLQEAVAGSNTVLYSPPFYTSRYGYKLCLRLYLNGDGTGKGTHLSLFVHVMKGEYDALLEWPFRGKIT   80 (149)
T ss_pred             CEEEEEECCHHHHHHHHhcCCCceEECCCcccCCCCceEEEEEEeCCCCCCCCCEEEEEEEEeccCCCccccCCccceEE
Confidence            47999999999974       358999999999  999999999999876567899999999876542 46799999999


Q ss_pred             EEEEeCCCC---cceeee-----ceeeec-----CCCCCCchhccccccccccCCCCceECCEEEEEEEEE
Q 026621          173 LRIRDQVLS---KHNEKK-----ASTWLS-----TSSEDWGWSTFVELSYFNKAENGFLMNDVCIVEAEVL  230 (236)
Q Consensus       173 l~l~n~~~~---~~~~~~-----~~~~F~-----~~~~~~G~~~Fi~~~~L~~~~~gyl~~D~l~ie~~v~  230 (236)
                      |.|+||.++   .+....     ....|.     ....+|||.+||++++|++  .|||+||+|+|+|+|.
T Consensus        81 ~~l~d~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~G~~~fi~~~~L~~--~gfl~dD~l~I~~~v~  149 (149)
T cd00270          81 LTLLDQSDDSKRKHITETFMPDPNSSAFQRPPTGENNIGFGYPEFVPLEKLES--RGYVKDDTLFIKVEVD  149 (149)
T ss_pred             EEEECCCCccccCceEEEEEcCCchHhhcCCCcccCCCCcCcceEeEHHHhcc--CCCEeCCEEEEEEEEC
Confidence            999999874   232221     123453     1357899999999999986  4899999999999983

There are at least six mammalian and three Drosophila proteins containing TRAF domains. The mammalian TRAFs display varying expression profiles, indicating independent and cell type-specific regulation. They display distinct, as well as overlapping functions and interactions with receptors. Most TRAFs, except TRAF1, share N-terminal homology and contain a RING domain, multiple zinc finger domains, and a TRAF domain. TRAFs form homo- and heterotrimers through its TRAF domain. The TRAF domain can be divided into a more divergent N-ter

>cd03780 MATH_TRAF5 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF5 subfamily, TRAF domain, C-terminal MATH subdomain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses

Probab=99.92  E-value=1.9e-24  Score=165.66  Aligned_cols=127  Identities=23%  Similarity=0.321  Sum_probs=104.3

Q ss_pred             CeEEEEEccccccc-----Cc--eeecccE--EeCCeEEEEEEecCCCCCCCCceEEEEEEecCCCCC-CCCCeEEEEEE
Q 026621          103 YKHVWKIENFSKLE-----AK--LYESEVF--VAGNQKWKIKLYPKGQGVGRGSHISVYLALADLSTI-TRDSKIYVHFT  172 (236)
Q Consensus       103 ~~~~w~I~nfs~l~-----~~--~~~S~~f--~~gg~~W~l~~yp~G~~~~~~~~lsiyL~~~~~~~~-~~~w~~~~~f~  172 (236)
                      +.+.|+|.|||.++     ++  .+.|++|  .++||+|+|++||+|.+.+.++|+|+||++++++.+ -..|++.++++
T Consensus         1 g~~vwkI~~ys~~~~~~~~g~~~~i~S~~Fyt~~~Gy~w~i~~ypnG~~~~~~~~iSv~l~l~~g~~D~~l~wp~~~~~t   80 (148)
T cd03780           1 GKLIWKVTDYKMKKKEAVDGHTVSIFSQPFYTSRCGYRLCARAYLNGDGSGKGTHLSLYFVVMRGEFDSLLQWPFRQRVT   80 (148)
T ss_pred             CEEEEEECCHHHHHHhhcCCCccEEECCCcccCCCCeeEEEEEEcCCCCCCCCCEEEEEEEEecCccccccCcceEEEEE
Confidence            57899999999975     34  7999999  899999999999999987778899999999976543 35799999999


Q ss_pred             EEEEeCCCCc-ce--eee---ceeeecCC----CCCCchhccccccccccCCCCceECCEEEEEEEE
Q 026621          173 LRIRDQVLSK-HN--EKK---ASTWLSTS----SEDWGWSTFVELSYFNKAENGFLMNDVCIVEAEV  229 (236)
Q Consensus       173 l~l~n~~~~~-~~--~~~---~~~~F~~~----~~~~G~~~Fi~~~~L~~~~~gyl~~D~l~ie~~v  229 (236)
                      |.|++|.+.. ++  +..   ....|...    +..||+++||++++|+..+.+||.||+++|+|.|
T Consensus        81 fsLlDq~~~~~~~~~~~~~~~~~~~F~rp~~~~n~~~G~~~Fi~~~~Le~s~~~ylkdD~~~Ik~~v  147 (148)
T cd03780          81 LMLLDQSGKKNHIMETFKADPNSSSFKRPDGEMNIASGCPRFVAHSVLENAKNTYIKDDTLFLKVAV  147 (148)
T ss_pred             EEEECCCCCCCCcceeeecCCccccccCCCCCCCCCcChhheeEHHHhhcccCCcCcCCEEEEEEEE
Confidence            9999997542 21  111   13557543    4579999999999998744699999999999987

TRAF5 was identified as an activator of nuclear factor-kappaB and a regulator of lymphotoxin-beta receptor and CD40 signaling. Its interaction with CD40 is indirect, involving hetero-oligomerization with TRAF3. In addition, TRAF5 has been shown to associate with other TNFRs including CD27, CD30, OX40 and GITR (glucocorticoid-induced TNFR). It plays a role in modulating Th2 immune responses (driven by OX40 costimulation) and T-cell activation (triggered by GITR). It is also involved in osteoclastogenesis. TRAF5 contains a RING finger domain, five zinc finger domains, and a TRAF domain. The TRAF domain can be divided into a more dive

>cd00121 MATH MATH (meprin and TRAF-C homology) domain; an independent folding unit with an eight-stranded beta-sandwich structure found in meprins, TRAFs and other proteins

Probab=99.92  E-value=1.1e-23  Score=156.33  Aligned_cols=125  Identities=31%  Similarity=0.546  Sum_probs=105.0

Q ss_pred             CeEEEEEcccccccCceeecccEEeCCeEEEEEEecCCCCCCCCceEEEEEEecCCCCCCCCCeEEEEEEEEEEeCCCCc
Q 026621          103 YKHVWKIENFSKLEAKLYESEVFVAGNQKWKIKLYPKGQGVGRGSHISVYLALADLSTITRDSKIYVHFTLRIRDQVLSK  182 (236)
Q Consensus       103 ~~~~w~I~nfs~l~~~~~~S~~f~~gg~~W~l~~yp~G~~~~~~~~lsiyL~~~~~~~~~~~w~~~~~f~l~l~n~~~~~  182 (236)
                      ++++|+|.+|+...++.++|+.|.++|++|+|.+||+|... ..++|||||+|.+.......|++.++|+|+|+++.+.+
T Consensus         1 ~~~~~~i~~~~~~~~~~~~S~~f~~~g~~W~l~~~p~~~~~-~~~~lsv~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~   79 (126)
T cd00121           1 GKHTWKIVNFSELEGESIYSPPFEVGGYKWRIRIYPNGDGE-SGDYLSLYLELDKGESDLEKWSVRAEFTLKLVNQNGGK   79 (126)
T ss_pred             CEEEEEECCCCCCCCcEEECCCEEEcCEeEEEEEEcCCCCC-CCCEEEEEEEecCCCCCCCCCcEEEEEEEEEECCCCCc
Confidence            36899999999966788999999999999999999999765 46799999999876544467999999999999998555


Q ss_pred             ceeeeceeeec-CCCCCCchhccccccccccCCCCceECCEEEEEEEEE
Q 026621          183 HNEKKASTWLS-TSSEDWGWSTFVELSYFNKAENGFLMNDVCIVEAEVL  230 (236)
Q Consensus       183 ~~~~~~~~~F~-~~~~~~G~~~Fi~~~~L~~~~~gyl~~D~l~ie~~v~  230 (236)
                      +........|. ....+|||.+||++++|+++  ++++||+|+|+|+|.
T Consensus        80 ~~~~~~~~~~~~~~~~~~G~~~fi~~~~l~~~--~~~~~d~l~i~~~v~  126 (126)
T cd00121          80 SLSKSFTHVFFSEKGSGWGFPKFISWDDLEDS--YYLVDDSLTIEVEVK  126 (126)
T ss_pred             cceEeccCCcCCCCCCCCChHHeeEHHHhccC--CcEECCEEEEEEEEC
Confidence            55555555553 45689999999999999973  349999999999984

Meprins comprise a class of extracellular metalloproteases which are anchored to the membrane and are capable of cleaving growth factors, extracellular matrix proteins, and biologically active peptides. TRAF molecules serve as adapter proteins that link cell surface receptors of the Tumor Necrosis Factor and 1nterleukin-1/Toll-like families to downstream kinase cascades, which results in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses in the immune and inflammatory systems. Other members include the ubiquitin ligases, TRIM37 and SPOP, and the ubiquitin-specific proteases, HAUSP and Ubp21p. A large number of uncharacterized members mostly from lineage-specific expansions in C. elegans and rice contain MATH and BTB domains, similar to SPOP. The MATH doma

>cd03779 MATH_TRAF1 Tumor Necrosis Factor Receptor (TNFR) Associated Factor (TRAF) family, TRAF1 subfamily, TRAF domain, C-terminal MATH subdomain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses

Probab=99.91  E-value=5.3e-24  Score=162.53  Aligned_cols=127  Identities=20%  Similarity=0.307  Sum_probs=102.2

Q ss_pred             CeEEEEEccccccc-----C--ceeecccEEeC--CeEEEEEEecCCCCCCCCceEEEEEEecCCCC-CCCCCeEEEEEE
Q 026621          103 YKHVWKIENFSKLE-----A--KLYESEVFVAG--NQKWKIKLYPKGQGVGRGSHISVYLALADLST-ITRDSKIYVHFT  172 (236)
Q Consensus       103 ~~~~w~I~nfs~l~-----~--~~~~S~~f~~g--g~~W~l~~yp~G~~~~~~~~lsiyL~~~~~~~-~~~~w~~~~~f~  172 (236)
                      +.+.|+|+||+.+.     +  ..++||.|..+  ||+|+|++||+|.+.+.++|+|+||++.+++. ....|++.++++
T Consensus         1 g~~~W~i~~f~~~~~~a~~~~~~~~~S~~Fyt~~~Gy~w~i~~ypnG~~~~~~~~iSv~l~l~~g~~D~~l~wpv~~~~t   80 (147)
T cd03779           1 GTFLWKITDVSQKQRESSHGRDVSLCSPAFYTAKYGYKVCLRLYLNGDGAGKGTHISLFFVIMKGEYDALLPWPFRHKVT   80 (147)
T ss_pred             CeEEEEECcHHHHHHHHhcCCCceEECCCcccCCCCceEEEEEEcCCCCCCCCCEEEEEEEEecCCcccccCcceEEEEE
Confidence            57899999999753     2  36999999864  99999999999998777889999999997643 234799999999


Q ss_pred             EEEEeCCCCcce--eeec---eeeec----CCCCCCchhccccccccccCCCCceECCEEEEEEEE
Q 026621          173 LRIRDQVLSKHN--EKKA---STWLS----TSSEDWGWSTFVELSYFNKAENGFLMNDVCIVEAEV  229 (236)
Q Consensus       173 l~l~n~~~~~~~--~~~~---~~~F~----~~~~~~G~~~Fi~~~~L~~~~~gyl~~D~l~ie~~v  229 (236)
                      |.|++|.+..+.  ....   .+.|.    ..+..||+++||++++|+....+||.||+++|+|+|
T Consensus        81 fsLlDq~~~~~~~~~~~~~~~~~~F~rP~~~~n~~~G~~~Fi~~~~Le~s~~~ylkDD~~~Irc~V  146 (147)
T cd03779          81 FMLLDQNNREHVIDAFRPDLSSASFQRPVSDMNVASGCPLFFPLKKLQSPKHAYCKDDTIYIKCVV  146 (147)
T ss_pred             EEEECCCCCCCCcEeecCCcccccccCcccCCCCCcchhheeEHHHhcccCCCcEeCCEEEEEEEE
Confidence            999999865432  1111   24586    334579999999999998633489999999999987

TRAF1 expression is the most restricted among the TRAFs. It is found exclusively in activated lymphocytes, dendritic cells and certain epithelia. TRAF1 associates, directly or indirectly through heterodimerization with TRAF2, with the TNFR family receptors TNFR-2, CD30, RANK, CD40 and LMP1, among others. It also binds the intracellular proteins TRADD, TANK, TRIP, RIP1, RIP2 and FLIP. TRAF1 is unique among the TRAFs in that it lacks a RING domain, which is critical for the activation of nuclear factor-kappaB and Jun NH2-terminal kinase. Studies on TRAF1-deficient mice suggest that TRAF1 has a negative regulatory role in TNFR-mediat

>cd03776 MATH_TRAF6 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF6 subfamily, TRAF domain, C-terminal MATH subdomain; composed of proteins with similarity to human TRAF6, including the Drosophila protein DTRAF2

Probab=99.91  E-value=1.5e-24  Score=166.89  Aligned_cols=126  Identities=22%  Similarity=0.271  Sum_probs=101.0

Q ss_pred             CeEEEEEccccccc-----Cc--eeecccEEe--CCeEEEEEEecCCCCCCCCceEEEEEEecCCCC-CCCCCeEEEEEE
Q 026621          103 YKHVWKIENFSKLE-----AK--LYESEVFVA--GNQKWKIKLYPKGQGVGRGSHISVYLALADLST-ITRDSKIYVHFT  172 (236)
Q Consensus       103 ~~~~w~I~nfs~l~-----~~--~~~S~~f~~--gg~~W~l~~yp~G~~~~~~~~lsiyL~~~~~~~-~~~~w~~~~~f~  172 (236)
                      +.|+|+|.|||.++     ++  .+.|++|.+  |||+|+|++||+|...+..+|||+||++.+++. ...+|++.++++
T Consensus         1 g~h~~~I~~yS~~~~~~~~g~~~~i~S~~F~~~~gGy~W~i~~yP~G~~~~~~~~lS~~L~l~~~~~d~~l~wpv~a~~~   80 (147)
T cd03776           1 GIYVWKIKNFSNLRRSMEAGSPVVIHSPGFYTSPPGYKLCARLNLSLPEARCPNYISLFVHLMQGENDSHLDWPFQGTIT   80 (147)
T ss_pred             CEEEEEECCHHHHHHHHhcCCCceEECCCcccCCCCceEEEEEEeCCCCCCCCCEEEEEEEEeccCCCcccCCcccceeE
Confidence            57999999999754     33  488999985  799999999999988766789999999987653 245799999999


Q ss_pred             EEEEeCCCCc-ceee-----eceeeecC-----CCCCCchhccccccccccCCCCceECCEEEEEEEEE
Q 026621          173 LRIRDQVLSK-HNEK-----KASTWLST-----SSEDWGWSTFVELSYFNKAENGFLMNDVCIVEAEVL  230 (236)
Q Consensus       173 l~l~n~~~~~-~~~~-----~~~~~F~~-----~~~~~G~~~Fi~~~~L~~~~~gyl~~D~l~ie~~v~  230 (236)
                      |.|++|.++. ++..     .....|..     .+.+|||.+||++++|+.  .+||+||+++|+|+|.
T Consensus        81 ~~lldq~~~~~~~~~~~~~~~~~~~F~~p~~~~~~~~~G~~~fi~~~~Le~--~~yl~dD~l~I~c~V~  147 (147)
T cd03776          81 LTLLDQSEPRQNIHETMMSKPELLAFQRPTTDRNPKGFGYVEFAHIEDLLQ--RGFVKNDTLLIKIEVN  147 (147)
T ss_pred             EEEECCCcccCccEEEEEcCCChHhhcCCCcCCCCCCeeEceeeEHHHhhh--CCCccCCEEEEEEEEC
Confidence            9999998632 2211     11245652     246799999999999987  5899999999999984

TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF6 is the most divergent in its TRAF domain among the mammalian TRAFs. In addition to mediating TNFR family signaling, it is also an essential signaling molecule of the interleukin-1/Toll-like receptor superfamily. Whereas other TRAF molecules display similar and overlapping TNFR-binding specificities, TRAF6 binds completely different sites on receptors such as CD40 and RANK. TRAF6 serves as a molecular bridge between innate and adaptive immunity and plays a central role in osteoimmunology. DTRAF2, as an activator of nuclear factor-kapp

>cd03781 MATH_TRAF4 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF4 subfamily, TRAF domain, C-terminal MATH subdomain; composed of proteins with similarity to human TRAF4, including the Drosophila protein DTRAF1

Probab=99.91  E-value=5.8e-24  Score=164.73  Aligned_cols=126  Identities=21%  Similarity=0.327  Sum_probs=102.1

Q ss_pred             CeEEEEEccccccc-------CceeecccEEeC--CeEEEEEEecCCCCCCCCceEEEEEEecCCCCCC-CCCeEEEEEE
Q 026621          103 YKHVWKIENFSKLE-------AKLYESEVFVAG--NQKWKIKLYPKGQGVGRGSHISVYLALADLSTIT-RDSKIYVHFT  172 (236)
Q Consensus       103 ~~~~w~I~nfs~l~-------~~~~~S~~f~~g--g~~W~l~~yp~G~~~~~~~~lsiyL~~~~~~~~~-~~w~~~~~f~  172 (236)
                      +.|.|+|.|||.++       ++.+.|++|.+|  ||+|+|++||+|...+..+|+|+||++.+++..+ ..|+++++++
T Consensus         1 g~~~~~I~gys~~~~~~~~~~~~~i~S~~F~vg~~Gy~w~i~~yPnG~~~~~~~~vs~~l~l~~ge~d~~l~wp~~a~~~   80 (154)
T cd03781           1 GTLLWKITDYSRKLQEAKGRDNLELFSPPFYTHRYGYKLQVSAFLNGNGSGEGSHLSVYIRVLPGEYDNLLEWPFSHRIT   80 (154)
T ss_pred             CEEEEEECCHHHHHHHhhcCCCceEECCCeecCCCCEEEEEEEECCCCCCCCCCEEEEEEEEecCCcccccCCceeeEEE
Confidence            57999999999864       257999999999  9999999999998877778999999999865433 4899999999


Q ss_pred             EEEEeCCCC--c---ceeee-----ceeeecC--------CCCCCchhccccccccccCCCCceECCEEEEEEEEE
Q 026621          173 LRIRDQVLS--K---HNEKK-----ASTWLST--------SSEDWGWSTFVELSYFNKAENGFLMNDVCIVEAEVL  230 (236)
Q Consensus       173 l~l~n~~~~--~---~~~~~-----~~~~F~~--------~~~~~G~~~Fi~~~~L~~~~~gyl~~D~l~ie~~v~  230 (236)
                      |+|++|.++  .   ++...     ....|..        .+.+||+.+||++++|+.  .+||+||+++|+|.|.
T Consensus        81 ~~llDq~~~~~~~~~~~~~~~~~~~~~~~F~rp~~~~~~~~~~~~G~~~fi~~~~Le~--~~yl~dD~l~Irc~v~  154 (154)
T cd03781          81 FTLLDQSDPSLSKPQHITETFTPDPTWKNFQKPSASRLDESTLGFGYPKFISHEDLKK--RNYIKDDAIFLRASVE  154 (154)
T ss_pred             EEEECCCCCccccCcceEEEEEcCCchhhhcCCcccccCCCCCccchhHeeEHHHHhh--CCcccCCEEEEEEEeC
Confidence            999999864  1   22111     1233442        345799999999999986  6899999999999873

TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF4 is highly expressed during embryogenesis, especially in the central and peripheral nervous system. Studies using TRAF4-deficient mice show that TRAF4 is required for neurogenesis, as well as the development of the trachea and the axial skeleton. In addition, TRAF4 augments nuclear factor-kappaB activation triggered by GITR (glucocorticoid-induced TNFR), a receptor expressed in T-cells, B-cells and macrophages. It also participates in counteracting the signaling mediated by Toll-like receptors through its association with TRAF6 and TR

>cd03778 MATH_TRAF2 Tumor Necrosis Factor Receptor (TNFR) Associated Factor (TRAF) family, TRAF2 subfamily, TRAF domain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses

Probab=99.91  E-value=9.2e-24  Score=162.99  Aligned_cols=130  Identities=22%  Similarity=0.318  Sum_probs=108.1

Q ss_pred             cCCCCeEEEEEccccccc-----C--ceeecccEEe--CCeEEEEEEecCCCCCCCCceEEEEEEecCCCCCC-CCCeEE
Q 026621           99 SASNYKHVWKIENFSKLE-----A--KLYESEVFVA--GNQKWKIKLYPKGQGVGRGSHISVYLALADLSTIT-RDSKIY  168 (236)
Q Consensus        99 ~~~~~~~~w~I~nfs~l~-----~--~~~~S~~f~~--gg~~W~l~~yp~G~~~~~~~~lsiyL~~~~~~~~~-~~w~~~  168 (236)
                      ....+.++|+|.||+.+.     +  ..++||+|..  +|++|+|++||+|++.+++.|||||+++.+++.++ ..|++.
T Consensus        15 ~~~~g~fiWkI~~fs~~~~~a~~~~~~~i~Sp~Fyt~~~GYk~~l~~ylnG~g~~~g~~LSly~~l~~Ge~D~~L~WPf~   94 (164)
T cd03778          15 STYDGVFIWKISDFARKRQEAVAGRIPAIFSPAFYTSRYGYKMCLRIYLNGDGTGRGTHLSLFFVVMKGPNDALLRWPFN   94 (164)
T ss_pred             cccCCEEEEEECcHHHHHHHHhcCCCceEECCCcccCCCCeEEEEEEEeCCCCCCCCCEEEEEEEEecCCcCcccCCcee
Confidence            455799999999999874     2  3689999974  58999999999999888889999999999998765 799999


Q ss_pred             EEEEEEEEeCCCCcceeeece-----eeec----CCCCCCchhccccccccccCCCCceECCEEEEEEEE
Q 026621          169 VHFTLRIRDQVLSKHNEKKAS-----TWLS----TSSEDWGWSTFVELSYFNKAENGFLMNDVCIVEAEV  229 (236)
Q Consensus       169 ~~f~l~l~n~~~~~~~~~~~~-----~~F~----~~~~~~G~~~Fi~~~~L~~~~~gyl~~D~l~ie~~v  229 (236)
                      .+++|.|+||.++.|+.....     ..|.    ..+.+|||++|+++++|..+ .|||+||+|.|+|.|
T Consensus        95 ~~itl~llDQ~~r~hi~~~~~pd~~~~~f~RP~~~~n~~~G~~~Fv~l~~l~~~-~~Yv~dDtlfIk~~V  163 (164)
T cd03778          95 QKVTLMLLDQNNREHVIDAFRPDVTSSSFQRPVNDMNIASGCPLFCPVSKXEAK-NSYVRDDAIFIKAIV  163 (164)
T ss_pred             eEEEEEEECCCCCCcceeEEEcCcchHhcCCCCcccccCcCcceEEEhhHcccc-CCcccCCeEEEEEEE
Confidence            999999999987666543321     1242    23457999999999999864 599999999999987

TRAF2 associates with the receptors TNFR-1, TNFR-2, RANK (which mediates differentiation and maturation of osteoclasts) and CD40 (which is important for the proliferation and activation of B cells), among others. It regulates distinct pathways that lead to the activation of nuclear factor-kappaB and Jun NH2-terminal kinases. TRAF2 also indirectly associates with death receptors through its interaction with TRADD (TNFR-associated death domain protein). It is involved in regulating oxidative stress or ROS-induced cell death and in the preconditioning of cells by sublethal stress for protection from subsequent injury. TRAF2 contains a RING finger domain, five z

>cd03777 MATH_TRAF3 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF3 subfamily, TRAF domain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses

Probab=99.91  E-value=1.5e-23  Score=166.11  Aligned_cols=130  Identities=22%  Similarity=0.344  Sum_probs=105.9

Q ss_pred             cCCCCeEEEEEccccccc-----Cc--eeecccEEeC--CeEEEEEEecCCCCCCCCceEEEEEEecCCCCC-CCCCeEE
Q 026621           99 SASNYKHVWKIENFSKLE-----AK--LYESEVFVAG--NQKWKIKLYPKGQGVGRGSHISVYLALADLSTI-TRDSKIY  168 (236)
Q Consensus        99 ~~~~~~~~w~I~nfs~l~-----~~--~~~S~~f~~g--g~~W~l~~yp~G~~~~~~~~lsiyL~~~~~~~~-~~~w~~~  168 (236)
                      ....+.|.|+|.|||..+     ++  .+.|++|.+|  ||+|+|++||+|.+.++++|+|+||++.+++.. ...|++.
T Consensus        35 ~~~~G~hvwkI~~yS~~~~~~~~g~~~~i~S~~Fyvg~~GY~w~i~~ypnG~g~~~~~~iSvyl~L~~ge~D~~L~WP~~  114 (186)
T cd03777          35 ASYNGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLFFVIMRGEYDALLPWPFK  114 (186)
T ss_pred             cccceEEEEEECChhHHHHhhccCCCcEEECCCeEeCCCCeeEEEEEEcCCCCCCCCCEEEEEEEEecCCcccccCCcee
Confidence            455799999999999874     34  7999999999  999999999999987778899999999986532 3479999


Q ss_pred             EEEEEEEEeCCCC-ccee-----eeceeeec-CC---CCCCchhccccccccccCCCCceECCEEEEEEEEE
Q 026621          169 VHFTLRIRDQVLS-KHNE-----KKASTWLS-TS---SEDWGWSTFVELSYFNKAENGFLMNDVCIVEAEVL  230 (236)
Q Consensus       169 ~~f~l~l~n~~~~-~~~~-----~~~~~~F~-~~---~~~~G~~~Fi~~~~L~~~~~gyl~~D~l~ie~~v~  230 (236)
                      ++++|.|++|.+. .++.     ......|. ..   +.+||+++||++++|+.  .+||.||+++|+|.|.
T Consensus       115 ~~~tfsLlDQ~~~~~~~~~~~~p~p~~~~F~rp~~~~n~~~G~~~Fi~~~~Le~--~~ylkdD~l~Irv~v~  184 (186)
T cd03777         115 QKVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPVFVAQTVLEN--GTYIKDDTIFIKVIVD  184 (186)
T ss_pred             EEEEEEEEcCCCccccccceeccCCccccccCCccCCCCCCCchheeEHHHhcc--CCcEeCCEEEEEEEEe
Confidence            9999999999752 1211     11124575 22   45799999999999987  6899999999999886

TRAF3 was first described as a molecule that binds the cytoplasmic tail of CD40. However, it is not required for CD40 signaling. More recently, TRAF3 has been identified as a key regulator of type I interferon (IFN) production and the mammalian innate antiviral immunity. It mediates IFN responses in Toll-like receptor (TLR)-dependent as well as TLR-independent viral recognition pathways. It is also a key element in immunological homeostasis through its regulation of the anti-inflammatory cytokine interleukin-10. TRAF3 contains a RING finger domain, five zinc finger domains, and a TRAF domain. The TRAF domain can be divided into a more divergent N-terminal al

>cd03771 MATH_Meprin Meprin family, MATH domain; Meprins are multidomain, highly glycosylated extracellular metalloproteases, which are either anchored to the membrane or secreted into extracellular spaces

Probab=99.91  E-value=1.3e-23  Score=163.18  Aligned_cols=126  Identities=22%  Similarity=0.354  Sum_probs=99.5

Q ss_pred             CCeEEEEEccccccc-----CceeecccE-EeCCeEEEEEEecCCCCCCCCceEEEEEEecCCCC-CCCCCe-EEEEEEE
Q 026621          102 NYKHVWKIENFSKLE-----AKLYESEVF-VAGNQKWKIKLYPKGQGVGRGSHISVYLALADLST-ITRDSK-IYVHFTL  173 (236)
Q Consensus       102 ~~~~~w~I~nfs~l~-----~~~~~S~~f-~~gg~~W~l~~yp~G~~~~~~~~lsiyL~~~~~~~-~~~~w~-~~~~f~l  173 (236)
                      +.+|+|+|.|||.++     ++.++|++| .+|||+|+|++||+|... .++|+||||++.+++. ...+|+ +.++++|
T Consensus         1 cp~hvwkI~~yS~~~~~~~~g~~i~S~~FysvgGy~w~I~~YPnG~~~-~~~~lSlyL~L~~g~~d~~L~WP~v~a~~t~   79 (167)
T cd03771           1 CPEAVWRVRNFSQLLETTPKGTKIYSPRFYSPEGYAFQVGLYPNGTES-YPGYTGLYFHLCSGENDDVLEWPCPNRQATM   79 (167)
T ss_pred             CCeEEEEEcCchhhhhcCCCCCEEECCCCCccCCeEEEEEEEeCCCCC-CCCcceEEEEEecCCccccccCcceeEEEEE
Confidence            467999999999984     357999998 899999999999999887 6789999999987654 356799 5899999


Q ss_pred             EEEeCCCC----cceee----e----c----eeeec----------C-------CCCCCchhccccccccccCCCCceEC
Q 026621          174 RIRDQVLS----KHNEK----K----A----STWLS----------T-------SSEDWGWSTFVELSYFNKAENGFLMN  220 (236)
Q Consensus       174 ~l~n~~~~----~~~~~----~----~----~~~F~----------~-------~~~~~G~~~Fi~~~~L~~~~~gyl~~  220 (236)
                      +|++|...    .+...    .    .    ...|.          .       .+.+|||++||++++|+.  .+||+|
T Consensus        80 ~LlDQ~~~~~~r~~~~~~~~~dp~~~~~~~~~~~~~rP~~~~~~~~~~~~~~~~~~~g~G~~~Fis~~~L~~--r~ylk~  157 (167)
T cd03771          80 TLLDQDPDIQQRMSNQRSFTTDPSMTSSDNGEYFWDRPSKVGSYDTDTNGCTCYRGPGYGWSTFISHSRLRR--RDFLKG  157 (167)
T ss_pred             EEECCCCcccccCcceEEEecCCcccccccccccccCCccccccccccccccccccCccccccceeHHHhcc--CCCCcC
Confidence            99999731    12211    0    0    00121          1       234899999999999997  569999


Q ss_pred             CEEEEEEEEE
Q 026621          221 DVCIVEAEVL  230 (236)
Q Consensus       221 D~l~ie~~v~  230 (236)
                      |+|.|+++++
T Consensus       158 dtl~i~~~~~  167 (167)
T cd03771         158 DDLIILLDFE  167 (167)
T ss_pred             CEEEEEEEeC
Confidence            9999999874

They are expressed in renal and intestinal brush border membranes, leukocytes, and cancer cells, and are capable of cleaving growth factors, cytokines, extracellular matrix proteins, and biologically active peptides. Meprin proteases are composed of two related subunits, alpha and beta, which form homo- or hetro-complexes where the basic unit is a disulfide-linked dimer. Despite their similarity, the two subunits differ in their ability to self-associate, in proteolytic processing during biosynthesis and in substrate specificity. Both subunits are synthesized as membrane spanning proteins, however, the alpha subunit is cleaved during biosynthesis and loses its transmembrane domain. Meprin beta forms homodimers or heterotetramers while meprin alpha oligomerizes into large complexes co

>PF00917 MATH: MATH domain; InterPro: IPR002083 Although apparently functionally unrelated, intracellular TRAFs and extracellular meprins share a conserved region of about 180 residues, the meprin and TRAF homology (MATH) domain []

Probab=99.89  E-value=7.6e-23  Score=151.16  Aligned_cols=115  Identities=33%  Similarity=0.568  Sum_probs=95.7

Q ss_pred             Eccccccc-C-ceeecccEEeCCeEEEEEEecCCCCCCCCceEEEEEEecCCCCCC-CCCeEEEEEEEEEEeCCCCccee
Q 026621          109 IENFSKLE-A-KLYESEVFVAGNQKWKIKLYPKGQGVGRGSHISVYLALADLSTIT-RDSKIYVHFTLRIRDQVLSKHNE  185 (236)
Q Consensus       109 I~nfs~l~-~-~~~~S~~f~~gg~~W~l~~yp~G~~~~~~~~lsiyL~~~~~~~~~-~~w~~~~~f~l~l~n~~~~~~~~  185 (236)
                      |+|||.++ + ..+.|+.|.++|++|+|.+||+|+    +++|++||+|...+... ..|++.++++++|+++.++.. .
T Consensus         1 i~nfs~l~~~~~~~~s~~~~~~g~~W~l~~~~~~~----~~~l~~~L~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~-~   75 (119)
T PF00917_consen    1 IKNFSKLKEGEEYSSSFVFSHGGYPWRLKVYPKGN----GKYLSVYLHCDKGENDSDLEWSIEAEFRFRLLNQNGKSI-S   75 (119)
T ss_dssp             ETTGGGHHTSEEEEEEEESSTTSEEEEEEEETTES----TTEEEEEEEEECSTTGGGSSSSEEEEEEEEEE-TTSCEE-E
T ss_pred             CcccceEeCCCcEECCCeEEECCEEEEEEEEeCCC----cCcEEEEEEEeecccccccceeeeEEEEEEEecCCCCcc-e
Confidence            78999997 3 344558888999999999999986    47999999999876543 689999999999999998763 2


Q ss_pred             eec-eeeecCCCCCCchhccccccccccCCCCceECCEEEEEEEEEE
Q 026621          186 KKA-STWLSTSSEDWGWSTFVELSYFNKAENGFLMNDVCIVEAEVLR  231 (236)
Q Consensus       186 ~~~-~~~F~~~~~~~G~~~Fi~~~~L~~~~~gyl~~D~l~ie~~v~v  231 (236)
                      ... .+.|.. ..+|||.+|+++++|.++.  |++||+|+|+|+|+|
T Consensus        76 ~~~~~~~F~~-~~~~g~~~fi~~~~l~~~~--fl~dd~l~ie~~v~I  119 (119)
T PF00917_consen   76 KRIKSHSFNN-PSSWGWSSFISWEDLEDPY--FLVDDSLTIEVEVKI  119 (119)
T ss_dssp             EEEECEEECT-TSEEEEEEEEEHHHHTTCT--TSBTTEEEEEEEEEE
T ss_pred             eeeeeeEEee-ecccchhheeEHHHhCccC--CeECCEEEEEEEEEC
Confidence            223 478874 4889999999999999853  899999999999987

Meprins are mammalian tissue-specific metalloendopeptidases of the astacin family implicated in developmental, normal and pathological processes by hydrolysing a variety of proteins. Various growth factors, cytokines, and extracellular matrix proteins are substrates for meprins. They are composed of five structural domains: an N-terminal endopeptidase domain, a MAM domain (see PDOC00604 from PROSITEDOC), a MATH domain, an EGF-like domain (see PDOC00021 from PROSITEDOC) and a C-terminal transmembrane region. Meprin A and B form membrane bound homotetramer whereas homooligomers of meprin A are secreted. A proteolitic site adjacent to the MATH domain, only present in meprin A, allows the release of the protein from the membrane []. TRAF proteins were first isolated by their ability to interact with TNF receptors []. They promote cell survival by the activation of downstream protein kinases and, finally, transcription factors of the NF-kB and AP-1 family. The TRAF proteins are composed of 3 structural domains: a RING finger (see PDOC00449 from PROSITEDOC) in the N-terminal part of the protein, one to seven TRAF zinc fingers (see PDOC50145 from PROSITEDOC) in the middle and the MATH domain in the C-terminal part []. The MATH domain is necessary and sufficient for self-association and receptor interaction. From the structural analysis two consensus sequence recognised by the TRAF domain have been defined: a major one, [PSAT]x[QE]E and a minor one, PxQxxD []. The structure of the TRAF2 protein reveals a trimeric self-association of the MATH domain []. The domain forms a new, light-stranded antiparallel beta sandwich structure. A coiled-coil region adjacent to the MATH domain is also important for the trimerisation. The oligomerisation is essential for establishing appropriate connections to form signalling complexes with TNF receptor-1. The ligand binding surface of TRAF proteins is located in beta-strands 6 and 7 [].; GO: 0005515 protein binding; PDB: 1D00_E 1CZY_A 1D01_F 1CA9_A 1D0J_D 1F3V_B 1CA4_C 1D0A_A 1QSC_C 1CZZ_C ....

>smart00061 MATH meprin and TRAF homology

Probab=99.78  E-value=2.3e-18  Score=121.91  Aligned_cols=93  Identities=28%  Similarity=0.415  Sum_probs=79.8

Q ss_pred             EEEEEccccccc-CceeecccEEeCCeEEEEEEecCCCCCCCCceEEEEEEecCCCCCCCCCeEEEEEEEEEEeCCCCcc
Q 026621          105 HVWKIENFSKLE-AKLYESEVFVAGNQKWKIKLYPKGQGVGRGSHISVYLALADLSTITRDSKIYVHFTLRIRDQVLSKH  183 (236)
Q Consensus       105 ~~w~I~nfs~l~-~~~~~S~~f~~gg~~W~l~~yp~G~~~~~~~~lsiyL~~~~~~~~~~~w~~~~~f~l~l~n~~~~~~  183 (236)
                      ++|.|+||+.+. ++.+.|++|.+||++|+|.+||+      ++|||+||.|.+....+..|++.|+++++|++|+++.+
T Consensus         2 ~~~~~~~~~~~~~~~~~~S~~f~~~g~~W~i~~~p~------~~~lsl~L~~~~~~~~~~~w~v~a~~~~~l~~~~~~~~   75 (95)
T smart00061        2 LSHTFKNVSRLEEGESYFSPSEEHFNIPWRLKIYRK------NGFLSLYLHCEKEECDSRKWSIEAEFTLKLVSQNGKSL   75 (95)
T ss_pred             ceeEEEchhhcccCceEeCChhEEcCceeEEEEEEc------CCEEEEEEEeCCCcCCCCCeEEEEEEEEEEEeCCCCEE
Confidence            579999999985 78899999999999999999998      47999999998765545589999999999999997655


Q ss_pred             eeeeceeeecCCCCCCchhccc
Q 026621          184 NEKKASTWLSTSSEDWGWSTFV  205 (236)
Q Consensus       184 ~~~~~~~~F~~~~~~~G~~~Fi  205 (236)
                       .....+.|.. ..+|||.+||
T Consensus        76 -~~~~~~~F~~-~~~~G~~~fi   95 (95)
T smart00061       76 -SKKDKHVFEK-PSGWGFSKFI   95 (95)
T ss_pred             -eeeeeEEEcC-CCccceeeEC
Confidence             3455688875 6889999886

>cd03783 MATH_Meprin_Alpha Meprin family, Alpha subunit, MATH domain; Meprins are multidomain extracellular metalloproteases capable of cleaving growth factors, cytokines, extracellular matrix proteins, and biologically active peptides

Probab=99.75  E-value=9.7e-18  Score=129.09  Aligned_cols=127  Identities=21%  Similarity=0.348  Sum_probs=98.8

Q ss_pred             CCeEEEEEccccccc-----CceeecccEEe-CCeEEEEEEecCCCCC-CCCceEEEEEEecCCCCC-CCCCeE-EEEEE
Q 026621          102 NYKHVWKIENFSKLE-----AKLYESEVFVA-GNQKWKIKLYPKGQGV-GRGSHISVYLALADLSTI-TRDSKI-YVHFT  172 (236)
Q Consensus       102 ~~~~~w~I~nfs~l~-----~~~~~S~~f~~-gg~~W~l~~yp~G~~~-~~~~~lsiyL~~~~~~~~-~~~w~~-~~~f~  172 (236)
                      +..+.|+|.||+.+.     ...++||.|.. .|++.+|++||+|++. +++.|+|||++++.++.+ -..|++ .-+++
T Consensus         1 cp~~iWkI~nfs~~~~~a~~~~~i~Sp~Fyt~~GYk~~l~~~lng~~~~~~g~~lSl~~~lm~Ge~D~~L~WP~~~~~it   80 (167)
T cd03783           1 CPNAVWRVRNFSQILENTTKGDVLQSPRFYSPEGYGYGVSLYPLSNESDYSGNYTGLYFHLCSGENDAVLEWPALNRQAI   80 (167)
T ss_pred             CCceeEEECcHHHHHHhCcCCCeEECCCCccCCCceEEEEEEecCCCCCCCCCEEEEEEEEecccCCCcccCCCcCCEEE
Confidence            356899999999864     35799999976 5999999999999874 567899999999998764 468995 56899


Q ss_pred             EEEEeCCC---C-cceee----e---c------eeeecC--------------CCCCCchhccccccccccCCCCceECC
Q 026621          173 LRIRDQVL---S-KHNEK----K---A------STWLST--------------SSEDWGWSTFVELSYFNKAENGFLMND  221 (236)
Q Consensus       173 l~l~n~~~---~-~~~~~----~---~------~~~F~~--------------~~~~~G~~~Fi~~~~L~~~~~gyl~~D  221 (236)
                      |.|++|+.   . .+++.    .   .      ...|..              .+.++||++|++++.|+.  .+||+||
T Consensus        81 l~llDQ~~~~~~r~~~~~sf~~d~~~~~~~~~~~~~f~rP~~~~~~~~~~~~~~~~gfG~~~Fish~~L~~--r~yikdD  158 (167)
T cd03783          81 ITVLDQDPDVRLRMSSSRSFTTDKSQTSSAINGTLRWDRPSRVGTYDTSCDCFRGIDFGWSTFISHSQLRR--RSFLKND  158 (167)
T ss_pred             EEEEcCCcchhhccccceeeecCCCcccccccccccccCCcccccccccccccCCcccccccceeHHHHhh--CCcccCC
Confidence            99999964   1 12211    0   0      011332              235899999999999997  7899999


Q ss_pred             EEEEEEEEE
Q 026621          222 VCIVEAEVL  230 (236)
Q Consensus       222 ~l~ie~~v~  230 (236)
                      +|.|.++++
T Consensus       159 tlfI~~~~~  167 (167)
T cd03783         159 DLIIFVDFE  167 (167)
T ss_pred             eEEEEEecC
Confidence            999998863

They are composed of two related subunits, alpha and beta, which form homo- or hetro-complexes where the basic unit is a disulfide-linked dimer. The alpha subunit is synthesized as a membrane spanning protein, however, it is cleaved during biosynthesis and loses its transmembrane domain. It oligomerizes into large complexes, containing 10-100 subunits (dimers that associate noncovalently), which are secreted as latent proteases and can move through extracellular spaces in a nondestructive manner. This allows delivery of the concentrated protease to sites containing activating enzymes, such as sites of inflammation, infection or cancerous growth. Meprin alpha shows preference for small or hydrophobic residues at the P1 and P1' sites of its substrate. Both

>cd03782 MATH_Meprin_Beta Meprin family, Beta subunit, MATH domain; Meprins are multidomain extracellular metalloproteases capable of cleaving growth factors, cytokines, extracellular matrix proteins, and biologically active peptides

Probab=99.73  E-value=2.3e-17  Score=126.36  Aligned_cols=126  Identities=20%  Similarity=0.268  Sum_probs=99.8

Q ss_pred             CCeEEEEEccccccc-----CceeecccEE-eCCeEEEEEEecCCCCCCCCceEEEEEEecCCCCC-CCCCeEE-EEEEE
Q 026621          102 NYKHVWKIENFSKLE-----AKLYESEVFV-AGNQKWKIKLYPKGQGVGRGSHISVYLALADLSTI-TRDSKIY-VHFTL  173 (236)
Q Consensus       102 ~~~~~w~I~nfs~l~-----~~~~~S~~f~-~gg~~W~l~~yp~G~~~~~~~~lsiyL~~~~~~~~-~~~w~~~-~~f~l  173 (236)
                      +..+.|+|.||+++.     ...++||+|. ..|++.++++||+|.+.+ +.|||||+++.+++.+ -..|++. -+++|
T Consensus         1 cp~~iWkI~~fs~~~~~~~~~~~i~Sp~FYt~~GYkl~l~~ylnG~g~~-~~~lsl~~~lm~Ge~D~~L~WPf~~~qit~   79 (167)
T cd03782           1 CPEHIWHIRNFTQLLATTPPNGKIYSPPFLSSTGYSFQVGLYLNGTDDY-PGNLAIYLHLTSGPNDDQLQWPCPWQQATM   79 (167)
T ss_pred             CCcEEEEeCcHHHHHHhcCCCceEECCCCcCccCceeEEEEEecCCCCC-CCEEEEEEEEeccCCCccccCCCcCCeEEE
Confidence            457999999999864     3579999996 479999999999998875 6799999999998864 4689999 89999


Q ss_pred             EEEeCCC----Ccceee--e-------c-eeee--cCC-----------------CCCCchhccccccccccCCCCceEC
Q 026621          174 RIRDQVL----SKHNEK--K-------A-STWL--STS-----------------SEDWGWSTFVELSYFNKAENGFLMN  220 (236)
Q Consensus       174 ~l~n~~~----~~~~~~--~-------~-~~~F--~~~-----------------~~~~G~~~Fi~~~~L~~~~~gyl~~  220 (236)
                      .|++|+.    ..|++.  .       . ...|  ...                 +.++||+.|+++++|+.  ..||+|
T Consensus        80 ~LlDQ~~d~~~r~~~~~~~t~~P~~~s~~n~~f~w~rP~kvg~~~~~~~~~~~~r~~~~G~~~Fish~~L~~--r~yikd  157 (167)
T cd03782          80 MLLDQHPDIRQRMSNQRSVTTDPNMTSTDSDEYFWDDPRKVGSEVTDTDGSTFYRGPGYGTSAFITHLRLRS--RDFIKG  157 (167)
T ss_pred             EEEcCCCchhhccceeeeEEecCCcccccCccceecCCcccCcccccccccccccccccCccceeeHHHHhh--cCcccC
Confidence            9999974    123322  0       0 0123  211                 46899999999999997  689999


Q ss_pred             CEEEEEEEEE
Q 026621          221 DVCIVEAEVL  230 (236)
Q Consensus       221 D~l~ie~~v~  230 (236)
                      |++.|-++++
T Consensus       158 D~ifi~~~~e  167 (167)
T cd03782         158 DDVIFLLTME  167 (167)
T ss_pred             CeEEEEEecC
Confidence            9999988763

They are composed of two related subunits, alpha and beta, which form homo- or hetro-complexes where the basic unit is a disulfide-linked dimer. The beta subunit is a type I membrane protein, which forms homodimers or heterotetramers (alpha2beta2 or alpha3beta). Meprin beta shows preference for acidic residues at the P1 and P1' sites of its substrate. Among its best substrates are growth factors and chemokines such as gastrin and osteopontin. Both alpha and beta subunits contain a catalytic astacin (M12 family) protease domain followed by the adhesion or interaction domains MAM, MATH and AM. The MATH and MAM domains provide symmetrical intersubunit disulfide bonds necessary for the dimerization of meprin subunits. The MATH domain may also be required for f

>COG5077 Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]

Probab=99.57  E-value=4.6e-15  Score=134.79  Aligned_cols=132  Identities=24%  Similarity=0.477  Sum_probs=109.8

Q ss_pred             cCCCCeEEEEEcccccccCceeecccEEeCCeEEEEEEecCCCCCCCCceEEEEEEecCCCC--CC-CCCeEEEEEEEEE
Q 026621           99 SASNYKHVWKIENFSKLEAKLYESEVFVAGNQKWKIKLYPKGQGVGRGSHISVYLALADLST--IT-RDSKIYVHFTLRI  175 (236)
Q Consensus        99 ~~~~~~~~w~I~nfs~l~~~~~~S~~f~~gg~~W~l~~yp~G~~~~~~~~lsiyL~~~~~~~--~~-~~w~~~~~f~l~l  175 (236)
                      .....+++|+|++||.+.. +++||+|.+||+.|+|.++|+|+...   -+|+||+....+.  .. ..|.|+|+|.|.|
T Consensus        35 e~~~~sftW~vk~wsel~~-k~~Sp~F~vg~~twki~lfPqG~nq~---~~sVyLe~~pqe~e~~~gk~~~ccaqFaf~I  110 (1089)
T COG5077          35 ELLEMSFTWKVKRWSELAK-KVESPPFSVGGHTWKIILFPQGNNQC---NVSVYLEYEPQELEETGGKYYDCCAQFAFDI  110 (1089)
T ss_pred             HHhhcccceecCChhhhhh-hccCCcccccCeeEEEEEecccCCcc---ccEEEEEeccchhhhhcCcchhhhhheeeec
Confidence            3456689999999999975 68999999999999999999998653   3899999976431  12 3599999999999


Q ss_pred             EeCCCCc-ceeeeceeeecCCCCCCchhccccccccccCCCC---ceECCEEEEEEEEEEEEe
Q 026621          176 RDQVLSK-HNEKKASTWLSTSSEDWGWSTFVELSYFNKAENG---FLMNDVCIVEAEVLRISK  234 (236)
Q Consensus       176 ~n~~~~~-~~~~~~~~~F~~~~~~~G~~~Fi~~~~L~~~~~g---yl~~D~l~ie~~v~v~~~  234 (236)
                      -++..+. .......|+|+....+|||.+|+.+..|..|..|   |+.+|++.|.|.|+|++.
T Consensus       111 s~p~~pti~~iN~sHhrFs~~~tDwGFt~f~dL~kl~~psp~~Ppfleeg~l~ItvyVRvlkd  173 (1089)
T COG5077         111 SNPKYPTIEYINKSHHRFSMESTDWGFTNFIDLNKLIEPSPGRPPFLEEGTLVITVYVRVLKD  173 (1089)
T ss_pred             CCCCCCchhhhhcccccccccccccchhhhhhhhhhcCCCCCCCCcccCCeEEEEEEEEEEeC
Confidence            9988753 2234566899988899999999999999987765   688999999999999976

>cd03772 MATH_HAUSP Herpesvirus-associated ubiquitin-specific protease (HAUSP, also known as USP7) family, N-terminal MATH (TRAF-like) domain; composed of proteins similar to human HAUSP, an enzyme that specifically catalyzes the deubiquitylation of p53 and MDM2, hence playing an important role in the p53-MDM2 pathway

Probab=99.50  E-value=1.2e-13  Score=104.93  Aligned_cols=73  Identities=21%  Similarity=0.375  Sum_probs=62.8

Q ss_pred             CCCCcEEEEEEEEEEEeCCCCceEEEecccceeeEeecCcccccccccccccccccCCCCeEeCCEEEEEEEEEEe
Q 026621            7 LGLGWEVYVIFRLFVLDQNKDEFLILQDAMGKERRFHVLKLEWGFDQFIPLEEFNDASNGYLVGDTCVFGAEVLVK   82 (236)
Q Consensus         7 ~~~~w~~~a~f~~~l~n~~~~~~~~~~~~~~~~~~F~~~~~~wG~~~fi~~~~l~~~~~gyl~~d~~~i~~~v~i~   82 (236)
                      ...+|++.|+|+|+|+||..+..+..+.   ..|+|......|||++||+|++|.++.+|||+||+|+|+|+|.|.
T Consensus        61 ~~~~w~i~a~~~~~l~~~~~~~~~~~~~---~~~~f~~~~~~~G~~~fi~~~~L~~~~sgyl~~D~l~Ie~~V~~~  133 (137)
T cd03772          61 DSTSWSCHAQAVLRIINYKDDEPSFSRR---ISHLFFSKENDWGFSNFMTWSEVTDPEKGFIEDDTITLEVYVQAD  133 (137)
T ss_pred             CCCCCeEEEEEEEEEEcCCCCcccEEEe---eeeEEcCCCCCccchheeEHHHhcCCCCCcEECCEEEEEEEEEee
Confidence            3458999999999999998655554444   567998878899999999999999888999999999999999864

It contains an N-terminal TRAF-like domain and a C-terminal catalytic protease (C19 family) domain. The tumor suppressor p53 protein is a transcription factor that responds to many cellular stress signals and is regulated primarily through ubiquitylation and subsequent degradation. MDM2 is a RING-finger E3 ubiquitin ligase that promotes p53 ubiquitinylation. p53 and MDM2 bind to the same site in the N-terminal TRAF-like domain of HAUSP in a mutually exclusive manner. HAUSP also interacts with the Epstein-Barr nuclear antigen 1 (EBNA1) protein of the Epstein-Barr virus (EBV), which efficiently immortalizes infected cells predisposing the host to a variety of cancers. EBNA1

>cd03775 MATH_Ubp21p Ubiquitin-specific protease 21 (Ubp21p) family, MATH domain; composed of fungal proteins with similarity to Ubp21p of fission yeast

Probab=99.47  E-value=1.5e-13  Score=104.06  Aligned_cols=71  Identities=21%  Similarity=0.422  Sum_probs=62.0

Q ss_pred             CCCCcEEEEEEEEEEEeCCCCceEEEecccceeeEeecCcccccccccccccccccC----CCCeEeCCEEEEEEEEE
Q 026621            7 LGLGWEVYVIFRLFVLDQNKDEFLILQDAMGKERRFHVLKLEWGFDQFIPLEEFNDA----SNGYLVGDTCVFGAEVL   80 (236)
Q Consensus         7 ~~~~w~~~a~f~~~l~n~~~~~~~~~~~~~~~~~~F~~~~~~wG~~~fi~~~~l~~~----~~gyl~~d~~~i~~~v~   80 (236)
                      ++.+|.++|+|+|.|+||.++..+....   ..|+|+....+|||.+||++++|.+|    .+|||+||+++|+|+|+
T Consensus        60 ~~~~~~v~a~f~~~l~n~~~~~~~~~~~---~~~~F~~~~~~wG~~~fi~~~~L~~~~~~~~~g~l~nD~l~I~~~~~  134 (134)
T cd03775          60 LDEDWSVCAQFALVISNPGDPSIQLSNV---AHHRFNAEDKDWGFTRFIELRKLAHRTPDKPSPFLENGELNITVYVR  134 (134)
T ss_pred             CCCCCeEEEEEEEEEEcCCCCccceEcc---ceeEeCCCCCCCChhHcccHHHHcccccCCCCceeECCEEEEEEEEC
Confidence            5789999999999999998776655544   68999988889999999999999865    67999999999999884

Ubp21p is a deubiquitinating enzyme that may be involved in the regulation of the protein kinase Prp4p, which controls the formation of active spliceosomes. Members of this family are similar to human HAUSP (Herpesvirus-associated ubiquitin-specific protease) in that they contain an N-terminal MATH domain and a C-terminal catalytic protease (C19 family) domain. HAUSP is also an ubiquitin-specific protease that specifically catalyzes the deubiquitylation of p53 and MDM2. The MATH domain of HAUSP contains the binding site for p53 and MDM2. Similarly, the MATH domain of members in this family may be involved in substrate binding.

>cd03774 MATH_SPOP Speckle-type POZ protein (SPOP) family, MATH domain; composed of proteins with similarity to human SPOP

Probab=99.16  E-value=7.3e-11  Score=89.77  Aligned_cols=69  Identities=29%  Similarity=0.455  Sum_probs=57.6

Q ss_pred             CcEEEEEEEEEEEeCCCCceEEEecccceeeEeecCcccccccccccccccccCCCCeEeCCEEEEEEEEEE
Q 026621           10 GWEVYVIFRLFVLDQNKDEFLILQDAMGKERRFHVLKLEWGFDQFIPLEEFNDASNGYLVGDTCVFGAEVLV   81 (236)
Q Consensus        10 ~w~~~a~f~~~l~n~~~~~~~~~~~~~~~~~~F~~~~~~wG~~~fi~~~~l~~~~~gyl~~d~~~i~~~v~i   81 (236)
                      .+.+.|+|+|.|+||++++.......  ..++|+. ..+|||.+||++++|.++.+|||+||+++|+++|.|
T Consensus        68 ~~~v~a~f~~~l~n~~~~~~~~~~~~--~~~~f~~-~~~wG~~~fi~~~~L~~~~~g~l~dD~l~I~c~I~V  136 (139)
T cd03774          68 KSEVRAKFKFSILNAKGEETKAMESQ--RAYRFVQ-GKDWGFKKFIRRDFLLDEANGLLPDDKLTLFCEVSV  136 (139)
T ss_pred             CCcEEEEEEEEEEecCCCeeeeeccc--CcEeCCC-CCccCHHHeeeHHHhhhhhcccccCCEEEEEEEEEE
Confidence            46899999999999997665433321  4578875 489999999999999988899999999999999983

SPOP was isolated as a novel antigen recognized by serum from a scleroderma patient, whose overexpression in COS cells results in a discrete speckled pattern in the nuclei. It contains an N-terminal MATH domain and a C-terminal BTB (also called POZ) domain. Together with Cul3, SPOP constitutes an ubiquitin E3 ligase which is able to ubiquitinate the PcG protein BMI1, the variant histone macroH2A1 and the death domain-associated protein Daxx. Therefore, SPOP may be involved in the regulation of these proteins and may play a role in transcriptional regulation, apoptosis and X-chromosome inactivation. Cul3 binds to the BTB domain of SPOP whereas Daxx and the macroH2A1 nonhistone region have been shown to bind to the MATH domain. Both MATH and BTB domains are necessary for the nuclear speckled accumulation of SPOP. There are many proteins, mostly uncharacterized, conta

>PF00917 MATH: MATH domain; InterPro: IPR002083 Although apparently functionally unrelated, intracellular TRAFs and extracellular meprins share a conserved region of about 180 residues, the meprin and TRAF homology (MATH) domain []

Probab=99.01  E-value=8e-10  Score=81.13  Aligned_cols=66  Identities=30%  Similarity=0.557  Sum_probs=54.7

Q ss_pred             CCcEEEEEEEEEEEeCCCCceEEEecccceeeEeecCcccccccccccccccccCCCCeEeCCEEEEEEEEEE
Q 026621            9 LGWEVYVIFRLFVLDQNKDEFLILQDAMGKERRFHVLKLEWGFDQFIPLEEFNDASNGYLVGDTCVFGAEVLV   81 (236)
Q Consensus         9 ~~w~~~a~f~~~l~n~~~~~~~~~~~~~~~~~~F~~~~~~wG~~~fi~~~~l~~~~~gyl~~d~~~i~~~v~i   81 (236)
                      .+|++.|+++|.|+|+.++..... .   ..++|+.. ..||+.+||++++|.++.  |+.||+++|+|+|+|
T Consensus        54 ~~w~~~~~~~~~~~~~~~~~~~~~-~---~~~~F~~~-~~~g~~~fi~~~~l~~~~--fl~dd~l~ie~~v~I  119 (119)
T PF00917_consen   54 LEWSIEAEFRFRLLNQNGKSISKR-I---KSHSFNNP-SSWGWSSFISWEDLEDPY--FLVDDSLTIEVEVKI  119 (119)
T ss_dssp             SSSSEEEEEEEEEE-TTSCEEEEE-E---ECEEECTT-SEEEEEEEEEHHHHTTCT--TSBTTEEEEEEEEEE
T ss_pred             cceeeeEEEEEEEecCCCCcceee-e---eeeEEeee-cccchhheeEHHHhCccC--CeECCEEEEEEEEEC
Confidence            699999999999999987773332 1   34899666 889999999999998754  999999999999974

Meprins are mammalian tissue-specific metalloendopeptidases of the astacin family implicated in developmental, normal and pathological processes by hydrolysing a variety of proteins. Various growth factors, cytokines, and extracellular matrix proteins are substrates for meprins. They are composed of five structural domains: an N-terminal endopeptidase domain, a MAM domain (see PDOC00604 from PROSITEDOC), a MATH domain, an EGF-like domain (see PDOC00021 from PROSITEDOC) and a C-terminal transmembrane region. Meprin A and B form membrane bound homotetramer whereas homooligomers of meprin A are secreted. A proteolitic site adjacent to the MATH domain, only present in meprin A, allows the release of the protein from the membrane []. TRAF proteins were first isolated by their ability to interact with TNF receptors []. They promote cell survival by the activation of downstream protein kinases and, finally, transcription factors of the NF-kB and AP-1 family. The TRAF proteins are composed of 3 structural domains: a RING finger (see PDOC00449 from PROSITEDOC) in the N-terminal part of the protein, one to seven TRAF zinc fingers (see PDOC50145 from PROSITEDOC) in the middle and the MATH domain in the C-terminal part []. The MATH domain is necessary and sufficient for self-association and receptor interaction. From the structural analysis two consensus sequence recognised by the TRAF domain have been defined: a major one, [PSAT]x[QE]E and a minor one, PxQxxD []. The structure of the TRAF2 protein reveals a trimeric self-association of the MATH domain []. The domain forms a new, light-stranded antiparallel beta sandwich structure. A coiled-coil region adjacent to the MATH domain is also important for the trimerisation. The oligomerisation is essential for establishing appropriate connections to form signalling complexes with TNF receptor-1. The ligand binding surface of TRAF proteins is located in beta-strands 6 and 7 [].; GO: 0005515 protein binding; PDB: 1D00_E 1CZY_A 1D01_F 1CA9_A 1D0J_D 1F3V_B 1CA4_C 1D0A_A 1QSC_C 1CZZ_C ....

>cd03773 MATH_TRIM37 Tripartite motif containing protein 37 (TRIM37) family, MATH domain; TRIM37 is a peroxisomal protein and is a member of the tripartite motif (TRIM) protein subfamily, also known as the RING-B-box-coiled-coil (RBCC) subfamily of zinc-finger proteins

Probab=98.84  E-value=5.6e-09  Score=78.56  Aligned_cols=65  Identities=25%  Similarity=0.409  Sum_probs=53.7

Q ss_pred             CcEEEEEEEEEEEeCCCCceEEEecccceeeEeecCcccccccccccccccccCCCCeEeC--CEEEEEEEEE
Q 026621           10 GWEVYVIFRLFVLDQNKDEFLILQDAMGKERRFHVLKLEWGFDQFIPLEEFNDASNGYLVG--DTCVFGAEVL   80 (236)
Q Consensus        10 ~w~~~a~f~~~l~n~~~~~~~~~~~~~~~~~~F~~~~~~wG~~~fi~~~~l~~~~~gyl~~--d~~~i~~~v~   80 (236)
                      .|.+.++|+|+|+||.++..+....   ..+.|.. ..+|||.+||++++|.+  +|||.|  |+++|++.|+
T Consensus        64 ~~~~~~~~~l~llnq~~~~~~~~~~---~~~~f~~-~~~wG~~~Fi~~~~L~~--~gfl~~~~D~l~i~~~v~  130 (132)
T cd03773          64 GEASKYEYRVEMVHQANPTKNIKRE---FASDFEV-GECWGYNRFFRLDLLIN--EGYLLPENDTLILRFSVR  130 (132)
T ss_pred             CCceeEEEEEEEEcCCCCccceEEe---ccccccC-CCCcCHHHhccHHHHhh--CCCcCCCCCEEEEEEEEe
Confidence            4788899999999996555555444   5688865 47899999999999974  799999  9999998886

Mutations in the human TRIM37 gene (also known as MUL) cause Mulibrey (muscle-liver-brain-eye) nanism, a rare growth disorder of prenatal onset characterized by dysmorphic features, pericardial constriction and hepatomegaly. TRIM37, similar to other TRIMs, contains a cysteine-rich, zinc-binding RING-finger domain followed by another cysteine-rich zinc-binding domain, the B-box, and a coiled-coil domain. TRIM37 is autoubiquitinated in a RING domain-dependent manner, indicating that it functions as an ubiquitin E3 ligase. In addition to the tripartite motif, TRIM37 also contains a MATH domain C-terminal to the coiled-coil domain. The MATH domain of TRIM37 has been shown to interact with the TRAF domain of six known TRAFs i

>cd00270 MATH_TRAF_C Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF domain, C-terminal MATH subdomain; TRAF molecules serve as adapter proteins that link cell surface TNFRs and receptors of the interleukin-1/Toll-like family to downstream kinase signaling cascades which results in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses in the immune and inflammatory systems

Probab=98.81  E-value=9.9e-09  Score=78.86  Aligned_cols=70  Identities=29%  Similarity=0.490  Sum_probs=51.2

Q ss_pred             CCCcEEEEEEEEEEEeCCCC--ceEEEec--ccceeeEee-----cCcccccccccccccccccCCCCeEeCCEEEEEEE
Q 026621            8 GLGWEVYVIFRLFVLDQNKD--EFLILQD--AMGKERRFH-----VLKLEWGFDQFIPLEEFNDASNGYLVGDTCVFGAE   78 (236)
Q Consensus         8 ~~~w~~~a~f~~~l~n~~~~--~~~~~~~--~~~~~~~F~-----~~~~~wG~~~fi~~~~l~~~~~gyl~~d~~~i~~~   78 (236)
                      +..|.+.|+|+|.|+||.++  ..+....  .....+.|.     .....|||.+||++++|.+  .|||+||+++|+++
T Consensus        70 ~~~w~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~G~~~fi~~~~L~~--~gfl~dD~l~I~~~  147 (149)
T cd00270          70 LLEWPFRGKITLTLLDQSDDSKRKHITETFMPDPNSSAFQRPPTGENNIGFGYPEFVPLEKLES--RGYVKDDTLFIKVE  147 (149)
T ss_pred             cccCCccceEEEEEECCCCccccCceEEEEEcCCchHhhcCCCcccCCCCcCcceEeEHHHhcc--CCCEeCCEEEEEEE
Confidence            46799999999999999864  2221110  000123454     2457899999999999975  48999999999998


Q ss_pred             E
Q 026621           79 V   79 (236)
Q Consensus        79 v   79 (236)
                      |
T Consensus       148 v  148 (149)
T cd00270         148 V  148 (149)
T ss_pred             E
Confidence            7

There are at least six mammalian and three Drosophila proteins containing TRAF domains. The mammalian TRAFs display varying expression profiles, indicating independent and cell type-specific regulation. They display distinct, as well as overlapping functions and interactions with receptors. Most TRAFs, except TRAF1, share N-terminal homology and contain a RING domain, multiple zinc finger domains, and a TRAF domain. TRAFs form homo- and heterotrimers through its TRAF domain. The TRAF domain can be divided into a more divergent N-ter

>cd00121 MATH MATH (meprin and TRAF-C homology) domain; an independent folding unit with an eight-stranded beta-sandwich structure found in meprins, TRAFs and other proteins

Probab=98.80  E-value=1.3e-08  Score=74.90  Aligned_cols=67  Identities=30%  Similarity=0.455  Sum_probs=53.0

Q ss_pred             CCCcEEEEEEEEEEEeCCCCceEEEecccceeeEee-cCcccccccccccccccccCCCCeEeCCEEEEEEEEE
Q 026621            8 GLGWEVYVIFRLFVLDQNKDEFLILQDAMGKERRFH-VLKLEWGFDQFIPLEEFNDASNGYLVGDTCVFGAEVL   80 (236)
Q Consensus         8 ~~~w~~~a~f~~~l~n~~~~~~~~~~~~~~~~~~F~-~~~~~wG~~~fi~~~~l~~~~~gyl~~d~~~i~~~v~   80 (236)
                      +..|.+.|+|+|.|+|+..++.....    ..+.|. .....|||.+||++++|.++  ++++||+++|+|+|.
T Consensus        59 ~~~~~~~~~~~~~l~~~~~~~~~~~~----~~~~~~~~~~~~~G~~~fi~~~~l~~~--~~~~~d~l~i~~~v~  126 (126)
T cd00121          59 LEKWSVRAEFTLKLVNQNGGKSLSKS----FTHVFFSEKGSGWGFPKFISWDDLEDS--YYLVDDSLTIEVEVK  126 (126)
T ss_pred             CCCCcEEEEEEEEEECCCCCccceEe----ccCCcCCCCCCCCChHHeeEHHHhccC--CcEECCEEEEEEEEC
Confidence            46799999999999999844444332    345553 66789999999999999864  349999999999883

Meprins comprise a class of extracellular metalloproteases which are anchored to the membrane and are capable of cleaving growth factors, extracellular matrix proteins, and biologically active peptides. TRAF molecules serve as adapter proteins that link cell surface receptors of the Tumor Necrosis Factor and 1nterleukin-1/Toll-like families to downstream kinase cascades, which results in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses in the immune and inflammatory systems. Other members include the ubiquitin ligases, TRIM37 and SPOP, and the ubiquitin-specific proteases, HAUSP and Ubp21p. A large number of uncharacterized members mostly from lineage-specific expansions in C. elegans and rice contain MATH and BTB domains, similar to SPOP. The MATH doma

>KOG1987 consensus Speckle-type POZ protein SPOP and related proteins with TRAF, MATH and BTB/POZ domains [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=98.80  E-value=6.1e-10  Score=95.14  Aligned_cols=218  Identities=22%  Similarity=0.262  Sum_probs=142.8

Q ss_pred             CcEEEEEEEEEEEeCCCCce-EEEecccceeeEee--cCcccccccccccccccccCCCCeEeCCEEEEEEEEE-Eeccc
Q 026621           10 GWEVYVIFRLFVLDQNKDEF-LILQDAMGKERRFH--VLKLEWGFDQFIPLEEFNDASNGYLVGDTCVFGAEVL-VKERN   85 (236)
Q Consensus        10 ~w~~~a~f~~~l~n~~~~~~-~~~~~~~~~~~~F~--~~~~~wG~~~fi~~~~l~~~~~gyl~~d~~~i~~~v~-i~~~~   85 (236)
                      +|+++|++.|++.|+...++ ...+.   ...+|.  ...+.||+.+++|+..+.++.+||+++..+++.+++- .++. 
T Consensus        54 ~~~~~~~~~l~v~n~~~~~~~~~~~~---~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~V~~~~-  129 (297)
T KOG1987|consen   54 GWERYAKLRLTVVNQKSEKYLSTVEE---GFSWFRFNKVLKEWGFGKMLPLTLLIDCSNGFLVAHKLVLVARSEVFEAM-  129 (297)
T ss_pred             CcceeEEEEEEEccCCCcceeeeeee---eEEeccccccccccCcccccChHHhhcccCcEEEcCceEEEeeecceeee-
Confidence            99999999999999998887 65522   344443  4478999999999999999999999998777776655 3332 


Q ss_pred             CCccceEEEE------EeecCCC----CeEEEEEcccccccC----ceeecccEEeCCeEEEEEEecCCCCCCCCceEEE
Q 026621           86 KCKGECLFLA------KLTSASN----YKHVWKIENFSKLEA----KLYESEVFVAGNQKWKIKLYPKGQGVGRGSHISV  151 (236)
Q Consensus        86 ~~~~e~~s~~------~~~~~~~----~~~~w~I~nfs~l~~----~~~~S~~f~~gg~~W~l~~yp~G~~~~~~~~lsi  151 (236)
                       .+.+.....      .+.....    ..|+|.+.+++..+.    ....+..|..++..|++.++|.+.+......++.
T Consensus       130 -~~~d~~~~~~~~~~~~d~~~~~~~~~~~F~~~~s~~~~~~~~~~~~~~~a~~f~~~~~~lk~~~~~~l~~~~~~~~~~~  208 (297)
T KOG1987|consen  130 -GKSDVFKESSKLITLLEEKPEVLEALNGFQVLPSQVSSVERIFEKHPDLAAAFKYKNRHLKLACMPVLLSLIETLNVSQ  208 (297)
T ss_pred             -cccccchhccccccccccchhhHhhhceEEEeccchHHHHHhhcCChhhhhccccccHHHHHHHHHHHHHHHHhhhhcc
Confidence             334432210      0013334    789999999999872    2677789999999999999999976654567788


Q ss_pred             EEEecCCCCC--CCCCeEEEEEEEEEEeCCCCc--ce--eeeceeeecCCCCCCchhccccccccccCCCCceECCEEEE
Q 026621          152 YLALADLSTI--TRDSKIYVHFTLRIRDQVLSK--HN--EKKASTWLSTSSEDWGWSTFVELSYFNKAENGFLMNDVCIV  225 (236)
Q Consensus       152 yL~~~~~~~~--~~~w~~~~~f~l~l~n~~~~~--~~--~~~~~~~F~~~~~~~G~~~Fi~~~~L~~~~~gyl~~D~l~i  225 (236)
                      +|...+....  ...-.+.+......+|+...+  +.  .+....+.......+ ..++.++.++.....++++++++.+
T Consensus       209 ~l~~~~~~~~~~~~~~~~~~~~~~~~ld~l~~~~~~~~~k~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~  287 (297)
T KOG1987|consen  209 SLQEASNYDLKEAKSALTYVIAAGFKLDWLEKKLNEVKEKKKKDLWYEIRLQEL-EEELKSLKDKCSDLEGLLVKDKAEV  287 (297)
T ss_pred             cHHHhchhHHHHHHHHHHHHHhccchHhHHHHHHHHHHHhhhHHHHHHHHHHHH-HHHHHhhhhhhhhHHHHHHhhhhhh
Confidence            8887653221  111223344444456665432  21  111111111111112 4567777766665567888888888


Q ss_pred             EEEEEEEE
Q 026621          226 EAEVLRIS  233 (236)
Q Consensus       226 e~~v~v~~  233 (236)
                      ++....++
T Consensus       288 ~~~~~~~~  295 (297)
T KOG1987|consen  288 EAESEPLS  295 (297)
T ss_pred             hcccCCcC
Confidence            88766554

>KOG1987 consensus Speckle-type POZ protein SPOP and related proteins with TRAF, MATH and BTB/POZ domains [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=98.77  E-value=1.1e-07  Score=81.15  Aligned_cols=119  Identities=26%  Similarity=0.523  Sum_probs=97.1

Q ss_pred             EEEEEcccccccCceeecccEEeCCeEEEEEEecCCCCCCCCceEEEEEEecCCCCCCCCCeEEEEEEEEEEeCCCCcc-
Q 026621          105 HVWKIENFSKLEAKLYESEVFVAGNQKWKIKLYPKGQGVGRGSHISVYLALADLSTITRDSKIYVHFTLRIRDQVLSKH-  183 (236)
Q Consensus       105 ~~w~I~nfs~l~~~~~~S~~f~~gg~~W~l~~yp~G~~~~~~~~lsiyL~~~~~~~~~~~w~~~~~f~l~l~n~~~~~~-  183 (236)
                      +.|.+.+|+... ..++|..|..+|..|++.+||.|+      +++.|+.+....    +|++.+.+.+.+.|+...+. 
T Consensus         6 ~~~~~~~~~~~~-l~~ys~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~----~~~~~~~~~l~v~n~~~~~~~   74 (297)
T KOG1987|consen    6 FTWVISNFSSVG-LVIYSNGFVKGGCKWRLSAYPKGN------YLSLTLSVSDSP----GWERYAKLRLTVVNQKSEKYL   74 (297)
T ss_pred             cceeeccCcchh-hhccccceeecCceEEEEEecCCC------EEEEEEEeccCC----CcceeEEEEEEEccCCCccee
Confidence            348899998876 668899999999999999999974      789999887642    79999999999999988643 


Q ss_pred             eee-eceeeecCC--CCCCchhccccccccccCCCCceECCEEEEEEEEEEEEe
Q 026621          184 NEK-KASTWLSTS--SEDWGWSTFVELSYFNKAENGFLMNDVCIVEAEVLRISK  234 (236)
Q Consensus       184 ~~~-~~~~~F~~~--~~~~G~~~Fi~~~~L~~~~~gyl~~D~l~ie~~v~v~~~  234 (236)
                      ... ....+|...  ...||+..+++...+.++..||++++.+++-+...|++.
T Consensus        75 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~V~~~  128 (297)
T KOG1987|consen   75 STVEEGFSWFRFNKVLKEWGFGKMLPLTLLIDCSNGFLVAHKLVLVARSEVFEA  128 (297)
T ss_pred             eeeeeeEEeccccccccccCcccccChHHhhcccCcEEEcCceEEEeeecceee
Confidence            333 344555443  578999999999999998899999988888888776654

>COG5077 Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]

Probab=98.68  E-value=9.1e-09  Score=94.53  Aligned_cols=71  Identities=23%  Similarity=0.432  Sum_probs=64.8

Q ss_pred             CcEEEEEEEEEEEeCCCCceEEEecccceeeEeecCcccccccccccccccccCCCC---eEeCCEEEEEEEEE-Eec
Q 026621           10 GWEVYVIFRLFVLDQNKDEFLILQDAMGKERRFHVLKLEWGFDQFIPLEEFNDASNG---YLVGDTCVFGAEVL-VKE   83 (236)
Q Consensus        10 ~w~~~a~f~~~l~n~~~~~~~~~~~~~~~~~~F~~~~~~wG~~~fi~~~~l~~~~~g---yl~~d~~~i~~~v~-i~~   83 (236)
                      .|.|||+|.|.|-|++.+.......   ++|||....+||||++|+.|..|..|..|   |+.+++++|.|+|+ .++
T Consensus        99 ~~~ccaqFaf~Is~p~~pti~~iN~---sHhrFs~~~tDwGFt~f~dL~kl~~psp~~Ppfleeg~l~ItvyVRvlkd  173 (1089)
T COG5077          99 YYDCCAQFAFDISNPKYPTIEYINK---SHHRFSMESTDWGFTNFIDLNKLIEPSPGRPPFLEEGTLVITVYVRVLKD  173 (1089)
T ss_pred             chhhhhheeeecCCCCCCchhhhhc---ccccccccccccchhhhhhhhhhcCCCCCCCCcccCCeEEEEEEEEEEeC
Confidence            4999999999999999988887766   89999999999999999999999988777   79999999999999 554

>cd03779 MATH_TRAF1 Tumor Necrosis Factor Receptor (TNFR) Associated Factor (TRAF) family, TRAF1 subfamily, TRAF domain, C-terminal MATH subdomain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses

Probab=98.60  E-value=1.3e-07  Score=72.37  Aligned_cols=70  Identities=23%  Similarity=0.357  Sum_probs=51.9

Q ss_pred             CCcEEEEEEEEEEEeCCCCce--EEEecccceeeEee----cCcccccccccccccccccCCCCeEeCCEEEEEEEE
Q 026621            9 LGWEVYVIFRLFVLDQNKDEF--LILQDAMGKERRFH----VLKLEWGFDQFIPLEEFNDASNGYLVGDTCVFGAEV   79 (236)
Q Consensus         9 ~~w~~~a~f~~~l~n~~~~~~--~~~~~~~~~~~~F~----~~~~~wG~~~fi~~~~l~~~~~gyl~~d~~~i~~~v   79 (236)
                      ..|.+.|+++|+|++|.+...  ..... ....+.|.    .....||+.+||++++|+....+||.||++.|+|+|
T Consensus        71 l~wpv~~~~tfsLlDq~~~~~~~~~~~~-~~~~~~F~rP~~~~n~~~G~~~Fi~~~~Le~s~~~ylkDD~~~Irc~V  146 (147)
T cd03779          71 LPWPFRHKVTFMLLDQNNREHVIDAFRP-DLSSASFQRPVSDMNVASGCPLFFPLKKLQSPKHAYCKDDTIYIKCVV  146 (147)
T ss_pred             cCcceEEEEEEEEECCCCCCCCcEeecC-CcccccccCcccCCCCCcchhheeEHHHhcccCCCcEeCCEEEEEEEE
Confidence            379999999999999974332  12211 00135686    344579999999999997543599999999999987

TRAF1 expression is the most restricted among the TRAFs. It is found exclusively in activated lymphocytes, dendritic cells and certain epithelia. TRAF1 associates, directly or indirectly through heterodimerization with TRAF2, with the TNFR family receptors TNFR-2, CD30, RANK, CD40 and LMP1, among others. It also binds the intracellular proteins TRADD, TANK, TRIP, RIP1, RIP2 and FLIP. TRAF1 is unique among the TRAFs in that it lacks a RING domain, which is critical for the activation of nuclear factor-kappaB and Jun NH2-terminal kinase. Studies on TRAF1-deficient mice suggest that TRAF1 has a negative regulatory role in TNFR-mediat

>cd03776 MATH_TRAF6 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF6 subfamily, TRAF domain, C-terminal MATH subdomain; composed of proteins with similarity to human TRAF6, including the Drosophila protein DTRAF2

Probab=98.55  E-value=7.4e-08  Score=73.94  Aligned_cols=71  Identities=23%  Similarity=0.323  Sum_probs=51.7

Q ss_pred             CCCcEEEEEEEEEEEeCCCCceEEEe--cccceeeEeec-----CcccccccccccccccccCCCCeEeCCEEEEEEEEE
Q 026621            8 GLGWEVYVIFRLFVLDQNKDEFLILQ--DAMGKERRFHV-----LKLEWGFDQFIPLEEFNDASNGYLVGDTCVFGAEVL   80 (236)
Q Consensus         8 ~~~w~~~a~f~~~l~n~~~~~~~~~~--~~~~~~~~F~~-----~~~~wG~~~fi~~~~l~~~~~gyl~~d~~~i~~~v~   80 (236)
                      ...|.+.|+|+|.|++|.++..+...  ......+.|..     ....|||.+||++++|..  .|||.||+++|+++|.
T Consensus        70 ~l~wpv~a~~~~~lldq~~~~~~~~~~~~~~~~~~~F~~p~~~~~~~~~G~~~fi~~~~Le~--~~yl~dD~l~I~c~V~  147 (147)
T cd03776          70 HLDWPFQGTITLTLLDQSEPRQNIHETMMSKPELLAFQRPTTDRNPKGFGYVEFAHIEDLLQ--RGFVKNDTLLIKIEVN  147 (147)
T ss_pred             ccCCcccceeEEEEECCCcccCccEEEEEcCCChHhhcCCCcCCCCCCeeEceeeEHHHhhh--CCCccCCEEEEEEEEC
Confidence            35799999999999999854332111  00002345752     345799999999999974  5899999999999884

TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF6 is the most divergent in its TRAF domain among the mammalian TRAFs. In addition to mediating TNFR family signaling, it is also an essential signaling molecule of the interleukin-1/Toll-like receptor superfamily. Whereas other TRAF molecules display similar and overlapping TNFR-binding specificities, TRAF6 binds completely different sites on receptors such as CD40 and RANK. TRAF6 serves as a molecular bridge between innate and adaptive immunity and plays a central role in osteoimmunology. DTRAF2, as an activator of nuclear factor-kapp

>cd03780 MATH_TRAF5 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF5 subfamily, TRAF domain, C-terminal MATH subdomain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses

Probab=98.51  E-value=2.7e-07  Score=70.81  Aligned_cols=71  Identities=23%  Similarity=0.307  Sum_probs=52.7

Q ss_pred             CCcEEEEEEEEEEEeCCCCceE--EEecccceeeEeecC----cccccccccccccccccCCCCeEeCCEEEEEEEE
Q 026621            9 LGWEVYVIFRLFVLDQNKDEFL--ILQDAMGKERRFHVL----KLEWGFDQFIPLEEFNDASNGYLVGDTCVFGAEV   79 (236)
Q Consensus         9 ~~w~~~a~f~~~l~n~~~~~~~--~~~~~~~~~~~F~~~----~~~wG~~~fi~~~~l~~~~~gyl~~d~~~i~~~v   79 (236)
                      ..|.+.|+++|+|++|.+...+  .........+.|...    ...||+.+||++++|+....+||.||++.|.|.|
T Consensus        71 l~wp~~~~~tfsLlDq~~~~~~~~~~~~~~~~~~~F~rp~~~~n~~~G~~~Fi~~~~Le~s~~~ylkdD~~~Ik~~v  147 (148)
T cd03780          71 LQWPFRQRVTLMLLDQSGKKNHIMETFKADPNSSSFKRPDGEMNIASGCPRFVAHSVLENAKNTYIKDDTLFLKVAV  147 (148)
T ss_pred             cCcceEEEEEEEEECCCCCCCCcceeeecCCccccccCCCCCCCCCcChhheeEHHHhhcccCCcCcCCEEEEEEEE
Confidence            5799999999999999744332  111100124668654    4579999999999997655699999999999887

TRAF5 was identified as an activator of nuclear factor-kappaB and a regulator of lymphotoxin-beta receptor and CD40 signaling. Its interaction with CD40 is indirect, involving hetero-oligomerization with TRAF3. In addition, TRAF5 has been shown to associate with other TNFRs including CD27, CD30, OX40 and GITR (glucocorticoid-induced TNFR). It plays a role in modulating Th2 immune responses (driven by OX40 costimulation) and T-cell activation (triggered by GITR). It is also involved in osteoclastogenesis. TRAF5 contains a RING finger domain, five zinc finger domains, and a TRAF domain. The TRAF domain can be divided into a more dive

>KOG1863 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]

Probab=98.45  E-value=2e-07  Score=92.14  Aligned_cols=130  Identities=22%  Similarity=0.254  Sum_probs=105.8

Q ss_pred             CCCCeEEEEEcccccccCceeecccEEeCCeEEEEEEecCCCCCCCCceEEEEEEecCCCCCCCCCeEEEEEEEEEEeCC
Q 026621          100 ASNYKHVWKIENFSKLEAKLYESEVFVAGNQKWKIKLYPKGQGVGRGSHISVYLALADLSTITRDSKIYVHFTLRIRDQV  179 (236)
Q Consensus       100 ~~~~~~~w~I~nfs~l~~~~~~S~~f~~gg~~W~l~~yp~G~~~~~~~~lsiyL~~~~~~~~~~~w~~~~~f~l~l~n~~  179 (236)
                      ......+|...+...+.. ...|+.|..|+.+|++.+.|+++.   ...+++|+.+...... ..|++++++.+.+.|..
T Consensus        24 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~-~~~s~~~~~~~~v~~~~   98 (1093)
T KOG1863|consen   24 SLNQSTTIDGIDDKSLLY-RALSSNFGAGATKWKILIAPKVNS---LQSTRKKLEVMPSQSL-KSWSCGAQAVLRVKNTI   98 (1093)
T ss_pred             hhcccccccCcCcchhhh-HhcCccccccccceeeeeccccCc---ccceeEEeeeccCCCC-cceEecchhhhccccCC
Confidence            334445566666555554 688999999999999999999883   3679999999887655 55999999999999933


Q ss_pred             CCc-ceeeeceeeecCCCCCCchhccccccccccCCCCceECCEEEEEEEEEEEEe
Q 026621          180 LSK-HNEKKASTWLSTSSEDWGWSTFVELSYFNKAENGFLMNDVCIVEAEVLRISK  234 (236)
Q Consensus       180 ~~~-~~~~~~~~~F~~~~~~~G~~~Fi~~~~L~~~~~gyl~~D~l~ie~~v~v~~~  234 (236)
                      ++. ...+...|.|.....+||+..|+.++++.++..||+.+|++.++++|.+-.-
T Consensus        99 ~~~~~~~~~~~h~~~~~~~dwg~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~  154 (1093)
T KOG1863|consen   99 DNLPDPEKAIHHVFTADERDWGFSCFSTSSDIRKPEDGYVRNGLEKLEKRVRVEQP  154 (1093)
T ss_pred             CCchhhhhhhhhcccccccchhhccchhHhhccCcccccccccceeeeeeeeeecC
Confidence            332 3355667899888899999999999999999999999999999999988653

>cd03781 MATH_TRAF4 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF4 subfamily, TRAF domain, C-terminal MATH subdomain; composed of proteins with similarity to human TRAF4, including the Drosophila protein DTRAF1

Probab=98.36  E-value=8.6e-07  Score=68.57  Aligned_cols=69  Identities=23%  Similarity=0.400  Sum_probs=49.1

Q ss_pred             CCcEEEEEEEEEEEeCCCC--ce--EEEec--ccceeeEeec--------CcccccccccccccccccCCCCeEeCCEEE
Q 026621            9 LGWEVYVIFRLFVLDQNKD--EF--LILQD--AMGKERRFHV--------LKLEWGFDQFIPLEEFNDASNGYLVGDTCV   74 (236)
Q Consensus         9 ~~w~~~a~f~~~l~n~~~~--~~--~~~~~--~~~~~~~F~~--------~~~~wG~~~fi~~~~l~~~~~gyl~~d~~~   74 (236)
                      ..|.+.|+|+|+|++|.++  ..  +....  .......|..        ....||+.+||++++|+  .+|||.||+++
T Consensus        71 l~wp~~a~~~~~llDq~~~~~~~~~~~~~~~~~~~~~~~F~rp~~~~~~~~~~~~G~~~fi~~~~Le--~~~yl~dD~l~  148 (154)
T cd03781          71 LEWPFSHRITFTLLDQSDPSLSKPQHITETFTPDPTWKNFQKPSASRLDESTLGFGYPKFISHEDLK--KRNYIKDDAIF  148 (154)
T ss_pred             cCCceeeEEEEEEECCCCCccccCcceEEEEEcCCchhhhcCCcccccCCCCCccchhHeeEHHHHh--hCCcccCCEEE
Confidence            4899999999999999754  11  11000  0001234542        33469999999999997  47899999999


Q ss_pred             EEEEE
Q 026621           75 FGAEV   79 (236)
Q Consensus        75 i~~~v   79 (236)
                      |+|+|
T Consensus       149 Irc~v  153 (154)
T cd03781         149 LRASV  153 (154)
T ss_pred             EEEEe
Confidence            99987

TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF4 is highly expressed during embryogenesis, especially in the central and peripheral nervous system. Studies using TRAF4-deficient mice show that TRAF4 is required for neurogenesis, as well as the development of the trachea and the axial skeleton. In addition, TRAF4 augments nuclear factor-kappaB activation triggered by GITR (glucocorticoid-induced TNFR), a receptor expressed in T-cells, B-cells and macrophages. It also participates in counteracting the signaling mediated by Toll-like receptors through its association with TRAF6 and TR

>cd03778 MATH_TRAF2 Tumor Necrosis Factor Receptor (TNFR) Associated Factor (TRAF) family, TRAF2 subfamily, TRAF domain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses

Probab=98.33  E-value=1.2e-06  Score=68.07  Aligned_cols=69  Identities=25%  Similarity=0.369  Sum_probs=50.6

Q ss_pred             CCcEEEEEEEEEEEeCCCCceEEEecc--cc---eeeEe-ecCcccccccccccccccccCCCCeEeCCEEEEEEEE
Q 026621            9 LGWEVYVIFRLFVLDQNKDEFLILQDA--MG---KERRF-HVLKLEWGFDQFIPLEEFNDASNGYLVGDTCVFGAEV   79 (236)
Q Consensus         9 ~~w~~~a~f~~~l~n~~~~~~~~~~~~--~~---~~~~F-~~~~~~wG~~~fi~~~~l~~~~~gyl~~d~~~i~~~v   79 (236)
                      ..|.+..+++|.|++|.+.+. .....  ..   ..+|. ......||+..|+|+++|.+. .|||.||++.|+|.|
T Consensus        89 L~WPf~~~itl~llDQ~~r~h-i~~~~~pd~~~~~f~RP~~~~n~~~G~~~Fv~l~~l~~~-~~Yv~dDtlfIk~~V  163 (164)
T cd03778          89 LRWPFNQKVTLMLLDQNNREH-VIDAFRPDVTSSSFQRPVNDMNIASGCPLFCPVSKXEAK-NSYVRDDAIFIKAIV  163 (164)
T ss_pred             cCCceeeEEEEEEECCCCCCc-ceeEEEcCcchHhcCCCCcccccCcCcceEEEhhHcccc-CCcccCCeEEEEEEE
Confidence            789999999999999975333 22110  00   11333 344457999999999999754 599999999999877

TRAF2 associates with the receptors TNFR-1, TNFR-2, RANK (which mediates differentiation and maturation of osteoclasts) and CD40 (which is important for the proliferation and activation of B cells), among others. It regulates distinct pathways that lead to the activation of nuclear factor-kappaB and Jun NH2-terminal kinases. TRAF2 also indirectly associates with death receptors through its interaction with TRADD (TNFR-associated death domain protein). It is involved in regulating oxidative stress or ROS-induced cell death and in the preconditioning of cells by sublethal stress for protection from subsequent injury. TRAF2 contains a RING finger domain, five z

>cd03777 MATH_TRAF3 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF3 subfamily, TRAF domain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses

Probab=98.13  E-value=5.4e-06  Score=65.97  Aligned_cols=70  Identities=17%  Similarity=0.238  Sum_probs=50.1

Q ss_pred             CCcEEEEEEEEEEEeCCCCceEEEe--cccceeeEeecC----cccccccccccccccccCCCCeEeCCEEEEEEEEE
Q 026621            9 LGWEVYVIFRLFVLDQNKDEFLILQ--DAMGKERRFHVL----KLEWGFDQFIPLEEFNDASNGYLVGDTCVFGAEVL   80 (236)
Q Consensus         9 ~~w~~~a~f~~~l~n~~~~~~~~~~--~~~~~~~~F~~~----~~~wG~~~fi~~~~l~~~~~gyl~~d~~~i~~~v~   80 (236)
                      ..|.+.++++|.|++|.....+...  ......+.|...    ...||+++||++++|.  ..+||.||++.|.|.|.
T Consensus       109 L~WP~~~~~tfsLlDQ~~~~~~~~~~~~p~p~~~~F~rp~~~~n~~~G~~~Fi~~~~Le--~~~ylkdD~l~Irv~v~  184 (186)
T cd03777         109 LPWPFKQKVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPVFVAQTVLE--NGTYIKDDTIFIKVIVD  184 (186)
T ss_pred             cCCceeEEEEEEEEcCCCccccccceeccCCccccccCCccCCCCCCCchheeEHHHhc--cCCcEeCCEEEEEEEEe
Confidence            4799999999999999642111110  000023457522    3579999999999997  47899999999998875

TRAF3 was first described as a molecule that binds the cytoplasmic tail of CD40. However, it is not required for CD40 signaling. More recently, TRAF3 has been identified as a key regulator of type I interferon (IFN) production and the mammalian innate antiviral immunity. It mediates IFN responses in Toll-like receptor (TLR)-dependent as well as TLR-independent viral recognition pathways. It is also a key element in immunological homeostasis through its regulation of the anti-inflammatory cytokine interleukin-10. TRAF3 contains a RING finger domain, five zinc finger domains, and a TRAF domain. The TRAF domain can be divided into a more divergent N-terminal al

>cd03771 MATH_Meprin Meprin family, MATH domain; Meprins are multidomain, highly glycosylated extracellular metalloproteases, which are either anchored to the membrane or secreted into extracellular spaces

Probab=97.91  E-value=3.7e-05  Score=60.06  Aligned_cols=71  Identities=18%  Similarity=0.247  Sum_probs=47.4

Q ss_pred             CCCCcE-EEEEEEEEEEeCCC---CceEEEe----cccc-----eeeEeec-----------------Cccccccccccc
Q 026621            7 LGLGWE-VYVIFRLFVLDQNK---DEFLILQ----DAMG-----KERRFHV-----------------LKLEWGFDQFIP   56 (236)
Q Consensus         7 ~~~~w~-~~a~f~~~l~n~~~---~~~~~~~----~~~~-----~~~~F~~-----------------~~~~wG~~~fi~   56 (236)
                      ....|. +.|+++|+|++|..   ...+...    +...     ....|..                 ...+|||..||+
T Consensus        66 ~~L~WP~v~a~~t~~LlDQ~~~~~~r~~~~~~~~~dp~~~~~~~~~~~~~rP~~~~~~~~~~~~~~~~~~~g~G~~~Fis  145 (167)
T cd03771          66 DVLEWPCPNRQATMTLLDQDPDIQQRMSNQRSFTTDPSMTSSDNGEYFWDRPSKVGSYDTDTNGCTCYRGPGYGWSTFIS  145 (167)
T ss_pred             ccccCcceeEEEEEEEECCCCcccccCcceEEEecCCcccccccccccccCCccccccccccccccccccCcccccccee
Confidence            356899 58999999999962   1112111    1000     0001222                 234799999999


Q ss_pred             ccccccCCCCeEeCCEEEEEEEE
Q 026621           57 LEEFNDASNGYLVGDTCVFGAEV   79 (236)
Q Consensus        57 ~~~l~~~~~gyl~~d~~~i~~~v   79 (236)
                      +++|..  .+||.||++.|.+++
T Consensus       146 ~~~L~~--r~ylk~dtl~i~~~~  166 (167)
T cd03771         146 HSRLRR--RDFLKGDDLIILLDF  166 (167)
T ss_pred             HHHhcc--CCCCcCCEEEEEEEe
Confidence            999985  569999999999876

They are expressed in renal and intestinal brush border membranes, leukocytes, and cancer cells, and are capable of cleaving growth factors, cytokines, extracellular matrix proteins, and biologically active peptides. Meprin proteases are composed of two related subunits, alpha and beta, which form homo- or hetro-complexes where the basic unit is a disulfide-linked dimer. Despite their similarity, the two subunits differ in their ability to self-associate, in proteolytic processing during biosynthesis and in substrate specificity. Both subunits are synthesized as membrane spanning proteins, however, the alpha subunit is cleaved during biosynthesis and loses its transmembrane domain. Meprin beta forms homodimers or heterotetramers while meprin alpha oligomerizes into large complexes co

>smart00061 MATH meprin and TRAF homology

Probab=97.69  E-value=0.00011  Score=51.14  Aligned_cols=43  Identities=26%  Similarity=0.529  Sum_probs=34.4

Q ss_pred             CCCCcEEEEEEEEEEEeCCCCceEEEecccceeeEeecCcccccccccc
Q 026621            7 LGLGWEVYVIFRLFVLDQNKDEFLILQDAMGKERRFHVLKLEWGFDQFI   55 (236)
Q Consensus         7 ~~~~w~~~a~f~~~l~n~~~~~~~~~~~~~~~~~~F~~~~~~wG~~~fi   55 (236)
                      .+.+|++.|+|+|.|+||.+...  .+.   ..++|.. ..+|||.+||
T Consensus        53 ~~~~w~v~a~~~~~l~~~~~~~~--~~~---~~~~F~~-~~~~G~~~fi   95 (95)
T smart00061       53 DSRKWSIEAEFTLKLVSQNGKSL--SKK---DKHVFEK-PSGWGFSKFI   95 (95)
T ss_pred             CCCCeEEEEEEEEEEEeCCCCEE--eee---eeEEEcC-CCccceeeEC
Confidence            34589999999999999986544  223   6789987 6899999986

>KOG1863 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]

Probab=97.05  E-value=0.00022  Score=70.96  Aligned_cols=70  Identities=17%  Similarity=0.213  Sum_probs=61.7

Q ss_pred             CCcEEEEEEEEEEEeCCCCceEEEecccceeeEeecCcccccccccccccccccCCCCeEeCCEEEEEEEEEE
Q 026621            9 LGWEVYVIFRLFVLDQNKDEFLILQDAMGKERRFHVLKLEWGFDQFIPLEEFNDASNGYLVGDTCVFGAEVLV   81 (236)
Q Consensus         9 ~~w~~~a~f~~~l~n~~~~~~~~~~~~~~~~~~F~~~~~~wG~~~fi~~~~l~~~~~gyl~~d~~~i~~~v~i   81 (236)
                      ..|+|++.+.+.+.|..++.....+.   ++|+|.....+||+.+|+.+.++.++..||+.+|++.++++|.+
T Consensus        82 ~~~s~~~~~~~~v~~~~~~~~~~~~~---~~h~~~~~~~dwg~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v  151 (1093)
T KOG1863|consen   82 KSWSCGAQAVLRVKNTIDNLPDPEKA---IHHVFTADERDWGFSCFSTSSDIRKPEDGYVRNGLEKLEKRVRV  151 (1093)
T ss_pred             cceEecchhhhccccCCCCchhhhhh---hhhcccccccchhhccchhHhhccCcccccccccceeeeeeeee
Confidence            34999999999999955555555544   88999999999999999999999999999999999999999993

>cd03783 MATH_Meprin_Alpha Meprin family, Alpha subunit, MATH domain; Meprins are multidomain extracellular metalloproteases capable of cleaving growth factors, cytokines, extracellular matrix proteins, and biologically active peptides

Probab=96.82  E-value=0.0014  Score=50.99  Aligned_cols=69  Identities=19%  Similarity=0.330  Sum_probs=46.7

Q ss_pred             CCcEEE-EEEEEEEEeCCC---CceEE----Eecccce------eeEeec--------------Cccccccccccccccc
Q 026621            9 LGWEVY-VIFRLFVLDQNK---DEFLI----LQDAMGK------ERRFHV--------------LKLEWGFDQFIPLEEF   60 (236)
Q Consensus         9 ~~w~~~-a~f~~~l~n~~~---~~~~~----~~~~~~~------~~~F~~--------------~~~~wG~~~fi~~~~l   60 (236)
                      ..|.+. -+.+|.|++|..   ...+.    ..+....      .-.|..              ...++||+.||+++.|
T Consensus        70 L~WP~~~~~itl~llDQ~~~~~~r~~~~~sf~~d~~~~~~~~~~~~~f~rP~~~~~~~~~~~~~~~~gfG~~~Fish~~L  149 (167)
T cd03783          70 LEWPALNRQAIITVLDQDPDVRLRMSSSRSFTTDKSQTSSAINGTLRWDRPSRVGTYDTSCDCFRGIDFGWSTFISHSQL  149 (167)
T ss_pred             ccCCCcCCEEEEEEEcCCcchhhccccceeeecCCCcccccccccccccCCcccccccccccccCCcccccccceeHHHH
Confidence            689965 589999999963   22222    1110000      012432              2458999999999999


Q ss_pred             ccCCCCeEeCCEEEEEEEE
Q 026621           61 NDASNGYLVGDTCVFGAEV   79 (236)
Q Consensus        61 ~~~~~gyl~~d~~~i~~~v   79 (236)
                      ..  .+||.||++.|.+++
T Consensus       150 ~~--r~yikdDtlfI~~~~  166 (167)
T cd03783         150 RR--RSFLKNDDLIIFVDF  166 (167)
T ss_pred             hh--CCcccCCeEEEEEec
Confidence            84  789999999998775

They are composed of two related subunits, alpha and beta, which form homo- or hetro-complexes where the basic unit is a disulfide-linked dimer. The alpha subunit is synthesized as a membrane spanning protein, however, it is cleaved during biosynthesis and loses its transmembrane domain. It oligomerizes into large complexes, containing 10-100 subunits (dimers that associate noncovalently), which are secreted as latent proteases and can move through extracellular spaces in a nondestructive manner. This allows delivery of the concentrated protease to sites containing activating enzymes, such as sites of inflammation, infection or cancerous growth. Meprin alpha shows preference for small or hydrophobic residues at the P1 and P1' sites of its substrate. Both

>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]

Probab=96.51  E-value=0.002  Score=57.25  Aligned_cols=80  Identities=23%  Similarity=0.348  Sum_probs=68.9

Q ss_pred             cCCCCeEEEEEccccccc-------CceeecccEEe--CCeEEEEEEecCCCCCCCCceEEEEEEecCCCCC-CCCCeEE
Q 026621           99 SASNYKHVWKIENFSKLE-------AKLYESEVFVA--GNQKWKIKLYPKGQGVGRGSHISVYLALADLSTI-TRDSKIY  168 (236)
Q Consensus        99 ~~~~~~~~w~I~nfs~l~-------~~~~~S~~f~~--gg~~W~l~~yp~G~~~~~~~~lsiyL~~~~~~~~-~~~w~~~  168 (236)
                      ....+...|+|.+++..+       ...++|+.|..  .|++-+.++|-+|++.+.+.++|+|+.+..++.. ...|+++
T Consensus       276 ~~~~g~~iwki~~~~~~~~e~~~~~~~~~~S~~f~t~~~Gyk~~~~~~lng~g~~~~~~~s~~~~~~~ge~d~~l~wpf~  355 (391)
T KOG0297|consen  276 RSYDGTLIWKIPDYGRKKQEAVAGATLSLFSPAFYTSKYGYKLCARIYLNGDGTGKGTHLSLYFVVMRGEYDALLPWPFR  355 (391)
T ss_pred             hccCCEEEEEecchhhhhHHHHhccCccccccccccccccHHHHhHhhhcCCCCCCcceeeeeeeecccCcccccccCCC
Confidence            466899999999996543       35688999974  7999999999999988888999999999988764 4689999


Q ss_pred             EEEEEEEEeC
Q 026621          169 VHFTLRIRDQ  178 (236)
Q Consensus       169 ~~f~l~l~n~  178 (236)
                      -++++.+++|
T Consensus       356 ~~v~~~l~dq  365 (391)
T KOG0297|consen  356 QKVTLMLLDQ  365 (391)
T ss_pred             CceEEEEecc
Confidence            9999999999

>cd03782 MATH_Meprin_Beta Meprin family, Beta subunit, MATH domain; Meprins are multidomain extracellular metalloproteases capable of cleaving growth factors, cytokines, extracellular matrix proteins, and biologically active peptides

Probab=96.28  E-value=0.0068  Score=47.02  Aligned_cols=69  Identities=17%  Similarity=0.301  Sum_probs=48.3

Q ss_pred             CCcEEE-EEEEEEEEeCCC---CceEEEe----cccceee---Ee--ecC-----------------ccccccccccccc
Q 026621            9 LGWEVY-VIFRLFVLDQNK---DEFLILQ----DAMGKER---RF--HVL-----------------KLEWGFDQFIPLE   58 (236)
Q Consensus         9 ~~w~~~-a~f~~~l~n~~~---~~~~~~~----~~~~~~~---~F--~~~-----------------~~~wG~~~fi~~~   58 (236)
                      ..|.+. -+.+|.|++|..   ...+...    +..-+..   .|  ...                 ..++|++.||+++
T Consensus        68 L~WPf~~~qit~~LlDQ~~d~~~r~~~~~~~t~~P~~~s~~n~~f~w~rP~kvg~~~~~~~~~~~~r~~~~G~~~Fish~  147 (167)
T cd03782          68 LQWPCPWQQATMMLLDQHPDIRQRMSNQRSVTTDPNMTSTDSDEYFWDDPRKVGSEVTDTDGSTFYRGPGYGTSAFITHL  147 (167)
T ss_pred             ccCCCcCCeEEEEEEcCCCchhhccceeeeEEecCCcccccCccceecCCcccCcccccccccccccccccCccceeeHH
Confidence            689999 899999999963   2233222    1000011   24  222                 4789999999999


Q ss_pred             ccccCCCCeEeCCEEEEEEEE
Q 026621           59 EFNDASNGYLVGDTCVFGAEV   79 (236)
Q Consensus        59 ~l~~~~~gyl~~d~~~i~~~v   79 (236)
                      .|..  ..||.||.+.|-+++
T Consensus       148 ~L~~--r~yikdD~ifi~~~~  166 (167)
T cd03782         148 RLRS--RDFIKGDDVIFLLTM  166 (167)
T ss_pred             HHhh--cCcccCCeEEEEEec
Confidence            9985  789999999987765

They are composed of two related subunits, alpha and beta, which form homo- or hetro-complexes where the basic unit is a disulfide-linked dimer. The beta subunit is a type I membrane protein, which forms homodimers or heterotetramers (alpha2beta2 or alpha3beta). Meprin beta shows preference for acidic residues at the P1 and P1' sites of its substrate. Among its best substrates are growth factors and chemokines such as gastrin and osteopontin. Both alpha and beta subunits contain a catalytic astacin (M12 family) protease domain followed by the adhesion or interaction domains MAM, MATH and AM. The MATH and MAM domains provide symmetrical intersubunit disulfide bonds necessary for the dimerization of meprin subunits. The MATH domain may also be required for f

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	236
2foj_A	155	Ubiquitin carboxyl-terminal hydrolase 7; MATH doma	2e-30
2foj_A	155	Ubiquitin carboxyl-terminal hydrolase 7; MATH doma	2e-12
3ivv_A	145	Speckle-type POZ protein; protein binding, nucleus	3e-27
3ivv_A	145	Speckle-type POZ protein; protein binding, nucleus	1e-10
2f1z_A	522	Ubiquitin carboxyl-terminal hydrolase 7; hausp, US	7e-19
2f1z_A	522	Ubiquitin carboxyl-terminal hydrolase 7; hausp, US	4e-05
1ca9_A	192	TRAF2, protein (TNF receptor associated factor 2);	2e-18
1ca9_A	192	TRAF2, protein (TNF receptor associated factor 2);	4e-06
1d00_A	168	Tumor necrosis factor receptor associated protein	3e-18
1d00_A	168	Tumor necrosis factor receptor associated protein	3e-06
3hqi_A	312	Speckle-type POZ protein; SPOP, ubiquitin, puckere	3e-18
2gkw_A	192	TNF receptor-associated factor 3; CD40, NF-KB sign	9e-16
2gkw_A	192	TNF receptor-associated factor 3; CD40, NF-KB sign	8e-06
1lb6_A	160	TNF receptor-associated factor 6; TRAF6-CD40 compl	4e-15
1lb6_A	160	TNF receptor-associated factor 6; TRAF6-CD40 compl	6e-06
1flk_A	228	TNF receptor associated factor 3; TNF signaling, T	5e-15
1flk_A	228	TNF receptor associated factor 3; TNF signaling, T	2e-05

>2foj_A Ubiquitin carboxyl-terminal hydrolase 7; MATH domain, hydrolase; 1.60A {Homo sapiens} PDB: 1yze_A 1yy6_A 2foo_A 2fop_A 3mqr_A 3mqs_C 2f1w_A 2f1x_A 2f1y_A 2xxn_A Length = 155

 Score =  109 bits (274), Expect = 2e-30
 Identities = 27/128 (21%), Positives = 47/128 (36%), Gaps = 4/128 (3%)

Query: 104 KHVWKIENFSKLEAKLYESEVFVAGNQKWKIKLYPKGQGVGR-GSHISVYLALADLSTIT 162
              + +E FS+L   +  S      N  WKI + P+          +  +L   +  + +
Sbjct: 20  TFQFTVERFSRLSESVL-SPPCFVRNLPWKIMVMPRFYPDRPHQKSVGFFLQC-NAESDS 77

Query: 163 RDSKIYVHFTLRIRDQV-LSKHNEKKASTWLSTSSEDWGWSTFVELSYFNKAENGFLMND 221
                +    L+I +     K   ++ S        DWG+S F+  S     E GF+ +D
Sbjct: 78  TSWSCHAQAVLKIINYRDDEKSFSRRISHLFFHKENDWGFSNFMAWSEVTDPEKGFIDDD 137

Query: 222 VCIVEAEV 229
               E  V
Sbjct: 138 KVTFEVFV 145

>2foj_A Ubiquitin carboxyl-terminal hydrolase 7; MATH domain, hydrolase; 1.60A {Homo sapiens} PDB: 1yze_A 1yy6_A 2foo_A 2fop_A 3mqr_A 3mqs_C 2f1w_A 2f1x_A 2f1y_A 2xxn_A Length = 155

 Score = 62.2 bits (151), Expect = 2e-12
 Identities = 16/81 (19%), Positives = 27/81 (33%), Gaps = 3/81 (3%)

Query: 3   DTSSLGLGWEVYVIFRLFVLDQNKDEFLILQDAMGKERRFHVLKLEWGFDQFIPLEEFND 62
           +  S    W  +    L +++   DE    +        F   + +WGF  F+   E  D
Sbjct: 72  NAESDSTSWSCHAQAVLKIINYRDDEKSFSRRI---SHLFFHKENDWGFSNFMAWSEVTD 128

Query: 63  ASNGYLVGDTCVFGAEVLVKE 83
              G++  D   F   V    
Sbjct: 129 PEKGFIDDDKVTFEVFVQADA 149

>3ivv_A Speckle-type POZ protein; protein binding, nucleus, UBL conjugation pathway, ligase; 1.25A {Homo sapiens} PDB: 3ivq_A 3ivb_A 3hsv_A 3hqh_A 3hqm_A 3hql_A 2cr2_A Length = 145

 Score =  101 bits (252), Expect = 3e-27
 Identities = 30/139 (21%), Positives = 55/139 (39%), Gaps = 11/139 (7%)

Query: 98  TSASNYKHVWKIENFSKLEA---KLYESEVFVAG---NQKWKIKLYPKGQGVGRGSHISV 151
                + ++W I NFS       ++ +S  F +G     KW +++ PKG       ++S+
Sbjct: 6   GKVVKFSYMWTINNFSFCREEMGEVIKSSTFSSGANDKLKWCLRVNPKGLDEESKDYLSL 65

Query: 152 YLALADLSTITRDSKIYVHFTLRIRDQVLSK-HNEKKASTWLSTSSEDWGWSTFVELSYF 210
           YL L         S++   F   I +    +    +    +     +DWG+  F+   + 
Sbjct: 66  YLLLVS----CPKSEVRAKFKFSILNAKGEETKAMESQRAYRFVQGKDWGFKKFIRRDFL 121

Query: 211 NKAENGFLMNDVCIVEAEV 229
               NG L +D   +  EV
Sbjct: 122 LDEANGLLPDDKLTLFCEV 140

>3ivv_A Speckle-type POZ protein; protein binding, nucleus, UBL conjugation pathway, ligase; 1.25A {Homo sapiens} PDB: 3ivq_A 3ivb_A 3hsv_A 3hqh_A 3hqm_A 3hql_A 2cr2_A Length = 145

 Score = 56.9 bits (137), Expect = 1e-10
 Identities = 19/72 (26%), Positives = 29/72 (40%), Gaps = 3/72 (4%)

Query: 10  GWEVYVIFRLFVLDQNKDEFLILQDAMGKERRFHVLKLEWGFDQFIPLEEFNDASNGYLV 69
             EV   F+  +L+   +E   ++          V   +WGF +FI  +   D +NG L 
Sbjct: 74  KSEVRAKFKFSILNAKGEETKAMESQR---AYRFVQGKDWGFKKFIRRDFLLDEANGLLP 130

Query: 70  GDTCVFGAEVLV 81
            D      EV V
Sbjct: 131 DDKLTLFCEVSV 142

>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens} Length = 522

 Score = 83.9 bits (207), Expect = 7e-19
 Identities = 28/135 (20%), Positives = 51/135 (37%), Gaps = 4/135 (2%)

Query: 97  LTSASNYKHVWKIENFSKLEAKLYESEVFVAGNQKWKIKLYPKGQGVGRG-SHISVYLAL 155
            +  S     + +E FS+L   +  S      N  WKI + P+          +  +L  
Sbjct: 25  TSWRSEATFQFTVERFSRLSESVL-SPPCFVRNLPWKIMVMPRFYPDRPHQKSVGFFLQ- 82

Query: 156 ADLSTITRDSKIYVHFTLRIRDQVLSKHNEKKASTWLSTSSE-DWGWSTFVELSYFNKAE 214
            +  + +     +    L+I +    + +  +  + L    E DWG+S F+  S     E
Sbjct: 83  CNAESDSTSWSCHAQAVLKIINYRDDEKSFSRRISHLFFHKENDWGFSNFMAWSEVTDPE 142

Query: 215 NGFLMNDVCIVEAEV 229
            GF+ +D    E  V
Sbjct: 143 KGFIDDDKVTFEVFV 157

>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens} Length = 522

 Score = 43.0 bits (101), Expect = 4e-05
 Identities = 15/76 (19%), Positives = 26/76 (34%), Gaps = 3/76 (3%)

Query: 10  GWEVYVIFRLFVLDQNKDEFLILQDAMGKERRFHVLKLEWGFDQFIPLEEFNDASNGYLV 69
            W  +    L +++   DE    +        F   + +WGF  F+   E  D   G++ 
Sbjct: 91  SWSCHAQAVLKIINYRDDEKSFSRRI---SHLFFHKENDWGFSNFMAWSEVTDPEKGFID 147

Query: 70  GDTCVFGAEVLVKERN 85
            D   F   V     +
Sbjct: 148 DDKVTFEVFVQADAPH 163

>1ca9_A TRAF2, protein (TNF receptor associated factor 2); TNF signaling, TRAF, adapter protein, cell surviVal; 2.30A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1qsc_A 1czz_A Length = 192

 Score = 79.3 bits (195), Expect = 2e-18
 Identities = 31/151 (20%), Positives = 57/151 (37%), Gaps = 20/151 (13%)

Query: 98  TSASNYKHVWKIENFSKL-------EAKLYESEVFVAGNQ--KWKIKLYPKGQGVGRGSH 148
            S  +   +WKI +F++              S  F       K  +++Y  G G GRG+H
Sbjct: 38  ASTYDGVFIWKISDFARKRQEAVAGRIPAIFSPAFYTSRYGYKMCLRIYLNGDGTGRGTH 97

Query: 149 ISVYLALADLST-ITRDSKIYVHFTLRIRDQVLSKHNEKKASTWLSTSS---------ED 198
           +S++  +                 TL + DQ   +H        +++SS           
Sbjct: 98  LSLFFVVMKGPNDALLRWPFNQKVTLMLLDQNNREHVIDAFRPDVTSSSFQRPVNDMNIA 157

Query: 199 WGWSTFVELSYFNKAENGFLMNDVCIVEAEV 229
            G   F  +S   +A+N ++ +D   ++A V
Sbjct: 158 SGCPLFCPVSKM-EAKNSYVRDDAIFIKAIV 187

>1ca9_A TRAF2, protein (TNF receptor associated factor 2); TNF signaling, TRAF, adapter protein, cell surviVal; 2.30A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1qsc_A 1czz_A Length = 192

 Score = 45.0 bits (106), Expect = 4e-06
 Identities = 19/76 (25%), Positives = 29/76 (38%), Gaps = 6/76 (7%)

Query: 9   LGWEVYVIFRLFVLDQN-----KDEFLILQDAMGKERRFHVLKLEWGFDQFIPLEEFNDA 63
           L W       L +LDQN      D F     +   +R  + + +  G   F P+ +  +A
Sbjct: 113 LRWPFNQKVTLMLLDQNNREHVIDAFRPDVTSSSFQRPVNDMNIASGCPLFCPVSKM-EA 171

Query: 64  SNGYLVGDTCVFGAEV 79
            N Y+  D     A V
Sbjct: 172 KNSYVRDDAIFIKAIV 187

>1d00_A Tumor necrosis factor receptor associated protein 2; B-sandwich, protein-peptide complex, apoptosis; 2.00A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1ca4_A 1d0j_A 1f3v_B 1czy_A 1d01_A 1d0a_A Length = 168

 Score = 78.1 bits (192), Expect = 3e-18
 Identities = 31/151 (20%), Positives = 57/151 (37%), Gaps = 20/151 (13%)

Query: 98  TSASNYKHVWKIENFSKL-------EAKLYESEVFVAGNQ--KWKIKLYPKGQGVGRGSH 148
            S  +   +WKI +F++              S  F       K  +++Y  G G GRG+H
Sbjct: 14  ASTYDGVFIWKISDFARKRQEAVAGRIPAIFSPAFYTSRYGYKMCLRIYLNGDGTGRGTH 73

Query: 149 ISVYLALADLST-ITRDSKIYVHFTLRIRDQVLSKHNEKKASTWLSTSS---------ED 198
           +S++  +                 TL + DQ   +H        +++SS           
Sbjct: 74  LSLFFVVMKGPNDALLRWPFNQKVTLMLLDQNNREHVIDAFRPDVTSSSFQRPVNDMNIA 133

Query: 199 WGWSTFVELSYFNKAENGFLMNDVCIVEAEV 229
            G   F  +S   +A+N ++ +D   ++A V
Sbjct: 134 SGCPLFCPVSKM-EAKNSYVRDDAIFIKAIV 163

>1d00_A Tumor necrosis factor receptor associated protein 2; B-sandwich, protein-peptide complex, apoptosis; 2.00A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1ca4_A 1d0j_A 1f3v_B 1czy_A 1d01_A 1d0a_A Length = 168

 Score = 45.0 bits (106), Expect = 3e-06
 Identities = 19/76 (25%), Positives = 29/76 (38%), Gaps = 6/76 (7%)

Query: 9   LGWEVYVIFRLFVLDQN-----KDEFLILQDAMGKERRFHVLKLEWGFDQFIPLEEFNDA 63
           L W       L +LDQN      D F     +   +R  + + +  G   F P+ +  +A
Sbjct: 89  LRWPFNQKVTLMLLDQNNREHVIDAFRPDVTSSSFQRPVNDMNIASGCPLFCPVSKM-EA 147

Query: 64  SNGYLVGDTCVFGAEV 79
            N Y+  D     A V
Sbjct: 148 KNSYVRDDAIFIKAIV 163

>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A Length = 312

 Score = 80.7 bits (199), Expect = 3e-18
 Identities = 29/131 (22%), Positives = 52/131 (39%), Gaps = 11/131 (8%)

Query: 98  TSASNYKHVWKIENFSKLEAKLYE---SEVFVAG---NQKWKIKLYPKGQGVGRGSHISV 151
           +    + ++W I NFS    ++ E   S  F +G     KW +++ PKG       ++S+
Sbjct: 2   SKVVKFSYMWTINNFSFCREEMGEVIKSSTFSSGANDKLKWCLRVNPKGLDEESKDYLSL 61

Query: 152 YLALADLSTITRDSKIYVHFTLRIRDQV-LSKHNEKKASTWLSTSSEDWGWSTFVELSYF 210
           YL L         S++   F   I +         +    +     +DWG+  F+   + 
Sbjct: 62  YLLLVS----CPKSEVRAKFKFSILNAKGEETKAMESQRAYRFVQGKDWGFKKFIRRGFL 117

Query: 211 NKAENGFLMND 221
               NG L +D
Sbjct: 118 LDEANGLLPDD 128

>2gkw_A TNF receptor-associated factor 3; CD40, NF-KB signaling, BAFF receptor, TRAF3, apoptosis; 2.70A {Homo sapiens} PDB: 1kzz_A 1l0a_A 1zms_A 1rf3_A Length = 192

 Score = 72.0 bits (176), Expect = 9e-16
 Identities = 30/160 (18%), Positives = 58/160 (36%), Gaps = 22/160 (13%)

Query: 90  ECLFLAKLTSASNYKHVWKIENFSKLEAKLYE-------SEVFVAGNQ--KWKIKLYPKG 140
           +  F    T++ N   +WKI ++ + + +          S+ F  G    K   ++Y  G
Sbjct: 27  DLRFQVLETASYNGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNG 86

Query: 141 QGVGRGSHISVYLALADLST-ITRDSKIYVHFTLRIRDQVLSKHNEKKASTWLSTSS--- 196
            G+G+G+H+S++  +                 TL + DQ  S+ +   A      SS   
Sbjct: 87  DGMGKGTHLSLFFVIMRGEYDALLPWPFKQKVTLMLMDQGSSRRHLGDAFKPDPNSSSFK 146

Query: 197 -------EDWGWSTFVELSYFNKAENGFLMNDVCIVEAEV 229
                     G   FV  +        ++ +D   ++  V
Sbjct: 147 KPTGEMNIASGCPVFVAQTVLEN--GTYIKDDTIFIKVIV 184

>2gkw_A TNF receptor-associated factor 3; CD40, NF-KB signaling, BAFF receptor, TRAF3, apoptosis; 2.70A {Homo sapiens} PDB: 1kzz_A 1l0a_A 1zms_A 1rf3_A Length = 192

 Score = 44.2 bits (104), Expect = 8e-06
 Identities = 11/77 (14%), Positives = 21/77 (27%), Gaps = 8/77 (10%)

Query: 9   LGWEVYVIFRLFVLDQNKDEFLILQDAMGK------ERRFHVLKLEWGFDQFIPLEEFND 62
           L W       L ++DQ      +             ++    + +  G   F+       
Sbjct: 110 LPWPFKQKVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPVFVAQTVLE- 168

Query: 63  ASNGYLVGDTCVFGAEV 79
            +  Y+  DT      V
Sbjct: 169 -NGTYIKDDTIFIKVIV 184

>1lb6_A TNF receptor-associated factor 6; TRAF6-CD40 complex, signaling protein; 1.80A {Homo sapiens} SCOP: b.8.1.1 PDB: 1lb5_A 1lb4_A Length = 160

 Score = 69.6 bits (170), Expect = 4e-15
 Identities = 26/150 (17%), Positives = 51/150 (34%), Gaps = 26/150 (17%)

Query: 104 KHVWKIENFSKL-------EAKLYESEVFVAGNQ--KWKIKLYPKGQGVGR-GSHISVYL 153
            ++WKI NF          +  +  S  F  G    K  ++L+ +     R  ++IS+++
Sbjct: 6   IYIWKIGNFGMHLKCQEEEKPVVIHSPGFYTGKPGYKLCMRLHLQLPTAQRCANYISLFV 65

Query: 154 ALADLST-ITRDSKIYVHFTLRIRDQVLSKHNEKKASTWLST-------------SSEDW 199
                               L I DQ  +   +       +              + + +
Sbjct: 66  HTMQGEYDSHLPWPFQGTIRLTILDQSEAPVRQNHEEIMDAKPELLAFQRPTIPRNPKGF 125

Query: 200 GWSTFVELSYFNKAENGFLMNDVCIVEAEV 229
           G+ TF+ L    +    F+ +D  +V  EV
Sbjct: 126 GYVTFMHLEALRQ--RTFIKDDTLLVRCEV 153

>1lb6_A TNF receptor-associated factor 6; TRAF6-CD40 complex, signaling protein; 1.80A {Homo sapiens} SCOP: b.8.1.1 PDB: 1lb5_A 1lb4_A Length = 160

 Score = 44.1 bits (104), Expect = 6e-06
 Identities = 18/83 (21%), Positives = 31/83 (37%), Gaps = 11/83 (13%)

Query: 9   LGWEVYVIFRLFVLDQNKDE----FLILQDAMGKERRFHVLKLE-----WGFDQFIPLEE 59
           L W      RL +LDQ++         + DA  +   F    +      +G+  F+ LE 
Sbjct: 76  LPWPFQGTIRLTILDQSEAPVRQNHEEIMDAKPELLAFQRPTIPRNPKGFGYVTFMHLEA 135

Query: 60  FNDASNGYLVGDTCVFGAEVLVK 82
                  ++  DT +   EV  +
Sbjct: 136 LR--QRTFIKDDTLLVRCEVSTR 156

>1flk_A TNF receptor associated factor 3; TNF signaling, TRAF3, CD40-binding protein, apoptosis; 2.80A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1fll_A Length = 228

 Score = 70.9 bits (173), Expect = 5e-15
 Identities = 31/169 (18%), Positives = 60/169 (35%), Gaps = 22/169 (13%)

Query: 81  VKERNKCKGECLFLAKLTSASNYKHVWKIENFSKLEAKLYE-------SEVFVAGNQ--K 131
           V +      +  F    T++ N   +WKI ++ + + +          S+ F  G    K
Sbjct: 54  VHDIRLADMDLRFQVLETASYNGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYK 113

Query: 132 WKIKLYPKGQGVGRGSHISVYLALADLST-ITRDSKIYVHFTLRIRDQVLSKHNEKKAST 190
              ++Y  G G+G+G+H+S++  +                 TL + DQ  S+ +   A  
Sbjct: 114 MCARVYLNGDGMGKGTHLSLFFVIMRGEYDALLPWPFKQKVTLMLMDQGSSRRHLGDAFK 173

Query: 191 WLSTSS----------EDWGWSTFVELSYFNKAENGFLMNDVCIVEAEV 229
               SS             G   FV  +        ++ +D   ++  V
Sbjct: 174 PDPNSSSFKKPTGEMNIASGCPVFVAQTVLEN--GTYIKDDTIFIKVIV 220

>1flk_A TNF receptor associated factor 3; TNF signaling, TRAF3, CD40-binding protein, apoptosis; 2.80A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1fll_A Length = 228

 Score = 43.5 bits (102), Expect = 2e-05
 Identities = 13/77 (16%), Positives = 24/77 (31%), Gaps = 8/77 (10%)

Query: 9   LGWEVYVIFRLFVLDQN------KDEFLILQDAMGKERRFHVLKLEWGFDQFIPLEEFND 62
           L W       L ++DQ        D F    ++   ++    + +  G   F+       
Sbjct: 146 LPWPFKQKVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPVFVAQTVLE- 204

Query: 63  ASNGYLVGDTCVFGAEV 79
            +  Y+  DT      V
Sbjct: 205 -NGTYIKDDTIFIKVIV 220

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	236
2foj_A	155	Ubiquitin carboxyl-terminal hydrolase 7; MATH doma	99.98
3ivv_A	145	Speckle-type POZ protein; protein binding, nucleus	99.97
4gjh_A	178	TNF receptor-associated factor 5; TRAF domain, imm	99.96
1ca9_A	192	TRAF2, protein (TNF receptor associated factor 2);	99.95
1d00_A	168	Tumor necrosis factor receptor associated protein	99.95
4ghu_A	198	TNF receptor-associated factor 3; alpha/beta, inna	99.94
1lb6_A	160	TNF receptor-associated factor 6; TRAF6-CD40 compl	99.94
2gkw_A	192	TNF receptor-associated factor 3; CD40, NF-KB sign	99.94
1flk_A	228	TNF receptor associated factor 3; TNF signaling, T	99.93
3hqi_A	312	Speckle-type POZ protein; SPOP, ubiquitin, puckere	99.93
2f1z_A	522	Ubiquitin carboxyl-terminal hydrolase 7; hausp, US	99.93
2foj_A	155	Ubiquitin carboxyl-terminal hydrolase 7; MATH doma	99.56
3ivv_A	145	Speckle-type POZ protein; protein binding, nucleus	99.46
4gwm_A	592	Meprin A subunit beta; mulidomain structure, hydro	99.42
2f1z_A	522	Ubiquitin carboxyl-terminal hydrolase 7; hausp, US	99.22
4gjh_A	178	TNF receptor-associated factor 5; TRAF domain, imm	99.17
3hqi_A	312	Speckle-type POZ protein; SPOP, ubiquitin, puckere	99.06
1d00_A	168	Tumor necrosis factor receptor associated protein	98.98
1ca9_A	192	TRAF2, protein (TNF receptor associated factor 2);	98.93
1lb6_A	160	TNF receptor-associated factor 6; TRAF6-CD40 compl	98.85
2gkw_A	192	TNF receptor-associated factor 3; CD40, NF-KB sign	98.84
4ghu_A	198	TNF receptor-associated factor 3; alpha/beta, inna	98.83
1flk_A	228	TNF receptor associated factor 3; TNF signaling, T	98.78
4gwm_A	592	Meprin A subunit beta; mulidomain structure, hydro	92.29

>2foj_A Ubiquitin carboxyl-terminal hydrolase 7; MATH domain, hydrolase; 1.60A {Homo sapiens} PDB: 1yze_A 1yy6_A 2foo_A 2fop_A 3mqr_A 3mqs_C 2f1w_A 2f1x_A 2f1y_A 2xxn_A

Probab=99.98  E-value=5.1e-32  Score=209.22  Aligned_cols=134  Identities=20%  Similarity=0.265  Sum_probs=115.0

Q ss_pred             CCCCeEEEEEcccccccCceeecccEEeCCeEEEEEEecCCCCC-CCCceEEEEEEecCCCCCCCCCeEEEEEEEEEEeC
Q 026621          100 ASNYKHVWKIENFSKLEAKLYESEVFVAGNQKWKIKLYPKGQGV-GRGSHISVYLALADLSTITRDSKIYVHFTLRIRDQ  178 (236)
Q Consensus       100 ~~~~~~~w~I~nfs~l~~~~~~S~~f~~gg~~W~l~~yp~G~~~-~~~~~lsiyL~~~~~~~~~~~w~~~~~f~l~l~n~  178 (236)
                      ...++|+|+|+|||.++ +.++|++|.+||++|+|++||+|+.. +.++||||||+|... ..+.+|+++|+|+|+|+||
T Consensus        16 ~~~~~~~w~I~nfS~~~-~~~~S~~f~~gg~~W~i~~yP~G~~~~~~~~~lSlyL~~~~~-~~~~~w~v~a~~~l~l~~~   93 (155)
T 2foj_A           16 RSEATFQFTVERFSRLS-ESVLSPPCFVRNLPWKIMVMPRFYPDRPHQKSVGFFLQCNAE-SDSTSWSCHAQAVLKIINY   93 (155)
T ss_dssp             CSEEEEEEEESSGGGCC-SCEECCCEEETTEEEEEEEEEEC------CBEEEEEEEESTT-CCCSSCEEEEEEEEEECCS
T ss_pred             CCCcEEEEEECChhhcC-CceEcCCEEECCccEEEEEEECCCCCCCCCCEEEEEEEeCCC-CCCCCCEEEEEEEEEEEcC
Confidence            45688999999999996 77999999999999999999999765 346899999999654 4466799999999999999


Q ss_pred             CCCc-ceeeeceeeecCCCCCCchhccccccccccCCCCceECCEEEEEEEEEEEEec
Q 026621          179 VLSK-HNEKKASTWLSTSSEDWGWSTFVELSYFNKAENGFLMNDVCIVEAEVLRISKA  235 (236)
Q Consensus       179 ~~~~-~~~~~~~~~F~~~~~~~G~~~Fi~~~~L~~~~~gyl~~D~l~ie~~v~v~~~t  235 (236)
                      .++. +..+...++|.....+|||.+||++++|+++++|||+||+|+|+|+|+|.++|
T Consensus        94 ~~~~~~~~~~~~~~F~~~~~~wG~~~Fi~~~~L~~~~~~yl~dD~l~Ie~~V~V~~~t  151 (155)
T 2foj_A           94 RDDEKSFSRRISHLFFHKENDWGFSNFMAWSEVTDPEKGFIDDDKVTFEVFVQADAPH  151 (155)
T ss_dssp             SCGGGCEEEEEEEEEETTBCEEEEEEEEEHHHHTCTTTSSCBTTBEEEEEEEEECCCB
T ss_pred             CCCcceEEeccEEEeCCCCCCEeECCeEEHHHhcCcCCCceECCEEEEEEEEEEeCcc
Confidence            8865 55566778898767889999999999999888999999999999999998876

>3ivv_A Speckle-type POZ protein; protein binding, nucleus, UBL conjugation pathway, ligase; 1.25A {Homo sapiens} SCOP: b.8.1.1 PDB: 3ivq_A 3ivb_A 3hsv_A 3hqh_A 3hqm_A 3hql_A 2cr2_A

Probab=99.97  E-value=1.1e-30  Score=199.66  Aligned_cols=131  Identities=24%  Similarity=0.478  Sum_probs=113.3

Q ss_pred             cCCCCeEEEEEccccccc---CceeecccEEeCCe---EEEEEEecCCCCCCCCceEEEEEEecCCCCCCCCCeEEEEEE
Q 026621           99 SASNYKHVWKIENFSKLE---AKLYESEVFVAGNQ---KWKIKLYPKGQGVGRGSHISVYLALADLSTITRDSKIYVHFT  172 (236)
Q Consensus        99 ~~~~~~~~w~I~nfs~l~---~~~~~S~~f~~gg~---~W~l~~yp~G~~~~~~~~lsiyL~~~~~~~~~~~w~~~~~f~  172 (236)
                      ....++|+|+|+|||.++   ++.++|++|.+||+   +|+|++||+|+..+..+||||||+|.+.    +.|+++|+|+
T Consensus         7 ~~~~~~~~w~I~~fs~~~~~~g~~~~S~~F~~gg~~g~~W~i~~yP~G~~~~~~~~lSlyL~l~~~----~~w~v~a~f~   82 (145)
T 3ivv_A            7 KVVKFSYMWTINNFSFCREEMGEVIKSSTFSSGANDKLKWCLRVNPKGLDEESKDYLSLYLLLVSC----PKSEVRAKFK   82 (145)
T ss_dssp             CCCEEEEEEEESSGGGCCCCTTCCEECCCEEESGGGCEEEEEEEETTCSSGGGTTEEEEEEEEEEC----SSSEEEEEEE
T ss_pred             cEEEEEEEEEEcCchHHhhcCCCEEECCCcCCCCcCCceEEEEEEcCCCCCCCCCeEEEEEEEcCC----CCCcEEEEEE
Confidence            567789999999999986   47899999999996   9999999999876557899999999875    3799999999


Q ss_pred             EEEEeCCCCcce--eeeceeeecCCCCCCchhccccccccccCCCCceECCEEEEEEEEEEEEe
Q 026621          173 LRIRDQVLSKHN--EKKASTWLSTSSEDWGWSTFVELSYFNKAENGFLMNDVCIVEAEVLRISK  234 (236)
Q Consensus       173 l~l~n~~~~~~~--~~~~~~~F~~~~~~~G~~~Fi~~~~L~~~~~gyl~~D~l~ie~~v~v~~~  234 (236)
                      |+|+||.++.+.  .....++|. ...+|||.+||++++|+++++|||+||+|+|+|+|+|+++
T Consensus        83 l~llnq~~~~~~~~~~~~~~~F~-~~~~wG~~~Fi~~~~L~~~~~~yl~dD~l~I~~~V~V~~d  145 (145)
T 3ivv_A           83 FSILNAKGEETKAMESQRAYRFV-QGKDWGFKKFIRRDFLLDEANGLLPDDKLTLFCEVSVVQD  145 (145)
T ss_dssp             EEEECTTSCEEEEEECSSCEEEE-TTCEEEEEEEEEHHHHHCGGGCSSGGGCEEEEEEEEECC-
T ss_pred             EEEEecCCCceeeecccceEEec-CCCCcCHHHeEEhhhhccccCCcEeCCEEEEEEEEEEEeC
Confidence            999999987643  223567886 4678999999999999877789999999999999999863

>4gjh_A TNF receptor-associated factor 5; TRAF domain, immune system; 2.81A {Mus musculus}

Probab=99.96  E-value=4.6e-30  Score=202.59  Aligned_cols=136  Identities=20%  Similarity=0.274  Sum_probs=113.6

Q ss_pred             cCCCCeEEEEEcccccccC-------ceeecccEEeC--CeEEEEEEecCCCCCCCCceEEEEEEecCCCC-CCCCCeEE
Q 026621           99 SASNYKHVWKIENFSKLEA-------KLYESEVFVAG--NQKWKIKLYPKGQGVGRGSHISVYLALADLST-ITRDSKIY  168 (236)
Q Consensus        99 ~~~~~~~~w~I~nfs~l~~-------~~~~S~~f~~g--g~~W~l~~yp~G~~~~~~~~lsiyL~~~~~~~-~~~~w~~~  168 (236)
                      .+..+.|+|+|+|||.+++       ..+.|++|.+|  |++|+|++||+|+..+.++||||||+|.+++. ....|+++
T Consensus        20 ~~~~g~~~w~I~~fS~~~~~~~~g~~~~i~S~~F~~g~~G~~W~i~~yP~G~~~~~~~~lSlyL~l~~~~~d~~l~W~v~   99 (178)
T 4gjh_A           20 ACYSGKLIWKVTDYRVKKREAVEGHTVSVFSQPFYTSRCGYRLCARAYLNGDGSGKGTHLSLYFVVMRGEFDSLLQWPFR   99 (178)
T ss_dssp             CCSSSEEEEEECCHHHHHHHHHTTSCCCEECCCEESSTTSCEEEEEEETTCCGGGTTTEEEEEEEEBCCTTGGGSCSSCC
T ss_pred             cccceEEEEEECCHHHHHhhhhcCCCcEEECCCeEeCCCCeEEEEEEEECCCCCCCCCEEEEEEEEecCCCCcccCCceE
Confidence            5778999999999999863       27999999999  99999999999987766789999999987653 23579999


Q ss_pred             EEEEEEEEeCCCCc-ceeee-----ceeeecC----CCCCCchhccccccccccCCCCceECCEEEEEEEEEEEEe
Q 026621          169 VHFTLRIRDQVLSK-HNEKK-----ASTWLST----SSEDWGWSTFVELSYFNKAENGFLMNDVCIVEAEVLRISK  234 (236)
Q Consensus       169 ~~f~l~l~n~~~~~-~~~~~-----~~~~F~~----~~~~~G~~~Fi~~~~L~~~~~gyl~~D~l~ie~~v~v~~~  234 (236)
                      |+|+|.|+||.++. ++...     ..+.|+.    ...+|||.+||++++|++|.+|||+||+|+|+|+|.|.++
T Consensus       100 a~~~l~Lldq~~~~~~~~~~~~~~~~~~~F~~p~~~~~~~wG~~~Fi~~~~L~~~~~~yL~dD~l~I~~~V~i~~~  175 (178)
T 4gjh_A          100 QRVTLMLLDQSGKKNHIVETFKADPNSSSFKRPDGEMNIASGCPRFVSHSTLENSKNTYIKDDTLFLKVAVDLTDL  175 (178)
T ss_dssp             CEEEEEECCTTSSCCCEEEEEECCTTCGGGSCCSSSBCCCEEEEEEEEHHHHHCTTCCSSBTTBEEEEEEECCTTC
T ss_pred             EEEEEEEEcCCCCcceeEEeeccCCccccccCCcccccCCcChhheeEHHHhhccccCcCcCCEEEEEEEEEecCC
Confidence            99999999998753 43321     3456763    2468999999999999988889999999999999987653

>1ca9_A TRAF2, protein (TNF receptor associated factor 2); TNF signaling, TRAF, adapter protein, cell surviVal; 2.30A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1qsc_A 1czz_A

Probab=99.95  E-value=5e-29  Score=198.97  Aligned_cols=133  Identities=21%  Similarity=0.309  Sum_probs=110.4

Q ss_pred             CCCCeEEEEEcccccccC-----c--eeecccEEe--CCeEEEEEEecCCCCCCCCceEEEEEEecCCCCCC-CCCeEEE
Q 026621          100 ASNYKHVWKIENFSKLEA-----K--LYESEVFVA--GNQKWKIKLYPKGQGVGRGSHISVYLALADLSTIT-RDSKIYV  169 (236)
Q Consensus       100 ~~~~~~~w~I~nfs~l~~-----~--~~~S~~f~~--gg~~W~l~~yp~G~~~~~~~~lsiyL~~~~~~~~~-~~w~~~~  169 (236)
                      ...+.|+|+|+|||.++.     +  .++|++|.+  ||++|+|++||+|++.+.++|||+||++.+++..+ .+|+++|
T Consensus        40 ~~~g~~~w~I~nfS~~~~~~~~g~~~~i~S~~F~v~~gG~~W~i~~yP~G~~~~~~~~lSlyL~l~~~~~~~~~~W~~~a  119 (192)
T 1ca9_A           40 TYDGVFIWKISDFARKRQEAVAGRIPAIFSPAFYTSRYGYKMCLRIYLNGDGTGRGTHLSLFFVVMKGPNDALLRWPFNQ  119 (192)
T ss_dssp             CSSSEEEEEEESHHHHHHHHHTTSSCCEECCCEESSTTSCEEEEEEETTCCGGGTTTEEEEEEEEECCTTGGGSCSSCCC
T ss_pred             ccCceEEEEECCHHHHHHHhhcCCCceEECceEEeCCCCeEEEEEEEeCCCCCCCCCEEEEEEEEccCCCCCcCCCceEE
Confidence            678999999999999863     2  599999999  99999999999998766678999999998876544 6899999


Q ss_pred             EEEEEEEeCCCCcceeeec-----eeeec----CCCCCCchhccccccccccCCCCceECCEEEEEEEEEEEE
Q 026621          170 HFTLRIRDQVLSKHNEKKA-----STWLS----TSSEDWGWSTFVELSYFNKAENGFLMNDVCIVEAEVLRIS  233 (236)
Q Consensus       170 ~f~l~l~n~~~~~~~~~~~-----~~~F~----~~~~~~G~~~Fi~~~~L~~~~~gyl~~D~l~ie~~v~v~~  233 (236)
                      +|+|.|+||.++++.....     ...|.    ..+.+|||.+||++++|++ ..|||+||+|+|+|+|+|.+
T Consensus       120 ~~~l~lldq~~~~~~~~~~~~~~~~~~f~rp~~~~~~~wG~~~Fi~~~~L~~-~~gyl~dD~l~I~~~V~V~~  191 (192)
T 1ca9_A          120 KVTLMLLDQNNREHVIDAFRPDVTSSSFQRPVNDMNIASGCPLFCPVSKMEA-KNSYVRDDAIFIKAIVDLTG  191 (192)
T ss_dssp             CEEEEECCTTSSCCEEEEECCCTTSGGGSCCSSSBCCCEEEEEEEETHHHHS-SCSSCBTTEEEEEEEECCTT
T ss_pred             EEEEEEECCCCCceeeEeeccCCchhhhcCCccCCCCCcChhheeEHHHhhh-ccCCEeCCEEEEEEEEEecC
Confidence            9999999999876543321     12353    1246899999999999995 37999999999999998854

>1d00_A Tumor necrosis factor receptor associated protein 2; B-sandwich, protein-peptide complex, apoptosis; 2.00A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1ca4_A 1d0j_A 1f3v_B 1czy_A 1d01_A 1d0a_A

Probab=99.95  E-value=1.3e-28  Score=192.56  Aligned_cols=133  Identities=22%  Similarity=0.306  Sum_probs=109.5

Q ss_pred             cCCCCeEEEEEcccccccC-----c--eeecccEE--eCCeEEEEEEecCCCCCCCCceEEEEEEecCCCCCC-CCCeEE
Q 026621           99 SASNYKHVWKIENFSKLEA-----K--LYESEVFV--AGNQKWKIKLYPKGQGVGRGSHISVYLALADLSTIT-RDSKIY  168 (236)
Q Consensus        99 ~~~~~~~~w~I~nfs~l~~-----~--~~~S~~f~--~gg~~W~l~~yp~G~~~~~~~~lsiyL~~~~~~~~~-~~w~~~  168 (236)
                      ....+.|+|+|+|||.+++     +  .++|++|.  +||++|+|++||+|++.+.++|||+||+|.+++..+ .+|+++
T Consensus        15 ~~~~g~~~w~I~nfS~~~~~~~~g~~~~i~S~~F~~~~gG~~W~i~~yP~G~~~~~~~~lSlyL~l~~~~~~~~~~w~~~   94 (168)
T 1d00_A           15 STYDGVFIWKISDFARKRQEAVAGRIPAIFSPAFYTSRYGYKMCLRIYLNGDGTGRGTHLSLFFVVMKGPNDALLRWPFN   94 (168)
T ss_dssp             CCSSSEEEEEEESHHHHHHHHHTTSSCCEECCCEESSTTSCEEEEEEETTCCGGGTTTEEEEEEEEECCTTGGGSCSSCC
T ss_pred             cccCCEEEEEECCHHHHHHHhhcCCCeEEECCCeecCCCCEEEEEEEEeCCCCCCCCcEEEEEEEEecCCCCccCCCceE
Confidence            3578999999999999862     2  38999996  799999999999998765678999999998765543 689999


Q ss_pred             EEEEEEEEeCCCCcceeeec-----eeeecC----CCCCCchhccccccccccCCCCceECCEEEEEEEEEEE
Q 026621          169 VHFTLRIRDQVLSKHNEKKA-----STWLST----SSEDWGWSTFVELSYFNKAENGFLMNDVCIVEAEVLRI  232 (236)
Q Consensus       169 ~~f~l~l~n~~~~~~~~~~~-----~~~F~~----~~~~~G~~~Fi~~~~L~~~~~gyl~~D~l~ie~~v~v~  232 (236)
                      ++|+|+|+||.++++.....     .+.|..    .+.+|||.+||++++|+++ +|||+||+|+|+|+|+|.
T Consensus        95 ~~~~l~ll~q~~~~~~~~~~~~~~~~~~f~~p~~~~~~~~G~~~Fi~~~~L~~~-~gyl~dD~l~I~~~V~v~  166 (168)
T 1d00_A           95 QKVTLMLLDQNNREHVIDAFRPDVTSSSFQRPVNDMNIASGCPLFCPVSKMEAK-NSYVRDDAIFIKAIVDLT  166 (168)
T ss_dssp             CCEEEEECCTTSSCCEEEEECCCTTSGGGSCCSSSBCCCEEEEEEEETTTTTSS-SSSSBTTEEEEEEEECCT
T ss_pred             EEEEEEEECCCCCccceeccccCcchhhccCCCcCCCCCcCcceEeEHHHhccc-CCceeCCEEEEEEEEEec
Confidence            99999999999876553321     124542    3468999999999999974 499999999999999874

>4ghu_A TNF receptor-associated factor 3; alpha/beta, innate immunity, IFN pathway, immune system; 2.20A {Mus musculus} PDB: 2gkw_A 1kzz_A 1l0a_A 1zms_A 1rf3_A

Probab=99.94  E-value=3.4e-28  Score=194.66  Aligned_cols=133  Identities=20%  Similarity=0.285  Sum_probs=109.7

Q ss_pred             cCCCCeEEEEEcccccccC-------ceeecccEEeC--CeEEEEEEecCCCCCCCCceEEEEEEecCCCCC-CCCCeEE
Q 026621           99 SASNYKHVWKIENFSKLEA-------KLYESEVFVAG--NQKWKIKLYPKGQGVGRGSHISVYLALADLSTI-TRDSKIY  168 (236)
Q Consensus        99 ~~~~~~~~w~I~nfs~l~~-------~~~~S~~f~~g--g~~W~l~~yp~G~~~~~~~~lsiyL~~~~~~~~-~~~w~~~  168 (236)
                      ....+.|+|+|+|||.+++       +.++|++|.+|  |++|+|++||+|++.+.++||||||.+.+++.. ...|++.
T Consensus        36 ~~~~g~~~w~I~nfS~~~~~~~~~~g~~i~S~~F~vg~~Gy~W~i~~yPnG~~~~~~~~lSlyL~l~~g~~D~~l~wp~~  115 (198)
T 4ghu_A           36 ASYNGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLFFVIMRGEYDALLPWPFK  115 (198)
T ss_dssp             CCSSSEEEEEECCHHHHHHHHHTTSSCCEECCCEESSTTSCEEEEEEETTCCGGGTTTEEEEEEEEECCTTGGGSCSSCC
T ss_pred             cccccEEEEEECCHHHHHhhhccCCCcEEECCCeEECCCCcEEEEEEEeCCCCCCCCCeEEEEEEecCCccCCCCCceEE
Confidence            4678999999999998763       57999999999  999999999999887667899999999876543 3589999


Q ss_pred             EEEEEEEEeCCCCc-ceeeec---------eeeecCCCCCCchhccccccccccCCCCceECCEEEEEEEEEEEE
Q 026621          169 VHFTLRIRDQVLSK-HNEKKA---------STWLSTSSEDWGWSTFVELSYFNKAENGFLMNDVCIVEAEVLRIS  233 (236)
Q Consensus       169 ~~f~l~l~n~~~~~-~~~~~~---------~~~F~~~~~~~G~~~Fi~~~~L~~~~~gyl~~D~l~ie~~v~v~~  233 (236)
                      ++|+|.|+||.++. +.....         .+.|...+.+|||.+||++++|++  .|||+||+|+|+|+|+|+.
T Consensus       116 a~~~l~Lldq~~~~~~~~~~~~~~~~~~~f~rp~~~~~~~wG~~~Fi~~~~L~~--~gyL~dD~l~I~~~V~v~~  188 (198)
T 4ghu_A          116 QKVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPVFVAQTVLEN--GTYIKDDTIFIKVIVDTSD  188 (198)
T ss_dssp             CCEEEEECCCSTTCCCEEEEECCCTTSGGGSCCSSSBCCCEEEEEEEEHHHHHH--TTSCBTTBEEEEEEECCTT
T ss_pred             EEEEEEEEcCCCCccceEEEeecCcccceecCCcccCcCCcCchhEeEHHHhhh--cCCeeCCEEEEEEEEEecc
Confidence            99999999998653 332211         122333456899999999999996  7999999999999998864

>1lb6_A TNF receptor-associated factor 6; TRAF6-CD40 complex, signaling protein; 1.80A {Homo sapiens} SCOP: b.8.1.1 PDB: 1lb5_A 1lb4_A

Probab=99.94  E-value=1.7e-27  Score=184.71  Aligned_cols=133  Identities=21%  Similarity=0.228  Sum_probs=104.3

Q ss_pred             CCCCeEEEEEccccccc-----Cc--eeecccEEeC--CeEEEEEEecCCCCCC-CCceEEEEEEecCCCCC-CCCCeEE
Q 026621          100 ASNYKHVWKIENFSKLE-----AK--LYESEVFVAG--NQKWKIKLYPKGQGVG-RGSHISVYLALADLSTI-TRDSKIY  168 (236)
Q Consensus       100 ~~~~~~~w~I~nfs~l~-----~~--~~~S~~f~~g--g~~W~l~~yp~G~~~~-~~~~lsiyL~~~~~~~~-~~~w~~~  168 (236)
                      ...+.|+|+|+|||.++     ++  .+.|++|.+|  |++|+|++||+|+..+ .++|||+||++.+++.. ..+|+++
T Consensus         2 ~~~g~~~w~I~~fS~~~~~~~~g~~~~i~S~~F~vg~~Gy~w~i~~yP~G~~~~~~~~~lSlyL~l~~~~~d~~l~wp~~   81 (160)
T 1lb6_A            2 QCNGIYIWKIGNFGMHLKCQEEEKPVVIHSPGFYTGKPGYKLCMRLHLQLPTAQRCANYISLFVHTMQGEYDSHLPWPFQ   81 (160)
T ss_dssp             CCCEEEEEEECCHHHHHHHHHTTCCEEEECCCEESSSSCCEEEEEEEECCTTCTTTTTEEEEEEEEECCTTGGGSCSSCC
T ss_pred             ccCcEEEEEECCHHHHHHhhhcCCCeEEECcCeecCCCCeeEEEEEEecCCCCCCCCCEEEEEEEEeecCCCccCCCcee
Confidence            45688999999999985     33  7999999999  9999999999997654 36899999999876543 3569999


Q ss_pred             EEEEEEEEeCCCCc---ceeeec-----eeeecC-----CCCCCchhccccccccccCCCCceECCEEEEEEEEEEEEe
Q 026621          169 VHFTLRIRDQVLSK---HNEKKA-----STWLST-----SSEDWGWSTFVELSYFNKAENGFLMNDVCIVEAEVLRISK  234 (236)
Q Consensus       169 ~~f~l~l~n~~~~~---~~~~~~-----~~~F~~-----~~~~~G~~~Fi~~~~L~~~~~gyl~~D~l~ie~~v~v~~~  234 (236)
                      |+|+|.|+||.++.   +.....     ...|..     ...+|||.+||++++|+.  .|||+||+|+|+|+|+|+..
T Consensus        82 a~~~l~lldq~~~~~~~~~~~~~~~~~~~~~f~~p~~~~~~~~~G~~~Fi~~~~L~~--~~yl~dD~l~I~~~V~v~~~  158 (160)
T 1lb6_A           82 GTIRLTILDQSEAPVRQNHEEIMDAKPELLAFQRPTIPRNPKGFGYVTFMHLEALRQ--RTFIKDDTLLVRCEVSTRFD  158 (160)
T ss_dssp             SEEEEEECCCSCTTSCCCEEEEEECCTTSGGGSCCSSSBCSEEEEEEEEEEGGGGGT--SCCCBTTBEEEEEEEEC---
T ss_pred             eeEEEEEEcCCCccccccceEEeecCCcchhccCCcccCCCCCcCEeeEeEHHHhhh--CCCccCCEEEEEEEEEEeec
Confidence            99999999998652   211111     112432     123799999999999995  79999999999999999864

>2gkw_A TNF receptor-associated factor 3; CD40, NF-KB signaling, BAFF receptor, TRAF3, apoptosis; 2.70A {Homo sapiens} PDB: 1kzz_A 1l0a_A 1zms_A 1rf3_A

Probab=99.94  E-value=9.2e-28  Score=191.53  Aligned_cols=132  Identities=21%  Similarity=0.325  Sum_probs=109.3

Q ss_pred             CCCCeEEEEEccccccc-----Cc--eeecccEEeC--CeEEEEEEecCCCCCCCCceEEEEEEecCCCCC-CCCCeEEE
Q 026621          100 ASNYKHVWKIENFSKLE-----AK--LYESEVFVAG--NQKWKIKLYPKGQGVGRGSHISVYLALADLSTI-TRDSKIYV  169 (236)
Q Consensus       100 ~~~~~~~w~I~nfs~l~-----~~--~~~S~~f~~g--g~~W~l~~yp~G~~~~~~~~lsiyL~~~~~~~~-~~~w~~~~  169 (236)
                      ...++|+|+|+|||.++     ++  .++|++|.+|  |++|+|++||+|++.+.++|+|+||++.+++.. ...|++++
T Consensus        37 ~~~g~~~w~I~~fS~~~~~~~~g~~~~i~S~~F~vg~~Gykw~i~~yPnG~~~~~~~~lSlyL~l~~~~~d~~l~wp~~a  116 (192)
T 2gkw_A           37 SYNGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLFFVIMRGEYDALLPWPFKQ  116 (192)
T ss_dssp             CCSSEEEEEEECHHHHHHHHHHTSCSCEECCCEESSTTSCEEEEEEETTCCGGGTTTEEEEEEEEECCTTGGGSCSSCCC
T ss_pred             ccCcEEEEEECCHHHHHHHhhcCCCceEEcccEEECCCCcEEEEEEEeCCCCCCCCCEEEEEEEEecCCCCccCCCcEEE
Confidence            47899999999999986     33  5999999999  999999999999876667899999999876543 35799999


Q ss_pred             EEEEEEEeCCCCc-ceeeec-----eeeecCC----CCCCchhccccccccccCCCCceECCEEEEEEEEEEEE
Q 026621          170 HFTLRIRDQVLSK-HNEKKA-----STWLSTS----SEDWGWSTFVELSYFNKAENGFLMNDVCIVEAEVLRIS  233 (236)
Q Consensus       170 ~f~l~l~n~~~~~-~~~~~~-----~~~F~~~----~~~~G~~~Fi~~~~L~~~~~gyl~~D~l~ie~~v~v~~  233 (236)
                      +|+|+|+||.+.. ++.+..     .+.|...    +.+|||.+||++++|++  .|||+||+++|+|+|.|.+
T Consensus       117 ~~~l~lldq~~~~~~~~~~~~~~~~~~~F~~~~~~~~~~wG~~~Fi~~~~L~~--~gyl~dD~l~I~~~V~v~~  188 (192)
T 2gkw_A          117 KVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPVFVAQTVLEN--GTYIKDDTIFIKVIVDTSD  188 (192)
T ss_dssp             CEEEEECCCSTTCCCEEEEECCCTTCTTSSCCSSSBCCCEEEEEEEEHHHHHH--TTSCBTTEEEEEEEECCTT
T ss_pred             EEEEEEECCCCCccceEEEEecCCCcccccCCCCCCcCCCChHHEeEHHHhCc--CCCeeCCEEEEEEEEEcCC
Confidence            9999999999863 443221     1457532    36899999999999997  5999999999999997754

>1flk_A TNF receptor associated factor 3; TNF signaling, TRAF3, CD40-binding protein, apoptosis; 2.80A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1fll_A

Probab=99.93  E-value=4.3e-27  Score=192.36  Aligned_cols=134  Identities=20%  Similarity=0.303  Sum_probs=110.5

Q ss_pred             cCCCCeEEEEEcccccccC-------ceeecccEEeC--CeEEEEEEecCCCCCCCCceEEEEEEecCCCCC-CCCCeEE
Q 026621           99 SASNYKHVWKIENFSKLEA-------KLYESEVFVAG--NQKWKIKLYPKGQGVGRGSHISVYLALADLSTI-TRDSKIY  168 (236)
Q Consensus        99 ~~~~~~~~w~I~nfs~l~~-------~~~~S~~f~~g--g~~W~l~~yp~G~~~~~~~~lsiyL~~~~~~~~-~~~w~~~  168 (236)
                      ....+.|+|+|.|||.++.       ..++|++|.+|  |++|+|++||+|++.+.++|+|+||++.+++.. ...|++.
T Consensus        72 ~~~~g~~~wkI~nfS~~~~~~~~g~~~~i~S~~F~vg~~Gy~w~i~~yPnG~~~~~~~~lSlyL~l~~~~~d~~l~Wp~~  151 (228)
T 1flk_A           72 ASYNGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLFFVIMRGEYDALLPWPFK  151 (228)
T ss_dssp             CCSSSEEEEEEECHHHHHHHHHTTSCCCEECCCEESSTTSCEECEEEETTCCGGGTTTEEEEEECCBCCTTTTSSCSSCC
T ss_pred             cCcCcEEEEEECCHHHHHHHhhcCCCeeEECceEEeCCCCcEEEEEEEcCCCCCCCCCEEEEEEEEecCCccccCCCcEE
Confidence            3578999999999999862       27999999999  999999999999877667899999999876543 3579999


Q ss_pred             EEEEEEEEeCCCCc-ceeee-----ceeeecC----CCCCCchhccccccccccCCCCceECCEEEEEEEEEEEEe
Q 026621          169 VHFTLRIRDQVLSK-HNEKK-----ASTWLST----SSEDWGWSTFVELSYFNKAENGFLMNDVCIVEAEVLRISK  234 (236)
Q Consensus       169 ~~f~l~l~n~~~~~-~~~~~-----~~~~F~~----~~~~~G~~~Fi~~~~L~~~~~gyl~~D~l~ie~~v~v~~~  234 (236)
                      ++|+|+|+||.+.+ ++.+.     ..+.|..    .+.+|||++||++++|++  .|||+||+|+|+|+|.|.+.
T Consensus       152 a~~~l~lldq~~~~~~~~~~~~~~~~~~~F~rp~~~~~~~wG~~~Fi~~~~L~~--~gyL~dD~l~I~~~V~v~~~  225 (228)
T 1flk_A          152 QKVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPVFVAQTVLEN--GTYIKDDTIFIKVIVDTSDL  225 (228)
T ss_dssp             CCEEEEECCCSSSCCCEEEEECCCTTCTTSSSCSSSBCCCCSEEEEEEHHHHSS--STTCCSSEEEEEEECCCTTS
T ss_pred             EEEEEEEEcCCCCccceeeeecCCCccccccCCccCCCCCcCHHHeeEHHHHcc--CCCccCCEEEEEEEEEcccc
Confidence            99999999999764 33221     1234642    246899999999999997  79999999999999988654

>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A

Probab=99.93  E-value=2.6e-26  Score=196.04  Aligned_cols=130  Identities=23%  Similarity=0.471  Sum_probs=108.3

Q ss_pred             CCCCeEEEEEccccccc---CceeecccEEeCCe---EEEEEEecCCCCCCCCceEEEEEEecCCCCCCCCCeEEEEEEE
Q 026621          100 ASNYKHVWKIENFSKLE---AKLYESEVFVAGNQ---KWKIKLYPKGQGVGRGSHISVYLALADLSTITRDSKIYVHFTL  173 (236)
Q Consensus       100 ~~~~~~~w~I~nfs~l~---~~~~~S~~f~~gg~---~W~l~~yp~G~~~~~~~~lsiyL~~~~~~~~~~~w~~~~~f~l  173 (236)
                      ..+++|+|+|+|||.++   ++.+.|++|.+||+   +|+|++||+|+..+.++|+|+||+|.+.    ..|++.|+|+|
T Consensus         4 ~~~~~~~w~I~nfs~~~~~~~~~i~S~~F~~gg~~~~~W~i~~yP~G~~~~~~~~lslyL~~~~~----~~~~v~a~~~~   79 (312)
T 3hqi_A            4 VVKFSYMWTINNFSFCREEMGEVIKSSTFSSGANDKLKWCLRVNPKGLDEESKDYLSLYLLLVSC----PKSEVRAKFKF   79 (312)
T ss_dssp             EEEEEEEEEETTGGGCCCCTTCCEECCCBCC--CCCCEEEEEEETTCCC--CTTEEEEEEEEEEC----CC-CEEEEEEE
T ss_pred             eEEEEEEEEEcCcchhhhcCCCeEeeCCcccCCCCCceEEEEEECCCCCccCCCcEEEEEEEcCC----CCCcEEEEEEE
Confidence            44678999999999996   67899999999985   9999999999876667899999999864    36899999999


Q ss_pred             EEEeCCCCccee--eeceeeecCCCCCCchhccccccccccCCCCceECCEEEEEEEEEEEEe
Q 026621          174 RIRDQVLSKHNE--KKASTWLSTSSEDWGWSTFVELSYFNKAENGFLMNDVCIVEAEVLRISK  234 (236)
Q Consensus       174 ~l~n~~~~~~~~--~~~~~~F~~~~~~~G~~~Fi~~~~L~~~~~gyl~~D~l~ie~~v~v~~~  234 (236)
                      +|+||.++....  ....++|+. +.+|||.+||+|++|+++.+|||+||+++|+|+|+|++.
T Consensus        80 ~l~~~~~~~~~~~~~~~~~~F~~-~~~wG~~~Fi~~~~L~~~~~~yl~dD~l~i~~~v~v~~~  141 (312)
T 3hqi_A           80 SILNAKGEETKAMESQRAYRFVQ-GKDWGFKKFIRRGFLLDEANGLLPDDKLTLFCEVSVVQD  141 (312)
T ss_dssp             EEECTTSCEEEEEECSSCEEECT-TCEEEEEEEEEHHHHTCGGGCCCGGGCEEEEEEEEEEEE
T ss_pred             EEEeCCCCcccccccCCceeCCC-CCCcCHHHhccHHHhhccccCeecCCEEEEEEEEEEEec
Confidence            999999875432  235678874 468999999999999987789999999999999999964

>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens}

Probab=99.93  E-value=6e-26  Score=206.51  Aligned_cols=133  Identities=20%  Similarity=0.268  Sum_probs=111.8

Q ss_pred             CCCCeEEEEEcccccccCceeecccEEeCCeEEEEEEecCCCCCC-CCceEEEEEEecCCCCCCCCCeEEEEEEEEEEeC
Q 026621          100 ASNYKHVWKIENFSKLEAKLYESEVFVAGNQKWKIKLYPKGQGVG-RGSHISVYLALADLSTITRDSKIYVHFTLRIRDQ  178 (236)
Q Consensus       100 ~~~~~~~w~I~nfs~l~~~~~~S~~f~~gg~~W~l~~yp~G~~~~-~~~~lsiyL~~~~~~~~~~~w~~~~~f~l~l~n~  178 (236)
                      ...++|+|+|+|||.+++ .++|++|.+||++|+|.+||+|+..+ .++||||||.|.+. ..+.+|+++|+|+|.|+|+
T Consensus        28 ~~~~~~~w~I~nfS~~~~-~~~S~~F~vgg~~W~i~~yP~G~~~~~~~~~lSlyL~~~~~-~~~~~w~v~a~f~l~l~n~  105 (522)
T 2f1z_A           28 RSEATFQFTVERFSRLSE-SVLSPPCFVRNLPWKIMVMPRFYPDRPHQKSVGFFLQCNAE-SDSTSWSCHAQAVLKIINY  105 (522)
T ss_dssp             CSEEEEEEEESSCTTCCS-CEECCCEEETTEEEEEEECBC--------CBBCEEEEESTT-CCCSSCBEEEEEEEEECCT
T ss_pred             cCCcEEEEEECChhhcCC-ceeCCCEEECCEeeEEEEEeCCCCCCCCCCeEEEEEEecCC-CCCCCceEEEEEEEEEEcC
Confidence            456789999999999986 79999999999999999999997543 46899999999876 4567899999999999999


Q ss_pred             CCCc-ceeeeceeeecCCCCCCchhccccccccccCCCCceECCEEEEEEEEEEEEe
Q 026621          179 VLSK-HNEKKASTWLSTSSEDWGWSTFVELSYFNKAENGFLMNDVCIVEAEVLRISK  234 (236)
Q Consensus       179 ~~~~-~~~~~~~~~F~~~~~~~G~~~Fi~~~~L~~~~~gyl~~D~l~ie~~v~v~~~  234 (236)
                      .++. +..+...++|.....+|||.+||++++|.++.+|||+||+++|+|+|+|...
T Consensus       106 ~~~~~~~~~~~~~~F~~~~~~wG~~~Fi~~~~L~~~~~g~L~nD~l~i~~~V~v~~p  162 (522)
T 2f1z_A          106 RDDEKSFSRRISHLFFHKENDWGFSNFMAWSEVTDPEKGFIDDDKVTFEVFVQADAP  162 (522)
T ss_dssp             TCGGGCEEEECCEEECGGGCEEEESSSSBHHHHSCGGGSSCBTTBEEEEEEEEECCC
T ss_pred             CCCccceeccceeEecCCCCCcchhheeEhhHhcCcccCcccCCcEEEEEEeecccc
Confidence            8764 4556677889766788999999999999887889999999999999998643

>2foj_A Ubiquitin carboxyl-terminal hydrolase 7; MATH domain, hydrolase; 1.60A {Homo sapiens} PDB: 1yze_A 1yy6_A 2foo_A 2fop_A 3mqr_A 3mqs_C 2f1w_A 2f1x_A 2f1y_A 2xxn_A

Probab=99.56  E-value=4.8e-15  Score=113.73  Aligned_cols=75  Identities=21%  Similarity=0.379  Sum_probs=66.0

Q ss_pred             CCCCCCcEEEEEEEEEEEeCCCCceEEEecccceeeEeecCcccccccccccccccccCCCCeEeCCEEEEEEEEEEe
Q 026621            5 SSLGLGWEVYVIFRLFVLDQNKDEFLILQDAMGKERRFHVLKLEWGFDQFIPLEEFNDASNGYLVGDTCVFGAEVLVK   82 (236)
Q Consensus         5 ~~~~~~w~~~a~f~~~l~n~~~~~~~~~~~~~~~~~~F~~~~~~wG~~~fi~~~~l~~~~~gyl~~d~~~i~~~v~i~   82 (236)
                      +..+.+|+++|+|+|.|+||.+++.+..+.   ..|+|.....+|||++||++++|+++++|||+||+++|+|+|.|.
T Consensus        74 ~~~~~~w~v~a~~~l~l~~~~~~~~~~~~~---~~~~F~~~~~~wG~~~Fi~~~~L~~~~~~yl~dD~l~Ie~~V~V~  148 (155)
T 2foj_A           74 ESDSTSWSCHAQAVLKIINYRDDEKSFSRR---ISHLFFHKENDWGFSNFMAWSEVTDPEKGFIDDDKVTFEVFVQAD  148 (155)
T ss_dssp             TCCCSSCEEEEEEEEEECCSSCGGGCEEEE---EEEEEETTBCEEEEEEEEEHHHHTCTTTSSCBTTBEEEEEEEEEC
T ss_pred             CCCCCCCEEEEEEEEEEEcCCCCcceEEec---cEEEeCCCCCCEeECCeEEHHHhcCcCCCceECCEEEEEEEEEEe
Confidence            345778999999999999998776555555   789998878899999999999999999999999999999999963

>3ivv_A Speckle-type POZ protein; protein binding, nucleus, UBL conjugation pathway, ligase; 1.25A {Homo sapiens} SCOP: b.8.1.1 PDB: 3ivq_A 3ivb_A 3hsv_A 3hqh_A 3hqm_A 3hql_A 2cr2_A

Probab=99.46  E-value=4.2e-14  Score=107.27  Aligned_cols=70  Identities=29%  Similarity=0.438  Sum_probs=60.7

Q ss_pred             CCcEEEEEEEEEEEeCCCCceEEEecccceeeEeecCcccccccccccccccccCCCCeEeCCEEEEEEEEEE
Q 026621            9 LGWEVYVIFRLFVLDQNKDEFLILQDAMGKERRFHVLKLEWGFDQFIPLEEFNDASNGYLVGDTCVFGAEVLV   81 (236)
Q Consensus         9 ~~w~~~a~f~~~l~n~~~~~~~~~~~~~~~~~~F~~~~~~wG~~~fi~~~~l~~~~~gyl~~d~~~i~~~v~i   81 (236)
                      ++|+++|+|+|+|+||.+++.......  ..++|.. ..+|||++||++++|+++++|||+||+++|+|+|.|
T Consensus        73 ~~w~v~a~f~l~llnq~~~~~~~~~~~--~~~~F~~-~~~wG~~~Fi~~~~L~~~~~~yl~dD~l~I~~~V~V  142 (145)
T 3ivv_A           73 PKSEVRAKFKFSILNAKGEETKAMESQ--RAYRFVQ-GKDWGFKKFIRRDFLLDEANGLLPDDKLTLFCEVSV  142 (145)
T ss_dssp             SSSEEEEEEEEEEECTTSCEEEEEECS--SCEEEET-TCEEEEEEEEEHHHHHCGGGCSSGGGCEEEEEEEEE
T ss_pred             CCCcEEEEEEEEEEecCCCceeeeccc--ceEEecC-CCCcCHHHeEEhhhhccccCCcEeCCEEEEEEEEEE
Confidence            579999999999999997776644332  5789974 589999999999999988899999999999999983

>4gwm_A Meprin A subunit beta; mulidomain structure, hydrolase; HET: NAG BMA FUC MAN; 1.85A {Homo sapiens} PDB: 4gwn_A*

Probab=99.42  E-value=6.3e-13  Score=121.13  Aligned_cols=127  Identities=18%  Similarity=0.241  Sum_probs=99.7

Q ss_pred             cCCCCeEEEEEccccccc---CceeecccEE-eCCeEEEEEEecCCCCCCCCceEEEEEEecCCCCC-CCCCeEE-EEEE
Q 026621           99 SASNYKHVWKIENFSKLE---AKLYESEVFV-AGNQKWKIKLYPKGQGVGRGSHISVYLALADLSTI-TRDSKIY-VHFT  172 (236)
Q Consensus        99 ~~~~~~~~w~I~nfs~l~---~~~~~S~~f~-~gg~~W~l~~yp~G~~~~~~~~lsiyL~~~~~~~~-~~~w~~~-~~f~  172 (236)
                      +..+..+.|+|.||+++-   +..++||+|. ..||.++|.+||++     ..++|||++|..++++ ...|++. -+++
T Consensus       402 ~G~CP~~vw~i~nfs~~l~~~~~~~~Sp~Fys~~GY~~~v~l~~~~-----~~~~~~~~~l~sG~~D~~L~WP~~~~q~t  476 (592)
T 4gwm_A          402 ETRCPHHIWHIRNFTQFIGSPNGTLYSPPFYSSKGYAFQIYLNLAH-----VTNAGIYFHLISGANDDQLQWPCPWQQAT  476 (592)
T ss_dssp             SSCCCSEEEEECSCGGGTTCTTCEEECCCEECTTSCEEEEEEECCS-----SSEEEEEEEEECCTTGGGSCSSCCSEEEE
T ss_pred             eCCCCCCceeecCHHHhhcCCCCceeCCCccCCCCeEEEEEEecCC-----CceEEEEEEEecCCCCCCccCCCCCCEEE
Confidence            688999999999999974   5679999997 46999999999976     4699999999988753 5689995 7899


Q ss_pred             EEEEeCCCCc----ceeeece-----------------------eeecC-----CCCCCchhccccccccccCCCCceEC
Q 026621          173 LRIRDQVLSK----HNEKKAS-----------------------TWLST-----SSEDWGWSTFVELSYFNKAENGFLMN  220 (236)
Q Consensus       173 l~l~n~~~~~----~~~~~~~-----------------------~~F~~-----~~~~~G~~~Fi~~~~L~~~~~gyl~~  220 (236)
                      +.|++|+...    +.++...                       ..|..     ++.+|||+.||+++.|+.  ..||+|
T Consensus       477 ~~llDQ~pd~~~rms~~~s~ttdp~~~~~~~~~~w~~P~~~g~~~~~~~~~~~~r~~~~G~~~fish~~l~~--r~fiK~  554 (592)
T 4gwm_A          477 MTLLDQNPDIRQRMSNQRSITTDPFMTTDNGNYFWDRPSKVGTVALFSNGTQFRRGGGYGTSAFITHERLKS--RDFIKG  554 (592)
T ss_dssp             EEECCCCSSGGGCCCEEEEEECCTTCBCTTSCBTTSCHHHHCEEEECTTCCEEEEEEEEEEEEEEEHHHHTS--TTSSBT
T ss_pred             EEEeCCCCChHhcCceeEEEEcCCcccCcccccccCCcccccccccccCCcceeecCCcCccccccHHHHhh--cCcccC
Confidence            9999997542    1111100                       01211     124689999999999997  579999


Q ss_pred             CEEEEEEEEEEE
Q 026621          221 DVCIVEAEVLRI  232 (236)
Q Consensus       221 D~l~ie~~v~v~  232 (236)
                      |+|+|.+.|+-+
T Consensus       555 d~~~i~~~~eD~  566 (592)
T 4gwm_A          555 DDVYILLTVEDI  566 (592)
T ss_dssp             TBEEEEEEEEEC
T ss_pred             CeEEEEEEEEeC
Confidence            999999999755

>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens}

Probab=99.22  E-value=8.3e-12  Score=113.35  Aligned_cols=74  Identities=22%  Similarity=0.383  Sum_probs=66.6

Q ss_pred             CCCCCcEEEEEEEEEEEeCCCCceEEEecccceeeEeecCcccccccccccccccccCCCCeEeCCEEEEEEEEEEe
Q 026621            6 SLGLGWEVYVIFRLFVLDQNKDEFLILQDAMGKERRFHVLKLEWGFDQFIPLEEFNDASNGYLVGDTCVFGAEVLVK   82 (236)
Q Consensus         6 ~~~~~w~~~a~f~~~l~n~~~~~~~~~~~~~~~~~~F~~~~~~wG~~~fi~~~~l~~~~~gyl~~d~~~i~~~v~i~   82 (236)
                      ..+.+|+++|+|+|.|+|+++++.+..+.   ..|+|.....+|||.+||++++|.++++|||+||+++|+|+|.+.
T Consensus        87 ~~~~~w~v~a~f~l~l~n~~~~~~~~~~~---~~~~F~~~~~~wG~~~Fi~~~~L~~~~~g~L~nD~l~i~~~V~v~  160 (522)
T 2f1z_A           87 SDSTSWSCHAQAVLKIINYRDDEKSFSRR---ISHLFFHKENDWGFSNFMAWSEVTDPEKGFIDDDKVTFEVFVQAD  160 (522)
T ss_dssp             CCCSSCBEEEEEEEEECCTTCGGGCEEEE---CCEEECGGGCEEEESSSSBHHHHSCGGGSSCBTTBEEEEEEEEEC
T ss_pred             CCCCCceEEEEEEEEEEcCCCCccceecc---ceeEecCCCCCcchhheeEhhHhcCcccCcccCCcEEEEEEeecc
Confidence            56789999999999999999887766555   689998888899999999999999989999999999999999954

>4gjh_A TNF receptor-associated factor 5; TRAF domain, immune system; 2.81A {Mus musculus}

Probab=99.17  E-value=4.3e-12  Score=99.46  Aligned_cols=74  Identities=22%  Similarity=0.352  Sum_probs=58.8

Q ss_pred             CCCcEEEEEEEEEEEeCCCCceEEEec--ccceeeEeec----CcccccccccccccccccCCCCeEeCCEEEEEEEEEE
Q 026621            8 GLGWEVYVIFRLFVLDQNKDEFLILQD--AMGKERRFHV----LKLEWGFDQFIPLEEFNDASNGYLVGDTCVFGAEVLV   81 (236)
Q Consensus         8 ~~~w~~~a~f~~~l~n~~~~~~~~~~~--~~~~~~~F~~----~~~~wG~~~fi~~~~l~~~~~gyl~~d~~~i~~~v~i   81 (236)
                      +.+|.++|+|+|+|+||.++..+....  .....+.|+.    ...+|||.+||++++|.+|.+|||+||+++|+|+|.|
T Consensus        93 ~l~W~v~a~~~l~Lldq~~~~~~~~~~~~~~~~~~~F~~p~~~~~~~wG~~~Fi~~~~L~~~~~~yL~dD~l~I~~~V~i  172 (178)
T 4gjh_A           93 LLQWPFRQRVTLMLLDQSGKKNHIVETFKADPNSSSFKRPDGEMNIASGCPRFVSHSTLENSKNTYIKDDTLFLKVAVDL  172 (178)
T ss_dssp             GSCSSCCCEEEEEECCTTSSCCCEEEEEECCTTCGGGSCCSSSBCCCEEEEEEEEHHHHHCTTCCSSBTTBEEEEEEECC
T ss_pred             ccCCceEEEEEEEEEcCCCCcceeEEeeccCCccccccCCcccccCCcChhheeEHHHhhccccCcCcCCEEEEEEEEEe
Confidence            358999999999999998766544321  0002467863    4578999999999999998899999999999999974

>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A

Probab=99.06  E-value=1.4e-10  Score=98.46  Aligned_cols=70  Identities=29%  Similarity=0.405  Sum_probs=59.5

Q ss_pred             CCcEEEEEEEEEEEeCCCCceEEEecccceeeEeecCcccccccccccccccccCCCCeEeCCEEEEEEEEEE
Q 026621            9 LGWEVYVIFRLFVLDQNKDEFLILQDAMGKERRFHVLKLEWGFDQFIPLEEFNDASNGYLVGDTCVFGAEVLV   81 (236)
Q Consensus         9 ~~w~~~a~f~~~l~n~~~~~~~~~~~~~~~~~~F~~~~~~wG~~~fi~~~~l~~~~~gyl~~d~~~i~~~v~i   81 (236)
                      .+|.+.|+|+|.|+||++++....+..  ..++|... .+|||++||+|++|.++.+|||+||+++|+++|.|
T Consensus        69 ~~~~v~a~~~~~l~~~~~~~~~~~~~~--~~~~F~~~-~~wG~~~Fi~~~~L~~~~~~yl~dD~l~i~~~v~v  138 (312)
T 3hqi_A           69 PKSEVRAKFKFSILNAKGEETKAMESQ--RAYRFVQG-KDWGFKKFIRRGFLLDEANGLLPDDKLTLFCEVSV  138 (312)
T ss_dssp             CC-CEEEEEEEEEECTTSCEEEEEECS--SCEEECTT-CEEEEEEEEEHHHHTCGGGCCCGGGCEEEEEEEEE
T ss_pred             CCCcEEEEEEEEEEeCCCCcccccccC--CceeCCCC-CCcCHHHhccHHHhhccccCeecCCEEEEEEEEEE
Confidence            589999999999999987776554422  57899855 68999999999999988899999999999999993

>1d00_A Tumor necrosis factor receptor associated protein 2; B-sandwich, protein-peptide complex, apoptosis; 2.00A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1ca4_A 1d0j_A 1f3v_B 1czy_A 1d01_A 1d0a_A

Probab=98.98  E-value=1.1e-10  Score=90.46  Aligned_cols=72  Identities=25%  Similarity=0.361  Sum_probs=54.0

Q ss_pred             CCcEEEEEEEEEEEeCCCCceEEEec-ccceeeEeec----CcccccccccccccccccCCCCeEeCCEEEEEEEEEE
Q 026621            9 LGWEVYVIFRLFVLDQNKDEFLILQD-AMGKERRFHV----LKLEWGFDQFIPLEEFNDASNGYLVGDTCVFGAEVLV   81 (236)
Q Consensus         9 ~~w~~~a~f~~~l~n~~~~~~~~~~~-~~~~~~~F~~----~~~~wG~~~fi~~~~l~~~~~gyl~~d~~~i~~~v~i   81 (236)
                      .+|+++|+|+|.|+||.+.+.....- .....+.|..    ...+|||.+||++++|.++ +|||+||+++|+|+|.|
T Consensus        89 ~~w~~~~~~~l~ll~q~~~~~~~~~~~~~~~~~~f~~p~~~~~~~~G~~~Fi~~~~L~~~-~gyl~dD~l~I~~~V~v  165 (168)
T 1d00_A           89 LRWPFNQKVTLMLLDQNNREHVIDAFRPDVTSSSFQRPVNDMNIASGCPLFCPVSKMEAK-NSYVRDDAIFIKAIVDL  165 (168)
T ss_dssp             SCSSCCCCEEEEECCTTSSCCEEEEECCCTTSGGGSCCSSSBCCCEEEEEEEETTTTTSS-SSSSBTTEEEEEEEECC
T ss_pred             CCCceEEEEEEEEECCCCCccceeccccCcchhhccCCCcCCCCCcCcceEeEHHHhccc-CCceeCCEEEEEEEEEe
Confidence            68999999999999998765332110 0000235652    3578999999999999864 49999999999999974

>1ca9_A TRAF2, protein (TNF receptor associated factor 2); TNF signaling, TRAF, adapter protein, cell surviVal; 2.30A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1qsc_A 1czz_A

Probab=98.93  E-value=1.7e-10  Score=91.34  Aligned_cols=72  Identities=25%  Similarity=0.359  Sum_probs=54.1

Q ss_pred             CCcEEEEEEEEEEEeCCCCceEEEec-ccceeeEee----cCcccccccccccccccccCCCCeEeCCEEEEEEEEEE
Q 026621            9 LGWEVYVIFRLFVLDQNKDEFLILQD-AMGKERRFH----VLKLEWGFDQFIPLEEFNDASNGYLVGDTCVFGAEVLV   81 (236)
Q Consensus         9 ~~w~~~a~f~~~l~n~~~~~~~~~~~-~~~~~~~F~----~~~~~wG~~~fi~~~~l~~~~~gyl~~d~~~i~~~v~i   81 (236)
                      .+|+++|+|+|.|+||.+++.....- .....+.|.    ....+|||.+||++++|.+ .+|||+||+++|+|+|.|
T Consensus       113 ~~W~~~a~~~l~lldq~~~~~~~~~~~~~~~~~~f~rp~~~~~~~wG~~~Fi~~~~L~~-~~gyl~dD~l~I~~~V~V  189 (192)
T 1ca9_A          113 LRWPFNQKVTLMLLDQNNREHVIDAFRPDVTSSSFQRPVNDMNIASGCPLFCPVSKMEA-KNSYVRDDAIFIKAIVDL  189 (192)
T ss_dssp             SCSSCCCCEEEEECCTTSSCCEEEEECCCTTSGGGSCCSSSBCCCEEEEEEEETHHHHS-SCSSCBTTEEEEEEEECC
T ss_pred             CCCceEEEEEEEEECCCCCceeeEeeccCCchhhhcCCccCCCCCcChhheeEHHHhhh-ccCCEeCCEEEEEEEEEe
Confidence            68999999999999998774332110 000112454    2356899999999999986 579999999999999974

>1lb6_A TNF receptor-associated factor 6; TRAF6-CD40 complex, signaling protein; 1.80A {Homo sapiens} SCOP: b.8.1.1 PDB: 1lb5_A 1lb4_A

Probab=98.85  E-value=9e-10  Score=84.60  Aligned_cols=71  Identities=24%  Similarity=0.309  Sum_probs=50.8

Q ss_pred             CCCcEEEEEEEEEEEeCCCCce--EEEec--ccceeeEeec-----CcccccccccccccccccCCCCeEeCCEEEEEEE
Q 026621            8 GLGWEVYVIFRLFVLDQNKDEF--LILQD--AMGKERRFHV-----LKLEWGFDQFIPLEEFNDASNGYLVGDTCVFGAE   78 (236)
Q Consensus         8 ~~~w~~~a~f~~~l~n~~~~~~--~~~~~--~~~~~~~F~~-----~~~~wG~~~fi~~~~l~~~~~gyl~~d~~~i~~~   78 (236)
                      +.+|.+.|+|+|+|+||.+...  +....  .....+.|..     ...+|||.+||++++|.  ++|||.||+++|+|+
T Consensus        75 ~l~wp~~a~~~l~lldq~~~~~~~~~~~~~~~~~~~~~f~~p~~~~~~~~~G~~~Fi~~~~L~--~~~yl~dD~l~I~~~  152 (160)
T 1lb6_A           75 HLPWPFQGTIRLTILDQSEAPVRQNHEEIMDAKPELLAFQRPTIPRNPKGFGYVTFMHLEALR--QRTFIKDDTLLVRCE  152 (160)
T ss_dssp             GSCSSCCSEEEEEECCCSCTTSCCCEEEEEECCTTSGGGSCCSSSBCSEEEEEEEEEEGGGGG--TSCCCBTTBEEEEEE
T ss_pred             cCCCceeeeEEEEEEcCCCccccccceEEeecCCcchhccCCcccCCCCCcCEeeEeEHHHhh--hCCCccCCEEEEEEE
Confidence            3579999999999999976521  11100  0001123432     12479999999999998  479999999999999


Q ss_pred             EE
Q 026621           79 VL   80 (236)
Q Consensus        79 v~   80 (236)
                      |.
T Consensus       153 V~  154 (160)
T 1lb6_A          153 VS  154 (160)
T ss_dssp             EE
T ss_pred             EE
Confidence            98

>2gkw_A TNF receptor-associated factor 3; CD40, NF-KB signaling, BAFF receptor, TRAF3, apoptosis; 2.70A {Homo sapiens} PDB: 1kzz_A 1l0a_A 1zms_A 1rf3_A

Probab=98.84  E-value=5.1e-10  Score=88.67  Aligned_cols=72  Identities=17%  Similarity=0.214  Sum_probs=55.4

Q ss_pred             CCCcEEEEEEEEEEEeCCCCceEEEec--ccceeeEeecC----cccccccccccccccccCCCCeEeCCEEEEEEEEEE
Q 026621            8 GLGWEVYVIFRLFVLDQNKDEFLILQD--AMGKERRFHVL----KLEWGFDQFIPLEEFNDASNGYLVGDTCVFGAEVLV   81 (236)
Q Consensus         8 ~~~w~~~a~f~~~l~n~~~~~~~~~~~--~~~~~~~F~~~----~~~wG~~~fi~~~~l~~~~~gyl~~d~~~i~~~v~i   81 (236)
                      ..+|.+.|+|+|.|+||.++..+....  .....+.|...    ..+|||.+||++++|.+  +|||.||+++|+|+|.+
T Consensus       109 ~l~wp~~a~~~l~lldq~~~~~~~~~~~~~~~~~~~F~~~~~~~~~~wG~~~Fi~~~~L~~--~gyl~dD~l~I~~~V~v  186 (192)
T 2gkw_A          109 LLPWPFKQKVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPVFVAQTVLEN--GTYIKDDTIFIKVIVDT  186 (192)
T ss_dssp             GSCSSCCCCEEEEECCCSTTCCCEEEEECCCTTCTTSSCCSSSBCCCEEEEEEEEHHHHHH--TTSCBTTEEEEEEEECC
T ss_pred             cCCCcEEEEEEEEEECCCCCccceEEEEecCCCcccccCCCCCCcCCCChHHEeEHHHhCc--CCCeeCCEEEEEEEEEc
Confidence            358999999999999998775543221  00022567542    36899999999999986  59999999999999974

>4ghu_A TNF receptor-associated factor 3; alpha/beta, innate immunity, IFN pathway, immune system; 2.20A {Mus musculus} PDB: 2gkw_A 1kzz_A 1l0a_A 1zms_A 1rf3_A

Probab=98.83  E-value=5.4e-10  Score=88.89  Aligned_cols=70  Identities=16%  Similarity=0.211  Sum_probs=54.3

Q ss_pred             CCcEEEEEEEEEEEeCCCCceEEEeccc------ceeeEeecCcccccccccccccccccCCCCeEeCCEEEEEEEEE
Q 026621            9 LGWEVYVIFRLFVLDQNKDEFLILQDAM------GKERRFHVLKLEWGFDQFIPLEEFNDASNGYLVGDTCVFGAEVL   80 (236)
Q Consensus         9 ~~w~~~a~f~~~l~n~~~~~~~~~~~~~------~~~~~F~~~~~~wG~~~fi~~~~l~~~~~gyl~~d~~~i~~~v~   80 (236)
                      .+|.+.|+|+|.|+||.++..+......      ...+.|.....+|||.+||++++|.+  +|||.||+++|+|+|.
T Consensus       110 l~wp~~a~~~l~Lldq~~~~~~~~~~~~~~~~~~~f~rp~~~~~~~wG~~~Fi~~~~L~~--~gyL~dD~l~I~~~V~  185 (198)
T 4ghu_A          110 LPWPFKQKVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPVFVAQTVLEN--GTYIKDDTIFIKVIVD  185 (198)
T ss_dssp             SCSSCCCCEEEEECCCSTTCCCEEEEECCCTTSGGGSCCSSSBCCCEEEEEEEEHHHHHH--TTSCBTTBEEEEEEEC
T ss_pred             CCceEEEEEEEEEEcCCCCccceEEEeecCcccceecCCcccCcCCcCchhEeEHHHhhh--cCCeeCCEEEEEEEEE
Confidence            5899999999999999876554432100      01123445567999999999999984  8999999999999999

>1flk_A TNF receptor associated factor 3; TNF signaling, TRAF3, CD40-binding protein, apoptosis; 2.80A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1fll_A

Probab=98.78  E-value=1.3e-09  Score=88.62  Aligned_cols=72  Identities=17%  Similarity=0.236  Sum_probs=55.5

Q ss_pred             CCCcEEEEEEEEEEEeCCCCceEEEec--ccceeeEee----cCcccccccccccccccccCCCCeEeCCEEEEEEEEEE
Q 026621            8 GLGWEVYVIFRLFVLDQNKDEFLILQD--AMGKERRFH----VLKLEWGFDQFIPLEEFNDASNGYLVGDTCVFGAEVLV   81 (236)
Q Consensus         8 ~~~w~~~a~f~~~l~n~~~~~~~~~~~--~~~~~~~F~----~~~~~wG~~~fi~~~~l~~~~~gyl~~d~~~i~~~v~i   81 (236)
                      +.+|.+.|+|+|+|+||.+++.+....  .....+.|.    ....+|||++||++++|.+  +|||.||+++|+|+|.+
T Consensus       145 ~l~Wp~~a~~~l~lldq~~~~~~~~~~~~~~~~~~~F~rp~~~~~~~wG~~~Fi~~~~L~~--~gyL~dD~l~I~~~V~v  222 (228)
T 1flk_A          145 LLPWPFKQKVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPVFVAQTVLEN--GTYIKDDTIFIKVIVDT  222 (228)
T ss_dssp             SSCSSCCCCEEEEECCCSSSCCCEEEEECCCTTCTTSSSCSSSBCCCCSEEEEEEHHHHSS--STTCCSSEEEEEEECCC
T ss_pred             cCCCcEEEEEEEEEEcCCCCccceeeeecCCCccccccCCccCCCCCcCHHHeeEHHHHcc--CCCccCCEEEEEEEEEc
Confidence            458999999999999999776544321  001234575    2346899999999999985  79999999999999884

>4gwm_A Meprin A subunit beta; mulidomain structure, hydrolase; HET: NAG BMA FUC MAN; 1.85A {Homo sapiens} PDB: 4gwn_A*

Probab=92.29  E-value=0.053  Score=49.53  Aligned_cols=34  Identities=24%  Similarity=0.371  Sum_probs=29.7

Q ss_pred             ccccccccccccccccCCCCeEeCCEEEEEEEEE-Ee
Q 026621           47 LEWGFDQFIPLEEFNDASNGYLVGDTCVFGAEVL-VK   82 (236)
Q Consensus        47 ~~wG~~~fi~~~~l~~~~~gyl~~d~~~i~~~v~-i~   82 (236)
                      .+||++.||+++.|.  ...||.||.+.|.+.|. +.
T Consensus       533 ~~~G~~~fish~~l~--~r~fiK~d~~~i~~~~eD~~  567 (592)
T 4gwm_A          533 GGYGTSAFITHERLK--SRDFIKGDDVYILLTVEDIS  567 (592)
T ss_dssp             EEEEEEEEEEHHHHT--STTSSBTTBEEEEEEEEECG
T ss_pred             CCcCccccccHHHHh--hcCcccCCeEEEEEEEEeCc
Confidence            468999999999997  35799999999999998 53

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	236
d1czya1	152	b.8.1.1 (A:350-501) TNF receptor associated factor	3e-20
d1czya1	152	b.8.1.1 (A:350-501) TNF receptor associated factor	1e-05
d2cr2a1	146	b.8.1.1 (A:8-153) Speckle-type poz protein SPOP {H	3e-20
d2cr2a1	146	b.8.1.1 (A:8-153) Speckle-type poz protein SPOP {H	1e-08
d1l0aa1	155	b.8.1.1 (A:350-504) TNF receptor associated factor	2e-18
d1l0aa1	155	b.8.1.1 (A:350-504) TNF receptor associated factor	5e-06
d1lb6a_	155	b.8.1.1 (A:) TNF receptor associated factor 6 (TRA	5e-17
d1lb6a_	155	b.8.1.1 (A:) TNF receptor associated factor 6 (TRA	1e-05

>d1czya1 b.8.1.1 (A:350-501) TNF receptor associated factor 2 (TRAF2) {Human (Homo sapiens) [TaxId: 9606]} Length = 152

class: All beta proteins
fold: TRAF domain-like
superfamily: TRAF domain-like
family: MATH domain
domain: TNF receptor associated factor 2 (TRAF2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 82.1 bits (202), Expect = 3e-20
 Identities = 30/147 (20%), Positives = 56/147 (38%), Gaps = 20/147 (13%)

Query: 102 NYKHVWKIENFSKL-------EAKLYESEVFVAGNQ--KWKIKLYPKGQGVGRGSHISVY 152
           +   +WKI +F +              S  F       K  +++Y  G G GRG+H+S++
Sbjct: 2   DGVFIWKISDFPRKRQEAVAGRIPAIFSPAFYTSRYGYKMCLRIYLNGDGTGRGTHLSLF 61

Query: 153 LALAD-LSTITRDSKIYVHFTLRIRDQVLSKHNEKKASTWLSTSS---------EDWGWS 202
             +    +            TL + DQ   +H        +++SS            G  
Sbjct: 62  FVVMKGPNDALLRWPFNQKVTLMLLDQNNREHVIDAFRPDVTSSSFQRPVNDMNIASGCP 121

Query: 203 TFVELSYFNKAENGFLMNDVCIVEAEV 229
            F  +S   +A+N ++ +D   ++A V
Sbjct: 122 LFCPVSKM-EAKNSYVRDDAIFIKAIV 147

>d1czya1 b.8.1.1 (A:350-501) TNF receptor associated factor 2 (TRAF2) {Human (Homo sapiens) [TaxId: 9606]} Length = 152

class: All beta proteins
fold: TRAF domain-like
superfamily: TRAF domain-like
family: MATH domain
domain: TNF receptor associated factor 2 (TRAF2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.1 bits (98), Expect = 1e-05
 Identities = 19/76 (25%), Positives = 29/76 (38%), Gaps = 6/76 (7%)

Query: 9   LGWEVYVIFRLFVLDQNK-----DEFLILQDAMGKERRFHVLKLEWGFDQFIPLEEFNDA 63
           L W       L +LDQN      D F     +   +R  + + +  G   F P+ +  +A
Sbjct: 73  LRWPFNQKVTLMLLDQNNREHVIDAFRPDVTSSSFQRPVNDMNIASGCPLFCPVSKM-EA 131

Query: 64  SNGYLVGDTCVFGAEV 79
            N Y+  D     A V
Sbjct: 132 KNSYVRDDAIFIKAIV 147

>d2cr2a1 b.8.1.1 (A:8-153) Speckle-type poz protein SPOP {Human (Homo sapiens) [TaxId: 9606]} Length = 146

class: All beta proteins
fold: TRAF domain-like
superfamily: TRAF domain-like
family: MATH domain
domain: Speckle-type poz protein SPOP
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 81.7 bits (201), Expect = 3e-20
 Identities = 30/135 (22%), Positives = 55/135 (40%), Gaps = 11/135 (8%)

Query: 102 NYKHVWKIENFSKLEA---KLYESEVFVAGNQ---KWKIKLYPKGQGVGRGSHISVYLAL 155
            + ++W I NFS       ++ +S  F +G     KW +++ PKG       ++S+YL L
Sbjct: 4   KFSYMWTINNFSFCREEMGEVIKSSTFSSGANDKLKWCLRVNPKGLDEESKDYLSLYLLL 63

Query: 156 ADLSTITRDSKIYVHFTLRIRDQVLSKHNE-KKASTWLSTSSEDWGWSTFVELSYFNKAE 214
                    S++   F   I +    +    +    +     +DWG+  F+   +     
Sbjct: 64  VS----CPKSEVRAKFKFSILNAKGEETKAMESQRAYRFVQGKDWGFKKFIRRDFLLDEA 119

Query: 215 NGFLMNDVCIVEAEV 229
           NG L +D   +  EV
Sbjct: 120 NGLLPDDKLTLFCEV 134

>d2cr2a1 b.8.1.1 (A:8-153) Speckle-type poz protein SPOP {Human (Homo sapiens) [TaxId: 9606]} Length = 146

class: All beta proteins
fold: TRAF domain-like
superfamily: TRAF domain-like
family: MATH domain
domain: Speckle-type poz protein SPOP
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.2 bits (119), Expect = 1e-08
 Identities = 19/76 (25%), Positives = 30/76 (39%), Gaps = 3/76 (3%)

Query: 8   GLGWEVYVIFRLFVLDQNKDEFLILQDAMGKERRFHVLKLEWGFDQFIPLEEFNDASNGY 67
               EV   F+  +L+   +E   ++          V   +WGF +FI  +   D +NG 
Sbjct: 66  CPKSEVRAKFKFSILNAKGEETKAMESQR---AYRFVQGKDWGFKKFIRRDFLLDEANGL 122

Query: 68  LVGDTCVFGAEVLVKE 83
           L  D      EV V +
Sbjct: 123 LPDDKLTLFCEVSVVQ 138

>d1l0aa1 b.8.1.1 (A:350-504) TNF receptor associated factor 3 (TRAF3) {Human (Homo sapiens) [TaxId: 9606]} Length = 155

class: All beta proteins
fold: TRAF domain-like
superfamily: TRAF domain-like
family: MATH domain
domain: TNF receptor associated factor 3 (TRAF3)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 76.8 bits (188), Expect = 2e-18
 Identities = 27/146 (18%), Positives = 51/146 (34%), Gaps = 22/146 (15%)

Query: 104 KHVWKIENFSKL-------EAKLYESEVFVAGNQ--KWKIKLYPKGQGVGRGSHISVYLA 154
             +WKI ++ +        +     S+ F  G    K   ++Y  G G+G+G+H+S++  
Sbjct: 4   VLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLFFV 63

Query: 155 LAD-LSTITRDSKIYVHFTLRIRDQVLSKHNEKKASTWLSTSS----------EDWGWST 203
           +                 TL + DQ  S+ +   A      SS             G   
Sbjct: 64  IMRGEYDALLPWPFKQKVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPV 123

Query: 204 FVELSYFNKAENGFLMNDVCIVEAEV 229
           FV  +        ++ +D   ++  V
Sbjct: 124 FVAQTVLEN--GTYIKDDTIFIKVIV 147

>d1l0aa1 b.8.1.1 (A:350-504) TNF receptor associated factor 3 (TRAF3) {Human (Homo sapiens) [TaxId: 9606]} Length = 155

class: All beta proteins
fold: TRAF domain-like
superfamily: TRAF domain-like
family: MATH domain
domain: TNF receptor associated factor 3 (TRAF3)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.9 bits (100), Expect = 5e-06
 Identities = 11/77 (14%), Positives = 23/77 (29%), Gaps = 8/77 (10%)

Query: 9   LGWEVYVIFRLFVLDQNKDEFLIL------QDAMGKERRFHVLKLEWGFDQFIPLEEFND 62
           L W       L ++DQ      +        ++   ++    + +  G   F+       
Sbjct: 73  LPWPFKQKVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPVFVAQTVLE- 131

Query: 63  ASNGYLVGDTCVFGAEV 79
            +  Y+  DT      V
Sbjct: 132 -NGTYIKDDTIFIKVIV 147

>d1lb6a_ b.8.1.1 (A:) TNF receptor associated factor 6 (TRAF6) {Human (Homo sapiens) [TaxId: 9606]} Length = 155

class: All beta proteins
fold: TRAF domain-like
superfamily: TRAF domain-like
family: MATH domain
domain: TNF receptor associated factor 6 (TRAF6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.3 bits (179), Expect = 5e-17
 Identities = 27/152 (17%), Positives = 52/152 (34%), Gaps = 26/152 (17%)

Query: 102 NYKHVWKIENFSKL-------EAKLYESEVFVAGNQ--KWKIKLYPKGQGVGR-GSHISV 151
           N  ++WKI NF          +  +  S  F  G    K  ++L+ +     R  ++IS+
Sbjct: 4   NGIYIWKIGNFGMHLKCQEEEKPVVIHSPGFYTGKPGYKLCMRLHLQLPTAQRCANYISL 63

Query: 152 YLALADLST-ITRDSKIYVHFTLRIRDQVLSKHNEKKAST-------------WLSTSSE 197
           ++                    L I DQ  +   +                   +  + +
Sbjct: 64  FVHTMQGEYDSHLPWPFQGTIRLTILDQSEAPVRQNHEEIMDAKPELLAFQRPTIPRNPK 123

Query: 198 DWGWSTFVELSYFNKAENGFLMNDVCIVEAEV 229
            +G+ TF+ L    +    F+ +D  +V  EV
Sbjct: 124 GFGYVTFMHLEALRQ--RTFIKDDTLLVRCEV 153

>d1lb6a_ b.8.1.1 (A:) TNF receptor associated factor 6 (TRAF6) {Human (Homo sapiens) [TaxId: 9606]} Length = 155

class: All beta proteins
fold: TRAF domain-like
superfamily: TRAF domain-like
family: MATH domain
domain: TNF receptor associated factor 6 (TRAF6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.1 bits (98), Expect = 1e-05
 Identities = 18/80 (22%), Positives = 29/80 (36%), Gaps = 11/80 (13%)

Query: 9   LGWEVYVIFRLFVLDQNKDEFLIL----QDAMGKERRFHVLKLE-----WGFDQFIPLEE 59
           L W      RL +LDQ++           DA  +   F    +      +G+  F+ LE 
Sbjct: 76  LPWPFQGTIRLTILDQSEAPVRQNHEEIMDAKPELLAFQRPTIPRNPKGFGYVTFMHLEA 135

Query: 60  FNDASNGYLVGDTCVFGAEV 79
                  ++  DT +   EV
Sbjct: 136 LR--QRTFIKDDTLLVRCEV 153

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	236
d2cr2a1	146	Speckle-type poz protein SPOP {Human (Homo sapiens	99.95
d1czya1	152	TNF receptor associated factor 2 (TRAF2) {Human (H	99.95
d1l0aa1	155	TNF receptor associated factor 3 (TRAF3) {Human (H	99.94
d1lb6a_	155	TNF receptor associated factor 6 (TRAF6) {Human (H	99.93
d2cr2a1	146	Speckle-type poz protein SPOP {Human (Homo sapiens	99.28
d1czya1	152	TNF receptor associated factor 2 (TRAF2) {Human (H	98.92
d1l0aa1	155	TNF receptor associated factor 3 (TRAF3) {Human (H	98.87
d1lb6a_	155	TNF receptor associated factor 6 (TRAF6) {Human (H	98.86

>d2cr2a1 b.8.1.1 (A:8-153) Speckle-type poz protein SPOP {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: TRAF domain-like
superfamily: TRAF domain-like
family: MATH domain
domain: Speckle-type poz protein SPOP
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=7.7e-29  Score=187.61  Aligned_cols=130  Identities=23%  Similarity=0.475  Sum_probs=109.9

Q ss_pred             CCeEEEEEccccccc---CceeecccEEeCCe---EEEEEEecCCCCCCCCceEEEEEEecCCCCCCCCCeEEEEEEEEE
Q 026621          102 NYKHVWKIENFSKLE---AKLYESEVFVAGNQ---KWKIKLYPKGQGVGRGSHISVYLALADLSTITRDSKIYVHFTLRI  175 (236)
Q Consensus       102 ~~~~~w~I~nfs~l~---~~~~~S~~f~~gg~---~W~l~~yp~G~~~~~~~~lsiyL~~~~~~~~~~~w~~~~~f~l~l  175 (236)
                      ..+|+|+|+|||.++   ++.++||.|.+||+   +|+|.+||+|.....++||||||.+.+.    ..|++.++|+|.|
T Consensus         4 ~~~~~W~I~nfs~~~~~~~~~~~Sp~F~~~~~~~~~W~l~lyp~G~~~~~~~~lSv~L~~~~~----~~~~v~~~~~~~l   79 (146)
T d2cr2a1           4 KFSYMWTINNFSFCREEMGEVIKSSTFSSGANDKLKWCLRVNPKGLDEESKDYLSLYLLLVSC----PKSEVRAKFKFSI   79 (146)
T ss_dssp             EEEEEEEEETGGGCCCCSSCCEECCCBCSSSCCSCCBEEEECTTCSSSSSSSBCCEEEECCCC----SSSEEEEECEEEE
T ss_pred             EEEEEEEECCchHHhhcCCCEEECCCEEeCCcCCeEEEEEEEECCCCCCCCCEEEEEEEeccC----CCceEEEEEEEEE
Confidence            357999999999886   46799999998875   8999999999987777899999999875    3699999999999


Q ss_pred             EeCCCCcce-eeeceeeecCCCCCCchhccccccccccCCCCceECCEEEEEEEEEEEEec
Q 026621          176 RDQVLSKHN-EKKASTWLSTSSEDWGWSTFVELSYFNKAENGFLMNDVCIVEAEVLRISKA  235 (236)
Q Consensus       176 ~n~~~~~~~-~~~~~~~F~~~~~~~G~~~Fi~~~~L~~~~~gyl~~D~l~ie~~v~v~~~t  235 (236)
                      +||.++... .....+.+...+.+|||++||++++|+++.+|||+||+|+|+|+|+|++.+
T Consensus        80 ~n~~~~~~~~~~~~~~~~~~~~~~~G~~~fi~~~~l~~~~~g~l~~d~l~I~~~I~v~~e~  140 (146)
T d2cr2a1          80 LNAKGEETKAMESQRAYRFVQGKDWGFKKFIRRDFLLDEANGLLPDDKLTLFCEVSVVQDS  140 (146)
T ss_dssp             ECTTSCEEEEEECSCCEEEETTCEEEESCCSBHHHHSCTTTTSCTTSEEEEEEEEEEECCS
T ss_pred             EcCCCCcccceEecceEeCCCCCeeeccEEEEHHHhcCcccCceeCCEEEEEEEEEEEeCC
Confidence            999876532 222233344456889999999999999998999999999999999999765

>d1czya1 b.8.1.1 (A:350-501) TNF receptor associated factor 2 (TRAF2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: TRAF domain-like
superfamily: TRAF domain-like
family: MATH domain
domain: TNF receptor associated factor 2 (TRAF2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=1.2e-28  Score=187.84  Aligned_cols=130  Identities=22%  Similarity=0.307  Sum_probs=106.0

Q ss_pred             CCeEEEEEccccccc-------CceeecccEEeC--CeEEEEEEecCCCCCCCCceEEEEEEecCCCCC-CCCCeEEEEE
Q 026621          102 NYKHVWKIENFSKLE-------AKLYESEVFVAG--NQKWKIKLYPKGQGVGRGSHISVYLALADLSTI-TRDSKIYVHF  171 (236)
Q Consensus       102 ~~~~~w~I~nfs~l~-------~~~~~S~~f~~g--g~~W~l~~yp~G~~~~~~~~lsiyL~~~~~~~~-~~~w~~~~~f  171 (236)
                      .++|+|+|+|||.+.       +..++||+|.+|  |++|+|++||+|+..+.++|+||||++.+++.. +..|++.++|
T Consensus         2 ~g~f~W~I~nFs~l~~~~~~~~~~~~~Sp~F~~g~~Gy~w~l~~yP~G~~~~~~~~lSlyL~l~~~~~d~~~~~~~~~~~   81 (152)
T d1czya1           2 DGVFIWKISDFPRKRQEAVAGRIPAIFSPAFYTSRYGYKMCLRIYLNGDGTGRGTHLSLFFVVMKGPNDALLRWPFNQKV   81 (152)
T ss_dssp             SSEEEEEECSHHHHHHHHHTTSCCCEECCCEESSTTSCEEEEEEETTCCGGGTTTEEEEEEEEECCTTGGGSCSSCCCCE
T ss_pred             CCEEEEEECCcHHHHHhhhcCCCceEECcCEEcCCCCeEEEEEEEeCCCCCCCCCEEEEEEEEccCCcCcccccceeeEE
Confidence            578999999999874       346899999998  999999999999887667899999999876543 4589999999


Q ss_pred             EEEEEeCCCCcceeeec---------eeeecCCCCCCchhccccccccccCCCCceECCEEEEEEEEEEE
Q 026621          172 TLRIRDQVLSKHNEKKA---------STWLSTSSEDWGWSTFVELSYFNKAENGFLMNDVCIVEAEVLRI  232 (236)
Q Consensus       172 ~l~l~n~~~~~~~~~~~---------~~~F~~~~~~~G~~~Fi~~~~L~~~~~gyl~~D~l~ie~~v~v~  232 (236)
                      +|+|+||.++.+.....         .+.+.....+|||.+||++++|+ +.+|||+||+|+|+|+|.|.
T Consensus        82 ~~~l~d~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~G~~~fi~~~~L~-~~~gfl~dD~l~I~~~V~v~  150 (152)
T d1czya1          82 TLMLLDQNNREHVIDAFRPDVTSSSFQRPVNDMNIASGCPLFCPVSKME-AKNSYVRDDAIFIKAIVDLT  150 (152)
T ss_dssp             EEEECCTTSSCCEEEEECCCTTSGGGSCCSSSBCCCEEEEEEEETCCCC-CSTTTSCSSCEEEEEEECCT
T ss_pred             EEEEEcCCCCccceeeeccccccccccCCCcccccccchhhEEEHHHhc-ccCCcEeCCEEEEEEEEEec
Confidence            99999998875432211         11223335789999999999996 45799999999999999764

>d1l0aa1 b.8.1.1 (A:350-504) TNF receptor associated factor 3 (TRAF3) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: TRAF domain-like
superfamily: TRAF domain-like
family: MATH domain
domain: TNF receptor associated factor 3 (TRAF3)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=1.1e-27  Score=182.95  Aligned_cols=129  Identities=20%  Similarity=0.294  Sum_probs=105.6

Q ss_pred             CCeEEEEEccccccc-------CceeecccEEeC--CeEEEEEEecCCCCCCCCceEEEEEEecCCCCC-CCCCeEEEEE
Q 026621          102 NYKHVWKIENFSKLE-------AKLYESEVFVAG--NQKWKIKLYPKGQGVGRGSHISVYLALADLSTI-TRDSKIYVHF  171 (236)
Q Consensus       102 ~~~~~w~I~nfs~l~-------~~~~~S~~f~~g--g~~W~l~~yp~G~~~~~~~~lsiyL~~~~~~~~-~~~w~~~~~f  171 (236)
                      +++|+|+|.|||.+.       +..++||+|.+|  |++|+|++||+|...+.++|+||||++.+++.. ...|+++++|
T Consensus         2 ~g~f~W~I~nfs~~~~~~~~~~~~~~~S~~F~~~~~Gy~w~l~~yp~G~~~~~~~~lSlyL~l~~~~~d~~~~~~~~~~~   81 (155)
T d1l0aa1           2 NGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLFFVIMRGEYDALLPWPFKQKV   81 (155)
T ss_dssp             SSEEEEEEECHHHHHHHHHTTSCSEEECCCEESSTTSCEEEEEEETTCCGGGTTTEEEEEEEEECCTTTTTSCSSCCCCE
T ss_pred             CCEEEEEECCcHHHHHhhhcCCCcEEECcCEEeCCCCcEEEEEEEeCCCCCCCCCEEEEEEEEccCCcCcccCCcEEEEE
Confidence            589999999999874       347999999998  999999999999887667899999999887543 4679999999


Q ss_pred             EEEEEeCCCCc-ceeee---------ceeeecCCCCCCchhccccccccccCCCCceECCEEEEEEEEEEE
Q 026621          172 TLRIRDQVLSK-HNEKK---------ASTWLSTSSEDWGWSTFVELSYFNKAENGFLMNDVCIVEAEVLRI  232 (236)
Q Consensus       172 ~l~l~n~~~~~-~~~~~---------~~~~F~~~~~~~G~~~Fi~~~~L~~~~~gyl~~D~l~ie~~v~v~  232 (236)
                      +|.|+||.++. +....         ..+.+.....+|||++||++++|++  +|||+||+|+|+|+|.+.
T Consensus        82 ~~~l~~q~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~G~~~fi~~~~L~~--~gfl~dD~l~I~~~V~~~  150 (155)
T d1l0aa1          82 TLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPVFVAQTVLEN--GTYIKDDTIFIKVIVDTS  150 (155)
T ss_dssp             EEEECCCSSSCCCEEEEECCCTTSTTSSCCSSSBCCCEEEEEEEEHHHHHT--TTTCBTTEEEEEEEECCS
T ss_pred             EEEEecCCCCccceeEEEeeccccccccccccccccCcChhheeEHHHhhh--CCCEECCEEEEEEEEEeC
Confidence            99999998764 22111         1122333456899999999999985  799999999999998754

>d1lb6a_ b.8.1.1 (A:) TNF receptor associated factor 6 (TRAF6) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: TRAF domain-like
superfamily: TRAF domain-like
family: MATH domain
domain: TNF receptor associated factor 6 (TRAF6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=2.6e-26  Score=175.04  Aligned_cols=129  Identities=21%  Similarity=0.244  Sum_probs=104.3

Q ss_pred             CCCCeEEEEEccccccc-------CceeecccEEeC--CeEEEEEEecCCCCCC-CCceEEEEEEecCCCC-CCCCCeEE
Q 026621          100 ASNYKHVWKIENFSKLE-------AKLYESEVFVAG--NQKWKIKLYPKGQGVG-RGSHISVYLALADLST-ITRDSKIY  168 (236)
Q Consensus       100 ~~~~~~~w~I~nfs~l~-------~~~~~S~~f~~g--g~~W~l~~yp~G~~~~-~~~~lsiyL~~~~~~~-~~~~w~~~  168 (236)
                      ...++|+|+|+|||.+.       +..++||+|.+|  |++|+|.+||+|...+ ..+|+|+||.+.+++. ...+|++.
T Consensus         2 ~~~G~f~W~I~nfs~~~~~~~~~~~~~i~Sp~F~~g~~Gy~wrl~~yp~g~~~~~~~~~lsvyL~l~~~~~d~~~~~~~~   81 (155)
T d1lb6a_           2 QCNGIYIWKIGNFGMHLKCQEEEKPVVIHSPGFYTGKPGYKLCMRLHLQLPTAQRCANYISLFVHTMQGEYDSHLPWPFQ   81 (155)
T ss_dssp             CCCEEEEEEECCHHHHHHHHHTTCCEEEECCCEESSSSCCEEEEEEEECCTTCTTTTTEEEEEEEEECCTTGGGSCSSCC
T ss_pred             ccccEEEEEECChHHHHHhhhcCCCcEEECcCEEeCCCCcEEEEEEEeCCCCCCCCCCEEEEEEEEecCcccccCCCcEE
Confidence            45689999999999874       357999999998  9999999999997764 3579999999988764 35689999


Q ss_pred             EEEEEEEEeCCCCcc-e--eee----------ceeeecCCCCCCchhccccccccccCCCCceECCEEEEEEEEE
Q 026621          169 VHFTLRIRDQVLSKH-N--EKK----------ASTWLSTSSEDWGWSTFVELSYFNKAENGFLMNDVCIVEAEVL  230 (236)
Q Consensus       169 ~~f~l~l~n~~~~~~-~--~~~----------~~~~F~~~~~~~G~~~Fi~~~~L~~~~~gyl~~D~l~ie~~v~  230 (236)
                      ++++|.|+||.+... .  ...          ..+.+.....+|||.+||++++|++  +|||+||+|+|+|+|+
T Consensus        82 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~fi~~~~L~~--~gyl~dD~l~I~~~V~  154 (155)
T d1lb6a_          82 GTIRLTILDQSEAPVRQNHEEIMDAKPELLAFQRPTIPRNPKGFGYVTFMHLEALRQ--RTFIKDDTLLVRCEVS  154 (155)
T ss_dssp             SEEEEEECCCSCTTSCCCEEEEEECCTTSGGGSCCSSSBCSEEEEEEEEEEGGGGGT--SCCCBTTBEEEEEEEE
T ss_pred             EEEEEEEECCCCCccceeeEEeeecCCccccccCCcccCCcCCcChHHeeEHHHhcc--CCCEECCEEEEEEEEE
Confidence            999999999987542 1  111          0112333456899999999999986  7999999999999986

>d2cr2a1 b.8.1.1 (A:8-153) Speckle-type poz protein SPOP {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: TRAF domain-like
superfamily: TRAF domain-like
family: MATH domain
domain: Speckle-type poz protein SPOP
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=2.8e-12  Score=95.35  Aligned_cols=70  Identities=27%  Similarity=0.386  Sum_probs=61.5

Q ss_pred             CCcEEEEEEEEEEEeCCCCceEEEecccceeeEeecCcccccccccccccccccCCCCeEeCCEEEEEEEEEE
Q 026621            9 LGWEVYVIFRLFVLDQNKDEFLILQDAMGKERRFHVLKLEWGFDQFIPLEEFNDASNGYLVGDTCVFGAEVLV   81 (236)
Q Consensus         9 ~~w~~~a~f~~~l~n~~~~~~~~~~~~~~~~~~F~~~~~~wG~~~fi~~~~l~~~~~gyl~~d~~~i~~~v~i   81 (236)
                      ..|.+.|+|+|.|+||+++.....+.   ..+.|.....+|||++||++++|+++.+|||+||+++|+++|.|
T Consensus        67 ~~~~v~~~~~~~l~n~~~~~~~~~~~---~~~~~~~~~~~~G~~~fi~~~~l~~~~~g~l~~d~l~I~~~I~v  136 (146)
T d2cr2a1          67 PKSEVRAKFKFSILNAKGEETKAMES---QRAYRFVQGKDWGFKKFIRRDFLLDEANGLLPDDKLTLFCEVSV  136 (146)
T ss_dssp             SSSEEEEECEEEEECTTSCEEEEEEC---SCCEEEETTCEEEESCCSBHHHHSCTTTTSCTTSEEEEEEEEEE
T ss_pred             CCceEEEEEEEEEEcCCCCcccceEe---cceEeCCCCCeeeccEEEEHHHhcCcccCceeCCEEEEEEEEEE
Confidence            57999999999999998777766665   45556666789999999999999999999999999999999994

>d1czya1 b.8.1.1 (A:350-501) TNF receptor associated factor 2 (TRAF2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: TRAF domain-like
superfamily: TRAF domain-like
family: MATH domain
domain: TNF receptor associated factor 2 (TRAF2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.92  E-value=1e-10  Score=87.29  Aligned_cols=72  Identities=26%  Similarity=0.344  Sum_probs=54.7

Q ss_pred             CCCcEEEEEEEEEEEeCCCCceEEEecccc-----eeeEeecCcccccccccccccccccCCCCeEeCCEEEEEEEEE
Q 026621            8 GLGWEVYVIFRLFVLDQNKDEFLILQDAMG-----KERRFHVLKLEWGFDQFIPLEEFNDASNGYLVGDTCVFGAEVL   80 (236)
Q Consensus         8 ~~~w~~~a~f~~~l~n~~~~~~~~~~~~~~-----~~~~F~~~~~~wG~~~fi~~~~l~~~~~gyl~~d~~~i~~~v~   80 (236)
                      +..|.+.|+|+|.|+||.+++.....-...     ..+.+......|||.+||++++| ++++|||.||+++|+|+|.
T Consensus        72 ~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~G~~~fi~~~~L-~~~~gfl~dD~l~I~~~V~  148 (152)
T d1czya1          72 LLRWPFNQKVTLMLLDQNNREHVIDAFRPDVTSSSFQRPVNDMNIASGCPLFCPVSKM-EAKNSYVRDDAIFIKAIVD  148 (152)
T ss_dssp             GSCSSCCCCEEEEECCTTSSCCEEEEECCCTTSGGGSCCSSSBCCCEEEEEEEETCCC-CCSTTTSCSSCEEEEEEEC
T ss_pred             ccccceeeEEEEEEEcCCCCccceeeeccccccccccCCCcccccccchhhEEEHHHh-cccCCcEeCCEEEEEEEEE
Confidence            458999999999999998776544321000     11234455678999999999998 5568999999999999986

>d1l0aa1 b.8.1.1 (A:350-504) TNF receptor associated factor 3 (TRAF3) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: TRAF domain-like
superfamily: TRAF domain-like
family: MATH domain
domain: TNF receptor associated factor 3 (TRAF3)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.87  E-value=2.2e-10  Score=85.54  Aligned_cols=71  Identities=15%  Similarity=0.182  Sum_probs=55.6

Q ss_pred             CCCcEEEEEEEEEEEeCCCCceEEEeccc------ceeeEeecCcccccccccccccccccCCCCeEeCCEEEEEEEEE
Q 026621            8 GLGWEVYVIFRLFVLDQNKDEFLILQDAM------GKERRFHVLKLEWGFDQFIPLEEFNDASNGYLVGDTCVFGAEVL   80 (236)
Q Consensus         8 ~~~w~~~a~f~~~l~n~~~~~~~~~~~~~------~~~~~F~~~~~~wG~~~fi~~~~l~~~~~gyl~~d~~~i~~~v~   80 (236)
                      ...|.+.|+|+|.|+||.++..+......      ...+.+......|||++||++++|.  ++|||+||+++|+++|.
T Consensus        72 ~~~~~~~~~~~~~l~~q~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~G~~~fi~~~~L~--~~gfl~dD~l~I~~~V~  148 (155)
T d1l0aa1          72 LLPWPFKQKVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPVFVAQTVLE--NGTYIKDDTIFIKVIVD  148 (155)
T ss_dssp             TSCSSCCCCEEEEECCCSSSCCCEEEEECCCTTSTTSSCCSSSBCCCEEEEEEEEHHHHH--TTTTCBTTEEEEEEEEC
T ss_pred             ccCCcEEEEEEEEEecCCCCccceeEEEeeccccccccccccccccCcChhheeEHHHhh--hCCCEECCEEEEEEEEE
Confidence            46799999999999999887765543200      0123455666789999999999997  47999999999998886

>d1lb6a_ b.8.1.1 (A:) TNF receptor associated factor 6 (TRAF6) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: TRAF domain-like
superfamily: TRAF domain-like
family: MATH domain
domain: TNF receptor associated factor 6 (TRAF6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.86  E-value=2.5e-10  Score=85.21  Aligned_cols=71  Identities=21%  Similarity=0.302  Sum_probs=54.7

Q ss_pred             CCCcEEEEEEEEEEEeCCCCceEEEecc---------cceeeEeecCcccccccccccccccccCCCCeEeCCEEEEEEE
Q 026621            8 GLGWEVYVIFRLFVLDQNKDEFLILQDA---------MGKERRFHVLKLEWGFDQFIPLEEFNDASNGYLVGDTCVFGAE   78 (236)
Q Consensus         8 ~~~w~~~a~f~~~l~n~~~~~~~~~~~~---------~~~~~~F~~~~~~wG~~~fi~~~~l~~~~~gyl~~d~~~i~~~   78 (236)
                      +..|.+.|+++|.|+||.++........         ....++|.....+|||++||++++|.  ++|||+||+++|+|+
T Consensus        75 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~fi~~~~L~--~~gyl~dD~l~I~~~  152 (155)
T d1lb6a_          75 HLPWPFQGTIRLTILDQSEAPVRQNHEEIMDAKPELLAFQRPTIPRNPKGFGYVTFMHLEALR--QRTFIKDDTLLVRCE  152 (155)
T ss_dssp             GSCSSCCSEEEEEECCCSCTTSCCCEEEEEECCTTSGGGSCCSSSBCSEEEEEEEEEEGGGGG--TSCCCBTTBEEEEEE
T ss_pred             cCCCcEEEEEEEEEECCCCCccceeeEEeeecCCccccccCCcccCCcCCcChHHeeEHHHhc--cCCCEECCEEEEEEE
Confidence            4689999999999999987654321110         00123566677899999999999997  479999999999999


Q ss_pred             EE
Q 026621           79 VL   80 (236)
Q Consensus        79 v~   80 (236)
                      |.
T Consensus       153 V~  154 (155)
T d1lb6a_         153 VS  154 (155)
T ss_dssp             EE
T ss_pred             EE
Confidence            85