Citrus Sinensis ID: 026637
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 235 | 2.2.26 [Sep-21-2011] | |||||||
| Q5R3I4 | 469 | Tetratricopeptide repeat | yes | no | 0.536 | 0.268 | 0.330 | 3e-12 | |
| Q5RFF7 | 469 | Tetratricopeptide repeat | yes | no | 0.536 | 0.268 | 0.323 | 2e-11 | |
| A3KMP2 | 465 | Tetratricopeptide repeat | yes | no | 0.536 | 0.270 | 0.303 | 2e-10 | |
| A2VD82 | 469 | Tetratricopeptide repeat | N/A | no | 0.514 | 0.257 | 0.314 | 2e-10 | |
| Q6DIV2 | 469 | Tetratricopeptide repeat | yes | no | 0.859 | 0.430 | 0.270 | 2e-10 | |
| A3KPN8 | 466 | Tetratricopeptide repeat | yes | no | 0.927 | 0.467 | 0.243 | 6e-09 |
| >sp|Q5R3I4|TTC38_HUMAN Tetratricopeptide repeat protein 38 OS=Homo sapiens GN=TTC38 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 72.0 bits (175), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 43/130 (33%), Positives = 66/130 (50%), Gaps = 4/130 (3%)
Query: 23 FIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEEC 82
++ GI +F L+E AE+ AK+ L IN D WS H + H+ + K+ ++FM+
Sbjct: 181 YVKGIYSFGLMETNFYDQAEKLAKEALSINPTDAWSVHTVAHIHEMKAEIKDGLEFMQHS 240
Query: 83 SSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNAL 142
+ W S + HN+WH AL YL L IYD HI L+ DA+ V ++
Sbjct: 241 ETFWKD-SDMLACHNYWHWAL-YLIEKGEYEAALTIYDTHILPSLQANDAMLDVV--DSC 296
Query: 143 GLLLRVYVRG 152
+L R+ + G
Sbjct: 297 SMLYRLQMEG 306
|
Homo sapiens (taxid: 9606) |
| >sp|Q5RFF7|TTC38_PONAB Tetratricopeptide repeat protein 38 OS=Pongo abelii GN=TTC38 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 69.7 bits (169), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 42/130 (32%), Positives = 65/130 (50%), Gaps = 4/130 (3%)
Query: 23 FIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEEC 82
++ GI +F L+E AE+ AK+ L IN D WS H + H+ + K+ ++FM+
Sbjct: 181 YVKGIYSFGLMETNFYDQAEKLAKEALSINPTDAWSVHTVAHIHEMKAEIKDGLEFMQHS 240
Query: 83 SSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNAL 142
+ W S + HN+WH AL YL L IYD HI L+ A+ V ++
Sbjct: 241 ETLWKD-SDMLACHNYWHWAL-YLIEKGEYEAALTIYDTHILPSLQANGAMLDVV--DSC 296
Query: 143 GLLLRVYVRG 152
+L R+ + G
Sbjct: 297 SMLYRLQMEG 306
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Pongo abelii (taxid: 9601) |
| >sp|A3KMP2|TTC38_MOUSE Tetratricopeptide repeat protein 38 OS=Mus musculus GN=Ttc38 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 66.2 bits (160), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 64/132 (48%), Gaps = 6/132 (4%)
Query: 1 MGRPDLCFDIIHQVLPYNQQE----DFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDC 56
+G + D + +V P+ + ++ GI +F L+E A++ AK+ L I D
Sbjct: 151 LGYQEQMRDSVARVYPFWTPDIPLNSYVKGIYSFGLMETNFYDQAQKLAKEALSIEPTDA 210
Query: 57 WSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVL 116
WS H + HV + K+ ++FM++ W S + HN+WH AL YL L
Sbjct: 211 WSVHTVAHVHEMRAEIKDGLEFMQQSEGHWKD-SDMLACHNYWHWAL-YLIEKGDYEAAL 268
Query: 117 EIYDNHIWKELE 128
IYD+HI L+
Sbjct: 269 TIYDSHILPSLQ 280
|
Mus musculus (taxid: 10090) |
| >sp|A2VD82|TTC38_XENLA Tetratricopeptide repeat protein 38 OS=Xenopus laevis GN=ttc38 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 66.2 bits (160), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 60/127 (47%), Gaps = 6/127 (4%)
Query: 1 MGRPDLCFDIIHQVLPYNQQE----DFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDC 56
+G D + +VLPY + E ++ G+ +F LLE A + AK+ L + + D
Sbjct: 154 LGEQRQMRDSVARVLPYWKPETPLSSYVKGMYSFGLLETNFYDQALKVAKEALAVERTDS 213
Query: 57 WSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVL 116
WS H + HV + + FM+E + W S + H +WH AL YL L
Sbjct: 214 WSVHTIAHVHEMKADLDSGLSFMQETENNWKG-SDMLACHVYWHWAL-YLIEKGDYEAAL 271
Query: 117 EIYDNHI 123
+YDNHI
Sbjct: 272 TLYDNHI 278
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Xenopus laevis (taxid: 8355) |
| >sp|Q6DIV2|TTC38_XENTR Tetratricopeptide repeat protein 38 OS=Xenopus tropicalis GN=ttc38 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 65.9 bits (159), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 60/222 (27%), Positives = 99/222 (44%), Gaps = 20/222 (9%)
Query: 9 DIIHQVLPY----NQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCH 64
D + +VLPY ++ G+ +F LLE A + AK+ L +++ D WS H + H
Sbjct: 162 DSVARVLPYWKPGTPLSSYVKGMYSFGLLETNFYDQALKVAKEALAVDQTDSWSVHTVAH 221
Query: 65 VLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIW 124
V + + FM+E + W S + H +WH AL ++E L +YDNHI
Sbjct: 222 VHEMRADLDSGLAFMQETENNWKG-SDMLACHVYWHWALYFIE-KGDYEAALTLYDNHI- 278
Query: 125 KELEKPDAVHPEVYLNAL---GLLLRVYVRGELDVFGNRLKVLADCVADQANWYLECHLD 181
P L+ + +L R+ + G ++V G+R K L ++ D
Sbjct: 279 ----APQCFASGTMLDVVDNSSMLYRLQLEG-VNV-GDRWKNLLQITKSHTQDHMLIFND 332
Query: 182 LLILWALANTGEVSKAEDLLKGLKSRHSKMIKKKQELMQTGV 223
L L +++ G SK ED+ + L ++ K E Q G+
Sbjct: 333 LHFL--MSSLG--SKDEDMTRELVESMQELSKSPGENQQHGL 370
|
Xenopus tropicalis (taxid: 8364) |
| >sp|A3KPN8|TTC38_DANRE Tetratricopeptide repeat protein 38 OS=Danio rerio GN=ttc38 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 61.2 bits (147), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 58/238 (24%), Positives = 101/238 (42%), Gaps = 20/238 (8%)
Query: 1 MGRPDLCFDIIHQVLP--------YNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKIN 52
+G D + +V+P Y Q I G+ +F LLE +AE+ AK+ L +
Sbjct: 154 LGEQTQMRDSVARVMPHWKPHMPLYRQ----IKGMYSFGLLETRLYDEAEKMAKEALSLT 209
Query: 53 KHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPM 112
D WS HA+ HV + ++ + FM W+ C + HN+WH AL ++E +
Sbjct: 210 PEDGWSVHAVAHVHEMKAEVEKGLNFMASTEKNWTVC-DMLACHNYWHWALYHIEKGN-Y 267
Query: 113 RKVLEIYDNHIWKELEKPDAVHPEVYLNALGLLLRVYVRGELDVFGNRLKVLADCVADQA 172
L+I+D + + K A+ V ++ LL R+ + G G R + L +
Sbjct: 268 EAALKIFDEQVSQRCVKSGAMLDIV--DSCSLLYRLELEGV--SVGERYRELLQVTQPHS 323
Query: 173 NWYLECHLDLLILWALANTGEVSKAEDLLKGLKSRHSKMIKKKQELMQTGVQVSSDIC 230
+ DL L + + + LL+ L+ + +Q +Q +V +C
Sbjct: 324 EDHTLLFNDLHFLMVSLGSKDTGTTQRLLESLQELAKDPAENRQ--LQIAERVGLPMC 379
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Danio rerio (taxid: 7955) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 235 | ||||||
| 224100425 | 472 | predicted protein [Populus trichocarpa] | 0.961 | 0.478 | 0.743 | 1e-92 | |
| 357486429 | 468 | Tetratricopeptide repeat protein [Medica | 0.948 | 0.476 | 0.681 | 2e-89 | |
| 357486431 | 392 | Tetratricopeptide repeat protein [Medica | 0.948 | 0.568 | 0.681 | 4e-89 | |
| 225424865 | 468 | PREDICTED: tetratricopeptide repeat prot | 0.948 | 0.476 | 0.708 | 3e-85 | |
| 356500732 | 468 | PREDICTED: tetratricopeptide repeat prot | 0.957 | 0.480 | 0.650 | 4e-84 | |
| 18396209 | 468 | StaR-like protein domain-containing prot | 0.974 | 0.489 | 0.650 | 3e-83 | |
| 13605637 | 468 | At1g27150/T7N9_21 [Arabidopsis thaliana] | 0.974 | 0.489 | 0.650 | 6e-83 | |
| 21537367 | 468 | unknown [Arabidopsis thaliana] | 0.974 | 0.489 | 0.646 | 9e-82 | |
| 449434849 | 469 | PREDICTED: tetratricopeptide repeat prot | 0.948 | 0.475 | 0.645 | 2e-81 | |
| 356497832 | 469 | PREDICTED: tetratricopeptide repeat prot | 0.961 | 0.481 | 0.654 | 1e-80 |
| >gi|224100425|ref|XP_002311871.1| predicted protein [Populus trichocarpa] gi|222851691|gb|EEE89238.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 345 bits (884), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 168/226 (74%), Positives = 197/226 (87%)
Query: 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQH 60
MGRPDL D++ QVLP NQ+ED+I+G+LAFSLLELG+M+DAEEAA+KG +INK D W+QH
Sbjct: 138 MGRPDLSLDLVQQVLPRNQEEDYIYGMLAFSLLELGRMADAEEAARKGYEINKQDYWAQH 197
Query: 61 ALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYD 120
A+CHVLQ+ C FK+AV FMEECSS+WSSC SFM THNWWHVALCYLEGH+P+RKVLE+YD
Sbjct: 198 AMCHVLQYQCRFKDAVDFMEECSSSWSSCLSFMLTHNWWHVALCYLEGHAPVRKVLEVYD 257
Query: 121 NHIWKELEKPDAVHPEVYLNALGLLLRVYVRGELDVFGNRLKVLADCVADQANWYLECHL 180
HIWKELEK DAV PEVYLNALGLLLRVY+RGELD+F +RL LA C+ DQANWYLE HL
Sbjct: 258 QHIWKELEKADAVPPEVYLNALGLLLRVYLRGELDIFDDRLNTLASCITDQANWYLEWHL 317
Query: 181 DLLILWALANTGEVSKAEDLLKGLKSRHSKMIKKKQELMQTGVQVS 226
D+LILWALA TGE SKAEDLL+GLKSR KM KKKQ+ MQ ++++
Sbjct: 318 DVLILWALAKTGEPSKAEDLLEGLKSRIQKMSKKKQQRMQKVIRLA 363
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357486429|ref|XP_003613502.1| Tetratricopeptide repeat protein [Medicago truncatula] gi|355514837|gb|AES96460.1| Tetratricopeptide repeat protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 334 bits (856), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 152/223 (68%), Positives = 190/223 (85%)
Query: 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQH 60
MGRPDL +++QVLP N+ E+FI+G+LAF LLELGQM +AEEAAK+G +IN D WSQH
Sbjct: 137 MGRPDLSLSLVNQVLPQNEGENFIYGMLAFPLLELGQMKEAEEAAKRGFEINNQDGWSQH 196
Query: 61 ALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYD 120
A CHVLQ++C F+EAV+FMEECS +W+S SFM THNWWHVALCYLEG++PM++VLE+YD
Sbjct: 197 ATCHVLQYECRFREAVEFMEECSPSWNSFLSFMLTHNWWHVALCYLEGNAPMQRVLEVYD 256
Query: 121 NHIWKELEKPDAVHPEVYLNALGLLLRVYVRGELDVFGNRLKVLADCVADQANWYLECHL 180
N+IWKEL+K DA EVYLNA+ LLLR+ VR EL+ FG+RLK+LAD +ADQANWYLE HL
Sbjct: 257 NYIWKELDKTDATVAEVYLNAVALLLRLCVRDELEFFGDRLKMLADRLADQANWYLEWHL 316
Query: 181 DLLILWALANTGEVSKAEDLLKGLKSRHSKMIKKKQELMQTGV 223
D+L +WALA TG++SKAE+LLKGLK R S+M KKKQ++MQ G+
Sbjct: 317 DILTVWALAKTGQISKAEELLKGLKERISRMTKKKQQIMQKGM 359
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357486431|ref|XP_003613503.1| Tetratricopeptide repeat protein [Medicago truncatula] gi|355514838|gb|AES96461.1| Tetratricopeptide repeat protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 333 bits (853), Expect = 4e-89, Method: Compositional matrix adjust.
Identities = 152/223 (68%), Positives = 190/223 (85%)
Query: 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQH 60
MGRPDL +++QVLP N+ E+FI+G+LAF LLELGQM +AEEAAK+G +IN D WSQH
Sbjct: 137 MGRPDLSLSLVNQVLPQNEGENFIYGMLAFPLLELGQMKEAEEAAKRGFEINNQDGWSQH 196
Query: 61 ALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYD 120
A CHVLQ++C F+EAV+FMEECS +W+S SFM THNWWHVALCYLEG++PM++VLE+YD
Sbjct: 197 ATCHVLQYECRFREAVEFMEECSPSWNSFLSFMLTHNWWHVALCYLEGNAPMQRVLEVYD 256
Query: 121 NHIWKELEKPDAVHPEVYLNALGLLLRVYVRGELDVFGNRLKVLADCVADQANWYLECHL 180
N+IWKEL+K DA EVYLNA+ LLLR+ VR EL+ FG+RLK+LAD +ADQANWYLE HL
Sbjct: 257 NYIWKELDKTDATVAEVYLNAVALLLRLCVRDELEFFGDRLKMLADRLADQANWYLEWHL 316
Query: 181 DLLILWALANTGEVSKAEDLLKGLKSRHSKMIKKKQELMQTGV 223
D+L +WALA TG++SKAE+LLKGLK R S+M KKKQ++MQ G+
Sbjct: 317 DILTVWALAKTGQISKAEELLKGLKERISRMTKKKQQIMQKGM 359
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Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225424865|ref|XP_002274190.1| PREDICTED: tetratricopeptide repeat protein 38 [Vitis vinifera] gi|296086448|emb|CBI32037.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 320 bits (820), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 158/223 (70%), Positives = 188/223 (84%)
Query: 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQH 60
MGRPDL F+++ QVL NQ E++I+G+LAFSLLE GQM DAE+AAK+G +INK DCWSQH
Sbjct: 137 MGRPDLSFNLVQQVLHENQNENYIYGMLAFSLLECGQMVDAEKAAKRGFEINKQDCWSQH 196
Query: 61 ALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYD 120
ALCHVLQ++C FKEAV+FMEECSS+WS CSSFM THNWWHV+LCYLEGHS +RKVLE+YD
Sbjct: 197 ALCHVLQYECRFKEAVEFMEECSSSWSLCSSFMLTHNWWHVSLCYLEGHSSIRKVLEVYD 256
Query: 121 NHIWKELEKPDAVHPEVYLNALGLLLRVYVRGELDVFGNRLKVLADCVADQANWYLECHL 180
N+IWKELE+PDA EVYLNALGLLLRVYVRG VF +RLK L + DQ+ WY+E HL
Sbjct: 257 NYIWKELERPDAASAEVYLNALGLLLRVYVRGHAVVFEDRLKTLVSRLTDQSTWYIEWHL 316
Query: 181 DLLILWALANTGEVSKAEDLLKGLKSRHSKMIKKKQELMQTGV 223
DLL +WALA+TGE+ K E LL+GLKSR S+M KKKQ+ MQ G+
Sbjct: 317 DLLTIWALASTGELVKTEALLQGLKSRLSRMSKKKQQTMQRGI 359
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356500732|ref|XP_003519185.1| PREDICTED: tetratricopeptide repeat protein 38-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 316 bits (810), Expect = 4e-84, Method: Compositional matrix adjust.
Identities = 147/226 (65%), Positives = 190/226 (84%), Gaps = 1/226 (0%)
Query: 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQH 60
MG P L +I +VLP+N+ E+FI+G+LAF LLELG+M +AE+AAK+G +INK D W+QH
Sbjct: 138 MGLPGLSLSLIQKVLPHNEGENFIYGMLAFPLLELGRMEEAEKAAKRGFEINKQDSWAQH 197
Query: 61 ALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYD 120
ALCHVLQ+ CCF+EAV+FMEECSS+ SSFM THNWWHVALCYLEG++P ++VLEIYD
Sbjct: 198 ALCHVLQYKCCFREAVKFMEECSSS-WGSSSFMLTHNWWHVALCYLEGNAPRQRVLEIYD 256
Query: 121 NHIWKELEKPDAVHPEVYLNALGLLLRVYVRGELDVFGNRLKVLADCVADQANWYLECHL 180
N+IWKEL++ D++ EVYLNA GLLLR+YVRGELD+ G+RLK+LA+C+ +Q NWY+E H
Sbjct: 257 NYIWKELDRNDSMSAEVYLNAAGLLLRLYVRGELDIIGDRLKMLAECLTNQENWYMEWHF 316
Query: 181 DLLILWALANTGEVSKAEDLLKGLKSRHSKMIKKKQELMQTGVQVS 226
D+LI+W LA TGE+SKAEDLLKGLK+R +M KKKQ+ MQ G+ ++
Sbjct: 317 DVLIVWTLAKTGEISKAEDLLKGLKNRFLRMTKKKQQRMQRGMMLA 362
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|18396209|ref|NP_564271.1| StaR-like protein domain-containing protein [Arabidopsis thaliana] gi|8778861|gb|AAF79860.1|AC000348_13 T7N9.21 [Arabidopsis thaliana] gi|332192666|gb|AEE30787.1| StaR-like protein domain-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 313 bits (802), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 149/229 (65%), Positives = 180/229 (78%)
Query: 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQH 60
MG+PD ++ QVLP NQ+E +I G+LAF LLELG+M +A A++KG +INK D W+ H
Sbjct: 137 MGQPDPFLGLVQQVLPANQEESYIHGLLAFPLLELGRMEEAAAASRKGYEINKEDAWAHH 196
Query: 61 ALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYD 120
LCHVLQH+C FKEAV+FME + TW SCSSFMYTHNWWHVALCYLEG SPM KV EIYD
Sbjct: 197 CLCHVLQHECRFKEAVEFMEALAGTWPSCSSFMYTHNWWHVALCYLEGGSPMSKVEEIYD 256
Query: 121 NHIWKELEKPDAVHPEVYLNALGLLLRVYVRGELDVFGNRLKVLADCVADQANWYLECHL 180
+HIWKELEK DAV PEVYLNALGLL+R+ VR LD F +RLK LA + +QANWYLE HL
Sbjct: 257 HHIWKELEKDDAVPPEVYLNALGLLIRLDVRDALDGFEDRLKNLAVRLTNQANWYLEWHL 316
Query: 181 DLLILWALANTGEVSKAEDLLKGLKSRHSKMIKKKQELMQTGVQVSSDI 229
D+LI+WALA GE S+A +LL+GLK R SK KKKQ++MQ G+Q+ +
Sbjct: 317 DILIVWALAKVGETSRAHELLEGLKFRLSKKNKKKQQVMQKGIQLGEAV 365
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|13605637|gb|AAK32812.1|AF361799_1 At1g27150/T7N9_21 [Arabidopsis thaliana] gi|27363406|gb|AAO11622.1| At1g27150/T7N9_21 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 312 bits (800), Expect = 6e-83, Method: Compositional matrix adjust.
Identities = 149/229 (65%), Positives = 179/229 (78%)
Query: 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQH 60
MG+PD ++ QVLP NQ+E +I G+LAF LLELG+M +A A++KG +INK D W+ H
Sbjct: 137 MGQPDPFLGLVQQVLPANQEESYIHGLLAFPLLELGRMEEAAAASRKGYEINKEDAWAHH 196
Query: 61 ALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYD 120
LCHVLQH+C FKEAV+FME + TW SCSSFMYTHNWWHVALCYLEG SPM KV EIYD
Sbjct: 197 CLCHVLQHECRFKEAVEFMEALAGTWPSCSSFMYTHNWWHVALCYLEGGSPMSKVEEIYD 256
Query: 121 NHIWKELEKPDAVHPEVYLNALGLLLRVYVRGELDVFGNRLKVLADCVADQANWYLECHL 180
+HIWKELEK DAV PEVYLNALGLL+R+ VR LD F +RLK LA + +QANWYLE HL
Sbjct: 257 HHIWKELEKDDAVPPEVYLNALGLLIRLDVRDALDGFEDRLKNLAVRLTNQANWYLEWHL 316
Query: 181 DLLILWALANTGEVSKAEDLLKGLKSRHSKMIKKKQELMQTGVQVSSDI 229
D+LI+WALA GE S+A LL+GLK R SK KKKQ++MQ G+Q+ +
Sbjct: 317 DILIVWALAKVGETSRAHKLLEGLKFRLSKKNKKKQQVMQKGIQLGEAV 365
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|21537367|gb|AAM61708.1| unknown [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 308 bits (790), Expect = 9e-82, Method: Compositional matrix adjust.
Identities = 148/229 (64%), Positives = 179/229 (78%)
Query: 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQH 60
MG+PD ++ QVLP NQ+E +I G+LAF LLELG+M +A A++KG +INK D W+ H
Sbjct: 137 MGQPDPFLGLVQQVLPANQEESYIHGLLAFPLLELGRMEEAAAASRKGYEINKEDAWAHH 196
Query: 61 ALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYD 120
LCHVLQH+C FKEAV+FME + TW SCSSFMYTHNW HVALCYLEG SPM KV EIYD
Sbjct: 197 CLCHVLQHECRFKEAVEFMEALAGTWPSCSSFMYTHNWRHVALCYLEGGSPMSKVEEIYD 256
Query: 121 NHIWKELEKPDAVHPEVYLNALGLLLRVYVRGELDVFGNRLKVLADCVADQANWYLECHL 180
+HIWKELEK DAV PEVYLNALGLL+R+ VR LD F +RLK LA + +QANWYLE HL
Sbjct: 257 HHIWKELEKDDAVPPEVYLNALGLLIRLDVRDALDGFEDRLKNLAVRLTNQANWYLEWHL 316
Query: 181 DLLILWALANTGEVSKAEDLLKGLKSRHSKMIKKKQELMQTGVQVSSDI 229
D+LI+WALA GE S+A +LL+GLK R SK KKKQ++MQ G+Q+ +
Sbjct: 317 DILIVWALAKVGETSRAHELLEGLKFRLSKKNKKKQQVMQKGIQLGEAV 365
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449434849|ref|XP_004135208.1| PREDICTED: tetratricopeptide repeat protein 38-like [Cucumis sativus] gi|449478487|ref|XP_004155331.1| PREDICTED: tetratricopeptide repeat protein 38-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 307 bits (786), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 144/223 (64%), Positives = 176/223 (78%)
Query: 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQH 60
+G DL ++ QVLP NQ+E FI+G+LAF LLELG M +AE+AA++GL INK D W+QH
Sbjct: 137 LGSADLSLALVQQVLPQNQEEGFIYGMLAFPLLELGCMEEAEKAARRGLDINKKDGWAQH 196
Query: 61 ALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYD 120
ALCHVLQ+ C FKEAV+FME CS +W C SFM THNWWHVALCYLE +SP+ K+LEIYD
Sbjct: 197 ALCHVLQYRCHFKEAVEFMETCSPSWHDCVSFMVTHNWWHVALCYLEANSPLSKILEIYD 256
Query: 121 NHIWKELEKPDAVHPEVYLNALGLLLRVYVRGELDVFGNRLKVLADCVADQANWYLECHL 180
N+IWKELEKPDA+ PEVYLNALGL+LR++VRGE D RLK+LA+ + D+ANW+LE H
Sbjct: 257 NYIWKELEKPDAIGPEVYLNALGLMLRLFVRGEYDPCEGRLKILANVLTDKANWHLEWHF 316
Query: 181 DLLILWALANTGEVSKAEDLLKGLKSRHSKMIKKKQELMQTGV 223
D+L LWALA GE+ A++LL LKSR SKM KK+E MQ V
Sbjct: 317 DILTLWALAKAGEIFAADELLGSLKSRLSKMTAKKREKMQRRV 359
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356497832|ref|XP_003517761.1| PREDICTED: tetratricopeptide repeat protein 38-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 305 bits (781), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 148/226 (65%), Positives = 192/226 (84%)
Query: 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQH 60
MG P L +I Q+LP+N+ E++I+G+LAF LLELG+M +AEEAAK+G +INK DCWSQH
Sbjct: 137 MGLPGLSLSLIQQILPHNEGENYIYGMLAFPLLELGRMEEAEEAAKRGFEINKQDCWSQH 196
Query: 61 ALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYD 120
ALCHVLQ+ CCF+EAV+FMEECSS+W S SSFM THNWWHVALCYLEG++P ++VLEIYD
Sbjct: 197 ALCHVLQYKCCFREAVKFMEECSSSWGSSSSFMLTHNWWHVALCYLEGNAPRQRVLEIYD 256
Query: 121 NHIWKELEKPDAVHPEVYLNALGLLLRVYVRGELDVFGNRLKVLADCVADQANWYLECHL 180
N+IWKELE+ D++ +VYLNA LLL++YVRGELD+ G+RLK+L++C+ +Q NWY+E H
Sbjct: 257 NYIWKELERNDSMSADVYLNAAALLLQLYVRGELDIVGDRLKILSECLTNQENWYMEWHF 316
Query: 181 DLLILWALANTGEVSKAEDLLKGLKSRHSKMIKKKQELMQTGVQVS 226
D+LI+W LA TGE+SKAEDLLKGLK+R +M KKKQ+ MQ G+ ++
Sbjct: 317 DVLIVWTLAKTGEISKAEDLLKGLKNRLLRMTKKKQQRMQRGMMLA 362
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 235 | ||||||
| TAIR|locus:2205809 | 468 | AT1G27150 [Arabidopsis thalian | 0.974 | 0.489 | 0.624 | 3.5e-75 | |
| TAIR|locus:2205764 | 483 | AT1G27110 "AT1G27110" [Arabido | 0.974 | 0.474 | 0.504 | 2.2e-59 | |
| UNIPROTKB|Q0C3E4 | 438 | HNE_1027 "Putative uncharacter | 0.791 | 0.424 | 0.316 | 4e-16 | |
| WB|WBGene00013216 | 467 | Y54G11A.7 [Caenorhabditis eleg | 0.812 | 0.408 | 0.285 | 1.2e-13 | |
| MGI|MGI:2146198 | 465 | Ttc38 "tetratricopeptide repea | 0.774 | 0.391 | 0.251 | 1e-09 | |
| UNIPROTKB|Q5LPG1 | 456 | SPO2887 "Uncharacterized prote | 0.804 | 0.414 | 0.292 | 5.7e-09 | |
| TIGR_CMR|SPO_2887 | 456 | SPO_2887 "conserved hypothetic | 0.804 | 0.414 | 0.292 | 5.7e-09 | |
| ZFIN|ZDB-GENE-050522-318 | 466 | ttc38 "tetratricopeptide repea | 0.880 | 0.444 | 0.241 | 1.5e-08 |
| TAIR|locus:2205809 AT1G27150 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 758 (271.9 bits), Expect = 3.5e-75, P = 3.5e-75
Identities = 143/229 (62%), Positives = 173/229 (75%)
Query: 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQH 60
MG+PD ++ QVLP NQ+E +I G+LAF LLELG+M +A A++KG +INK D W+ H
Sbjct: 137 MGQPDPFLGLVQQVLPANQEESYIHGLLAFPLLELGRMEEAAAASRKGYEINKEDAWAHH 196
Query: 61 ALCHVLQHDCCFKEAVQFMEEXXXXXXXXXXFMYTHNWWHVALCYLEGHSPMRKVLEIYD 120
LCHVLQH+C FKEAV+FME FMYTHNWWHVALCYLEG SPM KV EIYD
Sbjct: 197 CLCHVLQHECRFKEAVEFMEALAGTWPSCSSFMYTHNWWHVALCYLEGGSPMSKVEEIYD 256
Query: 121 NHIWKELEKPDAVHPEVYLNALGLLLRVYVRGELDVFGNRLKVLADCVADQANWYLECHL 180
+HIWKELEK DAV PEVYLNALGLL+R+ VR LD F +RLK LA + +QANWYLE HL
Sbjct: 257 HHIWKELEKDDAVPPEVYLNALGLLIRLDVRDALDGFEDRLKNLAVRLTNQANWYLEWHL 316
Query: 181 DLLILWALANTGEVSKAEDLLKGLKSRHSKMIKKKQELMQTGVQVSSDI 229
D+LI+WALA GE S+A +LL+GLK R SK KKKQ++MQ G+Q+ +
Sbjct: 317 DILIVWALAKVGETSRAHELLEGLKFRLSKKNKKKQQVMQKGIQLGEAV 365
|
|
| TAIR|locus:2205764 AT1G27110 "AT1G27110" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 609 (219.4 bits), Expect = 2.2e-59, P = 2.2e-59
Identities = 116/230 (50%), Positives = 161/230 (70%)
Query: 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQH 60
MGR DL + ++LP N+ + ++ G+LAF L+ELG + +AEEAA+KG +IN++D W+ H
Sbjct: 148 MGRHDLSLPLFRKILPQNEGQVYVNGMLAFCLIELGHLREAEEAARKGCEINENDSWAHH 207
Query: 61 ALCHVLQHDCCFKEAVQFMEEXXXXXXXXXXFMYTHNWWHVALCYLEGHSPMRKVLEIYD 120
ALCHVLQ +C FKEAV+FMEE ++HNWWHVA+CYLEG S + KV E+YD
Sbjct: 208 ALCHVLQTECRFKEAVKFMEEHSDSWDSCSSLRFSHNWWHVAVCYLEGGSHISKVEEVYD 267
Query: 121 NHIWKELEKPDAVHPEVYLNALGLLLRVYVRGELDV-FGNRLKVLADCVADQANWYLECH 179
+ +WKELEK DAV +VY +ALGLLLR+ RG+LD F +RL+ LAD + D+A WY +
Sbjct: 268 HQMWKELEKDDAVARDVYTDALGLLLRLDTRGKLDDGFQDRLEKLADSLTDKAMWYQDWL 327
Query: 180 LDLLILWALANTGEVSKAEDLLKGLKSRHSKMIKKKQELMQTGVQVSSDI 229
D+ +WAL+ + S A +LL+GLKSR S M KKQ+LMQ + ++ +
Sbjct: 328 FDITTIWALSKVEKTSLAHELLEGLKSRTSAMNPKKQKLMQKAILLAEAV 377
|
|
| UNIPROTKB|Q0C3E4 HNE_1027 "Putative uncharacterized protein" [Hyphomonas neptunium ATCC 15444 (taxid:228405)] | Back alignment and assigned GO terms |
|---|
Score = 207 (77.9 bits), Expect = 4.0e-16, P = 4.0e-16
Identities = 62/196 (31%), Positives = 95/196 (48%)
Query: 9 DIIHQVLP-YNQ--QEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHV 65
D I + LP +++ + F+ G+LAF L E G AE A ++ L+ D W+ HA+ HV
Sbjct: 144 DRIARALPAWDKLPERSFLLGMLAFGLEEAGDYPRAEAAGREALEREPTDSWAHHAVVHV 203
Query: 66 LQHDCCFKEAVQFMEEXXXXXXXXXXFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 125
L+ +E F+ F+ HNWWH+ALC+LE L++YD+ I +
Sbjct: 204 LEMQGRAEEGRDFIRRRREHWAQPDSFLKIHNWWHLALCHLE-LGEFEAALQLYDDEI-R 261
Query: 126 ELEKPDAVHPEVYLNALGLLLRVYVRGELDVFGNRLKVLADCVADQANWYLECHLDLLIL 185
E A++ +A LL R++V G +D+ G R + LAD A+ D+
Sbjct: 262 AGESGIAMN---LADAAALLWRLHVIG-VDL-GERWEELADAWTQHADGRCYPFNDMHAA 316
Query: 186 WALANTGEVSKAEDLL 201
A G + A DLL
Sbjct: 317 MAFIGAGRRNDALDLL 332
|
|
| WB|WBGene00013216 Y54G11A.7 [Caenorhabditis elegans (taxid:6239)] | Back alignment and assigned GO terms |
|---|
Score = 185 (70.2 bits), Expect = 1.2e-13, P = 1.2e-13
Identities = 60/210 (28%), Positives = 102/210 (48%)
Query: 23 FIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEEX 82
++ G+ AF L E G DAE A + L++N+ DCW+ HA HVL+ + KE +FM +
Sbjct: 181 YLHGMYAFGLEECGIYDDAETQADRALQLNRFDCWASHAKAHVLEMNGRHKEGKEFMYKT 240
Query: 83 XXXXXXXXXFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNAL 142
+ +HN+WH AL ++E ++ L I+D I K +++ V +A
Sbjct: 241 EDDWRQGW-MLASHNYWHTALFHIE-YAEYESALGIFDREIANRFNKTNSLLDMV--DAS 296
Query: 143 GLLLRVYVRGELDVFGNR---LKVLADCVADQANWYLECHLDLLILWALANTGEVSKAED 199
LL R+ + G ++V +R ++ L+ + + + + + HL L I + ED
Sbjct: 297 SLLWRLELEG-VNVGRDRWRKIEHLSKFIDNHSIVFNDVHLGLAIY----------RQED 345
Query: 200 LLKGLKSRHSKMIKKKQELMQTGVQVSSDI 229
L K R+S + K L + Q+S I
Sbjct: 346 LETEKKLRNS-LEKYSSLLSEDNAQISKTI 374
|
|
| MGI|MGI:2146198 Ttc38 "tetratricopeptide repeat domain 38" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 158 (60.7 bits), Expect = 1.0e-09, P = 1.0e-09
Identities = 48/191 (25%), Positives = 81/191 (42%)
Query: 15 LPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKE 74
+P N ++ GI +F L+E A++ AK+ L I D WS H + HV + K+
Sbjct: 172 IPLNS---YVKGIYSFGLMETNFYDQAQKLAKEALSIEPTDAWSVHTVAHVHEMRAEIKD 228
Query: 75 AVQFMEEXXXXXXXXXXFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVH 134
++FM++ + HN+WH AL YL L IYD+HI L+ +
Sbjct: 229 GLEFMQQSEGHWKDSD-MLACHNYWHWAL-YLIEKGDYEAALTIYDSHILPSLQASGTML 286
Query: 135 PEVYLNALGLLLRVYVRGELDVFGNRLKVLADCVADQANWYLECHLDLLILWALANTGEV 194
V ++ +L R+ + G G R + + ++ D L A ++
Sbjct: 287 DVV--DSCSMLYRLQMEGV--PLGQRWQTVLPVTQKHTRDHILLFNDAHFLMASLGARDL 342
Query: 195 SKAEDLLKGLK 205
+LL L+
Sbjct: 343 QTTRELLTTLQ 353
|
|
| UNIPROTKB|Q5LPG1 SPO2887 "Uncharacterized protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)] | Back alignment and assigned GO terms |
|---|
Score = 153 (58.9 bits), Expect = 5.7e-09, P = 5.7e-09
Identities = 60/205 (29%), Positives = 96/205 (46%)
Query: 16 PYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEA 75
P + ++ G AF+L E G AE A ++ L + D W HA+ HV + +
Sbjct: 157 PDHAGRGYLLGCHAFALEETGAYDKAEIAGRQALWMVSDDAWGLHAVAHVHEMKGQSELG 216
Query: 76 VQFMEEXXXXXXXXXXFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHP 135
+ ++ F Y H WWH AL +L+ + +V ++YD+ I K+ K D +
Sbjct: 217 LDWLAGREAAWSHCNNFRY-HVWWHKALMHLD-QGQIDQVFDLYDSAIRKD--KTDD-YR 271
Query: 136 EVYLNALGLLLRVYVRGELDVFGNRLKVLADCVADQANWYLECHLDLLILWALANTGEVS 195
++ NA LL R+ + G ++V G+R + LAD A + DL L AL TG+
Sbjct: 272 DIS-NATSLLSRLELEG-VNV-GDRWEELADLSAARTEDGCLIFADLHYLLAL--TGDTR 326
Query: 196 KAEDLLKGLKSRHSKMIKKKQELMQ 220
ED + SR IK+ ++ Q
Sbjct: 327 --EDAI----SRMLHRIKRDADMAQ 345
|
|
| TIGR_CMR|SPO_2887 SPO_2887 "conserved hypothetical protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)] | Back alignment and assigned GO terms |
|---|
Score = 153 (58.9 bits), Expect = 5.7e-09, P = 5.7e-09
Identities = 60/205 (29%), Positives = 96/205 (46%)
Query: 16 PYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEA 75
P + ++ G AF+L E G AE A ++ L + D W HA+ HV + +
Sbjct: 157 PDHAGRGYLLGCHAFALEETGAYDKAEIAGRQALWMVSDDAWGLHAVAHVHEMKGQSELG 216
Query: 76 VQFMEEXXXXXXXXXXFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHP 135
+ ++ F Y H WWH AL +L+ + +V ++YD+ I K+ K D +
Sbjct: 217 LDWLAGREAAWSHCNNFRY-HVWWHKALMHLD-QGQIDQVFDLYDSAIRKD--KTDD-YR 271
Query: 136 EVYLNALGLLLRVYVRGELDVFGNRLKVLADCVADQANWYLECHLDLLILWALANTGEVS 195
++ NA LL R+ + G ++V G+R + LAD A + DL L AL TG+
Sbjct: 272 DIS-NATSLLSRLELEG-VNV-GDRWEELADLSAARTEDGCLIFADLHYLLAL--TGDTR 326
Query: 196 KAEDLLKGLKSRHSKMIKKKQELMQ 220
ED + SR IK+ ++ Q
Sbjct: 327 --EDAI----SRMLHRIKRDADMAQ 345
|
|
| ZFIN|ZDB-GENE-050522-318 ttc38 "tetratricopeptide repeat domain 38" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 150 (57.9 bits), Expect = 1.5e-08, P = 1.5e-08
Identities = 52/215 (24%), Positives = 92/215 (42%)
Query: 16 PYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEA 75
P+ +I G+ +F LLE +AE+ AK+ L + D WS HA+ HV + +
Sbjct: 173 PHMPLYSYIKGMYSFGLLETRLYDEAEKMAKEALSLTPEDGWSVHAVAHVHEMKAEVDKG 232
Query: 76 VQFMEEXXXXXXXXXXFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHP 135
+ FM + HN+WH AL ++E + L+I+D + + K A+
Sbjct: 233 LNFMASTEKNWMVCD-MLACHNYWHWALYHIEKGN-YEAALKIFDEQVSQRCVKSGAMLD 290
Query: 136 EVYLNALGLLLRVYVRGELDVFGNRLKVLADCVADQANWYLECHLDLLILWALANTGEVS 195
V ++ LL R+ + G + V G R + L + + DL L + +
Sbjct: 291 IV--DSCSLLYRLELEG-VSV-GERYRELLQVTQPHSEDHTLLFNDLHFLMVSLGSKDTG 346
Query: 196 KAEDLLKGLKSRHSKMIKKKQELMQTGVQVSSDIC 230
+ LL+ L+ + +Q +Q +V +C
Sbjct: 347 TTQRLLESLQELAKDPAENRQ--LQIAERVGLPMC 379
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.325 0.139 0.451 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 235 225 0.00077 113 3 11 22 0.47 32
32 0.41 36
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 8
No. of states in DFA: 608 (65 KB)
Total size of DFA: 213 KB (2117 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 19.98u 0.08s 20.06t Elapsed: 00:00:00
Total cpu time: 19.98u 0.08s 20.06t Elapsed: 00:00:00
Start: Fri May 10 23:31:12 2013 End: Fri May 10 23:31:12 2013
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 235 | |||
| cd05804 | 355 | cd05804, StaR_like, StaR_like; a well-conserved pr | 3e-70 |
| >gnl|CDD|100115 cd05804, StaR_like, StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Score = 218 bits (558), Expect = 3e-70
Identities = 82/225 (36%), Positives = 107/225 (47%), Gaps = 6/225 (2%)
Query: 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQH 60
G D ++ P N ++ G+LAF L E GQ AEEAA++ L++N D W+ H
Sbjct: 93 SGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVH 152
Query: 61 ALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYD 120
A+ HVL+ FKE + FME TW CSS + HNWWH+AL YLE L IYD
Sbjct: 153 AVAHVLEMQGRFKEGIAFMESWRDTW-DCSSMLRGHNWWHLALFYLERGDY-EAALAIYD 210
Query: 121 NHIWKELEKPDAVHPEVYLNALGLLLRVYVRGELDVFGNRLKVLADCVADQANWYLECHL 180
HI E A L+A LL R+ + G G+R + LAD A +
Sbjct: 211 THIAPSAESDPA---LDLLDAASLLWRLELAGH-VDVGDRWEDLADYAAWHFPDHGLAFN 266
Query: 181 DLLILWALANTGEVSKAEDLLKGLKSRHSKMIKKKQELMQTGVQV 225
DL ALA G+ + LL LK R S KQ G+ +
Sbjct: 267 DLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPL 311
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. Length = 355 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 235 | |||
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 100.0 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.96 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.45 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 99.44 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.39 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.39 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 99.34 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 99.29 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.29 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.26 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 99.25 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.24 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.23 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.23 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.21 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 99.17 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.13 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.12 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.12 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.11 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 99.09 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.05 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 99.02 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.02 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.02 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 98.99 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 98.97 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 98.97 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 98.97 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 98.96 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 98.95 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 98.94 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 98.92 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.91 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.91 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 98.89 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.89 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.88 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 98.87 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 98.85 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.84 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.81 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.81 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 98.8 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.79 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 98.79 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.79 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 98.77 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 98.77 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 98.77 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 98.76 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 98.69 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 98.68 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.67 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.65 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 98.65 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 98.65 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 98.63 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 98.63 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 98.63 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 98.63 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 98.61 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 98.61 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 98.56 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 98.54 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 98.53 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 98.52 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 98.51 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 98.49 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 98.48 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 98.44 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 98.41 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 98.37 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 98.33 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 98.32 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 98.27 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 98.27 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 98.24 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 98.24 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.23 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 98.22 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 98.21 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 98.2 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 98.19 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 98.18 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 98.18 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 98.16 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 98.15 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 98.14 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 98.13 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.05 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 98.04 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.03 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 98.03 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 98.01 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 98.01 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 98.0 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 98.0 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 97.99 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 97.97 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 97.94 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 97.94 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 97.88 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 97.86 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 97.83 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 97.81 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.78 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 97.77 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 97.76 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 97.75 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 97.74 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 97.72 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 97.71 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 97.68 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 97.67 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 97.67 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 97.66 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 97.59 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 97.59 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 97.59 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 97.57 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 97.55 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 97.55 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 97.54 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 97.5 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.45 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 97.44 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 97.43 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 97.4 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 97.39 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.38 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 97.38 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 97.33 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 97.32 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 97.31 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 97.3 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 97.27 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 97.25 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 97.23 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 97.21 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 97.19 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 97.18 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 97.12 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.11 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 97.09 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 97.06 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 97.05 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 96.98 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 96.93 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 96.92 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 96.89 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 96.86 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 96.84 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 96.83 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 96.78 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 96.75 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 96.68 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 96.67 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 96.65 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 96.65 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 96.62 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 96.61 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 96.57 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 96.5 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 96.47 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 96.47 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 96.45 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 96.44 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 96.42 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 96.36 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 96.35 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 96.29 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 96.19 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 96.18 | |
| KOG4642 | 284 | consensus Chaperone-dependent E3 ubiquitin protein | 96.15 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 96.13 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 96.1 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 96.09 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 95.89 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 95.85 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 95.82 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 95.68 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 95.64 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 95.63 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 95.61 | |
| smart00028 | 34 | TPR Tetratricopeptide repeats. Repeats present in | 95.6 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 95.57 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 95.52 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 95.48 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 95.41 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 95.36 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 95.36 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 95.34 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 95.21 | |
| PF14561 | 90 | TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S | 95.1 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 95.02 | |
| PRK10941 | 269 | hypothetical protein; Provisional | 94.93 | |
| PRK10941 | 269 | hypothetical protein; Provisional | 94.66 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 94.64 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 94.64 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 94.55 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 94.53 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 94.12 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 94.09 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 94.05 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 93.98 | |
| KOG1308 | 377 | consensus Hsp70-interacting protein Hip/Transient | 93.96 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 93.82 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 93.75 | |
| PF12968 | 144 | DUF3856: Domain of Unknown Function (DUF3856); Int | 93.68 | |
| COG2912 | 269 | Uncharacterized conserved protein [Function unknow | 93.66 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 93.45 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 93.3 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 93.23 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 93.15 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 92.74 | |
| PF14561 | 90 | TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S | 92.71 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 92.7 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 92.69 | |
| PF12968 | 144 | DUF3856: Domain of Unknown Function (DUF3856); Int | 92.55 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 92.54 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 92.43 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 92.12 | |
| KOG0376 | 476 | consensus Serine-threonine phosphatase 2A, catalyt | 91.91 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 91.89 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 91.81 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 91.48 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 91.31 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 91.23 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 91.19 | |
| KOG4642 | 284 | consensus Chaperone-dependent E3 ubiquitin protein | 91.11 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 90.96 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 90.86 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 90.79 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 90.75 | |
| KOG3824 | 472 | consensus Huntingtin interacting protein HYPE [Gen | 90.66 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 90.44 | |
| smart00028 | 34 | TPR Tetratricopeptide repeats. Repeats present in | 90.41 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 90.2 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 89.88 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 89.75 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 89.55 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 89.37 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 89.34 | |
| TIGR03504 | 44 | FimV_Cterm FimV C-terminal domain. This protein is | 89.26 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 89.01 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 88.54 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 88.0 | |
| COG2912 | 269 | Uncharacterized conserved protein [Function unknow | 87.57 | |
| KOG0530 | 318 | consensus Protein farnesyltransferase, alpha subun | 87.14 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 87.08 | |
| PF12862 | 94 | Apc5: Anaphase-promoting complex subunit 5 | 87.08 | |
| PF04910 | 360 | Tcf25: Transcriptional repressor TCF25; InterPro: | 85.84 | |
| KOG0551 | 390 | consensus Hsp90 co-chaperone CNS1 (contains TPR re | 85.64 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 85.56 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 83.75 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 83.39 | |
| KOG4507 | 886 | consensus Uncharacterized conserved protein, conta | 83.29 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 83.01 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 82.81 | |
| KOG2300 | 629 | consensus Uncharacterized conserved protein [Funct | 82.8 | |
| PF12862 | 94 | Apc5: Anaphase-promoting complex subunit 5 | 82.7 | |
| KOG4507 | 886 | consensus Uncharacterized conserved protein, conta | 82.34 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 81.99 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 81.85 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 81.44 | |
| COG4941 | 415 | Predicted RNA polymerase sigma factor containing a | 81.02 | |
| PF07720 | 36 | TPR_3: Tetratricopeptide repeat; InterPro: IPR0117 | 80.09 |
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-41 Score=303.28 Aligned_cols=214 Identities=34% Similarity=0.554 Sum_probs=190.1
Q ss_pred CCChhhHHHHHHhhcCCC----CCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 026637 1 MGRPDLCFDIIHQVLPYN----QQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAV 76 (235)
Q Consensus 1 ~G~~~~al~~~~ral~~~----p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi 76 (235)
+|+..++++.++|++|.| |.++|++||+||+|+|+|.|++||+.++||+++||+|+||+|+++||++|.||++||.
T Consensus 150 ~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~ 229 (491)
T KOG2610|consen 150 NGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGK 229 (491)
T ss_pred ccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHH
Confidence 689999999999999984 4568999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHchhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchhhhcCCCCCchHhHhHHHHHHHHHHhcCcccc
Q 026637 77 QFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNALGLLLRVYVRGELDV 156 (235)
Q Consensus 77 ~~l~~a~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~~~~~~~~~~~~~~~da~sLL~Rl~l~G~~~~ 156 (235)
+||.+.+..|.. +.++.+|||||.|+||+|.+ .|+.|++|||+.|+++++| .|++|++|||++.|+++
T Consensus 230 eFM~~ted~Wr~-s~mlasHNyWH~Al~~iE~a-eye~aleIyD~ei~k~l~k---------~Da~a~~~~ld~dgv~~- 297 (491)
T KOG2610|consen 230 EFMYKTEDDWRQ-SWMLASHNYWHTALFHIEGA-EYEKALEIYDREIWKRLEK---------DDAVARDVYLDLDGVDL- 297 (491)
T ss_pred HHHHhcccchhh-hhHHHhhhhHHHHHhhhccc-chhHHHHHHHHHHHHHhhc---------cchhhhhhhhhhhhHHh-
Confidence 999999999995 78999999999999999986 9999999999999998644 59999999999999985
Q ss_pred cccchH---HHHHHHHhhhcchhcchhhHHHHHHHhcCCCchHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHhh
Q 026637 157 FGNRLK---VLADCVADQANWYLECHLDLLILWALANTGEVSKAEDLLKGLKSRHSKMIKKKQELMQTGVQVSSDI 229 (235)
Q Consensus 157 ~g~rw~---~la~~~~~~~~~~~~~F~d~H~~~al~~ag~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 229 (235)
-.++|. .|++.+..+..++..+.-|+-..|++....+...+.+|++ ++++-+.++ .|-.++++|.|.+.+
T Consensus 298 ~~d~~~kld~la~~l~d~a~~~~d~~~~itt~~~~~~~~~~~l~~~ll~-~~~~ls~~n--~q~~~t~gi~l~~~~ 370 (491)
T KOG2610|consen 298 RSDLWRKLDKLADSLTDKAMWYQDWLFDITTIWALSKVEKTSLAHELLE-LKSLLSEDN--AQISKTKGIPLYDGM 370 (491)
T ss_pred HHHHHHHHHhhhhhhcchhhhhhhhhhhhhHHhhhhhhhhhhhHHHHHH-HHHHhhhhh--hhhhhhhccchHHHh
Confidence 357777 5566666666666666666777999999999999999999 888877643 466799999998875
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.1e-27 Score=212.19 Aligned_cols=224 Identities=34% Similarity=0.506 Sum_probs=187.8
Q ss_pred ChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc
Q 026637 3 RPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEEC 82 (235)
Q Consensus 3 ~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~~a 82 (235)
+...+...++...+..|+++++++++|+++.++|++++|++.++++++++|+++++++.++++++++|++++|+.+++++
T Consensus 95 ~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~ 174 (355)
T cd05804 95 MRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESW 174 (355)
T ss_pred CchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence 33444444445557889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchhhhcCCCCCchHhHhHHHHHHHHHHhcCcccccccchH
Q 026637 83 SSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNALGLLLRVYVRGELDVFGNRLK 162 (235)
Q Consensus 83 ~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~~~~~~~~~~~~~~~da~sLL~Rl~l~G~~~~~g~rw~ 162 (235)
.+.+|.. +.+..|+|||+|.+++..| ++++|+++|++.+.+. ..+....+++|+++++||+.+.|.. .+.+||+
T Consensus 175 l~~~~~~-~~~~~~~~~~la~~~~~~G-~~~~A~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~g~~-~~~~~w~ 248 (355)
T cd05804 175 RDTWDCS-SMLRGHNWWHLALFYLERG-DYEAALAIYDTHIAPS---AESDPALDLLDAASLLWRLELAGHV-DVGDRWE 248 (355)
T ss_pred hhccCCC-cchhHHHHHHHHHHHHHCC-CHHHHHHHHHHHhccc---cCCChHHHHhhHHHHHHHHHhcCCC-ChHHHHH
Confidence 9999874 3457899999999999998 9999999999987653 1123455556899999999999964 4689999
Q ss_pred HHHHHHHhhhcchhcchhhHHHHHHHhcCCCchHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHhhhhh
Q 026637 163 VLADCVADQANWYLECHLDLLILWALANTGEVSKAEDLLKGLKSRHSKMIKKKQELMQTGVQVSSDICLI 232 (235)
Q Consensus 163 ~la~~~~~~~~~~~~~F~d~H~~~al~~ag~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 232 (235)
.+++...+..+++...|+++|.++++...|+.+.+.++|+.++..++.++..........+.+..++..+
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~ 318 (355)
T cd05804 249 DLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAF 318 (355)
T ss_pred HHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHH
Confidence 9999887765668899999999999999999999999999999998775323333455666677776654
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.5e-11 Score=119.46 Aligned_cols=118 Identities=8% Similarity=-0.055 Sum_probs=105.0
Q ss_pred CChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 026637 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEE 81 (235)
Q Consensus 2 G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~~ 81 (235)
|+.+++...+++++..+|+++.++..+|.++...|++++|++.+++|++++|+++.++..+|.++..+|++++|+.++++
T Consensus 318 ~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~ 397 (553)
T PRK12370 318 NAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINE 397 (553)
T ss_pred hHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026637 82 CSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 125 (235)
Q Consensus 82 a~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~ 125 (235)
+.+..|..+. .++ +++..++..| ++++|++.+++.+..
T Consensus 398 Al~l~P~~~~---~~~--~~~~~~~~~g-~~eeA~~~~~~~l~~ 435 (553)
T PRK12370 398 CLKLDPTRAA---AGI--TKLWITYYHT-GIDDAIRLGDELRSQ 435 (553)
T ss_pred HHhcCCCChh---hHH--HHHHHHHhcc-CHHHHHHHHHHHHHh
Confidence 9999988541 222 2444555677 899999999997764
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=2.1e-12 Score=104.67 Aligned_cols=110 Identities=14% Similarity=0.051 Sum_probs=99.2
Q ss_pred HHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhhc
Q 026637 8 FDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWS 87 (235)
Q Consensus 8 l~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~~a~~~w~ 87 (235)
.+.+++++..+|++. ..+|+++...|++++|.+.+++++.++|+++.++..+|.++...|++++|+.+++++....|
T Consensus 13 ~~~~~~al~~~p~~~---~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p 89 (144)
T PRK15359 13 EDILKQLLSVDPETV---YASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDA 89 (144)
T ss_pred HHHHHHHHHcCHHHH---HHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 357889999999873 35789999999999999999999999999999999999999999999999999999999998
Q ss_pred cCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchhh
Q 026637 88 SCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE 126 (235)
Q Consensus 88 ~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~~ 126 (235)
..+ ..+.++|.++...| ++++|++.|++.|...
T Consensus 90 ~~~-----~a~~~lg~~l~~~g-~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 90 SHP-----EPVYQTGVCLKMMG-EPGLAREAFQTAIKMS 122 (144)
T ss_pred CCc-----HHHHHHHHHHHHcC-CHHHHHHHHHHHHHhC
Confidence 865 34556999999998 9999999999999873
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=2.1e-11 Score=118.43 Aligned_cols=117 Identities=9% Similarity=0.058 Sum_probs=104.4
Q ss_pred ChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHh---------CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHH
Q 026637 3 RPDLCFDIIHQVLPYNQQEDFIFGILAFSLLEL---------GQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFK 73 (235)
Q Consensus 3 ~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~---------g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~ 73 (235)
+.++++..+++++..+|+++.++..+|.++... +++++|++.+++|++++|+++.++..+|.++..+|+++
T Consensus 276 ~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~ 355 (553)
T PRK12370 276 SLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYI 355 (553)
T ss_pred HHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHH
Confidence 356899999999999999999999998866533 34899999999999999999999999999999999999
Q ss_pred HHHHHHHHchhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026637 74 EAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 125 (235)
Q Consensus 74 egi~~l~~a~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~ 125 (235)
+|+..++++....|+++ ..|+ ++|.+++..| ++++|+..|++.+..
T Consensus 356 ~A~~~~~~Al~l~P~~~---~a~~--~lg~~l~~~G-~~~eAi~~~~~Al~l 401 (553)
T PRK12370 356 VGSLLFKQANLLSPISA---DIKY--YYGWNLFMAG-QLEEALQTINECLKL 401 (553)
T ss_pred HHHHHHHHHHHhCCCCH---HHHH--HHHHHHHHCC-CHHHHHHHHHHHHhc
Confidence 99999999999998854 3444 5899999998 999999999999887
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.39 E-value=6.1e-11 Score=116.04 Aligned_cols=209 Identities=12% Similarity=0.091 Sum_probs=130.1
Q ss_pred CCChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 026637 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME 80 (235)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~ 80 (235)
.|+.++++..+++++..+|+++.++..+|..+...|++++|+..++++++++|++..++..+|.++..+|++++++..++
T Consensus 378 ~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~ 457 (615)
T TIGR00990 378 LGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFR 457 (615)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 36777777777777777777777777777777778888888888888888888888888888888888888888888888
Q ss_pred HchhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchhhhcCCCCCch---HhHhHHHHHHHHHHhcCccccc
Q 026637 81 ECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHP---EVYLNALGLLLRVYVRGELDVF 157 (235)
Q Consensus 81 ~a~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~~~~~~~~~~~---~~~~da~sLL~Rl~l~G~~~~~ 157 (235)
++....|..+ ..+..++..+...| ++++|++.|++.+... +...... ..+++.+..+++.
T Consensus 458 ~al~~~P~~~-----~~~~~lg~~~~~~g-~~~~A~~~~~~Al~l~--p~~~~~~~~~~~l~~~a~~~~~~--------- 520 (615)
T TIGR00990 458 RCKKNFPEAP-----DVYNYYGELLLDQN-KFDEAIEKFDTAIELE--KETKPMYMNVLPLINKALALFQW--------- 520 (615)
T ss_pred HHHHhCCCCh-----HHHHHHHHHHHHcc-CHHHHHHHHHHHHhcC--CccccccccHHHHHHHHHHHHHH---------
Confidence 7777776643 23334777777776 7888888888877653 1110000 0112222222220
Q ss_pred ccchHHHHHHHHhhh-cchhcchhhHHHHHHHhcCCCchHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHhhhh
Q 026637 158 GNRLKVLADCVADQA-NWYLECHLDLLILWALANTGEVSKAEDLLKGLKSRHSKMIKKKQELMQTGVQVSSDICL 231 (235)
Q Consensus 158 g~rw~~la~~~~~~~-~~~~~~F~d~H~~~al~~ag~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 231 (235)
..+++.-...+..-. -++...-.-.+....+...|+.+.+-++++...+.+... ++ .+++...+++++.
T Consensus 521 ~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~-~e----~~~a~~~~~a~~~ 590 (615)
T TIGR00990 521 KQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTE-GE----LVQAISYAEATRT 590 (615)
T ss_pred hhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccH-HH----HHHHHHHHHHHHH
Confidence 112333222322210 111111223456778888999988888877766655331 22 5566666666654
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=5.2e-11 Score=101.65 Aligned_cols=119 Identities=12% Similarity=0.081 Sum_probs=107.6
Q ss_pred CChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH-HHcCC--HHHHHHH
Q 026637 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVL-QHDCC--FKEAVQF 78 (235)
Q Consensus 2 G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl-~~~Gr--~~egi~~ 78 (235)
++.+++...+++++..+|+++..+.++|..+...|++++|+..+++|++++|+++..+..+|.++ ...|+ .++++..
T Consensus 53 ~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~ 132 (198)
T PRK10370 53 QTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREM 132 (198)
T ss_pred hhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHH
Confidence 45678889999999999999999999999999999999999999999999999999999999996 56688 5999999
Q ss_pred HHHchhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchhh
Q 026637 79 MEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE 126 (235)
Q Consensus 79 l~~a~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~~ 126 (235)
++++....|+.+ ..+ ..+|..+++.| ++++|+..|++.+...
T Consensus 133 l~~al~~dP~~~---~al--~~LA~~~~~~g-~~~~Ai~~~~~aL~l~ 174 (198)
T PRK10370 133 IDKALALDANEV---TAL--MLLASDAFMQA-DYAQAIELWQKVLDLN 174 (198)
T ss_pred HHHHHHhCCCCh---hHH--HHHHHHHHHcC-CHHHHHHHHHHHHhhC
Confidence 999999998854 233 45999999998 9999999999998773
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=6.3e-11 Score=118.17 Aligned_cols=156 Identities=10% Similarity=-0.052 Sum_probs=129.1
Q ss_pred CCChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 026637 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME 80 (235)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~ 80 (235)
.|+.++++...++++++.|++..+...++-+|.+.+++++|...++++|+.+|+++.+++.+|.++...|+++||++.++
T Consensus 99 ~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~ 178 (694)
T PRK15179 99 AHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKSWDEIGQSEQADACFE 178 (694)
T ss_pred cCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcchHHHHHHHH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HchhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchhhhcCCCCCc----hHhHhHHHHHHHHHHhcCcccc
Q 026637 81 ECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVH----PEVYLNALGLLLRVYVRGELDV 156 (235)
Q Consensus 81 ~a~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~~~~~~~~~~----~~~~~da~sLL~Rl~l~G~~~~ 156 (235)
+.....|..+ ..+.+ +|..+.+.| +.++|...|++.|... .+++-- ..++---+.+|=||+.+|..++
T Consensus 179 ~~~~~~p~~~---~~~~~--~a~~l~~~G-~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (694)
T PRK15179 179 RLSRQHPEFE---NGYVG--WAQSLTRRG-ALWRARDVLQAGLDAI--GDGARKLTRRLVDLNADLAALRRLGVEGDGRD 250 (694)
T ss_pred HHHhcCCCcH---HHHHH--HHHHHHHcC-CHHHHHHHHHHHHHhh--CcchHHHHHHHHHHHHHHHHHHHcCcccccCC
Confidence 9998655432 33444 889999998 9999999999999885 344321 1122233578889998877554
Q ss_pred cccchHHH
Q 026637 157 FGNRLKVL 164 (235)
Q Consensus 157 ~g~rw~~l 164 (235)
+..|.-.+
T Consensus 251 ~~~~~~~~ 258 (694)
T PRK15179 251 VPVSILVL 258 (694)
T ss_pred CceeeeeH
Confidence 44444333
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=4.3e-11 Score=123.31 Aligned_cols=119 Identities=13% Similarity=0.048 Sum_probs=112.2
Q ss_pred CCChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 026637 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME 80 (235)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~ 80 (235)
+|+.++|+..+++++..+|+ +.++..+|.++.+.|++++|++..+++++++|+++.++.++|.++...|++++++..++
T Consensus 589 ~Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~ 667 (987)
T PRK09782 589 PGQPELALNDLTRSLNIAPS-ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLE 667 (987)
T ss_pred CCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 49999999999999999997 88999999999999999999999999999999999999999999999999999999999
Q ss_pred HchhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchhh
Q 026637 81 ECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE 126 (235)
Q Consensus 81 ~a~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~~ 126 (235)
++....|..+ ..++++|.++...| ++++|++.|++.+...
T Consensus 668 ~AL~l~P~~~-----~a~~nLA~al~~lG-d~~eA~~~l~~Al~l~ 707 (987)
T PRK09782 668 RAHKGLPDDP-----ALIRQLAYVNQRLD-DMAATQHYARLVIDDI 707 (987)
T ss_pred HHHHhCCCCH-----HHHHHHHHHHHHCC-CHHHHHHHHHHHHhcC
Confidence 9999998853 56778999999998 9999999999998773
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.26 E-value=6.9e-11 Score=102.99 Aligned_cols=121 Identities=15% Similarity=0.115 Sum_probs=109.5
Q ss_pred CChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 026637 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEE 81 (235)
Q Consensus 2 G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~~ 81 (235)
|+...+...+++||.++|++..++..+|+.++..|+.+-|.+.+|+||+++|+++..+.+-|.-+..+|++++|..++++
T Consensus 49 gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~ 128 (250)
T COG3063 49 GDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFER 128 (250)
T ss_pred CCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchhh
Q 026637 82 CSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE 126 (235)
Q Consensus 82 a~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~~ 126 (235)
+... |..+.. .--|-++++|.+..| +++.|.+.|.+.+...
T Consensus 129 Al~~-P~Y~~~--s~t~eN~G~Cal~~g-q~~~A~~~l~raL~~d 169 (250)
T COG3063 129 ALAD-PAYGEP--SDTLENLGLCALKAG-QFDQAEEYLKRALELD 169 (250)
T ss_pred HHhC-CCCCCc--chhhhhhHHHHhhcC-CchhHHHHHHHHHHhC
Confidence 9654 222211 235667999999998 8999999999999873
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=5.4e-11 Score=96.40 Aligned_cols=90 Identities=9% Similarity=-0.173 Sum_probs=87.2
Q ss_pred CCChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 026637 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME 80 (235)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~ 80 (235)
+|+.+++...+++++..+|.++.++..+|.++...|++++|+..+++|++++|+++.+++.+|.++...|++++|+..++
T Consensus 37 ~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~ 116 (144)
T PRK15359 37 EGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMGEPGLAREAFQ 116 (144)
T ss_pred cCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HchhhhccCC
Q 026637 81 ECSSTWSSCS 90 (235)
Q Consensus 81 ~a~~~w~~~~ 90 (235)
++...-|+.+
T Consensus 117 ~Al~~~p~~~ 126 (144)
T PRK15359 117 TAIKMSYADA 126 (144)
T ss_pred HHHHhCCCCh
Confidence 9999988854
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.5e-09 Score=89.12 Aligned_cols=121 Identities=15% Similarity=0.205 Sum_probs=104.4
Q ss_pred CCChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 026637 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME 80 (235)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~ 80 (235)
.|+.+++...+++++...|++..++..+|..+...|++++|++.++++++++|+++.+...++.++..+|++++++..++
T Consensus 44 ~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~ 123 (234)
T TIGR02521 44 QGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFE 123 (234)
T ss_pred CCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 37889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HchhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026637 81 ECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 125 (235)
Q Consensus 81 ~a~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~ 125 (235)
+....-+. +. ....+..++.+++..| ++++|...|++.+..
T Consensus 124 ~~~~~~~~-~~--~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~ 164 (234)
T TIGR02521 124 QAIEDPLY-PQ--PARSLENAGLCALKAG-DFDKAEKYLTRALQI 164 (234)
T ss_pred HHHhcccc-cc--chHHHHHHHHHHHHcC-CHHHHHHHHHHHHHh
Confidence 98764221 11 1245566899999988 899999999988876
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=2.2e-10 Score=103.04 Aligned_cols=118 Identities=14% Similarity=0.066 Sum_probs=102.6
Q ss_pred CCChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 026637 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME 80 (235)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~ 80 (235)
+|+..+++...++++..+|+++.++..+|..+...|++++|++.+++|++++|+++.++..+|.++...|++++|+..++
T Consensus 77 ~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~ 156 (296)
T PRK11189 77 LGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLL 156 (296)
T ss_pred CCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 48899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HchhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026637 81 ECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 125 (235)
Q Consensus 81 ~a~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~ 125 (235)
++....|.++ ....|. .+.. ..+ ++++|++.|.+.+..
T Consensus 157 ~al~~~P~~~----~~~~~~-~l~~-~~~-~~~~A~~~l~~~~~~ 194 (296)
T PRK11189 157 AFYQDDPNDP----YRALWL-YLAE-SKL-DPKQAKENLKQRYEK 194 (296)
T ss_pred HHHHhCCCCH----HHHHHH-HHHH-ccC-CHHHHHHHHHHHHhh
Confidence 9999998864 233332 2222 345 899999999876644
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.3e-10 Score=112.85 Aligned_cols=118 Identities=17% Similarity=0.237 Sum_probs=112.7
Q ss_pred CChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 026637 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEE 81 (235)
Q Consensus 2 G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~~ 81 (235)
|..+.+.+..+|+++..|..+.++.++|-+|.+.|+.+||+..+.+||.++|+.+.++.+||.++-++|.+++|+.+++.
T Consensus 300 G~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~ 379 (966)
T KOG4626|consen 300 GLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLK 379 (966)
T ss_pred ccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026637 82 CSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 125 (235)
Q Consensus 82 a~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~ 125 (235)
+..-.|.+. ..|++ +|..|-.+| .+++|+..|..+|+.
T Consensus 380 al~v~p~~a---aa~nN--La~i~kqqg-nl~~Ai~~YkealrI 417 (966)
T KOG4626|consen 380 ALEVFPEFA---AAHNN--LASIYKQQG-NLDDAIMCYKEALRI 417 (966)
T ss_pred HHhhChhhh---hhhhh--HHHHHHhcc-cHHHHHHHHHHHHhc
Confidence 999997754 67885 999999998 999999999999987
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=5.4e-10 Score=110.83 Aligned_cols=147 Identities=13% Similarity=0.079 Sum_probs=112.9
Q ss_pred CChhh----HHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 026637 2 GRPDL----CFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQ 77 (235)
Q Consensus 2 G~~~~----al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~ 77 (235)
|+.++ ++..+++++..+|+++.++..+|.++.+.|++++|+...+++++++|+++.++..++.++..+|++++|+.
T Consensus 260 G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~ 339 (656)
T PRK15174 260 GRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASD 339 (656)
T ss_pred CCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 66664 78899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHchhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchhhhcCCCCCc---hHhHhHHHHHH--------H
Q 026637 78 FMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVH---PEVYLNALGLL--------L 146 (235)
Q Consensus 78 ~l~~a~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~~~~~~~~~~---~~~~~da~sLL--------~ 146 (235)
.+++.....|..+ .....+|.++...| ++++|++.|++.+...-....... ...+.++.+.. |
T Consensus 340 ~l~~al~~~P~~~-----~~~~~~a~al~~~G-~~deA~~~l~~al~~~P~~~~~~~~ea~~~~~~~~~~~~~~~~~~~W 413 (656)
T PRK15174 340 EFVQLAREKGVTS-----KWNRYAAAALLQAG-KTSEAESVFEHYIQARASHLPQSFEEGLLALDGQISAVNLPPERLDW 413 (656)
T ss_pred HHHHHHHhCccch-----HHHHHHHHHHHHCC-CHHHHHHHHHHHHHhChhhchhhHHHHHHHHHHHHHhcCCccchhhH
Confidence 9998888776632 12223577788887 899999999998776311111000 12234555555 8
Q ss_pred HHHhcCcc
Q 026637 147 RVYVRGEL 154 (235)
Q Consensus 147 Rl~l~G~~ 154 (235)
..+|+|-+
T Consensus 414 ~~~~~~~~ 421 (656)
T PRK15174 414 AWEVAGRQ 421 (656)
T ss_pred HHHHhccc
Confidence 88888854
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.1e-09 Score=85.73 Aligned_cols=112 Identities=15% Similarity=0.094 Sum_probs=101.6
Q ss_pred HHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhhcc
Q 026637 9 DIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSS 88 (235)
Q Consensus 9 ~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~~a~~~w~~ 88 (235)
...++++...|++..+...+|..+...|++++|...+++++.++|+++.++..+|-++..+|++++++..++++....|.
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~ 83 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD 83 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 35788999999999999999999999999999999999999999999999999999999999999999999999998877
Q ss_pred CCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchhh
Q 026637 89 CSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE 126 (235)
Q Consensus 89 ~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~~ 126 (235)
.+ -.+.++|.+++..| ++++|+..|++.+...
T Consensus 84 ~~-----~~~~~la~~~~~~g-~~~~A~~~~~~al~~~ 115 (135)
T TIGR02552 84 DP-----RPYFHAAECLLALG-EPESALKALDLAIEIC 115 (135)
T ss_pred Ch-----HHHHHHHHHHHHcC-CHHHHHHHHHHHHHhc
Confidence 54 23345999999998 9999999999988773
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.1e-09 Score=107.37 Aligned_cols=119 Identities=14% Similarity=0.080 Sum_probs=109.5
Q ss_pred CCChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 026637 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME 80 (235)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~ 80 (235)
+|+.++++..+++++..+|+++..+..+|..+.+.|++++|+..++++++++|+++.++..+|.++...|++++|+..++
T Consensus 344 ~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 423 (615)
T TIGR00990 344 KGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQ 423 (615)
T ss_pred cCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HchhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026637 81 ECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 125 (235)
Q Consensus 81 ~a~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~ 125 (235)
++....|... ..++ .+|..++..| ++++|+..|++.+..
T Consensus 424 kal~l~P~~~---~~~~--~la~~~~~~g-~~~eA~~~~~~al~~ 462 (615)
T TIGR00990 424 KSIDLDPDFI---FSHI--QLGVTQYKEG-SIASSMATFRRCKKN 462 (615)
T ss_pred HHHHcCccCH---HHHH--HHHHHHHHCC-CHHHHHHHHHHHHHh
Confidence 9999987732 2333 5899999998 999999999998875
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.2e-09 Score=98.24 Aligned_cols=118 Identities=9% Similarity=0.024 Sum_probs=104.0
Q ss_pred CChhhHHHHHHhhcC---CCC-CChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 026637 2 GRPDLCFDIIHQVLP---YNQ-QEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQ 77 (235)
Q Consensus 2 G~~~~al~~~~ral~---~~p-~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~ 77 (235)
+..+.++..+.+++. ..| ..+..+...|.++...|++++|+..+++|++++|+++.++..+|.++...|++++|+.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 345678888889995 444 3467889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHchhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026637 78 FMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 125 (235)
Q Consensus 78 ~l~~a~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~ 125 (235)
.++++....|+.. ..+..+|.+++..| ++++|++.|++.+..
T Consensus 120 ~~~~Al~l~P~~~-----~a~~~lg~~l~~~g-~~~eA~~~~~~al~~ 161 (296)
T PRK11189 120 AFDSVLELDPTYN-----YAYLNRGIALYYGG-RYELAQDDLLAFYQD 161 (296)
T ss_pred HHHHHHHhCCCCH-----HHHHHHHHHHHHCC-CHHHHHHHHHHHHHh
Confidence 9999999988743 34556999999988 999999999999987
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.12 E-value=5.7e-10 Score=98.51 Aligned_cols=135 Identities=18% Similarity=0.160 Sum_probs=104.9
Q ss_pred CChhhHHHHHHhhcC--CCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 026637 2 GRPDLCFDIIHQVLP--YNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFM 79 (235)
Q Consensus 2 G~~~~al~~~~ral~--~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l 79 (235)
|+.+++...++++.. ..++++.++..+|..+...|+.++|++..++||+++|+|+.+.-.+++++...|+.+++.+.+
T Consensus 124 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l 203 (280)
T PF13429_consen 124 GDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREAL 203 (280)
T ss_dssp T-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHH
Confidence 677778888888554 346889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHchhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchhhhcCCCCCchHhHhHHHHHHHH
Q 026637 80 EECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNALGLLLR 147 (235)
Q Consensus 80 ~~a~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~~~~~~~~~~~~~~~da~sLL~R 147 (235)
+......|..|. +|+.+|.+++.+| ++++|+.+|++.+... ++ .+..++.-+..|..
T Consensus 204 ~~~~~~~~~~~~-----~~~~la~~~~~lg-~~~~Al~~~~~~~~~~--p~---d~~~~~~~a~~l~~ 260 (280)
T PF13429_consen 204 KRLLKAAPDDPD-----LWDALAAAYLQLG-RYEEALEYLEKALKLN--PD---DPLWLLAYADALEQ 260 (280)
T ss_dssp HHHHHH-HTSCC-----HCHHHHHHHHHHT--HHHHHHHHHHHHHHS--TT----HHHHHHHHHHHT-
T ss_pred HHHHHHCcCHHH-----HHHHHHHHhcccc-cccccccccccccccc--cc---cccccccccccccc
Confidence 999888877652 5667999999998 9999999999988752 22 24444544444433
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=4.1e-09 Score=104.62 Aligned_cols=119 Identities=11% Similarity=0.110 Sum_probs=101.7
Q ss_pred CCChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHH----HHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 026637 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSD----AEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAV 76 (235)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~----Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi 76 (235)
.|+.+++...+++++...|+++.++..+|..+.+.|++++ |++.++++++++|+++.++..+|.++..+|++++|+
T Consensus 225 ~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~ 304 (656)
T PRK15174 225 VGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAI 304 (656)
T ss_pred CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 4788889999999999899999999999999999999886 788899999999999999999999999999999999
Q ss_pred HHHHHchhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026637 77 QFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 125 (235)
Q Consensus 77 ~~l~~a~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~ 125 (235)
..++++....|..+ ..++ +++..+...| ++++|++.|++.+..
T Consensus 305 ~~l~~al~l~P~~~---~a~~--~La~~l~~~G-~~~eA~~~l~~al~~ 347 (656)
T PRK15174 305 PLLQQSLATHPDLP---YVRA--MYARALRQVG-QYTAASDEFVQLARE 347 (656)
T ss_pred HHHHHHHHhCCCCH---HHHH--HHHHHHHHCC-CHHHHHHHHHHHHHh
Confidence 99999988887743 2233 4888888887 899999999887765
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.3e-09 Score=103.15 Aligned_cols=116 Identities=11% Similarity=-0.013 Sum_probs=99.4
Q ss_pred hhhHHHHHHhhc---CCCCCChhHHHHHHHHHHHh---------CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q 026637 4 PDLCFDIIHQVL---PYNQQEDFIFGILAFSLLEL---------GQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCC 71 (235)
Q Consensus 4 ~~~al~~~~ral---~~~p~~~~~~g~~Af~L~e~---------g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr 71 (235)
.++++..+.|++ +.+|++.-+++++||++... ....+|.+.+++|++++|+|++|+..+|+++-+.|+
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~ 353 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSGQ 353 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcc
Confidence 357888899999 99999999999999987664 245568899999999999999999999999999999
Q ss_pred HHHHHHHHHHchhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026637 72 FKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 125 (235)
Q Consensus 72 ~~egi~~l~~a~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~ 125 (235)
++.|+.+++++....|+.. ..+++ .|+.+...| +.++|++..++.++.
T Consensus 354 ~~~a~~~f~rA~~L~Pn~A---~~~~~--~~~~~~~~G-~~~~a~~~i~~alrL 401 (458)
T PRK11906 354 AKVSHILFEQAKIHSTDIA---SLYYY--RALVHFHNE-KIEEARICIDKSLQL 401 (458)
T ss_pred hhhHHHHHHHHhhcCCccH---HHHHH--HHHHHHHcC-CHHHHHHHHHHHhcc
Confidence 9999999999999997754 34554 666676777 999999999998776
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.05 E-value=6.6e-09 Score=85.31 Aligned_cols=119 Identities=10% Similarity=0.069 Sum_probs=107.0
Q ss_pred CCChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHcCCHHHHHHH
Q 026637 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKIN--KHDCWSQHALCHVLQHDCCFKEAVQF 78 (235)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~--P~dawA~halahvl~~~Gr~~egi~~ 78 (235)
+|+.++++...++++...|.++.++..++..+...|++++|++..++++... |..+.....++.++...|++++++..
T Consensus 78 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 157 (234)
T TIGR02521 78 LGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKY 157 (234)
T ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHH
Confidence 4889999999999999999999999999999999999999999999999865 56678899999999999999999999
Q ss_pred HHHchhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026637 79 MEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 125 (235)
Q Consensus 79 l~~a~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~ 125 (235)
+++.....|..+ -.+..+|..+...| ++++|+..+++.+..
T Consensus 158 ~~~~~~~~~~~~-----~~~~~la~~~~~~~-~~~~A~~~~~~~~~~ 198 (234)
T TIGR02521 158 LTRALQIDPQRP-----ESLLELAELYYLRG-QYKDARAYLERYQQT 198 (234)
T ss_pred HHHHHHhCcCCh-----HHHHHHHHHHHHcC-CHHHHHHHHHHHHHh
Confidence 999999887743 23456899999998 999999999988765
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=3.4e-09 Score=100.35 Aligned_cols=127 Identities=10% Similarity=0.060 Sum_probs=104.5
Q ss_pred ChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc
Q 026637 3 RPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEEC 82 (235)
Q Consensus 3 ~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~~a 82 (235)
+..++++.++||++.+|+|+++++.+|+++.-.|+++.|...++||+.||||++.++...|.++.+.|+.++|++.++++
T Consensus 319 ~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~a 398 (458)
T PRK11906 319 AAQKALELLDYVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKS 398 (458)
T ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccCCcchhHHHHHHHHH-HHHhCCCCHHHHHHHHHhhchhhhcCCCCCchHhHhHHH
Q 026637 83 SSTWSSCSSFMYTHNWWHVAL-CYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNAL 142 (235)
Q Consensus 83 ~~~w~~~~~~l~~H~~WHlAL-~~le~G~~~deAl~~yd~~i~~~~~~~~~~~~~~~~da~ 142 (235)
.+..|.-- .-.---+-+ .|... ..|+++++|-+.... .+-++++|-.
T Consensus 399 lrLsP~~~----~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~-------~~~~~~~~~~ 446 (458)
T PRK11906 399 LQLEPRRR----KAVVIKECVDMYVPN--PLKNNIKLYYKETES-------ESHRVIIDNI 446 (458)
T ss_pred hccCchhh----HHHHHHHHHHHHcCC--chhhhHHHHhhcccc-------ccchhhHHHH
Confidence 99987732 111112334 55575 489999999664433 2345566654
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.02 E-value=3.2e-09 Score=103.30 Aligned_cols=157 Identities=19% Similarity=0.216 Sum_probs=102.5
Q ss_pred CChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 026637 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEE 81 (235)
Q Consensus 2 G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~~ 81 (235)
|..+++-...+++++..|+.+-+++++|-++.++|.+++|...+..||.+.|+.+.|+.++|.++-++|+..+|+.-+++
T Consensus 368 ~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~r 447 (966)
T KOG4626|consen 368 GKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTR 447 (966)
T ss_pred ccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHH
Confidence 55666666777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred chhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchhhhcCCCCCchHhHhHHHHHHHHHHhcCcccccccch
Q 026637 82 CSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNALGLLLRVYVRGELDVFGNRL 161 (235)
Q Consensus 82 a~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~~~~~~~~~~~~~~~da~sLL~Rl~l~G~~~~~g~rw 161 (235)
++...|. |-..|++ +|..|-+.| ...+|+.-|++++-. +.+ ++... +-||--|+..--+.|...|.
T Consensus 448 AI~~nPt---~AeAhsN--Lasi~kDsG-ni~~AI~sY~~aLkl---kPD--fpdA~---cNllh~lq~vcdw~D~d~~~ 513 (966)
T KOG4626|consen 448 AIQINPT---FAEAHSN--LASIYKDSG-NIPEAIQSYRTALKL---KPD--FPDAY---CNLLHCLQIVCDWTDYDKRM 513 (966)
T ss_pred HHhcCcH---HHHHHhh--HHHHhhccC-CcHHHHHHHHHHHcc---CCC--Cchhh---hHHHHHHHHHhcccchHHHH
Confidence 7766643 4456664 777777776 788888888777655 222 22222 33555566533332345666
Q ss_pred HHHHHHHHhhh
Q 026637 162 KVLADCVADQA 172 (235)
Q Consensus 162 ~~la~~~~~~~ 172 (235)
+.|........
T Consensus 514 ~kl~sivrdql 524 (966)
T KOG4626|consen 514 KKLVSIVRDQL 524 (966)
T ss_pred HHHHHHHHHHH
Confidence 77766666544
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.02 E-value=4e-10 Score=99.48 Aligned_cols=118 Identities=19% Similarity=0.192 Sum_probs=89.9
Q ss_pred CCChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 026637 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME 80 (235)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~ 80 (235)
.|+.++|+..+++++..+|+++.+...+++.+.++|+++++.++.++.....|+|+..+..+|.++...|+.++|+.+++
T Consensus 159 ~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~ 238 (280)
T PF13429_consen 159 LGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLE 238 (280)
T ss_dssp CCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccc
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HchhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhch
Q 026637 81 ECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIW 124 (235)
Q Consensus 81 ~a~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~ 124 (235)
+.....|.+| -+..|+|-++...| ++++|++++.+...
T Consensus 239 ~~~~~~p~d~-----~~~~~~a~~l~~~g-~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 239 KALKLNPDDP-----LWLLAYADALEQAG-RKDEALRLRRQALR 276 (280)
T ss_dssp HHHHHSTT-H-----HHHHHHHHHHT------------------
T ss_pred cccccccccc-----cccccccccccccc-cccccccccccccc
Confidence 9999999865 23457999999998 99999999977654
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=98.99 E-value=7.2e-09 Score=101.13 Aligned_cols=120 Identities=10% Similarity=0.028 Sum_probs=101.4
Q ss_pred CCChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 026637 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME 80 (235)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~ 80 (235)
.|+.+++...+++++...|+++.++..+|..+...|++++|++.++++++.+|+++.+..+++.++...|+ .+++..++
T Consensus 749 ~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~ 827 (899)
T TIGR02917 749 SGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAE 827 (899)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHH
Confidence 47888899999999998899999999999999999999999999999999999999999999999999999 77999999
Q ss_pred HchhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchhhh
Q 026637 81 ECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKEL 127 (235)
Q Consensus 81 ~a~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~~~ 127 (235)
+.....|..+. .+-.+|.++...| ++++|+++|++.+....
T Consensus 828 ~~~~~~~~~~~-----~~~~~~~~~~~~g-~~~~A~~~~~~a~~~~~ 868 (899)
T TIGR02917 828 KALKLAPNIPA-----ILDTLGWLLVEKG-EADRALPLLRKAVNIAP 868 (899)
T ss_pred HHHhhCCCCcH-----HHHHHHHHHHHcC-CHHHHHHHHHHHHhhCC
Confidence 88888777542 3335788888887 89999999988886443
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.3e-07 Score=86.07 Aligned_cols=123 Identities=14% Similarity=0.111 Sum_probs=67.4
Q ss_pred CChhhHHHHHHhhcCCCCCC----hhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 026637 2 GRPDLCFDIIHQVLPYNQQE----DFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQ 77 (235)
Q Consensus 2 G~~~~al~~~~ral~~~p~~----~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~ 77 (235)
|+.+++....++++...+.. ..++..+|..+...|++++|++.++++++.+|.+..++..++.++..+|++++++.
T Consensus 83 g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~ 162 (389)
T PRK11788 83 GEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAID 162 (389)
T ss_pred CcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHH
Confidence 55566666666655532211 24455556666666666666666666666666666666666666666666666666
Q ss_pred HHHHchhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026637 78 FMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 125 (235)
Q Consensus 78 ~l~~a~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~ 125 (235)
.+++.....|..+.....+.+..+|..+++.| ++++|++.|++.+..
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~-~~~~A~~~~~~al~~ 209 (389)
T PRK11788 163 VAERLEKLGGDSLRVEIAHFYCELAQQALARG-DLDAARALLKKALAA 209 (389)
T ss_pred HHHHHHHhcCCcchHHHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHhH
Confidence 66665554443221111223334555555555 566666666655543
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.7e-09 Score=105.23 Aligned_cols=136 Identities=13% Similarity=0.187 Sum_probs=118.5
Q ss_pred CChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 026637 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEE 81 (235)
Q Consensus 2 G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~~ 81 (235)
++++.++..++||+-.+|.+.|++..+|.-+..+.+||.|...+|.||.++|++-.|+.-+|.|+..+++++.|.-++++
T Consensus 435 kdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqk 514 (638)
T KOG1126|consen 435 KDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQK 514 (638)
T ss_pred hHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheeccchhhHHHHHHHh
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchhhhcCCCCCchHhHhHHHHHHHHH
Q 026637 82 CSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNALGLLLRV 148 (235)
Q Consensus 82 a~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~~~~~~~~~~~~~~~da~sLL~Rl 148 (235)
+...+|+ ++.+.+| .+.++..+| +.|+|+.+|++++.-. ..+ +.-...-+++|+-+
T Consensus 515 A~~INP~-nsvi~~~----~g~~~~~~k-~~d~AL~~~~~A~~ld--~kn---~l~~~~~~~il~~~ 570 (638)
T KOG1126|consen 515 AVEINPS-NSVILCH----IGRIQHQLK-RKDKALQLYEKAIHLD--PKN---PLCKYHRASILFSL 570 (638)
T ss_pred hhcCCcc-chhHHhh----hhHHHHHhh-hhhHHHHHHHHHHhcC--CCC---chhHHHHHHHHHhh
Confidence 9999999 6665555 456677787 8999999999999874 332 22245666666543
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.1e-07 Score=86.68 Aligned_cols=118 Identities=10% Similarity=-0.006 Sum_probs=74.5
Q ss_pred CChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHH-----HHHHHHHHHHHcCCHHHHH
Q 026637 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCW-----SQHALCHVLQHDCCFKEAV 76 (235)
Q Consensus 2 G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~daw-----A~halahvl~~~Gr~~egi 76 (235)
|+.++++..+++++...|.+..++..++.++...|++++|++.+++++..+|++.. .+..++.++..+|++++++
T Consensus 121 g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 200 (389)
T PRK11788 121 GLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAAR 200 (389)
T ss_pred CCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHH
Confidence 56666666667766666666666666666666777777777777777666666532 3345666666667777777
Q ss_pred HHHHHchhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026637 77 QFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 125 (235)
Q Consensus 77 ~~l~~a~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~ 125 (235)
..+++..+..|.. ...+..++..+...| ++++|+++|++.+..
T Consensus 201 ~~~~~al~~~p~~-----~~~~~~la~~~~~~g-~~~~A~~~~~~~~~~ 243 (389)
T PRK11788 201 ALLKKALAADPQC-----VRASILLGDLALAQG-DYAAAIEALERVEEQ 243 (389)
T ss_pred HHHHHHHhHCcCC-----HHHHHHHHHHHHHCC-CHHHHHHHHHHHHHH
Confidence 7777666665442 123334666666665 677777777665543
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=98.96 E-value=2.3e-08 Score=97.64 Aligned_cols=117 Identities=15% Similarity=0.093 Sum_probs=103.4
Q ss_pred CCChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 026637 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME 80 (235)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~ 80 (235)
.|+.++++...++++...|++ .....++.++...|++++|++..++++..+|+++.+...++.++...|++++|+..++
T Consensus 716 ~g~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 794 (899)
T TIGR02917 716 QKDYPAAIQAYRKALKRAPSS-QNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYR 794 (899)
T ss_pred CCCHHHHHHHHHHHHhhCCCc-hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHH
Confidence 488999999999999998887 5566788899999999999999999999999999999999999999999999999999
Q ss_pred HchhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026637 81 ECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 125 (235)
Q Consensus 81 ~a~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~ 125 (235)
+.....|+++ ..+-.++..+...| + ++|+..|++.+..
T Consensus 795 ~~~~~~p~~~-----~~~~~l~~~~~~~~-~-~~A~~~~~~~~~~ 832 (899)
T TIGR02917 795 TVVKKAPDNA-----VVLNNLAWLYLELK-D-PRALEYAEKALKL 832 (899)
T ss_pred HHHHhCCCCH-----HHHHHHHHHHHhcC-c-HHHHHHHHHHHhh
Confidence 9999988754 22234888888887 7 8899999998876
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=6.2e-08 Score=101.62 Aligned_cols=119 Identities=12% Similarity=0.102 Sum_probs=105.0
Q ss_pred CCChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHH--------------HHHHHHHHH
Q 026637 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCW--------------SQHALCHVL 66 (235)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~daw--------------A~halahvl 66 (235)
.|+.++++..+++++..+|+++.++..+|.++...|++++|++.++++++++|++.. .....+.++
T Consensus 282 ~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~ 361 (1157)
T PRK11447 282 SGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAA 361 (1157)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHH
Confidence 488999999999999999999999999999999999999999999999999998753 334567888
Q ss_pred HHcCCHHHHHHHHHHchhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026637 67 QHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 125 (235)
Q Consensus 67 ~~~Gr~~egi~~l~~a~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~ 125 (235)
..+|++++|+..++++....|..+ ..++ .+|.+++..| ++++|++.|++.+..
T Consensus 362 ~~~g~~~eA~~~~~~Al~~~P~~~---~a~~--~Lg~~~~~~g-~~~eA~~~y~~aL~~ 414 (1157)
T PRK11447 362 LKANNLAQAERLYQQARQVDNTDS---YAVL--GLGDVAMARK-DYAAAERYYQQALRM 414 (1157)
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCH---HHHH--HHHHHHHHCC-CHHHHHHHHHHHHHh
Confidence 999999999999999999988753 2333 5899999998 999999999999976
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=98.94 E-value=2.1e-08 Score=103.62 Aligned_cols=118 Identities=11% Similarity=0.012 Sum_probs=106.7
Q ss_pred CCChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 026637 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME 80 (235)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~ 80 (235)
.|+.+++....++++...|++...+..++..+...|++++|+...++|++++|+ +.++.++|.++...|++++|+.+++
T Consensus 555 ~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~lG~~deA~~~l~ 633 (987)
T PRK09782 555 AGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPS-ANAYVARATIYRQRHNVPAAVSDLR 633 (987)
T ss_pred CCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 388899999999999999999888888888888889999999999999999996 9999999999999999999999999
Q ss_pred HchhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026637 81 ECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 125 (235)
Q Consensus 81 ~a~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~ 125 (235)
++....|+.+ ..|+ ++|.++.+.| ++++|++.|++.+..
T Consensus 634 ~AL~l~Pd~~---~a~~--nLG~aL~~~G-~~eeAi~~l~~AL~l 672 (987)
T PRK09782 634 AALELEPNNS---NYQA--ALGYALWDSG-DIAQSREMLERAHKG 672 (987)
T ss_pred HHHHhCCCCH---HHHH--HHHHHHHHCC-CHHHHHHHHHHHHHh
Confidence 9999998854 3454 4898999998 999999999999987
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=98.92 E-value=1.5e-08 Score=93.81 Aligned_cols=103 Identities=13% Similarity=0.047 Sum_probs=94.2
Q ss_pred CCChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 026637 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME 80 (235)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~ 80 (235)
.|++++|+..+.+++..+|+++.++..+|.++...|++++|+..+++|+.++|+++.+++.+|.++...|++++|+..++
T Consensus 15 ~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~eA~~~~~ 94 (356)
T PLN03088 15 DDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAKAALE 94 (356)
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 37899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HchhhhccCCcchhHHHHHHHHHHHH
Q 026637 81 ECSSTWSSCSSFMYTHNWWHVALCYL 106 (235)
Q Consensus 81 ~a~~~w~~~~~~l~~H~~WHlAL~~l 106 (235)
++....|..+ ..+.|...+...+
T Consensus 95 ~al~l~P~~~---~~~~~l~~~~~kl 117 (356)
T PLN03088 95 KGASLAPGDS---RFTKLIKECDEKI 117 (356)
T ss_pred HHHHhCCCCH---HHHHHHHHHHHHH
Confidence 9999998865 4567755554454
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.6e-08 Score=89.42 Aligned_cols=118 Identities=14% Similarity=0.135 Sum_probs=105.0
Q ss_pred CChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 026637 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEE 81 (235)
Q Consensus 2 G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~~ 81 (235)
|++.++...+.|+....|.||.+++-+|.+|.+.|++++|+..+++|+++.|+++-...+++..+.-+|+.+.|...+.+
T Consensus 114 g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~ 193 (257)
T COG5010 114 GNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLP 193 (257)
T ss_pred cchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHH
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred chhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026637 82 CSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 125 (235)
Q Consensus 82 a~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~ 125 (235)
+.-.=+.++. ..|| +|+..-..| ++++|.+|.++.+.+
T Consensus 194 a~l~~~ad~~--v~~N---LAl~~~~~g-~~~~A~~i~~~e~~~ 231 (257)
T COG5010 194 AYLSPAADSR--VRQN---LALVVGLQG-DFREAEDIAVQELLS 231 (257)
T ss_pred HHhCCCCchH--HHHH---HHHHHhhcC-ChHHHHhhccccccc
Confidence 8766554332 2455 999998888 999999888765554
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.91 E-value=2.6e-08 Score=99.58 Aligned_cols=113 Identities=7% Similarity=-0.095 Sum_probs=99.7
Q ss_pred HHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhh
Q 026637 7 CFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTW 86 (235)
Q Consensus 7 al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~~a~~~w 86 (235)
++...+-....+|.++.++-++|-++.+.|++++|+...+++++++|++..|.++++.++..+++++||+..+++..+.-
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~ 150 (694)
T PRK15179 71 ALPELLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG 150 (694)
T ss_pred hHHHHHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC
Confidence 33333434445788899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026637 87 SSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 125 (235)
Q Consensus 87 ~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~ 125 (235)
|+.+ ..|+ ++|.++.+.| +|++|+++|++.+.+
T Consensus 151 p~~~---~~~~--~~a~~l~~~g-~~~~A~~~y~~~~~~ 183 (694)
T PRK15179 151 SSSA---REIL--LEAKSWDEIG-QSEQADACFERLSRQ 183 (694)
T ss_pred CCCH---HHHH--HHHHHHHHhc-chHHHHHHHHHHHhc
Confidence 8843 3345 5999999998 999999999999985
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.4e-07 Score=98.96 Aligned_cols=188 Identities=17% Similarity=0.098 Sum_probs=131.0
Q ss_pred CCChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 026637 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME 80 (235)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~ 80 (235)
.|+.++++...++++..+|++++++..+|..+...|++++|++..+++++++|+++.++.+++..+...|+.++++..++
T Consensus 474 ~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~ 553 (1157)
T PRK11447 474 QGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLN 553 (1157)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 38899999999999999999999999999999999999999999999999999999999998888888888888888776
Q ss_pred Hchh----------------------------------------hhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 026637 81 ECSS----------------------------------------TWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYD 120 (235)
Q Consensus 81 ~a~~----------------------------------------~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd 120 (235)
+... ..|..+ ..++ -+|..+++.| ++++|++.|+
T Consensus 554 ~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~---~~~~--~La~~~~~~g-~~~~A~~~y~ 627 (1157)
T PRK11447 554 TLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPST---RIDL--TLADWAQQRG-DYAAARAAYQ 627 (1157)
T ss_pred hCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCc---hHHH--HHHHHHHHcC-CHHHHHHHHH
Confidence 5421 112211 2233 3888888988 8999999999
Q ss_pred hhchhhhcCCCCCchHhHhHHHHHHHHHHhc-CcccccccchHHHHHHHHhhhcchhcchhhHHHHHHHhcCCCchHHHH
Q 026637 121 NHIWKELEKPDAVHPEVYLNALGLLLRVYVR-GELDVFGNRLKVLADCVADQANWYLECHLDLLILWALANTGEVSKAED 199 (235)
Q Consensus 121 ~~i~~~~~~~~~~~~~~~~da~sLL~Rl~l~-G~~~~~g~rw~~la~~~~~~~~~~~~~F~d~H~~~al~~ag~~~~~~~ 199 (235)
+.+... +.. .++---|-++... |.. .+=-+.+. ......++.. ..-.....++...|+.+.+.+
T Consensus 628 ~al~~~--P~~-------~~a~~~la~~~~~~g~~---~eA~~~l~-~ll~~~p~~~--~~~~~la~~~~~~g~~~eA~~ 692 (1157)
T PRK11447 628 RVLTRE--PGN-------ADARLGLIEVDIAQGDL---AAARAQLA-KLPATANDSL--NTQRRVALAWAALGDTAAAQR 692 (1157)
T ss_pred HHHHhC--CCC-------HHHHHHHHHHHHHCCCH---HHHHHHHH-HHhccCCCCh--HHHHHHHHHHHhCCCHHHHHH
Confidence 988762 221 2222222222222 321 11111122 2211111221 223344667778999999999
Q ss_pred HHHHHHHHhh
Q 026637 200 LLKGLKSRHS 209 (235)
Q Consensus 200 ll~~~~~~~~ 209 (235)
+++.+.....
T Consensus 693 ~~~~al~~~~ 702 (1157)
T PRK11447 693 TFNRLIPQAK 702 (1157)
T ss_pred HHHHHhhhCc
Confidence 8888776543
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.4e-08 Score=79.39 Aligned_cols=90 Identities=13% Similarity=0.066 Sum_probs=86.4
Q ss_pred CCChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 026637 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME 80 (235)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~ 80 (235)
.|+.+++...++++++.+|+++.++..+|..+...|++++|+..+++++.++|+++..+..+|+++...|++++|+.+++
T Consensus 30 ~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 109 (135)
T TIGR02552 30 QGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLALGEPESALKALD 109 (135)
T ss_pred cccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 37889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HchhhhccCC
Q 026637 81 ECSSTWSSCS 90 (235)
Q Consensus 81 ~a~~~w~~~~ 90 (235)
+..+..|..+
T Consensus 110 ~al~~~p~~~ 119 (135)
T TIGR02552 110 LAIEICGENP 119 (135)
T ss_pred HHHHhccccc
Confidence 9999998854
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.88 E-value=2.2e-07 Score=83.68 Aligned_cols=210 Identities=11% Similarity=0.038 Sum_probs=127.6
Q ss_pred CCChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHH----HHHHHHHHHHHcCCHHHHH
Q 026637 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCW----SQHALCHVLQHDCCFKEAV 76 (235)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~daw----A~halahvl~~~Gr~~egi 76 (235)
.|+.+++...+++++...|+++.++.++|-++.+.|++++|++..++++.+.|.++. .+..++.++..+|++++++
T Consensus 127 ~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~ 206 (355)
T cd05804 127 AGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAAL 206 (355)
T ss_pred cCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHH
Confidence 489999999999999999999999999999999999999999999999999986543 2346899999999999999
Q ss_pred HHHHHchhhhccCCcchhHHHH-HHHHHHHHhCCCCHHHHHHH--HHhhchhhhcCCCCCchHhHhHHHHHHHHHHh-cC
Q 026637 77 QFMEECSSTWSSCSSFMYTHNW-WHVALCYLEGHSPMRKVLEI--YDNHIWKELEKPDAVHPEVYLNALGLLLRVYV-RG 152 (235)
Q Consensus 77 ~~l~~a~~~w~~~~~~l~~H~~-WHlAL~~le~G~~~deAl~~--yd~~i~~~~~~~~~~~~~~~~da~sLL~Rl~l-~G 152 (235)
..+++.....+..+......+. +++....++ | ..+.+.++ ......+.. ++ ......+.. .-|..+ .|
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g-~~~~~~~w~~~~~~~~~~~--~~--~~~~~~~~~--~a~~~~~~~ 278 (355)
T cd05804 207 AIYDTHIAPSAESDPALDLLDAASLLWRLELA-G-HVDVGDRWEDLADYAAWHF--PD--HGLAFNDLH--AALALAGAG 278 (355)
T ss_pred HHHHHHhccccCCChHHHHhhHHHHHHHHHhc-C-CCChHHHHHHHHHHHHhhc--Cc--ccchHHHHH--HHHHHhcCC
Confidence 9999986544432212111122 555555544 3 33333333 111111110 11 111122321 122222 22
Q ss_pred cccccccchHHHHHHHHh---hhcchhcchhhHHHHHHHhcCCCchHHHHHHHHHHHHhhcCchHHHHH
Q 026637 153 ELDVFGNRLKVLADCVAD---QANWYLECHLDLLILWALANTGEVSKAEDLLKGLKSRHSKMIKKKQEL 218 (235)
Q Consensus 153 ~~~~~g~rw~~la~~~~~---~~~~~~~~F~d~H~~~al~~ag~~~~~~~ll~~~~~~~~~~~~~~~~~ 218 (235)
........++.+...... ........-..+-.+++..+.|+.+.+-++|...-..+..+||+..|+
T Consensus 279 ~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a~~~ggs~aq~ 347 (355)
T cd05804 279 DKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDLARIGGSHAQR 347 (355)
T ss_pred CHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 110011122222222211 111122233445556666688988888888877777777778876665
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=98.87 E-value=3.2e-08 Score=82.00 Aligned_cols=102 Identities=14% Similarity=0.065 Sum_probs=91.6
Q ss_pred CCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhhccCCcchhHHHH
Q 026637 19 QQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNW 98 (235)
Q Consensus 19 p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~~a~~~w~~~~~~l~~H~~ 98 (235)
++.=....-+|+-+.+.|++++|++.++....++|.++..+.+||-|+..+|++++||..+..+....|++| ...
T Consensus 32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp-----~~~ 106 (157)
T PRK15363 32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAP-----QAP 106 (157)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCc-----hHH
Confidence 333345667788899999999999999999999999999999999999999999999999999999999877 344
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHhhchhh
Q 026637 99 WHVALCYLEGHSPMRKVLEIYDNHIWKE 126 (235)
Q Consensus 99 WHlAL~~le~G~~~deAl~~yd~~i~~~ 126 (235)
.|+|.+++..| +.++|.+.|+.+|.--
T Consensus 107 ~~ag~c~L~lG-~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 107 WAAAECYLACD-NVCYAIKALKAVVRIC 133 (157)
T ss_pred HHHHHHHHHcC-CHHHHHHHHHHHHHHh
Confidence 57999999998 9999999999999874
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.6e-07 Score=94.72 Aligned_cols=115 Identities=14% Similarity=0.044 Sum_probs=71.4
Q ss_pred CChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 026637 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEE 81 (235)
Q Consensus 2 G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~~ 81 (235)
|+.++|....++++..+|+++.++..++.++.+.|++++|....+++++.+|+++. +..++.++..+|++++|+..+++
T Consensus 63 g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~ 141 (765)
T PRK10049 63 KQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQ 141 (765)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHH
Confidence 56666666666666666666666666666666666666666666666666666666 66666666666666666666666
Q ss_pred chhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhc
Q 026637 82 CSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHI 123 (235)
Q Consensus 82 a~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i 123 (235)
+....|+.+ ..++ .++.++...| +.++|++.+++..
T Consensus 142 al~~~P~~~---~~~~--~la~~l~~~~-~~e~Al~~l~~~~ 177 (765)
T PRK10049 142 ALPRAPQTQ---QYPT--EYVQALRNNR-LSAPALGAIDDAN 177 (765)
T ss_pred HHHhCCCCH---HHHH--HHHHHHHHCC-ChHHHHHHHHhCC
Confidence 666665532 1222 2555555544 5666666665433
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.84 E-value=2.5e-08 Score=85.08 Aligned_cols=90 Identities=16% Similarity=0.158 Sum_probs=84.1
Q ss_pred CCChhhHHHHHHhhcCCCCCChhHHHHHHHHH-HHhCC--HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 026637 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSL-LELGQ--MSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQ 77 (235)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~~g~~Af~L-~e~g~--~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~ 77 (235)
+|+.+.+....++++...|+++.++..+|.++ ...|+ +++|++..+++++++|+++.++..+|.++.++|++++|+.
T Consensus 86 ~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~ 165 (198)
T PRK10370 86 RNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIE 165 (198)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHH
Confidence 58999999999999999999999999999986 67777 5999999999999999999999999999999999999999
Q ss_pred HHHHchhhhccCC
Q 026637 78 FMEECSSTWSSCS 90 (235)
Q Consensus 78 ~l~~a~~~w~~~~ 90 (235)
.+++.....|...
T Consensus 166 ~~~~aL~l~~~~~ 178 (198)
T PRK10370 166 LWQKVLDLNSPRV 178 (198)
T ss_pred HHHHHHhhCCCCc
Confidence 9999988887643
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.81 E-value=8.7e-08 Score=82.01 Aligned_cols=124 Identities=11% Similarity=0.031 Sum_probs=99.2
Q ss_pred CCChhhHHHHHHhhcCCCCCCh---hHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHH---HHHHHHHHHHHc-----
Q 026637 1 MGRPDLCFDIIHQVLPYNQQED---FIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCW---SQHALCHVLQHD----- 69 (235)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~---~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~daw---A~halahvl~~~----- 69 (235)
.|+++++...+++++..+|+++ .++..+|.++...|++++|+..++++++..|+++. ++..+|.++...
T Consensus 46 ~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~ 125 (235)
T TIGR03302 46 SGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDRVD 125 (235)
T ss_pred cCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhccccc
Confidence 3788899999999999888776 46788899999999999999999999999998886 688888888876
Q ss_pred ---CCHHHHHHHHHHchhhhccCCcchhH------------HHHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026637 70 ---CCFKEAVQFMEECSSTWSSCSSFMYT------------HNWWHVALCYLEGHSPMRKVLEIYDNHIWK 125 (235)
Q Consensus 70 ---Gr~~egi~~l~~a~~~w~~~~~~l~~------------H~~WHlAL~~le~G~~~deAl~~yd~~i~~ 125 (235)
|++++++..+++....+|..+..... .-.+-+|.+++..| ++++|+..|.+.+..
T Consensus 126 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g-~~~~A~~~~~~al~~ 195 (235)
T TIGR03302 126 RDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRG-AYVAAINRFETVVEN 195 (235)
T ss_pred CCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHH
Confidence 88999999999998888874321000 00134788888887 899999999888754
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.81 E-value=1e-07 Score=87.35 Aligned_cols=118 Identities=14% Similarity=0.098 Sum_probs=110.1
Q ss_pred CChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhC-CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH--HHHHHH
Q 026637 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELG-QMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCF--KEAVQF 78 (235)
Q Consensus 2 G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g-~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~--~egi~~ 78 (235)
++.++++....+++..+|++..++...+.+|...| .+.++.....+++..||++..+++..+.++...|+. ++.+++
T Consensus 51 e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~ 130 (320)
T PLN02789 51 ERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEF 130 (320)
T ss_pred CCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHH
Confidence 67899999999999999999999999999999999 789999999999999999999999999999999985 788999
Q ss_pred HHHchhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026637 79 MEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 125 (235)
Q Consensus 79 l~~a~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~ 125 (235)
++++....|. + .|.|.|.+..+...| +++++++.|++.|..
T Consensus 131 ~~kal~~dpk-N----y~AW~~R~w~l~~l~-~~~eeL~~~~~~I~~ 171 (320)
T PLN02789 131 TRKILSLDAK-N----YHAWSHRQWVLRTLG-GWEDELEYCHQLLEE 171 (320)
T ss_pred HHHHHHhCcc-c----HHHHHHHHHHHHHhh-hHHHHHHHHHHHHHH
Confidence 9999999988 4 689999999998888 899999999999987
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.6e-07 Score=94.63 Aligned_cols=119 Identities=13% Similarity=0.069 Sum_probs=109.9
Q ss_pred CCChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 026637 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME 80 (235)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~ 80 (235)
.|+.++++...+++.|..|....++..+|..+...|++++|++..+++++++|+++.+...++.++..+|++++|+..++
T Consensus 28 ~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~ 107 (765)
T PRK10049 28 AGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAK 107 (765)
T ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 38899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HchhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchhh
Q 026637 81 ECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE 126 (235)
Q Consensus 81 ~a~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~~ 126 (235)
+.....|..+ . +-.+|..+...| ++++|+..|++.+...
T Consensus 108 ~~l~~~P~~~-----~-~~~la~~l~~~g-~~~~Al~~l~~al~~~ 146 (765)
T PRK10049 108 QLVSGAPDKA-----N-LLALAYVYKRAG-RHWDELRAMTQALPRA 146 (765)
T ss_pred HHHHhCCCCH-----H-HHHHHHHHHHCC-CHHHHHHHHHHHHHhC
Confidence 9999988753 2 334888888888 9999999999999873
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.79 E-value=2.4e-07 Score=79.23 Aligned_cols=107 Identities=13% Similarity=0.097 Sum_probs=91.1
Q ss_pred CCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHH---HHHHHHHHHHHcCCHHHHHHHHHHchhhhccCCcc
Q 026637 16 PYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCW---SQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSF 92 (235)
Q Consensus 16 ~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~daw---A~halahvl~~~Gr~~egi~~l~~a~~~w~~~~~~ 92 (235)
|..+..+..+...|..+...|++++|....++++.++|++++ ++..+|.++..+|++++|+..+++..+..|+.+..
T Consensus 27 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~ 106 (235)
T TIGR03302 27 PVEEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDA 106 (235)
T ss_pred CcccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCch
Confidence 566777888899999999999999999999999999999985 66889999999999999999999999999986533
Q ss_pred hhHHHHHHHHHHHHhC--------CCCHHHHHHHHHhhchh
Q 026637 93 MYTHNWWHVALCYLEG--------HSPMRKVLEIYDNHIWK 125 (235)
Q Consensus 93 l~~H~~WHlAL~~le~--------G~~~deAl~~yd~~i~~ 125 (235)
-. .++-++.+++.. | ++++|++.|++.+..
T Consensus 107 ~~--a~~~~g~~~~~~~~~~~~~~~-~~~~A~~~~~~~~~~ 144 (235)
T TIGR03302 107 DY--AYYLRGLSNYNQIDRVDRDQT-AAREAFEAFQELIRR 144 (235)
T ss_pred HH--HHHHHHHHHHHhcccccCCHH-HHHHHHHHHHHHHHH
Confidence 12 234488888765 7 899999999987653
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=98.79 E-value=1e-07 Score=65.93 Aligned_cols=96 Identities=17% Similarity=0.188 Sum_probs=84.2
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhhccCCcchhHHHHHHHHH
Q 026637 24 IFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVAL 103 (235)
Q Consensus 24 ~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~~a~~~w~~~~~~l~~H~~WHlAL 103 (235)
++..+|..+.+.|++++|+...++++.++|+++.++..++.++..+|++++|+..+++.....|..+ -.++.++.
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~~~ 76 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNA-----KAYYNLGL 76 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcch-----hHHHHHHH
Confidence 3556788888999999999999999999999999999999999999999999999999988877743 34567899
Q ss_pred HHHhCCCCHHHHHHHHHhhchh
Q 026637 104 CYLEGHSPMRKVLEIYDNHIWK 125 (235)
Q Consensus 104 ~~le~G~~~deAl~~yd~~i~~ 125 (235)
+++..| ++++|...+.+.+..
T Consensus 77 ~~~~~~-~~~~a~~~~~~~~~~ 97 (100)
T cd00189 77 AYYKLG-KYEEALEAYEKALEL 97 (100)
T ss_pred HHHHHH-hHHHHHHHHHHHHcc
Confidence 999998 899999999887654
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.79 E-value=2.3e-07 Score=82.11 Aligned_cols=136 Identities=13% Similarity=0.129 Sum_probs=115.9
Q ss_pred CCChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 026637 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME 80 (235)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~ 80 (235)
.|+.+..+....+.+-.+|.+.+++..++-.+..+|+|.+|+..+++|..++|+|+-++..+|-++...||+++|...+.
T Consensus 79 ~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~ 158 (257)
T COG5010 79 RGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYR 158 (257)
T ss_pred cccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccChhHHHHHHH
Confidence 37888888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HchhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchhhhcCCCCCchHhHhHHHHHHHHH
Q 026637 81 ECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNALGLLLRV 148 (235)
Q Consensus 81 ~a~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~~~~~~~~~~~~~~~da~sLL~Rl 148 (235)
++...-++.|.. -+ +++..++-.| |++.|.+++....... +.+ . .+.-...|+|.+
T Consensus 159 qAl~L~~~~p~~---~n--Nlgms~~L~g-d~~~A~~lll~a~l~~--~ad---~-~v~~NLAl~~~~ 214 (257)
T COG5010 159 QALELAPNEPSI---AN--NLGMSLLLRG-DLEDAETLLLPAYLSP--AAD---S-RVRQNLALVVGL 214 (257)
T ss_pred HHHHhccCCchh---hh--hHHHHHHHcC-CHHHHHHHHHHHHhCC--CCc---h-HHHHHHHHHHhh
Confidence 999999997743 23 3888888887 9999999998877663 222 2 234556666554
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=98.77 E-value=3.3e-08 Score=69.16 Aligned_cols=68 Identities=13% Similarity=0.088 Sum_probs=63.9
Q ss_pred CChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHchhhhc
Q 026637 20 QEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDC-CFKEAVQFMEECSSTWS 87 (235)
Q Consensus 20 ~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~G-r~~egi~~l~~a~~~w~ 87 (235)
+++..+..+|..+...|+|++|+..+.+|++++|+++.++..+|.++..+| ++++++..++++....|
T Consensus 1 e~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 1 ENAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp TSHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 357788999999999999999999999999999999999999999999999 79999999999988765
|
... |
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=98.77 E-value=1.6e-07 Score=77.06 Aligned_cols=116 Identities=12% Similarity=0.109 Sum_probs=91.3
Q ss_pred hhhHHHHHHhhcCCCCCC--hhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCC---CHHHHHHHHHHHHHcCCHHHHHHH
Q 026637 4 PDLCFDIIHQVLPYNQQE--DFIFGILAFSLLELGQMSDAEEAAKKGLKINKH---DCWSQHALCHVLQHDCCFKEAVQF 78 (235)
Q Consensus 4 ~~~al~~~~ral~~~p~~--~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~---dawA~halahvl~~~Gr~~egi~~ 78 (235)
...+.+.+.+.+...+.+ .+.+..+|..+..+|++++|+..+++|+.+.|+ .+.++.++|.++...|++++|+..
T Consensus 15 ~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~ 94 (168)
T CHL00033 15 FTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEY 94 (168)
T ss_pred cccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHH
Confidence 445666666666666654 577899999999999999999999999999887 457999999999999999999999
Q ss_pred HHHchhhhccCCcchhHHHHHHHHHHHH-------hCCCCHHHHHHHHHhhchh
Q 026637 79 MEECSSTWSSCSSFMYTHNWWHVALCYL-------EGHSPMRKVLEIYDNHIWK 125 (235)
Q Consensus 79 l~~a~~~w~~~~~~l~~H~~WHlAL~~l-------e~G~~~deAl~~yd~~i~~ 125 (235)
++++....|..+ ..|+ +++..+. ..| ++++|+..|++.+..
T Consensus 95 ~~~Al~~~~~~~---~~~~--~la~i~~~~~~~~~~~g-~~~~A~~~~~~a~~~ 142 (168)
T CHL00033 95 YFQALERNPFLP---QALN--NMAVICHYRGEQAIEQG-DSEIAEAWFDQAAEY 142 (168)
T ss_pred HHHHHHhCcCcH---HHHH--HHHHHHHHhhHHHHHcc-cHHHHHHHHHHHHHH
Confidence 999999876643 3343 2555554 887 888777777665443
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.77 E-value=6.3e-08 Score=92.16 Aligned_cols=118 Identities=15% Similarity=0.231 Sum_probs=108.0
Q ss_pred ChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc
Q 026637 3 RPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEEC 82 (235)
Q Consensus 3 ~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~~a 82 (235)
+..++...+..|..++|.+|.++.-.|-.+.-.++|++|.+-+++|++|+|.++.++-.+|-+++.++++++....++++
T Consensus 375 ~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~ 454 (606)
T KOG0547|consen 375 QSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEA 454 (606)
T ss_pred ccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56778888999999999999888888888888899999999999999999999999999999999999999999999999
Q ss_pred hhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchhh
Q 026637 83 SSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE 126 (235)
Q Consensus 83 ~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~~ 126 (235)
....|+|| .+-+. .|-.+.+++ ++|.|++.||.+|..+
T Consensus 455 kkkFP~~~---Evy~~--fAeiLtDqq-qFd~A~k~YD~ai~LE 492 (606)
T KOG0547|consen 455 KKKFPNCP---EVYNL--FAEILTDQQ-QFDKAVKQYDKAIELE 492 (606)
T ss_pred HHhCCCCc---hHHHH--HHHHHhhHH-hHHHHHHHHHHHHhhc
Confidence 99999998 33444 788888987 9999999999999874
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=98.76 E-value=2.3e-08 Score=69.38 Aligned_cols=63 Identities=21% Similarity=0.200 Sum_probs=57.7
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhhccC
Q 026637 27 ILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSC 89 (235)
Q Consensus 27 ~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~~a~~~w~~~ 89 (235)
.+|..+.+.|++++|++.++++++.+|+++.++..+|.++..+|++++|+..+++.....|+.
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 467789999999999999999999999999999999999999999999999999999988773
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=98.69 E-value=1.5e-07 Score=65.06 Aligned_cols=87 Identities=17% Similarity=0.184 Sum_probs=81.6
Q ss_pred CCChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 026637 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME 80 (235)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~ 80 (235)
.|+.+++....++++...|.++.++..+|..+...|++++|++...+++.++|.+..++..++.++...|+++++...++
T Consensus 13 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 92 (100)
T cd00189 13 LGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYEEALEAYE 92 (100)
T ss_pred HhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhHHHHHHHHH
Confidence 37889999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred Hchhhhc
Q 026637 81 ECSSTWS 87 (235)
Q Consensus 81 ~a~~~w~ 87 (235)
+..+..|
T Consensus 93 ~~~~~~~ 99 (100)
T cd00189 93 KALELDP 99 (100)
T ss_pred HHHccCC
Confidence 8876654
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.68 E-value=8.1e-08 Score=86.52 Aligned_cols=87 Identities=14% Similarity=0.105 Sum_probs=85.2
Q ss_pred CChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 026637 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEE 81 (235)
Q Consensus 2 G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~~ 81 (235)
+++.+|++...+|+.++|.++-++.+.|-++.+.|.|+.|.+-++.||.++|+..-++-.||.++.-+|++++|++.+.+
T Consensus 95 ~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A~~aykK 174 (304)
T KOG0553|consen 95 KDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEAIEAYKK 174 (304)
T ss_pred hhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHHHHHHHh
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhcc
Q 026637 82 CSSTWSS 88 (235)
Q Consensus 82 a~~~w~~ 88 (235)
+....|+
T Consensus 175 aLeldP~ 181 (304)
T KOG0553|consen 175 ALELDPD 181 (304)
T ss_pred hhccCCC
Confidence 9999988
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.67 E-value=5.4e-07 Score=85.58 Aligned_cols=150 Identities=15% Similarity=0.075 Sum_probs=124.4
Q ss_pred CCChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 026637 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME 80 (235)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~ 80 (235)
.|..+.++......+...|+++|+.-+.+-.+.+.|+..+|.+.+++++++.|+.++..-++|.++...|++.||+..+.
T Consensus 319 ~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L~ 398 (484)
T COG4783 319 AGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILN 398 (484)
T ss_pred hcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHHH
Confidence 37788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HchhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchhhhcCCCCCchHhHhHHHHHHHHHHh-cCccccccc
Q 026637 81 ECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNALGLLLRVYV-RGELDVFGN 159 (235)
Q Consensus 81 ~a~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~~~~~~~~~~~~~~~da~sLL~Rl~l-~G~~~~~g~ 159 (235)
+.....|.+|.+ +. =+|-.|-++| +..++...+.....-. + .+-.|..+|-|..= .+.+. .
T Consensus 399 ~~~~~~p~dp~~---w~--~LAqay~~~g-~~~~a~~A~AE~~~~~----G-----~~~~A~~~l~~A~~~~~~~~---~ 460 (484)
T COG4783 399 RYLFNDPEDPNG---WD--LLAQAYAELG-NRAEALLARAEGYALA----G-----RLEQAIIFLMRASQQVKLGF---P 460 (484)
T ss_pred HHhhcCCCCchH---HH--HHHHHHHHhC-chHHHHHHHHHHHHhC----C-----CHHHHHHHHHHHHHhccCCc---H
Confidence 999999998732 22 3899998998 8899999887766652 1 14577788877764 33432 3
Q ss_pred chHHHHHHH
Q 026637 160 RLKVLADCV 168 (235)
Q Consensus 160 rw~~la~~~ 168 (235)
.|..+-+..
T Consensus 461 ~~aR~dari 469 (484)
T COG4783 461 DWARADARI 469 (484)
T ss_pred HHHHHHHHH
Confidence 455554443
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.65 E-value=1.3e-06 Score=70.33 Aligned_cols=115 Identities=17% Similarity=0.165 Sum_probs=94.7
Q ss_pred CChhhHHHHHHhhcCCCCCChh---HHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHH
Q 026637 2 GRPDLCFDIIHQVLPYNQQEDF---IFGILAFSLLELGQMSDAEEAAKKGLKINKHD---CWSQHALCHVLQHDCCFKEA 75 (235)
Q Consensus 2 G~~~~al~~~~ral~~~p~~~~---~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~d---awA~halahvl~~~Gr~~eg 75 (235)
|+...+...+++.+..+|+.+| +.-.+|-.+.+.|++++|.+..+++++-.|++ +.+...++.++..+|++++|
T Consensus 25 ~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~A 104 (145)
T PF09976_consen 25 GDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEA 104 (145)
T ss_pred CCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 5667777778888888898854 55668889999999999999999999988877 45888899999999999999
Q ss_pred HHHHHHchhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhc
Q 026637 76 VQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHI 123 (235)
Q Consensus 76 i~~l~~a~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i 123 (235)
+..++... . +.+ ..-.+.-.|..++..| ++++|+..|+++|
T Consensus 105 l~~L~~~~-~----~~~-~~~~~~~~Gdi~~~~g-~~~~A~~~y~~Al 145 (145)
T PF09976_consen 105 LATLQQIP-D----EAF-KALAAELLGDIYLAQG-DYDEARAAYQKAL 145 (145)
T ss_pred HHHHHhcc-C----cch-HHHHHHHHHHHHHHCC-CHHHHHHHHHHhC
Confidence 99997632 1 222 3345667999999998 9999999998765
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=98.65 E-value=3e-07 Score=89.23 Aligned_cols=112 Identities=13% Similarity=0.080 Sum_probs=91.6
Q ss_pred hhHHHHHHhhcC--CCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc
Q 026637 5 DLCFDIIHQVLP--YNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEEC 82 (235)
Q Consensus 5 ~~al~~~~ral~--~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~~a 82 (235)
+.+.+.+++++. .+|.++.++..+|+.....|++++|++.++||+++|| ++.++..+|.+++++|++++|++.++++
T Consensus 401 ~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A 479 (517)
T PRK10153 401 AALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTA 479 (517)
T ss_pred HHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 456666777544 5788889999999999999999999999999999999 5899999999999999999999999999
Q ss_pred hhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026637 83 SSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 125 (235)
Q Consensus 83 ~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~ 125 (235)
.+..|.+| +.+||+-..||- +.+...-...+.+.+
T Consensus 480 ~~L~P~~p----t~~~~~~~~f~~----~~~~~~~~~~~~~~~ 514 (517)
T PRK10153 480 FNLRPGEN----TLYWIENLVFQT----SVETVVPYLYRFLAP 514 (517)
T ss_pred HhcCCCCc----hHHHHHhccccc----cHHHHHHHHHhccCc
Confidence 99999987 457777777773 344444434444443
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=98.65 E-value=2e-07 Score=90.54 Aligned_cols=115 Identities=10% Similarity=-0.021 Sum_probs=99.6
Q ss_pred hhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhC--------CHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHH
Q 026637 4 PDLCFDIIHQVLPYNQQEDFIFGILAFSLLELG--------QMSDAEEAAKKGLKI--NKHDCWSQHALCHVLQHDCCFK 73 (235)
Q Consensus 4 ~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g--------~~~~Ae~~arrAL~L--~P~dawA~halahvl~~~Gr~~ 73 (235)
..++++.++||+..+|++++++..+++++.... ++.++.+.+++++++ .|.++.++.+++.+...+|+++
T Consensus 358 ~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~ 437 (517)
T PRK10153 358 LNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTD 437 (517)
T ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHH
Confidence 568999999999999999999999999776642 355677888888775 8889999999999999999999
Q ss_pred HHHHHHHHchhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026637 74 EAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 125 (235)
Q Consensus 74 egi~~l~~a~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~ 125 (235)
+|.+.++++....|+ . ..|+. +|.++...| ++++|++.|.+++..
T Consensus 438 ~A~~~l~rAl~L~ps---~-~a~~~--lG~~~~~~G-~~~eA~~~~~~A~~L 482 (517)
T PRK10153 438 EAYQAINKAIDLEMS---W-LNYVL--LGKVYELKG-DNRLAADAYSTAFNL 482 (517)
T ss_pred HHHHHHHHHHHcCCC---H-HHHHH--HHHHHHHcC-CHHHHHHHHHHHHhc
Confidence 999999999999864 2 36765 899998888 999999999999877
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=98.63 E-value=4.1e-07 Score=85.16 Aligned_cols=118 Identities=14% Similarity=0.050 Sum_probs=99.9
Q ss_pred CCChhhHHHHHHhhcCCCCCChhH--HHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCH--HHHHHHHHHHHHcCCHHHHH
Q 026637 1 MGRPDLCFDIIHQVLPYNQQEDFI--FGILAFSLLELGQMSDAEEAAKKGLKINKHDC--WSQHALCHVLQHDCCFKEAV 76 (235)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~--~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~da--wA~halahvl~~~Gr~~egi 76 (235)
.|+.++++..+++++...|++... ..+........++.+.+++..+++++.+|+|+ ..+.++|.+++.+|++++|.
T Consensus 276 ~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~ 355 (409)
T TIGR00540 276 CDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAA 355 (409)
T ss_pred CCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHH
Confidence 489999999999999998887743 24455555667889999999999999999999 99999999999999999999
Q ss_pred HHHHH--chhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026637 77 QFMEE--CSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 125 (235)
Q Consensus 77 ~~l~~--a~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~ 125 (235)
+++++ .....|+ + ....|+|..+...| +.++|.++|++.+.+
T Consensus 356 ~~le~a~a~~~~p~-~-----~~~~~La~ll~~~g-~~~~A~~~~~~~l~~ 399 (409)
T TIGR00540 356 DAFKNVAACKEQLD-A-----NDLAMAADAFDQAG-DKAEAAAMRQDSLGL 399 (409)
T ss_pred HHHHHhHHhhcCCC-H-----HHHHHHHHHHHHcC-CHHHHHHHHHHHHHH
Confidence 99994 5556555 2 24559999999998 899999999987766
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=98.63 E-value=3.6e-07 Score=68.90 Aligned_cols=99 Identities=13% Similarity=0.058 Sum_probs=76.1
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHchhhhccCCcchhHHHHHH
Q 026637 24 IFGILAFSLLELGQMSDAEEAAKKGLKINKHD---CWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWH 100 (235)
Q Consensus 24 ~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~d---awA~halahvl~~~Gr~~egi~~l~~a~~~w~~~~~~l~~H~~WH 100 (235)
.+...|..+.+.|++++|++.+++++..+|++ +.+...+|-++...|++++|+..+++.....|..+.. .-.+..
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~--~~~~~~ 81 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKA--PDALLK 81 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcc--cHHHHH
Confidence 45566777888888888888888888888877 5677888888888888888888888888877764322 223445
Q ss_pred HHHHHHhCCCCHHHHHHHHHhhchh
Q 026637 101 VALCYLEGHSPMRKVLEIYDNHIWK 125 (235)
Q Consensus 101 lAL~~le~G~~~deAl~~yd~~i~~ 125 (235)
+|.++...| ++++|+..|++.+..
T Consensus 82 ~~~~~~~~~-~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 82 LGMSLQELG-DKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHHHhC-ChHHHHHHHHHHHHH
Confidence 788888887 888888888887764
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=98.63 E-value=2.9e-07 Score=85.16 Aligned_cols=93 Identities=8% Similarity=-0.080 Sum_probs=82.5
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhhccCCcchhHHHHHHHHHHHHh
Q 026637 28 LAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLE 107 (235)
Q Consensus 28 ~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~~a~~~w~~~~~~l~~H~~WHlAL~~le 107 (235)
.|-.+...|+|++|+..+++||+++|+++.++..+|.++...|++++|+..++++....|..+ ..++ .+|.+++.
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~---~a~~--~lg~~~~~ 82 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLA---KAYL--RKGTACMK 82 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCH---HHHH--HHHHHHHH
Confidence 355566889999999999999999999999999999999999999999999999999987743 2333 58999999
Q ss_pred CCCCHHHHHHHHHhhchhh
Q 026637 108 GHSPMRKVLEIYDNHIWKE 126 (235)
Q Consensus 108 ~G~~~deAl~~yd~~i~~~ 126 (235)
.| +|++|+..|++.+...
T Consensus 83 lg-~~~eA~~~~~~al~l~ 100 (356)
T PLN03088 83 LE-EYQTAKAALEKGASLA 100 (356)
T ss_pred hC-CHHHHHHHHHHHHHhC
Confidence 98 9999999999999773
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=98.63 E-value=1.1e-06 Score=66.25 Aligned_cols=89 Identities=13% Similarity=0.001 Sum_probs=82.4
Q ss_pred CCChhhHHHHHHhhcCCCCCC---hhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHH
Q 026637 1 MGRPDLCFDIIHQVLPYNQQE---DFIFGILAFSLLELGQMSDAEEAAKKGLKINKHD---CWSQHALCHVLQHDCCFKE 74 (235)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~---~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~d---awA~halahvl~~~Gr~~e 74 (235)
.|+.+++...+++++..+|++ +.++..+|.++.+.|++++|....++++..+|++ ++++..++.++...|+.++
T Consensus 15 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 94 (119)
T TIGR02795 15 AGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQELGDKEK 94 (119)
T ss_pred cCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHHHhCChHH
Confidence 488999999999999988876 4688899999999999999999999999999986 7899999999999999999
Q ss_pred HHHHHHHchhhhccC
Q 026637 75 AVQFMEECSSTWSSC 89 (235)
Q Consensus 75 gi~~l~~a~~~w~~~ 89 (235)
++..+++.....|+.
T Consensus 95 A~~~~~~~~~~~p~~ 109 (119)
T TIGR02795 95 AKATLQQVIKRYPGS 109 (119)
T ss_pred HHHHHHHHHHHCcCC
Confidence 999999999998874
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.61 E-value=5.4e-07 Score=78.84 Aligned_cols=97 Identities=12% Similarity=0.031 Sum_probs=87.9
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhhccCCcchhHHHHHHHHH
Q 026637 24 IFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVAL 103 (235)
Q Consensus 24 ~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~~a~~~w~~~~~~l~~H~~WHlAL 103 (235)
+.--+|.++.+.|++..|.+..++||+.+|++.-+++.+||+++..|..+-+-+-++++....|+... .+|+ .+-
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~Gd---VLNN--YG~ 111 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGD---VLNN--YGA 111 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccc---hhhh--hhH
Confidence 55668889999999999999999999999999999999999999999999999999999999988542 4664 777
Q ss_pred HHHhCCCCHHHHHHHHHhhchhh
Q 026637 104 CYLEGHSPMRKVLEIYDNHIWKE 126 (235)
Q Consensus 104 ~~le~G~~~deAl~~yd~~i~~~ 126 (235)
|+-..| ++++|...|++++..+
T Consensus 112 FLC~qg-~~~eA~q~F~~Al~~P 133 (250)
T COG3063 112 FLCAQG-RPEEAMQQFERALADP 133 (250)
T ss_pred HHHhCC-ChHHHHHHHHHHHhCC
Confidence 888888 9999999999999874
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=98.61 E-value=2.3e-07 Score=67.76 Aligned_cols=81 Identities=14% Similarity=0.182 Sum_probs=65.6
Q ss_pred HhCCHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHchhhhccCCcchhHHHHHHHHHHHHhCCCC
Q 026637 34 ELGQMSDAEEAAKKGLKINKH--DCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSP 111 (235)
Q Consensus 34 e~g~~~~Ae~~arrAL~L~P~--dawA~halahvl~~~Gr~~egi~~l~~a~~~w~~~~~~l~~H~~WHlAL~~le~G~~ 111 (235)
++|+|++|+..+++.++.+|+ +.-....+|.++..+|++++|+.++++ ....+.. . -..+-+|.+++++| +
T Consensus 1 ~~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~---~--~~~~l~a~~~~~l~-~ 73 (84)
T PF12895_consen 1 DQGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSN---P--DIHYLLARCLLKLG-K 73 (84)
T ss_dssp HTT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCH---H--HHHHHHHHHHHHTT--
T ss_pred CCccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCC---H--HHHHHHHHHHHHhC-C
Confidence 478999999999999999996 466677789999999999999999998 5554431 1 23445899999998 9
Q ss_pred HHHHHHHHHh
Q 026637 112 MRKVLEIYDN 121 (235)
Q Consensus 112 ~deAl~~yd~ 121 (235)
+++|++.|++
T Consensus 74 y~eAi~~l~~ 83 (84)
T PF12895_consen 74 YEEAIKALEK 83 (84)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhc
Confidence 9999999976
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=98.56 E-value=3.1e-06 Score=69.91 Aligned_cols=100 Identities=17% Similarity=0.265 Sum_probs=81.5
Q ss_pred hHHHHHHhhcCCCC--CChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHH
Q 026637 6 LCFDIIHQVLPYNQ--QEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHD---CWSQHALCHVLQHDCCFKEAVQFME 80 (235)
Q Consensus 6 ~al~~~~ral~~~p--~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~d---awA~halahvl~~~Gr~~egi~~l~ 80 (235)
-|-+.+.+.++..+ .....+..+|..+...|++++|...++++++++|+. +.+++.+|.++...|++++|+..++
T Consensus 17 ~~~~~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 96 (172)
T PRK02603 17 VMADLILKILPINKKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYH 96 (172)
T ss_pred HHHHHHHHHcccccHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 45566777777554 566788899999999999999999999999998874 5799999999999999999999999
Q ss_pred HchhhhccCCcchhHHHHHHHHHHHHhCCCC
Q 026637 81 ECSSTWSSCSSFMYTHNWWHVALCYLEGHSP 111 (235)
Q Consensus 81 ~a~~~w~~~~~~l~~H~~WHlAL~~le~G~~ 111 (235)
++....|..+ ..+. .++.++...| +
T Consensus 97 ~al~~~p~~~---~~~~--~lg~~~~~~g-~ 121 (172)
T PRK02603 97 QALELNPKQP---SALN--NIAVIYHKRG-E 121 (172)
T ss_pred HHHHhCcccH---HHHH--HHHHHHHHcC-C
Confidence 9999877642 2333 4777877765 5
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=98.54 E-value=1.2e-05 Score=75.24 Aligned_cols=192 Identities=10% Similarity=0.026 Sum_probs=137.7
Q ss_pred CChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHH-HHHHHHHHHHHcCCHHHHHHHHH
Q 026637 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCW-SQHALCHVLQHDCCFKEAVQFME 80 (235)
Q Consensus 2 G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~daw-A~halahvl~~~Gr~~egi~~l~ 80 (235)
||++.++..+.++....|+....+-..|-+..+.|++++|.+...++.+..|++.- +.-+.+.++..+|+++++...++
T Consensus 98 g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~ 177 (409)
T TIGR00540 98 GDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGVD 177 (409)
T ss_pred CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 89999999999999988876666667788999999999999999999999999974 55567999999999999999999
Q ss_pred HchhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchhhhcCCCCCchHhHhHHHHHHHHHHhcCcccccccc
Q 026637 81 ECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNALGLLLRVYVRGELDVFGNR 160 (235)
Q Consensus 81 ~a~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~~~~~~~~~~~~~~~da~sLL~Rl~l~G~~~~~g~r 160 (235)
+..+..|+.+. .... ++..++..| ++++|++++.+..... .....+..+.....|.=.+.... ....
T Consensus 178 ~l~~~~P~~~~---~l~l--l~~~~~~~~-d~~~a~~~l~~l~k~~-----~~~~~~~~~l~~~a~~~~l~~~~--~~~~ 244 (409)
T TIGR00540 178 KLLEMAPRHKE---VLKL--AEEAYIRSG-AWQALDDIIDNMAKAG-----LFDDEEFADLEQKAEIGLLDEAM--ADEG 244 (409)
T ss_pred HHHHhCCCCHH---HHHH--HHHHHHHHh-hHHHHHHHHHHHHHcC-----CCCHHHHHHHHHHHHHHHHHHHH--HhcC
Confidence 99999988652 2333 888999998 9999999997766542 11233333433344432232111 1234
Q ss_pred hHHHHHHHHhhhcc-hhcchhhHHHHHHHhcCCCchHHHHHHHHHHH
Q 026637 161 LKVLADCVADQANW-YLECHLDLLILWALANTGEVSKAEDLLKGLKS 206 (235)
Q Consensus 161 w~~la~~~~~~~~~-~~~~F~d~H~~~al~~ag~~~~~~~ll~~~~~ 206 (235)
.+.+...|...+.. ...+=..+.++-.+...|+.+.+.++++..-+
T Consensus 245 ~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~ 291 (409)
T TIGR00540 245 IDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLK 291 (409)
T ss_pred HHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHh
Confidence 56666666654321 01111244456678888998888877766554
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=98.53 E-value=2.3e-07 Score=64.27 Aligned_cols=56 Identities=16% Similarity=0.208 Sum_probs=52.4
Q ss_pred CCChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCH
Q 026637 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDC 56 (235)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~da 56 (235)
.|++++|+..+++++..+|+++.++..+|.++...|++++|++.++++++++|+||
T Consensus 10 ~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 10 QGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp CTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred cCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 48899999999999999999999999999999999999999999999999999986
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=98.52 E-value=4.2e-07 Score=86.20 Aligned_cols=69 Identities=14% Similarity=0.008 Sum_probs=66.0
Q ss_pred CCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHchhh
Q 026637 17 YNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDC---WSQHALCHVLQHDCCFKEAVQFMEECSST 85 (235)
Q Consensus 17 ~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~da---wA~halahvl~~~Gr~~egi~~l~~a~~~ 85 (235)
.+|+++..+.++|.+|.+.|+|++|++.+++||+++|+++ +++.++|-+|..+|++++|++.+++++..
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4789999999999999999999999999999999999999 45999999999999999999999999886
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=98.51 E-value=1e-06 Score=72.36 Aligned_cols=82 Identities=10% Similarity=0.052 Sum_probs=69.5
Q ss_pred CCChhhHHHHHHhhcCCCCC---ChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH-------HcC
Q 026637 1 MGRPDLCFDIIHQVLPYNQQ---EDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQ-------HDC 70 (235)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~---~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~-------~~G 70 (235)
+|++++++....+++...|+ .++++..+|.++...|++++|++.+++|+.++|..+.++..++.++. ..|
T Consensus 48 ~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g 127 (168)
T CHL00033 48 EGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVICHYRGEQAIEQG 127 (168)
T ss_pred cCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcc
Confidence 48999999999999887654 45789999999999999999999999999999999999999999999 555
Q ss_pred CHHHHHHHHHHc
Q 026637 71 CFKEAVQFMEEC 82 (235)
Q Consensus 71 r~~egi~~l~~a 82 (235)
++++++..++++
T Consensus 128 ~~~~A~~~~~~a 139 (168)
T CHL00033 128 DSEIAEAWFDQA 139 (168)
T ss_pred cHHHHHHHHHHH
Confidence 555444444433
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=98.49 E-value=8.8e-07 Score=73.44 Aligned_cols=86 Identities=8% Similarity=-0.105 Sum_probs=81.9
Q ss_pred CCChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 026637 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME 80 (235)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~ 80 (235)
.|+.++|....+-+.-.+|.+...+..+|.++...|+|.+|+..+.+|+.|+|+||.++...|-++...|+.++|..-++
T Consensus 48 ~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~lG~~~~A~~aF~ 127 (157)
T PRK15363 48 VKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLACDNVCYAIKALK 127 (157)
T ss_pred CCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHH
Confidence 38999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Hchhhh
Q 026637 81 ECSSTW 86 (235)
Q Consensus 81 ~a~~~w 86 (235)
.++..-
T Consensus 128 ~Ai~~~ 133 (157)
T PRK15363 128 AVVRIC 133 (157)
T ss_pred HHHHHh
Confidence 887654
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.48 E-value=1.5e-06 Score=82.52 Aligned_cols=119 Identities=13% Similarity=0.183 Sum_probs=112.0
Q ss_pred CChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 026637 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEE 81 (235)
Q Consensus 2 G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~~ 81 (235)
++++.+...++|||.++|.+.-++...|--++|+.....|....|+|+++||.|--|+..+|.+++..+=+.=++=++++
T Consensus 344 ~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqk 423 (559)
T KOG1155|consen 344 SEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQK 423 (559)
T ss_pred HhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHH
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchhh
Q 026637 82 CSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE 126 (235)
Q Consensus 82 a~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~~ 126 (235)
+...-|+++ .+|=-++-+|...+ +.++|++.|.++|...
T Consensus 424 A~~~kPnDs-----Rlw~aLG~CY~kl~-~~~eAiKCykrai~~~ 462 (559)
T KOG1155|consen 424 ALELKPNDS-----RLWVALGECYEKLN-RLEEAIKCYKRAILLG 462 (559)
T ss_pred HHhcCCCch-----HHHHHHHHHHHHhc-cHHHHHHHHHHHHhcc
Confidence 999999876 45666999999997 9999999999999874
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.44 E-value=1e-06 Score=86.02 Aligned_cols=117 Identities=13% Similarity=0.001 Sum_probs=105.3
Q ss_pred ChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc
Q 026637 3 RPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEEC 82 (235)
Q Consensus 3 ~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~~a 82 (235)
.++.+..+...||..+|.+.-++.=+|.++..+++++.||-.+++|+++||.+.-..-.++-+++..|+.++|+.+++++
T Consensus 470 e~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A 549 (638)
T KOG1126|consen 470 EFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKA 549 (638)
T ss_pred HHHhHHHHHHhhhcCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHH
Confidence 46789999999999999988888888889999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026637 83 SSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 125 (235)
Q Consensus 83 ~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~ 125 (235)
....|..| +--.|.|..++.++ +|++|+..++....-
T Consensus 550 ~~ld~kn~-----l~~~~~~~il~~~~-~~~eal~~LEeLk~~ 586 (638)
T KOG1126|consen 550 IHLDPKNP-----LCKYHRASILFSLG-RYVEALQELEELKEL 586 (638)
T ss_pred HhcCCCCc-----hhHHHHHHHHHhhc-chHHHHHHHHHHHHh
Confidence 99999865 33347899999998 999999999875443
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=98.41 E-value=7.2e-06 Score=65.10 Aligned_cols=100 Identities=16% Similarity=0.100 Sum_probs=84.3
Q ss_pred hHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHchhhhccCCcchhHHHHH
Q 026637 23 FIFGILAFSLLELGQMSDAEEAAKKGLKINKHD---CWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWW 99 (235)
Q Consensus 23 ~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~d---awA~halahvl~~~Gr~~egi~~l~~a~~~w~~~~~~l~~H~~W 99 (235)
.++...|.++-..|+.++|+..+++|++..+.+ .-++..++..+...|++++++..+++.....|+++..-....
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~-- 79 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRV-- 79 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHH--
Confidence 467788999999999999999999999987666 568899999999999999999999999998887442222233
Q ss_pred HHHHHHHhCCCCHHHHHHHHHhhchh
Q 026637 100 HVALCYLEGHSPMRKVLEIYDNHIWK 125 (235)
Q Consensus 100 HlAL~~le~G~~~deAl~~yd~~i~~ 125 (235)
.+|+.+...| +.+||++++=..+.+
T Consensus 80 f~Al~L~~~g-r~~eAl~~~l~~la~ 104 (120)
T PF12688_consen 80 FLALALYNLG-RPKEALEWLLEALAE 104 (120)
T ss_pred HHHHHHHHCC-CHHHHHHHHHHHHHH
Confidence 4889988998 999999999777766
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=98.37 E-value=1.4e-06 Score=60.50 Aligned_cols=58 Identities=21% Similarity=0.213 Sum_probs=53.4
Q ss_pred HHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhhccC
Q 026637 32 LLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSC 89 (235)
Q Consensus 32 L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~~a~~~w~~~ 89 (235)
|.+.|+|++|++.+++++..+|+++.+...++.++..+|++++|...+++.....|+.
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~ 58 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDN 58 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTH
T ss_pred ChhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCH
Confidence 4688999999999999999999999999999999999999999999999999888773
|
... |
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=98.33 E-value=1.4e-05 Score=71.42 Aligned_cols=102 Identities=13% Similarity=0.030 Sum_probs=88.6
Q ss_pred hhHHHHHHHHH-HHhCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHchhhhccCCcchhHHH
Q 026637 22 DFIFGILAFSL-LELGQMSDAEEAAKKGLKINKHD---CWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHN 97 (235)
Q Consensus 22 ~~~~g~~Af~L-~e~g~~~~Ae~~arrAL~L~P~d---awA~halahvl~~~Gr~~egi~~l~~a~~~w~~~~~~l~~H~ 97 (235)
.-.....|+.+ ...|+|++|+..+++.+...|++ +.++..+|-+++.+|++++|+..+++....+|..|. ..-.
T Consensus 142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~--~~dA 219 (263)
T PRK10803 142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPK--AADA 219 (263)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcc--hhHH
Confidence 35667778877 56799999999999999999999 579999999999999999999999999999998553 2445
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHhhchhh
Q 026637 98 WWHVALCYLEGHSPMRKVLEIYDNHIWKE 126 (235)
Q Consensus 98 ~WHlAL~~le~G~~~deAl~~yd~~i~~~ 126 (235)
+..+|.++.+.| ++++|.++|++.|...
T Consensus 220 l~klg~~~~~~g-~~~~A~~~~~~vi~~y 247 (263)
T PRK10803 220 MFKVGVIMQDKG-DTAKAKAVYQQVIKKY 247 (263)
T ss_pred HHHHHHHHHHcC-CHHHHHHHHHHHHHHC
Confidence 667999999998 9999999999988763
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=98.32 E-value=1.2e-05 Score=82.11 Aligned_cols=116 Identities=11% Similarity=0.001 Sum_probs=93.7
Q ss_pred CCChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 026637 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME 80 (235)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~ 80 (235)
.|+.++++..++|++.-.|...+.+-.+|-.+...|+|++|+++.+++++++|+++.++..++.++...|+.++++..++
T Consensus 81 ~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~ 160 (822)
T PRK14574 81 AGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQAT 160 (822)
T ss_pred cCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 37888999999999933344444555557799999999999999999999999999999999999999999999999999
Q ss_pred HchhhhccCCcchhHHHHHHHHHHHHh--CCCCHHHHHHHHHhhchh
Q 026637 81 ECSSTWSSCSSFMYTHNWWHVALCYLE--GHSPMRKVLEIYDNHIWK 125 (235)
Q Consensus 81 ~a~~~w~~~~~~l~~H~~WHlAL~~le--~G~~~deAl~~yd~~i~~ 125 (235)
+..+..|.. +. -+++.++. .+ ++.+|++.|++.+..
T Consensus 161 ~l~~~dp~~------~~--~l~layL~~~~~-~~~~AL~~~ekll~~ 198 (822)
T PRK14574 161 ELAERDPTV------QN--YMTLSYLNRATD-RNYDALQASSEAVRL 198 (822)
T ss_pred HhcccCcch------HH--HHHHHHHHHhcc-hHHHHHHHHHHHHHh
Confidence 999887661 22 25666655 33 466699999999987
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=98.27 E-value=1.6e-06 Score=63.26 Aligned_cols=81 Identities=19% Similarity=0.214 Sum_probs=71.5
Q ss_pred CCChhhHHHHHHhhcCCCCC--ChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 026637 1 MGRPDLCFDIIHQVLPYNQQ--EDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQF 78 (235)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~--~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~ 78 (235)
.|+.+.|+...++++...|. ++..+..+|.++-..|+|++|....++ +..+|.++....-+|.++...|+++||+..
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 37899999999999999884 455555689999999999999999999 999999999999999999999999999999
Q ss_pred HHHc
Q 026637 79 MEEC 82 (235)
Q Consensus 79 l~~a 82 (235)
++++
T Consensus 81 l~~~ 84 (84)
T PF12895_consen 81 LEKA 84 (84)
T ss_dssp HHHH
T ss_pred HhcC
Confidence 8864
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=98.27 E-value=0.0001 Score=69.03 Aligned_cols=187 Identities=9% Similarity=0.011 Sum_probs=122.0
Q ss_pred CChhhHHHHHHhhcCCCCCChhHHHHHHH-HHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHH-HHHHHHcCCHHHHHHHH
Q 026637 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAF-SLLELGQMSDAEEAAKKGLKINKHDCWSQHAL-CHVLQHDCCFKEAVQFM 79 (235)
Q Consensus 2 G~~~~al~~~~ral~~~p~~~~~~g~~Af-~L~e~g~~~~Ae~~arrAL~L~P~dawA~hal-ahvl~~~Gr~~egi~~l 79 (235)
||+++++..+.+.-. .++.|.++..++- .-.+.|++++|.+..++|.+.+|++..+...+ +.++..+|++++++..+
T Consensus 98 Gd~~~A~k~l~~~~~-~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l 176 (398)
T PRK10747 98 GDYQQVEKLMTRNAD-HAEQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGV 176 (398)
T ss_pred CCHHHHHHHHHHHHh-cccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 888888877776433 3445666666644 54899999999999999999999998776544 89999999999999999
Q ss_pred HHchhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchhhhcCCCCCchHhHh----HHHHHHHHHHhcCcc-
Q 026637 80 EECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVYL----NALGLLLRVYVRGEL- 154 (235)
Q Consensus 80 ~~a~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~~~~~~~~~~~~~~~----da~sLL~Rl~l~G~~- 154 (235)
+++.+..|+.+ ...-.++..|+..| ++++|++++.+..... . ....+.- .+...|.+......+
T Consensus 177 ~~~~~~~P~~~-----~al~ll~~~~~~~g-dw~~a~~~l~~l~k~~---~--~~~~~~~~l~~~a~~~l~~~~~~~~~~ 245 (398)
T PRK10747 177 DKLLEVAPRHP-----EVLRLAEQAYIRTG-AWSSLLDILPSMAKAH---V--GDEEHRAMLEQQAWIGLMDQAMADQGS 245 (398)
T ss_pred HHHHhcCCCCH-----HHHHHHHHHHHHHH-hHHHHHHHHHHHHHcC---C--CCHHHHHHHHHHHHHHHHHHHHHhcCH
Confidence 99999998854 23334788888988 9999999997766542 1 1122221 221112111111111
Q ss_pred cccccchHHHHHHHHhhhcchhcchhhHHHHHHHhcCCCchHHHHHHHHHHH
Q 026637 155 DVFGNRLKVLADCVADQANWYLECHLDLLILWALANTGEVSKAEDLLKGLKS 206 (235)
Q Consensus 155 ~~~g~rw~~la~~~~~~~~~~~~~F~d~H~~~al~~ag~~~~~~~ll~~~~~ 206 (235)
......|+.++..... ++ -.-+-++-++...|+.+.+.++++..-.
T Consensus 246 ~~l~~~w~~lp~~~~~---~~---~~~~~~A~~l~~~g~~~~A~~~L~~~l~ 291 (398)
T PRK10747 246 EGLKRWWKNQSRKTRH---QV---ALQVAMAEHLIECDDHDTAQQIILDGLK 291 (398)
T ss_pred HHHHHHHHhCCHHHhC---CH---HHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 0123344444433221 11 1223446677888998888888755443
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=98.24 E-value=9.8e-05 Score=75.52 Aligned_cols=117 Identities=5% Similarity=-0.054 Sum_probs=95.7
Q ss_pred CChhhHHHHHHhhcCCCCCCh-hHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 026637 2 GRPDLCFDIIHQVLPYNQQED-FIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME 80 (235)
Q Consensus 2 G~~~~al~~~~ral~~~p~~~-~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~ 80 (235)
|+.++|++.+++++..+|.++ .++ -+...+...|++++|+..+++++.-+|....+.-++|-++..+|++++|++.++
T Consensus 48 Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Aiely~ 126 (822)
T PRK14574 48 GDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQALALWQ 126 (822)
T ss_pred CCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 888999999999999999985 444 777777788999999999999995556666666666889999999999999999
Q ss_pred HchhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026637 81 ECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 125 (235)
Q Consensus 81 ~a~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~ 125 (235)
+.....|..+.. +-.++..+.+.| ++++|++.+.+.+..
T Consensus 127 kaL~~dP~n~~~-----l~gLa~~y~~~~-q~~eAl~~l~~l~~~ 165 (822)
T PRK14574 127 SSLKKDPTNPDL-----ISGMIMTQADAG-RGGVVLKQATELAER 165 (822)
T ss_pred HHHhhCCCCHHH-----HHHHHHHHhhcC-CHHHHHHHHHHhccc
Confidence 999999885422 225788888987 899999999877665
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.24 E-value=4e-06 Score=58.97 Aligned_cols=60 Identities=15% Similarity=0.072 Sum_probs=51.2
Q ss_pred HHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhhccC
Q 026637 30 FSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSC 89 (235)
Q Consensus 30 f~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~~a~~~w~~~ 89 (235)
-.+...++|++|.+..++++.++|+++..+..+|-++..+|++++|+..++++....|+.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~ 62 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDD 62 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCc
Confidence 356778888889999999999999998888889999999999999999888888887764
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.23 E-value=1.7e-05 Score=72.68 Aligned_cols=117 Identities=12% Similarity=0.086 Sum_probs=99.3
Q ss_pred ChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCH--HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 026637 3 RPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQM--SDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME 80 (235)
Q Consensus 3 ~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~--~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~ 80 (235)
+..++++.+.+++..+|.+..++...+.++...|+. +++.....++++++|+|.+|+...+.++...|++++++.+.+
T Consensus 87 ~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~ 166 (320)
T PLN02789 87 DLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCH 166 (320)
T ss_pred hHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 468899999999999999999999999999999874 778899999999999999999999999999999999999999
Q ss_pred HchhhhccCCcchhHHHHHHHHHHHHhC---CCCH----HHHHHHHHhhchh
Q 026637 81 ECSSTWSSCSSFMYTHNWWHVALCYLEG---HSPM----RKVLEIYDNHIWK 125 (235)
Q Consensus 81 ~a~~~w~~~~~~l~~H~~WHlAL~~le~---G~~~----deAl~~yd~~i~~ 125 (235)
+.++..++.+ +.|.|........ | .+ ++.+..+++.|..
T Consensus 167 ~~I~~d~~N~-----sAW~~R~~vl~~~~~l~-~~~~~~e~el~y~~~aI~~ 212 (320)
T PLN02789 167 QLLEEDVRNN-----SAWNQRYFVITRSPLLG-GLEAMRDSELKYTIDAILA 212 (320)
T ss_pred HHHHHCCCch-----hHHHHHHHHHHhccccc-cccccHHHHHHHHHHHHHh
Confidence 9999988843 4566666555433 2 23 5678877788876
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.22 E-value=1.2e-05 Score=72.56 Aligned_cols=144 Identities=10% Similarity=0.009 Sum_probs=107.4
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhhccCCcchhHHHHHHHHH
Q 026637 24 IFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVAL 103 (235)
Q Consensus 24 ~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~~a~~~w~~~~~~l~~H~~WHlAL 103 (235)
-+-+-|--+++.++|.+|...+.+||+|+|+|+-=+-+.|-||...|.++.||.-.+.++...|+. ..-|-=+++
T Consensus 83 ~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~y-----skay~RLG~ 157 (304)
T KOG0553|consen 83 SLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHY-----SKAYGRLGL 157 (304)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHH-----HHHHHHHHH
Confidence 344556678899999999999999999999999999999999999999999999999999998774 344556999
Q ss_pred HHHhCCCCHHHHHHHHHhhchhhhcCCCCCchHhHhHHHHHHHHHHhcCcccccccchHHHHHHHHhhhcchhcchh
Q 026637 104 CYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNALGLLLRVYVRGELDVFGNRLKVLADCVADQANWYLECHL 180 (235)
Q Consensus 104 ~~le~G~~~deAl~~yd~~i~~~~~~~~~~~~~~~~da~sLL~Rl~l~G~~~~~g~rw~~la~~~~~~~~~~~~~F~ 180 (235)
+|+.+| +|++|++.|.+.+.-+ .+.. ....=+..+....|-.- .+..+.+=.+++..... +++....|+
T Consensus 158 A~~~~g-k~~~A~~aykKaLeld--P~Ne-~~K~nL~~Ae~~l~e~~---~~~~~~~~~d~~~~ig~-~Pd~~s~~~ 226 (304)
T KOG0553|consen 158 AYLALG-KYEEAIEAYKKALELD--PDNE-SYKSNLKIAEQKLNEPK---SSAQASGSFDMAGLIGA-FPDSRSMFN 226 (304)
T ss_pred HHHccC-cHHHHHHHHHhhhccC--CCcH-HHHHHHHHHHHHhcCCC---cccccccchhhhhhccC-Cccchhhhc
Confidence 999998 9999999999998773 3332 23233555555544322 23334555555555543 245454554
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=98.21 E-value=1.7e-06 Score=60.41 Aligned_cols=53 Identities=17% Similarity=0.321 Sum_probs=51.4
Q ss_pred CCChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhC-CHHHHHHHHHHHHhhCC
Q 026637 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELG-QMSDAEEAAKKGLKINK 53 (235)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g-~~~~Ae~~arrAL~L~P 53 (235)
.|++++|+...++++..+|+++.++..+|.++.+.| ++++|++.+++|++++|
T Consensus 16 ~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 16 QGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp TTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 488999999999999999999999999999999999 79999999999999999
|
... |
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=98.20 E-value=1.2e-05 Score=66.28 Aligned_cols=76 Identities=12% Similarity=0.131 Sum_probs=67.3
Q ss_pred CCChhhHHHHHHhhcCCCCC---ChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 026637 1 MGRPDLCFDIIHQVLPYNQQ---EDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAV 76 (235)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~---~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi 76 (235)
.|+.+++....++++...|+ .+.++..+|.++...|++++|++..++++.++|+++.++-.+|.++...|+...+.
T Consensus 48 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~ 126 (172)
T PRK02603 48 DGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIYHKRGEKAEEA 126 (172)
T ss_pred cCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHhHh
Confidence 48999999999999976554 35789999999999999999999999999999999999999999999988854433
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.19 E-value=7.3e-06 Score=57.64 Aligned_cols=62 Identities=15% Similarity=0.233 Sum_probs=58.2
Q ss_pred CChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 026637 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALC 63 (235)
Q Consensus 2 G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~hala 63 (235)
++++.++..+++++..+|+++.++..+|.++..+|++.+|.+..+++++++|+++.+.-..+
T Consensus 9 ~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a 70 (73)
T PF13371_consen 9 EDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRA 70 (73)
T ss_pred CCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999988765543
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.18 E-value=4.2e-06 Score=54.29 Aligned_cols=43 Identities=26% Similarity=0.264 Sum_probs=39.7
Q ss_pred hhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 026637 22 DFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCH 64 (235)
Q Consensus 22 ~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halah 64 (235)
|.++.++|.++.+.|++++|++.++++|+++|+|+.++..++.
T Consensus 1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 1 PAAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 3567889999999999999999999999999999999998875
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.18 E-value=2.2e-05 Score=78.14 Aligned_cols=119 Identities=14% Similarity=0.147 Sum_probs=107.6
Q ss_pred CChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHH--HH
Q 026637 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQ--FM 79 (235)
Q Consensus 2 G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~--~l 79 (235)
|..++++.++..+--.+|..++.+.+.|..++..|...+|.+.+.-|+.+||+++-+.+++|-++...|+..=+.. ++
T Consensus 664 ~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L 743 (799)
T KOG4162|consen 664 GNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLL 743 (799)
T ss_pred CCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHH
Confidence 5667888899999899999999999999999999999999999999999999999999999999999999888888 99
Q ss_pred HHchhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchhh
Q 026637 80 EECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE 126 (235)
Q Consensus 80 ~~a~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~~ 126 (235)
..+.+..|.++ -.|--++-.+...| +.++|.+.|+.++.-+
T Consensus 744 ~dalr~dp~n~-----eaW~~LG~v~k~~G-d~~~Aaecf~aa~qLe 784 (799)
T KOG4162|consen 744 SDALRLDPLNH-----EAWYYLGEVFKKLG-DSKQAAECFQAALQLE 784 (799)
T ss_pred HHHHhhCCCCH-----HHHHHHHHHHHHcc-chHHHHHHHHHHHhhc
Confidence 99999988853 24445888888888 9999999999999874
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=98.16 E-value=2.4e-05 Score=73.17 Aligned_cols=115 Identities=13% Similarity=0.098 Sum_probs=94.4
Q ss_pred CCChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 026637 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME 80 (235)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~ 80 (235)
.|+.+++...+++++.. |.++...-.++. ...++.+++.+.+++.++.+|+|+..+-++|.++..+|++++|.+.++
T Consensus 276 ~g~~~~A~~~L~~~l~~-~~~~~l~~l~~~--l~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le 352 (398)
T PRK10747 276 CDDHDTAQQIILDGLKR-QYDERLVLLIPR--LKTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFR 352 (398)
T ss_pred CCCHHHHHHHHHHHHhc-CCCHHHHHHHhh--ccCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 48889999999999994 445543333333 345899999999999999999999999999999999999999999999
Q ss_pred HchhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026637 81 ECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 125 (235)
Q Consensus 81 ~a~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~ 125 (235)
+....-|+.. .+.. +|..+-..| +.++|.++|.+.+.-
T Consensus 353 ~al~~~P~~~----~~~~--La~~~~~~g-~~~~A~~~~~~~l~~ 390 (398)
T PRK10747 353 AALKQRPDAY----DYAW--LADALDRLH-KPEEAAAMRRDGLML 390 (398)
T ss_pred HHHhcCCCHH----HHHH--HHHHHHHcC-CHHHHHHHHHHHHhh
Confidence 9998877742 3444 888888888 899999999887654
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=98.15 E-value=4.4e-06 Score=57.97 Aligned_cols=63 Identities=25% Similarity=0.250 Sum_probs=57.9
Q ss_pred CCChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 026637 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALC 63 (235)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~hala 63 (235)
.|++++|+..+++++..+|+++.+...+|.++.+.|++++|++..++.+..+|+++..+..++
T Consensus 4 ~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a 66 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLA 66 (68)
T ss_dssp TTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHh
Confidence 488999999999999999999999999999999999999999999999999999987766555
|
... |
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.14 E-value=4.6e-05 Score=68.83 Aligned_cols=116 Identities=13% Similarity=0.060 Sum_probs=101.3
Q ss_pred hhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC---HHHHHHHHH
Q 026637 4 PDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCC---FKEAVQFME 80 (235)
Q Consensus 4 ~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr---~~egi~~l~ 80 (235)
.+......+..+..+|+|+.-+-++|-+++.+|+++.|..++++|+.|.|+++...-.+|.+++.+.. ..++...++
T Consensus 138 ~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~ 217 (287)
T COG4235 138 MEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLR 217 (287)
T ss_pred HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence 34556667777888999999999999999999999999999999999999999999999999998875 468999999
Q ss_pred HchhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026637 81 ECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 125 (235)
Q Consensus 81 ~a~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~ 125 (235)
++....|... +.- +-+|..+++.| +|.+|+..+...+..
T Consensus 218 ~al~~D~~~i---ral--~lLA~~afe~g-~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 218 QALALDPANI---RAL--SLLAFAAFEQG-DYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHhcCCccH---HHH--HHHHHHHHHcc-cHHHHHHHHHHHHhc
Confidence 9999988743 333 34999999998 999999999888765
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.13 E-value=0.00027 Score=67.52 Aligned_cols=177 Identities=12% Similarity=0.060 Sum_probs=136.6
Q ss_pred CCChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 026637 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME 80 (235)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~ 80 (235)
|.+.+.|..+..||+..+|-|--+..-+|-+++-.+-.--|.-.+++|+++.|+|+-.+.+||.+++..++.+||+.-+.
T Consensus 377 mKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCyk 456 (559)
T KOG1155|consen 377 MKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYK 456 (559)
T ss_pred hcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHH
Confidence 45678899999999999999998888899999999999999999999999999999999999999999999999999999
Q ss_pred HchhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchhhhcCCCCCchHhHhHHHHHHHHHHhcCcccccccc
Q 026637 81 ECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNALGLLLRVYVRGELDVFGNR 160 (235)
Q Consensus 81 ~a~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~~~~~~~~~~~~~~~da~sLL~Rl~l~G~~~~~g~r 160 (235)
++...... + +-..|-+|-.|-+.+ ++.+|...|.+.|..... .+ .-....+-|...|-+....-. .
T Consensus 457 rai~~~dt-e----~~~l~~LakLye~l~-d~~eAa~~yek~v~~~~~-eg-~~~~~t~ka~~fLA~~f~k~~------~ 522 (559)
T KOG1155|consen 457 RAILLGDT-E----GSALVRLAKLYEELK-DLNEAAQYYEKYVEVSEL-EG-EIDDETIKARLFLAEYFKKMK------D 522 (559)
T ss_pred HHHhcccc-c----hHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHh-hc-ccchHHHHHHHHHHHHHHhhc------c
Confidence 99877655 3 346778999998998 899999999998876411 11 112224556666555444222 2
Q ss_pred hHHHHHHHHhhhcchhcchhhHHHHHHHhcCCCchHHHHHHHHHHHH
Q 026637 161 LKVLADCVADQANWYLECHLDLLILWALANTGEVSKAEDLLKGLKSR 207 (235)
Q Consensus 161 w~~la~~~~~~~~~~~~~F~d~H~~~al~~ag~~~~~~~ll~~~~~~ 207 (235)
|+.-..+. ..++.+.-..++++.|+..+++.
T Consensus 523 ~~~As~Ya----------------~~~~~~~~e~eeak~LlReir~~ 553 (559)
T KOG1155|consen 523 FDEASYYA----------------TLVLKGETECEEAKALLREIRKI 553 (559)
T ss_pred hHHHHHHH----------------HHHhcCCchHHHHHHHHHHHHHh
Confidence 33322222 22555555678888998888765
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.05 E-value=1.8e-05 Score=76.61 Aligned_cols=114 Identities=8% Similarity=0.053 Sum_probs=99.2
Q ss_pred HHHHHHhhcCCCC--CChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchh
Q 026637 7 CFDIIHQVLPYNQ--QEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSS 84 (235)
Q Consensus 7 al~~~~ral~~~p--~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~~a~~ 84 (235)
....+..+....| .||.++..+|..+--.|+|++|...++.||..+|+|.--+..||-++--..|.+|||..+.++..
T Consensus 413 i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq 492 (579)
T KOG1125|consen 413 IQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQ 492 (579)
T ss_pred HHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHh
Confidence 3344444555567 78899999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchhh
Q 026637 85 TWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE 126 (235)
Q Consensus 85 ~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~~ 126 (235)
+-|. |.+..+ ++|..++-+| .|.||++.|=++|.-.
T Consensus 493 LqP~---yVR~Ry--NlgIS~mNlG-~ykEA~~hlL~AL~mq 528 (579)
T KOG1125|consen 493 LQPG---YVRVRY--NLGISCMNLG-AYKEAVKHLLEALSMQ 528 (579)
T ss_pred cCCC---eeeeeh--hhhhhhhhhh-hHHHHHHHHHHHHHhh
Confidence 9854 555555 4999999998 9999999998888764
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.04 E-value=5.2e-05 Score=69.86 Aligned_cols=187 Identities=16% Similarity=0.094 Sum_probs=139.5
Q ss_pred ChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc
Q 026637 3 RPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEEC 82 (235)
Q Consensus 3 ~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~~a 82 (235)
++..++..+...+...|.+.-.+-=.|-++++++++++|.+.+++++.++|++..+...++.-+++.|++|=++.++++-
T Consensus 271 QP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRi 350 (478)
T KOG1129|consen 271 QPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRI 350 (478)
T ss_pred cHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHH
Confidence 56788899999999999999877778899999999999999999999999999999999999999999999999999988
Q ss_pred hhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchhhhcCCCCCchHhHhHHHHHHHHHHhcCcccccccc--
Q 026637 83 SSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNALGLLLRVYVRGELDVFGNR-- 160 (235)
Q Consensus 83 ~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~~~~~~~~~~~~~~~da~sLL~Rl~l~G~~~~~g~r-- 160 (235)
...=...| ..+-+++||.+-.+ ++|=++.-|.+++..- +. .. -++-.-|-|-.. .|+.||-
T Consensus 351 LqmG~~sp-----eLf~NigLCC~yaq-Q~D~~L~sf~RAlsta---t~---~~---~aaDvWYNlg~v--aV~iGD~nl 413 (478)
T KOG1129|consen 351 LQMGAQSP-----ELFCNIGLCCLYAQ-QIDLVLPSFQRALSTA---TQ---PG---QAADVWYNLGFV--AVTIGDFNL 413 (478)
T ss_pred HHhcCCCh-----HHHhhHHHHHHhhc-chhhhHHHHHHHHhhc---cC---cc---hhhhhhhcccee--EEeccchHH
Confidence 77655533 23446999999987 9999999999988873 21 11 122223333332 2333541
Q ss_pred hHHHHHHHHhhhcchhcchhhHHHHHHHhcCCCchHHHHHHHHHHHHh
Q 026637 161 LKVLADCVADQANWYLECHLDLLILWALANTGEVSKAEDLLKGLKSRH 208 (235)
Q Consensus 161 w~~la~~~~~~~~~~~~~F~d~H~~~al~~ag~~~~~~~ll~~~~~~~ 208 (235)
=..-......+-.+|....|.+-. --.+.|+.+.++.|+.+.++..
T Consensus 414 A~rcfrlaL~~d~~h~ealnNLav--L~~r~G~i~~Arsll~~A~s~~ 459 (478)
T KOG1129|consen 414 AKRCFRLALTSDAQHGEALNNLAV--LAARSGDILGARSLLNAAKSVM 459 (478)
T ss_pred HHHHHHHHhccCcchHHHHHhHHH--HHhhcCchHHHHHHHHHhhhhC
Confidence 111111222234567777777642 2358899999999999888754
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.0003 Score=71.45 Aligned_cols=124 Identities=12% Similarity=0.019 Sum_probs=79.8
Q ss_pred CCChhhHHHHHHhhcCCCCC------ChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCC--------CHHHHHHHHHHH
Q 026637 1 MGRPDLCFDIIHQVLPYNQQ------EDFIFGILAFSLLELGQMSDAEEAAKKGLKINKH--------DCWSQHALCHVL 66 (235)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~------~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~--------dawA~halahvl 66 (235)
.|+.++++...++++..... ..+.+..+|.++.+.|++++|++.+++++++... .......++.++
T Consensus 504 ~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~ 583 (903)
T PRK04841 504 KGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLL 583 (903)
T ss_pred cCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHH
Confidence 36777777777777753221 1245566677777888888888888887776322 234455677778
Q ss_pred HHcCCHHHHHHHHHHchhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026637 67 QHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 125 (235)
Q Consensus 67 ~~~Gr~~egi~~l~~a~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~ 125 (235)
..+|++++|.+.++++.+.....+.......+.-+|..++..| ++++|.+.+++....
T Consensus 584 ~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G-~~~~A~~~l~~a~~~ 641 (903)
T PRK04841 584 WEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARG-DLDNARRYLNRLENL 641 (903)
T ss_pred HHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHH
Confidence 8888888888888877655432211111223333677777777 888888888777554
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.03 E-value=4.2e-05 Score=74.10 Aligned_cols=119 Identities=13% Similarity=0.206 Sum_probs=93.0
Q ss_pred CChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHh----hCCCCH-H--HHHHHHHHHHHcCCHHH
Q 026637 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLK----INKHDC-W--SQHALCHVLQHDCCFKE 74 (235)
Q Consensus 2 G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~----L~P~da-w--A~halahvl~~~Gr~~e 74 (235)
+....+-..+.+|+...|.||+++.-+|.+--+.+.|++|...++.+|+ .+|..+ | .+.++||++-.+++++|
T Consensus 394 ~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~e 473 (611)
T KOG1173|consen 394 NNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEE 473 (611)
T ss_pred ccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHH
Confidence 4556667777888888888888888888777777888888888888882 333332 3 26788999999999999
Q ss_pred HHHHHHHchhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchhh
Q 026637 75 AVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE 126 (235)
Q Consensus 75 gi~~l~~a~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~~ 126 (235)
||.+++++....|.+. ..|-. +|+.|.-+| .+|.|++.|.++++..
T Consensus 474 AI~~~q~aL~l~~k~~---~~~as--ig~iy~llg-nld~Aid~fhKaL~l~ 519 (611)
T KOG1173|consen 474 AIDYYQKALLLSPKDA---STHAS--IGYIYHLLG-NLDKAIDHFHKALALK 519 (611)
T ss_pred HHHHHHHHHHcCCCch---hHHHH--HHHHHHHhc-ChHHHHHHHHHHHhcC
Confidence 9999999988887754 46765 888888888 8999999999998873
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=98.01 E-value=7.6e-05 Score=59.23 Aligned_cols=84 Identities=19% Similarity=0.162 Sum_probs=73.8
Q ss_pred CCChhhHHHHHHhhcCCCCCC---hhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCC---CHHHHHHHHHHHHHcCCHHH
Q 026637 1 MGRPDLCFDIIHQVLPYNQQE---DFIFGILAFSLLELGQMSDAEEAAKKGLKINKH---DCWSQHALCHVLQHDCCFKE 74 (235)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~---~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~---dawA~halahvl~~~Gr~~e 74 (235)
+|+.+++....++++..-.+. ..++-.+|..+...|++++|+...++++.-.|+ +......++.++...||++|
T Consensus 14 ~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~gr~~e 93 (120)
T PF12688_consen 14 LGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNLGRPKE 93 (120)
T ss_pred cCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHCCCHHH
Confidence 599999999999999964433 457778999999999999999999999999999 77788889999999999999
Q ss_pred HHHHHHHchh
Q 026637 75 AVQFMEECSS 84 (235)
Q Consensus 75 gi~~l~~a~~ 84 (235)
|++++..+..
T Consensus 94 Al~~~l~~la 103 (120)
T PF12688_consen 94 ALEWLLEALA 103 (120)
T ss_pred HHHHHHHHHH
Confidence 9999776553
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.01 E-value=3.7e-05 Score=73.63 Aligned_cols=130 Identities=12% Similarity=0.146 Sum_probs=92.7
Q ss_pred ChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCC------CHH-HHHHHHHHHHHcCCHHHH
Q 026637 3 RPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKH------DCW-SQHALCHVLQHDCCFKEA 75 (235)
Q Consensus 3 ~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~------daw-A~halahvl~~~Gr~~eg 75 (235)
+.++++..++.+....|.-+.+++.+|-+|..+++++.|++.+.+|++|.|+ ++- -+|---.|+..++++.+|
T Consensus 443 k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a 522 (606)
T KOG0547|consen 443 KIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWKEDINQA 522 (606)
T ss_pred HHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchhhhHHHH
Confidence 3455555666666667777777778888888888888888888888888888 543 233334566678888888
Q ss_pred HHHHHHchhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchhhhcCCCCCchHhHhHHHHH
Q 026637 76 VQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNALGL 144 (235)
Q Consensus 76 i~~l~~a~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~~~~~~~~~~~~~~~da~sL 144 (235)
+..++++....|.|. + -.--+|-+.+.+| +.++|+++|++.+.-- +| -.+++.+.||
T Consensus 523 ~~Ll~KA~e~Dpkce-~----A~~tlaq~~lQ~~-~i~eAielFEksa~lA--rt----~~E~~~a~s~ 579 (606)
T KOG0547|consen 523 ENLLRKAIELDPKCE-Q----AYETLAQFELQRG-KIDEAIELFEKSAQLA--RT----ESEMVHAYSL 579 (606)
T ss_pred HHHHHHHHccCchHH-H----HHHHHHHHHHHHh-hHHHHHHHHHHHHHHH--Hh----HHHHHHHHHH
Confidence 888888888888874 2 2334888888887 8999999998877653 33 2335555554
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=98.00 E-value=9.6e-06 Score=57.94 Aligned_cols=64 Identities=19% Similarity=0.215 Sum_probs=44.6
Q ss_pred hhHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhh
Q 026637 22 DFIFGILAFSLLELGQMSDAEEAAKKGLKIN-------KHDCWSQHALCHVLQHDCCFKEAVQFMEECSST 85 (235)
Q Consensus 22 ~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~-------P~dawA~halahvl~~~Gr~~egi~~l~~a~~~ 85 (235)
...+..+|.++.+.|+|++|+..+++|+.+. |.-++++..+|.++..+|++++|+.+++++.+.
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 4566777777777888888888777777652 223567777777777777777777777776553
|
... |
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=98.00 E-value=3.8e-05 Score=68.64 Aligned_cols=88 Identities=10% Similarity=-0.017 Sum_probs=80.5
Q ss_pred CChhhHHHHHHhhcCCCCCCh---hHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHH
Q 026637 2 GRPDLCFDIIHQVLPYNQQED---FIFGILAFSLLELGQMSDAEEAAKKGLKINKHD---CWSQHALCHVLQHDCCFKEA 75 (235)
Q Consensus 2 G~~~~al~~~~ral~~~p~~~---~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~d---awA~halahvl~~~Gr~~eg 75 (235)
|+++++...+++.+..+|+++ .++..+|..+...|+|++|...+++.+...|++ +.++..+|.++..+|+.+++
T Consensus 157 ~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~~~A 236 (263)
T PRK10803 157 SRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDTAKA 236 (263)
T ss_pred CCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCHHHH
Confidence 789999999999999999885 599999999999999999999999999998886 56666679999999999999
Q ss_pred HHHHHHchhhhccC
Q 026637 76 VQFMEECSSTWSSC 89 (235)
Q Consensus 76 i~~l~~a~~~w~~~ 89 (235)
+..+++....+|+.
T Consensus 237 ~~~~~~vi~~yP~s 250 (263)
T PRK10803 237 KAVYQQVIKKYPGT 250 (263)
T ss_pred HHHHHHHHHHCcCC
Confidence 99999999999884
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=97.99 E-value=5.9e-05 Score=63.02 Aligned_cols=97 Identities=12% Similarity=-0.001 Sum_probs=85.0
Q ss_pred hHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhhccCCcchhHHHHHHHH
Q 026637 23 FIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVA 102 (235)
Q Consensus 23 ~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~~a~~~w~~~~~~l~~H~~WHlA 102 (235)
....-+|+-+-+.|++++|+..++--..++|.++.=+..||-|+++++++++|+..+.-+.-..+++|.. ..|.|
T Consensus 38 e~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p-----~f~ag 112 (165)
T PRK15331 38 DGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRP-----VFFTG 112 (165)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCc-----cchHH
Confidence 3455567778899999999999999999999999999999999999999999999999997776666533 23799
Q ss_pred HHHHhCCCCHHHHHHHHHhhchh
Q 026637 103 LCYLEGHSPMRKVLEIYDNHIWK 125 (235)
Q Consensus 103 L~~le~G~~~deAl~~yd~~i~~ 125 (235)
.|++..| +.++|+..|...|..
T Consensus 113 qC~l~l~-~~~~A~~~f~~a~~~ 134 (165)
T PRK15331 113 QCQLLMR-KAAKARQCFELVNER 134 (165)
T ss_pred HHHHHhC-CHHHHHHHHHHHHhC
Confidence 9999998 999999999988875
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.00018 Score=67.82 Aligned_cols=110 Identities=17% Similarity=0.257 Sum_probs=96.6
Q ss_pred CChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 026637 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEE 81 (235)
Q Consensus 2 G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~~ 81 (235)
++.+.++..+++....+|+ +...++-++..+++-.+|.+...++|..+|+|+..++-.+..+..+|+.+.|+...++
T Consensus 183 ~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~ 259 (395)
T PF09295_consen 183 QRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELALEIAKK 259 (395)
T ss_pred ccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 5778889999998877765 4556777888889999999999999999999999999999999999999999999999
Q ss_pred chhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 026637 82 CSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYD 120 (235)
Q Consensus 82 a~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd 120 (235)
+....|.. | -.|-.||.+|+..| ++++|+....
T Consensus 260 av~lsP~~--f---~~W~~La~~Yi~~~-d~e~ALlaLN 292 (395)
T PF09295_consen 260 AVELSPSE--F---ETWYQLAECYIQLG-DFENALLALN 292 (395)
T ss_pred HHHhCchh--H---HHHHHHHHHHHhcC-CHHHHHHHHh
Confidence 99999884 2 35556999999998 9999997764
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.94 E-value=1.1e-05 Score=49.98 Aligned_cols=32 Identities=19% Similarity=0.343 Sum_probs=30.4
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 026637 45 AKKGLKINKHDCWSQHALCHVLQHDCCFKEAV 76 (235)
Q Consensus 45 arrAL~L~P~dawA~halahvl~~~Gr~~egi 76 (235)
++|||+++|+|+.++..+|.++...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 68999999999999999999999999999986
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.94 E-value=3.7e-05 Score=72.50 Aligned_cols=118 Identities=17% Similarity=0.192 Sum_probs=101.2
Q ss_pred CChhhHHHHHHhhcCCCCCChhHHHHHH-HHHHHhCCHHH-HHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 026637 2 GRPDLCFDIIHQVLPYNQQEDFIFGILA-FSLLELGQMSD-AEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFM 79 (235)
Q Consensus 2 G~~~~al~~~~ral~~~p~~~~~~g~~A-f~L~e~g~~~~-Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l 79 (235)
|+..+++..+.-++...|.+...+..+| .++.+.-...| |.+.++++|.++|.-.-|+..+|..+.+.|+.++||..+
T Consensus 382 ~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LL 461 (564)
T KOG1174|consen 382 KRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLL 461 (564)
T ss_pred chHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHH
Confidence 5666777777777777777777777775 57777665554 999999999999999999999999999999999999999
Q ss_pred HHchhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchhh
Q 026637 80 EECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE 126 (235)
Q Consensus 80 ~~a~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~~ 126 (235)
+++....|+|+ .|+ |+|.+.-... .+.+++..|..+++..
T Consensus 462 e~~L~~~~D~~----LH~--~Lgd~~~A~N-e~Q~am~~y~~ALr~d 501 (564)
T KOG1174|consen 462 EKHLIIFPDVN----LHN--HLGDIMRAQN-EPQKAMEYYYKALRQD 501 (564)
T ss_pred HHHHhhccccH----HHH--HHHHHHHHhh-hHHHHHHHHHHHHhcC
Confidence 99999999985 577 7999998886 8999999999998873
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.0012 Score=66.98 Aligned_cols=124 Identities=11% Similarity=-0.005 Sum_probs=95.6
Q ss_pred CCChhhHHHHHHhhcCCCCC-Ch----hHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHc
Q 026637 1 MGRPDLCFDIIHQVLPYNQQ-ED----FIFGILAFSLLELGQMSDAEEAAKKGLKINKHD------CWSQHALCHVLQHD 69 (235)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~-~~----~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~d------awA~halahvl~~~ 69 (235)
.|++++++...++++...|. +. .+...+|.++...|++++|+..+++++++.+.. .++...++.++..+
T Consensus 465 ~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~ 544 (903)
T PRK04841 465 DGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQ 544 (903)
T ss_pred CCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHC
Confidence 48899999999999875443 22 466788899999999999999999999874432 46778899999999
Q ss_pred CCHHHHHHHHHHchhhhccCC---cchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026637 70 CCFKEAVQFMEECSSTWSSCS---SFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 125 (235)
Q Consensus 70 Gr~~egi~~l~~a~~~w~~~~---~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~ 125 (235)
|++++|...++++...-.... ........+.+|..++..| ++++|.+.+++.+..
T Consensus 545 G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G-~~~~A~~~~~~al~~ 602 (903)
T PRK04841 545 GFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWA-RLDEAEQCARKGLEV 602 (903)
T ss_pred CCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhc-CHHHHHHHHHHhHHh
Confidence 999999999999866533211 0111223445788888988 999999999998775
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.00093 Score=64.97 Aligned_cols=198 Identities=17% Similarity=0.135 Sum_probs=133.3
Q ss_pred CCChhhHHHHHHhhcCC--------CCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhC--------CCCHHHHHHHHH
Q 026637 1 MGRPDLCFDIIHQVLPY--------NQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKIN--------KHDCWSQHALCH 64 (235)
Q Consensus 1 ~G~~~~al~~~~ral~~--------~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~--------P~dawA~halah 64 (235)
+|++.++....++|+.. +|...-++..+|..+..+|+|++|+..+++|+.|- |.-+-.+-.++-
T Consensus 254 ~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~ 333 (508)
T KOG1840|consen 254 LGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAA 333 (508)
T ss_pred hccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHH
Confidence 36778888888888864 45566799999999999999999999999999864 334567788999
Q ss_pred HHHHcCCHHHHHHHHHHchhhhccCC---cchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchhhhcCCCCCc--hHhHh
Q 026637 65 VLQHDCCFKEAVQFMEECSSTWSSCS---SFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVH--PEVYL 139 (235)
Q Consensus 65 vl~~~Gr~~egi~~l~~a~~~w~~~~---~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~~~~~~~~~~--~~~~~ 139 (235)
++..++++++++..+.++.....+.+ +....++.=.+|-.|+..| +|++|.++|.++|..-.+..+... ...-+
T Consensus 334 ~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~g-k~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l 412 (508)
T KOG1840|consen 334 ILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMG-KYKEAEELYKKAIQILRELLGKKDYGVGKPL 412 (508)
T ss_pred HHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhc-chhHHHHHHHHHHHHHHhcccCcChhhhHHH
Confidence 99999999999999999976654322 1123344556999999998 999999999999988643222111 11112
Q ss_pred HHHHHHHHHHhcCcccccccchHHHHHHHHh----hhcch-hcchhhHHHHHHHhcCCCchHHHHHHHHHH
Q 026637 140 NALGLLLRVYVRGELDVFGNRLKVLADCVAD----QANWY-LECHLDLLILWALANTGEVSKAEDLLKGLK 205 (235)
Q Consensus 140 da~sLL~Rl~l~G~~~~~g~rw~~la~~~~~----~~~~~-~~~F~d~H~~~al~~ag~~~~~~~ll~~~~ 205 (235)
+=.+..+ .++-.. ..|..+...... ..+++ ..-+.=.-.+-.+-+.|+.+.+.++.+.+-
T Consensus 413 ~~la~~~-~~~k~~-----~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 413 NQLAEAY-EELKKY-----EEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHHHH-HHhccc-----chHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 2233332 333222 335555443322 12233 222322333556778899999988876665
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.00028 Score=62.93 Aligned_cols=118 Identities=19% Similarity=0.155 Sum_probs=105.9
Q ss_pred CChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 026637 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEE 81 (235)
Q Consensus 2 G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~~ 81 (235)
|+..-|..++.+.-.-.|.+.-+..+.|.-|+-+|.+++|++...+-|+-||+|.-.+-.---+.--+|+.-++|.-+..
T Consensus 66 ~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~ 145 (289)
T KOG3060|consen 66 GRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNE 145 (289)
T ss_pred cchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence 56666777777766666999999999999999999999999999999999999999999888899999999999999999
Q ss_pred chhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026637 82 CSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 125 (235)
Q Consensus 82 a~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~ 125 (235)
..+..+.++ --||-+|-.|+..| +|++|.=.|+..|-.
T Consensus 146 YL~~F~~D~-----EAW~eLaeiY~~~~-~f~kA~fClEE~ll~ 183 (289)
T KOG3060|consen 146 YLDKFMNDQ-----EAWHELAEIYLSEG-DFEKAAFCLEELLLI 183 (289)
T ss_pred HHHHhcCcH-----HHHHHHHHHHHhHh-HHHHHHHHHHHHHHc
Confidence 999988763 47888999999998 999999999998866
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00017 Score=72.01 Aligned_cols=114 Identities=15% Similarity=0.245 Sum_probs=93.8
Q ss_pred hhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc
Q 026637 4 PDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKI-NKHDCWSQHALCHVLQHDCCFKEAVQFMEEC 82 (235)
Q Consensus 4 ~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L-~P~dawA~halahvl~~~Gr~~egi~~l~~a 82 (235)
..+.+..+++|+..+|.||.+...+|.-+.+.++++.|...++++|++ +.+++-++|-++-|+--++|+.+|+...+.+
T Consensus 460 h~kslqale~av~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~a 539 (799)
T KOG4162|consen 460 HKKSLQALEEAVQFDPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAA 539 (799)
T ss_pred HHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 356889999999999999999999999999999999999999999999 5566999999999999999999999999999
Q ss_pred hhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhc
Q 026637 83 SSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHI 123 (235)
Q Consensus 83 ~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i 123 (235)
..-|+. | +--.|.--|+-+. .+ +.++++......+
T Consensus 540 l~E~~~-N-~~l~~~~~~i~~~---~~-~~e~~l~t~~~~L 574 (799)
T KOG4162|consen 540 LEEFGD-N-HVLMDGKIHIELT---FN-DREEALDTCIHKL 574 (799)
T ss_pred HHHhhh-h-hhhchhhhhhhhh---cc-cHHHHHHHHHHHH
Confidence 999988 3 1112222233333 35 6788887765544
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00092 Score=58.89 Aligned_cols=144 Identities=11% Similarity=0.015 Sum_probs=108.9
Q ss_pred CChhhHHHHHHhhcCCCCCChhHH---HHHHHHHHHhCCHHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHHcC-----
Q 026637 2 GRPDLCFDIIHQVLPYNQQEDFIF---GILAFSLLELGQMSDAEEAAKKGLKINKHDC---WSQHALCHVLQHDC----- 70 (235)
Q Consensus 2 G~~~~al~~~~ral~~~p~~~~~~---g~~Af~L~e~g~~~~Ae~~arrAL~L~P~da---wA~halahvl~~~G----- 70 (235)
|+.++|....+++++.+|..+++. -++|.++-..++|++|...+++.+.+.|+++ ++..-+|-+....+
T Consensus 46 g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~~~~~~~~ 125 (243)
T PRK10866 46 GNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNMALDDSALQ 125 (243)
T ss_pred CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhhhcchhhhh
Confidence 889999999999999999988765 8899999999999999999999999999986 55566665543333
Q ss_pred -------------CHHHHHHHHHHchhhhccCCc-------------chhHHHHHHHHHHHHhCCCCHHHHHHHHHhhch
Q 026637 71 -------------CFKEAVQFMEECSSTWSSCSS-------------FMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIW 124 (235)
Q Consensus 71 -------------r~~egi~~l~~a~~~w~~~~~-------------~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~ 124 (235)
...+++.-+++.++.+|+.+- .+.. .-++.|-+|+..| .|..|+..++..|.
T Consensus 126 ~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~-~e~~ia~~Y~~~~-~y~AA~~r~~~v~~ 203 (243)
T PRK10866 126 GFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAK-YELSVAEYYTKRG-AYVAVVNRVEQMLR 203 (243)
T ss_pred hccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHcC-chHHHHHHHHHHHH
Confidence 135788899999999988441 1122 2346899999998 99999999999998
Q ss_pred hhhcCCCCCchHhHhHHHHHHHHHHh-cCc
Q 026637 125 KELEKPDAVHPEVYLNALGLLLRVYV-RGE 153 (235)
Q Consensus 125 ~~~~~~~~~~~~~~~da~sLL~Rl~l-~G~ 153 (235)
.. ++++. .-+|..++-.-.. .|.
T Consensus 204 ~Y---p~t~~---~~eal~~l~~ay~~lg~ 227 (243)
T PRK10866 204 DY---PDTQA---TRDALPLMENAYRQLQL 227 (243)
T ss_pred HC---CCCch---HHHHHHHHHHHHHHcCC
Confidence 75 22222 3466666655543 354
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.0015 Score=64.40 Aligned_cols=193 Identities=15% Similarity=0.125 Sum_probs=120.3
Q ss_pred CCChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 026637 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME 80 (235)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~ 80 (235)
||+.++|...+.+.+.-++.++.-..++|...-...+|++|++.++.||.+.|||-..+-.++......|+++--..-
T Consensus 54 lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~t-- 131 (700)
T KOG1156|consen 54 LGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLET-- 131 (700)
T ss_pred ccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHH--
Confidence 577777777777777777766666666666677777777777777777777777777777777776666666543333
Q ss_pred HchhhhccCCcchhHH-HHHHHHHHHHhCCCCHHHHHHHHHhhchhhhcCCCCCchHhHhHHHHHHHHHHhcCccccccc
Q 026637 81 ECSSTWSSCSSFMYTH-NWWHVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNALGLLLRVYVRGELDVFGN 159 (235)
Q Consensus 81 ~a~~~w~~~~~~l~~H-~~WHlAL~~le~G~~~deAl~~yd~~i~~~~~~~~~~~~~~~~da~sLL~Rl~l~G~~~~~g~ 159 (235)
+...|...|+ .| +|--.|+.+...| +|..|+.+.+.-+... . .+++..++--.-++|+|-...=....+++
T Consensus 132 -r~~LLql~~~---~ra~w~~~Avs~~L~g-~y~~A~~il~ef~~t~-~--~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ 203 (700)
T KOG1156|consen 132 -RNQLLQLRPS---QRASWIGFAVAQHLLG-EYKMALEILEEFEKTQ-N--TSPSKEDYEHSELLLYQNQILIEAGSLQK 203 (700)
T ss_pred -HHHHHHhhhh---hHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhh-c--cCCCHHHHHHHHHHHHHHHHHHHcccHHH
Confidence 4444444342 24 6667899999998 9999999998887763 1 33567778889999999886322111234
Q ss_pred chHHHHHHHHhhhcchhcchhhHHH-HHHHhcCCCchHHHHHHHHHHHH
Q 026637 160 RLKVLADCVADQANWYLECHLDLLI-LWALANTGEVSKAEDLLKGLKSR 207 (235)
Q Consensus 160 rw~~la~~~~~~~~~~~~~F~d~H~-~~al~~ag~~~~~~~ll~~~~~~ 207 (235)
+.+.+-+.-.. -..-|+-.+. +--+..-++.+.+..+...+-.+
T Consensus 204 ale~L~~~e~~----i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r 248 (700)
T KOG1156|consen 204 ALEHLLDNEKQ----IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER 248 (700)
T ss_pred HHHHHHhhhhH----HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh
Confidence 45544443322 1112222222 11222455666666555555543
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00012 Score=69.87 Aligned_cols=72 Identities=11% Similarity=0.053 Sum_probs=63.8
Q ss_pred hhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhhccCCcchhH-HHHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026637 50 KINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYT-HNWWHVALCYLEGHSPMRKVLEIYDNHIWK 125 (235)
Q Consensus 50 ~L~P~dawA~halahvl~~~Gr~~egi~~l~~a~~~w~~~~~~l~~-H~~WHlAL~~le~G~~~deAl~~yd~~i~~ 125 (235)
+-+|++++++.++|.++...|+++||+..+++++...|+.. .. ..|.++|-+|..+| ++++|++.|+++|..
T Consensus 69 ~~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~a---eA~~A~yNLAcaya~LG-r~dEAla~LrrALel 141 (453)
T PLN03098 69 EADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPD---EAQAAYYNKACCHAYRE-EGKKAADCLRTALRD 141 (453)
T ss_pred cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCch---HHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHh
Confidence 36899999999999999999999999999999999998853 12 23556999999998 999999999999985
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.0017 Score=63.17 Aligned_cols=209 Identities=17% Similarity=0.094 Sum_probs=134.6
Q ss_pred CCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhhccC
Q 026637 18 NQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKI--------NKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSC 89 (235)
Q Consensus 18 ~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L--------~P~dawA~halahvl~~~Gr~~egi~~l~~a~~~w~~~ 89 (235)
.|.-......++-.+...|+|+.|+..+++|+.+ .|.-+-..-.+|-++.-++++++|+..++++...-..+
T Consensus 195 ~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~ 274 (508)
T KOG1840|consen 195 DPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEV 274 (508)
T ss_pred CchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHh
Confidence 4555677777999999999999999999999999 77777778889999999999999999999996654421
Q ss_pred -----CcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchhhhcCCCCCchHhHhHHHHHHHHHHhcCcccccccchHHH
Q 026637 90 -----SSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNALGLLLRVYVRGELDVFGNRLKVL 164 (235)
Q Consensus 90 -----~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~~~~~~~~~~~~~~~da~sLL~Rl~l~G~~~~~g~rw~~l 164 (235)
|..-..++ .||..|...| +|++|...+++++.......+....++-.--+.+--.+++.+.-...-.-.+..
T Consensus 275 ~G~~h~~va~~l~--nLa~ly~~~G-Kf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~a 351 (508)
T KOG1840|consen 275 FGEDHPAVAATLN--NLAVLYYKQG-KFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKA 351 (508)
T ss_pred cCCCCHHHHHHHH--HHHHHHhccC-ChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 11112233 4899999988 999999999999887633222222222222222223344443321111111111
Q ss_pred HHHHH-hhhcch-hcchhhHHHHHHHhcCCCchHHHHHHHHHHHHhhcCchHHHHHHHHHH-HHHHhh
Q 026637 165 ADCVA-DQANWY-LECHLDLLILWALANTGEVSKAEDLLKGLKSRHSKMIKKKQELMQTGV-QVSSDI 229 (235)
Q Consensus 165 a~~~~-~~~~~~-~~~F~d~H~~~al~~ag~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~-~l~~~~ 229 (235)
..... .-..++ ..+-.-..+...+-..|+...++++.++.=...++..+....-+++++ .||++.
T Consensus 352 l~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~ 419 (508)
T KOG1840|consen 352 LKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAY 419 (508)
T ss_pred HHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHH
Confidence 12211 112222 444445556788889999999999988887777654444344444443 455543
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.005 Score=59.04 Aligned_cols=153 Identities=14% Similarity=0.054 Sum_probs=111.6
Q ss_pred ChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhhccCCcchhHHHHHH
Q 026637 21 EDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWH 100 (235)
Q Consensus 21 ~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~~a~~~w~~~~~~l~~H~~WH 100 (235)
..-+..=.|....+.|.+++|+...+.-++..|+|+|..-..+.++...|+.++|++.++++....|..+ ..+-.
T Consensus 305 ~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~-----~l~~~ 379 (484)
T COG4783 305 GLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSP-----LLQLN 379 (484)
T ss_pred chHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcc-----HHHHH
Confidence 3344444566777899999999999999999999999999999999999999999999999999998843 34556
Q ss_pred HHHHHHhCCCCHHHHHHHHHhhchhhhcCCCCCchHhHhHHHHHHHHHHhcCcccccccchHHHHHHHHhhhcchhcchh
Q 026637 101 VALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNALGLLLRVYVRGELDVFGNRLKVLADCVADQANWYLECHL 180 (235)
Q Consensus 101 lAL~~le~G~~~deAl~~yd~~i~~~~~~~~~~~~~~~~da~sLL~Rl~l~G~~~~~g~rw~~la~~~~~~~~~~~~~F~ 180 (235)
+|-.++..| ++.+|+.+..+.+... +++ -| -|+-|+...... .+.. =.
T Consensus 380 ~a~all~~g-~~~eai~~L~~~~~~~--p~d-------p~-------------------~w~~LAqay~~~-g~~~--~a 427 (484)
T COG4783 380 LAQALLKGG-KPQEAIRILNRYLFND--PED-------PN-------------------GWDLLAQAYAEL-GNRA--EA 427 (484)
T ss_pred HHHHHHhcC-ChHHHHHHHHHHhhcC--CCC-------ch-------------------HHHHHHHHHHHh-CchH--HH
Confidence 999999987 9999999998877663 221 12 344444443321 1111 01
Q ss_pred hHHHHHHHhcCCCchHHHHHHHHHHHHhhc
Q 026637 181 DLLILWALANTGEVSKAEDLLKGLKSRHSK 210 (235)
Q Consensus 181 d~H~~~al~~ag~~~~~~~ll~~~~~~~~~ 210 (235)
..=++-.+..+|+.+.+...+...++..+.
T Consensus 428 ~~A~AE~~~~~G~~~~A~~~l~~A~~~~~~ 457 (484)
T COG4783 428 LLARAEGYALAGRLEQAIIFLMRASQQVKL 457 (484)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHhccC
Confidence 222233455678888788777777777654
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00063 Score=55.52 Aligned_cols=101 Identities=12% Similarity=0.007 Sum_probs=85.1
Q ss_pred hHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhhccCCcchhHHHHHHHH
Q 026637 23 FIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVA 102 (235)
Q Consensus 23 ~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~~a~~~w~~~~~~l~~H~~WHlA 102 (235)
-.+-..|.++.|.|+++.|.+.+-+||.+.|..+-++.+.+.++-.+|+.+++++-+.++...-..- .--.+|-+-.-+
T Consensus 44 ~~LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~-trtacqa~vQRg 122 (175)
T KOG4555|consen 44 RELELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ-TRTACQAFVQRG 122 (175)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc-chHHHHHHHHHH
Confidence 3566778899999999999999999999999999999999999999999999999999998775332 222456555688
Q ss_pred HHHHhCCCCHHHHHHHHHhhchh
Q 026637 103 LCYLEGHSPMRKVLEIYDNHIWK 125 (235)
Q Consensus 103 L~~le~G~~~deAl~~yd~~i~~ 125 (235)
+.|--+| +-|.|..=|..+-.-
T Consensus 123 ~lyRl~g-~dd~AR~DFe~AA~L 144 (175)
T KOG4555|consen 123 LLYRLLG-NDDAARADFEAAAQL 144 (175)
T ss_pred HHHHHhC-chHHHHHhHHHHHHh
Confidence 8887887 889999988776554
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00013 Score=70.81 Aligned_cols=87 Identities=18% Similarity=0.172 Sum_probs=82.9
Q ss_pred CChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 026637 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEE 81 (235)
Q Consensus 2 G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~~ 81 (235)
|+++++.++++.||...|+|.-..+-+|-.|.-..+..+|+.+++|||+|.|+..-+..+||-.+.-.|.++||+..+-.
T Consensus 444 ~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~ 523 (579)
T KOG1125|consen 444 GEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLE 523 (579)
T ss_pred hHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhcc
Q 026637 82 CSSTWSS 88 (235)
Q Consensus 82 a~~~w~~ 88 (235)
++..-+.
T Consensus 524 AL~mq~k 530 (579)
T KOG1125|consen 524 ALSMQRK 530 (579)
T ss_pred HHHhhhc
Confidence 9766544
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00018 Score=69.78 Aligned_cols=122 Identities=13% Similarity=0.122 Sum_probs=86.9
Q ss_pred hhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHch
Q 026637 4 PDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECS 83 (235)
Q Consensus 4 ~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~~a~ 83 (235)
.++++...-+|-.+.|+...-.-.+|.-+..++.+..|++.+.+|++++|+||...|-+|-|.+..+.+.+|+.+++.+.
T Consensus 362 hdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l 441 (611)
T KOG1173|consen 362 HDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKAL 441 (611)
T ss_pred HHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHH
Confidence 33344444444333333333333455566678899999999999999999999999999999999999999999999986
Q ss_pred hhhcc-CCcchhHH-HHHHHHHHHHhCCCCHHHHHHHHHhhchhh
Q 026637 84 STWSS-CSSFMYTH-NWWHVALCYLEGHSPMRKVLEIYDNHIWKE 126 (235)
Q Consensus 84 ~~w~~-~~~~l~~H-~~WHlAL~~le~G~~~deAl~~yd~~i~~~ 126 (235)
..=+. .+....-| .+-+++..+-..+ .+++|+.-|.+++...
T Consensus 442 ~~ik~~~~e~~~w~p~~~NLGH~~Rkl~-~~~eAI~~~q~aL~l~ 485 (611)
T KOG1173|consen 442 EVIKSVLNEKIFWEPTLNNLGHAYRKLN-KYEEAIDYYQKALLLS 485 (611)
T ss_pred HHhhhccccccchhHHHHhHHHHHHHHh-hHHHHHHHHHHHHHcC
Confidence 21111 01000011 2335888888888 9999999999999874
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00022 Score=72.72 Aligned_cols=138 Identities=14% Similarity=0.145 Sum_probs=108.2
Q ss_pred ChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc
Q 026637 3 RPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEEC 82 (235)
Q Consensus 3 ~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~~a 82 (235)
..+.|+.+..+||..+|-+-|+-+=+|-+|.++|++.+|..++.+.-+--.+++.++-++|||+..+|++..||..++.+
T Consensus 627 ~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~ 706 (1018)
T KOG2002|consen 627 HQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENC 706 (1018)
T ss_pred HHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHH
Confidence 35678889999999999999999999999999999999999998888877788889999999999999999999999999
Q ss_pred hhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchhhhcCCCCCchHhHhHHHHHHHHHH
Q 026637 83 SSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNALGLLLRVY 149 (235)
Q Consensus 83 ~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~~~~~~~~~~~~~~~da~sLL~Rl~ 149 (235)
.+..-.-++ .++.-=||-++++.| .+.++.+..-.++... .++ +....|-+-.+.++-
T Consensus 707 lkkf~~~~~---~~vl~~Lara~y~~~-~~~eak~~ll~a~~~~--p~~---~~v~FN~a~v~kkla 764 (1018)
T KOG2002|consen 707 LKKFYKKNR---SEVLHYLARAWYEAG-KLQEAKEALLKARHLA--PSN---TSVKFNLALVLKKLA 764 (1018)
T ss_pred HHHhcccCC---HHHHHHHHHHHHHhh-hHHHHHHHHHHHHHhC--Ccc---chHHhHHHHHHHHHH
Confidence 776442232 233333899999998 8999998887766652 222 224567666666664
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.0016 Score=64.95 Aligned_cols=115 Identities=10% Similarity=0.018 Sum_probs=69.8
Q ss_pred CChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 026637 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLK--INKHDCWSQHALCHVLQHDCCFKEAVQFM 79 (235)
Q Consensus 2 G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~--L~P~dawA~halahvl~~~Gr~~egi~~l 79 (235)
|+.++|+..+++..+ .+...++.+.-++...|++++|.+++++-.. +.| |...+.++..++...|+.++|...+
T Consensus 273 g~~~~A~~vf~~m~~---~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~i~ 348 (697)
T PLN03081 273 GDIEDARCVFDGMPE---KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSI-DQFTFSIMIRIFSRLALLEHAKQAH 348 (697)
T ss_pred CCHHHHHHHHHhCCC---CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhccchHHHHHHH
Confidence 566667666665532 3556666666777777777777777776654 333 3456777777777777777777776
Q ss_pred HHchhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026637 80 EECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 125 (235)
Q Consensus 80 ~~a~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~ 125 (235)
+...+.-...+ . ...+ -+-..|...| ++++|.++|++...+
T Consensus 349 ~~m~~~g~~~d-~-~~~~--~Li~~y~k~G-~~~~A~~vf~~m~~~ 389 (697)
T PLN03081 349 AGLIRTGFPLD-I-VANT--ALVDLYSKWG-RMEDARNVFDRMPRK 389 (697)
T ss_pred HHHHHhCCCCC-e-eehH--HHHHHHHHCC-CHHHHHHHHHhCCCC
Confidence 66655432211 1 1222 2555555665 677777777665543
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00072 Score=68.53 Aligned_cols=113 Identities=14% Similarity=0.101 Sum_probs=93.7
Q ss_pred hHHHHHHH--HHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhhccCCcchhHHHHHH
Q 026637 23 FIFGILAF--SLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWH 100 (235)
Q Consensus 23 ~~~g~~Af--~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~~a~~~w~~~~~~l~~H~~WH 100 (235)
.+.+++|- .+--.|++++|++++.+.+..+|+++.++.+||.|++.+|+.++++-+.--+....|.+. -.|-+
T Consensus 138 ~l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~-----e~W~~ 212 (895)
T KOG2076|consen 138 ELRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDY-----ELWKR 212 (895)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCh-----HHHHH
Confidence 34555543 444569999999999999999999999999999999999999999999888888988864 47889
Q ss_pred HHHHHHhCCCCHHHHHHHHHhhchhhhcCCCCCchHhHhHHHHHHH
Q 026637 101 VALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNALGLLL 146 (235)
Q Consensus 101 lAL~~le~G~~~deAl~~yd~~i~~~~~~~~~~~~~~~~da~sLL~ 146 (235)
+|-...++| .+++|.-.|+++|... ++. .+-+..-++|+=
T Consensus 213 ladls~~~~-~i~qA~~cy~rAI~~~--p~n---~~~~~ers~L~~ 252 (895)
T KOG2076|consen 213 LADLSEQLG-NINQARYCYSRAIQAN--PSN---WELIYERSSLYQ 252 (895)
T ss_pred HHHHHHhcc-cHHHHHHHHHHHHhcC--Ccc---hHHHHHHHHHHH
Confidence 999999998 9999999999999883 332 334566666665
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.0004 Score=65.55 Aligned_cols=82 Identities=20% Similarity=0.209 Sum_probs=77.1
Q ss_pred CCChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 026637 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME 80 (235)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~ 80 (235)
+++..+|.+.+.+++...|.++..+...|--|...++++.|.+.+++|+.+.|++-..+..|+.+|...|++++|+..+.
T Consensus 213 ~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLN 292 (395)
T PF09295_consen 213 MNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALN 292 (395)
T ss_pred cCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHh
Confidence 35677899999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred Hc
Q 026637 81 EC 82 (235)
Q Consensus 81 ~a 82 (235)
.+
T Consensus 293 s~ 294 (395)
T PF09295_consen 293 SC 294 (395)
T ss_pred cC
Confidence 55
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.0012 Score=64.48 Aligned_cols=124 Identities=15% Similarity=0.158 Sum_probs=102.8
Q ss_pred CCChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 026637 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME 80 (235)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~ 80 (235)
+|+.++|+..|.+++.+.|..+.++-+.|=+|...|++.+|.+..+.|-.|++.|-..---.+-.+...|+.++|...+.
T Consensus 207 ~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~ 286 (517)
T PF12569_consen 207 LGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTAS 286 (517)
T ss_pred hCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred Hchhhhc-cCCcchhHH-HHHH--HHHHHHhCCCCHHHHHHHHHhhchh
Q 026637 81 ECSSTWS-SCSSFMYTH-NWWH--VALCYLEGHSPMRKVLEIYDNHIWK 125 (235)
Q Consensus 81 ~a~~~w~-~~~~~l~~H-~~WH--lAL~~le~G~~~deAl~~yd~~i~~ 125 (235)
...+... ...+..-.- +|.. .|.+|+..| ++..|+..|.....-
T Consensus 287 ~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~-~~~~ALk~~~~v~k~ 334 (517)
T PF12569_consen 287 LFTREDVDPLSNLNDMQCMWFETECAEAYLRQG-DYGLALKRFHAVLKH 334 (517)
T ss_pred hhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH
Confidence 8766542 112221122 3333 577888887 899999988554433
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.00017 Score=43.20 Aligned_cols=34 Identities=21% Similarity=0.289 Sum_probs=30.0
Q ss_pred hhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCC
Q 026637 22 DFIFGILAFSLLELGQMSDAEEAAKKGLKINKHD 55 (235)
Q Consensus 22 ~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~d 55 (235)
+.++..+|.++.++|++++|++.+++|++++|+|
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 3567889999999999999999999999999986
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.0011 Score=56.37 Aligned_cols=142 Identities=14% Similarity=0.145 Sum_probs=103.5
Q ss_pred CCChhhHHHHHHhhcCCCCCCh---hHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHHcC----
Q 026637 1 MGRPDLCFDIIHQVLPYNQQED---FIFGILAFSLLELGQMSDAEEAAKKGLKINKHDC---WSQHALCHVLQHDC---- 70 (235)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~---~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~da---wA~halahvl~~~G---- 70 (235)
.|+..+|....+++....|..+ .+..++|.++-..|+|+.|+..+++-+...|+++ +|..-+|.++..+.
T Consensus 18 ~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~~~~~~~ 97 (203)
T PF13525_consen 18 QGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYKQIPGIL 97 (203)
T ss_dssp CT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHhCccch
Confidence 3889999999999999888765 5788999999999999999999999999999987 57777777766654
Q ss_pred -------CHHHHHHHHHHchhhhccCCc-------------chhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchhhhcCC
Q 026637 71 -------CFKEAVQFMEECSSTWSSCSS-------------FMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKELEKP 130 (235)
Q Consensus 71 -------r~~egi~~l~~a~~~w~~~~~-------------~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~~~~~~ 130 (235)
...+|+..++..+..+|+.+- .+..| -+..|.+|+..| .|..|+..|+..|..- +
T Consensus 98 ~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~-e~~ia~~Y~~~~-~y~aA~~r~~~v~~~y--p- 172 (203)
T PF13525_consen 98 RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEH-ELYIARFYYKRG-KYKAAIIRFQYVIENY--P- 172 (203)
T ss_dssp -TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHH-HHHHHHHHHCTT--HHHHHHHHHHHHHHS--T-
T ss_pred hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHcc-cHHHHHHHHHHHHHHC--C-
Confidence 345899999999999998542 11222 356899999998 9999999999988874 2
Q ss_pred CCCchHhHhHHHHHHHHHHh
Q 026637 131 DAVHPEVYLNALGLLLRVYV 150 (235)
Q Consensus 131 ~~~~~~~~~da~sLL~Rl~l 150 (235)
+ +...-+|..++-+-..
T Consensus 173 ~---t~~~~~al~~l~~~y~ 189 (203)
T PF13525_consen 173 D---TPAAEEALARLAEAYY 189 (203)
T ss_dssp T---SHHHHHHHHHHHHHHH
T ss_pred C---CchHHHHHHHHHHHHH
Confidence 2 1223356666555443
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.0011 Score=67.80 Aligned_cols=122 Identities=9% Similarity=0.115 Sum_probs=99.8
Q ss_pred CCChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhC---CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 026637 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELG---QMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQ 77 (235)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g---~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~ 77 (235)
||+.+.++-..+||+.++|.+.-++--+|.+..... -|..|.....+|..+||++|-++.-|+.-++..|+++..+.
T Consensus 212 l~~~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~ 291 (1018)
T KOG2002|consen 212 LGMSEKALLAFERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWH 291 (1018)
T ss_pred ccchhhHHHHHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHH
Confidence 578899999999999999987766555555444444 56679999999999999999999999999999999999999
Q ss_pred HHHHchhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026637 78 FMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 125 (235)
Q Consensus 78 ~l~~a~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~ 125 (235)
+++.++..-.. ..+..+.+.-+|-+|-.+| +||+|...|-..+..
T Consensus 292 la~~ai~~t~~--~~~~aes~Y~~gRs~Ha~G-d~ekA~~yY~~s~k~ 336 (1018)
T KOG2002|consen 292 LAEHAIKNTEN--KSIKAESFYQLGRSYHAQG-DFEKAFKYYMESLKA 336 (1018)
T ss_pred HHHHHHHhhhh--hHHHHHHHHHHHHHHHhhc-cHHHHHHHHHHHHcc
Confidence 99988776533 2345665445999998998 899999999777655
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.00069 Score=69.69 Aligned_cols=118 Identities=13% Similarity=0.044 Sum_probs=105.0
Q ss_pred CCChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCH-------------------HHHHH
Q 026637 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDC-------------------WSQHA 61 (235)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~da-------------------wA~ha 61 (235)
.|+.+++.+.++.++...|+...++.+.|+.+.+.++++.+..+ +++.+-|.+. .|+.+
T Consensus 44 ~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve~~~~~i~~~~~~k~Al~~ 121 (906)
T PRK14720 44 ENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVEHICDKILLYGENKLALRT 121 (906)
T ss_pred cCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHHHHHHHHHhhhhhhHHHHH
Confidence 37889999999999999999999999999999999999999888 9999999998 99999
Q ss_pred HHHHHHHcCCHHHHHHHHHHchhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchhhh
Q 026637 62 LCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKEL 127 (235)
Q Consensus 62 lahvl~~~Gr~~egi~~l~~a~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~~~ 127 (235)
+|.+|...|+.+++.+.+++..+.+|+.+. .-| ++|.++-+. +.++|+++|.++|....
T Consensus 122 LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~---aLN--n~AY~~ae~--dL~KA~~m~~KAV~~~i 180 (906)
T PRK14720 122 LAEAYAKLNENKKLKGVWERLVKADRDNPE---IVK--KLATSYEEE--DKEKAITYLKKAIYRFI 180 (906)
T ss_pred HHHHHHHcCChHHHHHHHHHHHhcCcccHH---HHH--HHHHHHHHh--hHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999988541 234 489888775 79999999999998854
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.00024 Score=50.61 Aligned_cols=72 Identities=14% Similarity=0.151 Sum_probs=57.1
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhhccCCcc--hhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026637 53 KHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSF--MYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 125 (235)
Q Consensus 53 P~dawA~halahvl~~~Gr~~egi~~l~~a~~~w~~~~~~--l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~ 125 (235)
|+-+.++..+|.++..+|++++|+..++++.......++- .....+.++|.++...| ++++|++.|++.+..
T Consensus 2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g-~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLG-DYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhh
Confidence 4557789999999999999999999999998775433321 12345667999999998 999999999998764
|
... |
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.018 Score=60.65 Aligned_cols=118 Identities=14% Similarity=0.098 Sum_probs=57.5
Q ss_pred CChhhHHHHHHhhcC----CCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHH
Q 026637 2 GRPDLCFDIIHQVLP----YNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKIN-KHDCWSQHALCHVLQHDCCFKEAV 76 (235)
Q Consensus 2 G~~~~al~~~~ral~----~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~-P~dawA~halahvl~~~Gr~~egi 76 (235)
|+.++++...++... ..|+ ...++.+--++..+|++++|++++++..+.+ +.++..+.++...+...|++++|+
T Consensus 556 G~~deA~~lf~eM~~~~~gi~PD-~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl 634 (1060)
T PLN03218 556 GAVDRAFDVLAEMKAETHPIDPD-HITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFAL 634 (1060)
T ss_pred CCHHHHHHHHHHHHHhcCCCCCc-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHH
Confidence 444555555554432 1222 3344444445555666666666666555554 334555555666666666666666
Q ss_pred HHHHHchhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026637 77 QFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 125 (235)
Q Consensus 77 ~~l~~a~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~ 125 (235)
..+++....--. |+. .+.+ .+-..+...| ++++|+++++..+..
T Consensus 635 ~lf~eM~~~Gv~-PD~-~Tyn--sLI~a~~k~G-~~eeA~~l~~eM~k~ 678 (1060)
T PLN03218 635 SIYDDMKKKGVK-PDE-VFFS--ALVDVAGHAG-DLDKAFEILQDARKQ 678 (1060)
T ss_pred HHHHHHHHcCCC-CCH-HHHH--HHHHHHHhCC-CHHHHHHHHHHHHHc
Confidence 665555433211 111 1111 2333344444 566666666555544
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.00094 Score=60.42 Aligned_cols=89 Identities=13% Similarity=0.063 Sum_probs=80.3
Q ss_pred CCChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhC---CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 026637 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELG---QMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQ 77 (235)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g---~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~ 77 (235)
+|+...+.....+|+.+.|+++..++-+|-+|.-.. .-.++.++.++||.++|+|.-+..-+|-...++|++++|+.
T Consensus 169 ~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~lLA~~afe~g~~~~A~~ 248 (287)
T COG4235 169 LGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSLLAFAAFEQGDYAEAAA 248 (287)
T ss_pred hcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHH
Confidence 478999999999999999999999999998777654 45669999999999999999999999999999999999999
Q ss_pred HHHHchhhhccC
Q 026637 78 FMEECSSTWSSC 89 (235)
Q Consensus 78 ~l~~a~~~w~~~ 89 (235)
..+.-.+.-|..
T Consensus 249 ~Wq~lL~~lp~~ 260 (287)
T COG4235 249 AWQMLLDLLPAD 260 (287)
T ss_pred HHHHHHhcCCCC
Confidence 988888776653
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.0021 Score=57.52 Aligned_cols=99 Identities=11% Similarity=0.034 Sum_probs=88.9
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHchhhhccCCcchhHHHHHHH
Q 026637 25 FGILAFSLLELGQMSDAEEAAKKGLKINKHD---CWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHV 101 (235)
Q Consensus 25 ~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~d---awA~halahvl~~~Gr~~egi~~l~~a~~~w~~~~~~l~~H~~WHl 101 (235)
....|+.+...|+|..|+..++.-+..=|++ +.|+..||.+++.+|+++++...+.+..+.||.+|--- -...-+
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KAp--dallKl 221 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAP--DALLKL 221 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCCh--HHHHHH
Confidence 7788999999999999999999999999998 58999999999999999999999999999999977331 233469
Q ss_pred HHHHHhCCCCHHHHHHHHHhhchhh
Q 026637 102 ALCYLEGHSPMRKVLEIYDNHIWKE 126 (235)
Q Consensus 102 AL~~le~G~~~deAl~~yd~~i~~~ 126 (235)
|.+..++| +.|+|-..|++.|.+.
T Consensus 222 g~~~~~l~-~~d~A~atl~qv~k~Y 245 (262)
T COG1729 222 GVSLGRLG-NTDEACATLQQVIKRY 245 (262)
T ss_pred HHHHHHhc-CHHHHHHHHHHHHHHC
Confidence 99999998 9999999999998874
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.014 Score=61.59 Aligned_cols=81 Identities=19% Similarity=0.210 Sum_probs=41.0
Q ss_pred CChhhHHHHHHhhcCCC-CCChhHHHHHHHHHHHhCCHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 026637 2 GRPDLCFDIIHQVLPYN-QQEDFIFGILAFSLLELGQMSDAEEAAKKGLK--INKHDCWSQHALCHVLQHDCCFKEAVQF 78 (235)
Q Consensus 2 G~~~~al~~~~ral~~~-p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~--L~P~dawA~halahvl~~~Gr~~egi~~ 78 (235)
|+.+.++..+++..... ..+...++.+--++...|++++|.+++++..+ +.|| ...+..+...+...|+.++|...
T Consensus 486 G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD-~vTYnsLI~a~~k~G~~deA~~l 564 (1060)
T PLN03218 486 GKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPD-RVVFNALISACGQSGAVDRAFDV 564 (1060)
T ss_pred cCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHCCCHHHHHHH
Confidence 45555555555554432 12444455555555555555555555555433 2332 34555555555555555555555
Q ss_pred HHHch
Q 026637 79 MEECS 83 (235)
Q Consensus 79 l~~a~ 83 (235)
+++..
T Consensus 565 f~eM~ 569 (1060)
T PLN03218 565 LAEMK 569 (1060)
T ss_pred HHHHH
Confidence 55443
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.0078 Score=55.53 Aligned_cols=118 Identities=16% Similarity=0.124 Sum_probs=83.8
Q ss_pred ChhhHHHHHHhhcCCCCCC-----hhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 026637 3 RPDLCFDIIHQVLPYNQQE-----DFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQ 77 (235)
Q Consensus 3 ~~~~al~~~~ral~~~p~~-----~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~ 77 (235)
++++|.+.+++.+.+.|+. +.++--+|-......++++|.....+|++-||+..-|---+|.|...+|+++.|++
T Consensus 156 eW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~ 235 (389)
T COG2956 156 EWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVE 235 (389)
T ss_pred HHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHH
Confidence 5667777777777776643 24555666667777788888888888888888888888888888888888888888
Q ss_pred HHHHchhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026637 78 FMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 125 (235)
Q Consensus 78 ~l~~a~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~ 125 (235)
.+++..+.+|..- .-+.--+.-+|-..| +.++.+....+.+..
T Consensus 236 ~~e~v~eQn~~yl----~evl~~L~~~Y~~lg-~~~~~~~fL~~~~~~ 278 (389)
T COG2956 236 ALERVLEQNPEYL----SEVLEMLYECYAQLG-KPAEGLNFLRRAMET 278 (389)
T ss_pred HHHHHHHhChHHH----HHHHHHHHHHHHHhC-CHHHHHHHHHHHHHc
Confidence 8887777775532 223334666676776 777777777776665
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.00067 Score=65.48 Aligned_cols=88 Identities=15% Similarity=0.119 Sum_probs=78.2
Q ss_pred CChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 026637 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEE 81 (235)
Q Consensus 2 G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~~ 81 (235)
|+++.+.....+++..+|+|+-.+++.|.++...|.+.+|.+-+..+++|||+..-++..-|+++...-+++.+++-++.
T Consensus 372 gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~e 451 (539)
T KOG0548|consen 372 GDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQE 451 (539)
T ss_pred cCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78888888888899889999999999999999999999999999999999999999999999999999999999988888
Q ss_pred chhhhccC
Q 026637 82 CSSTWSSC 89 (235)
Q Consensus 82 a~~~w~~~ 89 (235)
+....|++
T Consensus 452 ale~dp~~ 459 (539)
T KOG0548|consen 452 ALELDPSN 459 (539)
T ss_pred HHhcCchh
Confidence 88887764
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.0013 Score=52.79 Aligned_cols=81 Identities=16% Similarity=0.127 Sum_probs=71.1
Q ss_pred CCChhhHHHHHHhhcCCCCCC---hhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 026637 1 MGRPDLCFDIIHQVLPYNQQE---DFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQ 77 (235)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~---~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~ 77 (235)
.|+++++....++++...|+. +.+...+|.++...|+|++|....+. +.-+|-.+.+...+|.++..+|+.++|+.
T Consensus 61 ~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~ 139 (145)
T PF09976_consen 61 QGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQ-IPDEAFKALAAELLGDIYLAQGDYDEARA 139 (145)
T ss_pred CCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHh-ccCcchHHHHHHHHHHHHHHCCCHHHHHH
Confidence 389999999999999977665 45778899999999999999999866 56677778999999999999999999999
Q ss_pred HHHHc
Q 026637 78 FMEEC 82 (235)
Q Consensus 78 ~l~~a 82 (235)
.++++
T Consensus 140 ~y~~A 144 (145)
T PF09976_consen 140 AYQKA 144 (145)
T ss_pred HHHHh
Confidence 98875
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.0019 Score=60.61 Aligned_cols=120 Identities=16% Similarity=0.064 Sum_probs=92.5
Q ss_pred CChhhHHHHHHhhcCCCC-------CCh--------hHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 026637 2 GRPDLCFDIIHQVLPYNQ-------QED--------FIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVL 66 (235)
Q Consensus 2 G~~~~al~~~~ral~~~p-------~~~--------~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl 66 (235)
|++..|....+||+..-+ .+. -.|.++|+++...++|.+|+..+.++|++.|+|+-|++..|.++
T Consensus 222 gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~ 301 (397)
T KOG0543|consen 222 GKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQAL 301 (397)
T ss_pred chHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHH
Confidence 677888888888777422 111 47899999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHchhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchhh
Q 026637 67 QHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE 126 (235)
Q Consensus 67 ~~~Gr~~egi~~l~~a~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~~ 126 (235)
...|+++.|+..++++....|. |- ..++- -..+..-..- ..+...++|.+...+.
T Consensus 302 l~~~e~~~A~~df~ka~k~~P~-Nk--a~~~e-l~~l~~k~~~-~~~kekk~y~~mF~k~ 356 (397)
T KOG0543|consen 302 LALGEYDLARDDFQKALKLEPS-NK--AARAE-LIKLKQKIRE-YEEKEKKMYANMFAKL 356 (397)
T ss_pred HhhccHHHHHHHHHHHHHhCCC-cH--HHHHH-HHHHHHHHHH-HHHHHHHHHHHHhhcc
Confidence 9999999999999999999988 41 12221 1222222222 3455678888887763
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.00052 Score=60.31 Aligned_cols=89 Identities=17% Similarity=0.089 Sum_probs=84.2
Q ss_pred CChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 026637 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEE 81 (235)
Q Consensus 2 G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~~ 81 (235)
|=.+-+|--..+++...|.-|.+.+.+|.-+.+.|+||.|-+++.--++|+|..-+|+-+.|-.+++-||+.-|.+-+.+
T Consensus 79 GL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~ 158 (297)
T COG4785 79 GLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLA 158 (297)
T ss_pred hHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHH
Confidence 55667788889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhccCC
Q 026637 82 CSSTWSSCS 90 (235)
Q Consensus 82 a~~~w~~~~ 90 (235)
.-...|++|
T Consensus 159 fYQ~D~~DP 167 (297)
T COG4785 159 FYQDDPNDP 167 (297)
T ss_pred HHhcCCCCh
Confidence 999999987
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.023 Score=58.04 Aligned_cols=90 Identities=13% Similarity=0.122 Sum_probs=45.8
Q ss_pred HHHHHHhCCCCHHHHHHHHHhhchhhhcCCCCCchHhHhHHHHHHHHHHhcCcccccccchHHHHHHHHhhhcchhcchh
Q 026637 101 VALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNALGLLLRVYVRGELDVFGNRLKVLADCVADQANWYLECHL 180 (235)
Q Consensus 101 lAL~~le~G~~~deAl~~yd~~i~~~~~~~~~~~~~~~~da~sLL~Rl~l~G~~~~~g~rw~~la~~~~~~~~~~~~~F~ 180 (235)
+-..|...| +.++|+++|++.+..+. +.+......++.+++ -.| ++++-...+..-...+...-+
T Consensus 560 lI~~~~~~G-~~~~A~~lf~~M~~~g~-~Pd~~T~~~ll~a~~------~~g-------~v~ea~~~f~~M~~~~gi~P~ 624 (857)
T PLN03077 560 LLTGYVAHG-KGSMAVELFNRMVESGV-NPDEVTFISLLCACS------RSG-------MVTQGLEYFHSMEEKYSITPN 624 (857)
T ss_pred HHHHHHHcC-CHHHHHHHHHHHHHcCC-CCCcccHHHHHHHHh------hcC-------hHHHHHHHHHHHHHHhCCCCc
Confidence 445555666 78888888887766542 222222222222222 111 233333333321111111112
Q ss_pred hHHH---HHHHhcCCCchHHHHHHHHHH
Q 026637 181 DLLI---LWALANTGEVSKAEDLLKGLK 205 (235)
Q Consensus 181 d~H~---~~al~~ag~~~~~~~ll~~~~ 205 (235)
-.|| +-+|+++|+.+++.++++.+.
T Consensus 625 ~~~y~~lv~~l~r~G~~~eA~~~~~~m~ 652 (857)
T PLN03077 625 LKHYACVVDLLGRAGKLTEAYNFINKMP 652 (857)
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHCC
Confidence 2343 567899999999999998873
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.0088 Score=58.41 Aligned_cols=143 Identities=15% Similarity=0.034 Sum_probs=106.2
Q ss_pred hHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhhccCCcchhHHHHHHHH
Q 026637 23 FIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVA 102 (235)
Q Consensus 23 ~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~~a~~~w~~~~~~l~~H~~WHlA 102 (235)
|++..+|--+-..|++++|.+...+|++.+|+.+.-+...|.++-..|++++|.++|+.+......+- .-|. -.+
T Consensus 195 w~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DR----yiNs-K~a 269 (517)
T PF12569_consen 195 WTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADR----YINS-KCA 269 (517)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhH----HHHH-HHH
Confidence 67788888899999999999999999999999999999999999999999999999999999988862 2343 467
Q ss_pred HHHHhCCCCHHHHHHHHHhhchhhhcCCCCCchHhHhHHHHHHH---------HHHhcCcccccccchHHHHHHHHhhhc
Q 026637 103 LCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNALGLLL---------RVYVRGELDVFGNRLKVLADCVADQAN 173 (235)
Q Consensus 103 L~~le~G~~~deAl~~yd~~i~~~~~~~~~~~~~~~~da~sLL~---------Rl~l~G~~~~~g~rw~~la~~~~~~~~ 173 (235)
-+.|..| ++++|.++...-.+.+ . .+..++.|-=.+-| |..-.|.. =.|+..|........+
T Consensus 270 Ky~LRa~-~~e~A~~~~~~Ftr~~--~---~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~A---Lk~~~~v~k~f~~~~~ 340 (517)
T PF12569_consen 270 KYLLRAG-RIEEAEKTASLFTRED--V---DPLSNLNDMQCMWFETECAEAYLRQGDYGLA---LKRFHAVLKHFDDFEE 340 (517)
T ss_pred HHHHHCC-CHHHHHHHHHhhcCCC--C---CcccCHHHHHHHHHHHHHHHHHHHHhhHHHH---HHHHHHHHHHHHHHhc
Confidence 7788887 9999999986655442 1 23444444333333 32222221 2467777766665444
Q ss_pred chhcchhhHH
Q 026637 174 WYLECHLDLL 183 (235)
Q Consensus 174 ~~~~~F~d~H 183 (235)
|.. |+|
T Consensus 341 DQf----DFH 346 (517)
T PF12569_consen 341 DQF----DFH 346 (517)
T ss_pred ccc----cHH
Confidence 444 788
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.012 Score=58.63 Aligned_cols=193 Identities=15% Similarity=0.053 Sum_probs=101.7
Q ss_pred CChhhHHHHHHhhcCC-CCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 026637 2 GRPDLCFDIIHQVLPY-NQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME 80 (235)
Q Consensus 2 G~~~~al~~~~ral~~-~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~ 80 (235)
|+.+++....+..+.. .+.+...++.+--++..+|++++|++++++..+ .|...+.++...+...|+.++|+..++
T Consensus 339 g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~---~d~~t~n~lI~~y~~~G~~~~A~~lf~ 415 (697)
T PLN03081 339 ALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR---KNLISWNALIAGYGNHGRGTKAVEMFE 415 (697)
T ss_pred cchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHHcCCHHHHHHHHH
Confidence 3444444444444443 244555556666666677777777777776543 355677777777777777777777777
Q ss_pred HchhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchhhhcCCCCCchHhH----------hHHHHHHHHHHh
Q 026637 81 ECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVY----------LNALGLLLRVYV 150 (235)
Q Consensus 81 ~a~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~~~~~~~~~~~~~~----------~da~sLL~Rl~l 150 (235)
+....-.. |+. ..+-.+-.++...| .+++++++|+.......-+++...+.-+ -+|..++=+
T Consensus 416 ~M~~~g~~-Pd~---~T~~~ll~a~~~~g-~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~--- 487 (697)
T PLN03081 416 RMIAEGVA-PNH---VTFLAVLSACRYSG-LSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRR--- 487 (697)
T ss_pred HHHHhCCC-CCH---HHHHHHHHHHhcCC-cHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHH---
Confidence 76544322 221 11112333344455 7777777776665421011111111112 233333211
Q ss_pred cCcccccccchHHHHHHHHhhh----------------cchhcchhhHHHHHHHhcCCCchHHHHHHHHHHHHh
Q 026637 151 RGELDVFGNRLKVLADCVADQA----------------NWYLECHLDLLILWALANTGEVSKAEDLLKGLKSRH 208 (235)
Q Consensus 151 ~G~~~~~g~rw~~la~~~~~~~----------------~~~~~~F~d~H~~~al~~ag~~~~~~~ll~~~~~~~ 208 (235)
.+..++ ..-|..|......+. +.....+ .-.+-.++..|+.+.+.++++.|++..
T Consensus 488 ~~~~p~-~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y--~~L~~~y~~~G~~~~A~~v~~~m~~~g 558 (697)
T PLN03081 488 APFKPT-VNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNY--VVLLNLYNSSGRQAEAAKVVETLKRKG 558 (697)
T ss_pred CCCCCC-HHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcch--HHHHHHHHhCCCHHHHHHHHHHHHHcC
Confidence 122211 234666655543321 1111112 222446889999999999999999875
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.0042 Score=49.42 Aligned_cols=85 Identities=21% Similarity=0.303 Sum_probs=64.4
Q ss_pred CChhhHHHHHHhhcCCCCC--------Chh--------------HHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHH
Q 026637 2 GRPDLCFDIIHQVLPYNQQ--------EDF--------------IFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQ 59 (235)
Q Consensus 2 G~~~~al~~~~ral~~~p~--------~~~--------------~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~ 59 (235)
|+.+......++++..+.+ ++| ++.-++-.+.+.|++++|+..++++++++|.|-.++
T Consensus 20 ~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~ 99 (146)
T PF03704_consen 20 GDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRALALDPYDEEAY 99 (146)
T ss_dssp T-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHH
T ss_pred CCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHH
Confidence 5777888888999987632 122 233344467789999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHchhhh
Q 026637 60 HALCHVLQHDCCFKEAVQFMEECSSTW 86 (235)
Q Consensus 60 halahvl~~~Gr~~egi~~l~~a~~~w 86 (235)
-.+-.++..+|+..+++..+++..+..
T Consensus 100 ~~lm~~~~~~g~~~~A~~~Y~~~~~~l 126 (146)
T PF03704_consen 100 RLLMRALAAQGRRAEALRVYERYRRRL 126 (146)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 999999999999999999998886554
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.00097 Score=56.61 Aligned_cols=85 Identities=18% Similarity=0.137 Sum_probs=67.8
Q ss_pred hhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCC----------HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC--
Q 026637 4 PDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQ----------MSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCC-- 71 (235)
Q Consensus 4 ~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~----------~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr-- 71 (235)
++.++...+.....+|.|+..+..-|.+|.|..+ +.+|+.-+++||.|||+...|+..+|.++..+|.
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~ 86 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLT 86 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhc
Confidence 4678889999999999999999999999998744 4568888999999999999999999999988776
Q ss_pred ---------HHHHHHHHHHchhhhcc
Q 026637 72 ---------FKEAVQFMEECSSTWSS 88 (235)
Q Consensus 72 ---------~~egi~~l~~a~~~w~~ 88 (235)
+++|...++++....|.
T Consensus 87 ~d~~~A~~~F~kA~~~FqkAv~~~P~ 112 (186)
T PF06552_consen 87 PDTAEAEEYFEKATEYFQKAVDEDPN 112 (186)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHH-TT
T ss_pred CChHHHHHHHHHHHHHHHHHHhcCCC
Confidence 56667777777777766
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.00059 Score=41.12 Aligned_cols=33 Identities=18% Similarity=0.302 Sum_probs=28.8
Q ss_pred hHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCC
Q 026637 23 FIFGILAFSLLELGQMSDAEEAAKKGLKINKHD 55 (235)
Q Consensus 23 ~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~d 55 (235)
.++..+|..+...|++++|+..+++||+++|++
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 567889999999999999999999999999975
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.0066 Score=61.78 Aligned_cols=114 Identities=11% Similarity=0.090 Sum_probs=67.8
Q ss_pred CChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 026637 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEE 81 (235)
Q Consensus 2 G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~~ 81 (235)
||.++|...+..++..+|..+-++.++|-++++.|+...+-...-.|--|||+|..-+-.++--...+|..++|+-.+.+
T Consensus 153 g~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~r 232 (895)
T KOG2076|consen 153 GDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYSR 232 (895)
T ss_pred CCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 56666666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred chhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHh
Q 026637 82 CSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDN 121 (235)
Q Consensus 82 a~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~ 121 (235)
++...|. + --+.|--+..+...| ++-+|++-|.+
T Consensus 233 AI~~~p~-n----~~~~~ers~L~~~~G-~~~~Am~~f~~ 266 (895)
T KOG2076|consen 233 AIQANPS-N----WELIYERSSLYQKTG-DLKRAMETFLQ 266 (895)
T ss_pred HHhcCCc-c----hHHHHHHHHHHHHhC-hHHHHHHHHHH
Confidence 6555544 2 123344444444444 45555554433
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.053 Score=55.43 Aligned_cols=182 Identities=13% Similarity=0.176 Sum_probs=111.2
Q ss_pred CChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 026637 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLK--INKHDCWSQHALCHVLQHDCCFKEAVQFM 79 (235)
Q Consensus 2 G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~--L~P~dawA~halahvl~~~Gr~~egi~~l 79 (235)
|+.++|+..+.+. +.+...++.+--++...|+.++|.+++++..+ +.||.. ....+-.++...|+.++|+.++
T Consensus 538 G~~~~A~~~f~~~----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~-T~~~ll~a~~~~g~v~ea~~~f 612 (857)
T PLN03077 538 GRMNYAWNQFNSH----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEV-TFISLLCACSRSGMVTQGLEYF 612 (857)
T ss_pred CCHHHHHHHHHhc----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcc-cHHHHHHHHhhcChHHHHHHHH
Confidence 6667777777665 45666777777788888999999998887766 456543 5667777788889999999888
Q ss_pred HHchhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchhhhcCCCCCchHhHhHHHHHHHHHHhcCccccccc
Q 026637 80 EECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNALGLLLRVYVRGELDVFGN 159 (235)
Q Consensus 80 ~~a~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~~~~~~~~~~~~~~~da~sLL~Rl~l~G~~~~~g~ 159 (235)
++..+..+-.|+. .|+. -+-..+-..| ++++|.+++++.- . +.+......+++++ .+.|- +..+.
T Consensus 613 ~~M~~~~gi~P~~--~~y~-~lv~~l~r~G-~~~eA~~~~~~m~---~-~pd~~~~~aLl~ac------~~~~~-~e~~e 677 (857)
T PLN03077 613 HSMEEKYSITPNL--KHYA-CVVDLLGRAG-KLTEAYNFINKMP---I-TPDPAVWGALLNAC------RIHRH-VELGE 677 (857)
T ss_pred HHHHHHhCCCCch--HHHH-HHHHHHHhCC-CHHHHHHHHHHCC---C-CCCHHHHHHHHHHH------HHcCC-hHHHH
Confidence 8887655544543 3332 2445555666 8899998887751 1 11111222333332 22232 22222
Q ss_pred chHHHHHHHHhhhcchhcchhhHHHHHHHhcCCCchHHHHHHHHHHHHh
Q 026637 160 RLKVLADCVADQANWYLECHLDLLILWALANTGEVSKAEDLLKGLKSRH 208 (235)
Q Consensus 160 rw~~la~~~~~~~~~~~~~F~d~H~~~al~~ag~~~~~~~ll~~~~~~~ 208 (235)
.+++.+.+-.++.... -+...-.++.+|+.+.+.++.+.|++..
T Consensus 678 ---~~a~~l~~l~p~~~~~--y~ll~n~ya~~g~~~~a~~vr~~M~~~g 721 (857)
T PLN03077 678 ---LAAQHIFELDPNSVGY--YILLCNLYADAGKWDEVARVRKTMRENG 721 (857)
T ss_pred ---HHHHHHHhhCCCCcch--HHHHHHHHHHCCChHHHHHHHHHHHHcC
Confidence 2233322211121111 1122235788999999999999999874
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.027 Score=53.70 Aligned_cols=156 Identities=13% Similarity=0.119 Sum_probs=119.7
Q ss_pred CChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 026637 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEE 81 (235)
Q Consensus 2 G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~~ 81 (235)
.++..++..+++++..+|.+..++-+.|-.|...|+..+|.-.+|.|.-|.|-+-..+--+-|.|.-+|+++||......
T Consensus 314 K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~ 393 (564)
T KOG1174|consen 314 KKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANW 393 (564)
T ss_pred hhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHH
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred chhhhccCCcchhHHHHHHH-HHHHHhCCCCHHHHHHHHHhhchhhhcCCCCCchHhHhHHHHHHHHHH-hcCccccccc
Q 026637 82 CSSTWSSCSSFMYTHNWWHV-ALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNALGLLLRVY-VRGELDVFGN 159 (235)
Q Consensus 82 a~~~w~~~~~~l~~H~~WHl-AL~~le~G~~~deAl~~yd~~i~~~~~~~~~~~~~~~~da~sLL~Rl~-l~G~~~~~g~ 159 (235)
+.+..+... ++--. + ++.++....--|+|.+.|++.+..+ ++ ++-|+-++--|. ++|-. +|
T Consensus 394 ~~~~~~~sA---~~LtL--~g~~V~~~dp~~rEKAKkf~ek~L~~~---P~------Y~~AV~~~AEL~~~Eg~~---~D 456 (564)
T KOG1174|consen 394 TIRLFQNSA---RSLTL--FGTLVLFPDPRMREKAKKFAEKSLKIN---PI------YTPAVNLIAELCQVEGPT---KD 456 (564)
T ss_pred HHHHhhcch---hhhhh--hcceeeccCchhHHHHHHHHHhhhccC---Cc------cHHHHHHHHHHHHhhCcc---ch
Confidence 888877632 11111 2 2344443222589999999999873 22 455555554444 35543 66
Q ss_pred chHHHHHHHHhhhcc
Q 026637 160 RLKVLADCVADQANW 174 (235)
Q Consensus 160 rw~~la~~~~~~~~~ 174 (235)
-.+-|-.++...++.
T Consensus 457 ~i~LLe~~L~~~~D~ 471 (564)
T KOG1174|consen 457 IIKLLEKHLIIFPDV 471 (564)
T ss_pred HHHHHHHHHhhcccc
Confidence 666666666654443
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.011 Score=58.91 Aligned_cols=117 Identities=10% Similarity=0.068 Sum_probs=104.8
Q ss_pred CCChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 026637 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME 80 (235)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~ 80 (235)
+|..+++++..+++|..+|+++-++-|+|-+++..++.+.|.+.+-..+...|+.+--+-.++..-+..|..-.|...++
T Consensus 664 ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ild 743 (913)
T KOG0495|consen 664 LDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILD 743 (913)
T ss_pred hhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHH
Confidence 36788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HchhhhccCCcchhHHHHHHHHHHHHh--CCCCHHHHHHHHHhhchh
Q 026637 81 ECSSTWSSCSSFMYTHNWWHVALCYLE--GHSPMRKVLEIYDNHIWK 125 (235)
Q Consensus 81 ~a~~~w~~~~~~l~~H~~WHlAL~~le--~G~~~deAl~~yd~~i~~ 125 (235)
+..-.+|... -+| ++...+| .| ..+.|..+..+++..
T Consensus 744 rarlkNPk~~-----~lw--le~Ir~ElR~g-n~~~a~~lmakALQe 782 (913)
T KOG0495|consen 744 RARLKNPKNA-----LLW--LESIRMELRAG-NKEQAELLMAKALQE 782 (913)
T ss_pred HHHhcCCCcc-----hhH--HHHHHHHHHcC-CHHHHHHHHHHHHHh
Confidence 9999998843 245 5555544 66 899999999888765
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.011 Score=51.98 Aligned_cols=104 Identities=11% Similarity=-0.040 Sum_probs=82.6
Q ss_pred ChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHH---HHHHHHHHHcCCHHHHHHHHHHchhhhccCCcchhHHH
Q 026637 21 EDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQ---HALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHN 97 (235)
Q Consensus 21 ~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~---halahvl~~~Gr~~egi~~l~~a~~~w~~~~~~l~~H~ 97 (235)
.+..+.-.|..+.+.|+|++|++.+++.+...|+.+++. ..+|-+++..|++++|+..+++.....|+.|..-...+
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y 110 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLY 110 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHH
Confidence 445566677888899999999999999999999999887 78899999999999999999999999999775533333
Q ss_pred HHHHHHHHHhCC---------------C--CHHHHHHHHHhhchhh
Q 026637 98 WWHVALCYLEGH---------------S--PMRKVLEIYDNHIWKE 126 (235)
Q Consensus 98 ~WHlAL~~le~G---------------~--~~deAl~~yd~~i~~~ 126 (235)
- +|++++..+ + ...+|+..|++-|...
T Consensus 111 ~--~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~y 154 (243)
T PRK10866 111 M--RGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGY 154 (243)
T ss_pred H--HHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHC
Confidence 3 666543332 0 1356778888888874
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.0046 Score=61.79 Aligned_cols=140 Identities=13% Similarity=0.050 Sum_probs=113.4
Q ss_pred CChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 026637 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEE 81 (235)
Q Consensus 2 G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~~ 81 (235)
+++.++....++.+..+|.....+..+|.+-.+.+++..|.+.+-+.+.++|++..++.+++-.+...|+-.++..-+.+
T Consensus 499 ~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~E 578 (777)
T KOG1128|consen 499 KDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKE 578 (777)
T ss_pred hhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHH
Confidence 67889999999999999988877777777777889999999999999999999999999999999999999999999999
Q ss_pred chhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchhhhcCCCCCchHhHhHHHHHHHHHHh
Q 026637 82 CSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNALGLLLRVYV 150 (235)
Q Consensus 82 a~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~~~~~~~~~~~~~~~da~sLL~Rl~l 150 (235)
+..-.-. | . -+|-+.-+...+-| .+|+|++.|.+.+.-+..++ ..+++.+-+-.+-++..
T Consensus 579 AlKcn~~-~-w---~iWENymlvsvdvg-e~eda~~A~~rll~~~~~~~---d~~vl~~iv~~~~~~~~ 638 (777)
T KOG1128|consen 579 ALKCNYQ-H-W---QIWENYMLVSVDVG-EFEDAIKAYHRLLDLRKKYK---DDEVLLIIVRTVLEGMT 638 (777)
T ss_pred HhhcCCC-C-C---eeeechhhhhhhcc-cHHHHHHHHHHHHHhhhhcc---cchhhHHHHHHHHhhcc
Confidence 9877622 2 1 25666777788888 99999999988877653222 34445555555555554
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.0056 Score=60.03 Aligned_cols=176 Identities=14% Similarity=0.056 Sum_probs=106.9
Q ss_pred CChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 026637 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEE 81 (235)
Q Consensus 2 G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~~ 81 (235)
|+++++...+.+++...|++..+..+.=.++.+.+.|++|....+.=..+.-.+..- +--+.+++..++.+|++.-++.
T Consensus 26 ~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~-fEKAYc~Yrlnk~Dealk~~~~ 104 (652)
T KOG2376|consen 26 GEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFF-FEKAYCEYRLNKLDEALKTLKG 104 (652)
T ss_pred hHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhh-HHHHHHHHHcccHHHHHHHHhc
Confidence 567788888888888888888888888888888888888876655444333232222 4677888888888888888775
Q ss_pred chhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchhhhcCCCCCchHhHhHHHHHHHHHHhcCcccccccch
Q 026637 82 CSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNALGLLLRVYVRGELDVFGNRL 161 (235)
Q Consensus 82 a~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~~~~~~~~~~~~~~~da~sLL~Rl~l~G~~~~~g~rw 161 (235)
..+..+. .-|. -|-..+.+| +||+++.+|..-+.-. .....+ -=-++|+-+--.. +++ |
T Consensus 105 ~~~~~~~-----ll~L---~AQvlYrl~-~ydealdiY~~L~kn~-----~dd~d~-~~r~nl~a~~a~l-----~~~-~ 163 (652)
T KOG2376|consen 105 LDRLDDK-----LLEL---RAQVLYRLE-RYDEALDIYQHLAKNN-----SDDQDE-ERRANLLAVAAAL-----QVQ-L 163 (652)
T ss_pred ccccchH-----HHHH---HHHHHHHHh-hHHHHHHHHHHHHhcC-----CchHHH-HHHHHHHHHHHhh-----hHH-H
Confidence 5444321 1344 566666777 8888888885443331 111111 1112222221111 112 3
Q ss_pred HHHHHHHHhhhcchhcchhhHHHHHHHhcCCCchHHHHHHHHH
Q 026637 162 KVLADCVADQANWYLECHLDLLILWALANTGEVSKAEDLLKGL 204 (235)
Q Consensus 162 ~~la~~~~~~~~~~~~~F~d~H~~~al~~ag~~~~~~~ll~~~ 204 (235)
....+... .+.+-+.||.. ..++..|+...|.++|+.-
T Consensus 164 ~q~v~~v~--e~syel~yN~A---c~~i~~gky~qA~elL~kA 201 (652)
T KOG2376|consen 164 LQSVPEVP--EDSYELLYNTA---CILIENGKYNQAIELLEKA 201 (652)
T ss_pred HHhccCCC--cchHHHHHHHH---HHHHhcccHHHHHHHHHHH
Confidence 33322222 33566667764 4778899999999998877
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.0031 Score=57.07 Aligned_cols=86 Identities=17% Similarity=0.125 Sum_probs=66.8
Q ss_pred hhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHc
Q 026637 4 PDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCF-KEAVQFMEEC 82 (235)
Q Consensus 4 ~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~-~egi~~l~~a 82 (235)
...+.-.++......|..+..+..+|.+...+|+|++|++...+|+..+|+|+.++.++.-+...+|+. ++.-+++.+-
T Consensus 183 ~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL 262 (290)
T PF04733_consen 183 YQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQL 262 (290)
T ss_dssp CCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHH
Confidence 455666666666666778889999999999999999999999999999999999999999999999999 5566677777
Q ss_pred hhhhccC
Q 026637 83 SSTWSSC 89 (235)
Q Consensus 83 ~~~w~~~ 89 (235)
....|..
T Consensus 263 ~~~~p~h 269 (290)
T PF04733_consen 263 KQSNPNH 269 (290)
T ss_dssp HHHTTTS
T ss_pred HHhCCCC
Confidence 7776653
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.02 Score=52.95 Aligned_cols=116 Identities=14% Similarity=0.042 Sum_probs=94.4
Q ss_pred ChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 026637 3 RPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHD-CWSQHALCHVLQHDCCFKEAVQFMEE 81 (235)
Q Consensus 3 ~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~d-awA~halahvl~~~Gr~~egi~~l~~ 81 (235)
+.+.++..+.||+..+|...-+--++|-+....|+|..|.+..++.++-||.. +...-.+.++|...|+.++++.|+.+
T Consensus 195 ~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~ 274 (389)
T COG2956 195 DVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRR 274 (389)
T ss_pred hHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 56788999999999999999999999999999999999999999999999988 78888999999999999999999999
Q ss_pred chhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026637 82 CSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 125 (235)
Q Consensus 82 a~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~ 125 (235)
+.+..+... . -+- ++-.-.+..| .++|.....+.+.+
T Consensus 275 ~~~~~~g~~-~---~l~--l~~lie~~~G-~~~Aq~~l~~Ql~r 311 (389)
T COG2956 275 AMETNTGAD-A---ELM--LADLIELQEG-IDAAQAYLTRQLRR 311 (389)
T ss_pred HHHccCCcc-H---HHH--HHHHHHHhhC-hHHHHHHHHHHHhh
Confidence 999887742 1 121 3333333333 67777777777776
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.0095 Score=48.72 Aligned_cols=103 Identities=12% Similarity=0.076 Sum_probs=81.9
Q ss_pred ChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHchhhhccCCcchhHHH
Q 026637 21 EDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDC---WSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHN 97 (235)
Q Consensus 21 ~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~da---wA~halahvl~~~Gr~~egi~~l~~a~~~w~~~~~~l~~H~ 97 (235)
.+..+..-|....+.|+|.+|++..+.-..--|..+ .|.-.++.+++.+|++++|++-+++.+++.|..|.. .-.
T Consensus 9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~v--dYa 86 (142)
T PF13512_consen 9 SPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNV--DYA 86 (142)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCc--cHH
Confidence 345667778888899999999999888888877765 567778999999999999999999999999987754 234
Q ss_pred HHHHHHHHHhCCCC---------------HHHHHHHHHhhchhh
Q 026637 98 WWHVALCYLEGHSP---------------MRKVLEIYDNHIWKE 126 (235)
Q Consensus 98 ~WHlAL~~le~G~~---------------~deAl~~yd~~i~~~ 126 (235)
+-..||.+++.. + ..+|+.-|.+.|..-
T Consensus 87 ~Y~~gL~~~~~~-~~~~~~~~~~drD~~~~~~A~~~f~~lv~~y 129 (142)
T PF13512_consen 87 YYMRGLSYYEQD-EGSLQSFFRSDRDPTPARQAFRDFEQLVRRY 129 (142)
T ss_pred HHHHHHHHHHHh-hhHHhhhcccccCcHHHHHHHHHHHHHHHHC
Confidence 446888888875 6 888888888877653
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.0037 Score=60.50 Aligned_cols=87 Identities=14% Similarity=0.090 Sum_probs=84.1
Q ss_pred CChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 026637 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEE 81 (235)
Q Consensus 2 G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~~ 81 (235)
||++.+......++.++|.+...+++.+-++.-.|+|.+|.+-+.+.+.|||+=+-++..+|-+++-.|++++|+.-+.+
T Consensus 16 ~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~eA~~ay~~ 95 (539)
T KOG0548|consen 16 GDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEEAILAYSE 95 (539)
T ss_pred ccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhcc
Q 026637 82 CSSTWSS 88 (235)
Q Consensus 82 a~~~w~~ 88 (235)
-....|+
T Consensus 96 GL~~d~~ 102 (539)
T KOG0548|consen 96 GLEKDPS 102 (539)
T ss_pred HhhcCCc
Confidence 9888877
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.0032 Score=58.64 Aligned_cols=103 Identities=17% Similarity=0.065 Sum_probs=88.5
Q ss_pred CCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhhccCCcchhHHH
Q 026637 18 NQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHN 97 (235)
Q Consensus 18 ~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~~a~~~w~~~~~~l~~H~ 97 (235)
.|.+..-|--+|-.+..+|++..|...+-.|++++|++-.|+...|.|+.-.|+.+.|+.-+++....-|+ |+...+
T Consensus 34 ~~advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpD---F~~ARi 110 (504)
T KOG0624|consen 34 SPADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPD---FMAARI 110 (504)
T ss_pred CHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCcc---HHHHHH
Confidence 34556667777888889999999999999999999999999999999999999999999999999888744 666776
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHhhchhh
Q 026637 98 WWHVALCYLEGHSPMRKVLEIYDNHIWKE 126 (235)
Q Consensus 98 ~WHlAL~~le~G~~~deAl~~yd~~i~~~ 126 (235)
- -+..+|..| ++|+|..=|+..|..+
T Consensus 111 Q--Rg~vllK~G-ele~A~~DF~~vl~~~ 136 (504)
T KOG0624|consen 111 Q--RGVVLLKQG-ELEQAEADFDQVLQHE 136 (504)
T ss_pred H--hchhhhhcc-cHHHHHHHHHHHHhcC
Confidence 4 778888988 9999999998888763
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.0045 Score=56.02 Aligned_cols=100 Identities=20% Similarity=0.197 Sum_probs=82.0
Q ss_pred CChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHchhhhccCCcchhHHH
Q 026637 20 QEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCC--FKEAVQFMEECSSTWSSCSSFMYTHN 97 (235)
Q Consensus 20 ~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr--~~egi~~l~~a~~~w~~~~~~l~~H~ 97 (235)
+......+.-+++...||+|.|++..+..-..+.++.-..-+-++|...+|. +.++.-++++-....+..+ ...|
T Consensus 129 ~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~---~~ln 205 (290)
T PF04733_consen 129 GSLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTP---KLLN 205 (290)
T ss_dssp TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SH---HHHH
T ss_pred CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCH---HHHH
Confidence 5566777777899999999999999999999999999999999999999984 8999999999766654422 2334
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026637 98 WWHVALCYLEGHSPMRKVLEIYDNHIWK 125 (235)
Q Consensus 98 ~WHlAL~~le~G~~~deAl~~yd~~i~~ 125 (235)
-+|.+++.+| +|++|.+++.+.+..
T Consensus 206 --g~A~~~l~~~-~~~eAe~~L~~al~~ 230 (290)
T PF04733_consen 206 --GLAVCHLQLG-HYEEAEELLEEALEK 230 (290)
T ss_dssp --HHHHHHHHCT--HHHHHHHHHHHCCC
T ss_pred --HHHHHHHHhC-CHHHHHHHHHHHHHh
Confidence 4999999998 999999999988765
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.032 Score=45.66 Aligned_cols=70 Identities=9% Similarity=0.000 Sum_probs=55.7
Q ss_pred CChhhHHHHHHhhcCCCCCCh---hHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHHcCC
Q 026637 2 GRPDLCFDIIHQVLPYNQQED---FIFGILAFSLLELGQMSDAEEAAKKGLKINKHDC---WSQHALCHVLQHDCC 71 (235)
Q Consensus 2 G~~~~al~~~~ral~~~p~~~---~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~da---wA~halahvl~~~Gr 71 (235)
|+..+|....+.+..-+|..+ .+.-.++.++-.+|+|++|.+.++|-+.|+|+++ +|+.-.|.+...+..
T Consensus 24 ~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~~~~ 99 (142)
T PF13512_consen 24 GNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYEQDE 99 (142)
T ss_pred CCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHhh
Confidence 778888888888888777655 4778899999999999999999999999999997 455555555544443
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.012 Score=58.77 Aligned_cols=116 Identities=16% Similarity=0.117 Sum_probs=93.5
Q ss_pred CChhhHHHHHHhhcCCCCCChhHHHHHHH-HHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 026637 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAF-SLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME 80 (235)
Q Consensus 2 G~~~~al~~~~ral~~~p~~~~~~g~~Af-~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~ 80 (235)
||.++++..+.+++..+|++-.. ...++ ..-++.++++|..+..+|-+..|.-- .+.--++..-.+|..+|++.+++
T Consensus 598 gdv~~ar~il~~af~~~pnseei-wlaavKle~en~e~eraR~llakar~~sgTeR-v~mKs~~~er~ld~~eeA~rllE 675 (913)
T KOG0495|consen 598 GDVPAARVILDQAFEANPNSEEI-WLAAVKLEFENDELERARDLLAKARSISGTER-VWMKSANLERYLDNVEEALRLLE 675 (913)
T ss_pred CCcHHHHHHHHHHHHhCCCcHHH-HHHHHHHhhccccHHHHHHHHHHHhccCCcch-hhHHHhHHHHHhhhHHHHHHHHH
Confidence 78899999999999999984433 34455 45567799999999999999888754 56667788889999999999999
Q ss_pred HchhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026637 81 ECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 125 (235)
Q Consensus 81 ~a~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~ 125 (235)
++...+|.++ -+|--++..+-..+ +.+.|.+.|..-+..
T Consensus 676 e~lk~fp~f~-----Kl~lmlGQi~e~~~-~ie~aR~aY~~G~k~ 714 (913)
T KOG0495|consen 676 EALKSFPDFH-----KLWLMLGQIEEQME-NIEMAREAYLQGTKK 714 (913)
T ss_pred HHHHhCCchH-----HHHHHHhHHHHHHH-HHHHHHHHHHhcccc
Confidence 9999998853 36666777776776 899999999887665
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.0066 Score=50.82 Aligned_cols=85 Identities=15% Similarity=-0.056 Sum_probs=77.8
Q ss_pred CCChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 026637 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME 80 (235)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~ 80 (235)
.|+.++|...++-..-.+|.++...--+|-++...++|++|+..+-.|..+.++||-..+-.|-++.+.|+.++|..-++
T Consensus 50 ~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~A~~~f~ 129 (165)
T PRK15331 50 QGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAKARQCFE 129 (165)
T ss_pred CCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHHHHHHHH
Confidence 38899999999988888888877666778889999999999999999999999999999999999999999999999999
Q ss_pred Hchhh
Q 026637 81 ECSST 85 (235)
Q Consensus 81 ~a~~~ 85 (235)
.+...
T Consensus 130 ~a~~~ 134 (165)
T PRK15331 130 LVNER 134 (165)
T ss_pred HHHhC
Confidence 88873
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.0012 Score=40.72 Aligned_cols=33 Identities=18% Similarity=0.215 Sum_probs=30.9
Q ss_pred HHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHH
Q 026637 11 IHQVLPYNQQEDFIFGILAFSLLELGQMSDAEE 43 (235)
Q Consensus 11 ~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~ 43 (235)
.+|+++.+|+++.++..+|.++...|++++|++
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 578999999999999999999999999999974
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.0087 Score=52.17 Aligned_cols=87 Identities=14% Similarity=0.109 Sum_probs=79.9
Q ss_pred CChhhHHHHHHhhcCCCCCC-----hhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 026637 2 GRPDLCFDIIHQVLPYNQQE-----DFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAV 76 (235)
Q Consensus 2 G~~~~al~~~~ral~~~p~~-----~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi 76 (235)
|++.+|....++||..-|.- +-.+++.|.++...+....|+..+-+|++|||...-|+-..|-+|+..-.+++++
T Consensus 109 gdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~eeal 188 (271)
T KOG4234|consen 109 GDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKYEEAL 188 (271)
T ss_pred ccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhHHHHH
Confidence 88999999999999988853 4688999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHchhhhcc
Q 026637 77 QFMEECSSTWSS 88 (235)
Q Consensus 77 ~~l~~a~~~w~~ 88 (235)
.-+.+-....|.
T Consensus 189 eDyKki~E~dPs 200 (271)
T KOG4234|consen 189 EDYKKILESDPS 200 (271)
T ss_pred HHHHHHHHhCcc
Confidence 999988888765
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.015 Score=56.06 Aligned_cols=112 Identities=11% Similarity=0.047 Sum_probs=85.9
Q ss_pred CChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 026637 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEE 81 (235)
Q Consensus 2 G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~~ 81 (235)
|+.+.+......+|.-+..-..++.+.|...+..|++++|...+-+--++=.|++..+..++.+++...++..+|+|+-+
T Consensus 504 gd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q 583 (840)
T KOG2003|consen 504 GDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQ 583 (840)
T ss_pred CcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHH
Confidence 77888888888888877777788888888888888888888888888888888888888888888888888888888888
Q ss_pred chhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHH
Q 026637 82 CSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIY 119 (235)
Q Consensus 82 a~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~y 119 (235)
+...-|.+|.. .--+|-.|-.-| +-..|...|
T Consensus 584 ~~slip~dp~i-----lskl~dlydqeg-dksqafq~~ 615 (840)
T KOG2003|consen 584 ANSLIPNDPAI-----LSKLADLYDQEG-DKSQAFQCH 615 (840)
T ss_pred hcccCCCCHHH-----HHHHHHHhhccc-chhhhhhhh
Confidence 87777776632 223555554444 555555543
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.0086 Score=53.43 Aligned_cols=123 Identities=11% Similarity=0.090 Sum_probs=85.9
Q ss_pred CChhhHHHHHHhhcCCC--CCCh----hHHHHHHHHHHHhCCHHHHHHHHHHHHhh--CCCC----HHHHHHHHHHHHHc
Q 026637 2 GRPDLCFDIIHQVLPYN--QQED----FIFGILAFSLLELGQMSDAEEAAKKGLKI--NKHD----CWSQHALCHVLQHD 69 (235)
Q Consensus 2 G~~~~al~~~~ral~~~--p~~~----~~~g~~Af~L~e~g~~~~Ae~~arrAL~L--~P~d----awA~halahvl~~~ 69 (235)
|+++++.....++.... -++. ..+..-+-.+.+. ++++|+...++|+.+ .-++ +-.+-.+|.+++..
T Consensus 49 ~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~ 127 (282)
T PF14938_consen 49 KDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQ 127 (282)
T ss_dssp T-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCT
T ss_pred hccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHH
Confidence 56677777777776632 1222 2334444455444 999999999999997 2222 56788999999999
Q ss_pred -CCHHHHHHHHHHchhhhccCCcc-hhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchhh
Q 026637 70 -CCFKEAVQFMEECSSTWSSCSSF-MYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE 126 (235)
Q Consensus 70 -Gr~~egi~~l~~a~~~w~~~~~~-l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~~ 126 (235)
|++++|+..++++.......+.. ......-.+|.++...| +|++|+++|++.+...
T Consensus 128 ~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~-~y~~A~~~~e~~~~~~ 185 (282)
T PF14938_consen 128 LGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLG-RYEEAIEIYEEVAKKC 185 (282)
T ss_dssp T--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHTC
T ss_pred cCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHh
Confidence 99999999999998887664422 12235567999999998 9999999999887754
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.027 Score=47.91 Aligned_cols=104 Identities=15% Similarity=0.139 Sum_probs=76.5
Q ss_pred ChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHchhhhccCCcchhHHH
Q 026637 21 EDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDC---WSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHN 97 (235)
Q Consensus 21 ~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~da---wA~halahvl~~~Gr~~egi~~l~~a~~~w~~~~~~l~~H~ 97 (235)
.+..+.-.|..+.+.|+|.+|.+.+++.+...|+++ .|...++.+++..|++++++..+++.+...|+.+..- ..
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~--~A 81 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKAD--YA 81 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHH--HH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchh--hH
Confidence 445667788889999999999999999999999886 5677899999999999999999999999999976432 23
Q ss_pred HHHHHHHHHhCC----------CCHHHHHHHHHhhchhh
Q 026637 98 WWHVALCYLEGH----------SPMRKVLEIYDNHIWKE 126 (235)
Q Consensus 98 ~WHlAL~~le~G----------~~~deAl~~yd~~i~~~ 126 (235)
...+|++++... ....+|+..|...|...
T Consensus 82 ~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~y 120 (203)
T PF13525_consen 82 LYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRY 120 (203)
T ss_dssp HHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHC
Confidence 334666654421 03457888888888774
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.018 Score=53.86 Aligned_cols=123 Identities=11% Similarity=-0.007 Sum_probs=102.1
Q ss_pred CChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 026637 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEE 81 (235)
Q Consensus 2 G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~~ 81 (235)
|+...++...-.|++.+|++..+..-.|.++...|+-..|..=..|.|++.|+..-|--..|+|+..+|..++|.+-+..
T Consensus 52 ~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Gele~A~~DF~~ 131 (504)
T KOG0624|consen 52 GQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGELEQAEADFDQ 131 (504)
T ss_pred hhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhcccHHHHHHHHHH
Confidence 67788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhccCCcchh---------HH-HHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026637 82 CSSTWSSCSSFMY---------TH-NWWHVALCYLEGHSPMRKVLEIYDNHIWK 125 (235)
Q Consensus 82 a~~~w~~~~~~l~---------~H-~~WHlAL~~le~G~~~deAl~~yd~~i~~ 125 (235)
.....|+.+.... -| +.-|....++-.| |+..|++..+.-|..
T Consensus 132 vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~G-D~~~ai~~i~~llEi 184 (504)
T KOG0624|consen 132 VLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSG-DCQNAIEMITHLLEI 184 (504)
T ss_pred HHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCC-chhhHHHHHHHHHhc
Confidence 9888876332111 11 2233445555666 899999888665544
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.013 Score=60.51 Aligned_cols=119 Identities=15% Similarity=0.260 Sum_probs=94.6
Q ss_pred ChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc
Q 026637 3 RPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEEC 82 (235)
Q Consensus 3 ~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~~a 82 (235)
+.+.++...-|++..+|..+-+...+|-.+.+--++-+|.+.+++|++|+|.|+.+.-+.+..+-.....+++.+.....
T Consensus 473 ~~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~ 552 (1238)
T KOG1127|consen 473 NSALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRA 552 (1238)
T ss_pred hHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHH
Confidence 45667788889999999999999999999999889999999999999999999999999999998888888888875554
Q ss_pred hhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026637 83 SSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 125 (235)
Q Consensus 83 ~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~ 125 (235)
.+.- +-+..-.||-|.+++|++.+ +.-.++..+..+++.
T Consensus 553 ~qka---~a~~~k~nW~~rG~yyLea~-n~h~aV~~fQsALR~ 591 (1238)
T KOG1127|consen 553 AQKA---PAFACKENWVQRGPYYLEAH-NLHGAVCEFQSALRT 591 (1238)
T ss_pred hhhc---hHHHHHhhhhhccccccCcc-chhhHHHHHHHHhcC
Confidence 4433 32334446666777777776 677777777666655
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.015 Score=60.06 Aligned_cols=140 Identities=9% Similarity=0.094 Sum_probs=92.9
Q ss_pred hcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhhccCCcch
Q 026637 14 VLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFM 93 (235)
Q Consensus 14 al~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~~a~~~w~~~~~~l 93 (235)
.+-..|++-+++..+|.++..+|++++|.++.+++|.++|+|+.++.++|..+... +.++|+..+.++....-....+-
T Consensus 108 ~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i~~kq~~ 186 (906)
T PRK14720 108 KILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRFIKKKQYV 186 (906)
T ss_pred HHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHhhhcch
Confidence 33345566699999999999999999999999999999999999999999999999 99999999999976643321110
Q ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHhhchhhhcCCCCCchHhHhHHHHHHHHHHhcCcccccccchHHHHHHHH
Q 026637 94 YTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNALGLLLRVYVRGELDVFGNRLKVLADCVA 169 (235)
Q Consensus 94 ~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~~~~~~~~~~~~~~~da~sLL~Rl~l~G~~~~~g~rw~~la~~~~ 169 (235)
..-.+| .-++...- +++|.=+.+..+..... + ..-++|..--||=-.=. +.+|++.-..+.
T Consensus 187 ~~~e~W-~k~~~~~~-~d~d~f~~i~~ki~~~~----~---~~~~~~~~~~l~~~y~~------~~~~~~~i~iLK 247 (906)
T PRK14720 187 GIEEIW-SKLVHYNS-DDFDFFLRIERKVLGHR----E---FTRLVGLLEDLYEPYKA------LEDWDEVIYILK 247 (906)
T ss_pred HHHHHH-HHHHhcCc-ccchHHHHHHHHHHhhh----c---cchhHHHHHHHHHHHhh------hhhhhHHHHHHH
Confidence 111223 44555454 35666555543332221 1 22245555555544332 344555554444
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.015 Score=52.08 Aligned_cols=90 Identities=13% Similarity=0.034 Sum_probs=79.9
Q ss_pred CCChhhHHHHHHhhcCCCCCChh---HHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHHcCCHHH
Q 026637 1 MGRPDLCFDIIHQVLPYNQQEDF---IFGILAFSLLELGQMSDAEEAAKKGLKINKHDC---WSQHALCHVLQHDCCFKE 74 (235)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~---~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~da---wA~halahvl~~~Gr~~e 74 (235)
.||...|.+.+..-+.-+|++.| ++.-+|-++-.+|+|++|...+.+++.-.|+.+ .++.-||.++...|+.++
T Consensus 154 sgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~ 233 (262)
T COG1729 154 SGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDE 233 (262)
T ss_pred cCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHH
Confidence 37888888888888888887664 778888899999999999999999999888875 569999999999999999
Q ss_pred HHHHHHHchhhhccCC
Q 026637 75 AVQFMEECSSTWSSCS 90 (235)
Q Consensus 75 gi~~l~~a~~~w~~~~ 90 (235)
|...+++....+|..+
T Consensus 234 A~atl~qv~k~YP~t~ 249 (262)
T COG1729 234 ACATLQQVIKRYPGTD 249 (262)
T ss_pred HHHHHHHHHHHCCCCH
Confidence 9999999999998854
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.067 Score=46.32 Aligned_cols=115 Identities=19% Similarity=0.083 Sum_probs=65.9
Q ss_pred hhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHh-hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc
Q 026637 4 PDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLK-INKHDCWSQHALCHVLQHDCCFKEAVQFMEEC 82 (235)
Q Consensus 4 ~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~-L~P~dawA~halahvl~~~Gr~~egi~~l~~a 82 (235)
+....+...+.+...|... -..-+|-.+.|.|++.||+..+.+|++ +--+|+..+-.++.+....+++.++...+++-
T Consensus 72 P~R~~Rea~~~~~~ApTvq-nr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l 150 (251)
T COG4700 72 PERHLREATEELAIAPTVQ-NRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDL 150 (251)
T ss_pred hhHHHHHHHHHHhhchhHH-HHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHH
Confidence 3444444555554444322 122345567777777777777777765 56667777777777777777777777777766
Q ss_pred hhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhc
Q 026637 83 SSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHI 123 (235)
Q Consensus 83 ~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i 123 (235)
.+..|...+ ...|.. +|-.+-.+| .++.|...|+..|
T Consensus 151 ~e~~pa~r~-pd~~Ll--~aR~laa~g-~~a~Aesafe~a~ 187 (251)
T COG4700 151 MEYNPAFRS-PDGHLL--FARTLAAQG-KYADAESAFEVAI 187 (251)
T ss_pred hhcCCccCC-CCchHH--HHHHHHhcC-CchhHHHHHHHHH
Confidence 665554221 133443 455554444 6665555554444
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.13 Score=39.38 Aligned_cols=117 Identities=21% Similarity=0.283 Sum_probs=72.5
Q ss_pred hhhHHHHHHhhcCCCCCChhHHHHHHH-HHHHhCCHHHHHHHHHHHHhhCC---CCHHHHHHHHHHHHHcCCHHHHHHHH
Q 026637 4 PDLCFDIIHQVLPYNQQEDFIFGILAF-SLLELGQMSDAEEAAKKGLKINK---HDCWSQHALCHVLQHDCCFKEAVQFM 79 (235)
Q Consensus 4 ~~~al~~~~ral~~~p~~~~~~g~~Af-~L~e~g~~~~Ae~~arrAL~L~P---~dawA~halahvl~~~Gr~~egi~~l 79 (235)
...+.....+++...+........... .+...|++++|.....+++.++| .........+..+...|+.++++..+
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 190 (291)
T COG0457 111 YEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELL 190 (291)
T ss_pred HHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHH
Confidence 345556666666655555444445555 66677777777777777777666 35555666666666777777777777
Q ss_pred HHchhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026637 80 EECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 125 (235)
Q Consensus 80 ~~a~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~ 125 (235)
.+.....+.. . ...+.-++..+...+ +++++...+...+..
T Consensus 191 ~~~~~~~~~~--~--~~~~~~~~~~~~~~~-~~~~a~~~~~~~~~~ 231 (291)
T COG0457 191 EKALKLNPDD--D--AEALLNLGLLYLKLG-KYEEALEYYEKALEL 231 (291)
T ss_pred HHHHhhCccc--c--hHHHHHhhHHHHHcc-cHHHHHHHHHHHHhh
Confidence 7776666552 0 122333666666665 677777777666665
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.011 Score=55.69 Aligned_cols=73 Identities=16% Similarity=0.152 Sum_probs=64.3
Q ss_pred CCChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHH
Q 026637 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFK 73 (235)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~ 73 (235)
++++..++.++.+||...|++.=+++-.|-++.+.|+|+.|+..+++|++++|+|-.+...+.-....--+..
T Consensus 270 l~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~ 342 (397)
T KOG0543|consen 270 LKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYE 342 (397)
T ss_pred hhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHH
Confidence 4678899999999999999999999999999999999999999999999999999877777776655444443
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.075 Score=46.00 Aligned_cols=112 Identities=13% Similarity=0.109 Sum_probs=72.2
Q ss_pred CCChhhHHHHHHhhcC-CCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHcCCHHHHHH
Q 026637 1 MGRPDLCFDIIHQVLP-YNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKH--DCWSQHALCHVLQHDCCFKEAVQ 77 (235)
Q Consensus 1 ~G~~~~al~~~~ral~-~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~--dawA~halahvl~~~Gr~~egi~ 77 (235)
+||..++....++++. ...+|+-++--+|-++-+.+++.+|...-+.-.+-||. .|..+-.++-++..+|+.+++..
T Consensus 102 lGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aes 181 (251)
T COG4700 102 LGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAES 181 (251)
T ss_pred hhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHH
Confidence 3667777777777776 55666666666666777777777777777777776664 36666667777777777777777
Q ss_pred HHHHchhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHH
Q 026637 78 FMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIY 119 (235)
Q Consensus 78 ~l~~a~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~y 119 (235)
-++.+....|.. ..... .+-++..+| +-+++.+-|
T Consensus 182 afe~a~~~ypg~----~ar~~--Y~e~La~qg-r~~ea~aq~ 216 (251)
T COG4700 182 AFEVAISYYPGP----QARIY--YAEMLAKQG-RLREANAQY 216 (251)
T ss_pred HHHHHHHhCCCH----HHHHH--HHHHHHHhc-chhHHHHHH
Confidence 777776666552 23333 455555665 566665544
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.011 Score=56.11 Aligned_cols=119 Identities=17% Similarity=0.084 Sum_probs=93.6
Q ss_pred CChhhHHHHHHhhcCCCCCChhHHHH------------HHHHHHHhCCHHHHHHHHHHHHhhCCCCH----HHHHHHHHH
Q 026637 2 GRPDLCFDIIHQVLPYNQQEDFIFGI------------LAFSLLELGQMSDAEEAAKKGLKINKHDC----WSQHALCHV 65 (235)
Q Consensus 2 G~~~~al~~~~ral~~~p~~~~~~g~------------~Af~L~e~g~~~~Ae~~arrAL~L~P~da----wA~halahv 65 (235)
++.+.+....+++|..+|+..-.-.+ -|--+-.+|.|..|++.+..||.++|++. --+.++|-|
T Consensus 217 ~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v 296 (486)
T KOG0550|consen 217 DNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALV 296 (486)
T ss_pred cchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhh
Confidence 45667777888888888875432221 22333458999999999999999999873 457889999
Q ss_pred HHHcCCHHHHHHHHHHchhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchhh
Q 026637 66 LQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE 126 (235)
Q Consensus 66 l~~~Gr~~egi~~l~~a~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~~ 126 (235)
....||.+|||.-.+.+..+.+..- .-.---|.+|+.++ ++++|++-|.+++...
T Consensus 297 ~~rLgrl~eaisdc~~Al~iD~syi-----kall~ra~c~l~le-~~e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 297 NIRLGRLREAISDCNEALKIDSSYI-----KALLRRANCHLALE-KWEEAVEDYEKAMQLE 351 (486)
T ss_pred hcccCCchhhhhhhhhhhhcCHHHH-----HHHHHHHHHHHHHH-HHHHHHHHHHHHHhhc
Confidence 9999999999999999999986641 22223789999998 9999999999999874
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.014 Score=57.81 Aligned_cols=109 Identities=17% Similarity=0.171 Sum_probs=90.8
Q ss_pred ChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc
Q 026637 3 RPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEEC 82 (235)
Q Consensus 3 ~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~~a 82 (235)
+....+..++++|.-.|+.+.-+.|.|..|--.|+-++|-...|.++..+|.+.--+|.+|-++-...+++|+|..++++
T Consensus 22 QYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nA 101 (700)
T KOG1156|consen 22 QYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNA 101 (700)
T ss_pred HHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 45566778888888899999999999999999999999999999999999999888999999999999999999999998
Q ss_pred hhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHH
Q 026637 83 SSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLE 117 (235)
Q Consensus 83 ~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~ 117 (235)
...-|+ | .-+|--+++.....| +|+-.+.
T Consensus 102 l~~~~d-N----~qilrDlslLQ~QmR-d~~~~~~ 130 (700)
T KOG1156|consen 102 LKIEKD-N----LQILRDLSLLQIQMR-DYEGYLE 130 (700)
T ss_pred HhcCCC-c----HHHHHHHHHHHHHHH-hhhhHHH
Confidence 887766 5 346667888887777 6765544
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.018 Score=53.47 Aligned_cols=116 Identities=11% Similarity=0.060 Sum_probs=98.7
Q ss_pred CChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHH
Q 026637 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHD---CWSQHALCHVLQHDCCFKEAVQF 78 (235)
Q Consensus 2 G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~d---awA~halahvl~~~Gr~~egi~~ 78 (235)
|+++.++....|.|..--.+|....++|......+++|-+...++||++..-++ +..+.+++||....|++.-+-.-
T Consensus 338 ~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rc 417 (478)
T KOG1129|consen 338 NNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRC 417 (478)
T ss_pred CChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHH
Confidence 678889999999999988999999999999999999999999999999987654 57789999999999999999998
Q ss_pred HHHchhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhc
Q 026637 79 MEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHI 123 (235)
Q Consensus 79 l~~a~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i 123 (235)
++=+....++.. ..-| ++|......| ++++|..+|..+-
T Consensus 418 frlaL~~d~~h~---ealn--NLavL~~r~G-~i~~Arsll~~A~ 456 (478)
T KOG1129|consen 418 FRLALTSDAQHG---EALN--NLAVLAARSG-DILGARSLLNAAK 456 (478)
T ss_pred HHHHhccCcchH---HHHH--hHHHHHhhcC-chHHHHHHHHHhh
Confidence 888887776522 2334 4998888887 9999999996643
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.0083 Score=35.80 Aligned_cols=32 Identities=25% Similarity=0.287 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCC
Q 026637 24 IFGILAFSLLELGQMSDAEEAAKKGLKINKHD 55 (235)
Q Consensus 24 ~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~d 55 (235)
++.++|-.+.+.|++++|.+..+++++++|++
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~n 34 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNPDN 34 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 57788899999999999999999999999953
|
... |
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.077 Score=51.12 Aligned_cols=119 Identities=14% Similarity=0.177 Sum_probs=92.8
Q ss_pred CChhhHHHHHHhhcCCCC-CChh----HHHHHHHHH----H--HhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Q 026637 2 GRPDLCFDIIHQVLPYNQ-QEDF----IFGILAFSL----L--ELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDC 70 (235)
Q Consensus 2 G~~~~al~~~~ral~~~p-~~~~----~~g~~Af~L----~--e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~G 70 (235)
||.+..+..+.++..... ..+. .+.++.++. . .....++|+++..+.++.=|+.++-...-|.++..+|
T Consensus 202 gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g 281 (468)
T PF10300_consen 202 GDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALFLFFEGRLERLKG 281 (468)
T ss_pred CcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhc
Confidence 788888999998877432 2221 233333322 2 3447888999999999999999999999999999999
Q ss_pred CHHHHHHHHHHch---hhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026637 71 CFKEAVQFMEECS---STWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 125 (235)
Q Consensus 71 r~~egi~~l~~a~---~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~ 125 (235)
+.++|++.++++. ..|++. ..-..|=++.+++-++ ++++|...|+..+..
T Consensus 282 ~~~~Ai~~~~~a~~~q~~~~Ql----~~l~~~El~w~~~~~~-~w~~A~~~f~~L~~~ 334 (468)
T PF10300_consen 282 NLEEAIESFERAIESQSEWKQL----HHLCYFELAWCHMFQH-DWEEAAEYFLRLLKE 334 (468)
T ss_pred CHHHHHHHHHHhccchhhHHhH----HHHHHHHHHHHHHHHc-hHHHHHHHHHHHHhc
Confidence 9999999999764 567653 2236888999999998 999999999887765
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.29 Score=37.44 Aligned_cols=119 Identities=19% Similarity=0.209 Sum_probs=94.9
Q ss_pred CCChhhHHHHHHhhcCCCC---CChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHH
Q 026637 1 MGRPDLCFDIIHQVLPYNQ---QEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKH-DCWSQHALCHVLQHDCCFKEAV 76 (235)
Q Consensus 1 ~G~~~~al~~~~ral~~~p---~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~-dawA~halahvl~~~Gr~~egi 76 (235)
+|+.+.+....++++...| .........+-.+...+++++|.....+++...|+ +..+...++..+...|.+++++
T Consensus 143 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 222 (291)
T COG0457 143 LGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEAL 222 (291)
T ss_pred cCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHHH
Confidence 4788899999999988666 23344444444567889999999999999999999 7999999999999999999999
Q ss_pred HHHHHchhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026637 77 QFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 125 (235)
Q Consensus 77 ~~l~~a~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~ 125 (235)
..+.......+.. ...+.+.+..+...| .++++...+.+.+..
T Consensus 223 ~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 265 (291)
T COG0457 223 EYYEKALELDPDN-----AEALYNLALLLLELG-RYEEALEALEKALEL 265 (291)
T ss_pred HHHHHHHhhCccc-----HHHHhhHHHHHHHcC-CHHHHHHHHHHHHHh
Confidence 9999998887651 123334555555655 899999999888876
|
|
| >KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.021 Score=50.80 Aligned_cols=86 Identities=17% Similarity=0.192 Sum_probs=79.0
Q ss_pred ChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc
Q 026637 3 RPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEEC 82 (235)
Q Consensus 3 ~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~~a 82 (235)
+...+.+...|++-.+|.-+-.+.+-+..+....+++..++-.+||+++.||..-++..++-++.....+++||..+.++
T Consensus 25 ~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~~Lqra 104 (284)
T KOG4642|consen 25 RYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKVLQRA 104 (284)
T ss_pred hhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHHHHHHH
Confidence 45678889999999999998888899999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcc
Q 026637 83 SSTWSS 88 (235)
Q Consensus 83 ~~~w~~ 88 (235)
...-..
T Consensus 105 ~sl~r~ 110 (284)
T KOG4642|consen 105 YSLLRE 110 (284)
T ss_pred HHHHhc
Confidence 655443
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.041 Score=54.12 Aligned_cols=106 Identities=16% Similarity=0.176 Sum_probs=82.3
Q ss_pred HhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhhccCCcchhHHHHHHHHHHHHhCCCCHH
Q 026637 34 ELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMR 113 (235)
Q Consensus 34 e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~~a~~~w~~~~~~l~~H~~WHlAL~~le~G~~~d 113 (235)
.+|+|++|+..+-+-|...|+|..|.|.--.++...++|++++.+++.....-.. +. +..|.|.|++.++ ..|
T Consensus 24 ~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~-~~-----~~fEKAYc~Yrln-k~D 96 (652)
T KOG2376|consen 24 KNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVI-NS-----FFFEKAYCEYRLN-KLD 96 (652)
T ss_pred cchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhc-ch-----hhHHHHHHHHHcc-cHH
Confidence 4789999999999999999999999999999999999999999887776543322 22 2268999999998 999
Q ss_pred HHHHHHHhhchhhhcCCCCCchHhHhHHHHHHHHHHhcCcc
Q 026637 114 KVLEIYDNHIWKELEKPDAVHPEVYLNALGLLLRVYVRGEL 154 (235)
Q Consensus 114 eAl~~yd~~i~~~~~~~~~~~~~~~~da~sLL~Rl~l~G~~ 154 (235)
+|+..++ -+ ++.+ ..-+.=-+..||||+.....
T Consensus 97 ealk~~~-~~----~~~~---~~ll~L~AQvlYrl~~ydea 129 (652)
T KOG2376|consen 97 EALKTLK-GL----DRLD---DKLLELRAQVLYRLERYDEA 129 (652)
T ss_pred HHHHHHh-cc----cccc---hHHHHHHHHHHHHHhhHHHH
Confidence 9999997 12 1221 21233457889999876553
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.13 Score=45.93 Aligned_cols=123 Identities=9% Similarity=0.035 Sum_probs=96.3
Q ss_pred CChhhHHHHHHhhcCCCCCCh---hHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHH---HHHHHHHHHHH-------
Q 026637 2 GRPDLCFDIIHQVLPYNQQED---FIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCW---SQHALCHVLQH------- 68 (235)
Q Consensus 2 G~~~~al~~~~ral~~~p~~~---~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~daw---A~halahvl~~------- 68 (235)
|+..+|....+++....|..+ .+.-+++++.-..++|++|+..++|=+.+.|+++. +..-.|.+..+
T Consensus 48 gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~~~~r 127 (254)
T COG4105 48 GNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQIDDVTR 127 (254)
T ss_pred CCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccCCcccc
Confidence 788899999998888777665 58899999999999999999999999999999874 33334443332
Q ss_pred -cCCHHHHHHHHHHchhhhccCC-------------cchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchhh
Q 026637 69 -DCCFKEAVQFMEECSSTWSSCS-------------SFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE 126 (235)
Q Consensus 69 -~Gr~~egi~~l~~a~~~w~~~~-------------~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~~ 126 (235)
+....+++.-+...+..+|+.+ ..+..|.. ..|.+|++.| .+..|...+++.+...
T Consensus 128 Dq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em-~IaryY~kr~-~~~AA~nR~~~v~e~y 197 (254)
T COG4105 128 DQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEM-AIARYYLKRG-AYVAAINRFEEVLENY 197 (254)
T ss_pred CHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHH-HHHHHHHHhc-ChHHHHHHHHHHHhcc
Confidence 2345678888888899998843 12344442 5899999998 9999999999988874
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.09 E-value=0.14 Score=49.51 Aligned_cols=137 Identities=18% Similarity=0.243 Sum_probs=90.2
Q ss_pred CCChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 026637 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME 80 (235)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~ 80 (235)
+|+.+++++++-+.-..--++..++..+|-.++-..+-.+|++..-++.++=|+||..+--++..+...|+-..+....-
T Consensus 537 ~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~y 616 (840)
T KOG2003|consen 537 LGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHY 616 (840)
T ss_pred hcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhh
Confidence 47778888888877666667778888888888888888888888888888888888888888888887777665544332
Q ss_pred HchhhhccCCcchhH------------------------------HHHHH--HHHHHHhCCCCHHHHHHHHHhhchhhhc
Q 026637 81 ECSSTWSSCSSFMYT------------------------------HNWWH--VALCYLEGHSPMRKVLEIYDNHIWKELE 128 (235)
Q Consensus 81 ~a~~~w~~~~~~l~~------------------------------H~~WH--lAL~~le~G~~~deAl~~yd~~i~~~~~ 128 (235)
..-+..|. + +.. ..-|. .|-|.-..| +|.+|+++|.. |.+.
T Consensus 617 dsyryfp~-n--ie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsg-nyqka~d~yk~-~hrk-- 689 (840)
T KOG2003|consen 617 DSYRYFPC-N--IETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSG-NYQKAFDLYKD-IHRK-- 689 (840)
T ss_pred hcccccCc-c--hHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcc-cHHHHHHHHHH-HHHh--
Confidence 22222221 1 011 11122 344444555 88888888844 4331
Q ss_pred CCCCCchHhHhHHHHHHHHHHh
Q 026637 129 KPDAVHPEVYLNALGLLLRVYV 150 (235)
Q Consensus 129 ~~~~~~~~~~~da~sLL~Rl~l 150 (235)
++++ +|..-+|-|+.-
T Consensus 690 -----fped-ldclkflvri~~ 705 (840)
T KOG2003|consen 690 -----FPED-LDCLKFLVRIAG 705 (840)
T ss_pred -----Cccc-hHHHHHHHHHhc
Confidence 2333 788888887753
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=95.89 E-value=0.051 Score=46.28 Aligned_cols=82 Identities=15% Similarity=0.128 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH----------HHHHHHHHHchhhhccCCcchhHHHHHHHHHHHHh
Q 026637 38 MSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCF----------KEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLE 107 (235)
Q Consensus 38 ~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~----------~egi~~l~~a~~~w~~~~~~l~~H~~WHlAL~~le 107 (235)
++.|.+.++.....||+|+.+++.=|.++..+.++ ++|+.=+++++...|.. ..-.|.++.+|.+
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~-----hdAlw~lGnA~ts 81 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNK-----HDALWCLGNAYTS 81 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCch-----HHHHHHHHHHHHH
Confidence 67899999999999999999999999999988666 45666677778888763 2456778877755
Q ss_pred CC---CCHHHHHHHHHhhch
Q 026637 108 GH---SPMRKVLEIYDNHIW 124 (235)
Q Consensus 108 ~G---~~~deAl~~yd~~i~ 124 (235)
.| .+..+|-..|+++..
T Consensus 82 ~A~l~~d~~~A~~~F~kA~~ 101 (186)
T PF06552_consen 82 LAFLTPDTAEAEEYFEKATE 101 (186)
T ss_dssp HHHH---HHHHHHHHHHHHH
T ss_pred HHhhcCChHHHHHHHHHHHH
Confidence 43 144455555554443
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=95.85 E-value=0.056 Score=55.31 Aligned_cols=112 Identities=17% Similarity=0.244 Sum_probs=93.2
Q ss_pred CChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 026637 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEE 81 (235)
Q Consensus 2 G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~~ 81 (235)
+++..|+..+.+++...|+-+|+....|.++...|++++|-+.-+.--.+-|+|--.+-++-+|+..+|..++++.++++
T Consensus 23 ~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~ 102 (932)
T KOG2053|consen 23 SQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYER 102 (932)
T ss_pred HHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 57889999999999999999999999999999999999999666666667888999999999999999999999999999
Q ss_pred chhhhccCCcchhHHHHHHHHHHHHhCCCCH----HHHHHHHH
Q 026637 82 CSSTWSSCSSFMYTHNWWHVALCYLEGHSPM----RKVLEIYD 120 (235)
Q Consensus 82 a~~~w~~~~~~l~~H~~WHlAL~~le~G~~~----deAl~~yd 120 (235)
+...+|+. |+.-|+=.+|..-+ .| ..|+++|.
T Consensus 103 ~~~~~P~e------ell~~lFmayvR~~-~yk~qQkaa~~LyK 138 (932)
T KOG2053|consen 103 ANQKYPSE------ELLYHLFMAYVREK-SYKKQQKAALQLYK 138 (932)
T ss_pred HHhhCCcH------HHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 99888762 55444444554433 33 46788885
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.024 Score=53.79 Aligned_cols=88 Identities=17% Similarity=0.208 Sum_probs=81.7
Q ss_pred CChhhHHHHHHhhcCCCCC----ChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 026637 2 GRPDLCFDIIHQVLPYNQQ----EDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQ 77 (235)
Q Consensus 2 G~~~~al~~~~ral~~~p~----~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~ 77 (235)
|+...+-.....+|..+|+ ..-.++..|.+..-.|+.++|+.-+..|+.|+|.-.+|++-.|.++.-.+.++++++
T Consensus 263 G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~ 342 (486)
T KOG0550|consen 263 GNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVE 342 (486)
T ss_pred cchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7778888899999999996 457889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHchhhhccC
Q 026637 78 FMEECSSTWSSC 89 (235)
Q Consensus 78 ~l~~a~~~w~~~ 89 (235)
.++++...-.++
T Consensus 343 d~~~a~q~~~s~ 354 (486)
T KOG0550|consen 343 DYEKAMQLEKDC 354 (486)
T ss_pred HHHHHHhhcccc
Confidence 999998887774
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=95.68 E-value=0.1 Score=50.23 Aligned_cols=113 Identities=12% Similarity=0.142 Sum_probs=89.0
Q ss_pred ChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCH----HHHHHHHHHHHHcCCHHHHHHH
Q 026637 3 RPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDC----WSQHALCHVLQHDCCFKEAVQF 78 (235)
Q Consensus 3 ~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~da----wA~halahvl~~~Gr~~egi~~ 78 (235)
+.+.+...+++....+|+.+.++.+.|-.+.-.|+.++|.+...+|+.....-+ -..+.+++.+..++++++|...
T Consensus 248 ~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~ 327 (468)
T PF10300_consen 248 PLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEY 327 (468)
T ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHH
Confidence 456678888888889999999999999999999999999999999995333322 3456789999999999999999
Q ss_pred HHHchh--hhccCCcchhHHHHHHHHHHHHhCCCCH-------HHHHHHHHhh
Q 026637 79 MEECSS--TWSSCSSFMYTHNWWHVALCYLEGHSPM-------RKVLEIYDNH 122 (235)
Q Consensus 79 l~~a~~--~w~~~~~~l~~H~~WHlAL~~le~G~~~-------deAl~~yd~~ 122 (235)
+..-.. .|++. + ..+ -.|.++++.| +. ++|.+++.+.
T Consensus 328 f~~L~~~s~WSka--~--Y~Y--~~a~c~~~l~-~~~~~~~~~~~a~~l~~~v 373 (468)
T PF10300_consen 328 FLRLLKESKWSKA--F--YAY--LAAACLLMLG-REEEAKEHKKEAEELFRKV 373 (468)
T ss_pred HHHHHhccccHHH--H--HHH--HHHHHHHhhc-cchhhhhhHHHHHHHHHHH
Confidence 988854 56442 2 222 3888999998 77 7777777543
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=95.64 E-value=0.17 Score=49.11 Aligned_cols=131 Identities=16% Similarity=0.172 Sum_probs=88.7
Q ss_pred hhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHh-------hCC----C----------C----HHH
Q 026637 4 PDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLK-------INK----H----------D----CWS 58 (235)
Q Consensus 4 ~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~-------L~P----~----------d----awA 58 (235)
+..-...+.+||..+|+-+.++..+|- ++..-..+|++..+||++ ... . | ..+
T Consensus 184 p~aRIkaA~eALei~pdCAdAYILLAE--EeA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt~~~~y~ 261 (539)
T PF04184_consen 184 PQARIKAAKEALEINPDCADAYILLAE--EEASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDTNVLVYA 261 (539)
T ss_pred HHHHHHHHHHHHHhhhhhhHHHhhccc--ccccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhccccchhhhh
Confidence 445567788999999999888887753 223345555555555554 221 0 1 345
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHchhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchhhhcCCCCCchHhH
Q 026637 59 QHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVY 138 (235)
Q Consensus 59 ~halahvl~~~Gr~~egi~~l~~a~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~~~~~~~~~~~~~~ 138 (235)
--.+|.+.-..|+.+|||+.+++-.+..|..+ .+..|.+ +--++|+.+ +|+++.++..+.=...+ +.+-.+
T Consensus 262 KrRLAmCarklGr~~EAIk~~rdLlke~p~~~-~l~Iren--Lie~LLelq-~Yad~q~lL~kYdDi~l-----pkSAti 332 (539)
T PF04184_consen 262 KRRLAMCARKLGRLREAIKMFRDLLKEFPNLD-NLNIREN--LIEALLELQ-AYADVQALLAKYDDISL-----PKSATI 332 (539)
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHHhhCCccc-hhhHHHH--HHHHHHhcC-CHHHHHHHHHHhccccC-----CchHHH
Confidence 55788999999999999999999998887643 3345654 888999998 99999888766321111 112346
Q ss_pred hHHHHHH
Q 026637 139 LNALGLL 145 (235)
Q Consensus 139 ~da~sLL 145 (235)
+-..+||
T Consensus 333 ~YTaALL 339 (539)
T PF04184_consen 333 CYTAALL 339 (539)
T ss_pred HHHHHHH
Confidence 6666665
|
The molecular function of this protein is uncertain. |
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.63 E-value=0.22 Score=44.78 Aligned_cols=120 Identities=13% Similarity=0.061 Sum_probs=97.7
Q ss_pred CCChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 026637 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME 80 (235)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~ 80 (235)
+|+.++|.+..++.+..+|.+--.+--.=-++.-+|.--+|++..-.=|+.-|+|+.|+|-++.+|...|.|+.|+=-++
T Consensus 99 ~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClE 178 (289)
T KOG3060|consen 99 TGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLE 178 (289)
T ss_pred hhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHH
Confidence 47889999999999999999888877666678889988899999999999999999999999999999999999999999
Q ss_pred HchhhhccCCcchhHHHHHHHHHHHHhCCC--CHHHHHHHHHhhchh
Q 026637 81 ECSSTWSSCSSFMYTHNWWHVALCYLEGHS--PMRKVLEIYDNHIWK 125 (235)
Q Consensus 81 ~a~~~w~~~~~~l~~H~~WHlAL~~le~G~--~~deAl~~yd~~i~~ 125 (235)
+..=..|..| . +|-- +|-.++-.|| +++-+.+.|.+.+--
T Consensus 179 E~ll~~P~n~-l--~f~r--lae~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 179 ELLLIQPFNP-L--YFQR--LAEVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred HHHHcCCCcH-H--HHHH--HHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 9988887733 2 3322 4444433342 356677788777655
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.61 E-value=0.036 Score=57.45 Aligned_cols=92 Identities=13% Similarity=0.095 Sum_probs=62.3
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhhccCCcchhHHHHHHHHHHHHh
Q 026637 28 LAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLE 107 (235)
Q Consensus 28 ~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~~a~~~w~~~~~~l~~H~~WHlAL~~le 107 (235)
.|..+.|.+++-.|..-++-||..+|+|-..+-.+|.+|...||...++..+.++....|..- .+.+ ..|...-.
T Consensus 568 rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~---y~~f--k~A~~ecd 642 (1238)
T KOG1127|consen 568 RGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSK---YGRF--KEAVMECD 642 (1238)
T ss_pred ccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhH---HHHH--HHHHHHHH
Confidence 344455566666677777777777777777777777777777777777777777777765521 2333 25666666
Q ss_pred CCCCHHHHHHHHHhhchh
Q 026637 108 GHSPMRKVLEIYDNHIWK 125 (235)
Q Consensus 108 ~G~~~deAl~~yd~~i~~ 125 (235)
.| .|.+++..+...|..
T Consensus 643 ~G-kYkeald~l~~ii~~ 659 (1238)
T KOG1127|consen 643 NG-KYKEALDALGLIIYA 659 (1238)
T ss_pred hh-hHHHHHHHHHHHHHH
Confidence 66 777777777766665
|
|
| >smart00028 TPR Tetratricopeptide repeats | Back alignment and domain information |
|---|
Probab=95.60 E-value=0.029 Score=30.82 Aligned_cols=32 Identities=25% Similarity=0.348 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCC
Q 026637 24 IFGILAFSLLELGQMSDAEEAAKKGLKINKHD 55 (235)
Q Consensus 24 ~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~d 55 (235)
++..+|..+.+.|++++|+...+++++++|++
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~ 34 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCCCC
Confidence 45677888888888888888888888888864
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. |
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=95.57 E-value=0.17 Score=47.66 Aligned_cols=116 Identities=16% Similarity=0.100 Sum_probs=93.0
Q ss_pred CCChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 026637 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME 80 (235)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~ 80 (235)
.|+.++|...++.+++..-+.- ..-.+ ....-++...=++.+++.+...|++|-.+-++|-.+...+.+.+|-.+++
T Consensus 276 l~~~~~A~~~i~~~Lk~~~D~~-L~~~~--~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~le 352 (400)
T COG3071 276 LGDHDEAQEIIEDALKRQWDPR-LCRLI--PRLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALE 352 (400)
T ss_pred cCChHHHHHHHHHHHHhccChh-HHHHH--hhcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHH
Confidence 4788899999999999633322 22222 33456788888999999999999999999999999999999999999999
Q ss_pred HchhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchhh
Q 026637 81 ECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE 126 (235)
Q Consensus 81 ~a~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~~ 126 (235)
.+.+.-|+.. ..++ +|..+-..| +.++|-..+...+.-.
T Consensus 353 aAl~~~~s~~----~~~~--la~~~~~~g-~~~~A~~~r~e~L~~~ 391 (400)
T COG3071 353 AALKLRPSAS----DYAE--LADALDQLG-EPEEAEQVRREALLLT 391 (400)
T ss_pred HHHhcCCChh----hHHH--HHHHHHHcC-ChHHHHHHHHHHHHHh
Confidence 9988876642 2344 899998998 8999999998888554
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.52 E-value=0.55 Score=42.88 Aligned_cols=115 Identities=14% Similarity=0.022 Sum_probs=82.7
Q ss_pred hHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc---
Q 026637 6 LCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEEC--- 82 (235)
Q Consensus 6 ~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~~a--- 82 (235)
+.+.++.+++|. .-.....-+..+.+.|++.+|......++...|+++.+...++.+|...|+.+++...+..-
T Consensus 121 qlr~~ld~~~~~---~~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~ 197 (304)
T COG3118 121 QLRQFLDKVLPA---EEEEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQ 197 (304)
T ss_pred HHHHHHHHhcCh---HHHHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCccc
Confidence 567778888877 22334456778889999999999999999999999999999999999999998776665541
Q ss_pred ----------------------------hhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchhh
Q 026637 83 ----------------------------SSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE 126 (235)
Q Consensus 83 ----------------------------~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~~ 126 (235)
.+.+..+|.-.. .---+|..+...| ++|+|++.+=..+.+.
T Consensus 198 ~~~~~~~~l~a~i~ll~qaa~~~~~~~l~~~~aadPdd~~--aa~~lA~~~~~~g-~~e~Ale~Ll~~l~~d 266 (304)
T COG3118 198 AQDKAAHGLQAQIELLEQAAATPEIQDLQRRLAADPDDVE--AALALADQLHLVG-RNEAALEHLLALLRRD 266 (304)
T ss_pred chhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCCCHH--HHHHHHHHHHHcC-CHHHHHHHHHHHHHhc
Confidence 112233332211 2223777777777 8888888877766663
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=95.48 E-value=0.036 Score=32.73 Aligned_cols=33 Identities=12% Similarity=0.075 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHchhhhcc
Q 026637 56 CWSQHALCHVLQHDCCFKEAVQFMEECSSTWSS 88 (235)
Q Consensus 56 awA~halahvl~~~Gr~~egi~~l~~a~~~w~~ 88 (235)
|.++..+|.++..+|++++|+..++++....|+
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 346777888888888888888888888777665
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.41 E-value=0.37 Score=43.96 Aligned_cols=85 Identities=16% Similarity=0.073 Sum_probs=72.5
Q ss_pred CChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHH----------------------------------HH
Q 026637 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAA----------------------------------KK 47 (235)
Q Consensus 2 G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~a----------------------------------rr 47 (235)
|+..++...+..++..+|+.+.+..-++-.+.++|+.++|+++. .+
T Consensus 148 e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~~~l~~ 227 (304)
T COG3118 148 EDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEIQDLQR 227 (304)
T ss_pred cchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCHHHHHH
Confidence 67888889999999999999999999999999999997655432 33
Q ss_pred HHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhh
Q 026637 48 GLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTW 86 (235)
Q Consensus 48 AL~L~P~dawA~halahvl~~~Gr~~egi~~l~~a~~~w 86 (235)
.++-||+|..+-+.+|.++...||.++|.+.+-...+..
T Consensus 228 ~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d 266 (304)
T COG3118 228 RLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRD 266 (304)
T ss_pred HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 467799999999999999999999999999988876653
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=95.36 E-value=0.042 Score=51.41 Aligned_cols=88 Identities=13% Similarity=0.029 Sum_probs=83.7
Q ss_pred CChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 026637 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEE 81 (235)
Q Consensus 2 G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~~ 81 (235)
|.++++.++..+.+..+|-++..+.+.|.++.....|..||.-+..|++||....-|+-..+.+-...|..+||-.-.+.
T Consensus 111 gKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~EAKkD~E~ 190 (536)
T KOG4648|consen 111 GKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNNMEAKKDCET 190 (536)
T ss_pred cchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHhHHH
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhccC
Q 026637 82 CSSTWSSC 89 (235)
Q Consensus 82 a~~~w~~~ 89 (235)
..++-|..
T Consensus 191 vL~LEP~~ 198 (536)
T KOG4648|consen 191 VLALEPKN 198 (536)
T ss_pred HHhhCccc
Confidence 99998773
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=95.36 E-value=0.079 Score=47.24 Aligned_cols=122 Identities=14% Similarity=0.139 Sum_probs=87.0
Q ss_pred CChhhHHHHHHhhcCCCC--CC----hhHHHHHHHHHHHh-CCHHHHHHHHHHHHhhCCCCH------HHHHHHHHHHHH
Q 026637 2 GRPDLCFDIIHQVLPYNQ--QE----DFIFGILAFSLLEL-GQMSDAEEAAKKGLKINKHDC------WSQHALCHVLQH 68 (235)
Q Consensus 2 G~~~~al~~~~ral~~~p--~~----~~~~g~~Af~L~e~-g~~~~Ae~~arrAL~L~P~da------wA~halahvl~~ 68 (235)
+++.++....++|+...- ++ ...+..+|-.+++. |++++|.+.+++|+++-..+. ...-.++.++..
T Consensus 88 ~~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~ 167 (282)
T PF14938_consen 88 GDPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYAR 167 (282)
T ss_dssp TTHHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH
T ss_pred hCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHH
Confidence 367788899999988632 22 35777888899998 999999999999999733322 344678999999
Q ss_pred cCCHHHHHHHHHHchhhhccCCcchh--HH-HHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026637 69 DCCFKEAVQFMEECSSTWSSCSSFMY--TH-NWWHVALCYLEGHSPMRKVLEIYDNHIWK 125 (235)
Q Consensus 69 ~Gr~~egi~~l~~a~~~w~~~~~~l~--~H-~~WHlAL~~le~G~~~deAl~~yd~~i~~ 125 (235)
.|++++|+..+++....--..+ .+. .. .+--..+++|..| |+-.|...+++....
T Consensus 168 l~~y~~A~~~~e~~~~~~l~~~-l~~~~~~~~~l~a~l~~L~~~-D~v~A~~~~~~~~~~ 225 (282)
T PF14938_consen 168 LGRYEEAIEIYEEVAKKCLENN-LLKYSAKEYFLKAILCHLAMG-DYVAARKALERYCSQ 225 (282)
T ss_dssp TT-HHHHHHHHHHHHHTCCCHC-TTGHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHGTT
T ss_pred hCCHHHHHHHHHHHHHHhhccc-ccchhHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhh
Confidence 9999999999998866543322 111 11 2334678999998 899999999886644
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=95.34 E-value=0.11 Score=48.90 Aligned_cols=83 Identities=19% Similarity=0.157 Sum_probs=74.1
Q ss_pred CChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 026637 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEE 81 (235)
Q Consensus 2 G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~~ 81 (235)
|+...-...+++.+...|++|..+..+|..+..++.+.+|....+.|++..|.. ....-+||++..+|+++++-...++
T Consensus 308 ~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~-~~~~~la~~~~~~g~~~~A~~~r~e 386 (400)
T COG3071 308 GDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSA-SDYAELADALDQLGEPEEAEQVRRE 386 (400)
T ss_pred CCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCCh-hhHHHHHHHHHHcCChHHHHHHHHH
Confidence 667778888999999999999999999999999999999999999999998854 5778899999999999999988877
Q ss_pred chhh
Q 026637 82 CSST 85 (235)
Q Consensus 82 a~~~ 85 (235)
....
T Consensus 387 ~L~~ 390 (400)
T COG3071 387 ALLL 390 (400)
T ss_pred HHHH
Confidence 7543
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.21 E-value=0.17 Score=41.52 Aligned_cols=85 Identities=15% Similarity=0.076 Sum_probs=78.5
Q ss_pred CChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCC----HHHHHHHHHHHHHcCCHHHHHH
Q 026637 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHD----CWSQHALCHVLQHDCCFKEAVQ 77 (235)
Q Consensus 2 G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~d----awA~halahvl~~~Gr~~egi~ 77 (235)
|+.++++..+.+++..-|..+-++++.|-++--+|+-++|..=..+||+|...- +.++...|.++-.+|+-+.+..
T Consensus 57 g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~dd~AR~ 136 (175)
T KOG4555|consen 57 GDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGNDDAARA 136 (175)
T ss_pred cchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCchHHHHH
Confidence 789999999999999999999999999999999999999999999999987543 5788889999999999999999
Q ss_pred HHHHchhhh
Q 026637 78 FMEECSSTW 86 (235)
Q Consensus 78 ~l~~a~~~w 86 (235)
-++.+.+.-
T Consensus 137 DFe~AA~LG 145 (175)
T KOG4555|consen 137 DFEAAAQLG 145 (175)
T ss_pred hHHHHHHhC
Confidence 999988774
|
|
| >PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B | Back alignment and domain information |
|---|
Probab=95.10 E-value=0.23 Score=37.24 Aligned_cols=78 Identities=17% Similarity=0.096 Sum_probs=53.1
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhhccCCc-chhHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 026637 42 EEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSS-FMYTHNWWHVALCYLEGHSPMRKVLEIYD 120 (235)
Q Consensus 42 e~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~~a~~~w~~~~~-~l~~H~~WHlAL~~le~G~~~deAl~~yd 120 (235)
.+..+++++-||+|..+.+.+|-++...|++++|++-+....+..+.... -.+-.. +.+|-+- | .-+....-|+
T Consensus 8 ~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~l---l~~f~~l-g-~~~plv~~~R 82 (90)
T PF14561_consen 8 IAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRL---LDIFELL-G-PGDPLVSEYR 82 (90)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHH---HHHHHHH---TT-HHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHH---HHHHHHc-C-CCChHHHHHH
Confidence 45678999999999999999999999999999999999998776555322 112223 5556544 4 4456666666
Q ss_pred hhch
Q 026637 121 NHIW 124 (235)
Q Consensus 121 ~~i~ 124 (235)
+.+.
T Consensus 83 RkL~ 86 (90)
T PF14561_consen 83 RKLA 86 (90)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5443
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.02 E-value=0.48 Score=40.96 Aligned_cols=110 Identities=14% Similarity=0.154 Sum_probs=82.7
Q ss_pred HHHHHhhcCCCCCChh---HHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 026637 8 FDIIHQVLPYNQQEDF---IFGILAFSLLELGQMSDAEEAAKKGLKINKHD---CWSQHALCHVLQHDCCFKEAVQFMEE 81 (235)
Q Consensus 8 l~~~~ral~~~p~~~~---~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~d---awA~halahvl~~~Gr~~egi~~l~~ 81 (235)
...+++-...+|...| +.=.+|-...|.|++++|+..-+.++..-.+. +-+--.|+-|+..+|.+++|+..++.
T Consensus 72 ~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t 151 (207)
T COG2976 72 IAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDT 151 (207)
T ss_pred HHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhc
Confidence 3444444445554443 33345568899999999999999999866555 45677899999999999999999987
Q ss_pred c-hhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026637 82 C-SSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 125 (235)
Q Consensus 82 a-~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~ 125 (235)
- .+.|.. +..+. .+..++..| +.++|+..|.+.+..
T Consensus 152 ~~~~~w~~----~~~el---rGDill~kg-~k~~Ar~ay~kAl~~ 188 (207)
T COG2976 152 IKEESWAA----IVAEL---RGDILLAKG-DKQEARAAYEKALES 188 (207)
T ss_pred cccccHHH----HHHHH---hhhHHHHcC-chHHHHHHHHHHHHc
Confidence 6 344533 12344 678888998 899999999998876
|
|
| >PRK10941 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=94.93 E-value=0.14 Score=45.97 Aligned_cols=68 Identities=16% Similarity=0.092 Sum_probs=63.6
Q ss_pred hHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhhccCC
Q 026637 23 FIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCS 90 (235)
Q Consensus 23 ~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~~a~~~w~~~~ 90 (235)
-.+.++=.++.+.+++++|.+..++.|.++|+|+.-+=..|-++...|.+..|+.-++.....-|.+|
T Consensus 182 Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp 249 (269)
T PRK10941 182 KLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDP 249 (269)
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCch
Confidence 36677778999999999999999999999999999999999999999999999999999999888876
|
|
| >PRK10941 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=94.66 E-value=0.15 Score=45.81 Aligned_cols=69 Identities=9% Similarity=0.031 Sum_probs=62.5
Q ss_pred CChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Q 026637 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDC 70 (235)
Q Consensus 2 G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~G 70 (235)
++.+.|+.++++.+...|++||-.-=.|+.+.+.|.+..|..=.+.-++.+|+|+.+.--...+..+..
T Consensus 195 ~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~~l~~ 263 (269)
T PRK10941 195 KQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIHSIEQ 263 (269)
T ss_pred CcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHHHHhh
Confidence 688999999999999999999999999999999999999999999999999999988776666655543
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=94.64 E-value=0.054 Score=34.66 Aligned_cols=35 Identities=11% Similarity=-0.091 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHchhhhccCC
Q 026637 56 CWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCS 90 (235)
Q Consensus 56 awA~halahvl~~~Gr~~egi~~l~~a~~~w~~~~ 90 (235)
|.++..+|.++..+|++++|++.+++.....|+++
T Consensus 1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~ 35 (44)
T PF13428_consen 1 PAAWLALARAYRRLGQPDEAERLLRRALALDPDDP 35 (44)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence 46788999999999999999999999999998854
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=94.64 E-value=0.069 Score=32.82 Aligned_cols=29 Identities=17% Similarity=0.145 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhhC
Q 026637 24 IFGILAFSLLELGQMSDAEEAAKKGLKIN 52 (235)
Q Consensus 24 ~~g~~Af~L~e~g~~~~Ae~~arrAL~L~ 52 (235)
++..+|-++...|+|++|++..+++|++.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~ 29 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALA 29 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 35677778888888888888888865544
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=94.55 E-value=0.43 Score=42.71 Aligned_cols=119 Identities=10% Similarity=-0.040 Sum_probs=59.4
Q ss_pred hhhHHHHHHhhcCCCCCChhHHHHHHHHHHH-hCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc
Q 026637 4 PDLCFDIIHQVLPYNQQEDFIFGILAFSLLE-LGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEEC 82 (235)
Q Consensus 4 ~~~al~~~~ral~~~p~~~~~~g~~Af~L~e-~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~~a 82 (235)
.+.+|..+.+|....+..+.++--.|..-.. .++...|.+++++++..-|++..-+-.-..-+...|+.+.+...++++
T Consensus 17 ~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~ 96 (280)
T PF05843_consen 17 IEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIKLNDINNARALFERA 96 (280)
T ss_dssp HHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence 3456666666664333333333322222112 235555666666666666666666666666666666666666666666
Q ss_pred hhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026637 83 SSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 125 (235)
Q Consensus 83 ~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~ 125 (235)
...-+.... ..-+|=-+.-+-..-| +.+.+..++++...-
T Consensus 97 i~~l~~~~~--~~~iw~~~i~fE~~~G-dl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 97 ISSLPKEKQ--SKKIWKKFIEFESKYG-DLESVRKVEKRAEEL 136 (280)
T ss_dssp CCTSSCHHH--CHHHHHHHHHHHHHHS--HHHHHHHHHHHHHH
T ss_pred HHhcCchhH--HHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHH
Confidence 554322110 1123433444445555 666666666555544
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=94.53 E-value=0.09 Score=31.28 Aligned_cols=33 Identities=9% Similarity=0.019 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHchhhhcc
Q 026637 56 CWSQHALCHVLQHDCCFKEAVQFMEECSSTWSS 88 (235)
Q Consensus 56 awA~halahvl~~~Gr~~egi~~l~~a~~~w~~ 88 (235)
|.++..+|.++..+|++++|+..+++++...|+
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 356777888888888888888888888777654
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.12 E-value=0.2 Score=44.40 Aligned_cols=96 Identities=16% Similarity=0.052 Sum_probs=75.2
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhhccCCcchhHHHHHHHHH
Q 026637 24 IFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVAL 103 (235)
Q Consensus 24 ~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~~a~~~w~~~~~~l~~H~~WHlAL 103 (235)
.|.-.|..+--.|-.+-|.-=+.++|+++|+-|.+..-+|-.+...|+++.+.+.+....+..|..+ ..|.+--+++
T Consensus 67 l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~---Ya~lNRgi~~ 143 (297)
T COG4785 67 LLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYN---YAHLNRGIAL 143 (297)
T ss_pred HHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcch---HHHhccceee
Confidence 4444444444455566677888999999999999999999999999999999999999999998865 5676644555
Q ss_pred HHHhCCCCHHHHHHHHHhhchh
Q 026637 104 CYLEGHSPMRKVLEIYDNHIWK 125 (235)
Q Consensus 104 ~~le~G~~~deAl~~yd~~i~~ 125 (235)
+| . |+|.-|.+=+-+....
T Consensus 144 YY--~-gR~~LAq~d~~~fYQ~ 162 (297)
T COG4785 144 YY--G-GRYKLAQDDLLAFYQD 162 (297)
T ss_pred ee--c-CchHhhHHHHHHHHhc
Confidence 55 3 4999888877666655
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.09 E-value=0.74 Score=41.92 Aligned_cols=118 Identities=19% Similarity=0.227 Sum_probs=87.0
Q ss_pred CChhhHHHHHHhhcCCC-CCChhHHHHHHHHHHHhCCHHHHHHHHHH----HHhhC--CCCHHHHHHHHHHHHHcCCHHH
Q 026637 2 GRPDLCFDIIHQVLPYN-QQEDFIFGILAFSLLELGQMSDAEEAAKK----GLKIN--KHDCWSQHALCHVLQHDCCFKE 74 (235)
Q Consensus 2 G~~~~al~~~~ral~~~-p~~~~~~g~~Af~L~e~g~~~~Ae~~arr----AL~L~--P~dawA~halahvl~~~Gr~~e 74 (235)
|.+.-.++...+++..+ |.+|....-++-+-++-|+...|+..+++ +=.|+ -+..-.+-+.+-++.-+.++.+
T Consensus 191 kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~ 270 (366)
T KOG2796|consen 191 KEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAE 270 (366)
T ss_pred hhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHH
Confidence 34444566677777766 67888888888888899999888888883 22232 2334566778888888889999
Q ss_pred HHHHHHHchhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026637 75 AVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 125 (235)
Q Consensus 75 gi~~l~~a~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~ 125 (235)
+..+.++..+..++.+ ..-| ..||+.+-.| +.-.|++..+..+..
T Consensus 271 a~r~~~~i~~~D~~~~---~a~N--nKALcllYlg-~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 271 AHRFFTEILRMDPRNA---VANN--NKALCLLYLG-KLKDALKQLEAMVQQ 315 (366)
T ss_pred HHHHHhhccccCCCch---hhhc--hHHHHHHHHH-HHHHHHHHHHHHhcc
Confidence 9999888888887754 2334 3888888887 888888888776655
|
|
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=94.05 E-value=0.14 Score=34.83 Aligned_cols=39 Identities=21% Similarity=0.180 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 026637 24 IFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHAL 62 (235)
Q Consensus 24 ~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~hal 62 (235)
.+..+|.+.-..|+|++|....++.|+++|++..|.--.
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~ 41 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLK 41 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHH
Confidence 356789999999999999999999999999998876433
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=93.98 E-value=7.1 Score=38.73 Aligned_cols=179 Identities=18% Similarity=0.122 Sum_probs=112.5
Q ss_pred ChhHHHHHHHHH-HHhCCHHHHHHHHHHHHhhCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHchhhhccCCcch
Q 026637 21 EDFIFGILAFSL-LELGQMSDAEEAAKKGLKINKHDC------WSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFM 93 (235)
Q Consensus 21 ~~~~~g~~Af~L-~e~g~~~~Ae~~arrAL~L~P~da------wA~halahvl~~~Gr~~egi~~l~~a~~~w~~~~~~l 93 (235)
+..+.--+|-+| +|+..+++||....|++.++.++. .+.+-++.++..++... +...+++.+......+
T Consensus 58 ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~--- 133 (608)
T PF10345_consen 58 EARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYG--- 133 (608)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccC---
Confidence 445666666654 589999999999999999986532 34567789999999888 9999999988876633
Q ss_pred hHHHHHHHHHH----HHhCCCCHHHHHHHHHhhchhhhcCCCCCchHhHhHHHHHHHHHHh-cCcccccccchHHHHHHH
Q 026637 94 YTHNWWHVALC----YLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNALGLLLRVYV-RGELDVFGNRLKVLADCV 168 (235)
Q Consensus 94 ~~H~~WHlAL~----~le~G~~~deAl~~yd~~i~~~~~~~~~~~~~~~~da~sLL~Rl~l-~G~~~~~g~rw~~la~~~ 168 (235)
..+..|+.-+. ++..+ ++..|++.++.-+.... ..+ .....+=++-+-.-+.+ .|.. .+..+.+....
T Consensus 134 ~~~w~~~frll~~~l~~~~~-d~~~Al~~L~~~~~~a~-~~~--d~~~~v~~~l~~~~l~l~~~~~---~d~~~~l~~~~ 206 (608)
T PF10345_consen 134 HSAWYYAFRLLKIQLALQHK-DYNAALENLQSIAQLAN-QRG--DPAVFVLASLSEALLHLRRGSP---DDVLELLQRAI 206 (608)
T ss_pred chhHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHHhh-hcC--CHHHHHHHHHHHHHHHhcCCCc---hhHHHHHHHHH
Confidence 12333333322 22345 89999999977666531 122 22222222222222333 2332 34444444432
Q ss_pred Hhhh---------cchhcchhhHHHHHHHhcCCCchHHHHHHHHHHHHhhc
Q 026637 169 ADQA---------NWYLECHLDLLILWALANTGEVSKAEDLLKGLKSRHSK 210 (235)
Q Consensus 169 ~~~~---------~~~~~~F~d~H~~~al~~ag~~~~~~~ll~~~~~~~~~ 210 (235)
.... ......|.-+.-+.+....|+...++..|..++.....
T Consensus 207 ~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~ 257 (608)
T PF10345_consen 207 AQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDE 257 (608)
T ss_pred HHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 2111 12344566677788888999988889989998888754
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.96 E-value=0.023 Score=52.67 Aligned_cols=86 Identities=13% Similarity=0.070 Sum_probs=80.3
Q ss_pred CChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 026637 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEE 81 (235)
Q Consensus 2 G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~~ 81 (235)
|.++.+.+...++++++|....+|.-.+-++.+.+....|++=+..|+++||+.+-.+-..+.+.-.+|.++++...++.
T Consensus 128 G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl~~ 207 (377)
T KOG1308|consen 128 GEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDLAL 207 (377)
T ss_pred cchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHHHH
Confidence 67888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhc
Q 026637 82 CSSTWS 87 (235)
Q Consensus 82 a~~~w~ 87 (235)
+..+.-
T Consensus 208 a~kld~ 213 (377)
T KOG1308|consen 208 ACKLDY 213 (377)
T ss_pred HHhccc
Confidence 866543
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=93.82 E-value=0.14 Score=29.78 Aligned_cols=32 Identities=22% Similarity=0.157 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCC
Q 026637 24 IFGILAFSLLELGQMSDAEEAAKKGLKINKHD 55 (235)
Q Consensus 24 ~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~d 55 (235)
++..+|.++.+.|++++|.+..++.++..|++
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 45556666677777777777777777777663
|
|
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=93.75 E-value=0.096 Score=29.99 Aligned_cols=24 Identities=21% Similarity=0.162 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHH
Q 026637 57 WSQHALCHVLQHDCCFKEAVQFME 80 (235)
Q Consensus 57 wA~halahvl~~~Gr~~egi~~l~ 80 (235)
++...+|.++..+|++++|.+.++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 445555555555555555555443
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT | Back alignment and domain information |
|---|
Probab=93.68 E-value=0.16 Score=40.79 Aligned_cols=62 Identities=16% Similarity=0.193 Sum_probs=44.5
Q ss_pred ChhHHHHHHHHHHHhCCHHHHHHHHHHHHh-------hCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHc
Q 026637 21 EDFIFGILAFSLLELGQMSDAEEAAKKGLK-------INKHDC----WSQHALCHVLQHDCCFKEAVQFMEEC 82 (235)
Q Consensus 21 ~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~-------L~P~da----wA~halahvl~~~Gr~~egi~~l~~a 82 (235)
|.+.|..++-++...|+|+++...+.+||- |+.+.. -++.+.+.+++.+||.+|++..++.+
T Consensus 54 DA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~a 126 (144)
T PF12968_consen 54 DAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMA 126 (144)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHH
Confidence 567888889999999999999999999984 555543 35566666667777777776666554
|
The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D. |
| >COG2912 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.66 E-value=0.19 Score=45.24 Aligned_cols=68 Identities=16% Similarity=0.104 Sum_probs=61.3
Q ss_pred hHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhhccCC
Q 026637 23 FIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCS 90 (235)
Q Consensus 23 ~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~~a~~~w~~~~ 90 (235)
..+.++=-.+.++++++.|...+.+.+.+||+|+.-+-..|++|...|...-++.-++...+.-|+++
T Consensus 182 rll~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~ 249 (269)
T COG2912 182 RLLRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDP 249 (269)
T ss_pred HHHHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCch
Confidence 34555556889999999999999999999999999999999999999999999999999888888765
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=93.45 E-value=2.9 Score=39.45 Aligned_cols=143 Identities=20% Similarity=0.212 Sum_probs=98.6
Q ss_pred CChhhHHHHHHhhcC-CCCCChhHHHHHHHHHHH---------hCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q 026637 2 GRPDLCFDIIHQVLP-YNQQEDFIFGILAFSLLE---------LGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCC 71 (235)
Q Consensus 2 G~~~~al~~~~ral~-~~p~~~~~~g~~Af~L~e---------~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr 71 (235)
|+.++|++.+..++. ..+.++..+|+.|=++-. ...+++|+..+++|.+++| |-|.=-+++..+...|.
T Consensus 196 gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~-~~Y~GIN~AtLL~~~g~ 274 (374)
T PF13281_consen 196 GDREKALQILLPVLESDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEP-DYYSGINAATLLMLAGH 274 (374)
T ss_pred CCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCc-cccchHHHHHHHHHcCC
Confidence 899999999999554 677899999999876543 2358889999999999995 66777788888888887
Q ss_pred HHHHHHHHHHch--------hhhccCCcchhHHHHHHHHHHH---HhCCCCHHHHHHHHHhhchhhhcCCCCCchHhHhH
Q 026637 72 FKEAVQFMEECS--------STWSSCSSFMYTHNWWHVALCY---LEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVYLN 140 (235)
Q Consensus 72 ~~egi~~l~~a~--------~~w~~~~~~l~~H~~WHlAL~~---le~G~~~deAl~~yd~~i~~~~~~~~~~~~~~~~d 140 (235)
..+...-+++.. +.+...+ .-.+|-.|-+. +-.| ++++|.+.+.+.+.. +.+.=.....+.
T Consensus 275 ~~~~~~el~~i~~~l~~llg~kg~~~~----~~dYWd~ATl~Ea~vL~~-d~~ka~~a~e~~~~l---~~~~W~l~St~~ 346 (374)
T PF13281_consen 275 DFETSEELRKIGVKLSSLLGRKGSLEK----MQDYWDVATLLEASVLAG-DYEKAIQAAEKAFKL---KPPAWELESTLE 346 (374)
T ss_pred cccchHHHHHHHHHHHHHHHhhccccc----cccHHHHHHHHHHHHHcC-CHHHHHHHHHHHhhc---CCcchhHHHHHH
Confidence 655543333322 1222212 23677766544 4466 899999999998866 332222334566
Q ss_pred HHHHHHHHHhcCc
Q 026637 141 ALGLLLRVYVRGE 153 (235)
Q Consensus 141 a~sLL~Rl~l~G~ 153 (235)
-.-|+=++.-...
T Consensus 347 ni~Li~~~~~~~~ 359 (374)
T PF13281_consen 347 NIKLIRHFRKRPE 359 (374)
T ss_pred HHHHHHHHhcCCC
Confidence 6777766665444
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.30 E-value=0.23 Score=45.08 Aligned_cols=87 Identities=14% Similarity=0.082 Sum_probs=75.5
Q ss_pred CChhhHHHHHHhhcCCC------CCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHH
Q 026637 2 GRPDLCFDIIHQVLPYN------QQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEA 75 (235)
Q Consensus 2 G~~~~al~~~~ral~~~------p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~eg 75 (235)
||.+.|-..++++-... ...-.++-..+|++.-.++|..|-....+.+..+|.|+.+..+.|.++.+.|+..+|
T Consensus 226 GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DA 305 (366)
T KOG2796|consen 226 GDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDA 305 (366)
T ss_pred ccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHH
Confidence 77777777777554321 234578888999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHchhhhcc
Q 026637 76 VQFMEECSSTWSS 88 (235)
Q Consensus 76 i~~l~~a~~~w~~ 88 (235)
+.-|++..+.-|.
T Consensus 306 iK~~e~~~~~~P~ 318 (366)
T KOG2796|consen 306 LKQLEAMVQQDPR 318 (366)
T ss_pred HHHHHHHhccCCc
Confidence 9999999999887
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=93.23 E-value=0.18 Score=30.81 Aligned_cols=29 Identities=24% Similarity=0.271 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhhC
Q 026637 24 IFGILAFSLLELGQMSDAEEAAKKGLKIN 52 (235)
Q Consensus 24 ~~g~~Af~L~e~g~~~~Ae~~arrAL~L~ 52 (235)
.++.+|..+..+|++++|+...++++++.
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~~~ 32 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALEIR 32 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHHHH
Confidence 45566667777777777777777766653
|
|
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.15 E-value=0.11 Score=46.08 Aligned_cols=61 Identities=20% Similarity=0.107 Sum_probs=54.1
Q ss_pred HHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhhccC
Q 026637 29 AFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSC 89 (235)
Q Consensus 29 Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~~a~~~w~~~ 89 (235)
+..+.+.|+.+.|.++..+||++.|+..-.+..++...+..|+++.+.+-++++.+..|.+
T Consensus 2 a~~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 2 AYMLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred cchhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 3456788899999999999999999999999999999999999999999999999988875
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.74 E-value=1.2 Score=40.34 Aligned_cols=70 Identities=16% Similarity=0.052 Sum_probs=60.0
Q ss_pred CCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhh
Q 026637 16 PYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSST 85 (235)
Q Consensus 16 ~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~~a~~~ 85 (235)
...|.-|..+.=.|.+...+|+|++|+.+-+.||.-.|+||..+.++-..-.++|...+..+-.......
T Consensus 201 ~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~ 270 (299)
T KOG3081|consen 201 EKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQLKL 270 (299)
T ss_pred cccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHh
Confidence 3356667777778889999999999999999999999999999999999999999998887766555444
|
|
| >PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B | Back alignment and domain information |
|---|
Probab=92.71 E-value=0.89 Score=34.04 Aligned_cols=74 Identities=14% Similarity=0.002 Sum_probs=58.5
Q ss_pred HHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHH
Q 026637 7 CFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHD--CWSQHALCHVLQHDCCFKEAVQFME 80 (235)
Q Consensus 7 al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~d--awA~halahvl~~~Gr~~egi~~l~ 80 (235)
-...+++.+..+|+|..+..-+|-.+...|++++|.+..-+.+..+|+. .-+--.+--++...|.-+.-+.-++
T Consensus 7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~R 82 (90)
T PF14561_consen 7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEYR 82 (90)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHHH
T ss_pred cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHHH
Confidence 3566788888999999999999999999999999999999999999877 7788888889988888655444433
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=92.70 E-value=0.89 Score=43.04 Aligned_cols=184 Identities=14% Similarity=0.046 Sum_probs=116.8
Q ss_pred CCChhhHHHHHHhhcCC--CCCCh----hHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCH----------HHHHHHHH
Q 026637 1 MGRPDLCFDIIHQVLPY--NQQED----FIFGILAFSLLELGQMSDAEEAAKKGLKINKHDC----------WSQHALCH 64 (235)
Q Consensus 1 ~G~~~~al~~~~ral~~--~p~~~----~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~da----------wA~halah 64 (235)
||-+++++.++++|+.. +-+|+ .+.--++-......++++|.-..++|++|-.+-. -++.-++.
T Consensus 135 ls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaV 214 (518)
T KOG1941|consen 135 LSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAV 214 (518)
T ss_pred HHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHH
Confidence 35577888888888874 33444 3445555567778899999999999999865432 45667888
Q ss_pred HHHHcCCHHHHHHHHHHchhhhccC-CcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchhhhcCCCCCchHhHhHHHH
Q 026637 65 VLQHDCCFKEAVQFMEECSSTWSSC-SSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNALG 143 (235)
Q Consensus 65 vl~~~Gr~~egi~~l~~a~~~w~~~-~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~~~~~~~~~~~~~~~da~s 143 (235)
.+-++|+..+|.+..+++...--.. +..++..----+|..|-++| +.|.|..-|+.+...-..-.+.+.-...+|.++
T Consensus 215 alR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~g-d~e~af~rYe~Am~~m~~~gdrmgqv~al~g~A 293 (518)
T KOG1941|consen 215 ALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRG-DLERAFRRYEQAMGTMASLGDRMGQVEALDGAA 293 (518)
T ss_pred HHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcc-cHhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 9999999999999999986542211 11222333334888999998 999999999998876422122222222244443
Q ss_pred HHH---HHHhcCcc---cccccchHHHHHHHHhhhcchhcchhhHHHHHHHhc
Q 026637 144 LLL---RVYVRGEL---DVFGNRLKVLADCVADQANWYLECHLDLLILWALAN 190 (235)
Q Consensus 144 LL~---Rl~l~G~~---~~~g~rw~~la~~~~~~~~~~~~~F~d~H~~~al~~ 190 (235)
=-| |++=.|.. ..+-.|..+|+..... .+. -..+|.-++...
T Consensus 294 kc~~~~r~~~k~~~Crale~n~r~levA~~IG~---K~~--vlK~hcrla~iY 341 (518)
T KOG1941|consen 294 KCLETLRLQNKICNCRALEFNTRLLEVASSIGA---KLS--VLKLHCRLASIY 341 (518)
T ss_pred HHHHHHHHhhcccccchhHHHHHHHHHHHHhhh---hHH--HHHHHHHHHHHH
Confidence 332 44444332 1345677777665543 222 346777666654
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=92.69 E-value=2.1 Score=38.32 Aligned_cols=86 Identities=12% Similarity=0.070 Sum_probs=67.7
Q ss_pred HhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHchhhhccCCcchhHHHHHHHHHHHHhCCCCH
Q 026637 34 ELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQH-DCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPM 112 (235)
Q Consensus 34 e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~-~Gr~~egi~~l~~a~~~w~~~~~~l~~H~~WHlAL~~le~G~~~ 112 (235)
.++..++|..++.+|+.-++-....+-+.|..-+. .++.+-|...++......+.. .-+|++...+++..+ +.
T Consensus 13 r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~-----~~~~~~Y~~~l~~~~-d~ 86 (280)
T PF05843_consen 13 RTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSD-----PDFWLEYLDFLIKLN-DI 86 (280)
T ss_dssp HHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT------HHHHHHHHHHHHHTT--H
T ss_pred HhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCC-----HHHHHHHHHHHHHhC-cH
Confidence 33449999999999997666667777777877555 466666999999999999885 367889999999998 89
Q ss_pred HHHHHHHHhhchh
Q 026637 113 RKVLEIYDNHIWK 125 (235)
Q Consensus 113 deAl~~yd~~i~~ 125 (235)
+.|..+|++.|..
T Consensus 87 ~~aR~lfer~i~~ 99 (280)
T PF05843_consen 87 NNARALFERAISS 99 (280)
T ss_dssp HHHHHHHHHHCCT
T ss_pred HHHHHHHHHHHHh
Confidence 9999999998764
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT | Back alignment and domain information |
|---|
Probab=92.55 E-value=3.1 Score=33.61 Aligned_cols=91 Identities=13% Similarity=0.181 Sum_probs=62.4
Q ss_pred HHHhCCHHHHHHHHHHHHhhCCC------------CHHHHHHHHHHHHHcCCHHHHHHHHHHchhhhccCCcch--hHHH
Q 026637 32 LLELGQMSDAEEAAKKGLKINKH------------DCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFM--YTHN 97 (235)
Q Consensus 32 L~e~g~~~~Ae~~arrAL~L~P~------------dawA~halahvl~~~Gr~~egi~~l~~a~~~w~~~~~~l--~~H~ 97 (235)
..+.|.|++|.+.+|+|++.... |+-.+..|+-++-..||++|++.-.+.+.....+-...- .+ -
T Consensus 19 ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeG-k 97 (144)
T PF12968_consen 19 QLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEG-K 97 (144)
T ss_dssp HHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHH-H
T ss_pred HHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccc-h
Confidence 34578999999999999987655 456677788889999999999999888876554422110 01 1
Q ss_pred HH-----HHHHHHHhCCCCHHHHHHHHHhhch
Q 026637 98 WW-----HVALCYLEGHSPMRKVLEIYDNHIW 124 (235)
Q Consensus 98 ~W-----HlAL~~le~G~~~deAl~~yd~~i~ 124 (235)
.| .-|+++-..| +.++|+.-|.....
T Consensus 98 lWIaaVfsra~Al~~~G-r~~eA~~~fr~agE 128 (144)
T PF12968_consen 98 LWIAAVFSRAVALEGLG-RKEEALKEFRMAGE 128 (144)
T ss_dssp HHHHHHHHHHHHHHHTT--HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcC-ChHHHHHHHHHHHH
Confidence 23 3556666787 99999999976543
|
The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D. |
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.54 E-value=5.8 Score=38.03 Aligned_cols=78 Identities=15% Similarity=0.200 Sum_probs=42.5
Q ss_pred CChhhHHHHHHhhcCCCCCChhHHHHHHHHHHH--hCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 026637 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLE--LGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFM 79 (235)
Q Consensus 2 G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e--~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l 79 (235)
|+.+.++.-++--+. ...--.+|..+.-++. .|.++.|...+++|-+..|.-+||.-++-......|+.++++..+
T Consensus 134 G~~~~Ar~kfeAMl~--dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLv 211 (531)
T COG3898 134 GDYEDARKKFEAMLD--DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLV 211 (531)
T ss_pred CchHHHHHHHHHHhc--ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHH
Confidence 445555544443321 1122345555554433 456666666666666666666666666666666666666666655
Q ss_pred HH
Q 026637 80 EE 81 (235)
Q Consensus 80 ~~ 81 (235)
+.
T Consensus 212 d~ 213 (531)
T COG3898 212 DA 213 (531)
T ss_pred HH
Confidence 54
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.43 E-value=3.7 Score=37.25 Aligned_cols=158 Identities=18% Similarity=0.134 Sum_probs=101.0
Q ss_pred CChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC--HHHHHHHH
Q 026637 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCC--FKEAVQFM 79 (235)
Q Consensus 2 G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr--~~egi~~l 79 (235)
|+++++++...+ .+.=.+..+--+++....++|-|+...++...++-+-.-.+-+-++|-.-+|- ..++.-.+
T Consensus 122 ~~~deAl~~~~~-----~~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided~tLtQLA~awv~la~ggek~qdAfyif 196 (299)
T KOG3081|consen 122 GDFDEALKALHL-----GENLEAAALNVQILLKMHRFDLAEKELKKMQQIDEDATLTQLAQAWVKLATGGEKIQDAFYIF 196 (299)
T ss_pred CChHHHHHHHhc-----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 445555555444 12223444445677888899999999999999988877777778888877764 45666666
Q ss_pred HHchhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchhhhcCCCCCchHhHhHHHHHHHHHHhcCccccccc
Q 026637 80 EECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNALGLLLRVYVRGELDVFGN 159 (235)
Q Consensus 80 ~~a~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~~~~~~~~~~~~~~~da~sLL~Rl~l~G~~~~~g~ 159 (235)
++-....+..| ..-| +.|.+++.+| +|+||..+....+... .+ .+..++|-+-+ -.+.|.+.+|.+
T Consensus 197 eE~s~k~~~T~---~lln--G~Av~~l~~~-~~eeAe~lL~eaL~kd--~~---dpetL~Nliv~---a~~~Gkd~~~~~ 262 (299)
T KOG3081|consen 197 EELSEKTPPTP---LLLN--GQAVCHLQLG-RYEEAESLLEEALDKD--AK---DPETLANLIVL---ALHLGKDAEVTE 262 (299)
T ss_pred HHHhcccCCCh---HHHc--cHHHHHHHhc-CHHHHHHHHHHHHhcc--CC---CHHHHHHHHHH---HHHhCCChHHHH
Confidence 66555443323 2233 6999999998 9999999999999874 22 35556664433 235677755555
Q ss_pred chHHHHHHHHhhhcchhcchhhHH
Q 026637 160 RLKVLADCVADQANWYLECHLDLL 183 (235)
Q Consensus 160 rw~~la~~~~~~~~~~~~~F~d~H 183 (235)
|--. .. +...+..+|++=|
T Consensus 263 r~l~--QL---k~~~p~h~~vk~~ 281 (299)
T KOG3081|consen 263 RNLS--QL---KLSHPEHPFVKHL 281 (299)
T ss_pred HHHH--HH---HhcCCcchHHHHH
Confidence 4321 11 2334555566543
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.12 E-value=0.98 Score=41.86 Aligned_cols=117 Identities=15% Similarity=0.024 Sum_probs=83.7
Q ss_pred hhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHH------------------------------HHhhCC
Q 026637 4 PDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKK------------------------------GLKINK 53 (235)
Q Consensus 4 ~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arr------------------------------AL~L~P 53 (235)
+..+-++.++.--..|.+......+|-+|-..+.+..|.++... -++--|
T Consensus 60 f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp 139 (459)
T KOG4340|consen 60 FALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLP 139 (459)
T ss_pred HHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhcc
Confidence 34555666666666676666666666666666666665544322 223345
Q ss_pred --CCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchhh
Q 026637 54 --HDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE 126 (235)
Q Consensus 54 --~dawA~halahvl~~~Gr~~egi~~l~~a~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~~ 126 (235)
+++..+.+.|-+++..|++++++.-+..+..-..-.| . ...++||+|+..| +|+.|++....-|.++
T Consensus 140 ~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqp-l----lAYniALaHy~~~-qyasALk~iSEIieRG 208 (459)
T KOG4340|consen 140 SENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQP-L----LAYNLALAHYSSR-QYASALKHISEIIERG 208 (459)
T ss_pred CCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCc-h----hHHHHHHHHHhhh-hHHHHHHHHHHHHHhh
Confidence 7889999999999999999999999998877643322 2 3345999999998 9999999888777765
|
|
| >KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.91 E-value=0.12 Score=49.82 Aligned_cols=90 Identities=13% Similarity=0.092 Sum_probs=84.5
Q ss_pred CChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 026637 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEE 81 (235)
Q Consensus 2 G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~~ 81 (235)
.+++.+.+...+|+.++|+.+.+.+..|++....+.|..|..=+-+|++++|...-+++..|.+....|++.++...++.
T Consensus 18 ~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~A~~~l~~ 97 (476)
T KOG0376|consen 18 KVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKKALLDLEK 97 (476)
T ss_pred chHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHHHHHHHHH
Confidence 35788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhccCCc
Q 026637 82 CSSTWSSCSS 91 (235)
Q Consensus 82 a~~~w~~~~~ 91 (235)
+...-|+.+.
T Consensus 98 ~~~l~Pnd~~ 107 (476)
T KOG0376|consen 98 VKKLAPNDPD 107 (476)
T ss_pred hhhcCcCcHH
Confidence 9999988763
|
|
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=91.89 E-value=0.24 Score=28.28 Aligned_cols=26 Identities=27% Similarity=0.198 Sum_probs=22.8
Q ss_pred hhHHHHHHHHHHHhCCHHHHHHHHHH
Q 026637 22 DFIFGILAFSLLELGQMSDAEEAAKK 47 (235)
Q Consensus 22 ~~~~g~~Af~L~e~g~~~~Ae~~arr 47 (235)
|.++.++|.++..+|++++|++..++
T Consensus 1 ~~a~~~la~~~~~~G~~~eA~~~l~~ 26 (26)
T PF07721_consen 1 PRARLALARALLAQGDPDEAERLLRR 26 (26)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHhC
Confidence 46788999999999999999998764
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=91.81 E-value=0.69 Score=43.55 Aligned_cols=92 Identities=8% Similarity=-0.035 Sum_probs=74.0
Q ss_pred HHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhhccCCcchhHHHHHHHHHHHHhC
Q 026637 29 AFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEG 108 (235)
Q Consensus 29 Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~~a~~~w~~~~~~l~~H~~WHlAL~~le~ 108 (235)
|.-+-.+|.|+||+..+-+++++.|.++--+.+.+.+|..+.+|.-|..-.+.+..+...+ ..-+---+-+..++
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y-----~KAYSRR~~AR~~L 178 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLY-----VKAYSRRMQARESL 178 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHH-----HHHHHHHHHHHHHH
Confidence 3445568999999999999999999999999999999999999999888888887775442 23333455566677
Q ss_pred CCCHHHHHHHHHhhchhh
Q 026637 109 HSPMRKVLEIYDNHIWKE 126 (235)
Q Consensus 109 G~~~deAl~~yd~~i~~~ 126 (235)
| ...||-+=|+..++.+
T Consensus 179 g-~~~EAKkD~E~vL~LE 195 (536)
T KOG4648|consen 179 G-NNMEAKKDCETVLALE 195 (536)
T ss_pred h-hHHHHHHhHHHHHhhC
Confidence 7 7888888888888763
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=91.48 E-value=1.5 Score=36.63 Aligned_cols=55 Identities=13% Similarity=-0.018 Sum_probs=43.4
Q ss_pred HhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhhcc
Q 026637 34 ELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSS 88 (235)
Q Consensus 34 e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~~a~~~w~~ 88 (235)
..++.+.++.+...--.|.|+.+.....-+..+..+|++.+|+..+++....-|.
T Consensus 22 ~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~ 76 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPG 76 (160)
T ss_pred ccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCC
Confidence 4558888888888878888888888888888888888888888888887655544
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.31 E-value=1.5 Score=39.27 Aligned_cols=104 Identities=11% Similarity=0.079 Sum_probs=79.6
Q ss_pred ChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHchhhhccCCcchhHHH
Q 026637 21 EDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWS---QHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHN 97 (235)
Q Consensus 21 ~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA---~halahvl~~~Gr~~egi~~l~~a~~~w~~~~~~l~~H~ 97 (235)
.+..+..-|......|+|++|...+++.....|.++|+ +-.++-+++..|++++|+..+++.++..|..|+.-..-+
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Y 112 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYY 112 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHH
Confidence 44677778888899999999999999999999999875 566789999999999999999999999999887522222
Q ss_pred HHHHHHHHHhCCC-------CHHHHHHHHHhhchhh
Q 026637 98 WWHVALCYLEGHS-------PMRKVLEIYDNHIWKE 126 (235)
Q Consensus 98 ~WHlAL~~le~G~-------~~deAl~~yd~~i~~~ 126 (235)
=.+|.++..=+ ...+|..-+.+.|.+-
T Consensus 113 --lkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ry 146 (254)
T COG4105 113 --LKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRY 146 (254)
T ss_pred --HHHHHHhccCCccccCHHHHHHHHHHHHHHHHHC
Confidence 25666543110 2345666666777663
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=91.23 E-value=0.54 Score=27.64 Aligned_cols=31 Identities=13% Similarity=0.146 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHchhhhc
Q 026637 57 WSQHALCHVLQHDCCFKEAVQFMEECSSTWS 87 (235)
Q Consensus 57 wA~halahvl~~~Gr~~egi~~l~~a~~~w~ 87 (235)
.+++.+|.++...|++++++..++++....|
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 4567777777777777777777777776655
|
... |
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.19 E-value=0.36 Score=42.96 Aligned_cols=55 Identities=16% Similarity=0.149 Sum_probs=52.4
Q ss_pred CChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCH
Q 026637 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDC 56 (235)
Q Consensus 2 G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~da 56 (235)
||.+.+.....|++..-|+......-+++..+..|+++.|.+..++-|+++|.|-
T Consensus 9 ~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~ 63 (287)
T COG4976 9 GDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDH 63 (287)
T ss_pred CChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccc
Confidence 7889999999999999999999999999999999999999999999999999985
|
|
| >KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=91.11 E-value=0.79 Score=41.00 Aligned_cols=85 Identities=7% Similarity=-0.000 Sum_probs=72.0
Q ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhhccCCcchhHHHHHHHHHHHHhCCCCHHHH
Q 026637 36 GQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKV 115 (235)
Q Consensus 36 g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~~a~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deA 115 (235)
.+|+.|+..+-||+.+||+.+-=..+.+..+....+++-...-.+++....|+ ....|+. ++.+.++.. .|+++
T Consensus 24 k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N---~vk~h~f--lg~~~l~s~-~~~ea 97 (284)
T KOG4642|consen 24 KRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPN---LVKAHYF--LGQWLLQSK-GYDEA 97 (284)
T ss_pred hhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChH---HHHHHHH--HHHHHHhhc-cccHH
Confidence 36899999999999999999988888888888899999999998888888755 4578886 777777776 69999
Q ss_pred HHHHHhhchhh
Q 026637 116 LEIYDNHIWKE 126 (235)
Q Consensus 116 l~~yd~~i~~~ 126 (235)
+..+.++..-.
T Consensus 98 I~~Lqra~sl~ 108 (284)
T KOG4642|consen 98 IKVLQRAYSLL 108 (284)
T ss_pred HHHHHHHHHHH
Confidence 99998885543
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=90.96 E-value=0.51 Score=28.85 Aligned_cols=26 Identities=12% Similarity=0.358 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHch
Q 026637 58 SQHALCHVLQHDCCFKEAVQFMEECS 83 (235)
Q Consensus 58 A~halahvl~~~Gr~~egi~~l~~a~ 83 (235)
++..+|.++..+|++++|+.+++++.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 45677777777777777777777743
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.86 E-value=1.9 Score=37.84 Aligned_cols=91 Identities=12% Similarity=0.053 Sum_probs=71.3
Q ss_pred HHHHHHhCCHHHHHHHHHHHHhhCCCCHH-----HHHHHHHHHHHcCCHHHHHHHHHHchhhhccCCcchhHHHHHHHHH
Q 026637 29 AFSLLELGQMSDAEEAAKKGLKINKHDCW-----SQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVAL 103 (235)
Q Consensus 29 Af~L~e~g~~~~Ae~~arrAL~L~P~daw-----A~halahvl~~~Gr~~egi~~l~~a~~~w~~~~~~l~~H~~WHlAL 103 (235)
|--+-.+|+|.+|..-+.+||++.|--+. -+-+.|-++..++..+.+|.-..+++.+||... ..-. --|-
T Consensus 102 GN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~---kAl~--RRAe 176 (271)
T KOG4234|consen 102 GNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYE---KALE--RRAE 176 (271)
T ss_pred HHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhH---HHHH--HHHH
Confidence 44466799999999999999999998764 455678899999999999999999999998854 1222 2455
Q ss_pred HHHhCCCCHHHHHHHHHhhchh
Q 026637 104 CYLEGHSPMRKVLEIYDNHIWK 125 (235)
Q Consensus 104 ~~le~G~~~deAl~~yd~~i~~ 125 (235)
+|-..- .||+|++=|.+.+..
T Consensus 177 ayek~e-k~eealeDyKki~E~ 197 (271)
T KOG4234|consen 177 AYEKME-KYEEALEDYKKILES 197 (271)
T ss_pred HHHhhh-hHHHHHHHHHHHHHh
Confidence 664553 899999999776544
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=90.79 E-value=0.56 Score=28.48 Aligned_cols=31 Identities=16% Similarity=0.267 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHchhhhc
Q 026637 57 WSQHALCHVLQHDCCFKEAVQFMEECSSTWS 87 (235)
Q Consensus 57 wA~halahvl~~~Gr~~egi~~l~~a~~~w~ 87 (235)
.+++++|.++..+|++++|+.+++++.....
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 33 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEIRE 33 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHHHH
Confidence 3566667777777777777777666655543
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=90.75 E-value=2.5 Score=41.33 Aligned_cols=123 Identities=12% Similarity=0.005 Sum_probs=98.8
Q ss_pred CChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 026637 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEE 81 (235)
Q Consensus 2 G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~~ 81 (235)
++...|+...+|||..+..+.-+.--++-.-+.+....-|..+..||+.+-|.--.-+.-..++-+|.|+..-+...+++
T Consensus 87 ~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqifer 166 (677)
T KOG1915|consen 87 KEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQIFER 166 (677)
T ss_pred HHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 35678999999999987666666656666677788999999999999999999999999999999999999999999999
Q ss_pred chhhhccCC-----------------------cchhHH----HHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026637 82 CSSTWSSCS-----------------------SFMYTH----NWWHVALCYLEGHSPMRKVLEIYDNHIWK 125 (235)
Q Consensus 82 a~~~w~~~~-----------------------~~l~~H----~~WHlAL~~le~G~~~deAl~~yd~~i~~ 125 (235)
|+.--|..+ .|..+| +|--+|-|-...| ...-+...|.++|..
T Consensus 167 W~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g-~~~~aR~VyerAie~ 236 (677)
T KOG1915|consen 167 WMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHG-NVALARSVYERAIEF 236 (677)
T ss_pred HHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcC-cHHHHHHHHHHHHHH
Confidence 976444421 122334 5666777877776 888888888888876
|
|
| >KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.66 E-value=0.44 Score=44.23 Aligned_cols=63 Identities=11% Similarity=0.102 Sum_probs=57.9
Q ss_pred CChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 026637 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCH 64 (235)
Q Consensus 2 G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halah 64 (235)
|+.+.+...++-|+.+.|+++.++--+|-..++.++.-+|-..+-+||.+.|.+..|+.+.+-
T Consensus 130 Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~R 192 (472)
T KOG3824|consen 130 GKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRAR 192 (472)
T ss_pred cchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhc
Confidence 788899999999999999999999999999999999999999999999999999999887664
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=90.44 E-value=0.47 Score=27.46 Aligned_cols=31 Identities=10% Similarity=0.199 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHchhhhcc
Q 026637 58 SQHALCHVLQHDCCFKEAVQFMEECSSTWSS 88 (235)
Q Consensus 58 A~halahvl~~~Gr~~egi~~l~~a~~~w~~ 88 (235)
|+..+|.++...|++++|+..+++.....|+
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 4556666666666666666666666666554
|
|
| >smart00028 TPR Tetratricopeptide repeats | Back alignment and domain information |
|---|
Probab=90.41 E-value=0.5 Score=25.46 Aligned_cols=29 Identities=14% Similarity=0.083 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHchhhh
Q 026637 58 SQHALCHVLQHDCCFKEAVQFMEECSSTW 86 (235)
Q Consensus 58 A~halahvl~~~Gr~~egi~~l~~a~~~w 86 (235)
++..+|.++...|++++++..++++....
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~ 31 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELD 31 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccC
Confidence 44556666666666666666666655544
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. |
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=90.20 E-value=2.6 Score=39.96 Aligned_cols=119 Identities=18% Similarity=0.170 Sum_probs=75.9
Q ss_pred CCChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHH--------------hhCCCCH----------
Q 026637 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGL--------------KINKHDC---------- 56 (235)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL--------------~L~P~da---------- 56 (235)
+|+.++++...+-+...+..++.+--++|...--.|.|.+|+.++.+|- .+|-.--
T Consensus 70 LgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklndEk~~~~fh~~LqD 149 (557)
T KOG3785|consen 70 LGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRILTFHSSLQD 149 (557)
T ss_pred hccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcHHHHHHHHHHHhh
Confidence 4777777777777777655556666667777777788888887776641 1221111
Q ss_pred --HHHHHHHHHHHHcCCHHHHHHHHHHchhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026637 57 --WSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 125 (235)
Q Consensus 57 --wA~halahvl~~~Gr~~egi~~l~~a~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~ 125 (235)
.-.-.+|-|++|+-.+.|||+.+.+.....|..- ...+ .+||+|..+. -||-+-++.+..++.
T Consensus 150 ~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~---alNV--y~ALCyyKlD-Yydvsqevl~vYL~q 214 (557)
T KOG3785|consen 150 TLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYI---ALNV--YMALCYYKLD-YYDVSQEVLKVYLRQ 214 (557)
T ss_pred hHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhh---hhHH--HHHHHHHhcc-hhhhHHHHHHHHHHh
Confidence 1223567777888888888888877777766532 2222 3788887774 666666666655555
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.88 E-value=0.85 Score=46.17 Aligned_cols=110 Identities=13% Similarity=0.141 Sum_probs=86.3
Q ss_pred hCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhhccCCcchhHHHHHHHHHHHHhCCCCHHH
Q 026637 35 LGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRK 114 (235)
Q Consensus 35 ~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~~a~~~w~~~~~~l~~H~~WHlAL~~le~G~~~de 114 (235)
+++|.++-+..++++++||--...+..+|-+....++...++..+..+...-|+ + .--|-+++-.|+-.| +--+
T Consensus 498 ~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd-~----~eaWnNls~ayi~~~-~k~r 571 (777)
T KOG1128|consen 498 NKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPD-N----AEAWNNLSTAYIRLK-KKKR 571 (777)
T ss_pred chhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCC-c----hhhhhhhhHHHHHHh-hhHH
Confidence 689999999999999999999999999999999999999999999999999877 3 223445999999988 8899
Q ss_pred HHHHHHhhchhhhcCCC---------CCchHhHhHHHHHHHHHHhc
Q 026637 115 VLEIYDNHIWKELEKPD---------AVHPEVYLNALGLLLRVYVR 151 (235)
Q Consensus 115 Al~~yd~~i~~~~~~~~---------~~~~~~~~da~sLL~Rl~l~ 151 (235)
|...+.+++.=.- ++. ++.....-||.+..=|+...
T Consensus 572 a~~~l~EAlKcn~-~~w~iWENymlvsvdvge~eda~~A~~rll~~ 616 (777)
T KOG1128|consen 572 AFRKLKEALKCNY-QHWQIWENYMLVSVDVGEFEDAIKAYHRLLDL 616 (777)
T ss_pred HHHHHHHHhhcCC-CCCeeeechhhhhhhcccHHHHHHHHHHHHHh
Confidence 9998888775421 110 01122235788888787654
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=89.75 E-value=2.6 Score=40.64 Aligned_cols=124 Identities=18% Similarity=0.125 Sum_probs=94.3
Q ss_pred CCChhhHHHHHHhhcCCCC---C---ChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCC------CHHHHHHHHHHHHH
Q 026637 1 MGRPDLCFDIIHQVLPYNQ---Q---EDFIFGILAFSLLELGQMSDAEEAAKKGLKINKH------DCWSQHALCHVLQH 68 (235)
Q Consensus 1 ~G~~~~al~~~~ral~~~p---~---~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~------dawA~halahvl~~ 68 (235)
+|+++++...-+.-|.... + .-.+++++|-++.-.|+++-|.+.+++++.|.-. .+..-..++.+|..
T Consensus 208 LGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytl 287 (639)
T KOG1130|consen 208 LGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTL 287 (639)
T ss_pred eccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHH
Confidence 4677777666555555422 2 3368999999999999999999999988765422 35667789999999
Q ss_pred cCCHHHHHHHHHHchh----hhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchhhhc
Q 026637 69 DCCFKEAVQFMEECSS----TWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKELE 128 (235)
Q Consensus 69 ~Gr~~egi~~l~~a~~----~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~~~~ 128 (235)
...++.||.+..+... .....+ ...-.|-++.++-..| ..++|+.....+++..++
T Consensus 288 l~e~~kAI~Yh~rHLaIAqeL~DriG---e~RacwSLgna~~alg-~h~kAl~fae~hl~~s~e 347 (639)
T KOG1130|consen 288 LKEVQKAITYHQRHLAIAQELEDRIG---ELRACWSLGNAFNALG-EHRKALYFAELHLRSSLE 347 (639)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh---hHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHH
Confidence 9999999999888743 333322 3567899999999998 799999999998887654
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=89.55 E-value=2.4 Score=33.35 Aligned_cols=89 Identities=12% Similarity=0.195 Sum_probs=63.4
Q ss_pred HHHHhCCHHHHHHHHHHHHhhCC--------CCHHH--------------HHHHHHHHHHcCCHHHHHHHHHHchhhhcc
Q 026637 31 SLLELGQMSDAEEAAKKGLKINK--------HDCWS--------------QHALCHVLQHDCCFKEAVQFMEECSSTWSS 88 (235)
Q Consensus 31 ~L~e~g~~~~Ae~~arrAL~L~P--------~dawA--------------~halahvl~~~Gr~~egi~~l~~a~~~w~~ 88 (235)
.....|+..++.+..++|+++=. ...|. ...++..+...|++++++..+++.....|-
T Consensus 15 ~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~ 94 (146)
T PF03704_consen 15 AAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRALALDPY 94 (146)
T ss_dssp HHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCC
Confidence 44567788888888888888652 22443 445667788999999999999999999877
Q ss_pred CCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026637 89 CSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 125 (235)
Q Consensus 89 ~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~ 125 (235)
+. ..+=.+-.++...| ++.+|++.|++....
T Consensus 95 ~E-----~~~~~lm~~~~~~g-~~~~A~~~Y~~~~~~ 125 (146)
T PF03704_consen 95 DE-----EAYRLLMRALAAQG-RRAEALRVYERYRRR 125 (146)
T ss_dssp -H-----HHHHHHHHHHHHTT--HHHHHHHHHHHHHH
T ss_pred CH-----HHHHHHHHHHHHCc-CHHHHHHHHHHHHHH
Confidence 43 33334666777888 999999999876554
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=89.37 E-value=4.6 Score=38.32 Aligned_cols=54 Identities=13% Similarity=0.035 Sum_probs=23.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHchhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHH
Q 026637 60 HALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIY 119 (235)
Q Consensus 60 halahvl~~~Gr~~egi~~l~~a~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~y 119 (235)
-.+||+++..|++++|+..++-.... .++| +-.|-.+|-+++-+| .|.+|..+-
T Consensus 61 lWia~C~fhLgdY~~Al~~Y~~~~~~-~~~~----~el~vnLAcc~FyLg-~Y~eA~~~~ 114 (557)
T KOG3785|consen 61 LWIAHCYFHLGDYEEALNVYTFLMNK-DDAP----AELGVNLACCKFYLG-QYIEAKSIA 114 (557)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHhcc-CCCC----cccchhHHHHHHHHH-HHHHHHHHH
Confidence 34455555555555555554444331 1112 223333555554454 455554443
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=89.34 E-value=6.4 Score=32.88 Aligned_cols=98 Identities=11% Similarity=-0.026 Sum_probs=74.7
Q ss_pred ChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc
Q 026637 3 RPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEEC 82 (235)
Q Consensus 3 ~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~~a 82 (235)
+.+.+...+...--+.|..+.+.-.-|..+...|++++|+.+.|...+-.|..+.+-.-++.+++.+|+++
T Consensus 25 ~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~~--------- 95 (160)
T PF09613_consen 25 DPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDPS--------- 95 (160)
T ss_pred ChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCChH---------
Confidence 44455555554444688999999999999999999999999999999999999999999999998887754
Q ss_pred hhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026637 83 SSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 125 (235)
Q Consensus 83 ~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~ 125 (235)
|. . .|.--++.+ .-+.++.+.+.....
T Consensus 96 ---Wr---------~---~A~evle~~-~d~~a~~Lv~~Ll~~ 122 (160)
T PF09613_consen 96 ---WR---------R---YADEVLESG-ADPDARALVRALLAR 122 (160)
T ss_pred ---HH---------H---HHHHHHhcC-CChHHHHHHHHHHHh
Confidence 31 1 344455655 457777777666655
|
|
| >TIGR03504 FimV_Cterm FimV C-terminal domain | Back alignment and domain information |
|---|
Probab=89.26 E-value=1 Score=29.46 Aligned_cols=40 Identities=20% Similarity=0.206 Sum_probs=30.6
Q ss_pred HHHHHHHhCCCCHHHHHHHHHhhchhhhcCCCCCchHhHhHHHHHHHH
Q 026637 100 HVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNALGLLLR 147 (235)
Q Consensus 100 HlAL~~le~G~~~deAl~~yd~~i~~~~~~~~~~~~~~~~da~sLL~R 147 (235)
|+|-.|++.| +++.|.++.+..+... .....-.|-+||=+
T Consensus 4 dLA~ayie~G-d~e~Ar~lL~evl~~~-------~~~q~~eA~~LL~~ 43 (44)
T TIGR03504 4 DLARAYIEMG-DLEGARELLEEVIEEG-------DEAQRQEARALLAQ 43 (44)
T ss_pred HHHHHHHHcC-ChHHHHHHHHHHHHcC-------CHHHHHHHHHHHhc
Confidence 7999999998 9999999999988531 23345667777644
|
This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems. |
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=89.01 E-value=13 Score=38.63 Aligned_cols=87 Identities=14% Similarity=0.099 Sum_probs=68.7
Q ss_pred CChhhHHHHHHhhcCCCCC---------ChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHH-----HHHHHHHHHH
Q 026637 2 GRPDLCFDIIHQVLPYNQQ---------EDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCW-----SQHALCHVLQ 67 (235)
Q Consensus 2 G~~~~al~~~~ral~~~p~---------~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~daw-----A~halahvl~ 67 (235)
.+..++-..+.++....+. ...+....|-+....|+.++|++.+++++..=|.+.+ +.-+++.+..
T Consensus 429 ~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~ 508 (894)
T COG2909 429 HRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAH 508 (894)
T ss_pred cChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHH
Confidence 3555666666666555432 3467788888999999999999999999999998876 4556778899
Q ss_pred HcCCHHHHHHHHHHchhhhcc
Q 026637 68 HDCCFKEAVQFMEECSSTWSS 88 (235)
Q Consensus 68 ~~Gr~~egi~~l~~a~~~w~~ 88 (235)
-+|+.+++...+.++...-..
T Consensus 509 ~~G~~~~Al~~~~~a~~~a~~ 529 (894)
T COG2909 509 IRGELTQALALMQQAEQMARQ 529 (894)
T ss_pred HhchHHHHHHHHHHHHHHHHH
Confidence 999999999999999877433
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=88.54 E-value=6.8 Score=38.47 Aligned_cols=118 Identities=13% Similarity=0.122 Sum_probs=86.2
Q ss_pred ChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc
Q 026637 3 RPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEEC 82 (235)
Q Consensus 3 ~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~~a 82 (235)
+...|+..+..|+-.-|-+-.+.++.-+-+ ..+++|+...++++-|+-.|.|+.++-..|..-...|+.+.+.+.++=+
T Consensus 419 ~l~~ARkiLG~AIG~cPK~KlFk~YIelEl-qL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelA 497 (677)
T KOG1915|consen 419 NLTGARKILGNAIGKCPKDKLFKGYIELEL-QLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELA 497 (677)
T ss_pred ccHHHHHHHHHHhccCCchhHHHHHHHHHH-HHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 345677777777777777777777776654 5678899999999999999999988888888888889999888888877
Q ss_pred hhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026637 83 SSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 125 (235)
Q Consensus 83 ~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~ 125 (235)
...-.-+ |.--+|=-.=.|-++.| .++.|..+|.+.+.+
T Consensus 498 i~qp~ld---mpellwkaYIdFEi~~~-E~ekaR~LYerlL~r 536 (677)
T KOG1915|consen 498 ISQPALD---MPELLWKAYIDFEIEEG-EFEKARALYERLLDR 536 (677)
T ss_pred hcCcccc---cHHHHHHHhhhhhhhcc-hHHHHHHHHHHHHHh
Confidence 6542111 22234422334456677 899999999887776
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=88.00 E-value=9.2 Score=31.70 Aligned_cols=83 Identities=13% Similarity=0.054 Sum_probs=66.0
Q ss_pred hCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhhccCCcchhHHHHHHHHHHHHhCCCCHHH
Q 026637 35 LGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRK 114 (235)
Q Consensus 35 ~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~~a~~~w~~~~~~l~~H~~WHlAL~~le~G~~~de 114 (235)
.++.++++.+-..-=-|.|+.+....--++++...|++.||+..+++-...=+..| .+--. +|.|+..+| |-
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p---~~kAL--~A~CL~al~---Dp 94 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPP---YGKAL--LALCLNAKG---DA 94 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCch---HHHHH--HHHHHHhcC---Ch
Confidence 88999999999988899999999999999999999999999999998877654433 22222 677777776 35
Q ss_pred HHHHHHhhchh
Q 026637 115 VLEIYDNHIWK 125 (235)
Q Consensus 115 Al~~yd~~i~~ 125 (235)
..+.|-..+-.
T Consensus 95 ~Wr~~A~~~le 105 (153)
T TIGR02561 95 EWHVHADEVLA 105 (153)
T ss_pred HHHHHHHHHHH
Confidence 67777666554
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >COG2912 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=87.57 E-value=1.6 Score=39.31 Aligned_cols=66 Identities=14% Similarity=0.108 Sum_probs=60.1
Q ss_pred CChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 026637 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQ 67 (235)
Q Consensus 2 G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~ 67 (235)
++.+.++.+++|.+.++|+++|-.-=-|+++.+.|.+.-|.+-....++..|+++.+---..+...
T Consensus 195 ~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir~~l~~ 260 (269)
T COG2912 195 LQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIRAQLLE 260 (269)
T ss_pred hchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 467889999999999999999999999999999999999999999999999999998776666554
|
|
| >KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=87.14 E-value=9.7 Score=34.68 Aligned_cols=216 Identities=10% Similarity=0.053 Sum_probs=140.2
Q ss_pred ChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhC-CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHH-HHHHHHH
Q 026637 3 RPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELG-QMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFK-EAVQFME 80 (235)
Q Consensus 3 ~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g-~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~-egi~~l~ 80 (235)
+.+.+++..+-++..+|.+.-+....=.+|.+.+ ++.+=.+-..+-++-||.+-..+|-.-.+.++.|++. .-++|.+
T Consensus 58 ~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rELef~~ 137 (318)
T KOG0530|consen 58 KSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRELEFTK 137 (318)
T ss_pred cCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchHHHHH
Confidence 4678899999999999988877777777888877 7777788888999999999999999999999999998 8899999
Q ss_pred HchhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchhhhcCCCCC-----c----hHhHhHHHHH----HHH
Q 026637 81 ECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAV-----H----PEVYLNALGL----LLR 147 (235)
Q Consensus 81 ~a~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~~~~~~~~~-----~----~~~~~da~sL----L~R 147 (235)
........ + .|.|-|--=+...-+ +++.-+...+..|.... ..++. + ....++.+.| -|-
T Consensus 138 ~~l~~DaK-N----YHaWshRqW~~r~F~-~~~~EL~y~~~Lle~Di-~NNSAWN~Ryfvi~~~~~~~~~~~le~El~yt 210 (318)
T KOG0530|consen 138 LMLDDDAK-N----YHAWSHRQWVLRFFK-DYEDELAYADELLEEDI-RNNSAWNQRYFVITNTKGVISKAELERELNYT 210 (318)
T ss_pred HHHhcccc-c----hhhhHHHHHHHHHHh-hHHHHHHHHHHHHHHhh-hccchhheeeEEEEeccCCccHHHHHHHHHHH
Confidence 99887666 4 688878655555666 69998988888776642 21110 0 0111222222 122
Q ss_pred HH---hcCcccccccchHHHHHHHHhhhcchhcchhhHHH----HHHHhcCCCchHHHHHHHHHHHHhhcCchHHHHHHH
Q 026637 148 VY---VRGELDVFGNRLKVLADCVADQANWYLECHLDLLI----LWALANTGEVSKAEDLLKGLKSRHSKMIKKKQELMQ 220 (235)
Q Consensus 148 l~---l~G~~~~~g~rw~~la~~~~~~~~~~~~~F~d~H~----~~al~~ag~~~~~~~ll~~~~~~~~~~~~~~~~~~~ 220 (235)
++ +... -..-|.=|........+ .+.--++-- ++.-...+-+.....|++.+..-+.....+......
T Consensus 211 ~~~I~~vP~---NeSaWnYL~G~l~~d~g--l~s~s~vv~f~~~l~~~~~~~sP~lla~l~d~~~e~~l~~~~~~~~~a~ 285 (318)
T KOG0530|consen 211 KDKILLVPN---NESAWNYLKGLLELDSG--LSSDSKVVSFVENLYLQLPKRSPFLLAFLLDLYAEDALAYKSSAEELAR 285 (318)
T ss_pred HHHHHhCCC---CccHHHHHHHHHHhccC--CcCCchHHHHHHHHhhccCCCChhHHHHHHHHHHHHHhhccccchHHHH
Confidence 22 2222 25678888877764211 111111111 222223444566677777774444332222233666
Q ss_pred HHHHHHHhhh
Q 026637 221 TGVQVSSDIC 230 (235)
Q Consensus 221 ~~~~l~~~~~ 230 (235)
++..|++.+.
T Consensus 286 ~a~~ly~~La 295 (318)
T KOG0530|consen 286 KAVKLYEDLA 295 (318)
T ss_pred HHHHHHHHHh
Confidence 7888887765
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=87.08 E-value=0.51 Score=45.32 Aligned_cols=122 Identities=13% Similarity=0.071 Sum_probs=86.3
Q ss_pred CCChhhHHHHHHhhcCCCC------CChhHHHHHHHHHHHhCC--------------------HHHHHHHHHHHHhhCCC
Q 026637 1 MGRPDLCFDIIHQVLPYNQ------QEDFIFGILAFSLLELGQ--------------------MSDAEEAAKKGLKINKH 54 (235)
Q Consensus 1 ~G~~~~al~~~~ral~~~p------~~~~~~g~~Af~L~e~g~--------------------~~~Ae~~arrAL~L~P~ 54 (235)
+|++++++.+..|-|.+.. ..+.++.++|.++.+.|+ +..|.+.+..-|++-..
T Consensus 108 ~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~~ 187 (639)
T KOG1130|consen 108 KGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSEK 187 (639)
T ss_pred hcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5888999999888887532 356788888888877653 23344455555555444
Q ss_pred CH------HHHHHHHHHHHHcCCHHHHHHHHHHchhhhccCC---cchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026637 55 DC------WSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCS---SFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 125 (235)
Q Consensus 55 da------wA~halahvl~~~Gr~~egi~~l~~a~~~w~~~~---~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~ 125 (235)
.. -+.-+++..++..|+|+.+|.+=+...+.-...+ ..-+.|- +++-+|+.+| +++.|.+.|...+..
T Consensus 188 lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~s--NlgN~hiflg-~fe~A~ehYK~tl~L 264 (639)
T KOG1130|consen 188 LGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHS--NLGNCHIFLG-NFELAIEHYKLTLNL 264 (639)
T ss_pred hhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhc--ccchhhhhhc-ccHhHHHHHHHHHHH
Confidence 33 3566899999999999999999877755433322 1223443 3888999998 999999999876654
|
|
| >PF12862 Apc5: Anaphase-promoting complex subunit 5 | Back alignment and domain information |
|---|
Probab=87.08 E-value=2.4 Score=31.51 Aligned_cols=52 Identities=23% Similarity=0.293 Sum_probs=29.9
Q ss_pred HHhCCHHHHHHHHHHHHhhCCCCH---------HHHHHHHHHHHHcCCHHHHHHHHHHchh
Q 026637 33 LELGQMSDAEEAAKKGLKINKHDC---------WSQHALCHVLQHDCCFKEAVQFMEECSS 84 (235)
Q Consensus 33 ~e~g~~~~Ae~~arrAL~L~P~da---------wA~halahvl~~~Gr~~egi~~l~~a~~ 84 (235)
...|+|.+|.+...+.+....... .+.-+++-++...|++++|+..++++.+
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 357788888777777776554443 3444444555555555555555555433
|
|
| >PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ] | Back alignment and domain information |
|---|
Probab=85.84 E-value=19 Score=33.65 Aligned_cols=96 Identities=19% Similarity=0.107 Sum_probs=68.3
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhhCCC-CHHHHHH-HHHHHHHcCCHHHHHHHHHHchh----hh-ccCCcchhHH
Q 026637 24 IFGILAFSLLELGQMSDAEEAAKKGLKINKH-DCWSQHA-LCHVLQHDCCFKEAVQFMEECSS----TW-SSCSSFMYTH 96 (235)
Q Consensus 24 ~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~-dawA~ha-lahvl~~~Gr~~egi~~l~~a~~----~w-~~~~~~l~~H 96 (235)
++..+.-.+.+.|.+.-|.+.++--++|+|. ||.+.-- +=+.-.+.++++-=+.+.++... .| ...|+| -
T Consensus 105 al~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~---a 181 (360)
T PF04910_consen 105 ALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNF---A 181 (360)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccH---H
Confidence 5566667899999999999999999999999 9876544 44455667777778888887644 22 234555 2
Q ss_pred HHHHHHHHHHhCCCCH---------------HHHHHHHHhhchh
Q 026637 97 NWWHVALCYLEGHSPM---------------RKVLEIYDNHIWK 125 (235)
Q Consensus 97 ~~WHlAL~~le~G~~~---------------deAl~~yd~~i~~ 125 (235)
+. .||+++..+ +. ++|-....++|..
T Consensus 182 ~S--~aLA~~~l~-~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~ 222 (360)
T PF04910_consen 182 FS--IALAYFRLE-KEESSQSSAQSGRSENSESADEALQKAILR 222 (360)
T ss_pred HH--HHHHHHHhc-CccccccccccccccchhHHHHHHHHHHHH
Confidence 33 556665555 44 7788777777765
|
Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions []. |
| >KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=85.64 E-value=3 Score=39.00 Aligned_cols=84 Identities=19% Similarity=0.100 Sum_probs=69.2
Q ss_pred ChhhHHHHHHhhcCCC---CC-ChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 026637 3 RPDLCFDIIHQVLPYN---QQ-EDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQF 78 (235)
Q Consensus 3 ~~~~al~~~~ral~~~---p~-~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~ 78 (235)
++..|..+....|.-. |+ +.-.+.+.|-+....|.|..|+.=+.+|+.++|+..-|+..=|-+++...++++++.|
T Consensus 96 ryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~~eLe~~~~a~nw 175 (390)
T KOG0551|consen 96 RYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKCLLELERFAEAVNW 175 (390)
T ss_pred hHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHHHHHHHHHHHHHH
Confidence 4566777777777753 32 4467788888999999999999999999999999999999999999999999999999
Q ss_pred HHHchhhh
Q 026637 79 MEECSSTW 86 (235)
Q Consensus 79 l~~a~~~w 86 (235)
.++-....
T Consensus 176 ~ee~~~~d 183 (390)
T KOG0551|consen 176 CEEGLQID 183 (390)
T ss_pred Hhhhhhhh
Confidence 88764443
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=85.56 E-value=21 Score=33.39 Aligned_cols=79 Identities=15% Similarity=0.047 Sum_probs=64.0
Q ss_pred CChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 026637 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEE 81 (235)
Q Consensus 2 G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~~ 81 (235)
||..+++..+++.-.. ++.......|-.+-..|+|++|.+-+..|++...-.|-...+++.+++..|+.+.++..+.+
T Consensus 126 ~Dl~g~rsLveQlp~e--n~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy~~~qyasALk~iSE 203 (459)
T KOG4340|consen 126 GDLPGSRSLVEQLPSE--NEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHYSSRQYASALKHISE 203 (459)
T ss_pred ccCcchHHHHHhccCC--CccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHhhhhHHHHHHHHHH
Confidence 4555556555553211 45566777788888999999999999999999999999999999999999999999988766
Q ss_pred c
Q 026637 82 C 82 (235)
Q Consensus 82 a 82 (235)
-
T Consensus 204 I 204 (459)
T KOG4340|consen 204 I 204 (459)
T ss_pred H
Confidence 5
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=83.75 E-value=4.7 Score=41.82 Aligned_cols=88 Identities=16% Similarity=0.081 Sum_probs=72.4
Q ss_pred HHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhhccCCcchhHHHHHHHHHHHHhCCCC
Q 026637 32 LLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSP 111 (235)
Q Consensus 32 L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~~a~~~w~~~~~~l~~H~~WHlAL~~le~G~~ 111 (235)
..+.+++..|.+...+-+.--||...|..--|.++...|+.+|+...++.-...-+++... .-+ +-.+|-++| +
T Consensus 19 ~ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~t--Lq~---l~~~y~d~~-~ 92 (932)
T KOG2053|consen 19 LLDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLT--LQF---LQNVYRDLG-K 92 (932)
T ss_pred HhhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHH--HHH---HHHHHHHHh-h
Confidence 5578899999999999999999999999999999999999999998887765555553211 122 445788887 9
Q ss_pred HHHHHHHHHhhchh
Q 026637 112 MRKVLEIYDNHIWK 125 (235)
Q Consensus 112 ~deAl~~yd~~i~~ 125 (235)
+|+|+..|.+.+..
T Consensus 93 ~d~~~~~Ye~~~~~ 106 (932)
T KOG2053|consen 93 LDEAVHLYERANQK 106 (932)
T ss_pred hhHHHHHHHHHHhh
Confidence 99999999998876
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=83.39 E-value=6.6 Score=32.54 Aligned_cols=95 Identities=12% Similarity=0.076 Sum_probs=71.6
Q ss_pred hhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHch
Q 026637 4 PDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECS 83 (235)
Q Consensus 4 ~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~~a~ 83 (235)
++.+...+...=-+.|+.+.+.-+-+..+...|++++|....|+-.+-.|+.+.+-.-++.++..+|+++
T Consensus 26 ~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~Dp~---------- 95 (153)
T TIGR02561 26 PYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGDAE---------- 95 (153)
T ss_pred HHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCChH----------
Confidence 3333333333333578888888888888999999999999999999999999999999999999888764
Q ss_pred hhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhc
Q 026637 84 STWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHI 123 (235)
Q Consensus 84 ~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i 123 (235)
| |. .|.-.++.| +-.+++.+.+...
T Consensus 96 --W---------r~---~A~~~le~~-~~~~a~~Lv~al~ 120 (153)
T TIGR02561 96 --W---------HV---HADEVLARD-ADADAVALVRALL 120 (153)
T ss_pred --H---------HH---HHHHHHHhC-CCHhHHHHHHHHh
Confidence 4 22 445556766 5688888886544
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=83.29 E-value=8.2 Score=38.82 Aligned_cols=134 Identities=15% Similarity=0.118 Sum_probs=102.4
Q ss_pred HHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHchhhh
Q 026637 9 DIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDC--WSQHALCHVLQHDCCFKEAVQFMEECSSTW 86 (235)
Q Consensus 9 ~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~da--wA~halahvl~~~Gr~~egi~~l~~a~~~w 86 (235)
..+.-.+...|.+|++|.+-+|-+--.|...+|...+++|+-+-|+.. -+.-.+|.++...|+..+|--.+..+...=
T Consensus 200 ~~~~~glq~~~~sw~lH~~as~YWR~~G~~~~A~~Ca~~a~hf~~~h~kdi~lLSlaTiL~RaG~sadA~iILhAA~~dA 279 (886)
T KOG4507|consen 200 HLIHEGLQKNTSSWVLHNMASFYWRIKGEPYQAVECAMRALHFSSRHNKDIALLSLATVLHRAGFSADAAVILHAALDDA 279 (886)
T ss_pred HHHHHhhhcCchhHHHHHHHHHHHHHcCChhhhhHHHHHHhhhCCcccccchhhhHHHHHHHcccccchhheeehhccCC
Confidence 445667888999999999999999999999999999999999888753 467789999999999999988886665553
Q ss_pred ccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchhhhcCCCCCchHhHhHHHHHHHHHHh
Q 026637 87 SSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNALGLLLRVYV 150 (235)
Q Consensus 87 ~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~~~~~~~~~~~~~~~da~sLL~Rl~l 150 (235)
+.. +-|.--++-.+..+| +|-.-+--||.....+ ...-......-++.|-+-||+=
T Consensus 280 ~~~-----t~n~y~l~~i~aml~-~~N~S~~~ydha~k~~--p~f~q~~~q~~~~ISC~~~L~~ 335 (886)
T KOG4507|consen 280 DFF-----TSNYYTLGNIYAMLG-EYNHSVLCYDHALQAR--PGFEQAIKQRKHAISCQQKLEQ 335 (886)
T ss_pred ccc-----cccceeHHHHHHHHh-hhhhhhhhhhhhhccC--cchhHHHHHHHHHHHHHHHHHH
Confidence 322 223334788888887 8999999998766553 2211223445688888888874
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=83.01 E-value=16 Score=35.58 Aligned_cols=72 Identities=14% Similarity=0.053 Sum_probs=55.8
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhh-------hcc------CCcchhHHHHHHHHHHHHhCCCCHHHHHH
Q 026637 51 INKHDCWSQHALCHVLQHDCCFKEAVQFMEECSST-------WSS------CSSFMYTHNWWHVALCYLEGHSPMRKVLE 117 (235)
Q Consensus 51 L~P~dawA~halahvl~~~Gr~~egi~~l~~a~~~-------w~~------~~~~l~~H~~WHlAL~~le~G~~~deAl~ 117 (235)
-.|+.+|-.-..+.+.+.++.+.+++..+..|... |-+ +++|+ +--|.|.++++.| +++|+..
T Consensus 74 ~~~~s~~l~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~---l~~i~a~sLIe~g-~f~EgR~ 149 (549)
T PF07079_consen 74 QFGKSAYLPLFKALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFF---LDEIEAHSLIETG-RFSEGRA 149 (549)
T ss_pred hcCCchHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHH---HHHHHHHHHHhcC-CcchHHH
Confidence 46899999999999999999999999999887544 211 11121 2346899999998 9999999
Q ss_pred HHHhhchhh
Q 026637 118 IYDNHIWKE 126 (235)
Q Consensus 118 ~yd~~i~~~ 126 (235)
+..+.+..-
T Consensus 150 iLn~i~~~l 158 (549)
T PF07079_consen 150 ILNRIIERL 158 (549)
T ss_pred HHHHHHHHH
Confidence 998777654
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=82.81 E-value=14 Score=35.00 Aligned_cols=101 Identities=11% Similarity=0.012 Sum_probs=71.6
Q ss_pred ChhhHHHHHHhhcCC----CCCChhHHHHHHHHHHH---hCCHHHHHHHHHH-HHhhCCCCHHHHHHHHHHHH----H--
Q 026637 3 RPDLCFDIIHQVLPY----NQQEDFIFGILAFSLLE---LGQMSDAEEAAKK-GLKINKHDCWSQHALCHVLQ----H-- 68 (235)
Q Consensus 3 ~~~~al~~~~ral~~----~p~~~~~~g~~Af~L~e---~g~~~~Ae~~arr-AL~L~P~dawA~halahvl~----~-- 68 (235)
+++.|...++..-+. .++.+.+...+||+|-. .|+.++|...... -..-++.++..+--+|-++= .
T Consensus 156 dydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~~~~s~ 235 (374)
T PF13281_consen 156 DYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRIYKDLFLESN 235 (374)
T ss_pred hHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHcC
Confidence 566777777765554 45788899999999999 9999999999999 45567778887777776642 1
Q ss_pred ---cCCHHHHHHHHHHchhhhccCCcchhHHHHHHHHHHHHhCC
Q 026637 69 ---DCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGH 109 (235)
Q Consensus 69 ---~Gr~~egi~~l~~a~~~w~~~~~~l~~H~~WHlAL~~le~G 109 (235)
....++|+.++.+.-+..++ . |..-++|..+.-.|
T Consensus 236 ~~d~~~ldkAi~~Y~kgFe~~~~---~---Y~GIN~AtLL~~~g 273 (374)
T PF13281_consen 236 FTDRESLDKAIEWYRKGFEIEPD---Y---YSGINAATLLMLAG 273 (374)
T ss_pred ccchHHHHHHHHHHHHHHcCCcc---c---cchHHHHHHHHHcC
Confidence 23477888888877666533 2 32223666665656
|
|
| >KOG2300 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=82.80 E-value=26 Score=34.57 Aligned_cols=141 Identities=12% Similarity=0.040 Sum_probs=99.1
Q ss_pred CCChhhHHHHHHhhcCC---CCC-------ChhHHHHHHHHHHHhCCHHHHHHHHHHHHhh-CCCCHHH--HHHHHHHHH
Q 026637 1 MGRPDLCFDIIHQVLPY---NQQ-------EDFIFGILAFSLLELGQMSDAEEAAKKGLKI-NKHDCWS--QHALCHVLQ 67 (235)
Q Consensus 1 ~G~~~~al~~~~ral~~---~p~-------~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L-~P~dawA--~halahvl~ 67 (235)
+||..+++..+..+..- .|. .+..|..+|.--.-.|.|+.||..++.|+.+ +..|-|| .-++|-+|.
T Consensus 336 ~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL 415 (629)
T KOG2300|consen 336 RGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYL 415 (629)
T ss_pred hCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHH
Confidence 47777777776666542 343 5577888888788899999999999999985 5566665 457899999
Q ss_pred HcCCHHHHHHHHHHchhhhcc--CCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchhhhcCCCCCchHhHhHHHHHH
Q 026637 68 HDCCFKEAVQFMEECSSTWSS--CSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNALGLL 145 (235)
Q Consensus 68 ~~Gr~~egi~~l~~a~~~w~~--~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~~~~~~~~~~~~~~~da~sLL 145 (235)
.+|+.++-...++.--+.+.. ++..+..-+..-.|++.+..+ ++.||.....+.+.- ++.+..+. +-++||+
T Consensus 416 ~~~~~ed~y~~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn-~lnEaK~~l~e~Lkm----anaed~~r-L~a~~Lv 489 (629)
T KOG2300|consen 416 RIGDAEDLYKALDLIGPLNTNSLSSQRLEASILYVYGLFAFKQN-DLNEAKRFLRETLKM----ANAEDLNR-LTACSLV 489 (629)
T ss_pred HhccHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHhc-cHHHHHHHHHHHHhh----cchhhHHH-HHHHHHH
Confidence 999999998888877665433 111222334556788888988 999999988777655 23333333 5666765
Q ss_pred HH
Q 026637 146 LR 147 (235)
Q Consensus 146 ~R 147 (235)
.=
T Consensus 490 LL 491 (629)
T KOG2300|consen 490 LL 491 (629)
T ss_pred HH
Confidence 43
|
|
| >PF12862 Apc5: Anaphase-promoting complex subunit 5 | Back alignment and domain information |
|---|
Probab=82.70 E-value=14 Score=27.32 Aligned_cols=60 Identities=8% Similarity=-0.050 Sum_probs=42.8
Q ss_pred HHcCCHHHHHHHHHHchhhhccCCcc----hhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchhhh
Q 026637 67 QHDCCFKEAVQFMEECSSTWSSCSSF----MYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKEL 127 (235)
Q Consensus 67 ~~~Gr~~egi~~l~~a~~~w~~~~~~----l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~~~ 127 (235)
...|++.++++.+.+..+.-....+. ....-.-++|..+...| ++++|+..+++.|....
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G-~~~~A~~~l~eAi~~Ar 72 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFG-HYEEALQALEEAIRLAR 72 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHH
Confidence 46789999988888875443332211 11233456888899998 99999999999998853
|
|
| >KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=82.34 E-value=4.7 Score=40.45 Aligned_cols=89 Identities=16% Similarity=0.146 Sum_probs=80.6
Q ss_pred CChhhHHHHHHhhcCCCCCChh-HHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 026637 2 GRPDLCFDIIHQVLPYNQQEDF-IFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME 80 (235)
Q Consensus 2 G~~~~al~~~~ral~~~p~~~~-~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~ 80 (235)
|++..+..+.++|+-.-|...+ -+-.+|-++...|-.-.|-...-++|.++-..|--+..+|.++....+.+.|+..++
T Consensus 621 gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~~~ 700 (886)
T KOG4507|consen 621 GNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEAFR 700 (886)
T ss_pred CCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHHHH
Confidence 8889999999999999887654 467788888899988899999999999999999999999999999999999999999
Q ss_pred HchhhhccCC
Q 026637 81 ECSSTWSSCS 90 (235)
Q Consensus 81 ~a~~~w~~~~ 90 (235)
+++..-|.|+
T Consensus 701 ~a~~~~~~~~ 710 (886)
T KOG4507|consen 701 QALKLTTKCP 710 (886)
T ss_pred HHHhcCCCCh
Confidence 9999998876
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=81.99 E-value=15 Score=40.32 Aligned_cols=177 Identities=15% Similarity=0.262 Sum_probs=91.4
Q ss_pred hHHHHHHhhcCCCCCChhHH-HHHHHHHHHhCCHHHHHHHHHHHHh-hCCCC----------------------------
Q 026637 6 LCFDIIHQVLPYNQQEDFIF-GILAFSLLELGQMSDAEEAAKKGLK-INKHD---------------------------- 55 (235)
Q Consensus 6 ~al~~~~ral~~~p~~~~~~-g~~Af~L~e~g~~~~Ae~~arrAL~-L~P~d---------------------------- 55 (235)
+.-+-++|.+...|+.+..+ .++||-+ |.++.++|.+.|+|||. +|++-
T Consensus 1442 esaeDferlvrssPNSSi~WI~YMaf~L-elsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVF 1520 (1710)
T KOG1070|consen 1442 ESAEDFERLVRSSPNSSILWIRYMAFHL-ELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVF 1520 (1710)
T ss_pred cCHHHHHHHHhcCCCcchHHHHHHHHHh-hhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHH
Confidence 33444555555566555322 3333433 55666666666666664 44432
Q ss_pred --------HH-HHHHHHHHHHHcCCHHHHHHHHHHchhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchhh
Q 026637 56 --------CW-SQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE 126 (235)
Q Consensus 56 --------aw-A~halahvl~~~Gr~~egi~~l~~a~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~~ 126 (235)
|+ .+-.|+-+|+..+.+++|.+.|+.......+. .-+|--++-++|... +-++|.++..+++.--
T Consensus 1521 eRAcqycd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~-----~~vW~~y~~fLl~~n-e~~aa~~lL~rAL~~l 1594 (1710)
T KOG1070|consen 1521 ERACQYCDAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQT-----RKVWIMYADFLLRQN-EAEAARELLKRALKSL 1594 (1710)
T ss_pred HHHHHhcchHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcch-----hhHHHHHHHHHhccc-HHHHHHHHHHHHHhhc
Confidence 22 23345666677777777777777766665532 234444666666654 5566677766666431
Q ss_pred hcCCCCCchHhHhHHHHHHHHHHhc-Ccccccc-cchHHHHHHHHhhhc-chhcchhhHHHHHHHhcCCCchHHHHHHHH
Q 026637 127 LEKPDAVHPEVYLNALGLLLRVYVR-GELDVFG-NRLKVLADCVADQAN-WYLECHLDLLILWALANTGEVSKAEDLLKG 203 (235)
Q Consensus 127 ~~~~~~~~~~~~~da~sLL~Rl~l~-G~~~~~g-~rw~~la~~~~~~~~-~~~~~F~d~H~~~al~~ag~~~~~~~ll~~ 203 (235)
+-+.=++-.|=.--|++. |-. +.| .-|+.+......|.+ |.. ..|+ =.+.|+.+-++.|.++
T Consensus 1595 -------Pk~eHv~~IskfAqLEFk~GDa-eRGRtlfEgll~ayPKRtDlW~V--Yid~-----eik~~~~~~vR~lfeR 1659 (1710)
T KOG1070|consen 1595 -------PKQEHVEFISKFAQLEFKYGDA-ERGRTLFEGLLSAYPKRTDLWSV--YIDM-----EIKHGDIKYVRDLFER 1659 (1710)
T ss_pred -------chhhhHHHHHHHHHHHhhcCCc-hhhHHHHHHHHhhCccchhHHHH--HHHH-----HHccCCHHHHHHHHHH
Confidence 122335666666667764 432 111 125544433332322 222 2222 2366676777777665
Q ss_pred H
Q 026637 204 L 204 (235)
Q Consensus 204 ~ 204 (235)
+
T Consensus 1660 v 1660 (1710)
T KOG1070|consen 1660 V 1660 (1710)
T ss_pred H
Confidence 4
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=81.85 E-value=15 Score=40.33 Aligned_cols=114 Identities=14% Similarity=0.077 Sum_probs=76.9
Q ss_pred HHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHchh
Q 026637 7 CFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKH--DCWSQHALCHVLQHDCCFKEAVQFMEECSS 84 (235)
Q Consensus 7 al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~--dawA~halahvl~~~Gr~~egi~~l~~a~~ 84 (235)
|-..+++-+.-..+..-++-+++-.|..+++-.+|..+-.|||.--|. ...-.--.|-..+..|+.+.|...++....
T Consensus 1549 A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ 1628 (1710)
T KOG1070|consen 1549 ADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLS 1628 (1710)
T ss_pred HHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHh
Confidence 333344444433445556667777777777777788888888887777 555666667777788888888888888877
Q ss_pred hhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchhh
Q 026637 85 TWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE 126 (235)
Q Consensus 85 ~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~~ 126 (235)
.+|.- .-.|--+...-+..| +.+-+..+|++.|...
T Consensus 1629 ayPKR-----tDlW~VYid~eik~~-~~~~vR~lfeRvi~l~ 1664 (1710)
T KOG1070|consen 1629 AYPKR-----TDLWSVYIDMEIKHG-DIKYVRDLFERVIELK 1664 (1710)
T ss_pred hCccc-----hhHHHHHHHHHHccC-CHHHHHHHHHHHHhcC
Confidence 77662 345544455555565 6778888888877764
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=81.44 E-value=4.3 Score=40.26 Aligned_cols=85 Identities=12% Similarity=0.081 Sum_probs=73.8
Q ss_pred hhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhC---CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 026637 4 PDLCFDIIHQVLPYNQQEDFIFGILAFSLLELG---QMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME 80 (235)
Q Consensus 4 ~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g---~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~ 80 (235)
..+++....+++...|+..+.+.+.|-+++..+ +.--|..=.-.|+++||-.--|+..|+.++.+.++..||+.+..
T Consensus 390 ~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r~~eal~~~~ 469 (758)
T KOG1310|consen 390 VSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTRYLEALSCHW 469 (758)
T ss_pred HHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhhHHHhhhhHH
Confidence 345677778888888999999999999998765 55558888899999999999999999999999999999999988
Q ss_pred Hchhhhcc
Q 026637 81 ECSSTWSS 88 (235)
Q Consensus 81 ~a~~~w~~ 88 (235)
...-..|.
T Consensus 470 alq~~~Pt 477 (758)
T KOG1310|consen 470 ALQMSFPT 477 (758)
T ss_pred HHhhcCch
Confidence 88777765
|
|
| >COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription] | Back alignment and domain information |
|---|
Probab=81.02 E-value=7.2 Score=36.64 Aligned_cols=62 Identities=11% Similarity=0.113 Sum_probs=49.2
Q ss_pred hhHHHHHHhhcCC--CCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 026637 5 DLCFDIIHQVLPY--NQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVL 66 (235)
Q Consensus 5 ~~al~~~~ral~~--~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl 66 (235)
+..+..++....- -.+|..+|+..|-.|...|+.++|.+.++||++|.+|.+...+-..+.-
T Consensus 346 ~agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~aer~~l~~r~~ 409 (415)
T COG4941 346 AAGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNAAERAFLRQRLD 409 (415)
T ss_pred HhHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChHHHHHHHHHHH
Confidence 3455566655554 3567889999999999999999999999999999999998776655443
|
|
| >PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [] | Back alignment and domain information |
|---|
Probab=80.09 E-value=5.7 Score=24.68 Aligned_cols=29 Identities=17% Similarity=0.167 Sum_probs=20.1
Q ss_pred HHHHHHHHhCCHHHHHHH--HHHHHhhCCCC
Q 026637 27 ILAFSLLELGQMSDAEEA--AKKGLKINKHD 55 (235)
Q Consensus 27 ~~Af~L~e~g~~~~Ae~~--arrAL~L~P~d 55 (235)
-+|..+-..|+|++|+.. .+-+..++|.|
T Consensus 6 ~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~n 36 (36)
T PF07720_consen 6 GLAYNFYQKGKYDEAIHFFQYAFLCALDKYN 36 (36)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHHHTTT-
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHhcccC
Confidence 346677788888888888 55777777765
|
; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 235 | |||
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 8e-05 |
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 | Back alignment and structure |
|---|
Score = 42.1 bits (99), Expect = 8e-05
Identities = 11/82 (13%), Positives = 26/82 (31%)
Query: 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQH 60
R ++ Q + I L +L + GQ A A + ++ + +
Sbjct: 70 QQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITA 129
Query: 61 ALCHVLQHDCCFKEAVQFMEEC 82
L + + C ++ +
Sbjct: 130 QLLNWRRRLCDWRALDVLSAQV 151
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 235 | |||
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 99.6 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.59 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.53 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 99.53 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.51 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 99.5 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.5 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 99.46 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.45 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.42 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.41 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.41 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.41 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.39 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.39 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 99.39 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 99.38 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.38 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.38 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.37 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.35 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.34 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.34 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.34 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 99.33 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.33 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.32 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.32 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.31 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 99.31 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.31 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.31 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.31 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 99.3 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.3 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 99.3 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 99.29 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 99.29 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 99.29 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.29 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.28 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.28 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 99.27 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.27 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.27 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 99.27 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 99.26 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.26 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 99.26 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.26 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 99.26 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.25 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.25 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.25 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.25 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 99.25 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 99.25 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 99.25 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.24 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 99.24 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.24 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.24 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.23 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 99.23 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.23 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 99.22 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 99.22 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.22 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.22 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 99.21 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.2 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.2 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.2 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.2 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.19 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 99.19 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 99.19 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.18 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.17 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 99.17 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 99.17 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 99.16 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 99.16 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 99.15 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.15 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 99.14 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 99.13 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 99.13 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.13 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.12 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.12 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 99.11 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 99.11 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 99.11 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 99.1 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.1 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 99.1 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.1 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.1 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 99.09 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 99.09 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.09 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 99.09 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.09 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 99.09 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 99.08 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.08 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.08 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 99.07 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 99.07 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.07 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 99.07 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.06 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.06 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 99.05 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.05 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.05 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 99.04 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 99.04 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.04 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 99.04 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 99.04 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.03 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 99.03 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 99.02 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 99.02 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.02 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 98.99 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.98 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 98.98 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.97 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 98.97 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 98.97 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 98.96 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 98.95 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 98.95 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.94 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.94 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 98.92 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 98.92 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.92 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 98.91 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 98.91 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.89 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.89 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 98.88 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.88 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 98.88 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 98.87 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.86 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.86 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 98.86 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.85 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 98.84 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 98.83 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.83 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 98.82 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.82 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.79 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 98.78 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.78 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 98.77 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.77 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 98.76 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 98.75 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 98.75 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.72 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.71 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 98.67 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.65 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.63 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.63 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 98.63 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.62 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.62 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.62 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 98.6 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 98.59 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 98.55 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.54 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 98.5 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 98.49 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.47 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.46 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 98.41 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 98.4 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 98.36 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 98.34 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 98.32 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.29 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 98.28 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 98.27 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 98.27 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 98.2 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 98.19 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 98.17 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.16 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 98.01 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 97.92 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 97.9 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 97.9 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 97.88 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 97.76 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 97.74 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 97.7 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 97.63 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 97.58 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 97.58 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 97.55 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 97.52 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.49 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 97.42 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 97.35 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 97.24 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 97.23 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 97.15 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 97.1 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 96.46 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 96.32 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 96.23 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 96.2 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 95.95 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 95.45 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 95.15 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 94.84 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 93.56 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 92.14 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 89.82 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 88.9 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 88.73 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 88.13 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 87.53 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 87.51 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 86.79 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 85.43 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 84.6 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 82.63 |
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=99.60 E-value=1e-14 Score=117.32 Aligned_cols=111 Identities=13% Similarity=0.040 Sum_probs=103.2
Q ss_pred HHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhhccC
Q 026637 10 IIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSC 89 (235)
Q Consensus 10 ~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~~a~~~w~~~ 89 (235)
.+.+++..+|+++.++..+|..+.+.|+|++|++.++++++++|+++.++..+|.++..+|++++|+..++++....|..
T Consensus 24 ~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~ 103 (151)
T 3gyz_A 24 TLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKND 103 (151)
T ss_dssp CTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSC
T ss_pred CHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCC
Confidence 45678889999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred CcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchhh
Q 026637 90 SSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE 126 (235)
Q Consensus 90 ~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~~ 126 (235)
+ ..+.++|.+++..| ++++|+..|++.+...
T Consensus 104 ~-----~~~~~lg~~~~~lg-~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 104 Y-----TPVFHTGQCQLRLK-APLKAKECFELVIQHS 134 (151)
T ss_dssp C-----HHHHHHHHHHHHTT-CHHHHHHHHHHHHHHC
T ss_pred c-----HHHHHHHHHHHHcC-CHHHHHHHHHHHHHhC
Confidence 5 34446999999998 9999999999999873
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.59 E-value=1.3e-13 Score=114.59 Aligned_cols=181 Identities=19% Similarity=0.156 Sum_probs=127.9
Q ss_pred CCChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc-----------
Q 026637 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHD----------- 69 (235)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~----------- 69 (235)
.|+.++++..+++++..+|+++.++..+|.++...|++++|+..++++++++|+++.++..+|.++..+
T Consensus 18 ~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~ 97 (217)
T 2pl2_A 18 LGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGK 97 (217)
T ss_dssp TTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTCSSHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhcccc
Confidence 489999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHchhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchhhhcCCCCCchHhHhHHHHHHHHHH
Q 026637 70 CCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNALGLLLRVY 149 (235)
Q Consensus 70 Gr~~egi~~l~~a~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~~~~~~~~~~~~~~~da~sLL~Rl~ 149 (235)
|++++|+..++++....|+.+ -.+..+|.++...| ++++|++.|++.+... + .+....+-+.++..+
T Consensus 98 g~~~~A~~~~~~al~~~P~~~-----~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~---~---~~~~~~~la~~~~~~- 164 (217)
T 2pl2_A 98 GYLEQALSVLKDAERVNPRYA-----PLHLQRGLVYALLG-ERDKAEASLKQALALE---D---TPEIRSALAELYLSM- 164 (217)
T ss_dssp HHHHHHHHHHHHHHHHCTTCH-----HHHHHHHHHHHHTT-CHHHHHHHHHHHHHHC---C---CHHHHHHHHHHHHHH-
T ss_pred cCHHHHHHHHHHHHHhCcccH-----HHHHHHHHHHHHcC-ChHHHHHHHHHHHhcc---c---chHHHHHHHHHHHHc-
Confidence 999999999999999988743 23445999999998 9999999999999873 1 232233333332221
Q ss_pred hcCcccccccchHHHHHHHHhhhcchhcchhhHHH--HHHHhcCCCchHHHHHHHHH
Q 026637 150 VRGELDVFGNRLKVLADCVADQANWYLECHLDLLI--LWALANTGEVSKAEDLLKGL 204 (235)
Q Consensus 150 l~G~~~~~g~rw~~la~~~~~~~~~~~~~F~d~H~--~~al~~ag~~~~~~~ll~~~ 204 (235)
|- ..+=...+-..+...++ +.+++. ..++...|+.+.+.+.++..
T Consensus 165 --g~---~~~A~~~~~~al~~~P~-----~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 165 --GR---LDEALAQYAKALEQAPK-----DLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp --TC---HHHHHHHHHHHHHHSTT-----CHHHHHHHHHHHTC--------------
T ss_pred --CC---HHHHHHHHHHHHHhCCC-----ChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 22 12223333333332222 224444 45566777777776655544
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.53 E-value=1e-13 Score=115.35 Aligned_cols=118 Identities=12% Similarity=0.019 Sum_probs=110.3
Q ss_pred CCChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHh-----------CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q 026637 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLEL-----------GQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHD 69 (235)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~-----------g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~ 69 (235)
.|+.++++..+++++..+|+++.++..+|.++... |++++|+..+++|++++|+++.++..+|.++..+
T Consensus 52 ~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~ 131 (217)
T 2pl2_A 52 LGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALL 131 (217)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHc
Confidence 58999999999999999999999999999999999 9999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHchhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026637 70 CCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 125 (235)
Q Consensus 70 Gr~~egi~~l~~a~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~ 125 (235)
|++++|+..++++.... ..+ -.+.++|.++...| ++++|++.|++.+..
T Consensus 132 g~~~~A~~~~~~al~~~-~~~-----~~~~~la~~~~~~g-~~~~A~~~~~~al~~ 180 (217)
T 2pl2_A 132 GERDKAEASLKQALALE-DTP-----EIRSALAELYLSMG-RLDEALAQYAKALEQ 180 (217)
T ss_dssp TCHHHHHHHHHHHHHHC-CCH-----HHHHHHHHHHHHHT-CHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHhcc-cch-----HHHHHHHHHHHHcC-CHHHHHHHHHHHHHh
Confidence 99999999999999887 422 34556999999998 999999999999886
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=1.3e-13 Score=108.95 Aligned_cols=112 Identities=13% Similarity=-0.042 Sum_probs=104.0
Q ss_pred HHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhhcc
Q 026637 9 DIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSS 88 (235)
Q Consensus 9 ~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~~a~~~w~~ 88 (235)
..+++++..+|++...+..+|..+...|+|++|+..++++++++|+++.++..+|.++..+|++++|+..++++....|.
T Consensus 8 ~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~ 87 (148)
T 2vgx_A 8 GTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIX 87 (148)
T ss_dssp CSHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred hhHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchhh
Q 026637 89 CSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE 126 (235)
Q Consensus 89 ~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~~ 126 (235)
.+ ..+.++|.+++..| ++++|++.|++.+...
T Consensus 88 ~~-----~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~ 119 (148)
T 2vgx_A 88 EP-----RFPFHAAECLLQXG-ELAEAESGLFLAQELI 119 (148)
T ss_dssp CT-----HHHHHHHHHHHHTT-CHHHHHHHHHHHHHHH
T ss_pred Cc-----hHHHHHHHHHHHcC-CHHHHHHHHHHHHHHC
Confidence 54 34456999999998 9999999999998873
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=4.4e-14 Score=111.58 Aligned_cols=118 Identities=8% Similarity=-0.045 Sum_probs=107.1
Q ss_pred CChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 026637 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEE 81 (235)
Q Consensus 2 G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~~ 81 (235)
|+.++++..++++++..|+++..+..+|..+.+.|+|++|++.++++++++|+++.++..+|.++..+|++++|+..+++
T Consensus 11 ~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~ 90 (150)
T 4ga2_A 11 ADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDKAVECYRR 90 (150)
T ss_dssp HHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHHHHHHHHH
Confidence 67889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHH-HHhhchh
Q 026637 82 CSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEI-YDNHIWK 125 (235)
Q Consensus 82 a~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~-yd~~i~~ 125 (235)
+....|..+ ..+..+|.+++..| +++++.+. +++.+..
T Consensus 91 al~~~p~~~-----~~~~~la~~~~~~~-~~~~aa~~~~~~al~l 129 (150)
T 4ga2_A 91 SVELNPTQK-----DLVLKIAELLCKND-VTDGRAKYWVERAAKL 129 (150)
T ss_dssp HHHHCTTCH-----HHHHHHHHHHHHHC-SSSSHHHHHHHHHHHH
T ss_pred HHHhCCCCH-----HHHHHHHHHHHHcC-ChHHHHHHHHHHHHHh
Confidence 999998753 33445999999998 88887766 4888876
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=99.50 E-value=4.1e-13 Score=104.15 Aligned_cols=112 Identities=13% Similarity=0.003 Sum_probs=101.1
Q ss_pred HHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhhcc
Q 026637 9 DIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSS 88 (235)
Q Consensus 9 ~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~~a~~~w~~ 88 (235)
..+++++..+|++...+..+|..+...|++++|+..+++++.++|+++.++..+|.++..+|++++|+..++++....|.
T Consensus 5 ~~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 84 (142)
T 2xcb_A 5 GTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN 84 (142)
T ss_dssp ----CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred hhHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchhh
Q 026637 89 CSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE 126 (235)
Q Consensus 89 ~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~~ 126 (235)
.+ ..+.++|.+++..| ++++|++.|++.+...
T Consensus 85 ~~-----~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~ 116 (142)
T 2xcb_A 85 EP-----RFPFHAAECHLQLG-DLDGAESGFYSARALA 116 (142)
T ss_dssp CT-----HHHHHHHHHHHHTT-CHHHHHHHHHHHHHHH
T ss_pred Cc-----HHHHHHHHHHHHcC-CHHHHHHHHHHHHHhC
Confidence 54 34557999999998 9999999999998763
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=3.1e-13 Score=133.59 Aligned_cols=119 Identities=13% Similarity=0.089 Sum_probs=112.2
Q ss_pred CCChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 026637 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME 80 (235)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~ 80 (235)
+|+.++|+...+|++..+|+++.++..+|.++.+.|++++|++.+++||+++|+++.++.++|.++..+|++++|+..++
T Consensus 22 ~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~l~~~g~~~~A~~~~~ 101 (723)
T 4gyw_A 22 QGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYT 101 (723)
T ss_dssp TTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 59999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HchhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026637 81 ECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 125 (235)
Q Consensus 81 ~a~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~ 125 (235)
++....|... ..|+ ++|.++.+.| ++++|++.|++.+..
T Consensus 102 kAl~l~P~~~---~a~~--~Lg~~~~~~g-~~~eAi~~~~~Al~l 140 (723)
T 4gyw_A 102 RAIQINPAFA---DAHS--NLASIHKDSG-NIPEAIASYRTALKL 140 (723)
T ss_dssp HHHHHCTTCH---HHHH--HHHHHHHHTT-CHHHHHHHHHHHHHH
T ss_pred HHHHhCCCCH---HHHH--HHHHHHHHcC-CHHHHHHHHHHHHHh
Confidence 9999987743 3444 5999999998 999999999999987
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.46 E-value=6.1e-13 Score=102.49 Aligned_cols=109 Identities=12% Similarity=0.068 Sum_probs=97.2
Q ss_pred HHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhhccCC
Q 026637 11 IHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCS 90 (235)
Q Consensus 11 ~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~~a~~~w~~~~ 90 (235)
..|+...+|+.+..+...|-.+...|+|++|++.+++|++++|+++.++..+|.++..+|++++|+..+++++...|..+
T Consensus 2 ~ar~a~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 81 (126)
T 4gco_A 2 NARLAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFI 81 (126)
T ss_dssp -----CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred hhHHHHHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhh
Confidence 35677789999999999999999999999999999999999999999999999999999999999999999999987742
Q ss_pred cchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026637 91 SFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 125 (235)
Q Consensus 91 ~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~ 125 (235)
..+..+|.+++..| ++++|++.|++.+..
T Consensus 82 -----~a~~~lg~~~~~~~-~~~~A~~~~~~al~l 110 (126)
T 4gco_A 82 -----KGYIRKAACLVAMR-EWSKAQRAYEDALQV 110 (126)
T ss_dssp -----HHHHHHHHHHHHTT-CHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHCC-CHHHHHHHHHHHHHH
Confidence 34446999999998 999999999999987
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.45 E-value=5.7e-13 Score=122.11 Aligned_cols=119 Identities=11% Similarity=0.100 Sum_probs=111.9
Q ss_pred CCChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCC-HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 026637 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQ-MSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFM 79 (235)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~-~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l 79 (235)
.|+.++++...++++..+|++..++..+|.++...|+ +++|++.+++|++++|+++.+++.+|.++...|++++|+..+
T Consensus 110 ~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~~eAl~~~ 189 (382)
T 2h6f_A 110 DERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFI 189 (382)
T ss_dssp TCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHH
T ss_pred CCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHH
Confidence 4889999999999999999999999999999999997 999999999999999999999999999999999999999999
Q ss_pred HHchhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026637 80 EECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 125 (235)
Q Consensus 80 ~~a~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~ 125 (235)
++++...|.. .+.|.+++.++...| ++++|++.|++.|..
T Consensus 190 ~kal~ldP~~-----~~a~~~lg~~~~~~g-~~~eAl~~~~~al~l 229 (382)
T 2h6f_A 190 ADILNQDAKN-----YHAWQHRQWVIQEFK-LWDNELQYVDQLLKE 229 (382)
T ss_dssp HHHHHHCTTC-----HHHHHHHHHHHHHHT-CCTTHHHHHHHHHHH
T ss_pred HHHHHhCccC-----HHHHHHHHHHHHHcC-ChHHHHHHHHHHHHh
Confidence 9999999873 477778999999998 999999999999987
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.42 E-value=3.5e-12 Score=101.32 Aligned_cols=118 Identities=13% Similarity=0.135 Sum_probs=81.2
Q ss_pred CChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 026637 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEE 81 (235)
Q Consensus 2 G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~~ 81 (235)
|+.++++....+++...|+++.++..+|..+...++++.|.+...+++.++|+++.++..+|.++..+|++++|+..+++
T Consensus 53 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 132 (184)
T 3vtx_A 53 GLPNDAIESLKKFVVLDTTSAEAYYILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEK 132 (184)
T ss_dssp TCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHH
Confidence 45555555555555555555555555566666666666666777777777777777777778888888888888888888
Q ss_pred chhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026637 82 CSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 125 (235)
Q Consensus 82 a~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~ 125 (235)
+....|..+ ..+..+|.++...| ++++|++.|+++|..
T Consensus 133 ~l~~~p~~~-----~~~~~lg~~~~~~g-~~~~A~~~~~~al~~ 170 (184)
T 3vtx_A 133 TISIKPGFI-----RAYQSIGLAYEGKG-LRDEAVKYFKKALEK 170 (184)
T ss_dssp HHHHCTTCH-----HHHHHHHHHHHHTT-CHHHHHHHHHHHHHT
T ss_pred HHHhcchhh-----hHHHHHHHHHHHCC-CHHHHHHHHHHHHhC
Confidence 777776632 23345778887777 788888888777765
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.41 E-value=1.2e-11 Score=98.29 Aligned_cols=119 Identities=16% Similarity=0.114 Sum_probs=111.7
Q ss_pred CCChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 026637 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME 80 (235)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~ 80 (235)
+|+.++|+...++++..+|+++.++..+|.++.+.|++++|+...++++..+|+++.+...++.++...+++++++..++
T Consensus 18 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 97 (184)
T 3vtx_A 18 KGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSANFMIDEKQAAIDALQ 97 (184)
T ss_dssp HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HchhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026637 81 ECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 125 (235)
Q Consensus 81 ~a~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~ 125 (235)
++....|..+ ..+..+|.++...| ++++|++.|++.+..
T Consensus 98 ~a~~~~~~~~-----~~~~~lg~~~~~~g-~~~~A~~~~~~~l~~ 136 (184)
T 3vtx_A 98 RAIALNTVYA-----DAYYKLGLVYDSMG-EHDKAIEAYEKTISI 136 (184)
T ss_dssp HHHHHCTTCH-----HHHHHHHHHHHHTT-CHHHHHHHHHHHHHH
T ss_pred HHHHhCccch-----HHHHHHHHHHHHhC-CchhHHHHHHHHHHh
Confidence 9999987743 34556999999998 999999999999876
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.41 E-value=1.3e-12 Score=107.92 Aligned_cols=121 Identities=13% Similarity=0.047 Sum_probs=103.3
Q ss_pred CCChhhHHHHHHhhcCCCCCChhHHHH----------------HHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 026637 1 MGRPDLCFDIIHQVLPYNQQEDFIFGI----------------LAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCH 64 (235)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~~g~----------------~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halah 64 (235)
.|++++++..+++++..+|+++.++.. +|.++...|++++|+..++++++++|+++.++..+|.
T Consensus 17 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 96 (208)
T 3urz_A 17 AGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAE 96 (208)
T ss_dssp TTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHH
Confidence 489999999999999999999998888 9999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHchhhhccCCcchhHHH---------------------------------HHHHHHHHHhCCCC
Q 026637 65 VLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHN---------------------------------WWHVALCYLEGHSP 111 (235)
Q Consensus 65 vl~~~Gr~~egi~~l~~a~~~w~~~~~~l~~H~---------------------------------~WHlAL~~le~G~~ 111 (235)
++..+|++++|+..++++....|..+. .++ ++..++.++..| +
T Consensus 97 ~~~~~g~~~~A~~~~~~al~~~P~~~~---a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~~~-~ 172 (208)
T 3urz_A 97 MQVCRGQEKDALRMYEKILQLEADNLA---ANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTT-R 172 (208)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCTTCHH---HHHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHH-T
T ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCHH---HHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHcc-C
Confidence 999999999999999999999887431 121 233455555555 7
Q ss_pred HHHHHHHHHhhchh
Q 026637 112 MRKVLEIYDNHIWK 125 (235)
Q Consensus 112 ~deAl~~yd~~i~~ 125 (235)
|++|+..|++.|..
T Consensus 173 ~~~A~~~~~~al~l 186 (208)
T 3urz_A 173 YEKARNSLQKVILR 186 (208)
T ss_dssp HHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHh
Confidence 88888888888765
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.41 E-value=7.9e-12 Score=114.51 Aligned_cols=120 Identities=8% Similarity=0.005 Sum_probs=109.4
Q ss_pred CCC-hhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 026637 1 MGR-PDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFM 79 (235)
Q Consensus 1 ~G~-~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l 79 (235)
+|+ .++++..+++++..+|+++.++..+|.++...|++++|++.+++||+++|+++.++..+|.++...|++++++..+
T Consensus 144 ~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~ 223 (382)
T 2h6f_A 144 LQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYV 223 (382)
T ss_dssp TTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHH
T ss_pred cccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHH
Confidence 476 9999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHchhhhccCCcchhHHHHHHHHHHHHhCCCCHHHH-----HHHHHhhchh
Q 026637 80 EECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKV-----LEIYDNHIWK 125 (235)
Q Consensus 80 ~~a~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deA-----l~~yd~~i~~ 125 (235)
++++...|+.+ ..|.+++.++..++|.+++| ++.|++.|..
T Consensus 224 ~~al~l~P~~~-----~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l 269 (382)
T 2h6f_A 224 DQLLKEDVRNN-----SVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKL 269 (382)
T ss_dssp HHHHHHCTTCH-----HHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCH-----HHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHH
Confidence 99999998843 45567999998844365787 5899999987
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=1.6e-12 Score=128.47 Aligned_cols=119 Identities=10% Similarity=0.064 Sum_probs=111.3
Q ss_pred CCChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 026637 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME 80 (235)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~ 80 (235)
+|+.++|+...++++..+|+++.++..+|.++.+.|++++|++.+++|++++|+++.++.++|.++..+|++++|+..++
T Consensus 56 ~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~ 135 (723)
T 4gyw_A 56 QGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYR 135 (723)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HchhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026637 81 ECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 125 (235)
Q Consensus 81 ~a~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~ 125 (235)
++....|+.+ ..+.++|.++...| ++++|.+.|++.+..
T Consensus 136 ~Al~l~P~~~-----~a~~~L~~~l~~~g-~~~~A~~~~~kal~l 174 (723)
T 4gyw_A 136 TALKLKPDFP-----DAYCNLAHCLQIVC-DWTDYDERMKKLVSI 174 (723)
T ss_dssp HHHHHCSCCH-----HHHHHHHHHHHHTT-CCTTHHHHHHHHHHH
T ss_pred HHHHhCCCCh-----HHHhhhhhHHHhcc-cHHHHHHHHHHHHHh
Confidence 9999998743 34456999999998 999999999888764
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.39 E-value=9.6e-12 Score=91.05 Aligned_cols=118 Identities=14% Similarity=0.233 Sum_probs=108.6
Q ss_pred CChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 026637 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEE 81 (235)
Q Consensus 2 G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~~ 81 (235)
|+.++++...++++...|+++..+..+|..+...|++++|++..++++.++|+++.++..++.++...|++++|+..+++
T Consensus 15 ~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 94 (136)
T 2fo7_A 15 GDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQK 94 (136)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026637 82 CSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 125 (235)
Q Consensus 82 a~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~ 125 (235)
.....|..+ ..+..+|.++...| ++++|+..|++.+..
T Consensus 95 ~~~~~~~~~-----~~~~~la~~~~~~~-~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 95 ALELDPRSA-----EAWYNLGNAYYKQG-DYDEAIEYYQKALEL 132 (136)
T ss_dssp HHHHCTTCH-----HHHHHHHHHHHTTT-CHHHHHHHHHHHHHH
T ss_pred HHHhCCCCh-----HHHHHHHHHHHHHc-cHHHHHHHHHHHHcc
Confidence 998876632 34556999999998 999999999988765
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.39 E-value=6.5e-12 Score=99.59 Aligned_cols=118 Identities=12% Similarity=0.084 Sum_probs=106.8
Q ss_pred CChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH-HHHcCCH--HHHHHH
Q 026637 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHV-LQHDCCF--KEAVQF 78 (235)
Q Consensus 2 G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahv-l~~~Gr~--~egi~~ 78 (235)
|+.++++..+++++..+|+++.++..+|..+...|++++|+..++++++++|+++.++..+|.+ +...|++ ++|+..
T Consensus 24 ~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A~~~ 103 (177)
T 2e2e_A 24 QNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAM 103 (177)
T ss_dssp ---CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHHHHH
Confidence 6788899999999999999999999999999999999999999999999999999999999999 7799998 999999
Q ss_pred HHHchhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026637 79 MEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 125 (235)
Q Consensus 79 l~~a~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~ 125 (235)
++++....|..+ ..+..+|.+++..| ++++|+..|++.+..
T Consensus 104 ~~~al~~~p~~~-----~~~~~la~~~~~~g-~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 104 IDKALALDSNEI-----TALMLLASDAFMQA-NYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHCTTCH-----HHHHHHHHHHHHTT-CHHHHHHHHHHHHHT
T ss_pred HHHHHHhCCCcH-----HHHHHHHHHHHHcc-cHHHHHHHHHHHHhh
Confidence 999999987742 34556999999998 999999999999876
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=99.38 E-value=5e-12 Score=97.48 Aligned_cols=121 Identities=8% Similarity=0.003 Sum_probs=107.8
Q ss_pred CCChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 026637 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME 80 (235)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~ 80 (235)
.|+.++++...++++...|+++.++..+|.++...|++++|++.++++++++|+++.++..+|.++...|++++|+..++
T Consensus 26 ~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~ 105 (166)
T 1a17_A 26 AKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYE 105 (166)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HchhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026637 81 ECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 125 (235)
Q Consensus 81 ~a~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~ 125 (235)
++....|..+ ..+.....+..++..| ++++|++.|.+....
T Consensus 106 ~a~~~~p~~~---~~~~~~~~~~~~~~~~-~~~~A~~~~~~~~~~ 146 (166)
T 1a17_A 106 TVVKVKPHDK---DAKMKYQECNKIVKQK-AFERAIAGDEHKRSV 146 (166)
T ss_dssp HHHHHSTTCH---HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
T ss_pred HHHHhCCCCH---HHHHHHHHHHHHHHHH-HHHHHHHcccchHHH
Confidence 9999987743 2344445665688887 999999999875543
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.38 E-value=5.6e-12 Score=103.71 Aligned_cols=124 Identities=10% Similarity=0.025 Sum_probs=111.6
Q ss_pred CCChhhHHHHHHhhcCCCC-CChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 026637 1 MGRPDLCFDIIHQVLPYNQ-QEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFM 79 (235)
Q Consensus 1 ~G~~~~al~~~~ral~~~p-~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l 79 (235)
.|+.++++...++++...| .++.++..+|.++...|++++|++.+++++.++|+++.++..+|.++..+|++++|+..+
T Consensus 20 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~ 99 (228)
T 4i17_A 20 AKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAAYRDMKNNQEYIATL 99 (228)
T ss_dssp TTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHcccHHHHHHHH
Confidence 4899999999999999998 888888899999999999999999999999999999999999999999999999999999
Q ss_pred HHchhhhccCCcch--hHHHHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026637 80 EECSSTWSSCSSFM--YTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 125 (235)
Q Consensus 80 ~~a~~~w~~~~~~l--~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~ 125 (235)
+++....|..+.+. ....+..+|.+++..| ++++|++.|++.+..
T Consensus 100 ~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~-~~~~A~~~~~~al~~ 146 (228)
T 4i17_A 100 TEGIKAVPGNATIEKLYAIYYLKEGQKFQQAG-NIEKAEENYKHATDV 146 (228)
T ss_dssp HHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHTTS
T ss_pred HHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhc-cHHHHHHHHHHHHhc
Confidence 99999988843110 0124567999999998 999999999999876
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.38 E-value=1.1e-10 Score=93.46 Aligned_cols=190 Identities=11% Similarity=0.043 Sum_probs=136.7
Q ss_pred CCChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc-CCHHHHHHHH
Q 026637 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHD-CCFKEAVQFM 79 (235)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~-Gr~~egi~~l 79 (235)
.|+.++++..+++++...|+++.++..+|.++...|++++|.+..++++.++|+++.++..++.++... |++++|+..+
T Consensus 21 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~ 100 (225)
T 2vq2_A 21 GQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYF 100 (225)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 489999999999999999999999999999999999999999999999999999999999999999999 9999999999
Q ss_pred HHchhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchhhhcCCCCCchHhHhHHHHHHHHHHhcCccccccc
Q 026637 80 EECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNALGLLLRVYVRGELDVFGN 159 (235)
Q Consensus 80 ~~a~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~~~~~~~~~~~~~~~da~sLL~Rl~l~G~~~~~g~ 159 (235)
++... .|..|.. ...+..+|.++...| ++++|+..|++.+... +. ....+..-+.++++ .|.. ..
T Consensus 101 ~~~~~-~~~~~~~--~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~--~~---~~~~~~~la~~~~~---~~~~---~~ 165 (225)
T 2vq2_A 101 DKALA-DPTYPTP--YIANLNKGICSAKQG-QFGLAEAYLKRSLAAQ--PQ---FPPAFKELARTKML---AGQL---GD 165 (225)
T ss_dssp HHHHT-STTCSCH--HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHS--TT---CHHHHHHHHHHHHH---HTCH---HH
T ss_pred HHHHc-CcCCcch--HHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhC--CC---CchHHHHHHHHHHH---cCCH---HH
Confidence 99988 3333322 345556999999998 9999999999988763 22 12222222222222 1221 11
Q ss_pred chHHHHHHHHhhhcchhcchhhHHHHHHHhcCCCchHHHHHHHHHHHH
Q 026637 160 RLKVLADCVADQANWYLECHLDLLILWALANTGEVSKAEDLLKGLKSR 207 (235)
Q Consensus 160 rw~~la~~~~~~~~~~~~~F~d~H~~~al~~ag~~~~~~~ll~~~~~~ 207 (235)
-.+.+-......+......+ ......+...|+.+.+...++.+...
T Consensus 166 A~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 166 ADYYFKKYQSRVEVLQADDL--LLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHHHHHHHHHCSCCHHHH--HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHH--HHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 12222222221120222122 22344456788888888888887654
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.37 E-value=1.2e-11 Score=95.79 Aligned_cols=118 Identities=13% Similarity=0.065 Sum_probs=61.9
Q ss_pred CChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 026637 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEE 81 (235)
Q Consensus 2 G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~~ 81 (235)
|+.++++..+++++...|+++.++..+|..+...|++++|++..++++.++|+++.++..+|.++...|++++|+..+++
T Consensus 56 ~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 135 (186)
T 3as5_A 56 GAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKI 135 (186)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 45555555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred chhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026637 82 CSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 125 (235)
Q Consensus 82 a~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~ 125 (235)
+....|.. ...+..+|.++...| ++++|++.|++.+..
T Consensus 136 ~~~~~~~~-----~~~~~~la~~~~~~~-~~~~A~~~~~~~~~~ 173 (186)
T 3as5_A 136 ALGLRPNE-----GKVHRAIAFSYEQMG-RHEEALPHFKKANEL 173 (186)
T ss_dssp HHHHCTTC-----HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHH
T ss_pred HHhcCccc-----hHHHHHHHHHHHHcC-CHHHHHHHHHHHHHc
Confidence 55544332 123333555555554 555555555555443
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.35 E-value=1.7e-10 Score=95.06 Aligned_cols=188 Identities=14% Similarity=0.056 Sum_probs=136.1
Q ss_pred CCChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 026637 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME 80 (235)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~ 80 (235)
.|+.++++..+++++...|+++.++..+|..+...|++++|++.++++++++|+++.++..++.++..+|++++|+..++
T Consensus 50 ~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 129 (252)
T 2ho1_A 50 RGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLL 129 (252)
T ss_dssp TTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 48899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HchhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchhhhcCCCCCchHhHhHHHHHHHHHHhcCcccccccc
Q 026637 81 ECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNALGLLLRVYVRGELDVFGNR 160 (235)
Q Consensus 81 ~a~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~~~~~~~~~~~~~~~da~sLL~Rl~l~G~~~~~g~r 160 (235)
++.. .+..|.. ...+..+|.+++..| ++++|++.|++.+... +. ....+..-+.++.+ .| +
T Consensus 130 ~~~~-~~~~~~~--~~~~~~la~~~~~~g-~~~~A~~~~~~~~~~~--~~---~~~~~~~la~~~~~---~g-------~ 190 (252)
T 2ho1_A 130 EASQ-DTLYPER--SRVFENLGLVSLQMK-KPAQAKEYFEKSLRLN--RN---QPSVALEMADLLYK---ER-------E 190 (252)
T ss_dssp HHTT-CTTCTTH--HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHC--SC---CHHHHHHHHHHHHH---TT-------C
T ss_pred HHHh-CccCccc--HHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcC--cc---cHHHHHHHHHHHHH---cC-------C
Confidence 9988 2222222 235556999999998 9999999999988763 21 12222222222211 12 2
Q ss_pred hHHHHHHHHhhhcchhcchhhHHH--HHHHhcCCCchHHHHHHHHHHHHh
Q 026637 161 LKVLADCVADQANWYLECHLDLLI--LWALANTGEVSKAEDLLKGLKSRH 208 (235)
Q Consensus 161 w~~la~~~~~~~~~~~~~F~d~H~--~~al~~ag~~~~~~~ll~~~~~~~ 208 (235)
++.-...+..-..... ...+.+. ...+...|+.+.+.+.++.+....
T Consensus 191 ~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 191 YVPARQYYDLFAQGGG-QNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHHHHHHHHHHHTTSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhCc-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 3333333332111100 1122333 445567888888888888776653
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.34 E-value=4.7e-11 Score=100.47 Aligned_cols=122 Identities=11% Similarity=0.053 Sum_probs=109.5
Q ss_pred CCChhhHHHHHHhhcCCCCCC---hhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHH------
Q 026637 1 MGRPDLCFDIIHQVLPYNQQE---DFIFGILAFSLLELGQMSDAEEAAKKGLKINKHD---CWSQHALCHVLQH------ 68 (235)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~---~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~d---awA~halahvl~~------ 68 (235)
.|++++|....++++..+|++ +.++..+|.++...|++++|+..+++++.++|++ +.++..+|.++..
T Consensus 28 ~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~ 107 (261)
T 3qky_A 28 QGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLSPPYE 107 (261)
T ss_dssp TTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCCCTT
T ss_pred hCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhccccc
Confidence 489999999999999999998 7899999999999999999999999999998865 6789999999999
Q ss_pred --cCCHHHHHHHHHHchhhhccCCcchhHHHH--------------HHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026637 69 --DCCFKEAVQFMEECSSTWSSCSSFMYTHNW--------------WHVALCYLEGHSPMRKVLEIYDNHIWK 125 (235)
Q Consensus 69 --~Gr~~egi~~l~~a~~~w~~~~~~l~~H~~--------------WHlAL~~le~G~~~deAl~~yd~~i~~ 125 (235)
+|++++|+..+++.....|..+.. .... +.+|.+++..| ++++|+..|++.+..
T Consensus 108 ~~~~~~~~A~~~~~~~l~~~p~~~~~--~~a~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~~l~~ 177 (261)
T 3qky_A 108 LDQTDTRKAIEAFQLFIDRYPNHELV--DDATQKIRELRAKLARKQYEAARLYERRE-LYEAAAVTYEAVFDA 177 (261)
T ss_dssp SCCHHHHHHHHHHHHHHHHCTTCTTH--HHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHHHHCcCchhH--HHHHHHHHHHHHHHHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHH
Confidence 999999999999999999885522 1111 57899999998 999999999999876
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.34 E-value=3.3e-11 Score=93.29 Aligned_cols=118 Identities=9% Similarity=0.056 Sum_probs=109.7
Q ss_pred CChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 026637 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEE 81 (235)
Q Consensus 2 G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~~ 81 (235)
|+.++++..+++++...|+++.++..+|..+...|++++|....+++++++|+++.++..++.++...|++++|+..+++
T Consensus 22 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 101 (186)
T 3as5_A 22 GRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIK 101 (186)
T ss_dssp TCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026637 82 CSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 125 (235)
Q Consensus 82 a~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~ 125 (235)
.....|..+ ..+..+|.++...| ++++|+..|.+.+..
T Consensus 102 ~~~~~~~~~-----~~~~~~a~~~~~~~-~~~~A~~~~~~~~~~ 139 (186)
T 3as5_A 102 VAEANPINF-----NVRFRLGVALDNLG-RFDEAIDSFKIALGL 139 (186)
T ss_dssp HHHHCTTCH-----HHHHHHHHHHHHTT-CHHHHHHHHHHHHHH
T ss_pred HHhcCcHhH-----HHHHHHHHHHHHcC-cHHHHHHHHHHHHhc
Confidence 999877632 34556899999998 999999999998876
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.34 E-value=3.5e-10 Score=95.79 Aligned_cols=118 Identities=11% Similarity=0.090 Sum_probs=100.3
Q ss_pred CChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhC-CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 026637 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELG-QMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME 80 (235)
Q Consensus 2 G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g-~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~ 80 (235)
|+.++++..+++++..+|+++.++..+|..+...| ++++|++.+++++.++|+++.++..+|.++...|++++|+..++
T Consensus 70 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 149 (330)
T 3hym_B 70 NKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYF 149 (330)
T ss_dssp TCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 78888888888888888888888888999888998 89999999999999999999999999999999999999999999
Q ss_pred HchhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026637 81 ECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 125 (235)
Q Consensus 81 ~a~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~ 125 (235)
++....|..+ ..+..+|..+...| ++++|+..|++.+..
T Consensus 150 ~a~~~~~~~~-----~~~~~l~~~~~~~~-~~~~A~~~~~~al~~ 188 (330)
T 3hym_B 150 TAAQLMKGCH-----LPMLYIGLEYGLTN-NSKLAERFFSQALSI 188 (330)
T ss_dssp HHHHHTTTCS-----HHHHHHHHHHHHTT-CHHHHHHHHHHHHTT
T ss_pred HHHHhccccH-----HHHHHHHHHHHHHh-hHHHHHHHHHHHHHh
Confidence 8888877643 23334888888887 899999999888765
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=99.33 E-value=5.7e-12 Score=101.12 Aligned_cols=88 Identities=13% Similarity=-0.061 Sum_probs=85.8
Q ss_pred CCChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 026637 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME 80 (235)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~ 80 (235)
.|+.++|...+++++..+|+++.++..+|.++...|+|++|++.+++|++++|+++.++..+|.++...|++++|+..++
T Consensus 49 ~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~~lg~~~eA~~~~~ 128 (151)
T 3gyz_A 49 KGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFE 128 (151)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Hchhhhcc
Q 026637 81 ECSSTWSS 88 (235)
Q Consensus 81 ~a~~~w~~ 88 (235)
++....|+
T Consensus 129 ~al~l~~~ 136 (151)
T 3gyz_A 129 LVIQHSND 136 (151)
T ss_dssp HHHHHCCC
T ss_pred HHHHhCCC
Confidence 99998766
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.33 E-value=7.8e-11 Score=103.88 Aligned_cols=119 Identities=15% Similarity=0.083 Sum_probs=73.6
Q ss_pred CCChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 026637 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME 80 (235)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~ 80 (235)
+|+.++++...++++...|+++.++..+|.++...|++++|++.++++++++|+++.++..+|.++...|++++++..++
T Consensus 148 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~ 227 (388)
T 1w3b_A 148 LGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYL 227 (388)
T ss_dssp TSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 35666666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HchhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026637 81 ECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 125 (235)
Q Consensus 81 ~a~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~ 125 (235)
++....|..+ ..+..++..+...| ++++|++.|++.+..
T Consensus 228 ~al~~~p~~~-----~~~~~l~~~~~~~g-~~~~A~~~~~~al~~ 266 (388)
T 1w3b_A 228 RALSLSPNHA-----VVHGNLACVYYEQG-LIDLAIDTYRRAIEL 266 (388)
T ss_dssp HHHHHCTTCH-----HHHHHHHHHHHHTT-CHHHHHHHHHHHHHT
T ss_pred HHHhhCcCCH-----HHHHHHHHHHHHcC-CHHHHHHHHHHHHhh
Confidence 6666554421 22223566666665 666666666665544
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.32 E-value=1.4e-10 Score=94.39 Aligned_cols=187 Identities=12% Similarity=0.062 Sum_probs=132.8
Q ss_pred CCChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 026637 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME 80 (235)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~ 80 (235)
.|+.++++..+++++...|+++.++..+|.++...|++++|++.++++++++|+++.++..++.++..+|++++|+..++
T Consensus 36 ~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 115 (243)
T 2q7f_A 36 FGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFE 115 (243)
T ss_dssp ------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHH
Confidence 37889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HchhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchhhhcCCCCCchHhHhHHHHHHHHHHhcCcccccccc
Q 026637 81 ECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNALGLLLRVYVRGELDVFGNR 160 (235)
Q Consensus 81 ~a~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~~~~~~~~~~~~~~~da~sLL~Rl~l~G~~~~~g~r 160 (235)
+.....|..+ ..+..+|.+++..| ++++|+..|++.+... +. ....+..-+.++.+ .|.. ..-
T Consensus 116 ~~~~~~~~~~-----~~~~~~a~~~~~~~-~~~~A~~~~~~~~~~~--~~---~~~~~~~l~~~~~~---~~~~---~~A 178 (243)
T 2q7f_A 116 KALRAGMENG-----DLFYMLGTVLVKLE-QPKLALPYLQRAVELN--EN---DTEARFQFGMCLAN---EGML---DEA 178 (243)
T ss_dssp HHHHHTCCSH-----HHHHHHHHHHHHTS-CHHHHHHHHHHHHHHC--TT---CHHHHHHHHHHHHH---HTCC---HHH
T ss_pred HHHHhCCCCH-----HHHHHHHHHHHHhc-cHHHHHHHHHHHHHhC--Cc---cHHHHHHHHHHHHH---cCCH---HHH
Confidence 9999887743 34556999999998 9999999999988763 22 12222222222221 2221 111
Q ss_pred hHHHHHHHHhhhcchhcchhhHHHHHHHhcCCCchHHHHHHHHHHHH
Q 026637 161 LKVLADCVADQANWYLECHLDLLILWALANTGEVSKAEDLLKGLKSR 207 (235)
Q Consensus 161 w~~la~~~~~~~~~~~~~F~d~H~~~al~~ag~~~~~~~ll~~~~~~ 207 (235)
.+.+-......+ ... ..-.....++...|+.+.+.+.++..-..
T Consensus 179 ~~~~~~~~~~~~-~~~--~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 179 LSQFAAVTEQDP-GHA--DAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHHHCT-TCH--HHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCc-ccH--HHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 222222222111 111 12233455667789988888877766554
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.32 E-value=1.7e-10 Score=100.71 Aligned_cols=88 Identities=10% Similarity=0.076 Sum_probs=83.4
Q ss_pred CCChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 026637 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME 80 (235)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~ 80 (235)
.|+.++++..+++++..+|+++.++..+|.++...|++++|++.++++++++|+++.++..+|.++..+|++++|+..++
T Consensus 78 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 157 (365)
T 4eqf_A 78 EGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALK 157 (365)
T ss_dssp HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccccHHHHHHHHH
Confidence 38899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Hchhhhcc
Q 026637 81 ECSSTWSS 88 (235)
Q Consensus 81 ~a~~~w~~ 88 (235)
++....|.
T Consensus 158 ~al~~~p~ 165 (365)
T 4eqf_A 158 NWIKQNPK 165 (365)
T ss_dssp HHHHHCHH
T ss_pred HHHHhCcc
Confidence 99877655
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.31 E-value=4.6e-10 Score=97.13 Aligned_cols=124 Identities=9% Similarity=0.048 Sum_probs=108.3
Q ss_pred CCChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 026637 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME 80 (235)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~ 80 (235)
.|+.++++..+++++...|+++.++..+|.++...|++++|++.++++++++|+++.++..+|.++...|++++|+..++
T Consensus 77 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 156 (368)
T 1fch_A 77 EGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILR 156 (368)
T ss_dssp TTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HchhhhccCCcch----------------------------------------------hHHHHHHHHHHHHhCCCCHHH
Q 026637 81 ECSSTWSSCSSFM----------------------------------------------YTHNWWHVALCYLEGHSPMRK 114 (235)
Q Consensus 81 ~a~~~w~~~~~~l----------------------------------------------~~H~~WHlAL~~le~G~~~de 114 (235)
++....|..+... ....+..+|.++...| ++++
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g-~~~~ 235 (368)
T 1fch_A 157 DWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSG-EYDK 235 (368)
T ss_dssp HHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTT-CHHH
T ss_pred HHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcC-CHHH
Confidence 9887766543221 1234456888888887 8888
Q ss_pred HHHHHHhhchh
Q 026637 115 VLEIYDNHIWK 125 (235)
Q Consensus 115 Al~~yd~~i~~ 125 (235)
|+..|++.+..
T Consensus 236 A~~~~~~al~~ 246 (368)
T 1fch_A 236 AVDCFTAALSV 246 (368)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 88888888776
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.31 E-value=1.3e-11 Score=94.97 Aligned_cols=89 Identities=10% Similarity=0.051 Sum_probs=86.7
Q ss_pred CCChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 026637 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME 80 (235)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~ 80 (235)
.|++++|+...++++..+|.++.++..+|.++...|++++|++.+++|++++|+++.++..+|.++..+|++++|+..++
T Consensus 26 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~ 105 (126)
T 4gco_A 26 KGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYE 105 (126)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HchhhhccC
Q 026637 81 ECSSTWSSC 89 (235)
Q Consensus 81 ~a~~~w~~~ 89 (235)
++....|+.
T Consensus 106 ~al~l~P~~ 114 (126)
T 4gco_A 106 DALQVDPSN 114 (126)
T ss_dssp HHHHHCTTC
T ss_pred HHHHHCcCC
Confidence 999999874
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.31 E-value=3.2e-10 Score=96.05 Aligned_cols=120 Identities=9% Similarity=-0.020 Sum_probs=111.0
Q ss_pred CC-ChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 026637 1 MG-RPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFM 79 (235)
Q Consensus 1 ~G-~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l 79 (235)
.| +.++++..+++++..+|.++.++..+|..+...|++++|++.++++++++|++..++..+|.++...|++++|+..+
T Consensus 103 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 182 (330)
T 3hym_B 103 VGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFF 182 (330)
T ss_dssp SCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 36 88999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHchhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchhh
Q 026637 80 EECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE 126 (235)
Q Consensus 80 ~~a~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~~ 126 (235)
+++....|..+ ..+..+|.+++..| ++++|+..|++.+...
T Consensus 183 ~~al~~~~~~~-----~~~~~l~~~~~~~~-~~~~A~~~~~~a~~~~ 223 (330)
T 3hym_B 183 SQALSIAPEDP-----FVMHEVGVVAFQNG-EWKTAEKWFLDALEKI 223 (330)
T ss_dssp HHHHTTCTTCH-----HHHHHHHHHHHHTT-CHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCh-----HHHHHHHHHHHHcc-cHHHHHHHHHHHHHHh
Confidence 99999987742 34446999999998 9999999999998863
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.31 E-value=1.6e-10 Score=101.97 Aligned_cols=117 Identities=15% Similarity=-0.015 Sum_probs=61.6
Q ss_pred CChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 026637 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEE 81 (235)
Q Consensus 2 G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~~ 81 (235)
|+.+++....++++..+|.++.++..+|.++...|++++|++.++++++++|+++.++..++.++...|++++|+..+++
T Consensus 47 ~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 126 (388)
T 1w3b_A 47 RRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVS 126 (388)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 45555555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred chhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhch
Q 026637 82 CSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIW 124 (235)
Q Consensus 82 a~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~ 124 (235)
+....|... ..+..++.++...| ++++|++.|++.+.
T Consensus 127 al~~~p~~~-----~~~~~l~~~~~~~g-~~~~A~~~~~~al~ 163 (388)
T 1w3b_A 127 ALQYNPDLY-----CVRSDLGNLLKALG-RLEEAKACYLKAIE 163 (388)
T ss_dssp HHHHCTTCT-----HHHHHHHHHHHTTS-CHHHHHHHHHHHHH
T ss_pred HHHhCCCcH-----HHHHHHHHHHHHcc-CHHHHHHHHHHHHH
Confidence 555444321 11222444444444 45555555544443
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.31 E-value=1.1e-11 Score=108.27 Aligned_cols=120 Identities=11% Similarity=0.052 Sum_probs=111.2
Q ss_pred CCChhhHHHHHHhhcCCCCC--ChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 026637 1 MGRPDLCFDIIHQVLPYNQQ--EDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQF 78 (235)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~--~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~ 78 (235)
.|+.++++...++++...|+ ++.++..+|.++...|++++|++.++++++++|+++.++..+|.++..+|++++|+..
T Consensus 190 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 269 (365)
T 4eqf_A 190 SSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEA 269 (365)
T ss_dssp CHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 46789999999999999999 8999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHchhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchhh
Q 026637 79 MEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE 126 (235)
Q Consensus 79 l~~a~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~~ 126 (235)
++++....|.. ...+..+|.++...| ++++|+..|++.+...
T Consensus 270 ~~~al~~~p~~-----~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~ 311 (365)
T 4eqf_A 270 YTRALEIQPGF-----IRSRYNLGISCINLG-AYREAVSNFLTALSLQ 311 (365)
T ss_dssp HHHHHHHCTTC-----HHHHHHHHHHHHHHT-CCHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCc-----hHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhC
Confidence 99999998774 245556999999998 9999999999998874
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.30 E-value=3e-11 Score=90.71 Aligned_cols=101 Identities=13% Similarity=0.021 Sum_probs=91.3
Q ss_pred CCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhhccCCcchhHHHH
Q 026637 19 QQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNW 98 (235)
Q Consensus 19 p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~~a~~~w~~~~~~l~~H~~ 98 (235)
|..+..+...|..+...|+|++|++.++++++++|+++.++..+|.++..+|++++|+..++++....|..+ ..+
T Consensus 1 p~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~-----~~~ 75 (126)
T 3upv_A 1 SMKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFV-----RAY 75 (126)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-----HHH
T ss_pred CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcH-----HHH
Confidence 345667888999999999999999999999999999999999999999999999999999999999987742 345
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026637 99 WHVALCYLEGHSPMRKVLEIYDNHIWK 125 (235)
Q Consensus 99 WHlAL~~le~G~~~deAl~~yd~~i~~ 125 (235)
..+|.+++..| ++++|+..|++.+..
T Consensus 76 ~~lg~~~~~~~-~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 76 IRKATAQIAVK-EYASALETLDAARTK 101 (126)
T ss_dssp HHHHHHHHHTT-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh-CHHHHHHHHHHHHHh
Confidence 56999999998 999999999998876
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.30 E-value=2.1e-11 Score=100.21 Aligned_cols=119 Identities=7% Similarity=0.026 Sum_probs=108.1
Q ss_pred CCChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCH-------HHHHHHHHHHHHcCCHH
Q 026637 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDC-------WSQHALCHVLQHDCCFK 73 (235)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~da-------wA~halahvl~~~Gr~~ 73 (235)
+|+.++++..+++++..+|+++.++..+|.++...|++++|++..+++++++|+++ .++..+|.++..+|+++
T Consensus 55 ~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~ 134 (228)
T 4i17_A 55 IKKYKEAADYFDIAIKKNYNLANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIE 134 (228)
T ss_dssp TTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHH
T ss_pred hhcHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHH
Confidence 58999999999999999999999999999999999999999999999999999999 77999999999999999
Q ss_pred HHHHHHHHchhhhcc--CCcchhHHHHHHHHHHHHhCCCCH---------------------------HHHHHHHHhhch
Q 026637 74 EAVQFMEECSSTWSS--CSSFMYTHNWWHVALCYLEGHSPM---------------------------RKVLEIYDNHIW 124 (235)
Q Consensus 74 egi~~l~~a~~~w~~--~~~~l~~H~~WHlAL~~le~G~~~---------------------------deAl~~yd~~i~ 124 (235)
+|+..++++....|. .+ ..+..+|.+++..| +. ++|+..|++.+.
T Consensus 135 ~A~~~~~~al~~~p~~~~~-----~~~~~l~~~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~ 208 (228)
T 4i17_A 135 KAEENYKHATDVTSKKWKT-----DALYSLGVLFYNNG-ADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVT 208 (228)
T ss_dssp HHHHHHHHHTTSSCHHHHH-----HHHHHHHHHHHHHH-HHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCcccH-----HHHHHHHHHHHHHH-HHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999998765 32 34446899998887 77 889999998887
Q ss_pred h
Q 026637 125 K 125 (235)
Q Consensus 125 ~ 125 (235)
.
T Consensus 209 l 209 (228)
T 4i17_A 209 L 209 (228)
T ss_dssp H
T ss_pred c
Confidence 6
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.30 E-value=3.1e-11 Score=92.69 Aligned_cols=105 Identities=10% Similarity=0.081 Sum_probs=91.8
Q ss_pred CChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhhccCCcc--hhHHH
Q 026637 20 QEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSF--MYTHN 97 (235)
Q Consensus 20 ~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~~a~~~w~~~~~~--l~~H~ 97 (235)
+.+.++..+|..+...|+|++|++.+++|++++|+++.++.++|.++..+|++++|+..+++++...|..+.. ..+..
T Consensus 6 d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~ 85 (127)
T 4gcn_A 6 DAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKA 85 (127)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHH
Confidence 4456778899999999999999999999999999999999999999999999999999999999888775432 12235
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026637 98 WWHVALCYLEGHSPMRKVLEIYDNHIWK 125 (235)
Q Consensus 98 ~WHlAL~~le~G~~~deAl~~yd~~i~~ 125 (235)
+..+|.++...| ++++|++.|.+.+..
T Consensus 86 ~~~lg~~~~~~~-~~~~A~~~~~kal~~ 112 (127)
T 4gcn_A 86 MSRAGNAFQKQN-DLSLAVQWFHRSLSE 112 (127)
T ss_dssp HHHHHHHHHHTT-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC-CHHHHHHHHHHHHhh
Confidence 566999999998 999999999999875
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=99.29 E-value=9.6e-11 Score=94.65 Aligned_cols=121 Identities=13% Similarity=0.060 Sum_probs=106.4
Q ss_pred CCChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 026637 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME 80 (235)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~ 80 (235)
.|+.++++...+++++ .++.++..+|.++...|++++|++.++++++++|+++.++..+|.++..+|++++|+..++
T Consensus 19 ~~~~~~A~~~~~~a~~---~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~ 95 (213)
T 1hh8_A 19 KKDWKGALDAFSAVQD---PHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLK 95 (213)
T ss_dssp TTCHHHHHHHHHTSSS---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHcC---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcccHHHHHHHHH
Confidence 4899999999999973 3788999999999999999999999999999999999999999999999999999999999
Q ss_pred HchhhhccCCc-----------chhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026637 81 ECSSTWSSCSS-----------FMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 125 (235)
Q Consensus 81 ~a~~~w~~~~~-----------~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~ 125 (235)
++....|..+. ......+..+|.++...| ++++|++.|++.+..
T Consensus 96 ~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 96 EALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKE-EWKKAEEQLALATSM 150 (213)
T ss_dssp HHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHTT
T ss_pred HHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHcc-CHHHHHHHHHHHHHc
Confidence 99997766330 001235556999999998 999999999999876
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=5e-11 Score=112.08 Aligned_cols=118 Identities=13% Similarity=0.050 Sum_probs=79.4
Q ss_pred CChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 026637 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEE 81 (235)
Q Consensus 2 G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~~ 81 (235)
|+.++++..+++++..+|+++.++..+|..+...|++++|++.+++|++++|+++.++..+|.++..+|++++|+..+++
T Consensus 3 g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 82 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQ 82 (568)
T ss_dssp ------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 67778888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred chhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026637 82 CSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 125 (235)
Q Consensus 82 a~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~ 125 (235)
+....|..+ ..+..+|.+++..| ++++|++.|++.+..
T Consensus 83 al~~~p~~~-----~~~~~la~~~~~~g-~~~~A~~~~~~al~~ 120 (568)
T 2vsy_A 83 ASDAAPEHP-----GIALWLGHALEDAG-QAEAAAAAYTRAHQL 120 (568)
T ss_dssp HHHHCTTCH-----HHHHHHHHHHHHTT-CHHHHHHHHHHHHHH
T ss_pred HHhcCCCCH-----HHHHHHHHHHHHcC-CHHHHHHHHHHHHHh
Confidence 888776632 23335788888887 788888888887766
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.29 E-value=1e-11 Score=94.82 Aligned_cols=95 Identities=11% Similarity=-0.061 Sum_probs=84.2
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhhccCCcchhHHHHHHHHHH
Q 026637 25 FGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALC 104 (235)
Q Consensus 25 ~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~~a~~~w~~~~~~l~~H~~WHlAL~ 104 (235)
+..+|..+.+.|++++|+..++++++++|+++.++..+|.++...|++++|+..++++....|..+ -.+..+|.+
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~-----~~~~~la~~ 94 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDI-----AVHAALAVS 94 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-----HHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHH
Confidence 456778899999999999999999999999999999999999999999999999999999988743 344569999
Q ss_pred HHhCCCCHHHHHHHHHhhchh
Q 026637 105 YLEGHSPMRKVLEIYDNHIWK 125 (235)
Q Consensus 105 ~le~G~~~deAl~~yd~~i~~ 125 (235)
+...| ++++|++.|++.+..
T Consensus 95 ~~~~g-~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 95 HTNEH-NANAALASLRAWLLS 114 (121)
T ss_dssp HHHHH-HHHHHHHHHHHHHC-
T ss_pred HHHcC-CHHHHHHHHHHHHHh
Confidence 99998 999999999998753
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.29 E-value=3.6e-11 Score=97.94 Aligned_cols=118 Identities=16% Similarity=0.187 Sum_probs=62.0
Q ss_pred CChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 026637 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEE 81 (235)
Q Consensus 2 G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~~ 81 (235)
|+.++++..+++++...|.++.++..+|..+...|++++|+...+++++++|+++.+...+|.++...|++++|+..+++
T Consensus 105 ~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 184 (243)
T 2q7f_A 105 EMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAA 184 (243)
T ss_dssp TCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 45555555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred chhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026637 82 CSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 125 (235)
Q Consensus 82 a~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~ 125 (235)
+....|..+ ..+..+|.++...| ++++|+..|++.+..
T Consensus 185 ~~~~~~~~~-----~~~~~la~~~~~~~-~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 185 VTEQDPGHA-----DAFYNAGVTYAYKE-NREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHCTTCH-----HHHHHHHHHHHHTT-CTTHHHHHHHHHHHH
T ss_pred HHHhCcccH-----HHHHHHHHHHHHcc-CHHHHHHHHHHHHcc
Confidence 555443321 22333555555554 555555555555443
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.28 E-value=1.6e-09 Score=92.28 Aligned_cols=191 Identities=7% Similarity=-0.041 Sum_probs=137.8
Q ss_pred CCChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 026637 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME 80 (235)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~ 80 (235)
.|+.++++..+++++...|+++.++..+|.++...|++++|++..+++++++|+++.++..+|.++...|++++++..++
T Consensus 133 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 212 (359)
T 3ieg_A 133 GADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVR 212 (359)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 48899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HchhhhccCCcchhHHHH----------HHHHHHHHhCCCCHHHHHHHHHhhchhhhcCCCCCchHhHhHHHHHHHHHHh
Q 026637 81 ECSSTWSSCSSFMYTHNW----------WHVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNALGLLLRVYV 150 (235)
Q Consensus 81 ~a~~~w~~~~~~l~~H~~----------WHlAL~~le~G~~~deAl~~yd~~i~~~~~~~~~~~~~~~~da~sLL~Rl~l 150 (235)
++....|..+. .+.+ +.+|..++..| ++++|+..|++.+... ++. ......+...+-....
T Consensus 213 ~a~~~~~~~~~---~~~~~~~~~~~~~~~~~a~~~~~~~-~~~~A~~~~~~~~~~~--~~~---~~~~~~~~~~la~~~~ 283 (359)
T 3ieg_A 213 ECLKLDQDHKR---CFAHYKQVKKLNKLIESAEELIRDG-RYTDATSKYESVMKTE--PSV---AEYTVRSKERICHCFS 283 (359)
T ss_dssp HHHHHCTTCHH---HHHHHHHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHC--CSS---HHHHHHHHHHHHHHHH
T ss_pred HHHhhCccchH---HHHHHHHHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcC--CCc---hHHHHHHHHHHHHHHH
Confidence 99999877542 2222 23488899998 9999999999998863 221 2122222222222222
Q ss_pred cCcccccccchHHHHHHHHhhhc-chhcchhhHHHHHHHhcCCCchHHHHHHHHHHH
Q 026637 151 RGELDVFGNRLKVLADCVADQAN-WYLECHLDLLILWALANTGEVSKAEDLLKGLKS 206 (235)
Q Consensus 151 ~G~~~~~g~rw~~la~~~~~~~~-~~~~~F~d~H~~~al~~ag~~~~~~~ll~~~~~ 206 (235)
.- .+++.-...+..-.. .+..+..=.....++...|+.+.+.+.++..-+
T Consensus 284 ~~------~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~ 334 (359)
T 3ieg_A 284 KD------EKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQE 334 (359)
T ss_dssp HT------TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred Hc------cCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 11 123333333222111 122122233446667788888877777665544
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.28 E-value=4.5e-11 Score=97.76 Aligned_cols=116 Identities=12% Similarity=0.016 Sum_probs=100.9
Q ss_pred hhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchh
Q 026637 5 DLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSS 84 (235)
Q Consensus 5 ~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~~a~~ 84 (235)
++++..+++++..+|.++.++..+|..+...|++++|++..+++++++|+++.++..+|.++...|++++|+..++++..
T Consensus 122 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 201 (258)
T 3uq3_A 122 EKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIE 201 (258)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 33444444444488889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchhh
Q 026637 85 TWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE 126 (235)
Q Consensus 85 ~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~~ 126 (235)
..|..+ ..+..+|.++...| ++++|+..|++.+...
T Consensus 202 ~~~~~~-----~~~~~l~~~~~~~g-~~~~A~~~~~~a~~~~ 237 (258)
T 3uq3_A 202 KDPNFV-----RAYIRKATAQIAVK-EYASALETLDAARTKD 237 (258)
T ss_dssp HCTTCH-----HHHHHHHHHHHHTT-CHHHHHHHHHHHHHHH
T ss_pred hCHHHH-----HHHHHHHHHHHHHh-hHHHHHHHHHHHHHhC
Confidence 987742 34556999999998 9999999999988763
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=99.27 E-value=5.6e-11 Score=93.58 Aligned_cols=103 Identities=13% Similarity=0.062 Sum_probs=93.3
Q ss_pred CCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhhccCCcchhHHH
Q 026637 18 NQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHN 97 (235)
Q Consensus 18 ~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~~a~~~w~~~~~~l~~H~ 97 (235)
.+.++..+..+|..+...|+|++|++.++++++++|+++.++..+|.++..+|++++|+..++++....|.. ...
T Consensus 7 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~ 81 (164)
T 3sz7_A 7 PTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKY-----SKA 81 (164)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-----HHH
T ss_pred hhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC-----HHH
Confidence 456778899999999999999999999999999999999999999999999999999999999999998774 245
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHhhchhh
Q 026637 98 WWHVALCYLEGHSPMRKVLEIYDNHIWKE 126 (235)
Q Consensus 98 ~WHlAL~~le~G~~~deAl~~yd~~i~~~ 126 (235)
+..+|.+++..| ++++|+..|++.+...
T Consensus 82 ~~~lg~~~~~~g-~~~~A~~~~~~al~~~ 109 (164)
T 3sz7_A 82 WSRLGLARFDMA-DYKGAKEAYEKGIEAE 109 (164)
T ss_dssp HHHHHHHHHHTT-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcc-CHHHHHHHHHHHHHhC
Confidence 556999999998 9999999999999874
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.27 E-value=7.8e-12 Score=121.71 Aligned_cols=118 Identities=12% Similarity=-0.045 Sum_probs=110.4
Q ss_pred CCChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 026637 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME 80 (235)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~ 80 (235)
+|+.++|+..+++++..+|+++.++..+|.++...|++++|++.+++|++++|+++.++.++|.++..+|++++ +..++
T Consensus 446 ~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~ 524 (681)
T 2pzi_A 446 LGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQ 524 (681)
T ss_dssp HTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHH
T ss_pred cCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999 99999
Q ss_pred HchhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026637 81 ECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 125 (235)
Q Consensus 81 ~a~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~ 125 (235)
++....|..+ ..+.++|.+++..| ++++|++.|++.+..
T Consensus 525 ~al~~~P~~~-----~a~~~lg~~~~~~g-~~~~A~~~~~~al~l 563 (681)
T 2pzi_A 525 TVWSTNDGVI-----SAAFGLARARSAEG-DRVGAVRTLDEVPPT 563 (681)
T ss_dssp HHHHHCTTCH-----HHHHHHHHHHHHTT-CHHHHHHHHHTSCTT
T ss_pred HHHHhCCchH-----HHHHHHHHHHHHcC-CHHHHHHHHHhhccc
Confidence 9999988743 24446999999998 999999999999876
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.27 E-value=3.6e-11 Score=99.76 Aligned_cols=118 Identities=10% Similarity=-0.007 Sum_probs=93.6
Q ss_pred CChhhHHHHHHhhcCCC----CCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 026637 2 GRPDLCFDIIHQVLPYN----QQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQ 77 (235)
Q Consensus 2 G~~~~al~~~~ral~~~----p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~ 77 (235)
|+.++++..+++++... |.++.++..+|..+...|++++|++.++++++++|+++.++..+|.++...|++++|+.
T Consensus 19 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~ 98 (275)
T 1xnf_A 19 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYE 98 (275)
T ss_dssp HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred chHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHH
Confidence 56777888888888763 45667888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHchhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026637 78 FMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 125 (235)
Q Consensus 78 ~l~~a~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~ 125 (235)
.++++....|..+ ..+..+|.+++..| ++++|+..|++.+..
T Consensus 99 ~~~~al~~~~~~~-----~~~~~la~~~~~~g-~~~~A~~~~~~a~~~ 140 (275)
T 1xnf_A 99 AFDSVLELDPTYN-----YAHLNRGIALYYGG-RDKLAQDDLLAFYQD 140 (275)
T ss_dssp HHHHHHHHCTTCT-----HHHHHHHHHHHHTT-CHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCcccc-----HHHHHHHHHHHHhc-cHHHHHHHHHHHHHh
Confidence 8888888776643 34445888888887 888888888888765
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=2.8e-11 Score=95.48 Aligned_cols=90 Identities=11% Similarity=0.021 Sum_probs=87.1
Q ss_pred CCChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 026637 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME 80 (235)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~ 80 (235)
.|+++++...+++++..+|+++.++..+|.++...|++++|++.+++|++++|+++.++..+|.++...|++++|+..++
T Consensus 34 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 113 (148)
T 2vgx_A 34 SGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLF 113 (148)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HchhhhccCC
Q 026637 81 ECSSTWSSCS 90 (235)
Q Consensus 81 ~a~~~w~~~~ 90 (235)
++....|..|
T Consensus 114 ~al~~~p~~~ 123 (148)
T 2vgx_A 114 LAQELIANXP 123 (148)
T ss_dssp HHHHHHTTCG
T ss_pred HHHHHCcCCC
Confidence 9999988755
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=99.26 E-value=2.7e-11 Score=93.76 Aligned_cols=90 Identities=11% Similarity=-0.019 Sum_probs=87.1
Q ss_pred CCChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 026637 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME 80 (235)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~ 80 (235)
.|++++++..+++++..+|+++.++..+|.++...|++++|+..+++|++++|+++.++..+|.++...|++++|+..++
T Consensus 31 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 110 (142)
T 2xcb_A 31 AGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFY 110 (142)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HchhhhccCC
Q 026637 81 ECSSTWSSCS 90 (235)
Q Consensus 81 ~a~~~w~~~~ 90 (235)
++....|..+
T Consensus 111 ~al~~~p~~~ 120 (142)
T 2xcb_A 111 SARALAAAQP 120 (142)
T ss_dssp HHHHHHHTCG
T ss_pred HHHHhCCCCc
Confidence 9999998754
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.26 E-value=1.4e-09 Score=90.37 Aligned_cols=191 Identities=13% Similarity=0.035 Sum_probs=110.6
Q ss_pred CCChhhHHHHHHhhcCCCCCCh----hHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 026637 1 MGRPDLCFDIIHQVLPYNQQED----FIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAV 76 (235)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~----~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi 76 (235)
+|+.++++..+++++. .|+++ .++..+|..+...|++++|++..+++++++|+++.++..+|.++..+|++++|+
T Consensus 50 ~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 128 (272)
T 3u4t_A 50 LAKYDLAQKDIETYFS-KVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAI 128 (272)
T ss_dssp TTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHH
T ss_pred HhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHH
Confidence 4677777777777777 33333 236777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHchhhhccCCcchhHHHHHHHH-HHHHhCCCCHHHHHHHHHhhchhhhcCCCCCchHhHhHHHHHHHHHHhcCccc
Q 026637 77 QFMEECSSTWSSCSSFMYTHNWWHVA-LCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNALGLLLRVYVRGELD 155 (235)
Q Consensus 77 ~~l~~a~~~w~~~~~~l~~H~~WHlA-L~~le~G~~~deAl~~yd~~i~~~~~~~~~~~~~~~~da~sLL~Rl~l~G~~~ 155 (235)
..++++....|..+ ..+..+| .++.. + ++++|++.|++.+... ++ ....+..-+.++..+ |...
T Consensus 129 ~~~~~al~~~~~~~-----~~~~~l~~~~~~~-~-~~~~A~~~~~~a~~~~--p~---~~~~~~~~~~~~~~~---~~~~ 193 (272)
T 3u4t_A 129 QYMEKQIRPTTTDP-----KVFYELGQAYYYN-K-EYVKADSSFVKVLELK--PN---IYIGYLWRARANAAQ---DPDT 193 (272)
T ss_dssp HHHGGGCCSSCCCH-----HHHHHHHHHHHHT-T-CHHHHHHHHHHHHHHS--TT---CHHHHHHHHHHHHHH---STTC
T ss_pred HHHHHHhhcCCCcH-----HHHHHHHHHHHHH-H-HHHHHHHHHHHHHHhC--cc---chHHHHHHHHHHHHc---Ccch
Confidence 77777777755532 3344577 55543 4 6777777777777652 21 122222222222222 3210
Q ss_pred cc---ccchHHHHHHHHhhhcchhcchhhHHH--HHHHhcCCCchHHHHHHHHHHHH
Q 026637 156 VF---GNRLKVLADCVADQANWYLECHLDLLI--LWALANTGEVSKAEDLLKGLKSR 207 (235)
Q Consensus 156 ~~---g~rw~~la~~~~~~~~~~~~~F~d~H~--~~al~~ag~~~~~~~ll~~~~~~ 207 (235)
.. -..++...+.....++.......+++. ...+...|+.+.+.+.++..-..
T Consensus 194 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 250 (272)
T 3u4t_A 194 KQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILAL 250 (272)
T ss_dssp SSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 01 124444444443222211111223443 44456678888777766655543
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=7.1e-11 Score=111.06 Aligned_cols=120 Identities=8% Similarity=-0.100 Sum_probs=112.0
Q ss_pred CCChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 026637 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME 80 (235)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~ 80 (235)
.|+.++|+...++++..+|+++.++..+|.++...|++++|++.++++++++|+++.++..+|.++..+|++++|+..++
T Consensus 36 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 115 (568)
T 2vsy_A 36 MGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYT 115 (568)
T ss_dssp HTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 38999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HchhhhccCCcchhHHHHHHHHHHHHhC---CCCHHHHHHHHHhhchhh
Q 026637 81 ECSSTWSSCSSFMYTHNWWHVALCYLEG---HSPMRKVLEIYDNHIWKE 126 (235)
Q Consensus 81 ~a~~~w~~~~~~l~~H~~WHlAL~~le~---G~~~deAl~~yd~~i~~~ 126 (235)
++....|..+ ..+..++.++... | ++++|++.|++.+...
T Consensus 116 ~al~~~p~~~-----~~~~~l~~~~~~~~~~g-~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 116 RAHQLLPEEP-----YITAQLLNWRRRLCDWR-ALDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHHHCTTCH-----HHHHHHHHHHHHTTCCT-THHHHHHHHHHHHHHT
T ss_pred HHHHhCCCCH-----HHHHHHHHHHHHhhccc-cHHHHHHHHHHHHhcC
Confidence 9999987742 3455699999999 8 9999999999998874
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.26 E-value=1.4e-10 Score=95.65 Aligned_cols=118 Identities=10% Similarity=0.028 Sum_probs=62.8
Q ss_pred CChhhHHHHHHhhcC--CCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 026637 2 GRPDLCFDIIHQVLP--YNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFM 79 (235)
Q Consensus 2 G~~~~al~~~~ral~--~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l 79 (235)
|+.++++..+++++. ..|.++.++..+|.++...|++++|++.++++++++|+++.++..++.++..+|++++|+..+
T Consensus 119 g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 198 (252)
T 2ho1_A 119 KRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYY 198 (252)
T ss_dssp TCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 455555555555555 445555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHchhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026637 80 EECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 125 (235)
Q Consensus 80 ~~a~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~ 125 (235)
++.....|.. ...++.++.++...| ++++|++.|++.+..
T Consensus 199 ~~~~~~~~~~-----~~~~~~~~~~~~~~g-~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 199 DLFAQGGGQN-----ARSLLLGIRLAKVFE-DRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHTTSCCC-----HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHH
T ss_pred HHHHHhCcCc-----HHHHHHHHHHHHHcc-CHHHHHHHHHHHHHH
Confidence 5555544332 123334555555554 555555555555443
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.26 E-value=4.9e-11 Score=87.35 Aligned_cols=102 Identities=10% Similarity=0.019 Sum_probs=73.1
Q ss_pred CCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhhccCCcchhHHH
Q 026637 18 NQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHN 97 (235)
Q Consensus 18 ~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~~a~~~w~~~~~~l~~H~ 97 (235)
.|.++..+..+|..+...|++++|+..+++++.++|+++.++..+|.++...|++++|+..++++....|.. ...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~-----~~~ 82 (131)
T 2vyi_A 8 DSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAY-----SKA 82 (131)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-----HHH
T ss_pred chhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccC-----HHH
Confidence 345566777777777777777777777777777777777777777777777777777777777777766553 234
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026637 98 WWHVALCYLEGHSPMRKVLEIYDNHIWK 125 (235)
Q Consensus 98 ~WHlAL~~le~G~~~deAl~~yd~~i~~ 125 (235)
+..+|.++...| ++++|+..|++.+..
T Consensus 83 ~~~~~~~~~~~~-~~~~A~~~~~~~~~~ 109 (131)
T 2vyi_A 83 YGRMGLALSSLN-KHVEAVAYYKKALEL 109 (131)
T ss_dssp HHHHHHHHHHTT-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CHHHHHHHHHHHHhc
Confidence 445777777776 777777777776653
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.25 E-value=8e-10 Score=100.51 Aligned_cols=203 Identities=10% Similarity=0.059 Sum_probs=142.0
Q ss_pred CCChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 026637 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME 80 (235)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~ 80 (235)
.|+.++++..+++++...|+++.++..+|.++...|++++|++.+++++.++|+++.++..+|.++...|++++|+..++
T Consensus 289 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 368 (537)
T 3fp2_A 289 KENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFN 368 (537)
T ss_dssp SSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 48899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HchhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchhhhcCCCCC-chHhHhHHHHHHHHHHhcCccccccc
Q 026637 81 ECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAV-HPEVYLNALGLLLRVYVRGELDVFGN 159 (235)
Q Consensus 81 ~a~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~~~~~~~~~-~~~~~~da~sLL~Rl~l~G~~~~~g~ 159 (235)
++....|..+ ..+..+|.++...| ++++|+..|++.+...-...... ....+..-+.++.++.-.+...--..
T Consensus 369 ~~~~~~~~~~-----~~~~~l~~~~~~~g-~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 442 (537)
T 3fp2_A 369 ETKLKFPTLP-----EVPTFFAEILTDRG-DFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEE 442 (537)
T ss_dssp HHHHHCTTCT-----HHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHH
T ss_pred HHHHhCCCCh-----HHHHHHHHHHHHhC-CHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHh
Confidence 9999987754 23445899999998 99999999999887641111100 01111222233333311100000002
Q ss_pred chHHHHHHHHhhhc-chhcchhhHHHHHHHhcCCCchHHHHHHHHHHHHhh
Q 026637 160 RLKVLADCVADQAN-WYLECHLDLLILWALANTGEVSKAEDLLKGLKSRHS 209 (235)
Q Consensus 160 rw~~la~~~~~~~~-~~~~~F~d~H~~~al~~ag~~~~~~~ll~~~~~~~~ 209 (235)
+++.-...+..-.. ++..+..-.....++...|+.+.+.+.++..-....
T Consensus 443 ~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 493 (537)
T 3fp2_A 443 KFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILAR 493 (537)
T ss_dssp HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 34433333332111 222122234456778888998888888777666543
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.25 E-value=8e-10 Score=94.19 Aligned_cols=124 Identities=12% Similarity=0.058 Sum_probs=109.0
Q ss_pred CCChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 026637 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME 80 (235)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~ 80 (235)
.|+.++++..+++++..+|+++.++..+|..+...|++++|+..++++++++|+++.++..+|.++...|++++|+..++
T Consensus 16 ~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 95 (359)
T 3ieg_A 16 AGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFK 95 (359)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcCChHHHHHHHH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Hchhhhc---cCCcchh-------HHHHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026637 81 ECSSTWS---SCSSFMY-------THNWWHVALCYLEGHSPMRKVLEIYDNHIWK 125 (235)
Q Consensus 81 ~a~~~w~---~~~~~l~-------~H~~WHlAL~~le~G~~~deAl~~yd~~i~~ 125 (235)
++....| ..+.... ...++.+|..+...| ++++|++.|++.+..
T Consensus 96 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~A~~~~~~~~~~ 149 (359)
T 3ieg_A 96 KVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGA-DYTAAITFLDKILEV 149 (359)
T ss_dssp HHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHH
T ss_pred HHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHh
Confidence 9998877 4321100 001233488899998 999999999999876
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.25 E-value=2.4e-10 Score=111.25 Aligned_cols=118 Identities=10% Similarity=-0.028 Sum_probs=109.2
Q ss_pred CCChhhHHHHHHhhc--------CCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH
Q 026637 1 MGRPDLCFDIIHQVL--------PYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCF 72 (235)
Q Consensus 1 ~G~~~~al~~~~ral--------~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~ 72 (235)
.|+.++++..+++++ ..+|++..++..+|.++.+.|++++|++.++++++++|+++.++..+|.++..+|++
T Consensus 404 ~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~ 483 (681)
T 2pzi_A 404 LSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTGDY 483 (681)
T ss_dssp TCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCH
T ss_pred ccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcCCH
Confidence 478999999999999 889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHchhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026637 73 KEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 125 (235)
Q Consensus 73 ~egi~~l~~a~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~ 125 (235)
++|+..++++....|..+ ..+..+|.++...| ++++ ++.|++.+..
T Consensus 484 ~~A~~~~~~al~l~P~~~-----~~~~~lg~~~~~~g-~~~~-~~~~~~al~~ 529 (681)
T 2pzi_A 484 DSATKHFTEVLDTFPGEL-----APKLALAATAELAG-NTDE-HKFYQTVWST 529 (681)
T ss_dssp HHHHHHHHHHHHHSTTCS-----HHHHHHHHHHHHHT-CCCT-TCHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCh-----HHHHHHHHHHHHcC-ChHH-HHHHHHHHHh
Confidence 999999999999998854 23345999999998 9999 9999999987
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.25 E-value=5.9e-11 Score=100.43 Aligned_cols=119 Identities=12% Similarity=0.129 Sum_probs=110.3
Q ss_pred CChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 026637 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEE 81 (235)
Q Consensus 2 G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~~ 81 (235)
|+.++++..+++++...|+++.++..+|.++...|++++|++..+++++++|+++.++..+|.++...|++++|+..+++
T Consensus 152 ~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 231 (327)
T 3cv0_A 152 NEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNR 231 (327)
T ss_dssp HHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchhh
Q 026637 82 CSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE 126 (235)
Q Consensus 82 a~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~~ 126 (235)
+....|.. ...+..+|.+++..| ++++|++.|++.+...
T Consensus 232 a~~~~~~~-----~~~~~~l~~~~~~~g-~~~~A~~~~~~a~~~~ 270 (327)
T 3cv0_A 232 ALDINPGY-----VRVMYNMAVSYSNMS-QYDLAAKQLVRAIYMQ 270 (327)
T ss_dssp HHHHCTTC-----HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHH
T ss_pred HHHcCCCC-----HHHHHHHHHHHHHhc-cHHHHHHHHHHHHHhC
Confidence 99988763 245667999999998 9999999999988764
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.25 E-value=4e-11 Score=95.85 Aligned_cols=115 Identities=15% Similarity=0.017 Sum_probs=60.6
Q ss_pred CChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHH
Q 026637 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQ-HDCCFKEAVQFME 80 (235)
Q Consensus 2 G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~-~~Gr~~egi~~l~ 80 (235)
|+.++++..+++++..+|+++.++..+|.++...|++++|++..+++++++| ++.....++.+.. ..++..+++..++
T Consensus 20 g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~~~~~~a~~~~~ 98 (176)
T 2r5s_A 20 GEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAKLELHQQAAESPELKRLE 98 (176)
T ss_dssp TCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHHHHHHhhcccchHHHHHH
Confidence 6666777777777777777777777777777777776666665555555555 4444333333321 1122233445555
Q ss_pred HchhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhc
Q 026637 81 ECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHI 123 (235)
Q Consensus 81 ~a~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i 123 (235)
++....|..+ ..++ .+|.++...| ++++|++.|++.+
T Consensus 99 ~al~~~P~~~---~~~~--~la~~~~~~g-~~~~A~~~~~~~l 135 (176)
T 2r5s_A 99 QELAANPDNF---ELAC--ELAVQYNQVG-RDEEALELLWNIL 135 (176)
T ss_dssp HHHHHSTTCH---HHHH--HHHHHHHHTT-CHHHHHHHHHHHH
T ss_pred HHHHhCCCCH---HHHH--HHHHHHHHcc-cHHHHHHHHHHHH
Confidence 5544444421 1122 2455555544 4555555555444
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=99.25 E-value=1.4e-10 Score=87.19 Aligned_cols=104 Identities=7% Similarity=-0.065 Sum_probs=94.0
Q ss_pred CCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhhccCCcchhHH
Q 026637 17 YNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTH 96 (235)
Q Consensus 17 ~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~~a~~~w~~~~~~l~~H 96 (235)
..|.++..+..+|..+...|++++|+..++++++++|+++.++..+|.++..+|++++|+..++++....|..+ .
T Consensus 4 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~-----~ 78 (137)
T 3q49_B 4 MKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSV-----K 78 (137)
T ss_dssp --CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-----H
T ss_pred CccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhH-----H
Confidence 45778899999999999999999999999999999999999999999999999999999999999999987742 3
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHhhchhh
Q 026637 97 NWWHVALCYLEGHSPMRKVLEIYDNHIWKE 126 (235)
Q Consensus 97 ~~WHlAL~~le~G~~~deAl~~yd~~i~~~ 126 (235)
.+..+|.+++..| ++++|+..|.+.+...
T Consensus 79 ~~~~l~~~~~~~~-~~~~A~~~~~~a~~~~ 107 (137)
T 3q49_B 79 AHFFLGQCQLEME-SYDEAIANLQRAYSLA 107 (137)
T ss_dssp HHHHHHHHHHHTT-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh-hHHHHHHHHHHHHHHC
Confidence 4556999999998 9999999999998764
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.25 E-value=6.5e-11 Score=84.82 Aligned_cols=104 Identities=9% Similarity=-0.049 Sum_probs=93.9
Q ss_pred CCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhhccCCcchhHHH
Q 026637 18 NQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHN 97 (235)
Q Consensus 18 ~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~~a~~~w~~~~~~l~~H~ 97 (235)
+|+++.++..+|..+...|++++|+..++++++++|+++.++..+|.++..+|++++|+..++++....|... . ...
T Consensus 2 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~-~--~~~ 78 (112)
T 2kck_A 2 VDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEY-N--KDV 78 (112)
T ss_dssp CCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTT-C--HHH
T ss_pred CCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccc-h--HHH
Confidence 6888888899999999999999999999999999999999999999999999999999999999999887610 1 245
Q ss_pred HHHHHHHHHhC-CCCHHHHHHHHHhhchh
Q 026637 98 WWHVALCYLEG-HSPMRKVLEIYDNHIWK 125 (235)
Q Consensus 98 ~WHlAL~~le~-G~~~deAl~~yd~~i~~ 125 (235)
+..+|.+++.. | ++++|++.+++.+..
T Consensus 79 ~~~l~~~~~~~~~-~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 79 WAAKADALRYIEG-KEVEAEIAEARAKLE 106 (112)
T ss_dssp HHHHHHHHTTCSS-CSHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHhC-CHHHHHHHHHHHhhc
Confidence 56799999999 9 999999999998876
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.24 E-value=5.1e-11 Score=103.24 Aligned_cols=119 Identities=10% Similarity=0.047 Sum_probs=109.5
Q ss_pred CChhhHHHHHHhhcCCCCC--ChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 026637 2 GRPDLCFDIIHQVLPYNQQ--EDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFM 79 (235)
Q Consensus 2 G~~~~al~~~~ral~~~p~--~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l 79 (235)
|+.++++..+++++...|+ ++.++..+|.++...|++++|++..++++.++|+++.++..+|.++...|++++|+..+
T Consensus 195 ~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 274 (368)
T 1fch_A 195 SLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAY 274 (368)
T ss_dssp HHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 6788999999999999999 89999999999999999999999999999999999999999999999999999999999
Q ss_pred HHchhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchhh
Q 026637 80 EECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE 126 (235)
Q Consensus 80 ~~a~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~~ 126 (235)
+++....|..+ ..+..+|.+++..| ++++|+..|++.+...
T Consensus 275 ~~al~~~~~~~-----~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~ 315 (368)
T 1fch_A 275 RRALELQPGYI-----RSRYNLGISCINLG-AHREAVEHFLEALNMQ 315 (368)
T ss_dssp HHHHHHCTTCH-----HHHHHHHHHHHHHT-CHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCcH-----HHHHHHHHHHHHCC-CHHHHHHHHHHHHHhC
Confidence 99999887642 34456999999998 9999999999988763
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.24 E-value=1.4e-11 Score=92.37 Aligned_cols=90 Identities=13% Similarity=0.090 Sum_probs=82.8
Q ss_pred CCChhhHHHHHHhhcCC---CCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 026637 1 MGRPDLCFDIIHQVLPY---NQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQ 77 (235)
Q Consensus 1 ~G~~~~al~~~~ral~~---~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~ 77 (235)
+|+.++++...++++.. +|+++.++..+|.++...|++++|++.++++++++|+++.++..+|.++...|++++|+.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 58999999999999999 688999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHchhhhccCC
Q 026637 78 FMEECSSTWSSCS 90 (235)
Q Consensus 78 ~l~~a~~~w~~~~ 90 (235)
.++++....|..+
T Consensus 83 ~~~~al~~~p~~~ 95 (117)
T 3k9i_A 83 LLLKIIAETSDDE 95 (117)
T ss_dssp HHHHHHHHHCCCH
T ss_pred HHHHHHHhCCCcH
Confidence 9999999988854
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.24 E-value=9.2e-11 Score=93.95 Aligned_cols=120 Identities=8% Similarity=-0.011 Sum_probs=109.9
Q ss_pred CCChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHh-CCHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 026637 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLEL-GQMSDAEEAAKKGLK--INKHDCWSQHALCHVLQHDCCFKEAVQ 77 (235)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~-g~~~~Ae~~arrAL~--L~P~dawA~halahvl~~~Gr~~egi~ 77 (235)
.|+.++++...++++...|+++.++..+|..+... |++++|+...+++++ .+|+++.++..+|.++...|++++|+.
T Consensus 55 ~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 134 (225)
T 2vq2_A 55 LKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEA 134 (225)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHH
Confidence 48999999999999999999999999999999999 999999999999999 778889999999999999999999999
Q ss_pred HHHHchhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchhh
Q 026637 78 FMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE 126 (235)
Q Consensus 78 ~l~~a~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~~ 126 (235)
.+++.....|.. ...+..+|.+++..| ++++|++.|++.+...
T Consensus 135 ~~~~~~~~~~~~-----~~~~~~la~~~~~~~-~~~~A~~~~~~~~~~~ 177 (225)
T 2vq2_A 135 YLKRSLAAQPQF-----PPAFKELARTKMLAG-QLGDADYYFKKYQSRV 177 (225)
T ss_dssp HHHHHHHHSTTC-----HHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCC-----chHHHHHHHHHHHcC-CHHHHHHHHHHHHHhC
Confidence 999999987763 245567999999998 9999999999988763
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=4.6e-11 Score=94.08 Aligned_cols=90 Identities=10% Similarity=0.096 Sum_probs=85.1
Q ss_pred CCChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHH-HH
Q 026637 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQ-FM 79 (235)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~-~l 79 (235)
+|+.++|+..+++++..+|+++.++..+|.++...|++++|+..++++++++|+++.++..+|.++..+|++++++. ++
T Consensus 44 ~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~ 123 (150)
T 4ga2_A 44 AKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWV 123 (150)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999987665 67
Q ss_pred HHchhhhccCC
Q 026637 80 EECSSTWSSCS 90 (235)
Q Consensus 80 ~~a~~~w~~~~ 90 (235)
+++....|..+
T Consensus 124 ~~al~l~P~~~ 134 (150)
T 4ga2_A 124 ERAAKLFPGSP 134 (150)
T ss_dssp HHHHHHSTTCH
T ss_pred HHHHHhCcCCH
Confidence 99999998854
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.23 E-value=9e-11 Score=109.17 Aligned_cols=117 Identities=13% Similarity=0.062 Sum_probs=76.3
Q ss_pred CCh-hhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc---------CC
Q 026637 2 GRP-DLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHD---------CC 71 (235)
Q Consensus 2 G~~-~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~---------Gr 71 (235)
|+. ++|+..+++++..+|+++.++..+|.++...|++++|++.+++|++++|+ +.++..+|.++... |+
T Consensus 116 g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~lg~~~~~~~~~~~~~~~g~ 194 (474)
T 4abn_A 116 PDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKN-KVSLQNLSMVLRQLQTDSGDEHSRH 194 (474)
T ss_dssp SSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCC-HHHHHHHHHHHTTCCCSCHHHHHHH
T ss_pred cccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-HHHHHHHHHHHHHhccCChhhhhhh
Confidence 566 66666666666666666666666666666666666666666666666666 56666666666666 66
Q ss_pred HHHHHHHHHHchhhhccCCcchhHHHHHHHHHHHHhC--------CCCHHHHHHHHHhhchh
Q 026637 72 FKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEG--------HSPMRKVLEIYDNHIWK 125 (235)
Q Consensus 72 ~~egi~~l~~a~~~w~~~~~~l~~H~~WHlAL~~le~--------G~~~deAl~~yd~~i~~ 125 (235)
+++|+..++++....|..+ ..|..+|.+++.. | ++++|++.|++.+..
T Consensus 195 ~~~A~~~~~~al~~~p~~~-----~~~~~lg~~~~~~~~~~~~~~g-~~~~A~~~~~~al~~ 250 (474)
T 4abn_A 195 VMDSVRQAKLAVQMDVLDG-----RSWYILGNAYLSLYFNTGQNPK-ISQQALSAYAQAEKV 250 (474)
T ss_dssp HHHHHHHHHHHHHHCTTCH-----HHHHHHHHHHHHHHHHTTCCHH-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHHHHhhccccc-hHHHHHHHHHHHHHh
Confidence 6666666666666665532 2333466666665 6 666666666666654
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.23 E-value=1.6e-10 Score=85.51 Aligned_cols=103 Identities=14% Similarity=0.097 Sum_probs=85.7
Q ss_pred CCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhhccCCcchhHH
Q 026637 17 YNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTH 96 (235)
Q Consensus 17 ~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~~a~~~w~~~~~~l~~H 96 (235)
..|..+..+..+|..+...|++++|++..+++++++|+++.++..+|.++..+|++++|+..++++....|..+ .
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~-----~ 85 (133)
T 2lni_A 11 MNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFI-----K 85 (133)
T ss_dssp SSSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCH-----H
T ss_pred cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCch-----H
Confidence 45667788888888888999999999999999999999999999999999999999999999988888876632 3
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026637 97 NWWHVALCYLEGHSPMRKVLEIYDNHIWK 125 (235)
Q Consensus 97 ~~WHlAL~~le~G~~~deAl~~yd~~i~~ 125 (235)
.+..+|.+++..| ++++|+..|++.+..
T Consensus 86 ~~~~la~~~~~~~-~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 86 GYTRKAAALEAMK-DYTKAMDVYQKALDL 113 (133)
T ss_dssp HHHHHHHHHHHTT-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh-hHHHHHHHHHHHHHh
Confidence 4556888888887 899999998887664
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.23 E-value=9.4e-11 Score=99.18 Aligned_cols=124 Identities=10% Similarity=0.023 Sum_probs=111.2
Q ss_pred CCChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 026637 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME 80 (235)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~ 80 (235)
.|+.++++..+++++...|+++.++..+|.++...|++++|++.++++++++|+++.++..++.++...|++++|+..++
T Consensus 185 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 264 (327)
T 3cv0_A 185 SNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLV 264 (327)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HchhhhccCCcch-------hHHHHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026637 81 ECSSTWSSCSSFM-------YTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 125 (235)
Q Consensus 81 ~a~~~w~~~~~~l-------~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~ 125 (235)
++....|..+... ....+..++.++...| ++++|..+|++.+..
T Consensus 265 ~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~l~~ 315 (327)
T 3cv0_A 265 RAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMN-RPDLVELTYAQNVEP 315 (327)
T ss_dssp HHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTT-CHHHHHHHTTCCSHH
T ss_pred HHHHhCCccccccccchhhcCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHh
Confidence 9998887721110 1235567999999998 999999999887776
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.22 E-value=6.9e-11 Score=90.10 Aligned_cols=89 Identities=10% Similarity=-0.019 Sum_probs=82.5
Q ss_pred CCChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 026637 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME 80 (235)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~ 80 (235)
.|+.++++..+++++..+|+++.++..+|.++...|++++|++.+++|++++|+++.++..+|.++...|++++|+..++
T Consensus 30 ~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~ 109 (121)
T 1hxi_A 30 LANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLR 109 (121)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HchhhhccC
Q 026637 81 ECSSTWSSC 89 (235)
Q Consensus 81 ~a~~~w~~~ 89 (235)
++....|..
T Consensus 110 ~al~~~P~~ 118 (121)
T 1hxi_A 110 AWLLSQPQY 118 (121)
T ss_dssp HHHC-----
T ss_pred HHHHhCcCC
Confidence 999887763
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=99.22 E-value=1.4e-10 Score=91.34 Aligned_cols=90 Identities=14% Similarity=0.026 Sum_probs=87.5
Q ss_pred CCChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 026637 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME 80 (235)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~ 80 (235)
.|++++++..+++++..+|+++.++..+|.++...|++++|+..++++++++|+++.++..+|.++..+|++++|+..++
T Consensus 24 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 103 (164)
T 3sz7_A 24 RKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARFDMADYKGAKEAYE 103 (164)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HchhhhccCC
Q 026637 81 ECSSTWSSCS 90 (235)
Q Consensus 81 ~a~~~w~~~~ 90 (235)
++....|..+
T Consensus 104 ~al~~~p~~~ 113 (164)
T 3sz7_A 104 KGIEAEGNGG 113 (164)
T ss_dssp HHHHHHSSSC
T ss_pred HHHHhCCCch
Confidence 9999998865
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.22 E-value=1.5e-10 Score=96.25 Aligned_cols=118 Identities=8% Similarity=0.060 Sum_probs=107.1
Q ss_pred CCChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHH----HHHHHHHHHHHcCCHHHHH
Q 026637 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCW----SQHALCHVLQHDCCFKEAV 76 (235)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~daw----A~halahvl~~~Gr~~egi 76 (235)
.|+.++++...++++..+|+++.++..+|.++...|++++|++.++++++ .|+++. ++..+|.++...|++++|+
T Consensus 16 ~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg~~~~~~~~~~~A~ 94 (272)
T 3u4t_A 16 NNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYYGKILMKKGQDSLAI 94 (272)
T ss_dssp TTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred hcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHHHHHHHcccHHHHH
Confidence 48999999999999999999999999999999999999999999999999 555544 4899999999999999999
Q ss_pred HHHHHchhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026637 77 QFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 125 (235)
Q Consensus 77 ~~l~~a~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~ 125 (235)
..++++....|..+ ..+..+|.+++..| ++++|+..|++.+..
T Consensus 95 ~~~~~a~~~~~~~~-----~~~~~l~~~~~~~~-~~~~A~~~~~~al~~ 137 (272)
T 3u4t_A 95 QQYQAAVDRDTTRL-----DMYGQIGSYFYNKG-NFPLAIQYMEKQIRP 137 (272)
T ss_dssp HHHHHHHHHSTTCT-----HHHHHHHHHHHHTT-CHHHHHHHHGGGCCS
T ss_pred HHHHHHHhcCcccH-----HHHHHHHHHHHHcc-CHHHHHHHHHHHhhc
Confidence 99999999988754 34556999999998 999999999999876
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.22 E-value=1.2e-10 Score=96.61 Aligned_cols=118 Identities=17% Similarity=0.131 Sum_probs=105.5
Q ss_pred CCChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 026637 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME 80 (235)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~ 80 (235)
.|+.++++..+++++..+|+++.++..+|.++...|++++|++.++++++++|+++.++..+|.++...|++++|+..++
T Consensus 56 ~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 135 (275)
T 1xnf_A 56 LGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLL 135 (275)
T ss_dssp TTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HchhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026637 81 ECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 125 (235)
Q Consensus 81 ~a~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~ 125 (235)
++....|..+ ....+ .+++ +..| ++++|+..|++.+..
T Consensus 136 ~a~~~~~~~~---~~~~~--~~~~-~~~~-~~~~A~~~~~~~~~~ 173 (275)
T 1xnf_A 136 AFYQDDPNDP---FRSLW--LYLA-EQKL-DEKQAKEVLKQHFEK 173 (275)
T ss_dssp HHHHHCTTCH---HHHHH--HHHH-HHHH-CHHHHHHHHHHHHHH
T ss_pred HHHHhCCCCh---HHHHH--HHHH-HHhc-CHHHHHHHHHHHHhc
Confidence 9999887743 12232 4444 3557 899999999998876
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.21 E-value=1.1e-10 Score=87.63 Aligned_cols=86 Identities=7% Similarity=-0.014 Sum_probs=84.2
Q ss_pred CCChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 026637 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME 80 (235)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~ 80 (235)
.|+.++++...++++..+|+++.++..+|.++...|++++|++.++++++++|+++.++..+|.++...|++++|+..++
T Consensus 17 ~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~ 96 (126)
T 3upv_A 17 KSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLD 96 (126)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhCHHHHHHHHH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Hchhhh
Q 026637 81 ECSSTW 86 (235)
Q Consensus 81 ~a~~~w 86 (235)
++....
T Consensus 97 ~al~~~ 102 (126)
T 3upv_A 97 AARTKD 102 (126)
T ss_dssp HHHHHH
T ss_pred HHHHhC
Confidence 999888
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.20 E-value=1.4e-09 Score=96.81 Aligned_cols=192 Identities=11% Similarity=0.001 Sum_probs=136.9
Q ss_pred CCChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 026637 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME 80 (235)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~ 80 (235)
.|+.++++..+++++...|+++.++..+|.++...|++++|+..++++++++|+++.++..++.++..+|++++|+..++
T Consensus 39 ~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 118 (450)
T 2y4t_A 39 AGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFK 118 (450)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HchhhhccCC---cchh-------HHHHHHHHHHHHhCCCCHHHHHHHHHhhchhhhcCCCCCchHhHhHHHHHHHHHHh
Q 026637 81 ECSSTWSSCS---SFMY-------THNWWHVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNALGLLLRVYV 150 (235)
Q Consensus 81 ~a~~~w~~~~---~~l~-------~H~~WHlAL~~le~G~~~deAl~~yd~~i~~~~~~~~~~~~~~~~da~sLL~Rl~l 150 (235)
+.....|..+ .... ....+.+|..++..| ++++|+..|++.+... +. ....+..-+.++.+
T Consensus 119 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~A~~~~~~~~~~~--~~---~~~~~~~l~~~~~~--- 189 (450)
T 2y4t_A 119 KVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSG-DYTAAIAFLDKILEVC--VW---DAELRELRAECFIK--- 189 (450)
T ss_dssp HHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHC--TT---CHHHHHHHHHHHHH---
T ss_pred HHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhC--CC---ChHHHHHHHHHHHH---
Confidence 9988876532 1100 001445688899998 9999999999988762 22 12222232222222
Q ss_pred cCcccccccchHHHHHHHHhhhcchhcchhhHHHHHHHhcCCCchHHHHHHHHHHHH
Q 026637 151 RGELDVFGNRLKVLADCVADQANWYLECHLDLLILWALANTGEVSKAEDLLKGLKSR 207 (235)
Q Consensus 151 ~G~~~~~g~rw~~la~~~~~~~~~~~~~F~d~H~~~al~~ag~~~~~~~ll~~~~~~ 207 (235)
.|. ...-.+.+-......+.. . ..-......+...|+.+.+.+.++.+...
T Consensus 190 ~g~---~~~A~~~~~~~~~~~~~~-~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 240 (450)
T 2y4t_A 190 EGE---PRKAISDLKAASKLKNDN-T--EAFYKISTLYYQLGDHELSLSEVRECLKL 240 (450)
T ss_dssp TTC---GGGGHHHHHHHHHHHCSC-H--HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCC---HHHHHHHHHHHHHhCCCC-H--HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 232 122222222222221111 1 12223355677788888888777766543
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.20 E-value=7.9e-11 Score=109.58 Aligned_cols=115 Identities=10% Similarity=0.004 Sum_probs=93.0
Q ss_pred hhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCH-HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc
Q 026637 4 PDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQM-SDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEEC 82 (235)
Q Consensus 4 ~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~-~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~~a 82 (235)
.++++..++++....|+++.++..+|..+...|+| ++|++.+++|++++|+++.++..+|.++..+|++++|+..++++
T Consensus 84 ~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 163 (474)
T 4abn_A 84 MEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGA 163 (474)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 45667777777778888888888888888888888 88888888888888888888888888888888888888888888
Q ss_pred hhhhccCCcchhHHHHHHHHHHHHhC---------CCCHHHHHHHHHhhchh
Q 026637 83 SSTWSSCSSFMYTHNWWHVALCYLEG---------HSPMRKVLEIYDNHIWK 125 (235)
Q Consensus 83 ~~~w~~~~~~l~~H~~WHlAL~~le~---------G~~~deAl~~yd~~i~~ 125 (235)
....|+ + ..+..+|.++... | ++++|++.|++.+..
T Consensus 164 l~~~p~-~-----~~~~~lg~~~~~~~~~~~~~~~g-~~~~A~~~~~~al~~ 208 (474)
T 4abn_A 164 LTHCKN-K-----VSLQNLSMVLRQLQTDSGDEHSR-HVMDSVRQAKLAVQM 208 (474)
T ss_dssp HTTCCC-H-----HHHHHHHHHHTTCCCSCHHHHHH-HHHHHHHHHHHHHHH
T ss_pred HhhCCC-H-----HHHHHHHHHHHHhccCChhhhhh-hHHHHHHHHHHHHHh
Confidence 888755 2 2334588888887 8 888888888887654
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.20 E-value=1.4e-10 Score=97.64 Aligned_cols=122 Identities=10% Similarity=0.004 Sum_probs=107.1
Q ss_pred CCChhhHHHHHHhhcCCCCCC---hhHHHHHHHHHHH--------hCCHHHHHHHHHHHHhhCCCCHHHH----------
Q 026637 1 MGRPDLCFDIIHQVLPYNQQE---DFIFGILAFSLLE--------LGQMSDAEEAAKKGLKINKHDCWSQ---------- 59 (235)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~---~~~~g~~Af~L~e--------~g~~~~Ae~~arrAL~L~P~dawA~---------- 59 (235)
+|+.++|+...++++..+|++ +.++..+|.++.. .|++++|++..+++++++|+++.+.
T Consensus 65 ~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~ 144 (261)
T 3qky_A 65 NKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELR 144 (261)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHH
T ss_pred hCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHH
Confidence 589999999999999988754 5789999999999 9999999999999999999998887
Q ss_pred -------HHHHHHHHHcCCHHHHHHHHHHchhhhccCCcchhHHHHHHHHHHHHhC----------CCCHHHHHHHHHhh
Q 026637 60 -------HALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEG----------HSPMRKVLEIYDNH 122 (235)
Q Consensus 60 -------halahvl~~~Gr~~egi~~l~~a~~~w~~~~~~l~~H~~WHlAL~~le~----------G~~~deAl~~yd~~ 122 (235)
..+|.++..+|++++|+..+++.....|..+.. ...+..+|.++... | ++++|+..|++.
T Consensus 145 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~--~~a~~~l~~~~~~~g~~~~~~~~~~-~~~~A~~~~~~~ 221 (261)
T 3qky_A 145 AKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWA--DDALVGAMRAYIAYAEQSVRARQPE-RYRRAVELYERL 221 (261)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTH--HHHHHHHHHHHHHHHHTSCGGGHHH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchH--HHHHHHHHHHHHHhcccchhhcccc-hHHHHHHHHHHH
Confidence 777999999999999999999999999885422 23445688888766 7 899999999999
Q ss_pred chh
Q 026637 123 IWK 125 (235)
Q Consensus 123 i~~ 125 (235)
+..
T Consensus 222 ~~~ 224 (261)
T 3qky_A 222 LQI 224 (261)
T ss_dssp HHH
T ss_pred HHH
Confidence 887
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.20 E-value=1.3e-10 Score=100.89 Aligned_cols=118 Identities=14% Similarity=0.031 Sum_probs=69.1
Q ss_pred CChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 026637 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEE 81 (235)
Q Consensus 2 G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~~ 81 (235)
|+.++|+...++++..+|+++.++..+|-++...|++++|++..+++++++|++.......+..+..+|+.+++++.+++
T Consensus 131 g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~ 210 (287)
T 3qou_A 131 SNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELLXQAADTPEIQQLQQ 210 (287)
T ss_dssp TCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHHHhhcccCccHHHHHH
Confidence 45555555555555555555555555555555555555555555555555554444444444445555555555555555
Q ss_pred chhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026637 82 CSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 125 (235)
Q Consensus 82 a~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~ 125 (235)
+....|+.+ . .+..+|..++..| ++++|++.|.+.+..
T Consensus 211 al~~~P~~~---~--~~~~la~~l~~~g-~~~~A~~~l~~~l~~ 248 (287)
T 3qou_A 211 QVAENPEDA---A--LATQLALQLHQVG-RNEEALELLFGHLRX 248 (287)
T ss_dssp HHHHCTTCH---H--HHHHHHHHHHHTT-CHHHHHHHHHHHHHH
T ss_pred HHhcCCccH---H--HHHHHHHHHHHcc-cHHHHHHHHHHHHhc
Confidence 555555532 2 3335888888887 888888888888876
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.19 E-value=2e-10 Score=93.87 Aligned_cols=119 Identities=12% Similarity=0.093 Sum_probs=108.5
Q ss_pred CCChhhHHHHHHhhcCCCCCC-------hhHHHHHHHHHHHhCCHHHHHHHHHHHHh-----------------------
Q 026637 1 MGRPDLCFDIIHQVLPYNQQE-------DFIFGILAFSLLELGQMSDAEEAAKKGLK----------------------- 50 (235)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~-------~~~~g~~Af~L~e~g~~~~Ae~~arrAL~----------------------- 50 (235)
+|+.++++..+++++...|.+ +.++..+|.++...|++++|.+..++++.
T Consensus 51 ~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~ 130 (258)
T 3uq3_A 51 KGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEA 130 (258)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHH
Confidence 589999999999999988766 78999999999999999999999999999
Q ss_pred ---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026637 51 ---INKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 125 (235)
Q Consensus 51 ---L~P~dawA~halahvl~~~Gr~~egi~~l~~a~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~ 125 (235)
++|+++.++..+|.++...|++++|+..++++....|..+ ..+..+|.+++..| ++++|+..|++.+..
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~-----~~~~~l~~~~~~~~-~~~~A~~~~~~al~~ 202 (258)
T 3uq3_A 131 EAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDA-----RGYSNRAAALAKLM-SFPEAIADCNKAIEK 202 (258)
T ss_dssp HHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-----HHHHHHHHHHHHTT-CHHHHHHHHHHHHHH
T ss_pred HHHcCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccH-----HHHHHHHHHHHHhC-CHHHHHHHHHHHHHh
Confidence 7888999999999999999999999999999999987743 34556999999998 999999999999876
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.19 E-value=1.7e-10 Score=92.08 Aligned_cols=120 Identities=9% Similarity=-0.021 Sum_probs=86.5
Q ss_pred CCChhhHHHHHHhhcCCCCCChhHHHHHHHH-HHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 026637 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFS-LLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFM 79 (235)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~~g~~Af~-L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l 79 (235)
.|+.++++..+++++...| ++..+...+.. +.+.+...+|++..+++++++|+++.++..+|.++..+|++++|+..+
T Consensus 53 ~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~ 131 (176)
T 2r5s_A 53 TKQFELAQELLATIPLEYQ-DNSYKSLIAKLELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELL 131 (176)
T ss_dssp TTCHHHHHHHHTTCCGGGC-CHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCCHHHHHHHHHHhhhccC-ChHHHHHHHHHHHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHH
Confidence 4778888888888888888 77666655533 333344455788888888888888888888888888888888888888
Q ss_pred HHchhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026637 80 EECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 125 (235)
Q Consensus 80 ~~a~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~ 125 (235)
++..+..|.... ...+..++.++...| ++++|+..|++.+..
T Consensus 132 ~~~l~~~p~~~~---~~a~~~l~~~~~~~g-~~~~A~~~y~~al~~ 173 (176)
T 2r5s_A 132 WNILKVNLGAQD---GEVKKTFMDILSALG-QGNAIASKYRRQLYS 173 (176)
T ss_dssp HHHHTTCTTTTT---THHHHHHHHHHHHHC-SSCHHHHHHHHHHHH
T ss_pred HHHHHhCcccCh---HHHHHHHHHHHHHhC-CCCcHHHHHHHHHHH
Confidence 888877765321 123445777777777 788888888776653
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.19 E-value=1.4e-09 Score=100.70 Aligned_cols=118 Identities=8% Similarity=-0.013 Sum_probs=69.4
Q ss_pred CChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 026637 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEE 81 (235)
Q Consensus 2 G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~~ 81 (235)
|+.++++..+++++...|.+...+..++.++...|++++|++.++++++++|+++.++..++.++...|++++|+..+++
T Consensus 387 g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 466 (597)
T 2xpi_A 387 NKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQS 466 (597)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 55566666666666656666666666666666666666666666666666666666666666666666666666666666
Q ss_pred chhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026637 82 CSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 125 (235)
Q Consensus 82 a~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~ 125 (235)
.....|..+ ..+..++..+...| ++++|+++|++.+..
T Consensus 467 ~~~~~~~~~-----~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~ 504 (597)
T 2xpi_A 467 SYALFQYDP-----LLLNELGVVAFNKS-DMQTAINHFQNALLL 504 (597)
T ss_dssp HHHHCCCCH-----HHHHHHHHHHHHTT-CHHHHHHHHHHHHHH
T ss_pred HHHhCCCCh-----HHHHHHHHHHHHhC-CHHHHHHHHHHHHHh
Confidence 655554422 12333555665655 666666666665544
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.18 E-value=3.3e-10 Score=93.37 Aligned_cols=124 Identities=14% Similarity=0.166 Sum_probs=105.6
Q ss_pred CCChhhHHHHHHhhcCC--------CCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhh--------CCCCHHHHHHHHH
Q 026637 1 MGRPDLCFDIIHQVLPY--------NQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKI--------NKHDCWSQHALCH 64 (235)
Q Consensus 1 ~G~~~~al~~~~ral~~--------~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L--------~P~dawA~halah 64 (235)
+|+.++++...++++.. .|..+.++..+|.++...|++++|++..++++.+ +|..+.++..+|.
T Consensus 56 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 135 (283)
T 3edt_B 56 QNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLAL 135 (283)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 58999999999999965 4667789999999999999999999999999999 6888999999999
Q ss_pred HHHHcCCHHHHHHHHHHchhhhccC---CcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026637 65 VLQHDCCFKEAVQFMEECSSTWSSC---SSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 125 (235)
Q Consensus 65 vl~~~Gr~~egi~~l~~a~~~w~~~---~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~ 125 (235)
++...|++++|+..++++....... +.......+..+|.+++..| ++++|+..|++.+..
T Consensus 136 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~~l~~ 198 (283)
T 3edt_B 136 LCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQG-KYQDAETLYKEILTR 198 (283)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHH
Confidence 9999999999999999998772110 01112345566999999998 999999999999875
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.17 E-value=1.1e-10 Score=101.21 Aligned_cols=121 Identities=9% Similarity=0.020 Sum_probs=107.9
Q ss_pred CCChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 026637 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME 80 (235)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~ 80 (235)
.|+.++|+..+++++..+|+..+.....+..+.+.++.++|++..+++++++|+++.++.++|.++..+|++++|+..++
T Consensus 164 ~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~ 243 (287)
T 3qou_A 164 LNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLF 243 (287)
T ss_dssp TTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCCHHHHHHHHHhCchhhcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 58999999999999999998888888888889999999999999999999999999999999999999999999999999
Q ss_pred HchhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026637 81 ECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 125 (235)
Q Consensus 81 ~a~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~ 125 (235)
+..+..|..+. ...+-.++.++...| +.++|+..|++.+..
T Consensus 244 ~~l~~~p~~~~---~~a~~~l~~~~~~~g-~~~~a~~~~r~al~~ 284 (287)
T 3qou_A 244 GHLRXDLTAAD---GQTRXTFQEILAALG-TGDALASXYRRQLYA 284 (287)
T ss_dssp HHHHHCTTGGG---GHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHhccccccc---chHHHHHHHHHHHcC-CCCcHHHHHHHHHHH
Confidence 99999877421 233445888888888 899999999998764
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=99.17 E-value=1.9e-10 Score=102.35 Aligned_cols=119 Identities=14% Similarity=0.077 Sum_probs=106.7
Q ss_pred CCChhhHHHHHHhhcCCCCCC---------------hhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 026637 1 MGRPDLCFDIIHQVLPYNQQE---------------DFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHV 65 (235)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~---------------~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahv 65 (235)
.|+.++|+...++++...|++ ..++..+|.++...|+|++|++.+++|++++|+++.++..+|.+
T Consensus 160 ~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~ 239 (336)
T 1p5q_A 160 EGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEA 239 (336)
T ss_dssp HTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 388999999999999999998 58999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHchhhhccCCcchhHHHHHHHHHHHHhCCCCHHHH-HHHHHhhchh
Q 026637 66 LQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKV-LEIYDNHIWK 125 (235)
Q Consensus 66 l~~~Gr~~egi~~l~~a~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deA-l~~yd~~i~~ 125 (235)
+..+|++++|+..++++....|..+ ..+..++.++...| +++++ ..+|.+.+..
T Consensus 240 ~~~~g~~~~A~~~~~~al~l~P~~~-----~a~~~l~~~~~~~~-~~~~a~~~~~~~~~~~ 294 (336)
T 1p5q_A 240 HLAVNDFELARADFQKVLQLYPNNK-----AAKTQLAVCQQRIR-RQLAREKKLYANMFER 294 (336)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCSSCH-----HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHCCCCH-----HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 9999999999999999999988742 34456999998888 89988 5577666544
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.17 E-value=4.1e-10 Score=83.20 Aligned_cols=104 Identities=11% Similarity=0.061 Sum_probs=93.8
Q ss_pred CCChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 026637 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME 80 (235)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~ 80 (235)
.|+.+++....++++..+|+++.++..+|.++...|++++|++.++++++++|+++.++..+|.++...|++++|+..++
T Consensus 29 ~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 108 (133)
T 2lni_A 29 KGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQ 108 (133)
T ss_dssp TTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 48899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HchhhhccCCcchhHHHHHHHHHHHHhCC
Q 026637 81 ECSSTWSSCSSFMYTHNWWHVALCYLEGH 109 (235)
Q Consensus 81 ~a~~~w~~~~~~l~~H~~WHlAL~~le~G 109 (235)
+.....|..+ -.+-.++.+++..|
T Consensus 109 ~~~~~~p~~~-----~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 109 KALDLDSSCK-----EAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHHCGGGT-----HHHHHHHHHHHHHT
T ss_pred HHHHhCCCch-----HHHHHHHHHHHHhc
Confidence 9999887743 23334777776654
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.16 E-value=2.2e-09 Score=99.23 Aligned_cols=118 Identities=8% Similarity=0.068 Sum_probs=95.2
Q ss_pred CChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 026637 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEE 81 (235)
Q Consensus 2 G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~~ 81 (235)
|+.++++...++++...|+++.++..++.++..+|++++|++.++++++++|+++.++..++.++...|++++|+..+++
T Consensus 353 g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 432 (597)
T 2xpi_A 353 GEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTT 432 (597)
T ss_dssp TCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 56667777777777777778888888888888888888888888888888888888888888888888888888888888
Q ss_pred chhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026637 82 CSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 125 (235)
Q Consensus 82 a~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~ 125 (235)
.....|..+ ..+..++..+...| ++++|+++|++.+..
T Consensus 433 ~~~~~~~~~-----~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~ 470 (597)
T 2xpi_A 433 AARLFQGTH-----LPYLFLGMQHMQLG-NILLANEYLQSSYAL 470 (597)
T ss_dssp HHHTTTTCS-----HHHHHHHHHHHHHT-CHHHHHHHHHHHHHH
T ss_pred HHHhCccch-----HHHHHHHHHHHHcC-CHHHHHHHHHHHHHh
Confidence 887776533 23345888888887 888888888888765
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=99.16 E-value=4.7e-10 Score=81.36 Aligned_cols=102 Identities=13% Similarity=0.221 Sum_probs=86.5
Q ss_pred CCCC-hhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhhccCCcchhHH
Q 026637 18 NQQE-DFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTH 96 (235)
Q Consensus 18 ~p~~-~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~~a~~~w~~~~~~l~~H 96 (235)
+|.. +..+..+|..+...|++++|++..++++.++|+++.++..++.++...|++++|+.++++.....|..+ .
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~-----~ 78 (125)
T 1na0_A 4 DPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNA-----E 78 (125)
T ss_dssp ---CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-----H
T ss_pred CccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccH-----H
Confidence 4544 678888999999999999999999999999999999999999999999999999999999988876632 3
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026637 97 NWWHVALCYLEGHSPMRKVLEIYDNHIWK 125 (235)
Q Consensus 97 ~~WHlAL~~le~G~~~deAl~~yd~~i~~ 125 (235)
.+..+|.++...| ++++|+..|++.+..
T Consensus 79 ~~~~la~~~~~~~-~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 79 AWYNLGNAYYKQG-DYDEAIEYYQKALEL 106 (125)
T ss_dssp HHHHHHHHHHHTT-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc-CHHHHHHHHHHHHHh
Confidence 4456899999988 899999999988764
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=99.15 E-value=7.3e-11 Score=110.50 Aligned_cols=114 Identities=10% Similarity=0.047 Sum_probs=100.1
Q ss_pred CCChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 026637 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME 80 (235)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~ 80 (235)
.|+.++|+...++++..+|+++.++..+|.++.+.|++++|++.+++|++++|+++.++..+|.++..+|++++|+..++
T Consensus 19 ~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~ 98 (477)
T 1wao_1 19 AKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYE 98 (477)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HchhhhccCCcchhHHHHHHHHHH--HHhCCCCHHHHHHHHH
Q 026637 81 ECSSTWSSCSSFMYTHNWWHVALC--YLEGHSPMRKVLEIYD 120 (235)
Q Consensus 81 ~a~~~w~~~~~~l~~H~~WHlAL~--~le~G~~~deAl~~yd 120 (235)
++....|..+ ..+.. ++.+ ++..| ++++|++.|+
T Consensus 99 ~al~~~p~~~---~~~~~--l~~~~~~~~~g-~~~~A~~~~~ 134 (477)
T 1wao_1 99 TVVKVKPHDK---DAKMK--YQECNKIVKQK-AFERAIAGDE 134 (477)
T ss_dssp HHHHHSTTCT---THHHH--HHHHHHHHHHH-HHCCC-----
T ss_pred HHHHhCCCCH---HHHHH--HHHHHHHHHHH-HHHHHhcccc
Confidence 9999988754 23443 5655 78887 9999999999
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.15 E-value=3.4e-09 Score=95.38 Aligned_cols=195 Identities=10% Similarity=0.039 Sum_probs=137.2
Q ss_pred CCChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 026637 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME 80 (235)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~ 80 (235)
.|+.++++..+++++...|.++.++..+|.++...|++++|+..++++++++|+++.++..++.++...|++++|+..++
T Consensus 283 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 362 (514)
T 2gw1_A 283 RNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFS 362 (514)
T ss_dssp SSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 47889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HchhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchhhhcCCCCCchHhHhHHHHHHHHHHhcCcccccccc
Q 026637 81 ECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNALGLLLRVYVRGELDVFGNR 160 (235)
Q Consensus 81 ~a~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~~~~~~~~~~~~~~~da~sLL~Rl~l~G~~~~~g~r 160 (235)
+.....|..+ ..+..+|.+++..| ++++|+..|++.+... ++.. .......+...+-++.+.-.. ..+
T Consensus 363 ~~~~~~~~~~-----~~~~~la~~~~~~~-~~~~A~~~~~~a~~~~--~~~~-~~~~~~~~~~~l~~~~~~~~~---~~~ 430 (514)
T 2gw1_A 363 EAKRKFPEAP-----EVPNFFAEILTDKN-DFDKALKQYDLAIELE--NKLD-GIYVGIAPLVGKATLLTRNPT---VEN 430 (514)
T ss_dssp HHHHHSTTCS-----HHHHHHHHHHHHTT-CHHHHHHHHHHHHHHH--HTSS-SCSSCSHHHHHHHHHHHTSCC---TTH
T ss_pred HHHHHcccCH-----HHHHHHHHHHHHCC-CHHHHHHHHHHHHHhh--hccc-hHHHHHHHHHHHHHHHhhhhh---cCC
Confidence 9998887744 34556999999998 9999999999988764 1211 100001122222222222000 012
Q ss_pred hHHHHHHHHhhh-cchhcchhhHHHHHHHhcCCCchHHHHHHHHHHHH
Q 026637 161 LKVLADCVADQA-NWYLECHLDLLILWALANTGEVSKAEDLLKGLKSR 207 (235)
Q Consensus 161 w~~la~~~~~~~-~~~~~~F~d~H~~~al~~ag~~~~~~~ll~~~~~~ 207 (235)
++.-...+..-. ..+..+..-.....++...|+.+.+.+.++..-..
T Consensus 431 ~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 478 (514)
T 2gw1_A 431 FIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADL 478 (514)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 332222222211 11111222234566777889988888777666554
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.14 E-value=5.6e-10 Score=81.62 Aligned_cols=106 Identities=11% Similarity=0.055 Sum_probs=96.8
Q ss_pred CCChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 026637 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME 80 (235)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~ 80 (235)
.|+.+++....++++...|+++.++..+|.++...|++++|+...++++.++|+++.++..+|.++...|++++|+..++
T Consensus 25 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 104 (131)
T 2vyi_A 25 VENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYK 104 (131)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 48899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HchhhhccCCcchhHHHHHHHHHHHHhCCCCH
Q 026637 81 ECSSTWSSCSSFMYTHNWWHVALCYLEGHSPM 112 (235)
Q Consensus 81 ~a~~~w~~~~~~l~~H~~WHlAL~~le~G~~~ 112 (235)
++....|..+ ..+..++.++...| ++
T Consensus 105 ~~~~~~p~~~-----~~~~~l~~~~~~~~-~~ 130 (131)
T 2vyi_A 105 KALELDPDNE-----TYKSNLKIAELKLR-EA 130 (131)
T ss_dssp HHHHHSTTCH-----HHHHHHHHHHHHHT-TC
T ss_pred HHHhcCccch-----HHHHHHHHHHHHHh-cC
Confidence 9999987743 34456888888776 54
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=99.13 E-value=1.2e-09 Score=79.08 Aligned_cols=103 Identities=12% Similarity=0.121 Sum_probs=92.5
Q ss_pred CCChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 026637 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME 80 (235)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~ 80 (235)
.|+.++++..+++++...|+++.++..+|..+...|++++|+...++++.++|+++.++..++.++...|++++|+..++
T Consensus 22 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 101 (125)
T 1na0_A 22 QGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQ 101 (125)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 48899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HchhhhccCCcchhHHHHHHHHHHHHhC
Q 026637 81 ECSSTWSSCSSFMYTHNWWHVALCYLEG 108 (235)
Q Consensus 81 ~a~~~w~~~~~~l~~H~~WHlAL~~le~ 108 (235)
+.....|..+ ..+..++..+...
T Consensus 102 ~~~~~~~~~~-----~~~~~l~~~~~~~ 124 (125)
T 1na0_A 102 KALELDPNNA-----EAKQNLGNAKQKQ 124 (125)
T ss_dssp HHHHHCTTCH-----HHHHHHHHHHHHH
T ss_pred HHHHhCCCcH-----HHHHHHHHHHHhc
Confidence 9999887743 2334467666544
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=99.13 E-value=3.3e-10 Score=85.18 Aligned_cols=88 Identities=11% Similarity=0.078 Sum_probs=85.7
Q ss_pred CCChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 026637 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME 80 (235)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~ 80 (235)
.|++++++..+++++..+|+++.++..+|.++...|++++|+..++++++++|+++.++..+|.++...|++++|+..++
T Consensus 22 ~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~ 101 (137)
T 3q49_B 22 GRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQ 101 (137)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Hchhhhcc
Q 026637 81 ECSSTWSS 88 (235)
Q Consensus 81 ~a~~~w~~ 88 (235)
++....|.
T Consensus 102 ~a~~~~p~ 109 (137)
T 3q49_B 102 RAYSLAKE 109 (137)
T ss_dssp HHHHHHHH
T ss_pred HHHHHChh
Confidence 99998877
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.13 E-value=2e-09 Score=93.50 Aligned_cols=115 Identities=10% Similarity=0.059 Sum_probs=101.6
Q ss_pred hhhHHHHHHhhcC-CCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHH
Q 026637 4 PDLCFDIIHQVLP-YNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCW-SQHALCHVLQHDCCFKEAVQFMEE 81 (235)
Q Consensus 4 ~~~al~~~~ral~-~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~daw-A~halahvl~~~Gr~~egi~~l~~ 81 (235)
.++++...+|++. ..|++..++..++..+...|++++|++.++++++++|+++. ++..++.++..+|++++++..+++
T Consensus 80 ~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 159 (308)
T 2ond_A 80 SDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKK 159 (308)
T ss_dssp HHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 3899999999999 79999999999999999999999999999999999999997 999999999999999999999999
Q ss_pred chhhhccCCcchhHHHHHHHHHHHHh---CCCCHHHHHHHHHhhchhh
Q 026637 82 CSSTWSSCSSFMYTHNWWHVALCYLE---GHSPMRKVLEIYDNHIWKE 126 (235)
Q Consensus 82 a~~~w~~~~~~l~~H~~WHlAL~~le---~G~~~deAl~~yd~~i~~~ 126 (235)
+....|.. .+.| ++...++ .| ++++|+++|++.+...
T Consensus 160 a~~~~p~~-----~~~~--~~~a~~~~~~~~-~~~~A~~~~~~al~~~ 199 (308)
T 2ond_A 160 AREDARTR-----HHVY--VTAALMEYYCSK-DKSVAFKIFELGLKKY 199 (308)
T ss_dssp HHTSTTCC-----THHH--HHHHHHHHHTSC-CHHHHHHHHHHHHHHH
T ss_pred HHhcCCCC-----HHHH--HHHHHHHHHHcC-CHHHHHHHHHHHHHhC
Confidence 99887653 2444 3444443 67 8999999999999873
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.12 E-value=4e-09 Score=92.59 Aligned_cols=125 Identities=12% Similarity=-0.014 Sum_probs=102.7
Q ss_pred CCChhhHHHHHHhhcCCCCCCh-----hHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCH------HHHHHHHHHHHHc
Q 026637 1 MGRPDLCFDIIHQVLPYNQQED-----FIFGILAFSLLELGQMSDAEEAAKKGLKINKHDC------WSQHALCHVLQHD 69 (235)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~-----~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~da------wA~halahvl~~~ 69 (235)
.|+.++++..+++++...|.+. .++..+|..+...|++++|++..++|+++.|+.. +++..+|.++..+
T Consensus 27 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~ 106 (373)
T 1hz4_A 27 DGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQ 106 (373)
T ss_dssp TTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHC
Confidence 4899999999999998776543 2678889999999999999999999999987653 4578899999999
Q ss_pred CCHHHHHHHHHHchhhhccCCc---chhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchhh
Q 026637 70 CCFKEAVQFMEECSSTWSSCSS---FMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE 126 (235)
Q Consensus 70 Gr~~egi~~l~~a~~~w~~~~~---~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~~ 126 (235)
|++++++..++++....+..+. ......+..+|..+.+.| ++++|++.|++.+...
T Consensus 107 G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~ 165 (373)
T 1hz4_A 107 GFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWA-RLDEAEASARSGIEVL 165 (373)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHh
Confidence 9999999999999887654221 112234445899999998 9999999999998763
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.12 E-value=2e-09 Score=93.88 Aligned_cols=113 Identities=17% Similarity=0.121 Sum_probs=68.7
Q ss_pred CChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH--HcCCHHHHHHHH
Q 026637 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQ--HDCCFKEAVQFM 79 (235)
Q Consensus 2 G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~--~~Gr~~egi~~l 79 (235)
|+.++|+..+++ |+++.++..++.++...|++++|++..+++++++|++.......+++.. ..|++++|+..+
T Consensus 115 g~~~~Al~~l~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~ 189 (291)
T 3mkr_A 115 QNPDAALRTLHQ-----GDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIF 189 (291)
T ss_dssp TCHHHHHHHHTT-----CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHH
T ss_pred CCHHHHHHHHhC-----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHH
Confidence 555555555555 5555566666666666666666666666666666666544444443322 335666666666
Q ss_pred HHchhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026637 80 EECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 125 (235)
Q Consensus 80 ~~a~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~ 125 (235)
++.....|..+ ..++.+|.+++..| ++++|++.|++.+..
T Consensus 190 ~~~l~~~p~~~-----~~~~~la~~~~~~g-~~~eA~~~l~~al~~ 229 (291)
T 3mkr_A 190 QEMADKCSPTL-----LLLNGQAACHMAQG-RWEAAEGVLQEALDK 229 (291)
T ss_dssp HHHHHHSCCCH-----HHHHHHHHHHHHTT-CHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCcH-----HHHHHHHHHHHHcC-CHHHHHHHHHHHHHh
Confidence 66666655421 23445777777776 777777777777765
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=99.11 E-value=4.2e-10 Score=89.52 Aligned_cols=125 Identities=10% Similarity=-0.071 Sum_probs=99.8
Q ss_pred CCChhhHHHHHHhhcC------CCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhh---CCCC----HHHHHHHHHHHH
Q 026637 1 MGRPDLCFDIIHQVLP------YNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKI---NKHD----CWSQHALCHVLQ 67 (235)
Q Consensus 1 ~G~~~~al~~~~ral~------~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L---~P~d----awA~halahvl~ 67 (235)
.|++++++...++++. ..|....++..+|.++...|++++|++.+++|+++ .|++ +.++..+|.++.
T Consensus 39 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~ 118 (203)
T 3gw4_A 39 MDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVAL 118 (203)
T ss_dssp TTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHH
T ss_pred hCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHH
Confidence 4888999999999888 44556678889999999999999999999999998 4533 567889999999
Q ss_pred HcCCHHHHHHHHHHchhhhccCCcc-hhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchhh
Q 026637 68 HDCCFKEAVQFMEECSSTWSSCSSF-MYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE 126 (235)
Q Consensus 68 ~~Gr~~egi~~l~~a~~~w~~~~~~-l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~~ 126 (235)
.+|++++|+..++++....+..+.. .....+..+|.+++..| ++++|++.|++.+...
T Consensus 119 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~ 177 (203)
T 3gw4_A 119 HFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEK-NLLEAQQHWLRARDIF 177 (203)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCc-CHHHHHHHHHHHHHHH
Confidence 9999999999999987765543321 12334456888898988 8999999998888764
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=99.11 E-value=1.5e-09 Score=79.52 Aligned_cols=105 Identities=7% Similarity=0.072 Sum_probs=91.7
Q ss_pred CChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhhccCCcch--hHHH
Q 026637 20 QEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFM--YTHN 97 (235)
Q Consensus 20 ~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~~a~~~w~~~~~~l--~~H~ 97 (235)
..+..+..+|..+...|++++|+..+++++.++|+++.++..+|.++...|++++|+..++++....|..+... ....
T Consensus 2 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 81 (131)
T 1elr_A 2 KQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKA 81 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHH
Confidence 34567788999999999999999999999999999999999999999999999999999999988887642210 1346
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026637 98 WWHVALCYLEGHSPMRKVLEIYDNHIWK 125 (235)
Q Consensus 98 ~WHlAL~~le~G~~~deAl~~yd~~i~~ 125 (235)
+..+|.++...| ++++|++.|++.+..
T Consensus 82 ~~~la~~~~~~~-~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 82 YARIGNSYFKEE-KYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHHHHTT-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc-cHHHHHHHHHHHHHh
Confidence 667999999998 999999999998876
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.11 E-value=8.8e-10 Score=83.09 Aligned_cols=104 Identities=6% Similarity=-0.085 Sum_probs=94.3
Q ss_pred CCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHchhhhccCCcc
Q 026637 16 PYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHD---CWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSF 92 (235)
Q Consensus 16 ~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~d---awA~halahvl~~~Gr~~egi~~l~~a~~~w~~~~~~ 92 (235)
...|.+...+..+|..+...|++++|+..++++++++|++ +.++..+|.++...|++++++..++++....|..
T Consensus 22 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~--- 98 (148)
T 2dba_A 22 TPGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGD--- 98 (148)
T ss_dssp CTTCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCC---
T ss_pred ccchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccC---
Confidence 3457788999999999999999999999999999999998 9999999999999999999999999999988764
Q ss_pred hhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026637 93 MYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 125 (235)
Q Consensus 93 l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~ 125 (235)
...+..+|.++...| ++++|+..|++.+..
T Consensus 99 --~~~~~~~a~~~~~~~-~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 99 --VKALYRRSQALEKLG-RLDQAVLDLQRCVSL 128 (148)
T ss_dssp --HHHHHHHHHHHHHHT-CHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHcC-CHHHHHHHHHHHHHc
Confidence 244556999999998 999999999999876
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.10 E-value=1.6e-09 Score=77.90 Aligned_cols=98 Identities=9% Similarity=0.028 Sum_probs=88.1
Q ss_pred hhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhhccCCcchhHHHHHHH
Q 026637 22 DFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHV 101 (235)
Q Consensus 22 ~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~~a~~~w~~~~~~l~~H~~WHl 101 (235)
+..+..+|..+...|++++|+...++++.++|+++.++..+|.++..+|++++|+..++++....|..+ ..+..+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~-----~~~~~~ 78 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWG-----KGYSRK 78 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH-----HHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccH-----HHHHHH
Confidence 456778889999999999999999999999999999999999999999999999999999999877632 455569
Q ss_pred HHHHHhCCCCHHHHHHHHHhhchh
Q 026637 102 ALCYLEGHSPMRKVLEIYDNHIWK 125 (235)
Q Consensus 102 AL~~le~G~~~deAl~~yd~~i~~ 125 (235)
|.++...| ++++|++.|++.+..
T Consensus 79 a~~~~~~~-~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 79 AAALEFLN-RFEEAKRTYEEGLKH 101 (118)
T ss_dssp HHHHHHTT-CHHHHHHHHHHHHTT
T ss_pred HHHHHHHh-hHHHHHHHHHHHHHc
Confidence 99999998 999999999998875
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.10 E-value=3.4e-10 Score=93.27 Aligned_cols=124 Identities=11% Similarity=0.083 Sum_probs=106.3
Q ss_pred CCChhhHHHHHHhhcCC--------CCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhh--------CCCCHHHHHHHHH
Q 026637 1 MGRPDLCFDIIHQVLPY--------NQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKI--------NKHDCWSQHALCH 64 (235)
Q Consensus 1 ~G~~~~al~~~~ral~~--------~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L--------~P~dawA~halah 64 (235)
+|+.++++...++++.. .|....++..+|.++...|++++|++.+++++++ .|..+.++..+|.
T Consensus 98 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 177 (283)
T 3edt_B 98 RGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLAS 177 (283)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 48999999999999987 4677789999999999999999999999999999 8888999999999
Q ss_pred HHHHcCCHHHHHHHHHHchhhhccC--------------------------------------------CcchhHHHHHH
Q 026637 65 VLQHDCCFKEAVQFMEECSSTWSSC--------------------------------------------SSFMYTHNWWH 100 (235)
Q Consensus 65 vl~~~Gr~~egi~~l~~a~~~w~~~--------------------------------------------~~~l~~H~~WH 100 (235)
++..+|++++|+..++++....+.. ...-....+..
T Consensus 178 ~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (283)
T 3edt_B 178 CYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRS 257 (283)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 9999999999999999998763320 00112335667
Q ss_pred HHHHHHhCCCCHHHHHHHHHhhchh
Q 026637 101 VALCYLEGHSPMRKVLEIYDNHIWK 125 (235)
Q Consensus 101 lAL~~le~G~~~deAl~~yd~~i~~ 125 (235)
+|.++...| ++++|+..|++.+..
T Consensus 258 la~~~~~~g-~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 258 LGALYRRQG-KLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHTT-CHHHHHHHHHHHHTT
T ss_pred HHHHHHHcC-CHHHHHHHHHHHHHh
Confidence 999999998 999999999998764
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=99.10 E-value=1.6e-10 Score=102.93 Aligned_cols=114 Identities=10% Similarity=-0.076 Sum_probs=100.3
Q ss_pred hHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCC---------------HHHHHHHHHHHHHcC
Q 026637 6 LCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHD---------------CWSQHALCHVLQHDC 70 (235)
Q Consensus 6 ~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~d---------------awA~halahvl~~~G 70 (235)
+++...++++...|+++.++..+|..+...|+|++|++.+++|++++|++ +.++.++|.++..+|
T Consensus 131 ~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g 210 (336)
T 1p5q_A 131 KAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQ 210 (336)
T ss_dssp CCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 34444455555677888999999999999999999999999999999999 699999999999999
Q ss_pred CHHHHHHHHHHchhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026637 71 CFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 125 (235)
Q Consensus 71 r~~egi~~l~~a~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~ 125 (235)
++++|+..++++....|..+ ..+..+|.+++..| ++++|+..|++.+..
T Consensus 211 ~~~~A~~~~~~al~~~p~~~-----~a~~~lg~~~~~~g-~~~~A~~~~~~al~l 259 (336)
T 1p5q_A 211 AFSAAIESCNKALELDSNNE-----KGLSRRGEAHLAVN-DFELARADFQKVLQL 259 (336)
T ss_dssp CHHHHHHHHHHHHHHCTTCH-----HHHHHHHHHHHHTT-CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCcH-----HHHHHHHHHHHHCC-CHHHHHHHHHHHHHH
Confidence 99999999999999987742 34446999999998 999999999999987
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.10 E-value=2.5e-09 Score=95.28 Aligned_cols=123 Identities=11% Similarity=0.140 Sum_probs=82.2
Q ss_pred CCChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHH------------HHHHHH
Q 026637 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHAL------------CHVLQH 68 (235)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~hal------------ahvl~~ 68 (235)
.|+.++++..+++++...|+++.++..+|.++...|++++|++.+++++.++|+++.....+ +.++..
T Consensus 190 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (450)
T 2y4t_A 190 EGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIR 269 (450)
T ss_dssp TTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36667777777777777777777777777777777777777777777777777776666555 677777
Q ss_pred cCCHHHHHHHHHHchhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026637 69 DCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 125 (235)
Q Consensus 69 ~Gr~~egi~~l~~a~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~ 125 (235)
.|++++|+..++++....|..+.+ ....+..++.++...| ++++|+..|++.+..
T Consensus 270 ~g~~~~A~~~~~~~l~~~p~~~~~-~~~~~~~l~~~~~~~g-~~~~A~~~~~~a~~~ 324 (450)
T 2y4t_A 270 DGRYTDATSKYESVMKTEPSIAEY-TVRSKERICHCFSKDE-KPVEAIRVCSEVLQM 324 (450)
T ss_dssp HTCHHHHHHHHHHHHHHCCSSHHH-HHHHHHHHHHHHHTTT-CHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhcCCcchHH-HHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHh
Confidence 777777777777776666553311 1223344677777776 777777777776654
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.10 E-value=7e-10 Score=95.97 Aligned_cols=122 Identities=10% Similarity=-0.035 Sum_probs=64.8
Q ss_pred CChhhHHHHHHhhcCCCCCC------hhHHHHHHHHHHHh-CCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHH
Q 026637 2 GRPDLCFDIIHQVLPYNQQE------DFIFGILAFSLLEL-GQMSDAEEAAKKGLKINKHD------CWSQHALCHVLQH 68 (235)
Q Consensus 2 G~~~~al~~~~ral~~~p~~------~~~~g~~Af~L~e~-g~~~~Ae~~arrAL~L~P~d------awA~halahvl~~ 68 (235)
|+.++++...++++...|.. ..++..+|.++... |++++|++.+++|+++.|++ +.++..+|.++..
T Consensus 91 g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~ 170 (292)
T 1qqe_A 91 GNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKAL 170 (292)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHH
Confidence 55555666666665554421 23555555556554 66666666666666665544 3445555666666
Q ss_pred cCCHHHHHHHHHHchhhhccCCcc--hhHHHHHHHHHHHHhCCCCHHHHHHHHHhhch
Q 026637 69 DCCFKEAVQFMEECSSTWSSCSSF--MYTHNWWHVALCYLEGHSPMRKVLEIYDNHIW 124 (235)
Q Consensus 69 ~Gr~~egi~~l~~a~~~w~~~~~~--l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~ 124 (235)
+|++++|+..++++....|..+.. .....+-.++++++..| ++++|+..|++.+.
T Consensus 171 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~ 227 (292)
T 1qqe_A 171 DGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAAT-DAVAAARTLQEGQS 227 (292)
T ss_dssp TTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTT-CHHHHHHHHHGGGC
T ss_pred hCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHh
Confidence 666666666666665555443211 00012233555555555 56666666655554
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=99.09 E-value=1.5e-09 Score=80.74 Aligned_cols=99 Identities=12% Similarity=0.029 Sum_probs=87.5
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHchhhhccCCcchhHHHHHH
Q 026637 24 IFGILAFSLLELGQMSDAEEAAKKGLKINKHDC---WSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWH 100 (235)
Q Consensus 24 ~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~da---wA~halahvl~~~Gr~~egi~~l~~a~~~w~~~~~~l~~H~~WH 100 (235)
.+...|..+...|++++|+..++++++.+|+++ .++..+|.++..+|++++|+..+++.....|..+. ....+..
T Consensus 4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~--~~~~~~~ 81 (129)
T 2xev_A 4 TAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDK--AAGGLLK 81 (129)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTT--HHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcc--cHHHHHH
Confidence 456788899999999999999999999999999 79999999999999999999999999999888532 1234456
Q ss_pred HHHHHHhCCCCHHHHHHHHHhhchh
Q 026637 101 VALCYLEGHSPMRKVLEIYDNHIWK 125 (235)
Q Consensus 101 lAL~~le~G~~~deAl~~yd~~i~~ 125 (235)
+|.+++..| ++++|+..|++.+..
T Consensus 82 la~~~~~~g-~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 82 LGLSQYGEG-KNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHHHHTT-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHcC-CHHHHHHHHHHHHHH
Confidence 999999998 999999999999876
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=99.09 E-value=2.9e-10 Score=93.21 Aligned_cols=92 Identities=15% Similarity=0.032 Sum_probs=85.3
Q ss_pred CCChhhHHHHHHhhcCCCCC-------Chh-----HHHHHHHHHHHhCCHHHHHHHHHHHHhh-------CCCCHHHH--
Q 026637 1 MGRPDLCFDIIHQVLPYNQQ-------EDF-----IFGILAFSLLELGQMSDAEEAAKKGLKI-------NKHDCWSQ-- 59 (235)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~-------~~~-----~~g~~Af~L~e~g~~~~Ae~~arrAL~L-------~P~dawA~-- 59 (235)
.|++++++....+++..+|+ +.. ++.++|.++...|+|++|+..+++||++ +|+++.++
T Consensus 24 ~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~ 103 (159)
T 2hr2_A 24 AGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWIS 103 (159)
T ss_dssp HTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHH
Confidence 38999999999999999998 333 9999999999999999999999999999 99999999
Q ss_pred --HHHHHHHHHcCCHHHHHHHHHHchhhhccCCcc
Q 026637 60 --HALCHVLQHDCCFKEAVQFMEECSSTWSSCSSF 92 (235)
Q Consensus 60 --halahvl~~~Gr~~egi~~l~~a~~~w~~~~~~ 92 (235)
.++|.++...||++||+..++++....|.+...
T Consensus 104 ~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~ 138 (159)
T 2hr2_A 104 AVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGE 138 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSC
T ss_pred HHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHH
Confidence 999999999999999999999999999887643
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.09 E-value=1.5e-09 Score=90.16 Aligned_cols=124 Identities=9% Similarity=-0.044 Sum_probs=106.1
Q ss_pred CCChhhHHHHHHhhcCCCCCCh---hHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHH---HHHHHHHHHHH------
Q 026637 1 MGRPDLCFDIIHQVLPYNQQED---FIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCW---SQHALCHVLQH------ 68 (235)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~---~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~daw---A~halahvl~~------ 68 (235)
.|+.++|....++++...|+++ .++..+|.++...|++++|++.++++++++|+++. ++..+|.++..
T Consensus 17 ~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~~~~~~~ 96 (225)
T 2yhc_A 17 DGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSAL 96 (225)
T ss_dssp HTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHC---
T ss_pred cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHhhhhhhh
Confidence 3899999999999998888765 58899999999999999999999999999999985 78889988876
Q ss_pred ------------cCCHHHHHHHHHHchhhhccCCcchhH------------HHHHHHHHHHHhCCCCHHHHHHHHHhhch
Q 026637 69 ------------DCCFKEAVQFMEECSSTWSSCSSFMYT------------HNWWHVALCYLEGHSPMRKVLEIYDNHIW 124 (235)
Q Consensus 69 ------------~Gr~~egi~~l~~a~~~w~~~~~~l~~------------H~~WHlAL~~le~G~~~deAl~~yd~~i~ 124 (235)
+|++++|+..+++.....|+.+..... -....+|.+++..| ++++|+..|++.|.
T Consensus 97 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~-~~~~A~~~~~~~l~ 175 (225)
T 2yhc_A 97 QGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERG-AWVAVVNRVEGMLR 175 (225)
T ss_dssp -----------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHH
T ss_pred hhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-cHHHHHHHHHHHHH
Confidence 689999999999999999986522110 01145788899998 99999999999998
Q ss_pred h
Q 026637 125 K 125 (235)
Q Consensus 125 ~ 125 (235)
.
T Consensus 176 ~ 176 (225)
T 2yhc_A 176 D 176 (225)
T ss_dssp H
T ss_pred H
Confidence 7
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.09 E-value=7.4e-10 Score=79.20 Aligned_cols=89 Identities=11% Similarity=0.022 Sum_probs=85.6
Q ss_pred CCChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHc-CCHHHHHH
Q 026637 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKH--DCWSQHALCHVLQHD-CCFKEAVQ 77 (235)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~--dawA~halahvl~~~-Gr~~egi~ 77 (235)
.|+.++++...++++...|.++.++..+|.++...|++++|++.++++++++|+ ++.++..++.++... |++++|+.
T Consensus 19 ~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~ 98 (112)
T 2kck_A 19 AGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADALRYIEGKEVEAEI 98 (112)
T ss_dssp SCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHHTTCSSCSHHHHH
T ss_pred hhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHhCCHHHHHH
Confidence 489999999999999999999999999999999999999999999999999999 999999999999999 99999999
Q ss_pred HHHHchhhhccC
Q 026637 78 FMEECSSTWSSC 89 (235)
Q Consensus 78 ~l~~a~~~w~~~ 89 (235)
.+++.....|..
T Consensus 99 ~~~~~~~~~p~~ 110 (112)
T 2kck_A 99 AEARAKLEHHHH 110 (112)
T ss_dssp HHHHHGGGCCCC
T ss_pred HHHHHhhcccCC
Confidence 999999888764
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.09 E-value=5.7e-09 Score=85.81 Aligned_cols=99 Identities=12% Similarity=0.005 Sum_probs=89.0
Q ss_pred ChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHH----------------HHHHHHHcCCHHHHHHHHHHchh
Q 026637 21 EDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA----------------LCHVLQHDCCFKEAVQFMEECSS 84 (235)
Q Consensus 21 ~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~ha----------------lahvl~~~Gr~~egi~~l~~a~~ 84 (235)
+...+...|..+.+.|++++|+..++++++++|+++.++.. +|.++..+|++++|+..++++..
T Consensus 3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 82 (208)
T 3urz_A 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ 82 (208)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34456678888999999999999999999999999999999 99999999999999999999999
Q ss_pred hhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026637 85 TWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 125 (235)
Q Consensus 85 ~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~ 125 (235)
..|..+ ..+..+|.+++..| ++++|+..|++.+..
T Consensus 83 ~~p~~~-----~~~~~lg~~~~~~g-~~~~A~~~~~~al~~ 117 (208)
T 3urz_A 83 KAPNNV-----DCLEACAEMQVCRG-QEKDALRMYEKILQL 117 (208)
T ss_dssp HCTTCH-----HHHHHHHHHHHHHT-CHHHHHHHHHHHHHH
T ss_pred HCCCCH-----HHHHHHHHHHHHcC-CHHHHHHHHHHHHHc
Confidence 998753 33445999999998 999999999999987
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=99.09 E-value=1e-09 Score=89.98 Aligned_cols=100 Identities=14% Similarity=0.150 Sum_probs=87.8
Q ss_pred ChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCC-------C-----HHHHHHHHHHHHHcCCHHHHHHHHHHchhh---
Q 026637 21 EDFIFGILAFSLLELGQMSDAEEAAKKGLKINKH-------D-----CWSQHALCHVLQHDCCFKEAVQFMEECSST--- 85 (235)
Q Consensus 21 ~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~-------d-----awA~halahvl~~~Gr~~egi~~l~~a~~~--- 85 (235)
..+.+...|..+...|+|++|++.+++||+++|+ + ++++.++|.++...||++||+..+++++..
T Consensus 10 ~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~ 89 (159)
T 2hr2_A 10 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR 89 (159)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhc
Confidence 3467778888999999999999999999999999 3 459999999999999999999999999999
Q ss_pred ----hccCCcchhHHHH----HHHHHHHHhCCCCHHHHHHHHHhhchhh
Q 026637 86 ----WSSCSSFMYTHNW----WHVALCYLEGHSPMRKVLEIYDNHIWKE 126 (235)
Q Consensus 86 ----w~~~~~~l~~H~~----WHlAL~~le~G~~~deAl~~yd~~i~~~ 126 (235)
.|+. .-.| ...|.++..+| ++++|+..|++.|.-.
T Consensus 90 ~~e~~pd~-----~~A~~~~~~~rG~aL~~lg-r~eEAl~~y~kAlel~ 132 (159)
T 2hr2_A 90 RGELNQDE-----GKLWISAVYSRALALDGLG-RGAEAMPEFKKVVEMI 132 (159)
T ss_dssp HCCTTSTH-----HHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHH
T ss_pred cccCCCch-----HHHHHHHHHhHHHHHHHCC-CHHHHHHHHHHHHhcC
Confidence 7663 2233 46999999998 9999999999998764
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=99.08 E-value=4.4e-10 Score=97.32 Aligned_cols=90 Identities=11% Similarity=0.067 Sum_probs=85.9
Q ss_pred CCChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 026637 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME 80 (235)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~ 80 (235)
.|+.++|+...++++..+|+++.++..+|.++...|++++|++.+++|++++|+++.++..+|.++..+|++++|+..++
T Consensus 17 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 96 (281)
T 2c2l_A 17 GRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQ 96 (281)
T ss_dssp TTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HchhhhccCC
Q 026637 81 ECSSTWSSCS 90 (235)
Q Consensus 81 ~a~~~w~~~~ 90 (235)
++....|..+
T Consensus 97 ~al~l~p~~~ 106 (281)
T 2c2l_A 97 RAYSLAKEQR 106 (281)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHhCccch
Confidence 9988888653
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.08 E-value=6e-09 Score=91.87 Aligned_cols=204 Identities=13% Similarity=0.086 Sum_probs=137.1
Q ss_pred CCChhhHHHHHHhhcCCCCCCh----hHHHHHHHHHHHhCCHHHHHHHHHHHHhh------CCCCHHHHHHHHHHHHHcC
Q 026637 1 MGRPDLCFDIIHQVLPYNQQED----FIFGILAFSLLELGQMSDAEEAAKKGLKI------NKHDCWSQHALCHVLQHDC 70 (235)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~----~~~g~~Af~L~e~g~~~~Ae~~arrAL~L------~P~dawA~halahvl~~~G 70 (235)
.|+.++++..+++++...|+++ .++..+|..+...|++++|++.+++++++ +|..+.++..+|.++..+|
T Consensus 61 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g 140 (411)
T 4a1s_A 61 AGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMG 140 (411)
T ss_dssp TTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred hCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCC
Confidence 4899999999999999999887 58899999999999999999999999999 7999999999999999999
Q ss_pred CHHHHHHHHHHchhhhccCCc-chhHHHHHHHHHHHHhCCCC-----------------HHHHHHHHHhhchhhhcCCCC
Q 026637 71 CFKEAVQFMEECSSTWSSCSS-FMYTHNWWHVALCYLEGHSP-----------------MRKVLEIYDNHIWKELEKPDA 132 (235)
Q Consensus 71 r~~egi~~l~~a~~~w~~~~~-~l~~H~~WHlAL~~le~G~~-----------------~deAl~~yd~~i~~~~~~~~~ 132 (235)
++++|+..++++....+..+. ......+..+|.++...| + +++|++.|++.+..... .+
T Consensus 141 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~-~~- 217 (411)
T 4a1s_A 141 RFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKG-KHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRD-LG- 217 (411)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHH-HHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHH-HT-
T ss_pred CHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcC-cccccccchhhhhhhhHHHHHHHHHHHHHHHHHHH-cC-
Confidence 999999999999877543221 112345667999999998 9 99999999988765311 11
Q ss_pred CchHhHhHHHHHHHHHHh-cCcccccccchHHHHHHHHhhhcchhcchhhHHHHHHHhcCCCchHHHHHHHHHHHHh
Q 026637 133 VHPEVYLNALGLLLRVYV-RGELDVFGNRLKVLADCVADQANWYLECHLDLLILWALANTGEVSKAEDLLKGLKSRH 208 (235)
Q Consensus 133 ~~~~~~~da~sLL~Rl~l-~G~~~~~g~rw~~la~~~~~~~~~~~~~F~d~H~~~al~~ag~~~~~~~ll~~~~~~~ 208 (235)
.......+...+-++.+ .|....--.-.+..........+.......-......+...|+.+.+.+.++..-...
T Consensus 218 -~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 293 (411)
T 4a1s_A 218 -DRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALA 293 (411)
T ss_dssp -CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred -CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 11112222222222222 2221000011222222222211112212223344667778888888877776555444
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.08 E-value=3.4e-09 Score=96.29 Aligned_cols=118 Identities=8% Similarity=-0.012 Sum_probs=109.8
Q ss_pred CCChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 026637 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME 80 (235)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~ 80 (235)
.|+.++++..+++++...|+ +.++..+|..+...|++++|++..+++++++|+++.++..+|.++...|++++|+..++
T Consensus 256 ~~~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 334 (537)
T 3fp2_A 256 KNNLLDAQVLLQESINLHPT-PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQ 334 (537)
T ss_dssp TTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 47889999999999999999 89999999999999999999999999999999999999999999999999999999999
Q ss_pred HchhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026637 81 ECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 125 (235)
Q Consensus 81 ~a~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~ 125 (235)
++....|..+ ..+..+|.++...| ++++|+..|++.+..
T Consensus 335 ~a~~~~~~~~-----~~~~~la~~~~~~g-~~~~A~~~~~~~~~~ 373 (537)
T 3fp2_A 335 KAQSLNPENV-----YPYIQLACLLYKQG-KFTESEAFFNETKLK 373 (537)
T ss_dssp HHHHHCTTCS-----HHHHHHHHHHHHTT-CHHHHHHHHHHHHHH
T ss_pred HHHHhCCCCH-----HHHHHHHHHHHHcC-CHHHHHHHHHHHHHh
Confidence 9999987754 34556999999998 999999999999877
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.07 E-value=1.9e-09 Score=77.52 Aligned_cols=89 Identities=13% Similarity=0.104 Sum_probs=85.5
Q ss_pred CCChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 026637 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME 80 (235)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~ 80 (235)
.|+.+++....++++...|+++.++..+|.++...|++++|....+++++++|+++.++..+|.++...|++++|+..++
T Consensus 17 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~ 96 (118)
T 1elw_A 17 VGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYE 96 (118)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 48899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HchhhhccC
Q 026637 81 ECSSTWSSC 89 (235)
Q Consensus 81 ~a~~~w~~~ 89 (235)
++....|..
T Consensus 97 ~~~~~~~~~ 105 (118)
T 1elw_A 97 EGLKHEANN 105 (118)
T ss_dssp HHHTTCTTC
T ss_pred HHHHcCCCC
Confidence 999887764
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.07 E-value=4.9e-10 Score=85.85 Aligned_cols=88 Identities=9% Similarity=0.091 Sum_probs=82.9
Q ss_pred CCChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCH-------HHHHHHHHHHHHcCCHH
Q 026637 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDC-------WSQHALCHVLQHDCCFK 73 (235)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~da-------wA~halahvl~~~Gr~~ 73 (235)
.|++++|+...++++..+|+++.++..+|.++.+.|+|++|++.+++|++++|++. .++..+|.++..+|+++
T Consensus 21 ~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~ 100 (127)
T 4gcn_A 21 QKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLS 100 (127)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHHcCCHH
Confidence 48999999999999999999999999999999999999999999999999999874 58889999999999999
Q ss_pred HHHHHHHHchhhhcc
Q 026637 74 EAVQFMEECSSTWSS 88 (235)
Q Consensus 74 egi~~l~~a~~~w~~ 88 (235)
+|+..++++....|+
T Consensus 101 ~A~~~~~kal~~~~~ 115 (127)
T 4gcn_A 101 LAVQWFHRSLSEFRD 115 (127)
T ss_dssp HHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHhhCcC
Confidence 999999999887765
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.07 E-value=2.3e-09 Score=93.03 Aligned_cols=119 Identities=5% Similarity=-0.090 Sum_probs=105.3
Q ss_pred CCChhhHHHHHHhhcCCCCCChh-HHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-cCCHHHHHHH
Q 026637 1 MGRPDLCFDIIHQVLPYNQQEDF-IFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQH-DCCFKEAVQF 78 (235)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~-~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~-~Gr~~egi~~ 78 (235)
.|+.++++...++++...|.++. ++..++-.+...|++++|++.+++|++++|.++..+...+..... .|++++|+..
T Consensus 112 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~ 191 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKI 191 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 48899999999999999999886 899999999999999999999999999999998887766666443 7999999999
Q ss_pred HHHchhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026637 79 MEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 125 (235)
Q Consensus 79 l~~a~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~ 125 (235)
++++....|..+ .+|-.++.++...| ++++|+.+|++.+..
T Consensus 192 ~~~al~~~p~~~-----~~~~~~~~~~~~~g-~~~~A~~~~~~al~~ 232 (308)
T 2ond_A 192 FELGLKKYGDIP-----EYVLAYIDYLSHLN-EDNNTRVLFERVLTS 232 (308)
T ss_dssp HHHHHHHHTTCH-----HHHHHHHHHHHTTC-CHHHHHHHHHHHHHS
T ss_pred HHHHHHhCCCcH-----HHHHHHHHHHHHCC-CHHHHHHHHHHHHhc
Confidence 999999988743 45666888898988 999999999999984
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.07 E-value=7.8e-10 Score=83.27 Aligned_cols=125 Identities=14% Similarity=0.105 Sum_probs=104.3
Q ss_pred CCChhhHHHHHHhhcCCCCCCh------hHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHH
Q 026637 1 MGRPDLCFDIIHQVLPYNQQED------FIFGILAFSLLELGQMSDAEEAAKKGLKINKHD------CWSQHALCHVLQH 68 (235)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~------~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~d------awA~halahvl~~ 68 (235)
.|++++++...++++...+... .++..+|..+...|++++|++.+++++++.|+. +.++..+|.++..
T Consensus 22 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~ 101 (164)
T 3ro3_A 22 LGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTL 101 (164)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence 4889999999999998755322 588899999999999999999999999988765 7789999999999
Q ss_pred cCCHHHHHHHHHHchhhhccCCc-chhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchhh
Q 026637 69 DCCFKEAVQFMEECSSTWSSCSS-FMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE 126 (235)
Q Consensus 69 ~Gr~~egi~~l~~a~~~w~~~~~-~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~~ 126 (235)
+|++++|+..++++....+..+. ......+..+|.+++..| ++++|++.|++.+...
T Consensus 102 ~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~a~~~~ 159 (164)
T 3ro3_A 102 LQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALG-NHDQAMHFAEKHLEIS 159 (164)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHHH
Confidence 99999999999999877654322 223345667999999998 9999999999988763
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.06 E-value=6.7e-09 Score=87.05 Aligned_cols=122 Identities=16% Similarity=0.153 Sum_probs=106.4
Q ss_pred CCChhhHHHHHHhhcCC--------CCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhh--------CCCCHHHHHHHHH
Q 026637 1 MGRPDLCFDIIHQVLPY--------NQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKI--------NKHDCWSQHALCH 64 (235)
Q Consensus 1 ~G~~~~al~~~~ral~~--------~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L--------~P~dawA~halah 64 (235)
.|+.++++...++++.. .|....++..+|.++...|++++|+..+++++.+ +|..+.++..+|.
T Consensus 40 ~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~ 119 (311)
T 3nf1_A 40 QGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAV 119 (311)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 48899999999999984 6677889999999999999999999999999998 5777899999999
Q ss_pred HHHHcCCHHHHHHHHHHchhhh-----ccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026637 65 VLQHDCCFKEAVQFMEECSSTW-----SSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 125 (235)
Q Consensus 65 vl~~~Gr~~egi~~l~~a~~~w-----~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~ 125 (235)
++...|++++|+..++++.... +..+. ....+..+|.+++..| ++++|++.|++.+..
T Consensus 120 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~--~~~~~~~la~~~~~~~-~~~~A~~~~~~a~~~ 182 (311)
T 3nf1_A 120 LYGKRGKYKEAEPLCKRALEIREKVLGKDHPD--VAKQLNNLALLCQNQG-KYEEVEYYYQRALEI 182 (311)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHH--HHHHHHHHHHHHHTTT-CHHHHHHHHHHHHHH
T ss_pred HHHHcCcHHHHHHHHHHHHHHHHHhcCCCChH--HHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHH
Confidence 9999999999999999998875 22221 2345566999999998 999999999999876
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.06 E-value=1.1e-09 Score=90.99 Aligned_cols=122 Identities=7% Similarity=-0.009 Sum_probs=104.7
Q ss_pred CCChhhHHHHHHhhcCCCCCChh---HHHHHHHHHHH------------------hCCHHHHHHHHHHHHhhCCCCHHHH
Q 026637 1 MGRPDLCFDIIHQVLPYNQQEDF---IFGILAFSLLE------------------LGQMSDAEEAAKKGLKINKHDCWSQ 59 (235)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~---~~g~~Af~L~e------------------~g~~~~Ae~~arrAL~L~P~dawA~ 59 (235)
+|+.++|+...++++..+|+++. ++.++|.++.+ .|++++|....+++++..|+++.+.
T Consensus 54 ~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~ 133 (225)
T 2yhc_A 54 NADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTT 133 (225)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHH
T ss_pred cCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHH
Confidence 58999999999999999998774 78888888876 5799999999999999999999876
Q ss_pred -----------------HHHHHHHHHcCCHHHHHHHHHHchhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhh
Q 026637 60 -----------------HALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNH 122 (235)
Q Consensus 60 -----------------halahvl~~~Gr~~egi~~l~~a~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~ 122 (235)
..+|.++..+|++++|+..+++.....|..+.. .-.+-.++.++..+| ++++|++.|++.
T Consensus 134 ~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~--~~a~~~l~~~~~~~g-~~~~A~~~~~~l 210 (225)
T 2yhc_A 134 DATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQAT--RDALPLMENAYRQMQ-MNAQAEKVAKII 210 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHH--HHHHHHHHHHHHHTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCcc--HHHHHHHHHHHHHcC-CcHHHHHHHHHH
Confidence 567889999999999999999999999885421 223445999999998 999999999866
Q ss_pred chh
Q 026637 123 IWK 125 (235)
Q Consensus 123 i~~ 125 (235)
+..
T Consensus 211 ~~~ 213 (225)
T 2yhc_A 211 AAN 213 (225)
T ss_dssp HHC
T ss_pred Hhh
Confidence 554
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=99.05 E-value=1.2e-09 Score=81.30 Aligned_cols=89 Identities=12% Similarity=-0.010 Sum_probs=84.8
Q ss_pred CCChhhHHHHHHhhcCCCCCCh---hHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHH
Q 026637 1 MGRPDLCFDIIHQVLPYNQQED---FIFGILAFSLLELGQMSDAEEAAKKGLKINKHD---CWSQHALCHVLQHDCCFKE 74 (235)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~---~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~d---awA~halahvl~~~Gr~~e 74 (235)
.|+++++...+++++..+|+++ .++..+|.++...|++++|+..+++++.++|++ +.++..+|.++..+|++++
T Consensus 15 ~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~~~g~~~~ 94 (129)
T 2xev_A 15 NGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYGEGKNTE 94 (129)
T ss_dssp TTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHH
T ss_pred hCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHcCCHHH
Confidence 4899999999999999999988 699999999999999999999999999999999 8999999999999999999
Q ss_pred HHHHHHHchhhhccC
Q 026637 75 AVQFMEECSSTWSSC 89 (235)
Q Consensus 75 gi~~l~~a~~~w~~~ 89 (235)
|+..+++.....|+.
T Consensus 95 A~~~~~~~~~~~p~~ 109 (129)
T 2xev_A 95 AQQTLQQVATQYPGS 109 (129)
T ss_dssp HHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHCCCC
Confidence 999999999998874
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.05 E-value=3.7e-09 Score=92.20 Aligned_cols=119 Identities=8% Similarity=-0.069 Sum_probs=100.3
Q ss_pred CCChhhHHHHHHhhcCCCCCChhHHHHHHH--HHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 026637 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAF--SLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQF 78 (235)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~~g~~Af--~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~ 78 (235)
+|+.++|...+++++..+|++....-..++ .+...|++++|++.++++++.+|+++.++.++|.++..+|++++|+..
T Consensus 143 ~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~ 222 (291)
T 3mkr_A 143 LDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGV 222 (291)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHH
Confidence 599999999999999999988654433343 233458999999999999999999999999999999999999999999
Q ss_pred HHHchhhhccCCcchhHHHHHHHHHHHHhCCCCHHH-HHHHHHhhchh
Q 026637 79 MEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRK-VLEIYDNHIWK 125 (235)
Q Consensus 79 l~~a~~~w~~~~~~l~~H~~WHlAL~~le~G~~~de-Al~~yd~~i~~ 125 (235)
++++....|..+ ..+.+++.++...| ++++ +.+.+++.+..
T Consensus 223 l~~al~~~p~~~-----~~l~~l~~~~~~~g-~~~eaa~~~~~~~~~~ 264 (291)
T 3mkr_A 223 LQEALDKDSGHP-----ETLINLVVLSQHLG-KPPEVTNRYLSQLKDA 264 (291)
T ss_dssp HHHHHHHCTTCH-----HHHHHHHHHHHHTT-CCHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCH-----HHHHHHHHHHHHcC-CCHHHHHHHHHHHHHh
Confidence 999999998754 34456999999998 6765 67888887766
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.05 E-value=1.2e-08 Score=85.53 Aligned_cols=204 Identities=12% Similarity=0.030 Sum_probs=136.6
Q ss_pred CCChhhHHHHHHhhcCCCCCCh----hHHHHHHHHHHHhCCHHHHHHHHHHHHhh------CCCCHHHHHHHHHHHHHcC
Q 026637 1 MGRPDLCFDIIHQVLPYNQQED----FIFGILAFSLLELGQMSDAEEAAKKGLKI------NKHDCWSQHALCHVLQHDC 70 (235)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~----~~~g~~Af~L~e~g~~~~Ae~~arrAL~L------~P~dawA~halahvl~~~G 70 (235)
.|++++++..+++++...|+++ .++..+|..+...|++++|++.+++++++ .|..+.++..+|.++...|
T Consensus 18 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g 97 (338)
T 3ro2_A 18 SGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLG 97 (338)
T ss_dssp TTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT
T ss_pred hccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHcc
Confidence 4899999999999999999884 67889999999999999999999999999 7777899999999999999
Q ss_pred CHHHHHHHHHHchhhhccCCc-chhHHHHHHHHHHHHhCCCC--------------------HHHHHHHHHhhchhhhcC
Q 026637 71 CFKEAVQFMEECSSTWSSCSS-FMYTHNWWHVALCYLEGHSP--------------------MRKVLEIYDNHIWKELEK 129 (235)
Q Consensus 71 r~~egi~~l~~a~~~w~~~~~-~l~~H~~WHlAL~~le~G~~--------------------~deAl~~yd~~i~~~~~~ 129 (235)
++++|+..++++....+..+. ......+..+|.++...| + +++|++.|++.+.... +
T Consensus 98 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~-~ 175 (338)
T 3ro2_A 98 NFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKG-KSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVT-A 175 (338)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH-HTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHH-H
T ss_pred CHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcC-cccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHH-h
Confidence 999999999999887665432 122345667999999998 9 9999999998876531 1
Q ss_pred CCCCchHhHhHHHHHHHHHHh-cCcccccccchHHHHHHHHhhhcchhcchhhHHHHHHHhcCCCchHHHHHHHHHHHHh
Q 026637 130 PDAVHPEVYLNALGLLLRVYV-RGELDVFGNRLKVLADCVADQANWYLECHLDLLILWALANTGEVSKAEDLLKGLKSRH 208 (235)
Q Consensus 130 ~~~~~~~~~~da~sLL~Rl~l-~G~~~~~g~rw~~la~~~~~~~~~~~~~F~d~H~~~al~~ag~~~~~~~ll~~~~~~~ 208 (235)
.+ .......+...+-++.+ .|....--.-.+...+......+.......-......+...|+.+.+...++..-...
T Consensus 176 ~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 253 (338)
T 3ro2_A 176 LG--DRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLA 253 (338)
T ss_dssp HT--CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred cC--CHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 11 11112222222222222 1221000111222222222111122222233444566777888888877766554443
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.04 E-value=6.8e-10 Score=87.09 Aligned_cols=89 Identities=12% Similarity=0.115 Sum_probs=84.2
Q ss_pred CCChhhHHHHHHhhcCC------------------CCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 026637 1 MGRPDLCFDIIHQVLPY------------------NQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHAL 62 (235)
Q Consensus 1 ~G~~~~al~~~~ral~~------------------~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~hal 62 (235)
.|++++|+....+++.. .|.+..++..+|.++...|+|++|+..+++||+++|+++.++..+
T Consensus 24 ~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~ 103 (162)
T 3rkv_A 24 QKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRR 103 (162)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHH
Confidence 48899999999999998 667778999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHchhhhccC
Q 026637 63 CHVLQHDCCFKEAVQFMEECSSTWSSC 89 (235)
Q Consensus 63 ahvl~~~Gr~~egi~~l~~a~~~w~~~ 89 (235)
|.++...|++++|+..++++....|..
T Consensus 104 g~~~~~~g~~~~A~~~~~~al~l~p~~ 130 (162)
T 3rkv_A 104 AKARIAAWKLDEAEEDLKLLLRNHPAA 130 (162)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCGGG
T ss_pred HHHHHHHhcHHHHHHHHHHHHhcCCCC
Confidence 999999999999999999999998874
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.04 E-value=1.2e-09 Score=88.53 Aligned_cols=115 Identities=16% Similarity=-0.003 Sum_probs=96.7
Q ss_pred CCChhhHHHHHHhhcCCCCCCh----------------hHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 026637 1 MGRPDLCFDIIHQVLPYNQQED----------------FIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCH 64 (235)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~----------------~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halah 64 (235)
.|++++|+....+++...|.++ .++..+|.++...|++++|+..+++++.++|+++.++..+|.
T Consensus 51 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 130 (198)
T 2fbn_A 51 KNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGV 130 (198)
T ss_dssp TTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 4899999999999999999887 899999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHchhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHH-HHHHh
Q 026637 65 VLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVL-EIYDN 121 (235)
Q Consensus 65 vl~~~Gr~~egi~~l~~a~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl-~~yd~ 121 (235)
++...|++++|+..++++....|..+ -.+..++.++...| +++++. ..|.+
T Consensus 131 ~~~~~~~~~~A~~~~~~al~~~p~~~-----~~~~~l~~~~~~~~-~~~~~~~~~~~~ 182 (198)
T 2fbn_A 131 ANMYFGFLEEAKENLYKAASLNPNNL-----DIRNSYELCVNKLK-EARKKDKLTFGG 182 (198)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHSTTCH-----HHHHHHHHHHHHHH-HHHC--------
T ss_pred HHHHcccHHHHHHHHHHHHHHCCCcH-----HHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 99999999999999999999987743 23344777777776 666666 34433
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.04 E-value=2.9e-09 Score=95.79 Aligned_cols=124 Identities=8% Similarity=-0.025 Sum_probs=112.3
Q ss_pred CCChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 026637 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME 80 (235)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~ 80 (235)
+|+.++++..+++++...|.++.++..+|..+...|++++|+...+++++++|+++.++..+|.++...|++++|+..++
T Consensus 317 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 396 (514)
T 2gw1_A 317 LQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYD 396 (514)
T ss_dssp TTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HchhhhccCCcchh-HHHHHHHHHHHHh---CCCCHHHHHHHHHhhchh
Q 026637 81 ECSSTWSSCSSFMY-THNWWHVALCYLE---GHSPMRKVLEIYDNHIWK 125 (235)
Q Consensus 81 ~a~~~w~~~~~~l~-~H~~WHlAL~~le---~G~~~deAl~~yd~~i~~ 125 (235)
++....|..+.... ...+..+|.+++. .| ++++|+..|++.+..
T Consensus 397 ~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~A~~~~~~a~~~ 444 (514)
T 2gw1_A 397 LAIELENKLDGIYVGIAPLVGKATLLTRNPTVE-NFIEATNLLEKASKL 444 (514)
T ss_dssp HHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTT-HHHHHHHHHHHHHHH
T ss_pred HHHHhhhccchHHHHHHHHHHHHHHHhhhhhcC-CHHHHHHHHHHHHHh
Confidence 99998888653100 1245569999999 88 999999999999876
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=99.04 E-value=1.4e-09 Score=80.56 Aligned_cols=85 Identities=15% Similarity=0.001 Sum_probs=79.4
Q ss_pred hhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchh
Q 026637 5 DLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSS 84 (235)
Q Consensus 5 ~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~~a~~ 84 (235)
..++..+++++..+|+++.++..+|.++...|++++|++.++++++++|+++.++..+|.++..+|++++|+..++++..
T Consensus 2 ~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 2 QAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp CCHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 35788899999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred hhccC
Q 026637 85 TWSSC 89 (235)
Q Consensus 85 ~w~~~ 89 (235)
..|..
T Consensus 82 ~~~~~ 86 (115)
T 2kat_A 82 AAQSR 86 (115)
T ss_dssp HHHHH
T ss_pred hcccc
Confidence 87663
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=99.04 E-value=4e-09 Score=80.91 Aligned_cols=99 Identities=9% Similarity=0.039 Sum_probs=90.0
Q ss_pred ChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhhccCCcchhHHHHHH
Q 026637 21 EDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWH 100 (235)
Q Consensus 21 ~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~~a~~~w~~~~~~l~~H~~WH 100 (235)
.+..+..+|..+...|++++|...++++++++|+++.++..+|.++...|++++|+..++++....|..+ ..+..
T Consensus 12 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~-----~~~~~ 86 (166)
T 1a17_A 12 RAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYI-----KGYYR 86 (166)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-----HHHHH
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH-----HHHHH
Confidence 3467888999999999999999999999999999999999999999999999999999999999987642 34556
Q ss_pred HHHHHHhCCCCHHHHHHHHHhhchh
Q 026637 101 VALCYLEGHSPMRKVLEIYDNHIWK 125 (235)
Q Consensus 101 lAL~~le~G~~~deAl~~yd~~i~~ 125 (235)
+|.++...| ++++|+..|++.+..
T Consensus 87 ~a~~~~~~~-~~~~A~~~~~~a~~~ 110 (166)
T 1a17_A 87 RAASNMALG-KFRAALRDYETVVKV 110 (166)
T ss_dssp HHHHHHHTT-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHhc-cHHHHHHHHHHHHHh
Confidence 999999998 999999999999876
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.03 E-value=1.3e-09 Score=94.35 Aligned_cols=125 Identities=14% Similarity=0.111 Sum_probs=106.2
Q ss_pred CCChhhHHHHHHhhcCCCC------CChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHH
Q 026637 1 MGRPDLCFDIIHQVLPYNQ------QEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHD------CWSQHALCHVLQH 68 (235)
Q Consensus 1 ~G~~~~al~~~~ral~~~p------~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~d------awA~halahvl~~ 68 (235)
.|+.++++...++++...+ ..+.++..+|.++...|++++|+...++|+++.|+. +.++..+|.++..
T Consensus 50 ~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~ 129 (292)
T 1qqe_A 50 RKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILEN 129 (292)
T ss_dssp TTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 4889999999999998743 235788999999999999999999999999999875 5789999999999
Q ss_pred c-CCHHHHHHHHHHchhhhccCCcch-hHHHHHHHHHHHHhCCCCHHHHHHHHHhhchhh
Q 026637 69 D-CCFKEAVQFMEECSSTWSSCSSFM-YTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE 126 (235)
Q Consensus 69 ~-Gr~~egi~~l~~a~~~w~~~~~~l-~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~~ 126 (235)
+ |++++|+..++++....|..+... ....+-.+|.+++..| +|++|+..|++.+...
T Consensus 130 ~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~ 188 (292)
T 1qqe_A 130 DLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDG-QYIEASDIYSKLIKSS 188 (292)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHTT
T ss_pred hhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHH
Confidence 7 999999999999999988643211 1223456899999998 9999999999999863
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=99.03 E-value=3.6e-09 Score=91.57 Aligned_cols=102 Identities=7% Similarity=-0.068 Sum_probs=92.4
Q ss_pred CCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhhccCCcchhHHHH
Q 026637 19 QQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNW 98 (235)
Q Consensus 19 p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~~a~~~w~~~~~~l~~H~~ 98 (235)
|.++..+..+|..+...|+|++|++.+++|++++|+++.++.++|.++..+|++++|+..++++....|..+ ..+
T Consensus 1 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~-----~~~ 75 (281)
T 2c2l_A 1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSV-----KAH 75 (281)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCH-----HHH
T ss_pred ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCH-----HHH
Confidence 567788999999999999999999999999999999999999999999999999999999999999987632 334
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHhhchhh
Q 026637 99 WHVALCYLEGHSPMRKVLEIYDNHIWKE 126 (235)
Q Consensus 99 WHlAL~~le~G~~~deAl~~yd~~i~~~ 126 (235)
..+|.++...| ++++|+..|.+.+...
T Consensus 76 ~~lg~~~~~~g-~~~~A~~~~~~al~l~ 102 (281)
T 2c2l_A 76 FFLGQCQLEME-SYDEAIANLQRAYSLA 102 (281)
T ss_dssp HHHHHHHHHTT-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcC-CHHHHHHHHHHHHHhC
Confidence 45999999998 9999999999988764
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.02 E-value=4.4e-09 Score=79.18 Aligned_cols=89 Identities=18% Similarity=0.128 Sum_probs=85.2
Q ss_pred CCChhhHHHHHHhhcCCCCCC---hhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 026637 1 MGRPDLCFDIIHQVLPYNQQE---DFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQ 77 (235)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~---~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~ 77 (235)
.|+++++....++++...|++ +.++..+|.++...|++++|+..+++++.++|+++.++..+|.++...|++++|+.
T Consensus 41 ~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~ 120 (148)
T 2dba_A 41 CGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVL 120 (148)
T ss_dssp TTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred hCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHHHHHHcCCHHHHHH
Confidence 489999999999999999987 88999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHchhhhccC
Q 026637 78 FMEECSSTWSSC 89 (235)
Q Consensus 78 ~l~~a~~~w~~~ 89 (235)
.++++....|..
T Consensus 121 ~~~~al~~~p~~ 132 (148)
T 2dba_A 121 DLQRCVSLEPKN 132 (148)
T ss_dssp HHHHHHHHCSSC
T ss_pred HHHHHHHcCCCc
Confidence 999999998774
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=99.02 E-value=3e-09 Score=84.55 Aligned_cols=124 Identities=11% Similarity=0.010 Sum_probs=101.2
Q ss_pred CCChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHh------hCCCCHHHHHHHHHHHHHcCCHHH
Q 026637 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLK------INKHDCWSQHALCHVLQHDCCFKE 74 (235)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~------L~P~dawA~halahvl~~~Gr~~e 74 (235)
.|+.+++...++.+....+..+.++..+|..+...|++++|+..++++++ ..|..+.++..+|.++..+|++++
T Consensus 5 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 84 (203)
T 3gw4_A 5 AHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDA 84 (203)
T ss_dssp --CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred cccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHH
Confidence 37888888844444333336788999999999999999999999999999 677788999999999999999999
Q ss_pred HHHHHHHchhhhccCC-cc-hhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026637 75 AVQFMEECSSTWSSCS-SF-MYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 125 (235)
Q Consensus 75 gi~~l~~a~~~w~~~~-~~-l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~ 125 (235)
|+..++++.......+ .. .....+..+|..++..| ++++|++.|++.+..
T Consensus 85 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~ 136 (203)
T 3gw4_A 85 ARRCFLEERELLASLPEDPLAASANAYEVATVALHFG-DLAGARQEYEKSLVY 136 (203)
T ss_dssp HHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHH
Confidence 9999999988754433 11 23456667999999998 999999999988765
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.02 E-value=7.5e-09 Score=91.67 Aligned_cols=199 Identities=11% Similarity=0.135 Sum_probs=132.2
Q ss_pred CCChhhHHHHHHhhcCCCCC-------ChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCH------HHHHHHHHHHH
Q 026637 1 MGRPDLCFDIIHQVLPYNQQ-------EDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDC------WSQHALCHVLQ 67 (235)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~-------~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~da------wA~halahvl~ 67 (235)
+|+.+.++...++++...+. ...++..+|.++...|++++|++.+++|+++.|+.. .+++++|.++.
T Consensus 156 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~ 235 (383)
T 3ulq_A 156 MKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKN 235 (383)
T ss_dssp TTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence 58899999999999986432 346899999999999999999999999999977654 69999999999
Q ss_pred HcCCHHHHHHHHHHchhhhccCCc-chhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchhhhcCCCCCchHhHhHHHHHHH
Q 026637 68 HDCCFKEAVQFMEECSSTWSSCSS-FMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNALGLLL 146 (235)
Q Consensus 68 ~~Gr~~egi~~l~~a~~~w~~~~~-~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~~~~~~~~~~~~~~~da~sLL~ 146 (235)
.+|++++|+..++++....+..+. ......+-.+|.+++..| ++++|+..|++.+.... +.+ .. ........|-
T Consensus 236 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~~-~~~--~~-~~~~~~~~l~ 310 (383)
T 3ulq_A 236 SQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLG-KIDKAHEYHSKGMAYSQ-KAG--DV-IYLSEFEFLK 310 (383)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHH-HHT--CH-HHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHH-HcC--CH-HHHHHHHHHH
Confidence 999999999999999885433221 112445567999999998 99999999999987642 111 11 1112223333
Q ss_pred HHHhcCcccccccchHHHHHHHHhhhcchhcchhhHHHHHHHhcCCCchHHHHHHHHHHHH
Q 026637 147 RVYVRGELDVFGNRLKVLADCVADQANWYLECHLDLLILWALANTGEVSKAEDLLKGLKSR 207 (235)
Q Consensus 147 Rl~l~G~~~~~g~rw~~la~~~~~~~~~~~~~F~d~H~~~al~~ag~~~~~~~ll~~~~~~ 207 (235)
.+...-.+ .+..+...+........+...-.-......+...|+.+.+....+..-..
T Consensus 311 ~~~~~~~~---~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~ 368 (383)
T 3ulq_A 311 SLYLSGPD---EEAIQGFFDFLESKMLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQV 368 (383)
T ss_dssp HHHTSSCC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhCCCc---HHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 33332111 02244444444433222221212223455566677777666655544443
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.99 E-value=3.1e-08 Score=86.07 Aligned_cols=204 Identities=12% Similarity=0.027 Sum_probs=137.1
Q ss_pred CCChhhHHHHHHhhcCCCCCCh----hHHHHHHHHHHHhCCHHHHHHHHHHHHhh------CCCCHHHHHHHHHHHHHcC
Q 026637 1 MGRPDLCFDIIHQVLPYNQQED----FIFGILAFSLLELGQMSDAEEAAKKGLKI------NKHDCWSQHALCHVLQHDC 70 (235)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~----~~~g~~Af~L~e~g~~~~Ae~~arrAL~L------~P~dawA~halahvl~~~G 70 (235)
.|++++++...++++...|+++ .++..+|..+...|++++|+..+++|+++ .|..+.++..+|.++...|
T Consensus 22 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 101 (406)
T 3sf4_A 22 SGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLG 101 (406)
T ss_dssp TTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred hccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHcC
Confidence 4899999999999999999885 57889999999999999999999999998 6677899999999999999
Q ss_pred CHHHHHHHHHHchhhhccCCc-chhHHHHHHHHHHHHhCCCC--------------------HHHHHHHHHhhchhhhcC
Q 026637 71 CFKEAVQFMEECSSTWSSCSS-FMYTHNWWHVALCYLEGHSP--------------------MRKVLEIYDNHIWKELEK 129 (235)
Q Consensus 71 r~~egi~~l~~a~~~w~~~~~-~l~~H~~WHlAL~~le~G~~--------------------~deAl~~yd~~i~~~~~~ 129 (235)
++++|+..++++....+..+. ......+..+|.++...| + +++|++.|++.+.... +
T Consensus 102 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~-~ 179 (406)
T 3sf4_A 102 NFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKG-KSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVT-A 179 (406)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHH-HTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHH-H
T ss_pred CHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcC-CcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHH-h
Confidence 999999999999887765332 112345667999999998 9 9999999999887532 1
Q ss_pred CCCCchHhHhHHHHHHHHHHh-cCcccccccchHHHHHHHHhhhcchhcchhhHHHHHHHhcCCCchHHHHHHHHHHHHh
Q 026637 130 PDAVHPEVYLNALGLLLRVYV-RGELDVFGNRLKVLADCVADQANWYLECHLDLLILWALANTGEVSKAEDLLKGLKSRH 208 (235)
Q Consensus 130 ~~~~~~~~~~da~sLL~Rl~l-~G~~~~~g~rw~~la~~~~~~~~~~~~~F~d~H~~~al~~ag~~~~~~~ll~~~~~~~ 208 (235)
.+ .......+...+-.+.. .|....--.-.+..........+.......-......+...|+.+.+...++..-...
T Consensus 180 ~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 257 (406)
T 3sf4_A 180 LG--DRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLA 257 (406)
T ss_dssp TT--CHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred cc--CcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Confidence 11 11122222222222222 1221000112222222222211122212223344566778888888877766555443
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.98 E-value=5e-10 Score=83.72 Aligned_cols=87 Identities=11% Similarity=0.019 Sum_probs=74.9
Q ss_pred HhCCHHHHHHHHHHHHhh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhhccCCcchhHHHHHHHHHHHHhCCC
Q 026637 34 ELGQMSDAEEAAKKGLKI---NKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHS 110 (235)
Q Consensus 34 e~g~~~~Ae~~arrAL~L---~P~dawA~halahvl~~~Gr~~egi~~l~~a~~~w~~~~~~l~~H~~WHlAL~~le~G~ 110 (235)
..|++++|+..+++|+++ +|+++.++..+|.++..+|++++|+..++++....|..+ ..+..+|.++...|
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~-----~~~~~l~~~~~~~g- 75 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQ-----ALRVFYAMVLYNLG- 75 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-----HHHHHHHHHHHHHT-
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCch-----HHHHHHHHHHHHcC-
Confidence 468999999999999999 699999999999999999999999999999999998843 34445999999998
Q ss_pred CHHHHHHHHHhhchhh
Q 026637 111 PMRKVLEIYDNHIWKE 126 (235)
Q Consensus 111 ~~deAl~~yd~~i~~~ 126 (235)
++++|++.|++.+...
T Consensus 76 ~~~~A~~~~~~al~~~ 91 (117)
T 3k9i_A 76 RYEQGVELLLKIIAET 91 (117)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC
Confidence 9999999999999874
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.98 E-value=1.2e-09 Score=91.78 Aligned_cols=124 Identities=13% Similarity=0.094 Sum_probs=105.5
Q ss_pred CCChhhHHHHHHhhcCCC--------CCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhh--------CCCCHHHHHHHHH
Q 026637 1 MGRPDLCFDIIHQVLPYN--------QQEDFIFGILAFSLLELGQMSDAEEAAKKGLKI--------NKHDCWSQHALCH 64 (235)
Q Consensus 1 ~G~~~~al~~~~ral~~~--------p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L--------~P~dawA~halah 64 (235)
+|+.++++..+++++... |....++..+|.++...|++++|++.+++++.+ +|..+.++..+|.
T Consensus 124 ~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~ 203 (311)
T 3nf1_A 124 RGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLAS 203 (311)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 588999999999999763 667788999999999999999999999999999 8888999999999
Q ss_pred HHHHcCCHHHHHHHHHHchhhhccC--------------------------------------------CcchhHHHHHH
Q 026637 65 VLQHDCCFKEAVQFMEECSSTWSSC--------------------------------------------SSFMYTHNWWH 100 (235)
Q Consensus 65 vl~~~Gr~~egi~~l~~a~~~w~~~--------------------------------------------~~~l~~H~~WH 100 (235)
++..+|++++|+..++++....+.. ........+..
T Consensus 204 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 283 (311)
T 3nf1_A 204 CYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKN 283 (311)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHH
Confidence 9999999999999999998754320 00112345667
Q ss_pred HHHHHHhCCCCHHHHHHHHHhhchh
Q 026637 101 VALCYLEGHSPMRKVLEIYDNHIWK 125 (235)
Q Consensus 101 lAL~~le~G~~~deAl~~yd~~i~~ 125 (235)
+|.++...| ++++|++.|++.+..
T Consensus 284 la~~~~~~g-~~~~A~~~~~~al~l 307 (311)
T 3nf1_A 284 LGALYRRQG-KFEAAETLEEAAMRS 307 (311)
T ss_dssp HHHHHHHHT-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHCC-CHHHHHHHHHHHHHH
Confidence 999999998 999999999998876
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.97 E-value=6.7e-10 Score=89.95 Aligned_cols=99 Identities=8% Similarity=0.007 Sum_probs=89.3
Q ss_pred ChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCH----------------HHHHHHHHHHHHcCCHHHHHHHHHHchh
Q 026637 21 EDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDC----------------WSQHALCHVLQHDCCFKEAVQFMEECSS 84 (235)
Q Consensus 21 ~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~da----------------wA~halahvl~~~Gr~~egi~~l~~a~~ 84 (235)
....+...|..+...|+|++|+..+++++.+.|+++ .++..+|.++...|++++|+..++++..
T Consensus 37 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 116 (198)
T 2fbn_A 37 SAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLK 116 (198)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 456788899999999999999999999999999998 9999999999999999999999999999
Q ss_pred hhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026637 85 TWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 125 (235)
Q Consensus 85 ~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~ 125 (235)
..|..+ ..+..+|.+++..| ++++|+..|.+.+..
T Consensus 117 ~~p~~~-----~~~~~lg~~~~~~~-~~~~A~~~~~~al~~ 151 (198)
T 2fbn_A 117 IDKNNV-----KALYKLGVANMYFG-FLEEAKENLYKAASL 151 (198)
T ss_dssp HSTTCH-----HHHHHHHHHHHHHT-CHHHHHHHHHHHHHH
T ss_pred hCcccH-----HHHHHHHHHHHHcc-cHHHHHHHHHHHHHH
Confidence 987642 34446999999998 999999999999876
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=98.97 E-value=1.3e-08 Score=89.59 Aligned_cols=204 Identities=12% Similarity=0.029 Sum_probs=136.6
Q ss_pred CCChhhHHHHHHhhcCC------CCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhh------CCCCHHHHHHHHHHHHH
Q 026637 1 MGRPDLCFDIIHQVLPY------NQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKI------NKHDCWSQHALCHVLQH 68 (235)
Q Consensus 1 ~G~~~~al~~~~ral~~------~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L------~P~dawA~halahvl~~ 68 (235)
+|+.++++..+++++.. .|....++..+|..+...|++++|++.+++++++ .|..+.++..+|.++..
T Consensus 99 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~ 178 (411)
T 4a1s_A 99 LGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHA 178 (411)
T ss_dssp HTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHH
Confidence 38899999999999886 4667789999999999999999999999999999 78889999999999999
Q ss_pred cCC-----------------HHHHHHHHHHchhhhccCCc-chhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchhhhcCC
Q 026637 69 DCC-----------------FKEAVQFMEECSSTWSSCSS-FMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKELEKP 130 (235)
Q Consensus 69 ~Gr-----------------~~egi~~l~~a~~~w~~~~~-~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~~~~~~ 130 (235)
+|+ +++++..++++....+..+. ......+..+|.+++..| ++++|+..|++.+.... +.
T Consensus 179 ~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~-~~ 256 (411)
T 4a1s_A 179 KGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLG-DFQAAIEHHQERLRIAR-EF 256 (411)
T ss_dssp HHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHH-HH
T ss_pred cCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHHHH-hc
Confidence 999 99999999998766543221 112346667999999998 99999999999887642 11
Q ss_pred CCCchHhHhHHHHHHHHHHhc-CcccccccchHHHHHHHHhhhcchhcchhhHHHHHHHhcCCCchHHHHHHHHHHHHh
Q 026637 131 DAVHPEVYLNALGLLLRVYVR-GELDVFGNRLKVLADCVADQANWYLECHLDLLILWALANTGEVSKAEDLLKGLKSRH 208 (235)
Q Consensus 131 ~~~~~~~~~da~sLL~Rl~l~-G~~~~~g~rw~~la~~~~~~~~~~~~~F~d~H~~~al~~ag~~~~~~~ll~~~~~~~ 208 (235)
+ .......+...+-++.+. |....--.-.+..........+.......-......+...|+.+.+.+.++..-...
T Consensus 257 ~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 333 (411)
T 4a1s_A 257 G--DRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIA 333 (411)
T ss_dssp T--CHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred C--CcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 1 111122233333333322 211000011222222222111111212223344566778899888887776655544
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=98.97 E-value=4.8e-08 Score=85.64 Aligned_cols=124 Identities=9% Similarity=0.022 Sum_probs=98.1
Q ss_pred CCChhhHHHHHHhhcCCC--------CCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCC-----HHHHHHHHHHHH
Q 026637 1 MGRPDLCFDIIHQVLPYN--------QQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHD-----CWSQHALCHVLQ 67 (235)
Q Consensus 1 ~G~~~~al~~~~ral~~~--------p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~d-----awA~halahvl~ 67 (235)
.|++++++..+++++... |....++.++|.++.+.|++++|++.+++++++.|.. ..++..++.++.
T Consensus 106 ~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~ 185 (373)
T 1hz4_A 106 QGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSL 185 (373)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHH
Confidence 489999999999998754 3355788889999999999999999999999998863 467889999999
Q ss_pred HcCCHHHHHHHHHHchhhhccCCcchhHHHHHH--HHHHHHhCCCCHHHHHHHHHhhchh
Q 026637 68 HDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWH--VALCYLEGHSPMRKVLEIYDNHIWK 125 (235)
Q Consensus 68 ~~Gr~~egi~~l~~a~~~w~~~~~~l~~H~~WH--lAL~~le~G~~~deAl~~yd~~i~~ 125 (235)
.+|++++|+..++++....+..+.......... .+..++..| ++++|...+++.+.+
T Consensus 186 ~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~A~~~~~~a~~~ 244 (373)
T 1hz4_A 186 ARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTG-DKAAAANWLRHTAKP 244 (373)
T ss_dssp HHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHSCCC
T ss_pred HcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCC-CHHHHHHHHHhCCCC
Confidence 999999999999999887655321101111111 233467888 999999999998876
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.96 E-value=4.8e-10 Score=81.07 Aligned_cols=100 Identities=10% Similarity=-0.018 Sum_probs=82.5
Q ss_pred ChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhhccCCcc-hhHHHHH
Q 026637 21 EDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSF-MYTHNWW 99 (235)
Q Consensus 21 ~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~~a~~~w~~~~~~-l~~H~~W 99 (235)
++..+..+|..+...|++++|++.+++|++++|+++.++..+|.++..+|++++|+..++++....|..+.. .....+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 356778899999999999999999999999999999999999999999999999999999999998874221 1123445
Q ss_pred HHHHHHHhCCCCHHHHHHHHHh
Q 026637 100 HVALCYLEGHSPMRKVLEIYDN 121 (235)
Q Consensus 100 HlAL~~le~G~~~deAl~~yd~ 121 (235)
.++.++...| +++++++.|++
T Consensus 83 ~~~~~~~~~~-~~~~a~~~~~~ 103 (111)
T 2l6j_A 83 RLELAQGAVG-SVQIPVVEVDE 103 (111)
T ss_dssp HHHHHHHHHH-CCCCCSSSSSS
T ss_pred HHHHHHHHHH-hHhhhHhHHHH
Confidence 6788887777 77777766543
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=98.95 E-value=2e-07 Score=78.26 Aligned_cols=113 Identities=11% Similarity=0.012 Sum_probs=93.4
Q ss_pred CCChhhHHHHHHhhcCCCCCChhHHHHHHHHHHH----hCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----cCCH
Q 026637 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLE----LGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQH----DCCF 72 (235)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e----~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~----~Gr~ 72 (235)
.|+.++++...++++. |+++.++..+|..+.. .|++++|.+.+++|++++ ++.++..+|.++.. .|++
T Consensus 19 ~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~ 94 (273)
T 1ouv_A 19 EKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGCHLLGNLYYSGQGVSQNT 94 (273)
T ss_dssp TTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCH
T ss_pred CCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHhCCCCcccCH
Confidence 3788888889988887 7788888889999988 999999999999998885 88899999999998 9999
Q ss_pred HHHHHHHHHchhhhccCCcchhHHHHHHHHHHHHh----CCCCHHHHHHHHHhhchh
Q 026637 73 KEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLE----GHSPMRKVLEIYDNHIWK 125 (235)
Q Consensus 73 ~egi~~l~~a~~~w~~~~~~l~~H~~WHlAL~~le----~G~~~deAl~~yd~~i~~ 125 (235)
++|+.+++++.... + ...+..+|.++.. .| ++++|++.|++.+..
T Consensus 95 ~~A~~~~~~a~~~~---~----~~a~~~lg~~~~~~~~~~~-~~~~A~~~~~~a~~~ 143 (273)
T 1ouv_A 95 NKALQYYSKACDLK---Y----AEGCASLGGIYHDGKVVTR-DFKKAVEYFTKACDL 143 (273)
T ss_dssp HHHHHHHHHHHHTT---C----HHHHHHHHHHHHHCSSSCC-CHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcC---C----ccHHHHHHHHHHcCCCccc-CHHHHHHHHHHHHhc
Confidence 99999999887762 1 1233358888887 77 899999999888865
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.95 E-value=5.2e-10 Score=91.60 Aligned_cols=87 Identities=15% Similarity=0.040 Sum_probs=80.2
Q ss_pred CChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCH----------HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC-
Q 026637 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQM----------SDAEEAAKKGLKINKHDCWSQHALCHVLQHDC- 70 (235)
Q Consensus 2 G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~----------~~Ae~~arrAL~L~P~dawA~halahvl~~~G- 70 (235)
+++++++...++++..+|+++.++..+|.+|.+.+++ ++|+..+++||+++|+++.++.++|.++..+|
T Consensus 16 ~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~ 95 (158)
T 1zu2_A 16 LLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAF 95 (158)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcc
Confidence 4578899999999999999999999999999999875 59999999999999999999999999999885
Q ss_pred ----------CHHHHHHHHHHchhhhcc
Q 026637 71 ----------CFKEAVQFMEECSSTWSS 88 (235)
Q Consensus 71 ----------r~~egi~~l~~a~~~w~~ 88 (235)
++++|+..++++....|.
T Consensus 96 l~P~~~~a~g~~~eA~~~~~kAl~l~P~ 123 (158)
T 1zu2_A 96 LTPDETEAKHNFDLATQFFQQAVDEQPD 123 (158)
T ss_dssp HCCCHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred cCcchhhhhccHHHHHHHHHHHHHhCCC
Confidence 899999999999999877
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.94 E-value=1.7e-08 Score=73.45 Aligned_cols=97 Identities=13% Similarity=0.222 Sum_probs=86.5
Q ss_pred hHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhhccCCcchhHHHHHHHH
Q 026637 23 FIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVA 102 (235)
Q Consensus 23 ~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~~a~~~w~~~~~~l~~H~~WHlA 102 (235)
.++..+|..+...|++++|+...++++.++|+++.++..++.++...|++++++..+++.....|..+ ..+..++
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~-----~~~~~l~ 76 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSA-----EAWYNLG 76 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH-----HHHHHHH
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCch-----HHHHHHH
Confidence 35677888999999999999999999999999999999999999999999999999999998876632 3445689
Q ss_pred HHHHhCCCCHHHHHHHHHhhchh
Q 026637 103 LCYLEGHSPMRKVLEIYDNHIWK 125 (235)
Q Consensus 103 L~~le~G~~~deAl~~yd~~i~~ 125 (235)
..+...| ++++|+..|++.+..
T Consensus 77 ~~~~~~~-~~~~A~~~~~~~~~~ 98 (136)
T 2fo7_A 77 NAYYKQG-DYDEAIEYYQKALEL 98 (136)
T ss_dssp HHHHTTT-CHHHHHHHHHHHHHH
T ss_pred HHHHHhc-CHHHHHHHHHHHHHh
Confidence 9999998 999999999998875
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.94 E-value=3.9e-09 Score=97.90 Aligned_cols=119 Identities=16% Similarity=0.098 Sum_probs=101.3
Q ss_pred CCChhhHHHHHHhhcCCCCCC---------------hhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 026637 1 MGRPDLCFDIIHQVLPYNQQE---------------DFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHV 65 (235)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~---------------~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahv 65 (235)
.|++++|+...++++...|.+ ..++.++|.++...|+|++|+..+++||+++|+++.++..+|.+
T Consensus 281 ~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a 360 (457)
T 1kt0_A 281 GGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEA 360 (457)
T ss_dssp TTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHH
Confidence 489999999999999999988 58999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHchhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHH-HHHHhhchh
Q 026637 66 LQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVL-EIYDNHIWK 125 (235)
Q Consensus 66 l~~~Gr~~egi~~l~~a~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl-~~yd~~i~~ 125 (235)
+..+|++++|+..++++....|... -.+..++.++...| +++++. .+|.+.+..
T Consensus 361 ~~~~g~~~~A~~~~~~al~l~P~~~-----~a~~~l~~~~~~~~-~~~~a~~~~~~~~f~k 415 (457)
T 1kt0_A 361 QLLMNEFESAKGDFEKVLEVNPQNK-----AARLQISMCQKKAK-EHNERDRRIYANMFKK 415 (457)
T ss_dssp HHHTTCHHHHHHHHHHHHTTC---------CHHHHHHHHHHHHH-HHHHHHHHHHHHC---
T ss_pred HHHccCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHHH-HHHHHHHHHHHHHHhh
Confidence 9999999999999999999988743 24556888888887 788776 455555443
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.92 E-value=2.6e-08 Score=86.55 Aligned_cols=206 Identities=11% Similarity=-0.017 Sum_probs=132.5
Q ss_pred CCChhhHHHHHHhhcCCCCCC------hhHHHHHHHHHHHhCC--------------------HHHHHHHHHHHHhh---
Q 026637 1 MGRPDLCFDIIHQVLPYNQQE------DFIFGILAFSLLELGQ--------------------MSDAEEAAKKGLKI--- 51 (235)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~------~~~~g~~Af~L~e~g~--------------------~~~Ae~~arrAL~L--- 51 (235)
+|+.++++...++++...|.. ..++..+|.++...|+ +++|++.+++++.+
T Consensus 100 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~ 179 (406)
T 3sf4_A 100 LGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTA 179 (406)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHh
Confidence 488888999888888875532 4588888999999999 99999999999988
Q ss_pred ---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhhccCCc-chhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchhhh
Q 026637 52 ---NKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSS-FMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKEL 127 (235)
Q Consensus 52 ---~P~dawA~halahvl~~~Gr~~egi~~l~~a~~~w~~~~~-~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~~~ 127 (235)
.|..+.++..+|.++..+|++++|+..++++....+..+. ......+..+|.+++..| ++++|+..|++.+....
T Consensus 180 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~ 258 (406)
T 3sf4_A 180 LGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLG-EFETASEYYKKTLLLAR 258 (406)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHH
T ss_pred ccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHHHH
Confidence 6666788999999999999999999999999887766442 112235566899999998 89999999999886632
Q ss_pred cCCCCCchHhHhHHHHHHHHHHhc-CcccccccchHHHHHHHHhhhcchhcchhhHHHHHHHhcCCCchHHHHHHHHHHH
Q 026637 128 EKPDAVHPEVYLNALGLLLRVYVR-GELDVFGNRLKVLADCVADQANWYLECHLDLLILWALANTGEVSKAEDLLKGLKS 206 (235)
Q Consensus 128 ~~~~~~~~~~~~da~sLL~Rl~l~-G~~~~~g~rw~~la~~~~~~~~~~~~~F~d~H~~~al~~ag~~~~~~~ll~~~~~ 206 (235)
+.+ .......+...+-++... |....--.-.+..........+.......-......+...|+.+.+.+.++..-.
T Consensus 259 -~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 335 (406)
T 3sf4_A 259 -QLK--DRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 335 (406)
T ss_dssp -HTT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred -hCc--CchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 111 122223333333333322 2210000111222222111111111122233445666778898888887776666
Q ss_pred Hhhc
Q 026637 207 RHSK 210 (235)
Q Consensus 207 ~~~~ 210 (235)
....
T Consensus 336 ~~~~ 339 (406)
T 3sf4_A 336 ISRE 339 (406)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5544
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=98.92 E-value=8.8e-09 Score=91.22 Aligned_cols=124 Identities=9% Similarity=0.061 Sum_probs=105.3
Q ss_pred CCChhhHHHHHHhhcCC---CC---CChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCC-------CCHHHHHHHHHHHH
Q 026637 1 MGRPDLCFDIIHQVLPY---NQ---QEDFIFGILAFSLLELGQMSDAEEAAKKGLKINK-------HDCWSQHALCHVLQ 67 (235)
Q Consensus 1 ~G~~~~al~~~~ral~~---~p---~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P-------~dawA~halahvl~ 67 (235)
.|+.++|+...++++.. .+ ..+.++..+|.++...|++++|...+++|+++.| ..+.++..+|.++.
T Consensus 116 ~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~ 195 (383)
T 3ulq_A 116 QREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFL 195 (383)
T ss_dssp TTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHH
Confidence 48999999999999986 23 3558999999999999999999999999999944 44579999999999
Q ss_pred HcCCHHHHHHHHHHchhhhccCCc-chhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026637 68 HDCCFKEAVQFMEECSSTWSSCSS-FMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 125 (235)
Q Consensus 68 ~~Gr~~egi~~l~~a~~~w~~~~~-~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~ 125 (235)
.+|++++|+..++++....+..+. ......+..+|.++...| ++++|++.|.+.+.-
T Consensus 196 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g-~~~~A~~~~~~al~~ 253 (383)
T 3ulq_A 196 DLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQS-QYEDAIPYFKRAIAV 253 (383)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHH
Confidence 999999999999999887665432 222335667999999998 999999999999985
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.92 E-value=9.6e-09 Score=80.44 Aligned_cols=98 Identities=9% Similarity=-0.016 Sum_probs=88.3
Q ss_pred hhHHHHHHHHHHHhCCHHHHHHHHHHHHhh------------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHch
Q 026637 22 DFIFGILAFSLLELGQMSDAEEAAKKGLKI------------------NKHDCWSQHALCHVLQHDCCFKEAVQFMEECS 83 (235)
Q Consensus 22 ~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L------------------~P~dawA~halahvl~~~Gr~~egi~~l~~a~ 83 (235)
...+...|..+...|+|++|+..+++|+.+ +|.++.++.++|.++...|++++|+..+++++
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 456778889999999999999999999999 88888999999999999999999999999999
Q ss_pred hhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026637 84 STWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 125 (235)
Q Consensus 84 ~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~ 125 (235)
...|..+ ..+..+|.+++..| ++++|+..|.+.+..
T Consensus 91 ~~~p~~~-----~a~~~~g~~~~~~g-~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 91 KREETNE-----KALFRRAKARIAAW-KLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHSTTCH-----HHHHHHHHHHHHTT-CHHHHHHHHHHHHHH
T ss_pred hcCCcch-----HHHHHHHHHHHHHh-cHHHHHHHHHHHHhc
Confidence 9987742 34456999999998 999999999999887
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=98.91 E-value=3.5e-07 Score=76.74 Aligned_cols=178 Identities=12% Similarity=-0.023 Sum_probs=128.7
Q ss_pred CCChhhHHHHHHhhcCCCCCChhHHHHHHHHHHH----hCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----cCCH
Q 026637 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLE----LGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQH----DCCF 72 (235)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e----~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~----~Gr~ 72 (235)
.|+.++++...++++... ++.++..+|..+.. .+++++|++..++|+++ +++.++..+|.++.. .|++
T Consensus 55 ~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~~~~~~~ 130 (273)
T 1ouv_A 55 EKNLKKAASFYAKACDLN--YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDL--KYAEGCASLGGIYHDGKVVTRDF 130 (273)
T ss_dssp CCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCH
T ss_pred CCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHc--CCccHHHHHHHHHHcCCCcccCH
Confidence 478899999999999874 88999999999999 99999999999999998 499999999999999 9999
Q ss_pred HHHHHHHHHchhhhccCCcchhHHHHHHHHHHHHh----CCCCHHHHHHHHHhhchhhhcCCCCCchHhHhHHHHHHHHH
Q 026637 73 KEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLE----GHSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNALGLLLRV 148 (235)
Q Consensus 73 ~egi~~l~~a~~~w~~~~~~l~~H~~WHlAL~~le----~G~~~deAl~~yd~~i~~~~~~~~~~~~~~~~da~sLL~Rl 148 (235)
++|+.+++++....+. ..+..++.++.. .+ ++++|+..|++.+... . .++...|-.+
T Consensus 131 ~~A~~~~~~a~~~~~~-------~a~~~lg~~~~~~~~~~~-~~~~A~~~~~~a~~~~-------~----~~a~~~lg~~ 191 (273)
T 1ouv_A 131 KKAVEYFTKACDLNDG-------DGCTILGSLYDAGRGTPK-DLKKALASYDKACDLK-------D----SPGCFNAGNM 191 (273)
T ss_dssp HHHHHHHHHHHHTTCH-------HHHHHHHHHHHHTSSSCC-CHHHHHHHHHHHHHTT-------C----HHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcH-------HHHHHHHHHHHcCCCCCC-CHHHHHHHHHHHHHCC-------C----HHHHHHHHHH
Confidence 9999999999886421 233358999987 77 9999999999988652 1 2333444444
Q ss_pred HhcCcccccccchHHHHHHHHhhhcchhcchhhHHHHHHHhc----CCCchHHHHHHHHH
Q 026637 149 YVRGELDVFGNRLKVLADCVADQANWYLECHLDLLILWALAN----TGEVSKAEDLLKGL 204 (235)
Q Consensus 149 ~l~G~~~~~g~rw~~la~~~~~~~~~~~~~F~d~H~~~al~~----ag~~~~~~~ll~~~ 204 (235)
...|..+ ..+.+.-...+..-..... +-.-......+.. .++.+.+.+.++..
T Consensus 192 ~~~g~~~--~~~~~~A~~~~~~a~~~~~-~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a 248 (273)
T 1ouv_A 192 YHHGEGA--TKNFKEALARYSKACELEN-GGGCFNLGAMQYNGEGVTRNEKQAIENFKKG 248 (273)
T ss_dssp HHHTCSS--CCCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHH
T ss_pred HHcCCCC--CccHHHHHHHHHHHHhCCC-HHHHHHHHHHHHcCCCcccCHHHHHHHHHHH
Confidence 5556542 3456555555543222211 2222333444554 66776666555443
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=98.91 E-value=6e-09 Score=76.33 Aligned_cols=72 Identities=11% Similarity=-0.026 Sum_probs=66.3
Q ss_pred CCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhhccC
Q 026637 18 NQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSC 89 (235)
Q Consensus 18 ~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~~a~~~w~~~ 89 (235)
+|+++.++..+|.++...|++++|++.++++++++|+++.++..+|.++...|++++|+..++++...-+..
T Consensus 3 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~ 74 (100)
T 3ma5_A 3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREE 74 (100)
T ss_dssp --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcC
Confidence 689999999999999999999999999999999999999999999999999999999999999998876553
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.89 E-value=9.8e-10 Score=101.95 Aligned_cols=113 Identities=8% Similarity=-0.075 Sum_probs=98.4
Q ss_pred HHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCC---------------HHHHHHHHHHHHHcCC
Q 026637 7 CFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHD---------------CWSQHALCHVLQHDCC 71 (235)
Q Consensus 7 al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~d---------------awA~halahvl~~~Gr 71 (235)
++...++++...|.++..+..+|..+...|+|++|+..+++|++++|++ +.++.++|.++..+|+
T Consensus 253 A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~ 332 (457)
T 1kt0_A 253 AKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLRE 332 (457)
T ss_dssp CCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred CcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3333444445566778899999999999999999999999999999999 7999999999999999
Q ss_pred HHHHHHHHHHchhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026637 72 FKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 125 (235)
Q Consensus 72 ~~egi~~l~~a~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~ 125 (235)
+++|+..++++....|..+ ..+..+|.+++.+| ++++|+..|++.+..
T Consensus 333 ~~~A~~~~~~al~~~p~~~-----~a~~~~g~a~~~~g-~~~~A~~~~~~al~l 380 (457)
T 1kt0_A 333 YTKAVECCDKALGLDSANE-----KGLYRRGEAQLLMN-EFESAKGDFEKVLEV 380 (457)
T ss_dssp HHHHHHHHHHHHHHSTTCH-----HHHHHHHHHHHHTT-CHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcCCccH-----HHHHHHHHHHHHcc-CHHHHHHHHHHHHHh
Confidence 9999999999999987732 34456999999998 999999999999876
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.89 E-value=7.4e-09 Score=90.11 Aligned_cols=121 Identities=9% Similarity=0.029 Sum_probs=99.1
Q ss_pred CCChhhHHHHHHhhcCCCCC------ChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHH
Q 026637 1 MGRPDLCFDIIHQVLPYNQQ------EDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHD------CWSQHALCHVLQH 68 (235)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~------~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~d------awA~halahvl~~ 68 (235)
+|++++++...++++...+. ...++..+|.++.. |++++|++.+++|+++.|.+ +.++..+|.++..
T Consensus 89 ~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~ 167 (307)
T 2ifu_A 89 LQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVR 167 (307)
T ss_dssp TTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHH
Confidence 48899999999999887432 23678888999988 99999999999999998875 6788999999999
Q ss_pred cCCHHHHHHHHHHchhhhccCCcc-hhHHHHHHHHHHHHhCCCCHHHHHHHHHhhc
Q 026637 69 DCCFKEAVQFMEECSSTWSSCSSF-MYTHNWWHVALCYLEGHSPMRKVLEIYDNHI 123 (235)
Q Consensus 69 ~Gr~~egi~~l~~a~~~w~~~~~~-l~~H~~WHlAL~~le~G~~~deAl~~yd~~i 123 (235)
+|++++|+..++++....+..+.. .....+..++++++..| ++++|+..|++.+
T Consensus 168 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g-~~~~A~~~~~~al 222 (307)
T 2ifu_A 168 QQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRA-DYVAAQKCVRESY 222 (307)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHh
Confidence 999999999999998887764421 11224556888888888 8999999999988
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.88 E-value=4.1e-08 Score=82.16 Aligned_cols=204 Identities=14% Similarity=0.047 Sum_probs=133.6
Q ss_pred CCChhhHHHHHHhhcCC------CCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHH
Q 026637 1 MGRPDLCFDIIHQVLPY------NQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHD------CWSQHALCHVLQH 68 (235)
Q Consensus 1 ~G~~~~al~~~~ral~~------~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~d------awA~halahvl~~ 68 (235)
.|++++++...++++.. .|....++..+|..+...|++++|++.+++++++.|.. +.++..++.++..
T Consensus 56 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~ 135 (338)
T 3ro2_A 56 LHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHA 135 (338)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHH
Confidence 48899999999998876 34556789999999999999999999999999998765 4499999999999
Q ss_pred cCC--------------------HHHHHHHHHHchhhhccCCc-chhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchhhh
Q 026637 69 DCC--------------------FKEAVQFMEECSSTWSSCSS-FMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKEL 127 (235)
Q Consensus 69 ~Gr--------------------~~egi~~l~~a~~~w~~~~~-~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~~~ 127 (235)
.|+ +++++..++++....+..+. ......+..+|.+++..| ++++|+..|++.+....
T Consensus 136 ~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~a~~~~~ 214 (338)
T 3ro2_A 136 KGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLG-NFRDAVIAHEQRLLIAK 214 (338)
T ss_dssp HHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHH
T ss_pred cCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHH
Confidence 999 99999999998765433221 112345667999999998 99999999999887631
Q ss_pred cCCCCCchHhHhHHHHHHHHHHh-cCcccccccchHHHHHHHHhhhcchhcchhhHHHHHHHhcCCCchHHHHHHHHHHH
Q 026637 128 EKPDAVHPEVYLNALGLLLRVYV-RGELDVFGNRLKVLADCVADQANWYLECHLDLLILWALANTGEVSKAEDLLKGLKS 206 (235)
Q Consensus 128 ~~~~~~~~~~~~da~sLL~Rl~l-~G~~~~~g~rw~~la~~~~~~~~~~~~~F~d~H~~~al~~ag~~~~~~~ll~~~~~ 206 (235)
+.+ .......+...+-++.+ .|.....-.-.+...+......+.......-......+...|+.+.+.+.++..-.
T Consensus 215 -~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 291 (338)
T 3ro2_A 215 -EFG--DKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLA 291 (338)
T ss_dssp -HHT--CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -hcC--ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 111 11112222222222222 23211001122222222222111222222333446667788998888877766555
Q ss_pred Hh
Q 026637 207 RH 208 (235)
Q Consensus 207 ~~ 208 (235)
..
T Consensus 292 ~~ 293 (338)
T 3ro2_A 292 IA 293 (338)
T ss_dssp HH
T ss_pred HH
Confidence 44
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.88 E-value=8.5e-09 Score=75.38 Aligned_cols=88 Identities=10% Similarity=0.148 Sum_probs=84.0
Q ss_pred CCChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCC-------HHHHHHHHHHHHHcCCHH
Q 026637 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHD-------CWSQHALCHVLQHDCCFK 73 (235)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~d-------awA~halahvl~~~Gr~~ 73 (235)
.|+.+++....++++...|+++.++..+|..+...|++++|+..+++++.++|++ +.++..+|.++...|+++
T Consensus 17 ~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 96 (131)
T 1elr_A 17 KKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYK 96 (131)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred hcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHHhccHH
Confidence 4899999999999999999999999999999999999999999999999999988 999999999999999999
Q ss_pred HHHHHHHHchhhhcc
Q 026637 74 EAVQFMEECSSTWSS 88 (235)
Q Consensus 74 egi~~l~~a~~~w~~ 88 (235)
+|+..+++.....|+
T Consensus 97 ~A~~~~~~~~~~~~~ 111 (131)
T 1elr_A 97 DAIHFYNKSLAEHRT 111 (131)
T ss_dssp HHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHhCCC
Confidence 999999999988654
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.88 E-value=3e-09 Score=94.76 Aligned_cols=119 Identities=9% Similarity=-0.026 Sum_probs=80.4
Q ss_pred CCChhhHHHHHHhhcCCCCCCh-----------------hHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 026637 1 MGRPDLCFDIIHQVLPYNQQED-----------------FIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALC 63 (235)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~-----------------~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~hala 63 (235)
.|++++|+...++++...|++. .++.++|.++...|+|++|+..+++||+++|+++.++..+|
T Consensus 192 ~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg 271 (338)
T 2if4_A 192 EEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRG 271 (338)
T ss_dssp SSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 4889999999999999999877 38899999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHchhhhccCCcchhHHHHHHHHHH-HHhCCCCHHHHHHHHHhhchh
Q 026637 64 HVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALC-YLEGHSPMRKVLEIYDNHIWK 125 (235)
Q Consensus 64 hvl~~~Gr~~egi~~l~~a~~~w~~~~~~l~~H~~WHlAL~-~le~G~~~deAl~~yd~~i~~ 125 (235)
.++..+|++++|+..++++....|..+. .+. .++.+ ....+ ..+++..+|.+.+..
T Consensus 272 ~a~~~~g~~~~A~~~l~~al~l~p~~~~---a~~--~L~~l~~~~~~-~~~~a~~~~~~~l~~ 328 (338)
T 2if4_A 272 KAKAELGQMDSARDDFRKAQKYAPDDKA---IRR--ELRALAEQEKA-LYQKQKEMYKGIFKG 328 (338)
T ss_dssp HHHHTTTCHHHHHHHHHHTTC------------------------------------------
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCCCHH---HHH--HHHHHHHHHHH-HHHHHHHHHHHhhCC
Confidence 9999999999999999999999887542 233 35554 33344 788999999888766
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.87 E-value=1.5e-08 Score=91.06 Aligned_cols=118 Identities=9% Similarity=-0.017 Sum_probs=78.8
Q ss_pred CChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc------------
Q 026637 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHD------------ 69 (235)
Q Consensus 2 G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~------------ 69 (235)
|+.+++...+++++...|+++.++..+|..+...|++++|++..++|++++|+++.+++.+|.++..+
T Consensus 227 ~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~ 306 (472)
T 4g1t_A 227 EEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGM 306 (472)
T ss_dssp ---CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred hHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 44556666666666666666666666666666666777777777777777777766666666665432
Q ss_pred -------CCHHHHHHHHHHchhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026637 70 -------CCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 125 (235)
Q Consensus 70 -------Gr~~egi~~l~~a~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~ 125 (235)
+.+++++..++++....|.... .+..+|.++...| ++++|+..|++.+..
T Consensus 307 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~-----~~~~lg~~~~~~~-~~~~A~~~~~kaL~~ 363 (472)
T 4g1t_A 307 YGKRKLLELIGHAVAHLKKADEANDNLFR-----VCSILASLHALAD-QYEEAEYYFQKEFSK 363 (472)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHCTTTCC-----CHHHHHHHHHHTT-CHHHHHHHHHHHHHS
T ss_pred HHHHHHHhhHHHHHHHHHHHhhcCCchhh-----hhhhHHHHHHHhc-cHHHHHHHHHHHHhc
Confidence 2345666666666666555331 2335889999998 999999999999876
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.86 E-value=6.7e-09 Score=94.21 Aligned_cols=111 Identities=7% Similarity=-0.052 Sum_probs=98.0
Q ss_pred CCChhhHHHHHHhhcC----------------CCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 026637 1 MGRPDLCFDIIHQVLP----------------YNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCH 64 (235)
Q Consensus 1 ~G~~~~al~~~~ral~----------------~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halah 64 (235)
.|+.++|+...++++. ..|.+..++..+|.++...|+|++|++.+++||+++|+++.++..+|.
T Consensus 236 ~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~ 315 (370)
T 1ihg_A 236 SQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQ 315 (370)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHH
Confidence 4889999999999998 778888999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHchhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHH
Q 026637 65 VLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLE 117 (235)
Q Consensus 65 vl~~~Gr~~egi~~l~~a~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~ 117 (235)
++..+|++++|+..++++....|..+ -.+..++.++...+ +++++.+
T Consensus 316 ~~~~~g~~~eA~~~l~~Al~l~P~~~-----~~~~~l~~~~~~~~-~~~~a~k 362 (370)
T 1ihg_A 316 GWQGLKEYDQALADLKKAQEIAPEDK-----AIQAELLKVKQKIK-AQKDKEK 362 (370)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCH-----HHHHHHHHHHHHHH-HHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHHH-HHHHHHH
Confidence 99999999999999999999988743 34445777777776 6776653
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.86 E-value=1.2e-08 Score=80.60 Aligned_cols=90 Identities=11% Similarity=0.095 Sum_probs=85.9
Q ss_pred CCChhhHHHHHHhhcCCCCCChhHHHHHHHH-HHHhCCH--HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 026637 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFS-LLELGQM--SDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQ 77 (235)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~~g~~Af~-L~e~g~~--~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~ 77 (235)
+|+.++++..+++++..+|+++.++..+|.+ +...|++ ++|+...+++++++|+++.++..+|.++..+|++++|+.
T Consensus 57 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 136 (177)
T 2e2e_A 57 QNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIE 136 (177)
T ss_dssp TTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHH
Confidence 5899999999999999999999999999999 7799999 999999999999999999999999999999999999999
Q ss_pred HHHHchhhhccCC
Q 026637 78 FMEECSSTWSSCS 90 (235)
Q Consensus 78 ~l~~a~~~w~~~~ 90 (235)
.++++....|..+
T Consensus 137 ~~~~al~~~p~~~ 149 (177)
T 2e2e_A 137 LWQKVMDLNSPRI 149 (177)
T ss_dssp HHHHHHHTCCTTS
T ss_pred HHHHHHhhCCCCc
Confidence 9999999988854
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.86 E-value=8.9e-10 Score=79.65 Aligned_cols=84 Identities=17% Similarity=0.143 Sum_probs=77.5
Q ss_pred CCChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHcCCHHH
Q 026637 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHD------CWSQHALCHVLQHDCCFKE 74 (235)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~d------awA~halahvl~~~Gr~~e 74 (235)
.|++++++...++++..+|+++.++..+|.++...|++++|++.++++++++|++ +.++..++.++...|++++
T Consensus 17 ~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (111)
T 2l6j_A 17 QGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYRLELAQGAVGSVQI 96 (111)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHhHhh
Confidence 4899999999999999999999999999999999999999999999999999999 9999999999999999888
Q ss_pred HHHHHHHchh
Q 026637 75 AVQFMEECSS 84 (235)
Q Consensus 75 gi~~l~~a~~ 84 (235)
++..+++..+
T Consensus 97 a~~~~~~~~~ 106 (111)
T 2l6j_A 97 PVVEVDELPE 106 (111)
T ss_dssp CSSSSSSCSS
T ss_pred hHhHHHHhHH
Confidence 8776555433
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.85 E-value=6.4e-08 Score=83.12 Aligned_cols=123 Identities=11% Similarity=0.076 Sum_probs=93.3
Q ss_pred CChhhHHHHHHhhcCCCCCC------hhHHHHHHHHHHHhCCHHHHHHHHHHHH---hhCCCCH----HHHHHHHHHHHH
Q 026637 2 GRPDLCFDIIHQVLPYNQQE------DFIFGILAFSLLELGQMSDAEEAAKKGL---KINKHDC----WSQHALCHVLQH 68 (235)
Q Consensus 2 G~~~~al~~~~ral~~~p~~------~~~~g~~Af~L~e~g~~~~Ae~~arrAL---~L~P~da----wA~halahvl~~ 68 (235)
|+.++++...++++...+.. ..++..+|.++...|+|++|+..+++|+ ...|++. .++.++|.++..
T Consensus 129 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~ 208 (293)
T 2qfc_A 129 VDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYL 208 (293)
T ss_dssp SCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHH
Confidence 67888888888888754322 3578888889999999999999999998 5566653 688889999999
Q ss_pred cCCHHHHHHHHHHchhhhccCCc-chhHHHHHHHHHHHHhCCCCHHHH-HHHHHhhchh
Q 026637 69 DCCFKEAVQFMEECSSTWSSCSS-FMYTHNWWHVALCYLEGHSPMRKV-LEIYDNHIWK 125 (235)
Q Consensus 69 ~Gr~~egi~~l~~a~~~w~~~~~-~l~~H~~WHlAL~~le~G~~~deA-l~~yd~~i~~ 125 (235)
+|++++|+..++++....+..+. ......+.++|.++...| ++++| ...|++++.-
T Consensus 209 ~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g-~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 209 DSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLE-YEEAEIEDAYKKASFF 266 (293)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTT-CCHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcC-CcHHHHHHHHHHHHHH
Confidence 99999999999888766543221 222445566888888887 88888 7778877755
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=98.84 E-value=2.3e-08 Score=69.60 Aligned_cols=84 Identities=11% Similarity=0.105 Sum_probs=72.6
Q ss_pred CChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhhccCCcchhHHHHH
Q 026637 20 QEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWW 99 (235)
Q Consensus 20 ~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~~a~~~w~~~~~~l~~H~~W 99 (235)
.++..+..+|..+...|++++|+..++++++++|+++.++..+|.++...|++++|+..++++....|..+ ..+.
T Consensus 7 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~---~~~~-- 81 (91)
T 1na3_A 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNA---EAKQ-- 81 (91)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---HHHH--
T ss_pred ccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCH---HHHH--
Confidence 45678889999999999999999999999999999999999999999999999999999999999987643 2233
Q ss_pred HHHHHHHhC
Q 026637 100 HVALCYLEG 108 (235)
Q Consensus 100 HlAL~~le~ 108 (235)
.++..+...
T Consensus 82 ~l~~~~~~~ 90 (91)
T 1na3_A 82 NLGNAKQKQ 90 (91)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhc
Confidence 366666543
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=98.83 E-value=1.4e-07 Score=83.57 Aligned_cols=125 Identities=10% Similarity=0.029 Sum_probs=101.7
Q ss_pred CCChhhHHHHHHhhcCCCC---C----ChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCC------CHHHHHHHHHHHH
Q 026637 1 MGRPDLCFDIIHQVLPYNQ---Q----EDFIFGILAFSLLELGQMSDAEEAAKKGLKINKH------DCWSQHALCHVLQ 67 (235)
Q Consensus 1 ~G~~~~al~~~~ral~~~p---~----~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~------dawA~halahvl~ 67 (235)
+|+.+.++...++++...+ + ....+..+|.++...|++++|++.+++|+++.+. .+.+++++|.++.
T Consensus 154 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~ 233 (378)
T 3q15_A 154 MKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYD 233 (378)
T ss_dssp TTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred cCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 5889999999999998643 2 2457889999999999999999999999998542 3568999999999
Q ss_pred HcCCHHHHHHHHHHchhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchhh
Q 026637 68 HDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE 126 (235)
Q Consensus 68 ~~Gr~~egi~~l~~a~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~~ 126 (235)
.+|++++|+..++++..................+|..+...| ++++|+..|++.+...
T Consensus 234 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~ 291 (378)
T 3q15_A 234 RSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAG-QTQKAFQFIEEGLDHI 291 (378)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHC
T ss_pred HCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHH
Confidence 999999999999999884331111111345567999999998 9999999999999874
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.83 E-value=3.1e-08 Score=85.15 Aligned_cols=125 Identities=12% Similarity=0.126 Sum_probs=98.6
Q ss_pred CChhhHHHHHHhhcCCCCC--C----hhHHHHHHHHHHHhCCHHHHHHHHHHHHh-------hCCCCHHHHHHHHHHHHH
Q 026637 2 GRPDLCFDIIHQVLPYNQQ--E----DFIFGILAFSLLELGQMSDAEEAAKKGLK-------INKHDCWSQHALCHVLQH 68 (235)
Q Consensus 2 G~~~~al~~~~ral~~~p~--~----~~~~g~~Af~L~e~g~~~~Ae~~arrAL~-------L~P~dawA~halahvl~~ 68 (235)
|+.++++...++++...+. + ..++..+|.++.+.|+|++|+..+++|+. ..|..+.++.++|.++..
T Consensus 129 ~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~ 208 (293)
T 3u3w_A 129 VDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYL 208 (293)
T ss_dssp SCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHH
Confidence 6788999999999875332 2 23688999999999999999999999994 334445688999999999
Q ss_pred cCCHHHHHHHHHHchhhhccCCcc-hhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchhh
Q 026637 69 DCCFKEAVQFMEECSSTWSSCSSF-MYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE 126 (235)
Q Consensus 69 ~Gr~~egi~~l~~a~~~w~~~~~~-l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~~ 126 (235)
+|++++|+.+++++....+..+.. .....+.++|.++...|.++++|++.|.+++.-.
T Consensus 209 ~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~ 267 (293)
T 3u3w_A 209 DSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 999999999999998776554322 2245667799999998734699999999988764
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=98.82 E-value=2.3e-07 Score=86.15 Aligned_cols=115 Identities=10% Similarity=-0.003 Sum_probs=89.0
Q ss_pred hHHHHHHhhcCCCCCChhHHHHHHHHHHH-------hCCHH-------HHHHHHHHHHh-hCCCCHHHHHHHHHHHHHcC
Q 026637 6 LCFDIIHQVLPYNQQEDFIFGILAFSLLE-------LGQMS-------DAEEAAKKGLK-INKHDCWSQHALCHVLQHDC 70 (235)
Q Consensus 6 ~al~~~~ral~~~p~~~~~~g~~Af~L~e-------~g~~~-------~Ae~~arrAL~-L~P~dawA~halahvl~~~G 70 (235)
+++...++++...|.++.++..+|-.+.. .|+++ +|.+.+++|++ ++|+++..+..++.++...|
T Consensus 256 ~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g 335 (530)
T 2ooe_A 256 RVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRM 335 (530)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcC
Confidence 55667888888888888888888887775 68876 88888888887 78888888888888888888
Q ss_pred CHHHHHHHHHHchhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026637 71 CFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 125 (235)
Q Consensus 71 r~~egi~~l~~a~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~ 125 (235)
+++++...++++....|..+ .-.|-.++.++...| ++++|+++|++++..
T Consensus 336 ~~~~A~~~~~~al~~~p~~~----~~~~~~~~~~~~~~~-~~~~A~~~~~~Al~~ 385 (530)
T 2ooe_A 336 KYEKVHSIYNRLLAIEDIDP----TLVYIQYMKFARRAE-GIKSGRMIFKKARED 385 (530)
T ss_dssp CHHHHHHHHHHHHHSSSSCH----HHHHHHHHHHHHHHH-HHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHhCccccCc----hHHHHHHHHHHHHhc-CHHHHHHHHHHHHhc
Confidence 88888888888887765532 124444666666666 788888888888764
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.82 E-value=2.2e-08 Score=80.54 Aligned_cols=88 Identities=8% Similarity=-0.030 Sum_probs=84.6
Q ss_pred CCChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCH----------------HHHHHHHH
Q 026637 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDC----------------WSQHALCH 64 (235)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~da----------------wA~halah 64 (235)
+|+.++++...++++..+|+++.++..+|.++...|++++|++.+++++++.|++. .++..+|.
T Consensus 50 ~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 129 (213)
T 1hh8_A 50 LKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAF 129 (213)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999888877 99999999
Q ss_pred HHHHcCCHHHHHHHHHHchhhhcc
Q 026637 65 VLQHDCCFKEAVQFMEECSSTWSS 88 (235)
Q Consensus 65 vl~~~Gr~~egi~~l~~a~~~w~~ 88 (235)
++..+|++++|+..++++....|.
T Consensus 130 ~~~~~g~~~~A~~~~~~al~~~p~ 153 (213)
T 1hh8_A 130 MYAKKEEWKKAEEQLALATSMKSE 153 (213)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred HHHHccCHHHHHHHHHHHHHcCcc
Confidence 999999999999999999999876
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.79 E-value=2.6e-07 Score=79.25 Aligned_cols=125 Identities=10% Similarity=0.029 Sum_probs=100.7
Q ss_pred CCChhhHHHHHHhhcCCCCCCh------hHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHH
Q 026637 1 MGRPDLCFDIIHQVLPYNQQED------FIFGILAFSLLELGQMSDAEEAAKKGLKINKHD------CWSQHALCHVLQH 68 (235)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~------~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~d------awA~halahvl~~ 68 (235)
.|+.+++...+.+++...+..+ ..+..+|..+...|++++|+...++|+.+.+.. +.++..+|.++..
T Consensus 88 ~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~ 167 (293)
T 2qfc_A 88 QKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAE 167 (293)
T ss_dssp TTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHH
Confidence 4788999999999988766543 234556777888899999999999999987655 6689999999999
Q ss_pred cCCHHHHHHHHHHchhhhccCCc--chhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchhh
Q 026637 69 DCCFKEAVQFMEECSSTWSSCSS--FMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE 126 (235)
Q Consensus 69 ~Gr~~egi~~l~~a~~~w~~~~~--~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~~ 126 (235)
+|++++|+..++++.......+. .+....+.++|.++...| +|++|+..|++.+...
T Consensus 168 ~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~-~y~~Al~~~~kal~~~ 226 (293)
T 2qfc_A 168 NGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDS-RYEESLYQVNKAIEIS 226 (293)
T ss_dssp TTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHh-hHHHHHHHHHHHHHHH
Confidence 99999999999999854333222 112246667999999998 9999999999998763
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=98.78 E-value=9.2e-07 Score=82.08 Aligned_cols=115 Identities=10% Similarity=0.046 Sum_probs=99.1
Q ss_pred hHHHHHHhhcC-CCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHch
Q 026637 6 LCFDIIHQVLP-YNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDC-WSQHALCHVLQHDCCFKEAVQFMEECS 83 (235)
Q Consensus 6 ~al~~~~ral~-~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~da-wA~halahvl~~~Gr~~egi~~l~~a~ 83 (235)
+++...+|++. ..|++..++..++..+...|++++|++.++++++++|+++ .++...+.++..+|+.++++..++++.
T Consensus 304 ~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al 383 (530)
T 2ooe_A 304 EAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAR 383 (530)
T ss_dssp HHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 89999999998 8999999999999999999999999999999999999996 688999999999999999999999998
Q ss_pred hhhccCCcchhHHHHHHHHHH-HHhCCCCHHHHHHHHHhhchhh
Q 026637 84 STWSSCSSFMYTHNWWHVALC-YLEGHSPMRKVLEIYDNHIWKE 126 (235)
Q Consensus 84 ~~w~~~~~~l~~H~~WHlAL~-~le~G~~~deAl~~yd~~i~~~ 126 (235)
..-|.. .+.++-.++. +...| ++++|+.+|++.+...
T Consensus 384 ~~~~~~-----~~~~~~~a~~~~~~~~-~~~~A~~~~e~al~~~ 421 (530)
T 2ooe_A 384 EDARTR-----HHVYVTAALMEYYCSK-DKSVAFKIFELGLKKY 421 (530)
T ss_dssp TCTTCC-----THHHHHHHHHHHHHTC-CHHHHHHHHHHHHHHH
T ss_pred hccCCc-----hHHHHHHHHHHHHHcC-ChhHHHHHHHHHHHHC
Confidence 875442 3444444444 22477 8999999999999873
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.78 E-value=3.3e-07 Score=81.78 Aligned_cols=116 Identities=12% Similarity=-0.034 Sum_probs=60.9
Q ss_pred hhHHHHHHhhcCCCCCChhHHHHHHHHHHHhC--CHHHHHHHHHHHHhhCCCCHHHHHHHHHHH----HHc---CCHHHH
Q 026637 5 DLCFDIIHQVLPYNQQEDFIFGILAFSLLELG--QMSDAEEAAKKGLKINKHDCWSQHALCHVL----QHD---CCFKEA 75 (235)
Q Consensus 5 ~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g--~~~~Ae~~arrAL~L~P~dawA~halahvl----~~~---Gr~~eg 75 (235)
++++...+++|..+|++..+....+.++...| +++++.+...++|.+||++.++++..+.++ ... ++.++.
T Consensus 50 ~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~E 129 (306)
T 3dra_A 50 ERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYRE 129 (306)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHH
T ss_pred HHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHH
Confidence 44555555555555555555555555555555 555555555555555555555555555555 433 455555
Q ss_pred HHHHHHchhhhccCCcchhHHHHHHHHHHHHhCCCCHH--HHHHHHHhhchhh
Q 026637 76 VQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMR--KVLEIYDNHIWKE 126 (235)
Q Consensus 76 i~~l~~a~~~w~~~~~~l~~H~~WHlAL~~le~G~~~d--eAl~~yd~~i~~~ 126 (235)
+.++++.....|. + .|.|-|.....-..| +++ ++++.+++.|...
T Consensus 130 L~~~~~~l~~~pk-n----y~aW~~R~~vl~~l~-~~~~~~EL~~~~~~i~~d 176 (306)
T 3dra_A 130 FDILEAMLSSDPK-N----HHVWSYRKWLVDTFD-LHNDAKELSFVDKVIDTD 176 (306)
T ss_dssp HHHHHHHHHHCTT-C----HHHHHHHHHHHHHTT-CTTCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCCC-C----HHHHHHHHHHHHHhc-ccChHHHHHHHHHHHHhC
Confidence 5555555555544 2 344444444444444 444 5555555555444
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.77 E-value=7.4e-09 Score=84.72 Aligned_cols=90 Identities=14% Similarity=0.109 Sum_probs=79.7
Q ss_pred HHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH----------HHHHHHHHHchhhhccCCcchhHHHHHHH
Q 026637 32 LLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCF----------KEAVQFMEECSSTWSSCSSFMYTHNWWHV 101 (235)
Q Consensus 32 L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~----------~egi~~l~~a~~~w~~~~~~l~~H~~WHl 101 (235)
....++|++|.+.+++|+++||+++.++.++|-++...|++ ++|+..+++++...|.. .-.||++
T Consensus 12 ~~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~-----~~A~~~L 86 (158)
T 1zu2_A 12 FDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKK-----DEAVWCI 86 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTC-----HHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCc-----HHHHHHH
Confidence 45667899999999999999999999999999999999986 59999999999999884 3467789
Q ss_pred HHHHHhCC----------CCHHHHHHHHHhhchhh
Q 026637 102 ALCYLEGH----------SPMRKVLEIYDNHIWKE 126 (235)
Q Consensus 102 AL~~le~G----------~~~deAl~~yd~~i~~~ 126 (235)
+.+|..+| |++++|++.|+++|...
T Consensus 87 G~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~ 121 (158)
T 1zu2_A 87 GNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQ 121 (158)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhC
Confidence 99998763 27999999999999873
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.77 E-value=3e-08 Score=88.07 Aligned_cols=121 Identities=10% Similarity=-0.030 Sum_probs=102.6
Q ss_pred CCChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHHcCCHHHHHHH
Q 026637 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHD--CWSQHALCHVLQHDCCFKEAVQF 78 (235)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~d--awA~halahvl~~~Gr~~egi~~ 78 (235)
+|++++++..++++++..|++. ++.++|..+.+.|++++|++..++++...++. ..++..+|.++...|++++|+++
T Consensus 115 ~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~LG~~~eAl~~ 193 (282)
T 4f3v_A 115 QGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANLALFTEAERR 193 (282)
T ss_dssp HTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 4899999999999999999998 99999999999999999999999998864332 45899999999999999999999
Q ss_pred HHHchhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026637 79 MEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 125 (235)
Q Consensus 79 l~~a~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~ 125 (235)
++++.... ..|.. ....++.+|+++.++| +.++|.++|++.+..
T Consensus 194 l~~a~~g~-~~P~~-~~da~~~~glaL~~lG-r~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 194 LTEANDSP-AGEAC-ARAIAWYLAMARRSQG-NESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHTST-TTTTT-HHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHH
T ss_pred HHHHhcCC-CCccc-cHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhc
Confidence 99997543 11221 1234456999999998 999999999999887
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=98.76 E-value=2.2e-08 Score=73.91 Aligned_cols=81 Identities=9% Similarity=0.048 Sum_probs=72.8
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHH
Q 026637 39 SDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEI 118 (235)
Q Consensus 39 ~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~~a~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~ 118 (235)
.+|++.++++++++|+++.++..+|.++..+|++++|+..++++....|..+ ..+..+|.++...| ++++|+..
T Consensus 2 ~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~-----~~~~~la~~~~~~g-~~~~A~~~ 75 (115)
T 2kat_A 2 QAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYS-----VAWKWLGKTLQGQG-DRAGARQA 75 (115)
T ss_dssp CCHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-----HHHHHHHHHHHHHT-CHHHHHHH
T ss_pred hHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcH-----HHHHHHHHHHHHcC-CHHHHHHH
Confidence 3578899999999999999999999999999999999999999999987642 34556999999998 99999999
Q ss_pred HHhhchh
Q 026637 119 YDNHIWK 125 (235)
Q Consensus 119 yd~~i~~ 125 (235)
|++.+..
T Consensus 76 ~~~al~~ 82 (115)
T 2kat_A 76 WESGLAA 82 (115)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9998876
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.75 E-value=5.1e-08 Score=87.59 Aligned_cols=118 Identities=13% Similarity=0.095 Sum_probs=97.9
Q ss_pred CChhhHHHHHHhhcCCCCCChhHHHHHHHH---HHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----cCCHHH
Q 026637 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFS---LLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQH----DCCFKE 74 (235)
Q Consensus 2 G~~~~al~~~~ral~~~p~~~~~~g~~Af~---L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~----~Gr~~e 74 (235)
++.++|+...++++..+|+++.++..++.+ +...+++++|.+..++|++++|+++.+...++.++.. .|+.++
T Consensus 152 ~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~ 231 (472)
T 4g1t_A 152 NQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGE 231 (472)
T ss_dssp THHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHHHHHHHCC------CH
T ss_pred ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHhhhhHHHH
Confidence 457899999999999999999877666654 6667888999999999999999999999999877654 567889
Q ss_pred HHHHHHHchhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026637 75 AVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 125 (235)
Q Consensus 75 gi~~l~~a~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~ 125 (235)
++..++++....|..+ ..+-.+|.++...| ++++|+..|++.+..
T Consensus 232 a~~~~~~al~~~~~~~-----~~~~~lg~~~~~~~-~~~~A~~~~~~al~~ 276 (472)
T 4g1t_A 232 GEKLVEEALEKAPGVT-----DVLRSAAKFYRRKD-EPDKAIELLKKALEY 276 (472)
T ss_dssp HHHHHHHHHHHCSSCH-----HHHHHHHHHHHHTT-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCccHH-----HHHHHHHHHHHHcC-chHHHHHHHHHHHHh
Confidence 9999999999887743 34446999999998 999999999999876
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=98.75 E-value=4e-08 Score=68.41 Aligned_cols=70 Identities=16% Similarity=0.199 Sum_probs=67.1
Q ss_pred CCChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Q 026637 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDC 70 (235)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~G 70 (235)
.|++++++...++++...|+++.++..+|.++...|++++|++.++++++++|+++.++..++.++..+|
T Consensus 22 ~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g 91 (91)
T 1na3_A 22 QGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 91 (91)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred ccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcC
Confidence 4899999999999999999999999999999999999999999999999999999999999999998765
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.72 E-value=4.2e-08 Score=85.26 Aligned_cols=124 Identities=8% Similarity=0.039 Sum_probs=102.7
Q ss_pred CCChhhHHHHHHhhcCCCCC------ChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHH
Q 026637 1 MGRPDLCFDIIHQVLPYNQQ------EDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHD------CWSQHALCHVLQH 68 (235)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~------~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~d------awA~halahvl~~ 68 (235)
.|++++++....+++...+. ....+..+|.++...|++++|+..+++|+++.+.. +.++..+|.++..
T Consensus 49 ~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~ 128 (307)
T 2ifu_A 49 AKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP 128 (307)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc
Confidence 47889999999999887542 24578889999999999999999999999996532 5788999999998
Q ss_pred cCCHHHHHHHHHHchhhhccCCcc-hhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchhh
Q 026637 69 DCCFKEAVQFMEECSSTWSSCSSF-MYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE 126 (235)
Q Consensus 69 ~Gr~~egi~~l~~a~~~w~~~~~~-l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~~ 126 (235)
|++++|+..++++....+..+.. .....+-.+|.++...| +|++|+..|++.+...
T Consensus 129 -g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~ 185 (307)
T 2ifu_A 129 -LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQ-KFDEAAASLQKEKSMY 185 (307)
T ss_dssp -TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHH
T ss_pred -CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHH
Confidence 99999999999999988764321 11234556999999998 9999999999998864
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.71 E-value=1.1e-07 Score=71.16 Aligned_cols=103 Identities=17% Similarity=0.098 Sum_probs=87.5
Q ss_pred hhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHchhhhccCCcc-hh
Q 026637 22 DFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDC------WSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSF-MY 94 (235)
Q Consensus 22 ~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~da------wA~halahvl~~~Gr~~egi~~l~~a~~~w~~~~~~-l~ 94 (235)
..++..+|..+...|++++|++.+++++++.|+.. .++..+|.++..+|++++|+..++++....+..+.. ..
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 88 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHH
Confidence 46788999999999999999999999999987654 589999999999999999999999998877664321 12
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026637 95 THNWWHVALCYLEGHSPMRKVLEIYDNHIWK 125 (235)
Q Consensus 95 ~H~~WHlAL~~le~G~~~deAl~~yd~~i~~ 125 (235)
...+..+|.++...| ++++|++.|++.+..
T Consensus 89 ~~~~~~l~~~~~~~~-~~~~A~~~~~~a~~~ 118 (164)
T 3ro3_A 89 AQSCYSLGNTYTLLQ-DYEKAIDYHLKHLAI 118 (164)
T ss_dssp HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH
Confidence 335566999999998 999999999998866
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.67 E-value=1.6e-07 Score=67.08 Aligned_cols=86 Identities=9% Similarity=0.103 Sum_probs=74.3
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHhhCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHchhhhccCCcchhHHHHHHHHHHH
Q 026637 27 ILAFSLLELGQMSDAEEAAKKGLKINKHDCW-SQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCY 105 (235)
Q Consensus 27 ~~Af~L~e~g~~~~Ae~~arrAL~L~P~daw-A~halahvl~~~Gr~~egi~~l~~a~~~w~~~~~~l~~H~~WHlAL~~ 105 (235)
..|..+...|++++|++.++++++++|+++. ++..+|.++..+|++++|+..++++....|..+ ..+++
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~------- 74 (99)
T 2kc7_A 5 KTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSP---ALQAR------- 74 (99)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTST---HHHHH-------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcH---HHHHH-------
Confidence 4577888999999999999999999999999 999999999999999999999999999988754 22221
Q ss_pred HhCCCCHHHHHHHHHhhchhh
Q 026637 106 LEGHSPMRKVLEIYDNHIWKE 126 (235)
Q Consensus 106 le~G~~~deAl~~yd~~i~~~ 126 (235)
+ .+++++..|.+.+...
T Consensus 75 ---~-~~~~a~~~~~~~~~~~ 91 (99)
T 2kc7_A 75 ---K-MVMDILNFYNKDMYNQ 91 (99)
T ss_dssp ---H-HHHHHHHHHCCTTHHH
T ss_pred ---H-HHHHHHHHHHHHhccC
Confidence 4 6889999998877653
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.65 E-value=3.8e-07 Score=81.39 Aligned_cols=189 Identities=7% Similarity=-0.042 Sum_probs=133.6
Q ss_pred ChhhHHHHHHhhcCCCCCChhHHHHHHHHH----HHh---CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHH--
Q 026637 3 RPDLCFDIIHQVLPYNQQEDFIFGILAFSL----LEL---GQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFK-- 73 (235)
Q Consensus 3 ~~~~al~~~~ral~~~p~~~~~~g~~Af~L----~e~---g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~-- 73 (235)
+.++++....+++..+|.+..+....+.++ ... ++++++.+...++++++|++.++++-.+.++...|+++
T Consensus 84 ~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~ 163 (306)
T 3dra_A 84 NLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDA 163 (306)
T ss_dssp CHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCH
T ss_pred cHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChH
Confidence 788999999999999999999999999999 666 79999999999999999999999999999999999998
Q ss_pred HHHHHHHHchhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchhhhcCCCCCchHhHhHHHHHHHHHHhcCc
Q 026637 74 EAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNALGLLLRVYVRGE 153 (235)
Q Consensus 74 egi~~l~~a~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~~~~~~~~~~~~~~~da~sLL~Rl~l~G~ 153 (235)
+.+++.++.....|+ | .|-|-|........| +.. -..+|+..+.--. + ....+.-|.++-.+|-.+...
T Consensus 164 ~EL~~~~~~i~~d~~-N----~sAW~~R~~ll~~l~-~~~-~~~~~~eEl~~~~-~---aI~~~p~n~SaW~y~~~ll~~ 232 (306)
T 3dra_A 164 KELSFVDKVIDTDLK-N----NSAWSHRFFLLFSKK-HLA-TDNTIDEELNYVK-D---KIVKCPQNPSTWNYLLGIHER 232 (306)
T ss_dssp HHHHHHHHHHHHCTT-C----HHHHHHHHHHHHSSG-GGC-CHHHHHHHHHHHH-H---HHHHCSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCC-C----HHHHHHHHHHHHhcc-ccc-hhhhHHHHHHHHH-H---HHHhCCCCccHHHHHHHHHHh
Confidence 999999999999887 4 356555665555544 211 1123333333210 0 012236889999999888866
Q ss_pred ccccccchHHHHHHHHhhhc----chhcchhhHHHHHHHhcCCCchHHHHHHHHHH
Q 026637 154 LDVFGNRLKVLADCVADQAN----WYLECHLDLLILWALANTGEVSKAEDLLKGLK 205 (235)
Q Consensus 154 ~~~~g~rw~~la~~~~~~~~----~~~~~F~d~H~~~al~~ag~~~~~~~ll~~~~ 205 (235)
. |...+.+.+....-.. ....+|+---.+-.+...|+.+.+.++.+.+.
T Consensus 233 ~---~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~ 285 (306)
T 3dra_A 233 F---DRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLK 285 (306)
T ss_dssp T---TCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred c---CCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 3 4445656555554222 12233433333444556677666666665554
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.63 E-value=9.4e-07 Score=75.74 Aligned_cols=125 Identities=10% Similarity=0.025 Sum_probs=98.4
Q ss_pred CCChhhHHHHHHhhcCCCCCChh------HHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCH------HHHHHHHHHHHH
Q 026637 1 MGRPDLCFDIIHQVLPYNQQEDF------IFGILAFSLLELGQMSDAEEAAKKGLKINKHDC------WSQHALCHVLQH 68 (235)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~------~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~da------wA~halahvl~~ 68 (235)
.|+.+++...+++++...+..+. .+..++..+...|++++|....++|+.+.+... .++..+|.++..
T Consensus 88 ~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~ 167 (293)
T 3u3w_A 88 QKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAE 167 (293)
T ss_dssp TTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHH
Confidence 37889999999999987765554 233456666777899999999999999755433 379999999999
Q ss_pred cCCHHHHHHHHHHchhhhccCC--cchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchhh
Q 026637 69 DCCFKEAVQFMEECSSTWSSCS--SFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE 126 (235)
Q Consensus 69 ~Gr~~egi~~l~~a~~~w~~~~--~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~~ 126 (235)
+|++++|+..++++.......+ .......+.++|.++...| +|++|+..|++.+.-.
T Consensus 168 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~-~y~~A~~~~~~al~~~ 226 (293)
T 3u3w_A 168 NGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDS-RYEESLYQVNKAIEIS 226 (293)
T ss_dssp TTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHH
Confidence 9999999999999986443321 1122335667999999998 9999999999998764
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.63 E-value=5.5e-06 Score=68.16 Aligned_cols=144 Identities=13% Similarity=0.026 Sum_probs=109.8
Q ss_pred hhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC----CHHHHHHHHH
Q 026637 5 DLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDC----CFKEAVQFME 80 (235)
Q Consensus 5 ~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~G----r~~egi~~l~ 80 (235)
++++...+++... +++.++..+|..+...+++++|++.+++|++. +++.++..+|.++.. | ++++|+.+++
T Consensus 3 ~eA~~~~~~aa~~--g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~ 77 (212)
T 3rjv_A 3 TEPGSQYQQQAEA--GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GDGDALALLAQLKIR-NPQQADYPQARQLAE 77 (212)
T ss_dssp -CTTHHHHHHHHT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTS-STTSCCHHHHHHHHH
T ss_pred chHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHH
Confidence 3566777777765 88999999999999999999999999999764 799999999999988 7 9999999999
Q ss_pred HchhhhccCCcchhHHHHHHHHHHHHh----CCCCHHHHHHHHHhhchhhhcCCCCCchHhHhHHHHHHHHHHhcCcccc
Q 026637 81 ECSSTWSSCSSFMYTHNWWHVALCYLE----GHSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNALGLLLRVYVRGELDV 156 (235)
Q Consensus 81 ~a~~~w~~~~~~l~~H~~WHlAL~~le----~G~~~deAl~~yd~~i~~~~~~~~~~~~~~~~da~sLL~Rl~l~G~~~~ 156 (235)
++... . ....++ .++.+|+. .+ ++++|+.+|.+.+... +.....++.-.|=.+...|..|
T Consensus 78 ~A~~~--g---~~~a~~--~Lg~~y~~g~g~~~-d~~~A~~~~~~A~~~~-------~~~~~~~a~~~Lg~~y~~g~g~- 141 (212)
T 3rjv_A 78 KAVEA--G---SKSGEI--VLARVLVNRQAGAT-DVAHAITLLQDAARDS-------ESDAAVDAQMLLGLIYASGVHG- 141 (212)
T ss_dssp HHHHT--T---CHHHHH--HHHHHHTCGGGSSC-CHHHHHHHHHHHTSST-------TSHHHHHHHHHHHHHHHHTSSS-
T ss_pred HHHHC--C---CHHHHH--HHHHHHHcCCCCcc-CHHHHHHHHHHHHHcC-------CCcchHHHHHHHHHHHHcCCCC-
Confidence 99654 2 112333 59999987 76 8999999999988763 1112356666677777777754
Q ss_pred cccchHHHHHHHHh
Q 026637 157 FGNRLKVLADCVAD 170 (235)
Q Consensus 157 ~g~rw~~la~~~~~ 170 (235)
....+.-...+..
T Consensus 142 -~~d~~~A~~~~~~ 154 (212)
T 3rjv_A 142 -PEDDVKASEYFKG 154 (212)
T ss_dssp -SCCHHHHHHHHHH
T ss_pred -CCCHHHHHHHHHH
Confidence 3455555555544
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=98.63 E-value=4.7e-07 Score=86.85 Aligned_cols=117 Identities=13% Similarity=0.122 Sum_probs=106.6
Q ss_pred hhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCC----------HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC--C
Q 026637 4 PDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQ----------MSDAEEAAKKGLKINKHDCWSQHALCHVLQHDC--C 71 (235)
Q Consensus 4 ~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~----------~~~Ae~~arrAL~L~P~dawA~halahvl~~~G--r 71 (235)
.++++...++++..+|++..++...+.++...|+ +++|.+...+++..+|++.++++..++++...| +
T Consensus 45 ~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~ 124 (567)
T 1dce_A 45 DESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPN 124 (567)
T ss_dssp SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCC
T ss_pred CHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccccc
Confidence 4688999999999999999999999999999998 999999999999999999999999999999999 6
Q ss_pred HHHHHHHHHHchhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026637 72 FKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 125 (235)
Q Consensus 72 ~~egi~~l~~a~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~ 125 (235)
+++++++++++....|+ + .|.|-|.+......|..++++++.+++.|..
T Consensus 125 ~~~el~~~~k~l~~d~~-N----~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~ 173 (567)
T 1dce_A 125 WARELELCARFLEADER-N----FHCWDYRRFVAAQAAVAPAEELAFTDSLITR 173 (567)
T ss_dssp HHHHHHHHHHHHHHCTT-C----HHHHHHHHHHHHHTCCCHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHHHHhhccc-c----ccHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 79999999999999988 4 4777777777766654799999999999986
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.62 E-value=1.3e-07 Score=84.03 Aligned_cols=185 Identities=11% Similarity=0.039 Sum_probs=135.6
Q ss_pred CChhhHHHHHHhhcCCCCCChhHHHHH-------HHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHH-------------
Q 026637 2 GRPDLCFDIIHQVLPYNQQEDFIFGIL-------AFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA------------- 61 (235)
Q Consensus 2 G~~~~al~~~~ral~~~p~~~~~~g~~-------Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~ha------------- 61 (235)
++.++++..+.+++..+|+.+.++..+ +.+|...+++.++....+++++++|+...+...
T Consensus 20 ~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~~v~ 99 (282)
T 4f3v_A 20 MSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITYPVT 99 (282)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEEECS
T ss_pred CCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCcccccccccC
Confidence 688999999999999999999999888 899999999999999999999999998776666
Q ss_pred --------HHHHHHHcCCHHHHHHHHHHchhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchhhhcCCCCC
Q 026637 62 --------LCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAV 133 (235)
Q Consensus 62 --------lahvl~~~Gr~~egi~~l~~a~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~~~~~~~~~ 133 (235)
.+-++...|++++|.+.+++.....|. . . ..|.+|+.+++.| ++++|++.|++.+...
T Consensus 100 ~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~---~--~-~~~~~a~l~~~~~-r~~dA~~~l~~a~~~~------- 165 (282)
T 4f3v_A 100 SPLAITMGFAACEAAQGNYADAMEALEAAPVAGSE---H--L-VAWMKAVVYGAAE-RWTDVIDQVKSAGKWP------- 165 (282)
T ss_dssp SHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCH---H--H-HHHHHHHHHHHTT-CHHHHHHHHTTGGGCS-------
T ss_pred CHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCc---h--H-HHHHHHHHHHHcC-CHHHHHHHHHHhhccC-------
Confidence 778899999999999999998876654 2 2 5567999999998 9999999998665431
Q ss_pred chHhHhH-HHHHHHHHHhcCcccccccchHHHHHHHHhhhcchh--cchhhHH--HHHHHhcCCCchHHHHHHHHHHHH
Q 026637 134 HPEVYLN-ALGLLLRVYVRGELDVFGNRLKVLADCVADQANWYL--ECHLDLL--ILWALANTGEVSKAEDLLKGLKSR 207 (235)
Q Consensus 134 ~~~~~~d-a~sLL~Rl~l~G~~~~~g~rw~~la~~~~~~~~~~~--~~F~d~H--~~~al~~ag~~~~~~~ll~~~~~~ 207 (235)
.+.+.+ +.-.|=+. ++.. .++++-.+.+..-..... ..+.|.+ ..++|...|+.+++..+++.+...
T Consensus 166 -d~~~~~~a~~~LG~a-l~~L-----G~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 166 -DKFLAGAAGVAHGVA-AANL-----ALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp -CHHHHHHHHHHHHHH-HHHT-----TCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred -CcccHHHHHHHHHHH-HHHC-----CCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 111112 22222111 1111 134444444433222221 1144554 488999999999999999888765
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.62 E-value=5.9e-07 Score=74.10 Aligned_cols=81 Identities=11% Similarity=-0.016 Sum_probs=38.9
Q ss_pred ChhhHHHHHHhhcCCCCCChhHHHHHHHHHHH----hCCHHHHHHHHHHHHhhCC--CCHHHHHHHHHHHHH----cCCH
Q 026637 3 RPDLCFDIIHQVLPYNQQEDFIFGILAFSLLE----LGQMSDAEEAAKKGLKINK--HDCWSQHALCHVLQH----DCCF 72 (235)
Q Consensus 3 ~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e----~g~~~~Ae~~arrAL~L~P--~dawA~halahvl~~----~Gr~ 72 (235)
+.++++...++++ .++++.++..+|..+.. .+++++|++..++|++.+| +++.++..+|.++.. .+++
T Consensus 68 ~~~~A~~~~~~A~--~~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~ 145 (212)
T 3rjv_A 68 DYPQARQLAEKAV--EAGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDD 145 (212)
T ss_dssp CHHHHHHHHHHHH--HTTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCH
T ss_pred CHHHHHHHHHHHH--HCCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCH
Confidence 3444444444442 23444444444444444 4455555555555555544 234555555555554 4455
Q ss_pred HHHHHHHHHchhh
Q 026637 73 KEAVQFMEECSST 85 (235)
Q Consensus 73 ~egi~~l~~a~~~ 85 (235)
++|+.+++++...
T Consensus 146 ~~A~~~~~~A~~~ 158 (212)
T 3rjv_A 146 VKASEYFKGSSSL 158 (212)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHc
Confidence 5555555554443
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.62 E-value=1.7e-08 Score=94.32 Aligned_cols=96 Identities=9% Similarity=0.054 Sum_probs=84.8
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhhccCCcchhHHHHHHHHH
Q 026637 24 IFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVAL 103 (235)
Q Consensus 24 ~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~~a~~~w~~~~~~l~~H~~WHlAL 103 (235)
.+..+|..+...|+|++|++.+++|++++|+++.++..+|.++..+|++++|+..++++....|..+ ..+..+|.
T Consensus 8 ~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~-----~~~~~lg~ 82 (477)
T 1wao_1 8 ELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYI-----KGYYRRAA 82 (477)
T ss_dssp TSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCH-----HHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCH-----HHHHHHHH
Confidence 3444555677899999999999999999999999999999999999999999999999999987642 34446999
Q ss_pred HHHhCCCCHHHHHHHHHhhchh
Q 026637 104 CYLEGHSPMRKVLEIYDNHIWK 125 (235)
Q Consensus 104 ~~le~G~~~deAl~~yd~~i~~ 125 (235)
+++..| ++++|++.|++.+..
T Consensus 83 ~~~~~g-~~~eA~~~~~~al~~ 103 (477)
T 1wao_1 83 SNMALG-KFRAALRDYETVVKV 103 (477)
T ss_dssp HHHHHT-CHHHHHHHHHHHHHH
T ss_pred HHHHcC-CHHHHHHHHHHHHHh
Confidence 999998 999999999999886
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=98.60 E-value=1.5e-07 Score=86.56 Aligned_cols=114 Identities=7% Similarity=-0.077 Sum_probs=91.9
Q ss_pred hhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCC-----------HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH
Q 026637 4 PDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQ-----------MSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCF 72 (235)
Q Consensus 4 ~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~-----------~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~ 72 (235)
..++++.++||+..+|++++++..+++++..... ..+|.+ +..++.++|+++.++.++++++..+|++
T Consensus 215 ~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~-a~~a~~~~~~~a~~~~alal~~l~~gd~ 293 (372)
T 3ly7_A 215 LNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEID-NIVTLPELNNLSIIYQIKAVSALVKGKT 293 (372)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHH-HHHTCGGGTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHH-HHHhcccCCcCHHHHHHHHHHHHhCCCH
Confidence 4688999999999999999999999987753221 112333 2245688999999999999999999999
Q ss_pred HHHHHHHHHchhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026637 73 KEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 125 (235)
Q Consensus 73 ~egi~~l~~a~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~ 125 (235)
++|+..++++....|+ . ..|.. ++..+...| ++++|++.|++++..
T Consensus 294 d~A~~~l~rAl~Ln~s---~-~a~~l--lG~~~~~~G-~~~eA~e~~~~AlrL 339 (372)
T 3ly7_A 294 DESYQAINTGIDLEMS---W-LNYVL--LGKVYEMKG-MNREAADAYLTAFNL 339 (372)
T ss_dssp HHHHHHHHHHHHHCCC---H-HHHHH--HHHHHHHTT-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCC---H-HHHHH--HHHHHHHCC-CHHHHHHHHHHHHhc
Confidence 9999999999999743 2 23333 677777787 999999999999988
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=98.59 E-value=2.6e-07 Score=81.88 Aligned_cols=124 Identities=8% Similarity=-0.042 Sum_probs=103.5
Q ss_pred CCChhhHHHHHHhhcCCCC------CChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCC-------CHHHHHHHHHHHH
Q 026637 1 MGRPDLCFDIIHQVLPYNQ------QEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKH-------DCWSQHALCHVLQ 67 (235)
Q Consensus 1 ~G~~~~al~~~~ral~~~p------~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~-------dawA~halahvl~ 67 (235)
.|+.++|+...++++...+ ..+.++..+|.++...|++++|...+++|+++.|. .+.++..+|.++.
T Consensus 114 ~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~ 193 (378)
T 3q15_A 114 QKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYD 193 (378)
T ss_dssp TTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHH
T ss_pred HCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHH
Confidence 4899999999999998632 34578999999999999999999999999998664 2567889999999
Q ss_pred HcCCHHHHHHHHHHchhhhccCCc-chhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026637 68 HDCCFKEAVQFMEECSSTWSSCSS-FMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 125 (235)
Q Consensus 68 ~~Gr~~egi~~l~~a~~~w~~~~~-~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~ 125 (235)
.+|++++|+..++++....+..+. ......+..+|.++...| ++++|++.|.+.+..
T Consensus 194 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~-~~~~A~~~~~~al~~ 251 (378)
T 3q15_A 194 DFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSG-DDQMAVEHFQKAAKV 251 (378)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHH
Confidence 999999999999999886554321 123345556999999998 999999999999884
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.55 E-value=1.4e-07 Score=67.32 Aligned_cols=81 Identities=10% Similarity=0.088 Sum_probs=73.2
Q ss_pred CCChhhHHHHHHhhcCCCCCChh-HHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 026637 1 MGRPDLCFDIIHQVLPYNQQEDF-IFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFM 79 (235)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~-~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l 79 (235)
.|+.++++..+++++..+|+++. ++..+|.++...|++++|++.++++++++|+++.++.. +.+.+++..+
T Consensus 13 ~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~~~~~a~~~~ 84 (99)
T 2kc7_A 13 QGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------KMVMDILNFY 84 (99)
T ss_dssp HTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------HHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------HHHHHHHHHH
Confidence 37899999999999999999999 99999999999999999999999999999999987643 7788888888
Q ss_pred HHchhhhccC
Q 026637 80 EECSSTWSSC 89 (235)
Q Consensus 80 ~~a~~~w~~~ 89 (235)
++.....|+.
T Consensus 85 ~~~~~~~p~~ 94 (99)
T 2kc7_A 85 NKDMYNQLEH 94 (99)
T ss_dssp CCTTHHHHCC
T ss_pred HHHhccCccc
Confidence 8887777663
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.54 E-value=3.1e-07 Score=83.15 Aligned_cols=97 Identities=9% Similarity=-0.085 Sum_probs=87.9
Q ss_pred hHHHHHHHHHHHhCCHHHHHHHHHHHHh----------------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhh
Q 026637 23 FIFGILAFSLLELGQMSDAEEAAKKGLK----------------INKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTW 86 (235)
Q Consensus 23 ~~~g~~Af~L~e~g~~~~Ae~~arrAL~----------------L~P~dawA~halahvl~~~Gr~~egi~~l~~a~~~w 86 (235)
..+..+|..+...|+|++|++.+++|++ ++|.++.++.++|.++..+|++++|+..++++....
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 303 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID 303 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC
Confidence 4577889999999999999999999999 899999999999999999999999999999999988
Q ss_pred ccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026637 87 SSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 125 (235)
Q Consensus 87 ~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~ 125 (235)
|..+ ..+..+|.+++.+| ++++|++.|++.+..
T Consensus 304 p~~~-----~a~~~lg~~~~~~g-~~~eA~~~l~~Al~l 336 (370)
T 1ihg_A 304 PSNT-----KALYRRAQGWQGLK-EYDQALADLKKAQEI 336 (370)
T ss_dssp TTCH-----HHHHHHHHHHHHTT-CHHHHHHHHHHHHHH
T ss_pred chhH-----HHHHHHHHHHHHcc-CHHHHHHHHHHHHHh
Confidence 7632 34446999999998 999999999999877
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.50 E-value=2e-07 Score=82.98 Aligned_cols=99 Identities=9% Similarity=-0.037 Sum_probs=87.8
Q ss_pred ChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCH-----------------HHHHHHHHHHHHcCCHHHHHHHHHHch
Q 026637 21 EDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDC-----------------WSQHALCHVLQHDCCFKEAVQFMEECS 83 (235)
Q Consensus 21 ~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~da-----------------wA~halahvl~~~Gr~~egi~~l~~a~ 83 (235)
....+..+|..+...|+|++|+..+++|+.++|++. .++.++|.++..+|++++|+..++++.
T Consensus 178 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al 257 (338)
T 2if4_A 178 AADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVL 257 (338)
T ss_dssp HHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 456778889999999999999999999999999998 489999999999999999999999999
Q ss_pred hhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026637 84 STWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 125 (235)
Q Consensus 84 ~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~ 125 (235)
...|.. ...+..+|.+++.+| ++++|+..|++.+..
T Consensus 258 ~~~p~~-----~~a~~~lg~a~~~~g-~~~~A~~~l~~al~l 293 (338)
T 2if4_A 258 TEEEKN-----PKALFRRGKAKAELG-QMDSARDDFRKAQKY 293 (338)
T ss_dssp HHCTTC-----HHHHHHHHHHHHTTT-CHHHHHHHHHHTTC-
T ss_pred HhCCCC-----HHHHHHHHHHHHHcC-CHHHHHHHHHHHHHH
Confidence 998763 234456999999998 999999999999876
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=98.49 E-value=6.3e-07 Score=65.33 Aligned_cols=70 Identities=16% Similarity=0.161 Sum_probs=60.7
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchhh
Q 026637 51 INKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE 126 (235)
Q Consensus 51 L~P~dawA~halahvl~~~Gr~~egi~~l~~a~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~~ 126 (235)
.+|+++.++..+|.++..+|++++|+..++++....|..+ ..|..+|.++...| ++++|++.|++.+...
T Consensus 2 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~-----~a~~~lg~~~~~~g-~~~~A~~~~~~al~l~ 71 (100)
T 3ma5_A 2 EDPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYV-----GTYYHLGKLYERLD-RTDDAIDTYAQGIEVA 71 (100)
T ss_dssp ---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCT-----HHHHHHHHHHHHTT-CHHHHHHHHHHHHHHH
T ss_pred CCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH-----HHHHHHHHHHHHcC-CHHHHHHHHHHHHhhh
Confidence 4899999999999999999999999999999999998854 24556999999998 9999999999998763
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.47 E-value=1.2e-06 Score=79.76 Aligned_cols=133 Identities=11% Similarity=0.074 Sum_probs=115.5
Q ss_pred CChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhC-CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc-C-CHHHHHHH
Q 026637 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELG-QMSDAEEAAKKGLKINKHDCWSQHALCHVLQHD-C-CFKEAVQF 78 (235)
Q Consensus 2 G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g-~~~~Ae~~arrAL~L~P~dawA~halahvl~~~-G-r~~egi~~ 78 (235)
+..++++...++++..+|++..+....+.++...| .++++.+...++|..||++.++++..+.++... + ++++.+++
T Consensus 68 e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~ 147 (349)
T 3q7a_A 68 EKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEY 147 (349)
T ss_dssp CCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHH
T ss_pred CCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHH
Confidence 45678999999999999999999999999999999 599999999999999999999999999999998 8 99999999
Q ss_pred HHHchhhhccCCcchhHHHHHHHHHHHHhCCCCHH--------HHHHHHHhhchhhhcCCCCCchHhHhHHHHHHHHHHh
Q 026637 79 MEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMR--------KVLEIYDNHIWKELEKPDAVHPEVYLNALGLLLRVYV 150 (235)
Q Consensus 79 l~~a~~~w~~~~~~l~~H~~WHlAL~~le~G~~~d--------eAl~~yd~~i~~~~~~~~~~~~~~~~da~sLL~Rl~l 150 (235)
+++.....|. + .|.|-|.....-..| .++ ++++.+++.|... ..|.++--+|-.+
T Consensus 148 ~~k~L~~dpk-N----y~AW~~R~wvl~~l~-~~~~~~~~~~~eELe~~~k~I~~d-----------p~N~SAW~~R~~l 210 (349)
T 3q7a_A 148 IHGSLLPDPK-N----YHTWAYLHWLYSHFS-TLGRISEAQWGSELDWCNEMLRVD-----------GRNNSAWGWRWYL 210 (349)
T ss_dssp HHHHTSSCTT-C----HHHHHHHHHHHHHHH-HTTCCCHHHHHHHHHHHHHHHHHC-----------TTCHHHHHHHHHH
T ss_pred HHHHHHhCCC-C----HHHHHHHHHHHHHhc-cccccchhhHHHHHHHHHHHHHhC-----------CCCHHHHHHHHHH
Confidence 9999999888 3 477777776665555 566 9999999998873 2466777777666
Q ss_pred c
Q 026637 151 R 151 (235)
Q Consensus 151 ~ 151 (235)
.
T Consensus 211 L 211 (349)
T 3q7a_A 211 R 211 (349)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.46 E-value=3.9e-06 Score=75.89 Aligned_cols=115 Identities=13% Similarity=0.120 Sum_probs=104.7
Q ss_pred hhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCC----------HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC--H
Q 026637 5 DLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQ----------MSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCC--F 72 (235)
Q Consensus 5 ~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~----------~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr--~ 72 (235)
++++....+++..+|++..+.+..+.++...+. ++++.+...++|..||++.++++..+.++...|+ +
T Consensus 47 ~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~ 126 (331)
T 3dss_A 47 ESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNW 126 (331)
T ss_dssp HHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCH
T ss_pred HHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccH
Confidence 579999999999999999999999999988776 7899999999999999999999999999999995 8
Q ss_pred HHHHHHHHHchhhhccCCcchhHHHHHHHHHHHHhCCCC-HHHHHHHHHhhchh
Q 026637 73 KEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSP-MRKVLEIYDNHIWK 125 (235)
Q Consensus 73 ~egi~~l~~a~~~w~~~~~~l~~H~~WHlAL~~le~G~~-~deAl~~yd~~i~~ 125 (235)
++.++++++.....|. | .|.|-|........| . ++++++.+++.|..
T Consensus 127 ~~EL~~~~k~l~~dpr-N----y~AW~~R~~vl~~l~-~~~~eel~~~~~~I~~ 174 (331)
T 3dss_A 127 ARELELCARFLEADER-N----FHCWDYRRFVAAQAA-VAPAEELAFTDSLITR 174 (331)
T ss_dssp HHHHHHHHHHHHHCTT-C----HHHHHHHHHHHHHTT-CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCC-C----HHHHHHHHHHHHHhC-cCHHHHHHHHHHHHHH
Confidence 9999999999999988 4 578878887777777 6 69999999999987
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=98.41 E-value=1e-05 Score=74.42 Aligned_cols=110 Identities=8% Similarity=-0.004 Sum_probs=57.6
Q ss_pred hhhHHHHHHhhcCCCCCChhHHHHHHHHHHHh----CCHHHHHHHHHHHHhhCCCCHHHHHHHHHH-H--HHcCCHHHHH
Q 026637 4 PDLCFDIIHQVLPYNQQEDFIFGILAFSLLEL----GQMSDAEEAAKKGLKINKHDCWSQHALCHV-L--QHDCCFKEAV 76 (235)
Q Consensus 4 ~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~----g~~~~Ae~~arrAL~L~P~dawA~halahv-l--~~~Gr~~egi 76 (235)
.++++..+++++...|.++..+..+|..+... +++++|.+.+++|. |+++.++..+|.+ + ...|++++|+
T Consensus 195 ~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~a~~~Lg~~~~~~~~~~d~~~A~ 271 (452)
T 3e4b_A 195 QAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGYPASWVSLAQLLYDFPELGDVEQMM 271 (452)
T ss_dssp HHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGSTHHHHHHHHHHHHSGGGCCHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHhCCCCCCHHHHH
Confidence 34555556666655555555555555555433 45566666666655 5666666666655 3 3455666666
Q ss_pred HHHHHchhhhccCCcchhHHHHHHHHHHHHhCC---CCHHHHHHHHHhhc
Q 026637 77 QFMEECSSTWSSCSSFMYTHNWWHVALCYLEGH---SPMRKVLEIYDNHI 123 (235)
Q Consensus 77 ~~l~~a~~~w~~~~~~l~~H~~WHlAL~~le~G---~~~deAl~~yd~~i 123 (235)
.+++++.... ....++ .++.+|.... .++++|+++|.+.+
T Consensus 272 ~~~~~Aa~~g-----~~~A~~--~Lg~~y~~G~g~~~d~~~A~~~~~~Aa 314 (452)
T 3e4b_A 272 KYLDNGRAAD-----QPRAEL--LLGKLYYEGKWVPADAKAAEAHFEKAV 314 (452)
T ss_dssp HHHHHHHHTT-----CHHHHH--HHHHHHHHCSSSCCCHHHHHHHHHTTT
T ss_pred HHHHHHHHCC-----CHHHHH--HHHHHHHcCCCCCCCHHHHHHHHHHHh
Confidence 6665554332 111222 2555554310 14566666665555
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=98.40 E-value=1.8e-06 Score=63.73 Aligned_cols=72 Identities=11% Similarity=0.013 Sum_probs=66.7
Q ss_pred CCCChhHHHHHHHHHHHhCC---HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhhccC
Q 026637 18 NQQEDFIFGILAFSLLELGQ---MSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSC 89 (235)
Q Consensus 18 ~p~~~~~~g~~Af~L~e~g~---~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~~a~~~w~~~ 89 (235)
+|+++.+++.+|-++...++ .++|+...++||+++|+++-+...+|.+++.+|++++|+..+++.....|..
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~ 76 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPN 76 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTT
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 68899999999999976665 7999999999999999999999999999999999999999999998888773
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=98.36 E-value=4.6e-05 Score=70.07 Aligned_cols=93 Identities=14% Similarity=0.063 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHhC---CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHchhhhccCCcchhHH
Q 026637 24 IFGILAFSLLELG---QMSDAEEAAKKGLKINKHDCWSQHALCHVLQHD----CCFKEAVQFMEECSSTWSSCSSFMYTH 96 (235)
Q Consensus 24 ~~g~~Af~L~e~g---~~~~Ae~~arrAL~L~P~dawA~halahvl~~~----Gr~~egi~~l~~a~~~w~~~~~~l~~H 96 (235)
++..+|..+...| ++++|.+.+++|++.+|.++.++..+|.++... +++++|+.+++++. |..+ ..+
T Consensus 178 a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~---~a~ 251 (452)
T 3e4b_A 178 CYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGYP---ASW 251 (452)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGST---HHH
T ss_pred HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCH---HHH
Confidence 6667777777777 777777777777777777777777777777544 57777777777766 3322 233
Q ss_pred HHHHHHHHH---HhCCCCHHHHHHHHHhhchh
Q 026637 97 NWWHVALCY---LEGHSPMRKVLEIYDNHIWK 125 (235)
Q Consensus 97 ~~WHlAL~~---le~G~~~deAl~~yd~~i~~ 125 (235)
+ .++.++ ...| ++++|+++|.+.+..
T Consensus 252 ~--~Lg~~~~~~~~~~-d~~~A~~~~~~Aa~~ 280 (452)
T 3e4b_A 252 V--SLAQLLYDFPELG-DVEQMMKYLDNGRAA 280 (452)
T ss_dssp H--HHHHHHHHSGGGC-CHHHHHHHHHHHHHT
T ss_pred H--HHHHHHHhCCCCC-CHHHHHHHHHHHHHC
Confidence 3 366653 3455 677777777776654
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=98.34 E-value=2.1e-06 Score=78.90 Aligned_cols=76 Identities=18% Similarity=0.180 Sum_probs=70.1
Q ss_pred hhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhhccC
Q 026637 13 QVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSC 89 (235)
Q Consensus 13 ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~~a~~~w~~~ 89 (235)
.+++..|.++.++..+++.+.-.|++++|++.++||+++|| +..++..+|.++++.|++++|++.++++.+..|..
T Consensus 268 ~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~-s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~ 343 (372)
T 3ly7_A 268 VTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEM-SWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGA 343 (372)
T ss_dssp HTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSH
T ss_pred HhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 45677899999999999999989999999999999999997 47788899999999999999999999999998774
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=98.32 E-value=2e-06 Score=82.42 Aligned_cols=116 Identities=13% Similarity=0.084 Sum_probs=101.5
Q ss_pred hhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhC--CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHH
Q 026637 4 PDLCFDIIHQVLPYNQQEDFIFGILAFSLLELG--QMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDC-CFKEAVQFME 80 (235)
Q Consensus 4 ~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g--~~~~Ae~~arrAL~L~P~dawA~halahvl~~~G-r~~egi~~l~ 80 (235)
.++++..+++++..+|.+..++...++++...| ++++|.+...++++++|++..|++..+.|+...| +.++++++.+
T Consensus 89 ~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~ 168 (567)
T 1dce_A 89 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTD 168 (567)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHH
Confidence 688999999999999999999999999999999 7799999999999999999999999999999999 9999999999
Q ss_pred HchhhhccCCcchhHHHHHHHHHHHHhC--------------CCCHHHHHHHHHhhchh
Q 026637 81 ECSSTWSSCSSFMYTHNWWHVALCYLEG--------------HSPMRKVLEIYDNHIWK 125 (235)
Q Consensus 81 ~a~~~w~~~~~~l~~H~~WHlAL~~le~--------------G~~~deAl~~yd~~i~~ 125 (235)
+++...|+.. --|-|.+..+... + .++++++.|+++|..
T Consensus 169 ~~I~~~p~n~-----saW~~r~~ll~~l~~~~~~~~~~~~~~~-~~~eel~~~~~ai~~ 221 (567)
T 1dce_A 169 SLITRNFSNY-----SSWHYRSCLLPQLHPQPDSGPQGRLPEN-VLLKELELVQNAFFT 221 (567)
T ss_dssp TTTTTTCCCH-----HHHHHHHHHHHHHSCCCCSSSCCSSCHH-HHHHHHHHHHHHHHH
T ss_pred HHHHHCCCCc-----cHHHHHHHHHHhhcccccccccccccHH-HHHHHHHHHHHHHhh
Confidence 9999988832 2233344444332 4 689999999999976
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.29 E-value=1.8e-05 Score=72.00 Aligned_cols=119 Identities=8% Similarity=0.012 Sum_probs=105.8
Q ss_pred CC-ChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHh-C-CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHH----
Q 026637 1 MG-RPDLCFDIIHQVLPYNQQEDFIFGILAFSLLEL-G-QMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFK---- 73 (235)
Q Consensus 1 ~G-~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~-g-~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~---- 73 (235)
+| +.++.+..+++++..+|.+..+....++++... + +++++.+...++|+++|+|..|++-.+.|+...|+.+
T Consensus 101 l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~ 180 (349)
T 3q7a_A 101 LNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISE 180 (349)
T ss_dssp TTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCH
T ss_pred hhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccch
Confidence 35 478999999999999999999999999999998 8 9999999999999999999999999999999999998
Q ss_pred ----HHHHHHHHchhhhccCCcchhHHHHHHHHHHHHhCCCC-------HHHHHHHHHhhchh
Q 026637 74 ----EAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSP-------MRKVLEIYDNHIWK 125 (235)
Q Consensus 74 ----egi~~l~~a~~~w~~~~~~l~~H~~WHlAL~~le~G~~-------~deAl~~yd~~i~~ 125 (235)
+.+++.++.....|+ + .+-|-|.+......| + ++++++.+++.|..
T Consensus 181 ~~~~eELe~~~k~I~~dp~-N----~SAW~~R~~lL~~l~-~~~~~~~~~~eELe~~~~aI~~ 237 (349)
T 3q7a_A 181 AQWGSELDWCNEMLRVDGR-N----NSAWGWRWYLRVSRP-GAETSSRSLQDELIYILKSIHL 237 (349)
T ss_dssp HHHHHHHHHHHHHHHHCTT-C----HHHHHHHHHHHTTST-TCCCCHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhCCC-C----HHHHHHHHHHHHhcc-ccccchHHHHHHHHHHHHHHHh
Confidence 999999999999887 3 355556666665565 5 79999999999987
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.28 E-value=0.00013 Score=66.83 Aligned_cols=112 Identities=12% Similarity=0.004 Sum_probs=68.1
Q ss_pred CChhhHHHHHHhhcCCCCCChhHHHHHHHHHHH----hCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----cCCHH
Q 026637 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLE----LGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQH----DCCFK 73 (235)
Q Consensus 2 G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e----~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~----~Gr~~ 73 (235)
|+.++++...++++.. +++.++..+|..+.. .+++++|.+.+++|++. +++.++..+|.++.. .++++
T Consensus 57 ~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~ 132 (490)
T 2xm6_A 57 KDLTQAMDWFRRAAEQ--GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK--GLPQAQQNLGVMYHEGNGVKVDKA 132 (490)
T ss_dssp CCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHH
T ss_pred cCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHH
Confidence 4566666666666654 556666666666666 66777777777776553 466666677776666 66677
Q ss_pred HHHHHHHHchhhhccCCcchhHHHHHHHHHHHHh----CCCCHHHHHHHHHhhchh
Q 026637 74 EAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLE----GHSPMRKVLEIYDNHIWK 125 (235)
Q Consensus 74 egi~~l~~a~~~w~~~~~~l~~H~~WHlAL~~le----~G~~~deAl~~yd~~i~~ 125 (235)
+|+.+++++..... + ...+ .+|.+|.. .+ ++++|+++|.+.+..
T Consensus 133 ~A~~~~~~a~~~~~--~---~a~~--~Lg~~y~~g~g~~~-d~~~A~~~~~~a~~~ 180 (490)
T 2xm6_A 133 ESVKWFRLAAEQGR--D---SGQQ--SMGDAYFEGDGVTR-DYVMAREWYSKAAEQ 180 (490)
T ss_dssp HHHHHHHHHHHTTC--H---HHHH--HHHHHHHHTSSSCC-CHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCCC--H---HHHH--HHHHHHHcCCCCCC-CHHHHHHHHHHHHHC
Confidence 77777666654311 1 1222 36666654 44 566666666665543
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.27 E-value=1.4e-06 Score=82.45 Aligned_cols=121 Identities=10% Similarity=-0.089 Sum_probs=96.1
Q ss_pred CChhhHHHHHHhhcCC-----CCCCh---hHHHHHHHHHHHhCCHHHHHHHHHHHHhh--------CCCCHHHHHHHHHH
Q 026637 2 GRPDLCFDIIHQVLPY-----NQQED---FIFGILAFSLLELGQMSDAEEAAKKGLKI--------NKHDCWSQHALCHV 65 (235)
Q Consensus 2 G~~~~al~~~~ral~~-----~p~~~---~~~g~~Af~L~e~g~~~~Ae~~arrAL~L--------~P~dawA~halahv 65 (235)
|++++|+...+++|.. -|+++ ..++++|.++..+|+|++|+..++++|++ .|+-+.++.++|.+
T Consensus 323 g~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~ 402 (490)
T 3n71_A 323 GLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLT 402 (490)
T ss_dssp TCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 7888999888888874 24454 57888999999999999999999999986 35556889999999
Q ss_pred HHHcCCHHHHHHHHHHchhhhcc-----CCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026637 66 LQHDCCFKEAVQFMEECSSTWSS-----CSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 125 (235)
Q Consensus 66 l~~~Gr~~egi~~l~~a~~~w~~-----~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~ 125 (235)
+..+|++++|+..++++...... .|.... ..=.++.+++++| .|.+|..+|.++...
T Consensus 403 ~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~--~~~~l~~~~~e~~-~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 403 NWHAGHIEVGHGMICKAYAILLVTHGPSHPITKD--LEAMRMQTEMELR-MFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHH--HHHHHHHHHHHHH-HHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHH--HHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 99999999999999999765433 121111 2224888999998 899999999876443
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.27 E-value=0.00016 Score=66.17 Aligned_cols=112 Identities=5% Similarity=-0.101 Sum_probs=75.5
Q ss_pred CChhhHHHHHHhhcCCCCCChhHHHHHHHHHHH----hCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----cCCHH
Q 026637 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLE----LGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQH----DCCFK 73 (235)
Q Consensus 2 G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e----~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~----~Gr~~ 73 (235)
++.++++...++++.. +++.++..+|..+.. .+++++|+..+++|++. +++.+...+|.++.. .++++
T Consensus 93 ~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~d~~ 168 (490)
T 2xm6_A 93 QDYAQAVIWYKKAALK--GLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ--GRDSGQQSMGDAYFEGDGVTRDYV 168 (490)
T ss_dssp CCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHH
T ss_pred CCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHH
Confidence 5667777777777653 566777777777777 67777777777777654 577777777777776 67777
Q ss_pred HHHHHHHHchhhhccCCcchhHHHHHHHHHHHHh----CCCCHHHHHHHHHhhchh
Q 026637 74 EAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLE----GHSPMRKVLEIYDNHIWK 125 (235)
Q Consensus 74 egi~~l~~a~~~w~~~~~~l~~H~~WHlAL~~le----~G~~~deAl~~yd~~i~~ 125 (235)
+|+.+++++...- .+ ..+ ..++.+|.. .+ ++++|+++|.+.+..
T Consensus 169 ~A~~~~~~a~~~~--~~---~a~--~~Lg~~y~~g~g~~~-~~~~A~~~~~~a~~~ 216 (490)
T 2xm6_A 169 MAREWYSKAAEQG--NV---WSC--NQLGYMYSRGLGVER-NDAISAQWYRKSATS 216 (490)
T ss_dssp HHHHHHHHHHHTT--CH---HHH--HHHHHHHHHTSSSCC-CHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCC--CH---HHH--HHHHHHHhcCCCCCc-CHHHHHHHHHHHHHC
Confidence 7777777776541 11 122 237777765 55 677777777766554
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.20 E-value=6.9e-06 Score=77.70 Aligned_cols=92 Identities=8% Similarity=-0.027 Sum_probs=74.7
Q ss_pred HHHhCCHHHHHHHHHHHHhh-----CCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHchhhhcc-----CCcchhHHHH
Q 026637 32 LLELGQMSDAEEAAKKGLKI-----NKH---DCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSS-----CSSFMYTHNW 98 (235)
Q Consensus 32 L~e~g~~~~Ae~~arrAL~L-----~P~---dawA~halahvl~~~Gr~~egi~~l~~a~~~w~~-----~~~~l~~H~~ 98 (235)
+..+|+|++|+.+.+++|++ -|+ -+.++.++|.++..+|++++|+..++++...+.. .|.. ....
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~--a~~l 396 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQL--GMAV 396 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHH--HHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHH--HHHH
Confidence 56789999999999999985 344 4578899999999999999999999999766532 2222 2233
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHhhchhh
Q 026637 99 WHVALCYLEGHSPMRKVLEIYDNHIWKE 126 (235)
Q Consensus 99 WHlAL~~le~G~~~deAl~~yd~~i~~~ 126 (235)
-++|..|..+| +|++|+.+|.+++...
T Consensus 397 ~nLa~~~~~~G-~~~eA~~~~~~Al~i~ 423 (490)
T 3n71_A 397 MRAGLTNWHAG-HIEVGHGMICKAYAIL 423 (490)
T ss_dssp HHHHHHHHHTT-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCC-CHHHHHHHHHHHHHHH
Confidence 46999999998 9999999999988774
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=98.19 E-value=1.3e-05 Score=62.07 Aligned_cols=109 Identities=6% Similarity=-0.037 Sum_probs=91.9
Q ss_pred ChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----cCCHHHHHHH
Q 026637 3 RPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQH----DCCFKEAVQF 78 (235)
Q Consensus 3 ~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~----~Gr~~egi~~ 78 (235)
|.++++...+++....+..+. +|..+...+.+++|.+..++|.+. +++.+...+|.++.. .+++++|+.+
T Consensus 10 d~~~A~~~~~~aa~~g~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~ 83 (138)
T 1klx_A 10 DLKKAIQYYVKACELNEMFGC----LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQY 83 (138)
T ss_dssp HHHHHHHHHHHHHHTTCTTHH----HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCHhhh----HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHHHH
Confidence 568899999999987654444 788888888999999999999987 899999999999999 9999999999
Q ss_pred HHHchhhhccCCcchhHHHHHHHHHHHHh----CCCCHHHHHHHHHhhchh
Q 026637 79 MEECSSTWSSCSSFMYTHNWWHVALCYLE----GHSPMRKVLEIYDNHIWK 125 (235)
Q Consensus 79 l~~a~~~w~~~~~~l~~H~~WHlAL~~le----~G~~~deAl~~yd~~i~~ 125 (235)
++++...-. + ...+ +++.+|.. .+ ++++|+.+|.+.+..
T Consensus 84 ~~~Aa~~g~--~---~a~~--~Lg~~y~~G~g~~~-d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 84 YSKACGLND--Q---DGCL--ILGYKQYAGKGVVK-NEKQAVKTFEKACRL 126 (138)
T ss_dssp HHHHHHTTC--H---HHHH--HHHHHHHHTSSSCC-CHHHHHHHHHHHHHT
T ss_pred HHHHHcCCC--H---HHHH--HHHHHHHCCCCCCc-CHHHHHHHHHHHHHC
Confidence 999987621 1 2333 49999988 66 899999999998876
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=98.17 E-value=2.3e-06 Score=76.51 Aligned_cols=87 Identities=8% Similarity=-0.058 Sum_probs=78.6
Q ss_pred ChhhHHHHHHhhcCCCCC--ChhHHHHHHHHHHH-----hCCHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHH-cCCHH
Q 026637 3 RPDLCFDIIHQVLPYNQQ--EDFIFGILAFSLLE-----LGQMSDAEEAAKKGLKINKHD-CWSQHALCHVLQH-DCCFK 73 (235)
Q Consensus 3 ~~~~al~~~~ral~~~p~--~~~~~g~~Af~L~e-----~g~~~~Ae~~arrAL~L~P~d-awA~halahvl~~-~Gr~~ 73 (235)
..+.+++.++||+.++|+ ++-+|..+|..+.. -|+.++|++.++|||+|||+. +.+....|..+.. +|+.+
T Consensus 178 ~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~ 257 (301)
T 3u64_A 178 TVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRA 257 (301)
T ss_dssp HHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHH
T ss_pred hHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHH
Confidence 356889999999999999 66799999999988 499999999999999999975 9999999999988 49999
Q ss_pred HHHHHHHHchhhhccC
Q 026637 74 EAVQFMEECSSTWSSC 89 (235)
Q Consensus 74 egi~~l~~a~~~w~~~ 89 (235)
++.+.++++...-|+.
T Consensus 258 ~a~~~L~kAL~a~p~~ 273 (301)
T 3u64_A 258 GFDEALDRALAIDPES 273 (301)
T ss_dssp HHHHHHHHHHHCCGGG
T ss_pred HHHHHHHHHHcCCCCC
Confidence 9999999999988774
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.16 E-value=0.00011 Score=66.27 Aligned_cols=116 Identities=13% Similarity=0.083 Sum_probs=99.1
Q ss_pred hhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhC--CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC-HHHHHHHHH
Q 026637 4 PDLCFDIIHQVLPYNQQEDFIFGILAFSLLELG--QMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCC-FKEAVQFME 80 (235)
Q Consensus 4 ~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g--~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr-~~egi~~l~ 80 (235)
..+.+..+.+++..+|.+..+....++++...| .++++.+...++++++|+|..|++-.+.|+...|+ .++.+++.+
T Consensus 90 l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~ 169 (331)
T 3dss_A 90 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTD 169 (331)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHH
Confidence 467889999999999999999999999999999 49999999999999999999999999999999999 599999999
Q ss_pred HchhhhccCCcchhHHHHHHHHHHHHhC--------------CCCHHHHHHHHHhhchh
Q 026637 81 ECSSTWSSCSSFMYTHNWWHVALCYLEG--------------HSPMRKVLEIYDNHIWK 125 (235)
Q Consensus 81 ~a~~~w~~~~~~l~~H~~WHlAL~~le~--------------G~~~deAl~~yd~~i~~ 125 (235)
+++...|+.. .-|-|.+...... + .++++++.+++.|..
T Consensus 170 ~~I~~~p~N~-----SAW~~R~~ll~~l~~~~~~~~~~~~~~~-~~~eEle~~~~ai~~ 222 (331)
T 3dss_A 170 SLITRNFSNY-----SSWHYRSCLLPQLHPQPDSGPQGRLPEN-VLLKELELVQNAFFT 222 (331)
T ss_dssp HHHHHCSCCH-----HHHHHHHHHHHHHSCCC------CCCHH-HHHHHHHHHHHHHHH
T ss_pred HHHHHCCCCH-----HHHHHHHHHHHHhhhccccccccccchH-HHHHHHHHHHHHHHh
Confidence 9999988832 2233343333222 3 589999999999987
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=98.01 E-value=1.2e-05 Score=74.83 Aligned_cols=89 Identities=9% Similarity=0.008 Sum_probs=72.5
Q ss_pred hCCHHHHHHHHHHHHhh-----CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHchhhhcc-----CCcchhHHHHHHH
Q 026637 35 LGQMSDAEEAAKKGLKI-----NKHD---CWSQHALCHVLQHDCCFKEAVQFMEECSSTWSS-----CSSFMYTHNWWHV 101 (235)
Q Consensus 35 ~g~~~~Ae~~arrAL~L-----~P~d---awA~halahvl~~~Gr~~egi~~l~~a~~~w~~-----~~~~l~~H~~WHl 101 (235)
.|+|++|+.+.+++|++ -|++ +..+.++|.++..+|++++|+..++++...+.. .|.. +.-.-++
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~--a~~l~nL 388 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNV--ASMWLKL 388 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHH--HHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHH--HHHHHHH
Confidence 57899999999999984 4555 466789999999999999999999999766533 2222 2234469
Q ss_pred HHHHHhCCCCHHHHHHHHHhhchhh
Q 026637 102 ALCYLEGHSPMRKVLEIYDNHIWKE 126 (235)
Q Consensus 102 AL~~le~G~~~deAl~~yd~~i~~~ 126 (235)
|..|..+| +|++|+.+|.+++...
T Consensus 389 a~~~~~qg-~~~eA~~~~~~Al~i~ 412 (433)
T 3qww_A 389 GRLYMGLE-NKAAGEKALKKAIAIM 412 (433)
T ss_dssp HHHHHHTT-CHHHHHHHHHHHHHHH
T ss_pred HHHHHhcc-CHHHHHHHHHHHHHHH
Confidence 99999998 9999999999998875
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=97.92 E-value=1.4e-05 Score=74.45 Aligned_cols=88 Identities=8% Similarity=-0.069 Sum_probs=75.3
Q ss_pred CCChhhHHHHHHhhcCC-----CCCChh---HHHHHHHHHHHhCCHHHHHHHHHHHHhh--------CCCCHHHHHHHHH
Q 026637 1 MGRPDLCFDIIHQVLPY-----NQQEDF---IFGILAFSLLELGQMSDAEEAAKKGLKI--------NKHDCWSQHALCH 64 (235)
Q Consensus 1 ~G~~~~al~~~~ral~~-----~p~~~~---~~g~~Af~L~e~g~~~~Ae~~arrAL~L--------~P~dawA~halah 64 (235)
.|+.++|+...+++|.. -|++++ .+.++|.++..+|+|++|+..++++|++ .|+-+..+.++|.
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 37889999999998873 456664 6778899999999999999999999986 5566788999999
Q ss_pred HHHHcCCHHHHHHHHHHchhhhcc
Q 026637 65 VLQHDCCFKEAVQFMEECSSTWSS 88 (235)
Q Consensus 65 vl~~~Gr~~egi~~l~~a~~~w~~ 88 (235)
++..+|+++||+..++++......
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~i~~~ 414 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIAIMEV 414 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999877643
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=97.90 E-value=8.8e-05 Score=66.51 Aligned_cols=114 Identities=11% Similarity=0.021 Sum_probs=63.5
Q ss_pred CChhhHHHHHHhhcCCCC--CChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCC------CCHHHHHHHHHHHHHcC--C
Q 026637 2 GRPDLCFDIIHQVLPYNQ--QEDFIFGILAFSLLELGQMSDAEEAAKKGLKINK------HDCWSQHALCHVLQHDC--C 71 (235)
Q Consensus 2 G~~~~al~~~~ral~~~p--~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P------~dawA~halahvl~~~G--r 71 (235)
|+.++|+..+.+.+...| ++..+..+.+.++...|+.+.|++..++..+.+| +.....-+-++|...+| +
T Consensus 114 g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~Laea~v~l~~g~~~ 193 (310)
T 3mv2_B 114 GDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGDNEMILNLAESYIKFATNKET 193 (310)
T ss_dssp TCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTCST
T ss_pred CCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccccchHHHHHHHHHHHHHHhCCcc
Confidence 566666666666666554 5555666666666666666666666666666666 23334444455555555 6
Q ss_pred HHHHHHHHHHchhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhh
Q 026637 72 FKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNH 122 (235)
Q Consensus 72 ~~egi~~l~~a~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~ 122 (235)
..++..++++.....|. +-.....|. +++.+| ++++|.++++..
T Consensus 194 ~q~A~~~f~El~~~~p~---~~~~~lLln---~~~~~g-~~~eAe~~L~~l 237 (310)
T 3mv2_B 194 ATSNFYYYEELSQTFPT---WKTQLGLLN---LHLQQR-NIAEAQGIVELL 237 (310)
T ss_dssp TTHHHHHHHHHHTTSCS---HHHHHHHHH---HHHHHT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCC---cccHHHHHH---HHHHcC-CHHHHHHHHHHH
Confidence 66666666665544432 000122222 455555 666666666543
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.90 E-value=0.00015 Score=64.11 Aligned_cols=146 Identities=10% Similarity=0.015 Sum_probs=112.2
Q ss_pred CChhhHHHHHHhhcCCCCCCh-----------------hHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHH------
Q 026637 2 GRPDLCFDIIHQVLPYNQQED-----------------FIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWS------ 58 (235)
Q Consensus 2 G~~~~al~~~~ral~~~p~~~-----------------~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA------ 58 (235)
|+..+|++...+++...|... .++..+|-.+...|++++|.+...+++.+.+....+
T Consensus 18 ~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 97 (434)
T 4b4t_Q 18 KQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVL 97 (434)
T ss_dssp TCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHH
Confidence 789999999999998776533 247788999999999999999999999988876554
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHchhhhccCC-cchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchhhhcCCCCCchHh
Q 026637 59 QHALCHVLQHDCCFKEAVQFMEECSSTWSSCS-SFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEV 137 (235)
Q Consensus 59 ~halahvl~~~Gr~~egi~~l~~a~~~w~~~~-~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~~~~~~~~~~~~~ 137 (235)
...++.++...|+.++++.+++.+....+... .+.....+-.+|..+.+.| +|++|+.++.+.+... .+. .....
T Consensus 98 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~l~~~~~~~-~~~--~~~~~ 173 (434)
T 4b4t_Q 98 KTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKK-QYKDSLALINDLLREF-KKL--DDKPS 173 (434)
T ss_dssp HHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHH-TTS--SCSTH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHcc-ChHHHHHHHHHHHHHH-Hhc--ccchh
Confidence 34578888899999999999999866544322 2334456667999999998 9999999998877653 222 22334
Q ss_pred HhHHHHHHHHHHhc
Q 026637 138 YLNALGLLLRVYVR 151 (235)
Q Consensus 138 ~~da~sLL~Rl~l~ 151 (235)
.++....+.|+.+.
T Consensus 174 ~~~~~~~~~~~~~~ 187 (434)
T 4b4t_Q 174 LVDVHLLESKVYHK 187 (434)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 56777777777764
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=97.88 E-value=5.3e-05 Score=70.27 Aligned_cols=92 Identities=5% Similarity=-0.124 Sum_probs=74.8
Q ss_pred HHHhCCHHHHHHHHHHHHhh-----CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHchhhhcc-----CCcchhHHHH
Q 026637 32 LLELGQMSDAEEAAKKGLKI-----NKHD---CWSQHALCHVLQHDCCFKEAVQFMEECSSTWSS-----CSSFMYTHNW 98 (235)
Q Consensus 32 L~e~g~~~~Ae~~arrAL~L-----~P~d---awA~halahvl~~~Gr~~egi~~l~~a~~~w~~-----~~~~l~~H~~ 98 (235)
+...|+|++|++.++++|++ -|++ +..+.+++.++..+|++++|+.+.+++...+.. .|. .+...
T Consensus 297 ~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~--~a~~l 374 (429)
T 3qwp_A 297 LKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPV--RGVQV 374 (429)
T ss_dssp HHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHH--HHHHH
T ss_pred HHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChH--HHHHH
Confidence 44689999999999999975 4555 467889999999999999999999999765532 222 23345
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHhhchhh
Q 026637 99 WHVALCYLEGHSPMRKVLEIYDNHIWKE 126 (235)
Q Consensus 99 WHlAL~~le~G~~~deAl~~yd~~i~~~ 126 (235)
..+|..|..+| ++++|+.+|.+++...
T Consensus 375 ~nLa~~~~~~g-~~~eA~~~~~~Al~i~ 401 (429)
T 3qwp_A 375 MKVGKLQLHQG-MFPQAMKNLRLAFDIM 401 (429)
T ss_dssp HHHHHHHHHTT-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcC-CHHHHHHHHHHHHHHH
Confidence 57999999998 9999999999998875
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.76 E-value=3.8e-05 Score=56.43 Aligned_cols=56 Identities=13% Similarity=0.015 Sum_probs=53.4
Q ss_pred hhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHH
Q 026637 4 PDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQ 59 (235)
Q Consensus 4 ~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~ 59 (235)
.+++...+++++..+|+++.++.++|+...+.|+|++|+...++.++.+|.++|.-
T Consensus 25 ~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~~~~ 80 (93)
T 3bee_A 25 TDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNLDRV 80 (93)
T ss_dssp CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTCCHH
T ss_pred CHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHH
Confidence 68999999999999999999999999999999999999999999999999988753
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=97.74 E-value=0.00023 Score=75.12 Aligned_cols=74 Identities=18% Similarity=0.273 Sum_probs=63.9
Q ss_pred CChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 026637 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEE 81 (235)
Q Consensus 2 G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~~ 81 (235)
|+.+++.+.++|+ +++.+++.+|.+++..|++.+|+..+.+| +|+.++..++.++...|+++++++++..
T Consensus 1090 ~nldrAiE~Aerv-----n~p~vWsqLAKAql~~G~~kEAIdsYiKA-----dD~say~eVa~~~~~lGkyEEAIeyL~m 1159 (1630)
T 1xi4_A 1090 GNLDRAYEFAERC-----NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQM 1159 (1630)
T ss_pred hhHHHHHHHHHhc-----CCHHHHHHHHHHHHhCCCHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4555666666655 67899999999999999999999999887 9999999999999999999999999977
Q ss_pred chhh
Q 026637 82 CSST 85 (235)
Q Consensus 82 a~~~ 85 (235)
+...
T Consensus 1160 Ark~ 1163 (1630)
T 1xi4_A 1160 ARKK 1163 (1630)
T ss_pred HHhh
Confidence 6543
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=97.70 E-value=0.00036 Score=62.29 Aligned_cols=110 Identities=11% Similarity=-0.036 Sum_probs=83.8
Q ss_pred HhhcC-CCCCChhHHHHHHHHHHH-----hC------CHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHc-----CCH
Q 026637 12 HQVLP-YNQQEDFIFGILAFSLLE-----LG------QMSDAEEAAKKGLKINKH--DCWSQHALCHVLQHD-----CCF 72 (235)
Q Consensus 12 ~ral~-~~p~~~~~~g~~Af~L~e-----~g------~~~~Ae~~arrAL~L~P~--dawA~halahvl~~~-----Gr~ 72 (235)
..++. ..|+++.++.-.|.++.. .| ...+|+.+.+||++++|+ ++-++..+|-.+... |+.
T Consensus 141 ~~~l~~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ 220 (301)
T 3u64_A 141 HKVLSRCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGM 220 (301)
T ss_dssp HHHHTTCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCH
T ss_pred HHHHHHcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCH
Confidence 33444 456666555555544422 23 356799999999999999 888999999998884 999
Q ss_pred HHHHHHHHHchhhhccCCcchhHHHHHHHHHHHHhC-CCCHHHHHHHHHhhchhh
Q 026637 73 KEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEG-HSPMRKVLEIYDNHIWKE 126 (235)
Q Consensus 73 ~egi~~l~~a~~~w~~~~~~l~~H~~WHlAL~~le~-G~~~deAl~~yd~~i~~~ 126 (235)
++|...++++....|+.+ +-.++. .|-++... | +++++.+.+++++...
T Consensus 221 ekA~~~ferAL~LnP~~~--id~~v~--YA~~l~~~~g-d~~~a~~~L~kAL~a~ 270 (301)
T 3u64_A 221 EKAHTAFEHLTRYCSAHD--PDHHIT--YADALCIPLN-NRAGFDEALDRALAID 270 (301)
T ss_dssp HHHHHHHHHHHHHCCTTC--SHHHHH--HHHHTTTTTT-CHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHhCCCCC--chHHHH--HHHHHHHhcC-CHHHHHHHHHHHHcCC
Confidence 999999999999998632 234554 78888774 6 9999999999999874
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=97.63 E-value=0.0067 Score=64.23 Aligned_cols=106 Identities=7% Similarity=-0.028 Sum_probs=77.5
Q ss_pred CCChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCC-------------------------
Q 026637 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHD------------------------- 55 (235)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~d------------------------- 55 (235)
.|+.++|.++..++ +++..+.-.+..+.+.|+|++|.+....|...+|+.
T Consensus 1118 ~G~~kEAIdsYiKA-----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rleele~fI~~ 1192 (1630)
T 1xi4_A 1118 KGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFING 1192 (1630)
T ss_pred CCCHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCHHHHHHHHhC
Confidence 47788888888775 667777778888888888888888887777666332
Q ss_pred --HHHHHHHHHHHHHcCCHHHHHHHHHHchhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026637 56 --CWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 125 (235)
Q Consensus 56 --awA~halahvl~~~Gr~~egi~~l~~a~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~ 125 (235)
...+..+|..++..|++++|+.++.++ -+|..+|.++..+| ++++|++.|.++..+
T Consensus 1193 ~n~ad~~~iGd~le~eg~YeeA~~~Y~kA-------------~ny~rLA~tLvkLg-e~q~AIEaarKA~n~ 1250 (1630)
T 1xi4_A 1193 PNNAHIQQVGDRCYDEKMYDAAKLLYNNV-------------SNFGRLASTLVHLG-EYQAAVDGARKANST 1250 (1630)
T ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHhh-------------hHHHHHHHHHHHhC-CHHHHHHHHHHhCCH
Confidence 224455777777777777777776653 26667888888887 899999999877554
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=97.58 E-value=0.00013 Score=67.57 Aligned_cols=88 Identities=7% Similarity=0.057 Sum_probs=73.9
Q ss_pred CCChhhHHHHHHhhcCC-----CCCChh---HHHHHHHHHHHhCCHHHHHHHHHHHHhh-----CCC---CHHHHHHHHH
Q 026637 1 MGRPDLCFDIIHQVLPY-----NQQEDF---IFGILAFSLLELGQMSDAEEAAKKGLKI-----NKH---DCWSQHALCH 64 (235)
Q Consensus 1 ~G~~~~al~~~~ral~~-----~p~~~~---~~g~~Af~L~e~g~~~~Ae~~arrAL~L-----~P~---dawA~halah 64 (235)
.|+.++++...++++.. -|++++ .+.++|.++..+|+|++|+..++++|++ -|+ -+..+.++|.
T Consensus 300 ~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~ 379 (429)
T 3qwp_A 300 HWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGK 379 (429)
T ss_dssp TTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHH
Confidence 37889999999999875 345554 6788888999999999999999999975 244 4577889999
Q ss_pred HHHHcCCHHHHHHHHHHchhhhcc
Q 026637 65 VLQHDCCFKEAVQFMEECSSTWSS 88 (235)
Q Consensus 65 vl~~~Gr~~egi~~l~~a~~~w~~ 88 (235)
++..+|++++|+..++++......
T Consensus 380 ~~~~~g~~~eA~~~~~~Al~i~~~ 403 (429)
T 3qwp_A 380 LQLHQGMFPQAMKNLRLAFDIMRV 403 (429)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999776544
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.58 E-value=0.00027 Score=62.38 Aligned_cols=124 Identities=10% Similarity=0.035 Sum_probs=97.9
Q ss_pred CChhhHHHHHHhhcCCCCCCh------hHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHc
Q 026637 2 GRPDLCFDIIHQVLPYNQQED------FIFGILAFSLLELGQMSDAEEAAKKGLKINKHD------CWSQHALCHVLQHD 69 (235)
Q Consensus 2 G~~~~al~~~~ral~~~p~~~------~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~d------awA~halahvl~~~ 69 (235)
|+++++...+.++++..+..+ .+..+++......|.+++|....++++...+.. +.....+|.++..+
T Consensus 69 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 148 (434)
T 4b4t_Q 69 GAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQK 148 (434)
T ss_dssp TCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHc
Confidence 889999999999998755432 466778888888999999999999999875543 56889999999999
Q ss_pred CCHHHHHHHHHHchhhhccCCc-chhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchhh
Q 026637 70 CCFKEAVQFMEECSSTWSSCSS-FMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE 126 (235)
Q Consensus 70 Gr~~egi~~l~~a~~~w~~~~~-~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~~ 126 (235)
|++++|+..+++....-...+. ....-.+.-.+..++..| ++++|..+|++.+...
T Consensus 149 g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~A~~~~~~al~~~ 205 (434)
T 4b4t_Q 149 KQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLR-NLAKSKASLTAARTAA 205 (434)
T ss_dssp TCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHH
T ss_pred cChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhC-cHHHHHHHHHHHHHHh
Confidence 9999999999998655333211 112234445888899998 9999999999887653
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=97.55 E-value=0.00035 Score=65.62 Aligned_cols=200 Identities=10% Similarity=-0.001 Sum_probs=87.9
Q ss_pred CCChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 026637 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME 80 (235)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~ 80 (235)
+|+.+++....+.+... ..++.+...+++.+..+|+++++++..+ .|+. .++..+|..+...|++++|+.++.
T Consensus 74 ~g~~EeAi~yl~~ark~-~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-----~pn~-~a~~~IGd~~~~~g~yeeA~~~Y~ 146 (449)
T 1b89_A 74 SGNWEELVKYLQMARKK-ARESYVETELIFALAKTNRLAELEEFIN-----GPNN-AHIQQVGDRCYDEKMYDAAKLLYN 146 (449)
T ss_dssp ------------------------------------CHHHHTTTTT-----CC-----------------CTTTHHHHHH
T ss_pred CCCHHHHHHHHHHHHHh-CccchhHHHHHHHHHHhCCHHHHHHHHc-----CCcH-HHHHHHHHHHHHcCCHHHHHHHHH
Confidence 36667777766666664 3336677777778888888888777664 3544 488888888888888888888887
Q ss_pred HchhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchhhhcCCCCCchHhHhHHHHHH--HHHH-hcCccc--
Q 026637 81 ECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNALGLL--LRVY-VRGELD-- 155 (235)
Q Consensus 81 ~a~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~~~~~~~~~~~~~~~da~sLL--~Rl~-l~G~~~-- 155 (235)
+. .+|.-+|.++..+| +|++|++.|.++..+. .-..+++++--+ ||+- ..|...
T Consensus 147 ~a-------------~n~~~LA~~L~~Lg-~yq~AVea~~KA~~~~-------~Wk~v~~aCv~~~ef~lA~~~~l~L~~ 205 (449)
T 1b89_A 147 NV-------------SNFGRLASTLVHLG-EYQAAVDGARKANSTR-------TWKEVCFACVDGKEFRLAQMCGLHIVV 205 (449)
T ss_dssp HT-------------TCHHHHHHHHHTTT-CHHHHHHHHHHHTCHH-------HHHHHHHHHHHTTCHHHHHHTTTTTTT
T ss_pred Hh-------------hhHHHHHHHHHHhc-cHHHHHHHHHHcCCch-------hHHHHHHHHHHcCcHHHHHHHHHHHHh
Confidence 55 25667999999998 9999999999885442 112233333222 1111 011100
Q ss_pred ------------ccccchHHHHHHHHhhh---cchhcchhhHHHHHHHhcCCCchHHHHHHHHHHHHhhcCch-HHHHHH
Q 026637 156 ------------VFGNRLKVLADCVADQA---NWYLECHLDLLILWALANTGEVSKAEDLLKGLKSRHSKMIK-KKQELM 219 (235)
Q Consensus 156 ------------~~g~rw~~la~~~~~~~---~~~~~~F~d~H~~~al~~ag~~~~~~~ll~~~~~~~~~~~~-~~~~~~ 219 (235)
.-..+|+++..++.... +.|...|.-+ +.+-++-. -+++.+.++.+.+..+- +.-+.+
T Consensus 206 ~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel----~il~~ky~--p~k~~ehl~~~~~~ini~k~~~~~ 279 (449)
T 1b89_A 206 HADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTEL----AILYSKFK--PQKMREHLELFWSRVNIPKVLRAA 279 (449)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHH----HHHHHTTC--HHHHHHHHHHHSTTSCHHHHHHHH
T ss_pred CHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHH----HHHHHhcC--HHHHHHHHHHHHHHhcCcHHHHHH
Confidence 00247888888877642 3355556555 44444433 58999999999876643 322333
Q ss_pred HHHHHHHHhhhhhhc
Q 026637 220 QTGVQVSSDICLICH 234 (235)
Q Consensus 220 ~~~~~l~~~~~~~~~ 234 (235)
...-+..+.+-+|||
T Consensus 280 ~~~~~w~e~~~ly~~ 294 (449)
T 1b89_A 280 EQAHLWAELVFLYDK 294 (449)
T ss_dssp HTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 333334445555554
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=97.52 E-value=0.00022 Score=52.48 Aligned_cols=66 Identities=14% Similarity=0.047 Sum_probs=54.1
Q ss_pred CCChhhHHHHHHhhcCCC-------CCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 026637 1 MGRPDLCFDIIHQVLPYN-------QQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVL 66 (235)
Q Consensus 1 ~G~~~~al~~~~ral~~~-------p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl 66 (235)
.|++..|..+.++|+... +..+.++..+|+++.+.|++++|....++|+.++|+++.+.+++...-
T Consensus 18 ~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n~~~~~ 90 (104)
T 2v5f_A 18 EADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNLKYFE 90 (104)
T ss_dssp TTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhhHHHHH
Confidence 477888888888888753 235678889999999999999999999999999999999988887433
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.49 E-value=0.00093 Score=51.41 Aligned_cols=79 Identities=13% Similarity=-0.037 Sum_probs=71.6
Q ss_pred ChhhHHHHHHhhcCCCCCChhHHHHHHHHHHH----hCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----cCCHHH
Q 026637 3 RPDLCFDIIHQVLPYNQQEDFIFGILAFSLLE----LGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQH----DCCFKE 74 (235)
Q Consensus 3 ~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e----~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~----~Gr~~e 74 (235)
..++++...+++... +++.+...+|..+.. .+++++|.+..++|.+. .++.+...++.++.. .++.++
T Consensus 40 ~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~ 115 (138)
T 1klx_A 40 NKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQ 115 (138)
T ss_dssp CHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHH
T ss_pred CHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHH
Confidence 455688888888876 789999999999998 89999999999999987 899999999999999 999999
Q ss_pred HHHHHHHchhh
Q 026637 75 AVQFMEECSST 85 (235)
Q Consensus 75 gi~~l~~a~~~ 85 (235)
|+.|++++...
T Consensus 116 A~~~~~~Aa~~ 126 (138)
T 1klx_A 116 AVKTFEKACRL 126 (138)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHC
Confidence 99999999776
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.42 E-value=0.00059 Score=55.18 Aligned_cols=85 Identities=11% Similarity=0.035 Sum_probs=70.3
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHchhhh-ccCCcchhHHHHHHHHHHHHhCCCCH
Q 026637 37 QMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDC---CFKEAVQFMEECSSTW-SSCSSFMYTHNWWHVALCYLEGHSPM 112 (235)
Q Consensus 37 ~~~~Ae~~arrAL~L~P~dawA~halahvl~~~G---r~~egi~~l~~a~~~w-~~~~~~l~~H~~WHlAL~~le~G~~~ 112 (235)
.+..+++.+.+.++.+|.+..+.+.+|+++.... ..++||..++...+.+ |..+ .-..-++|+.++..| +|
T Consensus 13 ~l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~----rd~lY~LAv~~~kl~-~Y 87 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQ----RDYVFYLAVGNYRLK-EY 87 (152)
T ss_dssp HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHH----HHHHHHHHHHHHHTS-CH
T ss_pred HHHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccch----HHHHHHHHHHHHHcc-CH
Confidence 3566888899999999999999999999999988 6669999999998887 4211 122335999999998 99
Q ss_pred HHHHHHHHhhchhh
Q 026637 113 RKVLEIYDNHIWKE 126 (235)
Q Consensus 113 deAl~~yd~~i~~~ 126 (235)
++|++.+++.+..+
T Consensus 88 ~~A~~y~~~lL~ie 101 (152)
T 1pc2_A 88 EKALKYVRGLLQTE 101 (152)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhcC
Confidence 99999999999873
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=97.35 E-value=0.0048 Score=60.50 Aligned_cols=185 Identities=11% Similarity=-0.069 Sum_probs=125.4
Q ss_pred hHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHH-HHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchh
Q 026637 6 LCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAE-EAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSS 84 (235)
Q Consensus 6 ~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae-~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~~a~~ 84 (235)
..+...++++...|.++.+..+++--+...|+.++|. ++..+|+..+|++..-+...+...+..|+++++...++++..
T Consensus 327 Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~ 406 (679)
T 4e6h_A 327 RMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCID 406 (679)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3456788999999999999999999999999999996 999999999999998888999999999999999999999976
Q ss_pred hhc--------cCCc---------chhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchh-hhcCCCCCchHhHhHHHHHHH
Q 026637 85 TWS--------SCSS---------FMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK-ELEKPDAVHPEVYLNALGLLL 146 (235)
Q Consensus 85 ~w~--------~~~~---------~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~-~~~~~~~~~~~~~~da~sLL~ 146 (235)
.-+ +.|. +-..-+|-..+-+....| ..++|..+|++++.. . .. ....++..+.|-+
T Consensus 407 ~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~-~l~~AR~vf~~A~~~~~--~~---~~~lyi~~A~lE~ 480 (679)
T 4e6h_A 407 RIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQ-GLAASRKIFGKCRRLKK--LV---TPDIYLENAYIEY 480 (679)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHHHTGG--GS---CTHHHHHHHHHHH
T ss_pred HHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhcC--CC---ChHHHHHHHHHHH
Confidence 421 1121 001225655666665666 699999999999865 2 11 2444666666665
Q ss_pred HHHhcCcccccccchHHHHHHHHhhhc-chhcchhhHHHHHHHhcCCCchHHHHHHHHHH
Q 026637 147 RVYVRGELDVFGNRLKVLADCVADQAN-WYLECHLDLLILWALANTGEVSKAEDLLKGLK 205 (235)
Q Consensus 147 Rl~l~G~~~~~g~rw~~la~~~~~~~~-~~~~~F~d~H~~~al~~ag~~~~~~~ll~~~~ 205 (235)
++ |-+. ++-..|.+......+ +...+ +.|+--+...|+.+.++.+.+..-
T Consensus 481 ~~---~~d~---e~Ar~ife~~Lk~~p~~~~~w---~~y~~fe~~~~~~~~AR~lferal 531 (679)
T 4e6h_A 481 HI---SKDT---KTACKVLELGLKYFATDGEYI---NKYLDFLIYVNEESQVKSLFESSI 531 (679)
T ss_dssp TT---TSCC---HHHHHHHHHHHHHHTTCHHHH---HHHHHHHHHHTCHHHHHHHHHHHT
T ss_pred Hh---CCCH---HHHHHHHHHHHHHCCCchHHH---HHHHHHHHhCCCHHHHHHHHHHHH
Confidence 54 3221 344444443333222 22211 122222334578888888877543
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=97.24 E-value=0.002 Score=47.25 Aligned_cols=69 Identities=9% Similarity=-0.004 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHchhhhccCC--cchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026637 56 CWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCS--SFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 125 (235)
Q Consensus 56 awA~halahvl~~~Gr~~egi~~l~~a~~~w~~~~--~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~ 125 (235)
+.--..+|.+++.+|+++.|+.|++.+...++..+ ++-...++-++|.+++..| ++++|+..|.+.+.-
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g-~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQG-DLDKALLLTKKLLEL 75 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHcc-CHHHHHHHHHHHHhc
Confidence 34456899999999999999999999988875432 2334556677999999998 999999999998866
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=97.23 E-value=0.0018 Score=57.88 Aligned_cols=113 Identities=11% Similarity=0.095 Sum_probs=87.8
Q ss_pred HHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHchh
Q 026637 7 CFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINK--HDCWSQHALCHVLQHDCCFKEAVQFMEECSS 84 (235)
Q Consensus 7 al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P--~dawA~halahvl~~~Gr~~egi~~l~~a~~ 84 (235)
++..+++.+...+..+..+.++|-++...|++++|.+...+++..+| ++..+....+.++...||++.|...+++...
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 44566777766556677778999999999999999999999999997 8999999999999999999999999988766
Q ss_pred hhc-----cCCcchhHHHHHHHHHH--HH-hCCCCHHHHHHHHHhhchh
Q 026637 85 TWS-----SCSSFMYTHNWWHVALC--YL-EGHSPMRKVLEIYDNHIWK 125 (235)
Q Consensus 85 ~w~-----~~~~~l~~H~~WHlAL~--~l-e~G~~~deAl~~yd~~i~~ 125 (235)
..| ++. . -. .++-. .+ ..|+++.+|..+|++....
T Consensus 165 ~~~d~~~~~d~-~---l~--~Laea~v~l~~g~~~~q~A~~~f~El~~~ 207 (310)
T 3mv2_B 165 AIEDTVSGDNE-M---IL--NLAESYIKFATNKETATSNFYYYEELSQT 207 (310)
T ss_dssp HSCHHHHHHHH-H---HH--HHHHHHHHHHHTCSTTTHHHHHHHHHHTT
T ss_pred cCccccccchH-H---HH--HHHHHHHHHHhCCccHHHHHHHHHHHHHh
Confidence 654 332 1 11 13322 22 2334899999999995443
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.15 E-value=0.0011 Score=53.63 Aligned_cols=84 Identities=8% Similarity=-0.126 Sum_probs=76.1
Q ss_pred hhHHHHHHhhcCCCCCChhHHHHHHHHHHHhC---CHHHHHHHHHHHHhhC-C-CCHHHHHHHHHHHHHcCCHHHHHHHH
Q 026637 5 DLCFDIIHQVLPYNQQEDFIFGILAFSLLELG---QMSDAEEAAKKGLKIN-K-HDCWSQHALCHVLQHDCCFKEAVQFM 79 (235)
Q Consensus 5 ~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g---~~~~Ae~~arrAL~L~-P-~dawA~halahvl~~~Gr~~egi~~l 79 (235)
..+++...+.++..|.+......+|++|...+ ++++++.+.+..+..+ | +....+..+|-.++..|++++|+.++
T Consensus 15 ~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~ 94 (152)
T 1pc2_A 15 LKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYV 94 (152)
T ss_dssp HHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHH
Confidence 45667777777778889999999999999988 7789999999999999 8 66899999999999999999999999
Q ss_pred HHchhhhcc
Q 026637 80 EECSSTWSS 88 (235)
Q Consensus 80 ~~a~~~w~~ 88 (235)
+...+..|.
T Consensus 95 ~~lL~ieP~ 103 (152)
T 1pc2_A 95 RGLLQTEPQ 103 (152)
T ss_dssp HHHHHHCTT
T ss_pred HHHHhcCCC
Confidence 999999977
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=97.10 E-value=0.0044 Score=60.77 Aligned_cols=189 Identities=8% Similarity=0.051 Sum_probs=121.3
Q ss_pred CChhhHH-HHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhh-----------CCC-----------CHHH
Q 026637 2 GRPDLCF-DIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKI-----------NKH-----------DCWS 58 (235)
Q Consensus 2 G~~~~al-~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L-----------~P~-----------dawA 58 (235)
|+.++++ ...+|++...|.+..++-.++-..+..|++++|.+++++++.. +|. .+..
T Consensus 357 ~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~v 436 (679)
T 4e6h_A 357 NTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYV 436 (679)
T ss_dssp SCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHH
Confidence 5667786 9999999999999988888999999999999999999999985 253 2335
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHchhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchhhhcCCCCCchHhH
Q 026637 59 QHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVY 138 (235)
Q Consensus 59 ~halahvl~~~Gr~~egi~~l~~a~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~~~~~~~~~~~~~~ 138 (235)
+-..+......|..+.+...+.++...-|.+. .++|...|......|++++.|.++|++.+... .+. ..-+
T Consensus 437 Wi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~----~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~--p~~---~~~w 507 (679)
T 4e6h_A 437 YCVYMNTMKRIQGLAASRKIFGKCRRLKKLVT----PDIYLENAYIEYHISKDTKTACKVLELGLKYF--ATD---GEYI 507 (679)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSC----THHHHHHHHHHHTTTSCCHHHHHHHHHHHHHH--TTC---HHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCC----hHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC--CCc---hHHH
Confidence 55666777778999999999999977633322 35665566665555546899999999999873 221 2112
Q ss_pred hHHHHHHHHHHhcCcccccccchHHHHHHHHhhhc---chhcchhhHHHHHHHhcCCCchHHHHHHHHHHHHh
Q 026637 139 LNALGLLLRVYVRGELDVFGNRLKVLADCVADQAN---WYLECHLDLLILWALANTGEVSKAEDLLKGLKSRH 208 (235)
Q Consensus 139 ~da~sLL~Rl~l~G~~~~~g~rw~~la~~~~~~~~---~~~~~F~d~H~~~al~~ag~~~~~~~ll~~~~~~~ 208 (235)
+--+-+++.+ |- -++=..+.+....... .....|.-..-. =...|..+.++.+.+.+...-
T Consensus 508 ~~y~~fe~~~---~~----~~~AR~lferal~~~~~~~~~~~lw~~~~~f--E~~~G~~~~~~~v~~R~~~~~ 571 (679)
T 4e6h_A 508 NKYLDFLIYV---NE----ESQVKSLFESSIDKISDSHLLKMIFQKVIFF--ESKVGSLNSVRTLEKRFFEKF 571 (679)
T ss_dssp HHHHHHHHHH---TC----HHHHHHHHHHHTTTSSSTTHHHHHHHHHHHH--HHHTCCSHHHHHHHHHHHHHS
T ss_pred HHHHHHHHhC---CC----HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--HHHcCCHHHHHHHHHHHHHhC
Confidence 2223333332 21 2344455555444332 122122211111 124577777777777766554
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=96.46 E-value=0.18 Score=47.27 Aligned_cols=164 Identities=10% Similarity=-0.021 Sum_probs=100.7
Q ss_pred HHHHhCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCC---------HHHHHHHHHHchhhhccCCcchhHHHHH
Q 026637 31 SLLELGQMSDAEEAAKKGLKI--NKHDCWSQHALCHVLQHDCC---------FKEAVQFMEECSSTWSSCSSFMYTHNWW 99 (235)
Q Consensus 31 ~L~e~g~~~~Ae~~arrAL~L--~P~dawA~halahvl~~~Gr---------~~egi~~l~~a~~~w~~~~~~l~~H~~W 99 (235)
++...|++++|.+++++..+. .| |...+.++-+++...|+ .++|...+++-...--. |+. .+.+.
T Consensus 35 ~c~k~G~~~~A~~lf~~M~~~Gv~p-d~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~-Pd~-~tyn~- 110 (501)
T 4g26_A 35 MCSKKGDVLEALRLYDEARRNGVQL-SQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVV-PNE-ATFTN- 110 (501)
T ss_dssp HTTTSCCHHHHHHHHHHHHHHTCCC-CHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCC-CCH-HHHHH-
T ss_pred HHHhCCCHHHHHHHHHHHHHcCCCC-CHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCC-CCH-HHHHH-
Confidence 556789999999999988764 44 56678888887765544 68899998877654333 322 22232
Q ss_pred HHHHHHHhCCCCHHHHHHHHHhhchhhhcCCCCCchHhHhHHHHHHHHHHhcCcccccccchHHHHHHHHhhhcchhc--
Q 026637 100 HVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNALGLLLRVYVRGELDVFGNRLKVLADCVADQANWYLE-- 177 (235)
Q Consensus 100 HlAL~~le~G~~~deAl~~yd~~i~~~~~~~~~~~~~~~~da~sLL~Rl~l~G~~~~~g~rw~~la~~~~~~~~~~~~-- 177 (235)
+--.+...| +.++|+++|++...... +.+...+..++++.+ -.| +++.....+..-...++.
T Consensus 111 -lI~~~~~~g-~~~~A~~l~~~M~~~g~-~Pd~~tyn~lI~~~~------~~g-------~~~~A~~l~~~M~~~G~~Pd 174 (501)
T 4g26_A 111 -GARLAVAKD-DPEMAFDMVKQMKAFGI-QPRLRSYGPALFGFC------RKG-------DADKAYEVDAHMVESEVVPE 174 (501)
T ss_dssp -HHHHHHHHT-CHHHHHHHHHHHHHTTC-CCCHHHHHHHHHHHH------HTT-------CHHHHHHHHHHHHHTTCCCC
T ss_pred -HHHHHHhcC-CHHHHHHHHHHHHHcCC-CCccceehHHHHHHH------HCC-------CHHHHHHHHHHHHhcCCCCC
Confidence 444555667 89999999998877654 222223333444332 122 122222222221111111
Q ss_pred --chhhHHHHHHHhcCCCchHHHHHHHHHHHHhhcCchHHH
Q 026637 178 --CHLDLLILWALANTGEVSKAEDLLKGLKSRHSKMIKKKQ 216 (235)
Q Consensus 178 --~F~d~H~~~al~~ag~~~~~~~ll~~~~~~~~~~~~~~~ 216 (235)
.|+-+ +=+++++|+.+.+.++++.|+......+..+-
T Consensus 175 ~~ty~~L--i~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~ 213 (501)
T 4g26_A 175 EPELAAL--LKVSMDTKNADKVYKTLQRLRDLVRQVSKSTF 213 (501)
T ss_dssp HHHHHHH--HHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHH
T ss_pred HHHHHHH--HHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHH
Confidence 13322 55788999999999999999988766444433
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=96.32 E-value=0.019 Score=44.94 Aligned_cols=85 Identities=11% Similarity=0.020 Sum_probs=70.3
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHH---HHHHHHHchhhh-ccCCcchhHHHHHHHHHHHHhCCCCH
Q 026637 37 QMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKE---AVQFMEECSSTW-SSCSSFMYTHNWWHVALCYLEGHSPM 112 (235)
Q Consensus 37 ~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~e---gi~~l~~a~~~w-~~~~~~l~~H~~WHlAL~~le~G~~~ 112 (235)
.+..+++.+.++++.++.+..+.+.+|+++.......+ ||..++.-.+.. |.. .--..-++|+.++..| +|
T Consensus 16 ~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~----~Rd~lY~LAvg~yklg-~Y 90 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEE----QRDYVFYLAVGNYRLK-EY 90 (126)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHH----HHHHHHHHHHHHHHTT-CH
T ss_pred HHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcch----HHHHHHHHHHHHHHhh-hH
Confidence 45668888899999999999999999999999999988 999999987764 211 1122335999999998 99
Q ss_pred HHHHHHHHhhchhh
Q 026637 113 RKVLEIYDNHIWKE 126 (235)
Q Consensus 113 deAl~~yd~~i~~~ 126 (235)
++|++.++..+..+
T Consensus 91 ~~A~~~~~~lL~~e 104 (126)
T 1nzn_A 91 EKALKYVRGLLQTE 104 (126)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhC
Confidence 99999999999873
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=96.23 E-value=0.0081 Score=56.34 Aligned_cols=77 Identities=12% Similarity=0.152 Sum_probs=51.8
Q ss_pred CCChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 026637 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME 80 (235)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~ 80 (235)
+|+.++|.+.++++ +++..+....+++.+.|++++|...+.. |..+|++.. .+...++..|+++|++..++
T Consensus 161 Lg~yq~AVea~~KA-----~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-L~~~ad~l~---~lv~~Yek~G~~eEai~lLe 231 (449)
T 1b89_A 161 LGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQMCGLH-IVVHADELE---ELINYYQDRGYFEELITMLE 231 (449)
T ss_dssp TTCHHHHHHHHHHH-----TCHHHHHHHHHHHHHTTCHHHHHHTTTT-TTTCHHHHH---HHHHHHHHTTCHHHHHHHHH
T ss_pred hccHHHHHHHHHHc-----CCchhHHHHHHHHHHcCcHHHHHHHHHH-HHhCHhhHH---HHHHHHHHCCCHHHHHHHHH
Confidence 46666777777766 3556666666777777777777666553 445555533 46677888888888888888
Q ss_pred Hchhhh
Q 026637 81 ECSSTW 86 (235)
Q Consensus 81 ~a~~~w 86 (235)
+.....
T Consensus 232 ~aL~le 237 (449)
T 1b89_A 232 AALGLE 237 (449)
T ss_dssp HHTTST
T ss_pred HHhCCc
Confidence 876554
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.20 E-value=0.027 Score=46.05 Aligned_cols=93 Identities=15% Similarity=0.065 Sum_probs=71.2
Q ss_pred HHHHHHhCCHHHHHHHHHHHHhhCCCCHH---------HHHHHHHHHHHcCCHHHHHHHHHHchhhhcc---CC------
Q 026637 29 AFSLLELGQMSDAEEAAKKGLKINKHDCW---------SQHALCHVLQHDCCFKEAVQFMEECSSTWSS---CS------ 90 (235)
Q Consensus 29 Af~L~e~g~~~~Ae~~arrAL~L~P~daw---------A~halahvl~~~Gr~~egi~~l~~a~~~w~~---~~------ 90 (235)
.-.+.+.|.|+-|+-++..++++..+++. ++..+|.+++.+|++..|...++++...-.. .+
T Consensus 27 ik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~ 106 (167)
T 3ffl_A 27 VRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPST 106 (167)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC----------
T ss_pred HHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccccc
Confidence 33577899999999999999988877776 7899999999999999999999996332211 01
Q ss_pred -----------cchhHHHHHHHHHHHHhCCCCHHHHHHHHHhh
Q 026637 91 -----------SFMYTHNWWHVALCYLEGHSPMRKVLEIYDNH 122 (235)
Q Consensus 91 -----------~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~ 122 (235)
.+-...+-..+|.||++.| ++++|+.+.+.-
T Consensus 107 ~~~ss~p~s~~~~~e~Elkykia~C~~~l~-~~~~Ai~~Le~I 148 (167)
T 3ffl_A 107 GNSASTPQSQCLPSEIEVKYKLAECYTVLK-QDKDAIAILDGI 148 (167)
T ss_dssp ----------CCCCHHHHHHHHHHHHHHTT-CHHHHHHHHHTS
T ss_pred cccCCCcccccccchHHHHHHHHHHHHHHC-CHHHHHHHHhcC
Confidence 0111233345999999998 999999999553
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=95.95 E-value=0.062 Score=50.11 Aligned_cols=114 Identities=11% Similarity=0.089 Sum_probs=83.0
Q ss_pred hhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH-------------------
Q 026637 5 DLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHV------------------- 65 (235)
Q Consensus 5 ~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahv------------------- 65 (235)
.......++++...|.++.+.-+++--+...|+.++|..+.+||+.. |++..-....+..
T Consensus 196 ~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~e~~~~~~~l~~~~~~~~~ 274 (493)
T 2uy1_A 196 SRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVMDEEAVYGDLKRKYSMGEA 274 (493)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHTTCTHHHHHHHHHTC----
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhcchhHHHHHHHHHHHhhcc
Confidence 34567888999888999998988988889999999999999999999 9996544333221
Q ss_pred ---------------------HHHcCCHHHHHHHHHHchhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhch
Q 026637 66 ---------------------LQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIW 124 (235)
Q Consensus 66 ---------------------l~~~Gr~~egi~~l~~a~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~ 124 (235)
....|..+.+...++++ ..|.+ ..|.|.-.|.+-+..|++.+.|..+|+..+.
T Consensus 275 ~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A--~~~~~----~~~v~i~~A~lE~~~~~d~~~ar~ife~al~ 348 (493)
T 2uy1_A 275 ESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL--GNEGV----GPHVFIYCAFIEYYATGSRATPYNIFSSGLL 348 (493)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH--TTSCC----CHHHHHHHHHHHHHHHCCSHHHHHHHHHHHH
T ss_pred chhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh--hCCCC----ChHHHHHHHHHHHHHCCChHHHHHHHHHHHH
Confidence 11255677777777777 22321 2467655666555444368999999999887
Q ss_pred h
Q 026637 125 K 125 (235)
Q Consensus 125 ~ 125 (235)
.
T Consensus 349 ~ 349 (493)
T 2uy1_A 349 K 349 (493)
T ss_dssp H
T ss_pred H
Confidence 6
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=95.45 E-value=0.12 Score=46.82 Aligned_cols=83 Identities=11% Similarity=-0.073 Sum_probs=53.8
Q ss_pred CChhhHHHHHHhhcCCCCCCh--------hH--------------HHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHH
Q 026637 2 GRPDLCFDIIHQVLPYNQQED--------FI--------------FGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQ 59 (235)
Q Consensus 2 G~~~~al~~~~ral~~~p~~~--------~~--------------~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~ 59 (235)
|+.+.+.+..++|+..|.+.. ++ .-.++-.+.+.|++++|....+++++.+|-+-.++
T Consensus 129 ~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~ 208 (388)
T 2ff4_A 129 GRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTFEHPYREPLW 208 (388)
T ss_dssp TCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHH
T ss_pred CCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 677788889999999875322 11 11222334456677777777777777777776666
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHchh
Q 026637 60 HALCHVLQHDCCFKEAVQFMEECSS 84 (235)
Q Consensus 60 halahvl~~~Gr~~egi~~l~~a~~ 84 (235)
-.+-.+++..||..+|++.+++..+
T Consensus 209 ~~lm~al~~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 209 TQLITAYYLSDRQSDALGAYRRVKT 233 (388)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 6666677777777777766666544
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=95.15 E-value=0.15 Score=47.41 Aligned_cols=113 Identities=4% Similarity=-0.092 Sum_probs=79.1
Q ss_pred CChhhHHHHHHhhcCCCCCChhHHHHHHHH----------------------------------------HHHhCCHHHH
Q 026637 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFS----------------------------------------LLELGQMSDA 41 (235)
Q Consensus 2 G~~~~al~~~~ral~~~p~~~~~~g~~Af~----------------------------------------L~e~g~~~~A 41 (235)
|+.+.++...+|++.. |.+..+...++-. +...+..++|
T Consensus 227 ~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~A 305 (493)
T 2uy1_A 227 GQKEKAKKVVERGIEM-SDGMFLSLYYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELF 305 (493)
T ss_dssp TCHHHHHHHHHHHHHH-CCSSHHHHHHHHHTTCTHHHHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHH
T ss_pred CCHHHHHHHHHHHHhC-CCcHHHHHHHHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHH
Confidence 6788888888888888 8765443333221 1135678999
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHchhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 026637 42 EEAAKKGLKINKHDCWSQHALCHVLQHDC-CFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYD 120 (235)
Q Consensus 42 e~~arrAL~L~P~dawA~halahvl~~~G-r~~egi~~l~~a~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd 120 (235)
.++..+| ...+.....+-..|..-...| +.+.|...++......|+.| .+||-.+-+....| +.+.|..+|+
T Consensus 306 R~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~-----~~~~~yid~e~~~~-~~~~aR~l~e 378 (493)
T 2uy1_A 306 RKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDST-----LLKEEFFLFLLRIG-DEENARALFK 378 (493)
T ss_dssp HHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCH-----HHHHHHHHHHHHHT-CHHHHHHHHH
T ss_pred HHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCH-----HHHHHHHHHHHHcC-CHHHHHHHHH
Confidence 9999999 433334444444454444455 59999999999998887643 35667777778887 8999999998
Q ss_pred hh
Q 026637 121 NH 122 (235)
Q Consensus 121 ~~ 122 (235)
+.
T Consensus 379 r~ 380 (493)
T 2uy1_A 379 RL 380 (493)
T ss_dssp HS
T ss_pred HH
Confidence 85
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=94.84 E-value=0.46 Score=44.37 Aligned_cols=116 Identities=10% Similarity=-0.099 Sum_probs=84.1
Q ss_pred hhHHHHHHhhcCC-CCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 026637 5 DLCFDIIHQVLPY-NQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKI--NKHDCWSQHALCHVLQHDCCFKEAVQFMEE 81 (235)
Q Consensus 5 ~~al~~~~ral~~-~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L--~P~dawA~halahvl~~~Gr~~egi~~l~~ 81 (235)
+.+++..++.... .+.+...++.+--++...|++++|+++.++-.+. .| |...+.++-..+...|+.++|...+++
T Consensus 87 ~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~P-d~~tyn~lI~~~~~~g~~~~A~~l~~~ 165 (501)
T 4g26_A 87 SRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQP-RLRSYGPALFGFCRKGDADKAYEVDAH 165 (501)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-ccceehHHHHHHHHCCCHHHHHHHHHH
Confidence 4455555544332 2346677778878899999999999999987764 45 577899999999999999999999998
Q ss_pred chhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchhh
Q 026637 82 CSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE 126 (235)
Q Consensus 82 a~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~~ 126 (235)
-...--. |+. .+.+. +=-.+...| +.|+|.+++++.-...
T Consensus 166 M~~~G~~-Pd~-~ty~~--Li~~~~~~g-~~d~A~~ll~~Mr~~g 205 (501)
T 4g26_A 166 MVESEVV-PEE-PELAA--LLKVSMDTK-NADKVYKTLQRLRDLV 205 (501)
T ss_dssp HHHTTCC-CCH-HHHHH--HHHHHHHTT-CHHHHHHHHHHHHHHT
T ss_pred HHhcCCC-CCH-HHHHH--HHHHHhhCC-CHHHHHHHHHHHHHhC
Confidence 8665433 332 22222 444555677 9999999998876654
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.56 E-value=0.2 Score=40.89 Aligned_cols=67 Identities=13% Similarity=0.027 Sum_probs=53.8
Q ss_pred hHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCC-------------------------CHHHHHHHHHHHHHcCCHHHHHH
Q 026637 23 FIFGILAFSLLELGQMSDAEEAAKKGLKINKH-------------------------DCWSQHALCHVLQHDCCFKEAVQ 77 (235)
Q Consensus 23 ~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~-------------------------dawA~halahvl~~~Gr~~egi~ 77 (235)
.++.++|-++-.+|+|.+|+..+++||.+... +...-.-++.++...|++++|+.
T Consensus 64 ~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~ 143 (167)
T 3ffl_A 64 QLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIA 143 (167)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--------------------CCCCHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHH
Confidence 38899999999999999999999999775431 12466889999999999999999
Q ss_pred HHHHchhhhccCC
Q 026637 78 FMEECSSTWSSCS 90 (235)
Q Consensus 78 ~l~~a~~~w~~~~ 90 (235)
.|+. ++.+.+.|
T Consensus 144 ~Le~-Ip~k~Rt~ 155 (167)
T 3ffl_A 144 ILDG-IPSRQRTP 155 (167)
T ss_dssp HHHT-SCGGGCCH
T ss_pred HHhc-CCchhcCH
Confidence 9985 34444433
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=92.14 E-value=0.83 Score=36.93 Aligned_cols=98 Identities=12% Similarity=0.003 Sum_probs=78.4
Q ss_pred hhHHHHHHhhcCCCC--------CChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 026637 5 DLCFDIIHQVLPYNQ--------QEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAV 76 (235)
Q Consensus 5 ~~al~~~~ral~~~p--------~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi 76 (235)
++.++..+||+..-| .|.|.+--+|. +++.++.++|...++.++.++.+.+-.+-.-|+--..+|+.+.|.
T Consensus 36 ~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~-~~ei~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kAR 114 (161)
T 4h7y_A 36 NKLIGRYSQAIEALPPDKYGQNESFARIQVRFAE-LKAIQEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSK 114 (161)
T ss_dssp HHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHH-HHHHHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHcCCccccccHHHHHHHHHHHHH-HHHhcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHH
Confidence 778888888887544 35566666664 478899999999999999999999888888888889999999999
Q ss_pred HHHHHchhhhccCCcchhHHHHHHHHHHHHhCC
Q 026637 77 QFMEECSSTWSSCSSFMYTHNWWHVALCYLEGH 109 (235)
Q Consensus 77 ~~l~~a~~~w~~~~~~l~~H~~WHlAL~~le~G 109 (235)
..+.+++..-|. |. .. .-.|+.-|..|
T Consensus 115 kILg~AiG~~~k-~~----~~-le~a~~nl~~~ 141 (161)
T 4h7y_A 115 QLLQKAVERGAV-PL----EM-LEIALRNLNLQ 141 (161)
T ss_dssp HHHHHHHHTTCB-CH----HH-HHHHHHHHHTT
T ss_pred HHHHHHhccCCC-cH----HH-HHHHHHhhhcC
Confidence 999999998776 31 22 13677777765
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=89.82 E-value=0.94 Score=35.11 Aligned_cols=83 Identities=10% Similarity=-0.117 Sum_probs=65.1
Q ss_pred hHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHH---HHHHHHHHHhhC-C-CCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 026637 6 LCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSD---AEEAAKKGLKIN-K-HDCWSQHALCHVLQHDCCFKEAVQFME 80 (235)
Q Consensus 6 ~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~---Ae~~arrAL~L~-P-~dawA~halahvl~~~Gr~~egi~~l~ 80 (235)
.+++...+.++..+........+|++|.....-.. ++.+.+.-+.-+ | +.-..+.-+|-.++..|++++|+.+++
T Consensus 19 ~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~ 98 (126)
T 1nzn_A 19 KFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVR 98 (126)
T ss_dssp HHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 44555566666566777888888888888775555 888888888776 5 566788888889999999999999999
Q ss_pred Hchhhhcc
Q 026637 81 ECSSTWSS 88 (235)
Q Consensus 81 ~a~~~w~~ 88 (235)
...+..|.
T Consensus 99 ~lL~~eP~ 106 (126)
T 1nzn_A 99 GLLQTEPQ 106 (126)
T ss_dssp HHHHHCTT
T ss_pred HHHHhCCC
Confidence 88888876
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=88.90 E-value=4.9 Score=36.04 Aligned_cols=85 Identities=11% Similarity=0.044 Sum_probs=65.5
Q ss_pred HhCCHHHHHHHHHHHHhhCC--------CCHHHH--------------HHHHHHHHHcCCHHHHHHHHHHchhhhccCCc
Q 026637 34 ELGQMSDAEEAAKKGLKINK--------HDCWSQ--------------HALCHVLQHDCCFKEAVQFMEECSSTWSSCSS 91 (235)
Q Consensus 34 e~g~~~~Ae~~arrAL~L~P--------~dawA~--------------halahvl~~~Gr~~egi~~l~~a~~~w~~~~~ 91 (235)
..|+.++|.+..++||++=. ...|+. ..++..+...|++++++..+++.....|-.
T Consensus 127 ~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~-- 204 (388)
T 2ff4_A 127 AAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTFEHPYR-- 204 (388)
T ss_dssp HTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC--
T ss_pred hCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC--
Confidence 46889999999999999853 334543 346677889999999999999998887663
Q ss_pred chhHHHHHHHHHHHHhCCCCHHHHHHHHHhhch
Q 026637 92 FMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIW 124 (235)
Q Consensus 92 ~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~ 124 (235)
-..+-.+-.++...| +..+|++.|++.-.
T Consensus 205 ---E~~~~~lm~al~~~G-r~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 205 ---EPLWTQLITAYYLSD-RQSDALGAYRRVKT 233 (388)
T ss_dssp ---HHHHHHHHHHHHTTT-CHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHcC-CHHHHHHHHHHHHH
Confidence 345556777778888 99999999976543
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=88.73 E-value=2.1 Score=33.57 Aligned_cols=66 Identities=8% Similarity=-0.049 Sum_probs=53.8
Q ss_pred CHHHHHHHHHHHHHcCCHH---HHHHHHHHchhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026637 55 DCWSQHALCHVLQHDCCFK---EAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 125 (235)
Q Consensus 55 dawA~halahvl~~~Gr~~---egi~~l~~a~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~ 125 (235)
++.+.++.|+++......+ +||..+++-.+..|.. ..-....+|+.++..| +|++|++..+..+..
T Consensus 39 s~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~----~Rd~LYyLAvg~yklg-dY~~Ar~y~d~lL~~ 107 (134)
T 3o48_A 39 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESR----RRECLYYLTIGCYKLG-EYSMAKRYVDTLFEH 107 (134)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGG----HHHHHHHHHHHHHHHT-CHHHHHHHHHHHHTT
T ss_pred ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcch----hHHHHHHHHHHHHHhh-hHHHHHHHHHHHHhh
Confidence 6789999999999888764 6999999887765431 2345567999999998 999999999998876
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=88.13 E-value=0.73 Score=36.23 Aligned_cols=67 Identities=7% Similarity=-0.164 Sum_probs=35.6
Q ss_pred hhHHHHHHHHHHHhCCH---HHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhhcc
Q 026637 22 DFIFGILAFSLLELGQM---SDAEEAAKKGLKINK-HDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSS 88 (235)
Q Consensus 22 ~~~~g~~Af~L~e~g~~---~~Ae~~arrAL~L~P-~dawA~halahvl~~~Gr~~egi~~l~~a~~~w~~ 88 (235)
+.....+|++|.....- .+++.+.+..+.-+| +.-.-+.-+|-.++..|++++|..+.+...+..|.
T Consensus 40 ~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~ 110 (134)
T 3o48_A 40 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERN 110 (134)
T ss_dssp HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTT
T ss_pred hhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCC
Confidence 34555555555555422 235555555555555 22444555555555566666666666555555554
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=87.53 E-value=1.9 Score=42.80 Aligned_cols=59 Identities=14% Similarity=0.075 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc
Q 026637 24 IFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEEC 82 (235)
Q Consensus 24 ~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~~a 82 (235)
.+..-+--|...|+|+-|.++|++|+.+.|.+--.+..|+.||...|+++.|+-.+..+
T Consensus 339 LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 339 LLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 34444444556899999999999999999999999999999999999999999998877
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=87.51 E-value=0.78 Score=36.50 Aligned_cols=70 Identities=7% Similarity=-0.158 Sum_probs=47.9
Q ss_pred CCChhHHHHHHHHHHHhCCH---HHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhhcc
Q 026637 19 QQEDFIFGILAFSLLELGQM---SDAEEAAKKGLKINK-HDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSS 88 (235)
Q Consensus 19 p~~~~~~g~~Af~L~e~g~~---~~Ae~~arrAL~L~P-~dawA~halahvl~~~Gr~~egi~~l~~a~~~w~~ 88 (235)
.-.+.....+|++|.....- .+++.+.+.-+.-.| +.-.-+.-+|-.++..|++++|..+.+...+..|.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~ 109 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERN 109 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC
Confidence 34556667777777776633 357777777777666 34566777777777777777777777777777766
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=86.79 E-value=5.7 Score=32.04 Aligned_cols=99 Identities=11% Similarity=0.040 Sum_probs=76.4
Q ss_pred CCCChhHHHHHHHHHHHhCCH------HHHHHHHHHHHhhCCCCH----------HHHHHHHHHHHHcCCHHHHHHHHHH
Q 026637 18 NQQEDFIFGILAFSLLELGQM------SDAEEAAKKGLKINKHDC----------WSQHALCHVLQHDCCFKEAVQFMEE 81 (235)
Q Consensus 18 ~p~~~~~~g~~Af~L~e~g~~------~~Ae~~arrAL~L~P~da----------wA~halahvl~~~Gr~~egi~~l~~ 81 (235)
.|.++.....+.--++..|+. ++=.+.++||++--|-+- |.-.++ +...++.+++...+..
T Consensus 9 ~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~---~~ei~D~d~aR~vy~~ 85 (161)
T 4h7y_A 9 MANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAE---LKAIQEPDDARDYFQM 85 (161)
T ss_dssp -CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHH---HHHHHCGGGCHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHH---HHHhcCHHHHHHHHHH
Confidence 455665666666668888988 888999999999888642 333332 2455899999999999
Q ss_pred chhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026637 82 CSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 125 (235)
Q Consensus 82 a~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~ 125 (235)
+... +..| ..+|-..|-|.+..| +.++|..++-++|.-
T Consensus 86 a~~~---hKkF--AKiwi~~AqFEiRqg-nl~kARkILg~AiG~ 123 (161)
T 4h7y_A 86 ARAN---CKKF--AFVHISFAQFELSQG-NVKKSKQLLQKAVER 123 (161)
T ss_dssp HHHH---CTTB--HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHT
T ss_pred HHHH---hHHH--HHHHHHHHHHHHHcc-cHHHHHHHHHHHhcc
Confidence 9887 3557 677777899999998 899999999999986
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=85.43 E-value=10 Score=29.89 Aligned_cols=69 Identities=9% Similarity=-0.088 Sum_probs=55.9
Q ss_pred CCCHHHHHHHHHHHHHcCCHH---HHHHHHHHchhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchhh
Q 026637 53 KHDCWSQHALCHVLQHDCCFK---EAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE 126 (235)
Q Consensus 53 P~dawA~halahvl~~~Gr~~---egi~~l~~a~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~~ 126 (235)
+-++.+.++.|+++......+ +||..++.-.+..|.. ---+.+ .+|+.++..| +|++|++..+..+..+
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~--~RdcLY--yLAvg~ykl~-~Y~~Ar~y~d~lL~~e 107 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESR--RRECLY--YLTIGCYKLG-EYSMAKRYVDTLFEHE 107 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCST--HHHHHH--HHHHHHHTTT-CHHHHHHHHHHHHHTC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccc--hhHHHH--HHHHHHHHhh-hHHHHHHHHHHHHhcC
Confidence 678899999999999988766 6999999988865532 112233 5999999998 9999999999988873
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=84.60 E-value=28 Score=35.54 Aligned_cols=190 Identities=11% Similarity=0.029 Sum_probs=113.0
Q ss_pred hcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHh-hCCC--------------------C--HHHHHHHHHHHHHcC
Q 026637 14 VLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLK-INKH--------------------D--CWSQHALCHVLQHDC 70 (235)
Q Consensus 14 al~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~-L~P~--------------------d--awA~halahvl~~~G 70 (235)
.++..|.++..-.++|-++..+|++++|...+++|-. +.++ + +.=+.-+.-.++..|
T Consensus 834 l~~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~ 913 (1139)
T 4fhn_B 834 LIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEES 913 (1139)
T ss_dssp HHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTS
T ss_pred HhhhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcC
Confidence 3455677787888999999999999999999998832 1111 1 112334566888999
Q ss_pred CHHHHHHHHHHchhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHH----HhhchhhhcCCCCCchHhHh--HHHHH
Q 026637 71 CFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIY----DNHIWKELEKPDAVHPEVYL--NALGL 144 (235)
Q Consensus 71 r~~egi~~l~~a~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~y----d~~i~~~~~~~~~~~~~~~~--da~sL 144 (235)
.++.++.|...++..-+..+.-+....|--+=.++++.| +||+|-... |..+...+-+ .....++ +....
T Consensus 914 ~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~-~ye~Ay~aL~~~pd~~~r~~cLr---~LV~~lce~~~~~~ 989 (1139)
T 4fhn_B 914 AYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG-KFDAAHVALMVLSTTPLKKSCLL---DFVNQLTKQGKINQ 989 (1139)
T ss_dssp CCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHC-CSGGGGHHHHHHHHSSSCHHHHH---HHHHHHHHHCCHHH
T ss_pred CHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhC-CHHHHHHHHHhCCCHHHHHHHHH---HHHHHHHhCCChhh
Confidence 999999999888765443332222223322344567777 899886555 2222222100 0111122 34556
Q ss_pred HHHHHhcCcccccccchHHHHHHHHhhhcchhcchhhHHHHHHHhcCCCchHHHHHHHHHHHHhh
Q 026637 145 LLRVYVRGELDVFGNRLKVLADCVADQANWYLECHLDLLILWALANTGEVSKAEDLLKGLKSRHS 209 (235)
Q Consensus 145 L~Rl~l~G~~~~~g~rw~~la~~~~~~~~~~~~~F~d~H~~~al~~ag~~~~~~~ll~~~~~~~~ 209 (235)
|.++-+.|.-..|.+-....+..... ..+...+-++-|.+=..+.....++.-|-+.+.+...
T Consensus 990 L~~lpf~gl~~~Vd~IL~~kAr~~~~--~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe~~~RL~~ 1052 (1139)
T 4fhn_B 990 LLNYSMPTLRQDVDNLLERKAFQMIN--VESQPCWYNILFSWRYKHQNYRDAAAIIYEKLSRYIS 1052 (1139)
T ss_dssp HHHHTTTSCHHHHHHHHHHHHHHHHH--HCCSTHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred hhCCCCccHHHHHHHHHHHHHHhCCc--cccCCCHHHHhHhhhhccCChHHHHHHHHHHHHHhhh
Confidence 66666666532233322222222111 0111124588888888899999999999888887754
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=82.63 E-value=5.7 Score=37.47 Aligned_cols=45 Identities=20% Similarity=0.234 Sum_probs=29.1
Q ss_pred HHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc
Q 026637 33 LELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEEC 82 (235)
Q Consensus 33 ~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~~a 82 (235)
.+.|++++|.+.++ ..+++..+-.+|.....+|+++.|+..+.+.
T Consensus 663 l~~~~~~~A~~~~~-----~~~~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 663 LKVGQLTLARDLLT-----DESAEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHTCHHHHHHHHT-----TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhcCCHHHHHHHHH-----hhCcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 45677777776643 2355556666777777777777777666654
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 235 | ||||
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 0.003 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 35.8 bits (81), Expect = 0.003
Identities = 14/123 (11%), Positives = 35/123 (28%)
Query: 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHA 61
G + Q+ + +L+ + ++ + + +K N +
Sbjct: 13 GDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSN 72
Query: 62 LCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDN 121
L +V + +EA++ VA +EG Y+
Sbjct: 73 LGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNP 132
Query: 122 HIW 124
++
Sbjct: 133 DLY 135
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 235 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.34 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 99.33 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 99.31 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.29 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 99.28 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.28 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 99.27 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.27 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 99.26 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.23 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.22 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.21 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.21 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 99.19 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.18 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.1 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 99.09 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 99.0 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.96 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 98.95 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 98.8 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.75 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.75 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.73 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 98.72 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.72 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.71 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 98.69 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 98.66 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 98.59 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.58 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 98.58 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 98.55 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.54 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.51 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 98.51 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 98.5 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 98.49 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 98.49 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 98.44 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 98.37 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.35 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.32 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 98.32 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 98.26 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.2 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 98.12 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 98.09 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.82 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.72 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 96.6 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 96.57 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 95.9 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 95.65 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 95.36 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.34 E-value=1.3e-11 Score=103.73 Aligned_cols=117 Identities=14% Similarity=0.125 Sum_probs=55.0
Q ss_pred CChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 026637 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEE 81 (235)
Q Consensus 2 G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~~ 81 (235)
|+.+++....+++....|..+..+..+|.++...|++++|+..+++|++++|+++.++..+|.++..+|++++|+..++.
T Consensus 217 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 296 (388)
T d1w3ba_ 217 RIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNT 296 (388)
T ss_dssp TCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHhHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 44444444444444444444444444444444455555555555555555555554444555555555555555444444
Q ss_pred chhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhch
Q 026637 82 CSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIW 124 (235)
Q Consensus 82 a~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~ 124 (235)
+....|.. ...+..++.++...| ++++|++.|++.+.
T Consensus 297 ~~~~~~~~-----~~~~~~l~~~~~~~~-~~~~A~~~~~~al~ 333 (388)
T d1w3ba_ 297 ALRLCPTH-----ADSLNNLANIKREQG-NIEEAVRLYRKALE 333 (388)
T ss_dssp HHHHCTTC-----HHHHHHHHHHHHTTT-CHHHHHHHHHHHTT
T ss_pred hhccCCcc-----chhhhHHHHHHHHCC-CHHHHHHHHHHHHH
Confidence 44444332 122233444444444 44444444444443
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.33 E-value=3.3e-12 Score=95.84 Aligned_cols=90 Identities=13% Similarity=0.104 Sum_probs=66.8
Q ss_pred CCChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 026637 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME 80 (235)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~ 80 (235)
.|++++|.....+++..+|+++.++..+|.++...|++++|+..+.+++.++|+++.+++.+|.++...|++++|+..++
T Consensus 16 ~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~ 95 (117)
T d1elwa_ 16 VGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYE 95 (117)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccCHHHHHHHHH
Confidence 36777777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HchhhhccCC
Q 026637 81 ECSSTWSSCS 90 (235)
Q Consensus 81 ~a~~~w~~~~ 90 (235)
++....|+.+
T Consensus 96 ~a~~~~p~~~ 105 (117)
T d1elwa_ 96 EGLKHEANNP 105 (117)
T ss_dssp HHHTTCTTCH
T ss_pred HHHHhCCCCH
Confidence 7777766643
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.31 E-value=9.8e-12 Score=97.13 Aligned_cols=113 Identities=10% Similarity=0.050 Sum_probs=96.9
Q ss_pred CCChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 026637 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME 80 (235)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~ 80 (235)
.|++++|+...++++..+|+++.++.++|.++...|++++|+..+++||+++|+++.+++.+|.++...|++++|+..++
T Consensus 23 ~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g~~~eA~~~~~ 102 (159)
T d1a17a_ 23 AKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYE 102 (159)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HchhhhccCCcchhHHHHHHHHHH--HHhCCCCHHHHHHHH
Q 026637 81 ECSSTWSSCSSFMYTHNWWHVALC--YLEGHSPMRKVLEIY 119 (235)
Q Consensus 81 ~a~~~w~~~~~~l~~H~~WHlAL~--~le~G~~~deAl~~y 119 (235)
++....|+.+. ..++++.+ .+..+ .+++++...
T Consensus 103 ~a~~~~p~~~~-----~~~~l~~~~~~~~~~-~~~~a~~~~ 137 (159)
T d1a17a_ 103 TVVKVKPHDKD-----AKMKYQECNKIVKQK-AFERAIAGD 137 (159)
T ss_dssp HHHHHSTTCHH-----HHHHHHHHHHHHHHH-HHHHHHHHH
T ss_pred HHHHcCCCCHH-----HHHHHHHHHHHHHHH-HHHHHHhCc
Confidence 99999887542 22233333 34444 566666553
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.29 E-value=6.7e-11 Score=102.60 Aligned_cols=118 Identities=11% Similarity=0.107 Sum_probs=111.6
Q ss_pred CChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhC-CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 026637 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELG-QMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME 80 (235)
Q Consensus 2 G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g-~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~ 80 (235)
++.++|+...++|+..+|++..++...|.++...| ++++|....+++++++|++.++++.+|.++...|++++|+.+++
T Consensus 57 e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~~~l~~~~eAl~~~~ 136 (315)
T d2h6fa1 57 ERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIA 136 (315)
T ss_dssp CCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHH
T ss_pred CchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHhhccHHHHHHHHh
Confidence 67899999999999999999999999999999987 59999999999999999999999999999999999999999999
Q ss_pred HchhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026637 81 ECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 125 (235)
Q Consensus 81 ~a~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~ 125 (235)
++....|.. .|.|-|++.++...| ++++|+..|++.|..
T Consensus 137 kal~~dp~n-----~~a~~~~~~~~~~~~-~~~~Al~~~~~al~~ 175 (315)
T d2h6fa1 137 DILNQDAKN-----YHAWQHRQWVIQEFK-LWDNELQYVDQLLKE 175 (315)
T ss_dssp HHHHHCTTC-----HHHHHHHHHHHHHHT-CCTTHHHHHHHHHHH
T ss_pred hhhhhhhcc-----hHHHHHHHHHHHHHH-hhHHHHHHHHHHHHH
Confidence 999999883 477888999999998 999999999999987
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.28 E-value=1.2e-11 Score=97.92 Aligned_cols=90 Identities=11% Similarity=0.067 Sum_probs=80.4
Q ss_pred CCChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 026637 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME 80 (235)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~ 80 (235)
.|++++|+...++++..+|.++.++.++|.++...|+|++|+..+++|+.++|+++.++..+|.++..+|++++|+..++
T Consensus 17 ~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~~~~l~~~~~A~~~~~ 96 (201)
T d2c2la1 17 GRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQ 96 (201)
T ss_dssp TTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 48889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HchhhhccCC
Q 026637 81 ECSSTWSSCS 90 (235)
Q Consensus 81 ~a~~~w~~~~ 90 (235)
++....|..+
T Consensus 97 ~al~l~p~~~ 106 (201)
T d2c2la1 97 RAYSLAKEQR 106 (201)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHhCcccH
Confidence 9888777644
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.28 E-value=1.3e-11 Score=100.95 Aligned_cols=116 Identities=11% Similarity=0.036 Sum_probs=98.5
Q ss_pred hhhHHHHHHhhcCC----CCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 026637 4 PDLCFDIIHQVLPY----NQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFM 79 (235)
Q Consensus 4 ~~~al~~~~ral~~----~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l 79 (235)
.+.++...++++.. .|..+.++..+|.++...|++++|++.+++||+++|+++.++..+|.++..+|++++|+..+
T Consensus 15 ~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~ 94 (259)
T d1xnfa_ 15 QEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAF 94 (259)
T ss_dssp HHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhhh
Confidence 45566667777764 23456788899999999999999999999999999999999999999999999999999999
Q ss_pred HHchhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026637 80 EECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 125 (235)
Q Consensus 80 ~~a~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~ 125 (235)
+++....|..+ . .+.++|.++...| ++++|+..|++.+..
T Consensus 95 ~~al~~~p~~~---~--a~~~lg~~~~~~g-~~~~A~~~~~~al~~ 134 (259)
T d1xnfa_ 95 DSVLELDPTYN---Y--AHLNRGIALYYGG-RDKLAQDDLLAFYQD 134 (259)
T ss_dssp HHHHHHCTTCT---H--HHHHHHHHHHHTT-CHHHHHHHHHHHHHH
T ss_pred hHHHHHHhhhh---h--hHHHHHHHHHHHh-hHHHHHHHHHHHHhh
Confidence 99999988753 2 3446999999998 899999999998876
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.27 E-value=1.4e-10 Score=94.00 Aligned_cols=121 Identities=13% Similarity=0.062 Sum_probs=102.8
Q ss_pred CCChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 026637 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME 80 (235)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~ 80 (235)
.|++++|+....++. |.++.++..+|.++...|++++|++.+.+|++++|+++.++..+|.++..+|++++|+..++
T Consensus 18 ~~d~~~Al~~~~~i~---~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g~~~~A~~~~~ 94 (192)
T d1hh8a_ 18 KKDWKGALDAFSAVQ---DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLK 94 (192)
T ss_dssp TTCHHHHHHHHHTSS---SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHhhccHHHHHHHHH
Confidence 488999999999864 44677888999999999999999999999999999999999999999999999999999999
Q ss_pred HchhhhccCCcc-----------hhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026637 81 ECSSTWSSCSSF-----------MYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 125 (235)
Q Consensus 81 ~a~~~w~~~~~~-----------l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~ 125 (235)
++...-+..+.. ...-.+..+|+++...| ++++|++.|..++..
T Consensus 95 kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~-~~~~A~~~l~~A~~~ 149 (192)
T d1hh8a_ 95 EALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKE-EWKKAEEQLALATSM 149 (192)
T ss_dssp HHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHTT
T ss_pred HHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCC-CHHHHHHHHHHHHhc
Confidence 997654432210 01234557999999998 999999999998875
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.27 E-value=6.3e-11 Score=99.32 Aligned_cols=118 Identities=12% Similarity=0.065 Sum_probs=71.8
Q ss_pred CChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 026637 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEE 81 (235)
Q Consensus 2 G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~~ 81 (235)
|+.+.+....++++..+|+++.++..+|..+...|++++|++..++++.++|.++..+..+|.++..+|++++|+..+++
T Consensus 183 ~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 262 (388)
T d1w3ba_ 183 GEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRR 262 (388)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHhCcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 45556666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred chhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026637 82 CSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 125 (235)
Q Consensus 82 a~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~ 125 (235)
+....|..+ ..+..+|.++...| ++++|++.|+..+..
T Consensus 263 al~~~p~~~-----~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~ 300 (388)
T d1w3ba_ 263 AIELQPHFP-----DAYCNLANALKEKG-SVAEAEDCYNTALRL 300 (388)
T ss_dssp HHHTCSSCH-----HHHHHHHHHHHHHS-CHHHHHHHHHHHHHH
T ss_pred HHHhCCCCH-----HHHHHHHHHHHHcC-CHHHHHHHHHhhhcc
Confidence 666555432 23334566666665 666666666555544
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.26 E-value=1e-10 Score=87.47 Aligned_cols=94 Identities=10% Similarity=0.052 Sum_probs=86.5
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhhccCCcchhHHHHHHHHHHH
Q 026637 26 GILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCY 105 (235)
Q Consensus 26 g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~~a~~~w~~~~~~l~~H~~WHlAL~~ 105 (235)
-..|..+...|+|++|+..+.++|.++|+++.++..+|.++..+|++++|+..++++....|..+ ..|..+|.++
T Consensus 7 ~~~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~-----~~~~~~g~~~ 81 (117)
T d1elwa_ 7 KEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWG-----KGYSRKAAAL 81 (117)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH-----HHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchh-----hHHHHHHHHH
Confidence 45688899999999999999999999999999999999999999999999999999999988753 3455699999
Q ss_pred HhCCCCHHHHHHHHHhhchh
Q 026637 106 LEGHSPMRKVLEIYDNHIWK 125 (235)
Q Consensus 106 le~G~~~deAl~~yd~~i~~ 125 (235)
..+| ++++|+..|++.+..
T Consensus 82 ~~~~-~~~~A~~~~~~a~~~ 100 (117)
T d1elwa_ 82 EFLN-RFEEAKRTYEEGLKH 100 (117)
T ss_dssp HHTT-CHHHHHHHHHHHHTT
T ss_pred HHcc-CHHHHHHHHHHHHHh
Confidence 9998 999999999999976
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=99.23 E-value=3e-11 Score=89.91 Aligned_cols=92 Identities=11% Similarity=-0.047 Sum_probs=83.9
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhhccCCcchhHHHHHHHHHHH
Q 026637 26 GILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCY 105 (235)
Q Consensus 26 g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~~a~~~w~~~~~~l~~H~~WHlAL~~ 105 (235)
...|..+..+|++++|+...++++.++|++++++..+|.++...|++++|+..++++....|..+ -.|..+|.++
T Consensus 20 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~-----~a~~~la~~y 94 (112)
T d1hxia_ 20 MEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDI-----AVHAALAVSH 94 (112)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-----HHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccc-----cchHHHHHHH
Confidence 45688899999999999999999999999999999999999999999999999999999998853 3455699999
Q ss_pred HhCCCCHHHHHHHHHhhc
Q 026637 106 LEGHSPMRKVLEIYDNHI 123 (235)
Q Consensus 106 le~G~~~deAl~~yd~~i 123 (235)
...| ++++|++.+++.|
T Consensus 95 ~~~g-~~~~A~~~l~~~l 111 (112)
T d1hxia_ 95 TNEH-NANAALASLRAWL 111 (112)
T ss_dssp HHHH-HHHHHHHHHHHHH
T ss_pred HHCC-CHHHHHHHHHHHh
Confidence 9998 9999999998764
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.22 E-value=3.7e-11 Score=101.34 Aligned_cols=118 Identities=10% Similarity=0.046 Sum_probs=104.9
Q ss_pred ChhhHHHHHHhhcCCCCC--ChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 026637 3 RPDLCFDIIHQVLPYNQQ--EDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME 80 (235)
Q Consensus 3 ~~~~al~~~~ral~~~p~--~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~ 80 (235)
...++.....+++..+|+ ++.++..+|..+...|++++|+...++++.++|+++.++..+|.++..+|++++|+..++
T Consensus 151 ~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 230 (323)
T d1fcha_ 151 LFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYR 230 (323)
T ss_dssp HHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccccccccchhhhhhcccccccchhHHHHHH
Confidence 345677888889888876 567888899999999999999999999999999999999999999999999999999999
Q ss_pred HchhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchhh
Q 026637 81 ECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE 126 (235)
Q Consensus 81 ~a~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~~ 126 (235)
++....|..+ ..+..+|.++...| ++++|+..|+++|...
T Consensus 231 ~al~~~p~~~-----~a~~~lg~~~~~~g-~~~~A~~~~~~al~l~ 270 (323)
T d1fcha_ 231 RALELQPGYI-----RSRYNLGISCINLG-AHREAVEHFLEALNMQ 270 (323)
T ss_dssp HHHHHCTTCH-----HHHHHHHHHHHHHT-CHHHHHHHHHHHHHHH
T ss_pred HHHHHhhccH-----HHHHHHHHHHHHCC-CHHHHHHHHHHHHHhC
Confidence 9999887643 34456999999998 9999999999999863
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.21 E-value=3.8e-10 Score=94.94 Aligned_cols=124 Identities=9% Similarity=0.040 Sum_probs=107.8
Q ss_pred CCChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 026637 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME 80 (235)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~ 80 (235)
.|+.++|+...++++..+|+++.++..+|.++...|++++|...+.+|++++|+++.++..+|.++...|++++|+..++
T Consensus 32 ~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~ 111 (323)
T d1fcha_ 32 EGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILR 111 (323)
T ss_dssp TTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccccccccccccccccccccccccccccchh
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HchhhhccC----------------------------------------------CcchhHHHHHHHHHHHHhCCCCHHH
Q 026637 81 ECSSTWSSC----------------------------------------------SSFMYTHNWWHVALCYLEGHSPMRK 114 (235)
Q Consensus 81 ~a~~~w~~~----------------------------------------------~~~l~~H~~WHlAL~~le~G~~~de 114 (235)
++....|.. |.......+..+|.++...| ++++
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~-~~~~ 190 (323)
T d1fcha_ 112 DWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSG-EYDK 190 (323)
T ss_dssp HHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTT-CHHH
T ss_pred hHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHH-HHhh
Confidence 875544331 11111234556888899998 9999
Q ss_pred HHHHHHhhchh
Q 026637 115 VLEIYDNHIWK 125 (235)
Q Consensus 115 Al~~yd~~i~~ 125 (235)
|+..|++.+..
T Consensus 191 A~~~~~~al~~ 201 (323)
T d1fcha_ 191 AVDCFTAALSV 201 (323)
T ss_dssp HHHHHHHHHHH
T ss_pred hhccccccccc
Confidence 99999998876
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.21 E-value=6.5e-11 Score=96.70 Aligned_cols=115 Identities=15% Similarity=0.074 Sum_probs=99.3
Q ss_pred CCChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 026637 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME 80 (235)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~ 80 (235)
.|+.++|+...++++..+|+++.++..+|.++.+.|++++|++.+++++.++|+++.++..+|.++..+|++++|+..++
T Consensus 50 ~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 129 (259)
T d1xnfa_ 50 LGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLL 129 (259)
T ss_dssp TTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HchhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHh
Q 026637 81 ECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDN 121 (235)
Q Consensus 81 ~a~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~ 121 (235)
++....|..+ ..+.+ +++.+...+ ..+....+...
T Consensus 130 ~al~~~p~~~---~~~~~--~~~~~~~~~-~~~~~~~~~~~ 164 (259)
T d1xnfa_ 130 AFYQDDPNDP---FRSLW--LYLAEQKLD-EKQAKEVLKQH 164 (259)
T ss_dssp HHHHHCTTCH---HHHHH--HHHHHHHHC-HHHHHHHHHHH
T ss_pred HHHhhccccH---HHHHH--HHHHHHHhh-hHHHHHHHHHH
Confidence 9999887742 23343 566666655 44555444444
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.19 E-value=1.6e-10 Score=91.14 Aligned_cols=97 Identities=7% Similarity=-0.078 Sum_probs=86.6
Q ss_pred hHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhhccCCcchhHHHHHHHH
Q 026637 23 FIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVA 102 (235)
Q Consensus 23 ~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~~a~~~w~~~~~~l~~H~~WHlA 102 (235)
.-+--.|-.+...|+|++|+..+++||+++|+++.++..+|.++...|++++|+..++++....|..+ .+ |-++|
T Consensus 5 ~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~---~a--~~~lg 79 (201)
T d2c2la1 5 QELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSV---KA--HFFLG 79 (201)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCH---HH--HHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcH---HH--HHHHH
Confidence 34556788899999999999999999999999999999999999999999999999999999987632 33 44699
Q ss_pred HHHHhCCCCHHHHHHHHHhhchh
Q 026637 103 LCYLEGHSPMRKVLEIYDNHIWK 125 (235)
Q Consensus 103 L~~le~G~~~deAl~~yd~~i~~ 125 (235)
.+++.+| ++++|+..|.+.+.-
T Consensus 80 ~~~~~l~-~~~~A~~~~~~al~l 101 (201)
T d2c2la1 80 QCQLEME-SYDEAIANLQRAYSL 101 (201)
T ss_dssp HHHHHTT-CHHHHHHHHHHHHHH
T ss_pred HHHHHCC-CHHHHHHHHHHHHHh
Confidence 9999998 999999999988764
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=99.18 E-value=4.3e-11 Score=89.03 Aligned_cols=83 Identities=11% Similarity=-0.008 Sum_probs=80.4
Q ss_pred CCChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 026637 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME 80 (235)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~ 80 (235)
.|+.++|....++++..+|+++.++.++|.++...|++++|+...++|++++|+++.++..+|.++..+|++++|++.++
T Consensus 29 ~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g~~~~A~~~l~ 108 (112)
T d1hxia_ 29 LANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLR 108 (112)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHCCCHHHHHHHHH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred Hch
Q 026637 81 ECS 83 (235)
Q Consensus 81 ~a~ 83 (235)
++.
T Consensus 109 ~~l 111 (112)
T d1hxia_ 109 AWL 111 (112)
T ss_dssp HHH
T ss_pred HHh
Confidence 863
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.10 E-value=3.1e-09 Score=91.82 Aligned_cols=123 Identities=9% Similarity=0.071 Sum_probs=105.2
Q ss_pred cCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHchhhhccCCcch
Q 026637 15 LPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCC-FKEAVQFMEECSSTWSSCSSFM 93 (235)
Q Consensus 15 l~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr-~~egi~~l~~a~~~w~~~~~~l 93 (235)
+...|++..+++.++.++.+.+.+++|.+.+++||++||++..+++.+|.++...|+ .++++.+++++....|..
T Consensus 36 I~~~p~~~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~---- 111 (315)
T d2h6fa1 36 IIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKN---- 111 (315)
T ss_dssp ECCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTC----
T ss_pred cccCHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhh----
Confidence 345678889999999999999999999999999999999999999999999999886 899999999999999884
Q ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHhhchhhhcCCCCCchHhHhHHHHHHHHH
Q 026637 94 YTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNALGLLLRV 148 (235)
Q Consensus 94 ~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~~~~~~~~~~~~~~~da~sLL~Rl 148 (235)
...|.|++..+...| ++++|++.|++.|... +. ......+-..++.++
T Consensus 112 -~~a~~~~~~~~~~l~-~~~eAl~~~~kal~~d--p~---n~~a~~~~~~~~~~~ 159 (315)
T d2h6fa1 112 -YQVWHHRRVLVEWLR-DPSQELEFIADILNQD--AK---NYHAWQHRQWVIQEF 159 (315)
T ss_dssp -HHHHHHHHHHHHHHT-CCTTHHHHHHHHHHHC--TT---CHHHHHHHHHHHHHH
T ss_pred -hhHHHHHhHHHHhhc-cHHHHHHHHhhhhhhh--hc---chHHHHHHHHHHHHH
Confidence 467778999999998 9999999999999873 22 244455555555544
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.09 E-value=8e-10 Score=85.93 Aligned_cols=95 Identities=9% Similarity=0.064 Sum_probs=85.7
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhhccCCcchhHHHHHHHHHH
Q 026637 25 FGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALC 104 (235)
Q Consensus 25 ~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~~a~~~w~~~~~~l~~H~~WHlAL~ 104 (235)
+-..|-.+...|+|++|+..+++|+.++|+++.++..+|.++...|++++|+..++++....|... ..+..+|.+
T Consensus 13 l~~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~-----~a~~~~g~~ 87 (159)
T d1a17a_ 13 LKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYI-----KGYYRRAAS 87 (159)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-----HHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccch-----HHHHHHHHH
Confidence 445677788999999999999999999999999999999999999999999999999999997742 334459999
Q ss_pred HHhCCCCHHHHHHHHHhhchh
Q 026637 105 YLEGHSPMRKVLEIYDNHIWK 125 (235)
Q Consensus 105 ~le~G~~~deAl~~yd~~i~~ 125 (235)
+...| ++++|+..|++.+..
T Consensus 88 ~~~~g-~~~eA~~~~~~a~~~ 107 (159)
T d1a17a_ 88 NMALG-KFRAALRDYETVVKV 107 (159)
T ss_dssp HHHTT-CHHHHHHHHHHHHHH
T ss_pred HHHcC-CHHHHHHHHHHHHHc
Confidence 99998 999999999999887
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.00 E-value=2.6e-09 Score=80.74 Aligned_cols=100 Identities=7% Similarity=0.066 Sum_probs=85.5
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhhccCCcch--hHHHHHHHH
Q 026637 25 FGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSFM--YTHNWWHVA 102 (235)
Q Consensus 25 ~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~~a~~~w~~~~~~l--~~H~~WHlA 102 (235)
+-.+|-.+...|+|++|+..+++||.++|+++.++.++|.++.++|++++|+..+++++...|..+... .+..+-.++
T Consensus 7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg 86 (128)
T d1elra_ 7 EKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIG 86 (128)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHH
Confidence 445677889999999999999999999999999999999999999999999999999988877754321 112334588
Q ss_pred HHHHhCCCCHHHHHHHHHhhchh
Q 026637 103 LCYLEGHSPMRKVLEIYDNHIWK 125 (235)
Q Consensus 103 L~~le~G~~~deAl~~yd~~i~~ 125 (235)
..+...+ ++++|+..|.+.+..
T Consensus 87 ~~~~~~~-~~~~A~~~~~kal~~ 108 (128)
T d1elra_ 87 NSYFKEE-KYKDAIHFYNKSLAE 108 (128)
T ss_dssp HHHHHTT-CHHHHHHHHHHHHHH
T ss_pred HHHHHhC-CHHHHHHHHHHHHhc
Confidence 8888998 999999999999876
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.96 E-value=1.2e-09 Score=83.09 Aligned_cols=94 Identities=11% Similarity=0.044 Sum_probs=79.4
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH---HHHHHHHHHchhhhccCCcchhHHHHHHHHHH
Q 026637 28 LAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCF---KEAVQFMEECSSTWSSCSSFMYTHNWWHVALC 104 (235)
Q Consensus 28 ~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~---~egi~~l~~a~~~w~~~~~~l~~H~~WHlAL~ 104 (235)
++-.+...+++++|++.+++||+++|+++.++.++|.++...++. ++|+..+++.....|. |. ....+..+|.+
T Consensus 5 l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~-~~--~~~~~~~Lg~~ 81 (122)
T d1nzna_ 5 VLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSK-EE--QRDYVFYLAVG 81 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCH-HH--HHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCC-ch--HHHHHHHHHHH
Confidence 444677889999999999999999999999999999999875554 5699999998876654 21 22356679999
Q ss_pred HHhCCCCHHHHHHHHHhhchh
Q 026637 105 YLEGHSPMRKVLEIYDNHIWK 125 (235)
Q Consensus 105 ~le~G~~~deAl~~yd~~i~~ 125 (235)
|...| ++++|++.|++.+..
T Consensus 82 y~~~g-~~~~A~~~~~~aL~~ 101 (122)
T d1nzna_ 82 NYRLK-EYEKALKYVRGLLQT 101 (122)
T ss_dssp HHHTT-CHHHHHHHHHHHHHH
T ss_pred HHHHh-hhHHHHHHHHHHHHh
Confidence 99998 999999999999987
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.95 E-value=5.7e-10 Score=86.73 Aligned_cols=87 Identities=14% Similarity=0.028 Sum_probs=79.8
Q ss_pred CChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHh----------CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q 026637 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLEL----------GQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCC 71 (235)
Q Consensus 2 G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~----------g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr 71 (235)
|++++|+...++++..+|+++.++..+|.++.+. +.+++|++.+++|++++|+++.++.++|.++..+|+
T Consensus 11 ~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~~~g~ 90 (145)
T d1zu2a1 11 LLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAF 90 (145)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHHHHHccc
Confidence 5688999999999999999999999999998754 456889999999999999999999999999998875
Q ss_pred -----------HHHHHHHHHHchhhhcc
Q 026637 72 -----------FKEAVQFMEECSSTWSS 88 (235)
Q Consensus 72 -----------~~egi~~l~~a~~~w~~ 88 (235)
+++|+.+++++....|+
T Consensus 91 ~~~~~~~~~~~~~~A~~~~~kal~l~P~ 118 (145)
T d1zu2a1 91 LTPDETEAKHNFDLATQFFQQAVDEQPD 118 (145)
T ss_dssp HCCCHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred chhhHHHHHHhHHHhhhhhhcccccCCC
Confidence 68999999999999987
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=98.80 E-value=3e-07 Score=75.04 Aligned_cols=125 Identities=12% Similarity=-0.009 Sum_probs=103.7
Q ss_pred CCChhhHHHHHHhhcCCCCCCh-----hHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHc
Q 026637 1 MGRPDLCFDIIHQVLPYNQQED-----FIFGILAFSLLELGQMSDAEEAAKKGLKINKHD------CWSQHALCHVLQHD 69 (235)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~-----~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~d------awA~halahvl~~~ 69 (235)
.|++++|+...++++...|+++ .++.++|.++...|++++|+...++++++.|.. .++...++.++...
T Consensus 25 ~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (366)
T d1hz4a_ 25 DGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQ 104 (366)
T ss_dssp TTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHH
Confidence 4899999999999999988764 478889999999999999999999999987655 57889999999999
Q ss_pred CCHHHHHHHHHHchhhhccCCc---chhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchhh
Q 026637 70 CCFKEAVQFMEECSSTWSSCSS---FMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE 126 (235)
Q Consensus 70 Gr~~egi~~l~~a~~~w~~~~~---~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~~ 126 (235)
|++.+++..+.++....+..+. .......-.+|..+...| +++++...|++.+...
T Consensus 105 ~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~-~~~~a~~~~~~~~~~~ 163 (366)
T d1hz4a_ 105 GFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWA-RLDEAEASARSGIEVL 163 (366)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhc-chhhhHHHHHHHHHHh
Confidence 9999999999998776544221 112223445888899998 9999999999888764
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.75 E-value=2.1e-08 Score=79.20 Aligned_cols=89 Identities=15% Similarity=0.095 Sum_probs=80.2
Q ss_pred CChhhHHHHHHhhcCCCCCCh---------------hHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 026637 2 GRPDLCFDIIHQVLPYNQQED---------------FIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVL 66 (235)
Q Consensus 2 G~~~~al~~~~ral~~~p~~~---------------~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl 66 (235)
|++++|+...++++...|... ..+..+|.++...|+|++|+..+++||.++|+++-++..+|-++
T Consensus 27 ~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~ 106 (170)
T d1p5qa1 27 GKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAH 106 (170)
T ss_dssp TCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhccccchhhhHHHHHHH
Confidence 789999999999987655321 35667899999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHchhhhccCC
Q 026637 67 QHDCCFKEAVQFMEECSSTWSSCS 90 (235)
Q Consensus 67 ~~~Gr~~egi~~l~~a~~~w~~~~ 90 (235)
...|++++|+..++++....|+.+
T Consensus 107 ~~~g~~~~A~~~~~~al~l~P~n~ 130 (170)
T d1p5qa1 107 LAVNDFELARADFQKVLQLYPNNK 130 (170)
T ss_dssp HHTTCHHHHHHHHHHHHHHCSSCH
T ss_pred HHhhhHHHHHHHHHHHHHhCCCCH
Confidence 999999999999999999998854
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.75 E-value=1.7e-08 Score=76.13 Aligned_cols=88 Identities=10% Similarity=0.138 Sum_probs=79.8
Q ss_pred CCChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCH-------HHHHHHHHHHHHcCCHH
Q 026637 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDC-------WSQHALCHVLQHDCCFK 73 (235)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~da-------wA~halahvl~~~Gr~~ 73 (235)
.|++++|+...++++..+|+++.++.++|-++..+|+|++|+..+++|++++|+++ .++..+|.++...++++
T Consensus 17 ~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg~~~~~~~~~~ 96 (128)
T d1elra_ 17 KKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYK 96 (128)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred cCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHHhCCHH
Confidence 48999999999999999999999999999999999999999999999999999986 46667778889999999
Q ss_pred HHHHHHHHchhhhcc
Q 026637 74 EAVQFMEECSSTWSS 88 (235)
Q Consensus 74 egi~~l~~a~~~w~~ 88 (235)
+|+.+++++....+.
T Consensus 97 ~A~~~~~kal~~~~~ 111 (128)
T d1elra_ 97 DAIHFYNKSLAEHRT 111 (128)
T ss_dssp HHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHhcCCC
Confidence 999999888776544
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.73 E-value=6.1e-08 Score=77.99 Aligned_cols=88 Identities=9% Similarity=0.023 Sum_probs=82.7
Q ss_pred CCChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCC----------------HHHHHHHHH
Q 026637 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHD----------------CWSQHALCH 64 (235)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~d----------------awA~halah 64 (235)
+|++++|+...++|+..+|+++.++..+|.++.+.|+|++|.+.+++|+...|.+ +.+++++|.
T Consensus 49 ~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~ 128 (192)
T d1hh8a_ 49 LKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAF 128 (192)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHH
T ss_pred cCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHhhccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHH
Confidence 6899999999999999999999999999999999999999999999999987765 356889999
Q ss_pred HHHHcCCHHHHHHHHHHchhhhcc
Q 026637 65 VLQHDCCFKEAVQFMEECSSTWSS 88 (235)
Q Consensus 65 vl~~~Gr~~egi~~l~~a~~~w~~ 88 (235)
++...|++++|+..++.+...+|.
T Consensus 129 ~~~~~~~~~~A~~~l~~A~~~~~~ 152 (192)
T d1hh8a_ 129 MYAKKEEWKKAEEQLALATSMKSE 152 (192)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred HHHHCCCHHHHHHHHHHHHhcCCC
Confidence 999999999999999999999877
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.72 E-value=3e-08 Score=77.62 Aligned_cols=89 Identities=10% Similarity=0.031 Sum_probs=79.3
Q ss_pred CCChhhHHHHHHhhcCC----------------CCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 026637 1 MGRPDLCFDIIHQVLPY----------------NQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCH 64 (235)
Q Consensus 1 ~G~~~~al~~~~ral~~----------------~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halah 64 (235)
.|++.+|+....+++.. .|.....+..+|.++.+.|+|++|+..+.+||+++|+++.++..+|.
T Consensus 40 ~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~ 119 (169)
T d1ihga1 40 SQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQ 119 (169)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHH
Confidence 36778888888777643 45566778889999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHchhhhccC
Q 026637 65 VLQHDCCFKEAVQFMEECSSTWSSC 89 (235)
Q Consensus 65 vl~~~Gr~~egi~~l~~a~~~w~~~ 89 (235)
++...|++++|+..++++....|..
T Consensus 120 ~~~~l~~~~~A~~~~~~al~l~p~n 144 (169)
T d1ihga1 120 GWQGLKEYDQALADLKKAQEIAPED 144 (169)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHccCHHHHHHHHHHHHHhCCCC
Confidence 9999999999999999999998874
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.72 E-value=4.9e-09 Score=79.51 Aligned_cols=88 Identities=7% Similarity=-0.143 Sum_probs=79.5
Q ss_pred CChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhC---CHHHHHHHHHHHHhhCCCCH--HHHHHHHHHHHHcCCHHHHH
Q 026637 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELG---QMSDAEEAAKKGLKINKHDC--WSQHALCHVLQHDCCFKEAV 76 (235)
Q Consensus 2 G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g---~~~~Ae~~arrAL~L~P~da--wA~halahvl~~~Gr~~egi 76 (235)
++.+++....++++..+|+++.++..+|.+|...+ ++.+|+...+++++.+|++. .++..+|.++...|++++|+
T Consensus 13 ~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~~~g~~~~A~ 92 (122)
T d1nzna_ 13 EDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKAL 92 (122)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHhhhHHHH
Confidence 46788999999999999999999999999998754 55679999999999998774 58999999999999999999
Q ss_pred HHHHHchhhhccC
Q 026637 77 QFMEECSSTWSSC 89 (235)
Q Consensus 77 ~~l~~a~~~w~~~ 89 (235)
..++++....|+.
T Consensus 93 ~~~~~aL~~~P~~ 105 (122)
T d1nzna_ 93 KYVRGLLQTEPQN 105 (122)
T ss_dssp HHHHHHHHHCTTC
T ss_pred HHHHHHHHhCcCC
Confidence 9999999999874
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.71 E-value=4.8e-08 Score=75.72 Aligned_cols=88 Identities=16% Similarity=-0.003 Sum_probs=79.0
Q ss_pred CChhhHHHHHHhhcCCCCCCh----------------hHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 026637 2 GRPDLCFDIIHQVLPYNQQED----------------FIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHV 65 (235)
Q Consensus 2 G~~~~al~~~~ral~~~p~~~----------------~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahv 65 (235)
|++.+|+...++++...|... ..+.++|.++...|++++|+..+.+||+++|+++-++..+|.+
T Consensus 31 ~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~ 110 (153)
T d2fbna1 31 NEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVA 110 (153)
T ss_dssp TCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhccccccchhhhhhHHhHHH
Confidence 788999999999887544211 3567899999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHchhhhccC
Q 026637 66 LQHDCCFKEAVQFMEECSSTWSSC 89 (235)
Q Consensus 66 l~~~Gr~~egi~~l~~a~~~w~~~ 89 (235)
+...|++++|+..++++....|+.
T Consensus 111 ~~~lg~~~~A~~~~~~al~l~P~n 134 (153)
T d2fbna1 111 NMYFGFLEEAKENLYKAASLNPNN 134 (153)
T ss_dssp HHHHTCHHHHHHHHHHHHHHSTTC
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCC
Confidence 999999999999999999999874
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=98.69 E-value=9.7e-09 Score=87.76 Aligned_cols=120 Identities=10% Similarity=0.005 Sum_probs=98.4
Q ss_pred CChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 026637 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEE 81 (235)
Q Consensus 2 G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~~ 81 (235)
|+.++++..+++++..+|+++.++..++..|...|++++|++..+++++++|++..+...++.++...++.+++......
T Consensus 10 G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~a~~~~~~ 89 (264)
T d1zbpa1 10 GQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDFAQGAAT 89 (264)
T ss_dssp TCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHTTSCCC
T ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccHHHHHHhhh
Confidence 89999999999999999999999999999999999999999999999999999999999999999998888876654333
Q ss_pred chhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchhh
Q 026637 82 CSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE 126 (235)
Q Consensus 82 a~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~~ 126 (235)
... ...|... -.....|..++..| ++++|.+++++.....
T Consensus 90 ~~~--~~~p~~~--~~~l~~a~~~~~~g-d~~~A~~~~~~a~e~~ 129 (264)
T d1zbpa1 90 AKV--LGENEEL--TKSLVSFNLSMVSQ-DYEQVSELALQIEELR 129 (264)
T ss_dssp EEC--CCSCHHH--HHHHHHHHHHHHHT-CHHHHHHHHHHHHHHC
T ss_pred hhc--ccCchHH--HHHHHHHHHHHhCC-CHHHHHHHHHHHHhcC
Confidence 221 1112111 12224677777777 9999999998877663
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=98.66 E-value=9.3e-08 Score=73.96 Aligned_cols=97 Identities=12% Similarity=0.107 Sum_probs=78.2
Q ss_pred HHHHHHhCCHHHHHHHHHHHHhhCCCCH------------HHHHHHHHHHHHcCCHHHHHHHHHHchhhhccCCcc-hhH
Q 026637 29 AFSLLELGQMSDAEEAAKKGLKINKHDC------------WSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSF-MYT 95 (235)
Q Consensus 29 Af~L~e~g~~~~Ae~~arrAL~L~P~da------------wA~halahvl~~~Gr~~egi~~l~~a~~~w~~~~~~-l~~ 95 (235)
|-.....|+|++|+..+++||+++|+.+ .++.++|.++..+|++++++..++++....+..... ...
T Consensus 16 g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~ 95 (156)
T d2hr2a1 16 AQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDE 95 (156)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccc
Confidence 5566778999999999999999999864 688999999999999999999999998765532110 001
Q ss_pred H-----HHHHHHHHHHhCCCCHHHHHHHHHhhchhh
Q 026637 96 H-----NWWHVALCYLEGHSPMRKVLEIYDNHIWKE 126 (235)
Q Consensus 96 H-----~~WHlAL~~le~G~~~deAl~~yd~~i~~~ 126 (235)
+ .+..+|.++..+| ++|+|++.|++.+...
T Consensus 96 ~~~~~~a~~~~g~~~~~lg-~~eeA~~~~~~Al~l~ 130 (156)
T d2hr2a1 96 GKLWISAVYSRALALDGLG-RGAEAMPEFKKVVEMI 130 (156)
T ss_dssp HHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHH
T ss_pred cchhHHHHhhhHHHHHHHH-HHHHHHHHHHHHHHhh
Confidence 1 2335899999998 9999999999988764
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=98.59 E-value=1.7e-07 Score=73.35 Aligned_cols=120 Identities=14% Similarity=0.059 Sum_probs=90.9
Q ss_pred CCChhhHHHHHHhhcCCCCC---------------ChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 026637 1 MGRPDLCFDIIHQVLPYNQQ---------------EDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHV 65 (235)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~---------------~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahv 65 (235)
.|++.+|+....+++...|. ...++.++|.++...|+|++|+..+.++|.++|+++.+++.+|.+
T Consensus 28 ~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~ 107 (168)
T d1kt1a1 28 GGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEA 107 (168)
T ss_dssp TTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHH
Confidence 37888999999888864322 124567799999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHchhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026637 66 LQHDCCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 125 (235)
Q Consensus 66 l~~~Gr~~egi~~l~~a~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~ 125 (235)
+...|++++|+..++++....|+.+ ..+. .++.+....+...+...++|.+....
T Consensus 108 ~~~l~~~~~A~~~~~~al~l~P~n~---~~~~--~l~~~~~~~~~~~e~~kk~~~~~f~~ 162 (168)
T d1kt1a1 108 QLLMNEFESAKGDFEKVLEVNPQNK---AARL--QIFMCQKKAKEHNERDRRTYANMFKK 162 (168)
T ss_dssp HHHTTCHHHHHHHHHHHHHSCTTCH---HHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCH---HHHH--HHHHHHHHHHhHHHHHHHHHHHHHhh
Confidence 9999999999999999999988743 2232 24444322221223455566554444
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.58 E-value=1e-06 Score=74.75 Aligned_cols=117 Identities=12% Similarity=0.087 Sum_probs=97.7
Q ss_pred hhhHHHHHHhhcCCCCCChhHHHHHHHHHHH----------hCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC--
Q 026637 4 PDLCFDIIHQVLPYNQQEDFIFGILAFSLLE----------LGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCC-- 71 (235)
Q Consensus 4 ~~~al~~~~ral~~~p~~~~~~g~~Af~L~e----------~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr-- 71 (235)
.+++++..++++..+|+++.++.+.+..+.. .|++++|....++++..+|+++.+...++.++...|+
T Consensus 45 ~~~al~~~~~~l~~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~~~~~~ 124 (334)
T d1dcea1 45 DESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPN 124 (334)
T ss_dssp SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCC
T ss_pred cHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHhhHHHHHhcccc
Confidence 4789999999999999998877666655444 4458899999999999999999999999999998876
Q ss_pred HHHHHHHHHHchhhhccCCcchhHHHHHH-HHHHHHhCCCCHHHHHHHHHhhchhh
Q 026637 72 FKEAVQFMEECSSTWSSCSSFMYTHNWWH-VALCYLEGHSPMRKVLEIYDNHIWKE 126 (235)
Q Consensus 72 ~~egi~~l~~a~~~w~~~~~~l~~H~~WH-lAL~~le~G~~~deAl~~yd~~i~~~ 126 (235)
.++++..++++....|.. .+.+++ .+.++...| .+++|+..|++.|...
T Consensus 125 ~~~a~~~~~~al~~~~~~-----~~~~~~~~~~~~~~~~-~~~~Al~~~~~~i~~~ 174 (334)
T d1dcea1 125 WARELELCARFLEADERN-----FHCWDYRRFVAAQAAV-APAEELAFTDSLITRN 174 (334)
T ss_dssp HHHHHHHHHHHHHHCTTC-----HHHHHHHHHHHHHTCC-CHHHHHHHHHTTTTTT
T ss_pred HHHHHHHHHHHHhhCchh-----hhhhhhHHHHHHHhcc-ccHHHHHHHHHHHHcC
Confidence 799999999999998763 355555 456776776 8999999999998873
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.58 E-value=3.2e-07 Score=83.66 Aligned_cols=192 Identities=10% Similarity=-0.047 Sum_probs=103.6
Q ss_pred hhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHch
Q 026637 4 PDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECS 83 (235)
Q Consensus 4 ~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~~a~ 83 (235)
...++..+.+++..+|++...+..+|..+...|++++|....++++.++|. .++..+|.++..+|++++|+.+++++.
T Consensus 102 Y~~ai~~l~~~~~l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~--~~~~~LG~l~~~~~~~~~A~~~y~~A~ 179 (497)
T d1ya0a1 102 YTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYICQ--HCLVHLGDIARYRNQTSQAESYYRHAA 179 (497)
T ss_dssp HHHHHHHHTC-------------------------------CCHHHHHHHH--HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCCHH--HHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 456677777888888999999999999999999999999999999998886 577889999999999999999999999
Q ss_pred hhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchhhhcCCCCCchHhHhHHHHHHHHHHhcCcccccccchHH
Q 026637 84 STWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNALGLLLRVYVRGELDVFGNRLKV 163 (235)
Q Consensus 84 ~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~~~~~~~~~~~~~~~da~sLL~Rl~l~G~~~~~g~rw~~ 163 (235)
..+|+.+ ..|+ ++|..+...| ++.+|+..|.++|.-. . +.+.. .+....++.-...... ...+-..
T Consensus 180 ~l~P~~~---~~~~--~Lg~~~~~~~-~~~~A~~~y~ral~~~---~--~~~~a-~~nL~~~~~~~~~~~~--~~~~~~~ 245 (497)
T d1ya0a1 180 QLVPSNG---QPYN--QLAILASSKG-DHLTTIFYYCRSIAVK---F--PFPAA-STNLQKALSKALESRD--EVKTKWG 245 (497)
T ss_dssp HHCTTBS---HHHH--HHHHHHHHTT-CHHHHHHHHHHHHSSS---B--CCHHH-HHHHHHHHHHHTTSCC--CCCSSCC
T ss_pred HHCCCch---HHHH--HHHHHHHHcC-CHHHHHHHHHHHHhCC---C--CCHHH-HHHHHHHHHHhhhhhh--hhccccc
Confidence 9999864 2344 6999999998 9999999999998763 1 23322 3334444443332221 1122111
Q ss_pred HHHHHHhhhcchhcchhhHHHHHHHhcCCCc---hHHHHHHHHHHHHhhcCchHHHHHHH
Q 026637 164 LADCVADQANWYLECHLDLLILWALANTGEV---SKAEDLLKGLKSRHSKMIKKKQELMQ 220 (235)
Q Consensus 164 la~~~~~~~~~~~~~F~d~H~~~al~~ag~~---~~~~~ll~~~~~~~~~~~~~~~~~~~ 220 (235)
.......|..+|..+-. +.+-. ...++++..++......+-...+..+
T Consensus 246 --------~~~~~~~f~~~~~~l~~-~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~ 296 (497)
T d1ya0a1 246 --------VSDFIKAFIKFHGHVYL-SKSLEKLSPLREKLEEQFKELLFQKAFNSQQLVH 296 (497)
T ss_dssp --------HHHHHHHHHHHHHHHHH-TCCGGGHHHHHHHHHHHHHHHHHTTCSCHHHHHH
T ss_pred --------cchHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHHhcCCCcHHHHHH
Confidence 12233468888866543 33321 22445566666665443333334433
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.55 E-value=5.1e-08 Score=75.32 Aligned_cols=89 Identities=13% Similarity=0.068 Sum_probs=73.3
Q ss_pred HHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc----------CCHHHHHHHHHHchhhhccCCcchhHHHHHHH
Q 026637 32 LLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHD----------CCFKEAVQFMEECSSTWSSCSSFMYTHNWWHV 101 (235)
Q Consensus 32 L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~----------Gr~~egi~~l~~a~~~w~~~~~~l~~H~~WHl 101 (235)
+...+.|++|+..+++|++++|+++.+++.+|.++... +++++|+..++++....|..+ . .++.+
T Consensus 7 ~~r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~---~--a~~~l 81 (145)
T d1zu2a1 7 FDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKD---E--AVWCI 81 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCH---H--HHHHH
T ss_pred HHHHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhh---H--HHhhH
Confidence 45667899999999999999999999999999999865 556899999999999998743 2 34458
Q ss_pred HHHHHhCC----------CCHHHHHHHHHhhchh
Q 026637 102 ALCYLEGH----------SPMRKVLEIYDNHIWK 125 (235)
Q Consensus 102 AL~~le~G----------~~~deAl~~yd~~i~~ 125 (235)
|.+|.+.| +.|++|++.|++.|..
T Consensus 82 G~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l 115 (145)
T d1zu2a1 82 GNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE 115 (145)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcccchhhHHHHHHhHHHhhhhhhccccc
Confidence 88887654 1368899999998877
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.54 E-value=1.9e-07 Score=78.69 Aligned_cols=125 Identities=14% Similarity=0.118 Sum_probs=102.7
Q ss_pred CCChhhHHHHHHhhcCCC------CCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHH
Q 026637 1 MGRPDLCFDIIHQVLPYN------QQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHD------CWSQHALCHVLQH 68 (235)
Q Consensus 1 ~G~~~~al~~~~ral~~~------p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~d------awA~halahvl~~ 68 (235)
.|++++|.....+++... ++....+...|.++.+.|++++|.+..++++.+.++. .-++..++.+++.
T Consensus 50 ~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~ 129 (290)
T d1qqea_ 50 RKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILEN 129 (290)
T ss_dssp TTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHHHHhHhh
Confidence 478899999999999863 2334678888999999999999999999999998888 6788899999987
Q ss_pred c-CCHHHHHHHHHHchhhhccCCcc-hhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchhh
Q 026637 69 D-CCFKEAVQFMEECSSTWSSCSSF-MYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWKE 126 (235)
Q Consensus 69 ~-Gr~~egi~~l~~a~~~w~~~~~~-l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~~ 126 (235)
. |++++|+.+++++....+..+.. ...-.+-.+|.++...| +|++|+.+|++.+...
T Consensus 130 ~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g-~y~~A~~~~~~~~~~~ 188 (290)
T d1qqea_ 130 DLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDG-QYIEASDIYSKLIKSS 188 (290)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcC-hHHHHHHHHHHHHHhC
Confidence 4 99999999999997765554322 12234556899999998 9999999999988764
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.51 E-value=6.6e-07 Score=70.22 Aligned_cols=97 Identities=11% Similarity=-0.047 Sum_probs=83.2
Q ss_pred hHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCH---------------HHHHHHHHHHHHcCCHHHHHHHHHHchhhhc
Q 026637 23 FIFGILAFSLLELGQMSDAEEAAKKGLKINKHDC---------------WSQHALCHVLQHDCCFKEAVQFMEECSSTWS 87 (235)
Q Consensus 23 ~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~da---------------wA~halahvl~~~Gr~~egi~~l~~a~~~w~ 87 (235)
..+...|-.+...|+|++|+..+++||.+.|.+. -++.++|.++..+|++++|+..+++++...|
T Consensus 14 ~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~~p 93 (170)
T d1p5qa1 14 TIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDS 93 (170)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhccc
Confidence 3445567788899999999999999999988764 4566799999999999999999999999998
Q ss_pred cCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026637 88 SCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 125 (235)
Q Consensus 88 ~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~ 125 (235)
..+ ..+..+|.++..+| ++++|+..|.+.+..
T Consensus 94 ~~~-----~a~~~~g~~~~~~g-~~~~A~~~~~~al~l 125 (170)
T d1p5qa1 94 NNE-----KGLSRRGEAHLAVN-DFELARADFQKVLQL 125 (170)
T ss_dssp TCH-----HHHHHHHHHHHHTT-CHHHHHHHHHHHHHH
T ss_pred cch-----hhhHHHHHHHHHhh-hHHHHHHHHHHHHHh
Confidence 742 33445999999998 999999999999886
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.51 E-value=1e-07 Score=68.35 Aligned_cols=69 Identities=13% Similarity=0.029 Sum_probs=58.7
Q ss_pred CCChhhHHHHHHhhcCCCCC-------ChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q 026637 1 MGRPDLCFDIIHQVLPYNQQ-------EDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHD 69 (235)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~-------~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~ 69 (235)
.|+..+|....++|+...|. .+.++..+|+++...|++++|.+..++||+++|+++.++.+++.+....
T Consensus 18 ~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~Nl~~~~~~l 93 (95)
T d1tjca_ 18 EADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNLKYFEYIM 93 (95)
T ss_dssp TTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHh
Confidence 48889999999999876443 3568899999999999999999999999999999999999998776543
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.50 E-value=4.4e-07 Score=72.64 Aligned_cols=106 Identities=9% Similarity=-0.079 Sum_probs=69.3
Q ss_pred CCChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 026637 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFME 80 (235)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~ 80 (235)
.||++++...+.+|+.+|+++...-... +. -+..+...+.|....++..++.++...|++++++..++
T Consensus 24 ~g~~e~A~~~~~~AL~l~rG~~l~~~~~-------~~-----w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al~~~~ 91 (179)
T d2ff4a2 24 AGRFEQASRHLSAALREWRGPVLDDLRD-------FQ-----FVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELE 91 (179)
T ss_dssp TTCHHHHHHHHHHHHTTCCSSTTGGGTT-------ST-----THHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhhCcccccccCcc-------hH-----HHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHH
Confidence 3899999999999999998765321100 01 11122333455555677777777777777777777777
Q ss_pred HchhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhch
Q 026637 81 ECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIW 124 (235)
Q Consensus 81 ~a~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~ 124 (235)
++....|.. -..|.++..++...| ++++|++.|++...
T Consensus 92 ~al~~~P~~-----e~~~~~l~~al~~~G-r~~eAl~~y~~~~~ 129 (179)
T d2ff4a2 92 ALTFEHPYR-----EPLWTQLITAYYLSD-RQSDALGAYRRVKT 129 (179)
T ss_dssp HHHHHSTTC-----HHHHHHHHHHHHTTT-CHHHHHHHHHHHHH
T ss_pred HHHHhCCcc-----HHHHHHHHHHHHHhc-CHHHHHHHHHHHHH
Confidence 777777653 345556777777776 77777777777644
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=98.49 E-value=1.6e-05 Score=64.42 Aligned_cols=105 Identities=11% Similarity=0.036 Sum_probs=86.0
Q ss_pred ChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCH-----HHHHHHHHHHHHcCCHHHHHHHHHHchhhhccCCcc-hh
Q 026637 21 EDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDC-----WSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCSSF-MY 94 (235)
Q Consensus 21 ~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~da-----wA~halahvl~~~Gr~~egi~~l~~a~~~w~~~~~~-l~ 94 (235)
.+.++...|-++...|++++|++.+++||+++|++. .++..+|.++..+|++++|+..++++....+..+.. ..
T Consensus 11 ~ae~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 90 (366)
T d1hz4a_ 11 HAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYA 90 (366)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred hHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHH
Confidence 456778889999999999999999999999999984 588889999999999999999999998876654321 11
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHhhchhh
Q 026637 95 THNWWHVALCYLEGHSPMRKVLEIYDNHIWKE 126 (235)
Q Consensus 95 ~H~~WHlAL~~le~G~~~deAl~~yd~~i~~~ 126 (235)
....-.++..+...| ++++++..|.+.+...
T Consensus 91 ~~~~~~~~~~~~~~~-~~~~a~~~~~~al~~~ 121 (366)
T d1hz4a_ 91 LWSLIQQSEILFAQG-FLQTAWETQEKAFQLI 121 (366)
T ss_dssp HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHh
Confidence 223334778888888 9999999999887653
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.49 E-value=1e-06 Score=70.45 Aligned_cols=63 Identities=10% Similarity=-0.131 Sum_probs=52.7
Q ss_pred hHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhh
Q 026637 23 FIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSST 85 (235)
Q Consensus 23 ~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~~a~~~ 85 (235)
.++..++-.+.+.|++++|...++++++++|.+..++-.++.++...|++++|+..++++.+.
T Consensus 68 ~a~~~la~~~~~~g~~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~ 130 (179)
T d2ff4a2 68 LAHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTT 130 (179)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCchHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 356677778888888888888888888888888888888888888888888888887776554
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=98.44 E-value=1.7e-07 Score=72.35 Aligned_cols=89 Identities=16% Similarity=0.026 Sum_probs=77.5
Q ss_pred CChhhHHHHHHhhcCCCCCC------------hhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCC-----------CHHH
Q 026637 2 GRPDLCFDIIHQVLPYNQQE------------DFIFGILAFSLLELGQMSDAEEAAKKGLKINKH-----------DCWS 58 (235)
Q Consensus 2 G~~~~al~~~~ral~~~p~~------------~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~-----------dawA 58 (235)
|++++|+...++++...|.. +..+.++|.++...|+|++|.+...+||++.|+ .+.+
T Consensus 23 g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~a 102 (156)
T d2hr2a1 23 GEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISA 102 (156)
T ss_dssp TCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccchhHHH
Confidence 88999999999999866543 357889999999999999999999999988653 2447
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHchhhhccCC
Q 026637 59 QHALCHVLQHDCCFKEAVQFMEECSSTWSSCS 90 (235)
Q Consensus 59 ~halahvl~~~Gr~~egi~~l~~a~~~w~~~~ 90 (235)
+.++|.++...|++++|+..++++....|..+
T Consensus 103 ~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~~ 134 (156)
T d2hr2a1 103 VYSRALALDGLGRGAEAMPEFKKVVEMIEERK 134 (156)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHhhHHhh
Confidence 88999999999999999999999999887654
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.37 E-value=8.3e-07 Score=69.03 Aligned_cols=74 Identities=20% Similarity=0.037 Sum_probs=68.6
Q ss_pred CCChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHH
Q 026637 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKE 74 (235)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~e 74 (235)
+|+.++|+..+.+|+..+|+++.++..+|.++...|++++|+..+++|++++|++..+...+..+........+
T Consensus 90 ~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~~l~~~~~ 163 (169)
T d1ihga1 90 MSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKD 163 (169)
T ss_dssp TTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred hcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999988876655444
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.35 E-value=1.4e-07 Score=80.17 Aligned_cols=116 Identities=11% Similarity=-0.005 Sum_probs=97.3
Q ss_pred CChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCC--HHHHHHHHHHHHhhCCCCHHHH-HHHHHHHHHcCCHHHHHHH
Q 026637 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQ--MSDAEEAAKKGLKINKHDCWSQ-HALCHVLQHDCCFKEAVQF 78 (235)
Q Consensus 2 G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~--~~~Ae~~arrAL~L~P~dawA~-halahvl~~~Gr~~egi~~ 78 (235)
|+..+++...++++..+|.++.+...++.++...++ +++|.....++++++|++..+. +..+.++...|++++++.+
T Consensus 87 ~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~ 166 (334)
T d1dcea1 87 ALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAF 166 (334)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHH
Confidence 346789999999999999999999999999988875 8999999999999999999986 5677888889999999999
Q ss_pred HHHchhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhc
Q 026637 79 MEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHI 123 (235)
Q Consensus 79 l~~a~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i 123 (235)
++++....|..+ -.|-+++..+...| ++++|...+++.+
T Consensus 167 ~~~~i~~~p~~~-----~a~~~l~~~~~~~~-~~~~A~~~~~~~~ 205 (334)
T d1dcea1 167 TDSLITRNFSNY-----SSWHYRSCLLPQLH-PQPDSGPQGRLPE 205 (334)
T ss_dssp HHTTTTTTCCCH-----HHHHHHHHHHHHHS-CCCCSSSCCSSCH
T ss_pred HHHHHHcCCCCH-----HHHHHHHHHHHHhc-CHHHHHHHHHHhH
Confidence 999999998742 23445888888887 8887766554433
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.32 E-value=3.3e-06 Score=64.91 Aligned_cols=93 Identities=8% Similarity=0.000 Sum_probs=79.9
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHhhCCCCH----------------HHHHHHHHHHHHcCCHHHHHHHHHHchhhhccCC
Q 026637 27 ILAFSLLELGQMSDAEEAAKKGLKINKHDC----------------WSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCS 90 (235)
Q Consensus 27 ~~Af~L~e~g~~~~Ae~~arrAL~L~P~da----------------wA~halahvl~~~Gr~~egi~~l~~a~~~w~~~~ 90 (235)
-.|-.+...|+|.+|+..+++||.+-|... -.+.++|.++...|++++++..++++...+|..
T Consensus 22 ~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~- 100 (153)
T d2fbna1 22 EEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNN- 100 (153)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC-
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhccccccchh-
Confidence 355667789999999999999998777554 255679999999999999999999999999773
Q ss_pred cchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026637 91 SFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 125 (235)
Q Consensus 91 ~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~ 125 (235)
.-.++.+|.++..+| ++++|+..|.+.+..
T Consensus 101 ----~ka~~~~g~~~~~lg-~~~~A~~~~~~al~l 130 (153)
T d2fbna1 101 ----VKALYKLGVANMYFG-FLEEAKENLYKAASL 130 (153)
T ss_dssp ----HHHHHHHHHHHHHHT-CHHHHHHHHHHHHHH
T ss_pred ----hhhhHHhHHHHHHcC-CHHHHHHHHHHHHHh
Confidence 235567999999998 999999999999877
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.32 E-value=5.7e-06 Score=69.71 Aligned_cols=118 Identities=5% Similarity=-0.072 Sum_probs=65.0
Q ss_pred CChhhHHHHHHhhcCCCCCCh-hHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH-HcCCHHHHHHHH
Q 026637 2 GRPDLCFDIIHQVLPYNQQED-FIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQ-HDCCFKEAVQFM 79 (235)
Q Consensus 2 G~~~~al~~~~ral~~~p~~~-~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~-~~Gr~~egi~~l 79 (235)
|+.+.++...++++...|.++ .++-.++-.+...|.+++|++...+|+...|.+...+...+-... ..|+.+.|...+
T Consensus 113 ~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~~~~~~~~~a~~e~~~~~~~~~a~~i~ 192 (308)
T d2onda1 113 MKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIF 192 (308)
T ss_dssp TCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhccCHHHHHHHH
Confidence 455556666666665555443 233444444445556666666666666666666555555544322 245566666666
Q ss_pred HHchhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026637 80 EECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 125 (235)
Q Consensus 80 ~~a~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~ 125 (235)
++.....|.. ..+|...+.++...| ++++|..+|++.|..
T Consensus 193 e~~l~~~p~~-----~~~w~~y~~~~~~~g-~~~~aR~~fe~ai~~ 232 (308)
T d2onda1 193 ELGLKKYGDI-----PEYVLAYIDYLSHLN-EDNNTRVLFERVLTS 232 (308)
T ss_dssp HHHHHHHTTC-----HHHHHHHHHHHHTTC-CHHHHHHHHHHHHHS
T ss_pred HHHHHhhhhh-----HHHHHHHHHHHHHcC-ChHHHHHHHHHHHHh
Confidence 6666555543 245555566666665 566666666666554
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=98.26 E-value=1.1e-06 Score=68.52 Aligned_cols=74 Identities=9% Similarity=0.039 Sum_probs=68.6
Q ss_pred CCChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHH
Q 026637 1 MGRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKE 74 (235)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~e 74 (235)
+|+.++++..+++++..+|+++.++..+|.++.+.|+|++|++.+.++++++|+++.+...++.+....+...+
T Consensus 77 l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~e 150 (168)
T d1kt1a1 77 LREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKAKEHNE 150 (168)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred hhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999988766665543
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.20 E-value=6.5e-06 Score=68.90 Aligned_cols=124 Identities=10% Similarity=-0.019 Sum_probs=98.1
Q ss_pred CCChhhHHHHHHhhcCCCCCC------hhHHHHHHHHHHH-hCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHH
Q 026637 1 MGRPDLCFDIIHQVLPYNQQE------DFIFGILAFSLLE-LGQMSDAEEAAKKGLKINKHD------CWSQHALCHVLQ 67 (235)
Q Consensus 1 ~G~~~~al~~~~ral~~~p~~------~~~~g~~Af~L~e-~g~~~~Ae~~arrAL~L~P~d------awA~halahvl~ 67 (235)
+|+++++.....+++...+.. ..++..+|-++.. .|++++|++..++|+++.+.+ ..++..+|.++.
T Consensus 90 ~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~ 169 (290)
T d1qqea_ 90 GGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKA 169 (290)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred hCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHH
Confidence 589999999999999875433 3456666666644 699999999999999986554 455888999999
Q ss_pred HcCCHHHHHHHHHHchhhhccCCcc--hhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026637 68 HDCCFKEAVQFMEECSSTWSSCSSF--MYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 125 (235)
Q Consensus 68 ~~Gr~~egi~~l~~a~~~w~~~~~~--l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~ 125 (235)
.+|++++|+..+++.....+..+.. -....+...+++++..| +++.|...+++.+..
T Consensus 170 ~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-d~~~A~~~~~~~~~~ 228 (290)
T d1qqea_ 170 LDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAAT-DAVAAARTLQEGQSE 228 (290)
T ss_dssp HTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTT-CHHHHHHHHHGGGCC
T ss_pred HcChHHHHHHHHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhc-cHHHHHHHHHHHHHh
Confidence 9999999999999998888775421 01123456888999988 899999999988765
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.12 E-value=8.7e-06 Score=57.84 Aligned_cols=66 Identities=8% Similarity=-0.102 Sum_probs=58.8
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhhCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHchhhhccCC
Q 026637 25 FGILAFSLLELGQMSDAEEAAKKGLKINKHD-------CWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSCS 90 (235)
Q Consensus 25 ~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~d-------awA~halahvl~~~Gr~~egi~~l~~a~~~w~~~~ 90 (235)
...+|.++.+.|+|++|+...++|+++.|++ +.++.++|.++..+|++++|+..++++....|+.+
T Consensus 8 c~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~ 80 (95)
T d1tjca_ 8 SFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQ 80 (95)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCH
Confidence 3467777889999999999999999997765 57899999999999999999999999999998854
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.09 E-value=0.00022 Score=59.60 Aligned_cols=185 Identities=14% Similarity=0.065 Sum_probs=125.7
Q ss_pred hhhHHHHHHhhcC-CCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHH
Q 026637 4 PDLCFDIIHQVLP-YNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCW-SQHALCHVLQHDCCFKEAVQFMEE 81 (235)
Q Consensus 4 ~~~al~~~~ral~-~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~daw-A~halahvl~~~Gr~~egi~~l~~ 81 (235)
.++++...+|++. ..|.+...+..++..++.+|.+++|+...+++|+.+|.+.. .+...+......|..+++...+++
T Consensus 80 ~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~ 159 (308)
T d2onda1 80 SDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKK 159 (308)
T ss_dssp HHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 4678899999997 47888888999999999999999999999999999998864 567888899999999999999999
Q ss_pred chhhhccCCcchhHHHHHHHHHHHHh-CCCCHHHHHHHHHhhchhhhcCCCCCchHhHhHHHHHHHHHHhcCcccccccc
Q 026637 82 CSSTWSSCSSFMYTHNWWHVALCYLE-GHSPMRKVLEIYDNHIWKELEKPDAVHPEVYLNALGLLLRVYVRGELDVFGNR 160 (235)
Q Consensus 82 a~~~w~~~~~~l~~H~~WHlAL~~le-~G~~~deAl~~yd~~i~~~~~~~~~~~~~~~~da~sLL~Rl~l~G~~~~~g~r 160 (235)
+...-|..+ +.|.-.|..... .| +.+.|..+|++.+... ++. ..-.+..+.++.+ .| + -++
T Consensus 160 al~~~~~~~-----~~~~~~a~~e~~~~~-~~~~a~~i~e~~l~~~--p~~---~~~w~~y~~~~~~---~g-~---~~~ 221 (308)
T d2onda1 160 AREDARTRH-----HVYVTAALMEYYCSK-DKSVAFKIFELGLKKY--GDI---PEYVLAYIDYLSH---LN-E---DNN 221 (308)
T ss_dssp HHTSTTCCT-----HHHHHHHHHHHHTSC-CHHHHHHHHHHHHHHH--TTC---HHHHHHHHHHHHT---TC-C---HHH
T ss_pred HHHhCCCcH-----HHHHHHHHHHHHhcc-CHHHHHHHHHHHHHhh--hhh---HHHHHHHHHHHHH---cC-C---hHH
Confidence 988877643 455446655433 45 8999999999999763 221 2223333333322 12 2 245
Q ss_pred hHHHHHHHHhhhcchh----cchhhHHHHHHHhcCCCchHHHHHHHHHHHHh
Q 026637 161 LKVLADCVADQANWYL----ECHLDLLILWALANTGEVSKAEDLLKGLKSRH 208 (235)
Q Consensus 161 w~~la~~~~~~~~~~~----~~F~d~H~~~al~~ag~~~~~~~ll~~~~~~~ 208 (235)
-..+.+..-...+.+. ..|....-.- ...|+.+.+..+.+++...-
T Consensus 222 aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE--~~~G~~~~~~~~~~r~~~~~ 271 (308)
T d2onda1 222 TRVLFERVLTSGSLPPEKSGEIWARFLAFE--SNIGDLASILKVEKRRFTAF 271 (308)
T ss_dssp HHHHHHHHHHSSSSCGGGCHHHHHHHHHHH--HHHSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHHHH--HHcCCHHHHHHHHHHHHHHC
Confidence 5566665443222211 1222221111 34578777777766555443
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.82 E-value=5.8e-06 Score=75.09 Aligned_cols=67 Identities=9% Similarity=-0.068 Sum_probs=62.5
Q ss_pred hHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhhccC
Q 026637 23 FIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSC 89 (235)
Q Consensus 23 ~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~~a~~~w~~~ 89 (235)
..+..+|..+...|+|++|+..+++|++++|+++.+++.+|.++..+|++.+|+.++.++....|..
T Consensus 153 ~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~ 219 (497)
T d1ya0a1 153 HCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPF 219 (497)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCC
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC
Confidence 5777899999999999999999999999999999999999999999999999999999998876543
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.72 E-value=2.9e-05 Score=65.52 Aligned_cols=57 Identities=19% Similarity=0.211 Sum_probs=54.3
Q ss_pred HHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHchhhhccC
Q 026637 33 LELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEECSSTWSSC 89 (235)
Q Consensus 33 ~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~~Gr~~egi~~l~~a~~~w~~~ 89 (235)
...|++++|++.++++|+.+|+|+.+...++.++..+|++++|+..++++....|..
T Consensus 7 L~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~ 63 (264)
T d1zbpa1 7 LSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEY 63 (264)
T ss_dssp TTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGG
T ss_pred HHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCc
Confidence 467999999999999999999999999999999999999999999999999998774
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=96.60 E-value=0.0096 Score=43.55 Aligned_cols=110 Identities=7% Similarity=-0.060 Sum_probs=82.1
Q ss_pred ChhhHHHHHHhhcCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----cCCHHHHHHH
Q 026637 3 RPDLCFDIIHQVLPYNQQEDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQH----DCCFKEAVQF 78 (235)
Q Consensus 3 ~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~----~Gr~~egi~~ 78 (235)
|.++++...+++.... ++.+...++ .....++++|....++|.+ .+++.|...||..+.. .-++++|+.+
T Consensus 8 d~~~A~~~~~kaa~~g--~~~a~~~l~--~~~~~~~~~a~~~~~~aa~--~g~~~a~~~Lg~~y~~g~~~~~d~~~A~~~ 81 (133)
T d1klxa_ 8 DLKKAIQYYVKACELN--EMFGCLSLV--SNSQINKQKLFQYLSKACE--LNSGNGCRFLGDFYENGKYVKKDLRKAAQY 81 (133)
T ss_dssp HHHHHHHHHHHHHHTT--CTTHHHHHH--TCTTSCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHCSSSCCCHHHHHHH
T ss_pred CHHHHHHHHHHHHHCC--Chhhhhhhc--cccccCHHHHHHHHhhhhc--ccchhhhhhHHHhhhhccccchhhHHHHHH
Confidence 4678889999988763 444444443 3445689999999999976 4799999999998875 4568999999
Q ss_pred HHHchhhhccCCcchhHHHHHHHHHHHHh----CCCCHHHHHHHHHhhchhh
Q 026637 79 MEECSSTWSSCSSFMYTHNWWHVALCYLE----GHSPMRKVLEIYDNHIWKE 126 (235)
Q Consensus 79 l~~a~~~w~~~~~~l~~H~~WHlAL~~le----~G~~~deAl~~yd~~i~~~ 126 (235)
++++...-.. ...+ .++.+|.. .. ++++|+++|.++....
T Consensus 82 ~~~aa~~g~~-----~a~~--~Lg~~y~~G~gv~~-d~~~A~~~~~~Aa~~G 125 (133)
T d1klxa_ 82 YSKACGLNDQ-----DGCL--ILGYKQYAGKGVVK-NEKQAVKTFEKACRLG 125 (133)
T ss_dssp HHHHHHTTCH-----HHHH--HHHHHHHHTSSSCC-CHHHHHHHHHHHHHTT
T ss_pred HhhhhccCcc-----hHHH--HHHHHHHcCCccCC-CHHHHHHHHHHHHHCC
Confidence 9999765321 1333 38888876 23 7999999999987763
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.57 E-value=0.0027 Score=47.78 Aligned_cols=68 Identities=7% Similarity=-0.192 Sum_probs=57.0
Q ss_pred hhHHHHHHHHHHHhC---CHHHHHHHHHHHHhhCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHchhhhccC
Q 026637 22 DFIFGILAFSLLELG---QMSDAEEAAKKGLKINKHDC-WSQHALCHVLQHDCCFKEAVQFMEECSSTWSSC 89 (235)
Q Consensus 22 ~~~~g~~Af~L~e~g---~~~~Ae~~arrAL~L~P~da-wA~halahvl~~~Gr~~egi~~l~~a~~~w~~~ 89 (235)
...-+.+|++|.... +.++|+.+.+..+..+|.+. ..+..+|.+++..|++++|..+++......|..
T Consensus 35 ~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n 106 (124)
T d2pqrb1 35 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNN 106 (124)
T ss_dssp HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC
T ss_pred cchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCc
Confidence 467788888888654 55679999999999998774 788999999999999999999999999988874
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=95.90 E-value=0.27 Score=38.40 Aligned_cols=95 Identities=13% Similarity=0.071 Sum_probs=67.0
Q ss_pred ChhHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHchhhhccCCcchhHH
Q 026637 21 EDFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQH----DCCFKEAVQFMEECSSTWSSCSSFMYTH 96 (235)
Q Consensus 21 ~~~~~g~~Af~L~e~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~----~Gr~~egi~~l~~a~~~w~~~~~~l~~H 96 (235)
||-++..+|-.+...+++++|++.+++|.++ +|+.|...||.++.. ..+...+..+++.....-.. ...
T Consensus 1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~~~-----~a~ 73 (265)
T d1ouva_ 1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL--KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYS-----NGC 73 (265)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH-----HHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccccc-----chh
Confidence 4556666777777888999999999998654 688889999998887 66888888888887654311 112
Q ss_pred HHHHHHHHHHh----CCCCHHHHHHHHHhhchh
Q 026637 97 NWWHVALCYLE----GHSPMRKVLEIYDNHIWK 125 (235)
Q Consensus 97 ~~WHlAL~~le----~G~~~deAl~~yd~~i~~ 125 (235)
+. ++..+.. .+ +.+.|+..|+..+..
T Consensus 74 ~~--l~~~~~~~~~~~~-~~~~a~~~~~~a~~~ 103 (265)
T d1ouva_ 74 HL--LGNLYYSGQGVSQ-NTNKALQYYSKACDL 103 (265)
T ss_dssp HH--HHHHHHHTSSSCC-CHHHHHHHHHHHHHT
T ss_pred hc--cccccccccccch-hhHHHHHHHhhhhhh
Confidence 21 5555543 23 678888888776654
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.65 E-value=0.016 Score=43.37 Aligned_cols=65 Identities=8% Similarity=-0.067 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHc---CCHHHHHHHHHHchhhhccCCcchhHHHHHHHHHHHHhCCCCHHHHHHHHHhhchh
Q 026637 56 CWSQHALCHVLQHD---CCFKEAVQFMEECSSTWSSCSSFMYTHNWWHVALCYLEGHSPMRKVLEIYDNHIWK 125 (235)
Q Consensus 56 awA~halahvl~~~---Gr~~egi~~l~~a~~~w~~~~~~l~~H~~WHlAL~~le~G~~~deAl~~yd~~i~~ 125 (235)
+.+.+..|+++... .+.++||..+++..+..|.. +.-.+.++|+.|+.+| +|++|++.+++.+..
T Consensus 35 ~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~----~rd~lY~Lav~yyklg-dy~~A~~~~~~~L~i 102 (124)
T d2pqrb1 35 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESR----RRECLYYLTIGCYKLG-EYSMAKRYVDTLFEH 102 (124)
T ss_dssp HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGG----HHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchh----HHHHHHHHHHHHHHHh-hHHHHHHHHHHHHcc
Confidence 67778888888754 44568888888887665432 1224456888888887 888888888887654
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=95.36 E-value=0.081 Score=38.20 Aligned_cols=80 Identities=13% Similarity=-0.056 Sum_probs=65.4
Q ss_pred CChhhHHHHHHhhcCCCCCChhHHHHHHHHHHH----hCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----cCCHH
Q 026637 2 GRPDLCFDIIHQVLPYNQQEDFIFGILAFSLLE----LGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQH----DCCFK 73 (235)
Q Consensus 2 G~~~~al~~~~ral~~~p~~~~~~g~~Af~L~e----~g~~~~Ae~~arrAL~L~P~dawA~halahvl~~----~Gr~~ 73 (235)
.+.++++...+++... +++.+...+|..+.. ..++.+|.+.+++|.+. .++.|...|+.+++. ..+.+
T Consensus 37 ~~~~~a~~~~~~aa~~--g~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~--g~~~a~~~Lg~~y~~G~gv~~d~~ 112 (133)
T d1klxa_ 37 INKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEK 112 (133)
T ss_dssp SCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHH
T ss_pred cCHHHHHHHHhhhhcc--cchhhhhhHHHhhhhccccchhhHHHHHHHhhhhcc--CcchHHHHHHHHHHcCCccCCCHH
Confidence 3567788888888654 788888889988865 44789999999999865 689999999998876 45899
Q ss_pred HHHHHHHHchhh
Q 026637 74 EAVQFMEECSST 85 (235)
Q Consensus 74 egi~~l~~a~~~ 85 (235)
+|+.|++++.+.
T Consensus 113 ~A~~~~~~Aa~~ 124 (133)
T d1klxa_ 113 QAVKTFEKACRL 124 (133)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHC
Confidence 999999988665
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