Citrus Sinensis ID: 026654

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-----
Protein Sequence
MISDVPPTVAETKMNFLKLYKRPIPSIYNTVLQELIVQQHLMRYKRTYQYDPVFALGFVTVYDRLMEGYPSEEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLVEFPSKEGEVEGLLKDIAERASGKGNFSYSRFFAVGLFRLLELANATEPTVLEKLCAVLNVNKRSVDRDLDVYRNLLSKLLQAKELLKEYVDREKKKREERTEPQKANEAIKKCLGEYLYSHQ
Secondary Structure (PSIPRED)
ccccccccHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHcccHHHHHHcccccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHccccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHcccccccc
Secondary Structure Prediction (SSPRO)
ccccccccHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHcccHHHHHHHHHccccccHHHHHHHHHHHccccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHcccHHHccc
Coil and Loop (DISEMBL)
misdvpptVAETKMNFLKlykrpipsiYNTVLQELIVQQHLMRykrtyqydpvfALGFVTVYDRlmegypseeDREAIFQAYITALKEDPEQYRIDAQKLEEWargqtasslvefpskegevEGLLKDIAERasgkgnfsySRFFAVGLFRLLELANATEPTVLEKLCAVLNVNKRSVDRDLDVYRNLLSKLLQAKELLKEYVDREKKkreertepqKANEAIKKCLGEYLYSHQ
Flexible Loop (DISEMBL)
MISDVPPTVAETKMNFLKLYKRPIPSIYNTVLQELIVQQHLMRYKRTYQYDPVFALGFVTVYDRLMEGYPSEEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQtasslvefpskegEVEGLLKDIAERASGKGNFSYSRFFAVGLFRLLELANATEPTVLEKLCAVlnvnkrsvdrdldVYRNLLSKLlqakellkeyvdrekkkreertepqkaneaiKKCLGEYLYSHQ
Low Complexity Region (SEG)
MISDVPPTVAETKMNFLKLYKRPIPSIYNTVLQELIVQQHLMRYKRTYQYDPVFALGFVTVYDRLMEGYPSEEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLVEFPSKEGEVEGLLKDIAERASGKGNFSYSRFFAVGLFRLLELANATEPTVLEKLCAVLNVNKRSVDRDLDVYRNllskllqakellkEYVDrekkkreerTEPQKANEAIKKCLGEYLYSHQ
Disordered region (IsUnstruct)
************KMNFLKLYKRPIPSIYNTVLQELIVQQHLMRYKRTYQYDPVFALGFVTVYDRLMEGYPSEEDREAIFQAYITALKEDPEQYRIDAQKL*EW*********************LLKDIAERASGKGNFSYSRFFAVGLFRLLELANATEPTVLEKLCAVLNVNKRSVDRDLDVYRNLLSKLLQAKELLKEY***********************CLGEYL****
Disordered Region (DISOPRED)
****VPPTVAETKMNFLKLYKRPIPSIYNTVLQELIVQQHLMRYKRTYQYDPVFALGFVTVYDRLMEGYPSEEDREAIFQAYITALKEDPEQYRIDA*********************************ERASGKGNFSYSRFFAVGLFRLLELANATEPTVLEKLCAVLNVNKRSVDRDLDVYRNLLSKLLQAKELLK***********************************
Disordered Region (DISEMBL)
MISDVPPTVAETKMNFLKLYKRPIPSIYNTVLQELIVQQHLMRYKRTYQYDPVFALGFVTVYDRLMEGYPSEEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLVEFPSKEGEVEGLLKDIAERASGKGNFSYSRFFAVGLFRLLELANATEPTVLEKLCAVLNVNKRSVDRDLDVYRNLLSKLLQAKELLKEYVD**************ANEAIKKCLGEYLYSHQ
Disordered Region (DISPRO)
****VPPTVAETKMNFLKLYKRPIPSIYNTVLQELIVQQHLMRYKRTYQYDPVFALGFVTVYDRLMEGYPSEEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLVEFPSKEGEVEGLLKDIAERASGKGNFSYSRFFAVGLFRLLELANATEPTVLEKLCAVLNVNKRSVDRDLDVYRNLLSKLLQAKELLKEYVDREKKKREER************CLGE******
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MISDVPPTVAETKMNFLKLYKRPIPSIYNTVLQELIVQQHLMRYKRTYQYDPVFALGFVTVYDRLMEGYPSEEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLVEFPSKEGEVEGLLKDIAERASGKGNFSYSRFFAVGLFRLLELANATEPTVLEKLCAVLNVNKRSVDRDLDVxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxPQKANEAIKKCLGEYLYSHQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	235	2.2.26 [Sep-21-2011]
Q9SKT0	300	Protein THYLAKOID FORMATI	yes	no	0.987	0.773	0.781	1e-106
Q7XAB8	293	Protein THYLAKOID FORMATI	N/A	no	0.961	0.771	0.788	1e-104
Q84PB7	287	Protein THYLAKOID FORMATI	yes	no	0.957	0.783	0.822	1e-101
B0C3M8	247	Protein thf1 OS=Acaryochl	yes	no	0.851	0.809	0.370	3e-38
Q116P5	239	Protein thf1 OS=Trichodes	yes	no	0.880	0.866	0.379	1e-36
B8HQ62	236	Protein thf1 OS=Cyanothec	yes	no	0.910	0.906	0.390	4e-36
Q8YZ41	233	Protein thf1 OS=Nostoc sp	yes	no	0.868	0.875	0.361	6e-36
B2J353	235	Protein thf1 OS=Nostoc pu	yes	no	0.876	0.876	0.352	2e-35
Q3M4B2	233	Protein thf1 OS=Anabaena	yes	no	0.868	0.875	0.357	2e-35
Q5N664	254	Protein thf1 OS=Synechoco	yes	no	0.880	0.814	0.341	2e-31

>sp|Q9SKT0|THF1_ARATH Protein THYLAKOID FORMATION 1, chloroplastic OS=Arabidopsis thaliana GN=THF1 PE=1 SV=1

 Score =  385 bits (988), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 182/233 (78%), Positives = 211/233 (90%), Gaps = 1/233 (0%)

Query: 1   MISDVPPTVAETKMNFLKLYKRPIPSIYNTVLQELIVQQHLMRYKRTYQYDPVFALGFVT 60
           + +DVPP V+ETK  FLK YKRPIPSIYNTVLQELIVQQHLMRYK+TY+YDPVFALGFVT
Sbjct: 60  VTADVPP-VSETKSKFLKAYKRPIPSIYNTVLQELIVQQHLMRYKKTYRYDPVFALGFVT 118

Query: 61  VYDRLMEGYPSEEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLVEFPSKEG 120
           VYD+LMEGYPS++DR+AIF+AYI AL EDP+QYRIDAQK+EEWAR QT++SLV+F SKEG
Sbjct: 119 VYDQLMEGYPSDQDRDAIFKAYIEALNEDPKQYRIDAQKMEEWARSQTSASLVDFSSKEG 178

Query: 121 EVEGLLKDIAERASGKGNFSYSRFFAVGLFRLLELANATEPTVLEKLCAVLNVNKRSVDR 180
           ++E +LKDIA RA  K  FSYSRFFAVGLFRLLELA+AT+PTVL+KLCA LN+NK+SVDR
Sbjct: 179 DIEAVLKDIAGRAGSKEGFSYSRFFAVGLFRLLELASATDPTVLDKLCASLNINKKSVDR 238

Query: 181 DLDVYRNLLSKLLQAKELLKEYVDREKKKREERTEPQKANEAIKKCLGEYLYS 233
           DLDVYRNLLSKL+QAKELLKEYV+REKKK+ ER + QKANE I KCLG+ LY+
Sbjct: 239 DLDVYRNLLSKLVQAKELLKEYVEREKKKQGERAQSQKANETISKCLGDTLYN 291

Involved in a dynamic process of vesicle-mediated thylakoid membrane biogenesis. Required for the normal organization of vesicles into mature thylakoid stacks and ultimately for leaf development. Also involved in a sugar-signaling mechanism in roots by mediating signaling between the plasma membrane and the plastid. Probably acts downstream of the plasma membrane-delimited heterotrimeric G-protein GPA1 in a D-glucose signaling pathway.
Arabidopsis thaliana (taxid: 3702)

>sp|Q7XAB8|THF1_SOLTU Protein THYLAKOID FORMATION1, chloroplastic OS=Solanum tuberosum GN=THF1 PE=2 SV=1

 Score =  377 bits (969), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 179/227 (78%), Positives = 201/227 (88%), Gaps = 1/227 (0%)

Query: 7   PTVAETKMNFLKLYKRPIPSIYNTVLQELIVQQHLMRYKRTYQYDPVFALGFVTVYDRLM 66
           PTVA+TK+ FL  YKRPIP++YNTVLQELIVQQHL RYK++YQYDPVFALGFVTVYD+LM
Sbjct: 66  PTVADTKLKFLTAYKRPIPTVYNTVLQELIVQQHLTRYKKSYQYDPVFALGFVTVYDQLM 125

Query: 67  EGYPSEEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLVEFPSKEGEVEGLL 126
           EGYPSEEDR AIF+AYI ALKEDPEQYR DAQKLEEWAR Q A++LV+F SKEGE+E + 
Sbjct: 126 EGYPSEEDRNAIFKAYIEALKEDPEQYRADAQKLEEWARTQNANTLVDFSSKEGEIENIF 185

Query: 127 KDIAERASGKGNFSYSRFFAVGLFRLLELANATEPTVLEKLCAVLNVNKRSVDRDLDVYR 186
           KDIA+RA  K  F YSR FAVGLFRLLELAN T+PT+LEKLCA LNVNK+SVDRDLDVYR
Sbjct: 186 KDIAQRAGTKDGFCYSRLFAVGLFRLLELANVTDPTILEKLCAALNVNKKSVDRDLDVYR 245

Query: 187 NLLSKLLQAKELLKEYVDREKKKREERTEPQKANEAIKKCLGEYLYS 233
           NLLSKL+QAKELLKEYV+REKKKR ER E QKANE + KCLG+Y Y+
Sbjct: 246 NLLSKLVQAKELLKEYVEREKKKRGER-ETQKANETVTKCLGDYQYA 291

Involved in a dynamic process of vesicle-mediated thylakoid membrane biogenesis. Required for the normal organization of vesicles into mature thylakoid stacks and ultimately for leaf development.

Solanum tuberosum (taxid: 4113)

>sp|Q84PB7|THF1_ORYSJ Protein THYLAKOID FORMATION1, chloroplastic OS=Oryza sativa subsp. japonica GN=THF1 PE=2 SV=1

 Score =  368 bits (944), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 185/225 (82%), Positives = 206/225 (91%)

Query: 4   DVPPTVAETKMNFLKLYKRPIPSIYNTVLQELIVQQHLMRYKRTYQYDPVFALGFVTVYD 63
           DVPPTVAETKMNFLK YKRPI SIY+TVLQEL+VQQHLMRYK TYQYD VFALGFVTVYD
Sbjct: 56  DVPPTVAETKMNFLKSYKRPILSIYSTVLQELLVQQHLMRYKTTYQYDAVFALGFVTVYD 115

Query: 64  RLMEGYPSEEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLVEFPSKEGEVE 123
           +LMEGYPS EDR+AIF+AYITAL EDPEQYR DAQK+EEWAR Q  +SLVEF SK+GE+E
Sbjct: 116 QLMEGYPSNEDRDAIFKAYITALNEDPEQYRADAQKMEEWARSQNGNSLVEFSSKDGEIE 175

Query: 124 GLLKDIAERASGKGNFSYSRFFAVGLFRLLELANATEPTVLEKLCAVLNVNKRSVDRDLD 183
            +LKDI+ERA GKG+FSYSRFFAVGLFRLLELANATEPT+L+KLCA LN+NKRSVDRDLD
Sbjct: 176 AILKDISERAQGKGSFSYSRFFAVGLFRLLELANATEPTILDKLCAALNINKRSVDRDLD 235

Query: 184 VYRNLLSKLLQAKELLKEYVDREKKKREERTEPQKANEAIKKCLG 228
           VYRN+LSKL+QAKELLKEYV+REKKKREER+E  K+NEA+ K  G
Sbjct: 236 VYRNILSKLVQAKELLKEYVEREKKKREERSETPKSNEAVTKFDG 280

Involved in a dynamic process of vesicle-mediated thylakoid membrane biogenesis. Required for the normal organization of vesicles into mature thylakoid stacks and ultimately for leaf development.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|B0C3M8|THF1_ACAM1 Protein thf1 OS=Acaryochloris marina (strain MBIC 11017) GN=thf1 PE=3 SV=1

 Score =  158 bits (399), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 80/216 (37%), Positives = 135/216 (62%), Gaps = 16/216 (7%)

Query: 8   TVAETKMNFLKLYKRPIPSIYNTVLQELIVQQHLMRYKRTYQYDPVFALGFVTVYDRLME 67
           TV++TK  F  ++ RP+ S+Y  V++EL+V+ HL+R    ++YDP+FALG  T +DR M+
Sbjct: 6   TVSDTKRAFYSIHTRPVNSVYRRVVEELMVEMHLLRVNEDFRYDPIFALGVTTSFDRFMD 65

Query: 68  GYPSEEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLVEFPSKEG-----EV 122
           GY  E D++AIF A   A + DP Q + D Q+L E A+ ++A  ++++ ++       E+
Sbjct: 66  GYQPENDKDAIFSAICKAQEADPVQMKKDGQRLTELAQSKSAQEMLDWITQAANSGGDEL 125

Query: 123 EGLLKDIAERASGKGNFSYSRFFAVGLFRLLELA--NATE-----PTVLEKLCAVLNVNK 175
           +  L++IA+       F YSR FA+GLF LLEL+  N T+        L  +C VLN+++
Sbjct: 126 QWQLRNIAQNPK----FKYSRLFAIGLFTLLELSEGNITQDEESLAEFLPNICTVLNISE 181

Query: 176 RSVDRDLDVYRNLLSKLLQAKELLKEYVDREKKKRE 211
             + +DL++YR  L K+ Q ++ + + ++ +KK+RE
Sbjct: 182 SKLQKDLEIYRGNLDKIAQVRQAMDDILEAQKKRRE 217

May be involved in photosynthetic membrane biogenesis.

Acaryochloris marina (strain MBIC 11017) (taxid: 329726)

>sp|Q116P5|THF1_TRIEI Protein thf1 OS=Trichodesmium erythraeum (strain IMS101) GN=thf1 PE=3 SV=1

 Score =  152 bits (385), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 82/216 (37%), Positives = 129/216 (59%), Gaps = 9/216 (4%)

Query: 8   TVAETKMNFLKLYKRPIPSIYNTVLQELIVQQHLMRYKRTYQYDPVFALGFVTVYDRLME 67
           TV++TK  F   + RPI SIYN V++EL+V+ HL+     Y Y+P +ALG VT +DR M+
Sbjct: 6   TVSDTKKTFYHFHTRPINSIYNRVIEELLVEMHLISVNVDYSYNPFYALGVVTAFDRFMQ 65

Query: 68  GYPSEEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLVEFP--SKEGEVEGL 125
           GY  +ED+ +IF A I   +EDP +YR DA+ LE+ A   +AS ++ +   SK  +    
Sbjct: 66  GYSPQEDKTSIFNALIQGQEEDPNKYRSDAKGLEDLAGKISASDILSWICLSKNIDNTQY 125

Query: 126 LKDIAERASGKGNFSYSRFFAVGLFRLLELANA-------TEPTVLEKLCAVLNVNKRSV 178
           L+D     S    F YSR FA+GLF LLE+ +             L+K+C  LN+ +  +
Sbjct: 126 LQDDLRAISENSKFRYSRLFAIGLFTLLEIVDTELIKEQEKRTEALKKICQSLNLVEEKL 185

Query: 179 DRDLDVYRNLLSKLLQAKELLKEYVDREKKKREERT 214
            +D+D+Y + L ++ QA+  +++ +   +KKRE+R+
Sbjct: 186 LKDIDLYLSNLERVAQARSAMEDTLAAMRKKREKRS 221

May be involved in photosynthetic membrane biogenesis.

Trichodesmium erythraeum (strain IMS101) (taxid: 203124)

>sp|B8HQ62|THF1_CYAP4 Protein thf1 OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=thf1 PE=3 SV=1

 Score =  151 bits (382), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 89/228 (39%), Positives = 137/228 (60%), Gaps = 14/228 (6%)

Query: 6   PPTVAETKMNFLKLYKRPIPSIYNTVLQELIVQQHLMRYKRTYQYDPVFALGFVTVYDRL 65
           P TV++TK  F   + RPI SIY  V++EL+V+ HL+R  +T+ YDPVFALG VT ++R 
Sbjct: 4   PRTVSDTKRAFYHNHARPINSIYRRVVEELLVEIHLLRVNQTFVYDPVFALGVVTTFERF 63

Query: 66  MEGYPSEEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLVEFPSKEGEVEGL 125
           M+GY    D+ +IF A   A + DP+Q + DAQ+L    RGQ+  SL+++ S    + G 
Sbjct: 64  MQGYHPPADQTSIFNAICLAQELDPQQVQQDAQELLGRVRGQSLESLLDWISTAASLGGD 123

Query: 126 LKDIAERA-SGKGNFSYSRFFAVGLFRLLELANATEP----------TVLEKLCAVLNVN 174
            +    RA +    F YSR FAVGLF LLE A   EP           VL+++  V+++ 
Sbjct: 124 EQQNRLRAIASNPTFKYSRLFAVGLFTLLEQA---EPELGKDEARLLQVLQQVGEVMHLP 180

Query: 175 KRSVDRDLDVYRNLLSKLLQAKELLKEYVDREKKKREERTEPQKANEA 222
              + +DL+ YR+ L K+ QA++ L++ V  E+K+R++   P ++ E+
Sbjct: 181 VEKMQKDLEQYRSNLEKMTQARKTLEDIVAAERKRRQQNAAPDRSPES 228

May be involved in photosynthetic membrane biogenesis.

Cyanothece sp. (strain PCC 7425 / ATCC 29141) (taxid: 395961)

>sp|Q8YZ41|THF1_NOSS1 Protein thf1 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=thf1 PE=3 SV=1

 Score =  150 bits (380), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 80/221 (36%), Positives = 134/221 (60%), Gaps = 17/221 (7%)

Query: 8   TVAETKMNFLKLYKRPIPSIYNTVLQELIVQQHLMRYKRTYQYDPVFALGFVTVYDRLME 67
           TV++TK  F  L+ RPI +IY  V++EL+V+ HL+     + Y+P++ALG VT +DR ME
Sbjct: 6   TVSDTKRTFYALHTRPINTIYRRVVEELMVEMHLLSVNVDFSYNPIYALGVVTTFDRFME 65

Query: 68  GYPSEEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLVEFPS------KEGE 121
           GY  E D+E+IF A   A++++P++YR DA++L+  A+    + LV + S      ++ +
Sbjct: 66  GYQPERDKESIFSAICQAVEQEPQRYRQDAERLQAVAQSLPVNDLVAWLSQANHLQQDAD 125

Query: 122 VEGLLKDIAERASGKGNFSYSRFFAVGLFRLLELANA-------TEPTVLEKLCAVLNVN 174
           ++  L+ IA       NF YSR FA+GLF LLE +N             L+ + A L+++
Sbjct: 126 LQAQLQAIA----NNSNFKYSRLFAIGLFTLLEQSNPDLVKDEKQRTEALKSIAAGLHLS 181

Query: 175 KRSVDRDLDVYRNLLSKLLQAKELLKEYVDREKKKREERTE 215
                +DL++YR+ L K+ QA  ++ + +  ++KKRE+R +
Sbjct: 182 DDKFSKDLELYRSNLDKMTQALAVMADMLTADRKKREQRQQ 222

May be involved in photosynthetic membrane biogenesis.

Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690)

>sp|B2J353|THF1_NOSP7 Protein thf1 OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=thf1 PE=3 SV=1

 Score =  149 bits (376), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 80/227 (35%), Positives = 137/227 (60%), Gaps = 21/227 (9%)

Query: 8   TVAETKMNFLKLYKRPIPSIYNTVLQELIVQQHLMRYKRTYQYDPVFALGFVTVYDRLME 67
           TV++TK  F  L+ RPI +IY  V++EL+V+ HL+     + Y+P++ALG VT +DR M+
Sbjct: 6   TVSDTKRTFYNLHTRPINTIYRRVVEELMVEMHLLSVNIDFSYNPIYALGVVTTFDRFMQ 65

Query: 68  GYPSEEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLV------EFPSKEGE 121
           GY  E D+E+IF A   A+++DP+ YR DA++L+  A+G     L+       +  ++ +
Sbjct: 66  GYEPERDQESIFNALCRAIEQDPQHYRQDAERLQAIAKGLPVKDLIGWLGQTTYLDRDAD 125

Query: 122 VEGLLKDIAERASGKGNFSYSRFFAVGLFRLLELANA---------TEPTVLEKLCAVLN 172
           ++  L+ IA       NF Y+R FA+G+F LLE ++          TE   L+ + A L+
Sbjct: 126 LQAQLQAIA----NNPNFKYNRLFAIGVFSLLEQSDPELVKDEKQLTE--ALKAIAAGLH 179

Query: 173 VNKRSVDRDLDVYRNLLSKLLQAKELLKEYVDREKKKREERTEPQKA 219
           V+   +++DL++YR+ L K+ QA  ++ + +  ++KKRE+R +   A
Sbjct: 180 VSDDKLNKDLELYRSNLDKMAQALVVMADMLSADRKKREQRKQQSTA 226

May be involved in photosynthetic membrane biogenesis.

Nostoc punctiforme (strain ATCC 29133 / PCC 73102) (taxid: 63737)

>sp|Q3M4B2|THF1_ANAVT Protein thf1 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=thf1 PE=3 SV=1

 Score =  149 bits (375), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 79/221 (35%), Positives = 135/221 (61%), Gaps = 17/221 (7%)

Query: 8   TVAETKMNFLKLYKRPIPSIYNTVLQELIVQQHLMRYKRTYQYDPVFALGFVTVYDRLME 67
           TV++TK  F  L+ RPI +IY  V++EL+V+ HL+     + Y+P++ALG VT +DR M+
Sbjct: 6   TVSDTKRTFYALHTRPINTIYRRVVEELMVEMHLLSVNVDFSYNPIYALGVVTTFDRFMQ 65

Query: 68  GYPSEEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLVEFPS------KEGE 121
           GY  E D+E+IF A   A++++P++YR DA++L+  A+    + LV + S      ++ +
Sbjct: 66  GYQPERDKESIFSAICQAVEQEPQRYRQDAERLKAVAQSLPVNDLVAWLSQANHLQQDAD 125

Query: 122 VEGLLKDIAERASGKGNFSYSRFFAVGLFRLLELANA-------TEPTVLEKLCAVLNVN 174
           ++  L+ IA       NF YSR FA+GLF LLE +N             L+ + A L+++
Sbjct: 126 LQAQLQAIA----SNPNFKYSRLFAIGLFTLLEQSNPDLVKDEKQRTEALKTIAAGLHLS 181

Query: 175 KRSVDRDLDVYRNLLSKLLQAKELLKEYVDREKKKREERTE 215
              + +DL++YR+ L K+ QA  ++ + +  ++KKRE+R +
Sbjct: 182 DDKLSKDLELYRSNLDKMTQALAVMADMLTADRKKREQRQQ 222

May be involved in photosynthetic membrane biogenesis.

Anabaena variabilis (strain ATCC 29413 / PCC 7937) (taxid: 240292)

>sp|Q5N664|THF1_SYNP6 Protein thf1 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=thf1 PE=3 SV=2

 Score =  135 bits (340), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 74/217 (34%), Positives = 124/217 (57%), Gaps = 10/217 (4%)

Query: 7   PTVAETKMNFLKLYKRPIPSIYNTVLQELIVQQHLMRYKRTYQYDPVFALGFVTVYDRLM 66
           PTV+++K  F   Y RPI  +Y  V++EL+V+ HL+    ++ YDP+FALG VT +D  M
Sbjct: 5   PTVSDSKRAFYAAYPRPINPLYRRVVEELLVEIHLLSVNTSFVYDPLFALGVVTAFDSFM 64

Query: 67  EGYPSEEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLVEFPSKE---GEVE 123
             Y   E    +F A   A++++PEQYR DA  + E  RG  + ++ ++ ++    G   
Sbjct: 65  SSYRPIEAVGPLFTALTQAVRQNPEQYRHDANAIAEQVRGVGSDTIRQWLTEAEALGNAP 124

Query: 124 GLLKDIAERASGKGNFSYSRFFAVGLFRLLELAN---ATEPTVLEKLCAVL----NVNKR 176
            L++   +  +G+  F YSR FA+GLF LLE A      +P  L+     +    ++   
Sbjct: 125 ELVRSSFQAIAGRSEFKYSRLFAIGLFSLLETAAPDLVQDPEALKTTVTAIAERFHLPSD 184

Query: 177 SVDRDLDVYRNLLSKLLQAKELLKEYVDREKKKREER 213
            + +DLD+YR+ L K+ QA+  ++E +  +++KRE+R
Sbjct: 185 KLQKDLDLYRSNLEKMEQARITMEEAIQADRRKREQR 221

May be involved in photosynthetic membrane biogenesis.

Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) (taxid: 269084)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	235
356543780	297	PREDICTED: protein THYLAKOID FORMATION1,	0.974	0.771	0.847	1e-112
356549970	297	PREDICTED: protein THYLAKOID FORMATION1,	0.978	0.774	0.834	1e-112
255636566	297	unknown [Glycine max]	0.978	0.774	0.834	1e-112
388514959	303	unknown [Medicago truncatula]	0.987	0.765	0.819	1e-112
359485791	299	PREDICTED: protein THYLAKOID FORMATION1,	0.982	0.772	0.840	1e-111
296084957	243	unnamed protein product [Vitis vinifera]	0.982	0.950	0.840	1e-111
255553917	299	Protein THYLAKOID FORMATION1, chloroplas	0.974	0.765	0.830	1e-111
449438054	298	PREDICTED: protein THYLAKOID FORMATION 1	0.948	0.748	0.856	1e-110
356542877	291	PREDICTED: protein THYLAKOID FORMATION1,	0.936	0.756	0.859	1e-109
224124656	298	predicted protein [Populus trichocarpa]	0.961	0.758	0.841	1e-109

>gi|356543780|ref|XP_003540338.1| PREDICTED: protein THYLAKOID FORMATION1, chloroplastic-like [Glycine max]

 Score =  411 bits (1057), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 194/229 (84%), Positives = 214/229 (93%)

Query: 3   SDVPPTVAETKMNFLKLYKRPIPSIYNTVLQELIVQQHLMRYKRTYQYDPVFALGFVTVY 62
           +DVPPTV+ETK+NFLK YKRPIPSIYNTVLQELIVQQHLM+YKR+Y+YDPVFALGFVT+Y
Sbjct: 66  TDVPPTVSETKLNFLKAYKRPIPSIYNTVLQELIVQQHLMKYKRSYRYDPVFALGFVTIY 125

Query: 63  DRLMEGYPSEEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLVEFPSKEGEV 122
           D+LMEGYPS+EDR+AIFQAYI ALKEDPEQYRIDA+KLEEWAR Q  +SLVEF SKEGEV
Sbjct: 126 DKLMEGYPSDEDRDAIFQAYIKALKEDPEQYRIDARKLEEWARVQKPTSLVEFSSKEGEV 185

Query: 123 EGLLKDIAERASGKGNFSYSRFFAVGLFRLLELANATEPTVLEKLCAVLNVNKRSVDRDL 182
           EG+LKDIAERA GKG FSYSRFFAVGLFRLLELANATEPT+L+KLC  LN+NKRSVDRDL
Sbjct: 186 EGILKDIAERAGGKGEFSYSRFFAVGLFRLLELANATEPTILDKLCVALNINKRSVDRDL 245

Query: 183 DVYRNLLSKLLQAKELLKEYVDREKKKREERTEPQKANEAIKKCLGEYL 231
           DVYR LLSKL+QAKELLKEY+DREKKKR+ER EPQKANEAI  CLG+ L
Sbjct: 246 DVYRILLSKLVQAKELLKEYIDREKKKRDERAEPQKANEAITTCLGQQL 294

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356549970|ref|XP_003543363.1| PREDICTED: protein THYLAKOID FORMATION1, chloroplastic-like [Glycine max]

 Score =  409 bits (1052), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 192/230 (83%), Positives = 215/230 (93%)

Query: 3   SDVPPTVAETKMNFLKLYKRPIPSIYNTVLQELIVQQHLMRYKRTYQYDPVFALGFVTVY 62
           +DVPPTV+ETK+NFLK YKRPIPSIYNTVLQELIVQQHLM+YKR+Y+YDPVFALGFVT+Y
Sbjct: 66  TDVPPTVSETKLNFLKAYKRPIPSIYNTVLQELIVQQHLMKYKRSYRYDPVFALGFVTIY 125

Query: 63  DRLMEGYPSEEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLVEFPSKEGEV 122
           D+LMEGYPS+EDR+AIFQAYI ALKEDPEQYRIDA+KLEEWAR Q+ +SLVEF SKEGE 
Sbjct: 126 DKLMEGYPSDEDRDAIFQAYIKALKEDPEQYRIDARKLEEWARVQSPTSLVEFSSKEGEA 185

Query: 123 EGLLKDIAERASGKGNFSYSRFFAVGLFRLLELANATEPTVLEKLCAVLNVNKRSVDRDL 182
           E +LKDIAERA GKG FSYSRFFAVGLFRL+ELANATEPT+L+KLCA LN+NKRSVDRDL
Sbjct: 186 ERILKDIAERAGGKGEFSYSRFFAVGLFRLVELANATEPTILDKLCAALNINKRSVDRDL 245

Query: 183 DVYRNLLSKLLQAKELLKEYVDREKKKREERTEPQKANEAIKKCLGEYLY 232
           DVYR LLSKL+QAKELLKEY+DREKKKR+ER EPQKANEAI  CLG+ L+
Sbjct: 246 DVYRILLSKLVQAKELLKEYIDREKKKRDERVEPQKANEAITTCLGQQLH 295

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255636566|gb|ACU18621.1| unknown [Glycine max]

 Score =  409 bits (1051), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 192/230 (83%), Positives = 215/230 (93%)

Query: 3   SDVPPTVAETKMNFLKLYKRPIPSIYNTVLQELIVQQHLMRYKRTYQYDPVFALGFVTVY 62
           +DVPPTV+ETK+NFLK YKRPIPSIYNTVLQELIVQQHLM+YKR+Y+YDPVFALGFVT+Y
Sbjct: 66  TDVPPTVSETKLNFLKAYKRPIPSIYNTVLQELIVQQHLMKYKRSYRYDPVFALGFVTIY 125

Query: 63  DRLMEGYPSEEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLVEFPSKEGEV 122
           D+LMEGYPS+EDR+AIFQAYI ALKEDPEQYRIDA+KLEEWAR Q+ +SLVEF SKEGE 
Sbjct: 126 DKLMEGYPSDEDRDAIFQAYIKALKEDPEQYRIDARKLEEWARVQSPTSLVEFSSKEGEA 185

Query: 123 EGLLKDIAERASGKGNFSYSRFFAVGLFRLLELANATEPTVLEKLCAVLNVNKRSVDRDL 182
           E +LKDIAERA GKG FSYSRFFAVGLFRL+ELANATEPT+L+KLCA LN+NKRSVDRDL
Sbjct: 186 ERILKDIAERAGGKGEFSYSRFFAVGLFRLVELANATEPTILDKLCAALNINKRSVDRDL 245

Query: 183 DVYRNLLSKLLQAKELLKEYVDREKKKREERTEPQKANEAIKKCLGEYLY 232
           DVYR LLSKL+QAKELLKEY+DREKKKR+ER EPQKANEAI  CLG+ L+
Sbjct: 246 DVYRILLSKLVQAKELLKEYIDREKKKRDERVEPQKANEAITTCLGQQLH 295

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388514959|gb|AFK45541.1| unknown [Medicago truncatula]

 Score =  409 bits (1051), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 191/233 (81%), Positives = 215/233 (92%), Gaps = 1/233 (0%)

Query: 2   ISDVPPTVAETKMNFLKLYKRPIPSIYNTVLQELIVQQHLMRYKRTYQYDPVFALGFVTV 61
           +SD PPTV+ETK+NFLK YKRPIPSIYN+VLQELIVQQHLMRYK++Y+YDPVFALGFVTV
Sbjct: 68  VSD-PPTVSETKLNFLKAYKRPIPSIYNSVLQELIVQQHLMRYKKSYRYDPVFALGFVTV 126

Query: 62  YDRLMEGYPSEEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLVEFPSKEGE 121
           YD+LMEGYPS+EDR+AIFQAYI ALKEDP QYR+DAQKLEEWAR Q A+SL+EF S+EGE
Sbjct: 127 YDQLMEGYPSDEDRDAIFQAYINALKEDPAQYRVDAQKLEEWARAQNATSLIEFSSREGE 186

Query: 122 VEGLLKDIAERASGKGNFSYSRFFAVGLFRLLELANATEPTVLEKLCAVLNVNKRSVDRD 181
           VEG LKDIAERA G G+FSYSRFFAVGLFRLLELAN  EPT+LEKLC+ LN+NK+SVDRD
Sbjct: 187 VEGTLKDIAERAGGNGDFSYSRFFAVGLFRLLELANTMEPTILEKLCSALNINKKSVDRD 246

Query: 182 LDVYRNLLSKLLQAKELLKEYVDREKKKREERTEPQKANEAIKKCLGEYLYSH 234
           LDVYRNLLSKL+QAKELLKEY+DREKKK EER EPQKANEAI KCLG+  +S+
Sbjct: 247 LDVYRNLLSKLVQAKELLKEYIDREKKKIEERAEPQKANEAISKCLGQEQFSN 299

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359485791|ref|XP_002275686.2| PREDICTED: protein THYLAKOID FORMATION1, chloroplastic [Vitis vinifera]

 Score =  407 bits (1046), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 195/232 (84%), Positives = 215/232 (92%), Gaps = 1/232 (0%)

Query: 2   ISDVPPTVAETKMNFLKLYKRPIPSIYNTVLQELIVQQHLMRYKRTYQYDPVFALGFVTV 61
           ++DVP TV+ETKMNFLK YKRPIPSIYNT+LQEL+VQQHLMRYKRTY+YD VFALGFVTV
Sbjct: 65  VTDVP-TVSETKMNFLKNYKRPIPSIYNTLLQELMVQQHLMRYKRTYRYDAVFALGFVTV 123

Query: 62  YDRLMEGYPSEEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLVEFPSKEGE 121
           YD+LM+GYPS+EDR+ IFQ YI AL+EDPEQYR DAQ LEEWAR QTASSLVEF SKEGE
Sbjct: 124 YDQLMDGYPSDEDRDIIFQVYIKALREDPEQYRKDAQMLEEWARSQTASSLVEFSSKEGE 183

Query: 122 VEGLLKDIAERASGKGNFSYSRFFAVGLFRLLELANATEPTVLEKLCAVLNVNKRSVDRD 181
           VEG+LKDIAERA GKG+FSYSRFFA+GLFRLLELANATEPT+LEKLCA  N++KRSVDRD
Sbjct: 184 VEGILKDIAERAGGKGSFSYSRFFAIGLFRLLELANATEPTILEKLCAAFNISKRSVDRD 243

Query: 182 LDVYRNLLSKLLQAKELLKEYVDREKKKREERTEPQKANEAIKKCLGEYLYS 233
           LDVYRNLL+KL+QAKELLKEYVDREKKKREER E QKANEAI KCLGEY Y+
Sbjct: 244 LDVYRNLLTKLVQAKELLKEYVDREKKKREERVESQKANEAITKCLGEYEYT 295

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296084957|emb|CBI28372.3| unnamed protein product [Vitis vinifera]

 Score =  406 bits (1044), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 195/232 (84%), Positives = 215/232 (92%), Gaps = 1/232 (0%)

Query: 2   ISDVPPTVAETKMNFLKLYKRPIPSIYNTVLQELIVQQHLMRYKRTYQYDPVFALGFVTV 61
           ++DVP TV+ETKMNFLK YKRPIPSIYNT+LQEL+VQQHLMRYKRTY+YD VFALGFVTV
Sbjct: 9   VTDVP-TVSETKMNFLKNYKRPIPSIYNTLLQELMVQQHLMRYKRTYRYDAVFALGFVTV 67

Query: 62  YDRLMEGYPSEEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLVEFPSKEGE 121
           YD+LM+GYPS+EDR+ IFQ YI AL+EDPEQYR DAQ LEEWAR QTASSLVEF SKEGE
Sbjct: 68  YDQLMDGYPSDEDRDIIFQVYIKALREDPEQYRKDAQMLEEWARSQTASSLVEFSSKEGE 127

Query: 122 VEGLLKDIAERASGKGNFSYSRFFAVGLFRLLELANATEPTVLEKLCAVLNVNKRSVDRD 181
           VEG+LKDIAERA GKG+FSYSRFFA+GLFRLLELANATEPT+LEKLCA  N++KRSVDRD
Sbjct: 128 VEGILKDIAERAGGKGSFSYSRFFAIGLFRLLELANATEPTILEKLCAAFNISKRSVDRD 187

Query: 182 LDVYRNLLSKLLQAKELLKEYVDREKKKREERTEPQKANEAIKKCLGEYLYS 233
           LDVYRNLL+KL+QAKELLKEYVDREKKKREER E QKANEAI KCLGEY Y+
Sbjct: 188 LDVYRNLLTKLVQAKELLKEYVDREKKKREERVESQKANEAITKCLGEYEYT 239

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255553917|ref|XP_002517999.1| Protein THYLAKOID FORMATION1, chloroplast precursor, putative [Ricinus communis] gi|223542981|gb|EEF44517.1| Protein THYLAKOID FORMATION1, chloroplast precursor, putative [Ricinus communis]

 Score =  405 bits (1042), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 191/230 (83%), Positives = 213/230 (92%), Gaps = 1/230 (0%)

Query: 3   SDVPPTVAETKMNFLKLYKRPIPSIYNTVLQELIVQQHLMRYKRTYQYDPVFALGFVTVY 62
           +DVPPTV+ETK NFL  YK+PIPSIYNTVLQELIVQQHLMRYKR+Y+YDPVFALGFVTVY
Sbjct: 69  TDVPPTVSETKFNFLNSYKKPIPSIYNTVLQELIVQQHLMRYKRSYRYDPVFALGFVTVY 128

Query: 63  DRLMEGYPSEEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLVEFPSKEGEV 122
           D+LM+GYPS+EDREAIFQAYI AL E+PEQYRIDA+KLE+WAR QT SSLV+F SKEGEV
Sbjct: 129 DQLMQGYPSDEDREAIFQAYINALNEEPEQYRIDAKKLEDWARSQTPSSLVDFSSKEGEV 188

Query: 123 EGLLKDIAERASGKGNFSYSRFFAVGLFRLLELANATEPTVLEKLCAVLNVNKRSVDRDL 182
           EG+LKDIAERA G G+FSYSRFFA+GLFRLLEL+N+TEPTVLEKLCA LN+NKR VDRDL
Sbjct: 189 EGILKDIAERA-GNGSFSYSRFFAIGLFRLLELSNSTEPTVLEKLCAALNINKRGVDRDL 247

Query: 183 DVYRNLLSKLLQAKELLKEYVDREKKKREERTEPQKANEAIKKCLGEYLY 232
           DVYRNLLSKL+QAKELLKEYVDREKKK+EER   QKANEA+K CLGE L+
Sbjct: 248 DVYRNLLSKLVQAKELLKEYVDREKKKQEERASSQKANEAVKSCLGEALH 297

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449438054|ref|XP_004136805.1| PREDICTED: protein THYLAKOID FORMATION 1, chloroplastic-like [Cucumis sativus] gi|449493105|ref|XP_004159194.1| PREDICTED: protein THYLAKOID FORMATION 1, chloroplastic-like [Cucumis sativus]

 Score =  404 bits (1038), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 191/223 (85%), Positives = 207/223 (92%)

Query: 8   TVAETKMNFLKLYKRPIPSIYNTVLQELIVQQHLMRYKRTYQYDPVFALGFVTVYDRLME 67
           TVAETK+NFLK YKRPIPSIYNTVLQELIVQQHLMRYKRTY+YDPVFALGFVTVYD+LME
Sbjct: 70  TVAETKLNFLKAYKRPIPSIYNTVLQELIVQQHLMRYKRTYRYDPVFALGFVTVYDQLME 129

Query: 68  GYPSEEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLVEFPSKEGEVEGLLK 127
           GYPS+EDREAIFQAYI AL EDPEQYRIDA+K EEWAR QTA+SLVEF S+EGEVE +LK
Sbjct: 130 GYPSDEDREAIFQAYIKALNEDPEQYRIDAKKFEEWARSQTAASLVEFASREGEVESILK 189

Query: 128 DIAERASGKGNFSYSRFFAVGLFRLLELANATEPTVLEKLCAVLNVNKRSVDRDLDVYRN 187
           DIAERA  KGNFSYSRFFA+GLFRLLELANATEP++LEKLCA LN++K+ VDRDLDVYRN
Sbjct: 190 DIAERAGSKGNFSYSRFFAIGLFRLLELANATEPSILEKLCAALNIDKKGVDRDLDVYRN 249

Query: 188 LLSKLLQAKELLKEYVDREKKKREERTEPQKANEAIKKCLGEY 230
           LLSKL+QAKELLKEYVDREKKKR+ER   Q ANEAI KCLGEY
Sbjct: 250 LLSKLVQAKELLKEYVDREKKKRDERAGSQTANEAITKCLGEY 292

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356542877|ref|XP_003539891.1| PREDICTED: protein THYLAKOID FORMATION1, chloroplastic-like [Glycine max]

 Score =  401 bits (1031), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 189/220 (85%), Positives = 209/220 (95%)

Query: 6   PPTVAETKMNFLKLYKRPIPSIYNTVLQELIVQQHLMRYKRTYQYDPVFALGFVTVYDRL 65
           PPTV+ETK+NFLK YKRPIPSIYNTVLQELIVQQHLMRYKR+Y+YD VFALGFVTVY++L
Sbjct: 65  PPTVSETKLNFLKAYKRPIPSIYNTVLQELIVQQHLMRYKRSYRYDAVFALGFVTVYEQL 124

Query: 66  MEGYPSEEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLVEFPSKEGEVEGL 125
           MEGYPS+EDR+AIFQAYI ALKEDPEQYR+DA+KLEEWAR Q  +SL+EF S+EGEVEG+
Sbjct: 125 MEGYPSDEDRDAIFQAYIQALKEDPEQYRVDAKKLEEWARSQNPNSLLEFSSREGEVEGI 184

Query: 126 LKDIAERASGKGNFSYSRFFAVGLFRLLELANATEPTVLEKLCAVLNVNKRSVDRDLDVY 185
           LKDIAERA GKG+FSYSRFFA+GLFRLLELANA EPT+LEKLCAVLNVNKRSVDRDLDVY
Sbjct: 185 LKDIAERAGGKGDFSYSRFFAIGLFRLLELANAMEPTILEKLCAVLNVNKRSVDRDLDVY 244

Query: 186 RNLLSKLLQAKELLKEYVDREKKKREERTEPQKANEAIKK 225
           RNLLSKL+QAKELLKEYVDREKKKREER EPQK+NEAI +
Sbjct: 245 RNLLSKLVQAKELLKEYVDREKKKREERAEPQKSNEAITQ 284

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224124656|ref|XP_002319386.1| predicted protein [Populus trichocarpa] gi|222857762|gb|EEE95309.1| predicted protein [Populus trichocarpa]

 Score =  401 bits (1030), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 191/227 (84%), Positives = 209/227 (92%), Gaps = 1/227 (0%)

Query: 3   SDVPPTVAETKMNFLKLYKRPIPSIYNTVLQELIVQQHLMRYKRTYQYDPVFALGFVTVY 62
           +DVPPTV+ETK NFLK YKRPIPSIYNTVLQELIVQQHLMRYK+TY YDPVF LG VTVY
Sbjct: 67  TDVPPTVSETKSNFLKAYKRPIPSIYNTVLQELIVQQHLMRYKKTYLYDPVFGLGLVTVY 126

Query: 63  DRLMEGYPSEEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLVEFPSKEGEV 122
           D+LMEGYPS+EDREAIFQAYI ALKEDPEQYRIDA+KLEEWAR QT SSLV+F SKEGE+
Sbjct: 127 DQLMEGYPSDEDREAIFQAYIKALKEDPEQYRIDAKKLEEWARAQTHSSLVDFSSKEGEI 186

Query: 123 EGLLKDIAERASGKGNFSYSRFFAVGLFRLLELANATEPTVLEKLCAVLNVNKRSVDRDL 182
           EG+LK IAERA+  GNFSYSRFFAVGLFRLLEL+NA+EPTVLEKLC+ LN+NKRSVDRDL
Sbjct: 187 EGILKGIAERAAS-GNFSYSRFFAVGLFRLLELSNASEPTVLEKLCSALNINKRSVDRDL 245

Query: 183 DVYRNLLSKLLQAKELLKEYVDREKKKREERTEPQKANEAIKKCLGE 229
           DVYR LLSKL+QAKELLKEYVDREKKK+EER E QKANE + KCLG+
Sbjct: 246 DVYRGLLSKLVQAKELLKEYVDREKKKQEERAESQKANEMVAKCLGD 292

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	235
TAIR|locus:2051353	300	PSB29 "AT2G20890" [Arabidopsis	0.978	0.766	0.705	2.7e-84
UNIPROTKB|P73956	240	thf1 "Protein thf1" [Synechocy	0.765	0.75	0.340	2.1e-22

TAIR|locus:2051353 PSB29 "AT2G20890" [Arabidopsis thaliana (taxid:3702)]

 Score = 844 (302.2 bits), Expect = 2.7e-84, P = 2.7e-84
 Identities = 163/231 (70%), Positives = 189/231 (81%)

Query:     3 SDVPPTVAETKMNFLKLYKRPIPSIYNTVLQELIVQQHLMRYKRTYQYDPVFALGFVTVY 62
             +DVPP V+ETK  FLK YKRPIPSIYNTVLQELIVQQHLMRYK+TY+YDPVFALGFVTVY
Sbjct:    62 ADVPP-VSETKSKFLKAYKRPIPSIYNTVLQELIVQQHLMRYKKTYRYDPVFALGFVTVY 120

Query:    63 DRLMEGYPSEEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLVEFPSKEGEV 122
             D+LMEGYPS++DR+AIF+AYI AL EDP+QYRIDAQK+EEWAR QT++SLV+F SKEG++
Sbjct:   121 DQLMEGYPSDQDRDAIFKAYIEALNEDPKQYRIDAQKMEEWARSQTSASLVDFSSKEGDI 180

Query:   123 EGLLKDIAERASGKGNFSYSRFFAVGLFRLLELANATEPTVLEKLCAVLNVNKRSVDRDL 182
             E +LKDIA RA  K  FSYSRFFAVGLFRLLELA+AT+PTVL+KLCA LN+NK+SVDRDL
Sbjct:   181 EAVLKDIAGRAGSKEGFSYSRFFAVGLFRLLELASATDPTVLDKLCASLNINKKSVDRDL 240

Query:   183 DVYRNXXXXXXXXXXXXXEYVDXXXXXXXXXTEPQKANEAIKKCLGEYLYS 233
             DVYRN             EYV+          + QKANE I KCLG+ LY+
Sbjct:   241 DVYRNLLSKLVQAKELLKEYVEREKKKQGERAQSQKANETISKCLGDTLYN 291

GO:0003674 "molecular_function" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0010027 "thylakoid membrane organization" evidence=IEA;RCA;IMP

GO:0015979 "photosynthesis" evidence=IEA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0010319 "stromule" evidence=IDA

GO:0045037 "protein import into chloroplast stroma" evidence=IDA

GO:0045038 "protein import into chloroplast thylakoid membrane" evidence=IDA

GO:0009534 "chloroplast thylakoid" evidence=ISS;IDA

GO:0010207 "photosystem II assembly" evidence=RCA;TAS

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=IPI

GO:0009527 "plastid outer membrane" evidence=IDA

GO:0009528 "plastid inner membrane" evidence=IDA

GO:0009532 "plastid stroma" evidence=IDA

GO:0010182 "sugar mediated signaling pathway" evidence=IMP

GO:0006364 "rRNA processing" evidence=RCA

GO:0006417 "regulation of translation" evidence=RCA

GO:0006655 "phosphatidylglycerol biosynthetic process" evidence=RCA

GO:0009657 "plastid organization" evidence=RCA

GO:0009773 "photosynthetic electron transport in photosystem I" evidence=RCA

GO:0009902 "chloroplast relocation" evidence=RCA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

GO:0034660 "ncRNA metabolic process" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0042793 "transcription from plastid promoter" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

UNIPROTKB|P73956 thf1 "Protein thf1" [Synechocystis sp. PCC 6803 substr. Kazusa (taxid:1111708)]

 Score = 260 (96.6 bits), Expect = 2.1e-22, P = 2.1e-22
 Identities = 64/188 (34%), Positives = 100/188 (53%)

Query:     8 TVAETKMNFLKLYKRPIPSIYNTVLQELIVQQHLMRYKRTYQYDPVFALGFVTVYDRLME 67
             TV++ K  F   Y RPI SIY   ++EL+V+ HL+     + YDP+FALG VT ++  M+
Sbjct:     6 TVSDAKRKFFTHYSRPISSIYRRFVEELLVEMHLLSVNIDFTYDPIFALGIVTSFNSFMQ 65

Query:    68 GYPSEEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLVEFP-SKEGEVEGLL 126
             GY   E   AIF A    + ++P+Q R DA+ +   A      + V    S++   + LL
Sbjct:    66 GYQPAEQLPAIFNALCHGVDQNPDQVRQDAKNVAASAHHIGLDAWVTAAASEQASGDNLL 125

Query:   127 KDIAERASGKGNFSYSRFFAVGLFRLL-----ELANATEPT--VLEKLCAVLNVNKRSVD 179
              +       +  F YSR FA+GL+ LL     E+ +  E     L +L  +L+++   V 
Sbjct:   126 LNTLTGIHQRHKFKYSRLFAIGLYTLLADQDPEVKDNDEKRQDYLTRLSELLDLSLDKVV 185

Query:   180 RDLDVYRN 187
             +DLD+YR+
Sbjct:   186 KDLDLYRS 193


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.318   0.135   0.384    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      235       213   0.00084  112 3  11 22  0.38    33
                                                     31  0.49    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  593 (63 KB)
  Total size of DFA:  163 KB (2097 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  18.68u 0.09s 18.77t   Elapsed:  00:00:01
  Total cpu time:  18.68u 0.09s 18.77t   Elapsed:  00:00:01
  Start:  Sat May 11 00:08:46 2013   End:  Sat May 11 00:08:47 2013

GO:0030096 "plasma membrane-derived thylakoid photosystem II" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9SKT0	THF1_ARATH	No assigned EC number	0.7811	0.9872	0.7733	yes	no
B0C3M8	THF1_ACAM1	No assigned EC number	0.3703	0.8510	0.8097	yes	no
Q8YZ41	THF1_NOSS1	No assigned EC number	0.3619	0.8680	0.8755	yes	no
Q2JSQ3	THF1_SYNJA	No assigned EC number	0.3761	0.8638	0.8493	yes	no
B1WNF0	THF1_CYAA5	No assigned EC number	0.3285	0.8595	0.8347	yes	no
B8HQ62	THF1_CYAP4	No assigned EC number	0.3903	0.9106	0.9067	yes	no
Q7NKS7	THF1_GLOVI	No assigned EC number	0.3665	0.8936	0.9210	yes	no
B7KI38	THF1_CYAP7	No assigned EC number	0.3409	0.8595	0.8938	yes	no
P0C1D1	THF1_SYNJB	No assigned EC number	0.3577	0.9276	0.9121	yes	no
B7K277	THF1_CYAP8	No assigned EC number	0.3395	0.8723	0.8723	yes	no
Q5N664	THF1_SYNP6	No assigned EC number	0.3410	0.8808	0.8149	yes	no
Q3M4B2	THF1_ANAVT	No assigned EC number	0.3574	0.8680	0.8755	yes	no
B2J353	THF1_NOSP7	No assigned EC number	0.3524	0.8765	0.8765	yes	no
Q116P5	THF1_TRIEI	No assigned EC number	0.3796	0.8808	0.8661	yes	no
Q8DJT8	THF1_THEEB	No assigned EC number	0.3811	0.8808	0.9324	yes	no
Q7V7R3	THF1_PROMM	No assigned EC number	0.3177	0.8680	0.8395	yes	no
Q7XAB8	THF1_SOLTU	No assigned EC number	0.7885	0.9617	0.7713	N/A	no
Q84PB7	THF1_ORYSJ	No assigned EC number	0.8222	0.9574	0.7839	yes	no
Q31MY4	THF1_SYNE7	No assigned EC number	0.3410	0.8808	0.8149	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	235
PLN00047	283	PLN00047, PLN00047, photosystem II biogenesis prot	1e-154
PLN03060	206	PLN03060, PLN03060, inositol phosphatase-like prot	1e-110
pfam11264	216	pfam11264, ThylakoidFormat, Thylakoid formation pr	6e-89
PRK13266	225	PRK13266, PRK13266, Thf1-like protein; Reviewed	2e-59
TIGR03060	214	TIGR03060, PS_II_psb29, photosystem II biogenesis	6e-51

>gnl|CDD|177679 PLN00047, PLN00047, photosystem II biogenesis protein Psb29; Provisional

 Score =  428 bits (1102), Expect = e-154
 Identities = 190/229 (82%), Positives = 207/229 (90%)

Query: 4   DVPPTVAETKMNFLKLYKRPIPSIYNTVLQELIVQQHLMRYKRTYQYDPVFALGFVTVYD 63
           DVPPTVAETK  FLK YKRPIPSIY+TVLQEL+VQQHLMRYK+TY+YDPVFALGFVTVYD
Sbjct: 53  DVPPTVAETKAKFLKSYKRPIPSIYSTVLQELLVQQHLMRYKKTYRYDPVFALGFVTVYD 112

Query: 64  RLMEGYPSEEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLVEFPSKEGEVE 123
           +LMEGYPS+EDR+AIF+AYI AL EDPEQYR DA KLEEWAR QT SSLV+F SKEGE+E
Sbjct: 113 QLMEGYPSDEDRDAIFKAYIKALGEDPEQYRKDAAKLEEWARSQTGSSLVDFSSKEGEIE 172

Query: 124 GLLKDIAERASGKGNFSYSRFFAVGLFRLLELANATEPTVLEKLCAVLNVNKRSVDRDLD 183
           G+LKDIAERA  KG FSYSRFFA+GLFRLLELANATEPT LEKLCA LN+NKRSVDRDLD
Sbjct: 173 GILKDIAERAGSKGKFSYSRFFAIGLFRLLELANATEPTALEKLCAALNINKRSVDRDLD 232

Query: 184 VYRNLLSKLLQAKELLKEYVDREKKKREERTEPQKANEAIKKCLGEYLY 232
           VYR LLSKL+QAKELLKEYV+REKKK+EER E QKANEA+ KCLGE   
Sbjct: 233 VYRGLLSKLVQAKELLKEYVEREKKKQEERAESQKANEAVTKCLGELEQ 281

Length = 283

>gnl|CDD|215554 PLN03060, PLN03060, inositol phosphatase-like protein; Provisional

 Score =  313 bits (804), Expect = e-110
 Identities = 144/204 (70%), Positives = 172/204 (84%)

Query: 7   PTVAETKMNFLKLYKRPIPSIYNTVLQELIVQQHLMRYKRTYQYDPVFALGFVTVYDRLM 66
           PTVA+TK +FLK Y++PIPSIY+ V+QEL+VQQHLMRY  TY+YDP+FALGFVTVYD+LM
Sbjct: 3   PTVADTKASFLKAYRKPIPSIYSNVIQELLVQQHLMRYNATYKYDPIFALGFVTVYDQLM 62

Query: 67  EGYPSEEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLVEFPSKEGEVEGLL 126
           +GYP+  DR+AIF+AYI AL EDP+QYR DA+KLEEWA  Q+AS + +F S +GEVE +L
Sbjct: 63  DGYPNATDRDAIFKAYIEALGEDPDQYRKDAKKLEEWASSQSASGIADFNSGDGEVEAVL 122

Query: 127 KDIAERASGKGNFSYSRFFAVGLFRLLELANATEPTVLEKLCAVLNVNKRSVDRDLDVYR 186
           KDIAERA+GK  F YSRFFA+GLFRLLE A A++P VLEKL   LNV+KRSVDRDLDVYR
Sbjct: 123 KDIAERAAGKTKFHYSRFFAIGLFRLLECAKASDPAVLEKLSKALNVSKRSVDRDLDVYR 182

Query: 187 NLLSKLLQAKELLKEYVDREKKKR 210
           NLLSKL QAKEL+KEY+DR     
Sbjct: 183 NLLSKLAQAKELIKEYIDRSVCSV 206

Length = 206

>gnl|CDD|221050 pfam11264, ThylakoidFormat, Thylakoid formation protein

 Score =  261 bits (669), Expect = 6e-89
 Identities = 91/216 (42%), Positives = 136/216 (62%), Gaps = 8/216 (3%)

Query: 8   TVAETKMNFLKLYKRPIPSIYNTVLQELIVQQHLMRYKRTYQYDPVFALGFVTVYDRLME 67
           TV+++K  F   + RPIPS+Y  V+ EL+V+ HL+ +   ++YDP+FALG VTV+DR ME
Sbjct: 1   TVSDSKRAFHAAFPRPIPSLYRRVVDELLVELHLLSHNSDFKYDPLFALGLVTVFDRFME 60

Query: 68  GYPSEEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLVEFPS-KEGEVEGLL 126
           GY  EE ++AIF A  ++L  DPEQ R DA++LEE A+  +   ++ + S K G     L
Sbjct: 61  GYRPEEHKDAIFNALCSSLGFDPEQLRADAEQLEEAAKSHSLEEILSWLSQKGGGAPNPL 120

Query: 127 KDIAERASGKGNFSYSRFFAVGLFRLLELANA-------TEPTVLEKLCAVLNVNKRSVD 179
           +D  +  +    F YSR FA+GLF LLE A             +L++L   L ++K  V+
Sbjct: 121 QDTLQAIASNSKFHYSRLFAIGLFTLLEEAKGDLDKDEEDLRKILKELSESLGLSKERVE 180

Query: 180 RDLDVYRNLLSKLLQAKELLKEYVDREKKKREERTE 215
           +DLD+YR+ L K+ QAKEL++E ++ E++KRE R  
Sbjct: 181 KDLDLYRSNLEKMAQAKELMEETLEAERRKRERRAA 216

THF1 is localised to the outer plastid membrane and the stroma. THF1 has a role in sugar signalling. THF1 is also thought to have a role in chloroplast and leaf development. THF1 has been shown to play a crucial role in vesicle-mediated thylakoid membrane biogenesis. Length = 216

>gnl|CDD|237324 PRK13266, PRK13266, Thf1-like protein; Reviewed

 Score =  186 bits (475), Expect = 2e-59
 Identities = 89/225 (39%), Positives = 137/225 (60%), Gaps = 10/225 (4%)

Query: 4   DVPPTVAETKMNFLKLYKRPIPSIYNTVLQELIVQQHLMRYKRTYQYDPVFALGFVTVYD 63
           +   TV+++K  F   + RPI SIY  V+ EL+V+ HL+     ++YDP+FALG VTV+D
Sbjct: 2   NNRRTVSDSKRAFYAAFPRPINSIYRRVVDELLVELHLLSVNSDFKYDPLFALGLVTVFD 61

Query: 64  RLMEGYPSEEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLVEFPSK--EGE 121
           R M+GY  EE +++IF A   A+  DPEQ R DA++L E A+G++   ++ + ++   GE
Sbjct: 62  RFMQGYRPEEHKDSIFNALCQAVGFDPEQLRQDAERLLELAKGKSLKEILSWLTQKALGE 121

Query: 122 VEGLLKDIAERASGKGNFSYSRFFAVGLFRLLELANATEP-------TVLEKLCAVLNVN 174
             GLL  +   A+    F YSR FA+GL+ LLE A              L+ +   L ++
Sbjct: 122 PGGLLATLLAIANNS-KFKYSRLFAIGLYTLLEEAQPDLVKDEEKLNEALKDISEGLGLS 180

Query: 175 KRSVDRDLDVYRNLLSKLLQAKELLKEYVDREKKKREERTEPQKA 219
           K  V++DLD+YR+ L K+ QA EL++E ++ E+KKRE+R   + A
Sbjct: 181 KEKVEKDLDLYRSNLEKMEQALELIEETLEAERKKREQRQAEKAA 225

Length = 225

>gnl|CDD|213765 TIGR03060, PS_II_psb29, photosystem II biogenesis protein Psp29

 Score =  164 bits (417), Expect = 6e-51
 Identities = 78/213 (36%), Positives = 128/213 (60%), Gaps = 8/213 (3%)

Query: 5   VPPTVAETKMNFLKLYKRPIPSIYNTVLQELIVQQHLMRYKRTYQYDPVFALGFVTVYDR 64
              TV+++K  F   + R IP +Y  V+ EL+V+ HL+ ++  ++YDP+FALG VTV+DR
Sbjct: 3   ERRTVSDSKRAFHAAFPRVIPPLYRRVVDELLVELHLLSHQSDFKYDPLFALGLVTVFDR 62

Query: 65  LMEGYPSEEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLVEFPSKEGEVEG 124
            MEGY  EE  +A+F A   +   DPEQ R DA++L E A+G+    ++ + ++      
Sbjct: 63  FMEGYRPEEHLDALFDALCNSNGFDPEQLREDAKQLLEQAKGKGLDEILSWLTQANL-SN 121

Query: 125 LLKDIAERASGKGNFSYSRFFAVGLFRLLELANATEP-------TVLEKLCAVLNVNKRS 177
              D  +  +G+  F YSR FA+GL+ LLE A   +         +L++L   L ++   
Sbjct: 122 GGGDTLQGIAGRHKFKYSRLFAIGLYSLLEEAAPDKDIDEEDLNEILKELSEALGLSYDR 181

Query: 178 VDRDLDVYRNLLSKLLQAKELLKEYVDREKKKR 210
           V++DLD+Y++ L K+ QA EL++E ++ E++KR
Sbjct: 182 VEKDLDLYKSNLEKMKQALELMEETLEAERRKR 214

Psp29, originally designated sll1414 in Synechocystis 6803, is found universally in Cyanobacteria and in Arabidopsis. It was isolated and partially sequenced from purified photosystem II (PS II) in Synechocystis. While its function is unknown, mutant studies show an impairment in photosystem II biogenesis and/or stability, rather than in PS II core function [Energy metabolism, Photosynthesis]. Length = 214

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	235
PLN00047	283	photosystem II biogenesis protein Psb29; Provision	100.0
PRK13266	225	Thf1-like protein; Reviewed	100.0
PF11264	216	ThylakoidFormat: Thylakoid formation protein; Inte	100.0
PLN03060	206	inositol phosphatase-like protein; Provisional	100.0
TIGR03060	214	PS_II_psb29 photosystem II biogenesis protein Psp2	100.0
PF11264	216	ThylakoidFormat: Thylakoid formation protein; Inte	95.16
PRK13266	225	Thf1-like protein; Reviewed	94.9
TIGR03060	214	PS_II_psb29 photosystem II biogenesis protein Psp2	94.7
PLN03060	206	inositol phosphatase-like protein; Provisional	93.46
PLN00047	283	photosystem II biogenesis protein Psb29; Provision	91.12

>PLN00047 photosystem II biogenesis protein Psb29; Provisional

Probab=100.00  E-value=3.8e-100  Score=688.46  Aligned_cols=232  Identities=82%  Similarity=1.242  Sum_probs=227.8

Q ss_pred             CCCCCchhHhHHHHHhhCCCcCCcchhHHHHHHHHHHhhhcccCccccccchhhhHHHHHHHHhcCCCCchhHHHHHHHH
Q 026654            3 SDVPPTVAETKMNFLKLYKRPIPSIYNTVLQELIVQQHLMRYKRTYQYDPVFALGFVTVYDRLMEGYPSEEDREAIFQAY   82 (235)
Q Consensus         3 ~~~~~TVSDTKr~F~~~~~~pI~siYrrvv~ELLVe~HLl~~n~~F~yD~lfAlG~vt~fd~fm~GY~pe~~~~~IF~Al   82 (235)
                      ++++||||||||+||++|||||||||||||||||||||||+||++|+|||||||||||+||+||+||||++|+++||+||
T Consensus        52 ~~~~~TVSDTKr~F~~~yp~pIpsiYrrvvdELLVElHLLs~n~~F~yDplFALGlVtvfd~fm~GY~Pee~~~~IF~Al  131 (283)
T PLN00047         52 TDVPPTVAETKAKFLKSYKRPIPSIYSTVLQELLVQQHLMRYKKTYRYDPVFALGFVTVYDQLMEGYPSDEDRDAIFKAY  131 (283)
T ss_pred             cCCCCcHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHhccCceeCchhhhhhHHHHHHHHccCCChHHHHHHHHHH
Confidence            68899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhcCCCHHHHHHHHHHHHHHHhcCCccccccccCCcchhHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHhhcCCCCHH
Q 026654           83 ITALKEDPEQYRIDAQKLEEWARGQTASSLVEFPSKEGEVEGLLKDIAERASGKGNFSYSRFFAVGLFRLLELANATEPT  162 (235)
Q Consensus        83 c~a~~~Dp~q~r~dA~~l~~~A~~~s~~~l~~~~~~~g~~~~~l~~Ia~~~~~~~~f~YSRlfAIGLf~LLE~~~~~d~~  162 (235)
                      |+|+|+||++||+||++|++||+|+|.+++.+|+...|+++++|++||+++++|++||||||||||||+|||.++++||+
T Consensus       132 c~a~g~Dp~qyr~dA~~l~~~A~~~s~~~l~~~l~~~~~l~~~l~~IA~~a~~~~~f~YSRlfAIGLf~LLe~a~~~d~~  211 (283)
T PLN00047        132 IKALGEDPEQYRKDAAKLEEWARSQTGSSLVDFSSKEGEIEGILKDIAERAGSKGKFSYSRFFAIGLFRLLELANATEPT  211 (283)
T ss_pred             HHHcCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHhcchHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCCCCHH
Confidence            99999999999999999999999999999999999999999999999988778999999999999999999999999999


Q ss_pred             HHHHHHHhcCCChhhhHhhHHHHHhhHHHHHHHHHHHHHHHHHHhhhHHhhccchhhhHHHHHhhhhccccC
Q 026654          163 VLEKLCAVLNVNKRSVDRDLDVYRNLLSKLLQAKELLKEYVDREKKKREERTEPQKANEAIKKCLGEYLYSH  234 (235)
Q Consensus       163 ~l~~l~~~Lgls~~kv~kDL~lYrs~LeKm~QA~el~eE~~~~ekKKre~r~~~~~~~~~~~~~~~~~~~~~  234 (235)
                      .+++||++|||++++|+|||+|||||||||+||+|||||++++|||||++|+++||+|+++|+|+|++++.+
T Consensus       212 ~l~~l~e~Lgls~~kv~KDLdlYrsnLeKm~QA~elmeE~~~~EkKKre~r~~~~~~~~~~~~~~~~~~~~~  283 (283)
T PLN00047        212 ALEKLCAALNINKRSVDRDLDVYRGLLSKLVQAKELLKEYVEREKKKQEERAESQKANEAVTKCLGELEQAG  283 (283)
T ss_pred             HHHHHHHHcCCCHHHHHhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHhcccchhccC
Confidence            999999999999999999999999999999999999999999999999999999999999999999998764

>PRK13266 Thf1-like protein; Reviewed

Probab=100.00  E-value=1.6e-95  Score=642.85  Aligned_cols=215  Identities=40%  Similarity=0.717  Sum_probs=201.8

Q ss_pred             CCCCCchhHhHHHHHhhCCCcCCcchhHHHHHHHHHHhhhcccCccccccchhhhHHHHHHHHhcCCCCchhHHHHHHHH
Q 026654            3 SDVPPTVAETKMNFLKLYKRPIPSIYNTVLQELIVQQHLMRYKRTYQYDPVFALGFVTVYDRLMEGYPSEEDREAIFQAY   82 (235)
Q Consensus         3 ~~~~~TVSDTKr~F~~~~~~pI~siYrrvv~ELLVe~HLl~~n~~F~yD~lfAlG~vt~fd~fm~GY~pe~~~~~IF~Al   82 (235)
                      |+++||||||||+||++|||||||||||||||||||||||+||++|+|||||||||||+||+||+||||++|+++||+||
T Consensus         1 m~~~~TVSDtKr~F~~~~p~pI~siYrrvv~ELLVElHLl~~n~~F~yDplfAlGlvt~fd~fm~GY~Pee~~~~IF~Al   80 (225)
T PRK13266          1 MNNRRTVSDSKRAFYAAFPRPINSIYRRVVDELLVELHLLSVNSDFKYDPLFALGLVTVFDRFMQGYRPEEHKDSIFNAL   80 (225)
T ss_pred             CCCCCcHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHhccCceeCchHHhhHHHHHHHHHcCCCChHHHHHHHHHH
Confidence            78999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhcCCCHHHHHHHHHHHHHHHhcCCccccccccCCc--chhHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHhhcCC--
Q 026654           83 ITALKEDPEQYRIDAQKLEEWARGQTASSLVEFPSKE--GEVEGLLKDIAERASGKGNFSYSRFFAVGLFRLLELANA--  158 (235)
Q Consensus        83 c~a~~~Dp~q~r~dA~~l~~~A~~~s~~~l~~~~~~~--g~~~~~l~~Ia~~~~~~~~f~YSRlfAIGLf~LLE~~~~--  158 (235)
                      |+|+|+||++||+||++|++||+|+|.++|.+|+...  |+++.+++.+. .+++|++||||||||||||+|||.+++  
T Consensus        81 c~a~~~dp~~~r~dA~~l~~~a~~~s~~~i~~~l~~~~~~~~~~l~~~l~-~ia~~~~f~YSRl~AIGL~~LLe~a~~~~  159 (225)
T PRK13266         81 CQAVGFDPEQLRQDAERLLELAKGKSLKEILSWLTQKALGEPGGLLATLL-AIANNSKFKYSRLFAIGLYTLLEEAQPDL  159 (225)
T ss_pred             HHHcCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHhccccccchhHHHHHH-HHhcCCCCchHHHHHHHHHHHHHhcCccc
Confidence            9999999999999999999999999999999999764  45555555555 455699999999999999999999987  


Q ss_pred             -CCH----HHHHHHHHhcCCChhhhHhhHHHHHhhHHHHHHHHHHHHHHHHHHhhhHHhhccchh
Q 026654          159 -TEP----TVLEKLCAVLNVNKRSVDRDLDVYRNLLSKLLQAKELLKEYVDREKKKREERTEPQK  218 (235)
Q Consensus       159 -~d~----~~l~~l~~~Lgls~~kv~kDL~lYrs~LeKm~QA~el~eE~~~~ekKKre~r~~~~~  218 (235)
                       +||    +.+++||++||||.+||+|||+|||||||||+||+|||+|++++|||||++|+++++
T Consensus       160 ~~d~~~~~~~l~~l~~~L~ls~~kv~KDL~lYrsnLeKm~Qa~el~ee~~~~erkKre~r~~~~~  224 (225)
T PRK13266        160 VKDEEKLNEALKDISEGLGLSKEKVEKDLDLYRSNLEKMEQALELIEETLEAERKKREQRQAEKA  224 (225)
T ss_pred             ccCHHHHHHHHHHHHHHcCCCHHHHHhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence             466    579999999999999999999999999999999999999999999999999988764

>PF11264 ThylakoidFormat: Thylakoid formation protein; InterPro: IPR017499 Psp29, originally designated sll1414 (P73956 from SWISSPROT) in Synechocystis sp

Probab=100.00  E-value=1.5e-94  Score=633.69  Aligned_cols=208  Identities=52%  Similarity=0.898  Sum_probs=198.2

Q ss_pred             chhHhHHHHHhhCCCcCCcchhHHHHHHHHHHhhhcccCccccccchhhhHHHHHHHHhcCCCCchhHHHHHHHHHHhcC
Q 026654            8 TVAETKMNFLKLYKRPIPSIYNTVLQELIVQQHLMRYKRTYQYDPVFALGFVTVYDRLMEGYPSEEDREAIFQAYITALK   87 (235)
Q Consensus         8 TVSDTKr~F~~~~~~pI~siYrrvv~ELLVe~HLl~~n~~F~yD~lfAlG~vt~fd~fm~GY~pe~~~~~IF~Alc~a~~   87 (235)
                      |||||||+||++|||||||||||||||||||||||+||++|+|||||||||||+||+||+||||++|+++||+|||+|+|
T Consensus         1 TVsDtKr~F~~~~~~pI~siYrrvv~ELLVe~HLl~~n~~F~yD~lfalG~vt~fd~fm~GY~p~~~~~~If~Alc~a~~   80 (216)
T PF11264_consen    1 TVSDTKRAFYKAFPRPIPSIYRRVVDELLVELHLLSVNKDFQYDPLFALGLVTVFDRFMQGYPPEEDKDSIFNALCQALG   80 (216)
T ss_pred             ChhHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHhccCceeCchHHhhHHHHHHHHhcCCCChhHHHHHHHHHHHHcC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHHHhcCCccccccccCC-cchhHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHhhcCC-------C
Q 026654           88 EDPEQYRIDAQKLEEWARGQTASSLVEFPSK-EGEVEGLLKDIAERASGKGNFSYSRFFAVGLFRLLELANA-------T  159 (235)
Q Consensus        88 ~Dp~q~r~dA~~l~~~A~~~s~~~l~~~~~~-~g~~~~~l~~Ia~~~~~~~~f~YSRlfAIGLf~LLE~~~~-------~  159 (235)
                      +||++||+||+++++||+|+|..+|.+|++. .++.++.|++++.+|++|++||||||||||||+|||.+++       .
T Consensus        81 ~dp~~~r~dA~~l~~~a~~~s~~~l~~~l~~~~~~~~~~l~~~~~~ia~~~~f~YSRl~AIGL~~LLe~a~~~~~~~~~~  160 (216)
T PF11264_consen   81 FDPEQYRQDAEKLEEWAKGKSIEDLLSWLSQKGGEGDNPLAAILQAIASNPKFKYSRLFAIGLFRLLELAGADLVKDEEK  160 (216)
T ss_pred             CCHHHHHHHHHHHHHHHHcCCHHHHHHHHhccccccchHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhcCcccccChhh
Confidence            9999999999999999999999999999976 4456666767777777899999999999999999999988       3


Q ss_pred             CHHHHHHHHHhcCCChhhhHhhHHHHHhhHHHHHHHHHHHHHHHHHHhhhHHhhcc
Q 026654          160 EPTVLEKLCAVLNVNKRSVDRDLDVYRNLLSKLLQAKELLKEYVDREKKKREERTE  215 (235)
Q Consensus       160 d~~~l~~l~~~Lgls~~kv~kDL~lYrs~LeKm~QA~el~eE~~~~ekKKre~r~~  215 (235)
                      +++.+++||++||||.+||+|||++||||||||+||++||+|++++||||||+|++
T Consensus       161 ~~~~l~~l~~~l~ls~~kv~kDL~lYrsnLeKm~qA~el~ee~~~~ErkKre~r~~  216 (216)
T PF11264_consen  161 RPEALEKLSEALGLSKEKVEKDLDLYRSNLEKMAQAKELMEEILEAERKKREERAQ  216 (216)
T ss_pred             HHHHHHHHHHHcCCCHHHHHhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            46889999999999999999999999999999999999999999999999999964

(strain PCC 6803), is found universally in Cyanobacteria and in Arabidopsis. It was isolated and partially sequenced from purified photosystem II (PS II) in Synechocystis. While its function is unknown, mutant studies show an impairment in photosystem II biogenesis and/or stability, rather than in PS II core function.; GO: 0010027 thylakoid membrane organization, 0015979 photosynthesis, 0009523 photosystem II

>PLN03060 inositol phosphatase-like protein; Provisional

Probab=100.00  E-value=4.8e-94  Score=626.50  Aligned_cols=205  Identities=70%  Similarity=1.125  Sum_probs=200.1

Q ss_pred             CCchhHhHHHHHhhCCCcCCcchhHHHHHHHHHHhhhcccCccccccchhhhHHHHHHHHhcCCCCchhHHHHHHHHHHh
Q 026654            6 PPTVAETKMNFLKLYKRPIPSIYNTVLQELIVQQHLMRYKRTYQYDPVFALGFVTVYDRLMEGYPSEEDREAIFQAYITA   85 (235)
Q Consensus         6 ~~TVSDTKr~F~~~~~~pI~siYrrvv~ELLVe~HLl~~n~~F~yD~lfAlG~vt~fd~fm~GY~pe~~~~~IF~Alc~a   85 (235)
                      +||||||||+||++||||||||||||||||||||||||||++|+|||||||||||+||+||+||||++|+++||+|||+|
T Consensus         2 ~~TVsDtKr~F~~~~p~pI~siYrrvv~ELLVE~HLl~~n~~f~yD~lfAlGlvt~fd~fm~GY~Pee~~~~IF~Alc~a   81 (206)
T PLN03060          2 VPTVADTKASFLKAYRKPIPSIYSNVIQELLVQQHLMRYNATYKYDPIFALGFVTVYDQLMDGYPNATDRDAIFKAYIEA   81 (206)
T ss_pred             CCcHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHhccCceeCchHHhhHHHHHHHHHcCCCChHHHHHHHHHHHHH
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCHHHHHHHHHHHHHHHhcCCccccccccCCcchhHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHhhcCCCCHHHHH
Q 026654           86 LKEDPEQYRIDAQKLEEWARGQTASSLVEFPSKEGEVEGLLKDIAERASGKGNFSYSRFFAVGLFRLLELANATEPTVLE  165 (235)
Q Consensus        86 ~~~Dp~q~r~dA~~l~~~A~~~s~~~l~~~~~~~g~~~~~l~~Ia~~~~~~~~f~YSRlfAIGLf~LLE~~~~~d~~~l~  165 (235)
                      +|+||+|||+||++|++||+|+|.++|.+|++++|+....|++++.++++|++||||||||||||+|||.++++||+.++
T Consensus        82 ~~~dp~~~r~dA~~l~~~a~~~s~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~f~YSRl~AIGL~~LLe~a~~~d~~~l~  161 (206)
T PLN03060         82 LGEDPDQYRKDAKKLEEWASSQSASGIADFNSGDGEVEAVLKDIAERAAGKTKFHYSRFFAIGLFRLLECAKASDPAVLE  161 (206)
T ss_pred             cCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHhcccccchHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHcCCCCHHHHH
Confidence            99999999999999999999999999999999988878888888888888999999999999999999999989999999


Q ss_pred             HHHHhcCCChhhhHhhHHHHHhhHHHHHHHHHHHHHHHHHHhhhH
Q 026654          166 KLCAVLNVNKRSVDRDLDVYRNLLSKLLQAKELLKEYVDREKKKR  210 (235)
Q Consensus       166 ~l~~~Lgls~~kv~kDL~lYrs~LeKm~QA~el~eE~~~~ekKKr  210 (235)
                      +||++||||.+||+|||++||||||||+||+|||+|++++||||+
T Consensus       162 ~l~~~L~ls~~kv~kDL~lYrsnLeKm~qa~el~ee~~~~erkK~  206 (206)
T PLN03060        162 KLSKALNVSKRSVDRDLDVYRNLLSKLAQAKELIKEYIDRSVCSV  206 (206)
T ss_pred             HHHHHcCCCHHHHHhhHHHHHhHHHHHHHHHHHHHHHHHHHhccC
Confidence            999999999999999999999999999999999999999999984

>TIGR03060 PS_II_psb29 photosystem II biogenesis protein Psp29

Probab=100.00  E-value=4.3e-93  Score=623.46  Aligned_cols=204  Identities=40%  Similarity=0.687  Sum_probs=192.2

Q ss_pred             CCCCCchhHhHHHHHhhCCCcCCcchhHHHHHHHHHHhhhcccCccccccchhhhHHHHHHHHhcCCCCchhHHHHHHHH
Q 026654            3 SDVPPTVAETKMNFLKLYKRPIPSIYNTVLQELIVQQHLMRYKRTYQYDPVFALGFVTVYDRLMEGYPSEEDREAIFQAY   82 (235)
Q Consensus         3 ~~~~~TVSDTKr~F~~~~~~pI~siYrrvv~ELLVe~HLl~~n~~F~yD~lfAlG~vt~fd~fm~GY~pe~~~~~IF~Al   82 (235)
                      |+++||||||||+||++||||||||||||||||||||||||||++|+|||||||||||+||+||+||||++|+++||+||
T Consensus         1 M~~~~TVSDtKr~F~~~~p~pI~siYrrvv~ELLVElHLl~~n~~F~yDplfAlGlvt~fd~fm~GY~Pee~~~~IF~Al   80 (214)
T TIGR03060         1 MTERRTVSDSKRAFHAAFPRVIPPLYRRVVDELLVELHLLSHQSDFKYDPLFALGLVTVFDRFMEGYRPEEHLDALFDAL   80 (214)
T ss_pred             CCCCCcHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHhccCceeCchHHhhHHHHHHHHHcCCCChHHHHHHHHHH
Confidence            78999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhcCCCHHHHHHHHHHHHHHHhcCCccccccccCCcch--hHH-HHHHHHHHhcCCCCCcchHHHHHHHHHHHhhcCCC
Q 026654           83 ITALKEDPEQYRIDAQKLEEWARGQTASSLVEFPSKEGE--VEG-LLKDIAERASGKGNFSYSRFFAVGLFRLLELANAT  159 (235)
Q Consensus        83 c~a~~~Dp~q~r~dA~~l~~~A~~~s~~~l~~~~~~~g~--~~~-~l~~Ia~~~~~~~~f~YSRlfAIGLf~LLE~~~~~  159 (235)
                      |+|+|+||+|||+||+++++||+|+|.++|.+|+...|.  .+. +|++||    +|++||||||||||||+|||.+++.
T Consensus        81 c~a~~~dp~~~r~dA~~l~~~a~~~s~~~i~~~l~~~~~~~~~~l~l~~ia----~n~~f~YSRl~AIGL~~LLe~a~~~  156 (214)
T TIGR03060        81 CNSNGFDPEQLREDAKQLLEQAKGKGLDEILSWLTQANLSNGGGDTLQGIA----GRHKFKYSRLFAIGLYSLLEEAAPD  156 (214)
T ss_pred             HHhcCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHhccccCCcchhHHHHHh----cCCCcchHHHHHHHHHHHHHhcCcc
Confidence            999999999999999999999999999999999977542  222 566666    4999999999999999999998863


Q ss_pred             ---C----HHHHHHHHHhcCCChhhhHhhHHHHHhhHHHHHHHHHHHHHHHHHHhhhH
Q 026654          160 ---E----PTVLEKLCAVLNVNKRSVDRDLDVYRNLLSKLLQAKELLKEYVDREKKKR  210 (235)
Q Consensus       160 ---d----~~~l~~l~~~Lgls~~kv~kDL~lYrs~LeKm~QA~el~eE~~~~ekKKr  210 (235)
                         |    ++.+++||++||||.+||+|||+|||||||||+||+|||+|++++|||||
T Consensus       157 ~~~d~~~~~~~l~~l~~~L~ls~~kv~KDL~lYrsnLeKm~Qa~el~ee~~~~erkKr  214 (214)
T TIGR03060       157 KDIDEEDLNEILKELSEALGLSYDRVEKDLDLYKSNLEKMKQALELMEETLEAERRKR  214 (214)
T ss_pred             cccCHHHHHHHHHHHHHHcCCCHHHHHhhHHHHHhHHHHHHHHHHHHHHHHHHHhccC
Confidence               4    45799999999999999999999999999999999999999999999986

Psp29, originally designated sll1414 in Synechocystis 6803, is found universally in Cyanobacteria and in Arabidopsis. It was isolated and partially sequenced from purified photosystem II (PS II) in Synechocystis. While its function is unknown, mutant studies show an impairment in photosystem II biogenesis and/or stability, rather than in PS II core function.

>PF11264 ThylakoidFormat: Thylakoid formation protein; InterPro: IPR017499 Psp29, originally designated sll1414 (P73956 from SWISSPROT) in Synechocystis sp

Probab=95.16  E-value=0.03  Score=50.16  Aligned_cols=55  Identities=20%  Similarity=0.294  Sum_probs=46.6

Q ss_pred             ccCccccccchhhhHHHHHHHHhc-CCCCchhHHHHHHHHHHhcCCCHHHHHHHHH
Q 026654           44 YKRTYQYDPVFALGFVTVYDRLME-GYPSEEDREAIFQAYITALKEDPEQYRIDAQ   98 (235)
Q Consensus        44 ~n~~F~yD~lfAlG~vt~fd~fm~-GY~pe~~~~~IF~Alc~a~~~Dp~q~r~dA~   98 (235)
                      -|..|.|.-+||+|+.+..+.--- .-..++.+..+...||+++|+.++.+.+|-.
T Consensus       129 ~~~~f~YSRl~AIGL~~LLe~a~~~~~~~~~~~~~~l~~l~~~l~ls~~kv~kDL~  184 (216)
T PF11264_consen  129 SNPKFKYSRLFAIGLFRLLELAGADLVKDEEKRPEALEKLSEALGLSKEKVEKDLD  184 (216)
T ss_pred             cCCCCchHHHHHHHHHHHHHhcCcccccChhhHHHHHHHHHHHcCCCHHHHHhhHH
Confidence            478999999999999999987654 2445678888999999999999999998853

(strain PCC 6803), is found universally in Cyanobacteria and in Arabidopsis. It was isolated and partially sequenced from purified photosystem II (PS II) in Synechocystis. While its function is unknown, mutant studies show an impairment in photosystem II biogenesis and/or stability, rather than in PS II core function.; GO: 0010027 thylakoid membrane organization, 0015979 photosynthesis, 0009523 photosystem II

>PRK13266 Thf1-like protein; Reviewed

Probab=94.90  E-value=0.06  Score=48.60  Aligned_cols=56  Identities=18%  Similarity=0.316  Sum_probs=47.5

Q ss_pred             hcccCccccccchhhhHHHHHHHHhcC-CCCchhHHHHHHHHHHhcCCCHHHHHHHH
Q 026654           42 MRYKRTYQYDPVFALGFVTVYDRLMEG-YPSEEDREAIFQAYITALKEDPEQYRIDA   97 (235)
Q Consensus        42 l~~n~~F~yD~lfAlG~vt~fd~fm~G-Y~pe~~~~~IF~Alc~a~~~Dp~q~r~dA   97 (235)
                      ..-|..|.|+-+||+|+.+..+.---. ...++++..+...+|.++|+..+.+.+|-
T Consensus       132 ia~~~~f~YSRl~AIGL~~LLe~a~~~~~~d~~~~~~~l~~l~~~L~ls~~kv~KDL  188 (225)
T PRK13266        132 IANNSKFKYSRLFAIGLYTLLEEAQPDLVKDEEKLNEALKDISEGLGLSKEKVEKDL  188 (225)
T ss_pred             HhcCCCCchHHHHHHHHHHHHHhcCcccccCHHHHHHHHHHHHHHcCCCHHHHHhhH
Confidence            346899999999999999999876542 45566889999999999999999988884

>TIGR03060 PS_II_psb29 photosystem II biogenesis protein Psp29

Probab=94.70  E-value=0.046  Score=49.00  Aligned_cols=55  Identities=20%  Similarity=0.347  Sum_probs=46.5

Q ss_pred             hcccCccccccchhhhHHHHHHHHhcCC--CCchhHHHHHHHHHHhcCCCHHHHHHHH
Q 026654           42 MRYKRTYQYDPVFALGFVTVYDRLMEGY--PSEEDREAIFQAYITALKEDPEQYRIDA   97 (235)
Q Consensus        42 l~~n~~F~yD~lfAlG~vt~fd~fm~GY--~pe~~~~~IF~Alc~a~~~Dp~q~r~dA   97 (235)
                      ..-|..|.|+-+||+|+.+..+. .+|.  ..++++..+...+|.++|+..+.+.+|-
T Consensus       130 ia~n~~f~YSRl~AIGL~~LLe~-a~~~~~~d~~~~~~~l~~l~~~L~ls~~kv~KDL  186 (214)
T TIGR03060       130 IAGRHKFKYSRLFAIGLYSLLEE-AAPDKDIDEEDLNEILKELSEALGLSYDRVEKDL  186 (214)
T ss_pred             HhcCCCcchHHHHHHHHHHHHHh-cCcccccCHHHHHHHHHHHHHHcCCCHHHHHhhH
Confidence            34689999999999999999984 4443  4567788999999999999999988884

Psp29, originally designated sll1414 in Synechocystis 6803, is found universally in Cyanobacteria and in Arabidopsis. It was isolated and partially sequenced from purified photosystem II (PS II) in Synechocystis. While its function is unknown, mutant studies show an impairment in photosystem II biogenesis and/or stability, rather than in PS II core function.

>PLN03060 inositol phosphatase-like protein; Provisional

Probab=93.46  E-value=0.3  Score=43.68  Aligned_cols=47  Identities=13%  Similarity=0.387  Sum_probs=38.7

Q ss_pred             CCCCcchHHHHHHHHHHHhh-cCCC----C-HHHHHHHHHhcCCChhhhHhhH
Q 026654          136 KGNFSYSRFFAVGLFRLLEL-ANAT----E-PTVLEKLCAVLNVNKRSVDRDL  182 (235)
Q Consensus       136 ~~~f~YSRlfAIGLf~LLE~-~~~~----d-~~~l~~l~~~Lgls~~kv~kDL  182 (235)
                      |..|.|+-+||+||.+..+. ....    + ....+.+|+++|+.++.+.+|-
T Consensus        41 n~~f~yD~lfAlGlvt~fd~fm~GY~Pee~~~~IF~Alc~a~~~dp~~~r~dA   93 (206)
T PLN03060         41 NATYKYDPIFALGFVTVYDQLMDGYPNATDRDAIFKAYIEALGEDPDQYRKDA   93 (206)
T ss_pred             ccCceeCchHHhhHHHHHHHHHcCCCChHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence            89999999999999999943 3332    2 2458999999999999988886

>PLN00047 photosystem II biogenesis protein Psb29; Provisional

Probab=91.12  E-value=0.74  Score=43.00  Aligned_cols=47  Identities=15%  Similarity=0.377  Sum_probs=38.7

Q ss_pred             CCCCcchHHHHHHHHHHHhh-cCCC----C-HHHHHHHHHhcCCChhhhHhhH
Q 026654          136 KGNFSYSRFFAVGLFRLLEL-ANAT----E-PTVLEKLCAVLNVNKRSVDRDL  182 (235)
Q Consensus       136 ~~~f~YSRlfAIGLf~LLE~-~~~~----d-~~~l~~l~~~Lgls~~kv~kDL  182 (235)
                      |..|.|+-+||+||.+..+. ....    | ....+.+|+++|+.++.+.+|-
T Consensus        94 n~~F~yDplFALGlVtvfd~fm~GY~Pee~~~~IF~Alc~a~g~Dp~qyr~dA  146 (283)
T PLN00047         94 KKTYRYDPVFALGFVTVYDQLMEGYPSDEDRDAIFKAYIKALGEDPEQYRKDA  146 (283)
T ss_pred             ccCceeCchhhhhhHHHHHHHHccCCChHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence            89999999999999999943 3332    2 2458999999999999988886

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	235
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-05

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.9 bits (100), Expect = 6e-05
 Identities = 40/267 (14%), Positives = 76/267 (28%), Gaps = 67/267 (25%)

Query: 23  PIPSIYNTVLQELIVQQHLMRYKRTYQ-----YDP----VFALG---FVT-----VYDRL 65
            I    +++  EL        Y+          +      F L     +T     V D L
Sbjct: 222 NIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFL 281

Query: 66  MEGYP------------SEEDREAIFQAYITALKED-PEQYRIDAQKLEEWARGQTASSL 112
                            + ++ +++   Y+    +D P +                A S+
Sbjct: 282 SAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPRE----VLTTNPRRLSIIAESI 337

Query: 113 VEFPSKEGEVEGLLKDIAERASGKGNFSYS---------RFFAVGLFR--------LLEL 155
            +  +     + +  D           S +          F  + +F         LL L
Sbjct: 338 RDGLATWDNWKHVNCDKLTTIIES---SLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSL 394

Query: 156 --ANATE---PTVLEKLCAVLNVNKRSVDRDL---DVYRNLLSKLLQAKELLKEYVDREK 207
              +  +     V+ KL     V K+  +  +    +Y  L  KL     L +  VD   
Sbjct: 395 IWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYN 454

Query: 208 KKREERTEPQKANEAIKKCLGEYLYSH 234
             +   +     ++ I   L +Y YSH
Sbjct: 455 IPKTFDS-----DDLIPPYLDQYFYSH 476

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	235
3g80_A	97	Protein B2; RNA-binding, viral protein, suppressor	82.08

>3g80_A Protein B2; RNA-binding, viral protein, suppressor of RNAI, RNA interference; 2.50A {Nodamura virus}

Probab=82.08  E-value=1.8  Score=33.22  Aligned_cols=28  Identities=21%  Similarity=0.353  Sum_probs=24.7

Q ss_pred             HhcCCChhhhHhhHHHHHhhHHHHHHHH
Q 026654          169 AVLNVNKRSVDRDLDVYRNLLSKLLQAK  196 (235)
Q Consensus       169 ~~Lgls~~kv~kDL~lYrs~LeKm~QA~  196 (235)
                      .+|....++|.|||+-|+.-|.|+.|-.
T Consensus        49 ~sl~~qDpnV~kDLdn~~acL~k~~~t~   76 (97)
T 3g80_A           49 QTLMIADPNVNKDLRAFCEFLTVQHQRA   76 (97)
T ss_dssp             HTCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhccccCchHHHHHHHHHHHHHHHHHHH
Confidence            5677889999999999999999998743

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00