Citrus Sinensis ID: 026674

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-----
Protein Sequence
MFKFWGSNEQQAQPRPQDVTSQSWYPPSVVSPDSSRPATPSMSSFGSLNLQRPTEQSQPLSHVSPAEAAGIIALLKDKSVDELRKLLADKDAYRQFLLSIDQVKIQNNIRDELHRETLQIARDNLDKELRMIELRNQSKIIRTTELAAAQEKLHDLERQKEQLLKLYSPASLLKRIQEAMNKTEEESENLHRQLLDRELDIGAFVQKYKKLRTTYHRRALVHLSAKTHSVDAGKA
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHcccHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHcccHHHHHHHHHcHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccc
Coil and Loop (DISEMBL)
mfkfwgsneqqaqprpqdvtsqswyppsvvspdssrpatpsmssfgslnlqrpteqsqplshvspAEAAGIIALLKDKSVDELRKLLADKDAYRQFLLSIDQVKIQNNIRDELHRETLQIARDNLDKELRMIELRNQSKIIRTTELAAAQEKLHDLERQKEQLLKLYSPASLLKRIQEAMNKTEEESENLHRQLLDRELDIGAFVQKYKKLRTTYHRRALVHLSAkthsvdagka
Flexible Loop (DISEMBL)
mfkfwgsneqqaqprpqdvtsqswYPPSVVSPDSSRPATPSMSSFGSLNLQRPTEQSQPLSHVSPAEAAGIIALLKDKSVDELRKLLADKDAYRQFLLSIDQVKIQNNIRDELHRETLQIARDNLDKELRMIELrnqskiirtTELAAAQEKLHDLERQKEQLLKLYSPASLLKRIQEAMNKTEEESENLHRQLLDRELDIGAFVQKYKKLRTTYHRRAlvhlsakthsvdagka
Low Complexity Region (SEG)
MFKFWGSNEQQAQPRPQDVTSQSWYppsvvspdssrpATPSMSSFGSLNLQRPTEQSQPLSHVSPAEAAGIIALLKDKSVDELRKLLADKDAYRQFLLSIDQVKIQNNIRDELHRETLQIARDNLDKELRMIELRNQSKIIRTTELAAAQEKLHDLERQKEQLLKLYSPASLLKRIQEAMNKTEEESENLHRQLLDRELDIGAFVQKYKKLRTTYHRRALVHLSAKTHSVDAGKA
Disordered region (IsUnstruct)
********************************************************************AGIIALLKDKSVDELRKLLADKDAYRQFLLSIDQVKIQNNIRDELHRETLQIARDNLDKELRMIELRNQSKIIRTTEL***********************************************LLDRELDIGAFVQKYKKLRTTYHRRALVHL************
Disordered Region (DISOPRED)
******************************************************************************SVDELRKLLADKDAYRQFLLSIDQVKIQNNI*DELHRETLQIAR*********************TELAA***********************LLKRIQEAMNKTEEESENLHRQLLDRELDIGAFVQKYKKLRTTYHRRALVHLS***********
Disordered Region (DISEMBL)
******************************************SSFG*****************SPAEAAGIIALLKDKSVDELRKLLADKDAYRQFLLSIDQVKIQNNIRDELHRETLQIARDNLDKELRMIELRNQSKIIRTTELAAAQEKLHDLERQKEQLLKLYSPASLLKRIQEAM**********HRQLLDRELDIGAFVQKYKKLRTTYHRRALVHLSA**********
Disordered Region (DISPRO)
***************************************************************SPAEAAGIIALLKDKSVDELRKLLADKDAYRQFLLSIDQVKIQNNIRDELHRETLQIARDNLDKELRMIELRNQSKIIRTTELAAAQEKLHDLERQKEQLLKLYSPASLLKRIQEAMNKTEEESENLHRQLLDRELDIGAFVQKYKKLRTTYHRRALVHLSAKT********
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MFKFWGSNEQQAQPRPQDVTSQSWYPPSVVSPDSSRPATPSMSSFGSLNLQRPTEQSQPLSHVSPAEAAGIIALLKDKSVDELRKLLADKDAYRQFLLSIDQVKIQNNIRDELHxxxxxxxxxxxxxxxxxxxxxNQSKIIRTTExxxxxxxxxxxxxxxxxxxxxYSPASLxxxxxxxxxxxxxxxxxxxxxLLDRELDIGAFVQKYKKLRTTYHRRALVHLSAKTHSVDAGKA
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	235	2.2.26 [Sep-21-2011]
Q3EBL9	218	Vacuolar protein-sorting-	yes	no	0.910	0.981	0.605	2e-74
Q9SCP9	217	Vacuolar protein-sorting-	no	no	0.914	0.990	0.633	2e-74
A5D8V6	355	Vacuolar protein sorting-	yes	no	0.574	0.380	0.296	6e-05
Q5R9T2	355	Vacuolar protein sorting-	yes	no	0.574	0.380	0.289	0.0002
Q8R105	352	Vacuolar protein sorting-	yes	no	0.582	0.389	0.28	0.0003
Q8NEZ2	397	Vacuolar protein sorting-	no	no	0.765	0.453	0.260	0.0003

>sp|Q3EBL9|VP372_ARATH Vacuolar protein-sorting-associated protein 37 homolog 2 OS=Arabidopsis thaliana GN=VPS37-2 PE=1 SV=1

 Score =  278 bits (712), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 141/233 (60%), Positives = 179/233 (76%), Gaps = 19/233 (8%)

Query: 1   MFKFWGSNEQQ-AQPRPQ-DVTSQSWYPPSVV-SPDSSRPATPSMSSFGSLNLQRPTEQS 57
           MF FWGS EQQ  Q RP  + ++  WY PS+V SP SSRP T                  
Sbjct: 1   MFNFWGSKEQQQGQSRPSPEASATPWYSPSLVTSPSSSRPQT----------------SG 44

Query: 58  QPLSHVSPAEAAGIIALLKDKSVDELRKLLADKDAYRQFLLSIDQVKIQNNIRDELHRET 117
           Q  SHVSP EAAGIIA+LKDKSVDELRKLL+DKDAY+QFL S+DQV IQNNIR+EL +ET
Sbjct: 45  QIPSHVSPGEAAGIIAILKDKSVDELRKLLSDKDAYQQFLHSLDQVTIQNNIREELRKET 104

Query: 118 LQIARDNLDKELRMIELRNQSKIIRTTELAAAQEKLHDLERQKEQLLKLYSPASLLKRIQ 177
           L +AR+NL+KE +++ELRNQ +IIRT+ELA AQEKL++LE Q+E++LK YSP SLL R+Q
Sbjct: 105 LHLARENLEKEPQIVELRNQCRIIRTSELATAQEKLNELENQREEILKFYSPGSLLHRLQ 164

Query: 178 EAMNKTEEESENLHRQLLDRELDIGAFVQKYKKLRTTYHRRALVHLSAKTHSV 230
           +AMN+ +EESE L ++ +++++D  AFVQKYKKLR+ YHRRAL+HL+AKT S+
Sbjct: 165 DAMNQVDEESEELQQKFMEKDIDTAAFVQKYKKLRSKYHRRALIHLAAKTSSI 217

Component of the ESCRT-I complex (endosomal sorting complex required for transport I), a regulator of vesicular trafficking process. Required for the sorting of endocytic ubiquitinated cargos into multivesicular bodies (MVBs).
Arabidopsis thaliana (taxid: 3702)

>sp|Q9SCP9|VP371_ARATH Vacuolar protein-sorting-associated protein 37 homolog 1 OS=Arabidopsis thaliana GN=VPS37-1 PE=1 SV=1

 Score =  278 bits (712), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 147/232 (63%), Positives = 183/232 (78%), Gaps = 17/232 (7%)

Query: 1   MFKFWGS-NEQQAQPRPQDVTSQS-WYPPSVVSPDSSRPATPSMSSFGSLNLQRPTEQSQ 58
           MF FWGS ++QQ Q RPQ+ +SQS WY PS+     S P++    S G ++ Q       
Sbjct: 1   MFNFWGSKDQQQGQSRPQEASSQSPWYSPSL----VSSPSSSRPQSSGQISAQ------- 49

Query: 59  PLSHVSPAEAAGIIALLKDKSVDELRKLLADKDAYRQFLLSIDQVKIQNNIRDELHRETL 118
               VSP EAAGII  LKDKSVDELRKLL+DKDAY+QFLLS+DQVK+QNNI+DEL RETL
Sbjct: 50  ----VSPGEAAGIIVFLKDKSVDELRKLLSDKDAYQQFLLSLDQVKVQNNIKDELRRETL 105

Query: 119 QIARDNLDKELRMIELRNQSKIIRTTELAAAQEKLHDLERQKEQLLKLYSPASLLKRIQE 178
           Q+ARDNL+KE +++ELRNQ +IIRTTELA AQEKL++LERQKE++LK YSP SLL ++QE
Sbjct: 106 QLARDNLEKEPQIMELRNQCRIIRTTELATAQEKLNELERQKEEILKFYSPGSLLHKLQE 165

Query: 179 AMNKTEEESENLHRQLLDRELDIGAFVQKYKKLRTTYHRRALVHLSAKTHSV 230
           AMN+ +EESE L  + L++E+D  AFVQKYKKLRTTYHRRAL+HL+AKT ++
Sbjct: 166 AMNQVDEESEALQEKFLEKEIDTAAFVQKYKKLRTTYHRRALIHLAAKTSNI 217

Component of the ESCRT-I complex (endosomal sorting complex required for transport I), a regulator of vesicular trafficking process. Required for the sorting of endocytic ubiquitinated cargos into multivesicular bodies (MVBs).

Arabidopsis thaliana (taxid: 3702)

>sp|A5D8V6|VP37C_HUMAN Vacuolar protein sorting-associated protein 37C OS=Homo sapiens GN=VPS37C PE=1 SV=2

 Score = 47.8 bits (112), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 45/152 (29%), Positives = 75/152 (49%), Gaps = 17/152 (11%)

Query: 75  LKDKSVDELRKLLADKDAYRQFLLSIDQVKIQN-NIRD-ELHRETLQIARDNLDKELRMI 132
           LKDK++ EL +L  D +A       IDQ+ +++  ++D +L RE       +L +  R +
Sbjct: 4   LKDKTLQELEELQNDSEA-------IDQLALESPEVQDLQLEREMALATNRSLAE--RNL 54

Query: 133 ELRNQSKIIRTTELAAAQEKLHDLERQKEQLLKL------YSPASLLKRIQEAMNKTEEE 186
           E +   +I R+      QE    +ER +EQ  KL        P +LL  +Q    K EEE
Sbjct: 55  EFQGPLEISRSNLSDRYQELRKLVERCQEQKAKLEKFSSALQPGTLLDLLQVEGMKIEEE 114

Query: 187 SENLHRQLLDRELDIGAFVQKYKKLRTTYHRR 218
           SE +  + L+ E+ +  F++ +  +R   H R
Sbjct: 115 SEAMAEKFLEGEVPLETFLENFSSMRMLSHLR 146

Component of the ESCRT-I complex, a regulator of vesicular trafficking process. Required for the sorting of endocytic ubiquitinated cargos into multivesicular bodies. May be involved in cell growth and differentiation.

Homo sapiens (taxid: 9606)

>sp|Q5R9T2|VP37C_PONAB Vacuolar protein sorting-associated protein 37C OS=Pongo abelii GN=VPS37C PE=2 SV=1

 Score = 46.6 bits (109), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 44/152 (28%), Positives = 74/152 (48%), Gaps = 17/152 (11%)

Query: 75  LKDKSVDELRKLLADKDAYRQFLLSIDQVKIQN-NIRD-ELHRETLQIARDNLDKELRMI 132
           LKDK++ EL +L  D +A       IDQ+ +++  ++D +L RE       +L +  R +
Sbjct: 4   LKDKTLQELEELQNDSEA-------IDQLALESPEVQDLQLEREMALATNRSLAE--RNL 54

Query: 133 ELRNQSKIIRTTELAAAQEKLHDLERQKEQLLKL------YSPASLLKRIQEAMNKTEEE 186
           E +   +I R+      QE    +ER +EQ  KL        P +LL  +Q    K E E
Sbjct: 55  EFQGPLEISRSNLSDKYQELRKLVERCQEQKAKLEKFSSALQPGTLLDLLQVEGMKIEGE 114

Query: 187 SENLHRQLLDRELDIGAFVQKYKKLRTTYHRR 218
           SE +  + L+ E+ +  F++ +  +R   H R
Sbjct: 115 SEAMAEKFLEGEVPLETFLENFSSMRMLSHLR 146

Component of the ESCRT-I complex, a regulator of vesicular trafficking process. Required for the sorting of endocytic ubiquitinated cargos into multivesicular bodies. May be involved in cell growth and differentiation.

Pongo abelii (taxid: 9601)

>sp|Q8R105|VP37C_MOUSE Vacuolar protein sorting-associated protein 37C OS=Mus musculus GN=Vps37c PE=2 SV=1

 Score = 45.8 bits (107), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 42/150 (28%), Positives = 75/150 (50%), Gaps = 13/150 (8%)

Query: 75  LKDKSVDELRKLLADKDAYRQFLLSIDQVKIQNNIRDELHRETLQIARDNLDKELRMIEL 134
           LKDK++ EL ++  D +A  +  L+++  ++Q+    +L RE       +L ++   +E 
Sbjct: 4   LKDKTLQELEEMQNDPEAIAR--LALESPEVQDL---QLEREMALATNRSLAEQ--NLEF 56

Query: 135 RNQSKIIRTTELAAAQEKLHDLERQKEQLLKL------YSPASLLKRIQEAMNKTEEESE 188
           +   +I R+      QE    +ER +EQ  KL        P +LL  +Q    K EEESE
Sbjct: 57  QGPLEISRSNLSDKYQELRKLVERCQEQKAKLEKFSSALQPGTLLDLLQIEGMKIEEESE 116

Query: 189 NLHRQLLDRELDIGAFVQKYKKLRTTYHRR 218
            +  + L+ E+ +  F++ +  +RT  H R
Sbjct: 117 AMAEKFLEGEVPLETFLESFSSMRTLLHLR 146

Component of the ESCRT-I complex, a regulator of vesicular trafficking process. Required for the sorting of endocytic ubiquitinated cargos into multivesicular bodies. May be involved in cell growth and differentiation.

Mus musculus (taxid: 10090)

>sp|Q8NEZ2|VP37A_HUMAN Vacuolar protein sorting-associated protein 37A OS=Homo sapiens GN=VPS37A PE=1 SV=1

 Score = 45.4 bits (106), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 50/192 (26%), Positives = 95/192 (49%), Gaps = 12/192 (6%)

Query: 35  SRPATPSMSSFGSLNLQRPT-EQSQPLSH----VSPAEAAGIIALLKDKSVDELRKLLAD 89
           ++PA PS     +L L  PT + S P S         +       L + SV +L  +   
Sbjct: 189 AKPAAPSFGVLSNLPLPIPTVDASIPTSQNGFGYKMPDVPDAFPELSELSVSQLTDMNEQ 248

Query: 90  KDAYRQFLLSIDQVKIQNNIRDELHRETLQIARDNLDKELRMIELRNQSKIIRT---TEL 146
           ++   +  L++ Q+K     +D+L +   ++AR NL  E  + E + Q+ + +    T++
Sbjct: 249 EEVLLEQFLTLPQLKQIITDKDDLVKSIEELARKNLLLEPSL-EAKRQTVLDKYELLTQM 307

Query: 147 AAAQEKLHDLERQKEQLLKLYSPASLLKRIQEAMNKTEEESENLHRQLLDRELDIGAFVQ 206
            +  EK   ++RQ E L +  S ++L  R++ A ++ EEES+N+    L+ +++I  F+ 
Sbjct: 308 KSTFEK--KMQRQHE-LSESCSASALQARLKVAAHEAEEESDNIAEDFLEGKMEIDDFLS 364

Query: 207 KYKKLRTTYHRR 218
            + + RT  H R
Sbjct: 365 SFMEKRTICHCR 376

Component of the ESCRT-I complex, a regulator of vesicular trafficking process. Required for the sorting of endocytic ubiquitinated cargos into multivesicular bodies. May be involved in cell growth and differentiation.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	235
224140241	230	predicted protein [Populus trichocarpa]	0.948	0.969	0.745	1e-82
449440163	224	PREDICTED: vacuolar protein-sorting-asso	0.948	0.995	0.665	6e-81
255556802	229	conserved hypothetical protein [Ricinus	0.961	0.986	0.715	8e-79
225441098	233	PREDICTED: vacuolar protein-sorting-asso	0.978	0.987	0.728	9e-79
297820038	217	hypothetical protein ARALYDRAFT_906697 [	0.914	0.990	0.650	5e-73
42570370	218	vacuolar protein-sorting-associated prot	0.910	0.981	0.605	9e-73
15231750	217	vacuolar protein-sorting-associated prot	0.914	0.990	0.633	1e-72
224068893	233	predicted protein [Populus trichocarpa]	0.953	0.961	0.706	4e-70
388516893	223	unknown [Lotus japonicus]	0.936	0.986	0.652	1e-69
297827155	215	predicted protein [Arabidopsis lyrata su	0.910	0.995	0.582	2e-68

>gi|224140241|ref|XP_002323492.1| predicted protein [Populus trichocarpa] gi|222868122|gb|EEF05253.1| predicted protein [Populus trichocarpa]

 Score =  311 bits (798), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 170/228 (74%), Positives = 201/228 (88%), Gaps = 5/228 (2%)

Query: 1   MFKFWGSNEQQAQPRPQDVT-SQSWYPPSVVSPDSS-RPATPSMSSFGSLNLQRPTEQSQ 58
           MFKFWG+ EQQ Q RPQDV  +QSWYPPSVV+  SS RPATP+ SS  S +LQRPTE+  
Sbjct: 1   MFKFWGNQEQQEQARPQDVNPAQSWYPPSVVTSPSSSRPATPTSSSSSSHSLQRPTER-- 58

Query: 59  PLSHVSPAEAAGIIALLKDKSVDELRKLLADKDAYRQFLLSIDQVKIQNNIRDELHRETL 118
           PLS  SPAEAA II LLKDKSVDELRKLL+DKDAY QFLLS+DQVKIQNNIRDEL +ETL
Sbjct: 59  PLS-PSPAEAAAIITLLKDKSVDELRKLLSDKDAYHQFLLSLDQVKIQNNIRDELCKETL 117

Query: 119 QIARDNLDKELRMIELRNQSKIIRTTELAAAQEKLHDLERQKEQLLKLYSPASLLKRIQE 178
           Q+AR+NL+KE R++ELRNQ +IIRTTELAAAQEKL++LE+QKE+LL+  SPAS+L+R+QE
Sbjct: 118 QLARENLEKEPRIMELRNQCRIIRTTELAAAQEKLNELEKQKEELLRSCSPASILQRLQE 177

Query: 179 AMNKTEEESENLHRQLLDRELDIGAFVQKYKKLRTTYHRRALVHLSAK 226
           AMNKTEEES+  HRQ L++E+D+GAFVQKYKKLRTTYH+RAL+HL+AK
Sbjct: 178 AMNKTEEESDAFHRQFLEKEMDLGAFVQKYKKLRTTYHKRALIHLAAK 225

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449440163|ref|XP_004137854.1| PREDICTED: vacuolar protein-sorting-associated protein 37 homolog 2-like [Cucumis sativus] gi|449501015|ref|XP_004161255.1| PREDICTED: vacuolar protein-sorting-associated protein 37 homolog 2-like [Cucumis sativus]

 Score =  306 bits (783), Expect = 6e-81,   Method: Compositional matrix adjust.
 Identities = 151/227 (66%), Positives = 191/227 (84%), Gaps = 4/227 (1%)

Query: 1   MFKFWGSNEQQAQPRPQDVTSQSWYPPSVVSPDSSRPATPSMSSFGSLNLQRPTEQSQPL 60
           MFKFWGS E+Q +P P DV++QSWYPPSV    SSRP TP  +S    + QR +++ Q  
Sbjct: 1   MFKFWGSQEEQVRP-PPDVSTQSWYPPSV---SSSRPGTPGSTSSNHSSSQRLSDRPQSP 56

Query: 61  SHVSPAEAAGIIALLKDKSVDELRKLLADKDAYRQFLLSIDQVKIQNNIRDELHRETLQI 120
           SHVSPAEAAGII+ LKDKSVDELRKLL+DKD Y QF LS+DQVKIQNN+RDEL +ETLQ+
Sbjct: 57  SHVSPAEAAGIISALKDKSVDELRKLLSDKDTYNQFFLSLDQVKIQNNLRDELRKETLQL 116

Query: 121 ARDNLDKELRMIELRNQSKIIRTTELAAAQEKLHDLERQKEQLLKLYSPASLLKRIQEAM 180
           A +NL+KE R++ELRNQ  IIRTTELAAA+EKL++L+++KE++LKL SPASLL+R+QE+M
Sbjct: 117 ASENLEKEPRIMELRNQCSIIRTTELAAAKEKLNELDQKKEEILKLCSPASLLRRLQESM 176

Query: 181 NKTEEESENLHRQLLDRELDIGAFVQKYKKLRTTYHRRALVHLSAKT 227
            +TEEES+NLHRQLLDRE+D+ +F  KYKKLR +YH+RAL+ L+A+T
Sbjct: 177 KETEEESDNLHRQLLDREIDLSSFTHKYKKLRISYHQRALIQLAART 223

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255556802|ref|XP_002519434.1| conserved hypothetical protein [Ricinus communis] gi|223541297|gb|EEF42848.1| conserved hypothetical protein [Ricinus communis]

 Score =  299 bits (765), Expect = 8e-79,   Method: Compositional matrix adjust.
 Identities = 166/232 (71%), Positives = 193/232 (83%), Gaps = 6/232 (2%)

Query: 1   MFKFWGSNEQQAQPRPQDVTS-QSWYPPSVVSPDSSRPATPSMSSFGS-LNLQRPTEQSQ 58
           MFKFWGS EQQ QPRPQDV + QSWYP SVVS  +S   T   SS  S   LQRP    Q
Sbjct: 1   MFKFWGSQEQQGQPRPQDVPAPQSWYPSSVVSSPNSSRPTTPSSSSSSSYGLQRP----Q 56

Query: 59  PLSHVSPAEAAGIIALLKDKSVDELRKLLADKDAYRQFLLSIDQVKIQNNIRDELHRETL 118
             SHVSPAEAAG+IALLKDKSVDELRKLL+DKDAY QFLLS+DQVKIQNNIRDEL +ETL
Sbjct: 57  SPSHVSPAEAAGVIALLKDKSVDELRKLLSDKDAYHQFLLSLDQVKIQNNIRDELRKETL 116

Query: 119 QIARDNLDKELRMIELRNQSKIIRTTELAAAQEKLHDLERQKEQLLKLYSPASLLKRIQE 178
           Q+ARDNL+KE ++ ELRNQ +IIRTTELA AQEKL++LE+QKE++L+  SPASLL+R+QE
Sbjct: 117 QLARDNLEKEPQINELRNQCRIIRTTELATAQEKLNELEKQKEEMLRSCSPASLLQRLQE 176

Query: 179 AMNKTEEESENLHRQLLDRELDIGAFVQKYKKLRTTYHRRALVHLSAKTHSV 230
           A+NKT+EESE LH+QLLDRE+++ AFVQKYKKLR TYHRR L+HL+ KT S 
Sbjct: 177 AINKTDEESEILHKQLLDREIELLAFVQKYKKLRATYHRRTLIHLAGKTSST 228

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225441098|ref|XP_002263868.1| PREDICTED: vacuolar protein-sorting-associated protein 37 homolog 2 [Vitis vinifera] gi|297740010|emb|CBI30192.3| unnamed protein product [Vitis vinifera]

 Score =  298 bits (764), Expect = 9e-79,   Method: Compositional matrix adjust.
 Identities = 169/232 (72%), Positives = 198/232 (85%), Gaps = 2/232 (0%)

Query: 1   MFK-FWGSNEQQAQPRPQDVTSQSWYPPSVVSPDSSRPATPSMSSFGSLN-LQRPTEQSQ 58
           MFK FWGS EQQ QPRPQD++ QSWYPPSVV+  SS   +   SS  S   LQRP+++ Q
Sbjct: 1   MFKSFWGSQEQQPQPRPQDISGQSWYPPSVVTSPSSSRPSTPSSSTSSSFSLQRPSDRPQ 60

Query: 59  PLSHVSPAEAAGIIALLKDKSVDELRKLLADKDAYRQFLLSIDQVKIQNNIRDELHRETL 118
             SHVSPAEAAG+I LLKDKS+DELRKLL+DKDAY Q LLS+DQVKIQNN+RDEL +ETL
Sbjct: 61  SPSHVSPAEAAGMIVLLKDKSIDELRKLLSDKDAYNQLLLSLDQVKIQNNLRDELRKETL 120

Query: 119 QIARDNLDKELRMIELRNQSKIIRTTELAAAQEKLHDLERQKEQLLKLYSPASLLKRIQE 178
           Q+AR+NL+KE +++ELRNQ +IIRTTELAAAQEKL++LERQKE++LK YSPA LL R+QE
Sbjct: 121 QLARENLEKEPQIVELRNQCRIIRTTELAAAQEKLNELERQKEEILKFYSPACLLHRLQE 180

Query: 179 AMNKTEEESENLHRQLLDRELDIGAFVQKYKKLRTTYHRRALVHLSAKTHSV 230
            MNKTEEESE LHRQLLDRE+D+GAFVQKYK+LRTTYHRRAL HL+AKT S 
Sbjct: 181 TMNKTEEESETLHRQLLDREMDLGAFVQKYKRLRTTYHRRALTHLAAKTSST 232

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297820038|ref|XP_002877902.1| hypothetical protein ARALYDRAFT_906697 [Arabidopsis lyrata subsp. lyrata] gi|297323740|gb|EFH54161.1| hypothetical protein ARALYDRAFT_906697 [Arabidopsis lyrata subsp. lyrata]

 Score =  279 bits (714), Expect = 5e-73,   Method: Compositional matrix adjust.
 Identities = 151/232 (65%), Positives = 185/232 (79%), Gaps = 17/232 (7%)

Query: 1   MFKFWGS-NEQQAQPRPQDVTSQS-WYPPSVVSPDSSRPATPSMSSFGSLNLQRPTEQSQ 58
           MF FWGS ++QQ Q RPQ+ +SQS WYPPS+VS  SS     S                Q
Sbjct: 1   MFNFWGSKDQQQGQSRPQEASSQSPWYPPSLVSSPSSSRPQTS---------------GQ 45

Query: 59  PLSHVSPAEAAGIIALLKDKSVDELRKLLADKDAYRQFLLSIDQVKIQNNIRDELHRETL 118
             ++VSP EAAGIIA LKDKSVDELRKLL+DKDAY+QFLLS+DQVKIQNNI+DEL RETL
Sbjct: 46  IGANVSPGEAAGIIAFLKDKSVDELRKLLSDKDAYQQFLLSLDQVKIQNNIKDELRRETL 105

Query: 119 QIARDNLDKELRMIELRNQSKIIRTTELAAAQEKLHDLERQKEQLLKLYSPASLLKRIQE 178
           Q+AR+NL+KE +++ELRNQ +IIRTTELAAAQEKL++LERQKE++LK YSP SLL ++QE
Sbjct: 106 QLARENLEKEPQIMELRNQCRIIRTTELAAAQEKLNELERQKEEILKFYSPGSLLHKLQE 165

Query: 179 AMNKTEEESENLHRQLLDRELDIGAFVQKYKKLRTTYHRRALVHLSAKTHSV 230
           AMN+ +EESE L  + L++E+D  AFVQKYKKLRTTYHRRAL+HL+AKT ++
Sbjct: 166 AMNQVDEESEALQEKFLEKEIDTVAFVQKYKKLRTTYHRRALIHLAAKTSNI 217

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|42570370|ref|NP_850268.2| vacuolar protein-sorting-associated protein 37-2 [Arabidopsis thaliana] gi|122215039|sp|Q3EBL9.1|VP372_ARATH RecName: Full=Vacuolar protein-sorting-associated protein 37 homolog 2; Short=AtVPS37-2; AltName: Full=ESCRT-I complex subunit VPS37 homolog 2 gi|330254189|gb|AEC09283.1| vacuolar protein-sorting-associated protein 37-2 [Arabidopsis thaliana]

 Score =  278 bits (712), Expect = 9e-73,   Method: Compositional matrix adjust.
 Identities = 141/233 (60%), Positives = 179/233 (76%), Gaps = 19/233 (8%)

Query: 1   MFKFWGSNEQQ-AQPRPQ-DVTSQSWYPPSVV-SPDSSRPATPSMSSFGSLNLQRPTEQS 57
           MF FWGS EQQ  Q RP  + ++  WY PS+V SP SSRP T                  
Sbjct: 1   MFNFWGSKEQQQGQSRPSPEASATPWYSPSLVTSPSSSRPQT----------------SG 44

Query: 58  QPLSHVSPAEAAGIIALLKDKSVDELRKLLADKDAYRQFLLSIDQVKIQNNIRDELHRET 117
           Q  SHVSP EAAGIIA+LKDKSVDELRKLL+DKDAY+QFL S+DQV IQNNIR+EL +ET
Sbjct: 45  QIPSHVSPGEAAGIIAILKDKSVDELRKLLSDKDAYQQFLHSLDQVTIQNNIREELRKET 104

Query: 118 LQIARDNLDKELRMIELRNQSKIIRTTELAAAQEKLHDLERQKEQLLKLYSPASLLKRIQ 177
           L +AR+NL+KE +++ELRNQ +IIRT+ELA AQEKL++LE Q+E++LK YSP SLL R+Q
Sbjct: 105 LHLARENLEKEPQIVELRNQCRIIRTSELATAQEKLNELENQREEILKFYSPGSLLHRLQ 164

Query: 178 EAMNKTEEESENLHRQLLDRELDIGAFVQKYKKLRTTYHRRALVHLSAKTHSV 230
           +AMN+ +EESE L ++ +++++D  AFVQKYKKLR+ YHRRAL+HL+AKT S+
Sbjct: 165 DAMNQVDEESEELQQKFMEKDIDTAAFVQKYKKLRSKYHRRALIHLAAKTSSI 217

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15231750|ref|NP_190880.1| vacuolar protein-sorting-associated protein 37-1 [Arabidopsis thaliana] gi|75202732|sp|Q9SCP9.1|VP371_ARATH RecName: Full=Vacuolar protein-sorting-associated protein 37 homolog 1; Short=AtVPS37-1; AltName: Full=ESCRT-I complex subunit VPS37 homolog 1 gi|6630732|emb|CAB64215.1| putative protein [Arabidopsis thaliana] gi|332645518|gb|AEE79039.1| vacuolar protein-sorting-associated protein 37-1 [Arabidopsis thaliana]

 Score =  278 bits (712), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 147/232 (63%), Positives = 183/232 (78%), Gaps = 17/232 (7%)

Query: 1   MFKFWGS-NEQQAQPRPQDVTSQS-WYPPSVVSPDSSRPATPSMSSFGSLNLQRPTEQSQ 58
           MF FWGS ++QQ Q RPQ+ +SQS WY PS+     S P++    S G ++ Q       
Sbjct: 1   MFNFWGSKDQQQGQSRPQEASSQSPWYSPSL----VSSPSSSRPQSSGQISAQ------- 49

Query: 59  PLSHVSPAEAAGIIALLKDKSVDELRKLLADKDAYRQFLLSIDQVKIQNNIRDELHRETL 118
               VSP EAAGII  LKDKSVDELRKLL+DKDAY+QFLLS+DQVK+QNNI+DEL RETL
Sbjct: 50  ----VSPGEAAGIIVFLKDKSVDELRKLLSDKDAYQQFLLSLDQVKVQNNIKDELRRETL 105

Query: 119 QIARDNLDKELRMIELRNQSKIIRTTELAAAQEKLHDLERQKEQLLKLYSPASLLKRIQE 178
           Q+ARDNL+KE +++ELRNQ +IIRTTELA AQEKL++LERQKE++LK YSP SLL ++QE
Sbjct: 106 QLARDNLEKEPQIMELRNQCRIIRTTELATAQEKLNELERQKEEILKFYSPGSLLHKLQE 165

Query: 179 AMNKTEEESENLHRQLLDRELDIGAFVQKYKKLRTTYHRRALVHLSAKTHSV 230
           AMN+ +EESE L  + L++E+D  AFVQKYKKLRTTYHRRAL+HL+AKT ++
Sbjct: 166 AMNQVDEESEALQEKFLEKEIDTAAFVQKYKKLRTTYHRRALIHLAAKTSNI 217

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224068893|ref|XP_002326225.1| predicted protein [Populus trichocarpa] gi|222833418|gb|EEE71895.1| predicted protein [Populus trichocarpa]

 Score =  270 bits (690), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 164/232 (70%), Positives = 196/232 (84%), Gaps = 8/232 (3%)

Query: 1   MFKFWGSNEQQAQPRPQDVT---SQSWYPPSVVSPDSS-RPATPSMSSFGSLNLQR-PTE 55
           MFKFWGS EQQ QP PQ+V    +QSWYPPSVV   SS RPATP+ +S  + +  + P E
Sbjct: 1   MFKFWGSQEQQGQPGPQEVAQGPAQSWYPPSVVGSPSSSRPATPTSTSSSTSHSFQSPAE 60

Query: 56  QSQPLSHVSPAEAAGIIALLKDKSVDELRKLLADKDAYRQFLLSIDQVKIQNNIRDELHR 115
           +  PLS  SPAEAA  I LLKDKSVDELRKLL+DKDAY QFLLS+DQVKIQNNIRDEL +
Sbjct: 61  R--PLSP-SPAEAAAFITLLKDKSVDELRKLLSDKDAYHQFLLSLDQVKIQNNIRDELRK 117

Query: 116 ETLQIARDNLDKELRMIELRNQSKIIRTTELAAAQEKLHDLERQKEQLLKLYSPASLLKR 175
           ETLQ+AR+NL+KE R++ELRNQ +IIRTTELAAA+EKL++LERQKE+LL+  SPASLL+R
Sbjct: 118 ETLQLARENLEKEPRIMELRNQCRIIRTTELAAAKEKLNELERQKEELLRSCSPASLLQR 177

Query: 176 IQEAMNKTEEESENLHRQLLDRELDIGAFVQKYKKLRTTYHRRALVHLSAKT 227
           +QEAMNKT+EESE LHRQ LD+E+D+G+FV KYKKLRTTYH+RAL+HL+AK 
Sbjct: 178 LQEAMNKTDEESEALHRQFLDKEIDLGSFVLKYKKLRTTYHKRALIHLAAKA 229

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388516893|gb|AFK46508.1| unknown [Lotus japonicus]

 Score =  268 bits (686), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 152/233 (65%), Positives = 188/233 (80%), Gaps = 13/233 (5%)

Query: 1   MFKFWGSNEQQAQPRPQDVTSQS---WYPPSVVSPDSSRPATPSMSSFGSLNLQRPTEQS 57
           MF+FWGS EQQ Q + Q     S   WYPPSV S  S RPATP+ SS         + Q 
Sbjct: 1   MFRFWGSQEQQQQQQQQPQDGSSSQSWYPPSVTS--SPRPATPTSSSS--------SSQQ 50

Query: 58  QPLSHVSPAEAAGIIALLKDKSVDELRKLLADKDAYRQFLLSIDQVKIQNNIRDELHRET 117
           +P SHV PAEAAGII+ LKDKSVDELRKLL+DKDAY+QFL S+DQVKIQNN++DEL +E 
Sbjct: 51  RPSSHVPPAEAAGIISALKDKSVDELRKLLSDKDAYQQFLNSLDQVKIQNNLKDELCKEN 110

Query: 118 LQIARDNLDKELRMIELRNQSKIIRTTELAAAQEKLHDLERQKEQLLKLYSPASLLKRIQ 177
           LQ+A +NL KE R++ELRNQ +IIRTTELA A EKL++LE+QKE+++KL SPASLL+RIQ
Sbjct: 111 LQLAEENLQKEPRIMELRNQCRIIRTTELATANEKLNELEKQKEEMMKLNSPASLLQRIQ 170

Query: 178 EAMNKTEEESENLHRQLLDRELDIGAFVQKYKKLRTTYHRRALVHLSAKTHSV 230
           E++NKT+EESENLH+ LLD E+D+GAF+QKYKKLRTTYHR+ L+HL+AKT ++
Sbjct: 171 ESINKTDEESENLHQNLLDGEIDLGAFLQKYKKLRTTYHRKTLIHLAAKTSTI 223

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297827155|ref|XP_002881460.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297327299|gb|EFH57719.1| predicted protein [Arabidopsis lyrata subsp. lyrata]

 Score =  264 bits (674), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 134/230 (58%), Positives = 174/230 (75%), Gaps = 16/230 (6%)

Query: 1   MFKFWGSNEQQAQPRPQDVTSQSWYPPSVVSPDSSRPATPSMSSFGSLNLQRPTEQSQPL 60
           MF FWGS EQQ    P + ++  WY PS+V+  SS  +                   Q  
Sbjct: 1   MFNFWGSKEQQQGQSP-EASATPWYSPSLVTSPSSSRSQ---------------TSGQIP 44

Query: 61  SHVSPAEAAGIIALLKDKSVDELRKLLADKDAYRQFLLSIDQVKIQNNIRDELHRETLQI 120
            HVSP EAAGIIA+LKDKSVDELRKLL+DK+AY+QFL S+DQV IQNNIR+EL +ETL +
Sbjct: 45  PHVSPGEAAGIIAILKDKSVDELRKLLSDKNAYQQFLHSLDQVTIQNNIREELRKETLHL 104

Query: 121 ARDNLDKELRMIELRNQSKIIRTTELAAAQEKLHDLERQKEQLLKLYSPASLLKRIQEAM 180
           AR+NL+KE +++ELRNQ +IIRT+ELA AQEKL++LE Q+E++LK YSP SLL R+Q+AM
Sbjct: 105 ARENLEKEPQIVELRNQCRIIRTSELATAQEKLNELENQREEILKFYSPGSLLHRLQDAM 164

Query: 181 NKTEEESENLHRQLLDRELDIGAFVQKYKKLRTTYHRRALVHLSAKTHSV 230
           NK +EESE L ++L+++++D  AFVQKYKKLR+ YHRRAL+HL+AKT S+
Sbjct: 165 NKVDEESEELQQKLMEKDIDTAAFVQKYKKLRSKYHRRALIHLAAKTSSI 214

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	235
TAIR|locus:2102008	217	VPS37-1 [Arabidopsis thaliana	0.914	0.990	0.633	2.1e-70
TAIR|locus:2040560	218	AT2G36680 [Arabidopsis thalian	0.914	0.986	0.586	3.2e-65
DICTYBASE|DDB_G0269510	333	vps37 "Modifier of rudimentary	0.685	0.483	0.261	1.3e-12
UNIPROTKB|F1SET6	330	VPS37A "Uncharacterized protei	0.872	0.621	0.262	2.6e-11
UNIPROTKB|Q29RR7	397	VPS37A "Uncharacterized protei	0.872	0.516	0.258	5.3e-09
UNIPROTKB|H0YBN0	170	VPS37A "Vacuolar protein sorti	0.608	0.841	0.258	1.7e-08
ZFIN|ZDB-GENE-030131-8312	387	vps37a "vacuolar protein sorti	0.770	0.467	0.247	3.8e-08
UNIPROTKB|Q8NEZ2	397	VPS37A "Vacuolar protein sorti	0.872	0.516	0.248	5e-08
ZFIN|ZDB-GENE-061110-126	323	zgc:153996 "zgc:153996" [Danio	0.604	0.439	0.282	1e-07
UNIPROTKB|E2R848	396	VPS37A "Uncharacterized protei	0.834	0.494	0.276	1.6e-07

TAIR|locus:2102008 VPS37-1 [Arabidopsis thaliana (taxid:3702)]

 Score = 713 (256.0 bits), Expect = 2.1e-70, P = 2.1e-70
 Identities = 147/232 (63%), Positives = 182/232 (78%)

Query:     1 MFKFWGS-NEQQAQPRPQDVTSQS-WYXXXXXXXXXXXXATPSMSSFGSLNLQRPTEQSQ 58
             MF FWGS ++QQ Q RPQ+ +SQS WY             +PS+ S  S +  RP    Q
Sbjct:     1 MFNFWGSKDQQQGQSRPQEASSQSPWY-------------SPSLVS--SPSSSRPQSSGQ 45

Query:    59 PLSHVSPAEAAGIIALLKDKSVDELRKLLADKDAYRQFLLSIDQVKIQNNIRDELHRETL 118
               + VSP EAAGII  LKDKSVDELRKLL+DKDAY+QFLLS+DQVK+QNNI+DEL RETL
Sbjct:    46 ISAQVSPGEAAGIIVFLKDKSVDELRKLLSDKDAYQQFLLSLDQVKVQNNIKDELRRETL 105

Query:   119 QIARDNLDKELRMIELRNQSKIIRTTELAAAQEKLHDLERQKEQLLKLYSPASLLKRIQE 178
             Q+ARDNL+KE +++ELRNQ +IIRTTELA AQEKL++LERQKE++LK YSP SLL ++QE
Sbjct:   106 QLARDNLEKEPQIMELRNQCRIIRTTELATAQEKLNELERQKEEILKFYSPGSLLHKLQE 165

Query:   179 AMNKTEEESENLHRQLLDRELDIGAFVQKYKKLRTTYHRRALVHLSAKTHSV 230
             AMN+ +EESE L  + L++E+D  AFVQKYKKLRTTYHRRAL+HL+AKT ++
Sbjct:   166 AMNQVDEESEALQEKFLEKEIDTAAFVQKYKKLRTTYHRRALIHLAAKTSNI 217

GO:0005634 "nucleus" evidence=ISM

GO:0000813 "ESCRT I complex" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2040560 AT2G36680 [Arabidopsis thaliana (taxid:3702)]

 Score = 664 (238.8 bits), Expect = 3.2e-65, P = 3.2e-65
 Identities = 136/232 (58%), Positives = 177/232 (76%)

Query:     1 MFKFWGSNEQQ-AQPRPQ-DVTSQSWYXXXXXXXXXXXXATPSMSSFGSLNLQRPTEQSQ 58
             MF FWGS EQQ  Q RP  + ++  WY             +PS+ +  S +  RP    Q
Sbjct:     1 MFNFWGSKEQQQGQSRPSPEASATPWY-------------SPSLVT--SPSSSRPQTSGQ 45

Query:    59 PLSHVSPAEAAGIIALLKDKSVDELRKLLADKDAYRQFLLSIDQVKIQNNIRDELHRETL 118
               SHVSP EAAGIIA+LKDKSVDELRKLL+DKDAY+QFL S+DQV IQNNIR+EL +ETL
Sbjct:    46 IPSHVSPGEAAGIIAILKDKSVDELRKLLSDKDAYQQFLHSLDQVTIQNNIREELRKETL 105

Query:   119 QIARDNLDKELRMIELRNQSKIIRTTELAAAQEKLHDLERQKEQLLKLYSPASLLKRIQE 178
              +AR+NL+KE +++ELRNQ +IIRT+ELA AQEKL++LE Q+E++LK YSP SLL R+Q+
Sbjct:   106 HLARENLEKEPQIVELRNQCRIIRTSELATAQEKLNELENQREEILKFYSPGSLLHRLQD 165

Query:   179 AMNKTEEESENLHRQLLDRELDIGAFVQKYKKLRTTYHRRALVHLSAKTHSV 230
             AMN+ +EESE L ++ +++++D  AFVQKYKKLR+ YHRRAL+HL+AKT S+
Sbjct:   166 AMNQVDEESEELQQKFMEKDIDTAAFVQKYKKLRSKYHRRALIHLAAKTSSI 217

GO:0005634 "nucleus" evidence=ISM

GO:0000813 "ESCRT I complex" evidence=ISS

DICTYBASE|DDB_G0269510 vps37 "Modifier of rudimentary (Modr) family protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 172 (65.6 bits), Expect = 1.3e-12, P = 1.3e-12
 Identities = 45/172 (26%), Positives = 91/172 (52%)

Query:    51 QRPTEQSQPLSHVS--PAEAAGIIALLKDKSVDELRKLLADKDAYRQFLLSIDQVKIQNN 108
             Q+P +Q    + +   P E       LK KSV+EL +LL ++D+   F+ S D+V   +N
Sbjct:   160 QKPQQQQNGTNKIPMIPTE----FPELKSKSVEELEELLKNEDSLNAFIYSYDEVSELSN 215

Query:   109 IRDELHRETLQIAR--DNLDKELRMIELRNQSKIIRTTELAAAQEKLHDLERQKEQLLKL 166
              + +L  E  ++ +  D L  ++  +     +   +  EL   QE+L   +++K  +   
Sbjct:   216 RKSKLLSENERLTKITDPLPNDINDLSANLMTSKQKLEELKRKQEQL---QQKKNSIADK 272

Query:   167 YSPASLLKRIQEAMNKTEEESENLHRQLLDRELDIGAFVQKYKKLRTTYHRR 218
             YS  +LL+ + ++++  E ES+N+    L+  L++  F +++K+ R++YH +
Sbjct:   273 YSQQNLLEILNDSISDLESESDNIVHSFLEGNLELKEFKKQFKEKRSSYHSK 324

GO:0000813 "ESCRT I complex" evidence=ISS

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0016020 "membrane" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0005768 "endosome" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0031902 "late endosome membrane" evidence=IEA

UNIPROTKB|F1SET6 VPS37A "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 163 (62.4 bits), Expect = 2.6e-11, P = 2.6e-11
 Identities = 57/217 (26%), Positives = 102/217 (47%)

Query:    13 QPRPQDVTSQSWYXXXXXXXXXXXXATPSMSSFGSL-NLQRP---TEQSQPLSHVSPA-- 66
             Q   + ++S S              A P+  SFG L NL  P   T+ S P+S       
Sbjct:    97 QEANRTISSLSVADTVSSSTTSYTTAKPAAPSFGVLSNLPLPVPTTDTSAPISQNGSGYK 156

Query:    67 --EAAGIIALLKDKSVDELRKLLADKDAYRQFLLSIDQVKIQNNIRDELHRETLQIARDN 124
               +       L + SV +L  +   ++   +  L++ Q+K     +D+L +   ++AR N
Sbjct:   157 MPDVPDAFPELSELSVSQLTDMNEQEEVLLEQFLTLPQLKQIITDKDDLVKNIEELARKN 216

Query:   125 LDKELRMIELRNQSKIIRTTELAAAQEKLHDLERQKE-QLLKLYSPASLLKRIQEAMNKT 183
             L  E   +E + QS ++   EL    +   + + Q++ +L +  S ++L  R++ A ++ 
Sbjct:   217 LLLE-PSLEAKRQS-VLDKYELLTQMKSTFEKKMQRQHELSESCSASALQARLKVAAHEA 274

Query:   184 EEESENLHRQLLDRELDIGAFVQKYKKLRTTYH-RRA 219
             EEES+N+    L+ + DI  F+  + + RT YH RRA
Sbjct:   275 EEESDNIAEDFLEGKTDIDDFLSSFMEKRTIYHCRRA 311

GO:0005813 "centrosome" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|Q29RR7 VPS37A "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 152 (58.6 bits), Expect = 5.3e-09, P = 5.3e-09
 Identities = 56/217 (25%), Positives = 102/217 (47%)

Query:    13 QPRPQDVTSQSWYXXXXXXXXXXXXATPSMSSFGSL-NLQRP---TEQSQPLSHVSPA-- 66
             Q   + ++S S              A P+  SFG L NL  P   T+ S P+S    A  
Sbjct:   164 QEANRTISSLSVADTVSSSTTSYTTAKPAAPSFGVLSNLPLPVPTTDTSTPISQNGFAYK 223

Query:    67 --EAAGIIALLKDKSVDELRKLLADKDAYRQFLLSIDQVKIQNNIRDELHRETLQIARDN 124
               +       L + SV +L  +   +D   +  +++ Q+K     +D+L +   ++AR N
Sbjct:   224 MPDIPDTFPELSELSVSQLTDMNEQEDVLLEQFVTLPQLKQIITDKDDLVKSIEELARKN 283

Query:   125 LDKELRMIELRNQSKIIRTTELAAAQEKLHDLERQKE-QLLKLYSPASLLKRIQEAMNKT 183
             L  E   +E + Q+ ++   EL    +   + + Q++ +L +  S ++L  R++ A ++ 
Sbjct:   284 LLLE-PSLEAKRQT-VLDKYELLTQMKSTFEKKMQRQHELSESCSASALQARLKVAAHEA 341

Query:   184 EEESENLHRQLLDRELDIGAFVQKYKKLRTTYH-RRA 219
             EEES+N+    L+ + DI  F+  + + RT  H RRA
Sbjct:   342 EEESDNIAEDFLEGKTDIDDFLSSFMEKRTICHCRRA 378

GO:0005813 "centrosome" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|H0YBN0 VPS37A "Vacuolar protein sorting-associated protein 37A" [Homo sapiens (taxid:9606)]

 Score = 130 (50.8 bits), Expect = 1.7e-08, P = 1.7e-08
 Identities = 38/147 (25%), Positives = 79/147 (53%)

Query:    75 LKDKSVDELRKLLADKDAYRQFLLSIDQVKIQNNIRDELHRETLQIARDNLDKELRMIEL 134
             L + SV +L  +   ++   +  L++ Q+K     +D+L +   ++AR NL  E   +E 
Sbjct:     7 LSELSVSQLTDMNEQEEVLLEQFLTLPQLKQIITDKDDLVKSIEELARKNLLLE-PSLEA 65

Query:   135 RNQSKIIRTTELAAAQEKLHDLERQKE-QLLKLYSPASLLKRIQEAMNKTEEESENLHRQ 193
             + Q+ ++   EL    +   + + Q++ +L +  S ++L  R++ A ++ EEES+N+   
Sbjct:    66 KRQT-VLDKYELLTQMKSTFEKKMQRQHELSESCSASALQARLKVAAHEAEEESDNIAED 124

Query:   194 LLDRELDIGAFVQKYKKLRTTYH-RRA 219
              L+ +++I  F+  + + RT  H RRA
Sbjct:   125 FLEGKMEIDDFLSSFMEKRTICHCRRA 151

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005813 "centrosome" evidence=IDA

GO:0043231 "intracellular membrane-bounded organelle" evidence=IDA

ZFIN|ZDB-GENE-030131-8312 vps37a "vacuolar protein sorting 37A" [Danio rerio (taxid:7955)]

 Score = 143 (55.4 bits), Expect = 3.8e-08, Sum P(2) = 3.8e-08
 Identities = 46/186 (24%), Positives = 89/186 (47%)

Query:    38 ATPSMSSFGSLNLQRPTEQSQP-LS-HV-SPAEAAGIIALLKDKSVDELRKLLADKDAYR 94
             A P+      L L  PT  SQ  L+ H+    +     + L + SV +L+ +    D   
Sbjct:   184 AAPAYGLITDLPLPVPTADSQSGLNGHIYKMPDIPDTFSELSEMSVSQLKDMSDQDDVLL 243

Query:    95 QFLLSIDQVKIQNNIRDELHRETLQIARDNLDKELRMIELRNQSKIIRTTELAAAQEKLH 154
              F + + Q+K   + ++EL    +++A+ NL  E ++ E + Q  + +  +L   +    
Sbjct:   244 DFFMCLPQLKQVTSDKEELVNSIVEMAKKNLQLEPQL-EGKRQEMLCKYEQLTQMKSVFE 302

Query:   155 DLERQKEQLLKLYSPASLLKRIQEAMNKTEEESENLHRQLLDRELDIGAFVQKYKKLRTT 214
                +++ +L +  S ++L  R++ A ++ EEESE      L+ + +I  F+  + + RT 
Sbjct:   303 TKMQRQHELSESCSLSALQARLKVAAHQAEEESEETAENFLEGKTEIDDFLASFMEKRTL 362

Query:   215 YH-RRA 219
              H RRA
Sbjct:   363 CHSRRA 368

GO:0007626 "locomotory behavior" evidence=IMP

UNIPROTKB|Q8NEZ2 VPS37A "Vacuolar protein sorting-associated protein 37A" [Homo sapiens (taxid:9606)]

 Score = 145 (56.1 bits), Expect = 5.0e-08, P = 5.0e-08
 Identities = 54/217 (24%), Positives = 100/217 (46%)

Query:    13 QPRPQDVTSQSWYXXXXXXXXXXXXATPSMSSFGSL-NLQRP---TEQSQPLSH----VS 64
             Q   + +TS S              A P+  SFG L NL  P    + S P S       
Sbjct:   164 QEANRSITSLSVADTVSSSTTSHTTAKPAAPSFGVLSNLPLPIPTVDASIPTSQNGFGYK 223

Query:    65 PAEAAGIIALLKDKSVDELRKLLADKDAYRQFLLSIDQVKIQNNIRDELHRETLQIARDN 124
               +       L + SV +L  +   ++   +  L++ Q+K     +D+L +   ++AR N
Sbjct:   224 MPDVPDAFPELSELSVSQLTDMNEQEEVLLEQFLTLPQLKQIITDKDDLVKSIEELARKN 283

Query:   125 LDKELRMIELRNQSKIIRTTELAAAQEKLHDLERQKE-QLLKLYSPASLLKRIQEAMNKT 183
             L  E   +E + Q+ ++   EL    +   + + Q++ +L +  S ++L  R++ A ++ 
Sbjct:   284 LLLE-PSLEAKRQT-VLDKYELLTQMKSTFEKKMQRQHELSESCSASALQARLKVAAHEA 341

Query:   184 EEESENLHRQLLDRELDIGAFVQKYKKLRTTYH-RRA 219
             EEES+N+    L+ +++I  F+  + + RT  H RRA
Sbjct:   342 EEESDNIAEDFLEGKMEIDDFLSSFMEKRTICHCRRA 378

GO:0008219 "cell death" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0031902 "late endosome membrane" evidence=IEA

GO:0010008 "endosome membrane" evidence=TAS

GO:0016032 "viral reproduction" evidence=TAS

GO:0016044 "cellular membrane organization" evidence=TAS

GO:0016197 "endosomal transport" evidence=TAS

GO:0046788 "egress of virus within host cell" evidence=TAS

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005813 "centrosome" evidence=IDA

GO:0043231 "intracellular membrane-bounded organelle" evidence=IDA

ZFIN|ZDB-GENE-061110-126 zgc:153996 "zgc:153996" [Danio rerio (taxid:7955)]

 Score = 141 (54.7 bits), Expect = 1.0e-07, P = 1.0e-07
 Identities = 41/145 (28%), Positives = 74/145 (51%)

Query:    75 LKDKSVDELRKLLADKDAYRQFLLSIDQVKIQNNIRDELHRETLQIARDNLDKELRMIEL 134
             L+D S  EL+ LL + +      L  D+++     R+        +A  NLD + R IE 
Sbjct:     4 LQDLSQSELQDLLDNLERVESMALESDEIQNIQLEREMALAANRSLAEQNLDMKPR-IE- 61

Query:   135 RNQSKII-RTTELAAAQEKLHDLERQKEQLLKLYSPASLLKRIQEAMNKTEEESENLHRQ 193
              ++++++ + TEL A +EK       ++ ++   SP  LL R+Q     TE ESE L  +
Sbjct:    62 NDRARLVEKYTELEAVREKYKQHCVLRDSIMGQVSPEGLLSRLQAEGASTEAESEALADE 121

Query:   194 LLDRELDIGAFVQKYKKLRTTYHRR 218
              L+  + + +F++++  LR+  H R
Sbjct:   122 FLEGSISLDSFLERFLSLRSLAHTR 146

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|E2R848 VPS37A "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 141 (54.7 bits), Expect = 1.6e-07, P = 1.6e-07
 Identities = 59/213 (27%), Positives = 102/213 (47%)

Query:    19 VTSQSWYXXXXXXXXXXXXATPSMSSFGSL-NLQRP---TEQSQPLSH----VSPAEAAG 70
             VTS S              A P+ + FG L NL  P   T+ S P+S         +   
Sbjct:   170 VTSLSVADTISSSTTSYTPAKPA-APFGILSNLPLPVPTTDTSAPISQNGFGYKMPDVPD 228

Query:    71 IIALLKDKSVDELRKLLADKDAYRQFLLSIDQVKIQNNIRDELHRETLQIARDNLDKELR 130
                 L + SV +L  +   ++   +  L++ Q+K     +D+L +   ++AR NL  E  
Sbjct:   229 TFPELSELSVSQLTDMNEQEEILLEQFLTLPQLKQIITDKDDLVKSIEELARKNLLLE-P 287

Query:   131 MIELRNQSKIIR---TTELAAAQEKLHDLERQKEQLLKLYSPASLLKRIQEAMNKTEEES 187
              +E + Q+ + +    T+L +A EK   ++RQ E L +  S ++L  R++ A ++ EEES
Sbjct:   288 SLEAKRQTVLDKYELLTQLKSAFEK--KMQRQHE-LSESCSVSALQARLKVAAHEAEEES 344

Query:   188 ENLHRQLLDRELDIGAFVQKYKKLRTTYH-RRA 219
             +N+    L+ + +I  F+  + + RT  H RRA
Sbjct:   345 DNIAEDFLEGKTEIDDFLSSFMEKRTICHCRRA 377

GO:0005813 "centrosome" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q3EBL9	VP372_ARATH	No assigned EC number	0.6051	0.9106	0.9816	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	235
pfam07200	150	pfam07200, Mod_r, Modifier of rudimentary (Mod(r))	7e-38
TIGR00763	775	TIGR00763, lon, ATP-dependent protease La	0.004

>gnl|CDD|203593 pfam07200, Mod_r, Modifier of rudimentary (Mod(r)) protein

 Score =  128 bits (325), Expect = 7e-38
 Identities = 60/144 (41%), Positives = 92/144 (63%), Gaps = 1/144 (0%)

Query: 75  LKDKSVDELRKLLADKDAYRQFLLSIDQVKIQNNIRDELHRETLQIARDNLDKELRMIEL 134
           LKD S+DEL++LL D+DA  +F+L + QV+  N  +D L  +   +A +NL+KE ++ EL
Sbjct: 1   LKDLSLDELKELLQDEDALLEFVLELPQVQDLNLEKDALLAQNESLAEENLEKEPQLEEL 60

Query: 135 RNQSKIIRTTELAAAQEKLHDLERQKEQLLKLYSPASLLKRIQEAMNKTEEESENLHRQL 194
           + Q +  +  EL   +EK  + ++Q ++L   YSP +LL  +Q A +K EEESE L  + 
Sbjct: 61  KAQLRD-KYEELKKLEEKYEEKKQQLDELSSSYSPDALLALLQVAASKAEEESEELAEKF 119

Query: 195 LDRELDIGAFVQKYKKLRTTYHRR 218
           L+ E+D+  F+QKYK  RT YH R
Sbjct: 120 LEGEIDLDTFLQKYKDKRTLYHLR 143

This family represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic, and both of these regions are represented in this family. Members of this family include the Vps37 subunit of the endosomal sorting complex ESCRT-I, a complex involved in recruiting transport machinery for protein sorting at the multivesicular body (MVB). The yeast ESCRT-I complex consists of three proteins (Vps23, Vps28 and Vps37). The mammalian homologue of Vps37 interacts with Tsg101 (Pfam: PF05743) through its mod(r) domain and its function is essential for lysosomal sorting of EGF receptors. Length = 150

>gnl|CDD|233119 TIGR00763, lon, ATP-dependent protease La

 Score = 37.7 bits (88), Expect = 0.004
 Identities = 34/145 (23%), Positives = 68/145 (46%), Gaps = 3/145 (2%)

Query: 41  SMSSFGSLNLQRPTEQSQPLSHVSPAEAAGIIA-LLKDKSVDELRKLLADKDAYRQFLLS 99
            + S   L  ++P   S       P   A  +A  L+ K  DEL+++L   +  ++   +
Sbjct: 135 ELISLSKLFREQPALLSALEDIDEPGRLADFVAASLQLKEKDELQEVLETVNIEKRLKKA 194

Query: 100 IDQVKIQNNIRDELHRETLQIARDNLDKELRMIELRNQSKIIRTTELAAAQEKLHDLERQ 159
           ++ +K +  +  +L  +  +   + ++K  R   LR Q K I+  EL   ++   +LE+ 
Sbjct: 195 LELLKKELEL-LKLQNKITKKVEEKMEKTQREYYLREQLKAIKK-ELGIEKDDKDELEKL 252

Query: 160 KEQLLKLYSPASLLKRIQEAMNKTE 184
           KE+L +L  P  + K I++ + K  
Sbjct: 253 KEKLEELKLPEEVKKVIEKELTKLS 277

This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock [Protein fate, Degradation of proteins, peptides, and glycopeptides]. Length = 775

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	235
PF07200	150	Mod_r: Modifier of rudimentary (Mod(r)) protein; I	100.0
KOG3270	244	consensus Uncharacterized conserved protein [Funct	99.93
KOG2391	365	consensus Vacuolar sorting protein/ubiquitin recep	96.89
KOG3270	244	consensus Uncharacterized conserved protein [Funct	96.22
KOG0971	1243	consensus Microtubule-associated protein dynactin	94.56
PF05266	190	DUF724: Protein of unknown function (DUF724); Inte	94.22
KOG1853	333	consensus LIS1-interacting protein NUDE [Cytoskele	91.98
KOG0995	581	consensus Centromere-associated protein HEC1 [Cell	91.57
PF07106	169	TBPIP: Tat binding protein 1(TBP-1)-interacting pr	91.57
PF08317	325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	88.8
PF08614	194	ATG16: Autophagy protein 16 (ATG16); InterPro: IPR	88.79
PF04111	314	APG6: Autophagy protein Apg6; InterPro: IPR007243	88.58
PF06785	401	UPF0242: Uncharacterised protein family (UPF0242);	88.31
PF05278	269	PEARLI-4: Arabidopsis phospholipase-like protein (	88.28
smart00787	312	Spc7 Spc7 kinetochore protein. This domain is foun	88.01
PF05667	594	DUF812: Protein of unknown function (DUF812); Inte	87.69
TIGR03752	472	conj_TIGR03752 integrating conjugative element pro	87.2
PRK04778	569	septation ring formation regulator EzrA; Provision	84.76
PF07888	546	CALCOCO1: Calcium binding and coiled-coil domain (	84.55
PF06005	72	DUF904: Protein of unknown function (DUF904); Inte	83.45
KOG2391	365	consensus Vacuolar sorting protein/ubiquitin recep	83.28
KOG0995	581	consensus Centromere-associated protein HEC1 [Cell	82.76
COG0541	451	Ffh Signal recognition particle GTPase [Intracellu	82.32
cd07596	218	BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of So	81.74
PF10498	359	IFT57: Intra-flagellar transport protein 57 ; Inte	81.62
KOG0980	980	consensus Actin-binding protein SLA2/Huntingtin-in	81.58
KOG0972	384	consensus Huntingtin interacting protein 1 (Hip1)	81.42
PF03904	230	DUF334: Domain of unknown function (DUF334); Inter	80.96
COG1196	1163	Smc Chromosome segregation ATPases [Cell division	80.85

>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins

Probab=100.00  E-value=3e-39  Score=265.64  Aligned_cols=148  Identities=36%  Similarity=0.523  Sum_probs=132.6

Q ss_pred             hccCCHHHHHHHhcCHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 026674           75 LKDKSVDELRKLLADKDAYRQFLLSIDQVKIQNNIRDELHRETLQIARDNLDKELRMIELRNQSKIIRTTELAAAQEKLH  154 (235)
Q Consensus        75 L~~LS~~EL~eLL~d~d~l~~~v~~l~~vq~l~~~~e~l~~~N~~LAe~NL~~e~~L~elR~ql~~~~~~el~~L~e~~~  154 (235)
                      |++||++||++|++|++++++||.++|+|+.+...+++++++|++||+.||+++|+|+++|+++ ...+.+++.|+.+|.
T Consensus         1 L~~lS~~eL~~Ll~d~~~l~~~v~~l~~~~~~~~~~~~l~~~n~~lAe~nL~~~~~l~~~r~~l-~~~~~~~~~L~~~~~   79 (150)
T PF07200_consen    1 LQDLSTEELQELLSDEEKLDAFVKSLPQVQELQQEREELLAENEELAEQNLSLEPELEELRSQL-QELYEELKELESEYQ   79 (150)
T ss_dssp             GGS-TTHHHHHHHHH-HHHHHHGGGGS--HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHH-HHHHHHHHHHHHHHH
T ss_pred             CCcCCHHHHHHHHcCHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence            6899999999999999999999999999999999999999999999999999999999999999 589999999999999


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 026674          155 DLERQKEQLLKLYSPASLLKRIQEAMNKTEEESENLHRQLLDRELDIGAFVQKYKKLRTTYHRRALVHL  223 (235)
Q Consensus       155 ek~~q~~~l~~~~Sp~aL~~~Lq~a~~eaEeeSE~Lae~FL~Geidvd~FL~qF~e~RklyH~Rr~K~~  223 (235)
                      +++++++.++.+|||++|+++|++++.++|++||+||++|++|++||++||++|+++|++||+|++|..
T Consensus        80 ~k~~~~~~l~~~~s~~~l~~~L~~~~~e~eeeSe~lae~fl~g~~d~~~Fl~~f~~~R~~yH~R~~K~E  148 (150)
T PF07200_consen   80 EKEQQQDELSSNYSPDALLARLQAAASEAEEESEELAEEFLDGEIDVDDFLKQFKEKRKLYHLRRAKEE  148 (150)
T ss_dssp             HHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHC-S-SSSHHHHHHHHHHHHHHHHHHHHHH---H
T ss_pred             HHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhhhc
Confidence            999999999999999999999999999999999999999999999999999999999999999999864

The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.

>KOG3270 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.93  E-value=4.4e-27  Score=206.60  Aligned_cols=223  Identities=37%  Similarity=0.535  Sum_probs=187.7

Q ss_pred             CCCCCCCccc-cCCCCCCCC-CCCcccCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCchhHhhhhHHhcc
Q 026674            1 MFKFWGSNEQ-QAQPRPQDV-TSQSWYPPSVV-SPDSSRPATPSMSSFGSLNLQRPTEQSQPLSHVSPAEAAGIIALLKD   77 (235)
Q Consensus         1 ~~~~~~~~~~-~~~~~~~~~-~~~~~~~p~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~f~~L~~   77 (235)
                      ||.|||+..| |++.+|... +.-.||||+.+ +++++++.++++.=-+..+.-=+.+     -+.+|++..++.-.|.+
T Consensus         1 l~~~~g~~~~q~~~~~~~~~~~~~p~y~ps~~~s~~~~q~q~~~~~~~~~~lk~i~~d-----~~~~~~~~~~~~~~L~~   75 (244)
T KOG3270|consen    1 LFEFWGSKMQQQGQSRPSPQNSQDPWYSPSLATSRSLAQPQATSSGQISALLKSIIVD-----DQQSPGEADGLLALLKD   75 (244)
T ss_pred             CcchhcchhhhccccCCCcccccCCCcChhhhhchhhcccccccchhhhhhhhccccc-----cccCccchhhHHHHhhh
Confidence            7999999874 477766544 66789999998 9999999876544322111111112     35678888888888888


Q ss_pred             C-CHHHHHHHhc--CHHHHHHHHHhcHHHHHHH------HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHHHHHHHHH
Q 026674           78 K-SVDELRKLLA--DKDAYRQFLLSIDQVKIQN------NIRDELHRETLQIARDNLDKELRMIELRNQSKIIRTTELAA  148 (235)
Q Consensus        78 L-S~~EL~eLL~--d~d~l~~~v~~l~~vq~l~------~~~e~l~~~N~~LAe~NL~~e~~L~elR~ql~~~~~~el~~  148 (235)
                      . |++||.+++.  |.|....|+..+++|+.++      ..+++|....+.||+.||++++.+.++|+.+. +.++.+..
T Consensus        76 ~~sv~El~~l~a~r~~d~~~Q~i~lldQv~~l~~l~~~~~~~e~L~~~~e~l~r~nl~~~p~l~el~~~~~-~~~t~~~~  154 (244)
T KOG3270|consen   76 KKSVDELNELLAERDKDAEEQFIELLDQVQKLNGLEVARKIQEKLVKSVEKLARENLEKEPALVELRNQAS-DIFTQLEN  154 (244)
T ss_pred             hhhhHHHHHhhhhhchhhhHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccchhhccchHHHHhhhh-hhhhhhhc
Confidence            8 9999999998  9999999999999999999      79999999999999999999999999999995 45555555


Q ss_pred             -HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 026674          149 -AQEKLHDLERQKEQLLKLYSPASLLKRIQEAMNKTEEESENLHRQLLDRELDIGAFVQKYKKLRTTYHRRALVHLSAKT  227 (235)
Q Consensus       149 -L~e~~~ek~~q~~~l~~~~Sp~aL~~~Lq~a~~eaEeeSE~Lae~FL~Geidvd~FL~qF~e~RklyH~Rr~K~~a~~~  227 (235)
                       .......+.+++.+.+..|++..+++||++++.+++++|+..++.|+.|.++++.|+..|...|+.+|.|..|+.++..
T Consensus       155 ~~~s~~~~l~~~~~~~~~~~~~~~~l~rL~~aa~~~~~~s~~~~~~fl~~~~~~~~f~ss~~~~~~~~~~r~~~~~~l~~  234 (244)
T KOG3270|consen  155 GEISKEDELKKFKDKKSKPYSPKIILARLKAAAMEADEESDRQGEQFLPGPPAVGGFPSSGFMPRTGSHQRGPKEERLPP  234 (244)
T ss_pred             cccccchHHHhhhcccccccchHHHHHHHHHHHHhhcccccccccCCCCCCcccccccccccccCcccCCCCcccccCCC
Confidence             4445556666788899999999999999999999999999999999999999999999999999999999999999887


Q ss_pred             cc
Q 026674          228 HS  229 (235)
Q Consensus       228 ~~  229 (235)
                      ..
T Consensus       235 ~~  236 (244)
T KOG3270|consen  235 IL  236 (244)
T ss_pred             CC
Confidence            55

>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=96.89  E-value=0.39  Score=45.08  Aligned_cols=32  Identities=22%  Similarity=0.394  Sum_probs=25.2

Q ss_pred             HHHHHHhcCCCCHHHHHHHHHH-HHHHHHHHHH
Q 026674          189 NLHRQLLDRELDIGAFVQKYKK-LRTTYHRRAL  220 (235)
Q Consensus       189 ~Lae~FL~Geidvd~FL~qF~e-~RklyH~Rr~  220 (235)
                      .|.+.|-+|.|++|.||+.-+- .|+-+-+|+.
T Consensus       321 ~L~~~~r~G~i~l~~yLr~VR~lsReQF~~rat  353 (365)
T KOG2391|consen  321 SLGKSLRDGVIDLDQYLRHVRLLSREQFILRAT  353 (365)
T ss_pred             HHHHHHhcCeeeHHHHHHHHHHHHHHHHHHHHH
Confidence            6778888999999999998875 4666666654

>KOG3270 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.22  E-value=0.012  Score=52.73  Aligned_cols=130  Identities=15%  Similarity=0.176  Sum_probs=84.1

Q ss_pred             HHHHHHhcCHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 026674           81 DELRKLLADKDAYRQFLLSIDQVKIQNNIRDELHRETLQIARDNLDKELRMIELRNQSKIIRTTELAAAQEKLHDLERQK  160 (235)
Q Consensus        81 ~EL~eLL~d~d~l~~~v~~l~~vq~l~~~~e~l~~~N~~LAe~NL~~e~~L~elR~ql~~~~~~el~~L~e~~~ek~~q~  160 (235)
                      .+|+.++.|.+...+-+.++..+  +... ..+-.-|+.+|+++++.++++.++.++++  .+.+++.....-+++.+. 
T Consensus        50 ~~lk~i~~d~~~~~~~~~~~~~~--L~~~-~sv~El~~l~a~r~~d~~~Q~i~lldQv~--~l~~l~~~~~~~e~L~~~-  123 (244)
T KOG3270|consen   50 ALLKSIIVDDQQSPGEADGLLAL--LKDK-KSVDELNELLAERDKDAEEQFIELLDQVQ--KLNGLEVARKIQEKLVKS-  123 (244)
T ss_pred             hhhhccccccccCccchhhHHHH--hhhh-hhhHHHHHhhhhhchhhhHHHHHHHHHHH--HhhccchhHHHHHHHHHH-
Confidence            45666777766666655555433  2222 45556678888999999999999999885  344444433222222222 


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHHhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHH
Q 026674          161 EQLLKLYSPASLLKRIQEAMNKTEEESENLHRQLLDRELDIGAFVQKYKKLRTTYHRRALV  221 (235)
Q Consensus       161 ~~l~~~~Sp~aL~~~Lq~a~~eaEeeSE~Lae~FL~Geidvd~FL~qF~e~RklyH~Rr~K  221 (235)
                      -+...+-+.     .+.-++-++.+.+.++-..|..|+++..+|+.+|+..-...|.|..+
T Consensus       124 ~e~l~r~nl-----~~~p~l~el~~~~~~~~t~~~~~~~s~~~~l~~~~~~~~~~~~~~~~  179 (244)
T KOG3270|consen  124 VEKLARENL-----EKEPALVELRNQASDIFTQLENGEISKEDELKKFKDKKSKPYSPKII  179 (244)
T ss_pred             HHHhcccch-----hhccchHHHHhhhhhhhhhhhccccccchHHHhhhcccccccchHHH
Confidence            222222222     34556677778888888889999999999999988777777666665

>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]

Probab=94.56  E-value=1.7  Score=45.78  Aligned_cols=104  Identities=20%  Similarity=0.235  Sum_probs=68.4

Q ss_pred             HHHHHHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH-H----------------------HHhcCCHHHH
Q 026674          116 ETLQIARDNLDKELRMIELRNQSKIIRTTELAAAQEKLHDLERQKE-Q----------------------LLKLYSPASL  172 (235)
Q Consensus       116 ~N~~LAe~NL~~e~~L~elR~ql~~~~~~el~~L~e~~~ek~~q~~-~----------------------l~~~~Sp~aL  172 (235)
                      =+.+|++.|+.++.++..|+..+  ..++++..+.+++.+-.+++. +                      +-.-|+.+..
T Consensus       449 MV~qLtdknlnlEekVklLeetv--~dlEalee~~EQL~Esn~ele~DLreEld~~~g~~kel~~r~~aaqet~yDrdqT  526 (1243)
T KOG0971|consen  449 MVEQLTDKNLNLEEKVKLLEETV--GDLEALEEMNEQLQESNRELELDLREELDMAKGARKELQKRVEAAQETVYDRDQT  526 (1243)
T ss_pred             HHHHHHhhccCHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHHHH
Confidence            46789999999999999999877  468888888887776544333 1                      1235666666


Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHhc------C--CCCHHHHHHHHHHHHHHHHHHHHH
Q 026674          173 LKRIQEAMNKTEEESENLHRQLLD------R--ELDIGAFVQKYKKLRTTYHRRALV  221 (235)
Q Consensus       173 ~~~Lq~a~~eaEeeSE~Lae~FL~------G--eidvd~FL~qF~e~RklyH~Rr~K  221 (235)
                      +.+++..+....+.-..+.++-..      +  .++-..|.-+-+=.-...|-|.+-
T Consensus       527 I~KfRelva~Lqdqlqe~~dq~~Sseees~q~~s~~~et~dyk~~fa~skayaraie  583 (1243)
T KOG0971|consen  527 IKKFRELVAHLQDQLQELTDQQESSEEESQQPPSVDPETFDYKIKFAESKAYARAIE  583 (1243)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhhHHHhcCCCCCchhhhHHHHHHHHhHHHHHHHH
Confidence            666666666666655555443221      2  245566666666666667766654

>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana

Probab=94.22  E-value=2.2  Score=36.95  Aligned_cols=50  Identities=22%  Similarity=0.291  Sum_probs=30.3

Q ss_pred             HHHHHHHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHhHHHHHHHHHHHh
Q 026674          146 LAAAQEKLHDLERQKEQLL-KLYSPASLLKRIQEAMNKTEEESENLHRQLL  195 (235)
Q Consensus       146 l~~L~e~~~ek~~q~~~l~-~~~Sp~aL~~~Lq~a~~eaEeeSE~Lae~FL  195 (235)
                      +..|+.+..+++.+...+. .+=.-+.=+.+|+..+..++++++.+.-+|-
T Consensus       133 i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~~l~~~~~~~e~~F~  183 (190)
T PF05266_consen  133 IKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEAEALKEEIENAELEFQ  183 (190)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444444444444322221 1222335578899999999999999888884

>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]

Probab=91.98  E-value=8.9  Score=35.07  Aligned_cols=62  Identities=8%  Similarity=0.061  Sum_probs=41.3

Q ss_pred             cCCHHHHHHHhcCHHHHHHHHHhcHHH-HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHh
Q 026674           77 DKSVDELRKLLADKDAYRQFLLSIDQV-KIQNNIRDELHRETLQIARDNLDKELRMIELRNQS  138 (235)
Q Consensus        77 ~LS~~EL~eLL~d~d~l~~~v~~l~~v-q~l~~~~e~l~~~N~~LAe~NL~~e~~L~elR~ql  138 (235)
                      .+..+=++.+++-.+.|.+|-...-++ ..+...++++...|+.|--.|-.+.-+++.+|...
T Consensus        20 ~l~~~ykq~f~~~reEl~EFQegSrE~EaelesqL~q~etrnrdl~t~nqrl~~E~e~~Kek~   82 (333)
T KOG1853|consen   20 LLHHEYKQHFLQMREELNEFQEGSREIEAELESQLDQLETRNRDLETRNQRLTTEQERNKEKQ   82 (333)
T ss_pred             hhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445556667777777777777766555 34555777777778877777766666666666544

>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]

Probab=91.57  E-value=16  Score=36.65  Aligned_cols=65  Identities=17%  Similarity=0.265  Sum_probs=42.2

Q ss_pred             hcCCHHHHH------HHHHHHHHHhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH--HHHHHHHhhhcc
Q 026674          165 KLYSPASLL------KRIQEAMNKTEEESENLHRQLLDRELDIGAFVQKYKKLRTTYHR--RALVHLSAKTHS  229 (235)
Q Consensus       165 ~~~Sp~aL~------~~Lq~a~~eaEeeSE~Lae~FL~Geidvd~FL~qF~e~RklyH~--Rr~K~~a~~~~~  229 (235)
                      ++||+.-+-      ..|...+.++.-+.|.+-+.--+-+....+|.++-..+=.-||.  |+++..+++.+.
T Consensus       327 Q~iS~~dve~mn~Er~~l~r~l~~i~~~~d~l~k~vw~~~l~~~~~f~~le~~~~~~~~l~~~i~l~~~~~~~  399 (581)
T KOG0995|consen  327 QGISGEDVERMNLERNKLKRELNKIQSELDRLSKEVWELKLEIEDFFKELEKKFIDLNSLIRRIKLGIAENSK  399 (581)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            477777653      44777777888888887777644444457777666666555664  677766555544

>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences

Probab=91.57  E-value=4.6  Score=33.60  Aligned_cols=20  Identities=25%  Similarity=0.536  Sum_probs=13.1

Q ss_pred             CHHHHHHHHHHHHHHHHHHH
Q 026674          200 DIGAFVQKYKKLRTTYHRRA  219 (235)
Q Consensus       200 dvd~FL~qF~e~RklyH~Rr  219 (235)
                      ++....+.|...|+.+=.|+
T Consensus       146 e~~~~~~~~~~~~k~w~kRK  165 (169)
T PF07106_consen  146 EKEKLEKEYKKWRKEWKKRK  165 (169)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            45666677777777766654

TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []

Probab=88.80  E-value=18  Score=33.49  Aligned_cols=84  Identities=19%  Similarity=0.241  Sum_probs=40.8

Q ss_pred             HHHHHHhcCHHHHHHHHHhcHHH-HHHHHHHHHHHHHHHHHH----HHhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 026674           81 DELRKLLADKDAYRQFLLSIDQV-KIQNNIRDELHRETLQIA----RDNLDKELRMIELRNQSKIIRTTELAAAQEKLHD  155 (235)
Q Consensus        81 ~EL~eLL~d~d~l~~~v~~l~~v-q~l~~~~e~l~~~N~~LA----e~NL~~e~~L~elR~ql~~~~~~el~~L~e~~~e  155 (235)
                      +.+..|-+|...|.+.+..+..+ ..+......|+.+...|-    +-...-..+|..+|.++. ..-.+++..+.+..+
T Consensus       156 ~~~~~L~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~Lk~~~~e~~~~D~~eL~~lr~eL~-~~~~~i~~~k~~l~e  234 (325)
T PF08317_consen  156 ENLELLQEDYAKLDKQLEQLDELLPKLRERKAELEEELENLKQLVEEIESCDQEELEALRQELA-EQKEEIEAKKKELAE  234 (325)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence            34444555666666666554433 222333333333332222    123334456667777663 344456655566666


Q ss_pred             HHHHHHHHHh
Q 026674          156 LERQKEQLLK  165 (235)
Q Consensus       156 k~~q~~~l~~  165 (235)
                      +..+++.+..
T Consensus       235 l~~el~~l~~  244 (325)
T PF08317_consen  235 LQEELEELEE  244 (325)
T ss_pred             HHHHHHHHHH
Confidence            6655554443

>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=88.79  E-value=7.7  Score=33.16  Aligned_cols=23  Identities=26%  Similarity=0.460  Sum_probs=14.8

Q ss_pred             HHHHHHHHHhHHHHHHHHHHHhc
Q 026674          174 KRIQEAMNKTEEESENLHRQLLD  196 (235)
Q Consensus       174 ~~Lq~a~~eaEeeSE~Lae~FL~  196 (235)
                      ..+......+++|-..|+++|++
T Consensus       161 ~~~e~k~~~l~~En~~Lv~Rwm~  183 (194)
T PF08614_consen  161 NMLEEKLRKLEEENRELVERWMQ  183 (194)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            44555666666777777777664

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.

>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=88.58  E-value=11  Score=34.96  Aligned_cols=76  Identities=20%  Similarity=0.348  Sum_probs=19.5

Q ss_pred             HHHHHHhcCHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 026674           81 DELRKLLADKDAYRQFLLSIDQVKIQNNIRDELHRETLQIARDNLDKELRMIELRNQSKIIRTTELAAAQEKLHDLE  157 (235)
Q Consensus        81 ~EL~eLL~d~d~l~~~v~~l~~vq~l~~~~e~l~~~N~~LAe~NL~~e~~L~elR~ql~~~~~~el~~L~e~~~ek~  157 (235)
                      .+++....+.+.+..|+..+............+..+...|-++.-+...+|.++..+.. .--.++..++.+..++.
T Consensus        16 ~~~~~~~~E~~~Y~~fL~~l~~~~~~~~~~~~~~~el~~le~Ee~~l~~eL~~LE~e~~-~l~~el~~le~e~~~l~   91 (314)
T PF04111_consen   16 KQLEQAEKERDTYQEFLKKLEEESDSEEDIEELEEELEKLEQEEEELLQELEELEKERE-ELDQELEELEEELEELD   91 (314)
T ss_dssp             --------------------------HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence            45666777788888888877643333334444444444444433344444444444331 12233444444444443

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.

>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function

Probab=88.31  E-value=20  Score=33.94  Aligned_cols=75  Identities=17%  Similarity=0.254  Sum_probs=43.6

Q ss_pred             HHHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----C-HHHHHHHHHHHHHHhHHHHHHHHHH
Q 026674          119 QIARDNLDKELRMIELRNQSKIIRTTELAAAQEKLHDLERQKEQLLKLY----S-PASLLKRIQEAMNKTEEESENLHRQ  193 (235)
Q Consensus       119 ~LAe~NL~~e~~L~elR~ql~~~~~~el~~L~e~~~ek~~q~~~l~~~~----S-p~aL~~~Lq~a~~eaEeeSE~Lae~  193 (235)
                      .+-++|-.++-+|+++..++. ++-++-..|..+..+-..-++.+.+.|    . +...+++=|+.+.+.|..-++|--.
T Consensus       138 ~~~EEn~~lqlqL~~l~~e~~-Ekeeesq~LnrELaE~layqq~L~~eyQatf~eq~~ml~kRQ~yI~~LEsKVqDLm~E  216 (401)
T PF06785_consen  138 HLREENQCLQLQLDALQQECG-EKEEESQTLNRELAEALAYQQELNDEYQATFVEQHSMLDKRQAYIGKLESKVQDLMYE  216 (401)
T ss_pred             HHHHHHHHHHHhHHHHHHHHh-HhHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHHHHHHHHHHHHH
Confidence            334566666666666666662 444555555555555544444444433    3 3445777788888877777775544


Q ss_pred             H
Q 026674          194 L  194 (235)
Q Consensus       194 F  194 (235)
                      |
T Consensus       217 i  217 (401)
T PF06785_consen  217 I  217 (401)
T ss_pred             H
Confidence            4

>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4

Probab=88.28  E-value=20  Score=32.77  Aligned_cols=56  Identities=18%  Similarity=0.313  Sum_probs=37.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhHHHHHHHHHHHhcCCCCHHHH
Q 026674          143 TTELAAAQEKLHDLERQKEQLLKLYSPASLLKRIQEAMNKTEEESENLHRQLLDRELDIGAF  204 (235)
Q Consensus       143 ~~el~~L~e~~~ek~~q~~~l~~~~Sp~aL~~~Lq~a~~eaEeeSE~Lae~FL~Geidvd~F  204 (235)
                      -.++..+.+++.++++++.++..+.  ..    ....+.+++.++-.|.+.+...+.-|+.|
T Consensus       206 ~~ELe~~~EeL~~~Eke~~e~~~~i--~e----~~~rl~~l~~~~~~l~k~~~~~~sKV~kf  261 (269)
T PF05278_consen  206 KEELEELEEELKQKEKEVKEIKERI--TE----MKGRLGELEMESTRLSKTIKSIKSKVEKF  261 (269)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH--HH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3567777777777777777777665  23    34446678888888888765544445555

>smart00787 Spc7 Spc7 kinetochore protein

Probab=88.01  E-value=22  Score=32.97  Aligned_cols=34  Identities=21%  Similarity=0.270  Sum_probs=15.7

Q ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026674          129 LRMIELRNQSKIIRTTELAAAQEKLHDLERQKEQL  163 (235)
Q Consensus       129 ~~L~elR~ql~~~~~~el~~L~e~~~ek~~q~~~l  163 (235)
                      .+|..+|.++. ....++.....+..+++.++..+
T Consensus       204 ~eL~~lk~~l~-~~~~ei~~~~~~l~e~~~~l~~l  237 (312)
T smart00787      204 TELDRAKEKLK-KLLQEIMIKVKKLEELEEELQEL  237 (312)
T ss_pred             HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence            34555555552 33444444444444444444433

This domain is found in cell division proteins which are required for kinetochore-spindle association.

>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function

Probab=87.69  E-value=34  Score=34.66  Aligned_cols=102  Identities=16%  Similarity=0.219  Sum_probs=57.9

Q ss_pred             HHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH---H-HhcCCHHHHHHHHHHHHHHhH
Q 026674          109 IRDELHRETLQIARDNLDKELRMIELRNQSKIIRTTELAAAQEKLHDLERQKEQ---L-LKLYSPASLLKRIQEAMNKTE  184 (235)
Q Consensus       109 ~~e~l~~~N~~LAe~NL~~e~~L~elR~ql~~~~~~el~~L~e~~~ek~~q~~~---l-~~~~Sp~aL~~~Lq~a~~eaE  184 (235)
                      ++++|..++..|...-.....++..++..++ .-..++...+.+..++++++..   + .=-.+++.-+++|+..+....
T Consensus       329 el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~-q~~~e~~~~~~~~~~le~~~~l~~k~~~lL~d~e~ni~kL~~~v~~s~  407 (594)
T PF05667_consen  329 ELEELQEQLDELESQIEELEAEIKMLKSSLK-QLEEELEEKEAENEELEEELKLKKKTVELLPDAEENIAKLQALVEASE  407 (594)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHH
Confidence            4444444555554444445555555555442 1223344444444444443331   1 113467777799999999999


Q ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 026674          185 EESENLHRQLLDRELDIGAFVQKYKKLRTT  214 (235)
Q Consensus       185 eeSE~Lae~FL~Geidvd~FL~qF~e~Rkl  214 (235)
                      +.-..|+.+|-.-...   .+++|+..|..
T Consensus       408 ~rl~~L~~qWe~~R~p---L~~e~r~lk~~  434 (594)
T PF05667_consen  408 QRLVELAQQWEKHRAP---LIEEYRRLKEK  434 (594)
T ss_pred             HHHHHHHHHHHHHHhH---HHHHHHHHHHH
Confidence            9999999999765543   44555555543

>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family

Probab=87.20  E-value=3.9  Score=40.13  Aligned_cols=62  Identities=21%  Similarity=0.174  Sum_probs=45.8

Q ss_pred             cCCHHHHHHHhcCHHHHHHHHHhc-HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHh
Q 026674           77 DKSVDELRKLLADKDAYRQFLLSI-DQVKIQNNIRDELHRETLQIARDNLDKELRMIELRNQS  138 (235)
Q Consensus        77 ~LS~~EL~eLL~d~d~l~~~v~~l-~~vq~l~~~~e~l~~~N~~LAe~NL~~e~~L~elR~ql  138 (235)
                      .|+.+|++.|=-+-|-..+=|..| -++++++.+.+.+..+|+.|.++|-.++.+...+..++
T Consensus        41 ~ltpee~kalGiegDTP~DTlrTlva~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i  103 (472)
T TIGR03752        41 ELSPEELKALGIEGDTPADTLRTLVAEVKELRKRLAKLISENEALKAENERLQKREQSIDQQI  103 (472)
T ss_pred             cCCcchhHhcCCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence            889999998765544333333332 35788888999999999999999988877666666665

Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.

>PRK04778 septation ring formation regulator EzrA; Provisional

Probab=84.76  E-value=45  Score=33.26  Aligned_cols=92  Identities=15%  Similarity=0.169  Sum_probs=46.5

Q ss_pred             hhhHHhccCCHHHHHHHhcC-HHHHHHHHHhcH----HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhH--HHH
Q 026674           70 GIIALLKDKSVDELRKLLAD-KDAYRQFLLSID----QVKIQNNIRDELHRETLQIARDNLDKELRMIELRNQSK--IIR  142 (235)
Q Consensus        70 ~~f~~L~~LS~~EL~eLL~d-~d~l~~~v~~l~----~vq~l~~~~e~l~~~N~~LAe~NL~~e~~L~elR~ql~--~~~  142 (235)
                      ...+.|..+..++.++-++. .+.++.+...+.    ..+........+...+..+-+.|-....+++.++....  -..
T Consensus       267 ~~~~~l~~l~l~~~~~~~~~i~~~Id~Lyd~lekE~~A~~~vek~~~~l~~~l~~~~e~~~~l~~Ei~~l~~sY~l~~~e  346 (569)
T PRK04778        267 ENLALLEELDLDEAEEKNEEIQERIDQLYDILEREVKARKYVEKNSDTLPDFLEHAKEQNKELKEEIDRVKQSYTLNESE  346 (569)
T ss_pred             HHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHccccCchh
Confidence            34445666776666666544 444554444332    22333334444555555666666666667777766521  112


Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q 026674          143 TTELAAAQEKLHDLERQKE  161 (235)
Q Consensus       143 ~~el~~L~e~~~ek~~q~~  161 (235)
                      ....+.+..++.++..++.
T Consensus       347 ~~~~~~lekeL~~Le~~~~  365 (569)
T PRK04778        347 LESVRQLEKQLESLEKQYD  365 (569)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            2234444444444444444

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)

Probab=84.55  E-value=36  Score=34.19  Aligned_cols=53  Identities=13%  Similarity=0.174  Sum_probs=28.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 026674          105 IQNNIRDELHRETLQIARDNLDKELRMIELRNQSKIIRTTELAAAQEKLHDLER  158 (235)
Q Consensus       105 ~l~~~~e~l~~~N~~LAe~NL~~e~~L~elR~ql~~~~~~el~~L~e~~~ek~~  158 (235)
                      .+..++++|+..|..|-+.+..++.++..+..++. ....+...|+.++.++..
T Consensus       147 ~~qkE~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~-~~~ee~e~L~~~~kel~~  199 (546)
T PF07888_consen  147 ECQKEKEELLKENEQLEEEVEQLREEVERLEAELE-QEEEEMEQLKQQQKELTE  199 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence            44455666666666666666666666666665552 233344445554444443

This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].

>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation

Probab=83.45  E-value=15  Score=26.90  Aligned_cols=36  Identities=11%  Similarity=0.229  Sum_probs=22.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Q 026674          101 DQVKIQNNIRDELHRETLQIARDNLDKELRMIELRN  136 (235)
Q Consensus       101 ~~vq~l~~~~e~l~~~N~~LAe~NL~~e~~L~elR~  136 (235)
                      +-+..++..++.|...|..|.+.|-.+..+...++.
T Consensus        18 eti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~   53 (72)
T PF06005_consen   18 ETIALLQMENEELKEKNNELKEENEELKEENEQLKQ   53 (72)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence            445666667777777777777666665555444443

It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.

>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=83.28  E-value=29  Score=32.88  Aligned_cols=27  Identities=7%  Similarity=0.027  Sum_probs=10.9

Q ss_pred             HHHHHHHHHHHHhhhhhHHHHHHHHHh
Q 026674          112 ELHRETLQIARDNLDKELRMIELRNQS  138 (235)
Q Consensus       112 ~l~~~N~~LAe~NL~~e~~L~elR~ql  138 (235)
                      .++...++..+.+...+..|..-..++
T Consensus       218 klR~r~eeeme~~~aeq~slkRt~EeL  244 (365)
T KOG2391|consen  218 KLRRRREEEMERLQAEQESLKRTEEEL  244 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence            333333333444444444444333444

>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]

Probab=82.76  E-value=39  Score=34.02  Aligned_cols=59  Identities=15%  Similarity=0.168  Sum_probs=36.0

Q ss_pred             HHHHHH-HhcCHHHHHHHHHhcHHHH-HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHh
Q 026674           80 VDELRK-LLADKDAYRQFLLSIDQVK-IQNNIRDELHRETLQIARDNLDKELRMIELRNQS  138 (235)
Q Consensus        80 ~~EL~e-LL~d~d~l~~~v~~l~~vq-~l~~~~e~l~~~N~~LAe~NL~~e~~L~elR~ql  138 (235)
                      ..+... |-+|-.++.+|+.++.+.+ .+...++++..+++.--+++-..+.+..+||.++
T Consensus       264 lre~~~~L~~D~nK~~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~I  324 (581)
T KOG0995|consen  264 LREKKARLQDDVNKFQAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQI  324 (581)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444 6677888888988876654 3344555555555555555555555556666654

>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]

Probab=82.32  E-value=2.8  Score=40.87  Aligned_cols=55  Identities=18%  Similarity=0.375  Sum_probs=40.6

Q ss_pred             hcCCHHHHHHHH----------HHHHHHhH-HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH
Q 026674          165 KLYSPASLLKRI----------QEAMNKTE-EESENLHRQLLDRELDIGAFVQKYKKLRTTYHRRA  219 (235)
Q Consensus       165 ~~~Sp~aL~~~L----------q~a~~eaE-eeSE~Lae~FL~Geidvd~FL~qF~e~RklyH~Rr  219 (235)
                      +.|.|+-+..|+          ..+....| ++.+.+++++..|+.+++||++++...|++--+..
T Consensus       282 E~F~P~R~asRILGMGDv~sLvEk~~~~~d~e~a~~~~~kl~~g~FtL~Df~~Ql~~m~kmGpl~~  347 (451)
T COG0541         282 EPFHPDRFASRILGMGDVLSLIEKAEEVVDEEEAEKLAEKLKKGKFTLEDFLEQLEQMKKMGPLSK  347 (451)
T ss_pred             CCcChHHHHHHhcCcccHHHHHHHHHHhhhHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccCCHHH
Confidence            578888777662          22222222 67899999999999999999999999998544433

>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins

Probab=81.74  E-value=29  Score=28.87  Aligned_cols=23  Identities=17%  Similarity=0.405  Sum_probs=17.2

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHH
Q 026674          199 LDIGAFVQKYKKLRTTYHRRALV  221 (235)
Q Consensus       199 idvd~FL~qF~e~RklyH~Rr~K  221 (235)
                      .|+...+..|......||.+.+-
T Consensus       188 ~dlk~~l~~~~~~qi~~~~~~~~  210 (218)
T cd07596         188 RDLKAALKEFARLQVQYAEKIAE  210 (218)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            36778888888888888876543

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.

>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms

Probab=81.62  E-value=42  Score=31.85  Aligned_cols=45  Identities=27%  Similarity=0.360  Sum_probs=20.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhHHHHHH
Q 026674          145 ELAAAQEKLHDLERQKEQLLKLYSPASLLKRIQEAMNKTEEESEN  189 (235)
Q Consensus       145 el~~L~e~~~ek~~q~~~l~~~~Sp~aL~~~Lq~a~~eaEeeSE~  189 (235)
                      +|+.+-+++++..+++++-....+..+=+.+++.|+.++-+|-..
T Consensus       302 ~L~~IseeLe~vK~emeerg~~mtD~sPlv~IKqAl~kLk~EI~q  346 (359)
T PF10498_consen  302 ELAEISEELEQVKQEMEERGSSMTDGSPLVKIKQALTKLKQEIKQ  346 (359)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence            344444444444444444444444444444444444444444433

Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.

>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]

Probab=81.58  E-value=78  Score=33.69  Aligned_cols=29  Identities=14%  Similarity=0.069  Sum_probs=14.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhhHHH
Q 026674          103 VKIQNNIRDELHRETLQIARDNLDKELRM  131 (235)
Q Consensus       103 vq~l~~~~e~l~~~N~~LAe~NL~~e~~L  131 (235)
                      .+......+.-.+++..+|++|++-+.+|
T Consensus       363 ~~~ql~~le~~~~e~q~~~qe~~~e~eqL  391 (980)
T KOG0980|consen  363 YENQLLALEGELQEQQREAQENREEQEQL  391 (980)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence            33333344444555566666666555443

>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]

Probab=81.42  E-value=27  Score=32.70  Aligned_cols=49  Identities=24%  Similarity=0.383  Sum_probs=35.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhHHHHHHH
Q 026674          142 RTTELAAAQEKLHDLERQKEQLLKLYSPASLLKRIQEAMNKTEEESENL  190 (235)
Q Consensus       142 ~~~el~~L~e~~~ek~~q~~~l~~~~Sp~aL~~~Lq~a~~eaEeeSE~L  190 (235)
                      +..+|.++-.+.+.+.+++++--...|..+-+.+++.+++++.++.-.|
T Consensus       306 rT~~L~eVm~e~E~~KqemEe~G~~msDGaplvkIkqavsKLk~et~~m  354 (384)
T KOG0972|consen  306 RTETLDEVMDEIEQLKQEMEEQGAKMSDGAPLVKIKQAVSKLKEETQTM  354 (384)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcccccCCchHHHHHHHHHHHHHHHHhh
Confidence            4445666666666666677766677788888888888888888887665

>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function

Probab=80.96  E-value=30  Score=30.97  Aligned_cols=46  Identities=11%  Similarity=0.115  Sum_probs=33.6

Q ss_pred             HhccCCHHHHHHHhcCHHHHHHHHHhcHHHHHHHH-HHHHHHHHHHH
Q 026674           74 LLKDKSVDELRKLLADKDAYRQFLLSIDQVKIQNN-IRDELHRETLQ  119 (235)
Q Consensus        74 ~L~~LS~~EL~eLL~d~d~l~~~v~~l~~vq~l~~-~~e~l~~~N~~  119 (235)
                      ....|+++|+++|-.+-+.+-.++.++..-++.++ ..+.+.....+
T Consensus        36 ~q~~l~nee~~eLk~qnkli~K~l~ei~~~qd~reK~~~~I~ssL~e   82 (230)
T PF03904_consen   36 TQMSLENEEIQELKRQNKLIIKYLSEIEEKQDIREKNLKEIKSSLEE   82 (230)
T ss_pred             HHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56778899999999999989899888876666555 44444444333

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]

Probab=80.85  E-value=76  Score=34.46  Aligned_cols=42  Identities=29%  Similarity=0.476  Sum_probs=20.6

Q ss_pred             HHHHHHHHHHHhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 026674          172 LLKRIQEAMNKTEEESENLHRQLLDRELDIGAFVQKYKKLRT  213 (235)
Q Consensus       172 L~~~Lq~a~~eaEeeSE~Lae~FL~Geidvd~FL~qF~e~Rk  213 (235)
                      -+..+...+...+++.+++.+.+.+-+-.+...-.++.+.+.
T Consensus       240 ~l~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~e~~~  281 (1163)
T COG1196         240 ELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELRE  281 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345555566666666666666654333233333333333333

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	235
2p22_C	192	Protein SRN2; endosome, trafficking complex, VPS23	1e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-06
1qzv_F	154	Plant photosystem I: subunit PSAF; photosynthesis,	4e-04

>2p22_C Protein SRN2; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_C 2f66_C Length = 192

 Score = 52.1 bits (124), Expect = 1e-08
 Identities = 27/150 (18%), Positives = 61/150 (40%), Gaps = 13/150 (8%)

Query: 75  LKDKSVDELRKLLADKD----AYRQFLLSIDQVKIQNNIRDELHRETLQIARDNLDKELR 130
           +   S  E+  L+         Y      +     + +   +  ++  +   D  +++ +
Sbjct: 35  INLLSSKEIIDLIQTHRHQLELYVTKFNPLTDFAGKIHAFRDQFKQLEENFEDLHEQKDK 94

Query: 131 MIELRNQSKIIRTTELAAAQEKLHDLERQKEQLLKLYSPASLLKRIQEAMNKTEEESENL 190
           +  L   ++I+ +  +A+ Q+          +  K Y   +L K++++   K +EES  L
Sbjct: 95  VQALLENARILESKYVASWQD-------YHSEFSKKYGDIALKKKLEQNTKKLDEESSQL 147

Query: 191 HRQL--LDRELDIGAFVQKYKKLRTTYHRR 218
                 +D   D+  F++ Y  +RT YH R
Sbjct: 148 ETTTRSIDSADDLDQFIKNYLDIRTQYHLR 177

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.2 bits (111), Expect = 2e-06
 Identities = 35/200 (17%), Positives = 62/200 (31%), Gaps = 54/200 (27%)

Query: 53  PTEQSQPLSHVSPAEAAGIIALLKDKSV--DELRKLLADKDAYRQFLLSIDQVKIQNNIR 110
           P E        +P   + I   ++D     D  + +  DK      L +I +  + N + 
Sbjct: 319 PREVLT----TNPRRLSIIAESIRDGLATWDNWKHVNCDK------LTTIIESSL-NVLE 367

Query: 111 DELHR---ETLQIARDNLDKELRMIELRNQSKIIRTTELAAAQEKLHD---LERQ-KEQL 163
              +R   + L +   +      ++ L     I     +     KLH    +E+Q KE  
Sbjct: 368 PAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVV--NKLHKYSLVEKQPKEST 425

Query: 164 LKLYSPASLLKRIQEAMNKTEEESENLHRQLLDRELDIGAFVQKYKKLRTTYHRRALV-- 221
           + + S       I   +    E    LHR ++D           Y   + T+    L+  
Sbjct: 426 ISIPS-------IYLELKVKLENEYALHRSIVDH----------YNIPK-TFDSDDLIPP 467

Query: 222 ------------HLSAKTHS 229
                       HL    H 
Sbjct: 468 YLDQYFYSHIGHHLKNIEHP 487

>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154

 Score = 38.8 bits (89), Expect = 4e-04
 Identities = 11/36 (30%), Positives = 15/36 (41%), Gaps = 13/36 (36%)

Query: 157 ERQK----EQLLKLYSPAS---LLKRIQEAMNKTEE 185
           E+Q     +  LKLY+  S   L      A+  T E
Sbjct: 18  EKQALKKLQASLKLYADDSAPAL------AIKATME 47

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	235
2p22_C	192	Protein SRN2; endosome, trafficking complex, VPS23	100.0
2jee_A	81	YIIU; FTSZ, septum, coiled-coil, cell division, ce	90.09
3ghg_A	562	Fibrinogen alpha chain; triple-stranded coiled coi	86.93
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	85.39
2v71_A	189	Nuclear distribution protein NUDE-like 1; developm	84.0
2wt7_B	90	Transcription factor MAFB; transcription, transcri	83.43
2w83_C	77	C-JUN-amino-terminal kinase-interacting protein 4;	81.16
1deq_A	390	Fibrinogen (alpha chain); coiled-coil, blood clott	80.91

>2p22_C Protein SRN2; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_C 2f66_C

Probab=100.00  E-value=1.4e-32  Score=234.89  Aligned_cols=147  Identities=15%  Similarity=0.166  Sum_probs=140.0

Q ss_pred             HHhccCCHHHHHHHhcCH-HHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHH
Q 026674           73 ALLKDKSVDELRKLLADK-DAYRQFLLSIDQVKIQNNIRDELHRETLQIARDNLDKELRMIELRNQSKIIRTTELAAAQE  151 (235)
Q Consensus        73 ~~L~~LS~~EL~eLL~d~-d~l~~~v~~l~~vq~l~~~~e~l~~~N~~LAe~NL~~e~~L~elR~ql~~~~~~el~~L~e  151 (235)
                      ..|++||++||++||+|+ ++|++||..+|+|+.++..++++    +++|+.|++++++|+++|.++ ...+.+++.|+.
T Consensus        33 ~~L~~LS~~eL~~LL~~~~dlL~~~v~~l~~~q~~~~~~e~l----~s~ae~ll~l~~~Le~~r~~l-~~~l~~~~~L~~  107 (192)
T 2p22_C           33 EGINLLSSKEIIDLIQTHRHQLELYVTKFNPLTDFAGKIHAF----RDQFKQLEENFEDLHEQKDKV-QALLENARILES  107 (192)
T ss_dssp             SGGGSCTTHHHHHHHHHCHHHHHHHGGGGSCCHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
T ss_pred             HHHHhCCHHHHHHHHhChHHHHHHHHHhchhHHHHHHHHHHH----HHHHHHHHHHhhhHHHHHHHH-HHHHHHHHHHHH
Confidence            479999999999999998 99999999999999999999998    788888899999999999999 579999999999


Q ss_pred             HHHHHHHHHH-HHHhcCCHHHHHHHHHHHHHHhHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 026674          152 KLHDLERQKE-QLLKLYSPASLLKRIQEAMNKTEEESENLHRQLLDR--ELDIGAFVQKYKKLRTTYHRRALVHLS  224 (235)
Q Consensus       152 ~~~ek~~q~~-~l~~~~Sp~aL~~~Lq~a~~eaEeeSE~Lae~FL~G--eidvd~FL~qF~e~RklyH~Rr~K~~a  224 (235)
                      +|..++++++ .++.+|||++|+++|++++.++|++|++|+++|++|  +++|++||++|++.|++||+||+|...
T Consensus       108 ~~~~k~q~~~~~ls~~~sp~~L~~~L~~a~~e~eeeS~~l~~~F~~~~~e~dv~~Fl~~y~~~R~~yH~RreK~~r  183 (192)
T 2p22_C          108 KYVASWQDYHSEFSKKYGDIALKKKLEQNTKKLDEESSQLETTTRSIDSADDLDQFIKNYLDIRTQYHLRREKLAT  183 (192)
T ss_dssp             HHHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHHHHHSCSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999995 899999999999999999999999999999999998  899999999999999999999999654

>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}

Probab=90.09  E-value=4.2  Score=29.63  Aligned_cols=65  Identities=14%  Similarity=0.227  Sum_probs=37.1

Q ss_pred             HHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026674           90 KDAYRQFLLSIDQVKIQNNIRDELHRETLQIARDNLDKELRMIELRNQSKIIRTTELAAAQEKLHDLERQKEQLLK  165 (235)
Q Consensus        90 ~d~l~~~v~~l~~vq~l~~~~e~l~~~N~~LAe~NL~~e~~L~elR~ql~~~~~~el~~L~e~~~ek~~q~~~l~~  165 (235)
                      +.+++..|   +-|.-++.++++|+.+|..|+..|-+....-+.++.+.        ..|+++......++..+..
T Consensus        12 E~KIq~av---dtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en--------~qLk~E~~~wq~Rl~~LLg   76 (81)
T 2jee_A           12 EAKVQQAI---DTITLLQMEIEELKEKNNSLSQEVQNAQHQREELEREN--------NHLKEQQNGWQERLQALLG   76 (81)
T ss_dssp             HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH--------HHHHHHHHHHHHHHHHHHH
Confidence            33444444   44666777888888888888876665554444444433        4455544444444444443

>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*

Probab=86.93  E-value=4  Score=39.27  Aligned_cols=19  Identities=32%  Similarity=0.576  Sum_probs=12.0

Q ss_pred             HHhcCCCCHHHHHHHHHHH
Q 026674          193 QLLDRELDIGAFVQKYKKL  211 (235)
Q Consensus       193 ~FL~Geidvd~FL~qF~e~  211 (235)
                      +.++-++|++++...=+.+
T Consensus       167 r~~~~~vd~~sY~~~QKQL  185 (562)
T 3ghg_A          167 RALAREVDLKDYEDQQKQL  185 (562)
T ss_dssp             CCCCCCCCHHHHHHHHHHH
T ss_pred             chheeecchHHHHHHHHHH
Confidence            4455578887777665544

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}

Probab=85.39  E-value=16  Score=31.09  Aligned_cols=42  Identities=12%  Similarity=0.228  Sum_probs=22.8

Q ss_pred             HHHHHHHHHHHhHHHHHHHHHH--HhcCCCCHHHHHHHHHHHHHH
Q 026674          172 LLKRIQEAMNKTEEESENLHRQ--LLDRELDIGAFVQKYKKLRTT  214 (235)
Q Consensus       172 L~~~Lq~a~~eaEeeSE~Lae~--FL~Geidvd~FL~qF~e~Rkl  214 (235)
                      +.+.+...+.+.+.+-+.+..+  -+.+.|+ .+.|..|...|+-
T Consensus       144 ~~~~~~~~~~e~~~e~~~l~~~r~~l~~~i~-~~lL~~Yerir~~  187 (256)
T 3na7_A          144 LESLVENEVKNIKETQQIIFKKKEDLVEKTE-PKIYSFYERIRRW  187 (256)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHTSC-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-HHHHHHHHHHHHh
Confidence            3444444455444444444222  1334566 6788888888864

>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}

Probab=84.00  E-value=18  Score=30.27  Aligned_cols=54  Identities=9%  Similarity=0.105  Sum_probs=37.5

Q ss_pred             HHhcCHHHHHHHHHhcHHH-HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHh
Q 026674           85 KLLADKDAYRQFLLSIDQV-KIQNNIRDELHRETLQIARDNLDKELRMIELRNQS  138 (235)
Q Consensus        85 eLL~d~d~l~~~v~~l~~v-q~l~~~~e~l~~~N~~LAe~NL~~e~~L~elR~ql  138 (235)
                      .+..=...|+.|..+.-++ ..+...++.+-..|..|-..|..+..+++..|..+
T Consensus        25 ~~~~le~El~EFqesSrELE~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~   79 (189)
T 2v71_A           25 SFQEARDELVEFQEGSRELEAELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKL   79 (189)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344466777887766555 45556777777788888877777777777777765

>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A

Probab=83.43  E-value=5  Score=29.78  Aligned_cols=15  Identities=40%  Similarity=0.383  Sum_probs=11.1

Q ss_pred             HhccCCHHHHHHHhc
Q 026674           74 LLKDKSVDELRKLLA   88 (235)
Q Consensus        74 ~L~~LS~~EL~eLL~   88 (235)
                      .|-++|+.||..+|.
T Consensus         2 eLv~msVreLN~~L~   16 (90)
T 2wt7_B            2 QLVSMSVRELNRHLR   16 (90)
T ss_dssp             HHHHSCHHHHHTTCT
T ss_pred             ccccCCHHHHHHHHc
Confidence            455788888888873

>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}

Probab=81.16  E-value=13  Score=26.75  Aligned_cols=72  Identities=18%  Similarity=0.213  Sum_probs=40.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 026674          103 VKIQNNIRDELHRETLQIARDNLDKELRMIELRNQSKIIRTTELAAAQEKLHDLERQKEQLLKLYSPASLLKRIQEAMNK  182 (235)
Q Consensus       103 vq~l~~~~e~l~~~N~~LAe~NL~~e~~L~elR~ql~~~~~~el~~L~e~~~ek~~q~~~l~~~~Sp~aL~~~Lq~a~~e  182 (235)
                      +..+-.+++.|+.+|.+|-    +-...|+-.|+.+ |.++++|..-++   .+..+..      +-...+.+|+..+.+
T Consensus         4 ~~gmgkevEnLi~EN~eLl----~TKNaLnvvk~DL-I~rvdELt~E~e---~l~~El~------s~~~~~~r~~~ri~e   69 (77)
T 2w83_C            4 PEFMGREVENLILENTQLL----ETKNALNIVKNDL-IAKVDELTCEKD---VLQGELE------AVKQAKLKLEEKNRE   69 (77)
T ss_dssp             HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH-HHHHHHHHHHHH---HHHHHHH------HHHHHHHHHHHHC--
T ss_pred             hhhhhHHHHHHHHHHHHHH----HHHHHHHHHHHHH-HHHHHHHHhHHH---HHHHHHH------HHHHHHHHHHHHHHH
Confidence            3456678888888888886    4667777788877 666666543322   2222222      334556777777777


Q ss_pred             hHHHHH
Q 026674          183 TEEESE  188 (235)
Q Consensus       183 aEeeSE  188 (235)
                      .|+|+.
T Consensus        70 lEeElk   75 (77)
T 2w83_C           70 LEEELR   75 (77)
T ss_dssp             ------
T ss_pred             HHHHHh
Confidence            777654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	235
d2f66c1	65	Vacuolar protein sorting-associated protein 37, VP	99.22

>d2f66c1 a.2.17.3 (C:142-206) Vacuolar protein sorting-associated protein 37, VPS37 (SRN2) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Endosomal sorting complex assembly domain
family: VPS37 C-terminal domain-like
domain: Vacuolar protein sorting-associated protein 37, VPS37 (SRN2)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.22  E-value=5.3e-12  Score=86.45  Aligned_cols=58  Identities=31%  Similarity=0.513  Sum_probs=52.3

Q ss_pred             hcCCHHHHHHHHHHHHHHhHHHHHHHHHHH--hcCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 026674          165 KLYSPASLLKRIQEAMNKTEEESENLHRQL--LDRELDIGAFVQKYKKLRTTYHRRALVH  222 (235)
Q Consensus       165 ~~~Sp~aL~~~Lq~a~~eaEeeSE~Lae~F--L~Geidvd~FL~qF~e~RklyH~Rr~K~  222 (235)
                      .+|++++|+++|+..+.++|++|..|+..-  .+|.-+||.||++|...|+.||+||+|-
T Consensus         2 ~ky~~~~Lk~kL~~~~~~ld~~s~~l~~~~r~~~~s~elD~Fi~qYl~~RTeYH~rREKL   61 (65)
T d2f66c1           2 KKYGDIALKKKLEQNTKKLDEESSQLETTTRSIDSADDLDQFIKNYLDIRTQYHLRREKL   61 (65)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CccchHHHHHHHHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHHh
Confidence            579999999999999999999999998875  2454579999999999999999999984